BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780630|ref|YP_003065043.1| ribonuclease PH [Candidatus
Liberibacter asiaticus str. psy62]
         (242 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780630|ref|YP_003065043.1| ribonuclease PH [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040307|gb|ACT57103.1| ribonuclease PH [Candidatus Liberibacter asiaticus str. psy62]
          Length = 242

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 242/242 (100%), Positives = 242/242 (100%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT
Sbjct: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ
Sbjct: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG
Sbjct: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN
Sbjct: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240

Query: 241 EV 242
           EV
Sbjct: 241 EV 242


>gi|315121831|ref|YP_004062320.1| ribonuclease PH [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495233|gb|ADR51832.1| ribonuclease PH [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 250

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/239 (84%), Positives = 228/239 (95%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MRL GR+ENQMREIS TR +SK+AEGSCLVKFG+THLLTTATLEEKVP+W+RNTK+GWIT
Sbjct: 3   MRLLGRKENQMREISFTRGISKHAEGSCLVKFGETHLLTTATLEEKVPIWLRNTKNGWIT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R+KREAVSGRQGGR+QEIQR+IGR+LRS+VDLSALG RQIIIDCDVIQ
Sbjct: 63  AEYGMLPRSTGSRIKREAVSGRQGGRTQEIQRLIGRSLRSIVDLSALGPRQIIIDCDVIQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAW+ALHDCLQHMED ++KFQLSQVLKGHVAAISCG+L G PIVDL+Y 
Sbjct: 123 ADGGTRTAAITGAWIALHDCLQHMEDRNSKFQLSQVLKGHVAAISCGILSGNPIVDLNYE 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS+ID DANFVMTD+G+IVE+Q SAE+ATFSQD FF+MLNLAKDRI+DLI+LQKDVIS
Sbjct: 183 EDSSIDADANFVMTDAGNIVEIQVSAEKATFSQDQFFSMLNLAKDRISDLIRLQKDVIS 241


>gi|159184261|ref|NP_353359.2| ribonuclease PH [Agrobacterium tumefaciens str. C58]
 gi|21759397|sp|Q8UIG8|RNPH_AGRT5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|159139588|gb|AAK86144.2| ribonuclease PH [Agrobacterium tumefaciens str. C58]
          Length = 238

 Score =  333 bits (854), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 156/239 (65%), Positives = 193/239 (80%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR++S  R  SK+AEGSCLVKFGDTH+L TA+LEEK P W+RN+  GW+T
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLVTASLEEKTPPWLRNSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+KREA SG+QGGR+QEIQR+IGR+LR+VVDL ALG RQI IDCDVIQ
Sbjct: 61  AEYGMLPRSTNERMKREAASGKQGGRTQEIQRLIGRSLRAVVDLQALGERQISIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAW+ALHDCL+ ME   N  ++ +VLK H+AAISCG+    P++DLDY 
Sbjct: 121 ADGGTRTASITGAWIALHDCLKWME-TRNMIKVEKVLKDHIAAISCGIFAKQPVIDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS+ + DANFV+T SG IVEVQG+AE A FS++ F  +L LAK   ++L+ LQK  I+
Sbjct: 180 EDSSAETDANFVITGSGGIVEVQGTAEGAPFSEEEFLTLLGLAKAGCSELVALQKQAIA 238


>gi|222084657|ref|YP_002543186.1| ribonuclease PH [Agrobacterium radiobacter K84]
 gi|254808098|sp|B9J7T9|RNPH_AGRRK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|221722105|gb|ACM25261.1| ribonuclease PH [Agrobacterium radiobacter K84]
          Length = 238

 Score =  332 bits (852), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 153/239 (64%), Positives = 195/239 (81%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR++S  R  SK+AEGSCLVKFGDTH+L TA+LEEK P W+RN+  GW+T
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R+KREA SG+QGGR+QEIQR+IGR+LR+VVDL  LG RQI IDCDVIQ
Sbjct: 61  AEYGMLPRATGERMKREAASGKQGGRTQEIQRLIGRSLRAVVDLKELGERQITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAW+AL+DCL+ ME   N  ++ +VLK H+AAISCG+    P++DLDY 
Sbjct: 121 ADGGTRTASITGAWIALYDCLKWMES-RNMIKVERVLKDHIAAISCGIFASQPVIDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS+ + DANFVMT  G IVE+QG+AE   FS++ F  +++LAK+ IA+L++LQK  I+
Sbjct: 180 EDSSAETDANFVMTGKGGIVEIQGTAEGTPFSEEEFTTLMHLAKNGIAELVELQKQAIA 238


>gi|15964129|ref|NP_384482.1| ribonuclease PH [Sinorhizobium meliloti 1021]
 gi|307301274|ref|ZP_07581036.1| ribonuclease PH [Sinorhizobium meliloti BL225C]
 gi|307317945|ref|ZP_07597382.1| ribonuclease PH [Sinorhizobium meliloti AK83]
 gi|21759408|sp|Q92SK2|RNPH_RHIME RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|15073305|emb|CAC41813.1| Probable ribonuclease PH protein [Sinorhizobium meliloti 1021]
 gi|306896347|gb|EFN27096.1| ribonuclease PH [Sinorhizobium meliloti AK83]
 gi|306903730|gb|EFN34317.1| ribonuclease PH [Sinorhizobium meliloti BL225C]
          Length = 239

 Score =  331 bits (848), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 154/240 (64%), Positives = 195/240 (81%), Gaps = 1/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR++S  R  SK+AEGSCLV+FGDTH+L TA+LEEKVP W+RN   GWIT
Sbjct: 1   MRPSGRKTDQMRKVSFERSFSKHAEGSCLVRFGDTHVLCTASLEEKVPAWLRNGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R++REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI IDCDVIQ
Sbjct: 61  AEYGMLPRATGERMRREAATGKQSGRTQEIQRLIGRSLRAVVDLPALGERQISIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAW+ALHDCL+ ME   N  +L +VLK HVAAISCG+    P++DLDY 
Sbjct: 121 ADGGTRTASITGAWIALHDCLKWME-ARNMVKLEKVLKDHVAAISCGIFANQPVIDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + DANFVMT SG +VE+QG+AE   FS++ F +++ LAK+ IA+L+++QK  I+ 
Sbjct: 180 EDSAAETDANFVMTGSGGLVEIQGTAEGKPFSEEEFASLMLLAKNGIAELVEMQKQAIAG 239


>gi|222147322|ref|YP_002548279.1| ribonuclease PH [Agrobacterium vitis S4]
 gi|254808101|sp|B9JZG3|RNPH_AGRVS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|221734312|gb|ACM35275.1| ribonuclease PH [Agrobacterium vitis S4]
          Length = 239

 Score =  330 bits (847), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 155/240 (64%), Positives = 192/240 (80%), Gaps = 1/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR+IS  R  SK+AEGSCLVKFGDTH+L TA+LE++ P W+RNT  GW+T
Sbjct: 1   MRPSGRKTDQMRKISFERNFSKHAEGSCLVKFGDTHVLCTASLEDRTPPWLRNTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R+KREA SG+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATGERIKREASSGKQSGRTQEIQRLIGRSLRAVVDLEALGERQISLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAW+ALHDCL+ ME   N  ++ +VLK HVAAISCG+    P++DLDY 
Sbjct: 121 ADGGTRTASITGAWIALHDCLKWMES-RNIIKVDRVLKDHVAAISCGIFAAQPVIDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + DANFVMT +G IVE+QG+AE   FSQ+ F  +L LA+  IA+L+ LQK  I+ 
Sbjct: 180 EDSAAETDANFVMTGTGGIVEIQGTAEGKPFSQEEFLTLLGLAQTGIAELVDLQKQAIAG 239


>gi|325291761|ref|YP_004277625.1| ribonuclease PH [Agrobacterium sp. H13-3]
 gi|325059614|gb|ADY63305.1| ribonuclease PH [Agrobacterium sp. H13-3]
          Length = 238

 Score =  330 bits (847), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 155/239 (64%), Positives = 193/239 (80%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR++S  R  SK+AEGSCLVKFGDTH+L TA+LEEK P W+RN+  GW+T
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLVTASLEEKTPPWLRNSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG RQI IDCDVIQ
Sbjct: 61  AEYGMLPRSTHERMKREASAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQISIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAW+ALHDCL+ ME   N  ++ +VLK H+AAISCG+    P++DLDY 
Sbjct: 121 ADGGTRTASITGAWIALHDCLKWME-TRNMIKVEKVLKDHIAAISCGIFAKQPVIDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS+ + DANFV+T SG IVEVQG+AE A FS++ F  +L LAK   ++L+ LQK  I+
Sbjct: 180 EDSSAETDANFVITGSGGIVEVQGTAEGAPFSEEEFLTLLGLAKAGCSELVALQKQAIA 238


>gi|209547618|ref|YP_002279535.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|226736929|sp|B5ZMW8|RNPH_RHILW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|209533374|gb|ACI53309.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 239

 Score =  328 bits (841), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 151/240 (62%), Positives = 194/240 (80%), Gaps = 1/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR++S  R  SK+AEGSCLVKFGDTH+L TA+LEEK P W+RN+  GW+T
Sbjct: 1   MRPSGRKIDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG W+AL+DCL+ ME   N  ++ +VLK HVAAISCG+    P++DLDY 
Sbjct: 121 ADGGTRTASITGGWIALYDCLKWMES-RNMIKVDRVLKDHVAAISCGVFASQPVIDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS+ + DANFVMT +G IVE+QG+AE   FS++ F +++ LAK+ I +L+ LQK  I+ 
Sbjct: 180 EDSSAETDANFVMTGAGGIVEIQGTAEGTPFSEEEFTSLMGLAKNGIGELVALQKQAIAG 239


>gi|227820597|ref|YP_002824567.1| ribonuclease PH [Sinorhizobium fredii NGR234]
 gi|254808598|sp|C3MEJ1|RNPH_RHISN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|227339596|gb|ACP23814.1| ribonuclease PH [Sinorhizobium fredii NGR234]
          Length = 239

 Score =  327 bits (837), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 153/239 (64%), Positives = 193/239 (80%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR++S  R  SK+AEGSCLV+FGDTH+L TA+LE+KVP W+RN   GWIT
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVRFGDTHVLCTASLEDKVPAWLRNGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R++REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI IDCDVIQ
Sbjct: 61  AEYGMLPRATGERMRREASTGKQSGRTQEIQRLIGRSLRAVVDLPALGERQISIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAW+ALHDCL+ ME   N  ++ +VLK HVAAISCG+     +VDLDY 
Sbjct: 121 ADGGTRTASITGAWIALHDCLKWME-ARNMIKVERVLKDHVAAISCGIFANQAVVDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFVMT SG +VE+QG+AE   FS++ F +++ LAKD IA+L+ LQK  ++
Sbjct: 180 EDSAAETDANFVMTGSGGLVEIQGTAEGKPFSEEEFASLMQLAKDGIAELVALQKQAVA 238


>gi|150395238|ref|YP_001325705.1| ribonuclease PH [Sinorhizobium medicae WSM419]
 gi|166228322|sp|A6U5E0|RNPH_SINMW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|150026753|gb|ABR58870.1| ribonuclease PH [Sinorhizobium medicae WSM419]
          Length = 239

 Score =  327 bits (837), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 153/240 (63%), Positives = 195/240 (81%), Gaps = 1/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR++S  R  SK+AEGSCLV+FGDTH+L TA+LE+KVP W+RN   GW+T
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVRFGDTHVLCTASLEDKVPGWLRNGGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R++REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATGERMRREASAGKQSGRTQEIQRLIGRSLRAVVDLPALGERQISVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAW+ALHDCL+ ME   N  +L +VLK HVAAISCG+    P+VDLDY 
Sbjct: 121 ADGGTRTASITGAWIALHDCLKWME-ARNMVKLEKVLKDHVAAISCGIFASQPVVDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + DANFVMT SG +VE+QG+AE   FS++ F +++ LAK+ IA+LI++QK  I+ 
Sbjct: 180 EDSAAETDANFVMTGSGGLVEIQGTAEGKPFSEEEFASLMLLAKNGIAELIEMQKLAIAG 239


>gi|116250149|ref|YP_765987.1| ribonuclease PH [Rhizobium leguminosarum bv. viciae 3841]
 gi|166228307|sp|Q1MMD1|RNPH_RHIL3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|115254797|emb|CAK05871.1| putative ribonuclease [Rhizobium leguminosarum bv. viciae 3841]
          Length = 239

 Score =  327 bits (837), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 150/238 (63%), Positives = 192/238 (80%), Gaps = 1/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR++S  R  SK+AEGSCLVKFGDTH+L TA+LEEK P W+RNT  GW+T
Sbjct: 1   MRPSGRKIDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG W+AL+DCL+ ME   N  ++ +VLK HVAAISCG+    P++DLDY 
Sbjct: 121 ADGGTRTASITGGWIALYDCLKWMES-RNMIKVDRVLKDHVAAISCGIFASQPVIDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS+ + DANFVMT +G IVE+QG+AE   FS+  F +++ LA++ I +L+ LQK  +
Sbjct: 180 EDSSAETDANFVMTGTGGIVEIQGTAEGTPFSEGEFTSLMQLARNGIGELVALQKQAV 237


>gi|241202761|ref|YP_002973857.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240856651|gb|ACS54318.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 239

 Score =  326 bits (836), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 150/238 (63%), Positives = 192/238 (80%), Gaps = 1/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR++S  R  SK+AEGSCLVKFGDTH+L TA+LEEK P W+RNT  GW+T
Sbjct: 1   MRPSGRKIDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG W+AL+DCL+ ME   N  ++ +VLK HVAAISCG+    P++DLDY 
Sbjct: 121 ADGGTRTASITGGWIALYDCLKWMES-RNMIKVERVLKDHVAAISCGIFASQPVIDLDYI 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS+ + DANFVMT +G IVE+QG+AE   FS+  F +++ LA++ I +L+ LQK  +
Sbjct: 180 EDSSAETDANFVMTGTGGIVEIQGTAEGTPFSEGEFTSLMQLARNGIGELVALQKQAV 237


>gi|86356020|ref|YP_467912.1| ribonuclease PH [Rhizobium etli CFN 42]
 gi|123513255|sp|Q2KDA1|RNPH_RHIEC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|86280122|gb|ABC89185.1| ribonuclease PH protein [Rhizobium etli CFN 42]
          Length = 239

 Score =  325 bits (834), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 150/239 (62%), Positives = 193/239 (80%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR++S  R  SK+AEGSCLVKFGDTH+L TA+LEEK P W+RNT  GW+T
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG +QI +DCDVIQ
Sbjct: 61  AEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGEKQITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG W+AL+DCL+ ME   N  ++ +VLK HVAAISCG+     ++DLDY 
Sbjct: 121 ADGGTRTASITGGWIALYDCLKWMES-RNMIKVDRVLKDHVAAISCGVFANQAVIDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS+ + DANFVMT +G IVE+QG+AE   FS++ F +++ LAK+ I +L+ LQK  I+
Sbjct: 180 EDSSAETDANFVMTGAGGIVEIQGTAEGTPFSEEEFSSLMRLAKNGIGELVALQKQAIA 238


>gi|190890032|ref|YP_001976574.1| ribonuclease PH protein [Rhizobium etli CIAT 652]
 gi|218516544|ref|ZP_03513384.1| ribonuclease PH [Rhizobium etli 8C-3]
 gi|226736928|sp|B3PZA2|RNPH_RHIE6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|190695311|gb|ACE89396.1| ribonuclease PH protein [Rhizobium etli CIAT 652]
          Length = 239

 Score =  324 bits (831), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 149/240 (62%), Positives = 193/240 (80%), Gaps = 1/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR++S  R  SK+AEGSCLVKFGDTH+L TA+LE+K P W+RNT  GW+T
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEDKTPPWLRNTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG W+AL+DCL+ ME   N  ++ +VLK HVAAISCG+     ++DLDY 
Sbjct: 121 ADGGTRTASITGGWIALYDCLKWMES-RNMIKVDRVLKDHVAAISCGVFASQAVIDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS+ + DANFVMT +G IVE+QG+AE   F+++ F +++ LAK+ I +L+ LQK  I+ 
Sbjct: 180 EDSSAETDANFVMTGAGGIVEIQGTAEGTPFTEEEFTSLMGLAKNGIGELVALQKQAIAG 239


>gi|163757816|ref|ZP_02164905.1| ribonuclease PH [Hoeflea phototrophica DFL-43]
 gi|162285318|gb|EDQ35600.1| ribonuclease PH [Hoeflea phototrophica DFL-43]
          Length = 238

 Score =  323 bits (828), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 152/239 (63%), Positives = 192/239 (80%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR +S  R VSK+AEGSCLVKFGDTH+L TA+LEE+VP W+RN   GW+T
Sbjct: 1   MRPSGRKTDQMRAVSFERGVSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRNGGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R++REA SG+QGGR+ EIQR+IGR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRSTGDRMRREATSGKQGGRTLEIQRLIGRSLRAVVDLPALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAW+ALHDCL+ ME+ S   ++ +VLK HVAA+SCG+  G  + DLDY 
Sbjct: 121 ADGGTRTAAITGAWIALHDCLKWMEERS-MVKVERVLKDHVAAVSCGIFAGQAVTDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS+ + DANFVMT +G IVE+QG+AE   F+++    ++ LAK  I DL+ LQK  ++
Sbjct: 180 EDSSAETDANFVMTGTGGIVEIQGTAEGEPFTEEQLGQLMGLAKAAINDLVALQKSAVA 238


>gi|62289149|ref|YP_220942.1| ribonuclease PH [Brucella abortus bv. 1 str. 9-941]
 gi|82699088|ref|YP_413662.1| ribonuclease PH [Brucella melitensis biovar Abortus 2308]
 gi|148559274|ref|YP_001258205.1| ribonuclease PH [Brucella ovis ATCC 25840]
 gi|161618161|ref|YP_001592048.1| ribonuclease PH [Brucella canis ATCC 23365]
 gi|163842442|ref|YP_001626846.1| ribonuclease PH [Brucella suis ATCC 23445]
 gi|189023423|ref|YP_001934191.1| ribonuclease PH [Brucella abortus S19]
 gi|225626711|ref|ZP_03784750.1| ribonuclease PH [Brucella ceti str. Cudo]
 gi|237814642|ref|ZP_04593640.1| ribonuclease PH [Brucella abortus str. 2308 A]
 gi|254690474|ref|ZP_05153728.1| ribonuclease PH [Brucella abortus bv. 6 str. 870]
 gi|254694963|ref|ZP_05156791.1| ribonuclease PH [Brucella abortus bv. 3 str. Tulya]
 gi|254696594|ref|ZP_05158422.1| ribonuclease PH [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700978|ref|ZP_05162806.1| ribonuclease PH [Brucella suis bv. 5 str. 513]
 gi|254705349|ref|ZP_05167177.1| ribonuclease PH [Brucella suis bv. 3 str. 686]
 gi|254707138|ref|ZP_05168966.1| ribonuclease PH [Brucella pinnipedialis M163/99/10]
 gi|254709319|ref|ZP_05171130.1| ribonuclease PH [Brucella pinnipedialis B2/94]
 gi|254713260|ref|ZP_05175071.1| ribonuclease PH [Brucella ceti M644/93/1]
 gi|254716387|ref|ZP_05178198.1| ribonuclease PH [Brucella ceti M13/05/1]
 gi|254718387|ref|ZP_05180198.1| ribonuclease PH [Brucella sp. 83/13]
 gi|254731507|ref|ZP_05190085.1| ribonuclease PH [Brucella abortus bv. 4 str. 292]
 gi|256030842|ref|ZP_05444456.1| ribonuclease PH [Brucella pinnipedialis M292/94/1]
 gi|256060312|ref|ZP_05450485.1| ribonuclease PH [Brucella neotomae 5K33]
 gi|256158871|ref|ZP_05456725.1| ribonuclease PH [Brucella ceti M490/95/1]
 gi|256254248|ref|ZP_05459784.1| ribonuclease PH [Brucella ceti B1/94]
 gi|256258730|ref|ZP_05464266.1| ribonuclease PH [Brucella abortus bv. 9 str. C68]
 gi|256368637|ref|YP_003106143.1| ribonuclease PH [Brucella microti CCM 4915]
 gi|260169746|ref|ZP_05756557.1| ribonuclease PH [Brucella sp. F5/99]
 gi|260546446|ref|ZP_05822186.1| ribonuclease PH [Brucella abortus NCTC 8038]
 gi|260567190|ref|ZP_05837660.1| ribonuclease PH [Brucella suis bv. 4 str. 40]
 gi|260756028|ref|ZP_05868376.1| tRNA nucleotidyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260759252|ref|ZP_05871600.1| tRNA nucleotidyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260760975|ref|ZP_05873318.1| tRNA nucleotidyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260885049|ref|ZP_05896663.1| tRNA nucleotidyltransferase [Brucella abortus bv. 9 str. C68]
 gi|261215305|ref|ZP_05929586.1| tRNA nucleotidyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|261218173|ref|ZP_05932454.1| tRNA nucleotidyltransferase [Brucella ceti M13/05/1]
 gi|261221399|ref|ZP_05935680.1| tRNA nucleotidyltransferase [Brucella ceti B1/94]
 gi|261314614|ref|ZP_05953811.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261316830|ref|ZP_05956027.1| tRNA nucleotidyltransferase [Brucella pinnipedialis B2/94]
 gi|261320979|ref|ZP_05960176.1| tRNA nucleotidyltransferase [Brucella ceti M644/93/1]
 gi|261324287|ref|ZP_05963484.1| tRNA nucleotidyltransferase [Brucella neotomae 5K33]
 gi|261751499|ref|ZP_05995208.1| tRNA nucleotidyltransferase [Brucella suis bv. 5 str. 513]
 gi|261756063|ref|ZP_05999772.1| tRNA nucleotidyltransferase [Brucella suis bv. 3 str. 686]
 gi|261759287|ref|ZP_06002996.1| ribonuclease PH [Brucella sp. F5/99]
 gi|265983351|ref|ZP_06096086.1| tRNA nucleotidyltransferase [Brucella sp. 83/13]
 gi|265987900|ref|ZP_06100457.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M292/94/1]
 gi|265997361|ref|ZP_06109918.1| tRNA nucleotidyltransferase [Brucella ceti M490/95/1]
 gi|294851571|ref|ZP_06792244.1| ribonuclease PH [Brucella sp. NVSL 07-0026]
 gi|297247565|ref|ZP_06931283.1| ribonuclease PH [Brucella abortus bv. 5 str. B3196]
 gi|306839620|ref|ZP_07472424.1| ribonuclease PH [Brucella sp. NF 2653]
 gi|306842542|ref|ZP_07475193.1| ribonuclease PH [Brucella sp. BO2]
 gi|306844440|ref|ZP_07477030.1| ribonuclease PH [Brucella sp. BO1]
 gi|75497456|sp|Q57FK3|RNPH_BRUAB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123546812|sp|Q2YP33|RNPH_BRUA2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228268|sp|A5VNA8|RNPH_BRUO2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043754|sp|A9M7B8|RNPH_BRUC2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043755|sp|B0CJ32|RNPH_BRUSI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736890|sp|B2S8G4|RNPH_BRUA1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|62195281|gb|AAX73581.1| Rph, ribonuclease PH [Brucella abortus bv. 1 str. 9-941]
 gi|82615189|emb|CAJ10128.1| 3' exoribonuclease:Ribonuclease PH [Brucella melitensis biovar
           Abortus 2308]
 gi|148370531|gb|ABQ60510.1| ribonuclease PH [Brucella ovis ATCC 25840]
 gi|161334972|gb|ABX61277.1| ribonuclease PH [Brucella canis ATCC 23365]
 gi|163673165|gb|ABY37276.1| ribonuclease PH [Brucella suis ATCC 23445]
 gi|189018995|gb|ACD71717.1| Ribonuclease PH [Brucella abortus S19]
 gi|225618368|gb|EEH15411.1| ribonuclease PH [Brucella ceti str. Cudo]
 gi|237789479|gb|EEP63689.1| ribonuclease PH [Brucella abortus str. 2308 A]
 gi|255998795|gb|ACU47194.1| ribonuclease PH [Brucella microti CCM 4915]
 gi|260096553|gb|EEW80429.1| ribonuclease PH [Brucella abortus NCTC 8038]
 gi|260156708|gb|EEW91788.1| ribonuclease PH [Brucella suis bv. 4 str. 40]
 gi|260669570|gb|EEX56510.1| tRNA nucleotidyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260671407|gb|EEX58228.1| tRNA nucleotidyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676136|gb|EEX62957.1| tRNA nucleotidyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260874577|gb|EEX81646.1| tRNA nucleotidyltransferase [Brucella abortus bv. 9 str. C68]
 gi|260916912|gb|EEX83773.1| tRNA nucleotidyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|260919983|gb|EEX86636.1| tRNA nucleotidyltransferase [Brucella ceti B1/94]
 gi|260923262|gb|EEX89830.1| tRNA nucleotidyltransferase [Brucella ceti M13/05/1]
 gi|261293669|gb|EEX97165.1| tRNA nucleotidyltransferase [Brucella ceti M644/93/1]
 gi|261296053|gb|EEX99549.1| tRNA nucleotidyltransferase [Brucella pinnipedialis B2/94]
 gi|261300267|gb|EEY03764.1| tRNA nucleotidyltransferase [Brucella neotomae 5K33]
 gi|261303640|gb|EEY07137.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261739271|gb|EEY27267.1| ribonuclease PH [Brucella sp. F5/99]
 gi|261741252|gb|EEY29178.1| tRNA nucleotidyltransferase [Brucella suis bv. 5 str. 513]
 gi|261745816|gb|EEY33742.1| tRNA nucleotidyltransferase [Brucella suis bv. 3 str. 686]
 gi|262551829|gb|EEZ07819.1| tRNA nucleotidyltransferase [Brucella ceti M490/95/1]
 gi|264660097|gb|EEZ30358.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M292/94/1]
 gi|264661943|gb|EEZ32204.1| tRNA nucleotidyltransferase [Brucella sp. 83/13]
 gi|294820160|gb|EFG37159.1| ribonuclease PH [Brucella sp. NVSL 07-0026]
 gi|297174734|gb|EFH34081.1| ribonuclease PH [Brucella abortus bv. 5 str. B3196]
 gi|306275253|gb|EFM57003.1| ribonuclease PH [Brucella sp. BO1]
 gi|306287398|gb|EFM58878.1| ribonuclease PH [Brucella sp. BO2]
 gi|306405318|gb|EFM61593.1| ribonuclease PH [Brucella sp. NF 2653]
          Length = 238

 Score =  318 bits (815), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 151/239 (63%), Positives = 188/239 (78%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  ++MR IS  R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RNT  GW+T
Sbjct: 1   MRPSKRAADEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG R++REA +G+QGGR+QEIQR+IGR+LR+VVD+ ALG  QI +DCDVIQ
Sbjct: 61  AEYGMLPRSTGERMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEMQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG WVALH+CL+ ME      ++ +VLK HVAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGGWVALHECLRWME-ARQMVRVEKVLKDHVAAISCGIYEGVPVLDLDYA 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D+NFVMT  G IVE+QG+AE   FS++ F A++ LA+  I  L+ LQK  ++
Sbjct: 180 EDSVAETDSNFVMTGKGGIVEIQGTAEGVPFSEEEFGALMKLARSGIDRLVSLQKMAVA 238


>gi|17988058|ref|NP_540692.1| ribonuclease PH [Brucella melitensis bv. 1 str. 16M]
 gi|225851706|ref|YP_002731939.1| ribonuclease PH [Brucella melitensis ATCC 23457]
 gi|256045962|ref|ZP_05448834.1| ribonuclease PH [Brucella melitensis bv. 1 str. Rev.1]
 gi|256112675|ref|ZP_05453596.1| ribonuclease PH [Brucella melitensis bv. 3 str. Ether]
 gi|256264784|ref|ZP_05467316.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|260563245|ref|ZP_05833731.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|265992375|ref|ZP_06104932.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994118|ref|ZP_06106675.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|21759402|sp|Q8YEV2|RNPH_BRUME RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808582|sp|C0RGM7|RNPH_BRUMB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|17983807|gb|AAL52956.1| ribonuclease ph [Brucella melitensis bv. 1 str. 16M]
 gi|225640071|gb|ACN99984.1| ribonuclease PH [Brucella melitensis ATCC 23457]
 gi|260153261|gb|EEW88353.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|262765099|gb|EEZ11020.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|263003441|gb|EEZ15734.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263095193|gb|EEZ18862.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408195|gb|ADZ65260.1| ribonuclease PH [Brucella melitensis M28]
 gi|326537910|gb|ADZ86125.1| ribonuclease PH [Brucella melitensis M5-90]
          Length = 238

 Score =  318 bits (815), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 151/239 (63%), Positives = 188/239 (78%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  ++MR IS  R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RNT  GW+T
Sbjct: 1   MRPSKRAADEMRTISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG R++REA +G+QGGR+QEIQR+IGR+LR+VVD+ ALG  QI +DCDVIQ
Sbjct: 61  AEYGMLPRSTGERMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEMQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG WVALH+CL+ ME      ++ +VLK HVAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGGWVALHECLRWME-ARQMVRVEKVLKDHVAAISCGIYEGVPVLDLDYA 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D+NFVMT  G IVE+QG+AE   FS++ F A++ LA+  I  L+ LQK  ++
Sbjct: 180 EDSVAETDSNFVMTGKGGIVEIQGTAEGVPFSEEEFGALMKLARSGIDRLVSLQKMAVA 238


>gi|23501084|ref|NP_697211.1| ribonuclease PH [Brucella suis 1330]
 gi|38258602|sp|Q8G2Y5|RNPH_BRUSU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|23346953|gb|AAN29126.1| ribonuclease PH [Brucella suis 1330]
          Length = 238

 Score =  317 bits (813), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 151/239 (63%), Positives = 187/239 (78%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  ++MR IS  R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RNT  GW+T
Sbjct: 1   MRPSKRAADEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG R++REA +G+QGGR+QEIQR IGR+LR+VVD+ ALG  QI +DCDVIQ
Sbjct: 61  AEYGMLPRSTGERMRREAAAGKQGGRTQEIQRFIGRSLRAVVDMQALGEMQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG WVALH+CL+ ME      ++ +VLK HVAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGGWVALHECLRWME-ARQMVRVEKVLKDHVAAISCGIYEGVPVLDLDYA 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D+NFVMT  G IVE+QG+AE   FS++ F A++ LA+  I  L+ LQK  ++
Sbjct: 180 EDSVAETDSNFVMTGKGGIVEIQGTAEGVPFSEEEFGALMKLARSGIDRLVSLQKMAVA 238


>gi|239831019|ref|ZP_04679348.1| ribonuclease PH [Ochrobactrum intermedium LMG 3301]
 gi|239823286|gb|EEQ94854.1| ribonuclease PH [Ochrobactrum intermedium LMG 3301]
          Length = 238

 Score =  317 bits (811), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 148/239 (61%), Positives = 190/239 (79%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  ++MR +S  R +SK+AEGSCLVKFGDTH+L TA+LEEKVP W+RNT  GW+T
Sbjct: 1   MRPSKRAADEMRAVSFERGISKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R++REA +G+QGGR+QEIQR+IGR+LR+VVD+ ALG  QI +DCDVIQ
Sbjct: 61  AEYGMLPRSTGDRMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEVQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG WVALH+CL+ ME      ++ +VLK H+AAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGGWVALHECLRWME-ARQMVRVEKVLKDHIAAISCGIYEGEPVLDLDYA 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D+NFVMT  G IVE+QG+AE A FS++ F +++ LA+  I  L+ LQK  ++
Sbjct: 180 EDSVAETDSNFVMTGKGGIVEIQGTAEGAPFSEEEFASLMKLARGGIDRLVSLQKMAVA 238


>gi|153007527|ref|YP_001368742.1| ribonuclease PH [Ochrobactrum anthropi ATCC 49188]
 gi|166228300|sp|A6WVA9|RNPH_OCHA4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|151559415|gb|ABS12913.1| ribonuclease PH [Ochrobactrum anthropi ATCC 49188]
          Length = 238

 Score =  315 bits (808), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 148/239 (61%), Positives = 189/239 (79%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  ++MR +S  R +SK+AEGSCLVKFGDTH+L TA+LEEKVP W+RNT  GW+T
Sbjct: 1   MRPSKRAADEMRAVSFERGISKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R++REA +G+QGGR+QEIQR+IGR+LR+VVD+ ALG  QI +DCDVIQ
Sbjct: 61  AEYGMLPRSTGDRMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEVQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG WVALH+CL+ ME      ++ +VLK H+AAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGGWVALHECLRWME-ARQMVRVEKVLKDHIAAISCGIYEGEPVLDLDYA 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D+NFVMT  G IVE+QG+AE A FS++ F  ++ LA+  I  L+ LQK  ++
Sbjct: 180 EDSVAETDSNFVMTGKGGIVEIQGTAEGAPFSEEEFANLMKLARGGIDRLVSLQKMAVA 238


>gi|110636340|ref|YP_676548.1| ribonuclease PH [Mesorhizobium sp. BNC1]
 gi|122965408|sp|Q11B42|RNPH_MESSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|110287324|gb|ABG65383.1| RNAse PH [Chelativorans sp. BNC1]
          Length = 238

 Score =  313 bits (803), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 150/239 (62%), Positives = 187/239 (78%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S RQ ++MR IS  R VSK+AEGSCLV+FGDTH+L TA+LEEKVP W+RN+  GW+T
Sbjct: 1   MRPSRRQPDEMRAISFERGVSKHAEGSCLVRFGDTHVLCTASLEEKVPAWLRNSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG R++REA SG+QGGR+ EIQR++GR+LRSV+DL ALG  QI +DCDV+Q
Sbjct: 61  AEYGMLPRSTGERMRREAASGKQGGRTLEIQRLVGRSLRSVIDLEALGEMQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG +VALHDCL  M+       + +VLK HVAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGGFVALHDCLSWMQ-ARQMVTVERVLKDHVAAISCGIYDGTPVLDLDYA 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFVMT  G IVE+QG+AE A F+++ F  +L LA+  I  L++LQK  +S
Sbjct: 180 EDSAAETDANFVMTGKGGIVEIQGTAEGAPFTEEEFHELLRLARKGIFRLVELQKMAVS 238


>gi|13473880|ref|NP_105448.1| ribonuclease PH [Mesorhizobium loti MAFF303099]
 gi|21759410|sp|Q98DN6|RNPH_RHILO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|14024631|dbj|BAB51234.1| ribonuclease PH [Mesorhizobium loti MAFF303099]
          Length = 238

 Score =  313 bits (801), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 152/239 (63%), Positives = 187/239 (78%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S RQ ++MR IS  R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RN+  GW+T
Sbjct: 1   MRPSKRQFDEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG R++REA +G+QGGR+ EIQR+IGR+LR+VVDL ALG +QI +DCDVIQ
Sbjct: 61  AEYGMLPRSTGERMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG WVAL+DCL+ ME       +S+VLK HVAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGGWVALYDCLRWME-ARQMASVSKVLKDHVAAISCGIHDGQPVIDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    DANFVMT  G IVE+QG+AE   FS+D F  ++ LAK  I  L+ LQ+  ++
Sbjct: 180 EDSAAGTDANFVMTGKGGIVEIQGTAEGEPFSEDQFAELMGLAKKGIQRLVSLQQMAVA 238


>gi|260463468|ref|ZP_05811668.1| ribonuclease PH [Mesorhizobium opportunistum WSM2075]
 gi|259030793|gb|EEW32069.1| ribonuclease PH [Mesorhizobium opportunistum WSM2075]
          Length = 238

 Score =  310 bits (793), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 151/239 (63%), Positives = 187/239 (78%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S RQ ++MR IS  R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RN+  GW+T
Sbjct: 1   MRPSKRQFDEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG R++REA +G+QGGR+ EIQR+IGR+LR+VVDL ALG +QI +DCDVIQ
Sbjct: 61  AEYGMLPRSTGERMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG WVAL+DCL+ ME       +S+VLK HVAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGGWVALYDCLRWME-ARQMTSVSKVLKDHVAAISCGIHDGQPVIDLDYI 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS+   DANFVMT  G IVE+QG+AE   FS+  F  ++ LAK  I  L+ LQ+  ++
Sbjct: 180 EDSSAGTDANFVMTGKGGIVEIQGTAEGEPFSEGQFADLMGLAKKGIQRLVSLQQMAVA 238


>gi|319780511|ref|YP_004139987.1| ribonuclease PH [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317166399|gb|ADV09937.1| ribonuclease PH [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 238

 Score =  309 bits (792), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 150/239 (62%), Positives = 187/239 (78%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S RQ ++MR IS  R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RN+  GW+T
Sbjct: 1   MRPSKRQFDEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG R++REA +G+QGGR+ EIQR+IGR+LR+VVDL ALG +QI +DCDVIQ
Sbjct: 61  AEYGMLPRSTGERMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG WVAL+DCL+ ME       +++VLK HVAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGGWVALYDCLRWME-ARQMASVAKVLKDHVAAISCGIHDGQPVIDLDYI 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    DANFVMT  G IVE+QG+AE   FS++ F  ++ LAK  I  L+ LQ+  ++
Sbjct: 180 EDSAAGTDANFVMTGKGGIVEIQGTAEGEPFSEEQFADLMGLAKKGIQRLVSLQQMAVA 238


>gi|254472318|ref|ZP_05085718.1| ribonuclease PH [Pseudovibrio sp. JE062]
 gi|211958601|gb|EEA93801.1| ribonuclease PH [Pseudovibrio sp. JE062]
          Length = 239

 Score =  309 bits (791), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 144/234 (61%), Positives = 184/234 (78%), Gaps = 1/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R S R   +MR +SL R V+K+AEGSCL+KFGDTH+L TA+LEE+VP W+R    GW+TA
Sbjct: 3   RPSKRTPEEMRPVSLERGVAKHAEGSCLIKFGDTHVLCTASLEERVPPWLRGQNRGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T +R++RE+ +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQA
Sbjct: 63  EYGMLPRATHDRMRRESSAGKQSGRTQEIQRLIGRSLRAVVDLGALGERQITVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGAWVALHDCL+ ME   +  +  +VLK H+AAISCG+  G P+ DLDY E
Sbjct: 123 DGGTRTASITGAWVALHDCLKWME-ARDMVKTDKVLKDHIAAISCGIYEGTPVADLDYAE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS+ D DANFVMT  G IVE+QG+AE   FS++    ++ LAK  I+ L++LQK
Sbjct: 182 DSSADTDANFVMTGKGGIVEIQGTAEGEPFSEEELGQLMGLAKQSISKLVELQK 235


>gi|154254011|ref|YP_001414835.1| ribonuclease PH [Parvibaculum lavamentivorans DS-1]
 gi|171769691|sp|A7HZ45|RNPH_PARL1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|154157961|gb|ABS65178.1| ribonuclease PH [Parvibaculum lavamentivorans DS-1]
          Length = 238

 Score =  308 bits (790), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 146/239 (61%), Positives = 184/239 (76%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ  +MR +S    V+K+AEGSCLV+FGDTH+L TA+LEE+VP +++    GW+T
Sbjct: 1   MRPSGRQPQEMRTVSFEPGVAKHAEGSCLVRFGDTHVLCTASLEERVPPFLKGGGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R++REA  G+Q GR+QEIQR++GR+LRSVVDL ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRSTHERMRREAAQGKQSGRTQEIQRLVGRSLRSVVDLKALGERQISVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVALH C++ M   +     + VLK HVAAISCG+  G P+VDLDY 
Sbjct: 121 ADGGTRTASITGAWVALHQCIEWMR--ARSMISAPVLKDHVAAISCGIYQGVPVVDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST D DANFV+T  G I E+QG+AE   FS + F ++L LAK  IADL++ QK+ +S
Sbjct: 179 EDSTADTDANFVITGKGGICEIQGTAEGEPFSDEEFLSLLALAKTSIADLVRRQKEAVS 237


>gi|209883567|ref|YP_002287424.1| ribonuclease PH [Oligotropha carboxidovorans OM5]
 gi|226736922|sp|B6JCH9|RNPH_OLICO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|209871763|gb|ACI91559.1| ribonuclease PH [Oligotropha carboxidovorans OM5]
          Length = 238

 Score =  308 bits (790), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 146/235 (62%), Positives = 182/235 (77%), Gaps = 1/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  N++R +SL R V KYAEGSC+VKFGDT +L TATLEE++P W++    GW+T
Sbjct: 1   MRPSGRAPNELRPVSLERGVVKYAEGSCMVKFGDTRVLVTATLEERLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  RV+REA +G+Q GR+ EIQR+IGR+LR+ VDL ALG RQI IDCDVIQ
Sbjct: 61  AEYGMLPRATHERVRREASAGKQSGRTVEIQRLIGRSLRTTVDLVALGERQITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DCLQ M+   N  +   VL+ +VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALADCLQWMK-ARNMLKNDNVLRDNVAAISCGIYNGTPVLDLDYA 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  + DANFVMT  G +VEVQG+AER  FSQ+ F  ++ LA++ I  L++LQK
Sbjct: 180 EDSEAETDANFVMTGDGRLVEVQGTAERTPFSQEEFLQLMALAQNGIGRLVELQK 234


>gi|299133261|ref|ZP_07026456.1| ribonuclease PH [Afipia sp. 1NLS2]
 gi|298593398|gb|EFI53598.1| ribonuclease PH [Afipia sp. 1NLS2]
          Length = 238

 Score =  308 bits (789), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 145/235 (61%), Positives = 183/235 (77%), Gaps = 1/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +++R +SL R V KYAEGSC+VKFGDTH+L TATLEE++P W++    GW+T
Sbjct: 1   MRPSGRAPDELRPVSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +RV+REA +G+Q GR+ EIQR+IGR+LR+ VDL ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATHDRVRREASAGKQSGRTVEIQRLIGRSLRTTVDLVALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DCLQ M+   N  +   VL+ +VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALADCLQWMK-ARNMLKNDNVLRDNVAAISCGIHNGTPVLDLDYA 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  + DANFVMT  G +VEVQG+AER  FSQD F  ++ LA+  +  L++LQK
Sbjct: 180 EDSEAETDANFVMTGDGRLVEVQGTAERTPFSQDEFLKLMALAQSGVGRLVELQK 234


>gi|75674392|ref|YP_316813.1| ribonuclease PH [Nitrobacter winogradskyi Nb-255]
 gi|123614308|sp|Q3SW80|RNPH_NITWN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|74419262|gb|ABA03461.1| RNAse PH [Nitrobacter winogradskyi Nb-255]
          Length = 237

 Score =  308 bits (789), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 146/239 (61%), Positives = 183/239 (76%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R +SL R V KYAEGSCLVKFGDTH+L TATLEE++P W++    GW+T
Sbjct: 1   MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+QGGR+ EIQR+IGR+LR+ VDL ALG RQI IDCDVIQ
Sbjct: 61  AEYGMLPRATLERTRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DC+  M+  +     + VL+G+VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALADCVNWMK--ARNMLKAGVLRGNVAAISCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D DANFVMT  G I+EVQG+AE+  FS D F A++ LAK  +A L+ LQK  ++
Sbjct: 179 EDSEADTDANFVMTGEGRIIEVQGTAEKVPFSDDEFLALMALAKKGVARLVDLQKMAVA 237


>gi|90420650|ref|ZP_01228556.1| ribonuclease PH [Aurantimonas manganoxydans SI85-9A1]
 gi|90334941|gb|EAS48702.1| ribonuclease PH [Aurantimonas manganoxydans SI85-9A1]
          Length = 241

 Score =  307 bits (786), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 145/238 (60%), Positives = 186/238 (78%), Gaps = 1/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R +SL R  S++AEGSCLV+FGDTH+L TA+LEE+VP W++N+  GW+T
Sbjct: 1   MRPSKRAFDELRPVSLERNYSRHAEGSCLVRFGDTHVLCTASLEERVPGWLKNSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG+R++REA SG+Q GR+QEIQR++GR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATGDRMRREAASGKQSGRTQEIQRLVGRSLRAVVDLQALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG +VAL DCL  M         ++VLK HVAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGGYVALADCLAWMGQ-RAMVDPAKVLKDHVAAISCGIYKGEPVLDLDYP 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + DANFVMT +G IVE+QG+AE   FSQD F  +L+LA+  I DL+ +Q+  I
Sbjct: 180 EDSAAETDANFVMTGAGGIVEIQGTAEGTPFSQDEFLKLLDLARKGINDLVGMQRQAI 237


>gi|85714061|ref|ZP_01045050.1| ribonuclease PH [Nitrobacter sp. Nb-311A]
 gi|85699187|gb|EAQ37055.1| ribonuclease PH [Nitrobacter sp. Nb-311A]
          Length = 237

 Score =  306 bits (785), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 143/239 (59%), Positives = 183/239 (76%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R +SL R V KYAEGSC+VKFGDTH+L TATLEE++P W++    GW+T
Sbjct: 1   MRPSRRAPDELRAVSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+QGGR+ EIQR+IGR+LR+ +DL ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATLERTRREASAGKQGGRTVEIQRLIGRSLRAAIDLEALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DC+  M+  +     + VL+G+VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALADCVNWMK--ARDMLKASVLRGNVAAISCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D DANFVMT  G I+EVQG+AE+  FS D F A++ LAK  +A L+ LQK  ++
Sbjct: 179 EDSEADTDANFVMTGEGRIIEVQGTAEKVPFSDDEFLALMALAKKGVARLVDLQKMAVA 237


>gi|92115783|ref|YP_575512.1| ribonuclease PH [Nitrobacter hamburgensis X14]
 gi|122418904|sp|Q1QRU5|RNPH_NITHX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|91798677|gb|ABE61052.1| RNAse PH [Nitrobacter hamburgensis X14]
          Length = 237

 Score =  306 bits (784), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 146/239 (61%), Positives = 184/239 (76%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R +SL R V KYAEGSC+VKFGDTH+L TATLEE++P W++    GW+T
Sbjct: 1   MRPSRRAPDELRAVSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+QGGR+ EIQR+IGR+LR+ VDL ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATLERTRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DC+  M+   N  + S VL+ +VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALADCIGWMK-ARNMIKTS-VLRDNVAAVSCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D DANFVMT  G I+EVQG+AE+  FSQD F A+L LAK  +A L+ LQK  ++
Sbjct: 179 EDSEADTDANFVMTGDGRIIEVQGTAEKTPFSQDEFLALLALAKKGVARLVDLQKMAVA 237


>gi|118593717|ref|ZP_01551092.1| ribonuclease PH [Stappia aggregata IAM 12614]
 gi|118433727|gb|EAV40389.1| ribonuclease PH [Stappia aggregata IAM 12614]
          Length = 237

 Score =  305 bits (781), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 144/238 (60%), Positives = 187/238 (78%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R ++L R VSK+AEGSCLVKFGDTH+L TA+LEE+VP W+R    GW+T
Sbjct: 1   MRPSKRAADELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRGQNRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG+R++REA +G+Q GR+QEIQR+IGR+LR+VV+L ALG  QI +DCDVIQ
Sbjct: 61  AEYGMLPRATGDRMRREASAGKQSGRTQEIQRLIGRSLRAVVNLEALGENQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DC++ M+  +      +VLK H+AAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALRDCIEWMK--ARDMVSGEVLKDHIAAISCGIYEGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDST + DANFV+T +G IVE+QG+AE A FS++ F  ++ LAK  I  L+ LQK  I
Sbjct: 179 EDSTAETDANFVLTGAGGIVEIQGTAEGAPFSEEEFGKLMGLAKLGIGKLVDLQKMAI 236


>gi|328541647|ref|YP_004301756.1| ribonuclease PH [polymorphum gilvum SL003B-26A1]
 gi|326411399|gb|ADZ68462.1| Ribonuclease PH [Polymorphum gilvum SL003B-26A1]
          Length = 237

 Score =  305 bits (781), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 146/235 (62%), Positives = 183/235 (77%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R ++L R VSK+AEGSCLVKFGDTH+L TA+LEE+VP W+R  + GW+T
Sbjct: 1   MRPSKRDADELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRGQQRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R++REA  G+Q GR+QEIQR+IGR+LR+VVDL ALG  QI +DCDVIQ
Sbjct: 61  AEYGMLPRATGERMRREASVGKQSGRTQEIQRLIGRSLRAVVDLEALGEYQISVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DC++ M   +       VLK HVAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALRDCIEWMR--ARDMVTKPVLKDHVAAISCGIYKGTPVLDLDYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  + DANFV+T +G IVE+QG+AE A F++D F A+L LAK  I  L+ LQK
Sbjct: 179 EDSAAETDANFVLTGTGGIVEIQGTAEGAPFTEDEFAALLGLAKKGIGRLVDLQK 233


>gi|307943385|ref|ZP_07658729.1| ribonuclease PH [Roseibium sp. TrichSKD4]
 gi|307773015|gb|EFO32232.1| ribonuclease PH [Roseibium sp. TrichSKD4]
          Length = 237

 Score =  305 bits (781), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 146/235 (62%), Positives = 186/235 (79%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R ++L R VSK+AEGSCLVKFGDTH+L TA+LEE+VP W+R  + GW+T
Sbjct: 1   MRPSKRANDELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRGQQRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG+R++REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG  QI +DCDVIQ
Sbjct: 61  AEYGMLPRATGDRMRREASAGKQSGRTQEIQRLIGRSLRAVVDLEALGECQISVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG+WVAL DC++ M+  +       VLK H+AAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGSWVALRDCIEWMK--ARDMVKKDVLKDHIAAISCGIHDGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDST + DANFVMT SG IVE+QG+AE A FS++ F  ++ LAK  I  L+ LQK
Sbjct: 179 EDSTAETDANFVMTGSGGIVEIQGTAEGAPFSEEEFGQLMGLAKAGIGRLVDLQK 233


>gi|86747551|ref|YP_484047.1| ribonuclease PH [Rhodopseudomonas palustris HaA2]
 gi|123099251|sp|Q2J324|RNPH_RHOP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|86570579|gb|ABD05136.1| RNAse PH [Rhodopseudomonas palustris HaA2]
          Length = 237

 Score =  305 bits (780), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 143/239 (59%), Positives = 183/239 (76%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R +SL R V KYAEGSCLVKFGDTH+L TATLEE++P W++    GW+T
Sbjct: 1   MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+ EIQR+IGR+LR++VDL ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATLERTRREAAAGKQNGRTVEIQRLIGRSLRTIVDLQALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DCL  M+  +      QV++ +VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALADCLAWMK--TRNMLKGQVMRDNVAAISCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFVMT  G IVEVQG+AE+  FSQD F A++ LA+  +A L+ LQK  ++
Sbjct: 179 EDSEAETDANFVMTGDGRIVEVQGTAEKTPFSQDEFLALMALAQKGVARLVDLQKMAVA 237


>gi|316931691|ref|YP_004106673.1| ribonuclease PH [Rhodopseudomonas palustris DX-1]
 gi|315599405|gb|ADU41940.1| ribonuclease PH [Rhodopseudomonas palustris DX-1]
          Length = 237

 Score =  303 bits (777), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 143/235 (60%), Positives = 181/235 (77%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R +SL R V KYAEGSCLVKFGDTH+L TATLEE++P W++    GW+T
Sbjct: 1   MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+ EIQR+IGR+LR++VDL ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATLERTRREASAGKQNGRTVEIQRLIGRSLRTIVDLEALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DCL  M+  +     +QVL+ +VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALADCLNWMK--ARNMIKTQVLRDNVAAISCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  + DANFVMT  G +VEVQG+AER  FSQD F  ++ LA+  +A L+ LQK
Sbjct: 179 EDSEAETDANFVMTGDGRLVEVQGTAERTPFSQDEFLQLMALAQKGVARLVDLQK 233


>gi|90421849|ref|YP_530219.1| ribonuclease PH [Rhodopseudomonas palustris BisB18]
 gi|122477603|sp|Q21CI6|RNPH_RHOPB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|90103863|gb|ABD85900.1| RNAse PH [Rhodopseudomonas palustris BisB18]
          Length = 239

 Score =  303 bits (776), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 144/240 (60%), Positives = 184/240 (76%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R +SL R V KYAEGSC+VKFGDTH+L TATLE+++P W++    GW+T
Sbjct: 1   MRPSRRAPDELRAVSLERGVVKYAEGSCMVKFGDTHVLVTATLEDRLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+ EIQR+IGR+LR+ VDL ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATLERTRREASAGKQNGRTVEIQRLIGRSLRATVDLQALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ-LSQVLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGAWVAL DC+  M+   N F+  + VL+ +VAAISCG+  G P++DLDY
Sbjct: 121 ADGGTRTASITGAWVALADCIGWMK-TRNMFKGTAPVLRDNVAAISCGIYNGTPVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  D DANFVMT  G I+EVQG+AE+  FSQD F A++ LAK  +A L+ LQK  ++
Sbjct: 180 AEDSEADTDANFVMTGDGRIIEVQGTAEKTPFSQDEFLALMALAKKGVARLVDLQKMAVA 239


>gi|254502638|ref|ZP_05114789.1| ribonuclease PH [Labrenzia alexandrii DFL-11]
 gi|222438709|gb|EEE45388.1| ribonuclease PH [Labrenzia alexandrii DFL-11]
          Length = 272

 Score =  303 bits (776), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 147/238 (61%), Positives = 184/238 (77%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R ++L R VSK+AEGSCLVKFGDTH+L TA+LEE+VP W+R    GW+T
Sbjct: 36  MRPSKRAADELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRGQNKGWVT 95

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG+R++REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG  QI +DCDVIQ
Sbjct: 96  AEYGMLPRATGSRMRREASAGKQSGRTQEIQRLIGRSLRAVVDLQALGEVQISVDCDVIQ 155

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVAL DC++ M+  +       VL  H+AAISCG+    P++DLDY 
Sbjct: 156 ADGGTRTAAITGAWVALRDCVEWMK--ARDMVSGDVLTDHIAAISCGIYESTPVLDLDYD 213

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDST + DANFVMT SG IVE+QG+AE   FS+D F  ++NLAK  I  L+ LQK  I
Sbjct: 214 EDSTAETDANFVMTGSGGIVEIQGTAEGKPFSEDEFGQLMNLAKAGIKRLVDLQKMAI 271


>gi|39933406|ref|NP_945682.1| ribonuclease PH [Rhodopseudomonas palustris CGA009]
 gi|192288763|ref|YP_001989368.1| ribonuclease PH [Rhodopseudomonas palustris TIE-1]
 gi|61215953|sp|Q6NCY8|RNPH_RHOPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736930|sp|B3Q968|RNPH_RHOPT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|39647252|emb|CAE25773.1| ribonuclease PH [Rhodopseudomonas palustris CGA009]
 gi|192282512|gb|ACE98892.1| ribonuclease PH [Rhodopseudomonas palustris TIE-1]
          Length = 237

 Score =  303 bits (775), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 143/235 (60%), Positives = 180/235 (76%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R +SL R V KYAEGSCLVKFGDTH+L TATLEE++P W++    GW+T
Sbjct: 1   MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+ EIQR+IGR+LR++VDL ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATLERTRREASAGKQNGRTVEIQRLIGRSLRTIVDLEALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DCL  M+  +      QVL+ +VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALADCLNWMK--ARNMIKGQVLRDNVAAISCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  + DANFVMT  G +VEVQG+AER  FSQD F  ++ LA+  +A L+ LQK
Sbjct: 179 EDSEAETDANFVMTGDGRLVEVQGTAERTPFSQDEFLQLMALAQKGVARLVDLQK 233


>gi|114705078|ref|ZP_01437986.1| ribonuclease PH [Fulvimarina pelagi HTCC2506]
 gi|114539863|gb|EAU42983.1| ribonuclease PH [Fulvimarina pelagi HTCC2506]
          Length = 240

 Score =  300 bits (769), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 139/240 (57%), Positives = 187/240 (77%), Gaps = 1/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  + MRE+SLT  V+++AEGSCLVKFG+T +L TA+LEE++P W++N+  GW+T
Sbjct: 1   MRPSKRPADSMREVSLTTGVNRHAEGSCLVKFGETQVLCTASLEERIPPWLKNSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG+R++REA +G+QGGR+ EIQR+IGR+LR+VVD+ ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATGDRMRREASAGKQGGRTVEIQRLIGRSLRAVVDMGALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +VAL +CL+ ME   +  Q   VLKGHVAA+SCG+    P++DLDY 
Sbjct: 121 ADGGTRTASITGGYVALAECLKWME-ARSMCQRKNVLKGHVAAVSCGIYKNEPVLDLDYA 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + DANFVMT +G IVE+QG+AE   FS++ F  ++ LAK  I +L++ Q   + +
Sbjct: 180 EDSVAETDANFVMTGAGGIVEIQGTAEGTPFSEEEFTKLMALAKKGIGELVEAQTAALGD 239


>gi|91974875|ref|YP_567534.1| ribonuclease PH [Rhodopseudomonas palustris BisB5]
 gi|123735818|sp|Q13E56|RNPH_RHOPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|91681331|gb|ABE37633.1| RNAse PH [Rhodopseudomonas palustris BisB5]
          Length = 237

 Score =  300 bits (768), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 141/239 (58%), Positives = 181/239 (75%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R +SL R V KYAEGSCLVKFGDTH+L TATLEE++P W++    GW+T
Sbjct: 1   MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+ EIQR+IGR+LR++VDL ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATLERTRREAAAGKQNGRTVEIQRLIGRSLRAIVDLQALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DCL  M+  +       VL+ +VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALADCLGWMK--TRNMIKGTVLRDNVAAISCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFVMT  G I+EVQG+AE+  FSQD F A++ LA+  +  L+ LQK  ++
Sbjct: 179 EDSEAETDANFVMTGDGRIIEVQGTAEKTPFSQDEFLALMALAQKGVTRLVDLQKMAVA 237


>gi|115522381|ref|YP_779292.1| ribonuclease PH [Rhodopseudomonas palustris BisA53]
 gi|115516328|gb|ABJ04312.1| RNAse PH [Rhodopseudomonas palustris BisA53]
          Length = 243

 Score =  298 bits (764), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 139/239 (58%), Positives = 182/239 (76%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R +SL R V KYAEGSCLVKFGDTH+L TA+LEE++P W++    GW+T
Sbjct: 7   MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTASLEERLPPWLKGQGRGWVT 66

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +RE+ +G+Q GR+ EIQR+IGR+LR+ VDL A+G RQI +DCDV+Q
Sbjct: 67  AEYGMLPRATHERTRRESAAGKQSGRTVEIQRLIGRSLRASVDLEAMGERQITVDCDVLQ 126

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVAL DCL  M+  +     ++VL+ +VAAISCG+  G P++DLDY 
Sbjct: 127 ADGGTRTAAITGAWVALADCLAWMK--ARNMIKAKVLRDNVAAISCGIYNGTPVLDLDYA 184

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFVMT  G I+EVQG+AE+  FSQD F A++ LA+  +A L+ LQ   ++
Sbjct: 185 EDSEAETDANFVMTGDGRIIEVQGTAEKTPFSQDEFLALMALAQKGVARLVDLQNMAVA 243


>gi|148251804|ref|YP_001236389.1| ribonuclease PH [Bradyrhizobium sp. BTAi1]
 gi|166228266|sp|A5E8I9|RNPH_BRASB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|146403977|gb|ABQ32483.1| RNAse PH [Bradyrhizobium sp. BTAi1]
          Length = 237

 Score =  298 bits (762), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 137/239 (57%), Positives = 183/239 (76%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R +SL R V KYAEGSCLVKFGDTH+L TATLE+++P W++    GWIT
Sbjct: 1   MRPSRRAPDELRPVSLERGVVKYAEGSCLVKFGDTHVLVTATLEDRLPPWLKGQGRGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+ EIQR+IGR+LR+ +DL ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATLERTRREASAGKQTGRTVEIQRLIGRSLRTAIDLEALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DC++ M+  +     ++VL+ +VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALADCIKWMK--TRNMLKTEVLRANVAAISCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFVMT  G I+EVQG+AE+  F++  F A++ LA+  +A L+ LQK  ++
Sbjct: 179 EDSEAETDANFVMTGDGRIIEVQGTAEKTPFTEAEFLALMALARKGVARLVDLQKMAVA 237


>gi|27375785|ref|NP_767314.1| ribonuclease PH [Bradyrhizobium japonicum USDA 110]
 gi|61216053|sp|Q89WK4|RNPH_BRAJA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|27348923|dbj|BAC45939.1| Ribonuclease PH [Bradyrhizobium japonicum USDA 110]
          Length = 237

 Score =  296 bits (758), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 137/235 (58%), Positives = 179/235 (76%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R ++L R V KYAEGSCLVKFGDTH+L TATLE+++P W++    GW+T
Sbjct: 1   MRPSRRAPDELRPVTLERGVVKYAEGSCLVKFGDTHVLVTATLEDRLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+ EIQR+IGR+LR++++L ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATSERTRREASAGKQSGRTVEIQRLIGRSLRTIINLEALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DC+  M+  +     + VL+ +VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALADCVNWMK--ARNMVKANVLRDNVAAISCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS    DANFVMT  G I+EVQG+AER  F+QD   A++ LA+  IA L+ LQK
Sbjct: 179 EDSEAQTDANFVMTGDGRIIEVQGTAEREPFTQDELLALMALAQKGIARLVDLQK 233


>gi|154246476|ref|YP_001417434.1| ribonuclease PH [Xanthobacter autotrophicus Py2]
 gi|226736952|sp|A7IID4|RNPH_XANP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|154160561|gb|ABS67777.1| ribonuclease PH [Xanthobacter autotrophicus Py2]
          Length = 237

 Score =  296 bits (758), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 137/235 (58%), Positives = 179/235 (76%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  ++MR +S  R V ++AEGSCLVKFGDTH+L +ATLEE++P W++    GW+T
Sbjct: 1   MRPSKRAADEMRAVSFERGVMRHAEGSCLVKFGDTHVLVSATLEERLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R +RE+ +G+Q GR+QEIQR+IGR+LRSV DL ALG +QI +DCDV+Q
Sbjct: 61  AEYSMLPRATHDRTRRESTTGKQSGRTQEIQRLIGRSLRSVTDLVALGEKQITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAW+AL+DCL  M   S   ++   LK HVAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGAWIALYDCLSWMRQRSMVKEIP--LKDHVAAVSCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  + DANFVMT +G IVE+QG+AE+  FSQD    +L+LA+  +  L+ LQK
Sbjct: 179 EDSVAETDANFVMTGTGGIVEIQGTAEKTPFSQDELLGLLSLARSGVEKLVGLQK 233


>gi|300024890|ref|YP_003757501.1| ribonuclease PH [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526711|gb|ADJ25180.1| ribonuclease PH [Hyphomicrobium denitrificans ATCC 51888]
          Length = 237

 Score =  296 bits (758), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 138/235 (58%), Positives = 179/235 (76%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R+ +++R +S+ R VSK+AEGSCL+KFGDTH+L TA+LEE++P W++    GW+T
Sbjct: 1   MRPSKRKPDELRRVSIERAVSKHAEGSCLIKFGDTHVLCTASLEERLPQWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE  SG   GR+QEIQR++GRALR+VVDL  LG RQI +DCDVIQ
Sbjct: 61  AEYSMLPRATHERTRREVTSGHPSGRTQEIQRLVGRALRAVVDLPKLGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVALHDC+Q M+          VL+ HVAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALHDCIQWMK--MRDMVKDGVLRDHVAAVSCGIYKGDPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  D D+NFVMT +G IVE+QG+AE   F+++ F  +L LAK  I +L++LQK
Sbjct: 179 EDSNADADSNFVMTGTGGIVEIQGTAETTPFTEERFGDLLTLAKKGIGELVQLQK 233


>gi|304392746|ref|ZP_07374686.1| ribonuclease PH [Ahrensia sp. R2A130]
 gi|303295376|gb|EFL89736.1| ribonuclease PH [Ahrensia sp. R2A130]
          Length = 239

 Score =  296 bits (757), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 141/233 (60%), Positives = 181/233 (77%), Gaps = 2/233 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  ++MR +++ R  SK+AEGSCL+KFGDTH+L TA+LEE+VP W+R    GW+TA
Sbjct: 5   RPSGRAPDEMRAVTIERGFSKHAEGSCLIKFGDTHVLCTASLEERVPPWLRGAGKGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ ALG RQI +DCDVIQA
Sbjct: 65  EYGMLPRSTGGRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMKALGERQISLDCDVIQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL +CL  M+  +       VL  +VAAISCG+  G P++DLDY E
Sbjct: 125 DGGTRTASITGAYVALKECLDWMQ--ARSMIGGDVLIDNVAAISCGIYEGTPVLDLDYDE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           DS  D DANFVMT  G IVE+QG+AE A FS++ F A+++LA   I +L+ LQ
Sbjct: 183 DSEADTDANFVMTGKGGIVEIQGTAEAAPFSREEFSALMDLASKGIGELVDLQ 235


>gi|158425913|ref|YP_001527205.1| ribonuclease PH [Azorhizobium caulinodans ORS 571]
 gi|172047841|sp|A8HV93|RNPH_AZOC5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|158332802|dbj|BAF90287.1| ribonuclease PH [Azorhizobium caulinodans ORS 571]
          Length = 238

 Score =  296 bits (757), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 142/242 (58%), Positives = 180/242 (74%), Gaps = 10/242 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  ++MR +S  R V ++AEGSCLVKFGDTH+L  ATLEE++P W++    GW+T
Sbjct: 1   MRPSRRANDEMRAVSFERGVLRHAEGSCLVKFGDTHVLVAATLEERLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +REA +G+Q GR+QEIQR+IGR+LRSV DL  LG RQI +DCDV+Q
Sbjct: 61  AEYSMLPRATLERTRREATTGKQSGRTQEIQRLIGRSLRSVTDLVGLGERQITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV----LKGHVAAISCGMLCGYPIVD 176
           ADGGTRTAAITGAWVALHDCL  M      +Q S +    LK +VAAISCG+  G P++D
Sbjct: 121 ADGGTRTAAITGAWVALHDCLNWM------YQRSMLKTIPLKENVAAISCGIHEGTPVLD 174

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           LDY EDS  + DANFVMT +G IVE+QG+AE+  FSQD   ++L LA+  + +L++LQK 
Sbjct: 175 LDYAEDSKAETDANFVMTGTGGIVEIQGTAEKTPFSQDELLSLLALARKGVGELVELQKQ 234

Query: 237 VI 238
            I
Sbjct: 235 AI 236


>gi|146337341|ref|YP_001202389.1| ribonuclease PH [Bradyrhizobium sp. ORS278]
 gi|166228267|sp|A4YJR3|RNPH_BRASO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|146190147|emb|CAL74139.1| RNase PH [Bradyrhizobium sp. ORS278]
          Length = 237

 Score =  296 bits (757), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 137/239 (57%), Positives = 182/239 (76%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  ++MR +SL R V KYAEGSCLVKFGDTH+L TATLE+++P W++    GWIT
Sbjct: 1   MRPSRRAPDEMRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEDRLPPWLKGQGRGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+ EIQR+IGR+LR+ +DL ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATLERTRREASAGKQTGRTVEIQRLIGRSLRTAIDLEALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DC++ M+  +     ++VL+ +VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALADCIRWMK--ARNMIKTEVLRTNVAAVSCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFVMT  G I+EVQG+AE+  FS+  F A++ LA+  +  L+ LQK  ++
Sbjct: 179 EDSEAETDANFVMTGDGRIIEVQGTAEKTPFSEAEFLALMALARKGVGRLVDLQKMAVA 237


>gi|323137091|ref|ZP_08072171.1| ribonuclease PH [Methylocystis sp. ATCC 49242]
 gi|322397852|gb|EFY00374.1| ribonuclease PH [Methylocystis sp. ATCC 49242]
          Length = 238

 Score =  290 bits (743), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 134/240 (55%), Positives = 178/240 (74%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  ++MR +S  R V++YAEGSCLVKFG+TH+L  A+LE+K P W+R    GW+T
Sbjct: 1   MRPSKRAPDEMRPVSFERGVARYAEGSCLVKFGNTHVLCAASLEDKPPPWLRGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+ +G+  GR+QEIQR+IGR+LR+V +L A+G RQI+IDCDVIQ
Sbjct: 61  AEYSMLPRATHTRTRRESSAGKLTGRTQEIQRLIGRSLRAVTNLPAMGERQIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAW+AL DC + M   S        L+ HVAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWLALRDCFEWMR--SRSIIKDNPLRDHVAAVSCGIFNGTPVIDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDST + DANFV+T SG +VE+Q +AE A FS D   ++L LA+  +ADL+ LQK  +++
Sbjct: 179 EDSTAETDANFVITGSGGLVEIQATAEVAVFSPDELTSLLTLAQGGVADLVALQKAALAS 238


>gi|298293788|ref|YP_003695727.1| ribonuclease PH [Starkeya novella DSM 506]
 gi|296930299|gb|ADH91108.1| ribonuclease PH [Starkeya novella DSM 506]
          Length = 237

 Score =  289 bits (740), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 136/240 (56%), Positives = 180/240 (75%), Gaps = 4/240 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S RQ ++MR +S  R V ++AEGSCLVKFG+TH+L  ATLEE++P W++    GW+T
Sbjct: 1   MRPSRRQPDEMRAVSFERGVLRHAEGSCLVKFGETHVLVAATLEERLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +RE  +G+  GR+ EIQR+IGR+LR+VVDL  LG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATHERTRREVTAGKPSGRTHEIQRLIGRSLRTVVDLEKLGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGAW+ALHDCL  M+    +  L+ + L+ H+AA+SCG++ G P +DLDY
Sbjct: 121 ADGGTRTASITGAWIALHDCLSWMK---TRGMLATIPLRDHIAAVSCGIVDGEPRLDLDY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS+   D NFVMT +G  VE+QG+AE+  F++D F AML LA+  +A L+ LQK  +S
Sbjct: 178 VEDSSAHTDVNFVMTGTGGFVEIQGTAEKTPFTEDEFGAMLGLARKGVAKLVDLQKLAVS 237


>gi|188579737|ref|YP_001923182.1| ribonuclease PH [Methylobacterium populi BJ001]
 gi|226736916|sp|B1ZJ73|RNPH_METPB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|179343235|gb|ACB78647.1| ribonuclease PH [Methylobacterium populi BJ001]
          Length = 237

 Score =  287 bits (735), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 137/239 (57%), Positives = 175/239 (73%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  + MR+++L R V++YAEGSCLV FG+T +L TA+LEE+ P W+R +  GW+T
Sbjct: 1   MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASLEERGPPWLRGSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE  SG+  GR+QEIQR+IGR+LR+V +L ALG RQI +DCDVIQ
Sbjct: 61  AEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVALHDC   M   +        LK HVAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALHDCFAWMR--ARSIISVDPLKDHVAAVSCGIYKGQPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFV+T  G IVEVQG+AE   FS+  F  +L LAK  IA+L++LQ+  I+
Sbjct: 179 EDSAAETDANFVVTGKGGIVEVQGTAEMEPFSEAQFIELLALAKGGIANLVELQRKAIA 237


>gi|312113394|ref|YP_004010990.1| ribonuclease PH [Rhodomicrobium vannielii ATCC 17100]
 gi|311218523|gb|ADP69891.1| ribonuclease PH [Rhodomicrobium vannielii ATCC 17100]
          Length = 237

 Score =  287 bits (735), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 136/235 (57%), Positives = 174/235 (74%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S RQ   +R +S  R  S +AEGSCL+KFG+TH+L TA+LE++VP W++    GWIT
Sbjct: 1   MRPSKRQAGDLRPVSFQRAFSHHAEGSCLIKFGNTHVLCTASLEDRVPPWLKGQGRGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G Q GRSQEIQR+IGR+LR+VVDL ALG RQI++DCDV+Q
Sbjct: 61  AEYGMLPRATSDRTRREATTGHQSGRSQEIQRLIGRSLRAVVDLQALGERQIMVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVALHDC Q M   +      + +K +VAAISCG+  G  ++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALHDCFQWMR--ARDMLRGEPMKDNVAAISCGIYKGEAVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  + DANFV T  G IVE+Q +AE+  FS++    +  LAK  IA+L+ LQK
Sbjct: 179 EDSDAEADANFVFTGKGQIVEIQATAEKGAFSEERMAELTALAKKGIAELVNLQK 233


>gi|296447435|ref|ZP_06889360.1| ribonuclease PH [Methylosinus trichosporium OB3b]
 gi|296255055|gb|EFH02157.1| ribonuclease PH [Methylosinus trichosporium OB3b]
          Length = 237

 Score =  287 bits (734), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 135/239 (56%), Positives = 175/239 (73%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  ++MR +S  R V++YAEGSCLVKFG+TH+L  A+LE+K P W+R    GW+T
Sbjct: 1   MRPSKRAPDEMRPVSFERGVARYAEGSCLVKFGNTHVLCAASLEDKPPPWLRGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+ SG+  GR+QEIQR+IGR+LR+V  L ALG RQ+++DCDV+Q
Sbjct: 61  AEYAMLPRATHTRTRRESSSGKPSGRTQEIQRLIGRSLRAVTHLPALGERQVVVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+GAW+ALHDC Q M   S        L+ HVAA+SCG+    P++DLDYG
Sbjct: 121 ADGGTRTAAISGAWLALHDCFQWMR--SRSIIKENPLRDHVAAVSCGVCDAGPVIDLDYG 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST   DANFV+T  G +VEVQ +AE A F++    AML+LA+  I  LI++QK  I+
Sbjct: 179 EDSTAKTDANFVITGGGGLVEVQSTAEAAVFTEADLSAMLSLARAGIGKLIEMQKAAIA 237


>gi|254559085|ref|YP_003066180.1| ribonuclease PH [Methylobacterium extorquens DM4]
 gi|254266363|emb|CAX22127.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Methylobacterium extorquens DM4]
          Length = 237

 Score =  287 bits (734), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 136/239 (56%), Positives = 174/239 (72%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  + MR+++L R V++YAEGSCLV FG+T +L TA+LEE+ P W+R +  GW+T
Sbjct: 1   MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASLEERGPPWLRGSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE  SG+  GR+QEIQR+IGR+LR+V +L ALG RQI +DCDVIQ
Sbjct: 61  AEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVALHDC   M   +        LK HVAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALHDCFAWMR--ARSIISVDPLKDHVAAVSCGIYKGQPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D DANFV+T  G IVEVQG+AE   F+ + F  +L LAK  +A L++LQ+  I+
Sbjct: 179 EDSAADTDANFVVTGKGGIVEVQGTAEMEPFTDEQFLELLRLAKGGVAGLVELQRKAIA 237


>gi|220924628|ref|YP_002499930.1| ribonuclease PH [Methylobacterium nodulans ORS 2060]
 gi|254808593|sp|B8IFR7|RNPH_METNO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|219949235|gb|ACL59627.1| ribonuclease PH [Methylobacterium nodulans ORS 2060]
          Length = 237

 Score =  286 bits (731), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 135/238 (56%), Positives = 176/238 (73%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   ++R+++L R V++YAEGSCLV FG+T +L TA+LEE+ P W+R +  GWIT
Sbjct: 1   MRPSKRAPEELRKVTLERGVARYAEGSCLVTFGETRVLCTASLEERGPSWLRGSGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE  +G+  GR+QEIQR+IGR+LR+VV+L A+G RQI+IDCDV+Q
Sbjct: 61  AEYAMLPRATHERNRREVNAGKPSGRTQEIQRLIGRSLRAVVNLPAIGERQIVIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVALH+C   M   S        ++ HVAA+SCG+  G PI+DLDY 
Sbjct: 121 ADGGTRTASITGAWVALHECFTWMR--SRSIISVDPMRDHVAAVSCGIHKGTPILDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + DANFV+T SG IVEVQG+AE   FS++ F  +L LAK  +A L+ LQK  +
Sbjct: 179 EDSAAETDANFVITGSGGIVEVQGTAEVTPFSEEEFLGLLRLAKSGVAQLVALQKQAV 236


>gi|170742381|ref|YP_001771036.1| ribonuclease PH [Methylobacterium sp. 4-46]
 gi|226736918|sp|B0UP55|RNPH_METS4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|168196655|gb|ACA18602.1| ribonuclease PH [Methylobacterium sp. 4-46]
          Length = 237

 Score =  285 bits (730), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 134/238 (56%), Positives = 177/238 (74%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R+++L + V++YAEGSCLV FG+T +L TA+LEE+ P W+R +  GW+T
Sbjct: 1   MRPSKRAPDELRKVTLEKGVARYAEGSCLVTFGETKVLCTASLEERGPPWLRGSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE  +G+  GR+QEIQR+IGR+LR+VV+L A+G RQI++DCDV+Q
Sbjct: 61  AEYAMLPRATHERNRREVTAGKPSGRTQEIQRLIGRSLRAVVNLPAIGERQIVVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVALH+C   M            ++ HVAAISCG+  G PI+DLDY 
Sbjct: 121 ADGGTRTASITGAWVALHECFTWMR--GRSIISVDPMRDHVAAISCGIHKGIPILDLDYD 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  D DANFV+T SG IVEVQG+AE A FS++ F  +L LAK  +A L+ LQK  +
Sbjct: 179 EDSAADTDANFVITGSGGIVEVQGTAEIAPFSEEQFLGLLRLAKAGVAQLVALQKQAV 236


>gi|163849851|ref|YP_001637894.1| ribonuclease PH [Methylobacterium extorquens PA1]
 gi|240137077|ref|YP_002961546.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Methylobacterium extorquens AM1]
 gi|226736915|sp|A9VZR7|RNPH_METEP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|163661456|gb|ABY28823.1| ribonuclease PH [Methylobacterium extorquens PA1]
 gi|240007043|gb|ACS38269.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Methylobacterium extorquens AM1]
          Length = 237

 Score =  285 bits (730), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 135/239 (56%), Positives = 174/239 (72%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  + MR+++L R V++YAEGSCLV FG+T +L TA+LEE+ P W+R +  GW+T
Sbjct: 1   MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASLEERGPPWLRGSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE  SG+  GR+QEIQR+IGR+LR+V +L ALG RQI +DCDVIQ
Sbjct: 61  AEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVALHDC   M   +        LK HVAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALHDCFAWMR--ARSIISVDPLKDHVAAVSCGIYKGQPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFV+T  G IVEVQG+AE   F+ + F  +L LAK  +A L++LQ+  I+
Sbjct: 179 EDSAAETDANFVVTGKGGIVEVQGTAEMEPFTDEQFLELLRLAKGGVAGLVELQRKAIA 237


>gi|218528482|ref|YP_002419298.1| ribonuclease PH [Methylobacterium chloromethanicum CM4]
 gi|254808592|sp|B7L092|RNPH_METC4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|218520785|gb|ACK81370.1| ribonuclease PH [Methylobacterium chloromethanicum CM4]
          Length = 237

 Score =  285 bits (730), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 135/239 (56%), Positives = 174/239 (72%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  + MR+++L R V++YAEGSCLV FG+T +L TA+LEE+ P W+R +  GW+T
Sbjct: 1   MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASLEERGPPWLRGSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE  SG+  GR+QEIQR+IGR+LR+V +L ALG RQI +DCDVIQ
Sbjct: 61  AEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVALHDC   M   +        LK HVAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALHDCFAWMR--ARSIISVDPLKDHVAAVSCGIYKGQPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFV+T  G IVEVQG+AE   F+ + F  +L LAK  +A L++LQ+  I+
Sbjct: 179 EDSAAETDANFVVTGKGGIVEVQGTAELEPFTDEQFLELLRLAKGGVAGLVELQRKAIA 237


>gi|217978304|ref|YP_002362451.1| ribonuclease PH [Methylocella silvestris BL2]
 gi|254808594|sp|B8ERN7|RNPH_METSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|217503680|gb|ACK51089.1| ribonuclease PH [Methylocella silvestris BL2]
          Length = 237

 Score =  283 bits (724), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 134/239 (56%), Positives = 175/239 (73%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R ++  R V++YAEGSCL+KFG TH+L TA+LE+K P W+R    GW++
Sbjct: 1   MRPSQRAADELRPVTFERNVARYAEGSCLIKFGSTHVLCTASLEDKPPAWLRGQGRGWVS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R KRE+ +G+  GR+QEIQR+IGR+LR+V +L  LG RQI IDCDV+Q
Sbjct: 61  AEYAMLPRATHTRTKRESTTGKPSGRTQEIQRLIGRSLRAVTNLQGLGERQITIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVALHDCL+ M   S    L   L+ HVAAISCG+  G  ++DLDY 
Sbjct: 121 ADGGTRTAAITGAWVALHDCLKWMRQRSIIKDLP--LRDHVAAISCGVSNGESVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFV+T SG +VEVQ +AE A F++    AML LA+  I  L+++QK  ++
Sbjct: 179 EDSAAETDANFVITGSGSLVEVQATAEGAVFTETQLTAMLALARGGITTLVEMQKAAVA 237


>gi|182677771|ref|YP_001831917.1| ribonuclease PH [Beijerinckia indica subsp. indica ATCC 9039]
 gi|226736889|sp|B2IH14|RNPH_BEII9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|182633654|gb|ACB94428.1| ribonuclease PH [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 237

 Score =  283 bits (723), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 139/240 (57%), Positives = 173/240 (72%), Gaps = 6/240 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R    +R ++L R V++YAEGSCLVKFG TH+L TA+LE+K P W+R    GW+T
Sbjct: 1   MRPSKRAAQDLRPVTLERNVARYAEGSCLVKFGGTHVLCTASLEDKPPPWLRGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE++SG+  GR+QEIQR+IGR+LR+V +L ALG RQI +DCDV+Q
Sbjct: 61  AEYAMLPRATHTRTRRESMSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCS--NKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ADGGTRTAAITGAWVALHDC + M   S   +F L +    HVAA+SCG+  G  ++DLD
Sbjct: 121 ADGGTRTAAITGAWVALHDCCKWMHGRSIIKEFPLRE----HVAAVSCGIYQGEAVLDLD 176

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y EDS    DANFVMT  G +VEVQ SAE A FS+D    +L LAK  IA L+ +QK  I
Sbjct: 177 YEEDSVAQTDANFVMTGGGALVEVQASAEGAVFSEDELSVLLALAKGGIAQLVNIQKLAI 236


>gi|84684654|ref|ZP_01012555.1| ribonuclease PH [Maritimibacter alkaliphilus HTCC2654]
 gi|84667633|gb|EAQ14102.1| ribonuclease PH [Rhodobacterales bacterium HTCC2654]
          Length = 250

 Score =  276 bits (706), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 133/239 (55%), Positives = 177/239 (74%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +++R IS+   V+K+AEGSCL+K GDTH+L TA+LEE+VP W+RNT  GW+T
Sbjct: 14  MRPSGRNVDELRPISIETGVTKHAEGSCLIKVGDTHVLCTASLEERVPPWLRNTGMGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA +G+QGGR+ EIQR+IGR+LR+ VD  ALG RQI +DCDVIQ
Sbjct: 74  AEYGMLPRSTSSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRQALGERQITVDCDVIQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +Q +    +   +S  L   VAA+SCG+  G P++DLDY 
Sbjct: 134 ADGGTRCASITGGWVALRLAVQKLMKAGDI--VSDPLIDPVAAVSCGIYAGQPVLDLDYP 191

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD NFVMT +G ++EVQ SAE +TFS+     ++ LA+  +A+L+  QK  ++
Sbjct: 192 EDSEAGVDGNFVMTGTGRLIEVQMSAEGSTFSRAQMDDLMGLAEKGVAELVAAQKAAVA 250


>gi|83313597|ref|YP_423861.1| ribonuclease PH [Magnetospirillum magneticum AMB-1]
 gi|82948438|dbj|BAE53302.1| RNase PH [Magnetospirillum magneticum AMB-1]
          Length = 241

 Score =  275 bits (704), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 136/240 (56%), Positives = 174/240 (72%), Gaps = 6/240 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R + L   VS++AEGSC+ KFGDTH+L TA++EEKVP ++RNT  GW+T
Sbjct: 3   MRPSGRAPDQLRTVILETGVSRHAEGSCIAKFGDTHVLCTASVEEKVPPFLRNTGKGWVT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+ EIQR+IGR+LRSV DL+A+G RQI IDCDV+Q
Sbjct: 63  AEYGMLPRSTHTRTDREAAKGKQSGRTHEIQRLIGRSLRSVTDLAAMGERQIKIDCDVLQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV--LKGHVAAISCGMLCGYPIVDLD 178
           ADGGTRTA+ITGA+VALH   Q +     + +L +   L  HVAAISCG+  G  ++DLD
Sbjct: 123 ADGGTRTASITGAFVALHLAFQRL----VRLELLKAIPLTDHVAAISCGIYEGVAVLDLD 178

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y EDS    DANFVMT +G IVE+QG+AE   FS+  F  + +LA+  I  L++ QK  +
Sbjct: 179 YPEDSNAQADANFVMTGTGGIVEIQGTAEERPFSRTQFLELTDLAEAGIRQLVEAQKKAL 238


>gi|83594970|ref|YP_428722.1| ribonuclease PH [Rhodospirillum rubrum ATCC 11170]
 gi|123525443|sp|Q2RN60|RNPH_RHORT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|83577884|gb|ABC24435.1| RNAse PH [Rhodospirillum rubrum ATCC 11170]
          Length = 240

 Score =  275 bits (703), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 136/242 (56%), Positives = 172/242 (71%), Gaps = 6/242 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  + +R I L    SK+AEGSC+ +FGDTH+L TA++EE+VP W+R    GW+T
Sbjct: 1   MRPSGRAVDSLRSIVLEPGYSKHAEGSCMARFGDTHVLCTASIEERVPGWMRGGGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  GRQ GR+QEIQR+IGR+LRSV DL  +G  QI +DCDVIQ
Sbjct: 61  AEYGMLPRSTHTRTDREAARGRQSGRTQEIQRLIGRSLRSVTDLKKIGEIQIRLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV--LKGHVAAISCGMLCGYPIVDLD 178
           ADGGTRTAAITG+WVAL+  L   E    K  L  +  L  HVAA+SCG+  G  ++DLD
Sbjct: 121 ADGGTRTAAITGSWVALYQALARFE----KLGLGALPPLTDHVAAVSCGLCDGVAVLDLD 176

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y EDST   DANFV+T +G IVE+QG+AE + F+Q  F  +L LA+  I +L+ LQK  +
Sbjct: 177 YAEDSTAQADANFVLTGTGGIVEIQGTAETSPFAQAQFMELLALAQKGITELVALQKAAL 236

Query: 239 SN 240
           ++
Sbjct: 237 AS 238


>gi|170749350|ref|YP_001755610.1| ribonuclease PH [Methylobacterium radiotolerans JCM 2831]
 gi|226736917|sp|B1M4N1|RNPH_METRJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|170655872|gb|ACB24927.1| ribonuclease PH [Methylobacterium radiotolerans JCM 2831]
          Length = 237

 Score =  275 bits (702), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 135/239 (56%), Positives = 172/239 (71%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R +SL R VS+YAEGSCLV FG+T +L TA+LEE+ P W+R +  GW+T
Sbjct: 1   MRPSKRAADELRPVSLERAVSRYAEGSCLVSFGNTRVLCTASLEERAPPWLRGSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE  SG+  GR+QEIQR+IGR+LR+V +L A+G RQI IDCDVIQ
Sbjct: 61  AEYAMLPRATHERTRREVGSGKPSGRTQEIQRLIGRSLRAVTNLPAMGERQITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVALHDC   M   +        L+ HVAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGAWVALHDCFAWMR--TRSIISVDPLRDHVAAVSCGLYKGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFV+T  G IVEVQG+AE   F+Q+    +L LA+     L+ LQK+ I+
Sbjct: 179 EDSAAETDANFVLTGRGGIVEVQGTAEMEPFTQEQLLELLGLARAGTERLVALQKEAIA 237


>gi|46201192|ref|ZP_00055593.2| COG0689: RNase PH [Magnetospirillum magnetotacticum MS-1]
          Length = 239

 Score =  273 bits (699), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 136/240 (56%), Positives = 173/240 (72%), Gaps = 6/240 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R + L   VS++AEGSC+ KFGDTH+L TA++EEKVP ++RNT  GW+T
Sbjct: 1   MRPSGRAPDQLRTVILETGVSRHAEGSCIAKFGDTHVLCTASVEEKVPPFLRNTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+ EIQR+IGR+LRSV DL A+G RQI IDCDV+Q
Sbjct: 61  AEYGMLPRSTHTRTDREAAKGKQSGRTHEIQRLIGRSLRSVTDLVAMGERQIKIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV--LKGHVAAISCGMLCGYPIVDLD 178
           ADGGTRTA+ITGA+VALH   Q +     + +L +   L  HVAAISCG+  G  ++DLD
Sbjct: 121 ADGGTRTASITGAFVALHLAFQRL----VRLELLKAIPLTDHVAAISCGIYEGTAVLDLD 176

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y EDS    DANFVMT +G IVE+QG+AE   FS+  F  + +LA+  I  L++ QK  +
Sbjct: 177 YPEDSNAQADANFVMTGNGGIVEIQGTAEERPFSRAQFLELTDLAEAGIRQLVEAQKKAL 236


>gi|295691344|ref|YP_003595037.1| ribonuclease PH [Caulobacter segnis ATCC 21756]
 gi|295433247|gb|ADG12419.1| ribonuclease PH [Caulobacter segnis ATCC 21756]
          Length = 238

 Score =  273 bits (698), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 129/238 (54%), Positives = 174/238 (73%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +QMR ++L   V++YAEGSCL+ FG T +L TAT+EE +P W+RN   GW+T
Sbjct: 1   MRPSERAPDQMRAVTLETGVNRYAEGSCLISFGHTKVLVTATVEESLPGWLRNKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRGRREAAAGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVVQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVAL    +++ D       +  + G VAA+SCG+    P++DLDY 
Sbjct: 121 ADGGTRTAAITGAWVALRLATKYLLD--EGVLKTDPIVGQVAAVSCGVFNDTPVLDLDYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS+ + D+NFV+T++G IVE+Q + E+  FS+  F A+  LA+  I +L  LQ+  I
Sbjct: 179 EDSSAEADSNFVLTNAGDIVEIQATGEKRGFSRAEFEALFGLAEKGIGELFTLQRAAI 236


>gi|117923369|ref|YP_863986.1| ribonuclease PH [Magnetococcus sp. MC-1]
 gi|117607125|gb|ABK42580.1| RNAse PH [Magnetococcus sp. MC-1]
          Length = 243

 Score =  272 bits (696), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 131/235 (55%), Positives = 170/235 (72%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+SGR+ ++MR +++TR  +K+AEGSCL+ FGDT +L TAT+EE  P W+RN   GW+T
Sbjct: 5   LRISGRRPDEMRAVTITRHYTKHAEGSCLIAFGDTQVLCTATVEESQPRWMRNEDRGWVT 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+ EIQR+IGRA+R+VVDL ALG R I +DCDVIQ
Sbjct: 65  AEYGMLPRSTNVRMGREAAKGKQSGRTLEIQRLIGRAMRAVVDLQALGKRTIWLDCDVIQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA+HD +  +            L+ HVAA+SCGM+ G P +DLDY 
Sbjct: 125 ADGGTRTASITGAFVAMHDAVTGL--LKAGLIRHNPLRDHVAAVSCGMVAGMPALDLDYQ 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  D D NFVMT +G  VE+QG+AE   F++  F +M  LA   I  L++ QK
Sbjct: 183 EDSRCDTDMNFVMTGAGGFVEIQGTAEGVPFTRPEFESMAALADQGIKALVQAQK 237


>gi|144897368|emb|CAM74232.1| RNase PH [Magnetospirillum gryphiswaldense MSR-1]
          Length = 241

 Score =  272 bits (695), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 136/238 (57%), Positives = 173/238 (72%), Gaps = 4/238 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I L    S++AEGSCL KFGDTH+L TA++EE+VP ++RNT  GW+TA
Sbjct: 4   RPSGRAFDQLRVIRLETGFSRHAEGSCLAKFGDTHVLCTASVEERVPPFLRNTGKGWVTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+Q GR+ EIQR+IGR+LR+V DL+A+G  QI +DCDV+QA
Sbjct: 64  EYGMLPRSTHTRTDREAAKGKQSGRTHEIQRLIGRSLRAVTDLTAMGEMQIKLDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTA+ITGAWVALH   Q + +     +LS V L   VAAISCG+  G  ++DLDY 
Sbjct: 124 DGGTRTASITGAWVALHLAFQKLVEAG---KLSAVPLIDQVAAISCGIYEGQAVLDLDYP 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS+   DANFV+T +G IVEVQG+AE   FS+D F  +L LA+  + +L  LQK  +
Sbjct: 181 EDSSAQADANFVLTGTGGIVEVQGTAEERPFSRDQFTQLLELAEKGVTELALLQKKAV 238


>gi|254491824|ref|ZP_05105003.1| ribonuclease PH [Methylophaga thiooxidans DMS010]
 gi|224463302|gb|EEF79572.1| ribonuclease PH [Methylophaga thiooxydans DMS010]
          Length = 239

 Score =  271 bits (694), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 128/239 (53%), Positives = 176/239 (73%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ N++R++S+TR  +K+AEGS LV+FGDT +L TA++EE++P ++R +  GW+T
Sbjct: 1   MRPSGRQANELRQVSITRNYTKHAEGSVLVEFGDTKVLCTASVEERIPPFLRGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R++REA  G+QGGR+ EIQR+IGR+LR+ ++L ALG R I IDCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMQREAARGKQGGRTMEIQRLIGRSLRAAINLKALGERSITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D + H+     K      L G VA++S G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAFVALQDAINHL--IKTKKLKKSPLFGQVASVSVGIYNGTPVLDLDYD 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS+ + D N VM D+G  +E+QG+AE   F  D   +ML+LA   I  L+  Q+D ++
Sbjct: 179 EDSSAETDMNVVMNDAGAYIELQGTAEGHAFRADELQSMLDLASHGIEQLMIKQRDALA 237


>gi|239948344|ref|ZP_04700097.1| ribonuclease PH [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239922620|gb|EER22644.1| ribonuclease PH [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 239

 Score =  271 bits (694), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 133/238 (55%), Positives = 170/238 (71%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ NQ+R ISL       AEGSCL+K G+TH++ +AT E  VP ++R    GWIT
Sbjct: 1   MRQSGRKSNQLRPISLELSPLVNAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST  R+KRE   G+QGGR+QEIQR+IGRA+R V+DL  LG RQIIIDCDVI 
Sbjct: 61  AEYGMLPGSTSQRIKRETALGKQGGRTQEIQRLIGRAMRCVIDLKKLGERQIIIDCDVIN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VALH  ++ +     +      L   +AAISCG+  G  I+DLDY 
Sbjct: 121 ADGGTRTAAITGSYVALHLVIRSL--MKKRVLKVNPLISQIAAISCGIYKGEAILDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  +VD+NFV   +G+++EVQG+AE+  FS++ F AML LAK  +A+L KLQ  V+
Sbjct: 179 EDSDAEVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGVAELFKLQNQVL 236


>gi|15892898|ref|NP_360612.1| ribonuclease PH [Rickettsia conorii str. Malish 7]
 gi|229586977|ref|YP_002845478.1| ribonuclease PH [Rickettsia africae ESF-5]
 gi|238651083|ref|YP_002916941.1| ribonuclease PH [Rickettsia peacockii str. Rustic]
 gi|21759407|sp|Q92GZ7|RNPH_RICCN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|259494127|sp|C3PP75|RNPH_RICAE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|259494128|sp|C4K2U2|RNPH_RICPU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|15620088|gb|AAL03513.1| ribonuclease PH [Rickettsia conorii str. Malish 7]
 gi|228022027|gb|ACP53735.1| Ribonuclease PH [Rickettsia africae ESF-5]
 gi|238625181|gb|ACR47887.1| ribonuclease PH [Rickettsia peacockii str. Rustic]
          Length = 239

 Score =  271 bits (694), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 134/238 (56%), Positives = 170/238 (71%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ NQ+R ISL       AEGSCL+K G+TH++ +AT E  VP ++R    GWIT
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST  R+KREA  G+QGGR+QEIQR+IGRA+R V+D+  LG RQIIIDCDVI 
Sbjct: 61  AEYGMLPGSTSQRIKREAALGKQGGRTQEIQRLIGRAMRCVIDVRKLGERQIIIDCDVIN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VALH  ++ +     +      L   +AAISCG+  G  I+DLDY 
Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSL--MKKRVLKVNPLISQIAAISCGIYKGEAILDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  DVD+NFV   +G+++EVQG+AE+  FS++ F AML LAK   A+L KLQ  V+
Sbjct: 179 EDSDADVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGAAELFKLQNQVL 236


>gi|34581401|ref|ZP_00142881.1| ribonuclease PH [Rickettsia sibirica 246]
 gi|28262786|gb|EAA26290.1| ribonuclease PH [Rickettsia sibirica 246]
          Length = 239

 Score =  271 bits (694), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 134/238 (56%), Positives = 170/238 (71%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ NQ+R ISL       AEGSCL+K G+TH++ +AT E  VP ++R    GWIT
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST  R+KREA  G+QGGR+QEIQR+IGRA+R V+D+  LG RQIIIDCDVI 
Sbjct: 61  AEYGMLPGSTSQRIKREATLGKQGGRTQEIQRLIGRAMRCVIDVRKLGERQIIIDCDVIN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VALH  ++ +     +      L   +AAISCG+  G  I+DLDY 
Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSL--MKKRVLKVNPLISQIAAISCGIYKGEAILDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  DVD+NFV   +G+++EVQG+AE+  FS++ F AML LAK   A+L KLQ  V+
Sbjct: 179 EDSDADVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGAAELFKLQNQVL 236


>gi|288956860|ref|YP_003447201.1| ribonuclease PH [Azospirillum sp. B510]
 gi|288909168|dbj|BAI70657.1| ribonuclease PH [Azospirillum sp. B510]
          Length = 239

 Score =  271 bits (694), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 131/238 (55%), Positives = 171/238 (71%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R +SL    S+YAEGSC+V+FG+TH+L TA+++E VP +++NT  GW+T
Sbjct: 1   MRPSGRALDQLRTVSLEPGFSRYAEGSCMVRFGNTHVLCTASVDETVPRFLKNTGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+Q GR+QEIQR+IGRALR+V D SA+G +QI IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRTDREAAKGKQSGRTQEIQRLIGRALRAVTDRSAMGEKQIKIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VALH   QH+        +   L   VAA+SCG+  G  ++DLDY 
Sbjct: 121 ADGGTRTAAITGSYVALHLAFQHLIQIGALKTMP--LTDQVAAVSCGIYQGNAVLDLDYD 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS    DANFV+T    IVE+QG+AE + FS+  F  +L LA+  + +L  LQK  +
Sbjct: 179 EDSKAQADANFVLTGKAGIVEIQGTAEESPFSEPQFMELLALARKGVTELAALQKQAL 236


>gi|119900252|ref|YP_935465.1| ribonuclease PH [Azoarcus sp. BH72]
 gi|166228264|sp|A1KCM3|RNPH_AZOSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|119672665|emb|CAL96579.1| ribonuclease PH [Azoarcus sp. BH72]
          Length = 239

 Score =  271 bits (692), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 132/240 (55%), Positives = 178/240 (74%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S RQ N++R + LTRR +++AEGS LV+FGDT +L TA++EE VP +++    GW+T
Sbjct: 1   MRPSQRQANELRPVRLTRRYTRHAEGSVLVEFGDTRVLCTASVEEAVPPFLKGKGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVDL+ALG RQ++IDCDV+Q
Sbjct: 61  AEYGMLPRATHTRSAREAAKGKQTGRTQEIQRLIGRSLRAVVDLAALGERQVVIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VALHD L+ +   + K   +  +   VAAIS G++ G P++DLDY 
Sbjct: 121 ADGGTRTASITGAYVALHDALEGLV-AAGKLA-ANPMTDFVAAISVGIVDGVPVLDLDYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT SG I+EVQG+AE   FS+    A+++LA+  I  L++LQK  ++ 
Sbjct: 179 EDSGCDTDMNVVMTGSGGIIEVQGTAEGTPFSRTELNALIDLAEAGIGRLVELQKAALAG 238


>gi|157828824|ref|YP_001495066.1| ribonuclease PH [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933550|ref|YP_001650339.1| ribonuclease PH [Rickettsia rickettsii str. Iowa]
 gi|166228313|sp|A8GT33|RNPH_RICRS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043770|sp|B0BUM3|RNPH_RICRO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157801305|gb|ABV76558.1| ribonuclease PH [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908637|gb|ABY72933.1| ribonuclease PH [Rickettsia rickettsii str. Iowa]
          Length = 239

 Score =  270 bits (690), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 134/238 (56%), Positives = 170/238 (71%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ NQ+R ISL       AEGSCL+K G+TH++ +AT E  VP ++R    GWIT
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST  R+KREA  G+QGGR+QEIQR+IGRA+R V+D+  LG RQIIIDCDVI 
Sbjct: 61  AEYGMLPGSTSQRIKREAALGQQGGRTQEIQRLIGRAMRCVIDVRKLGERQIIIDCDVIN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VALH  ++ +     +      L   +AAISCG+  G  I+DLDY 
Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSL--MKKRVLKVNPLISQIAAISCGIYKGEVILDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  DVD+NFV   +G+++EVQG+AE+  FS++ F AML LAK   A+L KLQ  V+
Sbjct: 179 EDSDADVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGAAELFKLQNQVL 236


>gi|220936120|ref|YP_002515019.1| ribonuclease PH [Thioalkalivibrio sp. HL-EbGR7]
 gi|254808601|sp|B8GPB2|RNPH_THISH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|219997430|gb|ACL74032.1| ribonuclease PH [Thioalkalivibrio sp. HL-EbGR7]
          Length = 239

 Score =  270 bits (690), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 128/235 (54%), Positives = 170/235 (72%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ +Q+REI  TRR +K+AEGS LV+FGDT +L TA+++++ P W+RN   GW+T
Sbjct: 1   MRPSGRQPDQLREIRFTRRFTKHAEGSVLVEFGDTRVLCTASVDDRTPPWLRNKGSGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+QGGR+QEIQR+IGR+LR+ VDL  LG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRSTHERMAREAARGKQGGRTQEIQRLIGRSLRAAVDLEGLGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+G +VALHD + H+     K + + +  G VA++S G+  G P++DLDY 
Sbjct: 121 ADGGTRTASISGGYVALHDAITHLMK-QGKLKRNPLF-GAVASVSVGIYQGVPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  + D N VM D+   +EVQG+AE   F  D   +ML LA+  I D+I  Q+
Sbjct: 179 EDSNAETDMNVVMNDANAFIEVQGTAEGHAFRMDELNSMLALAQSGIQDIIAAQR 233


>gi|157803502|ref|YP_001492051.1| ribonuclease PH [Rickettsia canadensis str. McKiel]
 gi|166228312|sp|A8EY33|RNPH_RICCK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157784765|gb|ABV73266.1| ribonuclease PH [Rickettsia canadensis str. McKiel]
          Length = 239

 Score =  270 bits (690), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 134/238 (56%), Positives = 169/238 (71%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ NQ+R ISL       AEGSCL+K G TH++ +AT E  VP ++R    GW+T
Sbjct: 1   MRQSGRKSNQLRPISLELSPLVNAEGSCLIKIGKTHVICSATCETTVPPFLRGQNQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST  R+KREAV G+QGGR+QEIQR+IGRA+R V+DL  LG RQIIIDCDVI 
Sbjct: 61  AEYGMLPSSTSQRIKREAVLGKQGGRTQEIQRLIGRAMRCVIDLKKLGERQIIIDCDVIN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG+++ALH  ++ +   S        L   +AAISCG+  G  I+DLDY 
Sbjct: 121 ADGGTRTAAITGSYIALHLAIRLLMKKS--ILKVNPLISQIAAISCGIYKGETILDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  +VD NFV   +G+++EVQG+AE+  FS++ F AML LAK   A+L KLQ  V+
Sbjct: 179 EDSDAEVDINFVFAGNGNLIEVQGTAEKKPFSEEQFLAMLKLAKVGAAELFKLQNQVL 236


>gi|224824865|ref|ZP_03697972.1| ribonuclease PH [Lutiella nitroferrum 2002]
 gi|224603358|gb|EEG09534.1| ribonuclease PH [Lutiella nitroferrum 2002]
          Length = 238

 Score =  270 bits (689), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 133/240 (55%), Positives = 176/240 (73%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  + +R ++LTR  +K+AEGS LV+FGDT ++ TA+++E VP +++    GW+T
Sbjct: 1   MRPSSRPNDALRRVTLTRGYTKHAEGSVLVEFGDTKVICTASVDESVPGFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R++REA SG+Q GR+QEIQR+IGR+LR+VVDL  LG RQI IDCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMRREAASGKQSGRTQEIQRLIGRSLRAVVDLGKLGERQIQIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VALHD +  +     K Q S + +  VAA+S G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAFVALHDAISGL-IAQGKLQESPI-RDFVAAVSVGVFEGRPVLDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT SGH VEVQG+AE   FS+    AML LA+  + +LI +QK  ++ 
Sbjct: 179 EDSACETDMNVVMTGSGHFVEVQGTAEGVPFSRAELDAMLRLAEQGVGELIAIQKAALAG 238


>gi|114769782|ref|ZP_01447392.1| ribonuclease PH [alpha proteobacterium HTCC2255]
 gi|114549487|gb|EAU52369.1| ribonuclease PH [alpha proteobacterium HTCC2255]
          Length = 237

 Score =  270 bits (689), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 133/239 (55%), Positives = 173/239 (72%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  + MR I +    +K+AEGSCL+K GDTH+L TA++E++ P W+RNT  GW+T
Sbjct: 1   MRPSGRAIDIMRPIEVEVGFTKHAEGSCLIKCGDTHVLCTASVEDRTPPWLRNTGMGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R +REA SG+Q GR+QEIQR+IGR+LR+ +D   LG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRSTGSRNRREAASGKQSGRTQEIQRLIGRSLRAGIDRLTLGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG W+AL   +  M    +  +    L  HVAA+SCG+  G PI+DLDY 
Sbjct: 121 ADGGTRCASITGGWIALRLAINAMIKAGDLKE--DPLTEHVAAVSCGIYGGQPILDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    DANFVMT S  +VE+QGSAE ATF +  F ++++LA+  I++LI  QK  IS
Sbjct: 179 EDSEAGTDANFVMTGSNGLVEIQGSAEGATFDRTEFNSLMDLAEKGISELIIAQKAAIS 237


>gi|157964776|ref|YP_001499600.1| ribonuclease PH [Rickettsia massiliae MTU5]
 gi|157844552|gb|ABV85053.1| Ribonuclease PH [Rickettsia massiliae MTU5]
          Length = 250

 Score =  270 bits (689), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 134/238 (56%), Positives = 169/238 (71%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ NQ+R ISL       AEGSCL+K G+TH++ +AT E  VP ++R    GWIT
Sbjct: 12  MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 71

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST  R+KREA  G+QGGR+QEIQR+IGRA+R V+D+  LG RQIIIDCDVI 
Sbjct: 72  AEYGMLPGSTSQRIKREAALGKQGGRTQEIQRLIGRAMRCVIDVKKLGERQIIIDCDVIN 131

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VALH  ++ +     +      L   +AAISCG+  G  I+DLDY 
Sbjct: 132 ADGGTRTAAITGSYVALHLAIRSL--MKKRVLKVNPLISQIAAISCGIYKGEAILDLDYL 189

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  DVD+NFV   +G+++EVQG+AE+  FS+  F AML LAK   A+L KLQ  V+
Sbjct: 190 EDSDADVDSNFVFAGNGNLIEVQGTAEKNPFSEGQFLAMLKLAKGGAAELFKLQNQVL 247


>gi|67458795|ref|YP_246419.1| ribonuclease PH [Rickettsia felis URRWXCal2]
 gi|75535816|sp|Q4UJN4|RNPH_RICFE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|67004328|gb|AAY61254.1| Ribonuclease PH [Rickettsia felis URRWXCal2]
          Length = 239

 Score =  269 bits (688), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 131/238 (55%), Positives = 169/238 (71%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ NQ+R ISL       AEGSCL+K G+TH++ +AT E  VP ++R    GW+T
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST  R+KREA  G+QGGR+QEIQR+IGR +R V+DL  LG RQIIIDCDVI 
Sbjct: 61  AEYGMLPGSTSQRIKREAAQGKQGGRTQEIQRLIGRNMRCVIDLKKLGERQIIIDCDVIN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VALH  ++ +     +      L   +AA+SCG+  G  I+DLDY 
Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSL--MKKRILKVNPLISQIAAVSCGIYKGEAILDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  +VD+NFV   +G+++EVQG+AE+  FS++ F AML LAK   A+L KLQ  V+
Sbjct: 179 EDSDAEVDSNFVFAGNGNLIEVQGTAEKEPFSEEQFIAMLKLAKGGAAELFKLQNQVL 236


>gi|330447145|ref|ZP_08310795.1| ribonuclease PH [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491336|dbj|GAA05292.1| ribonuclease PH [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 238

 Score =  269 bits (687), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 128/240 (53%), Positives = 170/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  NQ+R I++TR+ + +AEGS LV+FG+T ++ TA++EE VP W++    GW+T
Sbjct: 1   MRPSGRSANQVRPITITRQYTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+QGGR+ EIQR+I R+LR+ VDL  LG + I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNRREAANGKQGGRTMEIQRLIARSLRAAVDLEVLGEQMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D + +M            LKG VAA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTASITGAMVALVDAINYM--LEKGMIKKNPLKGMVAAVSVGIYNGEPICDLEYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G ++E+QG+AE   FS +   AML LAKD I+D+I +QK  + N
Sbjct: 179 EDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGISDIISMQKQALEN 238


>gi|15604475|ref|NP_220993.1| ribonuclease PH [Rickettsia prowazekii str. Madrid E]
 gi|6226021|sp|Q9ZCT5|RNPH_RICPR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|3861169|emb|CAA15069.1| RIBONUCLEASE PH (rph) [Rickettsia prowazekii]
 gi|292572257|gb|ADE30172.1| Ribonuclease PH [Rickettsia prowazekii Rp22]
          Length = 240

 Score =  268 bits (686), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 130/238 (54%), Positives = 171/238 (71%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ NQ+R ISL       AEGSCL+K G+TH++ +AT E  VP ++R    GWIT
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGM+P ST +R+KREA  G+QGGR+QEIQR+IGRA+R V++L  LG RQIIIDCDVI 
Sbjct: 61  AEYGMIPGSTSHRIKREAALGKQGGRTQEIQRLIGRAMRCVINLQKLGERQIIIDCDVIN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VALH  ++ +     +      L   +AAISCG+  G  ++DLDY 
Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSL--MKKRILKVNPLISQIAAISCGIYKGNAVLDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  +VD+NFV   +G+++EVQG+AE+  FS++ F AML LAK  + +L KLQ  V+
Sbjct: 179 EDSDAEVDSNFVFACNGNLIEVQGTAEKEPFSEEQFLAMLKLAKSGVVELFKLQNQVL 236


>gi|159046003|ref|YP_001534797.1| ribonuclease PH [Dinoroseobacter shibae DFL 12]
 gi|189043761|sp|A8LPD1|RNPH_DINSH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157913763|gb|ABV95196.1| ribonuclease PH [Dinoroseobacter shibae DFL 12]
          Length = 237

 Score =  268 bits (686), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 130/239 (54%), Positives = 175/239 (73%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ ++MR +S+    +++AEGSCL+  G+T +L TA++EE+VP ++RNT  GW+T
Sbjct: 1   MRPSGRQTHEMRGVSIETGFTRHAEGSCLISMGETRVLCTASVEERVPPFLRNTGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+QEIQR+IGR+LR+ VD  ALG RQI IDCDVIQ
Sbjct: 61  AEYGMLPRATHTRGRREAAAGKQSGRTQEIQRLIGRSLRAGVDRVALGERQITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITGAWVAL   +  +    +   ++  L  HVAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGAWVALRLAVNKLMKAGDI--ITDPLTDHVAAVSCGLYAGQPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    DANFVMT SG ++EVQGSAE A FS++    +++LA+  +A+L+  QK   S
Sbjct: 179 EDSEAGTDANFVMTGSGGLIEVQGSAEGAPFSRNALNTLMDLAEVGVAELVAAQKAATS 237


>gi|16124407|ref|NP_418971.1| ribonuclease PH [Caulobacter crescentus CB15]
 gi|221233090|ref|YP_002515526.1| ribonuclease PH [Caulobacter crescentus NA1000]
 gi|239977592|sp|B8GXP2|RNPH_CAUCN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|239977593|sp|P0CAW5|RNPH_CAUCR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|13421265|gb|AAK22139.1| ribonuclease PH [Caulobacter crescentus CB15]
 gi|220962262|gb|ACL93618.1| ribonuclease PH [Caulobacter crescentus NA1000]
          Length = 238

 Score =  268 bits (685), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 129/238 (54%), Positives = 172/238 (72%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +Q+R ++L   V++YAEGSCL+ FG T +L TAT+EE VP W+RN   GW+T
Sbjct: 1   MRPSERAPDQLRAVTLETGVNRYAEGSCLIGFGHTKVLVTATVEENVPGWMRNKGAGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATHTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVVQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVAL    +++ D     +   +L G VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGAWVALRLATKYLLD-EGVLKTDPIL-GQVAAVSCGVFNGVPVLDLDYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D+NFV+T  G IVE+Q + E+  F++  F ++  LA+  I +L  LQ+  I
Sbjct: 179 EDSNAEADSNFVLTGVGDIVEIQATGEKRGFTRAEFESLYGLAEKGINELFALQRAAI 236


>gi|148927584|ref|ZP_01811056.1| ribonuclease PH [candidate division TM7 genomosp. GTL1]
 gi|147887071|gb|EDK72567.1| ribonuclease PH [candidate division TM7 genomosp. GTL1]
          Length = 244

 Score =  268 bits (684), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 128/241 (53%), Positives = 173/241 (71%), Gaps = 10/241 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MRL+ R  N++REI++TR+ +K+AEGS LV FGDT ++ TA++   VP ++++   GW+T
Sbjct: 6   MRLANRANNKLREINITRKFTKHAEGSVLVTFGDTKVICTASVTNGVPPFLKDKGQGWVT 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R++REA  G+Q GR+QEIQR+I R+LR+ VDL+A+G   I IDCDVIQ
Sbjct: 66  AEYGMLPRSTHERMQREAAKGKQVGRTQEIQRLIARSLRAAVDLTAMGENTITIDCDVIQ 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMED----CSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ADGGTRTAAITG  VALHD LQ++ +     +N FQ        VA++S G++ G P++D
Sbjct: 126 ADGGTRTAAITGGCVALHDALQYLTEKKQLATNPFQ------QFVASVSVGIINGEPMLD 179

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           LDY EDS  D D N VMT+ G  +EVQG+AE+  F Q    A+L+LAK  I +L K+QK 
Sbjct: 180 LDYQEDSNADTDMNVVMTEQGGFIEVQGTAEKTVFQQSELDALLHLAKQGITELTKMQKQ 239

Query: 237 V 237
           +
Sbjct: 240 I 240


>gi|91205422|ref|YP_537777.1| ribonuclease PH [Rickettsia bellii RML369-C]
 gi|122425711|sp|Q1RIX6|RNPH_RICBR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|91068966|gb|ABE04688.1| Ribonuclease PH [Rickettsia bellii RML369-C]
          Length = 239

 Score =  268 bits (684), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 129/240 (53%), Positives = 169/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ NQ+R ISL       AEGSCL+K G+TH++ +A+ +  VP ++RN   GWIT
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSASYDTTVPPFLRNQNRGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP ST  R KREAV G+Q GR+QEIQR+IGR +RS++DL  LG RQI IDCDVI 
Sbjct: 61  AEYSMLPGSTSQRNKREAVQGKQSGRTQEIQRLIGRTMRSIIDLQKLGERQITIDCDVIN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VALH  ++ +     +      L   VAA+SCG+    PI+DLDY 
Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSL--MKKRILKVNPLINQVAAVSCGIYKDQPILDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  +VD+NFV   +G+++E+QG+AE+  FS++ F  ML LAK  +A+L KLQ  V+ N
Sbjct: 179 EDSDAEVDSNFVFAGNGNLIEIQGTAEKKPFSEEQFLEMLKLAKAGVAELFKLQNQVLLN 238


>gi|157827025|ref|YP_001496089.1| ribonuclease PH [Rickettsia bellii OSU 85-389]
 gi|166228311|sp|A8GW25|RNPH_RICB8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157802329|gb|ABV79052.1| ribonuclease PH [Rickettsia bellii OSU 85-389]
          Length = 239

 Score =  268 bits (684), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 129/240 (53%), Positives = 169/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ NQ+R ISL       AEGSCL+K G+TH++ +A+ +  VP ++RN   GWIT
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSASYDTTVPPFLRNQNRGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP ST  R KREAV G+Q GR+QEIQR+IGR +RS++DL  LG RQI IDCDVI 
Sbjct: 61  AEYSMLPGSTSQRNKREAVQGKQSGRTQEIQRLIGRTMRSIIDLQKLGERQITIDCDVIN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VALH  ++ +     +      L   VAA+SCG+    PI+DLDY 
Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSL--MKERILKVNPLINQVAAVSCGIYKDQPILDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  +VD+NFV   +G+++E+QG+AE+  FS++ F  ML LAK  +A+L KLQ  V+ N
Sbjct: 179 EDSDAEVDSNFVFAGNGNLIEIQGTAEKKPFSEEQFLEMLKLAKAGVAELFKLQNQVLLN 238


>gi|167947111|ref|ZP_02534185.1| ribonuclease PH [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 239

 Score =  268 bits (684), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 127/223 (56%), Positives = 165/223 (73%), Gaps = 2/223 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ +Q+R I  TR  +K+AEGS LV+FGDT ++ TA++EE+VP W+R    GW+T
Sbjct: 1   MRPSGRQPDQLRPIRFTRHYTKHAEGSVLVEFGDTKVICTASVEERVPGWMRGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+IGR+LR+ +DL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTDSRMGREASRGKQGGRTMEIQRLIGRSLRAAIDLQALGERSIALDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAW+ALHD +QH+         +  + G VA++S G+  G PI+DLDY 
Sbjct: 121 ADGGTRTASITGAWIALHDAVQHI--LQQDLLKTDPMIGPVASVSVGVHKGTPILDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           EDS+ + D N VM D G  +EVQG+AE A +S+    AML+LA
Sbjct: 179 EDSSAETDMNVVMNDQGGFIEVQGTAEAAAYSRQELDAMLDLA 221


>gi|146278691|ref|YP_001168850.1| ribonuclease PH [Rhodobacter sphaeroides ATCC 17025]
 gi|166228309|sp|A4WVY1|RNPH_RHOS5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145556932|gb|ABP71545.1| RNAse PH [Rhodobacter sphaeroides ATCC 17025]
          Length = 237

 Score =  267 bits (683), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 128/235 (54%), Positives = 174/235 (74%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR +S+   V K+AEGSCL++ G+TH+L +A++E+K P +++NT  GW+T
Sbjct: 1   MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ +D SALG RQI+IDCDV+Q
Sbjct: 61  AEYGMLPRATTSRNRREATAGKQSGRTQEIQRLIGRALRAGIDRSALGERQIVIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +        +S  +  HVAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKL--LKAGIVVSDPIVDHVAAVSCGIYAGQPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDST   D NFV+T    ++EVQ SAE A+FS+D    +L+LA+  IADL+  QK
Sbjct: 179 EDSTAGTDGNFVLTGRQRLIEVQMSAEGASFSRDEMGQLLDLAEAGIADLVAAQK 233


>gi|90581389|ref|ZP_01237184.1| putative ribonuclease PH [Vibrio angustum S14]
 gi|90437366|gb|EAS62562.1| putative ribonuclease PH [Vibrio angustum S14]
          Length = 238

 Score =  267 bits (683), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 128/240 (53%), Positives = 169/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q+R I++TR+ + +AEGS LV+FG+T ++ TA++EE VP W++    GW+T
Sbjct: 1   MRPSGRSATQVRPITITRQYTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA SG+QGGR+ EIQR+I R+LR+ VDL+ LG + I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLNVLGEQMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D + +M            LKG VAA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTASITGAMVALVDAINYM--LEKGMIKKSPLKGMVAAVSVGIYKGEPICDLEYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G ++E+QG+AE   FS +   AML LAKD I D+I +QK  + N
Sbjct: 179 EDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGITDIISMQKQALEN 238


>gi|149204370|ref|ZP_01881337.1| ribonuclease PH [Roseovarius sp. TM1035]
 gi|149142255|gb|EDM30302.1| ribonuclease PH [Roseovarius sp. TM1035]
          Length = 238

 Score =  267 bits (682), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 130/236 (55%), Positives = 175/236 (74%), Gaps = 2/236 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  ++MR +S+   V K+AEGSCL+K GDTH+L TAT+EE+VP +++ +  GW+T
Sbjct: 1   MRPSGRNLSEMRSVSIETGVLKHAEGSCLIKIGDTHVLCTATIEERVPPFVKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R++REA +G+QGGR+ EIQR+IGR+LR+ VD  ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +Q +    +   LS  L   VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALKLAVQKLMKAGDV--LSDPLIDPVAAVSCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           EDS   VD NF+MT +  ++EVQ SAE AT+S+D   A+L+LA+  +  L+  Q++
Sbjct: 179 EDSEAGVDGNFIMTGTKRLIEVQMSAEGATYSRDQMNALLDLAELGVDQLVAKQRE 234


>gi|114762203|ref|ZP_01441671.1| ribonuclease PH [Pelagibaca bermudensis HTCC2601]
 gi|114545227|gb|EAU48230.1| ribonuclease PH [Roseovarius sp. HTCC2601]
          Length = 237

 Score =  267 bits (682), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 128/235 (54%), Positives = 173/235 (73%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  ++MR +S+   V+K+AEGSCL+K GDTH++ TA+LE +VP +I+ +  GW+T
Sbjct: 1   MRPSGRDLSEMRPVSIETGVTKHAEGSCLIKMGDTHVICTASLEPRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R++REA +G+QGGR+ EIQR+IGR+LR+ VD  ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMRREATTGKQGGRTVEIQRLIGRSLRAGVDRVALGERQISVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR AAITG WVAL   +  +    +   ++  L   VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCAAITGGWVALRLAVNKLMKAGDV--ITDPLISPVAAVSCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS   VD NF++   G ++EVQ SAE ATFS+D    +L+LA+  +A L++ QK
Sbjct: 179 EDSEAGVDGNFILRGDGQLIEVQMSAEGATFSRDQMGTLLDLAESGVAQLVEAQK 233


>gi|161170278|gb|ABX59248.1| RNase PH [uncultured marine bacterium EB000_55B11]
 gi|297183806|gb|ADI19929.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 252

 Score =  267 bits (682), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 132/239 (55%), Positives = 172/239 (71%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  + MR I +    +K+AEGSCL+K GDTH+L TA++ ++ P W+RNT  GW+T
Sbjct: 16  MRPSGRAIDIMRPIEVEVGFTKHAEGSCLIKCGDTHVLCTASVXDRTPPWLRNTGMGWVT 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R +REA SG+Q GR+QEIQR+IGR+LR+ +D   LG RQI +DCDV+Q
Sbjct: 76  AEYGMLPRSTGSRNRREAASGKQSGRTQEIQRLIGRSLRAGIDRLTLGERQITVDCDVLQ 135

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG W+AL   +  M    +  +    L  HVAA+SCG+  G PI+DLDY 
Sbjct: 136 ADGGTRCASITGGWIALRLAINAMIKAGDLKE--DPLTEHVAAVSCGIYGGQPILDLDYA 193

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    DANFVMT S  +VE+QGSAE ATF +  F ++++LA+  I++LI  QK  IS
Sbjct: 194 EDSEAGTDANFVMTGSNGLVEIQGSAEGATFDRTEFNSLMDLAEKGISELIIAQKAAIS 252


>gi|107022076|ref|YP_620403.1| ribonuclease PH [Burkholderia cenocepacia AU 1054]
 gi|116689020|ref|YP_834643.1| ribonuclease PH [Burkholderia cenocepacia HI2424]
 gi|170732309|ref|YP_001764256.1| ribonuclease PH [Burkholderia cenocepacia MC0-3]
 gi|254246044|ref|ZP_04939365.1| RNase PH [Burkholderia cenocepacia PC184]
 gi|123245179|sp|Q1BY75|RNPH_BURCA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228269|sp|A0K5H3|RNPH_BURCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736892|sp|B1JXM2|RNPH_BURCC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|105892265|gb|ABF75430.1| RNAse PH [Burkholderia cenocepacia AU 1054]
 gi|116647109|gb|ABK07750.1| RNAse PH [Burkholderia cenocepacia HI2424]
 gi|124870820|gb|EAY62536.1| RNase PH [Burkholderia cenocepacia PC184]
 gi|169815551|gb|ACA90134.1| ribonuclease PH [Burkholderia cenocepacia MC0-3]
          Length = 246

 Score =  267 bits (682), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 134/237 (56%), Positives = 175/237 (73%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ +++R+++LTR  +K+AEGS LV+FGDT +L TA++ E+VP ++R    GW+TA
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVLCTASVAERVPEFLRERGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   + K   S +   HVAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSTL-IAAGKLARSPITD-HVAAISVGVYEGAPVLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VMT +G  VEVQG+AE   FS+    A+L+LA+  IA+L++LQKDV+
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQGGIAELVQLQKDVL 241


>gi|297537277|ref|YP_003673046.1| ribonuclease PH [Methylotenera sp. 301]
 gi|297256624|gb|ADI28469.1| ribonuclease PH [Methylotenera sp. 301]
          Length = 243

 Score =  267 bits (682), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 133/238 (55%), Positives = 170/238 (71%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R S R  NQ+R + + R  +K+AEGS LVKFGDTH+L TA++EEKVP +++    GW+TA
Sbjct: 7   RPSQRANNQLRNVEIIRHYTKHAEGSVLVKFGDTHVLCTASVEEKVPGFLKGKGQGWVTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG+R+ REA  G+Q GR+QEIQR+IGR+LR+++DL  LG R I +DCDVIQA
Sbjct: 67  EYGMLPRSTGSRMDREAAKGKQSGRTQEIQRLIGRSLRAIIDLEKLGERSIHMDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VALHD +  +    N    +  LK  VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAYVALHDAISTL--LKNGKLTTSPLKQGVAAISVGVYKGTPVLDLDYIE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMT  G  VE+QG+AE   FS+D   AML+LA   I  L+  Q +V+S
Sbjct: 185 DSDCDTDMNVVMTADGGFVEIQGTAEGEPFSRDAMNAMLDLAAHGIKQLVIKQNEVLS 242


>gi|254784432|ref|YP_003071860.1| ribonuclease PH [Teredinibacter turnerae T7901]
 gi|259494129|sp|C5BLF9|RNPH_TERTT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|237687110|gb|ACR14374.1| tRNA nucleotidyltransferase [Teredinibacter turnerae T7901]
          Length = 239

 Score =  266 bits (681), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 130/240 (54%), Positives = 177/240 (73%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R SGR  NQ+R+IS+TR  +++AEGS LV FGDT ++ TAT+EE VP +++    GW+T
Sbjct: 2   LRPSGRAANQLRDISITRHYTRHAEGSVLVCFGDTKVICTATVEEGVPRFLKGEGQGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R+ REA  G+QGGR+ EIQR+IGR+LR+ VDL+ LG   I IDCDVIQ
Sbjct: 62  AEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLTLLGEHSITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L+ M+   +K   +  L+  VA++S GM  G  ++DLDY 
Sbjct: 122 ADGGTRTASITGACVALVDALRFMQ--RSKMIQTDPLRHLVASVSVGMYQGEAVLDLDYP 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE+A FS+D F  M  LAK+ I++L + Q+  +++
Sbjct: 180 EDSNADTDMNMVMTEQGGLIEIQGTAEQAPFSEDEFIQMFTLAKEGISELCEFQRQSLTD 239


>gi|126463642|ref|YP_001044756.1| ribonuclease PH [Rhodobacter sphaeroides ATCC 17029]
 gi|166228308|sp|A3PNR8|RNPH_RHOS1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|126105306|gb|ABN77984.1| RNAse PH [Rhodobacter sphaeroides ATCC 17029]
          Length = 237

 Score =  266 bits (681), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 128/235 (54%), Positives = 174/235 (74%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR +S+   V K+AEGSCL++ G+TH+L +A++E+K P +++NT  GW+T
Sbjct: 1   MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ VD SALG RQI+IDCDV+Q
Sbjct: 61  AEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +        +S  +  HVAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKL--LKAGIIVSDPIVDHVAAVSCGIYAGQPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDST   D NFV+T    ++EVQ SAE A+FS+D    +L+LA+  IA+L+  QK
Sbjct: 179 EDSTAGTDGNFVLTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQK 233


>gi|77464799|ref|YP_354303.1| RNAse PH [Rhodobacter sphaeroides 2.4.1]
 gi|77389217|gb|ABA80402.1| RNAse PH [Rhodobacter sphaeroides 2.4.1]
          Length = 241

 Score =  266 bits (681), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 128/235 (54%), Positives = 174/235 (74%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR +S+   V K+AEGSCL++ G+TH+L +A++E+K P +++NT  GW+T
Sbjct: 5   MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVT 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ VD SALG RQI+IDCDV+Q
Sbjct: 65  AEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +        +S  +  HVAA+SCG+  G P++DLDY 
Sbjct: 125 ADGGTRCASITGGWVALRLAVNKL--LKAGIIVSDPIVDHVAAVSCGIYAGQPVLDLDYA 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDST   D NFV+T    ++EVQ SAE A+FS+D    +L+LA+  IA+L+  QK
Sbjct: 183 EDSTAGTDGNFVLTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQK 237


>gi|78065577|ref|YP_368346.1| ribonuclease PH [Burkholderia sp. 383]
 gi|123569063|sp|Q39IL4|RNPH_BURS3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|77966322|gb|ABB07702.1| RNAse PH [Burkholderia sp. 383]
          Length = 243

 Score =  266 bits (680), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 134/237 (56%), Positives = 175/237 (73%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ + +R+++LTR  +K+AEGS LV+FGDT +L TA++ E+VP ++R+   GW+TA
Sbjct: 7   RPSGRRADALRKVALTRHYTKHAEGSVLVEFGDTKVLCTASVSERVPDFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   + K   S +   HVAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLI-AAGKITRSPITD-HVAAISVGVYEGAPVLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VMT +G  VEVQG+AE   FS+    A+L+LA+  IA+L++LQKDV+
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQGGIAELVQLQKDVL 241


>gi|311693191|gb|ADP96064.1| ribonuclease PH [marine bacterium HP15]
          Length = 238

 Score =  266 bits (679), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 132/235 (56%), Positives = 167/235 (71%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q R++ +TR  +++AEGS LV+FGDT ++ TA++E KVP ++R    GWIT
Sbjct: 1   MRPSGRTPEQPRDVRITRNYTRHAEGSVLVEFGDTKVICTASVENKVPPFLRGEGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R+ REA  G+QGGR+ EIQR+IGR+LR+ VDL+ALG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLTALGEHSITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG  VAL D L H+   ++K      LK  VAA+S G+  G P+VDLDY 
Sbjct: 121 ADGGTRTAAITGGCVALVDALNHL--VADKRLKKSPLKQMVAALSVGVYKGTPVVDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  + D N +MTD G  +E+QG+AE A F Q    +ML LAK  I  L ++QK
Sbjct: 179 EDSEAETDMNVIMTDQGGFIEIQGTAEGAPFDQSELDSMLTLAKQGIEQLFEIQK 233


>gi|167586475|ref|ZP_02378863.1| ribonuclease PH [Burkholderia ubonensis Bu]
          Length = 246

 Score =  266 bits (679), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 132/237 (55%), Positives = 174/237 (73%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ +++R+++LTR  +K+AEGS LV+FGDT ++ TA++ E+VP ++R+   GW+TA
Sbjct: 7   RPSGRRADELRKVTLTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   + K   S +   HVAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLI-AAGKLARSPITD-HVAAISVGVFDGTPVLDLDYPE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VMT +G  VEVQG+AE   FS+D   A+L+LA+  I  L++LQKD +
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRDEMNALLDLAQSGIGQLVRLQKDAL 241


>gi|206561359|ref|YP_002232124.1| ribonuclease PH [Burkholderia cenocepacia J2315]
 gi|226736893|sp|B4EBP8|RNPH_BURCJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|198037401|emb|CAR53336.1| ribonuclease PH [Burkholderia cenocepacia J2315]
          Length = 246

 Score =  266 bits (679), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 133/237 (56%), Positives = 175/237 (73%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ +++R+++LTR  +K+AEGS LV+FGDT +L TA++ E+VP ++R    GW+TA
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVLCTASVAERVPEFLRERGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R + IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTLHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   + K   S +   HVAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSTL-IAAGKLTRSPITD-HVAAISVGVYEGAPVLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VMT +G  VEVQG+AE   FS+    A+L+LA+  IA+L++LQKDV+
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQGGIAELVQLQKDVL 241


>gi|325524722|gb|EGD02709.1| ribonuclease PH [Burkholderia sp. TJI49]
          Length = 246

 Score =  266 bits (679), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 132/237 (55%), Positives = 175/237 (73%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ + +R+++LTR  +K+AEGS LV+FGDT ++ TA++ E+VP ++R    GW+TA
Sbjct: 7   RPSGRRADALRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   + K + S ++  HVAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKL-IAAGKLERSPIVD-HVAAISVGVYEGTPVLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VMT +G  VEVQG+AE   FS+    A+L+LA+  I +L++LQKDV+
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQSGIGELVQLQKDVL 241


>gi|332559695|ref|ZP_08414017.1| ribonuclease PH [Rhodobacter sphaeroides WS8N]
 gi|332277407|gb|EGJ22722.1| ribonuclease PH [Rhodobacter sphaeroides WS8N]
          Length = 237

 Score =  266 bits (679), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 128/235 (54%), Positives = 173/235 (73%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR +S+   V K+AEGSCL++ G+TH+L +A++E+K P +++NT  GW+T
Sbjct: 1   MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ VD SALG RQI+IDCDV+Q
Sbjct: 61  AEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +        +S  +  HVAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKL--LKAGIIVSDPIVDHVAAVSCGIYAGQPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDST   D NFV T    ++EVQ SAE A+FS+D    +L+LA+  IA+L+  QK
Sbjct: 179 EDSTAGTDGNFVFTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQK 233


>gi|170698512|ref|ZP_02889583.1| ribonuclease PH [Burkholderia ambifaria IOP40-10]
 gi|170136596|gb|EDT04853.1| ribonuclease PH [Burkholderia ambifaria IOP40-10]
          Length = 246

 Score =  266 bits (679), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 133/237 (56%), Positives = 175/237 (73%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ +++R+++LTR  +K+AEGS LV+FGDT ++ TA++ E+VP ++R+   GW+TA
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   + K   S +   HVAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKL-IAAGKLARSPITD-HVAAISVGVYEGVPLLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VMT +G  VEVQG+AE A FS+    A+L+LA+  I  L++LQKDV+
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGAPFSRAEMNALLDLAQSGIGQLVQLQKDVL 241


>gi|34499302|ref|NP_903517.1| tRNA nucleotidyltransferase [Chromobacterium violaceum ATCC 12472]
 gi|61215999|sp|Q7MBD4|RNPH_CHRVO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|34105153|gb|AAQ61509.1| tRNA nucleotidyltransferase [Chromobacterium violaceum ATCC 12472]
          Length = 238

 Score =  265 bits (678), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 130/239 (54%), Positives = 177/239 (74%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  + MR + LTR  +K+AEGS LV+FGDT ++ TA++EE VP +++    GW+T
Sbjct: 1   MRPSQRSADAMRVVRLTRSYTKHAEGSVLVEFGDTKVICTASVEETVPSFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R++RE+ +G+Q GR+QEIQR+IGR+LR+V DL+ LG RQI+IDCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMRRESAAGKQSGRTQEIQRLIGRSLRAVTDLAKLGERQIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D ++ + D + K   +  L+  VAA+S G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAYVALADAIRGLID-AGKLSATP-LRDQVAAVSVGVYKGQPVLDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT SG  VEVQG+AE   FS++   AML LA+  IA+L+  Q+  ++
Sbjct: 179 EDSDCETDMNVVMTGSGRFVEVQGTAEGEPFSEEEMAAMLGLARKGIAELLAHQRQALN 237


>gi|120553485|ref|YP_957836.1| ribonuclease PH [Marinobacter aquaeolei VT8]
 gi|166228289|sp|A1TY30|RNPH_MARAV RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|120323334|gb|ABM17649.1| RNAse PH [Marinobacter aquaeolei VT8]
          Length = 238

 Score =  265 bits (678), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 133/239 (55%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q R++ +TR  +++AEGS LV+FGDT ++ TA++E KVP ++R    GWIT
Sbjct: 1   MRPSGRTPEQPRDVRITRNYTRHAEGSVLVEFGDTKVICTASVENKVPPFLRGEGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R+ REA  G+QGGR+ EIQR+IGR+LR+ VDL ALG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLEALGEHTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG  VAL D L H+     K      LK  VAA+S G+  G P+ DLDY 
Sbjct: 121 ADGGTRTAAITGGCVALVDALNHL--VKEKRLKKSPLKQMVAAVSVGVYRGTPVADLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N +MTD G  +E+QG+AE A F Q    AML LA+  I  L +LQK+ +S
Sbjct: 179 EDSEAETDMNVIMTDQGGFIEIQGTAEGAPFEQAELDAMLALARKAIDQLFELQKEALS 237


>gi|89076053|ref|ZP_01162413.1| putative ribonuclease PH [Photobacterium sp. SKA34]
 gi|89048205|gb|EAR53787.1| putative ribonuclease PH [Photobacterium sp. SKA34]
          Length = 238

 Score =  265 bits (677), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 127/240 (52%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q+R I++TR+ + +AEGS LV+FG+T ++ TA++EE VP W++    GW+T
Sbjct: 1   MRPSGRSATQVRPITITRQYTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA SG+QGGR+ EIQR+I R+LR+ VDL  LG + I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLKILGEQMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D + +M    N       LK  VAA+S G+  G P  DL+Y 
Sbjct: 121 ADGGTRTASITGAMVALVDAINYM--LENGMIKKSPLKSMVAAVSVGIYKGEPTCDLEYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G ++E+QG+AE   FS +   AML LAKD I+D+I +QK  + N
Sbjct: 179 EDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGISDIISMQKKALEN 238


>gi|126738497|ref|ZP_01754202.1| ribonuclease PH [Roseobacter sp. SK209-2-6]
 gi|126720296|gb|EBA17002.1| ribonuclease PH [Roseobacter sp. SK209-2-6]
          Length = 237

 Score =  265 bits (676), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 130/235 (55%), Positives = 170/235 (72%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ N+MR +S+    +K+AEGSCL+K G+TH+L TATLEE+VP +I+ +  GW+T
Sbjct: 1   MRPSGRELNEMRPVSIETGFTKHAEGSCLIKMGETHVLCTATLEERVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA SG+QGGR+ EIQR+IGRALR+ VD  ALG RQI IDCDV+Q
Sbjct: 61  AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR AAITG WVAL   +  +    +       L   V+AISCG+  G P++DLDY 
Sbjct: 121 ADGGTRCAAITGGWVALRLAVNKLMKAGDV--TIDPLMDPVSAISCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS   VD NF+MT SG ++EVQ SAE + FS+D    +++LA+   ++L  LQK
Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEVQMSAEGSIFSRDQMNQLMDLAEKGTSELAALQK 233


>gi|260576117|ref|ZP_05844110.1| ribonuclease PH [Rhodobacter sp. SW2]
 gi|259021597|gb|EEW24900.1| ribonuclease PH [Rhodobacter sp. SW2]
          Length = 237

 Score =  264 bits (675), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 128/238 (53%), Positives = 171/238 (71%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+  +MR I +   V K+AEGSCL+K G+TH+L +AT+E+K P +++NT  GW+T
Sbjct: 1   MRPSGRKLGEMRPIVIETGVMKHAEGSCLIKMGETHVLCSATIEDKAPPFLKNTGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ VD SALG RQI+IDCDV+Q
Sbjct: 61  AEYGMLPRATNSRNRREAAAGKQTGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +        +S  +  HVAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAMNKL--LKAGVIVSDPMIDHVAAVSCGIYAGQPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS    D NF++T  G ++EVQ SAE ATFS+     +L+LA+   ADL+  QK  +
Sbjct: 179 EDSAAGTDGNFILTGRGRLIEVQMSAEGATFSRAEMGELLDLAEAGAADLVAAQKAAL 236


>gi|221640718|ref|YP_002526980.1| ribonuclease PH [Rhodobacter sphaeroides KD131]
 gi|254808599|sp|B9KPU4|RNPH_RHOSK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|221161499|gb|ACM02479.1| Ribonuclease PH [Rhodobacter sphaeroides KD131]
          Length = 237

 Score =  264 bits (674), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 127/235 (54%), Positives = 174/235 (74%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR +S+   V K+AEGSCL++ G+TH+L +A++E+K P +++NT  GW+T
Sbjct: 1   MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ VD SALG RQI+IDCDV+Q
Sbjct: 61  AEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +        +S  +  +VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKL--LKAGIIVSDPIVDNVAAVSCGIYAGQPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDST   D NFV+T    ++EVQ SAE A+FS+D    +L+LA+  IA+L+  QK
Sbjct: 179 EDSTAGTDGNFVLTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQK 233


>gi|161525573|ref|YP_001580585.1| ribonuclease PH [Burkholderia multivorans ATCC 17616]
 gi|189349699|ref|YP_001945327.1| ribonuclease PH [Burkholderia multivorans ATCC 17616]
 gi|226736894|sp|A9AEQ7|RNPH_BURM1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|160343002|gb|ABX16088.1| ribonuclease PH [Burkholderia multivorans ATCC 17616]
 gi|189333721|dbj|BAG42791.1| ribonuclease PH [Burkholderia multivorans ATCC 17616]
          Length = 246

 Score =  264 bits (674), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 131/237 (55%), Positives = 175/237 (73%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ +++R+++LTR  +K+AEGS LV+FGDT ++ TA++ E+VP ++R    GW+TA
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R I +DCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHLDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   + K + S ++  HVAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSTLL-AAGKLERSPIVD-HVAAISVGVYEGTPVLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VMT +G  VEVQG+AE   FS+    A+L+LA+  I  L++LQKDV+
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQSGIGTLVQLQKDVL 241


>gi|115350911|ref|YP_772750.1| ribonuclease PH [Burkholderia ambifaria AMMD]
 gi|122323780|sp|Q0BHF7|RNPH_BURCM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|115280899|gb|ABI86416.1| RNAse PH [Burkholderia ambifaria AMMD]
          Length = 246

 Score =  264 bits (674), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 132/237 (55%), Positives = 174/237 (73%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ +++R+++LTR  +K+AEGS LV+FGDT ++ TA++ E+VP ++R+   GW+TA
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   + K   S +   HVAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLI-AAGKLARSPITD-HVAAISVGVYEGVPLLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VMT +G  VEVQG+AE   FS+    A+L+LA+  I  L++LQKDV+
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQSGIGQLVQLQKDVL 241


>gi|171315534|ref|ZP_02904770.1| ribonuclease PH [Burkholderia ambifaria MEX-5]
 gi|172059924|ref|YP_001807576.1| ribonuclease PH [Burkholderia ambifaria MC40-6]
 gi|226736891|sp|B1YUN3|RNPH_BURA4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|171099371|gb|EDT44109.1| ribonuclease PH [Burkholderia ambifaria MEX-5]
 gi|171992441|gb|ACB63360.1| ribonuclease PH [Burkholderia ambifaria MC40-6]
          Length = 246

 Score =  264 bits (674), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 132/237 (55%), Positives = 174/237 (73%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ +++R+++LTR  +K+AEGS LV+FGDT ++ TA++ E+VP ++R+   GW+TA
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   + K   S +   HVAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKL-IAAGKLARSPITD-HVAAISVGVYEGVPLLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VMT +G  VEVQG+AE   FS+    A+L+LA+  I  L++LQKDV+
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQSGIGQLVQLQKDVL 241


>gi|221201201|ref|ZP_03574241.1| ribonuclease PH [Burkholderia multivorans CGD2M]
 gi|221206345|ref|ZP_03579358.1| ribonuclease PH [Burkholderia multivorans CGD2]
 gi|221213625|ref|ZP_03586599.1| ribonuclease PH [Burkholderia multivorans CGD1]
 gi|221166414|gb|EED98886.1| ribonuclease PH [Burkholderia multivorans CGD1]
 gi|221173654|gb|EEE06088.1| ribonuclease PH [Burkholderia multivorans CGD2]
 gi|221179051|gb|EEE11458.1| ribonuclease PH [Burkholderia multivorans CGD2M]
          Length = 246

 Score =  263 bits (673), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 131/237 (55%), Positives = 175/237 (73%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ +++R+++LTR  +K+AEGS LV+FGDT ++ TA++ E+VP ++R    GW+TA
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R I +DCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHLDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   + K + S ++  HVAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSTLL-AAGKLERSPIVD-HVAAISVGVYEGTPVLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VMT +G  VEVQG+AE   FS+    A+L+LA+  I  L++LQKDV+
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMDALLDLAQSGIGTLVQLQKDVL 241


>gi|59710718|ref|YP_203494.1| ribonuclease PH [Vibrio fischeri ES114]
 gi|75431903|sp|Q5E8P0|RNPH_VIBF1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|59478819|gb|AAW84606.1| ribonuclease PH [Vibrio fischeri ES114]
          Length = 238

 Score =  263 bits (673), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 130/239 (54%), Positives = 169/239 (70%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q+R I+LTR  + +AEGS LV+FG+T ++ TA++EE VP W++    GW+T
Sbjct: 1   MRPSGRTAQQVRPITLTRNFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA SG+QGGR+ EIQR+I R+LR+ VDL ALG + I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D + HM   + K + S  +KGHVAA+S G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASITGASVALADAINHM-IATGKLK-SNPMKGHVAAVSVGIYNGEAICDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VM + G ++EVQG+AE A FS      ML LA+  I D+I+ QK  ++
Sbjct: 179 EDSAADTDMNVVMMEDGKMIEVQGTAEEAPFSHQELLDMLALAQQGINDIIEKQKAALA 237


>gi|197333899|ref|YP_002154880.1| ribonuclease PH [Vibrio fischeri MJ11]
 gi|226736949|sp|B5FFE2|RNPH_VIBFM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|197315389|gb|ACH64836.1| ribonuclease PH [Vibrio fischeri MJ11]
          Length = 238

 Score =  263 bits (673), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 130/239 (54%), Positives = 169/239 (70%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q+R I+LTR  + +AEGS LV+FG+T ++ TA++EE VP W++    GW+T
Sbjct: 1   MRPSGRTAQQVRPITLTRNFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA SG+QGGR+ EIQR+I R+LR+ VDL ALG + I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D + HM   + K + S  +KGHVAA+S G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASITGASVALADAINHM-IATGKLK-SNPMKGHVAAVSVGIYNGEAICDLEYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VM + G ++EVQG+AE A FS      ML LA+  I D+I+ QK  ++
Sbjct: 179 EDSAADTDMNVVMMEDGKMIEVQGTAEEAPFSHQELLDMLALAQQGINDIIEKQKAALA 237


>gi|90023323|ref|YP_529150.1| ribonuclease PH [Saccharophagus degradans 2-40]
 gi|123395477|sp|Q21EE1|RNPH_SACD2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|89952923|gb|ABD82938.1| RNAse PH [Saccharophagus degradans 2-40]
          Length = 239

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 124/239 (51%), Positives = 175/239 (73%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR   Q+R++++TR+ +++AEGS LV FGDT ++ TA++E  VP +++    GWITA
Sbjct: 3   RPSGRAPEQLRDVTITRQFTRHAEGSVLVCFGDTKVICTASVEAGVPRFLKGQGQGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG+R+ REA  G+QGGR+ EIQR+IGR+LR+ VDL+ALG   I+IDCDVIQA
Sbjct: 63  EYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLTALGEHSIVIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D +++++    K   +  L   VAA+S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGALVALVDAIRYLQ--REKMITTDPLVHMVAAVSVGIYEGVPVLDLDYPE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT+ G ++E+QG+AE+  F+ + F  M +LAK  +A+L+ LQK  ++ 
Sbjct: 181 DSNAETDMNMVMTEEGGLIEIQGTAEKKPFTDEQFAGMFSLAKKGVAELVALQKAALAQ 239


>gi|91774399|ref|YP_544155.1| ribonuclease PH [Methylobacillus flagellatus KT]
 gi|122399230|sp|Q1GXA4|RNPH_METFK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|91708386|gb|ABE48314.1| RNAse PH [Methylobacillus flagellatus KT]
          Length = 238

 Score =  262 bits (670), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 132/238 (55%), Positives = 168/238 (70%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +Q+RE+ + R  +K+AEGS LVKFGDTH+L TA++E+KVP ++R    GW T
Sbjct: 1   MRPSNRAPDQLREVEIIRHYTKHAEGSVLVKFGDTHVLCTASVEDKVPPFLRGRNQGWTT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R+ REA  G+Q GR+QEIQR+IGR+LR+V+DL  LG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMDREAARGKQSGRTQEIQRLIGRSLRAVIDLGKLGERTIHLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VALHD +  M   +N       L+  VAAIS G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAYVALHDAVGFM--LANDMIQESPLRDAVAAISVGVYQGTPVLDLDYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  D D N VMT SG  VE+QG+AE   F +     ML LA+  I  L+  QK+ +
Sbjct: 179 EDSACDTDMNVVMTGSGGFVEIQGTAEGEPFQRAAMNRMLELAESGIRTLLLKQKEAL 236


>gi|84501187|ref|ZP_00999392.1| ribonuclease PH [Oceanicola batsensis HTCC2597]
 gi|84390478|gb|EAQ02966.1| ribonuclease PH [Oceanicola batsensis HTCC2597]
          Length = 237

 Score =  262 bits (669), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 128/235 (54%), Positives = 175/235 (74%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  ++MR +S+   V+K+AEGSCL+K GDTH++ TAT+E++VP +I+ +  GW+T
Sbjct: 1   MRPSGRDLSEMRAVSIETGVTKHAEGSCLIKVGDTHVICTATIEDRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA +G+QGGR+ EIQR+IGR+LR+ VD  ALG RQI IDCDVIQ
Sbjct: 61  AEYGMLPRSTTSRMRREASAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQISIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +    +   ++  L   VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDV--VTDPLVDPVAAVSCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS   VD NFVMT SG ++EVQ SAE AT+S+D    +++LA+  +++L + QK
Sbjct: 179 EDSEAGVDGNFVMTGSGRLIEVQMSAEGATYSRDQMNQLVDLAEKGVSELAEKQK 233


>gi|54307419|ref|YP_128439.1| putative ribonuclease PH [Photobacterium profundum SS9]
 gi|90412679|ref|ZP_01220680.1| putative ribonuclease PH [Photobacterium profundum 3TCK]
 gi|61215939|sp|Q6LVN8|RNPH_PHOPR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|46911839|emb|CAG18637.1| putative ribonuclease PH [Photobacterium profundum SS9]
 gi|90326254|gb|EAS42673.1| putative ribonuclease PH [Photobacterium profundum 3TCK]
          Length = 238

 Score =  262 bits (669), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 129/241 (53%), Positives = 172/241 (71%), Gaps = 4/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R I++TR  + +AEGS LV+FGDT ++ TA++EE VP W++    GW+T
Sbjct: 1   MRPSGRSTSQVRPITITRNFTAHAEGSVLVEFGDTKVICTASVEENVPRWLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA SG+QGGR+ EIQR+I R+LR+ VDL ALG + I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNRREASSGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA VAL D +  M +   K  L +  +KG VAA+S G+  G  I DL+Y
Sbjct: 121 ADGGTRTASITGAMVALVDAVNSMIE---KGTLKKSPIKGMVAAVSVGIYKGEAICDLEY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  + D N VMT+ G ++E+QG+AE   FS +   AML LAKD IAD++ +QK  + 
Sbjct: 178 LEDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGIADIVTMQKQALE 237

Query: 240 N 240
           +
Sbjct: 238 S 238


>gi|157826032|ref|YP_001493752.1| ribonuclease PH [Rickettsia akari str. Hartford]
 gi|166228310|sp|A8GPB9|RNPH_RICAH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157799990|gb|ABV75244.1| ribonuclease PH [Rickettsia akari str. Hartford]
          Length = 239

 Score =  262 bits (669), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 127/238 (53%), Positives = 168/238 (70%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ NQ+R ISL        EGSC++K G+TH++ +AT E  VP ++R    GW+T
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINTEGSCIIKIGNTHVMCSATCETTVPPFLRGQNQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST  R+KREA  G+QGGR+QEIQR+IGR++R V+DL  LG RQIIIDCDVI 
Sbjct: 61  AEYGMLPGSTSQRIKREAAQGKQGGRTQEIQRLIGRSMRCVMDLKKLGERQIIIDCDVIN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG++VALH  ++ +     +      L   +AA+SCG+  G  I+DLDY 
Sbjct: 121 ADGGTRTASITGSYVALHLAIRSL--MKKRILKVNPLISQIAAVSCGIYKGEAILDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  +VD+NFV   +G+++EVQG+AE+  FS++ F  ML LAK   A+L KLQ  V+
Sbjct: 179 EDSDAEVDSNFVFAGNGNLIEVQGTAEQEPFSEEQFIEMLKLAKCGAAELFKLQNQVL 236


>gi|254252975|ref|ZP_04946293.1| RNase PH [Burkholderia dolosa AUO158]
 gi|124895584|gb|EAY69464.1| RNase PH [Burkholderia dolosa AUO158]
          Length = 246

 Score =  262 bits (669), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 132/237 (55%), Positives = 174/237 (73%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ +++R+++LTR  +K+AEGS LV+FGDT ++ TA++ E+VP ++R+   GW+TA
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPDFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDV QA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVTQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   + K   S +   HVAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSTLI-AAGKLVRSPITD-HVAAISVGVYEGVPVLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VMT +G  VEVQG+AE A FS+    A+L+LA+  I  L++LQKDV+
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGAPFSRAEMNALLDLAQSGIGRLVQLQKDVL 241


>gi|260429579|ref|ZP_05783556.1| ribonuclease PH [Citreicella sp. SE45]
 gi|260420202|gb|EEX13455.1| ribonuclease PH [Citreicella sp. SE45]
          Length = 296

 Score =  262 bits (669), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 127/239 (53%), Positives = 173/239 (72%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  ++MR +S+   ++K+AEGSCL+K GDT ++ TA+LEE+VP +I+ +  GW+T
Sbjct: 60  MRPSGRHLSEMRTVSIETGITKHAEGSCLIKVGDTQVICTASLEERVPPFIKGSGLGWVT 119

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R++REA SG+QGGR+ EIQR+IGR+LR+ VD  ALG RQI IDCDVIQ
Sbjct: 120 AEYGMLPRSTGSRMRREATSGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITIDCDVIQ 179

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +    +    +  L   VAA+SCG+  G PI+DLDY 
Sbjct: 180 ADGGTRCASITGGWVALRLAVNKLMKAGDVK--TDPLVSPVAAVSCGIYAGQPILDLDYP 237

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD NF++   G ++EVQ SAE ATFS+     +++LA+  +A L++ QK  ++
Sbjct: 238 EDSEAGVDGNFILRGDGQLIEVQMSAEGATFSRAQMSELMDLAEKGVAQLVEAQKAAVA 296


>gi|134295025|ref|YP_001118760.1| ribonuclease PH [Burkholderia vietnamiensis G4]
 gi|166228274|sp|A4JCC2|RNPH_BURVG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|134138182|gb|ABO53925.1| RNAse PH [Burkholderia vietnamiensis G4]
          Length = 246

 Score =  262 bits (669), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 132/237 (55%), Positives = 173/237 (72%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ +++R+++LTR  +K+AEGS LV+FGDT ++ TA++ E+VP ++R    GW+TA
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVVERVPEFLRERGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTINIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   + K   S +   HVAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKL-IAAGKLARSPITD-HVAAISVGVYEGAPVLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VMT +G  VEVQG+AE   FS+    A+L+LA+  I  L++LQKDV+
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQAGIGRLVQLQKDVL 241


>gi|89067431|ref|ZP_01154944.1| ribonuclease PH [Oceanicola granulosus HTCC2516]
 gi|89047000|gb|EAR53054.1| ribonuclease PH [Oceanicola granulosus HTCC2516]
          Length = 236

 Score =  262 bits (669), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 128/234 (54%), Positives = 171/234 (73%), Gaps = 3/234 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   QMR +++   V+K+AEGSCL+K GDTH+L TA++E++ P ++RNT  GW+T
Sbjct: 1   MRPSGRDLGQMRPVTIETGVTKHAEGSCLIKMGDTHVLCTASIEDRPPPFLRNTGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R++REA +G+QGGR+ EIQR+IGR+LR+ V+ +ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRSTGSRMRREATAGKQGGRTVEIQRLIGRSLRAGVERAALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +    +    S  L   V+A+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMQAGDV--TSDPLGDPVSAVSCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           EDS   VD NFVMT  G ++EVQ SAE ATFS+D    +L LA+  + +L  LQ
Sbjct: 179 EDSVAGVDGNFVMT-GGRMIEVQMSAEGATFSRDELEQLLGLAERGVGELAALQ 231


>gi|85706900|ref|ZP_01037990.1| ribonuclease PH [Roseovarius sp. 217]
 gi|85668511|gb|EAQ23382.1| ribonuclease PH [Roseovarius sp. 217]
          Length = 238

 Score =  262 bits (669), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 127/236 (53%), Positives = 173/236 (73%), Gaps = 2/236 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  ++MR +S+   V K+AEGSCL+K GDTH+L TAT+EE+VP +++ +  GW+T
Sbjct: 1   MRPSGRNLSEMRPVSIETGVLKHAEGSCLIKIGDTHVLCTATIEERVPPFVKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA +G+QGGR+ EIQR+IGR+LR+ VD  ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRSTNSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +Q +    +   +S  L   VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALKLAVQKLMKAGDV--ISDPLIDPVAAVSCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           EDS   VD NF+MT S  ++EVQ SAE +T+S+D    +L+LA+  +  L+  Q++
Sbjct: 179 EDSEAGVDGNFIMTGSKRLIEVQMSAEGSTYSRDQMNTLLDLAEQGVDLLVAKQRE 234


>gi|254448548|ref|ZP_05062008.1| ribonuclease PH [gamma proteobacterium HTCC5015]
 gi|198261931|gb|EDY86216.1| ribonuclease PH [gamma proteobacterium HTCC5015]
          Length = 240

 Score =  261 bits (668), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 127/240 (52%), Positives = 177/240 (73%), Gaps = 4/240 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGRQ +Q+R++ LTR+ + +AEGS LV+FG+T ++ TA++EE+VP +++    GW+TA
Sbjct: 4   RPSGRQADQLRDVRLTRQYTCHAEGSVLVEFGNTKVICTASVEERVPPFLKGQGQGWVTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG+R+ REA  G+Q GR+QEIQR+IGR+LR+ +DL ALG RQI +DCDVIQA
Sbjct: 64  EYGMLPRSTGSRMGREAARGKQSGRTQEIQRLIGRSLRAAIDLEALGERQITLDCDVIQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTA+ITGA+VAL D +  +    N  +LS+  L G VA+IS G+  G P++DLDY 
Sbjct: 124 DGGTRTASITGAFVALTDAVNQL---INDGKLSKSPLLGQVASISVGIYEGTPVLDLDYP 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM D+GH +EVQG+AE   F ++    +L+LA   I +L ++QK  ++ 
Sbjct: 181 EDSNAETDMNVVMNDAGHFIEVQGTAEGHAFRREELNQLLDLADKGIRELFEVQKAALAK 240


>gi|294679008|ref|YP_003579623.1| ribonuclease PH [Rhodobacter capsulatus SB 1003]
 gi|294477828|gb|ADE87216.1| ribonuclease PH [Rhodobacter capsulatus SB 1003]
          Length = 237

 Score =  261 bits (668), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 127/239 (53%), Positives = 172/239 (71%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR    +R IS+   V+K+AEGS L+K GDTH+L TAT+E+K P +++ +  GW+T
Sbjct: 1   MRPSGRNLADIRSISIETGVTKHAEGSVLIKMGDTHVLCTATIEDKAPSFLKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ +D SALG RQI++DCDV+Q
Sbjct: 61  AEYGMLPRATNSRNRREAAAGKQSGRTQEIQRLIGRALRAGIDRSALGERQIVVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +    +   +S  +  HVAAISCG+  G PI DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKL--LKSGLIVSDPIIDHVAAISCGIYAGQPIADLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD NF++T  G +VEVQ +AE +TFS++    +L+LA+  +A L+  QK  I+
Sbjct: 179 EDSEAGVDGNFILTGRGRLVEVQMTAEGSTFSREEMTKLLDLAEAGVAQLVAAQKAAIA 237


>gi|253995547|ref|YP_003047611.1| ribonuclease PH [Methylotenera mobilis JLW8]
 gi|253982226|gb|ACT47084.1| ribonuclease PH [Methylotenera mobilis JLW8]
          Length = 241

 Score =  261 bits (668), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 133/231 (57%), Positives = 168/231 (72%), Gaps = 2/231 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R S R  NQ+RE+ + R  +K+AEGS LVKFGDTH+L TA+++EKVP +++    GW+T
Sbjct: 5   IRPSQRACNQLREVEIIRHYTKHAEGSVLVKFGDTHVLCTASVDEKVPGFLKGKGQGWVT 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R+ REA  G+Q GR+QEIQR+IGR+LR+++DL  LG R I IDCDVIQ
Sbjct: 65  AEYGMLPRSTGSRMDREAARGKQSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDCDVIQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VALHD +  +   S K   S  LK  VAAIS G+  G P++DLDY 
Sbjct: 125 ADGGTRTASITGAYVALHDAISFLLK-SGKISESP-LKDSVAAISVGVYQGTPVLDLDYI 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           EDS  D D N VMT  G  VE+QG+AE   F++D   AML+LA   I  LI
Sbjct: 183 EDSDCDTDMNVVMTGKGGFVEIQGTAEGEPFARDAMNAMLDLAAHGIQQLI 233


>gi|197106932|ref|YP_002132309.1| ribonuclease PH [Phenylobacterium zucineum HLK1]
 gi|226736923|sp|B4RC87|RNPH_PHEZH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|196480352|gb|ACG79880.1| ribonuclease PH [Phenylobacterium zucineum HLK1]
          Length = 238

 Score =  261 bits (668), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 126/235 (53%), Positives = 167/235 (71%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R+ + +R ++L   V++YAEGSCL  FG T +L TA+LEE VP ++R    GW+T
Sbjct: 1   MRPSDRRPDLLRPVTLETGVNRYAEGSCLASFGHTKVLVTASLEEGVPPFLRGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA  G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATHTRGRREAAQGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITVDCDVVQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVAL    +++         +  +   VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGAWVALRLATRYL--LEEGVIATDPILDQVAAISCGVFSGTPVLDLDYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  + DANFV+T +G IVE+Q + E+  FS+  F A+  LA+  I +L +LQ+
Sbjct: 179 EDSNAEADANFVLTGAGDIVEIQATGEKRGFSEAEFEALFALARKGIGELCELQR 233


>gi|254295455|ref|YP_003061478.1| ribonuclease PH [Hirschia baltica ATCC 49814]
 gi|254043986|gb|ACT60781.1| ribonuclease PH [Hirschia baltica ATCC 49814]
          Length = 243

 Score =  261 bits (668), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 131/239 (54%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R S R    +RE+SL    S+YAEGSCLVKFG TH+L TA+    VP W++ T  GW+TA
Sbjct: 6   RPSKRAPESLREVSLEVGKSRYAEGSCLVKFGHTHVLCTASWTGDVPRWMKGTGKGWVTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R +REA +G+Q GR+QEIQR+IGRALRSV DL ALG  QI IDCDVIQA
Sbjct: 66  EYGMLPRATHTRGRREAAAGKQSGRTQEIQRLIGRALRSVTDLEALGENQITIDCDVIQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITG +VAL   + ++++       +  L    AAISCG+    P++DLDY E
Sbjct: 126 DGGTRTAAITGGYVALALAINYLKE--EGIISTNPLVSQAAAISCGVYQDVPVLDLDYAE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS   VDANF+M+  G I+EVQG+ E   FS++ F AM +LA     +L  LQK  I N
Sbjct: 184 DSNAMVDANFIMSSDGRIIEVQGTGEERPFSREEFLAMSDLADAGCKELFALQKAAIDN 242


>gi|149376205|ref|ZP_01893970.1| tRNA nucleotidyltransferase [Marinobacter algicola DG893]
 gi|149359610|gb|EDM48069.1| tRNA nucleotidyltransferase [Marinobacter algicola DG893]
          Length = 238

 Score =  261 bits (668), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 132/240 (55%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q R+I +TR  +++AEGS LV+FGDT ++ TA++E KVP ++R    GWIT
Sbjct: 1   MRPSGRTPEQPRDIRITRHYTRHAEGSVLVEFGDTKVICTASVENKVPPFLRGEGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R+ REA  G+QGGR+ EIQR+IGR+LR+ VDLSALG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLSALGEHSITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG  VAL D L H+     + + S  LK  +AA S G+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGGCVALVDALNHLVK-EGRLKTSP-LKQMIAAFSVGVYKGTPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N +MTD G  +E+QG+AE A F Q+    ML LAK  I  L + QK  ++ 
Sbjct: 179 EDSEAETDMNVIMTDQGGFIEIQGTAEGAPFEQEELDGMLKLAKLGIGQLFEAQKAALAQ 238


>gi|254418052|ref|ZP_05031776.1| ribonuclease PH [Brevundimonas sp. BAL3]
 gi|196184229|gb|EDX79205.1| ribonuclease PH [Brevundimonas sp. BAL3]
          Length = 241

 Score =  261 bits (667), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 124/235 (52%), Positives = 170/235 (72%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R ++Q+R +++   V++YAEGSCL+ FG T +L TA++EE +P W+R    GW+T
Sbjct: 1   MRHSQRTDDQLRPVTIETGVNRYAEGSCLITFGHTKVLVTASVEETIPGWMRGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQ+++DCDVIQ
Sbjct: 61  AEYGMLPRATHTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQVVLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVA+   L ++ D       S  +   VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVAMASALNYLRD--EGVLKSDPILDQVAAVSCGVCDGVPVLDLDYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  + D+NFV+T +G IVEVQ + E+  FS+  F  + +LA+    +L  LQK
Sbjct: 179 EDSEAEADSNFVLTGAGQIVEVQATGEKRGFSRAEFDRLFSLAEIGCTELFALQK 233


>gi|126666552|ref|ZP_01737530.1| tRNA nucleotidyltransferase [Marinobacter sp. ELB17]
 gi|126628940|gb|EAZ99559.1| tRNA nucleotidyltransferase [Marinobacter sp. ELB17]
          Length = 238

 Score =  261 bits (667), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 131/239 (54%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q R+I +TR  +++AEGS L++FGDT ++ TA++E KVP ++R    GWIT
Sbjct: 1   MRPSGRTPEQPRDIRITRNYTRHAEGSVLIEFGDTKVICTASVENKVPPFLRGEGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+IGR+LR+ VDL ALG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTNSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLKALGEHTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG  VAL D L  +   + K      LK  VAA+S G+  G P+VDLDY 
Sbjct: 121 ADGGTRTAAITGGCVALVDALNFL--VAQKRLKKSPLKQMVAAVSVGVFKGKPVVDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMTD G  +E+QG+AE A F+Q+   +ML LAK  I  L  LQ + ++
Sbjct: 179 EDSVAETDMNVVMTDKGGFIEIQGTAEGAPFAQEELDSMLVLAKQGIETLFALQNEALN 237


>gi|254460324|ref|ZP_05073740.1| ribonuclease PH [Rhodobacterales bacterium HTCC2083]
 gi|206676913|gb|EDZ41400.1| ribonuclease PH [Rhodobacteraceae bacterium HTCC2083]
          Length = 237

 Score =  261 bits (667), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 126/234 (53%), Positives = 170/234 (72%), Gaps = 2/234 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  NQMR++S+   V+K+AEGSC++K GDTH+L TATLE +VP +I+ +  GW+T
Sbjct: 1   MRPSGRDLNQMRDVSIETNVTKHAEGSCMIKMGDTHVLCTATLENRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA +G+QGGR+ EIQR+IGR+LR+ VD  ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRSTTSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +         S  L   VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALKLAVNKLIKAGEI--TSDPLISPVAAISCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           EDS   VD NF+M  +G ++E Q SAE +T+S+D    +++LA+  +++L  +Q
Sbjct: 179 EDSEAGVDGNFIMLANGQMIETQMSAEGSTYSRDQMNQLIDLAEKGVSELAAMQ 232


>gi|83942034|ref|ZP_00954496.1| ribonuclease PH [Sulfitobacter sp. EE-36]
 gi|83953083|ref|ZP_00961805.1| ribonuclease PH [Sulfitobacter sp. NAS-14.1]
 gi|83842051|gb|EAP81219.1| ribonuclease PH [Sulfitobacter sp. NAS-14.1]
 gi|83847854|gb|EAP85729.1| ribonuclease PH [Sulfitobacter sp. EE-36]
          Length = 237

 Score =  261 bits (667), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 125/235 (53%), Positives = 174/235 (74%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +++R +S+    +K+AEGS L+K GDTH+L TAT+E++VP +I+ +  GW+T
Sbjct: 1   MRPSGRKLDELRAVSIETGFTKHAEGSALIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA  G+QGGR+ EIQR+IGRALR+ VD SALG RQI IDCDV+Q
Sbjct: 61  AEYGMLPRATNTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRSALGERQITIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +    +   +S  L   VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALKLAVNKLMKAGD--VVSDPLVDPVAAISCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS   VD NF+MT +G ++E+Q SAE +T+S+D    +++LA+  +A+L++ QK
Sbjct: 179 EDSEAGVDGNFIMTGTGKLIEIQMSAEGSTYSRDQMNQLMDLAEKGVAELVEKQK 233


>gi|289209634|ref|YP_003461700.1| ribonuclease PH [Thioalkalivibrio sp. K90mix]
 gi|288945265|gb|ADC72964.1| ribonuclease PH [Thioalkalivibrio sp. K90mix]
          Length = 242

 Score =  261 bits (667), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 123/240 (51%), Positives = 170/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ ++MR +  TR  +++AEGS LV+FGDT +L  AT+E +VP W++N   GW+T
Sbjct: 1   MRPSGRQADEMRPVRFTRHFTRHAEGSVLVEFGDTRVLCNATIESRVPPWLKNKGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST +R+ REA  G+ GGR+ EIQR+IGR+LR+VVDL ALG RQII+DCDVIQ
Sbjct: 61  AEYSMLPRSTHDRMAREAARGKLGGRTMEIQRLIGRSLRAVVDLEALGERQIIVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA+VAL D ++   +          L GH+AAIS G+  G P++DLDY 
Sbjct: 121 ADGGTRTASISGAYVALRDAIRKARE--QGMIRKDPLHGHLAAISVGIFNGAPVLDLDYD 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM ++G ++E+QG+AE   F +D    ML+L +  I  +++ Q+  ++ 
Sbjct: 179 EDSQAETDLNLVMNEAGGVIEIQGTAEGHAFRRDELNQMLDLGEKGIQQIVEAQRAALAK 238


>gi|300311449|ref|YP_003775541.1| tRNA nucleotidyltransferase [Herbaspirillum seropedicae SmR1]
 gi|124483528|emb|CAM32637.1| tRNA nucleotidyltransferase (ribonuclease PH) protein
           [Herbaspirillum seropedicae]
 gi|300074234|gb|ADJ63633.1| tRNA nucleotidyltransferase (ribonuclease PH) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score =  261 bits (667), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 131/237 (55%), Positives = 168/237 (70%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR   Q+RE+ LTR+ +K+AEGS LV+FGDT +L TA++EEKVP +++    GW+TA
Sbjct: 6   RPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R+ REA  G+Q GR+QEIQR+IGRALR+  DL A G R + +DCDV+QA
Sbjct: 66  EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA VA +D    ++  S     +  +K  VAAIS G+  G P++DLDY E
Sbjct: 126 DGGTRTAAITGAMVAAYDAFAGLK--SQGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VMTD+GH VEVQG+AE A F +    A+L+LA+  IA L  LQ+  +
Sbjct: 184 DSDCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQAL 240


>gi|114321593|ref|YP_743276.1| ribonuclease PH [Alkalilimnicola ehrlichii MLHE-1]
 gi|122310932|sp|Q0A5V1|RNPH_ALHEH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|114227987|gb|ABI57786.1| RNAse PH [Alkalilimnicola ehrlichii MLHE-1]
          Length = 238

 Score =  261 bits (666), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 126/238 (52%), Positives = 171/238 (71%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +++R + LTR  +++AEGS LV+FGDT +L TA++EE+VP W+RN   GW+T
Sbjct: 1   MRPSGRKPDELRPVRLTRHYTRHAEGSVLVEFGDTRVLCTASVEERVPPWLRNQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG R  REA  G+Q GR+ EIQR+IGRALR+ VDL ALG R++++DCDV+Q
Sbjct: 61  AEYGMLPRSTGTRNDREAARGKQQGRTIEIQRLIGRALRAAVDLEALGERRVVLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D    +     + + S +  G VAA+S G+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGAYVALVDACNLLRK-EGRIRRSPIF-GQVAAVSVGIYQGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VM ++G  +E+QG+AE   F +D   AM  LA+  +A LI+ Q+  +
Sbjct: 179 EDSEAETDMNVVMNEAGGFIELQGTAEGHAFRRDELNAMTELAELGVAQLIETQRQAL 236


>gi|110677820|ref|YP_680827.1| ribonuclease PH [Roseobacter denitrificans OCh 114]
 gi|123362332|sp|Q16D02|RNPH_ROSDO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|109453936|gb|ABG30141.1| ribonuclease PH [Roseobacter denitrificans OCh 114]
          Length = 237

 Score =  261 bits (666), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 125/235 (53%), Positives = 171/235 (72%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ N+MR +S+    +K+AEGS L+K GDTH+L TAT+E++VP +I+ +  GW+T
Sbjct: 1   MRPSGRELNEMRPVSIETGFTKHAEGSALIKIGDTHVLCTATIEDRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++RE+ +G+QGGR+ EIQR+IGR+LR+ VD  ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATNTRMRRESTAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +    +   +S  L   VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDV--ISDPLVDPVAAISCGIYAGQPVMDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS   VD NF+MT S  ++EVQ SAE ATFS+D    +++LA+  + +L+  QK
Sbjct: 179 EDSEAGVDGNFIMTGSKQLIEVQMSAEGATFSRDQMNQLMDLAEKGVGELVAAQK 233


>gi|56476728|ref|YP_158317.1| ribonuclease PH [Aromatoleum aromaticum EbN1]
 gi|81598865|sp|Q5P5J6|RNPH_AZOSE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|56312771|emb|CAI07416.1| Ribonuclease PH [Aromatoleum aromaticum EbN1]
          Length = 239

 Score =  260 bits (665), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 133/238 (55%), Positives = 170/238 (71%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R+ +Q+R + +TR  + +AEGS LV+FG T +L TA++E+ VP ++R    GW+T
Sbjct: 1   MRPSQRRPDQLRAVMITRNFTCHAEGSVLVEFGATRVLCTASVEDTVPPFLRGRGQGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVDLSALG RQI+IDCDV+Q
Sbjct: 61  AEYGMLPRATHTRSAREAAKGKQSGRTQEIQRLIGRSLRAVVDLSALGERQIVIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VA+HD  + +     K   S  L+  VAA+S GM  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGACVAVHDAFRKLV-TEGKLPYSP-LREFVAAVSVGMFQGVPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  D D N VMT +G  VEVQG+AE ATFS+    A+L LA+  I  L++ QK  I
Sbjct: 179 EDSGCDTDMNVVMTGAGGFVEVQGTAEGATFSRAELNALLELAESGIRRLVEAQKAAI 236


>gi|302877637|ref|YP_003846201.1| ribonuclease PH [Gallionella capsiferriformans ES-2]
 gi|302580426|gb|ADL54437.1| ribonuclease PH [Gallionella capsiferriformans ES-2]
          Length = 238

 Score =  260 bits (665), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 130/240 (54%), Positives = 170/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S RQ NQ+REI +TR  +K+AEGS L++ GDT ++ TA++EE+VP   + +  GW+T
Sbjct: 1   MRPSSRQANQLREIRITRHYTKHAEGSVLIECGDTKVICTASVEERVPPHKKGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R++REA  G+Q GR+QEIQR+IGR+LR+VVDL  LG R I IDCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMQREAAKGKQSGRTQEIQRLIGRSLRAVVDLKKLGERTIQIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D +  +            +   +AAIS G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAYVALQDAVSSL--IEKGLLTETPVTDAIAAISVGIYQGTPVLDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VM  SGH VEVQG+AE   FS+     +L LA++ I DLIK+Q+  ++ 
Sbjct: 179 EDSACDTDMNVVMLGSGHFVEVQGTAEGHAFSRVEMDQLLELAQNGIVDLIKMQQAALAG 238


>gi|257092562|ref|YP_003166203.1| ribonuclease PH [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045086|gb|ACV34274.1| ribonuclease PH [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 238

 Score =  260 bits (665), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 130/240 (54%), Positives = 169/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S RQ +Q+R++ +TR+ + +AEGS L++ GDT +L TA++EE VP + R T  GW+T
Sbjct: 1   MRPSQRQPSQLRQVRITRQFTSHAEGSVLIEIGDTRVLCTASVEEFVPPFRRGTGAGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R +REA  G+Q GR+QEIQR+IGRALR+V DL ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRTQREAAKGKQTGRTQEIQRLIGRALRAVTDLKALGERQITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR AAITGAW+AL+D   H+   +    +   L  HVAAIS G+  G P++DLDY 
Sbjct: 121 ADGGTRCAAITGAWLALNDACAHL--LAQGRLVVNPLSDHVAAISVGIYQGSPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS+ D D N VMT SG IVE+QG+AE   F++     +L+LA   I  LI  QK  ++ 
Sbjct: 179 EDSSCDTDMNVVMTGSGGIVEIQGTAEGVPFTRGQMNQLLDLADAGIGQLIARQKAALAQ 238


>gi|302381326|ref|YP_003817149.1| ribonuclease PH [Brevundimonas subvibrioides ATCC 15264]
 gi|302191954|gb|ADK99525.1| ribonuclease PH [Brevundimonas subvibrioides ATCC 15264]
          Length = 242

 Score =  260 bits (665), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 126/235 (53%), Positives = 166/235 (70%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q+R ++L   V++YAEGSCLV FG T +L TA++EE VP W+R    GW+T
Sbjct: 1   MRPSDRTPEQLRAVTLETGVNRYAEGSCLVSFGHTKVLVTASVEENVPGWMRGKGAGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQ++IDCDVIQ
Sbjct: 61  AEYGMLPRATHTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQVLIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVA+   L ++       ++  +L   VAA+SCG+    P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVAMATALNYLR-AEGVMKVDPILD-QVAAVSCGIFADTPVLDLDYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  + D NFV+T SG IVE+Q + E+  FS+  F  +  LA+    DL  LQ+
Sbjct: 179 EDSNAEADGNFVLTGSGTIVEIQATGEKRGFSRPEFDRLFQLAELGCNDLFALQR 233


>gi|209519146|ref|ZP_03267951.1| ribonuclease PH [Burkholderia sp. H160]
 gi|209500446|gb|EEA00497.1| ribonuclease PH [Burkholderia sp. H160]
          Length = 245

 Score =  260 bits (665), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 129/234 (55%), Positives = 170/234 (72%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGRQ NQ+R++ +TR  +K+AEGS LV+FGDT ++ TA++ E VP ++R+   GW+TA
Sbjct: 7   RPSGRQPNQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASISESVPPFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALRSV DL  LG+R + +DCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLNLDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   + + + S  +  +VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVAKLL-ATGRIE-SSPINDYVAAISVGVYDGVPVLDLDYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  D D N VMT +G  VE+QG+AE   FS+D   A+L+LA D I+ LI  QK
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMSALLDLASDGISTLIAKQK 238


>gi|99082712|ref|YP_614866.1| RNAse PH [Ruegeria sp. TM1040]
 gi|122397509|sp|Q1GCL2|RNPH_SILST RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|99038992|gb|ABF65604.1| RNAse PH [Ruegeria sp. TM1040]
          Length = 237

 Score =  260 bits (665), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 126/235 (53%), Positives = 169/235 (71%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  N+MR +S+    +K+AEGSCL+K GDTH+L TAT+E++VP +I+ +  GW+T
Sbjct: 1   MRPSGRALNEMRSVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA SG+QGGR+ EIQR+IGRALR+ VD  ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +    +       L   V+AISCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDVTM--DPLVDPVSAISCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS   VD NF+MT SG ++EVQ SAE + FS+D    +++LA    ++L ++QK
Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEVQMSAEGSVFSRDQMNELMDLAAKGTSELAEMQK 233


>gi|167563697|ref|ZP_02356613.1| ribonuclease PH [Burkholderia oklahomensis EO147]
          Length = 243

 Score =  260 bits (665), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 128/234 (54%), Positives = 172/234 (73%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ NQ+R++ +TRR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+   GW+TA
Sbjct: 7   RPSGRRANQLRDVRITRRYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R + +DCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLDALGPRTLHLDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   + K   S +   +VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVTKLV-ATGKIPRSPITD-YVAAISVGVFGGAPVLDLDYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  D D N VMT SG  VEVQG+AE   FS+    A+L+LA+  I +L+++Q+
Sbjct: 185 DSACDTDMNVVMTGSGGFVEVQGTAEGVPFSRAEMNALLDLAQAGIGELVRVQR 238


>gi|259418160|ref|ZP_05742079.1| ribonuclease PH [Silicibacter sp. TrichCH4B]
 gi|259347066|gb|EEW58880.1| ribonuclease PH [Silicibacter sp. TrichCH4B]
          Length = 237

 Score =  260 bits (665), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 126/235 (53%), Positives = 169/235 (71%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  N+MR +S+    +K+AEGSCL+K GDTH+L TAT+E++VP +I+ +  GW+T
Sbjct: 1   MRPSGRALNEMRSVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA SG+QGGR+ EIQR+IGRALR+ VD  ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +    +       L   V+AISCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDVTM--DPLVDPVSAISCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS   VD NF+MT SG ++EVQ SAE + FS+D    +++LA    ++L ++QK
Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEVQMSAEGSVFSRDQMNELMDLATKGTSELAEMQK 233


>gi|91225015|ref|ZP_01260274.1| ribonuclease PH [Vibrio alginolyticus 12G01]
 gi|91190261|gb|EAS76531.1| ribonuclease PH [Vibrio alginolyticus 12G01]
          Length = 238

 Score =  260 bits (665), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 126/240 (52%), Positives = 171/240 (71%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GWIT
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ D S K + +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVD-SGKLK-ANPMKGHVAAVSVGLLGDEVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +   A+L  AK  I +++  QK  ++N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 238


>gi|167570847|ref|ZP_02363721.1| ribonuclease PH [Burkholderia oklahomensis C6786]
          Length = 243

 Score =  260 bits (664), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 128/234 (54%), Positives = 172/234 (73%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ NQ+R++ +TRR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+   GW+TA
Sbjct: 7   RPSGRRANQLRDVRITRRYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R + +DCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLDALGPRTLHLDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   + K   S +   +VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVTKLV-STGKIPRSPITD-YVAAISVGVFGGAPVLDLDYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  D D N VMT SG  VEVQG+AE   FS+    A+L+LA+  I +L+++Q+
Sbjct: 185 DSACDTDMNVVMTGSGGFVEVQGTAEGVPFSRAEMNALLDLAQAGIGELVRVQR 238


>gi|295677344|ref|YP_003605868.1| ribonuclease PH [Burkholderia sp. CCGE1002]
 gi|295437187|gb|ADG16357.1| ribonuclease PH [Burkholderia sp. CCGE1002]
          Length = 245

 Score =  260 bits (664), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 129/237 (54%), Positives = 172/237 (72%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGRQ NQ+R++ +TR  +K+AEGS LV+FGDT ++ TA++ E VP ++R+   GW+TA
Sbjct: 7   RPSGRQPNQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASVSESVPPFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALRSV DL  LG+R I +DCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTINLDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   + + + S +   +VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVARLL-ATGRIESSPITD-YVAAISVGVYDGVPVLDLDYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VMT +G  VE+QG+AE   FS++   A+L+LA D I+ LI  QK+ +
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSREEMNALLDLASDGISTLIAKQKEAL 241


>gi|269965906|ref|ZP_06179999.1| ribonuclease PH [Vibrio alginolyticus 40B]
 gi|269829459|gb|EEZ83700.1| ribonuclease PH [Vibrio alginolyticus 40B]
          Length = 240

 Score =  260 bits (664), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 125/240 (52%), Positives = 171/240 (71%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 3   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 63  AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ D S K + +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 123 ADGGTRTASISGASVAMADAFQHLVD-SGKLK-ANPMKGHVAAVSVGLLGDEVLCDLEYV 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +   A+L  AK  I +++  QK  ++N
Sbjct: 181 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 240


>gi|89093846|ref|ZP_01166792.1| Ribonuclease PH [Oceanospirillum sp. MED92]
 gi|89081976|gb|EAR61202.1| Ribonuclease PH [Oceanospirillum sp. MED92]
          Length = 256

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 120/238 (50%), Positives = 171/238 (71%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +QMRE+ +TR  +K+AEGS LV+FG+T +L TAT+E  VP ++R +  GW+TA
Sbjct: 18  RPSGRDNDQMREVKITRNFTKHAEGSVLVEFGETKVLCTATVERGVPRFLRGSGQGWVTA 77

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+QGGR+ EIQR+IGR+LR+ +DL+ LG   I +DCDV+QA
Sbjct: 78  EYGMLPRSTTTRNAREAAKGKQGGRTVEIQRLIGRSLRAALDLNKLGENTITLDCDVLQA 137

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  ++   N       +K  +AA+S G+  G  ++DLDY E
Sbjct: 138 DGGTRTASITGAFVALQDAINVLKQDKNGAMKGDPIKQAIAAVSVGIFEGEAVLDLDYAE 197

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  + D N +MT  G  +EVQG+AE A ++Q+   AML+LA+  I+++++LQ++ ++
Sbjct: 198 DSKAETDMNVIMTSKGGFIEVQGTAEGAPYTQEELNAMLDLARKGISEIVELQQEALA 255


>gi|119382767|ref|YP_913823.1| ribonuclease PH [Paracoccus denitrificans PD1222]
 gi|119372534|gb|ABL68127.1| RNAse PH [Paracoccus denitrificans PD1222]
          Length = 241

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/239 (51%), Positives = 169/239 (70%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  + MR IS+   + ++AEGSCL+  GDT +L +A++EEK P +++ +  GW+T
Sbjct: 2   MRPSGRNLSDMRPISIETGIMRHAEGSCLISCGDTRVLCSASIEEKAPPFLKGSGQGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+QEIQR+IGRALR+ VD  ALG RQI++DCDVIQ
Sbjct: 62  AEYGMLPRATNTRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRRALGERQIVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR AAITG WVAL   +  +         +  +  HVAA+SCG+  G PI+DLDY 
Sbjct: 122 ADGGTRCAAITGGWVALRLAMNKL--LKAGIVTADPIMDHVAAVSCGIYAGQPILDLDYA 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D NF+MT +G ++EVQ SAE ATFS+     +L+LA+  IA+L++ Q + ++
Sbjct: 180 EDSEAGTDGNFIMTGAGRLIEVQMSAEGATFSRPEMNQLLDLAEAGIAELVRAQNEAVA 238


>gi|209693820|ref|YP_002261748.1| ribonuclease PH [Aliivibrio salmonicida LFI1238]
 gi|226736880|sp|B6EPI9|RNPH_ALISL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|208007771|emb|CAQ77892.1| ribonuclease PH [Aliivibrio salmonicida LFI1238]
          Length = 238

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 129/239 (53%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q+R I++TR  + +AEGS LV+FG+T ++ TA++EE VP W++    GW+T
Sbjct: 1   MRPSGRTAQQVRPITITRHFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA SG+QGGR+ EIQR+I R+LR+ VDL ALG + I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNNREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D + HM   S K +    +KGHVAA+S G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASITGASVALADAINHM-IASGKLK-KNPMKGHVAAVSVGIYKGEAICDLEYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VM + G ++EVQG+AE A FS      ML LA+  I D+I+ QK  ++
Sbjct: 179 EDSAADTDMNVVMMEDGKMIEVQGTAEVAPFSHQELLDMLALAQQGINDIIEKQKAALA 237


>gi|329901883|ref|ZP_08272970.1| Ribonuclease PH [Oxalobacteraceae bacterium IMCC9480]
 gi|327548975|gb|EGF33592.1| Ribonuclease PH [Oxalobacteraceae bacterium IMCC9480]
          Length = 244

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 128/235 (54%), Positives = 166/235 (70%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R SGR  + +R + LTR  +K+AEGS L++FGDT ++ TA++E+KVP +++    GW+T
Sbjct: 5   LRPSGRTADALRPVRLTRHYTKHAEGSVLIEFGDTKVICTASIEDKVPGFLKGKGQGWMT 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGR+LR+  DLSA G R + +DCDVIQ
Sbjct: 65  AEYGMLPRSTHTRMAREAAKGKQSGRTQEIQRLIGRSLRAAFDLSAFGERTLHLDCDVIQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VA HD    + D      +   LK  VAAIS G+  G P++DLDY 
Sbjct: 125 ADGGTRTASITGAMVAAHDAFSKLVDTGVLSAMP--LKHFVAAISVGVFQGTPVLDLDYD 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDST D D N VMTD+GH +EVQG+AE A F +     +L+LA   I DLI LQ+
Sbjct: 183 EDSTCDTDMNVVMTDAGHFIEVQGTAEGAAFDRATMNQLLDLADGGIRDLIALQR 237


>gi|187925061|ref|YP_001896703.1| ribonuclease PH [Burkholderia phytofirmans PsJN]
 gi|226736896|sp|B2T6B5|RNPH_BURPP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|187716255|gb|ACD17479.1| ribonuclease PH [Burkholderia phytofirmans PsJN]
          Length = 246

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 130/234 (55%), Positives = 169/234 (72%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGRQ NQ+R++ +TR  +K+AEGS LV+FGDT ++ TA++ E VP ++R+   GW+TA
Sbjct: 7   RPSGRQANQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAESVPSFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALRSV DL  LG+R + IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   + + + S +   +VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVAKLL-ATGRIESSPITD-YVAAISVGVYDGLPVLDLDYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  D D N VMT +G  VE+QG+AE   FS+D   A+L+LA D I  LI  QK
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVAFSRDEMNALLDLASDGINTLIAKQK 238


>gi|163742618|ref|ZP_02150004.1| ribonuclease PH [Phaeobacter gallaeciensis 2.10]
 gi|161384203|gb|EDQ08586.1| ribonuclease PH [Phaeobacter gallaeciensis 2.10]
          Length = 237

 Score =  259 bits (662), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 126/235 (53%), Positives = 172/235 (73%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +QMR +S+    +K+AEGSCL+K GDTH+L TAT+E++VP +I+ +  GW+T
Sbjct: 1   MRPSGRNLDQMRAVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA  G+QGGR+ EIQR+IGRALR+ VD  ALG RQI IDCDV+Q
Sbjct: 61  AEYGMLPRATNTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRVALGERQISIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +   + + ++  ++   VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMK-TGEVKIDPLVD-PVAAVSCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS   VD NF+MT SG ++EVQ SAE + FS++    +++LA    A+L +LQK
Sbjct: 179 EDSEAGVDGNFIMTGSGQLIEVQMSAEGSMFSREQMNTLMDLATKGTAELAELQK 233


>gi|114571545|ref|YP_758225.1| ribonuclease PH [Maricaulis maris MCS10]
 gi|122314919|sp|Q0AKA6|RNPH_MARMM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|114342007|gb|ABI67287.1| RNAse PH [Maricaulis maris MCS10]
          Length = 238

 Score =  259 bits (662), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 129/234 (55%), Positives = 162/234 (69%), Gaps = 2/234 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR  + MREI L   VS YAEGSCL +FG TH+L TA++EE VP W+R    GW+T
Sbjct: 1   MRPHGRARDAMREIKLEAGVSVYAEGSCLARFGGTHVLCTASIEESVPPWMRGGGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI IDCDV+Q
Sbjct: 61  AEYGMLPRATHTRSRREATAGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVAL     ++         S  + G +AAISCG++ G   +DL+Y 
Sbjct: 121 ADGGTRTAAITGAWVALKQATGYL--IEEGLLTSDPVHGQLAAISCGVIDGETRLDLEYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           ED   + DANFV+TD+G IVE+Q +AE     +  F  +  LAK  + DL + Q
Sbjct: 179 EDRRAEADANFVLTDTGGIVEIQATAEDKPIPETDFDLLFALAKAGVVDLCEAQ 232


>gi|237813382|ref|YP_002897833.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei MSHR346]
 gi|237506567|gb|ACQ98885.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei MSHR346]
          Length = 243

 Score =  259 bits (662), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 126/235 (53%), Positives = 174/235 (74%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R SGR+ +Q+R++ +TR  +K+AEG+ LV+FGDT ++ TA++ E+VP ++R    GW+T
Sbjct: 6   LRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLT 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQ
Sbjct: 66  AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQ 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA HD +  +   + +   S +   +VAAIS G+  G P++DLDYG
Sbjct: 126 ADGGTRTASITGAFVAAHDAVTKLV-AAGRIARSPITD-YVAAISVGVFGGTPVLDLDYG 183

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  D D N VMT +G  VEVQG+AE A FS+    A+L+LA+  I +L++LQ+
Sbjct: 184 EDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQR 238


>gi|260431972|ref|ZP_05785943.1| ribonuclease PH [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415800|gb|EEX09059.1| ribonuclease PH [Silicibacter lacuscaerulensis ITI-1157]
          Length = 237

 Score =  259 bits (662), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/235 (52%), Positives = 170/235 (72%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  ++MR +S+    +K+AEGSCL+K GDTH+L TAT+E++VP +I+ +  GW+T
Sbjct: 1   MRPSGRDLSEMRPVSIETGFTKHAEGSCLIKIGDTHVLCTATIEDRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA SG+QGGR+ EIQR+IGRALR+ VD  ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +    +   ++  L   VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDV--ITDPLVDPVAAVSCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS   VD NF+MT SG ++EVQ SAE + FS+     ++ LA+  +++L+  QK
Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEVQMSAEGSVFSRAQMDQLMELAEKGVSELVAAQK 233


>gi|163745104|ref|ZP_02152464.1| ribonuclease PH [Oceanibulbus indolifex HEL-45]
 gi|161381922|gb|EDQ06331.1| ribonuclease PH [Oceanibulbus indolifex HEL-45]
          Length = 237

 Score =  259 bits (662), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 123/239 (51%), Positives = 174/239 (72%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ ++MR +S+    +K+AEGS L+K GDTH+L TAT+E++VP +I+ +  GW+T
Sbjct: 1   MRPSGRKLDEMRAVSIETGFTKHAEGSALIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA  G+QGGR+ EIQR+IGRALR+ VD SALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATNTRMRREAALGKQGGRTVEIQRLIGRALRAGVDRSALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG W+AL   +  +    +   +S  L   VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWIALRLAVNKLMKAGD--VVSDPLVDPVAAVSCGIYAGQPLLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD NF+MT SG ++E+Q SAE +T+++D    +++LA+  + +L  +QK V +
Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEIQMSAEGSTYTRDQMNQLMDLAEKGVGELAAIQKSVTA 237


>gi|269103912|ref|ZP_06156609.1| ribonuclease PH [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163810|gb|EEZ42306.1| ribonuclease PH [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 238

 Score =  259 bits (662), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 125/240 (52%), Positives = 169/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R I++TR+ + +AEGS LV+FG+T ++ TA++EE VP W++    GW+T
Sbjct: 1   MRPSGRSASQVRPITITRQFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+ VDL  LG + I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEVLGEQMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D + +M            LK  VAA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTASITGAMVALVDAIHYM--LEKGMIKKNPLKTMVAAVSVGIYNGEPICDLEYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G ++E+QG+AE   FS +   AML LAK+ I ++I  QK  ++N
Sbjct: 179 EDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKEGINEIIAQQKQALAN 238


>gi|254362020|ref|ZP_04978149.1| tRNA nucleotidyltransferase [Mannheimia haemolytica PHL213]
 gi|153093571|gb|EDN74545.1| tRNA nucleotidyltransferase [Mannheimia haemolytica PHL213]
          Length = 238

 Score =  259 bits (662), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 170/239 (71%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  NQ+REI +TR  ++YAEGS L++FG+T +L  AT+EE VP +++  + GW+T
Sbjct: 1   MRPNNRANNQVREIKITRNYTRYAEGSVLIEFGETKVLCNATVEESVPRFLKGQQQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL+D +  +   +N    +  +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALYDAMNKL--VANGTLKTNPMKGLVAAISVGIVAGEAVCDLEYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G +VEVQG+AE   FS      +L+LAK  I+ L++ Q+  ++
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHQELLTLLDLAKQGISQLVEAQRKALA 237


>gi|330815847|ref|YP_004359552.1| Ribonuclease PH [Burkholderia gladioli BSR3]
 gi|327368240|gb|AEA59596.1| Ribonuclease PH [Burkholderia gladioli BSR3]
          Length = 243

 Score =  259 bits (661), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 131/239 (54%), Positives = 172/239 (71%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+RE+ LTR  +K+AEGS LV+FGDT ++ TA++ E+VP ++R+   GW+TA
Sbjct: 7   RPSGRPADQLREVRLTRHYTKHAEGSVLVEFGDTKVICTASVVERVPEFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+VVDL  LG+R I IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVVDLEQLGARTIHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA+ D +  +   + K   S +    VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAVQDAVAKLI-AAGKLASSPITD-SVAAISVGVYQGTPVLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  D D N VMT  G +VEVQG+AE   F++D   A+L+LA+  I +LI LQK  + +
Sbjct: 185 DSRCDTDMNVVMTGKGGLVEVQGTAEGVPFTRDEMNALLDLAQKGIGELIALQKAALGD 243


>gi|254228598|ref|ZP_04922023.1| ribonuclease PH [Vibrio sp. Ex25]
 gi|151938980|gb|EDN57813.1| ribonuclease PH [Vibrio sp. Ex25]
          Length = 240

 Score =  259 bits (661), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 125/240 (52%), Positives = 171/240 (71%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 3   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 63  AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ D S K + +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 123 ADGGTRTASISGASVAMADAFQHLVD-SGKLK-ANPMKGHVAAVSVGLLGDDVLCDLEYV 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +   A+L  AK  I +++  QK  ++N
Sbjct: 181 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKIGITEIVAAQKAALAN 240


>gi|262392601|ref|YP_003284455.1| ribonuclease PH [Vibrio sp. Ex25]
 gi|262336195|gb|ACY49990.1| ribonuclease PH [Vibrio sp. Ex25]
          Length = 238

 Score =  259 bits (661), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 125/240 (52%), Positives = 171/240 (71%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ D S K + +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVD-SGKLK-ANPMKGHVAAVSVGLLGDDVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +   A+L  AK  I +++  QK  ++N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKIGITEIVAAQKAALAN 238


>gi|315497101|ref|YP_004085905.1| ribonuclease ph [Asticcacaulis excentricus CB 48]
 gi|315415113|gb|ADU11754.1| ribonuclease PH [Asticcacaulis excentricus CB 48]
          Length = 250

 Score =  259 bits (661), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 124/237 (52%), Positives = 169/237 (71%), Gaps = 4/237 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R S RQ +Q+R+++L   V++YAEGSCL+  G T +L TA++E+ VP +++    GW+T
Sbjct: 13  FRPSNRQADQLRKVTLETGVTRYAEGSCLITVGHTKVLATASVEQGVPPFLKGKGQGWVT 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 73  AEYGMLPRSTHTRSRREAAAGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVIQ 132

Query: 121 ADGGTRTAAITGAWVALH-DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTR A+IT AWVAL   C + +E    K   +  +   VAA+SCG+    P++DLDY
Sbjct: 133 ADGGTRCASITAAWVALSLACDKLLE---QKLISASPIIDQVAAVSCGVFENVPVLDLDY 189

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            EDST + D+NFV+T SGHIVE+Q + E+  FS+D F  + +LA     +L  LQ++
Sbjct: 190 DEDSTAETDSNFVLTGSGHIVEIQATGEKRGFSRDEFNTLFDLATQGATELFALQRE 246


>gi|328471748|gb|EGF42625.1| ribonuclease PH [Vibrio parahaemolyticus 10329]
          Length = 238

 Score =  259 bits (661), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 125/240 (52%), Positives = 171/240 (71%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ D S K + +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVD-SGKLK-ANPMKGHVAAVSVGLLGDEVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +   A+L  AK  I ++I  QK  ++N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIIAAQKAALAN 238


>gi|71278026|ref|YP_266880.1| ribonuclease PH [Colwellia psychrerythraea 34H]
 gi|123634261|sp|Q48AN3|RNPH_COLP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|71143766|gb|AAZ24239.1| ribonuclease PH [Colwellia psychrerythraea 34H]
          Length = 237

 Score =  258 bits (660), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 129/239 (53%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q+R +++TR+ + +AEGS L++FGDT ++ TAT+E  VP +++    GW+T
Sbjct: 1   MRPSGRTLGQIRPVTITRQFTTHAEGSVLIEFGDTKVICTATVEVGVPRFLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R++REA SG+Q GR+ EI R+I RALR+ VDL ALG   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHTRMRREAASGKQSGRTLEISRLIARALRAAVDLKALGENTISVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D L +M   +     +  LK  +AA+S G+  G P+ DLDY 
Sbjct: 121 ADGGTRTAAITGACVALVDALNYMR--AKDIIKTNPLKHMIAAVSVGIYKGEPVADLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMTD+G ++EVQG+AE   FS +   AML LAK+ I +L  LQK  +S
Sbjct: 179 EDSAADTDMNVVMTDTGKLIEVQGTAEEEPFSFEEMQAMLELAKNGINELFDLQKAALS 237


>gi|329847441|ref|ZP_08262469.1| ribonuclease PH [Asticcacaulis biprosthecum C19]
 gi|328842504|gb|EGF92073.1| ribonuclease PH [Asticcacaulis biprosthecum C19]
          Length = 250

 Score =  258 bits (660), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 124/238 (52%), Positives = 167/238 (70%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R S R+ +QMR ++L   V++YAEGSCLV FG T +L TA++E  VP +++    GW+T
Sbjct: 13  IRPSNRKPDQMRNVTLETGVTRYAEGSCLVTFGHTRVLVTASVETGVPSFLKGKGQGWVT 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R +REA +G+Q GR+QEIQR+IGR++R+V+DL ALG RQI +DCDV+Q
Sbjct: 73  AEYGMLPRSTHTRSRREAATGKQSGRTQEIQRLIGRSMRAVIDLKALGERQITLDCDVLQ 132

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL      +   ++K      L   VAAISCG+    P++DLDY 
Sbjct: 133 ADGGTRTASITGAWVALAAACDKL--VADKIIEKSPLLDQVAAISCGIFEAVPVLDLDYD 190

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + DANFV+T SGH VE+Q + E+  FS+  F  + +LA    ++L  LQ  V+
Sbjct: 191 EDSNAETDANFVITGSGHAVEIQATGEKRGFSRQEFDTLYDLALKGTSELFALQNQVL 248


>gi|253997760|ref|YP_003049823.1| ribonuclease PH [Methylovorus sp. SIP3-4]
 gi|253984439|gb|ACT49296.1| ribonuclease PH [Methylovorus sp. SIP3-4]
          Length = 238

 Score =  258 bits (660), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 129/234 (55%), Positives = 166/234 (70%), Gaps = 2/234 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R+ +Q+R I + R  +K+AEGS LVKFGDTH+L TA+++EKVP ++R    GW+T
Sbjct: 1   MRPSQRETHQLRPIEIIRHYTKHAEGSVLVKFGDTHVLCTASVDEKVPGFLRGKNQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R+ REA  G+Q GR+QEIQR+IGR+LR+++DL  LG R I IDCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMDREAARGKQSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VALHD +  +   +        L+  VAA+S G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAYVALHDAISRL--LAQGLISESPLRDSVAAVSVGVYQGTPVLDLDYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           EDS  D D N VMT SG  VE+QG+AE   F +     ML+LA   I +L  LQ
Sbjct: 179 EDSDCDTDMNVVMTGSGGYVEIQGTAEGVPFQRADMDRMLDLAAAGIRELTSLQ 232


>gi|238026484|ref|YP_002910715.1| ribonuclease PH [Burkholderia glumae BGR1]
 gi|237875678|gb|ACR28011.1| Ribonuclease PH [Burkholderia glumae BGR1]
          Length = 243

 Score =  258 bits (660), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 132/234 (56%), Positives = 170/234 (72%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGRQ +Q+RE+ LTR  +K+AEGS LV+FGDT ++ TA++ E+VP ++R+   GW+TA
Sbjct: 7   RPSGRQADQLREVRLTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+VVDL  LG R I IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVVDLEHLGPRTIHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA+ D +  +     K   S +    VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAVQDAVAKLV-ADGKLPRSPI-SDSVAAISVGVYQGTPLLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  D D N VMT +G +VEVQG+AE A F++    A+L+LA+  I +LI LQK
Sbjct: 185 DSRCDTDMNVVMTGAGGLVEVQGTAEGAPFTRAEMDALLDLAQKGIGELIALQK 238


>gi|226941559|ref|YP_002796633.1| RnpH [Laribacter hongkongensis HLHK9]
 gi|254808590|sp|C1DCK5|RNPH_LARHH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226716486|gb|ACO75624.1| RnpH [Laribacter hongkongensis HLHK9]
          Length = 238

 Score =  258 bits (660), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 125/235 (53%), Positives = 169/235 (71%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R +   R  +++AEGS LV+FGDT ++ TAT+EE VP +++    GW+T
Sbjct: 1   MRPSQRAASELRPVRFIRHYTRHAEGSVLVEFGDTKVICTATVEESVPGFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA SG+Q GR+QEIQR+IGR+LR+VVDL  LG RQI++DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMRREAASGKQSGRTQEIQRLIGRSLRAVVDLQKLGERQIVVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GAWVAL D +  +   +        L+ HVAA+S GM+ G P++DLDY 
Sbjct: 121 ADGGTRTASISGAWVALADAIDGL--MAKGLLTENPLRDHVAAVSVGMVDGQPVLDLDYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  D D N VMT  G  VE+QG+AE   FS++   A+L LA + I  ++ LQ+
Sbjct: 179 EDSGCDTDMNVVMTGQGGFVEIQGTAEGVPFSREDMQALLALADEGIRAIVGLQQ 233


>gi|56694936|ref|YP_165281.1| ribonuclease PH [Ruegeria pomeroyi DSS-3]
 gi|81350765|sp|Q5LWF6|RNPH_SILPO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|56676673|gb|AAV93339.1| ribonuclease PH [Ruegeria pomeroyi DSS-3]
          Length = 237

 Score =  258 bits (660), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 125/234 (53%), Positives = 168/234 (71%), Gaps = 2/234 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  ++MR +S+    +K+AEGSCL+K GDTH+L TAT+E++VP +I+ +  GW+T
Sbjct: 1   MRPSGRDLSEMRPVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA SG+QGGR+ EIQR+IGRALR+ VD  ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +    +   +S  L   VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDV--ISDPLVDPVAAVSCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           EDS   VD NF+MT SG ++EVQ SAE + F++     +L LA+  + +L+  Q
Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEVQMSAEGSVFNRAQLDQLLGLAEKGVGELVAAQ 232


>gi|86136764|ref|ZP_01055342.1| ribonuclease PH [Roseobacter sp. MED193]
 gi|85826088|gb|EAQ46285.1| ribonuclease PH [Roseobacter sp. MED193]
          Length = 237

 Score =  258 bits (660), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 126/235 (53%), Positives = 171/235 (72%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R+ N+MR +S+    +K+AEGSCL+K G+TH+L TA+LE +VP +I+ +  GW+T
Sbjct: 1   MRPSNRELNEMRSVSIETGFTKHAEGSCLIKMGETHVLCTASLEPRVPSFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA +G+QGGR+ EIQR+IGRALR+ VD  ALG RQI IDCDV+Q
Sbjct: 61  AEYGMLPRATNTRMRREAAAGKQGGRTVEIQRLIGRALRAGVDRVALGERQITIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR AAITG WVAL   +  +   + + ++  ++   V+AISCG+  G P++DLDY 
Sbjct: 121 ADGGTRCAAITGGWVALRLAVNKLMK-AGEVKIDPLMD-PVSAISCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS   VD NFVMT SG ++EVQ SAE + FS+D    +++LA+    +L  LQK
Sbjct: 179 EDSEAGVDGNFVMTGSGKLIEVQMSAEGSVFSRDQMNQLMDLAEKGTQELAALQK 233


>gi|21759411|sp|Q9AES0|RNPH_PASHA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|13591380|gb|AAK29744.1| ribonuclease PH-like protein [Mannheimia haemolytica]
          Length = 238

 Score =  258 bits (659), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 169/239 (70%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  NQ+REI +TR  ++YAEGS L++FG+T +L  AT+EE VP +++  + GW+T
Sbjct: 1   MRPNNRANNQVREIKITRNYTRYAEGSVLIEFGETKVLCNATVEESVPRFLKGQQQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL+D +  +   +N    +  +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALYDAMNKL--VANGTLKTNPMKGLVAAISVGIVAGEAVCDLEYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM   G +VEVQG+AE   FS      +L+LAK  I+ L++ Q+  ++
Sbjct: 179 EDSNAETDMNVVMVQDGRLVEVQGTAEGEPFSHQELLTLLDLAKQGISQLVEAQRKALA 237


>gi|153837893|ref|ZP_01990560.1| ribonuclease PH [Vibrio parahaemolyticus AQ3810]
 gi|260902523|ref|ZP_05910918.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AQ4037]
 gi|149748756|gb|EDM59601.1| ribonuclease PH [Vibrio parahaemolyticus AQ3810]
 gi|308109638|gb|EFO47178.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AQ4037]
          Length = 238

 Score =  258 bits (659), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 124/240 (51%), Positives = 171/240 (71%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ D S K + +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVD-SGKLK-ANPMKGHVAAVSVGLLGDEVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +   A+L  AK  I +++  QK  ++N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 238


>gi|28896951|ref|NP_796556.1| ribonuclease PH [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365861|ref|ZP_05778355.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus K5030]
 gi|260877852|ref|ZP_05890207.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AN-5034]
 gi|260895499|ref|ZP_05903995.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus Peru-466]
 gi|33301645|sp|Q87T93|RNPH_VIBPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|28805159|dbj|BAC58440.1| ribonuclease PH [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088601|gb|EFO38296.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus Peru-466]
 gi|308089812|gb|EFO39507.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AN-5034]
 gi|308113474|gb|EFO51014.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus K5030]
          Length = 238

 Score =  258 bits (659), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 124/240 (51%), Positives = 171/240 (71%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ D S K + +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVD-SGKLK-ANPMKGHVAAVSVGLLGDEVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +   A+L  AK  I +++  QK  ++N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 238


>gi|126438556|ref|YP_001059966.1| ribonuclease PH [Burkholderia pseudomallei 668]
 gi|167903809|ref|ZP_02491014.1| ribonuclease PH [Burkholderia pseudomallei NCTC 13177]
 gi|166228273|sp|A3NC95|RNPH_BURP6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|126218049|gb|ABN81555.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 668]
          Length = 243

 Score =  258 bits (659), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 126/235 (53%), Positives = 173/235 (73%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R SGR+ +Q+R++ +TR  +K+AEG+ LV+FGDT ++ TA++ E+VP ++R    GW+T
Sbjct: 6   LRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLT 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQ
Sbjct: 66  AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQ 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA HD +  +   + +   S +   +VAAIS GM  G P++DLDY 
Sbjct: 126 ADGGTRTASITGAFVAAHDAVTKLV-AAGRIARSPITD-YVAAISVGMFGGTPVLDLDYD 183

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  D D N VMT +G  VEVQG+AE A FS+    A+L+LA+  I +L++LQ+
Sbjct: 184 EDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQR 238


>gi|27364280|ref|NP_759808.1| ribonuclease PH [Vibrio vulnificus CMCP6]
 gi|37678463|ref|NP_933072.1| ribonuclease PH [Vibrio vulnificus YJ016]
 gi|320157673|ref|YP_004190052.1| ribonuclease PH [Vibrio vulnificus MO6-24/O]
 gi|33301654|sp|Q8DDX4|RNPH_VIBVU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61216003|sp|Q7MPT3|RNPH_VIBVY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|27360398|gb|AAO09335.1| ribonuclease PH [Vibrio vulnificus CMCP6]
 gi|37197203|dbj|BAC93043.1| RNase PH [Vibrio vulnificus YJ016]
 gi|319932985|gb|ADV87849.1| ribonuclease PH [Vibrio vulnificus MO6-24/O]
          Length = 238

 Score =  258 bits (658), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 124/240 (51%), Positives = 171/240 (71%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLEAMGEFMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ D S K + +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVD-SGKLK-ANPMKGHVAAVSVGILGEDVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +   A+L  AK  I++++  QK  ++N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLALLESAKKGISEIVAAQKAALAN 238


>gi|167837502|ref|ZP_02464385.1| ribonuclease PH [Burkholderia thailandensis MSMB43]
          Length = 243

 Score =  258 bits (658), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 127/234 (54%), Positives = 172/234 (73%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ +Q+R++ +TR  +K+AEGS LV+FGDT ++ TA++ E+VP ++R    GW+TA
Sbjct: 7   RPSGRRADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   + K   S +   +VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVTQLV-AAGKIARSPITD-YVAAISVGVFGGAPVLDLDYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  D D N VMT +G  VEVQG+AE A FS+    A+L+LA+  I +L++LQ+
Sbjct: 185 DSACDTDMNIVMTGAGGFVEVQGTAEGAPFSRAEMNALLDLAQAGIGELVRLQR 238


>gi|303258091|ref|ZP_07344099.1| tRNA nucleotidyltransferase [Burkholderiales bacterium 1_1_47]
 gi|330998696|ref|ZP_08322425.1| tRNA nucleotidyltransferase [Parasutterella excrementihominis YIT
           11859]
 gi|302859110|gb|EFL82193.1| tRNA nucleotidyltransferase [Burkholderiales bacterium 1_1_47]
 gi|329576435|gb|EGG57947.1| tRNA nucleotidyltransferase [Parasutterella excrementihominis YIT
           11859]
          Length = 245

 Score =  258 bits (658), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 125/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ +++R I +TR  +KYAEGS L++ G T ++ TA++EEKVP W+++   GW+TA
Sbjct: 8   RPSGRKADELRPIKITRHYTKYAEGSVLIEVGGTKVICTASVEEKVPGWLKDQGKGWVTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R  REA  G+Q GR+QEIQR+IGR+LR+VVD+ ALG R I IDCDV QA
Sbjct: 68  EYGMLPRATGTRTDREAAKGKQSGRTQEIQRLIGRSLRAVVDMEALGERMIKIDCDVTQA 127

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+ITGA+VAL D +  +    N       LKG VAA+S G+  G P+ D DY E
Sbjct: 128 DGGTRCASITGAYVALADAVNWL--IKNGSLEKSPLKGQVAALSVGIYEGVPVADFDYDE 185

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D   D D N VMTD+G  VE+QG+AE   FS++   A+L LA+D +  L   Q+  ++ E
Sbjct: 186 DHLSDTDMNVVMTDAGKFVELQGTAEGEPFSREDLDALLKLAEDGLKQLFAAQRAALAEE 245


>gi|163802281|ref|ZP_02196176.1| ribonuclease PH [Vibrio sp. AND4]
 gi|159174086|gb|EDP58896.1| ribonuclease PH [Vibrio sp. AND4]
          Length = 238

 Score =  258 bits (658), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 124/240 (51%), Positives = 170/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G   + +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMVTVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ D S K + +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVD-SGKLK-ANPMKGHVAAVSVGLLGEDVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +   A+L  AK  I +++  QK  + N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKIGITEIVAAQKAALEN 238


>gi|156972970|ref|YP_001443877.1| ribonuclease PH [Vibrio harveyi ATCC BAA-1116]
 gi|269959372|ref|ZP_06173755.1| ribonuclease PH [Vibrio harveyi 1DA3]
 gi|156524564|gb|ABU69650.1| hypothetical protein VIBHAR_00648 [Vibrio harveyi ATCC BAA-1116]
 gi|269835809|gb|EEZ89885.1| ribonuclease PH [Vibrio harveyi 1DA3]
          Length = 240

 Score =  258 bits (658), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 124/240 (51%), Positives = 171/240 (71%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 3   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 63  AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ D S K + +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 123 ADGGTRTASISGASVAMADAFQHLVD-SGKLK-ANPMKGHVAAVSVGLLGDDVLCDLEYV 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +   A+L  AK  I +++  QK  ++N
Sbjct: 181 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 240


>gi|330719753|gb|EGG98274.1| Ribonuclease PH [gamma proteobacterium IMCC2047]
          Length = 238

 Score =  257 bits (657), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 127/239 (53%), Positives = 169/239 (70%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+RE+ +TR  +K+AEGS LV+FGDT ++ TAT E  VP ++R    GW+T
Sbjct: 1   MRPSGRTPDQLREVKITRNYTKHAEGSVLVEFGDTKVICTATAETGVPHFLRGKGVGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R+ REA  G+QGGR+ EIQR+IGR+LR+ +D+  LG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAIDMKKLGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +   S     +  +K  +AA+S G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGACVALVDAVNSLR--SKGAIKADPIKHRIAAVSVGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N +MTDSG  VEVQG+AE+  FS      ML LA+  IA+L +LQ+  ++
Sbjct: 179 EDSNAETDLNLIMTDSGGFVEVQGTAEQEPFSATELADMLKLAELGIANLSELQQQALA 237


>gi|153835514|ref|ZP_01988181.1| ribonuclease PH [Vibrio harveyi HY01]
 gi|148867911|gb|EDL67124.1| ribonuclease PH [Vibrio harveyi HY01]
          Length = 238

 Score =  257 bits (657), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 124/240 (51%), Positives = 171/240 (71%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ D S K + +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVD-SGKLK-ANPMKGHVAAVSVGLLGDDVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +   A+L  AK  I +++  QK  ++N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 238


>gi|299066246|emb|CBJ37430.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum
           CMR15]
          Length = 238

 Score =  257 bits (657), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 132/239 (55%), Positives = 170/239 (71%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ +Q+R ++LTR  +++AEGS LV FGDTH+L TA++  KVP   + +  GW+T
Sbjct: 1   MRPSGRQPDQLRPVTLTRHYTRHAEGSVLVCFGDTHVLCTASVLPKVPPHKKGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGRA+RSV DLSALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTIHLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS-QVLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA+VA HD +  M     K QL+ + ++  VAA+S G++ G P++DLDY
Sbjct: 121 ADGGTRTASITGAFVAAHDAISVMR---KKGQLAGEPIRDFVAAVSVGVVDGVPVLDLDY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS+ D D N VMT +G  VEVQG+AE   F++    A+L LA   I  LI LQK  +
Sbjct: 178 PEDSSCDTDMNVVMTGAGGFVEVQGTAEGTPFTRTEMDALLGLADQGIRTLIGLQKQAL 236


>gi|91784888|ref|YP_560094.1| ribonuclease PH [Burkholderia xenovorans LB400]
 gi|122970210|sp|Q13V47|RNPH_BURXL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|91688842|gb|ABE32042.1| RNAse PH [Burkholderia xenovorans LB400]
          Length = 246

 Score =  257 bits (657), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 129/234 (55%), Positives = 169/234 (72%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGRQ +Q+R++ +TR  +K+AEGS LV+FGDT ++ TA++ E VP ++R+   GW+TA
Sbjct: 7   RPSGRQADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAESVPSFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALRSV DL  LG+R + IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   + + + S +   +VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVARLL-ATGRIESSPITD-YVAAISVGVYDGLPVLDLDYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  D D N VMT +G  VE+QG+AE   FS+D   A+L+LA D I  LI  QK
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMNALLDLASDGINTLIAKQK 238


>gi|170693638|ref|ZP_02884796.1| ribonuclease PH [Burkholderia graminis C4D1M]
 gi|170141420|gb|EDT09590.1| ribonuclease PH [Burkholderia graminis C4D1M]
          Length = 246

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 129/237 (54%), Positives = 171/237 (72%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R++ +TR  +K+AEGS LV+FGDT ++ TA++ E VP ++R+   GW+TA
Sbjct: 7   RPSGRLAHQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAETVPSFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALRSV DL  LG+R + IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   + + + S  +  +VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLL-AAGRIE-SSPISDYVAAISVGVYDGLPVLDLDYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VMT +G  VE+QG+AE   FS+D   A+L+LA D IA LI  QK+ +
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMNALLDLASDGIATLIAKQKEAL 241


>gi|89900419|ref|YP_522890.1| ribonuclease PH [Rhodoferax ferrireducens T118]
 gi|89345156|gb|ABD69359.1| RNAse PH [Rhodoferax ferrireducens T118]
          Length = 243

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 130/241 (53%), Positives = 173/241 (71%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+  R  NQ+R + + R  + +AEGS L++FG+T +L TA++EEKVP   + +  GW+T
Sbjct: 5   LRVGARAANQLRAVKIQRGYTMHAEGSVLIEFGNTKVLCTASVEEKVPAHKKGSGQGWVT 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+Q GR+QEIQR+IGRALRSV DLS LG R I +DCDV+Q
Sbjct: 65  AEYGMLPRATHSRNEREAARGKQSGRTQEIQRLIGRALRSVFDLSLLGERTIHLDCDVLQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VA  D +  +     K QLS + + HVAAIS G++ G P++DL+Y 
Sbjct: 125 ADGGTRTAAITGAFVAAQDAVTQLL-MQGKLQLSPI-RDHVAAISVGIVDGTPLLDLEYT 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT +G  VEVQG+AE A FS+    A+L LA+  I+DL+ LQK  + N
Sbjct: 183 EDSACDTDMNVVMTGAGQFVEVQGTAEGAAFSRREMDALLALAEQGISDLVALQKISLLN 242

Query: 241 E 241
           +
Sbjct: 243 K 243


>gi|261491672|ref|ZP_05988254.1| tRNA nucleotidyltransferase [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261494209|ref|ZP_05990709.1| tRNA nucleotidyltransferase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310112|gb|EEY11315.1| tRNA nucleotidyltransferase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261312687|gb|EEY13808.1| tRNA nucleotidyltransferase [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 238

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 121/239 (50%), Positives = 170/239 (71%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  NQ+REI +TR  ++YAEGS L++FG+T +L  AT+EE VP +++  + GW+T
Sbjct: 1   MRPNNRANNQVREIKITRNYTRYAEGSVLIEFGETKVLCNATVEESVPRFLKGQQQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL+D +  +   ++    +  +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALYDAMNKL--VADGTLKTNPMKGLVAAISVGIVAGEAVCDLEYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G +VEVQG+AE   FS      +L+LAK  I+ L++ Q+  ++
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHQELLTLLDLAKQGISQLVEAQRKALA 237


>gi|217420445|ref|ZP_03451950.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 576]
 gi|238561030|ref|ZP_00442682.2| tRNA nucleotidyltransferase [Burkholderia mallei GB8 horse 4]
 gi|251766543|ref|ZP_02264154.2| tRNA nucleotidyltransferase [Burkholderia mallei PRL-20]
 gi|254196137|ref|ZP_04902562.1| ribonuclease PH [Burkholderia pseudomallei S13]
 gi|254207704|ref|ZP_04914054.1| ribonuclease PH [Burkholderia mallei JHU]
 gi|121229702|gb|ABM52220.1| ribonuclease PH [Burkholderia mallei SAVP1]
 gi|147751598|gb|EDK58665.1| ribonuclease PH [Burkholderia mallei JHU]
 gi|169652881|gb|EDS85574.1| ribonuclease PH [Burkholderia pseudomallei S13]
 gi|217395857|gb|EEC35874.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 576]
 gi|238525408|gb|EEP88836.1| tRNA nucleotidyltransferase [Burkholderia mallei GB8 horse 4]
 gi|243065369|gb|EES47555.1| tRNA nucleotidyltransferase [Burkholderia mallei PRL-20]
          Length = 295

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 125/235 (53%), Positives = 173/235 (73%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R SGR+ +Q+R++ +TR  +K+AEG+ LV+FGDT ++ TA++ E+VP ++R    GW+T
Sbjct: 58  LRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLT 117

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQ
Sbjct: 118 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQ 177

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA HD +  +   + +   S +   +VAAIS G+  G P++DLDY 
Sbjct: 178 ADGGTRTASITGAFVAAHDAVTKLV-AAGRIARSPITD-YVAAISVGVFGGTPVLDLDYD 235

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  D D N VMT +G  VEVQG+AE A FS+    A+L+LA+  I +L++LQ+
Sbjct: 236 EDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQR 290


>gi|126724518|ref|ZP_01740361.1| ribonuclease PH [Rhodobacterales bacterium HTCC2150]
 gi|126705682|gb|EBA04772.1| ribonuclease PH [Rhodobacterales bacterium HTCC2150]
          Length = 235

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 125/238 (52%), Positives = 174/238 (73%), Gaps = 3/238 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ NQMR++ +   V+++AEGSCL+K GDTH+L TA+LE  VP +++N+  GW+T
Sbjct: 1   MRPSGRELNQMRDVVIETNVTRHAEGSCLIKMGDTHVLCTASLEPGVPRFLKNSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA +G Q GR+QEIQR+IGR+LR+ +D  ALG RQI IDCDVIQ
Sbjct: 61  AEYGMLPRATNTRMRREAKNG-QSGRTQEIQRLIGRSLRACIDRVALGERQITIDCDVIQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +   + + +   ++  H+AA+SCG+  G  ++DLDY 
Sbjct: 120 ADGGTRCASITGGWVALRLAVNRLMK-AGEVKTDPIMD-HIAAVSCGIYAGQCVLDLDYP 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS    D NFVMT +  +VE+QGSAE ATFS+D F  +++LA+  + +L+  QK  +
Sbjct: 178 EDSEAGTDGNFVMTGAKGMVELQGSAEGATFSRDQFNQLMDLAEKGVDELVAAQKAAV 235


>gi|83950767|ref|ZP_00959500.1| ribonuclease PH [Roseovarius nubinhibens ISM]
 gi|83838666|gb|EAP77962.1| ribonuclease PH [Roseovarius nubinhibens ISM]
          Length = 238

 Score =  256 bits (655), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 124/235 (52%), Positives = 172/235 (73%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  ++MR +S+   V+K+AEGSC+++ GDTH+L TAT+E++VP +I+ +  GW+T
Sbjct: 1   MRPSGRALDEMRPVSIETGVTKHAEGSCMIRVGDTHVLCTATIEDRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA +G+QGGR+ EIQR+IGR+LR+ VD  ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRSTTSRMRREASAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +Q +    +    S  L   V A+SCG+  G  ++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALKLAVQKLMKAGDV--TSDPLVDPVGAVSCGIYAGQLVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS   VD NF+MT SG ++E Q SAE +TF++D    +L+LA+  + +L +LQ+
Sbjct: 179 EDSEAGVDGNFIMTASGRMIEAQMSAEGSTFTRDQMTGLLDLAEKGVQELAELQR 233


>gi|209966225|ref|YP_002299140.1| ribonuclease PH [Rhodospirillum centenum SW]
 gi|209959691|gb|ACJ00328.1| ribonuclease PH [Rhodospirillum centenum SW]
          Length = 239

 Score =  256 bits (655), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 122/210 (58%), Positives = 157/210 (74%), Gaps = 2/210 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +QMR +SL   VSK+AEGSCLV+FGDTH+L TA++E++VP ++R    GW+TA
Sbjct: 3   RPSGRSLDQMRPVSLETNVSKHAEGSCLVRFGDTHVLCTASVEDRVPPFLRGQGQGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  GRQ GR+QEIQR+IGR+LR+V D+ A+G   + IDCDV+QA
Sbjct: 63  EYGMLPRATAERTDREAAKGRQTGRTQEIQRLIGRSLRAVTDVKAMGEITVKIDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITG++VAL    +H+   S  F  +Q L   VAA+SCG+  G P++DLDY E
Sbjct: 123 DGGTRTAAITGSYVALALAFRHL--TSIGFLKAQPLTDSVAAVSCGLYQGAPVLDLDYAE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATF 211
           DS+   DANFV+T  G IVE+QG+AE+  F
Sbjct: 181 DSSAQADANFVLTGKGGIVEIQGTAEKTPF 210


>gi|313199824|ref|YP_004038482.1| ribonuclease ph [Methylovorus sp. MP688]
 gi|312439140|gb|ADQ83246.1| ribonuclease PH [Methylovorus sp. MP688]
          Length = 238

 Score =  256 bits (655), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 129/234 (55%), Positives = 165/234 (70%), Gaps = 2/234 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R+ +Q+R I + R  +K+AEGS LVKFGDTH+L TA+++EKVP ++R    GW+T
Sbjct: 1   MRPSQRETHQLRPIEIIRHYTKHAEGSVLVKFGDTHVLCTASVDEKVPGFLRGKNQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R+ REA  G+Q GR+QEIQR+IGR+LR+++DL  LG R I IDCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMDREAARGKQSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VALHD +  +   +        L   VAA+S G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAYVALHDAISRL--LAQGLISESPLLDSVAAVSVGVYQGTPVLDLDYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           EDS  D D N VMT SG  VE+QG+AE   F +     ML+LA   I +L  LQ
Sbjct: 179 EDSDCDTDMNVVMTGSGGYVEIQGTAEGVPFQRADMDRMLDLAAAGIRELTTLQ 232


>gi|167644139|ref|YP_001681802.1| ribonuclease PH [Caulobacter sp. K31]
 gi|189043756|sp|B0T369|RNPH_CAUSK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|167346569|gb|ABZ69304.1| ribonuclease PH [Caulobacter sp. K31]
          Length = 242

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 124/239 (51%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  + +R ++L   V++YAEGSCL+ FG T +L TAT+EE VP W+RN   GW+T
Sbjct: 1   MRPSERAPDVLRVVTLETGVNRYAEGSCLISFGHTKVLVTATVEENVPGWMRNKGAGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA  G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATHTRGRREAALGKQSGRTQEIQRLIGRSLRAVVDLKALGERQISLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVAL   + ++         +  + G VAA+SCG+    P++DLDY 
Sbjct: 121 ADGGTRTAAITGAWVALRIAVNYL--LEEGVLKTDPIVGQVAAVSCGVFKDTPVLDLDYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D+NFV+T+ G IVE+Q + E+  F++  F  +  LA+  I +L   Q + +S
Sbjct: 179 EDSQAEADSNFVLTNVGDIVEIQATGEKRGFTRGEFEQLFALAEKGIGELFVKQLEAVS 237


>gi|17546878|ref|NP_520280.1| ribonuclease PH [Ralstonia solanacearum GMI1000]
 gi|21759400|sp|Q8XXF5|RNPH_RALSO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|17429178|emb|CAD15866.1| probable ribonuclease ph (rnase ph) (trnanucleotidyltransferase)
           protein [Ralstonia solanacearum GMI1000]
          Length = 238

 Score =  256 bits (654), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 131/239 (54%), Positives = 170/239 (71%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ +Q+R ++LTR  +++AEGS LV FGDTH+L TA++  KVP   + +  GW+T
Sbjct: 1   MRPSGRQPDQLRPVTLTRHYTRHAEGSVLVCFGDTHVLCTASVLPKVPPHKKGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGRA+RSV DLSALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTIHLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS-QVLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA+VA HD +  M     K QL+ + ++  VAA+S G++ G P++DLDY
Sbjct: 121 ADGGTRTASITGAFVAAHDAISVMR---KKGQLTGEPIRDFVAAVSVGVVDGVPVLDLDY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED++ D D N VMT +G  VEVQG+AE   F++    A+L LA   I  LI LQK  +
Sbjct: 178 PEDASCDTDMNIVMTGAGGFVEVQGTAEGTPFTRTEMDALLGLADHGIRTLIGLQKQAL 236


>gi|53720176|ref|YP_109162.1| ribonuclease PH [Burkholderia pseudomallei K96243]
 gi|53726007|ref|YP_103672.1| ribonuclease PH [Burkholderia mallei ATCC 23344]
 gi|124386333|ref|YP_001028601.1| ribonuclease PH [Burkholderia mallei NCTC 10229]
 gi|126449191|ref|YP_001081500.1| ribonuclease PH [Burkholderia mallei NCTC 10247]
 gi|126454192|ref|YP_001067258.1| ribonuclease PH [Burkholderia pseudomallei 1106a]
 gi|134280511|ref|ZP_01767222.1| ribonuclease PH [Burkholderia pseudomallei 305]
 gi|162139483|ref|YP_992156.2| ribonuclease PH [Burkholderia mallei SAVP1]
 gi|162210051|ref|YP_334425.2| ribonuclease PH [Burkholderia pseudomallei 1710b]
 gi|167739724|ref|ZP_02412498.1| ribonuclease PH [Burkholderia pseudomallei 14]
 gi|167816928|ref|ZP_02448608.1| ribonuclease PH [Burkholderia pseudomallei 91]
 gi|167825331|ref|ZP_02456802.1| ribonuclease PH [Burkholderia pseudomallei 9]
 gi|167846833|ref|ZP_02472341.1| ribonuclease PH [Burkholderia pseudomallei B7210]
 gi|167895425|ref|ZP_02482827.1| ribonuclease PH [Burkholderia pseudomallei 7894]
 gi|167912075|ref|ZP_02499166.1| ribonuclease PH [Burkholderia pseudomallei 112]
 gi|167920049|ref|ZP_02507140.1| ribonuclease PH [Burkholderia pseudomallei BCC215]
 gi|226193870|ref|ZP_03789472.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei Pakistan 9]
 gi|242317328|ref|ZP_04816344.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1106b]
 gi|254175672|ref|ZP_04882332.1| ribonuclease PH [Burkholderia mallei ATCC 10399]
 gi|254181028|ref|ZP_04887626.1| ribonuclease PH [Burkholderia pseudomallei 1655]
 gi|254191874|ref|ZP_04898377.1| ribonuclease PH [Burkholderia pseudomallei Pasteur 52237]
 gi|254202370|ref|ZP_04908733.1| ribonuclease PH [Burkholderia mallei FMH]
 gi|254259675|ref|ZP_04950729.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1710a]
 gi|254298852|ref|ZP_04966302.1| ribonuclease PH [Burkholderia pseudomallei 406e]
 gi|254356396|ref|ZP_04972672.1| ribonuclease PH [Burkholderia mallei 2002721280]
 gi|61215844|sp|Q62HZ8|RNPH_BURMA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61215857|sp|Q63RV5|RNPH_BURPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228270|sp|A3MML4|RNPH_BURM7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228271|sp|A2S9I2|RNPH_BURM9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228272|sp|A3NY37|RNPH_BURP0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|52210590|emb|CAH36573.1| ribonuclease PH [Burkholderia pseudomallei K96243]
 gi|52429430|gb|AAU50023.1| ribonuclease PH [Burkholderia mallei ATCC 23344]
 gi|124294353|gb|ABN03622.1| tRNA nucleotidyltransferase [Burkholderia mallei NCTC 10229]
 gi|126227834|gb|ABN91374.1| ribonuclease PH [Burkholderia pseudomallei 1106a]
 gi|126242061|gb|ABO05154.1| tRNA nucleotidyltransferase [Burkholderia mallei NCTC 10247]
 gi|134248518|gb|EBA48601.1| ribonuclease PH [Burkholderia pseudomallei 305]
 gi|147746617|gb|EDK53694.1| ribonuclease PH [Burkholderia mallei FMH]
 gi|148025393|gb|EDK83547.1| ribonuclease PH [Burkholderia mallei 2002721280]
 gi|157808936|gb|EDO86106.1| ribonuclease PH [Burkholderia pseudomallei 406e]
 gi|157939545|gb|EDO95215.1| ribonuclease PH [Burkholderia pseudomallei Pasteur 52237]
 gi|160696716|gb|EDP86686.1| ribonuclease PH [Burkholderia mallei ATCC 10399]
 gi|184211567|gb|EDU08610.1| ribonuclease PH [Burkholderia pseudomallei 1655]
 gi|225934175|gb|EEH30160.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei Pakistan 9]
 gi|242140567|gb|EES26969.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1106b]
 gi|254218364|gb|EET07748.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1710a]
          Length = 243

 Score =  256 bits (654), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 125/235 (53%), Positives = 173/235 (73%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R SGR+ +Q+R++ +TR  +K+AEG+ LV+FGDT ++ TA++ E+VP ++R    GW+T
Sbjct: 6   LRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLT 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQ
Sbjct: 66  AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQ 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA HD +  +   + +   S +   +VAAIS G+  G P++DLDY 
Sbjct: 126 ADGGTRTASITGAFVAAHDAVTKLV-AAGRIARSPITD-YVAAISVGVFGGTPVLDLDYD 183

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  D D N VMT +G  VEVQG+AE A FS+    A+L+LA+  I +L++LQ+
Sbjct: 184 EDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQR 238


>gi|153876824|ref|ZP_02003946.1| ribonuclease PH [Beggiatoa sp. PS]
 gi|152066712|gb|EDN66054.1| ribonuclease PH [Beggiatoa sp. PS]
          Length = 240

 Score =  256 bits (654), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 123/242 (50%), Positives = 173/242 (71%), Gaps = 2/242 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  N++R+I+ TR  + +AEGS L +FG T ++   +++E+VP +I++ K GW+T
Sbjct: 1   MRPSGRAPNELRQINFTRHYTCHAEGSVLAEFGRTKVICNVSIDERVPRFIKDKKSGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  GRQGGR+ EIQR+IGR+LR+VV+L ALG R + IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMSREASRGRQGGRTLEIQRLIGRSLRAVVNLEALGERTVNIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG+++AL D +QH+     +      + G +AA+S G+  G PI+DLDY 
Sbjct: 121 ADGGTRTAAITGSYIALVDAMQHL--LKKRLIRKNPIHGAIAAVSVGIYKGIPILDLDYN 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N +M D+   VE+QG+AE   F QD    ML+LAK+  + L++ Q  V+++
Sbjct: 179 EDSDAETDMNIIMNDAFAYVEIQGTAEGHAFRQDELQTMLSLAKEGTSQLLEKQNAVLND 238

Query: 241 EV 242
           E+
Sbjct: 239 EL 240


>gi|163732970|ref|ZP_02140414.1| ribonuclease PH [Roseobacter litoralis Och 149]
 gi|161393505|gb|EDQ17830.1| ribonuclease PH [Roseobacter litoralis Och 149]
          Length = 237

 Score =  256 bits (654), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 121/235 (51%), Positives = 171/235 (72%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ N+MR +S+    +K+AEGS L+K GDTH+L TAT+E++VP +I+ +  GW+T
Sbjct: 1   MRPSGRELNEMRAVSIETGFTKHAEGSALIKIGDTHVLCTATIEDRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++RE+ +G+QGGR+ EIQR+IGR+LR+ VD  ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATNTRMRRESTAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG W+AL   +  +    +   +S  L   VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWIALRLAVNKLMKAGDV--ISDPLVDPVAAISCGIYAGQPVMDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS   VD NF+MT +  ++EVQ SAE +TFS+D    +++LA+  + +L+  Q+
Sbjct: 179 EDSEAGVDGNFIMTGTKRLIEVQMSAEGSTFSRDQMNQLMDLAEKGVGELVTAQR 233


>gi|319761729|ref|YP_004125666.1| ribonuclease ph [Alicycliphilus denitrificans BC]
 gi|317116290|gb|ADU98778.1| ribonuclease PH [Alicycliphilus denitrificans BC]
          Length = 245

 Score =  256 bits (654), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 129/239 (53%), Positives = 170/239 (71%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R + +TRR + +AEGS L++FG+T +L TA++EEKVP   R +  GW+TA
Sbjct: 9   RSGGRAPDELRPVRITRRYTMHAEGSVLIEFGNTRVLCTASVEEKVPPHKRGSGSGWVTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR+V DL ALG R + IDCDVIQA
Sbjct: 69  EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTLQIDCDVIQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGAWVA HD +  +   + K   S +  G VAA+S G++ G P++DL+Y E
Sbjct: 129 DGGTRTAAITGAWVAAHDAVGTLL-AAGKVAASPI-TGAVAAVSVGIVQGQPLLDLEYVE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   D D N VMT +GH VEVQG+AE A FS+     +L LA+  IA+L+ LQ++ + N
Sbjct: 187 DVACDTDMNVVMTGAGHYVEVQGTAEGAAFSRREMDQLLALAEKGIAELVLLQQESLRN 245


>gi|296160047|ref|ZP_06842867.1| ribonuclease PH [Burkholderia sp. Ch1-1]
 gi|295889793|gb|EFG69591.1| ribonuclease PH [Burkholderia sp. Ch1-1]
          Length = 246

 Score =  256 bits (653), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 129/234 (55%), Positives = 168/234 (71%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGRQ +Q+R++ +TR  +K+AEGS LV+FGDT ++ TA++ E VP ++R+   GW+TA
Sbjct: 7   RPSGRQADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAESVPSFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALRSV DL  LG R + IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGVRTLHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   + + + S +   +VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVARLL-ATGRIESSPITD-YVAAISVGVYDGLPVLDLDYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  D D N VMT +G  VE+QG+AE   FS+D   A+L+LA D I  LI  QK
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMNALLDLASDGINTLIAKQK 238


>gi|121593343|ref|YP_985239.1| ribonuclease PH [Acidovorax sp. JS42]
 gi|120605423|gb|ABM41163.1| RNAse PH [Acidovorax sp. JS42]
          Length = 244

 Score =  256 bits (653), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 131/239 (54%), Positives = 168/239 (70%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R I +TR  + +AEG+ L++FG+T +L TA++EEKVP   R +  GW+TA
Sbjct: 8   RSGGRALDQLRPIRITRHYTMHAEGAVLIEFGNTRVLCTASVEEKVPPHKRGSGEGWVTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR+V DL ALG R I IDCDVIQA
Sbjct: 68  EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTIQIDCDVIQA 127

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGAWVA  D +  +   + K   S  L G VAA+S G++ G P++DL+Y E
Sbjct: 128 DGGTRTAAITGAWVAAQDAVNTLL-AAGKISASP-LTGAVAAVSVGIVQGQPLLDLEYVE 185

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   D D N VMT +GH VEVQG+AE ATFS+     +L LA+  IA+L+ LQ+  + N
Sbjct: 186 DVACDTDMNVVMTGTGHYVEVQGTAEGATFSRQEMDQLLALAEKGIAELLALQRQSLRN 244


>gi|163797073|ref|ZP_02191028.1| molecular chaperone DnaK [alpha proteobacterium BAL199]
 gi|159177589|gb|EDP62142.1| molecular chaperone DnaK [alpha proteobacterium BAL199]
          Length = 243

 Score =  256 bits (653), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 131/238 (55%), Positives = 168/238 (70%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  + +RE+ L    +K+AEGSCLV+FGDTH+L TA++E++VP W++    GW+TA
Sbjct: 8   RPSGRAVDALREVRLEPGFAKHAEGSCLVRFGDTHVLCTASVEDRVPPWLKGGGKGWVTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LRSV DL ALG RQI +DCDVIQA
Sbjct: 68  EYGMLPRSTHTRTDREAARGKQSGRTQEIQRLIGRSLRSVTDLVALGERQIRVDCDVIQA 127

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITG+WVALH  +  +        L   L   VAAISCG+  G P++DLDY E
Sbjct: 128 DGGTRTAAITGSWVALHQAMSTLLRFGAVKSLP--LTDKVAAISCGIYKGQPVLDLDYAE 185

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  + DANFV+T  G IVE+Q +AE   F +  F  +L LA+  I +L  LQ++ ++
Sbjct: 186 DSNCETDANFVLTGRGGIVEIQATAEAEPFEEAAFHELLRLARKGIGELAVLQEEAVA 243


>gi|304320412|ref|YP_003854055.1| ribonuclease PH [Parvularcula bermudensis HTCC2503]
 gi|303299314|gb|ADM08913.1| ribonuclease PH [Parvularcula bermudensis HTCC2503]
          Length = 234

 Score =  255 bits (652), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 128/237 (54%), Positives = 167/237 (70%), Gaps = 3/237 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  N+MR+++    V++YAEGSCLV+FG+TH+L TA+ EE VP W++N + GW+T
Sbjct: 1   MRPSGRAFNEMRDVTFELGVNRYAEGSCLVRFGNTHVLCTASFEENVPPWLKNQRRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE   G   GR+QEIQR+IGR+LR+VVDL+ALG RQI +DCDV+Q
Sbjct: 61  AEYSMLPRATHTRGRRERDKG-PSGRTQEIQRLIGRSLRAVVDLNALGERQIQVDCDVLQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +VAL   +      S     +  L   VAAISCG+    P+VDLDY 
Sbjct: 120 ADGGTRTASITGGYVALKQAIDWA--LSAGVLTTSPLTDSVAAISCGLYNRAPVVDLDYD 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDST   DANFV T +G IVE+Q +AE   F+ D F A+++LAK    +L + QK +
Sbjct: 178 EDSTAQADANFVFTGTGGIVEIQATAEGDPFADDEFAALVSLAKAACQELSEKQKSL 234


>gi|76580232|gb|ABA49707.1| ribonuclease PH [Burkholderia pseudomallei 1710b]
          Length = 622

 Score =  255 bits (652), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 125/238 (52%), Positives = 174/238 (73%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R SGR+ +Q+R++ +TR  +K+AEG+ LV+FGDT ++ TA++ E+VP ++R    GW+T
Sbjct: 385 LRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLT 444

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQ
Sbjct: 445 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQ 504

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA HD +  +   + +   S +   +VAAIS G+  G P++DLDY 
Sbjct: 505 ADGGTRTASITGAFVAAHDAVTKLV-AAGRIARSPITD-YVAAISVGVFGGTPVLDLDYD 562

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  D D N VMT +G  VEVQG+AE A FS+    A+L+LA+  I +L++LQ+  +
Sbjct: 563 EDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAAL 620


>gi|330826509|ref|YP_004389812.1| ribonuclease PH [Alicycliphilus denitrificans K601]
 gi|329311881|gb|AEB86296.1| Ribonuclease PH [Alicycliphilus denitrificans K601]
          Length = 245

 Score =  255 bits (652), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 129/239 (53%), Positives = 170/239 (71%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R + +TRR + +AEGS L++FG+T +L TA++EEKVP   R +  GW+TA
Sbjct: 9   RSGGRAPDELRPVRITRRYTMHAEGSVLIEFGNTRVLCTASVEEKVPPHKRGSGSGWVTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR+V DL ALG R + IDCDVIQA
Sbjct: 69  EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTLQIDCDVIQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGAWVA HD +  +   + K   S +  G VAA+S G++ G P++DL+Y E
Sbjct: 129 DGGTRTAAITGAWVAAHDAVGTLL-AAGKVAASPI-TGAVAAVSVGIVQGQPLLDLEYVE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   D D N VMT +GH VEVQG+AE A FS+     +L LA+  IA+L+ LQ++ + N
Sbjct: 187 DVACDTDMNVVMTGTGHYVEVQGTAEGAAFSRREMDQLLALAEKGIAELMLLQQESLRN 245


>gi|153800847|ref|ZP_01955433.1| ribonuclease PH [Vibrio cholerae MZO-3]
 gi|124123678|gb|EAY42421.1| ribonuclease PH [Vibrio cholerae MZO-3]
          Length = 257

 Score =  255 bits (652), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 125/236 (52%), Positives = 167/236 (70%), Gaps = 4/236 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 20  MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 80  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA VAL D   H+     K QL +  +KGHVAA+S G+L G  + DL+Y
Sbjct: 140 ADGGTRTASITGASVALADAFTHL---IAKGQLKKNPMKGHVAAVSVGILGGDVLCDLEY 196

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK
Sbjct: 197 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 252


>gi|254487308|ref|ZP_05100513.1| ribonuclease PH [Roseobacter sp. GAI101]
 gi|214044177|gb|EEB84815.1| ribonuclease PH [Roseobacter sp. GAI101]
          Length = 237

 Score =  255 bits (651), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 122/237 (51%), Positives = 174/237 (73%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ ++MR +S+    +K+AEGS L+K G TH+L TAT+E++VP +I+ +  GW+T
Sbjct: 1   MRPSGRKLDEMRAVSVDTDFTKHAEGSALIKMGGTHVLCTATIEDRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA  G+QGGR+ EIQR+IGRALR+ VD SALG RQI IDCDV+Q
Sbjct: 61  AEYGMLPRATNTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRSALGERQITIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG W+AL   +  +    +   ++  L   VAAISCG+  G  ++DLDY 
Sbjct: 121 ADGGTRCASITGGWIALKLAVNKLMKAGD--VVNDPLADPVAAISCGIYAGQSVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS   VD NF+MT +G ++E+Q SAE +T+S+D    +++LA+  +++L+++QK V
Sbjct: 179 EDSEAGVDGNFIMTGTGRLIEIQMSAEGSTYSRDQMNQLMDLAEKGVSELVEIQKAV 235


>gi|91787235|ref|YP_548187.1| ribonuclease PH [Polaromonas sp. JS666]
 gi|91696460|gb|ABE43289.1| RNAse PH [Polaromonas sp. JS666]
          Length = 243

 Score =  255 bits (651), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 128/241 (53%), Positives = 171/241 (70%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+  R  + +R + +TR  + YAEGS L++FG T +L TA++EEKVP   + +  GW+T
Sbjct: 5   VRVDARAADALRPVRITRHYTAYAEGSVLIEFGGTKVLCTASVEEKVPGHKKGSGEGWVT 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR++RSV DL  LG R I +DCDVIQ
Sbjct: 65  AEYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSMRSVFDLKKLGERTIYLDCDVIQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA+ D +  +     K Q + +L  HVAAIS G++ G P++DL+Y 
Sbjct: 125 ADGGTRTASITGAFVAVQDAVNQLL-ALGKLQETPILD-HVAAISVGIVQGTPLLDLEYT 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT +G+ VEVQG+AE A FS+    A+L LA+  IA+L+ LQK  +SN
Sbjct: 183 EDSACDTDMNVVMTGAGNYVEVQGTAEGAAFSRKEMDALLVLAEKGIAELVGLQKKSLSN 242

Query: 241 E 241
           E
Sbjct: 243 E 243


>gi|205354664|ref|YP_002228465.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|226736934|sp|B5RG80|RNPH_SALG2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|205274445|emb|CAR39477.1| RNase PH [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|326629803|gb|EGE36146.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 238

 Score =  255 bits (651), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 126/240 (52%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   +N    +  +KG VAA+S G++ G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   FS +    +L+LA+  I  ++  QK  + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLSLARGGIESIVATQKAALEN 238


>gi|309812199|ref|ZP_07705957.1| tRNA nucleotidyltransferase [Dermacoccus sp. Ellin185]
 gi|308433886|gb|EFP57760.1| tRNA nucleotidyltransferase [Dermacoccus sp. Ellin185]
          Length = 255

 Score =  254 bits (650), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 126/240 (52%), Positives = 166/240 (69%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+RE+ +TR    +AEGSCLV+FG T +L  A+  E VP W++    GW+T+
Sbjct: 10  RHDGRTPDQLREVRITRNWLDHAEGSCLVEFGRTRVLCAASFTEGVPRWLKGQGTGWVTS 69

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  REA  G+ GGR+ EI R+IGR+LR+V+D  ALG   I+IDCDV+QA
Sbjct: 70  EYEMLPRSTNTRSDREARKGKVGGRTHEISRLIGRSLRAVIDTKALGENTIVIDCDVLQA 129

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +   +      + ++ L   VAAIS G++ G P++DLDY E
Sbjct: 130 DGGTRTASITGAYVALADAIADAQARGLIAKKAKPLTDSVAAISVGIVAGQPVLDLDYPE 189

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DST + D N VMT SG IVEVQG+AE A FS+D   A+L+LA D IADL   Q+D ++ +
Sbjct: 190 DSTAETDMNVVMTGSGGIVEVQGTAEGAPFSRDELNALLDLAADGIADLTTKQRDALAAD 249


>gi|254512351|ref|ZP_05124418.1| ribonuclease PH [Rhodobacteraceae bacterium KLH11]
 gi|221536062|gb|EEE39050.1| ribonuclease PH [Rhodobacteraceae bacterium KLH11]
          Length = 237

 Score =  254 bits (649), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 122/224 (54%), Positives = 164/224 (73%), Gaps = 2/224 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  N+MR +S+    +K+AEGSCL+K GDTH+L TAT+E++VP +I+ +  GW+T
Sbjct: 1   MRPSGRDLNEMRAVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA SG+QGGR+ EIQR+IGRALR+ VD  ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +    +   +S  L   VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDV--ISDPLVDPVAAVSCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           EDS   VD NF+MT +G ++EVQ SAE + FS+     +++LA+
Sbjct: 179 EDSEAGVDGNFIMTGTGKLIEVQMSAEGSVFSRTQMDQLMDLAE 222


>gi|222110072|ref|YP_002552336.1| ribonuclease ph [Acidovorax ebreus TPSY]
 gi|221729516|gb|ACM32336.1| ribonuclease PH [Acidovorax ebreus TPSY]
          Length = 244

 Score =  254 bits (649), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 130/239 (54%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R I +TR  + +AEG+ L++FG+T +L TA++EEKVP   R +  GW+TA
Sbjct: 8   RSGGRALDQLRPIRITRHYTMHAEGAVLIEFGNTRVLCTASVEEKVPPHKRGSGEGWVTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR+V DL ALG R I IDCDVIQA
Sbjct: 68  EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTIQIDCDVIQA 127

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGAWVA  D +  +   + K   S  L G VAA+S G++ G P++DL+Y E
Sbjct: 128 DGGTRTAAITGAWVAAQDAVNTLL-AAGKISASP-LTGAVAAVSVGIVQGQPLLDLEYVE 185

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   D D N VMT +GH VEVQG+AE A FS+     +L LA+  IA+L+ LQ+  + N
Sbjct: 186 DVACDTDMNVVMTGTGHYVEVQGTAEGAAFSRQEMDQLLALAEKGIAELVALQRQSLRN 244


>gi|300113393|ref|YP_003759968.1| ribonuclease PH [Nitrosococcus watsonii C-113]
 gi|299539330|gb|ADJ27647.1| ribonuclease PH [Nitrosococcus watsonii C-113]
          Length = 239

 Score =  254 bits (648), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 170/239 (71%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +++R I  TR  ++YAEGS LV+FG+T ++  A++E+++P +++ T  GWIT
Sbjct: 1   MRPSGRAPHELRPIHFTRHYTQYAEGSVLVEFGNTRVICNASVEDRIPRFLKGTGRGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST NR+ REA  GRQGGR+ EIQR+IGRALR+VVDL+ALG   + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHNRMGREAAQGRQGGRTLEIQRLIGRALRAVVDLAALGEVTVTLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VAL D + +      +      + G +A++S G+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGSYVALVDAIHN--RLKKRAIAHSPIHGQIASVSVGIYEGTPVLDLDYR 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST + D N VM ++G  +E+QG+AE   F  +   AML LAK+ I  L+  Q +V++
Sbjct: 179 EDSTAETDMNVVMNEAGAFIEIQGTAEGHAFRMNELQAMLELAKNGITTLLAQQTEVLA 237


>gi|77165901|ref|YP_344426.1| ribonuclease PH [Nitrosococcus oceani ATCC 19707]
 gi|123593634|sp|Q3J8F0|RNPH_NITOC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|76884215|gb|ABA58896.1| RNAse PH [Nitrosococcus oceani ATCC 19707]
          Length = 239

 Score =  253 bits (647), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 123/239 (51%), Positives = 169/239 (70%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +++R I  TR  ++YAEGS LV+FG+T ++  A++E+++P +++ T  GWIT
Sbjct: 1   MRPSGRAPHELRPIHFTRHYTRYAEGSVLVEFGNTRVICNASVEDRIPRFLKGTGRGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST NR+ REA  GRQGGR+ EIQR IGRALR+VVDL+ALG   + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHNRMGREAAQGRQGGRTLEIQRFIGRALRAVVDLAALGEVTVTLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VAL D + +      +      + G +A+IS G+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGSYVALVDAINNR--LKKRIITHSPIHGQLASISVGIYEGTPVLDLDYR 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST + D N VM ++G  +E+QG+AE   F  +   AML+LAK  I  L+  Q +V++
Sbjct: 179 EDSTAETDMNVVMNEAGAFIEIQGTAEGHAFRMNELQAMLDLAKSGINTLLAQQTEVLA 237


>gi|82701201|ref|YP_410767.1| ribonuclease PH [Nitrosospira multiformis ATCC 25196]
 gi|123545290|sp|Q2YCZ6|RNPH_NITMU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|82409266|gb|ABB73375.1| RNAse PH [Nitrosospira multiformis ATCC 25196]
          Length = 238

 Score =  253 bits (647), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 124/239 (51%), Positives = 174/239 (72%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R+ +Q+R + +TR  +++AEGS L++ GDT ++ TA+++EKVP+++R    GW+T
Sbjct: 1   MRPSKRRPDQLRSVQITRHYTRHAEGSVLIECGDTRIICTASVDEKVPLFLRGKGQGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R++REA  G+Q GR+ EIQR+IGRALRSV+DL+ LG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTNERMQREAAKGKQSGRTMEIQRLIGRALRSVMDLTKLGERTIQVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA+HD +  +     +   +  + GHVAA+S G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAFVAVHDAIGTL--LRKQAIEATPITGHVAAVSVGVYEGVPMLDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMTD   +VE+QG+AE   FS++    ML+LA+  I +LI  QK+ ++
Sbjct: 179 EDSRCDTDMNIVMTDDLGLVEMQGTAEGMPFSRNDLDMMLDLAQQGIRELIAAQKNALN 237


>gi|254482749|ref|ZP_05095987.1| ribonuclease PH [marine gamma proteobacterium HTCC2148]
 gi|214037108|gb|EEB77777.1| ribonuclease PH [marine gamma proteobacterium HTCC2148]
          Length = 240

 Score =  253 bits (647), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 127/238 (53%), Positives = 169/238 (71%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR   Q+R+IS+TR  + +AEGS LV FG T ++ TA++EE VP ++R    GW+TA
Sbjct: 3   RPSGRTPEQLRDISITRNFTCHAEGSVLVSFGKTKVICTASVEEGVPRFLRGKGSGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG+R+ REA  G+QGGR+ EIQR+IGR+LR+ VDL  LG   I IDCDVIQA
Sbjct: 63  EYGMLPRSTGSRMGREASRGKQGGRTVEIQRLIGRSLRAAVDLKKLGENTINIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D + +++    K   +  L   +A++S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGALVALVDAINYLQ--RKKIINTDPLLEMMASVSVGIYQGVPVLDLDYPE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N +M +SG  +EVQG+AE ATF++D   AML+LA   I +LI+ QK  ++
Sbjct: 181 DSAADTDMNVIMGESGGFIEVQGTAEGATFARDELNAMLDLASAGILELIEKQKAALA 238


>gi|292490867|ref|YP_003526306.1| ribonuclease PH [Nitrosococcus halophilus Nc4]
 gi|291579462|gb|ADE13919.1| ribonuclease PH [Nitrosococcus halophilus Nc4]
          Length = 239

 Score =  253 bits (646), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 123/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +++R I LTR  +KYAEGS LV+FGDT ++ TA++E++VP +++    GW+T
Sbjct: 1   MRPSGRAPDELRPIRLTRHYTKYAEGSVLVEFGDTRVICTASVEDRVPRFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  GRQGGR+ EIQR+IGR+LR++VDLSALG   + IDCDVIQ
Sbjct: 61  AEYGMLPRSTNIRMGREAAQGRQGGRTMEIQRLIGRSLRAIVDLSALGEITVTIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D +  +     +      + G VA++S G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAYVALVDAVGSL--LKKRVIAHSPIHGQVASVSVGICEGRPVLDLDYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDST + D N +M ++G  +E+QG+AE   F  +   AML LAK  I  L+  Q + ++ 
Sbjct: 179 EDSTAETDMNVIMNEAGGFIEIQGTAEGHAFRMNELQAMLELAKSGIGTLLAKQTEALAK 238


>gi|241767033|ref|ZP_04764818.1| ribonuclease PH [Acidovorax delafieldii 2AN]
 gi|241362436|gb|EER58380.1| ribonuclease PH [Acidovorax delafieldii 2AN]
          Length = 243

 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 126/234 (53%), Positives = 166/234 (70%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R + +TRR + +AEGS L++FG+T +L TA++E+KVP   R T  GW+T+
Sbjct: 6   RSGGRAADQLRPVRITRRYTMHAEGSVLIEFGNTQVLCTASVEDKVPPHQRGTGEGWVTS 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V DL  LG R I +DCDVIQA
Sbjct: 66  EYGMLPRATHKRSDREAAKGKQSGRTQEIQRLIGRSLRAVFDLRLLGERTIQLDCDVIQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGAWVA  D +  +   S K   S + +G VAAIS G++ G P++DL+Y E
Sbjct: 126 DGGTRTAAITGAWVAAQDAVNQLL-ASGKITASPI-RGSVAAISVGIVQGTPLLDLEYAE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D   D D N VMT +GH VEVQG+AE A F++     +L LA+  IA+L+ LQ+
Sbjct: 184 DVGCDTDMNVVMTGAGHFVEVQGTAEGAAFTRAEMDQLLGLAEKGIAELVALQQ 237


>gi|113866973|ref|YP_725462.1| ribonuclease PH [Ralstonia eutropha H16]
 gi|123134290|sp|Q0KD27|RNPH_RALEH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|113525749|emb|CAJ92094.1| Ribonuclease PH [Ralstonia eutropha H16]
          Length = 239

 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 128/238 (53%), Positives = 167/238 (70%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  + +R ISLTR  +++AEGS L  FGDT +L TA++  KVP   + +  GW+T
Sbjct: 1   MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHKKGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRA+RSV DL+ALG   + +DCDV+Q
Sbjct: 61  AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTVHLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VA HD +  M    +    +  ++ HVAA+S GM+ G P++DLDY 
Sbjct: 121 ADGGTRTAAITGAFVAAHDAVSTM--LRDGLIAASPIRDHVAAVSVGMVDGVPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS+ D D N VMT SG  VEVQG+AE A FS+    AM  LA+  IA L++ Q++ +
Sbjct: 179 EDSSCDTDMNVVMTGSGGFVEVQGTAEGAPFSRADLDAMTRLAEAGIARLVQHQREAL 236


>gi|90415478|ref|ZP_01223412.1| ribonuclease PH [marine gamma proteobacterium HTCC2207]
 gi|90332801|gb|EAS47971.1| ribonuclease PH [marine gamma proteobacterium HTCC2207]
          Length = 239

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 123/234 (52%), Positives = 166/234 (70%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+  Q+R + +TR  + +AEGS L++FG T ++ TA++   VP ++R    GW+TA
Sbjct: 3   RPSGRRPEQLRPVKITRDFTCHAEGSVLIEFGKTKVICTASVTPGVPRFLRGKGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG+R+ REA  G+QGGR+QEIQR+IGR+LR+ VD+  LG   I IDCDVIQA
Sbjct: 63  EYGMLPRSTGSRMDREAARGKQGGRTQEIQRLIGRSLRAAVDMKKLGEHTINIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VA+ D ++H++    K  L   L   +A++S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGACVAMVDAIRHLQ--RKKAILDDPLLCMIASVSVGIYKGTPVLDLDYPE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  + D N VM   G  +EVQG+AE A FS++   AML LAK  IADL+++QK
Sbjct: 181 DSKAETDMNVVMNSEGGFIEVQGTAEAAPFSEEELSAMLGLAKQGIADLVRVQK 234


>gi|153830706|ref|ZP_01983373.1| ribonuclease PH [Vibrio cholerae 623-39]
 gi|148873826|gb|EDL71961.1| ribonuclease PH [Vibrio cholerae 623-39]
          Length = 257

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/236 (52%), Positives = 166/236 (70%), Gaps = 4/236 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 20  MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 80  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA VAL D   H+     K QL +  +KGHVAA+S G+L G  + DL+Y
Sbjct: 140 ADGGTRTASITGASVALADAFTHL---IAKGQLKKNPMKGHVAAVSVGILGGDVLCDLEY 196

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            EDS  D D N VMT+ G ++E+QG+AE   F  +    +L +AK  IAD++ +QK
Sbjct: 197 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFCHEQLLELLAVAKKGIADIVAVQK 252


>gi|83719437|ref|YP_442125.1| ribonuclease PH [Burkholderia thailandensis E264]
 gi|167580996|ref|ZP_02373870.1| ribonuclease PH [Burkholderia thailandensis TXDOH]
 gi|167619073|ref|ZP_02387704.1| ribonuclease PH [Burkholderia thailandensis Bt4]
 gi|257138313|ref|ZP_05586575.1| ribonuclease PH [Burkholderia thailandensis E264]
 gi|123537265|sp|Q2SY74|RNPH_BURTA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|83653262|gb|ABC37325.1| ribonuclease PH [Burkholderia thailandensis E264]
          Length = 243

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 125/234 (53%), Positives = 171/234 (73%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ +Q+R++ +TR  +K+AEGS LV+FG+T ++ TA++ E+VP ++R    GW+TA
Sbjct: 7   RPSGRRADQLRDVRITRHYTKHAEGSVLVEFGETKVICTASVVERVPEFLRERGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   + K   S +   +VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVTKLV-AAGKIARSPITD-YVAAISVGVFGGAPVLDLDYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  D D N VMT +G  VEVQG+AE   FS+    A+L+LA+  I +L++LQ+
Sbjct: 185 DSACDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQAGIGELVRLQR 238


>gi|88811938|ref|ZP_01127191.1| ribonuclease PH [Nitrococcus mobilis Nb-231]
 gi|88790822|gb|EAR21936.1| ribonuclease PH [Nitrococcus mobilis Nb-231]
          Length = 238

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/238 (52%), Positives = 167/238 (70%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  ++MR + +TR  +K+AEGS LV+FGDT +L  A++EE+VP W+RN+  GWIT
Sbjct: 1   MRPSGRHNHEMRAVRITRGFTKHAEGSALVEFGDTKILCNASVEERVPPWLRNSGRGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  REAV GRQ GR+ EIQR+IGR+LR+ +DL ALG R+IIIDCDV+Q
Sbjct: 61  AEYAMLPRATQSRNDREAVRGRQQGRTVEIQRLIGRSLRAAIDLQALGERRIIIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG +VAL D LQ +            L GHVAA+S G+  G  ++DLDY 
Sbjct: 121 ADGGTRTAAITGGYVALADALQSL--IKKGLLKRPPLFGHVAAVSVGIYRGKVVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           ED+  + D N VM + G ++E+QG+AE   F +     M++LA++    LI+ Q+  +
Sbjct: 179 EDAEAETDMNIVMNEVGALIEIQGTAEGHAFRRVELGQMIDLAEEGTRSLIEAQRQAL 236


>gi|148981863|ref|ZP_01816548.1| ribonuclease PH [Vibrionales bacterium SWAT-3]
 gi|145960714|gb|EDK26055.1| ribonuclease PH [Vibrionales bacterium SWAT-3]
          Length = 238

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 122/240 (50%), Positives = 169/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEIMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D ++ + D S K +    +KGHVAA+S G++    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAIKSLID-SGKLK-KNPMKGHVAAVSVGIVGAEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +    +L LA   IAD+++ QK  +++
Sbjct: 179 EDSAADTDMNVVMTEDGKMIEIQGTAEGEPFSHEELMKLLALANKGIADIVEAQKAALAD 238


>gi|229524838|ref|ZP_04414243.1| ribonuclease PH [Vibrio cholerae bv. albensis VL426]
 gi|229338419|gb|EEO03436.1| ribonuclease PH [Vibrio cholerae bv. albensis VL426]
          Length = 257

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/236 (52%), Positives = 166/236 (70%), Gaps = 4/236 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 20  MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 80  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA VAL D   H+     K QL +  +KGHVAA+S G+L    + DL+Y
Sbjct: 140 ADGGTRTASITGASVALADAFAHL---MAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 196

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK
Sbjct: 197 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 252


>gi|262190382|ref|ZP_06048643.1| ribonuclease PH [Vibrio cholerae CT 5369-93]
 gi|262033743|gb|EEY52222.1| ribonuclease PH [Vibrio cholerae CT 5369-93]
          Length = 238

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/236 (52%), Positives = 166/236 (70%), Gaps = 4/236 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 1   MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA VAL D   H+     K QL +  +KGHVAA+S G+L    + DL+Y
Sbjct: 121 ADGGTRTASITGASVALADAFAHL---IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK
Sbjct: 178 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLTVAKKGIADIVAVQK 233


>gi|307730700|ref|YP_003907924.1| ribonuclease PH [Burkholderia sp. CCGE1003]
 gi|307585235|gb|ADN58633.1| ribonuclease PH [Burkholderia sp. CCGE1003]
          Length = 246

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 128/237 (54%), Positives = 169/237 (71%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R++ +TR  +K+AEGS LV+FGDT ++ TA++ E VP ++R+   GW+TA
Sbjct: 7   RPSGRLADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAETVPSFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALRSV DL  LG+R + IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   +   + S +    VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLL-AAGHIEGSPI-SDFVAAISVGIYDGVPVLDLDYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VMT +G  VE+QG+AE   FS++   A+L+LA D IA LI  QK+ +
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSREEMNALLDLASDGIATLIARQKEAL 241


>gi|258625880|ref|ZP_05720755.1| ribonuclease PH [Vibrio mimicus VM603]
 gi|258581844|gb|EEW06718.1| ribonuclease PH [Vibrio mimicus VM603]
          Length = 238

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/236 (52%), Positives = 166/236 (70%), Gaps = 4/236 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 1   MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA VAL D   H+     K QL +  +KGHVAA+S G+L    + DL+Y
Sbjct: 121 ADGGTRTASITGASVALADAFAHL---MAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK
Sbjct: 178 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 233


>gi|121997764|ref|YP_001002551.1| ribonuclease PH [Halorhodospira halophila SL1]
 gi|166228286|sp|A1WVN7|RNPH_HALHL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|121589169|gb|ABM61749.1| RNAse PH [Halorhodospira halophila SL1]
          Length = 238

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 120/240 (50%), Positives = 169/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +++R IS+ R+ +K+AEGS L+ FGDT +L TA++E +VP W+R    GW+T
Sbjct: 1   MRPSGRRADELRPISIQRQFTKHAEGSVLIGFGDTRVLCTASVEARVPPWLRGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+ EIQR+IGR+LR+ VDL ALG R +++DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRSDREAARGKQQGRTVEIQRLIGRSLRAAVDLQALGERSVVVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D L+ +     +   +  L G VA++S G+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGAFVALTDALEGL--VRQRALPASPLHGQVASVSVGVYRGEPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   + D N VM D+G  +E+QG+AE   F +D    ML LA+  + +L++ Q++ ++ 
Sbjct: 179 EDGEAETDMNVVMNDAGAFIELQGTAEGHAFRRDELDRMLALAEKGVGELLQHQQEALAT 238


>gi|296533566|ref|ZP_06896135.1| tRNA nucleotidyltransferase [Roseomonas cervicalis ATCC 49957]
 gi|296266103|gb|EFH12159.1| tRNA nucleotidyltransferase [Roseomonas cervicalis ATCC 49957]
          Length = 239

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 127/239 (53%), Positives = 164/239 (68%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  + +R +SL   V+++AEGSCL++ G T +L TA++E +VP ++R    GW+T
Sbjct: 1   MRPSGRAADALRSVSLQPGVARHAEGSCLIRMGVTEVLCTASVEGRVPPFLRGKGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVD  A+G   I++DCDVI 
Sbjct: 61  AEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVVDRKAMGEVSIVLDCDVIT 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS-QVLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTR AAITGAWVALH  L+H   C  K  +S   L+  VAAISCG+  G PI+DL+Y
Sbjct: 121 ADGGTRCAAITGAWVALHQALEH---CVTKNLISANPLRDQVAAISCGLWEGEPILDLEY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS    DANFV+T  G IVEVQG+AE   FS      ++ LA+   A+L   Q+  I
Sbjct: 178 VEDSAAQADANFVLTGKGGIVEVQGTAEGEPFSDAQLLGLMALARKGTAELFAAQRRAI 236


>gi|261213164|ref|ZP_05927447.1| ribonuclease PH [Vibrio sp. RC341]
 gi|260837582|gb|EEX64276.1| ribonuclease PH [Vibrio sp. RC341]
          Length = 238

 Score =  252 bits (644), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/236 (52%), Positives = 166/236 (70%), Gaps = 4/236 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 1   MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA VAL D   H+     K QL +  +KGHVAA+S G+L    + DL+Y
Sbjct: 121 ADGGTRTASITGASVALADAFAHL---MAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK
Sbjct: 178 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 233


>gi|194289073|ref|YP_002004980.1| ribonuclease ph [Cupriavidus taiwanensis LMG 19424]
 gi|226736900|sp|B3R3N0|RNPH_CUPTR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|193222908|emb|CAQ68913.1| RNase PH [Cupriavidus taiwanensis LMG 19424]
          Length = 239

 Score =  252 bits (644), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 128/238 (53%), Positives = 166/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  + +R ISLTR  +++AEGS L  FGDT +L TA++  KVP   + +  GW+T
Sbjct: 1   MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHKKGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRA+RSV DL+ALG   + +DCDV+Q
Sbjct: 61  AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTLHLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VA HD +  M    +    +  ++ HVAA+S GM+ G P++DLDY 
Sbjct: 121 ADGGTRTAAITGAFVAAHDAVATM--LRDGLIAASPIRDHVAAVSVGMVDGVPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  D D N VMT SG  VEVQG+AE A FS+    AM  LA+  IA L++ Q++ +
Sbjct: 179 EDSNCDTDMNVVMTGSGGFVEVQGTAEGAPFSRADLDAMTRLAEAGIARLVQYQREAL 236


>gi|326565518|gb|EGE15689.1| ribonuclease PH [Moraxella catarrhalis 12P80B1]
          Length = 238

 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 128/239 (53%), Positives = 172/239 (71%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + RQ N++R I   R+ +K+AEGS LV FGDT +L TA++E  VP W++    GW+T
Sbjct: 1   MRSNNRQNNELRPIYFIRQYTKHAEGSVLVCFGDTKVLCTASIEAGVPRWLKGQGKGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R +REA  G+Q GR+QEIQR+IGR+LR+++DLS LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRATGTRTQREAARGKQSGRTQEIQRLIGRSLRAMLDLSKLGENTIYIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+I+GA VAL D L+H++    + +L+Q  L G VAA+S G+  G  ++DLDY
Sbjct: 121 ADGGTRTASISGAAVALIDALEHLQ---RRKKLTQDPLLGLVAAVSVGVNQGRVLLDLDY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDST D D N VMT +G  +E+QG+AE   F++    AML+LA+  I  +I+ QK V+
Sbjct: 178 AEDSTCDTDLNVVMTQAGGFIEIQGTAEEKPFTRAEANAMLDLAELGIGQIIEAQKQVL 236


>gi|262273502|ref|ZP_06051316.1| ribonuclease PH [Grimontia hollisae CIP 101886]
 gi|262222480|gb|EEY73791.1| ribonuclease PH [Grimontia hollisae CIP 101886]
          Length = 238

 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 124/235 (52%), Positives = 163/235 (69%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+  Q+R +++TR  + +AEGS LV FGDT ++ TA++EE VP +++    GWIT
Sbjct: 1   MRPSGREVGQIRPVTITRHFTAHAEGSVLVAFGDTKVICTASVEEGVPRFLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNRREAANGKQGGRTMEIQRLIARSLRAAVDLEKLGDFTITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   S        +KGHVAA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTASITGASVALADALNKL--VSEGKLKENPMKGHVAAVSVGIFEGTPICDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  D D N VM + G ++EVQG+AE   F+ +   AML+LA   I D++ +QK
Sbjct: 179 EDSAADTDMNVVMLEDGRMIEVQGTAEAEPFTAEELNAMLSLAAKGIQDIVAIQK 233


>gi|153216091|ref|ZP_01950265.1| ribonuclease PH [Vibrio cholerae 1587]
 gi|153819951|ref|ZP_01972618.1| ribonuclease PH [Vibrio cholerae NCTC 8457]
 gi|153821600|ref|ZP_01974267.1| ribonuclease PH [Vibrio cholerae B33]
 gi|153825939|ref|ZP_01978606.1| ribonuclease PH [Vibrio cholerae MZO-2]
 gi|227080431|ref|YP_002808982.1| ribonuclease PH [Vibrio cholerae M66-2]
 gi|229506989|ref|ZP_04396497.1| ribonuclease PH [Vibrio cholerae BX 330286]
 gi|229509359|ref|ZP_04398842.1| ribonuclease PH [Vibrio cholerae B33]
 gi|229512476|ref|ZP_04401948.1| ribonuclease PH [Vibrio cholerae TMA 21]
 gi|229516306|ref|ZP_04405754.1| ribonuclease PH [Vibrio cholerae RC9]
 gi|229527287|ref|ZP_04416680.1| ribonuclease PH [Vibrio cholerae 12129(1)]
 gi|229606497|ref|YP_002877145.1| ribonuclease PH [Vibrio cholerae MJ-1236]
 gi|254291599|ref|ZP_04962388.1| ribonuclease PH [Vibrio cholerae AM-19226]
 gi|297581663|ref|ZP_06943585.1| ribonuclease PH [Vibrio cholerae RC385]
 gi|298500852|ref|ZP_07010654.1| ribonuclease PH [Vibrio cholerae MAK 757]
 gi|9654617|gb|AAF93386.1| ribonuclease PH [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|124114467|gb|EAY33287.1| ribonuclease PH [Vibrio cholerae 1587]
 gi|126509515|gb|EAZ72109.1| ribonuclease PH [Vibrio cholerae NCTC 8457]
 gi|126520887|gb|EAZ78110.1| ribonuclease PH [Vibrio cholerae B33]
 gi|149740347|gb|EDM54483.1| ribonuclease PH [Vibrio cholerae MZO-2]
 gi|150422456|gb|EDN14414.1| ribonuclease PH [Vibrio cholerae AM-19226]
 gi|227008319|gb|ACP04531.1| ribonuclease PH [Vibrio cholerae M66-2]
 gi|229335295|gb|EEO00779.1| ribonuclease PH [Vibrio cholerae 12129(1)]
 gi|229346732|gb|EEO11702.1| ribonuclease PH [Vibrio cholerae RC9]
 gi|229350475|gb|EEO15423.1| ribonuclease PH [Vibrio cholerae TMA 21]
 gi|229353674|gb|EEO18611.1| ribonuclease PH [Vibrio cholerae B33]
 gi|229356094|gb|EEO21013.1| ribonuclease PH [Vibrio cholerae BX 330286]
 gi|229369152|gb|ACQ59575.1| ribonuclease PH [Vibrio cholerae MJ-1236]
 gi|297534070|gb|EFH72909.1| ribonuclease PH [Vibrio cholerae RC385]
 gi|297540356|gb|EFH76415.1| ribonuclease PH [Vibrio cholerae MAK 757]
          Length = 257

 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 124/236 (52%), Positives = 166/236 (70%), Gaps = 4/236 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 20  MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 80  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA VAL D   H+     K QL +  +KGHVAA+S G+L    + DL+Y
Sbjct: 140 ADGGTRTASITGASVALADAFAHL---IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 196

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK
Sbjct: 197 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 252


>gi|300690924|ref|YP_003751919.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum
           PSI07]
 gi|299077984|emb|CBJ50625.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum
           PSI07]
          Length = 238

 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 129/238 (54%), Positives = 164/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ +Q+R ++LTR  +++AEGS LV FGDT +L TA++  KVP   + +  GW+T
Sbjct: 1   MRPSGRQPDQLRPVTLTRHYTRHAEGSVLVCFGDTQVLCTASVLPKVPPHKKGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGRA+RSV DLSALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGENTIHLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA HD +  M          + ++  VAA+S G++ G P++DLDY 
Sbjct: 121 ADGGTRTASITGAFVAAHDAVSVMR--GRGLLAGEPIRDFVAAVSVGVVDGAPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  D D N VMT SG  VEVQG+AE   F++    A+L LA   I  LI LQK  +
Sbjct: 179 EDSACDTDMNVVMTGSGGFVEVQGTAEGTPFTRTEMDALLGLADQGIRTLIGLQKQAL 236


>gi|296113600|ref|YP_003627538.1| ribonuclease PH [Moraxella catarrhalis RH4]
 gi|295921294|gb|ADG61645.1| ribonuclease PH [Moraxella catarrhalis RH4]
 gi|326562662|gb|EGE12964.1| ribonuclease PH [Moraxella catarrhalis 103P14B1]
 gi|326564700|gb|EGE14918.1| ribonuclease PH [Moraxella catarrhalis 46P47B1]
 gi|326568642|gb|EGE18713.1| ribonuclease PH [Moraxella catarrhalis BC7]
 gi|326568768|gb|EGE18838.1| ribonuclease PH [Moraxella catarrhalis BC8]
 gi|326572636|gb|EGE22625.1| ribonuclease PH [Moraxella catarrhalis CO72]
 gi|326574233|gb|EGE24181.1| ribonuclease PH [Moraxella catarrhalis 101P30B1]
 gi|326575018|gb|EGE24947.1| ribonuclease PH [Moraxella catarrhalis O35E]
          Length = 238

 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 128/239 (53%), Positives = 172/239 (71%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + RQ N++R I   R+ +K+AEGS LV FGDT +L TA++E  VP W++    GW+T
Sbjct: 1   MRSNNRQNNELRPIHFIRQYTKHAEGSVLVCFGDTKVLCTASIEAGVPRWLKGQGKGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R +REA  G+Q GR+QEIQR+IGR+LR+++DLS LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRATGTRTQREAARGKQSGRTQEIQRLIGRSLRAMLDLSKLGENTIYIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+I+GA VAL D L+H++    + +L+Q  L G VAA+S G+  G  ++DLDY
Sbjct: 121 ADGGTRTASISGAAVALIDALEHLQ---RRKKLTQDPLLGLVAAVSVGVNQGRVLLDLDY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDST D D N VMT +G  +E+QG+AE   F++    AML+LA+  I  +I+ QK V+
Sbjct: 178 AEDSTCDTDLNVVMTQAGGFIEIQGTAEEKPFTRAEANAMLDLAELGIGQIIEAQKQVL 236


>gi|85374029|ref|YP_458091.1| ribonuclease PH [Erythrobacter litoralis HTCC2594]
 gi|122544511|sp|Q2NAJ7|RNPH_ERYLH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|84787112|gb|ABC63294.1| RNase PH [Erythrobacter litoralis HTCC2594]
          Length = 237

 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 123/238 (51%), Positives = 163/238 (68%), Gaps = 4/238 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  ++MR I++    +K+AEGSCL+ FGDT +L TA++EE++P W+R    GW+T
Sbjct: 1   MRPSGRAPDEMRAITIETGYTKHAEGSCLIGFGDTKVLCTASVEERLPPWLRGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            EY MLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVDL  LG RQI +DCDVIQ
Sbjct: 61  GEYSMLPRATHTRGNREAARGKQSGRTQEIQRLIGRSLRAVVDLEKLGERQITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQH-MEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+I+GAW+AL   +   ME    K      + G +AAISCG+  G P++DLDY
Sbjct: 121 ADGGTRTASISGAWIALRLAVSGLMEQGQIK---DDPITGKIAAISCGIYNGTPVLDLDY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            EDS  D DANFV+ + G I E Q +AE AT+ ++    +L LA+   A + K Q + 
Sbjct: 178 AEDSNADADANFVLIEGGKIAEAQATAEGATYDEEGLMRLLRLAQIGCAQIFKSQDEA 235


>gi|71909462|ref|YP_287049.1| ribonuclease PH [Dechloromonas aromatica RCB]
 gi|123626372|sp|Q479A2|RNPH_DECAR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|71849083|gb|AAZ48579.1| RNAse PH [Dechloromonas aromatica RCB]
          Length = 238

 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 124/243 (51%), Positives = 169/243 (69%), Gaps = 10/243 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S RQ +Q+R + +TR  +++AEGS L++ GDT +L TA++EE VP ++R    GW+T
Sbjct: 1   MRPSQRQPDQLRTVRITRNFTRHAEGSVLIEMGDTRVLCTASVEENVPPFLRGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALRSV+DL ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATHTRSSREAAKGKQTGRTQEIQRLIGRALRSVIDLKALGERQITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV----LKGHVAAISCGMLCGYPIVD 176
           ADGGTR A+ITGAWVAL+      E C    Q  ++    ++ HVAAIS G+  G P++D
Sbjct: 121 ADGGTRCASITGAWVALY------EACDKLVQAGKLPANPVRDHVAAISVGIYKGAPVLD 174

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           LDY EDS  D D N VMT +G IVE+QG+AE   F+++    +++LA   +  L+  Q+ 
Sbjct: 175 LDYPEDSDCDTDMNVVMTGAGGIVEIQGTAEGEPFTREQMSVLVDLATLGVRHLVAAQQS 234

Query: 237 VIS 239
            ++
Sbjct: 235 ALA 237


>gi|229521070|ref|ZP_04410491.1| ribonuclease PH [Vibrio cholerae TM 11079-80]
 gi|229341955|gb|EEO06956.1| ribonuclease PH [Vibrio cholerae TM 11079-80]
          Length = 257

 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 124/236 (52%), Positives = 166/236 (70%), Gaps = 4/236 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 20  MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 80  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA VAL D   H+     K QL +  +KGHVAA+S G+L    + DL+Y
Sbjct: 140 ADGGTRTASITGASVALADAFAHL---IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 196

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK
Sbjct: 197 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 252


>gi|162329623|ref|YP_001218468.2| ribonuclease PH [Vibrio cholerae O395]
 gi|262167372|ref|ZP_06035080.1| ribonuclease PH [Vibrio cholerae RC27]
 gi|262024174|gb|EEY42867.1| ribonuclease PH [Vibrio cholerae RC27]
          Length = 238

 Score =  252 bits (643), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 124/236 (52%), Positives = 166/236 (70%), Gaps = 4/236 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 1   MRPDNRAADQVRSIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA VAL D   H+     K QL +  +KGHVAA+S G+L    + DL+Y
Sbjct: 121 ADGGTRTASITGASVALADAFAHL---IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK
Sbjct: 178 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 233


>gi|121728030|ref|ZP_01681069.1| ribonuclease PH [Vibrio cholerae V52]
 gi|121629733|gb|EAX62152.1| ribonuclease PH [Vibrio cholerae V52]
 gi|146315337|gb|ABQ19876.1| ribonuclease PH [Vibrio cholerae O395]
 gi|227012057|gb|ACP08267.1| ribonuclease PH [Vibrio cholerae O395]
          Length = 257

 Score =  252 bits (643), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 124/236 (52%), Positives = 166/236 (70%), Gaps = 4/236 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 20  MRPDNRAADQVRSIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 80  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA VAL D   H+     K QL +  +KGHVAA+S G+L    + DL+Y
Sbjct: 140 ADGGTRTASITGASVALADAFAHL---IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 196

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK
Sbjct: 197 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 252


>gi|161582033|ref|NP_229867.2| ribonuclease PH [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|254851339|ref|ZP_05240689.1| ribonuclease PH [Vibrio cholerae MO10]
 gi|255744021|ref|ZP_05417975.1| ribonuclease PH [Vibrio cholera CIRS 101]
 gi|262153620|ref|ZP_06028747.1| ribonuclease PH [Vibrio cholerae INDRE 91/1]
 gi|21759419|sp|Q9KVD6|RNPH_VIBCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254847044|gb|EET25458.1| ribonuclease PH [Vibrio cholerae MO10]
 gi|255738286|gb|EET93677.1| ribonuclease PH [Vibrio cholera CIRS 101]
 gi|262030561|gb|EEY49198.1| ribonuclease PH [Vibrio cholerae INDRE 91/1]
 gi|327483090|gb|AEA77497.1| Ribonuclease PH [Vibrio cholerae LMA3894-4]
          Length = 238

 Score =  252 bits (643), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 124/236 (52%), Positives = 166/236 (70%), Gaps = 4/236 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 1   MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA VAL D   H+     K QL +  +KGHVAA+S G+L    + DL+Y
Sbjct: 121 ADGGTRTASITGASVALADAFAHL---IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK
Sbjct: 178 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 233


>gi|255263447|ref|ZP_05342789.1| ribonuclease PH [Thalassiobium sp. R2A62]
 gi|255105782|gb|EET48456.1| ribonuclease PH [Thalassiobium sp. R2A62]
          Length = 235

 Score =  252 bits (643), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 130/239 (54%), Positives = 174/239 (72%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  ++MR I++   V+K+AEGSCL++ GDTH+L  AT+E++VP ++RN+  GW+T
Sbjct: 1   MRPSGRSIDEMRAITIETDVTKHAEGSCLIQCGDTHVLCAATVEDRVPPFMRNSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA +G Q GR+QEIQR+IGR+LR+ VD  ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATNTRMRREAKNG-QSGRTQEIQRLIGRSLRAGVDRVALGERQITVDCDVIQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +    +   +S  L+  VAAISCG+  G  ++DLDY 
Sbjct: 120 ADGGTRCASITGGWVALKLAVNKLIKAGDI--ISDPLETPVAAISCGIYAGQAVLDLDYP 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD NFVMT S  ++EVQ SAE ATFS+D    +++LA+  +A+L +LQ D  S
Sbjct: 178 EDSEAGVDGNFVMTGS-QMIEVQMSAEGATFSRDQMNELVDLAEKGVAELSRLQIDATS 235


>gi|262277778|ref|ZP_06055571.1| ribonuclease PH [alpha proteobacterium HIMB114]
 gi|262224881|gb|EEY75340.1| ribonuclease PH [alpha proteobacterium HIMB114]
          Length = 237

 Score =  252 bits (643), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 119/236 (50%), Positives = 168/236 (71%), Gaps = 2/236 (0%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
           + R   ++R + +       A+GSCL+KFG+TH++ TA+ E+KVP W++ +  GW+TAEY
Sbjct: 3   NNRSNTELRPVEIIPNYINNADGSCLIKFGNTHVICTASYEDKVPRWLKGSGKGWVTAEY 62

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           GMLPRST  R++REA +G+ GGR+ EIQR+IGR+LR+ +DLS LG   I IDCDVIQADG
Sbjct: 63  GMLPRSTNERMRREASAGKIGGRTSEIQRLIGRSLRASIDLSLLGENLITIDCDVIQADG 122

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
           GTRTA+ITG +VAL+ C++ ++D   K   +  +K HVAAISCG++ G  +VDLDY EDS
Sbjct: 123 GTRTASITGGFVALNQCVKILQD--KKLINTNPIKNHVAAISCGVVNGETLVDLDYKEDS 180

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
             DVDANFV+ +   I+E+Q + E+ T S++    ML  +K  I  LI+ QK+ +S
Sbjct: 181 GADVDANFVINEKNEIIELQLTGEQTTCSEEKLNEMLKYSKQSIQLLIQKQKEALS 236


>gi|254226345|ref|ZP_04919935.1| ribonuclease PH [Vibrio cholerae V51]
 gi|125621150|gb|EAZ49494.1| ribonuclease PH [Vibrio cholerae V51]
          Length = 257

 Score =  252 bits (643), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 124/236 (52%), Positives = 166/236 (70%), Gaps = 4/236 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 20  MRQDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 80  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA VAL D   H+     K QL +  +KGHVAA+S G+L    + DL+Y
Sbjct: 140 ADGGTRTASITGASVALADAFAHL---IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 196

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK
Sbjct: 197 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 252


>gi|260779667|ref|ZP_05888557.1| ribonuclease PH [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604476|gb|EEX30780.1| ribonuclease PH [Vibrio coralliilyticus ATCC BAA-450]
          Length = 238

 Score =  252 bits (643), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 122/240 (50%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + RQ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRQADQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G   + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+    N       +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFQHL--IENGKLKKNPMKGHVAAVSVGILGEDVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++EVQG+AE   F+      +L  A   I +++  QK  + N
Sbjct: 179 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGITEIVAAQKAALEN 238


>gi|149184525|ref|ZP_01862843.1| RNase PH [Erythrobacter sp. SD-21]
 gi|148831845|gb|EDL50278.1| RNase PH [Erythrobacter sp. SD-21]
          Length = 238

 Score =  252 bits (643), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 118/237 (49%), Positives = 163/237 (68%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  ++MR I++    +K+AEGSCL+ FG+T +L TA++EE++P W+R    GW+T
Sbjct: 1   MRPSGRAPDEMRAITIETGYTKHAEGSCLISFGETKVLCTASVEERIPPWLRGRGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            EY MLPR+T  R +REA  G+Q GR+QEIQR+IGR+LR+VVD   LG RQI +DCDVIQ
Sbjct: 61  GEYSMLPRATHTRGQREAAKGKQSGRTQEIQRLIGRSLRAVVDHKKLGERQITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GAWVAL   +  +    +  +    +   VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASISGAWVALRLAVNELMKSGDLVE--DPITAKVAAVSCGIYKGTPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS  D DANFV+ + G I E Q +AE A + ++ F  +L LA+   AD+ + Q + 
Sbjct: 179 EDSNADADANFVLIEGGKIAEAQATAEGAPYDEEAFLRLLRLAQMGCADIFRAQDEA 235


>gi|307249253|ref|ZP_07531250.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306858777|gb|EFM90836.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
          Length = 238

 Score =  252 bits (643), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 123/239 (51%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ+R + +TR  ++YAEGS LV+FG+T +L  AT+EE VP +++  + GW+T
Sbjct: 1   MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VALHD +  +   ++       +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALHDAMSKL--VADGVLKENPMKGLVAAISVGIVNGNAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G +VEVQG+AE   FS      +L+LA   I  L+  Q+  ++
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALA 237


>gi|319789115|ref|YP_004150748.1| ribonuclease PH [Thermovibrio ammonificans HB-1]
 gi|317113617|gb|ADU96107.1| ribonuclease PH [Thermovibrio ammonificans HB-1]
          Length = 234

 Score =  252 bits (643), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 126/238 (52%), Positives = 168/238 (70%), Gaps = 7/238 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q+RE+ +T    K+AEGSCL++FGDT ++ TA++EEKVP ++R T  GWIT
Sbjct: 2   IRSDGRAPDQLREVKITLDYIKHAEGSCLIEFGDTKVICTASVEEKVPPFLRGTGQGWIT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R+ REA  G+  GR+QEIQR+IGR+LRS VDL+ALG   I IDCDVIQ
Sbjct: 62  AEYAMLPRATAQRMVREAARGKLTGRTQEIQRLIGRSLRSAVDLTALGEVTIWIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL+  L+ ME         + ++  +AA+S G++ G  ++DL+Y 
Sbjct: 122 ADGGTRTASITGAFVALYRALEKMEKL-------EAVRSFLAAVSVGIVDGTVLLDLNYE 174

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  +VD N VM + G   EVQGSAE   F++D    MLNLA   I +LI  QK+V+
Sbjct: 175 EDSMAEVDMNVVMNEKGEFAEVQGSAEGRPFTRDELDRMLNLASKGIMELISKQKEVL 232


>gi|254449788|ref|ZP_05063225.1| ribonuclease PH [Octadecabacter antarcticus 238]
 gi|198264194|gb|EDY88464.1| ribonuclease PH [Octadecabacter antarcticus 238]
          Length = 235

 Score =  251 bits (642), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 129/234 (55%), Positives = 172/234 (73%), Gaps = 4/234 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ ++MR IS+   V+++AEGSCL+K GDTH+L TA+++E+VP +++N+  GW+T
Sbjct: 1   MRPSGRKIDEMRSISIEVNVTRHAEGSCLIKCGDTHVLCTASIDERVPPFLKNSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA +G Q GR+QEIQR+IGR+LR+ VD  ALG RQIIIDCDVIQ
Sbjct: 61  AEYGMLPRATNTRMRREAKNG-QSGRTQEIQRLIGRSLRAGVDRVALGERQIIIDCDVIQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +Q +    +   +S  L   VAA+SCG+  G  ++DLDY 
Sbjct: 120 ADGGTRCASITGGWVALKLAVQKLMKAGDV--ISDPLLIPVAAVSCGIYAGQSVLDLDYP 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           EDS   VD NFVMT    ++E+Q SAE +TFS+D   AM++LA   IA+L   Q
Sbjct: 178 EDSEAGVDGNFVMTGD-KLIEIQMSAEGSTFSRDQMNAMMDLADKGIAELTAAQ 230


>gi|307133086|ref|YP_003885102.1| ribonuclease PH [Dickeya dadantii 3937]
 gi|306530615|gb|ADN00546.1| ribonuclease PH [Dickeya dadantii 3937]
          Length = 238

 Score =  251 bits (642), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 126/240 (52%), Positives = 169/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++LTR  +K+AEGS LV+FGDT +L  AT+E+ VP +++    GWIT
Sbjct: 1   MRPTGRSAQQIRPLTLTRHYTKHAEGSVLVEFGDTKVLCNATVEDGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL+ LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLNKLGEYTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  M   S K + S  LKG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNGMV-ASGKLKTSP-LKGMVAAVSVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G ++EVQG+AE   FS D   ++L LA+  I D+++ QK  +++
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLSLLALARQGIEDIVRAQKAALAD 238


>gi|262163750|ref|ZP_06031490.1| ribonuclease PH [Vibrio mimicus VM223]
 gi|262027730|gb|EEY46395.1| ribonuclease PH [Vibrio mimicus VM223]
          Length = 238

 Score =  251 bits (642), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 124/236 (52%), Positives = 166/236 (70%), Gaps = 4/236 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 1   MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA VAL D   H+     K QL +  +KGHVAA+S G+L    + DL+Y
Sbjct: 121 ADGGTRTASITGASVALADAFAHL---IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK
Sbjct: 178 VEDSAADTDMNVVMTEEGKMIEIQGTAEGDPFSHEQLLELLAVAKKGIADIVAVQK 233


>gi|223041894|ref|ZP_03612080.1| ribonuclease PH [Actinobacillus minor 202]
 gi|240948855|ref|ZP_04753211.1| ribonuclease PH [Actinobacillus minor NM305]
 gi|223017310|gb|EEF15735.1| ribonuclease PH [Actinobacillus minor 202]
 gi|240296670|gb|EER47281.1| ribonuclease PH [Actinobacillus minor NM305]
          Length = 238

 Score =  251 bits (642), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ+R + +TR  +KYAEGS L++FG+T +L  AT+EE VP +++  + GW+T
Sbjct: 1   MRPNNRELNQVRPVKITRHYTKYAEGSVLIEFGETKVLCNATVEETVPRFLKGQQQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I IDCDVIQ
Sbjct: 61  AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAIVDLKALGERTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VALHD +  +   ++    +  LKG VAAIS G++    + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALHDAINKL--MADGVLKTNPLKGLVAAISVGIVNNNAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM D G +VEVQG+AE   F+      +L+LA   I  LI+ Q+  ++
Sbjct: 179 EDSNAETDMNVVMVDDGRLVEVQGTAEGEPFTHMELLQLLDLAHQGIEQLIEAQRKALA 237


>gi|186475433|ref|YP_001856903.1| ribonuclease PH [Burkholderia phymatum STM815]
 gi|226736895|sp|B2JEI0|RNPH_BURP8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|184191892|gb|ACC69857.1| ribonuclease PH [Burkholderia phymatum STM815]
          Length = 246

 Score =  251 bits (642), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 126/240 (52%), Positives = 170/240 (70%), Gaps = 2/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R++ +TR  +K+AEGS LV+FGDT ++ TA++ E VP ++R+   GW+TA
Sbjct: 7   RPSGRTADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAESVPAFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALRSV DL  LG+R + IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLERLGARTLHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA  D +  +   + + + S +   +VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAARDAVAKLL-ATGRIETSPITD-YVAAISVGVFDGIPVLDLDYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  D D N VMT  G  VE+QG+AE   FS+D    +L+LA+  IA LI  QK+ + ++
Sbjct: 185 DSQCDTDMNVVMTGDGGFVEIQGTAEGVPFSRDEMNKLLDLAQAGIATLIAKQKEALESK 244


>gi|319795588|ref|YP_004157228.1| ribonuclease ph [Variovorax paradoxus EPS]
 gi|315598051|gb|ADU39117.1| ribonuclease PH [Variovorax paradoxus EPS]
          Length = 243

 Score =  251 bits (642), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 122/237 (51%), Positives = 169/237 (71%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R + +TR  + +AEGS L++FG T +L TA++EE+VP   + +  GW+TA
Sbjct: 6   RSGGRAADQLRPVRITRGFTIHAEGSVLIEFGQTRVLCTASVEERVPPHKKGSGEGWVTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR++R+V DL+ALG R I +DCDV+QA
Sbjct: 66  EYGMLPRATHTRSSREAAKGKQTGRTQEIQRLIGRSMRAVFDLAALGERTIHLDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VA  D +  +   +   + S + KGHVAAIS G++ G P++DL+Y E
Sbjct: 126 DGGTRTAAITGAFVAAQDAVNKLL-AAGTLKASPI-KGHVAAISVGIVGGTPLLDLEYTE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS+ D D N VMT +GH VEVQG+AE   F+++    +L LA+  I +L+ LQK  +
Sbjct: 184 DSSCDTDMNVVMTGAGHFVEVQGTAEGVAFTREEMNLLLGLAEKGIGELVTLQKQAL 240


>gi|271498722|ref|YP_003331747.1| ribonuclease PH [Dickeya dadantii Ech586]
 gi|270342277|gb|ACZ75042.1| ribonuclease PH [Dickeya dadantii Ech586]
          Length = 238

 Score =  251 bits (641), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 126/240 (52%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++ TR  +K+AEGS LV+FGDT +L  AT+EE VP +++    GWIT
Sbjct: 1   MRPTGRSAQQIRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL+ LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLNKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  M   S K + S  LKG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNGMV-ASGKLKASP-LKGMVAAVSVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G ++EVQG+AE   FS D   ++L LA+  I D+++ QK  +++
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLSLLALARQGIEDIVRAQKATLAD 238


>gi|72119576|gb|AAZ61839.1| RNAse PH [Ralstonia eutropha JMP134]
          Length = 258

 Score =  251 bits (641), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 128/238 (53%), Positives = 165/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  + +R ISLTR  +++AEGS L  FGDT +L TA++  KVP   + +  GW+T
Sbjct: 20  MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHKKGSGEGWVT 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRA+RSV DL+ALG   + +DCDV+Q
Sbjct: 80  AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTLHLDCDVLQ 139

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VA HD +  M    +    +  ++  VAA+S GM+ G P++DLDY 
Sbjct: 140 ADGGTRTAAITGAFVAAHDAISTM--LRDGLIAASPIRDFVAAVSVGMVDGVPLLDLDYA 197

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  D D N VMT SG  VEVQG+AE A FS+    AM  LA+D IA L++ Q+  +
Sbjct: 198 EDSNCDTDMNVVMTGSGGFVEVQGTAEGAAFSRADLDAMTRLAEDGIAQLVRHQRQAL 255


>gi|187929359|ref|YP_001899846.1| ribonuclease PH [Ralstonia pickettii 12J]
 gi|309781786|ref|ZP_07676519.1| tRNA nucleotidyltransferase [Ralstonia sp. 5_7_47FAA]
 gi|226736927|sp|B2U8D8|RNPH_RALPJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|187726249|gb|ACD27414.1| ribonuclease PH [Ralstonia pickettii 12J]
 gi|308919427|gb|EFP65091.1| tRNA nucleotidyltransferase [Ralstonia sp. 5_7_47FAA]
          Length = 238

 Score =  251 bits (641), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 130/239 (54%), Positives = 167/239 (69%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ +Q+R ++LTR+ +++AEGS LV FGDT +L TA++  KVP   + +  GW+T
Sbjct: 1   MRPSGRQPDQLRPVTLTRKFTRHAEGSVLVCFGDTQVLCTASVLPKVPPHKKGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGRA+R+V DL ALG   + +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRTVFDLRALGEHTLHLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-SQVLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA+VA +D +  M +   K QL    ++  VAA+S G++ G P++DLDY
Sbjct: 121 ADGGTRTASITGAFVAAYDAVSVMRE---KGQLVGDPVRDFVAAVSVGVVDGVPVLDLDY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS  D D N VMT SG  VEVQG+AE   FS+    AML LA   I  LI LQK  +
Sbjct: 178 PEDSACDTDMNVVMTGSGGFVEVQGTAEGTPFSRAEMDAMLGLADQGIRTLISLQKQAL 236


>gi|239817292|ref|YP_002946202.1| ribonuclease PH [Variovorax paradoxus S110]
 gi|239803869|gb|ACS20936.1| ribonuclease PH [Variovorax paradoxus S110]
          Length = 243

 Score =  251 bits (641), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 123/234 (52%), Positives = 167/234 (71%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R + +TR  + +AEGS L++FG T +L TA++EE+VP   R +  GW+TA
Sbjct: 6   RSGGRAADQLRPVRITRGFTIHAEGSVLIEFGQTRVLCTASVEERVPPHKRGSGEGWVTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR++R+V DL+ALG R I +DCDV+QA
Sbjct: 66  EYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSMRAVFDLAALGERTIHLDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VA  D +  +   +     +  ++GHVAAIS G++ G P++DL+Y E
Sbjct: 126 DGGTRTAAITGAFVAAQDAVNKL--LAAGTIPASPIRGHVAAISVGIVAGTPLLDLEYTE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  D D N VMT +GH VEVQG+AE A FS++    +L LA+  I +LI LQ+
Sbjct: 184 DSACDTDMNVVMTGAGHFVEVQGTAEGAAFSREEMNLLLGLAEKGIGELIVLQQ 237


>gi|322513841|ref|ZP_08066923.1| tRNA nucleotidyltransferase [Actinobacillus ureae ATCC 25976]
 gi|322120328|gb|EFX92267.1| tRNA nucleotidyltransferase [Actinobacillus ureae ATCC 25976]
          Length = 238

 Score =  251 bits (641), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 123/238 (51%), Positives = 166/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ+R + +TR  ++YAEGS LV+FG+T +L  AT+EE VP +++  + GW+T
Sbjct: 1   MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VALHD +  +   ++       +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALHDAMSKL--VADSVLKENPMKGLVAAISVGIVDGNAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VM + G +VEVQG+AE   FS      +L+LA   I  L+  Q+  +
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKAL 236


>gi|161611257|ref|YP_296683.2| ribonuclease PH [Ralstonia eutropha JMP134]
          Length = 239

 Score =  251 bits (641), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 128/238 (53%), Positives = 165/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  + +R ISLTR  +++AEGS L  FGDT +L TA++  KVP   + +  GW+T
Sbjct: 1   MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHKKGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRA+RSV DL+ALG   + +DCDV+Q
Sbjct: 61  AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTLHLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VA HD +  M    +    +  ++  VAA+S GM+ G P++DLDY 
Sbjct: 121 ADGGTRTAAITGAFVAAHDAISTM--LRDGLIAASPIRDFVAAVSVGMVDGVPLLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  D D N VMT SG  VEVQG+AE A FS+    AM  LA+D IA L++ Q+  +
Sbjct: 179 EDSNCDTDMNVVMTGSGGFVEVQGTAEGAAFSRADLDAMTRLAEDGIAQLVRHQRQAL 236


>gi|323497057|ref|ZP_08102080.1| ribonuclease PH [Vibrio sinaloensis DSM 21326]
 gi|323317901|gb|EGA70889.1| ribonuclease PH [Vibrio sinaloensis DSM 21326]
          Length = 238

 Score =  251 bits (641), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 121/240 (50%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G   + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ +   K + +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVE-KGKLK-ANPMKGHVAAVSVGILGEDILCDLEYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++EVQG+AE   F+      +L  A   I++++  QK  + N
Sbjct: 179 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGISEIVAAQKAALEN 238


>gi|262404946|ref|ZP_06081498.1| ribonuclease PH [Vibrio sp. RC586]
 gi|262348785|gb|EEY97926.1| ribonuclease PH [Vibrio sp. RC586]
          Length = 238

 Score =  251 bits (640), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 123/236 (52%), Positives = 165/236 (69%), Gaps = 4/236 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 1   MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+    I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMSEIMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA VAL D   H+     K QL +  +KGHVAA+S G+L    + DL+Y
Sbjct: 121 ADGGTRTASITGASVALADAFAHL---MAKGQLKKNPMKGHVAAVSVGILGENVLCDLEY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK
Sbjct: 178 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 233


>gi|83746454|ref|ZP_00943505.1| Ribonuclease PH [Ralstonia solanacearum UW551]
 gi|207723807|ref|YP_002254205.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein
           [Ralstonia solanacearum MolK2]
 gi|207743767|ref|YP_002260159.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein
           [Ralstonia solanacearum IPO1609]
 gi|300703571|ref|YP_003745173.1| RNAse ph (tRNA nucleotidyltransferase) [Ralstonia solanacearum
           CFBP2957]
 gi|83726785|gb|EAP73912.1| Ribonuclease PH [Ralstonia solanacearum UW551]
 gi|206589012|emb|CAQ35974.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein
           [Ralstonia solanacearum MolK2]
 gi|206595166|emb|CAQ62093.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein
           [Ralstonia solanacearum IPO1609]
 gi|299071234|emb|CBJ42552.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum
           CFBP2957]
          Length = 238

 Score =  251 bits (640), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 127/238 (53%), Positives = 165/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ +Q+R ++LTR  +++AEGS LV FGDTH+L TA++  KVP   + +  GW+T
Sbjct: 1   MRPSGRQPDQLRSVTLTRHYTRHAEGSVLVCFGDTHVLCTASVLPKVPPHKKGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGRA+RSV DLSALG   + +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTLHLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA +D +  M          + ++  VAA+S G++ G P++DLDY 
Sbjct: 121 ADGGTRTASITGAFVAAYDAVSVMR--GKGLLTGEPIRDFVAAVSVGVVDGVPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  D D N VMT +G  VEVQG+AE   F++    A+L LA   I  LI LQK  +
Sbjct: 179 EDSACDTDMNVVMTGNGGFVEVQGTAEGTPFTRTEMDALLGLADQGIRTLIGLQKQAL 236


>gi|94499853|ref|ZP_01306389.1| ribonuclease PH [Oceanobacter sp. RED65]
 gi|94428054|gb|EAT13028.1| ribonuclease PH [Oceanobacter sp. RED65]
          Length = 238

 Score =  251 bits (640), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 123/240 (51%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R++ +TR  +K+AEGS LV+ GDT ++  A++E KVP ++R    GW+T
Sbjct: 1   MRPSGRALDQLRDVKITRNFTKHAEGSVLVEVGDTKVICNASVENKVPPFLRGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R+ REA  G+QGGR+ EI R+IGR+LR+ VDL ALG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMIREAAKGKQGGRTVEISRLIGRSLRAAVDLEALGENSITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITGA VAL D +  M +       +  LK  +AA+S G+  G  I+DLDY 
Sbjct: 121 ADGGTRCASITGACVALADAINSMIEAGT--LKASPLKYMIAAVSVGVYEGQAILDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N +M D+G  VE+QG+AE   F  +   AML+LAK  +A++ ++QK  ++N
Sbjct: 179 EDSNAETDLNVIMADNGGFVEIQGTAEGEPFQPEELTAMLDLAKKGLAEITEIQKQSLAN 238


>gi|32035564|ref|ZP_00135495.1| COG0689: RNase PH [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|126207543|ref|YP_001052768.1| ribonuclease PH [Actinobacillus pleuropneumoniae L20]
 gi|165975512|ref|YP_001651105.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|303251878|ref|ZP_07338049.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247031|ref|ZP_07529085.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|307260507|ref|ZP_07542201.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|166228262|sp|A3MYC7|RNPH_ACTP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736879|sp|B0BRL3|RNPH_ACTPJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|126096335|gb|ABN73163.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
 gi|165875613|gb|ABY68661.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|302649308|gb|EFL79493.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306856483|gb|EFM88632.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|306869819|gb|EFN01602.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 238

 Score =  251 bits (640), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ+R + +TR  ++YAEGS LV+FG+T +L  AT+EE VP +++  + GW+T
Sbjct: 1   MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VALHD +  +   ++       +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALHDAMSKL--VADGVLKENPMKGLVAAISVGIVDGNAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G +VEVQG+AE   FS      +L+LA   I  L+  Q+  ++
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALA 237


>gi|323527036|ref|YP_004229189.1| ribonuclease PH [Burkholderia sp. CCGE1001]
 gi|323384038|gb|ADX56129.1| ribonuclease PH [Burkholderia sp. CCGE1001]
          Length = 246

 Score =  251 bits (640), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 127/234 (54%), Positives = 166/234 (70%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R++ +TR  +K+AEGS LV+FGDT ++ TA++ E VP ++R+   GW+TA
Sbjct: 7   RPSGRLADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAETVPSFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALRSV DL  LG+R + IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   + + + S  +   VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLL-AAGRIE-SSPISDFVAAISVGVYDGVPVLDLDYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  D D N VMT +G  VE+QG+AE   FS+D   A+L+LA   IA L   QK
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMNALLDLASSGIATLTAKQK 238


>gi|312882913|ref|ZP_07742645.1| ribonuclease PH [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369432|gb|EFP96952.1| ribonuclease PH [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 238

 Score =  251 bits (640), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 125/240 (52%), Positives = 170/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRLADQIRPIKMTRHYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMRREASSGKQGGRTLEIQRLIARSLRAVVDLEAMGEMMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  + +   S K +    +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFETLVK-SGKLK-HNPMKGHVAAVSVGILGQDILCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++EVQG+AE   FS+     +L++A+  IAD++K QK  + N
Sbjct: 179 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFSRQELNVLLDVAEKGIADIVKAQKLALEN 238


>gi|294085187|ref|YP_003551947.1| RNase PH [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664762|gb|ADE39863.1| RNase PH [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 245

 Score =  251 bits (640), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 128/240 (53%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  + +R I+L    S +AEGSCLV+ G+TH+L TA+++E+VP ++RN+  GW+TA
Sbjct: 3   RPSGRAYDALRSITLESGFSLHAEGSCLVRCGNTHVLCTASVDERVPSFLRNSGKGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+QGGR+ EIQR+IGR+LR+V DL ALG RQI IDCDVIQA
Sbjct: 63  EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRSLRAVTDLKALGERQIKIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGAWVAL    + +       +  Q +  +VAAISCG+  G  ++DLDY E
Sbjct: 123 DGGTRTASITGAWVALKIACEKLLLAGAITR--QPIIDNVAAISCGVYKGNSVLDLDYDE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  ++DANFVM+  G +VE+Q + E   FS+D   AML+LA+   A L  LQ   +  +
Sbjct: 181 DSNAEIDANFVMSADGGLVEIQATGEEKPFSRDVLNAMLDLAEAGGATLFALQDQAVQTD 240


>gi|261250540|ref|ZP_05943115.1| ribonuclease PH [Vibrio orientalis CIP 102891]
 gi|323495223|ref|ZP_08100305.1| ribonuclease PH [Vibrio brasiliensis LMG 20546]
 gi|260939109|gb|EEX95096.1| ribonuclease PH [Vibrio orientalis CIP 102891]
 gi|323310483|gb|EGA63665.1| ribonuclease PH [Vibrio brasiliensis LMG 20546]
          Length = 238

 Score =  251 bits (640), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 121/240 (50%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G   + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ +   K + +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVE-KGKLK-ANPMKGHVAAVSVGILGEDILCDLEYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++EVQG+AE   F+      +L  A   I +++  QK  + N
Sbjct: 179 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGITEIVAAQKAALEN 238


>gi|222056103|ref|YP_002538465.1| ribonuclease PH [Geobacter sp. FRC-32]
 gi|254808588|sp|B9M3E3|RNPH_GEOSF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|221565392|gb|ACM21364.1| ribonuclease PH [Geobacter sp. FRC-32]
          Length = 238

 Score =  250 bits (639), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 128/240 (53%), Positives = 170/240 (70%), Gaps = 4/240 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR E  +RE+ +TR   K+AEGS LV+FGDT ++ TA++E  VP ++R    GW+T
Sbjct: 1   MRFDGRGEGSLREVRITRNYIKHAEGSVLVEFGDTKVICTASVESSVPPFLRGKGTGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  REA  G+ GGR+ EIQR+IGR+LR+VVD+S LG R IIIDCDVIQ
Sbjct: 61  AEYSMLPRATHSRSPREAAKGKVGGRTHEIQRLIGRSLRAVVDMSLLGERSIIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL D LQ +     K +LS + ++  VAA+S G++ G  ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVALCDALQGL---VAKGELSSLPIREAVAAVSVGIVGGVAVLDLNY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  +VD NFVMT S   VEVQG+AE   F+ +   AM  LA D I  L ++Q+ V++
Sbjct: 178 VEDSAAEVDMNFVMTSSNRFVEVQGTAEAEPFTIEQMDAMRTLAVDGIKQLFQIQQAVLA 237


>gi|254507299|ref|ZP_05119435.1| ribonuclease PH [Vibrio parahaemolyticus 16]
 gi|219549759|gb|EED26748.1| ribonuclease PH [Vibrio parahaemolyticus 16]
          Length = 240

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 121/240 (50%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 3   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G   + +DCDVIQ
Sbjct: 63  AEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ +   K + +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 123 ADGGTRTASISGASVAMADAFQHLVE-KGKLK-ANPMKGHVAAVSVGILGEDILCDLEYT 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++EVQG+AE   F+      +L  A   I +++  QK  + N
Sbjct: 181 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGITEIVAAQKAALEN 240


>gi|258620570|ref|ZP_05715607.1| ribonuclease PH [Vibrio mimicus VM573]
 gi|262172697|ref|ZP_06040375.1| ribonuclease PH [Vibrio mimicus MB-451]
 gi|258587085|gb|EEW11797.1| ribonuclease PH [Vibrio mimicus VM573]
 gi|261893773|gb|EEY39759.1| ribonuclease PH [Vibrio mimicus MB-451]
          Length = 238

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 123/236 (52%), Positives = 165/236 (69%), Gaps = 4/236 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 1   MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+    I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMSEIMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA VAL D   H+     K QL +  +KGHVAA+S G+L    + DL+Y
Sbjct: 121 ADGGTRTASITGASVALADAFAHL---MAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK
Sbjct: 178 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQK 233


>gi|307256075|ref|ZP_07537863.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306865497|gb|EFM97392.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 238

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ+R + +TR  ++YAEGS LV+FG+T +L  AT+EE VP +++  + GW+T
Sbjct: 1   MRPNNRKLNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VALHD +  +   ++       +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALHDAMSKL--VADGVLKENPMKGLVAAISVGIVDGNAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G +VEVQG+AE   FS      +L+LA   I  L+  Q+  ++
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALA 237


>gi|258544503|ref|ZP_05704737.1| tRNA nucleotidyltransferase [Cardiobacterium hominis ATCC 15826]
 gi|258520238|gb|EEV89097.1| tRNA nucleotidyltransferase [Cardiobacterium hominis ATCC 15826]
          Length = 238

 Score =  250 bits (638), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 123/239 (51%), Positives = 170/239 (71%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R+ +Q+R +S+ R V+KYAEGS L++ GDTH+L TA++EEKVP ++R    GW+T
Sbjct: 1   MRASNRRPDQLRPVSIERGVNKYAEGSALIRCGDTHVLCTASVEEKVPPFLRGKNQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  RE+  G+Q GR+ EIQR+IGR+LR+VVDL+ALG R I IDCDV+Q
Sbjct: 61  AEYGMLPRATHERTVRESARGKQQGRTVEIQRLIGRSLRAVVDLTALGERAITIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTAAI+G +VAL D ++ +     + +L Q  L G +AA+S G+  G P++DL+Y
Sbjct: 121 ADGGTRTAAISGGFVALADAIRTL---IQQGRLKQNPLHGQLAAVSVGVYRGTPLLDLEY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS  + D N VM D G  +E+QG+AE   F  +   AML LA   I +++++QK  +
Sbjct: 178 AEDSEAETDMNIVMNDGGAFIEIQGTAEGHAFRHEEMQAMLALADKGIREIMQVQKQAL 236


>gi|92115321|ref|YP_575249.1| ribonuclease PH [Chromohalobacter salexigens DSM 3043]
 gi|91798411|gb|ABE60550.1| RNAse PH [Chromohalobacter salexigens DSM 3043]
          Length = 245

 Score =  250 bits (638), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 126/238 (52%), Positives = 163/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ +Q REI+L R  +++AEGS LV FGDT +L  A++E  VP W+R  + GWIT
Sbjct: 6   MRPSGRQPDQPREITLERGYTRHAEGSVLVSFGDTKVLCNASVEAGVPRWLRGKQQGWIT 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+IGR+LR+VVDL  LG   I +DCDVIQ
Sbjct: 66  AEYGMLPRATHTRGGREATRGKQGGRTLEIQRLIGRSLRTVVDLKKLGEFTITVDCDVIQ 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG  VAL D + H++    K       K  V+++S G+  G P+VDLDY 
Sbjct: 126 ADGGTRTASITGGCVALVDAIHHLQ--REKLIKKDPFKQLVSSVSVGIFKGQPVVDLDYP 183

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDST   D N VM + G ++EVQG+AE ATF++    AML+LA+     L   Q++ +
Sbjct: 184 EDSTAGTDMNVVMAEDGGLIEVQGTAETATFTRQELNAMLDLAEGAGRQLFAHQREAL 241


>gi|114330335|ref|YP_746557.1| ribonuclease PH [Nitrosomonas eutropha C91]
 gi|122314626|sp|Q0AJ79|RNPH_NITEC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|114307349|gb|ABI58592.1| RNAse PH [Nitrosomonas eutropha C91]
          Length = 242

 Score =  250 bits (638), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 123/239 (51%), Positives = 169/239 (70%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R + R   QMR I +TR   ++AEGS L+++G+T ++ TA++ EKVP +++    GW+TA
Sbjct: 3   RYNHRTLAQMRPIRITRHYIRHAEGSVLIEYGETKVICTASVIEKVPPFLKGAGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R++REA  G+Q GR+ EIQR+IGRALRSV+DL  LG R I IDCDVIQA
Sbjct: 63  EYGMLPRSTGERMQREAAKGKQSGRTMEIQRLIGRALRSVLDLKKLGERTIQIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D + ++   + K      +K HVAA+S G+L G P++DLDY E
Sbjct: 123 DGGTRTASITGAFVALCDAVGYLR--AEKIISENPIKDHVAAVSVGILKGQPLLDLDYAE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS+ D D N VMT +  +VEVQG+AE+  FS+     ML++A+  + +L  LQ+  +  
Sbjct: 181 DSSCDTDLNVVMTGNLGLVEVQGTAEKVVFSRQELDVMLDMAQQGLQELFDLQRKTLET 239


>gi|152979839|ref|YP_001353022.1| ribonuclease PH [Janthinobacterium sp. Marseille]
 gi|151279916|gb|ABR88326.1| ribonuclease PH [Janthinobacterium sp. Marseille]
          Length = 244

 Score =  250 bits (638), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 125/238 (52%), Positives = 165/238 (69%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  + +R I LTR  +K+AEGS L++ GDT ++ TA++E++VP +++    GW+TA
Sbjct: 6   RPSGRAADALRAIKLTRNYTKHAEGSVLIECGDTKVICTASIEDRVPGFLKGKGQGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R+ REA  G+Q GR+QEIQR+IGR+LR+  DL A G R + +DCDVIQA
Sbjct: 66  EYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRSLRAAFDLQAFGERTLHLDCDVIQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITG  VA +D    +   +     +  LK  VAAIS G+  G P++DLDY E
Sbjct: 126 DGGTRTAAITGTMVAAYDAFSKL--VAQNVIPAIPLKHFVAAISVGVYKGQPVLDLDYDE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMTD+GH +EVQG+AE A F +     +L+LA+D I DLI LQK  ++
Sbjct: 184 DSDCDTDMNIVMTDAGHFIEVQGTAEGAAFDRATMDKLLDLAQDGIRDLIVLQKQALA 241


>gi|326559598|gb|EGE10012.1| ribonuclease PH [Moraxella catarrhalis 7169]
 gi|326567722|gb|EGE17828.1| ribonuclease PH [Moraxella catarrhalis BC1]
          Length = 238

 Score =  250 bits (638), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 127/239 (53%), Positives = 171/239 (71%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + RQ N++R I   R+ +K+AEGS LV FGDT +L TA++E  VP W++    GW+T
Sbjct: 1   MRSNNRQNNELRPIHFIRQYTKHAEGSVLVCFGDTKVLCTASIEAGVPRWLKGQGKGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R +REA  G+Q GR+QEIQR+IGR+LR+++DLS LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRATGTRTQREAARGKQSGRTQEIQRLIGRSLRAMLDLSKLGENTIYIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+I+GA VAL D L+H++    + +L+Q  L G VAA+S G+  G  ++DLDY
Sbjct: 121 ADGGTRTASISGAAVALIDALEHLQ---RRKKLTQDPLLGLVAAVSVGVNQGRVLLDLDY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDST D D N VM  +G  +E+QG+AE   F++    AML+LA+  I  +I+ QK V+
Sbjct: 178 AEDSTCDTDLNVVMMQAGGFIEIQGTAEEKPFTRAEANAMLDLAELGIGQIIEAQKQVL 236


>gi|84514911|ref|ZP_01002274.1| ribonuclease PH [Loktanella vestfoldensis SKA53]
 gi|84511070|gb|EAQ07524.1| ribonuclease PH [Loktanella vestfoldensis SKA53]
          Length = 235

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 130/234 (55%), Positives = 169/234 (72%), Gaps = 4/234 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ N+MR +++   V+ +AEGSCL+K G+TH+L TAT++++VP +++N+  GW+T
Sbjct: 1   MRPSGRQINEMRNVTIETNVTMHAEGSCLIKCGNTHVLCTATIDDRVPPFLKNSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA  G Q GR+QEIQR+IGR+LR+ VD  ALG RQII+DCDVIQ
Sbjct: 61  AEYGMLPRATNTRMRREAKEG-QSGRTQEIQRLIGRSLRAGVDRVALGERQIIVDCDVIQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   L  ++       +S  L   VAAISCG+  G  ++DLDY 
Sbjct: 120 ADGGTRCASITGGWVALK--LAVLKLMKTGQIISDPLVDPVAAISCGIYAGQEVLDLDYP 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           EDS   VD NFVMT  G +VEVQ SAE ATFS+     +L LA+  +A+L  LQ
Sbjct: 178 EDSEAGVDGNFVMT-GGRLVEVQMSAEGATFSRAQMDGLLGLAEKGVAELTALQ 230


>gi|304407458|ref|ZP_07389110.1| ribonuclease PH [Paenibacillus curdlanolyticus YK9]
 gi|304343409|gb|EFM09251.1| ribonuclease PH [Paenibacillus curdlanolyticus YK9]
          Length = 248

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 123/239 (51%), Positives = 170/239 (71%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+  Q+R I++   V+KYAEGS L+ FGDT +L TAT+E++VP +++    GW+T
Sbjct: 1   MRIDGREAAQLRSITIETGVNKYAEGSVLIAFGDTKVLVTATVEDRVPPFMKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R +REA  G+ GGR+ EIQR+IGRALRSVVDL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATQSRNQREAARGKLGGRTMEIQRLIGRALRSVVDLQALGERTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHM-EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRT +ITGA++AL   +  + E  S K   S  +  ++A++S G++ G P++DL+Y
Sbjct: 121 ADGGTRTTSITGAFIALAIAVDKLAEKASFK---SYPITDYLASVSVGVVNGSPVLDLNY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT +G  VEVQG+ E + FS+    A+L LA+  I +LI  Q++V+
Sbjct: 178 DEDSKAKVDMNVVMTGAGQFVEVQGTGEESPFSRSELDALLGLAETGITELIGKQREVL 236


>gi|190149324|ref|YP_001967849.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|307244856|ref|ZP_07526955.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307253810|ref|ZP_07535664.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258266|ref|ZP_07540009.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|307262637|ref|ZP_07544267.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|226736878|sp|B3GZP5|RNPH_ACTP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189914455|gb|ACE60707.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|306854301|gb|EFM86507.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306863294|gb|EFM95234.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867726|gb|EFM99571.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306872060|gb|EFN03774.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 238

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 122/238 (51%), Positives = 166/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ+R + +TR  ++YAEGS LV+FG+T +L  AT+EE VP +++  + GW+T
Sbjct: 1   MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VALHD +  +   ++       +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALHDAMSKL--VADGVLKENPMKGLVAAISVGIVDGNAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VM + G +VEVQG+AE   FS      +L+LA   I  L+  Q+  +
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKAL 236


>gi|291612874|ref|YP_003523031.1| ribonuclease PH [Sideroxydans lithotrophicus ES-1]
 gi|291582986|gb|ADE10644.1| ribonuclease PH [Sideroxydans lithotrophicus ES-1]
          Length = 238

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 125/238 (52%), Positives = 165/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R+ +Q+R I +TR  +K+AEGS L++ GDT ++ TA++EE+VP   + +  GW+T
Sbjct: 1   MRPSQRKHDQLRAIRITRHYTKHAEGSVLIECGDTKVICTASVEERVPPHKKGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG R+ REA  G+Q GR+QEIQR+IGR+LR+VVDL  LG R + +DCDVIQ
Sbjct: 61  AEYGMLPRSTGERMSREAAKGKQSGRTQEIQRLIGRSLRAVVDLGKLGERTVTLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D +  +            LK  VAAIS G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAFVALSDAVAAL--MQQGLVKENPLKHAVAAISVGIYQGIPVLDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  D D N VM  +GH VEVQG+AE   FS++    +L LAK  I  L+ +Q+  +
Sbjct: 179 EDSDCDTDMNVVMLGNGHFVEVQGTAEGHAFSREEMDTLLELAKHGITQLVAMQQKAL 236


>gi|20807113|ref|NP_622284.1| RNase PH [Thermoanaerobacter tengcongensis MB4]
 gi|22096086|sp|Q8RC30|RNPH_THETN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|20515606|gb|AAM23888.1| RNase PH [Thermoanaerobacter tengcongensis MB4]
          Length = 261

 Score =  249 bits (636), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 123/240 (51%), Positives = 173/240 (72%), Gaps = 4/240 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ N++R I +TR  +K+AEGS L++ G+T ++ TA++E+KVP + + T  GWIT+
Sbjct: 3   RIDGREFNELRPIKITRNFNKFAEGSVLIEMGETKVICTASIEDKVPPFQKGTGKGWITS 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  RE   GR  GR+ EIQR+IGR+LR+VVDL ALG R I IDCDVIQA
Sbjct: 63  EYGMLPRATEVRNPREVTKGRPSGRTMEIQRLIGRSLRAVVDLEALGERTIWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTA+ITG+++AL D L  + +   K +L ++ LK  VAA+S G++ G  ++DL + 
Sbjct: 123 DGGTRTASITGSFIALADALNKLVE---KGELQKIPLKSFVAAVSVGIVEGNKLLDLSFQ 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED+   VD N VMTD G IVE+QG+ E   FS+ +F  +L+LA   I  +IK+QK+V+S+
Sbjct: 180 EDANALVDMNVVMTDKGEIVEIQGTGEGGPFSRQNFEELLDLAAHGIEQIIKIQKEVLSD 239


>gi|256823650|ref|YP_003147613.1| ribonuclease PH [Kangiella koreensis DSM 16069]
 gi|256797189|gb|ACV27845.1| ribonuclease PH [Kangiella koreensis DSM 16069]
          Length = 238

 Score =  249 bits (636), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 121/239 (50%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  NQ+R I++TR+ +K+AEGS L++FG+T +L  A++ + VP +++    GWIT
Sbjct: 1   MRPSGRTSNQLRPITITRQFTKHAEGSVLIEFGETKVLCNASVVDNVPRFLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+IGR+LR+ VDLS LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRMDREASRGKQGGRTLEIQRLIGRSLRAAVDLSQLGENTIYVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA +ALHD L HM         +  LK  V ++S G+  G PI+DLDY 
Sbjct: 121 ADGGTRTASISGASIALHDALFHMRKTG--MIKTNPLKHMVGSVSVGIYKGTPILDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM ++G  +E+QG+AE  TF+ D    ML L K  I ++  LQ   ++
Sbjct: 179 EDSAAETDMNLVMDENGGFIEIQGTAEGETFTGDELMQMLELGKQGIREIFDLQHKAVA 237


>gi|152978104|ref|YP_001343733.1| ribonuclease PH [Actinobacillus succinogenes 130Z]
 gi|171472953|sp|A6VLF1|RNPH_ACTSZ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|150839827|gb|ABR73798.1| ribonuclease PH [Actinobacillus succinogenes 130Z]
          Length = 238

 Score =  249 bits (636), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 124/240 (51%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  NQ R I +TR  +K+AEGS LV+FGDT +L TAT++E VP +++    GW+T
Sbjct: 1   MRPNNRAINQPRPIKITRHYTKHAEGSVLVEFGDTKVLCTATVDESVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSVTLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  + D  N       LKG VAAIS G++ G P+ DL+Y 
Sbjct: 121 ADGGTRTASITGACVALIDAVNGLVD--NGTLTVSPLKGLVAAISVGIVDGTPVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +    +LNLAK     + + Q+  +++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLNLAKQGCKRIFEAQRAALAD 238


>gi|332188380|ref|ZP_08390105.1| ribonuclease PH [Sphingomonas sp. S17]
 gi|332011609|gb|EGI53689.1| ribonuclease PH [Sphingomonas sp. S17]
          Length = 238

 Score =  249 bits (636), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 119/214 (55%), Positives = 157/214 (73%), Gaps = 2/214 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +QMR I++    +++AEGS L+ FGDT +L TA++EE+VP ++R    GW+T
Sbjct: 1   MRPSGRMPDQMRPITIEPNFTRHAEGSVLIGFGDTKVLVTASVEERVPPFLRGKGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V DL ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVCDLKALGERQITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+GAWVAL   +  +   +     S  ++  VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAISGAWVALRMAVNKL--MAEGKLTSDPIRHKVAAVSCGIHQGTPVLDLDYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
           EDS  D DANFV+ ++GHI EVQ +AE AT+ ++
Sbjct: 179 EDSNADADANFVLIENGHIAEVQATAEHATYDEE 212


>gi|303250534|ref|ZP_07336731.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307251576|ref|ZP_07533483.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|302650522|gb|EFL80681.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306861040|gb|EFM93046.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 238

 Score =  249 bits (636), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ+R + +TR  ++YAEGS LV+FG+T +L  AT+EE VP +++  + GW+T
Sbjct: 1   MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR+VVDL  LG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKVLGERTITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VALHD +  +   ++       +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALHDAMSKL--VADGVLKENPMKGLVAAISVGIVDGNAVCDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G +VEVQG+AE   FS      +L+LA   I  L+  Q+  ++
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALA 237


>gi|114326689|ref|YP_743846.1| ribonuclease PH [Granulibacter bethesdensis CGDNIH1]
 gi|114314863|gb|ABI60923.1| ribonuclease PH [Granulibacter bethesdensis CGDNIH1]
          Length = 250

 Score =  249 bits (636), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 122/237 (51%), Positives = 163/237 (68%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  + +R +SL    + +AEGSCL++ G T +L TA+ E ++P ++R T  GW+TA
Sbjct: 10  RPSGRAADALRSVSLETGFAHHAEGSCLIRMGRTEVLCTASAEPRIPGFLRGTGKGWVTA 69

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+VVD  A+G   I +DCDV+ A
Sbjct: 70  EYGMLPRATHKRGDREAARGKQSGRTQEIQRLIGRALRAVVDRDAMGEMSITLDCDVLNA 129

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A++TGA+VAL      M         +  L G VAA+SCG++ G P++DLDY E
Sbjct: 130 DGGTRCASVTGAYVALSLAFHKM--VKAGVLKAVPLHGQVAAVSCGVVGGQPVLDLDYIE 187

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  + D+NFV+TD+G IVE+QG+AE A FS+  F AML LA+   A L  +Q+D I
Sbjct: 188 DSGAEADSNFVLTDAGGIVEIQGTAEGAPFSEADFSAMLGLARQGTAQLFTMQRDAI 244


>gi|241663552|ref|YP_002981912.1| ribonuclease PH [Ralstonia pickettii 12D]
 gi|240865579|gb|ACS63240.1| ribonuclease PH [Ralstonia pickettii 12D]
          Length = 238

 Score =  249 bits (635), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 130/239 (54%), Positives = 166/239 (69%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ +Q+R ++LTR  +++AEGS LV FGDT +L TA++  KVP   + +  GW+T
Sbjct: 1   MRPSGRQPDQLRPVTLTRNFTRHAEGSVLVCFGDTQVLCTASVLPKVPPHKKGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGRA+RSV DL ALG   + +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLRALGEHTLHLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-SQVLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA+VA +D +  M +   K QL    ++  VAA+S G++ G P++DLDY
Sbjct: 121 ADGGTRTASITGAFVAAYDAVSVMRE---KGQLVGNPIRDFVAAVSVGVVDGVPVLDLDY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS  D D N VMT SG  VEVQG+AE   FS+    A+L LA   I  LI LQK  +
Sbjct: 178 PEDSACDTDMNVVMTGSGGFVEVQGTAEGTPFSRAEMDALLGLADQGIRTLIGLQKQAL 236


>gi|330505631|ref|YP_004382500.1| ribonuclease PH [Pseudomonas mendocina NK-01]
 gi|328919917|gb|AEB60748.1| ribonuclease PH [Pseudomonas mendocina NK-01]
          Length = 239

 Score =  249 bits (635), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 122/234 (52%), Positives = 166/234 (70%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVESGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L+ ++         + LK  +AA+S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALIDALKVLK--KRGALKGEPLKQMIAAVSVGIYQGEPVLDLDYLE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  + D N VMT++G  +EVQG+AE A F  D F AML LA+  + ++ +LQK
Sbjct: 181 DSAAETDLNVVMTNAGGFIEVQGTAEGAPFQPDEFNAMLALAQKGMNEIFELQK 234


>gi|94309797|ref|YP_583007.1| ribonuclease PH [Cupriavidus metallidurans CH34]
 gi|166228306|sp|Q1LQ38|RNPH_RALME RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|93353649|gb|ABF07738.1| ribonuclease PH [Cupriavidus metallidurans CH34]
          Length = 238

 Score =  249 bits (635), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 129/239 (53%), Positives = 166/239 (69%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  + +R I+LTR+ +++AEGS L  FGDT +L TA++  KVP   + +  GW+T
Sbjct: 1   MRPSGRAADALRPITLTRQYTRHAEGSVLSAFGDTKVLCTASVLAKVPPHKKGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRA+RSV DL+ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTIHLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHM-EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTAAITGA+VA HD +  M  D   K   +  ++  VAA+S GM+ G P++DLDY
Sbjct: 121 ADGGTRTAAITGAFVAAHDAVSAMLRDGQIK---ASPIRDFVAAVSVGMVNGVPVLDLDY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS  D D N VMT SG  VEVQG+AE   FS+    AM  LA+  IA+L++ QK  +
Sbjct: 178 AEDSNCDTDMNVVMTGSGGFVEVQGTAEGTPFSRADLDAMTRLAEAGIAELVRHQKQAL 236


>gi|126734415|ref|ZP_01750162.1| ribonuclease PH [Roseobacter sp. CCS2]
 gi|126717281|gb|EBA14145.1| ribonuclease PH [Roseobacter sp. CCS2]
          Length = 235

 Score =  249 bits (635), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 125/239 (52%), Positives = 173/239 (72%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ N+MRE+S+   V+ +AEGSCL+K G+TH+L TAT++E+VP +++N+  GW+T
Sbjct: 1   MRPSGRQTNEMREVSIETGVTMHAEGSCLIKCGNTHVLCTATIDERVPPFLKNSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA +G Q GR+QEIQR+IGR+LR+ VD  AL  RQI++DCDVIQ
Sbjct: 61  AEYGMLPRATNTRMRREAKNG-QSGRTQEIQRLIGRSLRAGVDRVALSERQIVVDCDVIQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +Q +    +   +S  L   VAAISCG+  G  ++DLDY 
Sbjct: 120 ADGGTRCASITGGWVALKLAVQKLMKAGDV--ISDPLIDPVAAISCGIYAGQEVLDLDYP 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD NFVMT  G ++E+Q SAE +TF++     +++LA+  + +L  +Q   +S
Sbjct: 178 EDSEAGVDGNFVMT-GGKMIEIQMSAEGSTFTRAQMDGLVDLAEKGVGELTAIQLAAVS 235


>gi|256752250|ref|ZP_05493114.1| ribonuclease PH [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748902|gb|EEU61942.1| ribonuclease PH [Thermoanaerobacter ethanolicus CCSD1]
          Length = 261

 Score =  249 bits (635), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 121/241 (50%), Positives = 172/241 (71%), Gaps = 2/241 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ N++R I +TR  +K+AEGS L++ G+T ++ TA++E+KVP + + T  GWIT+
Sbjct: 3   RIDGREFNELRPIKITRNFNKFAEGSVLIEMGNTKVICTASIEDKVPPFQKGTGKGWITS 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  RE   GR  GR+ EIQR+IGR+LRSVVDL  LG + I IDCDVIQA
Sbjct: 63  EYGMLPRATETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLEVLGEKTIWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITG+++AL D L  + +  +  ++   LKG VAA+S G++ G  ++DL + E
Sbjct: 123 DGGTRTASITGSFIALADALNKLVEKGDIPKIP--LKGFVAAVSVGIVEGNELLDLSFQE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS   VD N VMTD G IVE+QG+ E   F++ +   +L+LA+  I  +IK+QK+V+S+ 
Sbjct: 181 DSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLTDLLSLAEYGIEQIIKIQKEVLSDI 240

Query: 242 V 242
           V
Sbjct: 241 V 241


>gi|146280858|ref|YP_001171011.1| ribonuclease PH [Pseudomonas stutzeri A1501]
 gi|166228304|sp|A4VGR8|RNPH_PSEU5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145569063|gb|ABP78169.1| ribonuclease PH [Pseudomonas stutzeri A1501]
 gi|327479126|gb|AEA82436.1| ribonuclease PH [Pseudomonas stutzeri DSM 4166]
          Length = 240

 Score =  248 bits (634), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 168/239 (70%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ TA++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTASIETGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + IDCDVIQA
Sbjct: 63  EYGMLPRATGERNQREAARGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VA+ D L+ ++      +    +K  +AA+S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVAVIDALKVLKK-RGGLKGGDPVKQMIAAVSVGIYQGEPVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMTD+G  +EVQG+AE A F  D   AML LA D +  L +LQ+  +++
Sbjct: 182 DSAAETDLNVVMTDAGGFIEVQGTAEGAPFHADELNAMLALAHDGVRQLFELQRAALAD 240


>gi|139438503|ref|ZP_01772019.1| Hypothetical protein COLAER_01011 [Collinsella aerofaciens ATCC
           25986]
 gi|133776042|gb|EBA39862.1| Hypothetical protein COLAER_01011 [Collinsella aerofaciens ATCC
           25986]
          Length = 241

 Score =  248 bits (634), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 124/238 (52%), Positives = 166/238 (69%), Gaps = 4/238 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R +GR  N++R + LTR V K+A GSCL +FGDT +L  AT+EE VP W +  K GW+TA
Sbjct: 8   RANGRAANELRPVKLTRGVMKHAHGSCLAEFGDTRVLCAATIEEGVPGWRKGAKAGWVTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP STG R KRE  + +  GRS EI+R+IGR+LR+VV++ ALG   + +DCDVIQA
Sbjct: 68  EYAMLPASTGKRCKREYANRK--GRSMEIERLIGRSLRTVVNMKALGEYTVTVDCDVIQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGAWVALHD L    +     ++   L G VAAIS G++ G  ++DLDY E
Sbjct: 126 DGGTRTASITGAWVALHDALAMWVEAGKIERIP--LTGQVAAISMGVVDGNTMLDLDYSE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G I+E+QG+ E+A F +    A+L+L    IA+LI+LQ+  ++
Sbjct: 184 DSHAEVDMNLVATDTGEIIELQGTGEQAPFDRKRLNALLDLGDKGIAELIELQRQALA 241


>gi|83648974|ref|YP_437409.1| ribonuclease PH [Hahella chejuensis KCTC 2396]
 gi|123530517|sp|Q2S8P0|RNPH_HAHCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|83637017|gb|ABC32984.1| ribonuclease PH [Hahella chejuensis KCTC 2396]
          Length = 238

 Score =  248 bits (634), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 125/240 (52%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ +Q R+I +T+  +K+AEGS LV+FGDT ++ TAT+E  VP ++R    GW+T
Sbjct: 1   MRPSGRQPDQTRDIKITKNYTKHAEGSVLVEFGDTKVICTATVENGVPRFLRGEDQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ VDL  +    I IDCDVIQ
Sbjct: 61  AEYGMLPRATGTRNQREAARGKQGGRTLEIQRLIGRSLRAAVDLKKMPDISITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +VA+ D +  +     + + + +L   VAAIS G+  G P+VDLDY 
Sbjct: 121 ADGGTRTASITGGFVAMADAINSLL-AKGQLKNNPILH-KVAAISVGVYEGVPVVDLDYD 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMTD    +EVQG+AE A FS     AML+LA   I  L   Q++V+ +
Sbjct: 179 EDSKAETDMNVVMTDQDGFIEVQGTAEAAPFSSAELTAMLDLAGKGIRQLFVAQEEVLQS 238


>gi|254475610|ref|ZP_05088996.1| ribonuclease PH [Ruegeria sp. R11]
 gi|214029853|gb|EEB70688.1| ribonuclease PH [Ruegeria sp. R11]
          Length = 227

 Score =  248 bits (634), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 122/225 (54%), Positives = 161/225 (71%), Gaps = 2/225 (0%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           MR +S+    +K+AEGSCL+K GDTH+L TAT+E++VP +I+ T  GW+TAEYGMLPR+T
Sbjct: 1   MRAVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGTGLGWVTAEYGMLPRAT 60

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
             R++REA  G+QGGR+ EIQR+IGRALR+ VD  ALG RQI IDCDV+QADGGTR A+I
Sbjct: 61  NTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRVALGERQISIDCDVLQADGGTRCASI 120

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
           TG WVAL   +  +    +       L   VAA+SCG+  G P++DLDY EDS   VD N
Sbjct: 121 TGGWVALRLAVNKLMKAGD--VTIDPLVDPVAAVSCGIYAGQPVLDLDYPEDSEAGVDGN 178

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           F+MT SG ++EVQ SAE + FS+D    +++LA    A+L ++QK
Sbjct: 179 FIMTGSGKLIEVQMSAEGSVFSRDQMNELMDLATKGTAELAEIQK 223


>gi|251791523|ref|YP_003006244.1| ribonuclease PH [Dickeya zeae Ech1591]
 gi|247540144|gb|ACT08765.1| ribonuclease PH [Dickeya zeae Ech1591]
          Length = 238

 Score =  248 bits (634), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 124/240 (51%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++ TR  +K+AEGS LV+FGDT +L  AT+EE VP +++    GWIT
Sbjct: 1   MRPTGRSAQQIRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL+ LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLNKLGEYTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +     K + S  LKG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNGLV-AGGKLKASP-LKGMVAAVSVGIVKGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G ++EVQG+AE   FS D   ++L LA+  I D+++ QK  +++
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLSLLALARQGIEDIVRAQKAALAD 238


>gi|167038078|ref|YP_001665656.1| ribonuclease PH [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167039210|ref|YP_001662195.1| ribonuclease PH [Thermoanaerobacter sp. X514]
 gi|300915534|ref|ZP_07132845.1| ribonuclease PH [Thermoanaerobacter sp. X561]
 gi|307267211|ref|ZP_07548716.1| ribonuclease PH [Thermoanaerobacter wiegelii Rt8.B1]
 gi|307723791|ref|YP_003903542.1| ribonuclease PH [Thermoanaerobacter sp. X513]
 gi|320116486|ref|YP_004186645.1| ribonuclease PH [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|326390883|ref|ZP_08212434.1| ribonuclease PH [Thermoanaerobacter ethanolicus JW 200]
 gi|226736946|sp|B0KBM5|RNPH_THEP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736947|sp|B0K3T4|RNPH_THEPX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166853450|gb|ABY91859.1| ribonuclease PH [Thermoanaerobacter sp. X514]
 gi|166856912|gb|ABY95320.1| ribonuclease PH [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|300888432|gb|EFK83583.1| ribonuclease PH [Thermoanaerobacter sp. X561]
 gi|306917760|gb|EFN48029.1| ribonuclease PH [Thermoanaerobacter wiegelii Rt8.B1]
 gi|307580852|gb|ADN54251.1| ribonuclease PH [Thermoanaerobacter sp. X513]
 gi|319929577|gb|ADV80262.1| ribonuclease PH [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|325993031|gb|EGD51472.1| ribonuclease PH [Thermoanaerobacter ethanolicus JW 200]
          Length = 261

 Score =  248 bits (634), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 121/241 (50%), Positives = 172/241 (71%), Gaps = 2/241 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ N++R I +TR  +K+AEGS L++ G+T ++ TA++E+KVP + + T  GWIT+
Sbjct: 3   RIDGREFNELRPIKITRNFNKFAEGSVLIEMGNTKVICTASIEDKVPPFQKGTGKGWITS 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  RE   GR  GR+ EIQR+IGR+LRSVVDL  LG + I IDCDVIQA
Sbjct: 63  EYGMLPRATETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLDVLGEKTIWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITG+++AL D L  + +  +  ++   LKG VAA+S G++ G  ++DL + E
Sbjct: 123 DGGTRTASITGSFIALADALNKLVEKGDIPKIP--LKGFVAAVSVGIVEGNELLDLSFQE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS   VD N VMTD G IVE+QG+ E   F++ +   +L+LA+  I  +IK+QK+V+S+ 
Sbjct: 181 DSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLTDLLSLAEYGIEQIIKIQKEVLSDI 240

Query: 242 V 242
           V
Sbjct: 241 V 241


>gi|289577832|ref|YP_003476459.1| ribonuclease PH [Thermoanaerobacter italicus Ab9]
 gi|289527545|gb|ADD01897.1| ribonuclease PH [Thermoanaerobacter italicus Ab9]
          Length = 261

 Score =  248 bits (633), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 123/242 (50%), Positives = 174/242 (71%), Gaps = 4/242 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ N++R I +TR  +K+AEGS L++ G+T ++ TA++E+KVP + + T  GWIT+
Sbjct: 3   RIDGREFNELRPIKITRNFNKFAEGSVLIEMGETKVICTASIEDKVPPFQKGTGKGWITS 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  RE   GR  GR+ EIQR+IGR+LRSVVDL  LG + I IDCDVIQA
Sbjct: 63  EYGMLPRATETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLDVLGEKTIWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTA+ITG+++AL D L  + +   K  +S++ LKG VAA+S G++ G  ++DL + 
Sbjct: 123 DGGTRTASITGSFIALADALNKLVE---KGDISKIPLKGFVAAVSVGIVDGNKLLDLSFQ 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VMTD G IVE+QG+ E   F++ +   +L+LA+  I  +IK+QK+V+S+
Sbjct: 180 EDSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLSDLLSLAEYGIEQIIKIQKEVLSD 239

Query: 241 EV 242
            V
Sbjct: 240 IV 241


>gi|163737986|ref|ZP_02145402.1| heat-inducible transcription repressor [Phaeobacter gallaeciensis
           BS107]
 gi|161388602|gb|EDQ12955.1| heat-inducible transcription repressor [Phaeobacter gallaeciensis
           BS107]
          Length = 227

 Score =  248 bits (633), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 120/225 (53%), Positives = 165/225 (73%), Gaps = 2/225 (0%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           MR +S+    +K+AEGSCL+K GDTH+L TAT+E++VP +I+ +  GW+TAEYGMLPR+T
Sbjct: 1   MRAVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVTAEYGMLPRAT 60

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
             R++REA  G+QGGR+ EIQR+IGRALR+ VD  ALG RQI IDCDV+QADGGTR A+I
Sbjct: 61  NTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRVALGERQISIDCDVLQADGGTRCASI 120

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
           TG WVAL   +  +   + + ++  ++   VAA+SCG+  G P++DLDY EDS   VD N
Sbjct: 121 TGGWVALRLAVNKLMK-TGEVKIDPLVD-PVAAVSCGIYAGQPVLDLDYPEDSEAGVDGN 178

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           F+MT SG ++EVQ SAE + FS++    +++LA    A+L +LQK
Sbjct: 179 FIMTGSGQLIEVQMSAEGSMFSREQMNTLMDLATKGTAELAELQK 223


>gi|86146528|ref|ZP_01064850.1| ribonuclease PH [Vibrio sp. MED222]
 gi|218708240|ref|YP_002415861.1| ribonuclease PH [Vibrio splendidus LGP32]
 gi|254808602|sp|B7VHJ7|RNPH_VIBSL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|85835585|gb|EAQ53721.1| ribonuclease PH [Vibrio sp. MED222]
 gi|218321259|emb|CAV17209.1| Ribonuclease PH [Vibrio splendidus LGP32]
          Length = 238

 Score =  248 bits (633), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 120/240 (50%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA SG+QGGR+ EIQR+I R+LR+VVDL  +G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKVMGEIMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D +  +   S K +    +KGHVAA+S G++    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAINSLL-ASGKLK-KNPMKGHVAAVSVGIVGAQALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +    +L LA   IAD+++ QK  +++
Sbjct: 179 EDSAADTDMNVVMTEDGKMIEIQGTAEGEPFSHEELMQLLALANKGIADIVEAQKAALAD 238


>gi|260770721|ref|ZP_05879651.1| ribonuclease PH [Vibrio furnissii CIP 102972]
 gi|260614302|gb|EEX39491.1| ribonuclease PH [Vibrio furnissii CIP 102972]
 gi|315178484|gb|ADT85398.1| ribonuclease PH [Vibrio furnissii NCTC 11218]
          Length = 238

 Score =  248 bits (632), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 120/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNNRAADQVRPIQITRHYTAYAEGSVLVEFGNTKVLCNATVEEGVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLEAMGELMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D    +   ++       +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFDKL--VADGKLKKNPMKGHVAAVSVGILGQDVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++  QK  + N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLDLLAVAKKGIADIVSAQKASLEN 238


>gi|107104436|ref|ZP_01368354.1| hypothetical protein PaerPA_01005513 [Pseudomonas aeruginosa PACS2]
          Length = 239

 Score =  248 bits (632), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 125/238 (52%), Positives = 164/238 (68%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T + E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R +REA  G+QGGR+ EIQR+IGR+LR+ +DLS LG   + IDCDVIQA
Sbjct: 63  EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++           LK  VAA+S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGATVALIDALAVLK--KRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  + D N VMTD+G  +EVQG+AE A F  D   AML LA+  + +L +LQ+  ++
Sbjct: 181 DSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPDELNAMLELAQQGMQELFELQRAALA 238


>gi|260774477|ref|ZP_05883391.1| ribonuclease PH [Vibrio metschnikovii CIP 69.14]
 gi|260610604|gb|EEX35809.1| ribonuclease PH [Vibrio metschnikovii CIP 69.14]
          Length = 238

 Score =  248 bits (632), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEETVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLKAMGEIMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+GA VA+ D   H+     K + +  +K HVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTAAISGASVAMADAFAHLV-AKGKLK-ANPMKSHVAAVSVGILGENILCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT+ G ++E+QG+AE   FS +   A+L  A+  I D++  QK  ++
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLALLASAQKGIVDIVAAQKAALA 237


>gi|58425360|gb|AAW74397.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 305

 Score =  248 bits (632), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 124/239 (51%), Positives = 166/239 (69%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R + + R  +++AEGS LV FGDTH+L TA++E +VP ++R    GW+TA
Sbjct: 69  RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTHVLCTASVENRVPNFLRGKGEGWVTA 128

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 129 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 188

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTAAITGA+VAL D +  +     + ++ +  L G VAA+S G+  G P++DLDY 
Sbjct: 189 DGGTRTAAITGAYVALADAVNLL---LKRGEIKKHPLIGAVAAVSVGIYRGEPVLDLDYP 245

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  + DL  LQ+  ++
Sbjct: 246 EDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGDLFALQRAALA 304


>gi|149189226|ref|ZP_01867513.1| ribonuclease PH [Vibrio shilonii AK1]
 gi|148836980|gb|EDL53930.1| ribonuclease PH [Vibrio shilonii AK1]
          Length = 238

 Score =  248 bits (632), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 120/235 (51%), Positives = 164/235 (69%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G   + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMRREASSGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D   H+     K + +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFAHLV-AKGKLK-ANPMKGHVAAVSVGILGEDILCDLEYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  D D N VMT+ G ++E+QG+AE   F+     A+L  A   IA+++  QK
Sbjct: 179 EDSAADTDMNVVMTEDGRMIEIQGTAEGEPFTHKELMALLESANKGIAEIVAAQK 233


>gi|300714644|ref|YP_003739447.1| ribonuclease PH [Erwinia billingiae Eb661]
 gi|299060480|emb|CAX57587.1| Ribonuclease PH [Erwinia billingiae Eb661]
          Length = 238

 Score =  247 bits (631), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 125/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GW+T
Sbjct: 1   MRPAGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATIEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ +DL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAALDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L H+     K + +  +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNHLVSI-GKLK-TNPMKGMVAAISVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G ++EVQG+AE   FS D    +L LA+  I  LI  QK  + +
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLQLLALARGGIDSLILAQKAALKD 238


>gi|84622697|ref|YP_450069.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|161899009|ref|YP_199782.2| ribonuclease PH [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188578263|ref|YP_001915192.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|123522908|sp|Q2P6N2|RNPH_XANOM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736951|sp|B2SLL1|RNPH_XANOP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|84366637|dbj|BAE67795.1| Ribonuclease PH [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188522715|gb|ACD60660.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 241

 Score =  247 bits (631), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 124/239 (51%), Positives = 166/239 (69%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R + + R  +++AEGS LV FGDTH+L TA++E +VP ++R    GW+TA
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTHVLCTASVENRVPNFLRGKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTAAITGA+VAL D +  +     + ++ +  L G VAA+S G+  G P++DLDY 
Sbjct: 125 DGGTRTAAITGAYVALADAVNLL---LKRGEIKKHPLIGAVAAVSVGIYRGEPVLDLDYP 181

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  + DL  LQ+  ++
Sbjct: 182 EDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGDLFALQRAALA 240


>gi|219871463|ref|YP_002475838.1| ribonuclease PH [Haemophilus parasuis SH0165]
 gi|254808589|sp|B8F6D8|RNPH_HAEPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|219691667|gb|ACL32890.1| ribonuclease PH [Haemophilus parasuis SH0165]
          Length = 244

 Score =  247 bits (631), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q R + +TR  ++YAEGS LV+FG+T +L  AT+EE VP +++  + GW+T
Sbjct: 1   MRPNNRPVDQTRPVKITRNYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+QGGR+ EIQR+I R+LR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VALHD +  +   ++       +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALHDAINKL--IADGLLKENPMKGLVAAISVGIVDGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G +VEVQG+AE   FS      +L+LA+  I  L + Q+  ++
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAQKGIEQLFEAQRQALN 237


>gi|88705452|ref|ZP_01103163.1| ribonuclease PH (RNase PH) [Congregibacter litoralis KT71]
 gi|88700542|gb|EAQ97650.1| ribonuclease PH (RNase PH) [Congregibacter litoralis KT71]
          Length = 269

 Score =  247 bits (631), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 125/239 (52%), Positives = 169/239 (70%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R+IS+ R+ + +AEGS LV FG+T ++ TA++E+ VP ++R    GWITA
Sbjct: 32  RPSGRAPDQLRDISIERQFTCHAEGSVLVSFGNTRVICTASVEDSVPRFLRGKNSGWITA 91

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG+R+ REA  G+QGGR+QEIQR+IGR+LR+ VDLS LG   I +DCDVIQA
Sbjct: 92  EYGMLPRSTGSRMGREAARGKQGGRTQEIQRLIGRSLRAAVDLSKLGEHTITLDCDVIQA 151

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  ++   +K   +  L+  VA++S G+  G  ++DLDY E
Sbjct: 152 DGGTRTASITGAFVALVDAINGLQ--RDKKISTDPLRHFVASVSVGVYQGEAVLDLDYPE 209

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  D D N VM + G  +EVQG+AE A FS+     ML+LA   IA LI  Q+  ++ 
Sbjct: 210 DSKADTDLNVVMAEGGEFIEVQGTAEAAPFSRTDLDKMLDLASGGIATLIDCQRAALAT 268


>gi|167854865|ref|ZP_02477642.1| ribonuclease PH [Haemophilus parasuis 29755]
 gi|167854044|gb|EDS25281.1| ribonuclease PH [Haemophilus parasuis 29755]
          Length = 244

 Score =  247 bits (631), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q R + +TR  ++YAEGS LV+FG+T +L  AT+EE VP +++  + GW+T
Sbjct: 1   MRPNNRPVDQTRPVKITRNYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+QGGR+ EIQR+I R+LR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VALHD +  +   ++       +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALHDAINKL--IADGLLKENPMKGLVAAISVGIVDGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G +VEVQG+AE   FS      +L+LA+  I  L + Q+  ++
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAQKGIEQLFEAQRQALN 237


>gi|289625446|ref|ZP_06458400.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289646372|ref|ZP_06477715.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298484821|ref|ZP_07002921.1| Ribonuclease PH [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298160675|gb|EFI01696.1| Ribonuclease PH [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330866527|gb|EGH01236.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 240

 Score =  247 bits (631), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 121/239 (50%), Positives = 167/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L+ ++      +    LK  +AA+S GM  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALADALKVIKK-RGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  +   AML LA+  I +L +LQ+  +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGITELFELQRAALAD 240


>gi|161611344|ref|YP_272506.2| ribonuclease PH [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320322255|gb|EFW78351.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331904|gb|EFW87842.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330873180|gb|EGH07329.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 240

 Score =  247 bits (631), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 167/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L+ ++      +    LK  +AA+S GM  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALADALKVIKK-RGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYPE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  +   AML LA+  + +L +LQ+  +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQRAALAD 240


>gi|329896532|ref|ZP_08271590.1| Ribonuclease PH [gamma proteobacterium IMCC3088]
 gi|328921749|gb|EGG29122.1| Ribonuclease PH [gamma proteobacterium IMCC3088]
          Length = 240

 Score =  247 bits (631), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 125/238 (52%), Positives = 170/238 (71%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGRQ +++REI+++R  + +AEGS LV+FG T +L  A++ E VP ++R +  GWITA
Sbjct: 3   RPSGRQPHELREITISRNYTCHAEGSVLVEFGRTKVLCNASVSEGVPRFLRGSGQGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG+R+ REA  G+QGGR+ EIQR+IGR+LR+VVDL  LG   I +DCDVIQA
Sbjct: 63  EYGMLPRSTGSRMDREAARGKQGGRTLEIQRLIGRSLRAVVDLKRLGEYTITVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++   +K   +  L   VA++S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGACVALVDALNGLQ--RDKALKTDPLNQLVASVSVGVYQGVPVLDLDYPE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS+ D D N VM + G ++EVQG+AE ATF +     ML+LA+  I DL + Q+  ++
Sbjct: 181 DSSADTDMNVVMGEDGGLIEVQGTAEGATFDRATLNQMLDLAEAGIRDLFEAQRKALA 238


>gi|254428098|ref|ZP_05041805.1| ribonuclease PH [Alcanivorax sp. DG881]
 gi|196194267|gb|EDX89226.1| ribonuclease PH [Alcanivorax sp. DG881]
          Length = 238

 Score =  247 bits (631), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 124/235 (52%), Positives = 161/235 (68%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+RE+S TR  + +AEGS LV FG T +L TA++EE VP +++    GW+T
Sbjct: 1   MRPSGRAPDQLRELSFTRNYTVHAEGSVLVAFGGTKVLCTASVEEGVPRFLKGKGQGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST  R  REA  G+QGGR+ EIQR+IGR+LR+ VD+ ALG R I +DCDV+Q
Sbjct: 61  AEYSMLPRSTHTRSGREATRGKQGGRTLEIQRLIGRSLRAAVDMKALGERTIYLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D   H+     K   S  L G V A+S GM  G P++DLDY 
Sbjct: 121 ADGGTRTASISGACVALVDAFTHL--LETKKIKSDPLTGLVGAVSVGMYEGAPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS    D N VMT  G  +E+QGSAE A F+++   ++L LA+  I ++IK Q+
Sbjct: 179 EDSNAGTDMNVVMTQQGGFIEIQGSAEGAPFTREQSDSLLGLAEKGIGEIIKAQQ 233


>gi|30248295|ref|NP_840365.1| 3' exoribonuclease [Nitrosomonas europaea ATCC 19718]
 gi|61216039|sp|Q82XJ4|RNPH_NITEU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|30138181|emb|CAD84187.1| 3' exoribonuclease family [Nitrosomonas europaea ATCC 19718]
          Length = 241

 Score =  247 bits (631), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 118/239 (49%), Positives = 168/239 (70%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R + R   QMR + + R   ++AEGS L+++G+T ++ TA++ EKVP +++    GW+TA
Sbjct: 3   RCNNRAPAQMRPVRIIRHYVRHAEGSVLIEYGETRVICTASVIEKVPPFLKGAGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R++REA  G+Q GR+ EIQR+IGRALRS++DL  LG R I +DCDVIQA
Sbjct: 63  EYGMLPRSTGERMQREAAKGKQSGRTMEIQRLIGRALRSILDLEKLGERTIQMDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL+D + ++   + +      ++ HVAA+S G+L G P++DLDY E
Sbjct: 123 DGGTRTASITGAFVALYDAIDYLR--AERMISQNPIRDHVAAVSVGILKGQPLLDLDYLE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  D D N VMT S  +VEVQG+AE+  FS+     MLN+A+  + +L  +Q+  +  
Sbjct: 181 DSGCDTDLNVVMTGSLGLVEVQGTAEKVVFSRQELDVMLNMAQQGLQELFDVQRKALET 239


>gi|157963655|ref|YP_001503689.1| ribonuclease PH [Shewanella pealeana ATCC 700345]
 gi|189043776|sp|A8H9B7|RNPH_SHEPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157848655|gb|ABV89154.1| ribonuclease PH [Shewanella pealeana ATCC 700345]
          Length = 237

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 123/239 (51%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q R +++TR+ + +AEGS LV+FGDT +L TA+ EE VP +++    GW+T
Sbjct: 1   MRPSNRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+Q GR+QEIQR+IGR+LR+ VD+  LG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAARGKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D L            +  LK  +AA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G I+E+QG+AE   FS +   ++L+LAK  I +++ +QK  +S
Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLSLLDLAKHGIREIVDIQKASLS 237


>gi|241762326|ref|ZP_04760406.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241373120|gb|EER62759.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 234

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 164/239 (68%), Gaps = 5/239 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R +S+    +++AEGSCL+ FGDT +L TA+LEE++P W+R    GW+T
Sbjct: 1   MRPSGRTPDQLRSLSIETGFTRHAEGSCLISFGDTRVLVTASLEERLPSWLRGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+Q GR+QEIQR+IGR+LR+ +DL  LG RQI IDCDV+Q
Sbjct: 61  AEYGMLPRSTHSRTNREAARGKQSGRTQEIQRLIGRSLRAGIDLKKLGERQITIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+G WVAL   +  +   S +     ++   VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASISGGWVALRLAVNKLL-ASGQLTEDPIIS-QVAAVSCGISQGVPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST + DANFVM     ++EVQ SAE A + ++    +L LA+     +   QK  ++
Sbjct: 179 EDSTAEADANFVMMGDSRLIEVQASAEGAPYDEE---GLLRLARMGCQQIFAEQKKAVA 234


>gi|330812597|ref|YP_004357059.1| ribonuclease PH [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327380705|gb|AEA72055.1| ribonuclease PH [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 240

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 121/239 (50%), Positives = 167/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L+ ++      +    LK  +AA+S GM  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALVDALKVIKK-RGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  +   AML LAK  + ++ +LQK  +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLELAKKGMNEIFELQKAALAD 240


>gi|121587563|ref|ZP_01677329.1| ribonuclease PH [Vibrio cholerae 2740-80]
 gi|121548201|gb|EAX58271.1| ribonuclease PH [Vibrio cholerae 2740-80]
          Length = 229

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 122/231 (52%), Positives = 162/231 (70%), Gaps = 4/231 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 1   MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA VAL D   H+     K QL +  +KGHVAA+S G+L    + DL+Y
Sbjct: 121 ADGGTRTASITGASVALADAFAHL---IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
            EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD+
Sbjct: 178 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADM 228


>gi|226311377|ref|YP_002771271.1| ribonuclease PH [Brevibacillus brevis NBRC 100599]
 gi|254808581|sp|C0ZAF8|RNPH_BREBN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226094325|dbj|BAH42767.1| ribonuclease PH [Brevibacillus brevis NBRC 100599]
          Length = 253

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 125/240 (52%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR  +Q+R +++TR   K+AEGSCL++ GDT ++ TATLEE+VP ++R    GWIT
Sbjct: 1   MRVDGRAHDQLRPVTITRNYIKHAEGSCLIEVGDTKVICTATLEERVPPFMRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+ GGR+ EIQR+IGRALRSVV+L A+G R I +DCDVIQ
Sbjct: 61  AEYSMLPRATATRNARESSKGKVGGRTMEIQRLIGRALRSVVNLEAMGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA+ D +Q + D     QL   L   +AA S G++    ++DL+Y 
Sbjct: 121 ADGGTRTASITGAFVAMVDAMQKLVDSGTWKQLP--LNDFLAATSVGVVGEEAVLDLNYK 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDST  VD N VMT  G  VE+QG+ E A FS +    M++LAK  I +LI  QK+ +++
Sbjct: 179 EDSTAIVDMNVVMTGKGKFVELQGTGEDAPFSPEQLQEMISLAKVGIDNLIHSQKEALAD 238


>gi|330964252|gb|EGH64512.1| ribonuclease PH [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 240

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 167/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L+ ++      +    LK  +AA+S GM  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALADALKVLKK-RGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  +   AML LA+  + +L +LQ+  +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQRAALAD 240


>gi|254515846|ref|ZP_05127906.1| ribonuclease PH [gamma proteobacterium NOR5-3]
 gi|219675568|gb|EED31934.1| ribonuclease PH [gamma proteobacterium NOR5-3]
          Length = 240

 Score =  246 bits (629), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 124/238 (52%), Positives = 170/238 (71%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R+IS+ R+ + +AEGS LV FG+T ++ TA++E+ VP ++R    GWITA
Sbjct: 3   RPSGRATDQLRDISIERQFTCHAEGSVLVSFGNTRVICTASVEDSVPRFLRGKNSGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG+R+ REA  G+QGGR+QEIQR+IGR+LR+ VDLS LG   I +DCDVIQA
Sbjct: 63  EYGMLPRSTGSRMGREAARGKQGGRTQEIQRLIGRSLRAAVDLSKLGEHTITLDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  ++   +K   +  L+  VA++S G+  G  ++DLDY E
Sbjct: 123 DGGTRTASITGAFVALVDAINGLQ--RDKKISTDPLRHFVASVSVGVYQGEAVLDLDYIE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VM + G  +EVQG+AE A FS+     ML+LA   I+ LI+ Q+  ++
Sbjct: 181 DSKADTDLNVVMAEHGEFIEVQGTAEAAPFSRTELDQMLDLASGGISTLIECQRQALA 238


>gi|149927822|ref|ZP_01916073.1| ribonuclease PH [Limnobacter sp. MED105]
 gi|149823444|gb|EDM82675.1| ribonuclease PH [Limnobacter sp. MED105]
          Length = 243

 Score =  246 bits (629), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 123/234 (52%), Positives = 165/234 (70%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR    +R ISL R  +K+AEGS +V+FGDTH+L T ++E+KVP +++    GW+TA
Sbjct: 7   RPDGRNPRALRNISLERNYTKHAEGSVMVRFGDTHVLCTCSVEDKVPGFLKGKNQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST +R+ REA  G+Q GR+QEIQR+IGRALR+ VDL+ LG R + IDCDVIQA
Sbjct: 67  EYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRAAVDLNKLGERTLKIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VA+ D +  +   +N       +K  VAA+S G++ G  ++DL+Y E
Sbjct: 127 DGGTRTASITGAMVAVADAIGKL--IANGALPENPIKQFVAAVSVGVVNGQVVLDLNYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DST + D N VMT+ G  VEVQG+AE   FS++    ML+ A   I +L++LQK
Sbjct: 185 DSTCETDLNVVMTEKGGFVEVQGTAEGDAFSREELNGMLDSAAAGIIELVRLQK 238


>gi|146309400|ref|YP_001189865.1| ribonuclease PH [Pseudomonas mendocina ymp]
 gi|166228302|sp|A4Y0L7|RNPH_PSEMY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145577601|gb|ABP87133.1| RNAse PH [Pseudomonas mendocina ymp]
          Length = 239

 Score =  246 bits (629), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 120/234 (51%), Positives = 167/234 (71%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVESGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L+ ++   +     + LK  +AA+S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALIDALKVLKKRGS--LKGEPLKQMIAAVSVGIYQGEPVLDLDYLE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  + D N VMT++G  +EVQG+AE A F  + F AML LA+  + ++ +LQK
Sbjct: 181 DSAAETDLNVVMTNAGGFIEVQGTAEGAPFQPEEFNAMLALAQKGMNEIFELQK 234


>gi|296284093|ref|ZP_06862091.1| ribonuclease PH [Citromicrobium bathyomarinum JL354]
          Length = 237

 Score =  246 bits (629), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 118/211 (55%), Positives = 151/211 (71%), Gaps = 2/211 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +QMR IS+    +K+AEGSCL+ FGDT +L TA++E  VP W+R    GW+T
Sbjct: 1   MRPSGRAPDQMRAISIETGFTKHAEGSCLISFGDTRVLCTASVENSVPPWMRGKGAGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            EY MLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI +DCDVIQ
Sbjct: 61  GEYSMLPRATHTRGSREAARGKQSGRTQEIQRLIGRSLRAVVDMKKLGERQITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+GAWVAL   +  ++   +   L   + G +AAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAISGAWVALRLAIDGLK--KSGAILEDPITGKIAAISCGVYKGTPVLDLDYD 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
           EDS+ D DANFV+ + G I EVQ +AE A +
Sbjct: 179 EDSSADADANFVLIEGGKIAEVQATAEGAAY 209


>gi|103485749|ref|YP_615310.1| ribonuclease PH [Sphingopyxis alaskensis RB2256]
 gi|123380170|sp|Q1GWJ5|RNPH_SPHAL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|98975826|gb|ABF51977.1| RNAse PH [Sphingopyxis alaskensis RB2256]
          Length = 238

 Score =  246 bits (628), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 121/215 (56%), Positives = 157/215 (73%), Gaps = 4/215 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +QMR I++    + +AEGS LV FG+T +L TA++EEKVP ++R    GW+T
Sbjct: 1   MRPSGRAADQMRPIAIETNFTIHAEGSVLVSFGNTRVLVTASVEEKVPPFLRGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQ
Sbjct: 61  AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDMQKLGERQIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+I+GAWVAL   +  + +     QL++  +   VAAISCG+  G P++DLDY
Sbjct: 121 ADGGTRTASISGAWVALRLAVDKLIEAK---QLTEDPIVDSVAAISCGIYKGTPVLDLDY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
            EDS  + D NFV+T  G IVEVQ SAE AT+ ++
Sbjct: 178 DEDSVAEADGNFVLTGKGQIVEVQASAEGATYDEE 212


>gi|118594148|ref|ZP_01551495.1| tRNA nucleotidyltransferase [Methylophilales bacterium HTCC2181]
 gi|118439926|gb|EAV46553.1| tRNA nucleotidyltransferase [Methylophilales bacterium HTCC2181]
          Length = 240

 Score =  246 bits (628), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 118/238 (49%), Positives = 163/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R I   R  +K+AEGS LVK GDTH++  A++EE VP +++    GW+T
Sbjct: 1   MRASNRNADELRPIEFIRSYTKHAEGSVLVKCGDTHVICNASIEENVPSFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ RE+  G+Q GR+QEIQR+IGR+LR+++DL  LG R I IDCDVIQ
Sbjct: 61  AEYGMLPRSTSSRMGRESSRGKQSGRTQEIQRLIGRSLRAIIDLKKLGERTIFIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+G++VALHD ++ +   SNK      +   +AAIS G+     ++DLDY 
Sbjct: 121 ADGGTRTASISGSYVALHDAIEFL--LSNKKITESPIIDSIAAISAGIKGADILLDLDYS 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  D D NFVMT  G  VE+QG+AE   F++D    + N+A   I  +I +Q + +
Sbjct: 179 EDSECDTDMNFVMTGKGSFVEIQGTAEGIPFTKDEMDQLTNVASKGIQSIINIQSEAL 236


>gi|297618203|ref|YP_003703362.1| ribonuclease PH [Syntrophothermus lipocalidus DSM 12680]
 gi|297146040|gb|ADI02797.1| ribonuclease PH [Syntrophothermus lipocalidus DSM 12680]
          Length = 241

 Score =  246 bits (628), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 124/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  ++ R I++    +K+A GS L++ GDT ++ TA++E+KVP +++ T  GW+TA
Sbjct: 3   RTSGRAFDEPRPINIITGYTKFAPGSVLIETGDTRVICTASVEDKVPPFLKGTGTGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R  RE   GR  GR+ EIQR+IGRALR+VVD+SALG R + IDCDVIQA
Sbjct: 63  EYSMLPGSTPTRTAREVTRGRVSGRTSEIQRLIGRALRAVVDMSALGERTVWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL+  +Q +++     +L   +  +VAA S G++ G P++DL+YGE
Sbjct: 123 DGGTRTASITGAFVALYLAMQKLKESGIIERLP--VTDYVAATSVGIVRGIPLLDLEYGE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  +VD N VMT+SG  VE+QG+AE   FSQD    +L LAK  I+ LI  QK V+  E
Sbjct: 181 DSEAEVDMNVVMTESGKFVEIQGTAENNPFSQDELDELLRLAKKGISILIAKQKAVLGAE 240


>gi|84386442|ref|ZP_00989470.1| ribonuclease PH [Vibrio splendidus 12B01]
 gi|84378866|gb|EAP95721.1| ribonuclease PH [Vibrio splendidus 12B01]
          Length = 238

 Score =  246 bits (628), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 119/240 (49%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA SG+QGGR+ EIQR+I R+LR+VVDL  +G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKVMGEIMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D +  +   S K +    +KGHVAA+S G++    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAINSLL-ASGKLK-KNPMKGHVAAVSVGIVGAQALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +    +L LA   I D+++ QK  +++
Sbjct: 179 EDSAADTDMNVVMTEDGKMIEIQGTAEGEPFSHEELMQLLALANKGITDIVEAQKAALAD 238


>gi|297544117|ref|YP_003676419.1| ribonuclease PH [Thermoanaerobacter mathranii subsp. mathranii str.
           A3]
 gi|296841892|gb|ADH60408.1| ribonuclease PH [Thermoanaerobacter mathranii subsp. mathranii str.
           A3]
          Length = 259

 Score =  246 bits (628), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 119/237 (50%), Positives = 169/237 (71%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ N++R I +TR  +K+AEGS L++ G+T ++ TA++E+KVP + + T  GWIT+
Sbjct: 3   RIDGREFNELRPIKITRNFNKFAEGSVLIEMGETKVICTASIEDKVPPFQKGTGKGWITS 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  RE   GR  GR+ EIQR+IGR+LRSVVDL  LG + I IDCDVIQA
Sbjct: 63  EYGMLPRATETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLEVLGEKTIWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITG+++AL D L  + +  +  ++   LKG VAA+S G++ G  ++DL + E
Sbjct: 123 DGGTRTASITGSFIALADALNKLVEKGDIPKIP--LKGFVAAVSVGIVDGNKLLDLSFQE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS   VD N VMTD G IVE+QG+ E   F++ +   +L+LA+  I  +IK+QK+V+
Sbjct: 181 DSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLSDLLSLAEYGIEQIIKIQKEVL 237


>gi|66043483|ref|YP_233324.1| ribonuclease PH [Pseudomonas syringae pv. syringae B728a]
 gi|257481756|ref|ZP_05635797.1| ribonuclease PH [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|302189241|ref|ZP_07265914.1| ribonuclease PH [Pseudomonas syringae pv. syringae 642]
 gi|75503908|sp|Q4ZZY6|RNPH_PSEU2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|63254190|gb|AAY35286.1| Ribonuclease PH [Pseudomonas syringae pv. syringae B728a]
 gi|330876506|gb|EGH10655.1| ribonuclease PH [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330890924|gb|EGH23585.1| ribonuclease PH [Pseudomonas syringae pv. mori str. 301020]
 gi|330895695|gb|EGH27987.1| ribonuclease PH [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330941124|gb|EGH44004.1| ribonuclease PH [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330957289|gb|EGH57549.1| ribonuclease PH [Pseudomonas syringae pv. maculicola str. ES4326]
 gi|330972206|gb|EGH72272.1| ribonuclease PH [Pseudomonas syringae pv. aceris str. M302273PT]
 gi|330977343|gb|EGH77296.1| ribonuclease PH [Pseudomonas syringae pv. aptata str. DSM 50252]
 gi|330986869|gb|EGH84972.1| ribonuclease PH [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331009390|gb|EGH89446.1| ribonuclease PH [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 240

 Score =  246 bits (628), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 167/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L+ ++      +    LK  +AA+S GM  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALADALKVIKK-RGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  +   AML LA+  + +L +LQ+  +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQRAALAD 240


>gi|152984751|ref|YP_001351426.1| ribonuclease PH [Pseudomonas aeruginosa PA7]
 gi|166228301|sp|A6VEE1|RNPH_PSEA7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|150959909|gb|ABR81934.1| ribonuclease PH [Pseudomonas aeruginosa PA7]
          Length = 239

 Score =  246 bits (627), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 125/238 (52%), Positives = 163/238 (68%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T + E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R +REA  G+QGGR+ EIQR+IGR+LR+ +DLS LG   + IDCDVIQA
Sbjct: 63  EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++           LK  VAA+S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGATVALIDALAVLK--KRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  + D N VMTDSG  +EVQG+AE A F      AML LA+  + +L +LQ+  ++
Sbjct: 181 DSAAETDLNVVMTDSGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALA 238


>gi|77461768|ref|YP_351275.1| ribonuclease PH [Pseudomonas fluorescens Pf0-1]
 gi|123602792|sp|Q3K4M0|RNPH_PSEPF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|77385771|gb|ABA77284.1| ribonuclease PH [Pseudomonas fluorescens Pf0-1]
          Length = 240

 Score =  246 bits (627), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDLTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L+ ++      +    LK  + A+S GM  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALVDALKVIKK-RGGLKGGDPLKQMIGAVSVGMYQGEPVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  +   AML LAK  + ++ +LQK  +++
Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPEELNAMLELAKKGMNEIFELQKAALAD 240


>gi|307294011|ref|ZP_07573855.1| ribonuclease PH [Sphingobium chlorophenolicum L-1]
 gi|306880162|gb|EFN11379.1| ribonuclease PH [Sphingobium chlorophenolicum L-1]
          Length = 238

 Score =  246 bits (627), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 118/211 (55%), Positives = 154/211 (72%), Gaps = 2/211 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +QMREI++    + +AEGSCL+ FGDT +L TA++EEKVP ++R    GW+T
Sbjct: 1   MRPSGRAPDQMREITMEPGFTIHAEGSCLISFGDTRVLCTASIEEKVPPFLRGKGSGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVDL  LG RQI++DCDVIQ
Sbjct: 61  AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDLEKLGERQIVVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+G+WVAL   +  +   S   +   +++  VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAISGSWVALRIAVDKLL-ASGALKEDPIVQ-KVAAISCGIYKGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
           EDS  + DAN ++T  G   EVQ +AE AT+
Sbjct: 179 EDSNAEADANLILTGDGKFAEVQATAEGATY 209


>gi|308047849|ref|YP_003911415.1| ribonuclease PH [Ferrimonas balearica DSM 9799]
 gi|307630039|gb|ADN74341.1| ribonuclease PH [Ferrimonas balearica DSM 9799]
          Length = 238

 Score =  246 bits (627), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 125/240 (52%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  +Q+R +S+TR  + +AEGS LV FG+T ++ TA++EE VP ++R    GWIT
Sbjct: 1   MRSNGRAADQVRPVSITRNFTAHAEGSVLVAFGNTKVICTASVEESVPRFLRGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+Q GR+ EIQR+IGR+LR+ VDL ALG   I IDCDVIQ
Sbjct: 61  AEYGMLPRATHSRNDREAARGKQSGRTMEIQRLIGRSLRAAVDLEALGEVTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D + H++      ++S  LK  +AAIS G++  + + DLDY 
Sbjct: 121 ADGGTRTAAITGACVALMDAIDHLK-AKGVLKVSP-LKQQIAAISVGVVGEHAVCDLDYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS+ + D N VM + G I+EVQG+AE   F+ +    M+ LAK  I  LI  QK   +N
Sbjct: 179 EDSSAETDMNVVMAEDGRIIEVQGTAEGEPFTYEQMLEMMALAKTGIEQLIAAQKAAYNN 238


>gi|30065081|ref|NP_839252.1| ribonuclease PH [Shigella flexneri 2a str. 2457T]
 gi|56480393|ref|NP_709422.2| ribonuclease PH [Shigella flexneri 2a str. 301]
 gi|110807680|ref|YP_691200.1| ribonuclease PH [Shigella flexneri 5 str. 8401]
 gi|157163124|ref|YP_001460442.1| ribonuclease PH [Escherichia coli HS]
 gi|170018127|ref|YP_001723081.1| ribonuclease PH [Escherichia coli ATCC 8739]
 gi|194435850|ref|ZP_03067953.1| ribonuclease PH [Escherichia coli 101-1]
 gi|253771516|ref|YP_003034347.1| ribonuclease PH [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254163571|ref|YP_003046679.1| ribonuclease PH [Escherichia coli B str. REL606]
 gi|260857962|ref|YP_003231853.1| ribonuclease PH [Escherichia coli O26:H11 str. 11368]
 gi|260870373|ref|YP_003236775.1| ribonuclease PH [Escherichia coli O111:H- str. 11128]
 gi|297518127|ref|ZP_06936513.1| ribonuclease PH [Escherichia coli OP50]
 gi|300907685|ref|ZP_07125313.1| ribonuclease PH [Escherichia coli MS 84-1]
 gi|300923429|ref|ZP_07139469.1| ribonuclease PH [Escherichia coli MS 182-1]
 gi|300927927|ref|ZP_07143486.1| ribonuclease PH [Escherichia coli MS 187-1]
 gi|301303877|ref|ZP_07209996.1| ribonuclease PH [Escherichia coli MS 124-1]
 gi|301325325|ref|ZP_07218832.1| ribonuclease PH [Escherichia coli MS 78-1]
 gi|312972072|ref|ZP_07786246.1| ribonuclease PH [Escherichia coli 1827-70]
 gi|61216048|sp|Q83PN2|RNPH_SHIFL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123047760|sp|Q0SYH0|RNPH_SHIF8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166991084|sp|A8A6A5|RNPH_ECOHS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043762|sp|B1IYV7|RNPH_ECOLC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|30043342|gb|AAP19063.1| RNase PH [Shigella flexneri 2a str. 2457T]
 gi|56383944|gb|AAN45129.2| RNase PH [Shigella flexneri 2a str. 301]
 gi|110617228|gb|ABF05895.1| RNase PH [Shigella flexneri 5 str. 8401]
 gi|157068804|gb|ABV08059.1| ribonuclease PH [Escherichia coli HS]
 gi|169753055|gb|ACA75754.1| ribonuclease PH [Escherichia coli ATCC 8739]
 gi|194425393|gb|EDX41377.1| ribonuclease PH [Escherichia coli 101-1]
 gi|253322560|gb|ACT27162.1| ribonuclease PH [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975472|gb|ACT41143.1| ribonuclease PH [Escherichia coli B str. REL606]
 gi|253979628|gb|ACT45298.1| ribonuclease PH [Escherichia coli BL21(DE3)]
 gi|257756611|dbj|BAI28113.1| ribonuclease PH [Escherichia coli O26:H11 str. 11368]
 gi|257766729|dbj|BAI38224.1| ribonuclease PH [Escherichia coli O111:H- str. 11128]
 gi|281603006|gb|ADA75990.1| Ribonuclease PH [Shigella flexneri 2002017]
 gi|300400621|gb|EFJ84159.1| ribonuclease PH [Escherichia coli MS 84-1]
 gi|300420256|gb|EFK03567.1| ribonuclease PH [Escherichia coli MS 182-1]
 gi|300464019|gb|EFK27512.1| ribonuclease PH [Escherichia coli MS 187-1]
 gi|300840840|gb|EFK68600.1| ribonuclease PH [Escherichia coli MS 124-1]
 gi|300847852|gb|EFK75612.1| ribonuclease PH [Escherichia coli MS 78-1]
 gi|309704045|emb|CBJ03391.1| ribonuclease PH [Escherichia coli ETEC H10407]
 gi|310334449|gb|EFQ00654.1| ribonuclease PH [Escherichia coli 1827-70]
 gi|313647483|gb|EFS11933.1| ribonuclease PH [Shigella flexneri 2a str. 2457T]
 gi|313848787|emb|CAQ33969.2| rph [Escherichia coli BL21(DE3)]
 gi|315254030|gb|EFU33998.1| ribonuclease PH [Escherichia coli MS 85-1]
 gi|320201331|gb|EFW75912.1| Ribonuclease PH [Escherichia coli EC4100B]
 gi|323155294|gb|EFZ41477.1| ribonuclease PH [Escherichia coli EPECa14]
 gi|323173236|gb|EFZ58865.1| ribonuclease PH [Escherichia coli LT-68]
 gi|323179387|gb|EFZ64954.1| ribonuclease PH [Escherichia coli 1180]
 gi|323944096|gb|EGB40176.1| ribonuclease PH [Escherichia coli H120]
 gi|323959891|gb|EGB55539.1| ribonuclease PH [Escherichia coli H489]
 gi|323971285|gb|EGB66530.1| ribonuclease PH [Escherichia coli TA007]
 gi|332750601|gb|EGJ81009.1| ribonuclease PH [Shigella flexneri 4343-70]
 gi|332751354|gb|EGJ81757.1| ribonuclease PH [Shigella flexneri 2747-71]
 gi|332764155|gb|EGJ94392.1| ribonuclease PH [Shigella flexneri 2930-71]
 gi|332996132|gb|EGK15759.1| ribonuclease PH [Shigella flexneri VA-6]
 gi|332997420|gb|EGK17036.1| ribonuclease PH [Shigella flexneri K-218]
 gi|332997778|gb|EGK17389.1| ribonuclease PH [Shigella flexneri K-272]
 gi|333012908|gb|EGK32285.1| ribonuclease PH [Shigella flexneri K-304]
 gi|333013313|gb|EGK32685.1| ribonuclease PH [Shigella flexneri K-227]
          Length = 238

 Score =  246 bits (627), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 127/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D LQ +    N    +  +KG VAA+S G++ G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALQKL--VENGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238


>gi|152998356|ref|YP_001343191.1| ribonuclease PH [Marinomonas sp. MWYL1]
 gi|189043766|sp|A6W3H7|RNPH_MARMS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|150839280|gb|ABR73256.1| ribonuclease PH [Marinomonas sp. MWYL1]
          Length = 239

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 118/235 (50%), Positives = 163/235 (69%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +Q+R + +TR  +K+AEGS L++ GDT ++ TAT+   VP +++    GWIT
Sbjct: 1   MRPSGREADQLRPLKITRNFTKHAEGSVLIECGDTKVICTATVVSGVPRFLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+IGR+LR+ VDL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMDREAARGKQGGRTVEIQRLIGRSLRAAVDLKKLGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +VAL D ++ +    NK      +   +AAIS G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGGFVALADAMRVL--VENKKVKENPIVSQIAAISVGVYKGVPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  + D N +M D G  +E+QG+AE   FS +H   ML +A+  IA++++ Q+
Sbjct: 179 EDSNAETDMNVIMNDKGGFIEIQGTAEGEAFSDEHMMGMLAVARKGIAEIMEAQR 233


>gi|237797786|ref|ZP_04586247.1| ribonuclease PH [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020636|gb|EGI00693.1| ribonuclease PH [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 240

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L+ ++      +    LK  +AA+S GM  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALADALKVIKK-RGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT  G  +E+QG+AE A F  +   AML LAK  + +L +LQ+  +++
Sbjct: 182 DSAAETDLNVVMTSEGGFIEIQGTAEGAPFQPEELNAMLALAKKGMNELFELQRAALAD 240


>gi|71553993|gb|AAZ33204.1| ribonuclease PH [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 294

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 167/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 57  RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 116

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 117 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 176

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L+ ++      +    LK  +AA+S GM  G P++DLDY E
Sbjct: 177 DGGTRTASITGAMVALADALKVIKK-RGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYPE 235

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  +   AML LA+  + +L +LQ+  +++
Sbjct: 236 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQRAALAD 294


>gi|294142837|ref|YP_003558815.1| ribonuclease PH [Shewanella violacea DSS12]
 gi|293329306|dbj|BAJ04037.1| ribonuclease PH [Shewanella violacea DSS12]
          Length = 237

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 164/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q R +++TR+ + +AEGS LV+FG+T +L TA+ EE VP +++    GW+T
Sbjct: 1   MRPSDRTPAQSRPVTITRQFTAHAEGSVLVEFGETKVLCTASFEEGVPRFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGR+LR+ VD+ ALG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTHTRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D L            +  LK  +AA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G ++E+QG+AE   FS +   +ML LAK  I +++ +QK  ++
Sbjct: 179 EDSAAETDMNVVMTETGKMIEIQGTAEGEPFSHEELLSMLELAKHGIREIVDVQKAALN 237


>gi|192362066|ref|YP_001980727.1| ribonuclease PH [Cellvibrio japonicus Ueda107]
 gi|226736897|sp|B3PGE8|RNPH_CELJU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|190688231|gb|ACE85909.1| ribonuclease PH [Cellvibrio japonicus Ueda107]
          Length = 239

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 120/226 (53%), Positives = 160/226 (70%), Gaps = 2/226 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR    +R I +TRR +K+AEGS L++FGDT ++ TA++   VP ++R    GW+TA
Sbjct: 3   RPSGRNPQALRPIRITRRYTKHAEGSVLIEFGDTKVICTASVVAGVPSFLRGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R+ REA  G+Q GR+ EIQR+IGR+LR+ +DL+ALG   I +DCDVIQA
Sbjct: 63  EYGMLPRSTGTRMDREAARGKQQGRTVEIQRLIGRSLRAAIDLNALGENTIHLDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGAWVAL D +  ++  +      + LK  +A++S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGAWVALADAVAWLK--AEGRVTDEPLKRAIASVSVGIYQGVPVLDLDYPE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
           DS  D D N VM D G I+E+QG+AE   F++  F AML+LAK  I
Sbjct: 181 DSAADTDMNVVMGDDGGIIEIQGTAEAEPFTEAEFAAMLSLAKQGI 226


>gi|127514416|ref|YP_001095613.1| ribonuclease PH [Shewanella loihica PV-4]
 gi|166228318|sp|A3QIQ6|RNPH_SHELP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|126639711|gb|ABO25354.1| RNAse PH [Shewanella loihica PV-4]
          Length = 237

 Score =  245 bits (626), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q R +++TR+ + +AEGS L++FG+T +L TA+  E VP +++    GW+T
Sbjct: 1   MRPSDRTPAQSRPVTITRQFTAHAEGSVLIEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+Q GR+QEIQR+IGRALR+ VD+ ALG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRAAVDMKALGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D L            +  LK  +AA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGLIKTNPLKFLIAAVSVGIYKGEPICDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G I+E+QG+AE   FS +   ++L+LAK  I +++ +QK  +S
Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLSLLDLAKHGIREIVDVQKAALS 237


>gi|197123834|ref|YP_002135785.1| ribonuclease PH [Anaeromyxobacter sp. K]
 gi|220918599|ref|YP_002493903.1| ribonuclease PH [Anaeromyxobacter dehalogenans 2CP-1]
 gi|226736882|sp|B4UBI2|RNPH_ANASK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808575|sp|B8J5H5|RNPH_ANAD2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|196173683|gb|ACG74656.1| ribonuclease PH [Anaeromyxobacter sp. K]
 gi|219956453|gb|ACL66837.1| ribonuclease PH [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 239

 Score =  245 bits (626), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 129/236 (54%), Positives = 168/236 (71%), Gaps = 4/236 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR E  +R I L  RVSK+AEGSCLV+FGDTH+L TA+++EKVP  +  T  GW+T
Sbjct: 1   MRKNGRGELDLRPILLEPRVSKHAEGSCLVRFGDTHVLCTASVDEKVPPHVYGTGAGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R++REA  G+Q GR+ EIQR++GRALR+ VDL A+G R + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHERMQREAARGKQTGRTLEIQRLVGRALRAAVDLRAIGPRTVTLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTAAITGA+VAL   +Q +     + QL+Q  +K  VAA+S G++ G   +DLDY
Sbjct: 121 ADGGTRTAAITGAYVAL---VQAVRGIQKRRQLAQDPVKRSVAAVSVGIVAGQVHLDLDY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            EDST +VD N V T  G +VEVQG+AE   F +     ML+ A   ++ L +LQ+
Sbjct: 178 DEDSTAEVDMNVVATGDGALVEVQGTAEGKPFPRAELDRMLDAALAGLSRLKELQE 233


>gi|56550910|ref|YP_161749.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ZM4]
 gi|260753398|ref|YP_003226291.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|61215796|sp|Q5NRL6|RNPH_ZYMMO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|56542484|gb|AAV88638.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ZM4]
 gi|258552761|gb|ACV75707.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 237

 Score =  245 bits (626), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 164/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R +S+    +++AEGSCL+ FGDT +L TA+LEE++P W+R    GW+T
Sbjct: 1   MRPSGRTPDQLRSLSIETGFTRHAEGSCLISFGDTRVLVTASLEERLPSWLRGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+Q GR+QEIQR+IGR+LR+ +DL  LG RQI IDCDV+Q
Sbjct: 61  AEYGMLPRSTHSRTNREAARGKQSGRTQEIQRLIGRSLRAGIDLKKLGERQITIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+G WVAL   +  +   S +     ++   VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASISGGWVALRLAVNKLL-ASGQLTEDPIIS-QVAAVSCGISQGVPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST + DANFVM     ++EVQ SAE A + ++    +L LA+     +   QK  ++
Sbjct: 179 EDSTAEADANFVMMGDSRLIEVQASAEGAPYDEEGLLRLLRLARMGCQQIFAEQKKAVA 237


>gi|218556206|ref|YP_002389119.1| ribonuclease PH [Escherichia coli IAI1]
 gi|218697364|ref|YP_002405031.1| ribonuclease PH [Escherichia coli 55989]
 gi|254038843|ref|ZP_04872895.1| ribonuclease PH [Escherichia sp. 1_1_43]
 gi|218354096|emb|CAV00651.1| ribonuclease PH [Escherichia coli 55989]
 gi|218362974|emb|CAR00611.1| ribonuclease PH [Escherichia coli IAI1]
 gi|226838808|gb|EEH70835.1| ribonuclease PH [Escherichia sp. 1_1_43]
          Length = 246

 Score =  245 bits (626), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 127/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 9   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 69  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D LQ +    N    +  +KG VAA+S G++ G  I DL+Y 
Sbjct: 129 ADGGTRTASITGACVALADALQKL--VENGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 186

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 187 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 246


>gi|254439955|ref|ZP_05053449.1| ribonuclease PH [Octadecabacter antarcticus 307]
 gi|198255401|gb|EDY79715.1| ribonuclease PH [Octadecabacter antarcticus 307]
          Length = 235

 Score =  245 bits (626), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 125/234 (53%), Positives = 172/234 (73%), Gaps = 4/234 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  + MR IS+   V+++AEGSCL+K GDT +L TA+++E+VP +++N+  GW+T
Sbjct: 1   MRPSGRTIDGMRPISIEIDVTRHAEGSCLIKCGDTQVLCTASIDERVPSFLKNSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA +G Q GR+QEIQR+IGR+LR+ +D  ALG RQI+IDCDVIQ
Sbjct: 61  AEYGMLPRATNTRMRREAKNG-QSGRTQEIQRLIGRSLRAGIDRVALGERQIVIDCDVIQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +Q + +  +   +S  L   VAA+SCG+  G  ++DLDY 
Sbjct: 120 ADGGTRCASITGGWVALKLAVQKLMNAGDV--ISDPLLIPVAAVSCGIYAGQSVLDLDYP 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           EDS   VD NFVMT +  ++E+Q SAE +TF++D   AM++LA   IA+L  +Q
Sbjct: 178 EDSEAGVDGNFVMT-ADKLIEIQMSAEGSTFTRDQMNAMMDLAHKGIAELTAVQ 230


>gi|28867317|ref|NP_789936.1| ribonuclease PH [Pseudomonas syringae pv. tomato str. DC3000]
 gi|61216049|sp|Q88BE0|RNPH_PSESM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|28850551|gb|AAO53631.1| ribonuclease PH [Pseudomonas syringae pv. tomato str. DC3000]
 gi|331018562|gb|EGH98618.1| ribonuclease PH [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 240

 Score =  245 bits (626), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 167/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L+ ++      +    LK  +AA+S GM  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALADALKVIKK-RGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  +   AML LA+  + +L ++Q+  +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEMQRAALAD 240


>gi|312795401|ref|YP_004028323.1| ribonuclease PH [Burkholderia rhizoxinica HKI 454]
 gi|312167176|emb|CBW74179.1| Ribonuclease PH (EC 2.7.7.56) [Burkholderia rhizoxinica HKI 454]
          Length = 243

 Score =  245 bits (626), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 124/237 (52%), Positives = 165/237 (69%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  + +R++ +TR  +K+AEGS L++ GDT ++ TA++ EKVP ++R+   GW+TA
Sbjct: 7   RPSGRAADALRDVCITRHYTKHAEGSVLIECGDTKVICTASVLEKVPEFLRDRGRGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL  LG R + IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRALRAVFDLEKLGPRTLHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+ITGA++A HD +  +     K   + +L  HVAA+S G+    P++DLDY E
Sbjct: 127 DGGTRCASITGAFIAAHDAVDTLL-AHGKLTATPILD-HVAAVSVGIHGATPVLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VMT +G  VEVQG+AE   FS+D   A+L LA+  I  LI+LQK  +
Sbjct: 185 DSHCDTDMNVVMTGAGRFVEVQGTAEGEPFSRDELNALLGLAESGITRLIELQKKAL 241


>gi|83595868|gb|ABC25230.1| ribonuclease PH [uncultured marine bacterium Ant4D3]
          Length = 256

 Score =  245 bits (626), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 117/239 (48%), Positives = 166/239 (69%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R+I +TR  +K+AEGS L++FGDT +L TAT+E  VP ++R +  GW+TA
Sbjct: 18  RPSGRATDQLRDIKITRGFTKHAEGSVLIEFGDTRVLCTATVERGVPRFLRGSGSGWVTA 77

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T +R  REA  G+QGGR+ EIQR+IGR+LR+ ++L  LG   I +DCDV+QA
Sbjct: 78  EYGMLPRATHSRNGREAARGKQGGRTLEIQRLIGRSLRASLNLEKLGENTITLDCDVLQA 137

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA++A+ D +  ++   N       L+  +AAIS G+    P++DLDY E
Sbjct: 138 DGGTRTASITGAYIAMVDAINVLKKDKNGAMRGDPLRRQIAAISVGIYKDEPVLDLDYDE 197

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT  G  +EVQG+AE + ++QD   AML LA+  I ++  LQ   +++
Sbjct: 198 DSKAETDMNVVMTADGGFIEVQGTAEGSPYTQDQMMAMLALARKGITEIAALQTAALAD 256


>gi|15804184|ref|NP_290223.1| ribonuclease PH [Escherichia coli O157:H7 EDL933]
 gi|15833772|ref|NP_312545.1| ribonuclease PH [Escherichia coli O157:H7 str. Sakai]
 gi|74314123|ref|YP_312542.1| ribonuclease PH [Shigella sonnei Ss046]
 gi|82546006|ref|YP_409953.1| ribonuclease PH [Shigella boydii Sb227]
 gi|117625915|ref|YP_859238.1| ribonuclease PH [Escherichia coli APEC O1]
 gi|157158506|ref|YP_001465123.1| ribonuclease PH [Escherichia coli E24377A]
 gi|161486067|ref|NP_756329.2| ribonuclease PH [Escherichia coli CFT073]
 gi|162138338|ref|YP_543146.2| ribonuclease PH [Escherichia coli UTI89]
 gi|168748709|ref|ZP_02773731.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4113]
 gi|168753467|ref|ZP_02778474.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4401]
 gi|168759740|ref|ZP_02784747.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4501]
 gi|168766063|ref|ZP_02791070.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4486]
 gi|168772391|ref|ZP_02797398.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4196]
 gi|168779798|ref|ZP_02804805.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4076]
 gi|168785519|ref|ZP_02810526.1| ribonuclease PH [Escherichia coli O157:H7 str. EC869]
 gi|168798588|ref|ZP_02823595.1| ribonuclease PH [Escherichia coli O157:H7 str. EC508]
 gi|170680501|ref|YP_001745943.1| ribonuclease PH [Escherichia coli SMS-3-5]
 gi|187733771|ref|YP_001882340.1| ribonuclease PH [Shigella boydii CDC 3083-94]
 gi|191167816|ref|ZP_03029622.1| ribonuclease PH [Escherichia coli B7A]
 gi|193063848|ref|ZP_03044935.1| ribonuclease PH [Escherichia coli E22]
 gi|193070385|ref|ZP_03051327.1| ribonuclease PH [Escherichia coli E110019]
 gi|194430060|ref|ZP_03062565.1| ribonuclease PH [Escherichia coli B171]
 gi|194431006|ref|ZP_03063299.1| ribonuclease PH [Shigella dysenteriae 1012]
 gi|195936204|ref|ZP_03081586.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4024]
 gi|208807479|ref|ZP_03249816.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4206]
 gi|208812475|ref|ZP_03253804.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4045]
 gi|208819811|ref|ZP_03260131.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4042]
 gi|209399306|ref|YP_002273121.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4115]
 gi|209921114|ref|YP_002295198.1| ribonuclease PH [Escherichia coli SE11]
 gi|217324320|ref|ZP_03440404.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14588]
 gi|227883811|ref|ZP_04001616.1| ribonuclease PH [Escherichia coli 83972]
 gi|237703414|ref|ZP_04533895.1| ribonuclease PH [Escherichia sp. 3_2_53FAA]
 gi|254795598|ref|YP_003080435.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14359]
 gi|256021353|ref|ZP_05435218.1| ribonuclease PH [Shigella sp. D9]
 gi|256025627|ref|ZP_05439492.1| ribonuclease PH [Escherichia sp. 4_1_40B]
 gi|260846592|ref|YP_003224370.1| ribonuclease PH [Escherichia coli O103:H2 str. 12009]
 gi|261224174|ref|ZP_05938455.1| ribonuclease PH [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254784|ref|ZP_05947317.1| ribonuclease PH [Escherichia coli O157:H7 str. FRIK966]
 gi|291285014|ref|YP_003501832.1| Ribonuclease PH [Escherichia coli O55:H7 str. CB9615]
 gi|293407266|ref|ZP_06651190.1| rph [Escherichia coli FVEC1412]
 gi|293413077|ref|ZP_06655745.1| ribonuclease PH [Escherichia coli B354]
 gi|293417104|ref|ZP_06659731.1| ribonuclease PH [Escherichia coli B185]
 gi|293463967|ref|ZP_06664381.1| ribonuclease PH [Escherichia coli B088]
 gi|298383012|ref|ZP_06992607.1| ribonuclease PH [Escherichia coli FVEC1302]
 gi|300815118|ref|ZP_07095343.1| ribonuclease PH [Escherichia coli MS 107-1]
 gi|300822413|ref|ZP_07102553.1| ribonuclease PH [Escherichia coli MS 119-7]
 gi|300898578|ref|ZP_07116908.1| ribonuclease PH [Escherichia coli MS 198-1]
 gi|300919790|ref|ZP_07136265.1| ribonuclease PH [Escherichia coli MS 115-1]
 gi|300939243|ref|ZP_07153922.1| ribonuclease PH [Escherichia coli MS 21-1]
 gi|300948023|ref|ZP_07162164.1| ribonuclease PH [Escherichia coli MS 116-1]
 gi|300954463|ref|ZP_07166913.1| ribonuclease PH [Escherichia coli MS 175-1]
 gi|300984904|ref|ZP_07177192.1| ribonuclease PH [Escherichia coli MS 45-1]
 gi|301018972|ref|ZP_07183195.1| ribonuclease PH [Escherichia coli MS 69-1]
 gi|301028402|ref|ZP_07191648.1| ribonuclease PH [Escherichia coli MS 196-1]
 gi|301047433|ref|ZP_07194512.1| ribonuclease PH [Escherichia coli MS 185-1]
 gi|301644309|ref|ZP_07244311.1| ribonuclease PH [Escherichia coli MS 146-1]
 gi|307140341|ref|ZP_07499697.1| ribonuclease PH [Escherichia coli H736]
 gi|307314272|ref|ZP_07593880.1| ribonuclease PH [Escherichia coli W]
 gi|309797616|ref|ZP_07692004.1| ribonuclease PH [Escherichia coli MS 145-7]
 gi|331644361|ref|ZP_08345490.1| tRNA nucleotidyltransferase [Escherichia coli H736]
 gi|331649458|ref|ZP_08350544.1| tRNA nucleotidyltransferase [Escherichia coli M605]
 gi|331655275|ref|ZP_08356274.1| tRNA nucleotidyltransferase [Escherichia coli M718]
 gi|331659963|ref|ZP_08360901.1| tRNA nucleotidyltransferase [Escherichia coli TA206]
 gi|331665268|ref|ZP_08366169.1| tRNA nucleotidyltransferase [Escherichia coli TA143]
 gi|331670483|ref|ZP_08371322.1| tRNA nucleotidyltransferase [Escherichia coli TA271]
 gi|331675122|ref|ZP_08375879.1| tRNA nucleotidyltransferase [Escherichia coli TA280]
 gi|331679734|ref|ZP_08380404.1| tRNA nucleotidyltransferase [Escherichia coli H591]
 gi|331685306|ref|ZP_08385892.1| tRNA nucleotidyltransferase [Escherichia coli H299]
 gi|332282587|ref|ZP_08395000.1| ribonuclease PH [Shigella sp. D9]
 gi|54039263|sp|P66680|RNPH_ECO57 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|54042177|sp|P66679|RNPH_ECOL6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123558299|sp|Q31UY3|RNPH_SHIBS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123615832|sp|Q3YW05|RNPH_SHISS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228279|sp|A1AHH4|RNPH_ECOK1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166991083|sp|A7ZTJ4|RNPH_ECO24 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736905|sp|B5YWE1|RNPH_ECO5E RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736906|sp|B6I3M0|RNPH_ECOSE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736907|sp|B1LK80|RNPH_ECOSM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736941|sp|B2TTV7|RNPH_SHIB3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|12518399|gb|AAG58787.1|AE005591_11 RNase PH [Escherichia coli O157:H7 str. EDL933]
 gi|13363993|dbj|BAB37941.1| RNase PH [Escherichia coli O157:H7 str. Sakai]
 gi|73857600|gb|AAZ90307.1| RNase PH [Shigella sonnei Ss046]
 gi|81247417|gb|ABB68125.1| RNase PH [Shigella boydii Sb227]
 gi|115515039|gb|ABJ03114.1| ribonuclease PH [Escherichia coli APEC O1]
 gi|157080536|gb|ABV20244.1| ribonuclease PH [Escherichia coli E24377A]
 gi|170518219|gb|ACB16397.1| ribonuclease PH [Escherichia coli SMS-3-5]
 gi|187430763|gb|ACD10037.1| ribonuclease PH [Shigella boydii CDC 3083-94]
 gi|187771578|gb|EDU35422.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4196]
 gi|188016889|gb|EDU55011.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4113]
 gi|189002636|gb|EDU71622.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4076]
 gi|189359228|gb|EDU77647.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4401]
 gi|189364689|gb|EDU83108.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4486]
 gi|189369513|gb|EDU87929.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4501]
 gi|189374286|gb|EDU92702.1| ribonuclease PH [Escherichia coli O157:H7 str. EC869]
 gi|189378769|gb|EDU97185.1| ribonuclease PH [Escherichia coli O157:H7 str. EC508]
 gi|190902159|gb|EDV61902.1| ribonuclease PH [Escherichia coli B7A]
 gi|192930563|gb|EDV83170.1| ribonuclease PH [Escherichia coli E22]
 gi|192956324|gb|EDV86785.1| ribonuclease PH [Escherichia coli E110019]
 gi|194411887|gb|EDX28204.1| ribonuclease PH [Escherichia coli B171]
 gi|194420461|gb|EDX36537.1| ribonuclease PH [Shigella dysenteriae 1012]
 gi|208727280|gb|EDZ76881.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4206]
 gi|208733752|gb|EDZ82439.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4045]
 gi|208739934|gb|EDZ87616.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4042]
 gi|209160706|gb|ACI38139.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4115]
 gi|209754598|gb|ACI75606.1| RNase PH [Escherichia coli]
 gi|209754600|gb|ACI75607.1| RNase PH [Escherichia coli]
 gi|209754602|gb|ACI75608.1| RNase PH [Escherichia coli]
 gi|209754604|gb|ACI75609.1| RNase PH [Escherichia coli]
 gi|209754606|gb|ACI75610.1| RNase PH [Escherichia coli]
 gi|209914373|dbj|BAG79447.1| ribonuclease PH [Escherichia coli SE11]
 gi|217320541|gb|EEC28965.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14588]
 gi|222035351|emb|CAP78096.1| ribonuclease PH [Escherichia coli LF82]
 gi|226902678|gb|EEH88937.1| ribonuclease PH [Escherichia sp. 3_2_53FAA]
 gi|227839089|gb|EEJ49555.1| ribonuclease PH [Escherichia coli 83972]
 gi|254594998|gb|ACT74359.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14359]
 gi|257761739|dbj|BAI33236.1| ribonuclease PH [Escherichia coli O103:H2 str. 12009]
 gi|281180689|dbj|BAI57019.1| ribonuclease PH [Escherichia coli SE15]
 gi|284923676|emb|CBG36773.1| ribonuclease PH [Escherichia coli 042]
 gi|290764887|gb|ADD58848.1| Ribonuclease PH [Escherichia coli O55:H7 str. CB9615]
 gi|291321599|gb|EFE61035.1| ribonuclease PH [Escherichia coli B088]
 gi|291426077|gb|EFE99111.1| rph [Escherichia coli FVEC1412]
 gi|291431135|gb|EFF04128.1| ribonuclease PH [Escherichia coli B185]
 gi|291468724|gb|EFF11217.1| ribonuclease PH [Escherichia coli B354]
 gi|294492761|gb|ADE91517.1| ribonuclease PH [Escherichia coli IHE3034]
 gi|298276848|gb|EFI18366.1| ribonuclease PH [Escherichia coli FVEC1302]
 gi|299878513|gb|EFI86724.1| ribonuclease PH [Escherichia coli MS 196-1]
 gi|300300641|gb|EFJ57026.1| ribonuclease PH [Escherichia coli MS 185-1]
 gi|300318542|gb|EFJ68326.1| ribonuclease PH [Escherichia coli MS 175-1]
 gi|300357741|gb|EFJ73611.1| ribonuclease PH [Escherichia coli MS 198-1]
 gi|300399466|gb|EFJ83004.1| ribonuclease PH [Escherichia coli MS 69-1]
 gi|300408333|gb|EFJ91871.1| ribonuclease PH [Escherichia coli MS 45-1]
 gi|300413143|gb|EFJ96453.1| ribonuclease PH [Escherichia coli MS 115-1]
 gi|300452418|gb|EFK16038.1| ribonuclease PH [Escherichia coli MS 116-1]
 gi|300455842|gb|EFK19335.1| ribonuclease PH [Escherichia coli MS 21-1]
 gi|300525060|gb|EFK46129.1| ribonuclease PH [Escherichia coli MS 119-7]
 gi|300532010|gb|EFK53072.1| ribonuclease PH [Escherichia coli MS 107-1]
 gi|301077347|gb|EFK92153.1| ribonuclease PH [Escherichia coli MS 146-1]
 gi|306906095|gb|EFN36614.1| ribonuclease PH [Escherichia coli W]
 gi|307555742|gb|ADN48517.1| ribonuclease PH [Escherichia coli ABU 83972]
 gi|307628716|gb|ADN73020.1| ribonuclease PH [Escherichia coli UM146]
 gi|308118803|gb|EFO56065.1| ribonuclease PH [Escherichia coli MS 145-7]
 gi|312948204|gb|ADR29031.1| ribonuclease PH [Escherichia coli O83:H1 str. NRG 857C]
 gi|315062931|gb|ADT77258.1| ribonuclease PH [Escherichia coli W]
 gi|315285457|gb|EFU44902.1| ribonuclease PH [Escherichia coli MS 110-3]
 gi|315296969|gb|EFU56249.1| ribonuclease PH [Escherichia coli MS 16-3]
 gi|315618654|gb|EFU99240.1| ribonuclease PH [Escherichia coli 3431]
 gi|320176298|gb|EFW51358.1| Ribonuclease PH [Shigella dysenteriae CDC 74-1112]
 gi|320179979|gb|EFW54921.1| Ribonuclease PH [Shigella boydii ATCC 9905]
 gi|320186817|gb|EFW61537.1| Ribonuclease PH [Shigella flexneri CDC 796-83]
 gi|320191306|gb|EFW65956.1| Ribonuclease PH [Escherichia coli O157:H7 str. EC1212]
 gi|320193850|gb|EFW68483.1| Ribonuclease PH [Escherichia coli WV_060327]
 gi|320639550|gb|EFX09158.1| ribonuclease PH [Escherichia coli O157:H7 str. G5101]
 gi|320644989|gb|EFX14019.1| ribonuclease PH [Escherichia coli O157:H- str. 493-89]
 gi|320650256|gb|EFX18745.1| ribonuclease PH [Escherichia coli O157:H- str. H 2687]
 gi|320661342|gb|EFX28766.1| ribonuclease PH [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666356|gb|EFX33355.1| ribonuclease PH [Escherichia coli O157:H7 str. LSU-61]
 gi|323160749|gb|EFZ46685.1| ribonuclease PH [Escherichia coli E128010]
 gi|323166871|gb|EFZ52610.1| ribonuclease PH [Shigella sonnei 53G]
 gi|323182671|gb|EFZ68074.1| ribonuclease PH [Escherichia coli 1357]
 gi|323189449|gb|EFZ74730.1| ribonuclease PH [Escherichia coli RN587/1]
 gi|323376476|gb|ADX48744.1| ribonuclease PH [Escherichia coli KO11]
 gi|323934812|gb|EGB31194.1| ribonuclease PH [Escherichia coli E1520]
 gi|323939598|gb|EGB35804.1| ribonuclease PH [Escherichia coli E482]
 gi|323949882|gb|EGB45766.1| ribonuclease PH [Escherichia coli H252]
 gi|323954817|gb|EGB50597.1| ribonuclease PH [Escherichia coli H263]
 gi|324008099|gb|EGB77318.1| ribonuclease PH [Escherichia coli MS 57-2]
 gi|324019680|gb|EGB88899.1| ribonuclease PH [Escherichia coli MS 117-3]
 gi|324111538|gb|EGC05519.1| ribonuclease PH [Escherichia fergusonii B253]
 gi|324116018|gb|EGC09944.1| ribonuclease PH [Escherichia coli E1167]
 gi|326337358|gb|EGD61193.1| Ribonuclease PH [Escherichia coli O157:H7 str. 1044]
 gi|326339883|gb|EGD63690.1| Ribonuclease PH [Escherichia coli O157:H7 str. 1125]
 gi|330909705|gb|EGH38219.1| ribonuclease PH [Escherichia coli AA86]
 gi|331036655|gb|EGI08881.1| tRNA nucleotidyltransferase [Escherichia coli H736]
 gi|331041956|gb|EGI14100.1| tRNA nucleotidyltransferase [Escherichia coli M605]
 gi|331047290|gb|EGI19368.1| tRNA nucleotidyltransferase [Escherichia coli M718]
 gi|331053178|gb|EGI25211.1| tRNA nucleotidyltransferase [Escherichia coli TA206]
 gi|331057778|gb|EGI29764.1| tRNA nucleotidyltransferase [Escherichia coli TA143]
 gi|331062545|gb|EGI34465.1| tRNA nucleotidyltransferase [Escherichia coli TA271]
 gi|331068031|gb|EGI39429.1| tRNA nucleotidyltransferase [Escherichia coli TA280]
 gi|331072906|gb|EGI44231.1| tRNA nucleotidyltransferase [Escherichia coli H591]
 gi|331077677|gb|EGI48889.1| tRNA nucleotidyltransferase [Escherichia coli H299]
 gi|332084483|gb|EGI89678.1| ribonuclease PH [Shigella dysenteriae 155-74]
 gi|332084823|gb|EGI90006.1| ribonuclease PH [Shigella boydii 5216-82]
 gi|332089330|gb|EGI94434.1| ribonuclease PH [Shigella boydii 3594-74]
 gi|332104939|gb|EGJ08285.1| ribonuclease PH [Shigella sp. D9]
          Length = 238

 Score =  245 bits (626), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 126/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D LQ +    N    +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALQKL--VENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238


>gi|134095311|ref|YP_001100386.1| RNase PH [Herminiimonas arsenicoxydans]
 gi|133739214|emb|CAL62263.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Herminiimonas arsenicoxydans]
          Length = 244

 Score =  245 bits (625), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 122/238 (51%), Positives = 163/238 (68%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  + +R I   R  +K+AEGS L++ GDT ++ TA++E++VP +++    GW+TA
Sbjct: 6   RPSGRAADALRAIKFIRNYTKHAEGSVLIECGDTKVICTASIEDRVPGFLKGKGQGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R+ REA  G+Q GR+QEIQR+IGR+LR+  DL A G R + +DCDVIQA
Sbjct: 66  EYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRSLRAAFDLQAFGERTLHLDCDVIQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITG  VA +D    +   +     +  LK  VAAIS G+  G P++DLDY E
Sbjct: 126 DGGTRTAAITGTMVAAYDAFSKL--VAQNVIPAIPLKHFVAAISVGVYKGQPVLDLDYDE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMTD+GH +EVQG+AE A F +     +L+LA+D I DLI +QK  ++
Sbjct: 184 DSDCDTDMNIVMTDAGHFIEVQGTAEGAAFDRATMDRLLDLAQDGIRDLIVMQKQALA 241


>gi|134300519|ref|YP_001114015.1| ribonuclease PH [Desulfotomaculum reducens MI-1]
 gi|172044340|sp|A4J7Y7|RNPH_DESRM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|134053219|gb|ABO51190.1| RNAse PH [Desulfotomaculum reducens MI-1]
          Length = 245

 Score =  245 bits (625), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 120/241 (49%), Positives = 169/241 (70%), Gaps = 6/241 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR++ Q+R + +T   +KYAEGS L++ GDT ++ TAT+EE+VP +++    GW+TA
Sbjct: 3   RVDGRKQGQIRPVRMTPNYNKYAEGSVLIEVGDTRVICTATVEERVPPFLKGLGKGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+TG+R  REA  G+ GGR+ EIQR+IGRALRSVV+L ALG R + +DCDVIQA
Sbjct: 63  EYSMLPRATGSRTIREAARGKLGGRTMEIQRLIGRALRSVVNLEALGERSLTMDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           DGGTRTA+ITGA+VA+   L  +  +    K  +S      +AA S G++ G P++DL Y
Sbjct: 123 DGGTRTASITGAYVAMIFALNRLVEQGMLEKIPVSD----FIAATSVGIVKGRPVIDLCY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  +VD N VMT +G  VE+QG+ E ATFS++    +L+LA   I +L K+Q+ V+ 
Sbjct: 179 AEDSVAEVDMNVVMTGTGRFVEIQGTGEEATFSREEMNQLLDLAAAGIEELNKVQRQVLG 238

Query: 240 N 240
           +
Sbjct: 239 D 239


>gi|323701932|ref|ZP_08113601.1| ribonuclease PH [Desulfotomaculum nigrificans DSM 574]
 gi|323533018|gb|EGB22888.1| ribonuclease PH [Desulfotomaculum nigrificans DSM 574]
          Length = 250

 Score =  245 bits (625), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 117/241 (48%), Positives = 167/241 (69%), Gaps = 2/241 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R + +T   +KYAEGS L++ GDT ++ TAT+E++VP +++    GW+TA
Sbjct: 3   RVDGRTPGQIRPVKITANYNKYAEGSVLIEIGDTRVICTATVEDRVPPFLKGLGKGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY M+PR+TG R  REA  G+  GR+ EIQR+IGRALRSVVDL ALG R + +DCDVIQA
Sbjct: 63  EYSMIPRATGTRTTREAAKGKLSGRTMEIQRLIGRALRSVVDLEALGERMVTMDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRT++ITGA+VA+   L  + +     ++   +   +AA S G++ G P++DL Y E
Sbjct: 123 DGGTRTSSITGAYVAMILALNKLVEQGMLEKIP--VNDFIAATSVGIVNGTPVLDLCYAE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  +VD N V+T +G  VE+QG+ E ATFS+D    +L+LA   I +LIK+Q+ V+  E
Sbjct: 181 DSAAEVDMNVVLTGTGRFVEIQGTGEEATFSRDEMNQLLDLAAAGIKELIKVQQQVLGPE 240

Query: 242 V 242
           +
Sbjct: 241 I 241


>gi|992693|gb|AAB01514.1| RNase PH [Caulobacter crescentus CB15]
          Length = 238

 Score =  245 bits (625), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 119/233 (51%), Positives = 164/233 (70%), Gaps = 3/233 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +Q+R ++L   V++YA  + L+ FG T +L TAT+EE VP W+RN   GW+T
Sbjct: 1   MRPSERAPDQLRAVTLETGVNRYAR-ALLIGFGHTKVLVTATVEENVPGWMRNKGAGWVT 59

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDV+Q
Sbjct: 60  AEYGMLPRATHTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVVQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVAL    +++ D     +   +L G VAA+SCG+  G P++DLDY 
Sbjct: 120 ADGGTRTAAITGAWVALRLATKYLLD-EGVLKTDPIL-GQVAAVSCGVFNGVPVLDLDYE 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           EDS  + D+NFV+T  G IVE+Q + E   F++  F ++    ++ +   ++L
Sbjct: 178 EDSNAEADSNFVLTGVGDIVEIQATGETRGFTRAEFESLYGAGREGVQRTVRL 230


>gi|257454134|ref|ZP_05619407.1| ribonuclease PH [Enhydrobacter aerosaccus SK60]
 gi|257448462|gb|EEV23432.1| ribonuclease PH [Enhydrobacter aerosaccus SK60]
          Length = 238

 Score =  245 bits (625), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 121/238 (50%), Positives = 167/238 (70%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R+ NQ+R +S  R  +K+AEG+ LV +GDT +L TA++E +VP W++ T  GWIT
Sbjct: 1   MRIDNRENNQLRPMSFVRNFTKHAEGAVLVSYGDTKVLCTASIETQVPRWLKGTGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA  G+Q GR+QEIQR+IGR+LR++VDL  LG   I IDCDV+Q
Sbjct: 61  AEYGMLPRATHERTQREAAKGKQSGRTQEIQRLIGRSLRAMVDLEKLGENTIHIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L+ ++  + K + +  L G VAA+S G+  G  ++DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALVDALEKLQ-AAKKLK-ADPLVGLVAAVSVGIKNGEVLLDLNYS 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS+ D D N VMT  G  +E+QG+AE   F++     ML +A++ I  LI  Q+ V+
Sbjct: 179 EDSSCDTDLNVVMTQKGEFIEIQGTAEEKPFTRAQADEMLAIAEEGIKQLIAEQQAVL 236


>gi|53802880|ref|YP_115411.1| ribonuclease PH [Methylococcus capsulatus str. Bath]
 gi|61215834|sp|Q602N9|RNPH_METCA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|53756641|gb|AAU90932.1| ribonuclease PH [Methylococcus capsulatus str. Bath]
          Length = 243

 Score =  245 bits (625), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 121/238 (50%), Positives = 169/238 (71%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +Q+R I+ T   +K+AEGS LV+FGDT ++ TA++EE+VP +++    GWIT
Sbjct: 1   MRPSGRRPDQLRRIAFTCNYTKHAEGSVLVEFGDTRVICTASVEERVPPFLKGKGSGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+IGR+LR+ ++L ALG R + +DCDVIQ
Sbjct: 61  AEYGMLPRATHERTGREAARGKQGGRTMEIQRLIGRSLRAALNLEALGERTVTLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +VAL   +Q +   S K + + V  G +A++S G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGGYVALVLAVQRLLK-SRKIKTNPV-HGQIASVSVGICQGVPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           ED   + D N VM D+G  +E+QG+AE   F +D   AML LA+  IADL+  Q++ +
Sbjct: 179 EDCDAETDMNVVMNDAGAFIEIQGTAEGHAFRRDELDAMLRLAEAGIADLLLHQQEAL 236


>gi|226942447|ref|YP_002797520.1| ribonuclease PH [Azotobacter vinelandii DJ]
 gi|259494117|sp|C1DI48|RNPH_AZOVD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226717374|gb|ACO76545.1| ribonuclease PH [Azotobacter vinelandii DJ]
          Length = 239

 Score =  245 bits (625), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 123/239 (51%), Positives = 164/239 (68%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +++AEGS LV+FGDT ++ T + E  VP +++    GW+TA
Sbjct: 3   RPSGRAPHQLRPIRITRNYTRHAEGSVLVEFGDTRVICTVSAEAGVPRFLKGQGKGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R+ REA  GRQGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERMAREASRGRQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++           LK  VAA+S G+  G PI+DLDY E
Sbjct: 123 DGGTRTASITGAMVALVDALAVLK--KRGALKGDPLKQMVAAVSVGIYQGEPILDLDYPE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMTD+G  +EVQG+AE   F  +   AML LA   I +L +LQ+ V+++
Sbjct: 181 DSDAETDLNVVMTDAGGFIEVQGTAEGEPFQPEELNAMLALATQGIRELFELQRAVLAD 239


>gi|198284080|ref|YP_002220401.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667606|ref|YP_002426735.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198248601|gb|ACH84194.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519819|gb|ACK80405.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 242

 Score =  245 bits (625), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 125/235 (53%), Positives = 164/235 (69%), Gaps = 4/235 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R SGR  + +R + +TR  +K+AEGS L+  GDT +L TA++EEKVP ++R    GW+T
Sbjct: 2   IRPSGRNADALRPVQVTRNFTKHAEGSVLIACGDTKVLCTASVEEKVPPFLRGAGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  RV RE+  GR GGR+ EIQR+IGR+LR+ VDL ALG R I +DCDV+Q
Sbjct: 62  AEYSMLPRATRERVARESAKGRIGGRTHEIQRLIGRSLRAAVDLQALGERTIWVDCDVLQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-SQVLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA +A+ D +QH+       QL +  L+  VAA+S G+  G  ++DLDY
Sbjct: 122 ADGGTRTASITGACLAVADAVQHLRTVG---QLRNNPLRDWVAAVSVGVYQGQAVLDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            EDS  DVD N VMT +G  VEVQG+AE A FS +    ML LA+  IA+L+  Q
Sbjct: 179 AEDSNADVDMNVVMTGAGAFVEVQGTAEGAVFSAEQMAEMLALARKGIAELVARQ 233


>gi|15600527|ref|NP_254021.1| ribonuclease PH [Pseudomonas aeruginosa PAO1]
 gi|116053481|ref|YP_793808.1| ribonuclease PH [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894437|ref|YP_002443307.1| ribonuclease PH [Pseudomonas aeruginosa LESB58]
 gi|254237972|ref|ZP_04931295.1| ribonuclease PH [Pseudomonas aeruginosa C3719]
 gi|254243780|ref|ZP_04937102.1| ribonuclease PH [Pseudomonas aeruginosa 2192]
 gi|296392194|ref|ZP_06881669.1| ribonuclease PH [Pseudomonas aeruginosa PAb1]
 gi|313106761|ref|ZP_07792977.1| ribonuclease PH [Pseudomonas aeruginosa 39016]
 gi|12230959|sp|P50597|RNPH_PSEAE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|122256498|sp|Q02E28|RNPH_PSEAB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736925|sp|B7V5M5|RNPH_PSEA8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|46015434|pdb|1R6M|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
           From Pseudomonas Aeruginosa In Complex With Phosphate
 gi|9951653|gb|AAG08719.1|AE004946_3 ribonuclease PH [Pseudomonas aeruginosa PAO1]
 gi|115588702|gb|ABJ14717.1| ribonuclease PH [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126169903|gb|EAZ55414.1| ribonuclease PH [Pseudomonas aeruginosa C3719]
 gi|126197158|gb|EAZ61221.1| ribonuclease PH [Pseudomonas aeruginosa 2192]
 gi|218774666|emb|CAW30483.1| ribonuclease PH [Pseudomonas aeruginosa LESB58]
 gi|310879479|gb|EFQ38073.1| ribonuclease PH [Pseudomonas aeruginosa 39016]
          Length = 239

 Score =  244 bits (624), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 124/238 (52%), Positives = 163/238 (68%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T + E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R +REA  G+QGGR+ EIQR+IGR+LR+ +DLS LG   + IDCDVIQA
Sbjct: 63  EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++           LK  VAA+S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGATVALIDALAVLK--KRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  + D N VMTD+G  +EVQG+AE A F      AML LA+  + +L +LQ+  ++
Sbjct: 181 DSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALA 238


>gi|218551172|ref|YP_002384963.1| ribonuclease PH [Escherichia fergusonii ATCC 35469]
 gi|218560715|ref|YP_002393628.1| ribonuclease PH [Escherichia coli S88]
 gi|218691927|ref|YP_002400139.1| ribonuclease PH [Escherichia coli ED1a]
 gi|218702410|ref|YP_002410039.1| ribonuclease PH [Escherichia coli IAI39]
 gi|218707277|ref|YP_002414796.1| ribonuclease PH [Escherichia coli UMN026]
 gi|26110719|gb|AAN82903.1|AE016769_18 Ribonuclease PH [Escherichia coli CFT073]
 gi|91074734|gb|ABE09615.1| ribonuclease PH [Escherichia coli UTI89]
 gi|218358713|emb|CAQ91369.1| ribonuclease PH [Escherichia fergusonii ATCC 35469]
 gi|218367484|emb|CAR05266.1| ribonuclease PH [Escherichia coli S88]
 gi|218372396|emb|CAR20270.1| ribonuclease PH [Escherichia coli IAI39]
 gi|218429491|emb|CAR10314.1| ribonuclease PH [Escherichia coli ED1a]
 gi|218434374|emb|CAR15299.1| ribonuclease PH [Escherichia coli UMN026]
          Length = 246

 Score =  244 bits (624), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 126/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 9   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 69  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D LQ +    N    +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 129 ADGGTRTASITGACVALADALQKL--VENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 186

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 187 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 246


>gi|288942595|ref|YP_003444835.1| ribonuclease PH [Allochromatium vinosum DSM 180]
 gi|288897967|gb|ADC63803.1| ribonuclease PH [Allochromatium vinosum DSM 180]
          Length = 241

 Score =  244 bits (624), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 119/240 (49%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R+ ++ R I  TR  +++AEGS LV+FGDT +L TA++E +VP +++    GWIT
Sbjct: 1   MRPSQRRPDEARPICFTRGFTRHAEGSVLVEFGDTRVLCTASVEPRVPPFLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG R+ REA  G+QGGR+ EIQR+IGRALR+ V L+ALG R I +DCDV+Q
Sbjct: 61  AEYGMLPRSTGERMPREAARGKQGGRTLEIQRLIGRALRAAVYLNALGERTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVAL + + H+   ++    +  +K  +AA+S G+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGAWVALREAIDHL--LASGQLTADPIKTQIAAVSVGIYQGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS+ + D N VM   G  +EVQG+AE   F++    A+L L    I  +   Q+  + +
Sbjct: 179 EDSSAETDMNLVMDGEGRFIEVQGTAEGHPFTRAELDALLELGAAGIRSIQAAQRAALED 238


>gi|238902734|ref|YP_002928530.1| defective ribonuclease PH [Escherichia coli BW2952]
 gi|298351813|sp|P0CG18|RNPH_ECOBW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|238860742|gb|ACR62740.1| defective ribonuclease PH [Escherichia coli BW2952]
 gi|260447338|gb|ACX37760.1| ribonuclease PH [Escherichia coli DH1]
 gi|315138225|dbj|BAJ45384.1| ribonuclease PH [Escherichia coli DH1]
          Length = 238

 Score =  244 bits (624), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 126/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D LQ +    N    +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALQKL--VENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGGIESIVATQKAALAN 238


>gi|188495519|ref|ZP_03002789.1| ribonuclease PH [Escherichia coli 53638]
 gi|188490718|gb|EDU65821.1| ribonuclease PH [Escherichia coli 53638]
 gi|332345611|gb|AEE58945.1| ribonuclease PH [Escherichia coli UMNK88]
          Length = 238

 Score =  244 bits (624), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 126/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D LQ +    N    +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALQKL--VENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238


>gi|110643884|ref|YP_671614.1| ribonuclease PH [Escherichia coli 536]
 gi|191170501|ref|ZP_03032054.1| ribonuclease PH [Escherichia coli F11]
 gi|300983477|ref|ZP_07176624.1| ribonuclease PH [Escherichia coli MS 200-1]
 gi|306816009|ref|ZP_07450147.1| ribonuclease PH [Escherichia coli NC101]
 gi|123048705|sp|Q0TBG6|RNPH_ECOL5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|110345476|gb|ABG71713.1| ribonuclease PH [Escherichia coli 536]
 gi|190909309|gb|EDV68895.1| ribonuclease PH [Escherichia coli F11]
 gi|300306941|gb|EFJ61461.1| ribonuclease PH [Escherichia coli MS 200-1]
 gi|305850405|gb|EFM50862.1| ribonuclease PH [Escherichia coli NC101]
 gi|324012723|gb|EGB81942.1| ribonuclease PH [Escherichia coli MS 60-1]
          Length = 238

 Score =  244 bits (624), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 126/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D LQ +    N    +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALQKL--VENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVVTQKAALAN 238


>gi|261400742|ref|ZP_05986867.1| tRNA nucleotidyltransferase [Neisseria lactamica ATCC 23970]
 gi|269209512|gb|EEZ75967.1| tRNA nucleotidyltransferase [Neisseria lactamica ATCC 23970]
          Length = 242

 Score =  244 bits (624), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 116/236 (49%), Positives = 169/236 (71%), Gaps = 2/236 (0%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
           + R  + +R+I +T     + +GSCL++ G+T ++ TA+++E VP ++R    GW+TAEY
Sbjct: 7   TSRAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVTAEY 66

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           GMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADG
Sbjct: 67  GMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
           GTRTA+ITGA+VALH  +  +   S+       ++  VAAIS G++ G P++DLDY EDS
Sbjct: 127 GTRTASITGAFVALHIAVGKL--ISDGILTENPIREAVAAISAGIVGGVPLLDLDYPEDS 184

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
             D D N VMT SG I+E+QG+AE A FS +    ++ LA+  I +L++ Q++ +S
Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEGAPFSLEELGKLIGLAEKGIGELLRYQQNALS 240


>gi|117617491|ref|YP_858647.1| ribonuclease PH [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117558898|gb|ABK35846.1| ribonuclease PH [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 257

 Score =  244 bits (624), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 126/239 (52%), Positives = 165/239 (69%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R S R   Q+R +++TR  +K+AEGS LV+FG+T +L TA+++  VP +++    GW+TA
Sbjct: 22  RPSDRTAAQLRPVTITRHFTKHAEGSVLVEFGNTRVLCTASVDTSVPRFLKGKNQGWVTA 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST +R+ REA SG+Q GR+ EI R+I R+LR+ VDL+ALG   I +DCDV+QA
Sbjct: 82  EYGMLPRSTHSRMNREAASGKQSGRTLEISRLIARSLRAAVDLTALGEHSITVDCDVLQA 141

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTAAITGA VAL D L  M +   K  L Q  LK  +AA+S GM  G  I DL+Y 
Sbjct: 142 DGGTRTAAITGACVALVDALNWMVE---KGMLKQSPLKQMIAAVSVGMYQGEAICDLEYI 198

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    ML LAK  IAD+I LQK  ++
Sbjct: 199 EDSAAETDMNVVMTEDGRIIEVQGTAEAEPFTHEELLEMLALAKGGIADIIALQKQSLA 257


>gi|85060191|ref|YP_455893.1| ribonuclease PH [Sodalis glossinidius str. 'morsitans']
 gi|123518740|sp|Q2NQT7|RNPH_SODGM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|84780711|dbj|BAE75488.1| ribonuclease PH [Sodalis glossinidius str. 'morsitans']
          Length = 239

 Score =  244 bits (623), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 123/239 (51%), Positives = 164/239 (68%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R +++TR  +++AEGS L+ FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSVQQVRPVTITRHFTRHAEGSVLIAFGDTRVLCTASVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I R+LR+ VDL+ LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNPREAAKGKQGGRTLEIQRLIARSLRAAVDLTKLGEYTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-SQVLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA VAL D L  M+    K QL +  +KG VAAIS G++ G  + DL+Y
Sbjct: 121 ADGGTRTASITGACVALADALSSMQ---KKGQLKTNPMKGFVAAISVGIVAGEAVCDLEY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS  + D N VM + G ++EVQG+AE   FSQ     +L LA+  I  L++ QK  +
Sbjct: 178 VEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSQQELNTLLELARGGIDSLVQAQKAAL 236


>gi|212635008|ref|YP_002311533.1| ribonuclease PH [Shewanella piezotolerans WP3]
 gi|226736939|sp|B8CM22|RNPH_SHEPW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|212556492|gb|ACJ28946.1| Ribonuclease PH [Shewanella piezotolerans WP3]
          Length = 237

 Score =  244 bits (623), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 121/239 (50%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q R +++TR+ + +AEGS LV+FGDT +L TA+ EE VP +++    GW+T
Sbjct: 1   MRPSNRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+Q GR+QEIQR+IGR+LR+ VD+  LG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D L            +  LK  +AA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G ++E+QG+AE   F+ +   ++L+LAK  I +++ +QK  +S
Sbjct: 179 EDSAAETDMNVVMTETGKMIEIQGTAEGEPFTHEELLSLLDLAKHGIREIVDIQKASLS 237


>gi|71066420|ref|YP_265147.1| ribonuclease PH [Psychrobacter arcticus 273-4]
 gi|123647900|sp|Q4FQJ5|RNPH_PSYA2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|71039405|gb|AAZ19713.1| RNAse PH [Psychrobacter arcticus 273-4]
          Length = 238

 Score =  244 bits (623), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 122/238 (51%), Positives = 164/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R+ NQ+R IS  R  +K+AEGS LV FGDT +L TA++E  VP W++    GWIT
Sbjct: 1   MRIDNRELNQLRSISFERHYTKHAEGSVLVSFGDTKVLCTASVESGVPRWLKGKGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA  G+Q GR+QEIQR+IGR+LR+++DLS LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMIDLSKLGENTIYLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA +AL D L+ ++    K   +  L G VAA+S GM  G   +DL+Y 
Sbjct: 121 ADGGTRTASVTGAAIALIDALESIQ--KTKKLKADPLIGLVAAVSVGMKDGEAYLDLNYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           ED++ D D N VMT  G  +E+QG+AE   F++     ML LA+  IA+LI +QK  +
Sbjct: 179 EDASCDTDLNVVMTQKGEFIELQGTAEEKPFTRAQADDMLVLAEKGIAELIAMQKTAL 236


>gi|330831556|ref|YP_004394508.1| RNase PH [Aeromonas veronii B565]
 gi|328806692|gb|AEB51891.1| RNase PH [Aeromonas veronii B565]
          Length = 238

 Score =  244 bits (623), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 125/239 (52%), Positives = 165/239 (69%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R S R   Q+R +++TR  +K+AEGS LV+FG+T +L TA+++  VP +++    GW+TA
Sbjct: 3   RPSDRSAAQLRPVTITRNFTKHAEGSVLVEFGNTRVLCTASVDTSVPRFLKGKNQGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST +R+ REA SG+Q GR+ EI R+I R+LR+ VDL+ALG   I +DCDV+QA
Sbjct: 63  EYGMLPRSTHSRMNREAASGKQSGRTLEISRLIARSLRAAVDLTALGEHSITVDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTA+ITGA VAL D L  M +   K  + Q  LK  +AA+S GM  G  I DL+Y 
Sbjct: 123 DGGTRTASITGACVALVDALNWMVE---KGMIKQSPLKQMIAAVSVGMYQGEAICDLEYI 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    ML LAK  IAD+I LQK  +S
Sbjct: 180 EDSAAETDMNVVMTEDGRIIEVQGTAEAEPFTHEELLEMLALAKGGIADIIALQKQSLS 238


>gi|237748601|ref|ZP_04579081.1| ribonuclease PH [Oxalobacter formigenes OXCC13]
 gi|229379963|gb|EEO30054.1| ribonuclease PH [Oxalobacter formigenes OXCC13]
          Length = 247

 Score =  244 bits (623), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 124/243 (51%), Positives = 163/243 (67%), Gaps = 6/243 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R +GR  + MR I   R  +KYAEGS L  FGDT ++ TA++EE VP ++R    GW+T
Sbjct: 7   IRANGRPLDSMRSIEFIRNYTKYAEGSVLTVFGDTKVICTASIEESVPPFLRGRGRGWLT 66

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  GRQ GR+QEIQR+IGR++R+  DL A G R + +DCDVIQ
Sbjct: 67  AEYGMLPRSTHTRMDREAARGRQSGRTQEIQRLIGRSIRAAFDLDAFGERTLKLDCDVIQ 126

Query: 121 ADGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ADGGTRTA+I+G  +A +D    M  E   +K      L+  VAAIS G+  G P++DLD
Sbjct: 127 ADGGTRTASISGVMIAAYDAFSMMVEEGLIDKVP----LRHFVAAISVGVNQGVPLLDLD 182

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y EDST D D N VMT++G  VE+QG+AE   FS+     ML +A+  I++LI +QK V+
Sbjct: 183 YQEDSTCDTDMNVVMTEAGEFVEIQGTAEGGAFSRQTLNDMLGMAEKGISELIGMQKKVL 242

Query: 239 SNE 241
             E
Sbjct: 243 GLE 245


>gi|94496905|ref|ZP_01303479.1| RNase PH [Sphingomonas sp. SKA58]
 gi|94423581|gb|EAT08608.1| RNase PH [Sphingomonas sp. SKA58]
          Length = 238

 Score =  244 bits (623), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 119/211 (56%), Positives = 151/211 (71%), Gaps = 2/211 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +QMR I++    + +AEGSCLV FGDT +L TA++EEKVP ++R    GW+T
Sbjct: 1   MRPSGRAPDQMRNITMEPGFTIHAEGSCLVSFGDTRVLCTASVEEKVPPFLRGKGSGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI++DCDVIQ
Sbjct: 61  AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRTVVDLKALGERQIVVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+G+WVAL   +  +       Q   + K  VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAISGSWVALRIAVDKLLASGALTQDPIIQK--VAAISCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
           EDS  + DAN ++T  G   EVQ +AE A +
Sbjct: 179 EDSNAETDANLILTGDGKFAEVQATAEGAAY 209


>gi|124267890|ref|YP_001021894.1| tRNA nucleotidyltransferase [Methylibium petroleiphilum PM1]
 gi|124260665|gb|ABM95659.1| tRNA nucleotidyltransferase [Methylibium petroleiphilum PM1]
          Length = 241

 Score =  244 bits (623), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 124/239 (51%), Positives = 164/239 (68%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R  + +R +++TRR +K+AEGS L+ FGDT +L TA++EEKVP   R +  GW+TA
Sbjct: 5   RTQARAADALRPLTITRRYTKHAEGSVLIAFGDTKVLCTASVEEKVPPHKRGSGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR+V DL ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERSIHLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VA HD +  +     K   S + +  VAA+S G++ G P++DL+Y E
Sbjct: 125 DGGTRTAAITGAYVAAHDAVTWLL-AQGKIGASPI-REPVAAVSVGIVQGTPLLDLEYIE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  D D N VMT +GH +EVQG+AE A FS+     +L LA+  I  L+  Q   + +
Sbjct: 183 DSACDTDMNVVMTGAGHFIEVQGTAEGAAFSRAEMDRLLALAEQGIRTLVAAQAAALKD 241


>gi|145637126|ref|ZP_01792788.1| ribonuclease PH [Haemophilus influenzae PittHH]
 gi|145640205|ref|ZP_01795789.1| ribonuclease PH [Haemophilus influenzae R3021]
 gi|148825447|ref|YP_001290200.1| ribonuclease PH [Haemophilus influenzae PittEE]
 gi|229846361|ref|ZP_04466469.1| ribonuclease PH [Haemophilus influenzae 7P49H1]
 gi|166228284|sp|A5UAL6|RNPH_HAEIE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145269571|gb|EDK09512.1| ribonuclease PH [Haemophilus influenzae PittHH]
 gi|145274791|gb|EDK14653.1| ribonuclease PH [Haemophilus influenzae 22.4-21]
 gi|148715607|gb|ABQ97817.1| ribonuclease PH [Haemophilus influenzae PittEE]
 gi|229810454|gb|EEP46172.1| ribonuclease PH [Haemophilus influenzae 7P49H1]
 gi|309972566|gb|ADO95767.1| Ribonuclease PH [Haemophilus influenzae R2846]
          Length = 238

 Score =  244 bits (623), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 120/238 (50%), Positives = 166/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ R+I +TR  +K+AEGS LV+FGDT +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +    N    +  +KG V+AIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALCDAINSL--IENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK     +   Q++ +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREAL 236


>gi|213579701|ref|ZP_03361527.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 238

 Score =  244 bits (623), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 126/240 (52%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   +N    +  +KG VAA+S G++ G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   FS +    +L LA+  I  ++ +QK  + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVAMQKAALEN 238


>gi|21232680|ref|NP_638597.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66767292|ref|YP_242054.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. 8004]
 gi|188990329|ref|YP_001902339.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. B100]
 gi|24638173|sp|Q8P5T5|RNPH_XANCP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|81306727|sp|Q4UY39|RNPH_XANC8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736950|sp|B0RP96|RNPH_XANCB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|21114489|gb|AAM42521.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66572624|gb|AAY48034.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. 8004]
 gi|167732089|emb|CAP50281.1| ribonuclease PH [Xanthomonas campestris pv. campestris]
          Length = 241

 Score =  244 bits (623), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 122/238 (51%), Positives = 164/238 (68%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R + + R  +++AEGS LV FGDT +L TA++E +VP ++R    GW+TA
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPNFLRGKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +    +  +    L G VAA+S G+  G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  + +L +LQ+  ++
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGVGELFELQRAALA 240


>gi|93006978|ref|YP_581415.1| ribonuclease PH [Psychrobacter cryohalolentis K5]
 gi|122414849|sp|Q1Q8S2|RNPH_PSYCK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|92394656|gb|ABE75931.1| RNAse PH [Psychrobacter cryohalolentis K5]
          Length = 238

 Score =  244 bits (623), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 122/238 (51%), Positives = 164/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R+ NQ+R IS  R  +K+AEGS LV FGDT +L TA++E  VP W++    GWIT
Sbjct: 1   MRIDNRELNQLRSISFERHYTKHAEGSVLVSFGDTKVLCTASVESGVPRWLKGKGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA  G+Q GR+QEIQR+IGR+LR+++DLS LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMIDLSKLGENTIYLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA +AL D L+ ++    K   +  L G VAA+S GM  G   +DL+Y 
Sbjct: 121 ADGGTRTASVTGAAIALIDALESIQ--KTKKLKADPLIGLVAAVSVGMKDGKAYLDLNYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           ED++ D D N VMT  G  +E+QG+AE   F++     ML LA+  IA+LI +QK  +
Sbjct: 179 EDASCDTDLNVVMTQKGEFIELQGTAEEKPFTRAQADDMLILAEKGIAELIAMQKTAL 236


>gi|294011052|ref|YP_003544512.1| ribonuclease PH [Sphingobium japonicum UT26S]
 gi|292674382|dbj|BAI95900.1| ribonuclease PH [Sphingobium japonicum UT26S]
          Length = 238

 Score =  244 bits (622), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 118/211 (55%), Positives = 153/211 (72%), Gaps = 2/211 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +QMR+I++    + +AEGSCLV FGDT +L TA++EEKVP ++R    GW+T
Sbjct: 1   MRPSGRAPDQMRDITMEPGFTIHAEGSCLVSFGDTRVLCTASIEEKVPPFLRGKGSGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVDL  LG RQI++DCDVIQ
Sbjct: 61  AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDLQKLGERQIVVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+G+WVAL   +  +   S       +++  VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAISGSWVALRIAIDGLL-ASGALAEDPIVQ-KVAAISCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
           EDS  + DAN ++T  G   EVQ +AE AT+
Sbjct: 179 EDSNAEADANLILTGDGKFAEVQATAEGATY 209


>gi|82779134|ref|YP_405483.1| ribonuclease PH [Shigella dysenteriae Sd197]
 gi|309784379|ref|ZP_07679018.1| ribonuclease PH [Shigella dysenteriae 1617]
 gi|123561122|sp|Q329L3|RNPH_SHIDS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|81243282|gb|ABB63992.1| RNase PH [Shigella dysenteriae Sd197]
 gi|308927886|gb|EFP73354.1| ribonuclease PH [Shigella dysenteriae 1617]
          Length = 238

 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +AL D LQ +    N    +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACMALADALQKL--VENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238


>gi|254465231|ref|ZP_05078642.1| ribonuclease PH [Rhodobacterales bacterium Y4I]
 gi|206686139|gb|EDZ46621.1| ribonuclease PH [Rhodobacterales bacterium Y4I]
          Length = 224

 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 118/222 (53%), Positives = 161/222 (72%), Gaps = 2/222 (0%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
           +S+    +K+AEGSCL+K GDTH+L TAT+E++VP +I+ T  GW+TAEYGMLPR+T  R
Sbjct: 1   MSIETGFTKHAEGSCLIKVGDTHVLCTATIEDRVPPFIKGTGLGWVTAEYGMLPRATNTR 60

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
           ++REA SG+QGGR+ EIQR+IGRALR+ VD  ALG RQI +DCDV+QADGGTR A+ITG 
Sbjct: 61  MRREASSGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQADGGTRCASITGG 120

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
           WVAL   +  +    +   +  +L   V+A+SCG+  G P++DLDY EDS   VD NF+M
Sbjct: 121 WVALRLAVNKLMKAGD-VHIDPLLD-PVSAVSCGIYAGQPVLDLDYPEDSEAGVDGNFIM 178

Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           T SG ++EVQ SAE + FS+D    +++LA     +L ++QK
Sbjct: 179 TGSGKLIEVQMSAEGSVFSRDQMNELMDLAAKGTVELAEMQK 220


>gi|301382581|ref|ZP_07230999.1| ribonuclease PH [Pseudomonas syringae pv. tomato Max13]
 gi|302063052|ref|ZP_07254593.1| ribonuclease PH [Pseudomonas syringae pv. tomato K40]
 gi|302133600|ref|ZP_07259590.1| ribonuclease PH [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 240

 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 166/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L+ ++      +    LK  +AA S GM  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALADALKVIKK-RGGLKGGDPLKQMIAAASVGMYQGEPVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  +   AML LA+  + +L ++Q+  +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEMQRAALAD 240


>gi|170766572|ref|ZP_02901025.1| ribonuclease PH [Escherichia albertii TW07627]
 gi|170124010|gb|EDS92941.1| ribonuclease PH [Escherichia albertii TW07627]
          Length = 238

 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 126/240 (52%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +    N    +  +KG VAA+S G++ G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKL--VENGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238


>gi|119472968|ref|ZP_01614824.1| RNase PH (tRNA nucleotidyltransferase) [Alteromonadales bacterium
           TW-7]
 gi|119444637|gb|EAW25947.1| RNase PH (tRNA nucleotidyltransferase) [Alteromonadales bacterium
           TW-7]
          Length = 237

 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 127/239 (53%), Positives = 161/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  NQ+R +S TR  + +AEGS LV+FG+T +L TAT+E  VP +++    GWI 
Sbjct: 1   MRPSQRTPNQIRPVSFTRNYTLHAEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWIN 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHTRNAREASRGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L HM   +     S  LK  +AAIS G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASISGACVALVDALTHMR--AKGMINSNPLKHMIAAISVGIYKGQAISDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N ++T++G I+EVQG+AE   FS D    +L LAK  I ++I +QK  ++
Sbjct: 179 EDSAAETDMNVILTETGKIIEVQGTAEGEPFSFDELDELLTLAKHSIREIIDVQKQALA 237


>gi|16272231|ref|NP_438442.1| ribonuclease PH [Haemophilus influenzae Rd KW20]
 gi|68248879|ref|YP_247991.1| ribonuclease PH [Haemophilus influenzae 86-028NP]
 gi|229844976|ref|ZP_04465113.1| ribonuclease PH [Haemophilus influenzae 6P18H1]
 gi|260580844|ref|ZP_05848669.1| ribonuclease PH [Haemophilus influenzae RdAW]
 gi|319896608|ref|YP_004134801.1| ribonuclease ph [Haemophilus influenzae F3031]
 gi|1173102|sp|P44444|RNPH_HAEIN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|81336705|sp|Q4QNR6|RNPH_HAEI8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|1573239|gb|AAC21939.1| ribonuclease PH (rph) [Haemophilus influenzae Rd KW20]
 gi|68057078|gb|AAX87331.1| ribonuclease PH [Haemophilus influenzae 86-028NP]
 gi|229812110|gb|EEP47802.1| ribonuclease PH [Haemophilus influenzae 6P18H1]
 gi|260092467|gb|EEW76405.1| ribonuclease PH [Haemophilus influenzae RdAW]
 gi|317432110|emb|CBY80461.1| ribonuclease PH [Haemophilus influenzae F3031]
          Length = 238

 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/238 (50%), Positives = 166/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ R+I +TR  +K+AEGS LV+FGDT +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +    N    +  +KG V+AIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALCDAINGL--IENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK     +   Q++ +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREAL 236


>gi|326403855|ref|YP_004283937.1| ribonuclease PH [Acidiphilium multivorum AIU301]
 gi|325050717|dbj|BAJ81055.1| ribonuclease PH [Acidiphilium multivorum AIU301]
          Length = 243

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 117/237 (49%), Positives = 162/237 (68%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  + +R++ +    S++AEGS L++ G T +L  A++E +VP ++R    GW+TA
Sbjct: 6   RPSGRMADALRQVEIVTGFSRHAEGSALIRMGGTEVLCAASVEGRVPGFLRGAGQGWVTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVD +ALG   I +DCDV+ A
Sbjct: 66  EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVVDRTALGEMTITLDCDVLNA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR AAITGAWVAL   ++ +   +     +  L G VAA+SCG+  G P++DLDY E
Sbjct: 126 DGGTRCAAITGAWVALALAIRTLRKAN--VIATDPLIGQVAAVSCGVFGGVPVLDLDYAE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  + DANFV+T +G IVE+Q +AERATF +  F  +L LA+   A+L   Q+  +
Sbjct: 184 DSNAEADANFVLTGTGGIVEIQATAERATFEEATFGTLLGLARKGTAELFTAQRAAL 240


>gi|307822918|ref|ZP_07653148.1| ribonuclease PH [Methylobacter tundripaludum SV96]
 gi|307735693|gb|EFO06540.1| ribonuclease PH [Methylobacter tundripaludum SV96]
          Length = 345

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 122/241 (50%), Positives = 166/241 (68%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R+I  T   +K+AEGS LV+FGDT +L TA+++  VP +++    GWIT
Sbjct: 106 MRPSGRNPDQLRDIKFTCGFTKHAEGSVLVEFGDTRVLCTASVDRSVPRFLKGKGEGWIT 165

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA +G+QGGR+ EIQR+IGR+LR+ +DL ALG   I+IDCDV+Q
Sbjct: 166 AEYGMLPRSTHSRMGREASNGKQGGRTLEIQRLIGRSLRAAIDLKALGEHTIMIDCDVLQ 225

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +VAL   +Q M     K   +  L G +A++S G+  G P++DLDY 
Sbjct: 226 ADGGTRTASITGGFVALSLAVQKM--LKRKQIKTNPLHGQIASVSVGIYNGVPVLDLDYA 283

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM D+   +EVQG+AE   F ++   AML LA   I +L++ Q+  I N
Sbjct: 284 EDSNAETDMNVVMNDAAAFIEVQGTAEGHAFRKEELDAMLALAGSGIKELLEKQRFAIEN 343

Query: 241 E 241
            
Sbjct: 344 H 344


>gi|56707964|ref|YP_169860.1| ribonuclease PH [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670435|ref|YP_666992.1| ribonuclease PH [Francisella tularensis subsp. tularensis FSC198]
 gi|134302244|ref|YP_001122213.1| ribonuclease PH [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|208780450|ref|ZP_03247790.1| ribonuclease PH [Francisella novicida FTG]
 gi|224457045|ref|ZP_03665518.1| ribonuclease PH [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370452|ref|ZP_04986457.1| ribonuclease PH [Francisella tularensis subsp. tularensis FSC033]
 gi|254372353|ref|ZP_04987844.1| tRNA nucleotidyltransferase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254874766|ref|ZP_05247476.1| ribonuclease PH [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|61215787|sp|Q5NGI2|RNPH_FRATT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123169418|sp|Q14HY4|RNPH_FRAT1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228282|sp|A4IYU1|RNPH_FRATW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|54112559|gb|AAV28913.1| NT02FT0689 [synthetic construct]
 gi|56604456|emb|CAG45491.1| Ribonuclease PH [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320768|emb|CAL08874.1| Ribonuclease PH [Francisella tularensis subsp. tularensis FSC198]
 gi|134050021|gb|ABO47092.1| ribonuclease PH [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|151568695|gb|EDN34349.1| ribonuclease PH [Francisella tularensis subsp. tularensis FSC033]
 gi|151570082|gb|EDN35736.1| tRNA nucleotidyltransferase [Francisella novicida GA99-3549]
 gi|208743596|gb|EDZ89900.1| ribonuclease PH [Francisella novicida FTG]
 gi|254840765|gb|EET19201.1| ribonuclease PH [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159150|gb|ADA78541.1| ribonuclease PH [Francisella tularensis subsp. tularensis NE061598]
          Length = 235

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 116/231 (50%), Positives = 162/231 (70%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R + +T   +K+AEGS L++FGDT ++ TA++   VP + +++  GW+T
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGRALR+ VDL+A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +A+ D +++M+      + +  L   VAAIS G+    P++DLDY 
Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           EDS  + D N VM  +G I+E+QG+AE   FS++ F  ML LAK  I ++ 
Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIF 231


>gi|261377578|ref|ZP_05982151.1| tRNA nucleotidyltransferase [Neisseria cinerea ATCC 14685]
 gi|269146325|gb|EEZ72743.1| tRNA nucleotidyltransferase [Neisseria cinerea ATCC 14685]
          Length = 242

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 116/236 (49%), Positives = 169/236 (71%), Gaps = 2/236 (0%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
           + R  + +R+I +T     + +GSCL++ G+T ++ TA+++E VP ++R    GW+TAEY
Sbjct: 7   TSRAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVTAEY 66

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           GMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADG
Sbjct: 67  GMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
           GTRTA+ITGA+VALH  +  +   S+       ++  VAAIS G++ G P++DLDY EDS
Sbjct: 127 GTRTASITGAFVALHIAVGKL--ISDGILTENPIREAVAAISVGIVGGVPLLDLDYPEDS 184

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
             D D N VMT SG I+E+QG+AE A FS +    ++ LA+  I +L++ Q++ +S
Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEGAPFSLEELGKLIGLAEQGIRELVRYQQNALS 240


>gi|213970694|ref|ZP_03398819.1| ribonuclease ph rph [Pseudomonas syringae pv. tomato T1]
 gi|213924528|gb|EEB58098.1| ribonuclease ph rph [Pseudomonas syringae pv. tomato T1]
          Length = 262

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 166/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 25  RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 84

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 85  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 144

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L+ ++      +    LK  +AA S GM  G P++DLDY E
Sbjct: 145 DGGTRTASITGAMVALADALKVIKK-RGGLKGGDPLKQMIAAASVGMYQGEPVLDLDYLE 203

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  +   AML LA+  + +L ++Q+  +++
Sbjct: 204 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEMQRAALAD 262


>gi|88861108|ref|ZP_01135742.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas tunicata
           D2]
 gi|88816830|gb|EAR26651.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas tunicata
           D2]
          Length = 237

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 124/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  NQ+R ++ TR  + +AEGS LV+FG+T +L TAT+E  VP +++    GWIT
Sbjct: 1   MRPSERTLNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVEAGVPRFMKGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+ EIQR+I R+LR+ VDL ALG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHTRCDREAARGKQSGRTMEIQRLIARSLRAAVDLKALGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L HM   +     +  LK  +AAIS G+  G PI DL+Y 
Sbjct: 121 ADGGTRTASISGACVALVDALTHMR--AKGMINTNPLKYMIAAISVGIYKGEPITDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N +MT++G ++EVQG+AE   FS +    +L LAK  I ++I +QK  ++
Sbjct: 179 EDSAAETDMNVIMTETGKLIEVQGTAEAEPFSFEELDQLLTLAKHSIREIIDIQKQTLA 237


>gi|119475382|ref|ZP_01615735.1| ribonuclease PH [marine gamma proteobacterium HTCC2143]
 gi|119451585|gb|EAW32818.1| ribonuclease PH [marine gamma proteobacterium HTCC2143]
          Length = 239

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 124/234 (52%), Positives = 162/234 (69%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+REI++TR  + +AEGS LV FGDT ++ TA++E+ VP ++R T  GWITA
Sbjct: 3   RPSGRSIDQLREITITRNFTCHAEGSVLVTFGDTKVICTASVEKNVPHFLRGTGQGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG+R+ REA  G+QGGR+ EIQR+IGR+LR+ VDL  LG  QI IDCDVIQA
Sbjct: 63  EYGMLPRSTGDRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLKVLGENQITIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D +  M +          LK  +AA+S G+  G  ++DLDY E
Sbjct: 123 DGGTRTASITGACVALVDAITAMRE--QGIITGNPLKHMIAAVSVGIYQGTAVLDLDYAE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  + D N +MT+ G  +EVQG+AE   +S+     +L LA   I  LI+ Q+
Sbjct: 181 DSNAETDMNVIMTEQGGFIEVQGTAEGEPYSRIELDQLLGLADAGIQTLIEKQR 234


>gi|330813340|ref|YP_004357579.1| ribonuclease PH [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486435|gb|AEA80840.1| ribonuclease PH [Candidatus Pelagibacter sp. IMCC9063]
          Length = 237

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 119/234 (50%), Positives = 166/234 (70%), Gaps = 2/234 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R+  ++R+I +T    K A+ SCL+K GDTH++ TA++EEKVP W++ +  GW+TAEYGM
Sbjct: 5   RKNLELRKIEITTDFIKNADASCLIKSGDTHVVCTASIEEKVPRWLKGSGKGWVTAEYGM 64

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LPRST  R++RE+  G+ GGR+ EIQR+IGR+LR+ ++L  LG   I IDCDV+QADGGT
Sbjct: 65  LPRSTHERMRRESSVGKVGGRTSEIQRLIGRSLRASMNLKLLGEYLITIDCDVLQADGGT 124

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTA+ITG +VAL  C+  M     K      +K +VAAISCG++ G  ++DLDY EDS  
Sbjct: 125 RTASITGGFVALKKCIDLM--IKRKQINHNPIKSYVAAISCGIVNGEFLMDLDYEEDSQA 182

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DVD+N+VM D G I+E+Q + E+ T S++ F  ML  +K  IA++I LQK  +S
Sbjct: 183 DVDSNYVMNDKGDIIELQLTGEQTTCSEEEFMKMLRHSKSSIAEIITLQKKALS 236


>gi|301168926|emb|CBW28521.1| ribonuclease PH (pseudogene) [Haemophilus influenzae 10810]
          Length = 238

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 119/224 (53%), Positives = 161/224 (71%), Gaps = 2/224 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ R+I +TR  +K+AEGS LV+FGDT +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +    N    +  +KG V+AIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALCDAINGL--IENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAK 222


>gi|87121112|ref|ZP_01077003.1| ribonuclease PH [Marinomonas sp. MED121]
 gi|86163604|gb|EAQ64878.1| ribonuclease PH [Marinomonas sp. MED121]
          Length = 239

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 118/238 (49%), Positives = 166/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R++ +TR  +K+AEGS L++ GDT ++ TATL   VP +++    GWIT
Sbjct: 1   MRPSGRAVDQLRDLKITRNFTKHAEGSVLIECGDTKVICTATLVPGVPRFLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +RV REA  G+Q GR+ EIQR+IGR+LR+ VDL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRVDREAARGKQTGRTVEIQRLIGRSLRAAVDLKKLGEHTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +VAL D ++ + +   K + + ++   +AAIS G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGGFVALADAVKKLVE-RKKIKENPIVS-QIAAISVGVYKGEPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N +M D G  +E+QG+AE   FS +H   ML +A+  I ++++ Q+D +
Sbjct: 179 EDSNAETDMNVIMNDKGGFIEIQGTAEGEAFSDEHMMGMLKVARKGINEILQAQRDAL 236


>gi|254373825|ref|ZP_04989308.1| tRNA nucleotidyltransferase [Francisella novicida GA99-3548]
 gi|151571546|gb|EDN37200.1| tRNA nucleotidyltransferase [Francisella novicida GA99-3548]
          Length = 235

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 116/231 (50%), Positives = 161/231 (69%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R + +T   +K+AEGS L++FGDT ++ TA++   VP + +++  GW+T
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVSGVPKFKKDSGEGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGRALR+ VDL+A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +A+ D +++M+      + +  L   VAAIS G+    P++DLDY 
Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           EDS  + D N VM   G I+E+QG+AE   FS++ F  ML LAK  I ++ 
Sbjct: 181 EDSNAETDMNVVMNSKGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIF 231


>gi|118496994|ref|YP_898044.1| ribonuclease PH [Francisella tularensis subsp. novicida U112]
 gi|194324228|ref|ZP_03058002.1| ribonuclease PH [Francisella tularensis subsp. novicida FTE]
 gi|166228281|sp|A0Q4X5|RNPH_FRATN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|118422900|gb|ABK89290.1| ribonuclease PH [Francisella novicida U112]
 gi|194321675|gb|EDX19159.1| ribonuclease PH [Francisella tularensis subsp. novicida FTE]
          Length = 235

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 116/231 (50%), Positives = 162/231 (70%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R + +T   +K+AEGS L++FGDT ++ TA++   VP + +++  GW+T
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPEFKKDSGEGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGRALR+ VDL+A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +A+ D +++M+      + +  L   VAAIS G+    P++DLDY 
Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           EDS  + D N VM  +G I+E+QG+AE   FS++ F  ML LAK  I ++ 
Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIF 231


>gi|260913198|ref|ZP_05919680.1| tRNA nucleotidyltransferase [Pasteurella dagmatis ATCC 43325]
 gi|260632785|gb|EEX50954.1| tRNA nucleotidyltransferase [Pasteurella dagmatis ATCC 43325]
          Length = 238

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q R+I +TR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GW+T
Sbjct: 1   MRPNERANHQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEESVPRFLKGQNQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSVTLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +   +N    +  +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALCDAINGL--VANGTLKTNPIKGLVAAISVGIVDGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G ++EVQG+AE   F+ D    +L+LAK     +   Q+  ++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFNHDELLTLLDLAKQGCETIFVAQRQALA 237


>gi|332968500|gb|EGK07563.1| tRNA nucleotidyltransferase [Psychrobacter sp. 1501(2011)]
          Length = 238

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/238 (50%), Positives = 166/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R+ +Q+R ++  R  +K+AEGS LV FGDT +L TA++E  VP W++    GW+T
Sbjct: 1   MRIDNRELDQLRTVTFERNYTKHAEGSVLVCFGDTKVLCTASVESGVPRWLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA  G+Q GR+QEIQR+IGR+LR++VDL+ LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMVDLNKLGENTIYLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +AL D L+ ++    K   +  L G VAA+S G+  G  ++DL+Y 
Sbjct: 121 ADGGTRTASITGAAIALIDALESLQ--QKKKLKADPLVGLVAAVSVGVKNGEILLDLNYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS+ D D N VMT  G  +E+QG+AE   F++     ML +A+  IADLIKLQ+  +
Sbjct: 179 EDSSCDTDLNVVMTQKGEFIEIQGTAEEKPFTRAEADKMLAMAEKGIADLIKLQQTAL 236


>gi|145635181|ref|ZP_01790886.1| ribonuclease PH [Haemophilus influenzae PittAA]
 gi|145267602|gb|EDK07601.1| ribonuclease PH [Haemophilus influenzae PittAA]
          Length = 238

 Score =  243 bits (620), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/238 (50%), Positives = 166/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ R+I +TR  +K+AEGS LV+FGDT +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+Q GR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +    N    +  +KG V+AIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALCDAINSL--IENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK     +   Q++V+
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREVL 236


>gi|62263530|gb|AAX78169.1| unknown protein [synthetic construct]
          Length = 270

 Score =  243 bits (620), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 116/231 (50%), Positives = 162/231 (70%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R + +T   +K+AEGS L++FGDT ++ TA++   VP + +++  GW+T
Sbjct: 27  MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 86

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGRALR+ VDL+A+G   I +DCDVIQ
Sbjct: 87  AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 146

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +A+ D +++M+      + +  L   VAAIS G+    P++DLDY 
Sbjct: 147 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 206

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           EDS  + D N VM  +G I+E+QG+AE   FS++ F  ML LAK  I ++ 
Sbjct: 207 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIF 257


>gi|331007601|ref|ZP_08330748.1| Ribonuclease PH [gamma proteobacterium IMCC1989]
 gi|330418594|gb|EGG93113.1| Ribonuclease PH [gamma proteobacterium IMCC1989]
          Length = 239

 Score =  243 bits (620), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 123/229 (53%), Positives = 157/229 (68%), Gaps = 2/229 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q R I LT+  +K+AEGS L++FG+T ++ TA++E  VP ++R    GWITA
Sbjct: 3   RPSGRTPDQTRPIRLTKNFTKHAEGSVLIEFGETKVICTASIENSVPGFLRGQGKGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST +R+ REA  G+Q GR+ EIQR+IGR+LR+ VDL  LG R I IDCDVIQA
Sbjct: 63  EYGMLPRSTHSRMNREAARGKQTGRTVEIQRLIGRSLRAAVDLEVLGERTITIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  +   +N       L   +A+IS G+  G  ++DLDY E
Sbjct: 123 DGGTRTASITGACVALADALNKL--LANGTLKQNPLTRMIASISVGIYQGEAVLDLDYPE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           DS+ D D N VM D G ++EVQG+AE   FS+  F  ML LAK  I +L
Sbjct: 181 DSSADTDMNIVMADDGGMIEVQGTAEGEPFSEAEFMQMLTLAKKGIKEL 229


>gi|215488923|ref|YP_002331354.1| ribonuclease PH [Escherichia coli O127:H6 str. E2348/69]
 gi|254808587|sp|B7UM50|RNPH_ECO27 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|215266995|emb|CAS11440.1| ribonuclease PH [Escherichia coli O127:H6 str. E2348/69]
 gi|323965909|gb|EGB61357.1| ribonuclease PH [Escherichia coli M863]
 gi|323975137|gb|EGB70242.1| ribonuclease PH [Escherichia coli TW10509]
 gi|327250769|gb|EGE62471.1| ribonuclease PH [Escherichia coli STEC_7v]
          Length = 238

 Score =  243 bits (620), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/240 (52%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +    N    +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKL--VENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238


>gi|145639813|ref|ZP_01795414.1| ribonuclease PH [Haemophilus influenzae PittII]
 gi|145271031|gb|EDK10947.1| ribonuclease PH [Haemophilus influenzae PittII]
 gi|309750310|gb|ADO80294.1| Ribonuclease PH [Haemophilus influenzae R2866]
          Length = 238

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 119/224 (53%), Positives = 161/224 (71%), Gaps = 2/224 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ R+I +TR  +K+AEGS LV+FGDT +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +    N    +  +KG V+AIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALCDAINGL--IENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAK 222


>gi|303229137|ref|ZP_07315938.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-134-V-Col7a]
 gi|302516150|gb|EFL58091.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-134-V-Col7a]
          Length = 257

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 122/240 (50%), Positives = 163/240 (67%), Gaps = 4/240 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R   Q+R I +TR  ++YAEGS L++ G T ++ TAT+EE VP W++ +  GW+T
Sbjct: 1   MRSDNRTAGQLRPIKITRHFTEYAEGSVLIECGKTKVICTATIEENVPRWLKGSSQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY +LPRST  RV REA  G+Q GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYSLLPRSTKTRVSREAARGKQTGRTVEIQRLIGRALRAVVDLKALGERSITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D + +      KF ++       AAIS G+    PI DL Y 
Sbjct: 121 ADGGTRTASITGAFVALVDAIDYTFGGFGKFPITD----FCAAISVGIGPEGPITDLCYE 176

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N V T +G+++EVQG+ E  TFS+D    +L+LA+    +L+ +Q+DV+ +
Sbjct: 177 EDSAAVVDMNVVRTGAGNLIEVQGTGEHGTFSRDELNQLLDLAESATDELMAVQRDVLGS 236


>gi|89255778|ref|YP_513140.1| ribonuclease PH [Francisella tularensis subsp. holarctica LVS]
 gi|115314270|ref|YP_762993.1| tRNA nucleotidyltransferase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156501746|ref|YP_001427811.1| ribonuclease PH [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167009694|ref|ZP_02274625.1| ribonuclease PH [Francisella tularensis subsp. holarctica FSC200]
 gi|254367139|ref|ZP_04983171.1| ribonuclease PH [Francisella tularensis subsp. holarctica 257]
 gi|290954430|ref|ZP_06559051.1| ribonuclease PH [Francisella tularensis subsp. holarctica URFT1]
 gi|295312131|ref|ZP_06802940.1| ribonuclease PH [Francisella tularensis subsp. holarctica URFT1]
 gi|122325696|sp|Q0BNH8|RNPH_FRATO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|122501188|sp|Q2A562|RNPH_FRATH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228280|sp|A7NA52|RNPH_FRATF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|89143609|emb|CAJ78797.1| Ribonuclease PH [Francisella tularensis subsp. holarctica LVS]
 gi|115129169|gb|ABI82356.1| tRNA nucleotidyltransferase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134252961|gb|EBA52055.1| ribonuclease PH [Francisella tularensis subsp. holarctica 257]
 gi|156252349|gb|ABU60855.1| ribonuclease PH [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 235

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 116/231 (50%), Positives = 162/231 (70%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R + +T   +K+AEGS L++FGDT ++ TA++   VP + +++  GW+T
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGRALR+ VDL+A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +A+ D +++M+      + +  L   VAAIS G+    P++DLDY 
Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGILDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           EDS  + D N VM  +G I+E+QG+AE   FS++ F  ML LAK  I ++ 
Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIF 231


>gi|251793341|ref|YP_003008069.1| ribonuclease PH [Aggregatibacter aphrophilus NJ8700]
 gi|247534736|gb|ACS97982.1| ribonuclease PH [Aggregatibacter aphrophilus NJ8700]
          Length = 238

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 124/240 (51%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  NQ R I +TR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GW+T
Sbjct: 1   MRPNQRANNQTRPIKITRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGLGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   +N       LKG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALCDALNGL--VANGTLSKNPLKGLVAAISVGIVDGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK     + + Q+  +++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCDIIFQTQRAALAD 238


>gi|328676457|gb|AEB27327.1| Ribonuclease PH [Francisella cf. novicida Fx1]
          Length = 235

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 116/231 (50%), Positives = 161/231 (69%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R + +T   +K+AEGS L++FGDT ++ TA++   VP + +++  GW+T
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGRALR+ VDL+A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +A+ D +++M+      + +  L   VAAIS G+    P++DLDY 
Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           EDS  + D N VM   G I+E+QG+AE   FS++ F  ML LAK  I ++ 
Sbjct: 181 EDSNAETDMNVVMNSKGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIF 231


>gi|319786148|ref|YP_004145623.1| ribonuclease PH [Pseudoxanthomonas suwonensis 11-1]
 gi|317464660|gb|ADV26392.1| ribonuclease PH [Pseudoxanthomonas suwonensis 11-1]
          Length = 241

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R SGR  +Q+R + + R  +++AEGS LV FGDT +L TA+++ KVP ++R    GW+T
Sbjct: 4   VRPSGRAPDQLRPVRIERGFTRHAEGSVLVSFGDTRVLCTASIDNKVPAFLRGKGEGWVT 63

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+IGR LR+ +D  ALG R I +DCDV+Q
Sbjct: 64  AEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRTLRACIDRGALGERTITLDCDVLQ 123

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D ++ ++    + +   V  G VAA+S G+  G P++DLDY 
Sbjct: 124 ADGGTRTAAITGAYVALVDAVRWLQG-RGEIKRDPVF-GAVAAVSVGVYRGVPVLDLDYA 181

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  I  L++LQ+  ++ 
Sbjct: 182 EDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLALAETGIGQLLELQRQALAG 241


>gi|317403008|gb|EFV83546.1| ribonuclease PH [Achromobacter xylosoxidans C54]
          Length = 244

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 121/239 (50%), Positives = 167/239 (69%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +++R  SL R  ++YAEGS LVK G+TH+L TA++ EKVP +++    GW+TA
Sbjct: 9   RPSGRAVDELRPFSLERGFTRYAEGSVLVKAGNTHVLCTASVLEKVPPFLKGKGEGWVTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V D+ ALG R + +DCDV+QA
Sbjct: 69  EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMRALGERTLHLDCDVLQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS-QVLKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTR A+ITGAWVA  D +  +     +  L+   ++  VAA+S G++ G P++DLDY 
Sbjct: 129 DGGTRCASITGAWVAASDAVALL---MQRGDLAVNPIRDAVAAVSVGLVQGRPVLDLDYE 185

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N +MT  G  VEVQG+ E ATF++    AML LA++ IA L++ Q+  ++
Sbjct: 186 EDSACDADVNVIMTGGGAFVEVQGTGEGATFTRAELDAMLGLAENGIAGLVRAQRAALA 244


>gi|16762575|ref|NP_458192.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|16767019|ref|NP_462634.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29144064|ref|NP_807406.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56415624|ref|YP_152699.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161505731|ref|YP_001572843.1| ribonuclease PH [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|167549018|ref|ZP_02342777.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167995207|ref|ZP_02576297.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168233258|ref|ZP_02658316.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168235339|ref|ZP_02660397.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168241913|ref|ZP_02666845.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168260512|ref|ZP_02682485.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|168464958|ref|ZP_02698850.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168818436|ref|ZP_02830436.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194442896|ref|YP_002042983.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194448918|ref|YP_002047765.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194469845|ref|ZP_03075829.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194735193|ref|YP_002116668.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197249680|ref|YP_002148665.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197264642|ref|ZP_03164716.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197364551|ref|YP_002144188.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|198242269|ref|YP_002217694.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|200388670|ref|ZP_03215282.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204928479|ref|ZP_03219678.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|207858971|ref|YP_002245622.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213052654|ref|ZP_03345532.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|213425224|ref|ZP_03357974.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213615659|ref|ZP_03371485.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
 gi|213647931|ref|ZP_03377984.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
 gi|213852853|ref|ZP_03382385.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
 gi|238910231|ref|ZP_04654068.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289809748|ref|ZP_06540377.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
 gi|289824115|ref|ZP_06543712.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|61234148|sp|P0A2C3|RNPH_SALTY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61234155|sp|P0A2C4|RNPH_SALTI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|81599223|sp|Q5PC25|RNPH_SALPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043772|sp|A9MKN2|RNPH_SALAR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736931|sp|B5EXE7|RNPH_SALA4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736932|sp|B5FM66|RNPH_SALDC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736933|sp|B5R5G7|RNPH_SALEP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736935|sp|B4T9Y6|RNPH_SALHS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736936|sp|B4SXE4|RNPH_SALNS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736937|sp|B5BI17|RNPH_SALPK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736938|sp|B4TZY4|RNPH_SALSV RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|25289292|pir||AG0970 RNase PH [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16422302|gb|AAL22593.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16504880|emb|CAD03259.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29139700|gb|AAO71266.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56129881|gb|AAV79387.1| RNase PH [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|160867078|gb|ABX23701.1| hypothetical protein SARI_03907 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|194401559|gb|ACF61781.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194407222|gb|ACF67441.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194456209|gb|EDX45048.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194710695|gb|ACF89916.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195632399|gb|EDX50883.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197096028|emb|CAR61615.1| RNase PH [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|197213383|gb|ACH50780.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197242897|gb|EDY25517.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197291458|gb|EDY30810.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197936785|gb|ACH74118.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|199605768|gb|EDZ04313.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204321912|gb|EDZ07110.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205325541|gb|EDZ13380.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205327076|gb|EDZ13840.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205332556|gb|EDZ19320.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205338962|gb|EDZ25726.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205344359|gb|EDZ31123.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205350221|gb|EDZ36852.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|206710774|emb|CAR35135.1| RNase PH [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|261248882|emb|CBG26736.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|267995995|gb|ACY90880.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160271|emb|CBW19794.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhimurium
           str. SL1344]
 gi|312914760|dbj|BAJ38734.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320088154|emb|CBY97916.1| RNase PH [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321226787|gb|EFX51837.1| Ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322612900|gb|EFY09852.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618965|gb|EFY15852.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625258|gb|EFY22085.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322630074|gb|EFY26847.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322634266|gb|EFY31001.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635833|gb|EFY32542.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322643029|gb|EFY39606.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322645043|gb|EFY41574.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649857|gb|EFY46280.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322653064|gb|EFY49399.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322661117|gb|EFY57345.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662394|gb|EFY58607.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322667272|gb|EFY63438.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322674351|gb|EFY70444.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322678441|gb|EFY74502.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322680947|gb|EFY76981.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322687117|gb|EFY83090.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323132094|gb|ADX19524.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323195841|gb|EFZ81013.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323198242|gb|EFZ83348.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323200860|gb|EFZ85930.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323206614|gb|EFZ91572.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323210473|gb|EFZ95359.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216239|gb|EGA00967.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323220461|gb|EGA04915.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225325|gb|EGA09559.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323228439|gb|EGA12570.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323234260|gb|EGA18348.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323237245|gb|EGA21312.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323244764|gb|EGA28768.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323245861|gb|EGA29851.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323250956|gb|EGA34832.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323257296|gb|EGA40995.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323262220|gb|EGA45781.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323264569|gb|EGA48073.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323268858|gb|EGA52316.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326625479|gb|EGE31824.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
 gi|332990583|gb|AEF09566.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 238

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 126/240 (52%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   +N    +  +KG VAA+S G++ G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   FS +    +L LA+  I  ++  QK  + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 238


>gi|163750741|ref|ZP_02157977.1| ribonuclease PH [Shewanella benthica KT99]
 gi|161329585|gb|EDQ00577.1| ribonuclease PH [Shewanella benthica KT99]
          Length = 237

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q R +++TR+ + +AEGS LV+FG+T +L TA+ E  VP +++    GW+T
Sbjct: 1   MRPSDRTPAQSRPVTITRQFTAHAEGSVLVEFGETKVLCTASFEVGVPRFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGR+LR+ VD+ ALG   IIIDCDVIQ
Sbjct: 61  AEYGMLPRSTHTRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D L            +  LK  +AA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G ++E+QG+AE   FS +   +ML LAK  I +++ +QK  ++
Sbjct: 179 EDSEAETDMNVVMTETGQMIEIQGTAEGEPFSHEELLSMLELAKHGIREIVDVQKAALN 237


>gi|145589263|ref|YP_001155860.1| ribonuclease PH [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047669|gb|ABP34296.1| RNAse PH [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 246

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 122/237 (51%), Positives = 163/237 (68%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+   +R ++++R  +K+AEGS L+ FGDT +L TA++ +KVP   R +  GW+TA
Sbjct: 11  RPSGRKPKDLRPVTISRAFTKHAEGSVLIAFGDTKVLCTASILDKVPPHKRGSGEGWVTA 70

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+Q GR+QEIQR+IGRA+RSV +L  LG R I +DCDV+QA
Sbjct: 71  EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFNLKTLGERTIHLDCDVLQA 130

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA  D +  +       Q    +   VAAIS G+  G P++DLDY E
Sbjct: 131 DGGTRTASITGAYVAARDAVNQLLKSGALTQ--DPIIDSVAAISVGIYQGAPVLDLDYPE 188

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS+ D D N VMT  G ++EVQG+AE A FS+    A+L+LA+  I +L +LQ D +
Sbjct: 189 DSSCDTDMNVVMTGKGGMIEVQGTAEGAAFSRAELNALLDLAEQGIQELTQLQIDSL 245


>gi|187931269|ref|YP_001891253.1| ribonuclease PH [Francisella tularensis subsp. mediasiatica FSC147]
 gi|226736911|sp|B2SF43|RNPH_FRATM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|187712178|gb|ACD30475.1| ribonuclease PH [Francisella tularensis subsp. mediasiatica FSC147]
          Length = 235

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 117/231 (50%), Positives = 162/231 (70%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R + +T   +K+AEGS L++FGDT ++ TA++   VP + +++  GW+T
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGRALR+ VDL+A+G   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHMRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +A+ D +++M+      + +  L   VAAIS G+    P++DLDY 
Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           EDS  + D N VM  +G I+E+QG+AE   FS++ F  ML LAK  I ++ 
Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIF 231


>gi|328675533|gb|AEB28208.1| Ribonuclease PH [Francisella cf. novicida 3523]
          Length = 235

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 115/231 (49%), Positives = 162/231 (70%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R + +T   +K+AEGS L++FGDT ++ TA++   VP + +++  GW+T
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGRALR+ VDL+A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +A+ D +++M+      + +  L   VAA+S G+    P++DLDY 
Sbjct: 121 ADGGTRTASITGASLAIADAIKYMKQNGMLDEQANPLLSQVAAVSVGIYNNEPVLDLDYD 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           EDS  + D N VM  +G I+E+QG+AE   FS++ F  ML LAK  I ++ 
Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIF 231


>gi|167036328|ref|YP_001671559.1| ribonuclease PH [Pseudomonas putida GB-1]
 gi|189043769|sp|B0KQ94|RNPH_PSEPG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166862816|gb|ABZ01224.1| ribonuclease PH [Pseudomonas putida GB-1]
          Length = 240

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++      +    LK  +AA+S GM  G  ++DLDY E
Sbjct: 123 DGGTRTASITGAMVALCDALAVIKK-RGGLKAGNPLKHMIAAVSVGMYQGEAVLDLDYPE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  + F AML LA+  + ++ +LQ+  +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMNEIFELQQAALAD 240


>gi|148827427|ref|YP_001292180.1| ribonuclease PH [Haemophilus influenzae PittGG]
 gi|166228285|sp|A5UG91|RNPH_HAEIG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|148718669|gb|ABQ99796.1| ribonuclease PH [Haemophilus influenzae PittGG]
          Length = 238

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 120/238 (50%), Positives = 165/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ R+I +TR  +K+AEGS LV+FGDT +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+Q GR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +    N    +  +KG V+AIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALCDAINSL--IENGTLKTNPIKGLVSAISVGIVEGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK     +   Q+ V+
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQRKVL 236


>gi|171057396|ref|YP_001789745.1| ribonuclease PH [Leptothrix cholodnii SP-6]
 gi|170774841|gb|ACB32980.1| ribonuclease PH [Leptothrix cholodnii SP-6]
          Length = 241

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 123/234 (52%), Positives = 163/234 (69%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  + +R + +TR  +K+AEGS L++FGDT +L TA++EEKVP   + +  GW+TA
Sbjct: 5   RPLGRAADALRPVRITRSYTKHAEGSVLIEFGDTQVLCTASVEEKVPPHKKGSGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR V DL+ALG R I+IDCDV+QA
Sbjct: 65  EYGMLPRATHTRSAREAAKGKQSGRTQEIQRLIGRSLRCVFDLAALGERSILIDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +Q +     K + S + +  VAA+S G+L G  ++DL+Y E
Sbjct: 125 DGGTRTASITGAFVAAHDAVQGL-IAQGKLKRSPI-RDFVAAVSVGILDGVALLDLEYVE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  D D N VMT +G  VEVQG+AE   FS+     +L L    IA+L+  QK
Sbjct: 183 DSACDTDMNIVMTGAGGFVEVQGTAEGVAFSRAEMDQLLALGSAGIAELVAAQK 236


>gi|295396715|ref|ZP_06806861.1| tRNA nucleotidyltransferase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970461|gb|EFG46390.1| tRNA nucleotidyltransferase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 248

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 121/242 (50%), Positives = 167/242 (69%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GRQ N++RE+ +TR    +AEGS LV+FG T +L  A+L E VP W++    GW T
Sbjct: 1   MRFDGRQANELREVKITRGWLDHAEGSVLVEFGRTRVLCAASLTEGVPRWMKGEGRGWAT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+V+DLS LG   + +DCDV+Q
Sbjct: 61  AEYAMLPRATHTRSSRESVKGKIGGRTHEISRLIGRSLRAVLDLSKLGENTLQVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D +   ++     + ++VLK  VAAIS G++ G P++DL Y 
Sbjct: 121 ADGGTRTAAITGAYVALVDAVAKGKELGWIPKNAEVLKDSVAAISVGIVDGTPVLDLPYE 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDST + D N VMT SG  VEVQG+AE A F +    ++L+LA+   A+L ++Q   ++ 
Sbjct: 181 EDSTAETDMNVVMTGSGAFVEVQGTAEGAPFDRAELGSLLDLAEHGCAELARIQASALAQ 240

Query: 241 EV 242
           ++
Sbjct: 241 DL 242


>gi|294667389|ref|ZP_06732607.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292602830|gb|EFF46263.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 241

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R + + R  +++AEGS LV FGDT +L TA++E +VP ++R    GW+TA
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPGFLRGKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +    +  +    L G VAA+S G+  G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  + +L  LQ+  ++ 
Sbjct: 183 DSDCDTDMNVVMNDDGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQRAALAG 241


>gi|148264306|ref|YP_001231012.1| ribonuclease PH [Geobacter uraniireducens Rf4]
 gi|189043764|sp|A5G3S1|RNPH_GEOUR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|146397806|gb|ABQ26439.1| RNAse PH [Geobacter uraniireducens Rf4]
          Length = 238

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 121/239 (50%), Positives = 169/239 (70%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR    +RE+ +TR   K+AEGS L++FGDT ++ TA++E  VP ++R    GW+T
Sbjct: 1   MRFDGRGAESLREVKITRNYLKHAEGSVLIEFGDTKVICTASVEGSVPPFLRGKGTGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+ GGR+ EIQR+IGR+LR+V+D++ LG R ++IDCDVIQ
Sbjct: 61  AEYSMLPRATHTRSHRESSKGKVGGRTHEIQRLIGRSLRAVMDMNLLGERSVLIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL+D L  +     K +L+ + LK  VAA+S G++ G P++DL+Y
Sbjct: 121 ADGGTRTASITGAYVALYDALDGL---VKKGELAAMPLKEAVAAVSVGIVDGTPLLDLNY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS+ +VD NFVMT S   VEVQG+AE   F+ +   AM +LA   I  L ++QK+ +
Sbjct: 178 VEDSSAEVDMNFVMTSSNRFVEVQGTAEAEPFTVEQMDAMRDLAISGIKRLFQIQKEAL 236


>gi|229593356|ref|YP_002875475.1| ribonuclease PH [Pseudomonas fluorescens SBW25]
 gi|259494125|sp|C3K479|RNPH_PSEFS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|229365222|emb|CAY53520.1| ribonuclease PH [Pseudomonas fluorescens SBW25]
          Length = 240

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 165/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L+ ++      +    LK  +AA+S GM  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALVDALKVIKK-RGGLKAGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F      AML LA+  + ++ +LQ   +++
Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPADLNAMLALAQKGMTEIFELQNAALAD 240


>gi|145632517|ref|ZP_01788251.1| ribonuclease PH [Haemophilus influenzae 3655]
 gi|144986712|gb|EDJ93264.1| ribonuclease PH [Haemophilus influenzae 3655]
          Length = 238

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 121/239 (50%), Positives = 168/239 (70%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ R+I +TR  +K+AEGS LV+FGDT +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHM-EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA VAL D +  + E+ + K      +KG V+AIS G++ G  + DL+Y
Sbjct: 121 ADGGTRTASITGAAVALCDAINSLIENGTLKI---NPIKGLVSAISVGIVDGQAVCDLEY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK     +   Q++ +
Sbjct: 178 VEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREAL 236


>gi|21244122|ref|NP_643704.1| ribonuclease PH [Xanthomonas axonopodis pv. citri str. 306]
 gi|24638175|sp|Q8PH63|RNPH_XANAC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|21109751|gb|AAM38240.1| ribonuclease PH [Xanthomonas axonopodis pv. citri str. 306]
          Length = 241

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R + + R  +++AEGS LV FGDT +L TA++E +VP ++R    GW+TA
Sbjct: 5   RPSGRTADQLRPVRIERSFTRHAEGSVLVSFGDTRVLCTASVENRVPGFLRGKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +    +  +    L G VAA+S G+  G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALADAVNLLIKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  + +L  LQ+  ++ 
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQRAALAG 241


>gi|86159780|ref|YP_466565.1| ribonuclease PH [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123496476|sp|Q2IEX1|RNPH_ANADE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|85776291|gb|ABC83128.1| RNAse PH [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 239

 Score =  242 bits (618), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 127/236 (53%), Positives = 167/236 (70%), Gaps = 4/236 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR    +R I L  RVSK+AEGSCLV+FGDTH+L TA+++EKVP  +  T  GW+T
Sbjct: 1   MRKNGRGPLDLRPILLEPRVSKHAEGSCLVRFGDTHVLCTASVDEKVPPHVYGTGAGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R++REA  G+Q GR+ EIQR++GRALR+ VDL A+G R + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHERMQREAARGKQTGRTLEIQRLVGRALRAAVDLRAIGPRTVTLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTAAITGA+VAL   +Q +     + QL+   +K  VAA+S G++ G   +DLDY
Sbjct: 121 ADGGTRTAAITGAYVAL---VQAVRSIQKRKQLAHDPVKRSVAAVSVGIVAGEVHLDLDY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            EDST +VD N V T  G +VEVQG+AE   F++     ML+ A   ++ L +LQ+
Sbjct: 178 DEDSTAEVDMNVVATGEGALVEVQGTAEGKPFARAELDRMLDAALAGLSRLKELQE 233


>gi|294627116|ref|ZP_06705704.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|325918115|ref|ZP_08180270.1| RNAse PH [Xanthomonas vesicatoria ATCC 35937]
 gi|325922286|ref|ZP_08184067.1| RNAse PH [Xanthomonas gardneri ATCC 19865]
 gi|292598549|gb|EFF42698.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|325535661|gb|EGD07502.1| RNAse PH [Xanthomonas vesicatoria ATCC 35937]
 gi|325547239|gb|EGD18312.1| RNAse PH [Xanthomonas gardneri ATCC 19865]
          Length = 241

 Score =  242 bits (618), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R + + R  +++AEGS LV FGDT +L TA++E +VP ++R    GW+TA
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPGFLRGKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +    +  +    L G VAA+S G+  G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  + +L  LQ+  ++ 
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQRAALAG 241


>gi|78042648|ref|YP_359184.1| ribonuclease PH [Carboxydothermus hydrogenoformans Z-2901]
 gi|123577019|sp|Q3AFA0|RNPH_CARHZ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|77994763|gb|ABB13662.1| ribonuclease PH [Carboxydothermus hydrogenoformans Z-2901]
          Length = 254

 Score =  242 bits (618), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 127/240 (52%), Positives = 163/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+++Q+R + +T    K+AEGS L++ GDT ++ TAT+E+KVP + +    GWIT
Sbjct: 1   MRIDGREKDQLRTVKITTNYIKHAEGSVLIEMGDTRVVCTATVEDKVPPFAKGEGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  GRQ GR+ EIQR+IGRALR VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYGMLPRSTETRNVREATKGRQSGRTLEIQRLIGRALRGVVDLKALGERTLWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VAL   L  +            LK  VAA+S G++ G  I+DL++ 
Sbjct: 121 ADGGTRTAAITGSFVALALALNKL--VEEGILPVIPLKDFVAAVSVGIVDGEEILDLNFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VMT S   VEVQG+ E ATFS +    +L LA+  I +LI+LQK  + +
Sbjct: 179 EDSKALVDMNVVMTGSNRFVEVQGTGEEATFSMEELQRLLTLAQKGIRELIELQKQALGD 238


>gi|49082078|gb|AAT50439.1| PA5334 [synthetic construct]
          Length = 240

 Score =  242 bits (618), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 123/238 (51%), Positives = 162/238 (68%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T + E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTRVICTVSAESGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R +REA  G+QG R+ EIQR+IGR+LR+ +DLS LG   + IDCDVIQA
Sbjct: 63  EYGMLPRSTGERNQREASRGKQGSRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++           LK  VAA+S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGATVALIDALAVLK--KRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  + D N VMTD+G  +EVQG+AE A F      AML LA+  + +L +LQ+  ++
Sbjct: 181 DSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALA 238


>gi|62182227|ref|YP_218644.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|75479865|sp|Q57I99|RNPH_SALCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|62129860|gb|AAX67563.1| RNase PH [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. SC-B67]
 gi|322716715|gb|EFZ08286.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 238

 Score =  242 bits (618), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 125/240 (52%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVVQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   +N    +  +KG VAA+S G++ G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   FS +    +L LA+  I  ++  QK  + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 238


>gi|325579215|ref|ZP_08149171.1| tRNA nucleotidyltransferase [Haemophilus parainfluenzae ATCC 33392]
 gi|325159450|gb|EGC71584.1| tRNA nucleotidyltransferase [Haemophilus parainfluenzae ATCC 33392]
          Length = 238

 Score =  242 bits (618), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 119/238 (50%), Positives = 165/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q R I +TR  +K+AEGS LV+FGDT +L TA+++E VP +++    GW+T
Sbjct: 1   MRPNNRENHQPRPIKITRNYTKHAEGSVLVEFGDTKVLCTASVDESVPRFLKGQNQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +   +N    +  +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALCDAINGL--IANGTLKTNPIKGLVAAISVGIVEGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VM + G ++EVQG+AE   FS +    +L LAK     +   Q++ +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLGLAKQGCEQIFAAQREAL 236


>gi|52424307|ref|YP_087444.1| ribonuclease PH [Mannheimia succiniciproducens MBEL55E]
 gi|61215869|sp|Q65W01|RNPH_MANSM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|52306359|gb|AAU36859.1| Rph protein [Mannheimia succiniciproducens MBEL55E]
          Length = 240

 Score =  242 bits (618), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 119/224 (53%), Positives = 159/224 (70%), Gaps = 2/224 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  N+ R I +TR  +K+AEGS LV+FGDT ++ TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNNRAVNEPRPIKITRHYTKHAEGSVLVEFGDTKVICTATVEDSVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+I R+LR++VDL+ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMLREAAKGKQGGRTMEIQRLIARSLRAMVDLTALGERSITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +    N    +  LKG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALTDAINAL--VENGTLKTSPLKGLVAAVSVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           EDS  + D N VM + G ++EVQG+AE   FS +    +LNLAK
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLNLAK 222


>gi|197117592|ref|YP_002138019.1| ribonuclease PH [Geobacter bemidjiensis Bem]
 gi|197086952|gb|ACH38223.1| ribonuclease PH [Geobacter bemidjiensis Bem]
          Length = 239

 Score =  242 bits (618), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 123/239 (51%), Positives = 167/239 (69%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  N +RE+ +TR   K+AEGS LV+FGDT ++  AT+E +VP +++    GW+T
Sbjct: 2   IRREGRAANALREVKITRNYLKHAEGSVLVEFGDTKVICNATVEARVPSFLKGKGSGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I+IDCDVIQ
Sbjct: 62  AEYCMLPRATHTRNQRESAKGKLSGRTHEIQRLIGRSLRAVVDLELLGERSIVIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL D LQ++    N  +L +  L+  VAA+S G++ G P +DLDY
Sbjct: 122 ADGGTRTASITGAYVALADALQNL---VNAGELEKSPLREAVAAVSVGIVDGVPFLDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDST +VD NFVMT S   VEVQG+AE   F+ D   AM   A   ++ L ++Q++ +
Sbjct: 179 PEDSTAEVDMNFVMTSSMRFVEVQGTAEAEPFTLDQMDAMRRHAMLGLSRLFEIQQEAL 237


>gi|78049070|ref|YP_365245.1| ribonuclease PH [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325927895|ref|ZP_08189119.1| RNAse PH [Xanthomonas perforans 91-118]
 gi|123584287|sp|Q3BPR8|RNPH_XANC5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|78037500|emb|CAJ25245.1| ribonuclease PH [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325541735|gb|EGD13253.1| RNAse PH [Xanthomonas perforans 91-118]
          Length = 241

 Score =  242 bits (618), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R + + R  +++AEGS LV FGDT +L TA++E +VP ++R    GW+TA
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPGFLRGKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +    +  +    L G VAA+S G+  G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALADAVNLLIKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  + +L  LQ+  ++ 
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQRAALAG 241


>gi|237745873|ref|ZP_04576353.1| ribonuclease PH/Ham1 protein [Oxalobacter formigenes HOxBLS]
 gi|229377224|gb|EEO27315.1| ribonuclease PH/Ham1 protein [Oxalobacter formigenes HOxBLS]
          Length = 248

 Score =  242 bits (618), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 122/240 (50%), Positives = 162/240 (67%), Gaps = 6/240 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R +GR  + MR I   R  +KYAEGS L  FGDT ++ TA++EE VP ++R    GW+T
Sbjct: 9   IRSNGRPLDAMRSIEFIRNYTKYAEGSVLTVFGDTQVICTASIEESVPPFLRGRGRGWLT 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R++REA  GRQ GR+QEIQR+IGR++R+  DL+A G R + +DCDVIQ
Sbjct: 69  AEYGMLPRSTHTRMEREAARGRQSGRTQEIQRLIGRSIRAAFDLNAFGERTLRLDCDVIQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ADGGTRTA+I+G  +A +D    M  E    K      L+  VAAIS G++ G P++DLD
Sbjct: 129 ADGGTRTASISGVMIAAYDAFSLMVEEGLIEKVP----LRHFVAAISVGVIQGVPMLDLD 184

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y EDS+ D D N VMT++G  VE+QG+AE   FS      ML +A+  I +LI +QK V+
Sbjct: 185 YQEDSSCDTDMNVVMTEAGDFVEIQGTAEGGAFSHSLLNEMLGMAQQGIGELIHMQKRVL 244


>gi|70733342|ref|YP_263117.1| ribonuclease PH [Pseudomonas fluorescens Pf-5]
 gi|123652029|sp|Q4K3R6|RNPH_PSEF5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|68347641|gb|AAY95247.1| ribonuclease PH [Pseudomonas fluorescens Pf-5]
          Length = 240

 Score =  242 bits (618), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 166/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L+ ++      +    LK  +AA+S GM  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALVDALKVIKK-RGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F      AML LA+  + ++ +LQ+  +++
Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPAELNAMLALAQQGMNEIFQLQQAALAD 240


>gi|158319608|ref|YP_001512115.1| ribonuclease PH [Alkaliphilus oremlandii OhILAs]
 gi|158139807|gb|ABW18119.1| ribonuclease PH [Alkaliphilus oremlandii OhILAs]
          Length = 247

 Score =  242 bits (618), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 120/237 (50%), Positives = 167/237 (70%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ N++R +  TR  ++YA+GS LV+ G+T ++ TAT+E+KVP +++NT  GWITA
Sbjct: 3   RIDGRKNNELRPVKFTRNFTRYAQGSVLVEMGETKVICTATIEDKVPPFLKNTGKGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST +R  RE+  G+  GR+QEIQR+IGRALRSVVDL ALG R + IDCDVIQA
Sbjct: 63  EYSMLPSSTQSRKVRESSRGKVEGRTQEIQRLIGRALRSVVDLDALGERTLWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITG++VAL D L  +++      +   ++  V+AIS G++ G  ++DL Y E
Sbjct: 123 DGGTRTASITGSFVALVDALNKLKEEGAIESIP--VRSFVSAISVGIINGEAMLDLCYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DST  VD N VMTD G  VEVQG+ E + F++     +L L +    +LI+LQK+ +
Sbjct: 181 DSTAKVDMNIVMTDRGEFVEVQGTGEESPFAKADLMNLLELGEKGNLELIQLQKEAL 237


>gi|300741332|ref|ZP_07071353.1| tRNA nucleotidyltransferase [Rothia dentocariosa M567]
 gi|300380517|gb|EFJ77079.1| tRNA nucleotidyltransferase [Rothia dentocariosa M567]
          Length = 245

 Score =  242 bits (617), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 117/237 (49%), Positives = 164/237 (69%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  N++R I++TR  S  AEGS LV+FGDT +L TA+  E VP W++    GW+TA
Sbjct: 6   RADGRTLNELRPITITRGWSNQAEGSALVEFGDTRVLCTASFTEGVPRWLKGEGKGWVTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+TG R  RE+V G+ GGR+ EI R+IGR+LR+++D++ALG   I++DCDV+QA
Sbjct: 66  EYAMLPRATGTRSSRESVKGKIGGRTHEISRLIGRSLRAIIDMNALGENTIVLDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +   +         + LK  V+AIS G++ G P++DL Y E
Sbjct: 126 DGGTRTASITGAYVALADSIAWAQRNGLLSPSDKPLKDSVSAISVGIIDGTPMLDLPYTE 185

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   + D N V+T SG  VEVQG+AE A F +D   A+L+LA +  A+L ++Q++ +
Sbjct: 186 DVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNALLDLALEGTAELARIQRESL 242


>gi|118580726|ref|YP_901976.1| ribonuclease PH [Pelobacter propionicus DSM 2379]
 gi|118503436|gb|ABK99918.1| RNAse PH [Pelobacter propionicus DSM 2379]
          Length = 239

 Score =  242 bits (617), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 121/239 (50%), Positives = 169/239 (70%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R +GR    +R +++TR  +KYAEG+ LV+FGDT ++ TA++EE VP ++R    GW+T
Sbjct: 2   VRKNGRDSRALRPVAITRNFTKYAEGAVLVEFGDTRVICTASVEESVPSFLRGRGTGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+Q GR+ EIQR+IGR+LR+V DL+ALG R + +DCDV+Q
Sbjct: 62  AEYSMLPRATHTRSSREASKGKQSGRTLEIQRLIGRSLRAVTDLAALGERSVYLDCDVLQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL D L  ++    +  L ++ L+  VAA+S G++ G  ++DLDY
Sbjct: 122 ADGGTRTASITGAYVALADALATLK---QRGLLERIPLREAVAAVSVGIVGGESLLDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS+ +VD NFVMT S   VEVQG+AE   F+ +   AM +LA D I  L  LQ++ +
Sbjct: 179 DEDSSAEVDMNFVMTSSQRFVEVQGTAEVEPFTLEQMDAMRSLAMDGIQCLFDLQREAL 237


>gi|260906180|ref|ZP_05914502.1| ribonuclease PH [Brevibacterium linens BL2]
          Length = 240

 Score =  242 bits (617), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 117/239 (48%), Positives = 160/239 (66%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR  +++RE+++TR     AEGS LV+FG+T +L  A+L   VP W++    GW+T
Sbjct: 1   MRADGRNADELREVTITRNWINTAEGSALVEFGNTRVLVAASLTAGVPRWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  RE+V G+ GGR+ EI R+IGR+LR+V+DL  LG   +++DCDV+Q
Sbjct: 61  AEYAMLPRATDSRNTRESVKGKLGGRTHEISRLIGRSLRAVIDLDKLGENTLVLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D +            +  +K  +AAIS G++ G P++DL Y 
Sbjct: 121 ADGGTRTASITGAYVALADAIDKGRSTGIIPAANNPIKDSIAAISVGIIDGEPVLDLPYV 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT SG  VEVQG+AE A F +D    +L+LA    ADL  +Q +V+S
Sbjct: 181 EDSRADTDMNVVMTGSGQFVEVQGTAEGAPFDRDELGTLLDLAAKGCADLTGIQSEVLS 239


>gi|301155568|emb|CBW15036.1| ribonuclease PH (pseudogene) [Haemophilus parainfluenzae T3T1]
          Length = 238

 Score =  242 bits (617), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 118/238 (49%), Positives = 165/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q R I +TR  +K+AEGS LV+FGDT +L TA+++E VP +++    GW+T
Sbjct: 1   MRPNNRENHQPRPIKITRNYTKHAEGSVLVEFGDTKVLCTASVDESVPRFLKGQNQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +   +N    +  +KG +AAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALCDAINGL--IANGTLKTNPIKGLIAAISVGIVEGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VM + G ++EVQG+AE   FS +    +L LAK     +   Q++ +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLGLAKQGCEQIFAAQREAL 236


>gi|148653988|ref|YP_001281081.1| ribonuclease PH [Psychrobacter sp. PRwf-1]
 gi|172048586|sp|A5WHJ0|RNPH_PSYWF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|148573072|gb|ABQ95131.1| RNAse PH [Psychrobacter sp. PRwf-1]
          Length = 238

 Score =  242 bits (617), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 119/238 (50%), Positives = 166/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R+ +Q+R ++  R  +K+AEGS LV FGDT +L TA++E  VP W++    GW+T
Sbjct: 1   MRIDNRELDQLRTVTFERNYTKHAEGSVLVCFGDTKVLCTASVEAGVPRWLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA  G+Q GR+QEIQR+IGR+LR++VDL+ LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMVDLTKLGENTIYLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +AL D L+ ++    K   +  L G VAA+S G+  G  ++DL+Y 
Sbjct: 121 ADGGTRTASITGAAIALIDALEVLQ--QKKKLKADPLIGLVAAVSVGVKNGEVLLDLNYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS+ D D N VMT  G  +E+QG+AE   F++     ML +A+  IADL+KLQ+  +
Sbjct: 179 EDSSCDTDLNVVMTQKGEFIEIQGTAEEKPFTRAEADKMLAMAEKGIADLVKLQQTAL 236


>gi|259906754|ref|YP_002647110.1| ribonuclease PH [Erwinia pyrifoliae Ep1/96]
 gi|224962376|emb|CAX53831.1| Ribonuclease PH (TRNA nucleotidyltransferase) [Erwinia pyrifoliae
           Ep1/96]
 gi|283476540|emb|CAY72368.1| ribonuclease PH [Erwinia pyrifoliae DSM 12163]
 gi|310765964|gb|ADP10914.1| ribonuclease PH [Erwinia sp. Ejp617]
          Length = 238

 Score =  242 bits (617), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 125/240 (52%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GW+T
Sbjct: 1   MRPSGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATIEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ +DL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L H+     K + +  +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNHLVSI-GKLK-ANPMKGMVAAISVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G ++EVQG+AE   FS +    +L LA+  I  L+  QK  ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLKLLELARGGIDTLVAAQKAALTN 238


>gi|253701667|ref|YP_003022856.1| ribonuclease PH [Geobacter sp. M21]
 gi|251776517|gb|ACT19098.1| ribonuclease PH [Geobacter sp. M21]
          Length = 239

 Score =  242 bits (617), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 121/238 (50%), Positives = 166/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  N +RE+ +TR   K+AEGS LV+FGDT ++  AT+E +VP +++    GW+T
Sbjct: 2   IRREGRAANALREVKITRNYLKHAEGSVLVEFGDTKVICNATVEARVPSFLKGKGSGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I+IDCDVIQ
Sbjct: 62  AEYCMLPRATHTRNQRESAKGKLSGRTHEIQRLIGRSLRAVVDLELLGERSIVIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D LQ++    +  +    L+  VAA+S G++ G P +DLDY 
Sbjct: 122 ADGGTRTASITGAYVALADALQNLVKAGDLEK--SPLREAVAAVSVGIVDGVPFLDLDYP 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDST +VD NFVMT S   VEVQG+AE   F+ D   AM + A   ++ L ++Q++ +
Sbjct: 180 EDSTAEVDMNFVMTSSMRFVEVQGTAEAEPFTLDQMDAMRSHAMLGLSRLFEIQQEAL 237


>gi|113971932|ref|YP_735725.1| ribonuclease PH [Shewanella sp. MR-4]
 gi|114045862|ref|YP_736412.1| ribonuclease PH [Shewanella sp. MR-7]
 gi|117922209|ref|YP_871401.1| ribonuclease PH [Shewanella sp. ANA-3]
 gi|123131815|sp|Q0HZV0|RNPH_SHESR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123324577|sp|Q0HE49|RNPH_SHESM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228320|sp|A0L1S6|RNPH_SHESA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|113886616|gb|ABI40668.1| RNAse PH [Shewanella sp. MR-4]
 gi|113887304|gb|ABI41355.1| RNAse PH [Shewanella sp. MR-7]
 gi|117614541|gb|ABK49995.1| RNAse PH [Shewanella sp. ANA-3]
          Length = 237

 Score =  242 bits (617), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q R I++TR+ + +AEGS LV+FG+T +L TA+  E VP +++    GW+T
Sbjct: 1   MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+Q GR+QEIQR+IGRALR+ VD+ ALG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L            S  LK  +AA+S G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALNWAR--GKGIIKSNPLKFLIAAVSVGIYNGEAISDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G I+E+QG+AE   FS +    +L LAK+ I +++ +QK  ++
Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELIELLGLAKNSIREIVDVQKAALN 237


>gi|310817156|ref|YP_003965120.1| ribonuclease PH [Ketogulonicigenium vulgare Y25]
 gi|308755891|gb|ADO43820.1| ribonuclease PH [Ketogulonicigenium vulgare Y25]
          Length = 235

 Score =  242 bits (617), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 123/223 (55%), Positives = 163/223 (73%), Gaps = 4/223 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ ++MR++++   VS++AEGSCL+K GDTH+L TA+L+ +VP +++N+  GW+T
Sbjct: 1   MRPSGRKPDEMRKVTIETGVSRHAEGSCLIKMGDTHVLCTASLDARVPPFLKNSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R+KREA  G Q GR+QEIQR++GRALR+ VD  ALG RQI IDCDVIQ
Sbjct: 61  AEYGMLPRATHSRMKREAKDG-QSGRTQEIQRLVGRALRAGVDRVALGERQITIDCDVIQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR AAITG WVAL   +  +        +S  L   V+AISCG+  G  ++DLDY 
Sbjct: 120 ADGGTRCAAITGGWVALRLAVNKL--LKAGVIISDPLSAPVSAISCGIYAGQALLDLDYP 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           EDS   VD NF+MT +  +VE+Q SAE ATFS+     +L+LA
Sbjct: 178 EDSEAGVDGNFIMT-ADRLVEIQMSAEGATFSRAQMDTLLDLA 219


>gi|83945049|ref|ZP_00957415.1| ribonuclease PH [Oceanicaulis alexandrii HTCC2633]
 gi|83851831|gb|EAP89686.1| ribonuclease PH [Oceanicaulis alexandrii HTCC2633]
          Length = 238

 Score =  242 bits (617), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 114/234 (48%), Positives = 162/234 (69%), Gaps = 2/234 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GRQ + +R +S     S YAEGSCL+ FG+T +L TA++E+ VP W+R    GW+T
Sbjct: 1   MRPEGRQPDALRPLSFEMGWSPYAEGSCLISFGNTKVLCTASVEDNVPPWLRGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            EY MLPR+T  R +RE  SG+  GR+QEIQR+IGR+LR+ VDL ALG RQI++DCDV+Q
Sbjct: 61  GEYSMLPRATHQRTRREVQSGKPSGRTQEIQRLIGRSLRAAVDLKALGERQIVVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAW+AL   + ++ +  +  +   V+   +AA+S G++ G  ++DL+Y 
Sbjct: 121 ADGGTRTAAITGAWLALKAAVAYLME-EDVLKADPVI-AQIAAVSAGVVNGDCVLDLEYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           ED   + DANFV+T +G ++EVQ +AE A  +Q+ F  +  LA+  ++DL   Q
Sbjct: 179 EDRVAETDANFVLTSTGGVIEVQATAEDAPMTQEQFDQIFALARKGVSDLCAAQ 232


>gi|56461525|ref|YP_156806.1| RNase PH [Idiomarina loihiensis L2TR]
 gi|61215805|sp|Q5QYL5|RNPH_IDILO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|56180535|gb|AAV83257.1| RNase PH [Idiomarina loihiensis L2TR]
          Length = 237

 Score =  242 bits (617), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 121/239 (50%), Positives = 164/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q+R +++TR  +K+AEGS L++FG+T +L  A++E  VP +++    GW+T
Sbjct: 1   MRPSGRTAQQIRPVTITRNFTKHAEGSVLIEFGETKVLCNASVERGVPRFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+QGGR+ EIQR+IGR+LR+ +D+SALG   I IDCDVIQ
Sbjct: 61  AEYSMLPRATHTRSAREASRGKQGGRTLEIQRLIGRSLRTCIDMSALGEHTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  M   +        LK  VAAIS G+L G P+ DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALNWMR--AQGMVKVNPLKEMVAAISVGILDGEPVSDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT++G  +E+QG+AE   FS D   +++ +A+  I +LI +QK  ++
Sbjct: 179 EDSKADTDMNIVMTEAGKFIEIQGTAEGEAFSFDEMNSLVEMARHSIRELIDIQKQALA 237


>gi|153006268|ref|YP_001380593.1| ribonuclease PH [Anaeromyxobacter sp. Fw109-5]
 gi|166228263|sp|A7HFW3|RNPH_ANADF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|152029841|gb|ABS27609.1| ribonuclease PH [Anaeromyxobacter sp. Fw109-5]
          Length = 238

 Score =  241 bits (616), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 126/238 (52%), Positives = 162/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR    +R + L   VSK+AEGSCL +FGDTH+L TA+++EKVP  +  T  GW+T
Sbjct: 1   MRTNGRGPRDLRNVVLEPGVSKHAEGSCLARFGDTHVLCTASVDEKVPPHVYGTGAGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+QGGR+ EIQR+IGRALR+ VDL ALG+R + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHERMAREAARGKQGGRTLEIQRLIGRALRAAVDLRALGTRTVTLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG +VAL   L+ ++    K      L   VAA+S G++ G   VDLDYG
Sbjct: 121 ADGGTRTAAITGGYVALALALRGLQ--QRKTLSRNPLARSVAAVSVGLVEGEVCVDLDYG 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDST +VD N V T  G +VEVQG+AE   F +     M++ A + I  L + Q+  +
Sbjct: 179 EDSTAEVDMNVVATGDGALVEVQGTAEGKPFPRSDLDRMVDAALEAIGRLKERQEQAL 236


>gi|91791686|ref|YP_561337.1| ribonuclease PH [Shewanella denitrificans OS217]
 gi|123357198|sp|Q12SG2|RNPH_SHEDO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|91713688|gb|ABE53614.1| RNAse PH [Shewanella denitrificans OS217]
          Length = 237

 Score =  241 bits (616), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q R I++TR  + +AEGS LV+FG+T +L TA+  E VP +++    GW+T
Sbjct: 1   MRPSKRTPAQTRPITITRNFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+Q GR+QEIQR+IGR+LR+ VD+ ALG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VA+ D L      +     S  LK  +AA+S G+  G  I DL+Y 
Sbjct: 121 ADGGTRTAAITGACVAMVDALNWAR--AKNIIKSNPLKFLIAAVSVGIYKGEAISDLEYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G I+EVQG+AE   FS +    +L LAK+ I +++ +QK  ++
Sbjct: 179 EDSAAETDMNVVMTETGKIIEVQGTAEGEPFSHEELNELLGLAKNSIREIVDVQKSALN 237


>gi|288933001|ref|YP_003437060.1| ribonuclease PH [Klebsiella variicola At-22]
 gi|288887730|gb|ADC56048.1| ribonuclease PH [Klebsiella variicola At-22]
          Length = 238

 Score =  241 bits (616), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 126/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA+++E VP +++    GWIT
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   + K + +  +KG VAA+S G++ G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKLA-AAGKLK-TNPMKGMVAAVSVGIVNGEAICDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  +I  QK  + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIITTQKAALEN 238


>gi|312963858|ref|ZP_07778329.1| ribonuclease PH [Pseudomonas fluorescens WH6]
 gi|311281893|gb|EFQ60503.1| ribonuclease PH [Pseudomonas fluorescens WH6]
          Length = 240

 Score =  241 bits (616), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 164/239 (68%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L+ ++      +    LK  +AA+S GM  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALVDALKVIKK-RGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F      AML LA+  + ++  LQ   +++
Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPAELNAMLALAQKGMTEIFALQNAALAD 240


>gi|95113322|emb|CAK18050.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Pseudomonas entomophila L48]
          Length = 253

 Score =  241 bits (616), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 16  RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 75

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 76  EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 135

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++      +    LK  +AA+S GM  G  ++DLDY E
Sbjct: 136 DGGTRTASITGAMVALCDALAVIKK-RGGLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLE 194

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  + F AML LA+  + ++ +LQ+  +++
Sbjct: 195 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMGEIFELQQAALAD 253


>gi|332532804|ref|ZP_08408678.1| ribonuclease PH [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037831|gb|EGI74281.1| ribonuclease PH [Pseudoalteromonas haloplanktis ANT/505]
          Length = 237

 Score =  241 bits (616), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 124/239 (51%), Positives = 161/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  NQ+R ++ TR  + +AEGS LV+FG+T +L TAT+E  VP +++    GWI 
Sbjct: 1   MRPSERTPNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWIN 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I IDCDVIQ
Sbjct: 61  AEYGMLPRATHTRNAREAARGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L HM   +     S  LK  +AAIS G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASISGACVALVDALTHMR--AKGMINSNPLKHMIAAISVGIYKGQAISDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N ++T++G I+E+QG+AE   FS D    +L LAK  I ++I +QK  ++
Sbjct: 179 EDSAAETDMNVILTETGKIIEIQGTAEGEPFSFDELDELLTLAKHSIREIIDVQKQALA 237


>gi|302336447|ref|YP_003801654.1| RNAse PH [Olsenella uli DSM 7084]
 gi|301320287|gb|ADK68774.1| RNAse PH [Olsenella uli DSM 7084]
          Length = 267

 Score =  241 bits (616), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 128/236 (54%), Positives = 160/236 (67%), Gaps = 4/236 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +QMR   LTR + K A+GSCL +FGDT ++ TAT+EE VP W + ++ GW++A
Sbjct: 31  RSYGRAADQMRPAKLTRDIMKNADGSCLAEFGDTRVICTATVEEGVPAWRKGSRAGWVSA 90

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R +RE   GR+G RS EI+R+IGR+LR+VVDL  LG   +I DCDVIQA
Sbjct: 91  EYAMLPASTSTRSRRE-YKGRKG-RSMEIERLIGRSLRAVVDLHRLGELTVICDCDVIQA 148

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGAWVALHD L    D     +L   L G VAAIS GM+ G  ++DLDY E
Sbjct: 149 DGGTRTASITGAWVALHDALMASVDAGRLARLP--LTGQVAAISMGMVDGSLLLDLDYPE 206

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           DS   VD N V TD+G IVEVQG+ ER+T  +    A+L+L +  I  L+ LQ  V
Sbjct: 207 DSHAQVDMNLVGTDAGGIVEVQGTGERSTIDRAQLNALLDLGQVGIGRLVALQNQV 262


>gi|145628603|ref|ZP_01784403.1| ribonuclease PH [Haemophilus influenzae 22.1-21]
 gi|144979073|gb|EDJ88759.1| ribonuclease PH [Haemophilus influenzae 22.1-21]
          Length = 238

 Score =  241 bits (616), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 119/238 (50%), Positives = 165/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ R+I +TR  +K+AEGS LV+FGDT +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +    N    +  +KG V+AIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALCDAINGL--IENGTLKTNPIKGLVSAISVGIVEGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VM + G ++EVQG+A    FS +    +L+LAK     +   Q++ +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAGSEPFSHEELLTLLDLAKQGCNQIFIAQREAL 236


>gi|162139697|ref|YP_610833.2| ribonuclease PH [Pseudomonas entomophila L48]
          Length = 240

 Score =  241 bits (616), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++      +    LK  +AA+S GM  G  ++DLDY E
Sbjct: 123 DGGTRTASITGAMVALCDALAVIKK-RGGLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  + F AML LA+  + ++ +LQ+  +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMGEIFELQQAALAD 240


>gi|148359584|ref|YP_001250791.1| ribonuclease PH [Legionella pneumophila str. Corby]
 gi|296107626|ref|YP_003619327.1| ribonuclease PH [Legionella pneumophila 2300/99 Alcoy]
 gi|166228288|sp|A5IDJ5|RNPH_LEGPC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|148281357|gb|ABQ55445.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Legionella pneumophila str. Corby]
 gi|295649528|gb|ADG25375.1| ribonuclease PH [Legionella pneumophila 2300/99 Alcoy]
          Length = 235

 Score =  241 bits (616), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 117/236 (49%), Positives = 165/236 (69%), Gaps = 2/236 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R+ +Q+R +++TR  + YAEGS LV+FG T ++  A++ E VP +++    GWIT
Sbjct: 1   MRPSNREHDQLRPVTITRNFTNYAEGSVLVEFGQTKVICNASIVEGVPRFLKGKNQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+QGGR+ EIQR+IGR+LR+ +DL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTEREASKGKQGGRTLEIQRLIGRSLRACIDLKVLGENTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG+ VA+ D +  M     K +   V   +VAA+S G+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGSCVAMRDAIHWMVQ-REKIKKMPVFN-YVAAVSVGIYRGQPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           ED   + D N VM + GH +EVQG+AE  +F+++   +ML+LA+  I  LI++QK+
Sbjct: 179 EDVLAETDMNVVMNEQGHFIEVQGTAEDNSFNREQLNSMLSLAEIGIPQLIEIQKN 234


>gi|147677126|ref|YP_001211341.1| ribonuclease PH [Pelotomaculum thermopropionicum SI]
 gi|146273223|dbj|BAF58972.1| RNase PH [Pelotomaculum thermopropionicum SI]
          Length = 257

 Score =  241 bits (616), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 125/236 (52%), Positives = 169/236 (71%), Gaps = 4/236 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R + +TR   K+AEGS L++ GDT ++ TAT+E+KVP++++    GWITA
Sbjct: 3   RIDGRKPDQLRPVRITRNYIKHAEGSVLIEIGDTRVICTATVEDKVPLFLKGEGKGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R  REA  G+ GGR+ EIQR+IGR+LRSVVDL+ALG R + +DCDVIQA
Sbjct: 63  EYGMLPRSTGVRTPREAARGKIGGRTCEIQRLIGRSLRSVVDLAALGERTVWLDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTA+ITGA+VAL D L  +++   + Q+ ++ +   VAA S G L G   +DL Y 
Sbjct: 123 DGGTRTASITGAFVALVDALNRLKE---QGQIDRIPVSDFVAATSVGRLNGRIYLDLCYE 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           EDS  +VD N VMT SG  VEVQG+ E A+F++    +M+ LA   I+ LI  QK+
Sbjct: 180 EDSAAEVDMNIVMTGSGRFVEVQGTGEEASFTRQEMDSMIELAAQGISRLILHQKE 235


>gi|326387915|ref|ZP_08209521.1| ribonuclease PH [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207961|gb|EGD58772.1| ribonuclease PH [Novosphingobium nitrogenifigens DSM 19370]
          Length = 238

 Score =  241 bits (616), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 116/214 (54%), Positives = 155/214 (72%), Gaps = 2/214 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  ++MR I++    +K+AEGS L+ FGDT ++ TA++EE+VP ++R    GW+T
Sbjct: 1   MRASGRAADEMRAITIETHFTKHAEGSVLIGFGDTKVIVTASVEERVPPFLRGKGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V DL  LG RQI +DCDVIQ
Sbjct: 61  AEYSMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVTDLKKLGERQITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GAW+AL   +  +   S + +    L   VAAISCG++ G P++DLDY 
Sbjct: 121 ADGGTRTASISGAWIALRLAVDKLM-ASGQIK-EDPLPRKVAAISCGIVDGTPVLDLDYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
           EDST D DANFV+ + G I EVQ +AE AT+ ++
Sbjct: 179 EDSTADADANFVLIEGGQIAEVQATAEGATYDEE 212


>gi|258616327|ref|ZP_05714097.1| ribonuclease PH/Ham1 protein [Enterococcus faecium DO]
          Length = 253

 Score =  241 bits (616), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 122/242 (50%), Positives = 163/242 (67%), Gaps = 3/242 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+  ++R++ L   V KY EGS +++FGDT ++ +AT+E+ VP ++R T  GW+T
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R II+DCDVIQ
Sbjct: 61  AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   ++ +     K      +K H+AA+S G+L  G  + DLDY
Sbjct: 121 ADGGTRTASITGAFVALKLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N VMT+SG  VE+QG+ E ATF  +    ML   K+ I DLIK QK  + 
Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238

Query: 240 NE 241
            E
Sbjct: 239 TE 240


>gi|77361698|ref|YP_341273.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas
           haloplanktis TAC125]
 gi|123588968|sp|Q3IJI0|RNPH_PSEHT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|76876609|emb|CAI87831.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 237

 Score =  241 bits (616), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 124/239 (51%), Positives = 161/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  NQ+R ++ TR  + +AEGS LV+FG+T +L TAT+E  VP +++    GWI 
Sbjct: 1   MRPSERTANQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWIN 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I IDCDVIQ
Sbjct: 61  AEYGMLPRATHTRNAREAARGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L HM   +     S  LK  +AAIS G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASISGACVALVDALTHMR--AKGMINSNPLKYMIAAISVGIYKGQAISDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N ++T++G I+E+QG+AE   FS D    +L LAK  I ++I +QK  ++
Sbjct: 179 EDSAAETDMNVILTETGKIIEIQGTAEGEPFSFDELDELLTLAKHSIREIIDVQKQALA 237


>gi|311113412|ref|YP_003984634.1| tRNA nucleotidyltransferase [Rothia dentocariosa ATCC 17931]
 gi|310944906|gb|ADP41200.1| tRNA nucleotidyltransferase [Rothia dentocariosa ATCC 17931]
          Length = 245

 Score =  241 bits (616), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 117/237 (49%), Positives = 165/237 (69%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  N++R I++TR  S  AEGS LV+FGDT +L TA+  E VP W++    GW+TA
Sbjct: 6   RADGRALNELRPITITRGWSNQAEGSALVEFGDTRVLCTASFTEGVPRWLKGEGKGWVTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+TG R  RE+V G+ GGR+ EI R+IGR+LR+V+D++ALG   I++DCDV+QA
Sbjct: 66  EYAMLPRATGTRSSRESVKGKIGGRTHEISRLIGRSLRAVIDMNALGENTIVLDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +   +        ++ LK  V+AIS G++ G P++DL Y E
Sbjct: 126 DGGTRTASITGAYVALADSIAWAQRNGLLSPSAKPLKDSVSAISVGIIDGTPMLDLPYTE 185

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   + D N V+T SG  VEVQG+AE A F ++   A+L+LA +  A+L ++Q++ +
Sbjct: 186 DVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRNELNALLDLALEGTAELARIQRESL 242


>gi|320655608|gb|EFX23536.1| ribonuclease PH [Escherichia coli O55:H7 str. 3256-97 TW 07815]
          Length = 236

 Score =  241 bits (616), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 126/240 (52%), Positives = 166/240 (69%), Gaps = 4/240 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKG--QGWIT 58

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 59  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 118

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D LQ +    N    +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 119 ADGGTRTASITGACVALADALQKL--VENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 176

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 177 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 236


>gi|315292912|gb|EFU52264.1| ribonuclease PH [Escherichia coli MS 153-1]
          Length = 214

 Score =  241 bits (616), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 119/216 (55%), Positives = 153/216 (70%), Gaps = 2/216 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D LQ +    N    +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALQKL--VENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
           EDS  + D N VMT+ G I+EVQG+AE   F+ +  
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEEL 214


>gi|85711491|ref|ZP_01042549.1| RNase PH [Idiomarina baltica OS145]
 gi|85694643|gb|EAQ32583.1| RNase PH [Idiomarina baltica OS145]
          Length = 237

 Score =  241 bits (616), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q+R +++TR  +K+AEGS L++FGDT +L  AT+E  VP +++    GW+T
Sbjct: 1   MRPSGRTAQQIRPVTITRNFTKHAEGSVLIEFGDTKVLCNATVEAGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST  R +REA  G+QGGR+ EIQR+I R+LR+ +DL ALG   I +DCDV+Q
Sbjct: 61  AEYSMLPRSTHTRSQREAARGKQGGRTMEIQRLIARSLRACIDLKALGENTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L +M   ++K      LK  VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALNYMR--ASKMVKVNPLKEMVAAISVGIVDGDAVSDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G  +E+QG+AE   FS D   +++++A+  I +LI +QK  ++
Sbjct: 179 EDSQAETDMNVVMTEAGKFIEIQGTAEGEAFSYDEMQSLVDIARVSIKELIDIQKAALA 237


>gi|293554040|ref|ZP_06674640.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1039]
 gi|291601822|gb|EFF32074.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1039]
          Length = 451

 Score =  241 bits (616), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 122/242 (50%), Positives = 163/242 (67%), Gaps = 3/242 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+  ++R++ L   V KY EGS +++FGDT ++ +AT+E+ VP ++R T  GW+T
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R II+DCDVIQ
Sbjct: 61  AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   ++ +     K      +K H+AA+S G+L  G  + DLDY
Sbjct: 121 ADGGTRTASITGAFVALKLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N VMT+SG  VE+QG+ E ATF  +    ML   K+ I DLIK QK  + 
Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238

Query: 240 NE 241
            E
Sbjct: 239 TE 240


>gi|69246345|ref|ZP_00603901.1| Ribonuclease PH:Ham1-like protein [Enterococcus faecium DO]
 gi|68195298|gb|EAN09749.1| Ribonuclease PH:Ham1-like protein [Enterococcus faecium DO]
          Length = 451

 Score =  241 bits (615), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 122/242 (50%), Positives = 163/242 (67%), Gaps = 3/242 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+  ++R++ L   V KY EGS +++FGDT ++ +AT+E+ VP ++R T  GW+T
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R II+DCDVIQ
Sbjct: 61  AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   ++ +     K      +K H+AA+S G+L  G  + DLDY
Sbjct: 121 ADGGTRTASITGAFVALKLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N VMT+SG  VE+QG+ E ATF  +    ML   K+ I DLIK QK  + 
Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238

Query: 240 NE 241
            E
Sbjct: 239 TE 240


>gi|260582842|ref|ZP_05850627.1| ribonuclease PH [Haemophilus influenzae NT127]
 gi|260094055|gb|EEW77958.1| ribonuclease PH [Haemophilus influenzae NT127]
          Length = 238

 Score =  241 bits (615), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 119/238 (50%), Positives = 165/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ R+I +TR  +K+AEGS LV+FGDT +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+Q GR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +    N    +  +KG V+AIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALCDAINSL--IENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK     +   Q++ +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLILLDLAKQGCNQIFIAQREAL 236


>gi|313501268|gb|ADR62634.1| Rph [Pseudomonas putida BIRD-1]
          Length = 240

 Score =  241 bits (615), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 121/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRVADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++      +    LK  +AA+S GM  G  ++DLDY E
Sbjct: 123 DGGTRTASITGAMVALCDALAVIKK-RGGLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  + F AML LA+  I ++ +LQ+  +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGINEIFELQQAALAD 240


>gi|319775856|ref|YP_004138344.1| ribonuclease PH [Haemophilus influenzae F3047]
 gi|329123701|ref|ZP_08252261.1| tRNA nucleotidyltransferase [Haemophilus aegyptius ATCC 11116]
 gi|317450447|emb|CBY86663.1| ribonuclease PH [Haemophilus influenzae F3047]
 gi|327469900|gb|EGF15365.1| tRNA nucleotidyltransferase [Haemophilus aegyptius ATCC 11116]
          Length = 238

 Score =  241 bits (615), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 119/238 (50%), Positives = 165/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ R+I +TR  +K+AEGS LV+FGDT +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+Q GR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +    N    +  +KG V+AIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALCDAINGL--IENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK     +   Q++ +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREAL 236


>gi|170719366|ref|YP_001747054.1| ribonuclease PH [Pseudomonas putida W619]
 gi|226736926|sp|B1J4L4|RNPH_PSEPW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|169757369|gb|ACA70685.1| ribonuclease PH [Pseudomonas putida W619]
          Length = 240

 Score =  241 bits (615), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++      +    LK  +AA+S GM  G  ++DLDY E
Sbjct: 123 DGGTRTASITGAMVALVDALAVIKK-RGGLKAGNPLKHMIAAVSVGMYQGEAVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  + F AML LA+  + ++ +LQ+  +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMNEIFELQQVALAD 240


>gi|293390938|ref|ZP_06635272.1| ribonuclease PH [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951472|gb|EFE01591.1| ribonuclease PH [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 238

 Score =  241 bits (615), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q R I +TR  +K+AEGS LV+FGDT +L TA++EE VP +++    GW+T
Sbjct: 1   MRPNQRANHQPRPIQITRHYTKHAEGSVLVEFGDTKVLCTASVEESVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   +N       LKG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALCDALNSL--VTNGTLAKNPLKGLVAAISVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK     + + Q+  ++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCDMIFQTQRATLA 237


>gi|227551340|ref|ZP_03981389.1| tRNA nucleotidyltransferase [Enterococcus faecium TX1330]
 gi|257887545|ref|ZP_05667198.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,141,733]
 gi|257896040|ref|ZP_05675693.1| ribonuclease PH/Ham1 [Enterococcus faecium Com12]
 gi|257898668|ref|ZP_05678321.1| ribonuclease PH/Ham1 [Enterococcus faecium Com15]
 gi|293378788|ref|ZP_06624945.1| tRNA nucleotidyltransferase [Enterococcus faecium PC4.1]
 gi|227179551|gb|EEI60523.1| tRNA nucleotidyltransferase [Enterococcus faecium TX1330]
 gi|257823599|gb|EEV50531.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,141,733]
 gi|257832605|gb|EEV59026.1| ribonuclease PH/Ham1 [Enterococcus faecium Com12]
 gi|257836580|gb|EEV61654.1| ribonuclease PH/Ham1 [Enterococcus faecium Com15]
 gi|292642581|gb|EFF60734.1| tRNA nucleotidyltransferase [Enterococcus faecium PC4.1]
          Length = 451

 Score =  241 bits (615), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 122/242 (50%), Positives = 163/242 (67%), Gaps = 3/242 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+  ++R++ L   V KY EGS +++FGDT ++ +AT+E+ VP ++R T  GW+T
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATVEDSVPPFLRETGTGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+IGR+LR+V+DL  LG R IIIDCDVIQ
Sbjct: 61  AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVIDLEKLGERSIIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   ++ +     K      +K H+AA+S G+L  G  + DLDY
Sbjct: 121 ADGGTRTASITGAFVALRLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N VMT+SG  VE+QG+ E ATF  +    ML   K+ I DLIK QK  + 
Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238

Query: 240 NE 241
            E
Sbjct: 239 TE 240


>gi|325272059|ref|ZP_08138496.1| ribonuclease PH [Pseudomonas sp. TJI-51]
 gi|324102805|gb|EGC00215.1| ribonuclease PH [Pseudomonas sp. TJI-51]
          Length = 240

 Score =  241 bits (615), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++      +    LK  +AA+S GM  G  ++DLDY E
Sbjct: 123 DGGTRTASITGAMVALCDALAVIKK-RGGLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  + F AML LA+  + ++ +LQ+  +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMTEIFELQQAALAD 240


>gi|261867317|ref|YP_003255239.1| ribonuclease PH [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412649|gb|ACX82020.1| ribonuclease PH [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 238

 Score =  241 bits (615), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q R I +TR  +K+AEGS LV+FGDT +L TA++EE VP +++    GW+T
Sbjct: 1   MRPNQRANHQPRPIQITRHYTKHAEGSVLVEFGDTKVLCTASVEESVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   +N       LKG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALCDALNSL--VTNGTLAKNPLKGLVAAISVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK     + + Q+  ++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGKPFSHEELLTLLDLAKQGCDMIFQTQRATLA 237


>gi|167626670|ref|YP_001677170.1| ribonuclease PH [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|189043763|sp|B0U040|RNPH_FRAP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|167596671|gb|ABZ86669.1| tRNA nucleotidyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 235

 Score =  241 bits (615), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 115/232 (49%), Positives = 161/232 (69%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R + +T   +K+AEGS L++FGDT +L TA++   VP + +++  GW+T
Sbjct: 1   MRPSGRNNDQLRTLKVTHNFTKHAEGSVLIEFGDTKVLCTASVVAGVPRFKKDSGEGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGRALR+ VDL+ +G   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTKIGENTIKVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +A+ D + +M+      + +  L   VAAIS G+    P++DLDY 
Sbjct: 121 ADGGTRTASITGASLAIRDAIDYMKQNGMLDEQTSPLMSQVAAISVGIFNNEPVLDLDYD 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           EDS  + D N VM  +G ++E+QG+AE   FS++ F  ML LAK  I ++ +
Sbjct: 181 EDSNAETDMNVVMNSNGGMIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFE 232


>gi|15838106|ref|NP_298794.1| ribonuclease PH [Xylella fastidiosa 9a5c]
 gi|21759420|sp|Q9PD74|RNPH_XYLFA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|9106537|gb|AAF84314.1|AE003980_6 ribonuclease PH [Xylella fastidiosa 9a5c]
          Length = 241

 Score =  241 bits (615), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 168/239 (70%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGRQ + +R + + R  + +AEGS LV FG+T ++ TA++E KVP+++RN   GW+TA
Sbjct: 5   RPSGRQADALRPVRIERAFTCHAEGSVLVSFGNTLVVCTASVEAKVPVFLRNKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R +REA  G+Q GR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRSTHTRSEREAARGKQAGRTLEIQRLIGRALRTCVDRTALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTAAITGA+VAL D ++ +E    + QL +  L G VAA+S G+  G P++DLDY 
Sbjct: 125 DGGTRTAAITGAYVALVDAVRCLE---QRGQLKKSPLIGAVAAVSVGIYRGMPVLDLDYP 181

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VM D G ++E+QG+AE+  F +     +L LA+   A L  +Q++ ++
Sbjct: 182 EDSDCDTDMNVVMNDEGGVIELQGTAEQQAFRRGELDMLLALAERGTAMLFDIQREALA 240


>gi|145631050|ref|ZP_01786825.1| ribonuclease PH [Haemophilus influenzae R3021]
 gi|144983335|gb|EDJ90817.1| ribonuclease PH [Haemophilus influenzae R3021]
          Length = 238

 Score =  241 bits (615), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 160/224 (71%), Gaps = 2/224 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ R+I +TR  +K+AEGS LV+FGDT +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+Q GR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +    N    +  +KG V+AIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALCDAINGL--IENGTLKTNPIKGLVSAISVGIVEGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAK 222


>gi|221135142|ref|ZP_03561445.1| RNase PH (tRNA nucleotidyltransferase) [Glaciecola sp. HTCC2999]
          Length = 238

 Score =  241 bits (615), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 123/240 (51%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  NQ+R +++TR  + +AEGS LV+FG+T ++  AT+EE VP +++    GWIT
Sbjct: 1   MRPSGRTANQIRPVTITRHFTCHAEGSVLVEFGNTKVICNATVEEGVPRFMKGKGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYSMLPRATHSRSGREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L HM   S     +  LK  +AA+S G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALTHMR--SKGILKANPLKHMIAALSVGVYKGNAIADLEYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT++G ++EVQG+AE   FS +    ML+LAK  + +L  +QK  ++N
Sbjct: 179 EDSDAETDMNVVMTETGKLIEVQGTAEGEPFSFEEMSEMLDLAKHGLRELFDIQKTALNN 238


>gi|310657898|ref|YP_003935619.1| nucleoside-triphosphatase [Clostridium sticklandii DSM 519]
 gi|308824676|emb|CBH20714.1| Nucleoside-triphosphatase [Clostridium sticklandii]
          Length = 443

 Score =  241 bits (615), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 117/239 (48%), Positives = 167/239 (69%), Gaps = 6/239 (2%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           ++ N +REI +T+  +KYAEGS L++FGDT +L  A++EEKVP +++NT  GWI+AEY M
Sbjct: 3   KESNMLREIKITKNFTKYAEGSVLIEFGDTVVLCNASIEEKVPPFLKNTGTGWISAEYSM 62

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LPRST  R  R++  G+  GR+ EIQR+IGRALRSVVD+  LG R I IDCDV+QADGGT
Sbjct: 63  LPRSTHQRKIRDSARGKIDGRTHEIQRLIGRALRSVVDMKVLGERTIWIDCDVLQADGGT 122

Query: 126 RTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
           RTA+ITGA+VAL D +  +  ++    F ++      V+A+S G++ G P++DL Y EDS
Sbjct: 123 RTASITGAFVALCDAMAKLYEKEAIKSFPIN----AFVSAVSVGIVKGKPVLDLCYEEDS 178

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           + +VD N VMTD G  +EVQG+ E+  FS++    +L+LA+     L+K+Q+  I   +
Sbjct: 179 SAEVDMNVVMTDKGEFIEVQGTGEQHPFSKNQLMQLLDLAQQGNEQLMKIQRRAIGEPI 237


>gi|282849100|ref|ZP_06258485.1| tRNA nucleotidyltransferase [Veillonella parvula ATCC 17745]
 gi|282580804|gb|EFB86202.1| tRNA nucleotidyltransferase [Veillonella parvula ATCC 17745]
          Length = 251

 Score =  241 bits (615), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 123/238 (51%), Positives = 162/238 (68%), Gaps = 4/238 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R   Q+R I +TR  ++YAEGS L++ G T ++ TAT+E+ VP W++ +  GW+T
Sbjct: 1   MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATVEDSVPRWLKGSGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY +LPRST  RV REA  G+Q GR+ EIQR+IGRALR+VVDL ALG R I IDCDVIQ
Sbjct: 61  AEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D +      + KF ++       AAIS G+    PI DL Y 
Sbjct: 121 ADGGTRTASITGAFVALVDAVDFTFGGAGKFPITN----FCAAISVGIGPDGPITDLCYE 176

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS   VD N V T SG++VEVQG+ E  TF++D   A+L+LA+    +L+  Q++V+
Sbjct: 177 EDSAAIVDMNVVRTGSGNMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQREVL 234


>gi|166713272|ref|ZP_02244479.1| ribonuclease PH [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 241

 Score =  241 bits (615), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 121/239 (50%), Positives = 164/239 (68%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R + + R  +++AEGS LV FGDT +L TA++E +VP ++R    GW+TA
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPNFLRGKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRT AITGA+VAL D +  +     + ++ +  L G VAA+S G+  G P++DLDY 
Sbjct: 125 DGGTRTTAITGAYVALADAVNLL---LKRGEIKKHPLIGAVAAVSVGIYRGEPVLDLDYP 181

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  + +L  LQ+  ++
Sbjct: 182 EDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQRAALA 240


>gi|52842229|ref|YP_096028.1| ribonuclease PH [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|54294910|ref|YP_127325.1| ribonuclease PH [Legionella pneumophila str. Lens]
 gi|54297939|ref|YP_124308.1| ribonuclease PH [Legionella pneumophila str. Paris]
 gi|21759423|sp|Q9X528|RNPH_LEGPN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61215813|sp|Q5WV28|RNPH_LEGPL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61215816|sp|Q5X3P0|RNPH_LEGPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61215829|sp|Q5ZTZ6|RNPH_LEGPH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|4704704|gb|AAD28218.1|AF120720_1 ribonuclease PH [Legionella pneumophila 130b]
 gi|52629340|gb|AAU28081.1| ribonuclease PH [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|53751724|emb|CAH13146.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Legionella pneumophila str. Paris]
 gi|53754742|emb|CAH16229.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Legionella pneumophila str. Lens]
 gi|307610737|emb|CBX00344.1| ribonuclease PH [Legionella pneumophila 130b]
          Length = 235

 Score =  241 bits (615), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 117/240 (48%), Positives = 166/240 (69%), Gaps = 10/240 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R+ +Q+R +++TR  + YAEGS LV+FG T ++  A++ E VP +++    GWIT
Sbjct: 1   MRPSNREHDQLRPVTITRNFTNYAEGSVLVEFGQTKVICNASIVEGVPRFLKGKNQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+QGGR+ EIQR+IGR+LR+ +DL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTEREASKGKQGGRTLEIQRLIGRSLRACIDLKVLGENTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK----GHVAAISCGMLCGYPIVD 176
           ADGGTRTAAITG+ VA+ D +  M       Q  ++ K     +VAA+S G+  G P++D
Sbjct: 121 ADGGTRTAAITGSCVAMRDAIHWM------VQREKIKKMPAFNYVAAVSVGIYRGQPVLD 174

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           LDY ED   + D N VM + GH +EVQG+AE  +F+++   +ML+LA+  I  LI++QK+
Sbjct: 175 LDYAEDVLAETDMNVVMNEQGHFIEVQGTAEDNSFNREQLNSMLSLAEIGIPQLIEIQKN 234


>gi|77919626|ref|YP_357441.1| ribonuclease PH [Pelobacter carbinolicus DSM 2380]
 gi|77545709|gb|ABA89271.1| RNAse PH [Pelobacter carbinolicus DSM 2380]
          Length = 244

 Score =  241 bits (614), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 124/234 (52%), Positives = 161/234 (68%), Gaps = 4/234 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R I  +R  ++YAEGS LV FG+T +L  AT+EE VP ++R    GWITA
Sbjct: 8   RADGRTPSELRPIYFSRGFTRYAEGSVLVSFGETRVLCNATVEEGVPSFLRGQGQGWITA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  REA  G+ GGR+ EIQR+IGR+LR++ DL  LG R I+IDCDV+QA
Sbjct: 68  EYSMLPRATQVRSAREATRGKVGGRTSEIQRLIGRSLRAICDLEMLGERTILIDCDVLQA 127

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS-QVLKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTAAITGA+VALHD +  +     + QLS   L+  V+A+S G++ G+P++DLDY 
Sbjct: 128 DGGTRTAAITGAYVALHDAVYGL---VRENQLSDSPLRDSVSAVSVGLVDGHPLLDLDYA 184

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           ED    VD NFV+T SGH VEVQG+AE   FS +    + NLA     DL +LQ
Sbjct: 185 EDFRAAVDMNFVITGSGHFVEVQGTAEERPFSMEELDDLRNLALAGCRDLHRLQ 238


>gi|148260661|ref|YP_001234788.1| ribonuclease PH [Acidiphilium cryptum JF-5]
 gi|146402342|gb|ABQ30869.1| RNAse PH [Acidiphilium cryptum JF-5]
          Length = 243

 Score =  241 bits (614), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 116/230 (50%), Positives = 159/230 (69%), Gaps = 2/230 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  + +R++ +    S++AEGS L++ G T +L  A++E +VP ++R    GW+TA
Sbjct: 6   RPSGRMADALRQVEIVTGFSRHAEGSALIRMGGTEVLCAASVEGRVPGFLRGAGQGWVTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVD +ALG   I +DCDV+ A
Sbjct: 66  EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVVDRTALGEMTITLDCDVLNA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR AAITGAWVAL   ++ +   +     +  L G VAA+SCG+  G P++DLDY E
Sbjct: 126 DGGTRCAAITGAWVALALAIRTLRKAN--VIATDPLIGQVAAVSCGVFGGVPVLDLDYAE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           DS  + DANFV+T +G IVE+Q +AERATF +  F  +L LA+   A+L 
Sbjct: 184 DSNAEADANFVLTGTGGIVEIQATAERATFEEATFGTLLGLARKGTAELF 233


>gi|145297207|ref|YP_001140048.1| ribonuclease PH [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142849979|gb|ABO88300.1| ribonuclease PH [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 240

 Score =  241 bits (614), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 123/239 (51%), Positives = 165/239 (69%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R S R   Q+R +++TR  +K+AEGS LV+FG+T +L TA+++  VP +++    GW+TA
Sbjct: 3   RPSDRSAAQLRPVTITRNFTKHAEGSVLVEFGNTRVLCTASVDTSVPRFLKGKGQGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST +R+ REA +G+Q GR+ EI R+I R+LR+ VDL+ALG   I +DCDV+QA
Sbjct: 63  EYGMLPRSTHSRMNREAAAGKQSGRTLEISRLIARSLRAAVDLTALGEHSITVDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTA+ITGA VAL D L  M +   K  + Q  LK  +AA+S GM  G  I DL+Y 
Sbjct: 123 DGGTRTASITGACVALVDALNWMVE---KGMIKQSPLKQMIAAVSVGMYQGEAICDLEYI 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT+ G I+EVQG+AE   F+ +   AML LAK  I ++I LQK  +S
Sbjct: 180 EDSAAETDMNVVMTEDGRIIEVQGTAEAEPFTHEELLAMLGLAKGGIEEIIALQKQSLS 238


>gi|152972490|ref|YP_001337636.1| ribonuclease PH [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|206579777|ref|YP_002235994.1| ribonuclease PH [Klebsiella pneumoniae 342]
 gi|238897086|ref|YP_002921832.1| ribonuclease PH [Klebsiella pneumoniae NTUH-K2044]
 gi|290511794|ref|ZP_06551162.1| ribonuclease PH [Klebsiella sp. 1_1_55]
 gi|166228287|sp|A6TFN5|RNPH_KLEP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736914|sp|B5XTF9|RNPH_KLEP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|150957339|gb|ABR79369.1| ribonuclease PH [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|206568835|gb|ACI10611.1| ribonuclease PH [Klebsiella pneumoniae 342]
 gi|238549414|dbj|BAH65765.1| ribonuclease PH [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|289775584|gb|EFD83584.1| ribonuclease PH [Klebsiella sp. 1_1_55]
          Length = 238

 Score =  241 bits (614), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 126/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA+++E VP +++    GWIT
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   + K + +  +KG VAA+S G++ G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKLV-AAGKLK-TNPMKGMVAAVSVGIVNGEAICDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  +I  QK  + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIITTQKAALEN 238


>gi|296114411|ref|ZP_06833065.1| ribonuclease PH [Gluconacetobacter hansenii ATCC 23769]
 gi|295979172|gb|EFG85896.1| ribonuclease PH [Gluconacetobacter hansenii ATCC 23769]
          Length = 242

 Score =  241 bits (614), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 117/242 (48%), Positives = 164/242 (67%), Gaps = 2/242 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  + +R +S+    +++AEGS L++ G T +L  A++E +VP ++R    GW+T
Sbjct: 1   MRPSGRAIDALRPVSIQTGFARHAEGSALIRMGGTEVLCAASIESRVPPFLRGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I RALR+ +DL ALG   I +DCDV+ 
Sbjct: 61  AEYGMLPRATHSRGPREAAKGKQGGRTHEIQRLIARALRAGIDLRALGEISITVDCDVLN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR AAITGAWVAL   L  +   +    L   +   VAA+SCG+     ++DLDY 
Sbjct: 121 ADGGTRCAAITGAWVALRLALDGLVRANVIPALP--ITAQVAAVSCGLTGAGAVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS    DANFV+T++G IVE+QG+AE+A FSQ+ F  ++ LA+   A L ++Q+D ++ 
Sbjct: 179 EDSNAVADANFVLTETGGIVEIQGTAEQAPFSQEQFNELMRLAQVGTAQLFEIQRDAVAQ 238

Query: 241 EV 242
            V
Sbjct: 239 AV 240


>gi|289662153|ref|ZP_06483734.1| ribonuclease PH [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 240

 Score =  241 bits (614), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 122/238 (51%), Positives = 162/238 (68%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R + + R  +++AEGS LV FGDT +L TA++E +VP ++R    GW+TA
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPNFLRGKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +    +  +    L G VAA+S G+  G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  +  L  LQ+  ++
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMDALFALQRAALA 240


>gi|257878167|ref|ZP_05657820.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,230,933]
 gi|257881049|ref|ZP_05660702.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,502]
 gi|257889634|ref|ZP_05669287.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,410]
 gi|257892426|ref|ZP_05672079.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,408]
 gi|260559214|ref|ZP_05831400.1| ribonuclease PH/Ham1 protein [Enterococcus faecium C68]
 gi|261207747|ref|ZP_05922432.1| ribonuclease PH/Ham1 protein [Enterococcus faecium TC 6]
 gi|289565822|ref|ZP_06446264.1| ribonuclease PH [Enterococcus faecium D344SRF]
 gi|293563126|ref|ZP_06677591.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1162]
 gi|294614004|ref|ZP_06693934.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1636]
 gi|294617101|ref|ZP_06696767.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1679]
 gi|294623312|ref|ZP_06702174.1| ribonuclease PH/Ham1 protein [Enterococcus faecium U0317]
 gi|314939893|ref|ZP_07847099.1| ribonuclease PH [Enterococcus faecium TX0133a04]
 gi|314943740|ref|ZP_07850479.1| ribonuclease PH [Enterococcus faecium TX0133C]
 gi|314949696|ref|ZP_07853014.1| ribonuclease PH [Enterococcus faecium TX0082]
 gi|314953242|ref|ZP_07856181.1| ribonuclease PH [Enterococcus faecium TX0133A]
 gi|314993678|ref|ZP_07859026.1| ribonuclease PH [Enterococcus faecium TX0133B]
 gi|314997405|ref|ZP_07862356.1| ribonuclease PH [Enterococcus faecium TX0133a01]
 gi|257812395|gb|EEV41153.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,230,933]
 gi|257816707|gb|EEV44035.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,502]
 gi|257825994|gb|EEV52620.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,410]
 gi|257828805|gb|EEV55412.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,408]
 gi|260074971|gb|EEW63287.1| ribonuclease PH/Ham1 protein [Enterococcus faecium C68]
 gi|260078130|gb|EEW65836.1| ribonuclease PH/Ham1 protein [Enterococcus faecium TC 6]
 gi|289162365|gb|EFD10223.1| ribonuclease PH [Enterococcus faecium D344SRF]
 gi|291593111|gb|EFF24690.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1636]
 gi|291596638|gb|EFF27865.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1679]
 gi|291597280|gb|EFF28469.1| ribonuclease PH/Ham1 protein [Enterococcus faecium U0317]
 gi|291604904|gb|EFF34373.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1162]
 gi|313588540|gb|EFR67385.1| ribonuclease PH [Enterococcus faecium TX0133a01]
 gi|313591852|gb|EFR70697.1| ribonuclease PH [Enterococcus faecium TX0133B]
 gi|313594708|gb|EFR73553.1| ribonuclease PH [Enterococcus faecium TX0133A]
 gi|313597603|gb|EFR76448.1| ribonuclease PH [Enterococcus faecium TX0133C]
 gi|313640856|gb|EFS05436.1| ribonuclease PH [Enterococcus faecium TX0133a04]
 gi|313643954|gb|EFS08534.1| ribonuclease PH [Enterococcus faecium TX0082]
          Length = 451

 Score =  241 bits (614), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 122/242 (50%), Positives = 162/242 (66%), Gaps = 3/242 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+  ++R++ L   V KY EGS +++FGDT ++ +AT+E  VP ++R T  GW+T
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIENSVPPFLRETGTGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R II+DCDVIQ
Sbjct: 61  AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   ++ +     K      +K H+AA+S G+L  G  + DLDY
Sbjct: 121 ADGGTRTASITGAFVALKLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N VMT+SG  VE+QG+ E ATF  +    ML   K+ I DLIK QK  + 
Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238

Query: 240 NE 241
            E
Sbjct: 239 TE 240


>gi|293572585|ref|ZP_06683559.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E980]
 gi|291607368|gb|EFF36716.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E980]
          Length = 451

 Score =  241 bits (614), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 122/242 (50%), Positives = 163/242 (67%), Gaps = 3/242 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+  ++R++ L   V KY EGS +++FGDT ++ +AT+E+ VP ++R T  GW+T
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATVEDSVPPFLRETGTGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+IGR+LR+V+DL  LG R IIIDCDVIQ
Sbjct: 61  AEYSMLPRATSTRNRRESNKGKLSGRTMEIQRLIGRSLRAVIDLEKLGERSIIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   ++ +     K      +K H+AA+S G+L  G  + DLDY
Sbjct: 121 ADGGTRTASITGAFVALRLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N VMT+SG  VE+QG+ E ATF  +    ML   K+ I DLIK QK  + 
Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238

Query: 240 NE 241
            E
Sbjct: 239 TE 240


>gi|148553491|ref|YP_001261073.1| ribonuclease PH [Sphingomonas wittichii RW1]
 gi|166228323|sp|A5V3R9|RNPH_SPHWW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|148498681|gb|ABQ66935.1| RNAse PH [Sphingomonas wittichii RW1]
          Length = 238

 Score =  241 bits (614), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 116/214 (54%), Positives = 154/214 (71%), Gaps = 2/214 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +QMR IS+    + +AEGS L+ FGDT +L TA++EEKVP ++R    GW+T
Sbjct: 1   MRPSGRAPDQMRAISIETGFTVHAEGSVLISFGDTRVLVTASVEEKVPPFLRGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVD++ LG RQI+IDCDV+Q
Sbjct: 61  AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDMAKLGERQIVIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+G WVAL   +  +   ++       +   VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASISGGWVALRLAVDKL--LASGAIAEDPITAQVAAISCGIHEGTPVLDLDYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
           EDS    DANFV+ D+G+I E Q +AE AT+ ++
Sbjct: 179 EDSNAHADANFVLLDNGNIAEAQATAEGATYDEE 212


>gi|289668014|ref|ZP_06489089.1| ribonuclease PH [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 241

 Score =  241 bits (614), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 122/238 (51%), Positives = 162/238 (68%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R + + R  +++AEGS LV FGDT +L TA++E +VP ++R    GW+TA
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPNFLRGKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +    +  +    L G VAA+S G+  G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  +  L  LQ+  ++
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMDALFALQRAALA 240


>gi|269797499|ref|YP_003311399.1| ribonuclease PH [Veillonella parvula DSM 2008]
 gi|269094128|gb|ACZ24119.1| ribonuclease PH [Veillonella parvula DSM 2008]
          Length = 251

 Score =  241 bits (614), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 123/240 (51%), Positives = 163/240 (67%), Gaps = 4/240 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R   Q+R I +TR  ++YAEGS L++ G T ++ TAT+E+ VP W++ +  GW+T
Sbjct: 1   MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATVEDSVPRWLKGSGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY +LPRST  RV REA  G+Q GR+ EIQR+IGRALR+VVDL ALG R I IDCDVIQ
Sbjct: 61  AEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D +      + KF ++       AAIS G+    PI DL Y 
Sbjct: 121 ADGGTRTASITGAFVALVDAVDFTFGGAGKFPITD----FCAAISVGIGPEGPITDLCYE 176

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N V T SG++VEVQG+ E  TF++D   A+L+LA+    +L+  Q++V+ +
Sbjct: 177 EDSAAIVDMNVVRTGSGNMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQREVLGS 236


>gi|28198628|ref|NP_778942.1| ribonuclease PH [Xylella fastidiosa Temecula1]
 gi|71274728|ref|ZP_00651016.1| Ribonuclease PH [Xylella fastidiosa Dixon]
 gi|71899591|ref|ZP_00681746.1| Ribonuclease PH [Xylella fastidiosa Ann-1]
 gi|71900258|ref|ZP_00682395.1| Ribonuclease PH [Xylella fastidiosa Ann-1]
 gi|170730030|ref|YP_001775463.1| ribonuclease PH [Xylella fastidiosa M12]
 gi|182681311|ref|YP_001829471.1| ribonuclease PH [Xylella fastidiosa M23]
 gi|32129976|sp|Q87DG3|RNPH_XYLFT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736953|sp|B2IA38|RNPH_XYLF2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736954|sp|B0U6W7|RNPH_XYLFM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|28056712|gb|AAO28591.1| ribonuclease PH [Xylella fastidiosa Temecula1]
 gi|71164460|gb|EAO14174.1| Ribonuclease PH [Xylella fastidiosa Dixon]
 gi|71729971|gb|EAO32065.1| Ribonuclease PH [Xylella fastidiosa Ann-1]
 gi|71730633|gb|EAO32709.1| Ribonuclease PH [Xylella fastidiosa Ann-1]
 gi|167964823|gb|ACA11833.1| tRNA nucleotidyltransferase [Xylella fastidiosa M12]
 gi|182631421|gb|ACB92197.1| ribonuclease PH [Xylella fastidiosa M23]
 gi|307579762|gb|ADN63731.1| ribonuclease PH [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 241

 Score =  241 bits (614), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 123/239 (51%), Positives = 167/239 (69%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGRQ + +R + + R  + +AEGS LV FG+T ++ TA++E KVP+++RN   GWITA
Sbjct: 5   RPSGRQADALRPVRIERAFTCHAEGSVLVSFGNTLVVCTASVEAKVPVFLRNKGEGWITA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R +REA  G+Q GR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRSTHTRSEREAARGKQAGRTLEIQRLIGRALRTCVDRTALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTAAITGA+VAL D ++ +E    + QL +  L G VAA+S G+  G P++DLDY 
Sbjct: 125 DGGTRTAAITGAYVALVDAVRCLE---QRGQLKKSPLIGAVAAVSVGIYRGMPVLDLDYP 181

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VM D G  +E+QG+AE+  F +     +L LA+   A L  +Q++ ++
Sbjct: 182 EDSDCDTDMNVVMNDEGGFIELQGTAEQQAFRRGELDMLLALAERGTAMLFDIQREALA 240


>gi|322383243|ref|ZP_08057054.1| ribonuclease PH-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152512|gb|EFX45298.1| ribonuclease PH-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 251

 Score =  241 bits (614), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 169/239 (70%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GRQ N++R + +T   +K+AEGS L++ GDT ++ TAT+EE+VP +++N   GW+T
Sbjct: 1   MRADGRQPNELRPVRITPNYNKHAEGSVLIEVGDTKVICTATIEERVPPFLKNEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +REA  G+ GGR+ EIQR+IGRALRSV++L ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATQVRNQREASKGKLGGRTMEIQRLIGRALRSVINLEALGERSITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQH-MEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRT +ITGA++A+   +   MED   K  ++ +   ++A++S G++ G  ++DL Y
Sbjct: 121 ADGGTRTTSITGAFIAMSLAIHKLMED--KKITVNPITD-YLASVSVGIVQGETLLDLMY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT  GH VEVQG+ E + FS+D    ML LA++ I  LI+LQ++ +
Sbjct: 178 TEDSQAHVDMNVVMTGRGHFVEVQGTGEESPFSKDDLDRMLGLAEEGILRLIELQREAL 236


>gi|262040695|ref|ZP_06013932.1| tRNA nucleotidyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329996940|ref|ZP_08302637.1| tRNA nucleotidyltransferase [Klebsiella sp. MS 92-3]
 gi|259041961|gb|EEW42995.1| tRNA nucleotidyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328539230|gb|EGF65259.1| tRNA nucleotidyltransferase [Klebsiella sp. MS 92-3]
          Length = 251

 Score =  241 bits (614), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 126/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA+++E VP +++    GWIT
Sbjct: 14  MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWIT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 74  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   + K + +  +KG VAA+S G++ G  I DL+Y 
Sbjct: 134 ADGGTRTASITGACVALADALNKLV-AAGKLK-TNPMKGMVAAVSVGIVNGEAICDLEYI 191

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  +I  QK  + N
Sbjct: 192 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIITTQKAALEN 251


>gi|24375740|ref|NP_719783.1| ribonuclease PH [Shewanella oneidensis MR-1]
 gi|61216058|sp|Q8E9L4|RNPH_SHEON RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|24350681|gb|AAN57227.1|AE015858_8 ribonuclease PH [Shewanella oneidensis MR-1]
          Length = 237

 Score =  241 bits (614), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 121/239 (50%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q R I++TR+ + +AEGS LV+FG+T +L TA+  E VP +++    GW+T
Sbjct: 1   MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+Q GR+QEIQR+IGRALR+ VD+ ALG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L            S  LK  +AA+S G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALNWAR--GKGIIKSNPLKFLIAAVSVGIYNGEAISDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G I+E+QG+AE   F+ +    +L LAK+ I +++ +QK  ++
Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFTHEELIELLGLAKNSIREIVDVQKAALN 237


>gi|157149261|ref|YP_001456580.1| ribonuclease PH [Citrobacter koseri ATCC BAA-895]
 gi|166228276|sp|A8ARN1|RNPH_CITK8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157086466|gb|ABV16144.1| hypothetical protein CKO_05101 [Citrobacter koseri ATCC BAA-895]
          Length = 238

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 124/240 (51%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +   +N    +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   FS +    +L LA+  I  ++  QK  + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 238


>gi|320539880|ref|ZP_08039539.1| defective ribonuclease PH [Serratia symbiotica str. Tucson]
 gi|320030066|gb|EFW12086.1| defective ribonuclease PH [Serratia symbiotica str. Tucson]
          Length = 238

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 123/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR    +R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPVGRAPQHVRPLTLTRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   II+DCDV+Q
Sbjct: 61  AEYSMLPRSTHSRNVREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTIILDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   +N    +  +KG VAA+S G+L G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALIDALNAL--VANGKLKANPMKGLVAAVSVGILNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G ++EVQG+AE   FS D   A+L LA+  I  + + QK  ++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELMALLTLARGGIETIFQAQKAALA 237


>gi|241667227|ref|ZP_04754805.1| tRNA nucleotidyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254875778|ref|ZP_05248488.1| ribonuclease PH [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254841799|gb|EET20213.1| ribonuclease PH [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 235

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 115/232 (49%), Positives = 161/232 (69%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R + +T   +K+AEGS L++FGDT +L TA++   VP + +++  GW+T
Sbjct: 1   MRPSGRNNDQLRTLKVTHNFTKHAEGSVLIEFGDTKVLCTASVVAGVPRFKKDSGEGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGRALR+ VDL+ +G   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTKIGENTIKVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +A+ D + +M+      + +  L   VAAIS G+    P++DLDY 
Sbjct: 121 ADGGTRTASITGASLAIRDAIDYMKQNGMLDEQTNPLMSQVAAISVGIYNNEPVLDLDYD 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           EDS  + D N VM  +G ++E+QG+AE   FS++ F  ML LAK  I ++ +
Sbjct: 181 EDSNAETDMNVVMNSNGGMIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFE 232


>gi|332995822|gb|AEF05877.1| ribonuclease PH [Alteromonas sp. SN2]
          Length = 237

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 121/239 (50%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  NQ+R +++TR+ + +AEGS LV+FG+T +L  AT+EE VP +++    GWIT
Sbjct: 1   MRPSGRTANQIRPVTITRQYTCHAEGSVLVEFGNTKVLCNATVEEGVPRFMKGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYSMLPRATHTRSGREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L +M   S     +  LK  +AA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALTYMR--SKGILKANPLKHMIAALSVGIYKGTPIADLEYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G ++EVQG+AE   F+ +    ML +AK  + +L  +QK  ++
Sbjct: 179 EDSVAETDMNIVMTETGKLIEVQGTAEGEPFAFEELDEMLTIAKHGLRELFDIQKAALA 237


>gi|261341748|ref|ZP_05969606.1| hypothetical protein ENTCAN_08227 [Enterobacter cancerogenus ATCC
           35316]
 gi|288316116|gb|EFC55054.1| tRNA nucleotidyltransferase [Enterobacter cancerogenus ATCC 35316]
          Length = 238

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 125/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPSGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKVLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   + K + +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKLV-AAGKLK-TNPMKGMVAAVSVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +   ++L LA+  I  ++  QK  + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLSLLALARGGIESIVTTQKAALEN 238


>gi|183597211|ref|ZP_02958704.1| hypothetical protein PROSTU_00454 [Providencia stuartii ATCC 25827]
 gi|188023525|gb|EDU61565.1| hypothetical protein PROSTU_00454 [Providencia stuartii ATCC 25827]
          Length = 237

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 164/239 (68%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR  +QMR I ++R  +K+AEGS L++FGDT +L  AT+EE VP +++    GW+T
Sbjct: 1   MRPEGRMADQMRPIKISRNYTKHAEGSVLIEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+Q GR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATNSRNQREAAKGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTAAI+GA VAL D L  M +   + +L+Q  LK  VAA+S G++ G  + DL+Y
Sbjct: 121 ADGGTRTAAISGACVALVDALNKMVE---QGKLAQSPLKSMVAAVSVGIVDGEALCDLEY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS  + D N VM D G ++EVQG+AE   FS D   ++L LAK  +  + + Q++ +
Sbjct: 178 VEDSAAETDMNVVMMDDGRMIEVQGTAEGEPFSHDELLSLLALAKTGLGSIFEAQREAL 236


>gi|260219850|emb|CBA26795.1| Ribonuclease PH [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 242

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 120/240 (50%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R  + +R + +TR  + +AEGS L++FG+T +L TA++EEKVP   R +  GW+T
Sbjct: 5   VRQGARAADALRPVRITRHYTMHAEGSVLIEFGNTKVLCTASVEEKVPPHKRGSGEGWVT 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+Q GR+QEIQR+IGR+LR+V DL  LG R I +DCDVIQ
Sbjct: 65  AEYGMLPRATHSRSDREAARGKQTGRTQEIQRLIGRSLRAVFDLKKLGERTIQLDCDVIQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VA  D +  +       +    +   VAAIS G++ G P++DL+Y 
Sbjct: 125 ADGGTRTAAITGAFVAAQDAVNGLLAAGKITETP--ITAAVAAISVGIVEGTPLLDLEYT 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT +GH VEVQG+AE  TF++     +L LA+  + +L+ LQ+ V+S 
Sbjct: 183 EDSACDTDMNVVMTGAGHFVEVQGTAEGVTFTRAEMDQLLTLAEKGVGELMLLQQQVLSK 242


>gi|121534591|ref|ZP_01666413.1| ribonuclease PH [Thermosinus carboxydivorans Nor1]
 gi|121306843|gb|EAX47763.1| ribonuclease PH [Thermosinus carboxydivorans Nor1]
          Length = 246

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 127/239 (53%), Positives = 163/239 (68%), Gaps = 5/239 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GRQ   +R IS+TR   K+AEGS  ++ GDT ++  ATLE+KVP +++ T  GWIT
Sbjct: 1   MRIDGRQAADLRPISITRHYLKHAEGSVFIEVGDTKVICAATLEDKVPPFLKGTGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY +LPRST  R  REA  GR  GR+ EIQR+IGRALRSVVDL ALG R I IDCDVIQ
Sbjct: 61  AEYSLLPRSTQTRNIREAAKGRLTGRTHEIQRLIGRALRSVVDLKALGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHM-EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL D +  +  D    F     +K  +AA+S G++ G  ++DL Y
Sbjct: 121 ADGGTRTASITGAFVALVDAVNTIYTDPEKPFP----VKDFLAAVSVGVVDGAAVLDLCY 176

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT +G +VEVQG+ E+  F++     ML L +  IA+LI  QK+V+
Sbjct: 177 AEDSAAVVDMNIVMTGNGDLVEVQGTGEKHPFTKAQLAEMLALGERGIAELIDYQKEVL 235


>gi|110833067|ref|YP_691926.1| ribonuclease PH [Alcanivorax borkumensis SK2]
 gi|123345879|sp|Q0VT66|RNPH_ALCBS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|110646178|emb|CAL15654.1| ribonuclease PH [Alcanivorax borkumensis SK2]
          Length = 238

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 120/235 (51%), Positives = 161/235 (68%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+RE+S TR  + +AEGS LV FG+T +L TA++E+ VP +++    GW+T
Sbjct: 1   MRPSGRAPDQLRELSFTRNYTVHAEGSVLVAFGNTKVLCTASVEDGVPRFLKGKGQGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST  R  REA  G+QGGR+ EIQR+IGR+LR+ VD+ ALG R I +DCDV+Q
Sbjct: 61  AEYSMLPRSTHTRSGREATRGKQGGRTLEIQRLIGRSLRAAVDMKALGERTIYLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D   ++     K   +  L G V A+S GM    P++DLDY 
Sbjct: 121 ADGGTRTASISGACVALVDAFTYL--LETKKIKNDPLTGLVGAVSVGMYKDTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS    D N VMT  G  +E+QGSAE A F+++    +L LA++ I ++IK Q+
Sbjct: 179 EDSNAGTDMNVVMTQQGGFIEIQGSAEGAPFTREQSDNLLELAENGIGEIIKAQQ 233


>gi|167720743|ref|ZP_02403979.1| ribonuclease PH [Burkholderia pseudomallei DM98]
          Length = 219

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/221 (53%), Positives = 161/221 (72%), Gaps = 2/221 (0%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           MR++ +TR  +K+AEG+ LV+FGDT ++ TA++ E+VP ++R    GW+TAEYGMLPR+T
Sbjct: 1   MRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLTAEYGMLPRAT 60

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
             R  REA  G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQADGGTRTA+I
Sbjct: 61  HTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQADGGTRTASI 120

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
           TGA+VA HD +  +   + +   S +   +VAAIS G+  G P++DLDY EDS  D D N
Sbjct: 121 TGAFVAAHDAVTKLV-AAGRIARSPITD-YVAAISVGVFGGTPVLDLDYDEDSACDTDMN 178

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
            VMT +G  VEVQG+AE A FS+    A+L+LA+  I +L+
Sbjct: 179 VVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELV 219


>gi|83589383|ref|YP_429392.1| ribonuclease PH [Moorella thermoacetica ATCC 39073]
 gi|123524979|sp|Q2RL40|RNPH_MOOTA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|83572297|gb|ABC18849.1| RNAse PH [Moorella thermoacetica ATCC 39073]
          Length = 250

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 123/240 (51%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R +GR   ++R +++ R   KYAEGS L+  GDT ++ +AT+EEKVP +++NT  GWIT
Sbjct: 2   LRANGRGLRELRPVTIERHYLKYAEGSALITVGDTRVICSATVEEKVPPFLKNTGKGWIT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY +LPRST  R  RE   GR  GR+QEIQR+IGR+LRSVVD+S LG R I +DCDV+Q
Sbjct: 62  AEYSLLPRSTKERTIREVTRGRLTGRTQEIQRLIGRSLRSVVDMSLLGERTIWLDCDVLQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VAL + L  +        +   LK  +AA+S G++    I+DLD+ 
Sbjct: 122 ADGGTRTAAITGSFVALAEALAGLVAAGGVPAMP--LKDFLAAVSVGLVDDELILDLDFQ 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VMT SG +VEVQG+AE   F+++   AML+LA + I  LI +QK V+ +
Sbjct: 180 EDSHAGVDMNVVMTGSGQLVEVQGTAEGRPFTREQLTAMLDLAGEGIESLIAIQKQVLGD 239


>gi|238020106|ref|ZP_04600532.1| hypothetical protein VEIDISOL_01987 [Veillonella dispar ATCC 17748]
 gi|237863630|gb|EEP64920.1| hypothetical protein VEIDISOL_01987 [Veillonella dispar ATCC 17748]
          Length = 251

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 123/238 (51%), Positives = 162/238 (68%), Gaps = 4/238 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R   Q+R I +TR  ++YAEGS L++ G T ++ TAT+E+ VP W++ +  GW+T
Sbjct: 1   MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATVEDSVPRWLKGSGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY +LPRST  RV REA  G+Q GR+ EIQR+IGRALR+VVDL ALG R I IDCDVIQ
Sbjct: 61  AEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D +      + KF ++       AAIS G+    PI DL Y 
Sbjct: 121 ADGGTRTASITGAFVALVDAVDFTFGGAGKFPITD----FCAAISVGIGPEGPITDLCYE 176

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS   VD N V T SG++VEVQG+ E  TF++D   A+L+LA+    +L+  Q++V+
Sbjct: 177 EDSAAIVDMNVVRTGSGNMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQREVL 234


>gi|85708632|ref|ZP_01039698.1| RNase PH [Erythrobacter sp. NAP1]
 gi|85690166|gb|EAQ30169.1| RNase PH [Erythrobacter sp. NAP1]
          Length = 227

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/228 (52%), Positives = 156/228 (68%), Gaps = 2/228 (0%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           MR I++    +K+AEGSCL+ FGDT +L TA++EE++P W+R    GW+T EY MLPR+T
Sbjct: 1   MRTITIETGYTKHAEGSCLISFGDTKVLCTASVEERIPPWLRGKGEGWVTGEYSMLPRAT 60

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
             R  REA  G+Q GR+QEIQR+IGR+LR+VVDL  LG RQI +DCDVIQADGGTRTA+I
Sbjct: 61  HTRGSREAARGKQSGRTQEIQRLIGRSLRAVVDLQKLGERQITLDCDVIQADGGTRTASI 120

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
           +GAWVAL   +  +   +        + G VAAISCG+  G P++DLDY EDS+ D DAN
Sbjct: 121 SGAWVALRLAVSKL--MAEGAIKEDPITGQVAAISCGIFEGTPVLDLDYDEDSSADADAN 178

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           FV+ D G I EVQ +AE AT+ ++    +L LA      + K Q D +
Sbjct: 179 FVLIDGGQIAEVQATAEGATYDEEGLLRLLRLANIGCDAIFKAQLDAV 226


>gi|257884710|ref|ZP_05664363.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,501]
 gi|257820548|gb|EEV47696.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,501]
          Length = 451

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 121/242 (50%), Positives = 163/242 (67%), Gaps = 3/242 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+  ++R++ L   V KY EGS +++FGDT ++ +AT+E+ VP ++R T  GW+T
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R II+DCDVIQ
Sbjct: 61  AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA+V+L   ++ +     K      +K H+AA+S G+L  G  + DLDY
Sbjct: 121 ADGGTRTASITGAFVSLKLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N VMT+SG  VE+QG+ E ATF  +    ML   K+ I DLIK QK  + 
Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238

Query: 240 NE 241
            E
Sbjct: 239 TE 240


>gi|26991970|ref|NP_747395.1| ribonuclease PH [Pseudomonas putida KT2440]
 gi|148550402|ref|YP_001270504.1| ribonuclease PH [Pseudomonas putida F1]
 gi|61216052|sp|Q88C89|RNPH_PSEPK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228303|sp|A5WB10|RNPH_PSEP1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|24987100|gb|AAN70859.1|AE016730_5 ribonuclease PH [Pseudomonas putida KT2440]
 gi|148514460|gb|ABQ81320.1| RNAse PH [Pseudomonas putida F1]
          Length = 240

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRVADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++      +    LK  +AA+S GM  G  ++DLDY E
Sbjct: 123 DGGTRTASITGAMVALCDALAVIKK-RGGLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  + F AML LA+  + ++ +LQ+  +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMNEIFELQQAALAD 240


>gi|326797277|ref|YP_004315097.1| ribonuclease PH [Marinomonas mediterranea MMB-1]
 gi|326548041|gb|ADZ93261.1| Ribonuclease PH [Marinomonas mediterranea MMB-1]
          Length = 241

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 114/238 (47%), Positives = 166/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R +  TR  +K+AEGS L++ GDT ++ TAT+   VP +++    GWIT
Sbjct: 1   MRPSGRAADQLRPMKFTRNFTKHAEGSVLIECGDTKVICTATVVSGVPRFLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+IGR+LR+ +DL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMDREAARGKQGGRTVEIQRLIGRSLRAAIDLKKLGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+G +VAL D ++ + +   K + + ++   +AAIS G+  G P++DLDY 
Sbjct: 121 ADGGTRTASISGGFVALADAVKTLVE-QKKLKENPIVS-QIAAISVGVYKGTPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N +M D G  +E+QG+AE A F  +    ML++A+  I +++++Q+ V+
Sbjct: 179 EDSNAETDMNVIMNDKGGFIEIQGTAEGAAFGDEQMMGMLSVARKGINEIMEMQRQVL 236


>gi|120597163|ref|YP_961737.1| ribonuclease PH [Shewanella sp. W3-18-1]
 gi|146291563|ref|YP_001181987.1| ribonuclease PH [Shewanella putrefaciens CN-32]
 gi|166228319|sp|A4Y2K5|RNPH_SHEPC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228321|sp|A1RET8|RNPH_SHESW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|120557256|gb|ABM23183.1| RNAse PH [Shewanella sp. W3-18-1]
 gi|145563253|gb|ABP74188.1| RNAse PH [Shewanella putrefaciens CN-32]
 gi|319424735|gb|ADV52809.1| ribonuclease PH [Shewanella putrefaciens 200]
          Length = 237

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 121/239 (50%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q R I++TR+ + +AEGS LV+FG+T +L TA+  E VP +++    GW+T
Sbjct: 1   MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+Q GR+QEIQR+IGRALR+ VD+ ALG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L            S  LK  +AA+S G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALNWAR--GKGIIKSNPLKFLIAAVSVGIYKGEAISDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G I+E+QG+AE   F+ +    +L LAK+ I +++ +QK  ++
Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFTHEELIELLGLAKNSIREIVDVQKAALN 237


>gi|303241597|ref|ZP_07328096.1| ribonuclease PH [Acetivibrio cellulolyticus CD2]
 gi|302590817|gb|EFL60566.1| ribonuclease PH [Acetivibrio cellulolyticus CD2]
          Length = 282

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 124/247 (50%), Positives = 176/247 (71%), Gaps = 9/247 (3%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR+++ +R++ +TR   K+AEGS L++ GDT ++ TA++++KVP + +N+  GW+T
Sbjct: 25  LRIDGREKSNLRKVKITRNYIKHAEGSVLIEMGDTKVICTASVDDKVPPFKKNSGEGWVT 84

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRSTG R +R+    +  GRSQEIQR+IGRALRSVV+  ALG R IIIDCDVIQ
Sbjct: 85  AEYSMLPRSTGVRNQRDISKLKLNGRSQEIQRLIGRALRSVVNFHALGERAIIIDCDVIQ 144

Query: 121 ADGGTRTAAITGAWVALHD-CLQHMED-CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ADGGTRTA+ITGA+VA+ D C + +ED    K  ++ +    VAA+S G++    ++DL 
Sbjct: 145 ADGGTRTASITGAFVAMVDACKKLVEDGVIEKIPITDM----VAAVSVGIIGDEEMLDLC 200

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV- 237
           YGEDS   VD N VMT SG  +EVQ + E++ F +D    +L+LA+  I +LI +QKDV 
Sbjct: 201 YGEDSNAVVDMNVVMTSSGEFIEVQATGEQSPFRRDQLNKLLDLAEVGIKELISIQKDVL 260

Query: 238 --ISNEV 242
             +SNE+
Sbjct: 261 GQVSNEI 267


>gi|226952284|ref|ZP_03822748.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter sp. ATCC 27244]
 gi|294648770|ref|ZP_06726228.1| tRNA nucleotidyltransferase [Acinetobacter haemolyticus ATCC 19194]
 gi|226836950|gb|EEH69333.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter sp. ATCC 27244]
 gi|292825340|gb|EFF84085.1| tRNA nucleotidyltransferase [Acinetobacter haemolyticus ATCC 19194]
          Length = 238

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 124/238 (52%), Positives = 162/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R  +Q+RE+ +TR  ++YAEGS LV+FG T +L TA+++  VP +++    GW+T
Sbjct: 1   MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR++VDL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D +  +   SNK      LKG +AAIS GM     ++DL Y 
Sbjct: 121 ADGGTRTAAITGAAVALVDAMNVL--LSNKKIKQDPLKGLIAAISVGMYQDEVLLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS    D N VMT +G  +E+QG+AE   F++    AML LA+  IA+LI+ Q+  +
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRQQCNAMLELAEKGIAELIQKQQQAL 236


>gi|237728940|ref|ZP_04559421.1| ribonuclease PH [Citrobacter sp. 30_2]
 gi|283787723|ref|YP_003367588.1| ribonuclease PH [Citrobacter rodentium ICC168]
 gi|226909562|gb|EEH95480.1| ribonuclease PH [Citrobacter sp. 30_2]
 gi|282951177|emb|CBG90870.1| ribonuclease PH [Citrobacter rodentium ICC168]
          Length = 238

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 125/240 (52%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA+++E VP +++    GWIT
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   S K + +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKLV-ASGKLK-TNPMKGMVAAVSVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   FS +    +L LA+  I  ++  QK  + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 238


>gi|227115107|ref|ZP_03828763.1| ribonuclease PH [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 238

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 118/235 (50%), Positives = 160/235 (68%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++ TR  +K+AEGS LV+FGDT +L  AT+EE VP +++    GW+T
Sbjct: 1   MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ +DL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNSREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  M     K +    +KG +AA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNQMV-AKGKLK-KNPMKGMIAAVSVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  + D N VMT+ G ++EVQG+AE   FS D    +L LA+  I  +++ QK
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLTLLALARGGIDTIVQAQK 233


>gi|254369050|ref|ZP_04985063.1| ribonuclease PH [Francisella tularensis subsp. holarctica FSC022]
 gi|157121971|gb|EDO66141.1| ribonuclease PH [Francisella tularensis subsp. holarctica FSC022]
          Length = 235

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 115/231 (49%), Positives = 161/231 (69%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R + +T   +K+AEGS L++FGDT ++ TA++   VP + +++  GW+ 
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLI 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGRALR+ VDL+A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHMRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +A+ D +++M+      + +  L   VAAIS G+    P++DLDY 
Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGILDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           EDS  + D N VM  +G I+E+QG+AE   FS++ F  ML LAK  I ++ 
Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIF 231


>gi|262281423|ref|ZP_06059204.1| ribonuclease PH [Acinetobacter calcoaceticus RUH2202]
 gi|262257249|gb|EEY75986.1| ribonuclease PH [Acinetobacter calcoaceticus RUH2202]
          Length = 238

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 123/238 (51%), Positives = 164/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R+ +Q+RE+ +TR  ++YAEGS LV+FG T +L TA+++  VP +++    GW+T
Sbjct: 1   MRIDQRELDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+Q GR+QEIQR+IGR+LR++VDL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRCDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D +  +   S K      LKG VAAIS GM     ++DL Y 
Sbjct: 121 ADGGTRTAAITGAAVALVDAMNVL--LSQKKIKHDPLKGLVAAISVGMYQDEVLLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS    D N VMT +G  +E+QG+AE   F++    AML +A+  IA+L+K Q++ +
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELVKKQQEAL 236


>gi|295095228|emb|CBK84318.1| ribonuclease PH [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 238

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 124/240 (51%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   + K + +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKLV-AAGKLK-TNPMKGMVAAVSVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALEN 238


>gi|303231308|ref|ZP_07318044.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514038|gb|EFL56044.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-049-V-Sch6]
          Length = 257

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 121/240 (50%), Positives = 162/240 (67%), Gaps = 4/240 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R   Q+R I +TR  ++YAEGS L++ G T ++ TAT+EE VP W++ +  GW+T
Sbjct: 1   MRSDNRTAGQLRPIKITRHFTEYAEGSVLIECGKTKVICTATIEENVPRWLKGSGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY +LPRST  RV REA  G+Q GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYSLLPRSTKTRVSREAARGKQTGRTVEIQRLIGRALRAVVDLKALGERSITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D +        KF ++       AAIS G+    PI DL Y 
Sbjct: 121 ADGGTRTASITGAFVALVDAIDFTFGGFGKFPITD----FCAAISVGIGPEGPITDLCYE 176

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N V T +G+++EVQG+ E  TFS+D    +L+LA+    +L+ +Q++V+ +
Sbjct: 177 EDSAAVVDMNVVRTGAGNLIEVQGTGEHGTFSRDELNQLLDLAESATDELMAVQRNVLGS 236


>gi|296100489|ref|YP_003610635.1| ribonuclease PH [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295054948|gb|ADF59686.1| ribonuclease PH [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 238

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 124/240 (51%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   + K + +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKLV-AAGKLK-TNPMKGMVAAVSVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVTTQKAALEN 238


>gi|157783152|ref|YP_001491547.1| defective ribonuclease PH [Escherichia coli str. K-12 substr.
           MG1655]
 gi|298351814|sp|P0CG19|RNPH_ECOLI RecName: Full=Inactive ribonuclease PH; Short=RNase PH; AltName:
           Full=tRNA nucleotidyltransferase
 gi|290493|gb|AAA61996.1| RNase PH [Escherichia coli]
 gi|157672248|gb|ABV59576.1| defective ribonuclease PH [Escherichia coli str. K-12 substr.
           MG1655]
          Length = 228

 Score =  239 bits (610), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 119/213 (55%), Positives = 152/213 (71%), Gaps = 2/213 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D LQ +    N    +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALQKL--VENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
           EDS  + D N VMT+ G I+EVQG+AE   F+ 
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTH 211


>gi|315635018|ref|ZP_07890299.1| tRNA nucleotidyltransferase [Aggregatibacter segnis ATCC 33393]
 gi|315476280|gb|EFU67031.1| tRNA nucleotidyltransferase [Aggregatibacter segnis ATCC 33393]
          Length = 238

 Score =  239 bits (610), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 121/239 (50%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q R I +TR  +K+AEGS LV+FGDT +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNQRANHQTRPIKITRHYTKHAEGSVLVEFGDTKVLCTATVEDGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCVTLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   +N       LKG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALCDALNGL--VANGTLSKNPLKGLVAAISVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK     + + Q+  ++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCEVIFQTQRAALA 237


>gi|238022211|ref|ZP_04602637.1| hypothetical protein GCWU000324_02118 [Kingella oralis ATCC 51147]
 gi|237866825|gb|EEP67867.1| hypothetical protein GCWU000324_02118 [Kingella oralis ATCC 51147]
          Length = 243

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 117/227 (51%), Positives = 163/227 (71%), Gaps = 2/227 (0%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
           + R  +Q+R +++T     +A+GS L+  G+T ++ TAT+++ VP ++R    GW+TAEY
Sbjct: 6   TARAAHQLRPVAITPNFLPHADGSVLMVCGNTKVICTATVDDNVPPFLRGKNQGWVTAEY 65

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           GMLP ST +R+KREA +G+Q GR+QEIQR+IGR+LR+ VDL+ LG RQI+IDCDVIQADG
Sbjct: 66  GMLPASTQSRMKREAAAGKQSGRTQEIQRLIGRSLRACVDLTLLGERQILIDCDVIQADG 125

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
           GTRTA+ITGA+VAL   +Q + D  N    +  L G VAA+S GM+ G P++DLDY EDS
Sbjct: 126 GTRTASITGAFVALQIAIQKLLD--NGTLPANPLIGSVAAVSAGMVNGVPLLDLDYPEDS 183

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
             D D N VM ++ +I+E+QG+AE A FS     A++ LA+  IA L
Sbjct: 184 GCDSDVNIVMLNAENIIEIQGTAEGAAFSVAELNALIALAQQGIAQL 230


>gi|312903655|ref|ZP_07762831.1| ribonuclease PH [Enterococcus faecalis TX0635]
 gi|310633008|gb|EFQ16291.1| ribonuclease PH [Enterococcus faecalis TX0635]
          Length = 451

 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   ++R+I++   V K+ EGS ++ FGDT ++ +AT+EEKVP ++R    GWI 
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWIA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I++DCDVIQ
Sbjct: 62  AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   + H+            +K H+AA+S G+L  GY ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  VE+QG+ E ATFS D   AML   K  I +LI  QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238


>gi|227552907|ref|ZP_03982956.1| tRNA nucleotidyltransferase [Enterococcus faecalis HH22]
 gi|227177961|gb|EEI58933.1| tRNA nucleotidyltransferase [Enterococcus faecalis HH22]
          Length = 316

 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   ++R+I++   V K+ EGS ++ FGDT ++ +AT+EEKVP ++R    GW+ 
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I++DCDVIQ
Sbjct: 62  AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   + H+            +K H+AA+S G+L  GY ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  VE+QG+ E ATFS D   AML   K  I +LI  QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238


>gi|312899597|ref|ZP_07758923.1| ribonuclease PH [Enterococcus faecalis TX0470]
 gi|311293276|gb|EFQ71832.1| ribonuclease PH [Enterococcus faecalis TX0470]
          Length = 451

 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   ++R+I++   V K+ EGS ++ FGDT ++ +AT+EEKVP ++R    GW+ 
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I++DCDVIQ
Sbjct: 62  AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   + H+            +K H+AA+S G+L  GY ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAINHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  VE+QG+ E ATFS D   AML   K  I +LI  QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238


>gi|113461435|ref|YP_719504.1| ribonuclease PH [Haemophilus somnus 129PT]
 gi|123132220|sp|Q0I4U1|RNPH_HAES1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|112823478|gb|ABI25567.1| RNAse PH [Haemophilus somnus 129PT]
          Length = 238

 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 120/235 (51%), Positives = 161/235 (68%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  NQ R I +TR  +K+AEGS LV+FG+T ++ TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNARAINQPRPIKITRHYTKHAEGSVLVEFGETKVICTATVEDSVPRFLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERAITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +    N    +  +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALIDAINFL--LKNGTLTTNPIKGLVAAISVGIVNGETVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  + D N VM + G ++EVQG+AE   FS      +L+LAK     L   Q+
Sbjct: 179 EDSIAETDMNVVMMEDGRMIEVQGTAEGEPFSHAELLTLLDLAKQGCEQLFVAQR 233


>gi|293569789|ref|ZP_06680876.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1071]
 gi|291587537|gb|EFF19414.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1071]
          Length = 451

 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 120/242 (49%), Positives = 163/242 (67%), Gaps = 3/242 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+  ++R++ L   V KY EGS +++FGDT ++ +AT+E+ VP ++R T  GW+T
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           A+Y MLPR+T  R +RE+  G+  GR+ EIQR+IGR+LR+VVDL  +G R II+DCDVIQ
Sbjct: 61  AKYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKIGERSIIVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   ++ +     K      +K H+AA+S G+L  G  + DLDY
Sbjct: 121 ADGGTRTASITGAFVALKLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N VMT+SG  VE+QG+ E ATF  +    ML   K+ I DLIK QK  + 
Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238

Query: 240 NE 241
            E
Sbjct: 239 TE 240


>gi|146309763|ref|YP_001174837.1| ribonuclease PH [Enterobacter sp. 638]
 gi|166991085|sp|A4W506|RNPH_ENT38 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145316639|gb|ABP58786.1| RNAse PH [Enterobacter sp. 638]
          Length = 238

 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 125/240 (52%), Positives = 163/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  NQ+R ++LTR  +K+AEGS LV FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPSGRSANQVRPVTLTRNYTKHAEGSVLVAFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKVLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   + K +    +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKL-IAAGKLK-KNPMKGMVAAVSVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  + N
Sbjct: 179 EDSVAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVTTQKAALQN 238


>gi|170718459|ref|YP_001783675.1| ribonuclease PH [Haemophilus somnus 2336]
 gi|189043765|sp|B0UWM2|RNPH_HAES2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|168826588|gb|ACA31959.1| ribonuclease PH [Haemophilus somnus 2336]
          Length = 238

 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 120/235 (51%), Positives = 161/235 (68%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  NQ R I +TR  +K+AEGS LV+FG+T ++ TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNARAINQPRPIKITRHYTKHAEGSVLVEFGETKVICTATVEDSVPRFLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERAITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +    N    +  +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALIDAINFL--LQNGTLTTNPIKGLVAAISVGIVNGETVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  + D N VM + G ++EVQG+AE   FS      +L+LAK     L   Q+
Sbjct: 179 EDSIAETDMNVVMMEDGRMIEVQGTAEGEPFSHAELLTLLDLAKQGCEQLFVAQR 233


>gi|237654670|ref|YP_002890984.1| ribonuclease PH [Thauera sp. MZ1T]
 gi|237625917|gb|ACR02607.1| ribonuclease PH [Thauera sp. MZ1T]
          Length = 243

 Score =  239 bits (609), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 127/242 (52%), Positives = 171/242 (70%), Gaps = 2/242 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S RQ +Q+R + LTR  + +AEGS LV+FG T +L TA++EE VP ++R    GW+T
Sbjct: 1   MRPSLRQPDQLRAVRLTRGFTCHAEGSVLVEFGATRVLCTASVEETVPGFLRGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI++DCDV+Q
Sbjct: 61  AEYGMLPRATHTRSAREAAKGKQSGRTQEIQRLIGRSLRAVVDLGALGERQIVVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VA+HD L  +   + K   +  ++  VAA+S G+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGACVAVHDALVGLV-AAGKLAHNP-MREFVAAVSVGIHQGVPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++EVQG+AE   FS+    A+L+LA+     L +LQ+  + +
Sbjct: 179 EDSDCDTDMNVVMTEGGGLIEVQGTAEGTPFSRAELDALLDLAELGGRQLFELQRGAVRS 238

Query: 241 EV 242
            +
Sbjct: 239 AI 240


>gi|95929460|ref|ZP_01312203.1| ribonuclease PH [Desulfuromonas acetoxidans DSM 684]
 gi|95134576|gb|EAT16232.1| ribonuclease PH [Desulfuromonas acetoxidans DSM 684]
          Length = 240

 Score =  238 bits (608), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 121/235 (51%), Positives = 159/235 (67%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   RQ +Q+R ++  R  ++YAEGS LV FGDT +L  AT+EE VP ++R    GW+T
Sbjct: 3   IRADQRQPDQLRPVTFQRGYTRYAEGSVLVSFGDTVVLCNATVEESVPPFMRGEGRGWVT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  REA  G+ GGR+ EIQR+IGRALR+V+D  ALG R I +DCDV+Q
Sbjct: 63  AEYAMLPRATHSRNSREAARGKVGGRTHEIQRLIGRALRAVIDFDALGERTIRLDCDVLQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL + +  +    +       LK  +AAIS G++ G P++DL+YG
Sbjct: 123 ADGGTRTASITGAYVALAEAVNGL--LRDGVLTVSPLKDSLAAISVGIVDGQPLLDLNYG 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  DVD N VMT SG  VEVQG+AE   F+     AM  LA    A+L  +Q+
Sbjct: 181 EDSKADVDMNIVMTGSGAFVEVQGTAEAEPFTAQQLDAMRALAMKGCAELAGMQR 235


>gi|119773461|ref|YP_926201.1| ribonuclease PH [Shewanella amazonensis SB2B]
 gi|166228315|sp|A1S2C5|RNPH_SHEAM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|119765961|gb|ABL98531.1| RNAse PH [Shewanella amazonensis SB2B]
          Length = 237

 Score =  238 bits (608), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 123/239 (51%), Positives = 159/239 (66%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R   Q R IS+TR  + +AEGS LV+FG+T +L TA+  E VP +++ +  GW+T
Sbjct: 1   MRPGNRTPAQTRPISITRNFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGSGQGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+Q GR+QEIQR+IGRALR+ VDL  LG   I++DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRAAVDLKQLGENTIVVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D L            +  LK  +AA+S G+  G  I DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGLVKANPLKFLIAAVSVGIHNGEAICDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G I+EVQG+AE   F+ +    ML LAK  I ++I  QK  ++
Sbjct: 179 EDSAAETDMNVVMTETGKIIEVQGTAEGEPFTHEELLTMLELAKHGIREIIDTQKAALN 237


>gi|229546199|ref|ZP_04434924.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX1322]
 gi|229550384|ref|ZP_04439109.1| tRNA nucleotidyltransferase [Enterococcus faecalis ATCC 29200]
 gi|255973155|ref|ZP_05423741.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T1]
 gi|255976198|ref|ZP_05426784.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T2]
 gi|256762130|ref|ZP_05502710.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T3]
 gi|256852772|ref|ZP_05558142.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T8]
 gi|256958619|ref|ZP_05562790.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis DS5]
 gi|256965477|ref|ZP_05569648.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis HIP11704]
 gi|257078027|ref|ZP_05572388.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis JH1]
 gi|257082915|ref|ZP_05577276.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis E1Sol]
 gi|257086477|ref|ZP_05580838.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis D6]
 gi|257415736|ref|ZP_05592730.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis AR01/DG]
 gi|257422961|ref|ZP_05599951.1| ribonuclease PH [Enterococcus faecalis X98]
 gi|294780993|ref|ZP_06746345.1| tRNA nucleotidyltransferase [Enterococcus faecalis PC1.1]
 gi|300860046|ref|ZP_07106134.1| tRNA nucleotidyltransferase [Enterococcus faecalis TUSoD Ef11]
 gi|307273813|ref|ZP_07555035.1| ribonuclease PH [Enterococcus faecalis TX0855]
 gi|307274576|ref|ZP_07555756.1| ribonuclease PH [Enterococcus faecalis TX2134]
 gi|307278842|ref|ZP_07559905.1| ribonuclease PH [Enterococcus faecalis TX0860]
 gi|307288573|ref|ZP_07568557.1| ribonuclease PH [Enterococcus faecalis TX0109]
 gi|307291105|ref|ZP_07570990.1| ribonuclease PH [Enterococcus faecalis TX0411]
 gi|312951374|ref|ZP_07770272.1| ribonuclease PH [Enterococcus faecalis TX0102]
 gi|229304506|gb|EEN70502.1| tRNA nucleotidyltransferase [Enterococcus faecalis ATCC 29200]
 gi|229308723|gb|EEN74710.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX1322]
 gi|255964173|gb|EET96649.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T1]
 gi|255969070|gb|EET99692.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T2]
 gi|256683381|gb|EEU23076.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T3]
 gi|256711231|gb|EEU26269.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T8]
 gi|256949115|gb|EEU65747.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis DS5]
 gi|256955973|gb|EEU72605.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis HIP11704]
 gi|256986057|gb|EEU73359.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis JH1]
 gi|256990945|gb|EEU78247.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis E1Sol]
 gi|256994507|gb|EEU81809.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis D6]
 gi|257157564|gb|EEU87524.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis ARO1/DG]
 gi|257164785|gb|EEU94745.1| ribonuclease PH [Enterococcus faecalis X98]
 gi|294451939|gb|EFG20389.1| tRNA nucleotidyltransferase [Enterococcus faecalis PC1.1]
 gi|300850864|gb|EFK78613.1| tRNA nucleotidyltransferase [Enterococcus faecalis TUSoD Ef11]
 gi|306497759|gb|EFM67291.1| ribonuclease PH [Enterococcus faecalis TX0411]
 gi|306500480|gb|EFM69813.1| ribonuclease PH [Enterococcus faecalis TX0109]
 gi|306504513|gb|EFM73720.1| ribonuclease PH [Enterococcus faecalis TX0860]
 gi|306508728|gb|EFM77818.1| ribonuclease PH [Enterococcus faecalis TX2134]
 gi|306509498|gb|EFM78546.1| ribonuclease PH [Enterococcus faecalis TX0855]
 gi|310630634|gb|EFQ13917.1| ribonuclease PH [Enterococcus faecalis TX0102]
 gi|315028079|gb|EFT40011.1| ribonuclease PH [Enterococcus faecalis TX2137]
 gi|315030712|gb|EFT42644.1| ribonuclease PH [Enterococcus faecalis TX4000]
 gi|315031600|gb|EFT43532.1| ribonuclease PH [Enterococcus faecalis TX0017]
 gi|315034958|gb|EFT46890.1| ribonuclease PH [Enterococcus faecalis TX0027]
 gi|315148459|gb|EFT92475.1| ribonuclease PH [Enterococcus faecalis TX4244]
 gi|315156537|gb|EFU00554.1| ribonuclease PH [Enterococcus faecalis TX0043]
 gi|315158363|gb|EFU02380.1| ribonuclease PH [Enterococcus faecalis TX0312]
 gi|315165533|gb|EFU09550.1| ribonuclease PH [Enterococcus faecalis TX1302]
 gi|315168390|gb|EFU12407.1| ribonuclease PH [Enterococcus faecalis TX1341]
 gi|323480361|gb|ADX79800.1| ribonuclease PH [Enterococcus faecalis 62]
 gi|329576387|gb|EGG57900.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX1467]
          Length = 451

 Score =  238 bits (608), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   ++R+I++   V K+ EGS ++ FGDT ++ +AT+EEKVP ++R    GW+ 
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I++DCDVIQ
Sbjct: 62  AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   + H+            +K H+AA+S G+L  GY ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  VE+QG+ E ATFS D   AML   K  I +LI  QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238


>gi|206603687|gb|EDZ40167.1| Ribonuclease PH [Leptospirillum sp. Group II '5-way CG']
          Length = 245

 Score =  238 bits (608), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 162/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+   +R +S+   V+ YAEGS LV+ G+T +L TA++EEKVP ++++   GW+T
Sbjct: 2   MRSDGRKPENLRSLSIKTGVNLYAEGSVLVEMGNTKVLCTASVEEKVPPFLKDQGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LRSVVD   +G R I IDCDV+Q
Sbjct: 62  AEYGMLPRSTHERNSREAAKGKQSGRTQEIQRLIGRSLRSVVDTKKMGVRTITIDCDVLQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+G +VA+  CL   E           ++ ++AA+S G++ G P++DL Y 
Sbjct: 122 ADGGTRTASISGGFVAM--CLAFSELHKRGLMPEWPVREYLAAVSVGVVEGLPVLDLCYT 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT+SGH VE+QG+AE   FS+     +L L +  I ++I  QK V S
Sbjct: 180 EDSGAETDMNLVMTESGHFVEIQGTAEETPFSRQTLDTLLGLGEKGIREIIACQKSVFS 238


>gi|307268764|ref|ZP_07550132.1| ribonuclease PH [Enterococcus faecalis TX4248]
 gi|306514892|gb|EFM83439.1| ribonuclease PH [Enterococcus faecalis TX4248]
          Length = 451

 Score =  238 bits (608), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   ++R+I++   V K+ EGS ++ FGDT ++ +AT+EEKVP ++R    GW+ 
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I++DCDVIQ
Sbjct: 62  AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   + H+            +K H+AA+S G+L  GY ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  VE+QG+ E ATFS D   AML   K  I +LI  QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238


>gi|260599940|ref|YP_003212511.1| ribonuclease PH [Cronobacter turicensis z3032]
 gi|260219117|emb|CBA34472.1| Ribonuclease PH [Cronobacter turicensis z3032]
          Length = 240

 Score =  238 bits (608), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 124/240 (51%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  +++R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 3   MRPAGRSASEVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDVIQ
Sbjct: 63  AEYGMLPRATHTRNAREAAKGKQGGRTLEIQRLIARALRAAVDLKALGEFTITLDCDVIQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   + K + +  LKG VAA+S G++ G  + DL+Y 
Sbjct: 123 ADGGTRTASITGACVALADALNALV-AAGKLK-TNPLKGMVAAVSVGIVNGEAVCDLEYV 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 181 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHEELLDLLALARGGIESIVASQKAALAN 240


>gi|291086420|ref|ZP_06355763.2| tRNA nucleotidyltransferase [Citrobacter youngae ATCC 29220]
 gi|291068205|gb|EFE06314.1| tRNA nucleotidyltransferase [Citrobacter youngae ATCC 29220]
          Length = 273

 Score =  238 bits (608), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 125/240 (52%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA+++E VP +++    GWIT
Sbjct: 36  MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWIT 95

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDVIQ
Sbjct: 96  AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 155

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   S K + +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 156 ADGGTRTASITGACVALADALNKLV-ASGKLK-TNPMKGMVAAVSVGIVNGEALCDLEYV 213

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   FS +    +L LA+  I  ++  QK  + N
Sbjct: 214 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 273


>gi|256618706|ref|ZP_05475552.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis ATCC 4200]
 gi|257089534|ref|ZP_05583895.1| ribonuclease PH [Enterococcus faecalis CH188]
 gi|256598233|gb|EEU17409.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis ATCC 4200]
 gi|256998346|gb|EEU84866.1| ribonuclease PH [Enterococcus faecalis CH188]
 gi|315577483|gb|EFU89674.1| ribonuclease PH [Enterococcus faecalis TX0630]
          Length = 451

 Score =  238 bits (608), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   ++R+I++   V K+ EGS ++ FGDT ++ +AT+EEKVP ++R    GW+ 
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I++DCDVIQ
Sbjct: 62  AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   + H+            +K H+AA+S G+L  GY ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  VE+QG+ E ATFS D   AML   K  I +LI  QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238


>gi|237806963|ref|YP_002891403.1| ribonuclease PH [Tolumonas auensis DSM 9187]
 gi|259494130|sp|C4L818|RNPH_TOLAT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|237499224|gb|ACQ91817.1| ribonuclease PH [Tolumonas auensis DSM 9187]
          Length = 237

 Score =  238 bits (608), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 157/224 (70%), Gaps = 2/224 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q+R I++TR+ + +AEGS LV+FG T +L TAT+ E VP +++    GW+T
Sbjct: 1   MRPSGRTPEQLRPITITRQYTCHAEGSVLVEFGRTKVLCTATVTEGVPRFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA SG+QGGR+ EIQR+I R+LR+ VDL+ LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRMHREAASGKQGGRTLEIQRLIARSLRAAVDLTKLGENTITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  M   +     +  L   VAA+S G+  G P+ DLDY 
Sbjct: 121 ADGGTRTASITGACVALADALNWM--LAKGSLKTNPLNFMVAAVSVGIYEGAPVCDLDYD 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           EDS+ + D N VMT++G ++E+QG+AE   FSQ+    +L L K
Sbjct: 179 EDSSAETDMNLVMTETGKMIEIQGTAEGEPFSQEELMQLLELGK 222


>gi|315153645|gb|EFT97661.1| ribonuclease PH [Enterococcus faecalis TX0031]
          Length = 451

 Score =  238 bits (607), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   ++R+I++   V K+ EGS ++ FGDT ++ +AT+EEKVP ++R    GW+ 
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I++DCDVIQ
Sbjct: 62  AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   + H+            +K H+AA+S G+L  GY ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LITGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  VE+QG+ E ATFS D   AML   K  I +LI  QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238


>gi|194367042|ref|YP_002029652.1| ribonuclease PH [Stenotrophomonas maltophilia R551-3]
 gi|226736943|sp|B4SU06|RNPH_STRM5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|194349846|gb|ACF52969.1| ribonuclease PH [Stenotrophomonas maltophilia R551-3]
          Length = 241

 Score =  238 bits (607), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 120/238 (50%), Positives = 165/238 (69%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGRQ +Q+R + + R  +++AEGS LV FG+T +L TA++E +VP ++R    GW+TA
Sbjct: 5   RPSGRQPDQLRPVVIQRGFTRHAEGSVLVCFGETRVLCTASVENRVPGFLRGKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+QGGR+ EIQR+IGR+LR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRATHTRSDREAARGKQGGRTLEIQRLIGRSLRACVDRNALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +       + + +L G VAA+S G+  G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALVDAVNVLMK-RGDIKRNPIL-GAVAAVSVGVYRGTPVLDLDYAE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  + +L+  Q+  +S
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLGLAEKGVRELLDAQQAALS 240


>gi|499181|emb|CAA25357.1| unnamed protein product [Escherichia coli]
          Length = 238

 Score =  238 bits (607), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 124/240 (51%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD  TRTA+ITGA VAL D LQ +    N    +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADAWTRTASITGACVALVDALQKL--VENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGGIESIVATQKAALAN 238


>gi|332527984|ref|ZP_08404018.1| tRNA nucleotidyltransferase [Rubrivivax benzoatilyticus JA2]
 gi|332112558|gb|EGJ12351.1| tRNA nucleotidyltransferase [Rubrivivax benzoatilyticus JA2]
          Length = 241

 Score =  238 bits (607), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 123/229 (53%), Positives = 160/229 (69%), Gaps = 2/229 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R SGR  + +R +++TR  +K+AEGS LV FGDT +L TA++EEKVP   R +  GW+T
Sbjct: 4   VRSSGRAHDALRPVTITRHYTKHAEGSVLVCFGDTQVLCTASVEEKVPPHKRGSGEGWVT 63

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V DL ALG R I+IDCDV+Q
Sbjct: 64  AEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRTVFDLGALGERSILIDCDVLQ 123

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VA  D +  +     K   S + +  VAAIS G++ G P++DL+Y 
Sbjct: 124 ADGGTRTAAITGAFVAAQDAVNWLL-AQGKIAASPI-RDQVAAISVGIVQGTPLLDLEYI 181

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
           EDS  D D N VMT SG  VE+QG+AE   F++    A+L LA   I +
Sbjct: 182 EDSACDTDMNVVMTGSGGFVEIQGTAEGVPFTRAEMDALLALAGKGIGE 230


>gi|332798597|ref|YP_004460096.1| Ribonuclease PH [Tepidanaerobacter sp. Re1]
 gi|332696332|gb|AEE90789.1| Ribonuclease PH [Tepidanaerobacter sp. Re1]
          Length = 238

 Score =  238 bits (607), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 122/237 (51%), Positives = 170/237 (71%), Gaps = 4/237 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +++R I++TR  +KYAEGS L++ GDT ++ TAT++EKVP ++R    GWITA
Sbjct: 3   RVDGRANDEIRPITITRNFNKYAEGSVLIEAGDTKVVCTATVDEKVPPFLRGKGQGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE +  R  GR+ EIQR+IGRALRSVVDLSALG R I +DCDVIQA
Sbjct: 63  EYSMLPRATEVRNIRETL--RPSGRTMEIQRLIGRALRSVVDLSALGERTIWLDCDVIQA 120

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA++AL D ++ ++D  NK   +  +K +VAAIS G++ G  ++DL + E
Sbjct: 121 DGGTRTASITGAFIALGDAIRTLKD--NKEIETNPIKSYVAAISAGIVDGEKMLDLRFEE 178

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS   VD N VMTD G IVE+QG+ E   F++     +++LA   I++L+ +QK ++
Sbjct: 179 DSRAQVDMNLVMTDEGQIVEIQGTGEAFPFTRQDMNDLIDLAFKGISELVCIQKKLL 235


>gi|315170973|gb|EFU14990.1| ribonuclease PH [Enterococcus faecalis TX1342]
          Length = 451

 Score =  238 bits (607), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   ++R+I++   V K+ EGS ++ FGDT ++ +AT+EEKVP ++R    GW+ 
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I++DCDVIQ
Sbjct: 62  AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   + H+            +K H+AA+S G+L  GY ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAINHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  VE+QG+ E ATFS D   AML   K  I +LI  QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELITYQKEAL 238


>gi|313894107|ref|ZP_07827673.1| tRNA nucleotidyltransferase [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313441671|gb|EFR60097.1| tRNA nucleotidyltransferase [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 251

 Score =  238 bits (607), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 122/240 (50%), Positives = 161/240 (67%), Gaps = 4/240 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R   Q+R I +TR  ++YAEGS L++ G T ++ TAT+E+ VP W++ +  GW+T
Sbjct: 1   MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATVEDSVPRWLKGSGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY +LPRST  RV REA  G+Q GR+ EIQR+IGRALR+VVDL ALG R I IDCDVIQ
Sbjct: 61  AEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D +      + KF ++       AAIS G+    PI DL Y 
Sbjct: 121 ADGGTRTASITGAFVALVDAVDFTFGGAGKFPITD----FCAAISVGIGPEGPITDLCYE 176

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N V T SG +VEVQG+ E  TF++D   A+L+LA+    +L+  Q++ + +
Sbjct: 177 EDSAAIVDMNVVRTGSGDMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQREALGS 236


>gi|302391286|ref|YP_003827106.1| RNAse PH [Acetohalobium arabaticum DSM 5501]
 gi|302203363|gb|ADL12041.1| RNAse PH [Acetohalobium arabaticum DSM 5501]
          Length = 251

 Score =  238 bits (607), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 114/241 (47%), Positives = 166/241 (68%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR  +++RE+++TR  +KYAEGS L+  GDT ++  A++EE VP ++R+   GWIT
Sbjct: 1   MRVDGRDRDELREVTITRDFTKYAEGSILISTGDTKVICNASVEESVPYFLRDQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            EY MLPR+T +R  R A  G+  GR++EIQR+IGRA+RSV+DL  LG R I +DCDVIQ
Sbjct: 61  GEYAMLPRATESRNIRAAAKGKISGRTKEIQRLIGRAMRSVIDLDKLGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D L ++ +     ++   +K  +AA S G++ G P +DL Y 
Sbjct: 121 ADGGTRTASITGAFVALIDALDYLLEKDKIDEMP--VKSFIAATSVGIIDGAPALDLCYK 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS+  VD N VMT+ G I+E+QG+ E   F+Q     ++ L +  I +LI+ QK+ + +
Sbjct: 179 EDSSAQVDLNLVMTEEGRIIEIQGTGEENPFTQQELDKLVELGEKGIKELIRYQKEALGD 238

Query: 241 E 241
           +
Sbjct: 239 K 239


>gi|292486561|ref|YP_003529429.1| ribonuclease PH [Erwinia amylovora CFBP1430]
 gi|292897799|ref|YP_003537168.1| ribonuclease PH [Erwinia amylovora ATCC 49946]
 gi|291197647|emb|CBJ44742.1| ribonuclease PH [Erwinia amylovora ATCC 49946]
 gi|291551976|emb|CBA19013.1| ribonuclease PH [Erwinia amylovora CFBP1430]
 gi|312170622|emb|CBX78885.1| ribonuclease PH [Erwinia amylovora ATCC BAA-2158]
          Length = 238

 Score =  238 bits (606), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 124/240 (51%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GW+T
Sbjct: 1   MRPSGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATIEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ +DL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L H+     K + +  +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNHLVFI-GKLK-ANPMKGMVAAISVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G ++EVQG+AE   FS +    +L LA+  I  L+  QK  +++
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLKLLELARGGIDTLVAAQKAALTH 238


>gi|258541167|ref|YP_003186600.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-01]
 gi|256632245|dbj|BAH98220.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-01]
 gi|256635302|dbj|BAI01271.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-03]
 gi|256638357|dbj|BAI04319.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-07]
 gi|256641411|dbj|BAI07366.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-22]
 gi|256644466|dbj|BAI10414.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-26]
 gi|256647521|dbj|BAI13462.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-32]
 gi|256650574|dbj|BAI16508.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653565|dbj|BAI19492.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-12]
          Length = 244

 Score =  238 bits (606), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 117/234 (50%), Positives = 159/234 (67%), Gaps = 2/234 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ +QMR I++    + +AEGS L++ G T +L TA++E +VP ++R    GW+T
Sbjct: 1   MRPSGRQPDQMRPITIETGFAHHAEGSALIRVGGTEVLCTASIENRVPPFLRGKGTGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V DL ALG   I +DCDV+ 
Sbjct: 61  AEYGMLPRATHTRGNREAAKGKQSGRTQEIQRLIGRSLRAVTDLDALGEMSITLDCDVLN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITGAWVAL   L  +   +   +L   L+G VAA+SCG+     ++DLDY 
Sbjct: 121 ADGGTRCASITGAWVALRLALGKLVATNVLPRLP--LRGQVAAVSCGLTTEGAVLDLDYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           EDS+   D NFV+T    IVE+QG+AE A F++D F  +  LA+  + +L + Q
Sbjct: 179 EDSSASADTNFVLTADRRIVEIQGTAESAPFTEDAFDNLFALARKGVTELFEAQ 232


>gi|315144635|gb|EFT88651.1| ribonuclease PH [Enterococcus faecalis TX2141]
 gi|315160934|gb|EFU04951.1| ribonuclease PH [Enterococcus faecalis TX0645]
          Length = 451

 Score =  238 bits (606), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   ++R+I++   V K+ EGS ++ FGDT ++ +AT+EEKVP ++R    GW+ 
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I++DCDVIQ
Sbjct: 62  AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   + H+            +K H+AA+S G+L  GY ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  VE+QG+ E ATFS D   AML   K  I +LI  QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELITYQKEAL 238


>gi|294637890|ref|ZP_06716159.1| tRNA nucleotidyltransferase [Edwardsiella tarda ATCC 23685]
 gi|291088916|gb|EFE21477.1| tRNA nucleotidyltransferase [Edwardsiella tarda ATCC 23685]
          Length = 237

 Score =  238 bits (606), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 125/239 (52%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR   Q+R + LTR  +K+AEGS LV+FGDT +L TA+++E VP +++    GW+T
Sbjct: 1   MRPEGRAAGQIRPLRLTRHYTKHAEGSVLVEFGDTKVLCTASVDEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMAREAAKGKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   S K + S  LKG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNALV-ASGKLKASP-LKGMVAAVSVGIVAGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G ++EVQG+AE   FS +    +L LAKD I  +I+ QK  ++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALAKDGIGQIIQAQKAALA 237


>gi|29375698|ref|NP_814852.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis V583]
 gi|256962282|ref|ZP_05566453.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Merz96]
 gi|257418951|ref|ZP_05595945.1| ribonuclease PH/Ham1 [Enterococcus faecalis T11]
 gi|293383311|ref|ZP_06629226.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis R712]
 gi|293387532|ref|ZP_06632081.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis S613]
 gi|312905818|ref|ZP_07764838.1| ribonuclease PH [Enterococcus faecalis DAPTO 512]
 gi|312909127|ref|ZP_07767986.1| ribonuclease PH [Enterococcus faecalis DAPTO 516]
 gi|29343159|gb|AAO80922.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis V583]
 gi|256952778|gb|EEU69410.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Merz96]
 gi|257160779|gb|EEU90739.1| ribonuclease PH/Ham1 [Enterococcus faecalis T11]
 gi|291079334|gb|EFE16698.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis R712]
 gi|291083042|gb|EFE20005.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis S613]
 gi|310628157|gb|EFQ11440.1| ribonuclease PH [Enterococcus faecalis DAPTO 512]
 gi|311290551|gb|EFQ69107.1| ribonuclease PH [Enterococcus faecalis DAPTO 516]
 gi|315174641|gb|EFU18658.1| ribonuclease PH [Enterococcus faecalis TX1346]
 gi|315573714|gb|EFU85905.1| ribonuclease PH [Enterococcus faecalis TX0309B]
 gi|315582671|gb|EFU94862.1| ribonuclease PH [Enterococcus faecalis TX0309A]
 gi|327534753|gb|AEA93587.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis OG1RF]
          Length = 451

 Score =  238 bits (606), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   ++R+I++   V K+ EGS ++ FGDT ++ +AT+EEKVP ++R    GW+ 
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I++DCDVIQ
Sbjct: 62  AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   + H+            +K H+AA+S G+L  GY ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  VE+QG+ E ATFS D   AML   K  I +LI  QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238


>gi|188532222|ref|YP_001906019.1| ribonuclease PH [Erwinia tasmaniensis Et1/99]
 gi|226736908|sp|B2VF76|RNPH_ERWT9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|188027264|emb|CAO95107.1| Ribonuclease PH (tRNA nucleotidyltransferase) [Erwinia tasmaniensis
           Et1/99]
          Length = 238

 Score =  238 bits (606), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 122/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GW+T
Sbjct: 1   MRPSGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATIEEGVPRFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ +DL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L H+   S     +  +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNHL--VSTGKLKANPMKGMVAAISVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED+  + D N VMT+ G ++EVQG+AE   FS +    +L LA+  I  L+  QK  +++
Sbjct: 179 EDAAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLKLLELARGGIDTLVAAQKAALTD 238


>gi|257085617|ref|ZP_05579978.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Fly1]
 gi|256993647|gb|EEU80949.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Fly1]
          Length = 451

 Score =  238 bits (606), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   ++R+I++   V K+ EGS ++ FGDT ++ +AT+EEKVP ++R    GW+ 
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I++DCDVIQ
Sbjct: 62  AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   + H+            +K H+AA+S G+L  GY ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  VE+QG+ E ATFS D   AML   K  I +LI  QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238


>gi|124515183|gb|EAY56694.1| ribonuclease PH [Leptospirillum rubarum]
          Length = 245

 Score =  237 bits (605), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 162/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+   +R +S+   V+ YAEGS LV+ G+T +L TA++EEKVP ++++   GW+T
Sbjct: 2   MRSDGRKPENLRSLSIKTGVNLYAEGSVLVEMGNTKVLCTASVEEKVPPFLKDQGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LRSVVD   +G R I IDCDV+Q
Sbjct: 62  AEYGMLPRSTHERNSREAAKGKQSGRTQEIQRLIGRSLRSVVDTKKMGVRTITIDCDVLQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+G +VA+  CL   E           ++ ++AA+S G++ G P++DL Y 
Sbjct: 122 ADGGTRTASISGGFVAM--CLAFSELHKRGLMPEWPVREYLAAVSVGVVEGEPVLDLCYT 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT+SGH VE+QG+AE   FS+     +L L +  I ++I  QK V S
Sbjct: 180 EDSGAETDMNLVMTESGHFVEIQGTAEETPFSRQTLDTLLGLGEKGIREIIVCQKSVFS 238


>gi|150388786|ref|YP_001318835.1| ribonuclease PH [Alkaliphilus metalliredigens QYMF]
 gi|149948648|gb|ABR47176.1| ribonuclease PH [Alkaliphilus metalliredigens QYMF]
          Length = 255

 Score =  237 bits (605), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 116/237 (48%), Positives = 166/237 (70%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +++R +  T+  +K+A+GS LV+ G+T ++ TA +EE+VP +++N+  GW+TA
Sbjct: 3   RVDGRKFDELRPVKFTKNYTKHAQGSVLVEMGETKVICTAMVEERVPHFLKNSGKGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R  RE+  G+  GR+QEIQR+IGRALRSV+DL ALG R I IDCDVIQA
Sbjct: 63  EYSMLPSSTNTRKIRESSRGKIEGRTQEIQRLIGRALRSVIDLEALGERTIWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA++AL + +  +++      +   +K +V+AIS G++   P++DL Y E
Sbjct: 123 DGGTRTASITGAFIALVEAINSVKEAKKITYIP--IKNYVSAISVGIVNDQPVLDLCYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS   VD N VMTD    +EVQG+ E A FS+D    +L L ++  A LI LQK+V+
Sbjct: 181 DSKAMVDMNIVMTDMKEFIEVQGTGEEAPFSRDSLMELLRLGEEGNAQLIALQKEVL 237


>gi|270157357|ref|ZP_06186014.1| ribonuclease PH [Legionella longbeachae D-4968]
 gi|289164250|ref|YP_003454388.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Legionella longbeachae NSW150]
 gi|269989382|gb|EEZ95636.1| ribonuclease PH [Legionella longbeachae D-4968]
 gi|288857423|emb|CBJ11251.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Legionella longbeachae NSW150]
          Length = 235

 Score =  237 bits (605), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 117/235 (49%), Positives = 161/235 (68%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R+ NQ+R I LTR  +K+AEGS LV+FG T +L  A++ E VP +I+    GW+T
Sbjct: 1   MRPSNREANQLRPIQLTRNYTKHAEGSVLVEFGQTKVLCNASVTEGVPRFIKGKNQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+QGGR+ EIQR+IGR+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTEREASKGKQGGRTMEIQRLIGRSLRACVDLKFLGENTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG+ VA+ D +  M +     ++      ++AA+S G+  G  ++DLDY 
Sbjct: 121 ADGGTRTAAITGSCVAMRDAISWMVEREKIRRMPAF--NYIAAVSVGLYRGQAVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           ED   + D N VM ++GH +E+QG+AE   F+++    ML LA+  I  LI++QK
Sbjct: 179 EDVLAETDMNVVMNEAGHFIEIQGTAEDRHFNREELNNMLALAEIGIPQLIEIQK 233


>gi|332529685|ref|ZP_08405639.1| ribonuclease ph [Hylemonella gracilis ATCC 19624]
 gi|332040706|gb|EGI77078.1| ribonuclease ph [Hylemonella gracilis ATCC 19624]
          Length = 254

 Score =  237 bits (605), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 121/243 (49%), Positives = 164/243 (67%), Gaps = 6/243 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R  +Q+R + +TR  + +AEGS L++FG T +L TA++EE+VP   + +  GW+T
Sbjct: 13  LRADQRAADQLRAVRITRHYTVHAEGSVLIEFGRTRVLCTASVEERVPPHKKGSGEGWVT 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR+V DL ALG R I +DCDV+Q
Sbjct: 73  AEYGMLPRSTHTRSDREAARGKQNGRTQEIQRLIGRSLRAVFDLKALGERTITLDCDVLQ 132

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVA  D +  +     K   S ++   VAA+S G++ G  ++DL+Y 
Sbjct: 133 ADGGTRTAAITGAWVAAQDAVNTL-IAQGKLTTSPII-APVAAVSVGIVEGQALLDLEYT 190

Query: 181 EDSTIDVDANFVMT----DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           EDS  D D N VMT      GH +EVQG+AE A FS+    A+L LA+  I +L+ LQ+ 
Sbjct: 191 EDSACDTDMNVVMTVNAAGEGHYIEVQGTAEGAAFSRKEMDALLALAEKGIHELVALQRQ 250

Query: 237 VIS 239
            ++
Sbjct: 251 ALA 253


>gi|302560437|ref|ZP_07312779.1| ribonuclease PH [Streptomyces griseoflavus Tu4000]
 gi|302478055|gb|EFL41148.1| ribonuclease PH [Streptomyces griseoflavus Tu4000]
          Length = 245

 Score =  237 bits (605), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 118/237 (49%), Positives = 159/237 (67%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R +S+ R  SK+AEGS LV FGDT +L TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTKVLCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+V+D  ALG   +++DCDV+QA
Sbjct: 63  EYAMLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +Q  +D        + L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVQWAQDKKLVRAGRRPLTGTVSAVSVGIVGGVPLLDLRYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   D D N V T  G  VEVQG+AE   F++D   A+L+LA    A+L   Q+  +
Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVTGCAELAAAQRKAL 239


>gi|304399022|ref|ZP_07380891.1| ribonuclease PH [Pantoea sp. aB]
 gi|308188661|ref|YP_003932792.1| ribonuclease PH [Pantoea vagans C9-1]
 gi|304353482|gb|EFM17860.1| ribonuclease PH [Pantoea sp. aB]
 gi|308059171|gb|ADO11343.1| ribonuclease PH [Pantoea vagans C9-1]
          Length = 238

 Score =  237 bits (605), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 124/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++LTR  +K+AEGS LV+FG+T +L TA+++E VP +++    GW+T
Sbjct: 1   MRPAGRSAQQVRPVTLTRNYTKHAEGSVLVEFGETKVLCTASVDEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+I R+LR+ VDL ALG   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMAREAAKGKQGGRTLEIQRLIARSLRAAVDLKALGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   S K + +  +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKLV-ASGKLK-ANPMKGMVAAISVGIVKGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +    +L LA+  I +LI+ QK  + N
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARGGIEELIQAQKAALEN 238


>gi|304413132|ref|ZP_07394605.1| ribonuclease PH [Candidatus Regiella insecticola LSR1]
 gi|304283975|gb|EFL92368.1| ribonuclease PH [Candidatus Regiella insecticola LSR1]
          Length = 242

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 161/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MRL+GR   Q+R ++LTR  +KYAEGS LV+FGDT +L TAT+EE +P +++    GWIT
Sbjct: 1   MRLAGRAAEQVRPLTLTRHYTKYAEGSVLVEFGDTKVLCTATIEEGIPRFLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I IDCDV+Q
Sbjct: 61  AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLQQLGEHTITIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+GA VAL D L+  +    K      ++G VAAIS G++    + DL+Y 
Sbjct: 121 ADGGTRTAAISGASVALADALE--KAVIKKKLKKNPMRGLVAAISVGIVKNEALGDLEYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  + D N VM +   ++EVQG+AE   FS +    +L LA+  I  + + QK  ++
Sbjct: 179 EDANAETDMNVVMMEDYQMIEVQGTAEGKPFSHEQLLTLLALARGGIGTIFQAQKAALA 237


>gi|329114777|ref|ZP_08243534.1| Ribonuclease PH [Acetobacter pomorum DM001]
 gi|326695908|gb|EGE47592.1| Ribonuclease PH [Acetobacter pomorum DM001]
          Length = 267

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 117/234 (50%), Positives = 160/234 (68%), Gaps = 2/234 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ +QMR I++    + +AEGS L++ G T +L TA++E +VP ++R    GW+T
Sbjct: 24  MRPSGRQPDQMRPITIETGFAHHAEGSALIRVGGTEVLCTASIENRVPPFLRGKGTGWVT 83

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V DL+ALG   I +DCDV+ 
Sbjct: 84  AEYGMLPRATHTRGNREAAKGKQSGRTQEIQRLIGRSLRAVTDLNALGEMSITLDCDVLN 143

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITGAWVAL   L  +   +   +L   L+G VAA+SCG+     ++DLDY 
Sbjct: 144 ADGGTRCASITGAWVALRLALGKLVATNVLPRLP--LRGQVAAVSCGLTTEGAVLDLDYV 201

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           EDS+   D NFV+T    IVE+QG+AE A F++D F  +  LA+  + +L + Q
Sbjct: 202 EDSSASADTNFVLTADRRIVEIQGTAESAPFTEDAFDNLFALARKGVTELFEAQ 255


>gi|293611262|ref|ZP_06693560.1| ribonuclease PH [Acinetobacter sp. SH024]
 gi|292826513|gb|EFF84880.1| ribonuclease PH [Acinetobacter sp. SH024]
 gi|325124022|gb|ADY83545.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 238

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 123/238 (51%), Positives = 163/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R  +Q+RE+ +TR  ++YAEGS LV+FG T +L TA+++  VP +++    GW+T
Sbjct: 1   MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+Q GR+QEIQR+IGR+LR++VDL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRCDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +   S K      LKG VAAIS GM     ++DL Y 
Sbjct: 121 ADGGTRTASITGAAVALVDAMNVL--LSQKKIKHDPLKGLVAAISVGMYQDEVLLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS    D N VMT +G  +E+QG+AE   F++    AML +A+  IA+LIK Q++ +
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELIKKQQEAL 236


>gi|227518377|ref|ZP_03948426.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX0104]
 gi|227074055|gb|EEI12018.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX0104]
          Length = 451

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 118/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   ++R+I++   V K+ EGS ++ FGDT ++ +AT+EEKVP ++R    GW+ 
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R +++DCDVIQ
Sbjct: 62  AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSVVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   + H+            +K H+AA+S G+L  GY ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  VE+QG+ E ATFS D   AML   K  I +LI  QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238


>gi|315127898|ref|YP_004069901.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas sp.
           SM9913]
 gi|315016412|gb|ADT69750.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas sp.
           SM9913]
          Length = 237

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 121/239 (50%), Positives = 161/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  NQ+R ++ TR  + +AEGS LV+FG+T +L TAT+E  VP +++    GW+ 
Sbjct: 1   MRPSERTPNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVEAGVPRFMKGQGKGWVN 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I R+LR+ +DL ALG   I IDCDVIQ
Sbjct: 61  AEYGMLPRATHTRNSREATRGKQGGRTMEIQRLIARSLRAAIDLKALGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L +M   +     S  LK  +AAIS G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASISGACVALVDALTYMR--AKGMINSNPLKHMIAAISVGIYKGQAISDLEYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N ++T++G I+EVQG+AE   FS D    +L LAK  I ++I +QK  ++
Sbjct: 179 EDSDAETDMNVILTETGKIIEVQGTAEGEPFSFDELDELLTLAKHSIREIIDVQKQALA 237


>gi|58039735|ref|YP_191699.1| ribonuclease PH [Gluconobacter oxydans 621H]
 gi|58002149|gb|AAW61043.1| Ribonuclease PH [Gluconobacter oxydans 621H]
          Length = 240

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 117/237 (49%), Positives = 159/237 (67%), Gaps = 7/237 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  ++ R +S+    +++AEGS L++ G T +L TAT+E++VP ++RN   GWITA
Sbjct: 8   RPSGRAPDENRIVSIETGFARHAEGSALIRVGGTEVLCTATIEDRVPPFLRNKGQGWITA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T +R +REA  G+Q GR+QEIQR+I R+LR+ VDL  +G R I +DCDV+ A
Sbjct: 68  EYGMLPRATHSRGQREAAKGKQSGRTQEIQRLIARSLRACVDLKKIGERTITLDCDVLNA 127

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+ITGAWVAL   L+       K + SQ L   VAA+SCG+     ++DLDY E
Sbjct: 128 DGGTRCASITGAWVALSLALK-------KAKRSQALTAQVAAVSCGLTDAGAVLDLDYVE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS+   D NFV+T  G I+E+QG+AE   F +  FF +L LAK   A L + Q   +
Sbjct: 181 DSSAQADTNFVLTADGGIIEIQGTAEDKPFQESEFFELLRLAKLGTARLFEAQNKAL 237


>gi|37528679|ref|NP_932024.1| ribonuclease PH [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|61215997|sp|Q7MAX2|RNPH_PHOLL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|36788118|emb|CAE17242.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 242

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 121/238 (50%), Positives = 162/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R I++TR  +K+AEGS LV+FGDT +L  A++EE VP +++    GW+T
Sbjct: 1   MRPTGRAAEQVRPITITRHYTKHAEGSVLVEFGDTKVLCNASVEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHTRNAREAARGKQGGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  + + + K + S  LK  VAA+S G++ G    DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALNKIVE-AGKLKESP-LKSMVAAVSVGIVDGEGRCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VM + G ++EVQG+AE   FS D   ++L LAK  + D+   Q++ +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELLSLLALAKGGLEDIFDAQRNAL 236


>gi|169632071|ref|YP_001705807.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter baumannii SDF]
 gi|169797749|ref|YP_001715542.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter baumannii AYE]
 gi|184156383|ref|YP_001844722.1| ribonuclease PH [Acinetobacter baumannii ACICU]
 gi|213155451|ref|YP_002317496.1| ribonuclease PH [Acinetobacter baumannii AB0057]
 gi|215485100|ref|YP_002327341.1| ribonuclease PH [Acinetobacter baumannii AB307-0294]
 gi|239503769|ref|ZP_04663079.1| ribonuclease PH [Acinetobacter baumannii AB900]
 gi|260552994|ref|ZP_05825909.1| ribonuclease PH [Acinetobacter sp. RUH2624]
 gi|260557749|ref|ZP_05829963.1| ribonuclease PH [Acinetobacter baumannii ATCC 19606]
 gi|301347449|ref|ZP_07228190.1| ribonuclease PH [Acinetobacter baumannii AB056]
 gi|301513309|ref|ZP_07238546.1| ribonuclease PH [Acinetobacter baumannii AB058]
 gi|301595797|ref|ZP_07240805.1| ribonuclease PH [Acinetobacter baumannii AB059]
 gi|332852852|ref|ZP_08434434.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013150]
 gi|332866699|ref|ZP_08437161.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013113]
 gi|332873553|ref|ZP_08441502.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6014059]
 gi|226736873|sp|B7H2J6|RNPH_ACIB3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736874|sp|B7IBN8|RNPH_ACIB5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736875|sp|B2I029|RNPH_ACIBC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736876|sp|B0VMP4|RNPH_ACIBS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736877|sp|B0V5W8|RNPH_ACIBY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226737251|sp|A3M0U3|RNPH_ACIBT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|169150676|emb|CAM88586.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter baumannii AYE]
 gi|169150863|emb|CAO99466.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter baumannii]
 gi|183207977|gb|ACC55375.1| RNase PH [Acinetobacter baumannii ACICU]
 gi|193075957|gb|ABO10537.2| ribonuclease PH [Acinetobacter baumannii ATCC 17978]
 gi|213054611|gb|ACJ39513.1| ribonuclease PH [Acinetobacter baumannii AB0057]
 gi|213986624|gb|ACJ56923.1| ribonuclease PH [Acinetobacter baumannii AB307-0294]
 gi|260405236|gb|EEW98733.1| ribonuclease PH [Acinetobacter sp. RUH2624]
 gi|260408922|gb|EEX02226.1| ribonuclease PH [Acinetobacter baumannii ATCC 19606]
 gi|322506253|gb|ADX01707.1| RNase PH [Acinetobacter baumannii 1656-2]
 gi|323516129|gb|ADX90510.1| ribonuclease PH [Acinetobacter baumannii TCDC-AB0715]
 gi|332728966|gb|EGJ60317.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013150]
 gi|332734468|gb|EGJ65583.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013113]
 gi|332738250|gb|EGJ69128.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6014059]
          Length = 238

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 122/238 (51%), Positives = 163/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R  +Q+RE+ +TR  ++YAEGS LV+FG T +L TA+++  VP +++    GW+T
Sbjct: 1   MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+Q GR+QEIQR+IGR+LR++VDL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRCDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +   + K      LKG VAAIS GM     ++DL Y 
Sbjct: 121 ADGGTRTASITGAAVALVDAMNVL--LAQKKIKQDPLKGLVAAISVGMYQDEVLLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS    D N VMT +G  +E+QG+AE   F++    AML +A+  IA+LIK Q++ +
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELIKKQQEAL 236


>gi|225849820|ref|YP_002730054.1| ribonuclease PH [Persephonella marina EX-H1]
 gi|254808597|sp|C0QTN9|RNPH_PERMH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|225646433|gb|ACO04619.1| ribonuclease PH [Persephonella marina EX-H1]
          Length = 261

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 119/238 (50%), Positives = 159/238 (66%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+  Q+R + + R  + YAEGS L++ G+T ++ TA++EEKVP ++R T  GWIT
Sbjct: 1   MRPDGRKPTQLRPVKIIRDFNIYAEGSVLIEMGNTKVIITASIEEKVPPFLRGTGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST +R  RE V G   GR+QEIQR+IGR+LR VVDL  LG R + +DCDVIQ
Sbjct: 61  AEYAMLPRSTESRSIREVVRGAPSGRTQEIQRLIGRSLRGVVDLKKLGERTLWVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITGA++A+ D +  + +     Q    LK +VAAIS G++    ++DL++ 
Sbjct: 121 ADGGTRVASITGAFIAVADAMIKLTESGKVRQ--NPLKDYVAAISTGIVGNEVVLDLNFK 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS+  VD N VMT SG+ VEVQ + E  +F+Q  F  ML   K  I  LI +QK  I
Sbjct: 179 EDSSAKVDMNLVMTGSGNFVEVQATGEEYSFTQQEFDKMLEYGKLGINKLIHIQKKFI 236


>gi|157373519|ref|YP_001472119.1| tRNA nucleotidyltransferase [Shewanella sediminis HAW-EB3]
 gi|189043777|sp|A8FQ68|RNPH_SHESH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157315893|gb|ABV34991.1| tRNA nucleotidyltransferase [Shewanella sediminis HAW-EB3]
          Length = 237

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 123/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q R +++TR+ + +AEGS LV+FGDT +L TA+ EE VP +++    GW+T
Sbjct: 1   MRPSDRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+Q GR+QEIQR+IGR+LR+ VD+ ALG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D L            +  LK  +AA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALVDSLNWAR--GKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G ++E+QG+AE   FS +   ++L LAK  I +++ +QK  +S
Sbjct: 179 EDSEAETDMNVVMTETGKMIEIQGTAEGEPFSHEELLSLLELAKHGIREIVDIQKAALS 237


>gi|242237612|ref|YP_002985793.1| ribonuclease PH [Dickeya dadantii Ech703]
 gi|242129669|gb|ACS83971.1| ribonuclease PH [Dickeya dadantii Ech703]
          Length = 238

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 124/240 (51%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q R I+LTR  +K+AEG+ LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPTGRSAQQTRPITLTRHYTKHAEGAVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ VDL+ LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNAREAARGKQGGRTLEIQRLIARSLRAAVDLAKLGEYTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +   S K      +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADAIAGLV-ASGKLA-KNPMKGMVAAVSVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G ++EVQG+AE   FS +    +L LA+  I D+I+ QK  ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEQLLELLALARGGIEDIIRAQKAALAN 238


>gi|255320662|ref|ZP_05361839.1| ribonuclease PH [Acinetobacter radioresistens SK82]
 gi|262380705|ref|ZP_06073858.1| ribonuclease PH [Acinetobacter radioresistens SH164]
 gi|255302278|gb|EET81518.1| ribonuclease PH [Acinetobacter radioresistens SK82]
 gi|262297653|gb|EEY85569.1| ribonuclease PH [Acinetobacter radioresistens SH164]
          Length = 238

 Score =  236 bits (603), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 123/238 (51%), Positives = 161/238 (67%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R  NQ+R++ +TR  ++YAEGS LV+FG T +L TA+++  VP +++    GW+T
Sbjct: 1   MRIDQRALNQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR++VDL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D +  +     K      LKG VAAIS GM     ++DL Y 
Sbjct: 121 ADGGTRTAAITGAAVALVDAMNVL--LERKKIKHDPLKGLVAAISVGMYQDEVLLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS    D N VMT +G  +E+QG+AE   F++    AML LA+  I++LIK Q++ +
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQCNAMLELAEQGISELIKKQQEAL 236


>gi|167622362|ref|YP_001672656.1| ribonuclease PH [Shewanella halifaxensis HAW-EB4]
 gi|189043775|sp|B0TQK4|RNPH_SHEHH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|167352384|gb|ABZ74997.1| ribonuclease PH [Shewanella halifaxensis HAW-EB4]
          Length = 237

 Score =  236 bits (603), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 123/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q R +++TR+ + +AEGS LV+FGDT +L TA+ EE VP +++    GW+T
Sbjct: 1   MRPSNRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+Q GR+QEIQR+IGR+LR+ VD+  LG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAARGKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D L            +  LK  +AA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G I+E+QG+AE   FS +   ++L LAK  I +++ +QK  +S
Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLSLLELAKHGIREIVDIQKASLS 237


>gi|146328830|ref|YP_001209573.1| ribonuclease PH [Dichelobacter nodosus VCS1703A]
 gi|166228278|sp|A5EV74|RNPH_DICNV RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|146232300|gb|ABQ13278.1| ribonuclease PH [Dichelobacter nodosus VCS1703A]
          Length = 238

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 118/239 (49%), Positives = 168/239 (70%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +QMRE+ + R V+ +AEGS L+  G T +L TA++EE+VP ++R    GW+T
Sbjct: 1   MRPHHRLPDQMRELHIERAVNCHAEGSALITLGRTQVLCTASIEERVPPFLRGQNQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVDLSALG R I +DCDV+Q
Sbjct: 61  AEYGMLPRATHERSTREAARGKQQGRTQEIQRLIGRSLRAVVDLSALGERSITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQ-HMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTAAI+G ++AL D ++  M+    K   +  L+G +AA+S G   G  ++DL+Y
Sbjct: 121 ADGGTRTAAISGGFIALADAIRVLMQQGRLK---ANPLRGQLAAVSVGFYQGEALLDLEY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS  + D N VM D+G ++E+QG+AE   FS+    A+L+LA+  I++++  Q+ V+
Sbjct: 178 CEDSAAETDMNIVMNDAGALIEIQGTAEGRAFSRQEMNALLDLAEKGISEIMAEQRRVL 236


>gi|326318286|ref|YP_004235958.1| ribonuclease PH [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375122|gb|ADX47391.1| ribonuclease PH [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 253

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 120/238 (50%), Positives = 160/238 (67%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R +GR  + +R + +TR  + +AEGS LV+FG T +L TA++EE+VP   R +  GW+TA
Sbjct: 12  RSAGRGVDALRPVRITRHYTMHAEGSVLVEFGHTKVLCTASVEERVPPHKRGSGEGWVTA 71

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V DL ALG R I +DCDV+QA
Sbjct: 72  EYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLRALGERTIQLDCDVLQA 131

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGAWVA HD +  +     K   S +    +AA+S G++ G P++DL+Y E
Sbjct: 132 DGGTRTAAITGAWVAAHDAVSALL-AGGKIAASPI-TAPLAAVSVGIVQGTPLLDLEYTE 189

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   D D N VM D G  VEVQG+AE   F++     +L+LA   +  LI LQ+  +S
Sbjct: 190 DVQCDTDMNVVMMDGGRFVEVQGTAEGVAFTRSEMDRLLDLAAQGVDALIALQRQALS 247


>gi|311277436|ref|YP_003939667.1| ribonuclease PH [Enterobacter cloacae SCF1]
 gi|308746631|gb|ADO46383.1| ribonuclease PH [Enterobacter cloacae SCF1]
          Length = 238

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 123/240 (51%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  +Q+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSAHQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L ++   + K + +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNNLV-AAGKLK-TNPMKGMVAAVSVGIVDGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALEN 238


>gi|262374498|ref|ZP_06067772.1| ribonuclease PH [Acinetobacter junii SH205]
 gi|262310494|gb|EEY91584.1| ribonuclease PH [Acinetobacter junii SH205]
          Length = 238

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 123/238 (51%), Positives = 162/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R  +Q+R++ +TR  ++YAEGS LV+FG T +L TA+++  VP +++    GW+T
Sbjct: 1   MRIDQRALDQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR++VDL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D +  +   SNK      LKG VAAIS GM     ++DL Y 
Sbjct: 121 ADGGTRTAAITGAAVALVDAMNVL--LSNKKIKHDPLKGLVAAISVGMYQDEVLLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS    D N VMT +G  +E+QG+AE   F++    AML LA+  I++LI+ Q+  +
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRQQCNAMLELAEKGISELIQKQQQAL 236


>gi|46015433|pdb|1R6L|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
           From Pseudomonas Aeruginosa
          Length = 239

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 121/238 (50%), Positives = 159/238 (66%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T + E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYG LPRSTG R +REA  G+QGGR+ EIQR+IGR+LR+ +DLS LG   + IDCDVIQA
Sbjct: 63  EYGXLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++           LK  VAA+S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGATVALIDALAVLK--KRGALKGNPLKQXVAAVSVGIYQGVPVLDLDYLE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  + D N V TD+G  +EVQG+AE A F      A L LA+    +L +LQ+  ++
Sbjct: 181 DSAAETDLNVVXTDAGGFIEVQGTAEGAPFRPAELNAXLELAQQGXQELFELQRAALA 238


>gi|307546985|ref|YP_003899464.1| ribonuclease PH [Halomonas elongata DSM 2581]
 gi|307219009|emb|CBV44279.1| ribonuclease PH [Halomonas elongata DSM 2581]
          Length = 245

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 119/242 (49%), Positives = 165/242 (68%), Gaps = 12/242 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q R+I LTR  +++AEGS LV+FGDT +L  A++E  VP W+R  K GW+TA
Sbjct: 7   RPSGRATDQTRDIRLTRDYTRHAEGSVLVEFGDTRVLCNASVEAGVPRWLRGKKQGWVTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+QGGR+ EIQR+IGR+LR+ ++L  LG   I +DCDVIQA
Sbjct: 67  EYGMLPRATHTRGGREASRGKQGGRTVEIQRLIGRSLRASINLKKLGEFTITVDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH-----VAAISCGMLCGYPIVD 176
           DGGTRTAAITG  VAL D ++++       Q  +++KG      ++++S G+  G P+VD
Sbjct: 127 DGGTRTAAITGGCVALVDAVRYL-------QREKLIKGDPFHQLISSVSVGIYQGTPVVD 179

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           LDY EDS    D N VM ++G ++EVQG+AE  T+S+    AML+LA+    +L   Q++
Sbjct: 180 LDYPEDSRAGTDMNVVMAENGELIEVQGTAESGTYSRAELNAMLDLAEKAGGELFDHQRE 239

Query: 237 VI 238
            +
Sbjct: 240 AL 241


>gi|322418585|ref|YP_004197808.1| ribonuclease PH [Geobacter sp. M18]
 gi|320124972|gb|ADW12532.1| ribonuclease PH [Geobacter sp. M18]
          Length = 239

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 119/237 (50%), Positives = 164/237 (69%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R +GR  + +RE+ +TR   K+AEGS L++FGDT ++  AT+E KVP +++    GW+TA
Sbjct: 3   RTNGRAADALREVKITRNYLKHAEGSVLIEFGDTKVICNATVETKVPSFLKGKGTGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R +RE+  G+  GR+ EIQR+IGR+LR+VVD+  LG R I+IDCDVIQA
Sbjct: 63  EYCMLPRATHTRNQRESSKGKLSGRTHEIQRLIGRSLRAVVDMEKLGERSILIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D LQ + D  N       L+  VAA+S G++ G P +DLDY E
Sbjct: 123 DGGTRTASITGAYVALADALQSLVD--NGELTRSPLREAVAAVSVGIVDGVPFLDLDYPE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS+ +VD NFVMT S   VEVQG+AE   F+ +   AM + A   +  L ++Q++ +
Sbjct: 181 DSSAEVDMNFVMTSSMRFVEVQGTAEAEPFTIEQMDAMRSHAILGLTRLFEIQQEAL 237


>gi|309388890|gb|ADO76770.1| RNAse PH [Halanaerobium praevalens DSM 2228]
          Length = 239

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 119/241 (49%), Positives = 165/241 (68%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+ NQ+REI +TR  +KYAEGS L++ GDT +L   ++E+ VP ++R    GW+T
Sbjct: 1   MRTDGREYNQLREIEITRNYTKYAEGSVLIETGDTMVLCNVSIEDSVPYFLRGQNKGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY +LPR+T +R  REA   +  GR+QEIQR+IGR+LR+++DL  +G R I +DCDV+Q
Sbjct: 61  AEYSLLPRATQSRNIREAAKRKLSGRTQEIQRLIGRSLRAIIDLEKIGERTIWVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D +  +     K +    LKG++AA S G++ G  ++DL Y 
Sbjct: 121 ADGGTRTAAITGAFVALVDGINFLL-AEGKIE-ENPLKGYMAATSVGLVKGEALLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VMT++G I+E+QG+AE   FS++    M  LA+  I  LI+ QK V+  
Sbjct: 179 EDSQAQVDMNIVMTEAGKIIEIQGTAEENPFSREELDQMYELAEKGILGLIEEQKLVLGG 238

Query: 241 E 241
           E
Sbjct: 239 E 239


>gi|209364175|ref|YP_001425114.2| ribonuclease PH [Coxiella burnetii Dugway 5J108-111]
 gi|212213192|ref|YP_002304128.1| ribonuclease PH [Coxiella burnetii CbuG_Q212]
 gi|212218134|ref|YP_002304921.1| ribonuclease PH [Coxiella burnetii CbuK_Q154]
 gi|215918932|ref|NP_819342.2| ribonuclease PH [Coxiella burnetii RSA 493]
 gi|206583817|gb|AAO89856.2| ribonuclease PH [Coxiella burnetii RSA 493]
 gi|207082108|gb|ABS77511.2| ribonuclease PH [Coxiella burnetii Dugway 5J108-111]
 gi|212011602|gb|ACJ18983.1| ribonuclease PH [Coxiella burnetii CbuG_Q212]
 gi|212012396|gb|ACJ19776.1| ribonuclease PH [Coxiella burnetii CbuK_Q154]
          Length = 239

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 115/239 (48%), Positives = 164/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  N++R +S T + ++YAEGS LV  G+T ++  A++ E VP +++N++ GW+T
Sbjct: 3   MRPSKRAANELRPLSFTTQFTRYAEGSVLVTLGNTKVICNASIVEGVPRFLKNSEQGWLT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+IGR+LR+ +DL  LG   I IDCDVIQ
Sbjct: 63  AEYGMLPRSTHSRMDREASRGKQGGRTVEIQRLIGRSLRAALDLKLLGPYTITIDCDVIQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI G+ +A+ + L+H++        +  LK  VAA+S G+  G P++DLDY 
Sbjct: 123 ADGGTRTAAINGSCIAMIEALRHLQ--RKGILQTDPLKHKVAAVSVGIYKGVPVLDLDYA 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N VMTD+   +E+QG+AE   F      A++NLA+  I  +I+ Q++ +S
Sbjct: 181 EDSNAHTDMNVVMTDNDAFIEIQGTAEGDAFHAKELDALINLARHGIKQIIEKQQEALS 239


>gi|153208640|ref|ZP_01946892.1| ribonuclease PH [Coxiella burnetii 'MSU Goat Q177']
 gi|161829800|ref|YP_001596248.1| ribonuclease PH [Coxiella burnetii RSA 331]
 gi|165919767|ref|ZP_02219510.1| ribonuclease PH [Coxiella burnetii RSA 334]
 gi|61216043|sp|Q83EL9|RNPH_COXBU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043758|sp|A9KGR9|RNPH_COXBN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043759|sp|A9NB33|RNPH_COXBR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|120575826|gb|EAX32450.1| ribonuclease PH [Coxiella burnetii 'MSU Goat Q177']
 gi|161761667|gb|ABX77309.1| ribonuclease PH [Coxiella burnetii RSA 331]
 gi|165916850|gb|EDR35454.1| ribonuclease PH [Coxiella burnetii RSA 334]
          Length = 237

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 115/239 (48%), Positives = 164/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  N++R +S T + ++YAEGS LV  G+T ++  A++ E VP +++N++ GW+T
Sbjct: 1   MRPSKRAANELRPLSFTTQFTRYAEGSVLVTLGNTKVICNASIVEGVPRFLKNSEQGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+IGR+LR+ +DL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMDREASRGKQGGRTVEIQRLIGRSLRAALDLKLLGPYTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI G+ +A+ + L+H++        +  LK  VAA+S G+  G P++DLDY 
Sbjct: 121 ADGGTRTAAINGSCIAMIEALRHLQ--RKGILQTDPLKHKVAAVSVGIYKGVPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N VMTD+   +E+QG+AE   F      A++NLA+  I  +I+ Q++ +S
Sbjct: 179 EDSNAHTDMNVVMTDNDAFIEIQGTAEGDAFHAKELDALINLARHGIKQIIEKQQEALS 237


>gi|257783975|ref|YP_003179192.1| ribonuclease PH [Atopobium parvulum DSM 20469]
 gi|257472482|gb|ACV50601.1| ribonuclease PH [Atopobium parvulum DSM 20469]
          Length = 253

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 124/238 (52%), Positives = 165/238 (69%), Gaps = 6/238 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R  +Q+R ++L R + K A+GSCLV FGDT +L  AT+EE VP W R ++ GW+T
Sbjct: 16  LRSYNRAWDQIRPVTLERNLMKNADGSCLVSFGDTRVLCAATIEEGVPAWRRASRAGWVT 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP ST  R KRE  + +  GRS EI+R+IGR+LRSVVDL+ LG   I +DCDV+Q
Sbjct: 76  AEYAMLPASTNQRTKRERANRK--GRSMEIERLIGRSLRSVVDLNRLGEYTITLDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGAWVALHD L  + +   K  LS++ L G VAAIS G++ G  ++DLDY
Sbjct: 134 ADGGTRTASITGAWVALHDALFSLVE---KDVLSRLPLTGQVAAISMGVVDGQVLLDLDY 190

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            EDS  D+D N V T+SG I+EVQG+ E   F ++    +L++ +  IA L++LQ  V
Sbjct: 191 PEDSHADIDMNLVGTESGQIIEVQGTGEGGPFDREKLNQLLDVGQAGIAHLVELQNQV 248


>gi|300721256|ref|YP_003710526.1| RNase PH [Xenorhabdus nematophila ATCC 19061]
 gi|297627743|emb|CBJ88269.1| RNase PH [Xenorhabdus nematophila ATCC 19061]
          Length = 247

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 119/240 (49%), Positives = 162/240 (67%), Gaps = 2/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R +GR   Q+R I +TR  +K+AEGS LV+FGDT +L  A++EE +P +++    GWITA
Sbjct: 7   RPAGRTAGQVRPIKMTRHYTKHAEGSVLVEFGDTKVLCNASVEEGIPRFLKGQGQGWITA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T +R  REA  G+Q GR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQA
Sbjct: 67  EYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAI+GA VAL D L  +     K + S  LK  VAA+S G++ G  + DL+Y E
Sbjct: 127 DGGTRTAAISGACVALVDALNKLV-ADGKLKESP-LKSMVAAVSVGIVGGEGLCDLEYVE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  + D N VM D G ++EVQG+AE   FS D   ++L+LAK+ +  + + Q+D +  +
Sbjct: 185 DSAAETDMNVVMIDDGRMIEVQGTAEGEPFSHDELLSLLSLAKEGLETIFEAQRDALKQD 244


>gi|312880664|ref|ZP_07740464.1| RNAse PH [Aminomonas paucivorans DSM 12260]
 gi|310783955|gb|EFQ24353.1| RNAse PH [Aminomonas paucivorans DSM 12260]
          Length = 248

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 120/237 (50%), Positives = 163/237 (68%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  + +R + L R  ++YAEGS  + FG T +L TAT+E+KVP ++R +  GW++A
Sbjct: 3   RIDGRSFDALRPLELERGCNRYAEGSARIAFGHTQVLCTATVEDKVPPFLRGSGKGWVSA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  R++  GR   R QEIQR+IGR+LR+ VDL ALG R + IDCDVIQA
Sbjct: 63  EYAMLPRATHQRTPRDSTRGRPNARGQEIQRLIGRSLRAAVDLEALGERTVWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D L+ + D +    L   L+  VAA+S G+L G P++DL Y E
Sbjct: 123 DGGTRTASITGAFVALVDALRWIRDRNGLPSLP--LRHQVAAVSVGLLGGCPLLDLCYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  +VD N VM + G  VE+QG+ E A FS+  F A+L+LA+  IA L +LQ+  +
Sbjct: 181 DSGAEVDCNVVMAEDGRFVEIQGTGEDALFSRASFDALLDLARQGIAALHRLQRSTL 237


>gi|315150398|gb|EFT94414.1| ribonuclease PH [Enterococcus faecalis TX0012]
          Length = 451

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 118/239 (49%), Positives = 159/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   ++R+I++   V K+ EGS ++ FGDT ++ +AT+EEKVP ++R    GW+ 
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I++DCDVIQ
Sbjct: 62  AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   + H+            +K H+AA+S G+L  GY ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  VE+QG+ E ATFS D    ML   K  I +LI  QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNTMLFYGKTGIEELIAYQKEAL 238


>gi|291619462|ref|YP_003522204.1| Rph [Pantoea ananatis LMG 20103]
 gi|291154492|gb|ADD79076.1| Rph [Pantoea ananatis LMG 20103]
 gi|327395785|dbj|BAK13207.1| ribonuclease Rph [Pantoea ananatis AJ13355]
          Length = 238

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 123/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  +Q+R ++LTR  +K+AEGS LV+FG+T +L TAT++E VP +++    GW+T
Sbjct: 1   MRPAGRSAHQVRPVTLTRNYTKHAEGSVLVEFGETKVLCTATVDEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMAREAAKGKQGGRTLEIQRLIARSLRAAVDLKVLGEYTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   S K + +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKLV-ASGKLK-ANPMKGMVAAVSVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +   A+L LA+  I +LI+ QK  +  
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIEELIQAQKAALEK 238


>gi|332970986|gb|EGK09959.1| tRNA nucleotidyltransferase [Kingella kingae ATCC 23330]
          Length = 242

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 118/234 (50%), Positives = 164/234 (70%), Gaps = 4/234 (1%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  N++REI +T     +A+GS L++ G+T ++ TAT++E VP ++R    GW+TAEYGM
Sbjct: 8   RAANELREIRITPNFLPHADGSVLIECGNTKVICTATIDENVPPFLRGKNQGWVTAEYGM 67

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST +R+KREA +G+Q GR+QEIQR+IGR+LR+ VD+  LG RQI+IDCDVIQADGGT
Sbjct: 68  LPASTQSRMKREAAAGKQSGRTQEIQRLIGRSLRACVDMQKLGERQILIDCDVIQADGGT 127

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDST 184
           RTA+ITGA+VAL   +Q M    N  +L+   L G VAAIS G++ G P++DLDY EDS 
Sbjct: 128 RTASITGAFVALKIAVQKM---LNDGRLTDTPLMGSVAAISVGVVGGVPLLDLDYPEDSG 184

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            D D N VM ++  I+E+QG+AE A F  D    ++ L +  I +L + Q+  +
Sbjct: 185 CDSDVNLVMLNAEKIIEIQGTAEGAAFGLDELQQLIALGQKGIRELTEWQEKAV 238


>gi|226326904|ref|ZP_03802422.1| hypothetical protein PROPEN_00764 [Proteus penneri ATCC 35198]
 gi|225204741|gb|EEG87095.1| hypothetical protein PROPEN_00764 [Proteus penneri ATCC 35198]
          Length = 251

 Score =  236 bits (601), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 124/238 (52%), Positives = 166/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + RQ NQ+R I++TR  +K+AEGS LV+FGDT +L  AT+E+ VP +++    GW+T
Sbjct: 14  MRPADRQANQVRPITITRHYTKHAEGSVLVEFGDTKVLCNATVEDGVPRFLKGQGQGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+Q GR+ EIQR+I R+LR+ VDL ALG   I +DCDVIQ
Sbjct: 74  AEYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKALGEFTITVDCDVIQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  M +   K + S  LK  VAA+S G++ G P+ DL+Y 
Sbjct: 134 ADGGTRTASISGACVALVDALNKMVE-EGKLKKSP-LKSMVAAVSVGIVDGEPLCDLEYV 191

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VM D G ++EVQG+AE A FS +   A+L LAK  +  + + QK+ +
Sbjct: 192 EDSAAETDMNVVMIDDGRMIEVQGTAEGAPFSHEELLALLALAKGGLEKIFEAQKEAL 249


>gi|296134058|ref|YP_003641305.1| ribonuclease PH [Thermincola sp. JR]
 gi|296032636|gb|ADG83404.1| ribonuclease PH [Thermincola potens JR]
          Length = 239

 Score =  236 bits (601), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 119/241 (49%), Positives = 162/241 (67%), Gaps = 6/241 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R + +TR   K+AEGS L++ GDT ++ TAT+E+KVP +++    GWITA
Sbjct: 3   RNDGRANDQLRPVKITRHYIKHAEGSVLIEMGDTKVICTATVEDKVPPFMKGEGKGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRS   R+ REA  G+ GGR+ EIQR+IGR+LR+VVDL ALG R + +DCDVIQA
Sbjct: 63  EYGMLPRSAATRIPREAAKGKIGGRTYEIQRLIGRSLRAVVDLEALGERTVTVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMED--CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           DGGTRTA+ITGA+VAL D L+H  D     KF +      ++AA+S G + G  ++DL +
Sbjct: 123 DGGTRTASITGAFVALVDALRHQVDQGVLEKFPVLD----YMAAVSVGKVNGEILLDLAF 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  +VD N VMT  G  +EVQG+AE + F ++     L +A   I  LI+ Q +V+ 
Sbjct: 179 SEDSVAEVDMNVVMTRGGKFLEVQGTAEGSPFDREELEKFLEMAGKGIQQLIQAQMEVLG 238

Query: 240 N 240
            
Sbjct: 239 E 239


>gi|119947081|ref|YP_944761.1| ribonuclease PH [Psychromonas ingrahamii 37]
 gi|166228305|sp|A1T097|RNPH_PSYIN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|119865685|gb|ABM05162.1| RNAse PH [Psychromonas ingrahamii 37]
          Length = 239

 Score =  236 bits (601), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 120/241 (49%), Positives = 158/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q REI +TR  + YAEGS L++ G+T +L  A++   VP +++    GW+T
Sbjct: 1   MRPSNRTPEQNREIKITRHYTDYAEGSVLIEMGNTKVLCNASVSGSVPRFLKGKGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+QGGR+ EIQR+I R+LR+ VDL+ALG   I +DCDVIQ
Sbjct: 61  AEYAMLPRATHIRNMREAAKGKQGGRTLEIQRLIARSLRAAVDLNALGENMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG  +AL D L  M     K + S  LK  +AA+S G+  G P+ DLDY 
Sbjct: 121 ADGGTRTAAITGGCIALADALNWMVK-KGKLKKSP-LKQMIAAVSVGIYQGTPVCDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+SG ++E+Q +AE   FS +   +ML+LAK  I  L+  QK  ++ 
Sbjct: 179 EDSNAETDTNVVMTESGGLIEIQATAEDGAFSHEQLLSMLSLAKGGIEALVVEQKKALNA 238

Query: 241 E 241
           E
Sbjct: 239 E 239


>gi|88797478|ref|ZP_01113067.1| ribonuclease PH [Reinekea sp. MED297]
 gi|88779650|gb|EAR10836.1| ribonuclease PH [Reinekea sp. MED297]
          Length = 239

 Score =  236 bits (601), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 116/239 (48%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ +Q+RE++L R  +K+AEGS LV FGDT ++ TA+++  VP +++    GW+T
Sbjct: 1   MRPSGRQTDQLREVTLQRHFTKHAEGSVLVSFGDTQVICTASVDSGVPRFMKGEGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG+R +REA  G+Q GR+ EI R+IGR+LR+ +D+  LG   + IDCDVIQ
Sbjct: 61  AEYGMLPRATGSRNQREAARGKQTGRTVEIGRLIGRSLRAAIDMELLGENTVTIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D +  M   +        +K +VAA+S G+     ++DLDY 
Sbjct: 121 ADGGTRTASITGAFVALSDAINGM--LAEGTLKKNPIKHNVAAVSVGIWQDTAVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST + D N V+  +G  VE+QG+AE   F  D   AML+LA+    DL ++Q   ++
Sbjct: 179 EDSTAETDLNVVLASNGGFVEIQGTAEGEPFMPDQLKAMLDLAEKGGRDLFEIQNRALT 237


>gi|120612226|ref|YP_971904.1| ribonuclease PH [Acidovorax citrulli AAC00-1]
 gi|120590690|gb|ABM34130.1| RNAse PH [Acidovorax citrulli AAC00-1]
          Length = 253

 Score =  236 bits (601), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 120/238 (50%), Positives = 161/238 (67%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R +GR  + +R + +TR  + +AEGS LV+FG T +L TA++EE+VP   R +  GW+TA
Sbjct: 12  RSAGRGVDALRPVRITRHYTMHAEGSVLVEFGHTKVLCTASVEERVPPHKRGSGEGWVTA 71

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V DL ALG R I +DCDV+QA
Sbjct: 72  EYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLRALGERTIQLDCDVLQA 131

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGAWVA HD +  + +   K   S +    +AA+S G++ G P++DL+Y E
Sbjct: 132 DGGTRTAAITGAWVAAHDAVSALLE-GGKIAASPI-TAPLAAVSVGIVQGTPLLDLEYTE 189

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   D D N VM D G  VEVQG+AE   F++     +L+LA   +  LI LQ+  +S
Sbjct: 190 DVQCDTDMNVVMMDGGRFVEVQGTAEGIAFTRSEMDRLLDLAARGVDALIALQRQALS 247


>gi|90407865|ref|ZP_01216041.1| putative ribonuclease PH [Psychromonas sp. CNPT3]
 gi|90311040|gb|EAS39149.1| putative ribonuclease PH [Psychromonas sp. CNPT3]
          Length = 239

 Score =  236 bits (601), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 120/241 (49%), Positives = 157/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q REI +TR  + YAEGS L++ G+T +L  A++ + VP +++    GW+T
Sbjct: 1   MRPSKRTPEQNREIKITRNFTDYAEGSVLIEIGNTKVLCNASVSDSVPRFLKGKGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +REA  G+QGGR+ EIQR+I R+LR+ VDL A G   I +DCDVIQ
Sbjct: 61  AEYAMLPRATHTRNQREAAKGKQGGRTLEIQRLIARSLRAAVDLDAFGENMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +AL D L  M     K + S  LK  +AA+S G+    P+ DLDY 
Sbjct: 121 ADGGTRTASITGACIALADALNWMVK-EGKIKKSP-LKQMIAAVSVGIYKDTPVCDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS    D N VMT+ G ++E+QG+AE   FS +   AML+LAK  I  LI  QK  ++ 
Sbjct: 179 EDSNAQTDMNVVMTEDGGMIEIQGTAEDGAFSHEQLLAMLSLAKGGIDKLIVEQKKALTG 238

Query: 241 E 241
           E
Sbjct: 239 E 239


>gi|72162764|ref|YP_290421.1| ribonuclease PH [Thermobifida fusca YX]
 gi|71916496|gb|AAZ56398.1| RNAse PH [Thermobifida fusca YX]
          Length = 239

 Score =  236 bits (601), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 117/239 (48%), Positives = 163/239 (68%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R + +TR   ++AEGS L++FG+T +L  AT+EE VP W R T  GW+TA
Sbjct: 3   RPDGRTPNQLRPVRITRNWLRHAEGSALIEFGETRVLCAATVEEGVPRWRRGTGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+VVD  A+G   I +DCDV+QA
Sbjct: 63  EYAMLPRATDTRSARESVKGKIGGRTHEISRLIGRSLRAVVDFKAMGEYTITLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-SQVLKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTAAITGA+VAL D ++++     +  L +  L G VAA+S G++ G P +DL+Y 
Sbjct: 123 DGGTRTAAITGAYVALVDAVRYLR---KQLDLKTNPLTGSVAAVSVGIVQGQPRLDLNYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N V+T +G  +E+QG+AE A F +     +L+LA    A+L ++QK  +S
Sbjct: 180 EDSVAETDMNVVVTGTGEFIEIQGTAENAPFDRKLLDTLLDLAVAGCAELTEIQKKALS 238


>gi|89052697|ref|YP_508148.1| ribonuclease PH [Jannaschia sp. CCS1]
 gi|88862246|gb|ABD53123.1| RNAse PH [Jannaschia sp. CCS1]
          Length = 209

 Score =  236 bits (601), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 109/206 (52%), Positives = 154/206 (74%), Gaps = 2/206 (0%)

Query: 29  LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
           +++ GDTH+L TATLE +VP +++N+  GW+TAEYGMLPR+T  R++REA +G+Q GR+Q
Sbjct: 1   MIRCGDTHVLCTATLEARVPPFLKNSGLGWVTAEYGMLPRATHTRMRREAAAGKQSGRTQ 60

Query: 89  EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
           EIQR+IGR+LR+ +D SALG RQI +DCDVIQADGGTR A+ITG WVAL   +  +    
Sbjct: 61  EIQRLIGRSLRAGIDRSALGERQITVDCDVIQADGGTRCASITGGWVALRLAVNKL--LK 118

Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
           +   ++  +  H+AA+SCG+  G P++DLDY EDS    D NF+MT +G +VE+Q SAE 
Sbjct: 119 SGEIVTDPIVDHIAAVSCGIYAGQPVLDLDYPEDSEAGTDGNFIMTGAGQVVELQASAEG 178

Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQ 234
           ATFS+D F  + +LA+  +A+L++ Q
Sbjct: 179 ATFSRDEFNELYSLAEKGVAELVQAQ 204


>gi|42524118|ref|NP_969498.1| ribonuclease PH [Bdellovibrio bacteriovorus HD100]
 gi|61215946|sp|Q6MJR9|RNPH_BDEBA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|39576326|emb|CAE80491.1| ribonuclease PH [Bdellovibrio bacteriovorus HD100]
          Length = 243

 Score =  236 bits (601), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 122/238 (51%), Positives = 159/238 (66%), Gaps = 4/238 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR  +Q+R I +T  VS+YAEGS +V+FG T +L TAT E K P W+  T  GWIT
Sbjct: 1   MRADGRLFDQLRNIKITPNVSEYAEGSAIVEFGRTKVLCTATYESKAPSWLLGTGAGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R++R+      GGR+QEI R+IGR+LR+ VDL  LG +QIIIDCDV+ 
Sbjct: 61  AEYGMLPRSTHTRIRRD--KSMTGGRTQEISRLIGRSLRAAVDLKQLGEKQIIIDCDVLN 118

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TG +VAL   L+ +   S    L   L  +V+AIS G+  G  ++DL+Y 
Sbjct: 119 ADGGTRTASVTGGFVALALALKKLHAVSEIKTLP--LINYVSAISVGLHEGQILLDLNYD 176

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS I  D NFVMTD G  VEVQG+AE   F++D  F M+++A+    +L   Q  V+
Sbjct: 177 EDSAIGTDMNFVMTDKGQFVEVQGTAEHVPFTRDQLFKMMDVAEKGCRELFIHQASVM 234


>gi|39996894|ref|NP_952845.1| ribonuclease PH [Geobacter sulfurreducens PCA]
 gi|61215993|sp|Q74C79|RNPH_GEOSL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|39983782|gb|AAR35172.1| ribonuclease PH [Geobacter sulfurreducens PCA]
 gi|307634928|gb|ADI84630.2| ribonuclease PH [Geobacter sulfurreducens KN400]
          Length = 238

 Score =  235 bits (600), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 122/238 (51%), Positives = 163/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR    +R I +TR+  K+AEGS LV+FGDT +L TA++EE VP ++R    GW+T
Sbjct: 1   MRSDGRNPASLRNIRITRKYLKHAEGSVLVEFGDTKVLCTASVEESVPPFLRGKGGGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+ GGR+ EIQR+IGR+LR+V DL+ LG R ++IDCDV+Q
Sbjct: 61  AEYSMLPRATHTRSPREAAKGKLGGRTHEIQRLIGRSLRAVTDLTLLGERSVLIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D  Q +   S     +  ++  VAA+S G++ G  ++DL+Y 
Sbjct: 121 ADGGTRTASITGAYVALVDAFQWL--VSQGTIATLPVREAVAAVSVGIVGGEVLLDLNYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  DVD NFVMT SG  VEVQG+AE   F+      M +LA   I  L+ +Q++V+
Sbjct: 179 EDSRADVDMNFVMTSSGRFVEVQGTAEAEPFTCAQMDDMRSLAMIGIERLMAIQQEVL 236


>gi|239994379|ref|ZP_04714903.1| RNase PH (tRNA nucleotidyltransferase) [Alteromonas macleodii ATCC
           27126]
          Length = 237

 Score =  235 bits (600), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 162/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R +++TR+ + +AEGS LV+FG+T +L  AT+EE VP +++    GWIT
Sbjct: 1   MRPSGRTASQIRPVTITRQYTCHAEGSVLVEFGNTKVLCNATVEEGVPRFMKGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYSMLPRATHTRSGREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L +M   +     +  LK  +AA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALTYMR--AKGIIKTNPLKHMIAALSVGIYEGTPIADLEYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G ++EVQG+AE   FS +    ML + K  + +L  +QK  ++
Sbjct: 179 EDSEAETDMNIVMTETGKLIEVQGTAEGEPFSFEELDEMLKIGKHGLRELFDIQKAALA 237


>gi|299772068|ref|YP_003734094.1| ribonuclease PH [Acinetobacter sp. DR1]
 gi|298702156|gb|ADI92721.1| ribonuclease PH [Acinetobacter sp. DR1]
          Length = 238

 Score =  235 bits (600), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 122/238 (51%), Positives = 162/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R  +Q+RE+ +TR  ++YAEGS LV+FG T +L TA+++  VP +++    GW+T
Sbjct: 1   MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+Q GR+QEIQR+IGR+LR++VDL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRCDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +   S K      LKG VAAIS GM     ++DL Y 
Sbjct: 121 ADGGTRTASITGAAVALVDAMNVL--LSQKKIKHDPLKGLVAAISVGMYQDEVLLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS    D N VMT +G  +E+QG+AE   F++     ML +A+  IA+LIK Q++ +
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNDMLEMAEKGIAELIKKQQEAL 236


>gi|87200077|ref|YP_497334.1| ribonuclease PH [Novosphingobium aromaticivorans DSM 12444]
 gi|87135758|gb|ABD26500.1| RNAse PH [Novosphingobium aromaticivorans DSM 12444]
          Length = 227

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 118/228 (51%), Positives = 158/228 (69%), Gaps = 2/228 (0%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           MR IS+    +K+AEGS L+ FGDT +L TA++EE+VP ++R    GW+TAEY MLPR+T
Sbjct: 1   MRAISIETAFTKHAEGSVLICFGDTKVLVTASVEERVPPFLRGKGEGWVTAEYSMLPRAT 60

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
             R  REA  G+Q GR+QEIQR+IGR+LR+V DL  LG RQI +DCDVIQADGGTRTAAI
Sbjct: 61  HTRGSREAAKGKQSGRTQEIQRLIGRSLRAVTDLKKLGERQITLDCDVIQADGGTRTAAI 120

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
           +GAWVAL   +Q + D     +    L   VAA+SCG++ G P++DLDY EDS+ D DAN
Sbjct: 121 SGAWVALRLAVQKLLDSGAIKE--DPLTEKVAAVSCGIVNGQPVLDLDYIEDSSADADAN 178

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           FV+ + G I E Q +AE AT+ ++    +L LA+   A++   Q+  +
Sbjct: 179 FVLIEGGKIAEAQATAEGATYDEEGLLRLLRLARMGCAEIFAAQEKAV 226


>gi|227354797|ref|ZP_03839214.1| ribonuclease PH [Proteus mirabilis ATCC 29906]
 gi|227165115|gb|EEI49946.1| ribonuclease PH [Proteus mirabilis ATCC 29906]
          Length = 251

 Score =  235 bits (599), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/238 (52%), Positives = 165/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + RQ +Q+R I++TR  +K+AEGS LV+FGDT +L  AT+EE VP +++    GW+T
Sbjct: 14  MRPADRQADQVRPITITRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+Q GR+ EIQR+I R+LR+ VDL ALG   I +DCDVIQ
Sbjct: 74  AEYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKALGEFTITVDCDVIQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  M     K + S  LK  VAA+S G++ G P+ DL+Y 
Sbjct: 134 ADGGTRTASISGACVALVDALNKMV-AEGKLKKSP-LKSMVAAVSVGIVDGQPLCDLEYV 191

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VM D G ++EVQG+AE A FS +   A+L LAK  +  + + QK+ +
Sbjct: 192 EDSAAETDMNVVMIDDGRMIEVQGTAEGAPFSHEELLALLALAKGGLEKIFEAQKEAL 249


>gi|85859450|ref|YP_461652.1| ribonuclease PH [Syntrophus aciditrophicus SB]
 gi|123516627|sp|Q2LTS3|RNPH_SYNAS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|85722541|gb|ABC77484.1| ribonuclease PH [Syntrophus aciditrophicus SB]
          Length = 240

 Score =  235 bits (599), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 115/245 (46%), Positives = 170/245 (69%), Gaps = 8/245 (3%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R E+++RE+ +TR   K+ +GS L++ GDT ++ TA LE KVP ++RN+  GW+T
Sbjct: 1   MRKNRRHEDELREVKITRNYLKHPQGSVLIEVGDTKVICTAALEAKVPPFLRNSGKGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP +T  R +RE+V G  GGR+ EIQR+IGR+LR+V DL +LG   + IDCDVIQ
Sbjct: 61  AEYAMLPMATQERNQRESVRGHIGGRTHEIQRLIGRSLRAVTDLDSLGENTVYIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMED---CSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           ADGGTRTA+ITG++VAL D  + M++   C      +  ++ +V+A+S G++ G  ++DL
Sbjct: 121 ADGGTRTASITGSFVALVDLFRKMKEKGICE-----TMPIRDYVSAVSVGVVDGQLLLDL 175

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +Y EDS  DVD N VMT +G  +EVQG+AER  F +D   AM+ LA   I  L ++Q+++
Sbjct: 176 EYEEDSRADVDMNVVMTGAGEFIEVQGTAERVPFGRDRLTAMVELAGRGIRKLTEVQREI 235

Query: 238 ISNEV 242
           +  ++
Sbjct: 236 LGGQI 240


>gi|325294219|ref|YP_004280733.1| ribonuclease PH [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325064667|gb|ADY72674.1| Ribonuclease PH [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 235

 Score =  235 bits (599), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 116/238 (48%), Positives = 165/238 (69%), Gaps = 7/238 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R + +T    K+AEGSCL++FGDT ++ TA++EEK+P +++ T  GWIT
Sbjct: 2   IRNDGRKIDELRPVKITVDYIKHAEGSCLIEFGDTKVICTASVEEKIPPFLKGTGQGWIT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  GR  GR+QEIQR+IGR++RS VDL+ALG   + IDCDVIQ
Sbjct: 62  AEYSMLPRATATRTIRESAKGRLTGRTQEIQRLIGRSVRSTVDLTALGEITVWIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL+  L+ ++           +K  VAA+S G++ G  ++DL+Y 
Sbjct: 122 ADGGTRTASITGAFVALYRALEKIDKLD-------AVKNFVAAVSVGIVGGEYLLDLNYE 174

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  +VD N VM D G  VE+QG+AE   FS+     +L+L +  I  LI  QK+++
Sbjct: 175 EDSIAEVDMNIVMNDVGEFVELQGTAEGKPFSRKDLEKLLSLGEKGITKLILKQKEIL 232


>gi|320010557|gb|ADW05407.1| ribonuclease PH [Streptomyces flavogriseus ATCC 33331]
          Length = 245

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 119/238 (50%), Positives = 158/238 (66%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS LV FGDT +  TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  RE+V G+ GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L G VAAIS G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAIAWAQGKKIVKHGRKPLTGTVAAISVGIVDGTPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   + D N V T  G  VEVQG+AE   F +D   A+L+LA    ADL KLQ++ ++
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEAEPFDRDELNALLDLATAGCADLAKLQEEALA 240


>gi|197286965|ref|YP_002152837.1| ribonuclease PH [Proteus mirabilis HI4320]
 gi|226736924|sp|B4F0W3|RNPH_PROMH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|194684452|emb|CAR46192.1| ribonuclease PH [Proteus mirabilis HI4320]
          Length = 238

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 124/238 (52%), Positives = 165/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + RQ +Q+R I++TR  +K+AEGS LV+FGDT +L  AT+EE VP +++    GW+T
Sbjct: 1   MRPADRQADQVRPITITRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+Q GR+ EIQR+I R+LR+ VDL ALG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKALGEFTITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  M     K + S  LK  VAA+S G++ G P+ DL+Y 
Sbjct: 121 ADGGTRTASISGACVALVDALNKMV-TEGKLKKSP-LKSMVAAVSVGIVDGQPLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VM D G ++EVQG+AE A FS +   A+L LAK  +  + + QK+ +
Sbjct: 179 EDSAAETDMNVVMIDDGRMIEVQGTAEGAPFSHEELLALLALAKGGLEKIFEAQKEAL 236


>gi|290477306|ref|YP_003470227.1| RNase PH [Xenorhabdus bovienii SS-2004]
 gi|289176660|emb|CBJ83469.1| RNase PH [Xenorhabdus bovienii SS-2004]
          Length = 242

 Score =  234 bits (598), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 118/237 (49%), Positives = 160/237 (67%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R +GR   Q+R I +TR  +K+AEGS LV+FGDT +L  A++EE +P +++    GWITA
Sbjct: 7   RPAGRTAGQVRPIKMTRHYTKHAEGSVLVEFGDTKVLCNASVEEGIPRFLKGQGQGWITA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T +R  REA  G+Q GR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQA
Sbjct: 67  EYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAI+GA VAL D L  +     K + S  +K  VAA+S G++ G  + DL+Y E
Sbjct: 127 DGGTRTAAISGACVALVDALNKLV-ADGKLKKSP-MKSMVAAVSVGIVEGEGLCDLEYVE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  + D N VM D G ++EVQG+AE   FS D   ++L+LAK+ +  +   Q+D +
Sbjct: 185 DSAAETDMNIVMMDDGRMIEVQGTAEGEPFSHDELLSLLSLAKEGLETIFAAQRDAL 241


>gi|285017590|ref|YP_003375301.1| ribonuclease ph protein [Xanthomonas albilineans GPE PC73]
 gi|283472808|emb|CBA15313.1| hypothetical ribonuclease ph protein [Xanthomonas albilineans]
          Length = 241

 Score =  234 bits (598), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 118/229 (51%), Positives = 160/229 (69%), Gaps = 4/229 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR   Q+R + + R  +++AEGS LV FGDT +L  A+++ +VP ++R    GW+TA
Sbjct: 5   RPSGRTAEQLRPVRIERAFTRHAEGSVLVSFGDTRVLCNASVDNRVPGFLRGKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T +R +REA  G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRATHSRSEREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTAAITGA+VAL D +  +     + +L + V+ G VAA+S G+  G P++DLDY 
Sbjct: 125 DGGTRTAAITGAYVALVDAVNWLR---QRGELKKPVVLGAVAAVSVGIYRGVPVLDLDYA 181

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
           EDS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  I +
Sbjct: 182 EDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLGLAERGIGE 230


>gi|149912896|ref|ZP_01901430.1| ribonuclease PH [Roseobacter sp. AzwK-3b]
 gi|149813302|gb|EDM73128.1| ribonuclease PH [Roseobacter sp. AzwK-3b]
          Length = 210

 Score =  234 bits (598), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 111/211 (52%), Positives = 155/211 (73%), Gaps = 2/211 (0%)

Query: 29  LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
           +++ GDTH+L TA+LEE+VP +++ T  GW+TAEYGMLPRST +R++REA +G+QGGR+ 
Sbjct: 1   MIRVGDTHVLCTASLEERVPPFMKGTGLGWVTAEYGMLPRSTSSRMRREATAGKQGGRTV 60

Query: 89  EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
           EIQR+IGR+LR+ VD  ALG RQI +DCDVIQADGGTR AAITG W+AL   +  +    
Sbjct: 61  EIQRLIGRSLRAGVDRVALGERQITVDCDVIQADGGTRCAAITGGWIALRLAVNKLMKAG 120

Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
           +   +S  L   VAA+SCG+  G P++DLDY EDS   VD NF+MT S  ++EVQ SAE 
Sbjct: 121 DV--ISDPLVDPVAAVSCGIYAGQPVLDLDYPEDSEAGVDGNFIMTGSKRLIEVQMSAEG 178

Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +T+S+D    +++LA+  +A+L+  QK  ++
Sbjct: 179 STYSRDQMNLLMDLAEKGVAELVAAQKAAVN 209


>gi|258592582|emb|CBE68891.1| RNase PH [NC10 bacterium 'Dutch sediment']
          Length = 258

 Score =  234 bits (598), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 117/242 (48%), Positives = 166/242 (68%), Gaps = 2/242 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R + + R   ++AEGS L++ G+T +L TAT+EEKVP ++R T  GW+T
Sbjct: 14  VRSDGRKIDEIRPVKVDRGYLRHAEGSLLIEVGETRVLCTATVEEKVPPFLRATGQGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  RE+ +GR  GR+ EIQR+IGR+LR+V+DL+ LG R ++IDCDVIQ
Sbjct: 74  AEYGMLPRATKTRTPRESATGRASGRTFEIQRLIGRSLRAVIDLTRLGERTVLIDCDVIQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT AITGA+VA+ D L  +++  N      +LK  VA IS G + G  ++DL+Y 
Sbjct: 134 ADGGTRTTAITGAFVAMADALSRLQE--NGQLKGPLLKDFVAGISIGYVDGELLLDLNYA 191

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  DVD N VMT +   VEVQG+AE   + +     ML+LA   I  L+ LQ+ ++  
Sbjct: 192 EDSMADVDMNVVMTGARKFVEVQGTAEEVPYDKAQLDRMLDLATRGIDQLVDLQRQLLGT 251

Query: 241 EV 242
           ++
Sbjct: 252 DI 253


>gi|304317496|ref|YP_003852641.1| ribonuclease PH [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302778998|gb|ADL69557.1| ribonuclease PH [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 259

 Score =  234 bits (598), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 115/240 (47%), Positives = 167/240 (69%), Gaps = 4/240 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I +TR  ++YAEGS L++ G+T ++ TA++E+KVP + + T  GWIT+
Sbjct: 3   RVDGRDPKSLRPIKITRNFNRYAEGSVLIEVGNTKVICTASIEDKVPPFQKGTGKGWITS 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY M+PR+T  R +RE+  G+Q GR+ EIQR+IGRALR+VVDL ALG + I IDCDVIQA
Sbjct: 63  EYSMIPRATETRTQRESTKGKQSGRTMEIQRLIGRALRAVVDLDALGEKTIWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTA+ITG++VAL D +  +     K  +S++ +K  VAA+S G++    ++DL Y 
Sbjct: 123 DGGTRTASITGSFVALVDAMNKL---LQKGVISKMPIKSFVAAVSVGIVGDNKLLDLCYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED    VD N VMTD G  +E+QG+ E   FS+D F  +L LA+D +  +I++QK+ + +
Sbjct: 180 EDCNAHVDMNIVMTDKGEFIEIQGTGEGGPFSKDDFTELLGLAEDGLNKIIEIQKEALGD 239


>gi|330991184|ref|ZP_08315137.1| Ribonuclease PH [Gluconacetobacter sp. SXCC-1]
 gi|329761770|gb|EGG78261.1| Ribonuclease PH [Gluconacetobacter sp. SXCC-1]
          Length = 253

 Score =  234 bits (598), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 114/238 (47%), Positives = 159/238 (66%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  + +R + +    +++AEGS L++ G T +L  A++E +VP ++R    GW+T
Sbjct: 12  MRPSGRATDALRPVFIQTGFARHAEGSALIRMGGTEVLCAASVETRVPSFLRGKGQGWVT 71

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  GRQ GR+QEIQR+I R+LR+V DL ALG   I +DCDV+ 
Sbjct: 72  AEYGMLPRATHSRGPREAAKGRQSGRTQEIQRLIARSLRAVTDLRALGEISITVDCDVLN 131

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR AAITGAWVAL   L+ +        +   LKG VAA+SCG+     ++DLDY 
Sbjct: 132 ADGGTRCAAITGAWVALRLALETLVRAGTLPAVP--LKGQVAAVSCGLTQEGAVLDLDYA 189

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDST   D+NFV+T  G IVE+QG+AE+  F++  F  ++ LA+   A+L ++Q   +
Sbjct: 190 EDSTARADSNFVLTADGGIVEIQGTAEQDPFTEAQFNTLMRLARTGTAELFRIQTATV 247


>gi|317050112|ref|YP_004117760.1| ribonuclease PH [Pantoea sp. At-9b]
 gi|316951729|gb|ADU71204.1| ribonuclease PH [Pantoea sp. At-9b]
          Length = 238

 Score =  234 bits (598), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 125/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FG+T +L TAT++E VP +++    GW+T
Sbjct: 1   MRPAGRHTNQVRPVTLTRHYTKHAEGSVLVEFGETKVLCTATVDEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+I R+LR+ VDL ALG   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMAREAAKGKQGGRTLEIQRLIARSLRAAVDLQALGEYTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   ++    S  LKG VAAIS G++ G    DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKL--VADGKLKSSPLKGMVAAISVGIVEGEARCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +    +L LA+  I  LI  QK  +++
Sbjct: 179 EDSAAETDMNVVMLEDGRMIEVQGTAEGEPFSHEELLELLALARGGIEQLIVAQKAALAD 238


>gi|149908596|ref|ZP_01897258.1| putative ribonuclease PH [Moritella sp. PE36]
 gi|149808430|gb|EDM68367.1| putative ribonuclease PH [Moritella sp. PE36]
          Length = 243

 Score =  234 bits (597), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 121/242 (50%), Positives = 162/242 (66%), Gaps = 2/242 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q+R +++TR  +  AEGS LV+FG T +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPSQRTLGQVRPVTITRNFTANAEGSVLVEFGGTKVLCTATVEKGVPRFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+ EIQR+I R+LR+ +DL +LG   IIIDCDVIQ
Sbjct: 61  AEYGMLPRSTHKRMHREAARGQQTGRTMEIQRLIARSLRACIDLESLGEHTIIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D ++ +     K  +S + K  +AA+S G+  G  + DLDY 
Sbjct: 121 ADGGTRTAAITGACVALADAIEFLIR-KGKLTVSPI-KFMIAAVSVGIYKGEAVCDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT++G  +E+QG+AE   FS +    ML LAKD I  +I  QK  + +
Sbjct: 179 EDSDAETDMNVVMTETGKFIEIQGTAEGVPFSHEEMLDMLALAKDGIEMIIIEQKKALGD 238

Query: 241 EV 242
            +
Sbjct: 239 SL 240


>gi|220932375|ref|YP_002509283.1| ribonuclease PH [Halothermothrix orenii H 168]
 gi|219993685|gb|ACL70288.1| ribonuclease PH [Halothermothrix orenii H 168]
          Length = 246

 Score =  234 bits (597), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 113/235 (48%), Positives = 163/235 (69%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR+ +Q+R++ ++R+ +KYAEGS L++ GDT ++ TA++EE VP ++R    GW+T
Sbjct: 7   LRVDGRKNDQLRDVKISRQYTKYAEGSVLIETGDTKVICTASVEESVPPFLRGQNTGWLT 66

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY +LPRST +R  RE   GR  GR+QEIQR+IGR+LR+VVDL  LG R I +DCDVIQ
Sbjct: 67  AEYSLLPRSTHSRTIREVARGRLSGRTQEIQRLIGRSLRAVVDLGKLGERTIWVDCDVIQ 126

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D + ++            L   +AA S G++ G  ++DL Y 
Sbjct: 127 ADGGTRTASITGAYVALVDAINYL--IEEGVLEESPLNSFMAATSVGVVDGEMLLDLCYE 184

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           ED    VD N VMT+ G ++E+QG+AE+  FS+D    +++LA+  I +L+  QK
Sbjct: 185 EDFQAQVDMNIVMTEDGRVIEIQGTAEKFPFSRDQMNTLMDLAEKGIRELVSFQK 239


>gi|302390319|ref|YP_003826140.1| RNAse PH [Thermosediminibacter oceani DSM 16646]
 gi|302200947|gb|ADL08517.1| RNAse PH [Thermosediminibacter oceani DSM 16646]
          Length = 252

 Score =  234 bits (597), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 119/241 (49%), Positives = 170/241 (70%), Gaps = 4/241 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ +++R +++ RR +KYAEGS L++ GDT ++ TAT++EKVP ++R    GW+TA
Sbjct: 3   RADGREFDEIRPVNIIRRFNKYAEGSVLIEAGDTKVICTATVDEKVPPFLRGKGQGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE++  +  GR+ EIQR+IGRA+RSVVDL+ALG R + +DCDVIQA
Sbjct: 63  EYSMLPRATEIRNIRESL--KPSGRTMEIQRLIGRAMRSVVDLAALGERTVWLDCDVIQA 120

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D  ++++D  N       +   VAA+S G++ G  ++DL++ E
Sbjct: 121 DGGTRTAAITGAFVALVDAFKYLKD--NGIIEVIPVNSFVAAVSVGIVDGEKLLDLNFEE 178

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D    VD N VMTD G +VEVQG+ E   F++     ML+LA+  + +LI +QK V+S+ 
Sbjct: 179 DCRAQVDMNVVMTDKGQLVEVQGTGEAFPFTRQDLNDMLDLAQKGVFELISIQKQVLSDV 238

Query: 242 V 242
           V
Sbjct: 239 V 239


>gi|163856581|ref|YP_001630879.1| ribonuclease PH [Bordetella petrii DSM 12804]
 gi|163260309|emb|CAP42611.1| ribonuclease PH [Bordetella petrii]
          Length = 246

 Score =  234 bits (596), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 123/242 (50%), Positives = 168/242 (69%), Gaps = 10/242 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R  SL R  ++YAEGS LV+ G+TH+L TA++ +KVP +++    GW+TA
Sbjct: 11  RPSGRAVDQLRPFSLQRGYTRYAEGSVLVRAGNTHVLCTASVLDKVPPFLKGRGEGWVTA 70

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V D+ ALG R + +DCDV+QA
Sbjct: 71  EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMKALGERTLHLDCDVLQA 130

Query: 122 DGGTRTAAITGAWVALHD----CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           DGGTR A+ITGAWVA  D     +Q  +  +N       ++  VAA+S GM+ G P++DL
Sbjct: 131 DGGTRCASITGAWVAAADAVALLMQRGDLAANP------IRDAVAAVSVGMVAGRPVLDL 184

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           DY EDS  D D N VMT +G  VEVQG+ E ATF++    AML LA+  IA L++ Q++ 
Sbjct: 185 DYQEDSACDADVNVVMTGAGAFVEVQGTGEGATFARSELDAMLGLAEQGIAQLVRAQREA 244

Query: 238 IS 239
           ++
Sbjct: 245 LA 246


>gi|325570405|ref|ZP_08146182.1| ribonuclease PH/Ham1 protein [Enterococcus casseliflavus ATCC
           12755]
 gi|325156615|gb|EGC68792.1| ribonuclease PH/Ham1 protein [Enterococcus casseliflavus ATCC
           12755]
          Length = 450

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 117/239 (48%), Positives = 161/239 (67%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+E  +R +++   V K+ EGS ++ FGDT ++ +AT+E++VP ++R+T  GWIT
Sbjct: 1   MRHDGRKETMLRPVNIQTNVYKHPEGSVVISFGDTTVICSATIEDRVPPFLRDTGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+I R+LR+VVDL  LG R I++DCDV+Q
Sbjct: 61  AEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDCDVVQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   +  +    +K      +K H+AAIS G+L  G  + DLDY
Sbjct: 121 ADGGTRTASITGAFVALRLAIDTL--LRDKALTEDPIKEHLAAISVGILPDGTCVTDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS+  VD N VMT+SG  VE+QG+ E ATF       ML   K  I +LI  QK+ +
Sbjct: 179 QEDSSAAVDMNLVMTESGRFVELQGTGEEATFDGQQLNEMLIYGKTAIEELIAYQKEAL 237


>gi|262038518|ref|ZP_06011887.1| tRNA nucleotidyltransferase [Leptotrichia goodfellowii F0264]
 gi|261747387|gb|EEY34857.1| tRNA nucleotidyltransferase [Leptotrichia goodfellowii F0264]
          Length = 230

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 112/234 (47%), Positives = 161/234 (68%), Gaps = 5/234 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR++ R+ ++MRE+ +T+    + EGS L++FG+T ++  AT+EEKVP ++R T  GWIT
Sbjct: 1   MRVN-RKNDEMREVKVTKNYIMHPEGSVLIEFGNTKVICNATVEEKVPPFLRGTNSGWIT 59

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T NRV+REA  GR  GR+ EIQR+IGRALR+ V+L  LG R +IIDCDVIQ
Sbjct: 60  AEYSMLPRATNNRVQREANKGRLSGRTMEIQRLIGRALRAAVNLEKLGERTVIIDCDVIQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITG ++AL   ++ + D   K +L+++ +   VAA+S G +    ++DL+Y
Sbjct: 120 ADGGTRTASITGGYLALELAIEKLID---KGKLNEIPINSRVAAVSVGKIKNEILLDLEY 176

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
            ED   DVD N +M D G  +E+QG+ E ATF+Q+     + ++K     L  L
Sbjct: 177 EEDFRADVDMNIIMNDKGEFIELQGTGEEATFTQEELLKFIEISKKGFEKLFNL 230


>gi|238918030|ref|YP_002931544.1| ribonuclease PH, [Edwardsiella ictaluri 93-146]
 gi|259494120|sp|C5B9C9|RNPH_EDWI9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|238867598|gb|ACR67309.1| ribonuclease PH, putative [Edwardsiella ictaluri 93-146]
          Length = 238

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 123/240 (51%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR   Q+R + LTR  +K+AEGS LV+FGDT +L TA+++E VP +++    GW+T
Sbjct: 1   MRPEGRAAGQIRPLRLTRHYTKHAEGSVLVEFGDTKVLCTASVDEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMAREAAKGKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   + K + S  LKG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALGALV-AAGKLKESP-LKGMVAAVSVGIVAGGAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +    +L LA+D I  +I+ QK  +  
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARDGIGQIIQAQKTALEQ 238


>gi|256372516|ref|YP_003110340.1| ribonuclease PH [Acidimicrobium ferrooxidans DSM 10331]
 gi|256009100|gb|ACU54667.1| ribonuclease PH [Acidimicrobium ferrooxidans DSM 10331]
          Length = 238

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 115/231 (49%), Positives = 155/231 (67%), Gaps = 2/231 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   ++R +++T   ++ A GS L++ G T +L T +LEE+VP W+R    GW++A
Sbjct: 4   RPVGRGAAELRPVAITPDFTEMAPGSVLMRMGRTAVLCTVSLEERVPAWLRGQGRGWVSA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP ST  R  REAV GRQ GR+ EIQR+IGRALRSVVDL  LG  Q+++DCDV+QA
Sbjct: 64  EYALLPGSTPTRTAREAVRGRQQGRTVEIQRLIGRALRSVVDLERLGEHQLVVDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITG ++AL   L+ +            L G +AA+S G++ G P++DLDY E
Sbjct: 124 DGGTRTAAITGGFLALERALERL--AEGGLVQPAALTGRLAAVSVGVVDGEPLLDLDYDE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           DS  DVD N VMTD G  VEVQG+AE A F++     +L LA+  I +L++
Sbjct: 182 DSRADVDMNVVMTDGGRYVEVQGAAEGAPFAKATLVELLKLAERGIGELLE 232


>gi|114798422|ref|YP_761988.1| ribonuclease PH [Hyphomonas neptunium ATCC 15444]
 gi|114738596|gb|ABI76721.1| ribonuclease PH [Hyphomonas neptunium ATCC 15444]
          Length = 241

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 117/238 (49%), Positives = 159/238 (66%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R +GR  +++R ISL   V++YAEGSCL KFG TH+L TA+ E+ VP W++    GW+T
Sbjct: 5   VRPTGRAFDELRPISLETSVTRYAEGSCLAKFGHTHVLCTASWEKGVPGWLKGKGEGWVT 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            EYGMLPR+T  R +REA +G+Q GR+QEIQR+IGR+LRSVVDL ALG   I IDCDVIQ
Sbjct: 65  GEYGMLPRATHTRGRREAAAGKQSGRTQEIQRLIGRSLRSVVDLKALGENTITIDCDVIQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +VAL    ++++      + S + K   AAIS G+   +P++D+DY 
Sbjct: 125 ADGGTRTASITGGFVALAMACRYLQ-TEGVIKASPIQK-QAAAISVGLFQNHPVLDVDYP 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VM+  G  +EVQG+ E    S+     M+ LA+    +L   Q+  I
Sbjct: 183 EDSEGEADMNVVMSSDGGFIEVQGTGESRPMSRTELDEMMRLAEKGCNELFAAQRAAI 240


>gi|15603741|ref|NP_246815.1| ribonuclease PH [Pasteurella multocida subsp. multocida str. Pm70]
 gi|21759412|sp|Q9CJW5|RNPH_PASMU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|12722306|gb|AAK03960.1| Rph [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 238

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 117/213 (54%), Positives = 151/213 (70%), Gaps = 2/213 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  NQ R I +TR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GW+T
Sbjct: 1   MRPNERANNQPRPIKITRHYTKHAEGSVLVEFGDTKVLCTATVEESVPRFLKGQNQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERSITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +    N       +K  VAAIS G++ G P+ DL+Y 
Sbjct: 121 ADGGTRTASITGACVALCDAIHGL--VENGTLKVNPIKSLVAAISVGIVEGVPVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
           EDS  + D N VM + G ++EVQG+AE   FS 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSH 211


>gi|210632429|ref|ZP_03297357.1| hypothetical protein COLSTE_01253 [Collinsella stercoris DSM 13279]
 gi|210159524|gb|EEA90495.1| hypothetical protein COLSTE_01253 [Collinsella stercoris DSM 13279]
          Length = 244

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 118/234 (50%), Positives = 159/234 (67%), Gaps = 4/234 (1%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  + MR ++LTR V K A GSCLV+FGDT +L  AT+EE VP W + ++ GW+TAEY M
Sbjct: 12  RAADAMRPVNLTRDVMKNALGSCLVEFGDTKVLCAATIEEGVPGWRKASRQGWVTAEYAM 71

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST  R +RE  +  + GRS EI+R+IGR+LR+VV++ ALG   + +DCDVIQADGGT
Sbjct: 72  LPASTNRRTRRE--TSNRKGRSMEIERLIGRSLRTVVNMKALGEHTVTVDCDVIQADGGT 129

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTA+ITGAWVALHD L    +     +L   L G VAA+S G++ G  ++DLDY EDS  
Sbjct: 130 RTASITGAWVALHDALMAWVEAGKISRLP--LTGQVAAVSMGLVDGCELLDLDYAEDSHA 187

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +VD N V TD+G I+E+QG+ E+  F +     +L+L +  I  LI LQ +V +
Sbjct: 188 EVDMNLVATDAGEIIEIQGTGEQTPFDRARLNRLLDLGELGIKQLIDLQNEVTA 241


>gi|116626750|ref|YP_828906.1| ribonuclease PH [Candidatus Solibacter usitatus Ellin6076]
 gi|122251374|sp|Q01NZ9|RNPH_SOLUE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|116229912|gb|ABJ88621.1| RNAse PH [Candidatus Solibacter usitatus Ellin6076]
          Length = 238

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 114/238 (47%), Positives = 156/238 (65%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R   Q+R + +T      AEGS L+K G+TH+L  AT+E+ VP ++RNT  GW+T
Sbjct: 1   MRTDNRTAGQLRPVQITTGCLMTAEGSALIKVGNTHVLCAATIEDTVPPFLRNTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE   GR  GR+ EIQR+IGR++RS VD+S+ G R +IIDCDVIQ
Sbjct: 61  AEYSMLPRATAKRTPREVTKGRPSGRTHEIQRLIGRSMRSAVDMSSFGERTLIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA+    + +     +   +  ++ +VAA S G++ G P++DL Y 
Sbjct: 121 ADGGTRTASITGAFVAMALAFRQL--IEYRALKANPIRDYVAATSVGLVGGIPMLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  DVD N VMT  G  VEVQ +AE + F       +  LA+  IA L+++QK++I
Sbjct: 179 EDSQADVDMNVVMTGGGKFVEVQATAEHSAFDDAQMAELTELARTGIAQLVRMQKEII 236


>gi|332289145|ref|YP_004419997.1| ribonuclease PH [Gallibacterium anatis UMN179]
 gi|330432041|gb|AEC17100.1| ribonuclease PH [Gallibacterium anatis UMN179]
          Length = 239

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 125/242 (51%), Positives = 169/242 (69%), Gaps = 4/242 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  + MR I +TR  +K+AEGS L++FGDT +L  AT+EE VP +++    GWIT
Sbjct: 1   MRPNNRDNHAMRPIKITRHYTKHAEGSVLIEFGDTKVLCNATVEETVPRFLKGQNQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA  G+Q GR+ EIQR+IGR+LR++VDL+ LG R I +DCDVIQ
Sbjct: 61  AEYGMLPRATNVRTQREAAKGKQSGRTMEIQRLIGRSLRAMVDLTLLGERTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTAAI+G+ VALHD +Q + D   K  + Q  +K  VAA+S G++    + DL+Y
Sbjct: 121 ADGGTRTAAISGSAVALHDAIQTLLD---KGLIKQNPIKNLVAAVSVGIVEQQQLCDLEY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  + D N VMTD G ++EVQG+AE   FS D   A+L+LAK  IA + + QK  + 
Sbjct: 178 VEDSNAETDMNVVMTDDGRMIEVQGTAEGEPFSHDELLALLDLAKQGIAQINQAQKAALQ 237

Query: 240 NE 241
           ++
Sbjct: 238 DK 239


>gi|311106536|ref|YP_003979389.1| ribonuclease PH [Achromobacter xylosoxidans A8]
 gi|310761225|gb|ADP16674.1| ribonuclease PH [Achromobacter xylosoxidans A8]
          Length = 244

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 118/239 (49%), Positives = 164/239 (68%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +++R  SL R  ++YAEGS LVK G+TH+L TA++ EKVP +++    GW+TA
Sbjct: 9   RPSGRAVDELRPFSLERGFTRYAEGSVLVKAGNTHVLCTASVLEKVPPFLKGKGEGWVTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V D+ ALG R + +DCDV+QA
Sbjct: 69  EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMKALGERTLHLDCDVLQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS-QVLKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTR A+ITGAWVA  + +  +     +  L+   ++  VAA+S G++ G  ++DLDY 
Sbjct: 129 DGGTRCASITGAWVAASEAIALL---MKRGDLAVNPIRDAVAAVSVGLVQGRAVLDLDYE 185

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N +MT  G  VEVQG+ E ATF++     ML LA+  IA L++ Q+  ++
Sbjct: 186 EDSACDADVNVIMTGGGAFVEVQGTGEGATFTRAELDTMLVLAEGGIAGLVREQRAALT 244


>gi|325981263|ref|YP_004293665.1| ribonuclease PH [Nitrosomonas sp. AL212]
 gi|325530782|gb|ADZ25503.1| ribonuclease PH [Nitrosomonas sp. AL212]
          Length = 240

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 117/238 (49%), Positives = 165/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   Q+R +++ R  +K+A+GS L++ GDT ++ TA++ E+VP ++R    GW+T
Sbjct: 2   IRSHQRTPAQIRPVNIIRHYTKHADGSVLIECGDTKVICTASISEQVPPFLRGQGQGWLT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST  R++REA  G+Q GR+ EIQR+IGRALR+ VDL  LG R I +DCDVIQ
Sbjct: 62  AEYGMLPGSTNTRMQREAAKGKQSGRTMEIQRLIGRALRAAVDLKKLGERTIQLDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VALHD ++ +     +   +  +  HVAAIS G+  G  ++DLDY 
Sbjct: 122 ADGGTRTASITGAFVALHDAIEKL--IYQQLIETSPITDHVAAISVGIHQGVAMLDLDYV 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS+ D D N VMT +  I+EVQG+AE   F++     ML+LA+  I +LI +Q+ V+
Sbjct: 180 EDSSCDTDMNVVMTGNLGIIEVQGTAEGNAFNRKELDTMLDLAQQGIQELITIQRKVL 237


>gi|262377117|ref|ZP_06070342.1| ribonuclease PH [Acinetobacter lwoffii SH145]
 gi|262307855|gb|EEY88993.1| ribonuclease PH [Acinetobacter lwoffii SH145]
          Length = 238

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 120/238 (50%), Positives = 160/238 (67%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R  +Q+RE+ +TR  ++YAEGS LV+FG T +L TA+++  VP +++    GW+T
Sbjct: 1   MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASVDSSVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LRS+VDL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRSMVDLKKLGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D +  +     K      LKG VAA+S G+     ++DL Y 
Sbjct: 121 ADGGTRTAAITGAAVALVDAMNVL--LERKKIKHDPLKGLVAAVSVGIFKDEVLLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS    D N VMT +G  +E+QG+AE   F++    AML +A+  I +L+K Q++ +
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIQELVKKQQEAL 236


>gi|304310165|ref|YP_003809763.1| Ribonuclease PH [gamma proteobacterium HdN1]
 gi|301795898|emb|CBL44099.1| Ribonuclease PH [gamma proteobacterium HdN1]
          Length = 238

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 119/240 (49%), Positives = 166/240 (69%), Gaps = 4/240 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+  ++R+I++TR  + +AEGS LV+FG+T ++ TA+  E VP +++ T  GW+T
Sbjct: 1   MRPSGRKPEELRKINITRDYTCHAEGSVLVEFGNTKVICTASATEGVPRFLKGTGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHDRMDREASRGKQGGRTLEIQRLIARSLRAAVDLKLLGENTIYVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITG  VAL D L  +     K  + Q  L+  +A++S G+  G P++DLDY
Sbjct: 121 ADGGTRTASITGGCVALVDALSFL---LKKGTIKQDPLQRLIASVSVGIYKGVPVLDLDY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  + D N VMT  G +VEVQG+AE   F+++   AM+ LA+  I +L  LQ+  ++
Sbjct: 178 PEDSKAETDMNVVMTQHGGLVEVQGTAEAEPFTREQMNAMMELAEKGIGELFLLQQKALN 237


>gi|255019644|ref|ZP_05291723.1| Ribonuclease PH [Acidithiobacillus caldus ATCC 51756]
 gi|254970867|gb|EET28350.1| Ribonuclease PH [Acidithiobacillus caldus ATCC 51756]
          Length = 241

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 124/234 (52%), Positives = 155/234 (66%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR    +R + + R  +KYAEGS L+  GDT +L TA++E+KVP +++    GW+TA
Sbjct: 3   RPSGRDAQTLRPVEIIRPFTKYAEGSVLIACGDTRVLCTASIEDKVPPFLKGQGRGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R+ REA  G+ GGR+ EIQR+IGR+LR+ VDL ALG R + IDCDV+QA
Sbjct: 63  EYGMLPRSTQERMPREAAKGKIGGRTHEIQRLIGRSLRAAVDLEALGERTVWIDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA +AL D LQ +             +  VAA+S G+     I+DLDY E
Sbjct: 123 DGGTRTASITGACIALADALQGL--LQRGVLTHNPWRHWVAAVSVGIREDEAILDLDYAE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DST +VD N VMTD G  VEVQG+AE A FS      ML LA+  I  LI  QK
Sbjct: 181 DSTAEVDMNVVMTDDGRFVEVQGTAEGAAFSAARMADMLLLARRGIDRLIARQK 234


>gi|284008817|emb|CBA75581.1| ribonuclease PH [Arsenophonus nasoniae]
          Length = 237

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 120/238 (50%), Positives = 164/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R+ +Q+R I +TR+ +K+AEGS L++FGDT +L  AT++E VP +++    GWIT
Sbjct: 1   MRPENREADQVRPIKITRQYTKHAEGSVLIEFGDTKVLCNATIDEGVPRFLKGQSQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+Q GR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATNSRNIREAAKGKQTGRTMEIQRLIARSLRAAVDLKQLGEYTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+GA VAL D L  M     K + S  LK  VAA+S G++ G PI DL+Y 
Sbjct: 121 ADGGTRTAAISGACVALTDALNKMV-AEGKLKQSP-LKSMVAAVSVGIVDGKPICDLEYS 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VM D+G ++E+QG+AE   FS +   ++L+LAK+ +  +   QK+ +
Sbjct: 179 EDSVAETDMNVVMMDNGKMIEIQGTAEGEPFSHEELLSLLSLAKNGLQTIFTAQKEAL 236


>gi|258516735|ref|YP_003192957.1| ribonuclease PH [Desulfotomaculum acetoxidans DSM 771]
 gi|257780440|gb|ACV64334.1| ribonuclease PH [Desulfotomaculum acetoxidans DSM 771]
          Length = 244

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 119/241 (49%), Positives = 163/241 (67%), Gaps = 8/241 (3%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ ++MR++ +TR  +KYAEGS L++ GDTH+L TAT+E+KVP ++R    GW+TA
Sbjct: 3   RVDGRKPDEMRQVRMTRNFNKYAEGSVLIEVGDTHVLCTATVEDKVPPFLRGANKGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE   G+  GR+ EIQR+IGRALRSVV+L ALG R +++DCDV+QA
Sbjct: 63  EYAMLPRATDLRTGRE--RGKVSGRTMEIQRLIGRALRSVVNLEALGERTVLVDCDVLQA 120

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCS--NKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           DGGTRTA+ITGA+VA+ D L  +       KF     +K  +AA S G +    ++DL Y
Sbjct: 121 DGGTRTASITGAFVAMTDALYKLAVNGQIKKFP----IKEFIAATSVGRVNNEMVLDLCY 176

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  +VD N VMT     VE+QG+ E ATFS+    ++L+LA   I  LI  Q +V+ 
Sbjct: 177 KEDSAAEVDMNIVMTGGDRFVEIQGTGEEATFSRAEVNSLLDLAAGGIKSLIAFQSEVLG 236

Query: 240 N 240
           +
Sbjct: 237 S 237


>gi|206889521|ref|YP_002249186.1| ribonuclease PH [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|226736948|sp|B5YFY8|RNPH_THEYD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|206741459|gb|ACI20516.1| ribonuclease PH [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 236

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 113/233 (48%), Positives = 163/233 (69%), Gaps = 2/233 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+ +++R I + +   K A+GS L++ G+T ++ TA++E KVP ++++ K GWIT
Sbjct: 1   MRPDGRKNDELRPIKIEKNFIKNADGSVLIELGNTRVICTASIENKVPPFLKDQKKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ RE+ SGR GGR+ EIQR+IGR LR+VVDL  LG R I IDCDVI+
Sbjct: 61  AEYGMLPRSTPVRMLRESTSGRVGGRTHEIQRLIGRTLRAVVDLEKLGERTIWIDCDVIE 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG ++AL + ++   +          +K  +AAIS G++ G P +DL Y 
Sbjct: 121 ADGGTRTASITGGYIALVEAVKKAMNAG--MITENPIKDSIAAISVGIVLGEPRLDLCYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           EDS  +VD N VMT SG  +E+QG+AE   FS+++   +L+LA+  I ++I++
Sbjct: 179 EDSQAEVDMNIVMTGSGKFIEIQGTAEIYPFSKENLLQLLSLAEKGIREIIRV 231


>gi|332141636|ref|YP_004427374.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype']
 gi|332143438|ref|YP_004429176.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype']
 gi|226736881|sp|B4S201|RNPH_ALTMD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|327551658|gb|AEA98376.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553460|gb|AEB00179.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype']
          Length = 237

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 117/239 (48%), Positives = 162/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R +++TR+ + +AEGS LV+FG+T +L  AT+EE VP +++    GW+T
Sbjct: 1   MRPSGRTASQIRPVTITRQYTCHAEGSVLVEFGNTKVLCNATVEEGVPRFMKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+QGGR+ EIQR+I R+LR+ +DL  LG   I +DCDVIQ
Sbjct: 61  AEYSMLPRATHTRSGREAARGKQGGRTLEIQRLIARSLRAALDLKLLGENTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L +M   S     +  LK  +AA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALTYMR--SKGIIKTNPLKHMIAALSVGIYEGTPIADLEYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G ++EVQG+AE   FS +    +L + K  + +L  +QK  ++
Sbjct: 179 EDSEAETDMNIVMTETGKLIEVQGTAEGEPFSFEELDELLKIGKHGLRELFDIQKAALA 237


>gi|169831661|ref|YP_001717643.1| ribonuclease PH [Candidatus Desulforudis audaxviator MP104C]
 gi|226736902|sp|B1I4W9|RNPH_DESAP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|169638505|gb|ACA60011.1| ribonuclease PH [Candidatus Desulforudis audaxviator MP104C]
          Length = 261

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 118/242 (48%), Positives = 165/242 (68%), Gaps = 6/242 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR   QMR + +TR  +KYAEGS L++ GDT ++ TA+++ +VP +++    GW+T
Sbjct: 2   IRVDGRAPAQMRPVYITRHYNKYAEGSALIEVGDTRVICTASIDNRVPTFLKGAGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AE+GMLPR+TG R  RE+V G  GGRS EIQR+IGR+LR+VVDL ALG R +I+DCDVIQ
Sbjct: 62  AEFGMLPRATGVRGIRESVKGHPGGRSLEIQRLIGRSLRAVVDLPALGERTVILDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ADGGTRTAAITG +VAL D +Q +  E  + +  +      +VAA S G+  G  ++DL 
Sbjct: 122 ADGGTRTAAITGGFVALVDAMQTLVTEGVTPRLPVLD----YVAATSVGLFEGEAVLDLC 177

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           + EDS  +VD N VMT +G  VEVQG+ E  TF +     +L+LA   I  L++ Q+ V+
Sbjct: 178 FAEDSAAEVDFNVVMTGTGRFVEVQGTGEGTTFERADVDRLLDLAVVGIRSLVEQQRAVL 237

Query: 239 SN 240
            +
Sbjct: 238 GS 239


>gi|190575702|ref|YP_001973547.1| ribonuclease PH [Stenotrophomonas maltophilia K279a]
 gi|226736944|sp|B2FT17|RNPH_STRMK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|190013624|emb|CAQ47259.1| putative ribonuclease PH [Stenotrophomonas maltophilia K279a]
          Length = 241

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 117/228 (51%), Positives = 159/228 (69%), Gaps = 2/228 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGRQ +Q+R + + R  +++AEGS LV FG+T +L TA++E +VP ++R    GW+TA
Sbjct: 5   RPSGRQPDQLRPVVIQRGFTRHAEGSVLVCFGETRVLCTASVENRVPGFLRGKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+QGGR+ EIQR+IGR+LR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRATHTRSDREAARGKQGGRTLEIQRLIGRSLRACVDRNALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +       + + +L G VAA+S G+  G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALVDAVNVLMK-RGDIKRNPIL-GAVAAVSVGVYRGTPVLDLDYAE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
           DS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  + +
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLGLAEKGVGE 230


>gi|61215919|sp|Q6FFX5|RNPH_ACIAD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
          Length = 238

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MRL  R  +Q+R++ +TR  ++YAEGS LV+FG T +L TA+++  VP +++    GW+T
Sbjct: 1   MRLDQRALDQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR++VDL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTAAITGA VAL D +  + +   K ++ Q  LKG VAAIS G+     ++DL Y
Sbjct: 121 ADGGTRTAAITGAAVALIDAMNVLLE---KKKIKQDPLKGLVAAISVGIYQDEVLLDLCY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS    D N VMT +G  +E+QG+AE   F++    AML +A+  I +LIK Q+  +
Sbjct: 178 EEDSNCQTDLNVVMTQAGEFIEIQGTAEEKPFTRTQANAMLEVAEKGIQELIKKQQQAL 236


>gi|114564986|ref|YP_752500.1| ribonuclease PH [Shewanella frigidimarina NCIMB 400]
 gi|122298386|sp|Q07WF3|RNPH_SHEFN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|114336279|gb|ABI73661.1| RNAse PH [Shewanella frigidimarina NCIMB 400]
          Length = 237

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 123/239 (51%), Positives = 161/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q R I++TR  + +AEGS LV+FGDT +L TA+  E VP +++    GW+T
Sbjct: 1   MRPSNRTPAQTRPITITRSFTAHAEGSVLVEFGDTKVLCTASFTEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+Q GR+QEIQR+IGRALR+ VD+  LG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRAAVDMKLLGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D L            +  LK  +AA+S G+  G  I DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGIIKANPLKFLIAAVSVGIYKGEAISDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G I+E+QG+AE   FS +    +L LAK+ I +++ +QK  +S
Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLELLVLAKNSIREIVDVQKAALS 237


>gi|302037201|ref|YP_003797523.1| ribonuclease PH [Candidatus Nitrospira defluvii]
 gi|300605265|emb|CBK41598.1| Ribonuclease PH [Candidatus Nitrospira defluvii]
          Length = 247

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 119/241 (49%), Positives = 168/241 (69%), Gaps = 6/241 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R + +TR  +K+AEGS L++ GDT ++ TA++EEKVP +++    GW+TA
Sbjct: 9   RIDGRRRDQIRPVKVTRNFTKHAEGSVLIEMGDTKVICTASIEEKVPPFLKGKGAGWVTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T +R  RE+V G+QGGR+ EIQR++GRALR+V+D   LG R I IDCDVIQA
Sbjct: 69  EYAMLPRATHDRSPRESVKGKQGGRTLEIQRLVGRALRAVIDTGRLGERTIWIDCDVIQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV--LKGHVAAISCGMLCGYPIVDLDY 179
           DGGTRTA+ITG+++AL D +  +     K  L +V  L  ++AAIS G + G  +VDL Y
Sbjct: 129 DGGTRTASITGSFIALADAVGVL----RKKDLIKVNPLTDYLAAISIGKVGGQVMVDLAY 184

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  +VD N VMT +G  VEVQG+AE+  F++      L+L    I +L+ LQK +I 
Sbjct: 185 EEDSHAEVDLNLVMTGAGQYVEVQGTAEKTPFNKKDMDEFLDLGWGAIRELVDLQKSLIG 244

Query: 240 N 240
           +
Sbjct: 245 S 245


>gi|33151538|ref|NP_872891.1| ribonuclease PH [Haemophilus ducreyi 35000HP]
 gi|61216021|sp|Q7VP10|RNPH_HAEDU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|33147758|gb|AAP95280.1| ribonuclease PH [Haemophilus ducreyi 35000HP]
          Length = 238

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ+R + +TR  ++YAEGS L++FG+T +L  A++EE VP +++  + GW+T
Sbjct: 1   MRPNHRENNQIRPVKITRHYTRYAEGSVLIEFGETKVLCNASIEESVPRFLKGQQQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+Q GR+ EIQR+I RALR+VVDL ALG R I IDCDVIQ
Sbjct: 61  AEYGMLPRATHSRNQREAAKGKQSGRTMEIQRLIARALRAVVDLEALGERTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D +  +   ++    +  LKG VAAIS G++    + DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALQDAIHKL--IADGVLKTNPLKGLVAAISVGIVENEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  + D N VM + G +VEVQG+AE   FS      +L+LA   I  L ++Q+  ++
Sbjct: 179 EDAKAETDMNVVMVEDGRLVEVQGTAEGKPFSHMELLQLLDLADQGINQLFEVQRQALA 237


>gi|257866170|ref|ZP_05645823.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC30]
 gi|257872500|ref|ZP_05652153.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC10]
 gi|257800104|gb|EEV29156.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC30]
 gi|257806664|gb|EEV35486.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC10]
          Length = 450

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 116/239 (48%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+E  +R + +   V K+ EGS ++ FGDT ++ +AT+E++VP ++R+T  GW+T
Sbjct: 1   MRHDGRKETMLRPVKIQTNVYKHPEGSVVISFGDTTVICSATIEDRVPPFLRDTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+I R+LR+VVDL  LG R I++DCDV+Q
Sbjct: 61  AEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDCDVVQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   +  +    +K      +K H+AAIS G+L  G  + DLDY
Sbjct: 121 ADGGTRTASITGAFVALRLAIDTL--LRDKALTEDPIKEHLAAISVGILPDGTCVTDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS+  VD N VMT+SG  VE+QG+ E ATF       ML   K  I +LI  QK+ +
Sbjct: 179 QEDSSAAVDMNLVMTESGRFVELQGTGEEATFDGQQLNEMLIYGKTAIEELIAYQKEAL 237


>gi|288573194|ref|ZP_06391551.1| ribonuclease PH [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568935|gb|EFC90492.1| ribonuclease PH [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 257

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 119/234 (50%), Positives = 160/234 (68%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR    MR++S  R  S YAEGSCLV FG T +L TA++EEKVP ++R +  GW+TA
Sbjct: 10  RADGRSGYDMRKVSFQRGFSCYAEGSCLVSFGKTKVLCTASVEEKVPPFLRGSDRGWVTA 69

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LPRST  RV R+   G+  GRS EIQR++GR+LR+ VD+ +LG R I IDCDV+QA
Sbjct: 70  EYSLLPRSTSTRVPRDISRGKLNGRSSEIQRLVGRSLRAAVDMESLGERTIWIDCDVLQA 129

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR+AA+TG +VAL D L+H+     K + S  L+ +VAA+S G + G  + DL Y E
Sbjct: 130 DGGTRSAAVTGGFVALVDALRHLWRI-GKLK-SIPLRSYVAAVSVGKISGKLLTDLCYDE 187

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  +VD N VM   G ++E+QG+ E+ TFS+D    ML+LA   + +LI LQ+
Sbjct: 188 DSRAEVDMNVVMDGLGRLIEIQGTGEKDTFSRDEMNGMLDLAFRSVEELIVLQE 241


>gi|332284454|ref|YP_004416365.1| ribonuclease PH [Pusillimonas sp. T7-7]
 gi|330428407|gb|AEC19741.1| ribonuclease PH [Pusillimonas sp. T7-7]
          Length = 271

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 118/238 (49%), Positives = 162/238 (68%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RLSGR  +++R + +    +++AEGS L+K GDTH+L  A++ EKVP +++    GW+TA
Sbjct: 36  RLSGRAASELRPVVIETGYTRHAEGSVLIKAGDTHVLCNASVLEKVPPFLKGKSQGWVTA 95

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR+V DL+ALG R + +DCDV+QA
Sbjct: 96  EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLTALGERTVQLDCDVLQA 155

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+ITGAWVA    ++ + +     Q    L   VAA+S G++ G  ++DLDY E
Sbjct: 156 DGGTRCASITGAWVAAALAVRGLVEQGVLAQ--SPLLDQVAAVSVGLVGGQALLDLDYTE 213

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS    D N VMT +GH VEVQG+AE  TF +     +L+LA+D I  L+  QK  ++
Sbjct: 214 DSGCGADMNIVMTGAGHFVEVQGTAEGQTFERKALDELLDLAQDGIRQLLAEQKRALA 271


>gi|254524022|ref|ZP_05136077.1| ribonuclease PH [Stenotrophomonas sp. SKA14]
 gi|219721613|gb|EED40138.1| ribonuclease PH [Stenotrophomonas sp. SKA14]
          Length = 241

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 117/223 (52%), Positives = 157/223 (70%), Gaps = 2/223 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGRQ +Q+R + + R  +++AEGS LV FG+T +L TA++E +VP ++R    GW+TA
Sbjct: 5   RPSGRQPDQLRPVVIQRGFTRHAEGSVLVCFGETRVLCTASVENRVPGFLRGKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+QGGR+ EIQR+IGR+LR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRATHTRSDREAARGKQGGRTLEIQRLIGRSLRACVDRNALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +       + + +L G VAA+S G+  G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALVDAVNVLMK-RGDIKRNPIL-GAVAAVSVGVYRGTPVLDLDYAE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           DS  D D N VM D G  +E+QG+AE   F +D   A+L LA+
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLGLAE 225


>gi|253991850|ref|YP_003043206.1| ribonuclease PH [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253783300|emb|CAQ86465.1| ribonuclease ph [Photorhabdus asymbiotica]
          Length = 237

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 119/238 (50%), Positives = 160/238 (67%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R I++TR  +K+AEGS LV+FGDT +L  A++EE VP +++    GWIT
Sbjct: 1   MRPAGRAAEQVRPITITRHYTKHAEGSVLVEFGDTKVLCNASVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRNAREAARGKQGGRTMEIQRLIARSLRAAVDLKKLGEYTVTLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  M + + K +    LK  VAA+S G++      DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALNKMVE-AGKLK-ENPLKSMVAAVSVGIVDNEGRCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VM + G ++EVQG+AE   FS D   ++L+LAK  +  +   Q+  +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELLSLLSLAKGGLETIFAAQRTAL 236


>gi|325499450|gb|EGC97309.1| ribonuclease PH [Escherichia fergusonii ECD227]
          Length = 228

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 120/230 (52%), Positives = 158/230 (68%), Gaps = 2/230 (0%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           MR ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWITAEYGMLPRST
Sbjct: 1   MRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 60

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
             R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+QADGGTRTA+I
Sbjct: 61  HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASI 120

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
           TGA VAL D L  +    N    +  +KG VAA+S G++ G  + DL+Y EDS  + D N
Sbjct: 121 TGACVALADALNKL--VENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMN 178

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 179 VVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 228


>gi|262370973|ref|ZP_06064296.1| ribonuclease PH [Acinetobacter johnsonii SH046]
 gi|262314049|gb|EEY95093.1| ribonuclease PH [Acinetobacter johnsonii SH046]
          Length = 238

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 164/239 (68%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R  +Q+R++++TR  ++YAEGS LV+FG T +L TA+++  VP +++    GW+T
Sbjct: 1   MRIDQRTLDQLRDVTITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR++VDL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTAAITGA VAL D +  + +   K ++ Q  LKG VAAIS G+     ++DL Y
Sbjct: 121 ADGGTRTAAITGAAVALIDAMNTLLE---KKKIKQDPLKGLVAAISVGIFQDEVLLDLCY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS    D N VMT +G  +E+QG+AE   F++    AML +A+  I +L+K Q+  +
Sbjct: 178 EEDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRVQCNAMLEMAEKGIQELVKKQQQAL 236


>gi|291278861|ref|YP_003495696.1| tRNA nucleotidyltransferase [Deferribacter desulfuricans SSM1]
 gi|290753563|dbj|BAI79940.1| tRNA nucleotidyltransferase [Deferribacter desulfuricans SSM1]
          Length = 238

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 117/235 (49%), Positives = 163/235 (69%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+ ++MR I +T    KY EGS L++FG+T ++  A++ E VP +++ T  GWIT
Sbjct: 1   MRSDGRKNDEMRLIKITTDYIKYPEGSVLIEFGETKVICNASITEGVPPFLKGTGTGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+  GR+QEI R+IGRALRSVVD+S LG R ++IDCDVIQ
Sbjct: 61  AEYSMLPRATHTRNVRESVKGKLSGRTQEISRLIGRALRSVVDMSVLGERTVVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+G +VAL+   + +   S + + + + K  VAA+S G+L    I+DL+Y 
Sbjct: 121 ADGGTRTASISGGFVALYSAFEKLVK-SGELEKNPI-KNFVAAVSVGVLNDDVILDLNYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDST  VD N V TDSG I+E+QG+ E + FS+D    M++ A   I ++I+ QK
Sbjct: 179 EDSTARVDMNVVATDSGEIIEIQGTGEESPFSRDVLNKMIDYAFIGINNIIEAQK 233


>gi|319943444|ref|ZP_08017726.1| tRNA nucleotidyltransferase [Lautropia mirabilis ATCC 51599]
 gi|319743259|gb|EFV95664.1| tRNA nucleotidyltransferase [Lautropia mirabilis ATCC 51599]
          Length = 253

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 123/245 (50%), Positives = 164/245 (66%), Gaps = 7/245 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  + +R +   RR +++AEGS LV FGDT +L TA++ + VP ++R    GW+TA
Sbjct: 9   RHDGRALDGLRPVRFQRRFTRHAEGSVLVSFGDTRVLCTASVLDSVPPFLRGKGQGWVTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V DL  LG R I +DCDV+QA
Sbjct: 69  EYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSLRAVTDLKRLGERTIHLDCDVLQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GYP--IVD 176
           DGGTRTAAITGAWVAL D +  +   + K   S  L+  VAAIS G++      P  ++D
Sbjct: 129 DGGTRTAAITGAWVALRDAVNGLL-AAGKLT-SDPLREAVAAISVGIVALPGAAPACVLD 186

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           LDY EDS  + D N VMT SG +VE+QG+AE A FS+     +L+LA   I +L++LQ+ 
Sbjct: 187 LDYQEDSGCETDMNVVMTASGGLVEIQGTAEGAPFSRQQASELLDLAAKGIDELVRLQRA 246

Query: 237 VISNE 241
            +  E
Sbjct: 247 ALQEE 251


>gi|189425094|ref|YP_001952271.1| ribonuclease PH [Geobacter lovleyi SZ]
 gi|226736912|sp|B3E3D2|RNPH_GEOLS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189421353|gb|ACD95751.1| ribonuclease PH [Geobacter lovleyi SZ]
          Length = 238

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 118/235 (50%), Positives = 160/235 (68%), Gaps = 2/235 (0%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
           GR  + +R I++TR   K+ EG+ LV+FGDT ++ TA++EE VP ++R    GW+TAEY 
Sbjct: 5   GRGLSDLRPITMTRHFIKHPEGAVLVEFGDTRVICTASVEESVPPFLRGKGTGWVTAEYS 64

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           MLPR+T  R  REA  G+Q GR+ EIQR+IGR+LR+V D++ LG R I +DCDVIQADGG
Sbjct: 65  MLPRATHTRSSREAAKGKQSGRTLEIQRLIGRSLRAVTDMTKLGERTIYLDCDVIQADGG 124

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
           TRTA+ITGA+VAL D +  +     K      LK  VAA+S G++ G  ++DLDY EDS+
Sbjct: 125 TRTASITGAYVALVDAVSALL-VQGKIT-GNPLKEAVAAVSVGIVDGQAVLDLDYQEDSS 182

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            +VD NFVMT SG  VEVQG+AE   F+ +   AM +LA   I  L   Q++ ++
Sbjct: 183 AEVDMNFVMTSSGRFVEVQGTAEAEPFTLEQMDAMRSLAMTGINQLFTYQQEALA 237


>gi|50083344|ref|YP_044854.1| ribonuclease PH [Acinetobacter sp. ADP1]
 gi|49529320|emb|CAG67032.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter sp. ADP1]
          Length = 251

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MRL  R  +Q+R++ +TR  ++YAEGS LV+FG T +L TA+++  VP +++    GW+T
Sbjct: 14  MRLDQRALDQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR++VDL  LG   I IDCDVIQ
Sbjct: 74  AEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTAAITGA VAL D +  + +   K ++ Q  LKG VAAIS G+     ++DL Y
Sbjct: 134 ADGGTRTAAITGAAVALIDAMNVLLE---KKKIKQDPLKGLVAAISVGIYQDEVLLDLCY 190

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS    D N VMT +G  +E+QG+AE   F++    AML +A+  I +LIK Q+  +
Sbjct: 191 EEDSNCQTDLNVVMTQAGEFIEIQGTAEEKPFTRTQANAMLEVAEKGIQELIKKQQQAL 249


>gi|157373079|ref|YP_001481068.1| ribonuclease PH [Serratia proteamaculans 568]
 gi|166991086|sp|A8GLF0|RNPH_SERP5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157324843|gb|ABV43940.1| ribonuclease PH [Serratia proteamaculans 568]
          Length = 238

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 122/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPAGRAPQQVRPLTLTRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +   +N    +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNAL--VANGKLKANPMKGLVAAVSVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS D   A+L LA+  I  + + QK  +++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELLALLALARGGIDTIFQAQKAALAD 238


>gi|237756090|ref|ZP_04584666.1| ribonuclease PH [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691740|gb|EEP60772.1| ribonuclease PH [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 257

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 118/239 (49%), Positives = 159/239 (66%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+  Q+R I +TR  + YAEGS L++FG+T ++ TA++E+KVP +++ T  GWIT
Sbjct: 1   MRPDGRKPAQLRPIKITRDFNIYAEGSVLIEFGNTKVIVTASVEDKVPPFLKGTGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR++  R  RE V G   GR+ EIQR+IGR+LR+ VDL  LG + I IDCDVIQ
Sbjct: 61  AEYSMIPRASETRSLREVVRGSPSGRTHEIQRLIGRSLRAAVDLKKLGEKTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHD-CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTR A+ITGA++A+ D C++  +    K   +  LK +VAAIS G +    ++DL+Y
Sbjct: 121 ADGGTRVASITGAFIAVADACIKLTKQNLVK---ANPLKDYVAAISIGKVRNEIVLDLNY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT  G  VE+  + E  TFSQ+ F  ML   K  I  LIK+QK+ I
Sbjct: 178 AEDSNAQVDMNLVMTGKGEFVEIGATGEENTFSQEDFNKMLEYGKSGIERLIKIQKEFI 236


>gi|206900914|ref|YP_002251052.1| ribonuclease PH [Dictyoglomus thermophilum H-6-12]
 gi|226736903|sp|B5YEU4|RNPH_DICT6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|206740017|gb|ACI19075.1| ribonuclease PH [Dictyoglomus thermophilum H-6-12]
          Length = 240

 Score =  232 bits (591), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 116/238 (48%), Positives = 161/238 (67%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+  R    +R + +TR+  KY  GS L++ G+T ++ T ++EEKVP +++ T  GW+T
Sbjct: 2   IRIDKRSNVDLRPVKITRKYLKYPLGSVLIEMGETKVICTVSMEEKVPPFLKGTNQGWLT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST  R  R+ V G   GRSQEIQR+IGR+LR+V+D S LG R I ID DVIQ
Sbjct: 62  AEYGMLPGSTPERKVRDVVKGVINGRSQEIQRLIGRSLRAVIDFSKLGERTIWIDTDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL+D L+ ++      ++   +K  VAA+S G++ G  ++DL   
Sbjct: 122 ADGGTRTAAITGAFVALYDALEKLKRDGVIKEIP--IKEFVAAVSVGIVDGEILLDLSAN 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           ED   +VD N VMT+SG  VE+QG+AE+  F+ +    MLNLAK  I  LI++QK  +
Sbjct: 180 EDMRAEVDMNVVMTESGKFVEIQGTAEKTPFTYEQLQQMLNLAKQGIMKLIEIQKKAL 237


>gi|297559365|ref|YP_003678339.1| ribonuclease PH [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296843813|gb|ADH65833.1| ribonuclease PH [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 239

 Score =  232 bits (591), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 117/238 (49%), Positives = 160/238 (67%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   Q+R +++TR   ++AEGS LV+FGDT +L  A++E+ VP W R T  GW+TA
Sbjct: 3   RPDGRVPTQLRPVTITRNWLRHAEGSVLVEFGDTRVLCAASVEDGVPRWRRGTGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  RE+V G+ GGR+ EI R++GR+LR+VVD  A+G   I +DCDV+QA
Sbjct: 63  EYAMLPRSTDTRGSRESVRGKIGGRTHEISRLVGRSLRAVVDFKAMGEHTITLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D ++ +     K + +  L G +AA+S G++ G P +DL+Y E
Sbjct: 123 DGGTRTAAITGAYVALADAMKWLRK-RRKLK-NNPLTGSLAAVSVGVVQGQPRLDLNYLE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N V+T  G  +EVQG+AE A F +D    +L+LA     +L  +QK  +S
Sbjct: 181 DSVADTDMNVVITGDGKFIEVQGTAEGAPFDRDLLNQLLDLAVSGCGELTAIQKKALS 238


>gi|302865661|ref|YP_003834298.1| ribonuclease PH [Micromonospora aurantiaca ATCC 27029]
 gi|315502225|ref|YP_004081112.1| ribonuclease ph [Micromonospora sp. L5]
 gi|302568520|gb|ADL44722.1| ribonuclease PH [Micromonospora aurantiaca ATCC 27029]
 gi|315408844|gb|ADU06961.1| ribonuclease PH [Micromonospora sp. L5]
          Length = 242

 Score =  232 bits (591), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 117/240 (48%), Positives = 163/240 (67%), Gaps = 1/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ +Q+R ++LTR  S + EGS LV+FG T +L TA++ E VP W + +  GW+TA
Sbjct: 3   RPDGRQPDQLRPVTLTRGWSTHPEGSVLVEFGATRVLCTASVTEGVPRWRKGSGLGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+ VDL ALG   I++DCDV+QA
Sbjct: 63  EYAMLPRATNTRSDRESVRGKVGGRTHEISRLIGRSLRACVDLKALGENSIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHM-EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTAAITGA+VALHD +  + E  +   ++ +V+   VAA+S G++ G P++DL Y 
Sbjct: 123 DGGTRTAAITGAYVALHDAVTWLAERKALAGKVEKVMHRSVAAVSVGVIGGEPMLDLCYA 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED T +VD N V T +G  VEVQG+ E   F++D   A+L+L      +L   Q+  +S+
Sbjct: 183 EDVTAEVDMNVVCTGTGDFVEVQGTGEAGVFARDQLDALLDLGVAGCLELADAQRKALSS 242


>gi|332686498|ref|YP_004456272.1| ribonuclease PH [Melissococcus plutonius ATCC 35311]
 gi|332370507|dbj|BAK21463.1| ribonuclease PH [Melissococcus plutonius ATCC 35311]
          Length = 453

 Score =  232 bits (591), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 115/239 (48%), Positives = 161/239 (67%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR E Q+R I++   V KY EGS ++ FGDT ++ +AT+EEKVP ++++++ GW+T
Sbjct: 2   IRNDGRGEQQLRSITIETNVFKYPEGSVVISFGDTKVICSATIEEKVPFFLKDSEKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +R++  G+  GR+ EIQR+I R+LR+VVDL  L  + IIIDCDVIQ
Sbjct: 62  AEYSMLPRATQRRNRRDSNKGKLNGRATEIQRLISRSLRAVVDLEKLTGKSIIIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDY 179
           ADGGTRTA+ITGA+VAL   ++ +            +K ++AA+S GML     I DL+Y
Sbjct: 122 ADGGTRTASITGAFVALKLAVEKL--LQQGLLTENPIKEYLAAVSVGMLSNDNCITDLNY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED+   VD N VMT++G+ VE+QG+ E ATFS +    ML   K  I +LI +QK  I
Sbjct: 180 EEDTAAKVDMNLVMTETGNFVEIQGTGEEATFSGEELNTMLFYGKQAIEELISIQKQAI 238


>gi|184200648|ref|YP_001854855.1| ribonuclease PH [Kocuria rhizophila DC2201]
 gi|183580878|dbj|BAG29349.1| ribonuclease PH [Kocuria rhizophila DC2201]
          Length = 244

 Score =  232 bits (591), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 114/240 (47%), Positives = 161/240 (67%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR   ++R I++TR  S+ AEGS L++FG T +L TA+L E VP W++    GW+T
Sbjct: 1   MRADGRSVAELRPITITRGWSEQAEGSALIEFGGTRVLCTASLTEGVPRWLKGEGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LRS++DL ALG   +++DCDV+Q
Sbjct: 61  AEYAMLPRATSTRSARESVKGKIGGRTHEISRLIGRSLRSIIDLEALGENTVVLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL + +    D     +    L   VAA+S G++ G P++DL Y 
Sbjct: 121 ADGGTRTASITGAYVALAEAINWAHDNGVLKRRVNPLTDSVAAVSVGIIDGVPMLDLPYV 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   + D N V+T SG  VEVQG+AE A F +D   A+L+LA    + L ++Q++ + +
Sbjct: 181 EDVRAETDMNVVVTGSGDFVEVQGTAEGAPFRRDELDALLDLAVAGCSQLAQIQRETLES 240


>gi|310826563|ref|YP_003958920.1| ribonuclease PH [Eubacterium limosum KIST612]
 gi|308738297|gb|ADO35957.1| ribonuclease PH [Eubacterium limosum KIST612]
          Length = 240

 Score =  231 bits (590), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 116/239 (48%), Positives = 167/239 (69%), Gaps = 6/239 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R +S+TR  ++ A+G+ L++ G+T ++ TA +E+KVP ++R  K GW+TA
Sbjct: 3   RIDGRSNECLRPVSITRHFTRNAQGAVLIEVGNTKVICTAMVEDKVPPFLRGEKKGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP STG+R  R+   G+  GR+ EIQR+IGR+LRSV+D+  LG R I IDCDVIQA
Sbjct: 63  EYEMLPSSTGSRKGRDRSRGKIDGRTVEIQRLIGRSLRSVIDMEKLGERTIWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           DGGTRTA+ITGA+VAL+D +  +  E+  +++ ++    G+VAA S G+    PI+DL Y
Sbjct: 123 DGGTRTASITGAFVALYDAVTWLMEEEIIDEWPIN----GYVAATSVGINQNEPIMDLCY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDST +VD N VMTD G IVE+QG+ E   F++D F  +L L +D +  LI +QK+ +
Sbjct: 179 EEDSTAEVDMNIVMTDEGEIVEIQGTGEERPFTRDEFQKLLALGEDGVYQLINIQKEAL 237


>gi|328955985|ref|YP_004373318.1| RNAse PH [Coriobacterium glomerans PW2]
 gi|328456309|gb|AEB07503.1| RNAse PH [Coriobacterium glomerans PW2]
          Length = 246

 Score =  231 bits (590), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 120/238 (50%), Positives = 159/238 (66%), Gaps = 4/238 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR    +R + L R V K A GSC+V+FGDT +L  AT+E+ +P W R ++ GW+TA
Sbjct: 8   RADGRGAGDLRRVRLERDVMKNALGSCMVEFGDTRVLCAATIEDGLPGWRRASRSGWVTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP STG R +RE   G++ GRSQEI+R+IGR+LR+  +L ALG   + IDCDVIQA
Sbjct: 68  EYAMLPASTGRRTRRE--FGQRRGRSQEIERLIGRSLRTATNLRALGEHTVTIDCDVIQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAA+TGAWVALHD L    + +   ++   L   VAA+S G++ G  ++DLDY E
Sbjct: 126 DGGTRTAALTGAWVALHDALAAWVEAARIPRIP--LVSQVAAVSMGLVDGNVLLDLDYAE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V T S  IVE+QG+ ER  F + H  A+L+L  + I  LI LQ +V +
Sbjct: 184 DSRAEVDMNLVCTQSREIVEIQGTGERTPFDRAHLDALLDLGFEGIERLIALQNEVTA 241


>gi|257468117|ref|ZP_05632213.1| ribonuclease PH [Fusobacterium ulcerans ATCC 49185]
 gi|317062402|ref|ZP_07926887.1| ribonuclease PH [Fusobacterium ulcerans ATCC 49185]
 gi|313688078|gb|EFS24913.1| ribonuclease PH [Fusobacterium ulcerans ATCC 49185]
          Length = 254

 Score =  231 bits (590), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 111/238 (46%), Positives = 164/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ + +REI +T+  + YAEGS L++FG+T ++ TA++ EKVP ++R    GW+T
Sbjct: 17  LREDGRKVDSLREIKITKDFNLYAEGSVLIEFGNTKVICTASVSEKVPPFMRGQGKGWLT 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+TG R +RE+  G+  GR+ EIQR+IGRALR+ VDL  LG R I IDCDVIQ
Sbjct: 77  AEYSMIPRATGERNQRESAKGKLSGRTMEIQRLIGRALRTAVDLEKLGERTITIDCDVIQ 136

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +I+G ++AL   ++ +    ++      +  +VAAIS G++ G P++DL Y 
Sbjct: 137 ADGGTRTTSISGGFIALALAVKKL--MKDRVLNVNPIVSNVAAISVGIVRGTPMLDLMYT 194

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  +VD N VM   G  VEVQG+ E AT+++     +++LA+  I ++I+LQ +VI
Sbjct: 195 EDSAAEVDMNVVMNGKGEFVEVQGTGEEATYTRKELNELIDLAEVGIKEIIRLQNEVI 252


>gi|238755573|ref|ZP_04616910.1| Ribonuclease PH [Yersinia ruckeri ATCC 29473]
 gi|238706173|gb|EEP98553.1| Ribonuclease PH [Yersinia ruckeri ATCC 29473]
          Length = 238

 Score =  231 bits (590), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 122/238 (51%), Positives = 164/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPAGRALEQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRNPREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +   +N    S  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNKL--VANGKLKSNPMKGLVAAVSVGIVKGKAMCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VM + G ++EVQG+AE   FS +   A+L LA+  I  + + Q+ V+
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIESIFQAQRAVL 236


>gi|224585533|ref|YP_002639332.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224470061|gb|ACN47891.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 228

 Score =  231 bits (590), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 120/230 (52%), Positives = 157/230 (68%), Gaps = 2/230 (0%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           MR ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWITAEYGMLPR+T
Sbjct: 1   MRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRAT 60

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
             R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDV+QADGGTRTA+I
Sbjct: 61  HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVVQADGGTRTASI 120

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
           TGA VAL D L  +   +N    +  +KG VAA+S G++ G  I DL+Y EDS  + D N
Sbjct: 121 TGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDSAAETDMN 178

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            VMT+ G I+EVQG+AE   FS +    +L LA+  I  ++  QK  + N
Sbjct: 179 VVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 228


>gi|294629581|ref|ZP_06708141.1| ribonuclease PH [Streptomyces sp. e14]
 gi|292832914|gb|EFF91263.1| ribonuclease PH [Streptomyces sp. e14]
          Length = 241

 Score =  231 bits (590), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 116/234 (49%), Positives = 155/234 (66%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS LV FGDT +L TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTRVLCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+V+D  ALG   +++DCDV+QA
Sbjct: 63  EYAMLPRATNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         Q L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAFVALADAVAWAQGKKLIKTGRQPLTGTVSAVSVGIVGGVPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D   D D N V T  G  VEVQG+AE   F++D   A+L+LA     DL  +Q+
Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVAGCTDLAAIQR 236


>gi|283458297|ref|YP_003362916.1| RNase PH [Rothia mucilaginosa DY-18]
 gi|283134331|dbj|BAI65096.1| RNase PH [Rothia mucilaginosa DY-18]
          Length = 243

 Score =  231 bits (590), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 111/239 (46%), Positives = 164/239 (68%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  N++R I++TR  S+ AEGS L++FG+T +L TA+  E VP W++    GW+TA
Sbjct: 5   REDGRALNELRPITITRGWSRNAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGKGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE++ GR GGR+ EI R+IGR+LR+V+++  LG   I++DCDV+QA
Sbjct: 65  EYAMLPRATNTRSSRESLKGRVGGRTHEISRLIGRSLRAVINMDELGENTIVLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +   ++       +  L   V+AIS G++ G P++DL Y E
Sbjct: 125 DGGTRTASITGAYVALADAISWAKEQKILPAKANPLIDSVSAISVGIIDGTPMLDLPYTE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   + D N V+T SG  VEVQG+AE A F +D   ++L+LA +  A+L ++Q++ +++
Sbjct: 185 DVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNSLLDLALEGTAELAQIQREALAH 243


>gi|217967720|ref|YP_002353226.1| ribonuclease PH [Dictyoglomus turgidum DSM 6724]
 gi|226736904|sp|B8E0G7|RNPH_DICTD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|217336819|gb|ACK42612.1| ribonuclease PH [Dictyoglomus turgidum DSM 6724]
          Length = 240

 Score =  231 bits (590), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 116/238 (48%), Positives = 161/238 (67%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+  R    +R + +TR+  KY  GS L++ G+T ++ T ++EEKVP +++ T  GW+T
Sbjct: 2   VRIDKRSNTDLRPVKITRKYLKYPLGSVLIEMGETKVICTVSMEEKVPPFLKGTNQGWLT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST  R  R+ V G   GRSQEIQR+IGR+LR+VVD S LG R I ID DVIQ
Sbjct: 62  AEYGMLPGSTPERKVRDVVKGAINGRSQEIQRLIGRSLRAVVDFSKLGERTIWIDADVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL+D L+ ++      ++   ++  VAA+S G++ G  ++DL   
Sbjct: 122 ADGGTRTAAITGAFVALYDALEKLKREGIIKEIP--IREFVAAVSVGIVDGEILLDLSAN 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           ED   +VD N VMT+SG  VE+QG+AE+  F+ +    MLNLAK  I  LI++QK  +
Sbjct: 180 EDMRAEVDMNVVMTESGKFVEIQGTAEKTPFTHEQLQHMLNLAKQGIMRLIEIQKKTL 237


>gi|332669877|ref|YP_004452885.1| ribonuclease PH [Cellulomonas fimi ATCC 484]
 gi|332338915|gb|AEE45498.1| ribonuclease PH [Cellulomonas fimi ATCC 484]
          Length = 262

 Score =  231 bits (589), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 119/235 (50%), Positives = 161/235 (68%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R ++LTRR     EGS LV+FG T +L  A+L E VP W + +  GW+T
Sbjct: 8   LRADGRRPDELRPVTLTRRFLDAGEGSVLVEFGGTKVLCVASLTEGVPRWRKGSGEGWVT 67

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V GR GGR+QEI R+IGR+LR+VVD+SALG   I++DCDV+Q
Sbjct: 68  AEYAMLPRATSTRSDRESVKGRVGGRTQEISRLIGRSLRAVVDVSALGENTIVLDCDVLQ 127

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D +   +         QVL+  VAA+S G++ G P++DL Y 
Sbjct: 128 ADGGTRTAAITGAYVALADAVAWAQQRRLVPAGRQVLRDSVAAVSVGIVDGVPVLDLPYV 187

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           ED   + D N V+T SG  VEVQG+AE A F +    ++L+LA    A+L +LQ+
Sbjct: 188 EDVRAETDMNVVVTGSGTFVEVQGTAEHAPFDRRELDSLLDLALAGTAELTRLQR 242


>gi|239917361|ref|YP_002956919.1| RNAse PH [Micrococcus luteus NCTC 2665]
 gi|281414156|ref|ZP_06245898.1| RNAse PH [Micrococcus luteus NCTC 2665]
 gi|239838568|gb|ACS30365.1| RNAse PH [Micrococcus luteus NCTC 2665]
          Length = 254

 Score =  231 bits (589), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 113/238 (47%), Positives = 162/238 (68%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R I++TR  S+ AEGS L++FG+T +L TA+  E VP W++    GW+TA
Sbjct: 10  RPDGRAVDELRPITITRGWSRQAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGTGWVTA 69

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R +RE+V GR GGR+ EI R+IGR+LR+V+DLSALG   I++DCDV+ A
Sbjct: 70  EYAMLPRATNERSQRESVKGRIGGRTHEISRLIGRSLRAVIDLSALGENTIVLDCDVLDA 129

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL + +          + + VLK  VAA+S G++ G P++DL Y E
Sbjct: 130 DGGTRTAAITGAYVALAEAVAWARREGILAKGAAVLKDSVAAVSVGIVDGVPVLDLPYVE 189

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   + D N V+T +G  VEVQG+AE A F++     +L+LA     +L ++Q + ++
Sbjct: 190 DVKAETDMNVVVTGAGEFVEVQGTAEGAPFTRAELDTLLDLALIGTGELARIQAETLA 247


>gi|270265234|ref|ZP_06193496.1| ribonuclease PH [Serratia odorifera 4Rx13]
 gi|270040868|gb|EFA13970.1| ribonuclease PH [Serratia odorifera 4Rx13]
          Length = 238

 Score =  231 bits (589), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 122/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPAGRAPQQVRPLTLTRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +   + K + +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNALV-AAGKLK-ANPMKGLVAAVSVGIVKGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS D   A+L LA+  I  + + QK  ++ 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELLALLALARGGIETIFQAQKAALAE 238


>gi|253690467|ref|YP_003019657.1| ribonuclease PH [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|259494124|sp|C6DIC7|RNPH_PECCP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|251757045|gb|ACT15121.1| ribonuclease PH [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 238

 Score =  231 bits (589), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 119/235 (50%), Positives = 161/235 (68%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R + LTR  +K+AEGS LV+FGDT +L  AT+EE VP +++    GW+T
Sbjct: 1   MRPTGRSAQQVRPLKLTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ +DL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  M   +N       +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNQM--VANGKLKKNPMKGMVAAVSVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  + D N VMT+ G ++EVQG+AE   FS +   ++L LA+  I  +++ QK
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLSLLALARGGIETIVQAQK 233


>gi|167628594|ref|YP_001679093.1| ribonuclease ph [Heliobacterium modesticaldum Ice1]
 gi|167591334|gb|ABZ83082.1| ribonuclease ph [Heliobacterium modesticaldum Ice1]
          Length = 243

 Score =  231 bits (588), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 118/239 (49%), Positives = 159/239 (66%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GRQ +Q+R + + R+   + EGS L+  G+T ++ TAT+EEKVP + + +  GW+TA
Sbjct: 3   RVDGRQADQLRPVQIQRQYLIHPEGSVLITVGNTKVICTATVEEKVPPFQKGSGKGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +RE   G+  GR+ EIQR+IGRALRSVVDL  LG R I IDCDVIQA
Sbjct: 63  EYGMLPRATGTRTQREVTRGKATGRTMEIQRLIGRALRSVVDLQRLGERTIWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D  + +    NK      +   +AA+S G + G  ++DL Y E
Sbjct: 123 DGGTRTASITGAFVALKDACRRL--LKNKQIQKDPIIEALAAVSVGKVAGELLLDLAYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D+  +VD N VMT  G  VE+QG+AE   F +D   AML LA+  I +LI+ Q   ++ 
Sbjct: 181 DAKAEVDMNVVMTAGGRFVELQGTAEGTPFGRDELDAMLRLAEKGICELIEAQNQALAE 239


>gi|78223083|ref|YP_384830.1| ribonuclease PH [Geobacter metallireducens GS-15]
 gi|123571779|sp|Q39UG9|RNPH_GEOMG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|78194338|gb|ABB32105.1| RNAse PH [Geobacter metallireducens GS-15]
          Length = 238

 Score =  231 bits (588), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 161/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+   +R I++TR   K+AEG+ LV+FGDT ++ TA++EE VP ++R    GW+T
Sbjct: 1   MRSDGREAGSLRGINITRHYIKHAEGAVLVEFGDTKVICTASVEESVPPFLRGKGTGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST  R  REA  G+ GGR+ EIQR+IGR+LR+V DL+ LG R ++IDCDVIQ
Sbjct: 61  AEYSMLPRSTHTRSSREAARGKIGGRTHEIQRLIGRSLRAVTDLTLLGERSVLIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D L  + +      L   +K  VAA+S G++ G  ++DL+Y 
Sbjct: 121 ADGGTRTASITGAYVALVDALHLLVERGVLPLLP--IKEAVAAVSVGIVDGNILLDLNYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  +VD NFVMT S   VEVQG+AE   F+ +    M   A + I  L  +Q + +S
Sbjct: 179 EDSAAEVDMNFVMTSSDRFVEVQGTAESEPFTVEQMDGMRVAAVEGIRKLFSIQNEALS 237


>gi|170728887|ref|YP_001762913.1| ribonuclease PH [Shewanella woodyi ATCC 51908]
 gi|226736940|sp|B1KL12|RNPH_SHEWM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|169814234|gb|ACA88818.1| ribonuclease PH [Shewanella woodyi ATCC 51908]
          Length = 237

 Score =  231 bits (588), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 120/239 (50%), Positives = 164/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R   Q R +++TR+ + +AEGS LV+FG+T +L TA+  E VP +++    GW+T
Sbjct: 1   MRPNDRTPAQSRPVTITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+Q GR+QEIQR+IGR+LR+ VD+ ALG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D L            +  LK  +AA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGILKNNPLKFLIAAVSVGIYKGEPICDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G ++E+QG+AE   FS +   ++L LAK  I +++ +QK  +S
Sbjct: 179 EDSEAETDMNVVMTETGKMIEIQGTAEGEPFSHEELLSLLELAKHGIREIVDVQKAALS 237


>gi|269137419|ref|YP_003294119.1| RNase PH [Edwardsiella tarda EIB202]
 gi|267983079|gb|ACY82908.1| RNase PH [Edwardsiella tarda EIB202]
 gi|304557493|gb|ADM40157.1| Ribonuclease PH [Edwardsiella tarda FL6-60]
          Length = 238

 Score =  231 bits (588), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 122/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR   Q+R + LTR  +K+AEGS LV+FGDT +L TA+++E VP +++    GW+T
Sbjct: 1   MRPEGRAAGQIRPLRLTRHYTKHAEGSVLVEFGDTKVLCTASVDEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMAREAAKGKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   + K + S  LKG VAA+S G++    + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALGALV-AAGKLKESP-LKGMVAAVSVGIVADEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +    +L LA+D I  +I+ QK  +  
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARDGIGQIIQAQKTALEQ 238


>gi|50119101|ref|YP_048268.1| ribonuclease PH [Pectobacterium atrosepticum SCRI1043]
 gi|61215912|sp|Q6DAW2|RNPH_ERWCT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|49609627|emb|CAG73060.1| ribonuclease PH [Pectobacterium atrosepticum SCRI1043]
          Length = 238

 Score =  231 bits (588), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 119/240 (49%), Positives = 163/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++ TR  +K+AEGS LV+FGDT +L  AT+EE VP +++    GW+T
Sbjct: 1   MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ +DL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  M   +N       +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNQM--VANGKLKKNPMKGMVAAVSVGIVKGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G +VEVQG+AE   FS +    +L LA+  I  +++ QK  +++
Sbjct: 179 EDSAAETDMNVVMTEDGRMVEVQGTAEGEPFSHEELLTLLALARGGIDTIVQAQKAALAD 238


>gi|251773010|gb|EES53566.1| ribonuclease PH [Leptospirillum ferrodiazotrophum]
          Length = 238

 Score =  231 bits (588), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 117/238 (49%), Positives = 161/238 (67%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR  +Q+R +S+    ++YAEGS L++ G TH+L T +LEEKVP ++++   GW+T
Sbjct: 1   MRSDGRTSDQLRTLSIDPSPNRYAEGSALIRMGFTHVLATVSLEEKVPPFLKDQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LRSVV+   +G R   IDCDVIQ
Sbjct: 61  AEYGMLPRSTHERSPREAARGKQSGRTQEIQRLIGRSLRSVVNFEKMGVRTATIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+I GA+VAL     +++           L  ++AA+S G++ G P +DL Y 
Sbjct: 121 ADGGTRCASIGGAFVALALAFSNLKKVG--VIAESPLVDYLAAVSVGIVDGEPCLDLCYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  DVD N VMT  G +VEVQG+AE  +FS+     +L+LA   I++++ LQK ++
Sbjct: 179 EDSAADVDMNVVMTGKGELVEVQGTAEHRSFSRKEMDRLLDLAWKGISEIVDLQKRLV 236


>gi|251798434|ref|YP_003013165.1| ribonuclease PH [Paenibacillus sp. JDR-2]
 gi|247546060|gb|ACT03079.1| ribonuclease PH [Paenibacillus sp. JDR-2]
          Length = 245

 Score =  231 bits (588), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 116/239 (48%), Positives = 165/239 (69%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GRQ NQ+R +++T  V+KYAEGS L++ G+T ++ TA++EE+VP +++    GWIT
Sbjct: 1   MRTDGRQPNQLRPVTITTGVNKYAEGSVLIEVGETKVICTASVEERVPPFMKGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  RE+  G+  GR+ EIQR+IGRALRS+VDL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATHSRNHRESAKGKLSGRTMEIQRLIGRALRSIVDLQALGERTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRT +ITGA+VAL  CL  +   S   Q  +  +   +A++S G++    ++DL+Y
Sbjct: 121 ADGGTRTTSITGAFVAL--CL-AVNKLSKTTQFPKYPITAFLASVSVGVIQERELLDLNY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT  G  VE+QG+ E + FS++    +L LA+  I +LI+ Q++ +
Sbjct: 178 DEDSKAKVDMNVVMTGEGKFVELQGTGEDSPFSREELNKLLELAEGGIEELIEKQREAL 236


>gi|260893784|ref|YP_003239881.1| ribonuclease PH [Ammonifex degensii KC4]
 gi|260865925|gb|ACX53031.1| ribonuclease PH [Ammonifex degensii KC4]
          Length = 258

 Score =  231 bits (588), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 117/238 (49%), Positives = 161/238 (67%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MRL GR   ++R + +    SKYAEGSCL++ GDT +L TA++++KVP +++ T  GW+T
Sbjct: 1   MRLDGRGTGELRPVKIIPGYSKYAEGSCLIEMGDTRVLCTASIDDKVPSFLKGTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  RE   GR  GR+ EIQR+IGR+LR+ VDL ALG R II+DCDV+Q
Sbjct: 61  AEYGMLPRATESRNLREVTKGRPSGRTLEIQRLIGRSLRAAVDLEALGERTIIVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG +VAL   L  + +      L   +K  VAA+S G +    ++DL + 
Sbjct: 121 ADGGTRTAAITGGFVALVYALDWLRNEGAIESLP--VKDLVAAVSVGKVKDAYLLDLTFA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  +VD N VMT  G +VEVQG+AE   F+++    ML+LA   ++ LI  Q++ +
Sbjct: 179 EDSMAEVDLNVVMTGKGELVEVQGTAEGKPFTREELNLMLDLAAQGVSVLIAKQREAL 236


>gi|289706339|ref|ZP_06502697.1| tRNA nucleotidyltransferase [Micrococcus luteus SK58]
 gi|289556834|gb|EFD50167.1| tRNA nucleotidyltransferase [Micrococcus luteus SK58]
          Length = 254

 Score =  231 bits (588), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 113/238 (47%), Positives = 162/238 (68%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R I++TR  S+ AEGS L++FG+T +L TA+  E VP W++    GW+TA
Sbjct: 10  RPDGRAVDELRPITITRGWSRQAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGTGWVTA 69

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R +RE+V GR GGR+ EI R+IGR+LR+V+DLSALG   I++DCDV+ A
Sbjct: 70  EYAMLPRATNERNQRESVKGRIGGRTHEISRLIGRSLRAVIDLSALGENTIVLDCDVLDA 129

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL + +          + + VLK  VAA+S G++ G P++DL Y E
Sbjct: 130 DGGTRTAAITGAYVALAEAVAWARREGILAKGAAVLKDSVAAVSVGIVDGVPVLDLPYVE 189

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   + D N V+T +G  VEVQG+AE A F++     +L+LA     +L ++Q + ++
Sbjct: 190 DVKAETDMNVVVTGAGEFVEVQGTAEGAPFTRAELDTLLDLALIGTGELARIQAETLA 247


>gi|126172622|ref|YP_001048771.1| ribonuclease PH [Shewanella baltica OS155]
 gi|152998920|ref|YP_001364601.1| ribonuclease PH [Shewanella baltica OS185]
 gi|160873506|ref|YP_001552822.1| ribonuclease PH [Shewanella baltica OS195]
 gi|217971601|ref|YP_002356352.1| ribonuclease PH [Shewanella baltica OS223]
 gi|304411675|ref|ZP_07393287.1| ribonuclease PH [Shewanella baltica OS183]
 gi|307306273|ref|ZP_07586018.1| ribonuclease PH [Shewanella baltica BA175]
 gi|166228316|sp|A3CZI9|RNPH_SHEB5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228317|sp|A6WI99|RNPH_SHEB8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043774|sp|A9KXZ7|RNPH_SHEB9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808600|sp|B8E4I8|RNPH_SHEB2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|125995827|gb|ABN59902.1| RNAse PH [Shewanella baltica OS155]
 gi|151363538|gb|ABS06538.1| ribonuclease PH [Shewanella baltica OS185]
 gi|160859028|gb|ABX47562.1| ribonuclease PH [Shewanella baltica OS195]
 gi|217496736|gb|ACK44929.1| ribonuclease PH [Shewanella baltica OS223]
 gi|304349863|gb|EFM14269.1| ribonuclease PH [Shewanella baltica OS183]
 gi|306911146|gb|EFN41573.1| ribonuclease PH [Shewanella baltica BA175]
 gi|315265735|gb|ADT92588.1| ribonuclease PH [Shewanella baltica OS678]
          Length = 237

 Score =  231 bits (588), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q R I++TR+ + +AEGS LV+FG+T +L TA+  E VP +++    GW+T
Sbjct: 1   MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+Q GR+QEIQR+IGRALR+ VD+ ALG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L            S  LK  +AA+S G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALNWAR--GKGIIKSNPLKFLIAAVSVGIYKGEAISDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G I+E+QG+AE   FS +    +L LAK+ I +++ +QK  ++
Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLELLALAKNSIREIVDVQKAALN 237


>gi|255066782|ref|ZP_05318637.1| tRNA nucleotidyltransferase [Neisseria sicca ATCC 29256]
 gi|255048857|gb|EET44321.1| tRNA nucleotidyltransferase [Neisseria sicca ATCC 29256]
          Length = 241

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 117/237 (49%), Positives = 169/237 (71%), Gaps = 2/237 (0%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
           + R  + +R+I +T     +A+GSCL++ G+T ++ TA+++E VP ++R    GW+TAEY
Sbjct: 7   TSRAADSLRDIKITPHFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKGQGWVTAEY 66

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           GMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR++VD+  LG RQI+IDCDVIQADG
Sbjct: 67  GMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAIVDMEKLGERQILIDCDVIQADG 126

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
           GTRTA+ITGA+VAL   +  +   S+       ++  VAA+S G++ G P++DLDY EDS
Sbjct: 127 GTRTASITGAFVALQIAVNKL--LSDDLISENPIREAVAAVSAGVVNGVPLLDLDYPEDS 184

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             D D N VMT SG I+E+QG+AE A FS D F  ++ LA+  IA+L   Q+  +S+
Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEGAPFSLDEFGKLIALAQKGIAELTAHQQAALSS 241


>gi|330466053|ref|YP_004403796.1| ribonuclease PH [Verrucosispora maris AB-18-032]
 gi|328809024|gb|AEB43196.1| ribonuclease PH [Verrucosispora maris AB-18-032]
          Length = 243

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 119/243 (48%), Positives = 162/243 (66%), Gaps = 7/243 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ +Q+R ++LTR  S + EGS LV+FG T +L TA++ E VP W R +  GW+TA
Sbjct: 3   RPDGRQPDQLRPVTLTRGWSTHPEGSVLVEFGATRVLCTASVTEGVPRWRRGSGLGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+ +DL ALG   I++DCDV+QA
Sbjct: 63  EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRAAIDLKALGENSIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS----QVLKGHVAAISCGMLCGYPIVDL 177
           DGGTRTAAITGA+VALHD +  +   + +  L+    +V+   VAAIS G++ G P +DL
Sbjct: 123 DGGTRTAAITGAYVALHDAVSWL---AARKALTGTPEKVMHRSVAAISVGVVAGEPRLDL 179

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            Y ED   +VD N V T +G  VEVQG+ E   F++D   A+L+LA     DL + Q+  
Sbjct: 180 CYDEDVAAEVDMNVVCTGAGDFVEVQGTGEAGVFARDQLDALLDLATVGCLDLAEAQRKA 239

Query: 238 ISN 240
           + +
Sbjct: 240 LGS 242


>gi|260494952|ref|ZP_05815081.1| ribonuclease PH [Fusobacterium sp. 3_1_33]
 gi|260197395|gb|EEW94913.1| ribonuclease PH [Fusobacterium sp. 3_1_33]
          Length = 434

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 160/241 (66%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T  GW+T
Sbjct: 2   LREDGRNFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVSDKVPSFLRGTGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+IGRALR+ +DL  LG R I IDCDVIQ
Sbjct: 62  AEYSMLPRATNERNPREASKGKLAGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG ++AL   ++ +     +      L  +VAAIS G +    +VDL Y 
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKL--LKEEILEENPLISNVAAISVGKVNSELMVDLKYS 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  +VD N +M   G  +EVQG+ E +TF++     +L+LA++ I  LIKLQ ++I+ 
Sbjct: 180 EDSAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIKLQDEIINQ 239

Query: 241 E 241
           E
Sbjct: 240 E 240


>gi|261405343|ref|YP_003241584.1| ribonuclease PH [Paenibacillus sp. Y412MC10]
 gi|261281806|gb|ACX63777.1| ribonuclease PH [Paenibacillus sp. Y412MC10]
          Length = 252

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 115/238 (48%), Positives = 167/238 (70%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR+ +++R ++L+  V+KYAEGS  ++ GDT +L TAT++EKVP +++    GW+T
Sbjct: 1   MRSNGRKSDELRPMNLSTHVNKYAEGSVYIEMGDTKVLITATVDEKVPPFLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R +REA  G+  GR+ EIQR+IGRALRSVV+L ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATQSRNQREANRGKLSGRTMEIQRLIGRALRSVVNLHALGERTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITGA+VAL   +  + +  +K  +  +   ++A+IS G+  G  ++DL+Y 
Sbjct: 121 ADGGTRTTSITGAFVALAIAVNKIAE-QHKLAVFPITD-YLASISVGIAGGQALLDLNYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS   VD N VMT SG  VEVQG+ E + FS++    +L L +  I +LI+ Q++ +
Sbjct: 179 EDSKAKVDMNLVMTGSGKFVEVQGTGEESPFSREELDQILELGEQGIRELIERQQEAL 236


>gi|282865124|ref|ZP_06274177.1| ribonuclease PH [Streptomyces sp. ACTE]
 gi|282560047|gb|EFB65596.1| ribonuclease PH [Streptomyces sp. ACTE]
          Length = 245

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 115/238 (48%), Positives = 157/238 (65%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS L+ FGDT +  TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  RE+V G+ GGR+ EI R+IGR+LR+V+D  ALG   +++DCDV+QA
Sbjct: 63  EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L G VAA+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGKKIVKHGRKPLTGTVAAVSVGIVDGTPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   + D N V T  G  VEVQG+AE A F +    A+L+LA     DL KLQ++ ++
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEAAPFDRSELDALLDLATAGCVDLAKLQQEALA 240


>gi|298369114|ref|ZP_06980432.1| tRNA nucleotidyltransferase [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298283117|gb|EFI24604.1| tRNA nucleotidyltransferase [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 246

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 117/235 (49%), Positives = 171/235 (72%), Gaps = 2/235 (0%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
           +GR  + +R+I +T     +A+GSCL++ G+T ++ TA+++E VP ++R  + GW+TAEY
Sbjct: 7   TGRAADSLRDIKITPHFLPHADGSCLIECGNTKVICTASVDENVPPFLRGKEQGWVTAEY 66

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           GMLP ST  R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADG
Sbjct: 67  GMLPASTATRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
           GTRTA+ITGA+VAL   ++ +   S+       ++  VAA+S G++ G P++DLDY EDS
Sbjct: 127 GTRTASITGAFVALQIAVEKL--LSDGLIGENPIREAVAAVSAGVVGGVPLLDLDYPEDS 184

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             D D N VMT SG I+E+QG+AE A FS D    ++ LA+  IA+L++ Q++ +
Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEGAPFSLDELGKLIALAQKGIAELVRHQQNAL 239


>gi|317494714|ref|ZP_07953126.1| ribonuclease PH [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917316|gb|EFV38663.1| ribonuclease PH [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 238

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 121/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR   Q+R + LTR  +K+AEGS LV+FG+T +L  AT+EE VP +++    GW+T
Sbjct: 1   MRPEGRTAEQIRPLKLTRHYTKHAEGSVLVEFGETKVLCNATVEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMAREAAKGKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   + K + +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNALV-AAGKLK-ANPMKGMVAAVSVGIVDGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +    +L LA+  I  +I+ QK  + N
Sbjct: 179 EDSAAETDMNVVMLEDGRMIEVQGTAEGEPFSHEELLQLLALARGGIDKIIQAQKAALEN 238


>gi|329925260|ref|ZP_08280203.1| tRNA nucleotidyltransferase [Paenibacillus sp. HGF5]
 gi|328940093|gb|EGG36426.1| tRNA nucleotidyltransferase [Paenibacillus sp. HGF5]
          Length = 252

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 115/238 (48%), Positives = 167/238 (70%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR+ +++R ++L+  V+KYAEGS  ++ GDT +L TAT++EKVP +++    GW+T
Sbjct: 1   MRSNGRKSDELRPMNLSTHVNKYAEGSVYIEMGDTKVLITATVDEKVPPFLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R +REA  G+  GR+ EIQR+IGRALRSVV+L ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATQSRNQREANRGKLSGRTMEIQRLIGRALRSVVNLHALGERTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITGA+VAL   +  + +  +K  +  +   ++A+IS G+  G  ++DL+Y 
Sbjct: 121 ADGGTRTTSITGAFVALAIAVNKIAE-QHKLAVFPITD-YLASISVGIAGGQALLDLNYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS   VD N VMT SG  VEVQG+ E + FS++    +L L +  I +LI+ Q++ +
Sbjct: 179 EDSKAKVDMNLVMTGSGKFVEVQGTGEESPFSREELDQILELGEQGIRELIERQQEAL 236


>gi|309378698|emb|CBX22648.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 242

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 116/236 (49%), Positives = 170/236 (72%), Gaps = 2/236 (0%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
           + R  + +R+I +T R   + +GSCL++ G+T ++ TA+++E VP ++R    GW+TAEY
Sbjct: 7   TSRAADSLRDIKITPRFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVTAEY 66

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           GMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADG
Sbjct: 67  GMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
           GTRTA+ITGA+VALH  +  +   S+       ++  VAA+S G++ G P++DLDY EDS
Sbjct: 127 GTRTASITGAFVALHIAVGKL--VSDGILTENPIREAVAAVSAGVVGGVPLLDLDYPEDS 184

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
             D D N VMT SG I+E+QG+AE A FS +    ++ LA+  I +L++ Q++ +S
Sbjct: 185 GCDSDVNIVMTTSGKIIEIQGTAEGAPFSLEELGKLIGLAEKGIGELLRYQQNALS 240


>gi|294812846|ref|ZP_06771489.1| Ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
 gi|326441376|ref|ZP_08216110.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
 gi|294325445|gb|EFG07088.1| Ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
          Length = 248

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 118/241 (48%), Positives = 154/241 (63%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS L+ FGDT +  TA++ E VP W + +  GW+T 
Sbjct: 5   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTG 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  RE+V G+ GGR+ EI R+IGR+LR+VVD  ALG   I++DCDV+QA
Sbjct: 65  EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDCKALGENTIVLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +    +        Q L   VAA+S G++ G P++DL Y E
Sbjct: 125 DGGTRTAAITGAYVALADAITWAREKKLVRAGRQPLTTTVAAVSVGIVDGTPLLDLCYEE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D   D D N V T  G  VEVQG+AE   F +    A+L+LA    ADL  LQ D ++  
Sbjct: 185 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRAELDALLDLAAGGCADLAALQNDALART 244

Query: 242 V 242
           V
Sbjct: 245 V 245


>gi|326779081|ref|ZP_08238346.1| ribonuclease PH [Streptomyces cf. griseus XylebKG-1]
 gi|326659414|gb|EGE44260.1| ribonuclease PH [Streptomyces cf. griseus XylebKG-1]
          Length = 245

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 117/239 (48%), Positives = 155/239 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS L+ FGDT +  TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  REAV G+ GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L   VAAIS G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   + D N V T  G  VEVQG+AE A F +    A+L+LA     DL  LQ+D ++ 
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRKELGALLDLATAGCVDLAALQRDALAT 241


>gi|257463721|ref|ZP_05628110.1| ribonuclease PH [Fusobacterium sp. D12]
 gi|317061266|ref|ZP_07925751.1| ribonuclease PH [Fusobacterium sp. D12]
 gi|313686942|gb|EFS23777.1| ribonuclease PH [Fusobacterium sp. D12]
          Length = 249

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 113/237 (47%), Positives = 163/237 (68%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR+ENQ+REI +TR  + +AEGS L++ G+T ++ TA++ EKVP +++NT  GW+TA
Sbjct: 3   RLDGRRENQLREIKITRDFNMHAEGSVLIESGNTKVICTASVSEKVPSFLKNTGKGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY M+PR+TG R +REA  G+  GR+ EIQR+IGRALRS VDL  LG R I +DCDVIQA
Sbjct: 63  EYCMIPRATGERTQREAAKGKLSGRTMEIQRLIGRALRSSVDLEKLGERTITLDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITG+++A+   +  +     +      +   VAA+S G      ++DL+Y E
Sbjct: 123 DGGTRTASITGSFIAMAIAVAKL--LKEEILTESPVLSRVAAVSVGKHENSILLDLNYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS+ +VD N +  D G  +EVQG+ E ATF +    A+L++A+  I  L++ QK+V+
Sbjct: 181 DSSAEVDMNVIQNDLGEYIEVQGTGEEATFCRKELNALLDMAEIGIHQLLEKQKEVL 237


>gi|160872895|ref|ZP_02063027.1| ribonuclease PH [Rickettsiella grylli]
 gi|159121694|gb|EDP47032.1| ribonuclease PH [Rickettsiella grylli]
          Length = 237

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 121/238 (50%), Positives = 158/238 (66%), Gaps = 4/238 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R I+L R  + YAEGS  V FG T +L TA++   VP +++ + HGWIT
Sbjct: 1   MRASQRALDELRAITLIRSYTNYAEGSVWVAFGQTKVLCTASIIPGVPKFLKGSNHGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GRS EIQR+IGR LR  VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRSDREASRGKQTGRSLEIQRLIGRVLRMSVDLKQLGENTIFLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D L  M+    K+     L   VAA+S G+  G  ++DLDY 
Sbjct: 121 ADGGTRTAAITGASVALKDALATMKG-EMKYNPWCFL---VAAVSVGIYKGQALLDLDYE 176

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  ++D N +MT+ G ++E+Q +AE+A FS+     +LNLA+  I   +K QK+V+
Sbjct: 177 EDSHAEMDMNVIMTEQGKLLEIQATAEKAAFSKQQLNQLLNLAETGIKQCVKKQKEVL 234


>gi|254389819|ref|ZP_05005043.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
 gi|197703530|gb|EDY49342.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
          Length = 246

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 118/241 (48%), Positives = 154/241 (63%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS L+ FGDT +  TA++ E VP W + +  GW+T 
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTG 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  RE+V G+ GGR+ EI R+IGR+LR+VVD  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDCKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +    +        Q L   VAA+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAITWAREKKLVRAGRQPLTTTVAAVSVGIVDGTPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D   D D N V T  G  VEVQG+AE   F +    A+L+LA    ADL  LQ D ++  
Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRAELDALLDLAAGGCADLAALQNDALART 242

Query: 242 V 242
           V
Sbjct: 243 V 243


>gi|255326296|ref|ZP_05367382.1| tRNA nucleotidyltransferase [Rothia mucilaginosa ATCC 25296]
 gi|255296750|gb|EET76081.1| tRNA nucleotidyltransferase [Rothia mucilaginosa ATCC 25296]
          Length = 243

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 110/239 (46%), Positives = 163/239 (68%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  N++R I++TR  S+ AEGS L++FG+T +L TA+  E VP W++    GW+TA
Sbjct: 5   REDGRALNELRPITITRGWSRNAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGKGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE++ GR GGR+ EI R+IGR+LR+V+++  LG   I++DCDV+QA
Sbjct: 65  EYAMLPRATNTRSSRESLKGRVGGRTHEISRLIGRSLRAVINMDELGENTIVLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +   ++       +  L   V+AIS G++ G P++DL Y E
Sbjct: 125 DGGTRTASITGAYVALADAISWAKEQKILPAKANPLIDSVSAISVGIIDGTPMLDLPYTE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   + D N V+T SG  VEVQG+AE   F +D   ++L+LA +  A+L ++Q++ +++
Sbjct: 185 DVRAETDMNVVVTGSGKFVEVQGTAEGVPFDRDELNSLLDLALEGTAELAQIQREALAH 243


>gi|296268927|ref|YP_003651559.1| ribonuclease PH [Thermobispora bispora DSM 43833]
 gi|296091714|gb|ADG87666.1| ribonuclease PH [Thermobispora bispora DSM 43833]
          Length = 247

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 117/242 (48%), Positives = 162/242 (66%), Gaps = 3/242 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-KVPMWIRNTKHGWIT 60
           R  GR+ +Q+R +++TR    +AEGS LV+FG T +L  AT+E   VP W + +  GW+T
Sbjct: 3   RSDGRRPDQLRPVTITRNWLAHAEGSVLVEFGATKVLCAATVEAGNVPRWRKGSGLGWVT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+TG R +RE+V G+ GGR+ EI R+IGRALR+ VD   +G   IIIDCDV+Q
Sbjct: 63  AEYAMLPRATGTRSERESVKGKIGGRTHEISRLIGRALRACVDFKVMGENSIIIDCDVLQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D +  M   +N+  L   L   V+A+S G++   P++DL Y 
Sbjct: 123 ADGGTRTAAITGAFVALADAVAWMR--ANEVCLGDPLVNSVSAVSVGIVGSEPLLDLCYE 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   + D N VMT +G  VEVQG+AE A F +D   A+L+LA    A+L ++Q + +  
Sbjct: 181 EDVVAETDMNVVMTGAGAFVEVQGTAEGAPFGRDQLNALLDLATAGCAELARIQAEALGR 240

Query: 241 EV 242
           ++
Sbjct: 241 DL 242


>gi|294783495|ref|ZP_06748819.1| ribonuclease PH/Ham1 protein [Fusobacterium sp. 1_1_41FAA]
 gi|294480373|gb|EFG28150.1| ribonuclease PH/Ham1 protein [Fusobacterium sp. 1_1_41FAA]
          Length = 435

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ N+ R+I +T+ V+ YAEGS L++ G+T ++ TA++ EKVP ++R T  GW+T
Sbjct: 2   LREDGRKFNEERKIKITKDVNIYAEGSVLIEVGNTKVICTASVSEKVPPFLRGTGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +REA  G+  GR+ EIQR+IGRALRS +DL  LG R I IDCDVIQ
Sbjct: 62  AEYSMLPRATNERNQREASKGKLTGRTVEIQRLIGRALRSAIDLEKLGERLITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG +VAL   ++ +    ++      L  +VAAIS G +    +VDL Y 
Sbjct: 122 ADGGTRTTSITGGYVALALAIKKL--LKDEILEENPLIANVAAISVGKIDSELMVDLKYS 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  +VD N +M   G  +EVQG+ E +TF++     +L+LA+  I  +I LQ  VI  
Sbjct: 180 EDSVAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNGLLDLAEASIKRIIDLQDKVIEQ 239

Query: 241 E 241
           E
Sbjct: 240 E 240


>gi|188996466|ref|YP_001930717.1| ribonuclease PH [Sulfurihydrogenibium sp. YO3AOP1]
 gi|226736945|sp|B2V890|RNPH_SULSY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|188931533|gb|ACD66163.1| ribonuclease PH [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 257

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 117/239 (48%), Positives = 158/239 (66%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+  Q+R I + R  + YAEGS L++FG+T ++ TA++E+KVP +++ T  GWIT
Sbjct: 1   MRPDGRKPAQLRPIKIIRDFNIYAEGSVLIEFGNTKVIVTASVEDKVPPFLKGTGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR++  R  RE V G   GR+ EIQR+IGR+LR+ VDL  LG + I IDCDVIQ
Sbjct: 61  AEYSMIPRASETRSLREVVRGSPSGRTHEIQRLIGRSLRAAVDLKKLGEKTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHD-CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTR A+ITGA++A+ D C++  +    K   +  LK +VAAIS G +    ++DL+Y
Sbjct: 121 ADGGTRVASITGAFIAVADACIKLTKQNLVK---ANPLKDYVAAISVGKVRNEIVLDLNY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT  G  VE+  + E  TFSQ+ F  ML   K  I  LIK+QK+ I
Sbjct: 178 TEDSNAQVDMNLVMTGKGEFVEIGATGEENTFSQEDFNKMLEYGKSGIERLIKIQKEFI 236


>gi|164686704|ref|ZP_02210732.1| hypothetical protein CLOBAR_00299 [Clostridium bartlettii DSM
           16795]
 gi|164604094|gb|EDQ97559.1| hypothetical protein CLOBAR_00299 [Clostridium bartlettii DSM
           16795]
          Length = 449

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 117/237 (49%), Positives = 159/237 (67%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ +TR  +KYAEGS  ++ GDT +L  A++E+KVP ++RNT  GWI A
Sbjct: 3   RIDGREFDQIRDLKITRNYTKYAEGSVFIEMGDTKVLCNASIEDKVPPFLRNTGTGWINA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  R+A  G+  GRSQEIQR+IGRA+RSVVDL  LG R I IDCDVIQA
Sbjct: 63  EYSMLPRSTQQRKIRDASRGKIDGRSQEIQRLIGRAIRSVVDLDKLGERTIWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA+ D +  +     K      ++  V+AIS G++ G  ++DL Y E
Sbjct: 123 DGGTRTASITGAFVAVLDAINKLH--KEKAIKHMPVRNFVSAISVGIVNGEYLLDLCYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS   VD N +MTD G  VE+QG+ E   FS+     +L L +     L+K Q++ +
Sbjct: 181 DSNAQVDMNIIMTDKGEFVELQGTGEECPFSRKDLEKLLELGEKGNKMLLKAQREAL 237


>gi|253583583|ref|ZP_04860781.1| ribonuclease PH [Fusobacterium varium ATCC 27725]
 gi|251834155|gb|EES62718.1| ribonuclease PH [Fusobacterium varium ATCC 27725]
          Length = 254

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 109/238 (45%), Positives = 164/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ + +REI +T+  + YAEGS L++FG+T ++ TA++ +KVP ++R    GW+T
Sbjct: 17  LREDGRKVDSLREIKITKDFNLYAEGSVLIEFGNTKVICTASVSDKVPPFMRGQGKGWLT 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+TG R +RE+  G+  GR+ EIQR+IGRALR+ VDL  LG R I IDCDVIQ
Sbjct: 77  AEYSMIPRATGERNQRESAKGKLSGRTMEIQRLIGRALRTAVDLDKLGERTITIDCDVIQ 136

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +I+G ++AL   ++ +    ++      +  +VAAIS G++ G P++DL Y 
Sbjct: 137 ADGGTRTTSISGGFIALALAVKKL--MKDRVLSVNPIVSNVAAISVGIVRGTPMLDLMYT 194

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  +VD N VM   G  VEVQG+ E AT+++     +++LA+  I ++I+LQ ++I
Sbjct: 195 EDSAAEVDMNVVMNGKGEFVEVQGTGEEATYTRKELNELIDLAEVGIKEIIRLQNEII 252


>gi|74316495|ref|YP_314235.1| RNAse PH [Thiobacillus denitrificans ATCC 25259]
 gi|74055990|gb|AAZ96430.1| ribonuclease PH [Thiobacillus denitrificans ATCC 25259]
          Length = 244

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 120/229 (52%), Positives = 154/229 (67%), Gaps = 2/229 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  + +R +  TRR +K+AEGS LV  GDT +L TA++ +KVP   + +  GW+TA
Sbjct: 7   RPSGRAPDALRALRFTRRFTKHAEGSVLVAMGDTQVLCTASVVDKVPPHKKGSGEGWVTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR+VVDL  LG R + IDCDV+QA
Sbjct: 67  EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVVDLKKLGERTLHIDCDVLQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+I GA+VA+ D +  +        +   L   VAA+S G+  G P++DLDY E
Sbjct: 127 DGGTRCASICGAYVAVADAVSWL--VREGALVETPLVDSVAAVSVGVYQGQPVLDLDYLE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           DS  D D N VMT SG IVEVQG+AE   FS+    A+L+LA   IA +
Sbjct: 185 DSACDTDMNVVMTGSGGIVEVQGTAEGVAFSRTTLEALLDLATAGIAQI 233


>gi|116671127|ref|YP_832060.1| ribonuclease PH [Arthrobacter sp. FB24]
 gi|116611236|gb|ABK03960.1| RNAse PH [Arthrobacter sp. FB24]
          Length = 252

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 115/239 (48%), Positives = 162/239 (67%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q+R IS+TR  SK AEGS L++FG+T +L TA+L E VP W++    GW+T
Sbjct: 11  IRADGRTPDQLRPISITRGWSKQAEGSALIEFGNTRVLCTASLTEGVPRWLKGEGRGWVT 70

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LRS++D  ALG   I++DCDV+Q
Sbjct: 71  AEYAMLPRATNTRSARESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL + ++   +     + +Q L   +AA+S G++ G P++DL Y 
Sbjct: 131 ADGGTRTAAITGAYVALAEAIRFARENKIISKNAQPLIDTIAAVSVGIIDGVPMLDLPYV 190

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED   + D N V+T SG  VEVQG+AE A F +D    +L+LA      L  +Q++ ++
Sbjct: 191 EDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNQLLDLALLGTEQLAAIQRETLA 249


>gi|284029809|ref|YP_003379740.1| ribonuclease PH [Kribbella flavida DSM 17836]
 gi|283809102|gb|ADB30941.1| ribonuclease PH [Kribbella flavida DSM 17836]
          Length = 238

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 113/238 (47%), Positives = 159/238 (66%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R ++LTR+   +AEGS LV+FG T +L  A++ E VP W + +  GW++A
Sbjct: 3   RIDGRTPDQLRPVTLTRKWLDHAEGSVLVEFGRTRVLCAASVTEGVPRWRKGSGLGWVSA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  RE+V GR GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYAMLPRSTNTRSDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTILLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  + D   K    + L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVSFLRD--RKALKGEPLTGSVSAVSVGIIDGTPMLDLCYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   + D N V+T  G  +EVQG+AE A F +    ++L L      +L KLQ++ ++
Sbjct: 181 DVRAETDMNLVLTGDGKFIEVQGTAEGAPFDRAELDSLLELGTAGCVELTKLQREALA 238


>gi|163791539|ref|ZP_02185943.1| ribonuclease PH/Ham1 protein [Carnobacterium sp. AT7]
 gi|159873175|gb|EDP67275.1| ribonuclease PH/Ham1 protein [Carnobacterium sp. AT7]
          Length = 432

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 117/240 (48%), Positives = 159/240 (66%), Gaps = 3/240 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+ ++ R +++     K+ EGS LV FGDT ++  AT+E KVP +++    GW+ 
Sbjct: 1   MRADGRKNDENRLVTIETNYLKHPEGSVLVSFGDTKVICNATIETKVPRFLKGMGSGWVH 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+I R+LRS +DL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNIREAAKGKLSGRTMEIQRLIARSLRSCIDLEALGERSITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   +Q + D S +  LS + K +VAAIS G+L  G  ++DL+Y
Sbjct: 121 ADGGTRTASITGAFVALKLAIQTLLD-SGELALSPI-KENVAAISVGILEDGQAVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  +VD N VMT  G  VE+QG+ E ATFS +    +L   K  I +LI++Q +  +
Sbjct: 179 LEDSAANVDMNLVMTSGGQFVEIQGTGEEATFSSEQLAVLLEFGKKGIKELIQVQDNAFN 238


>gi|302551723|ref|ZP_07304065.1| ribonuclease PH [Streptomyces viridochromogenes DSM 40736]
 gi|302469341|gb|EFL32434.1| ribonuclease PH [Streptomyces viridochromogenes DSM 40736]
          Length = 245

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 117/237 (49%), Positives = 155/237 (65%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R I++ R  SK+AEGS LV FGDT +  TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPQQLRPITIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  RE+V GR GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRSTNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         Q L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQRKKLIKAGRQPLTGTVSAVSVGIVGGVPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   D D N V T  G  VEVQG+AE   F++D   A+L+LA    ++L   Q+  +
Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVAGCSELAAHQRTAL 239


>gi|220913058|ref|YP_002488367.1| ribonuclease PH [Arthrobacter chlorophenolicus A6]
 gi|219859936|gb|ACL40278.1| ribonuclease PH [Arthrobacter chlorophenolicus A6]
          Length = 252

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 115/240 (47%), Positives = 161/240 (67%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q+R IS+TR  S  AEGS L++FG+T +L TA+L   VP W++    GW+T
Sbjct: 11  VRADGRAPDQLRPISITRGWSNQAEGSALIEFGNTRVLCTASLTAGVPRWLKGEGRGWVT 70

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LRS++D  ALG   I++DCDV+Q
Sbjct: 71  AEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D ++   D     + +Q L   +AA+S G++ G P++DL Y 
Sbjct: 131 ADGGTRTAAITGAYVALADAIRFARDNKLIARNAQPLTDTIAAVSVGIIDGVPMLDLPYV 190

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   + D N V+T SG  VEVQG+AE A F +D    +L+LA      L  +Q++ +++
Sbjct: 191 EDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNQLLDLALLGTTQLAAIQRETLAD 250


>gi|308234186|ref|ZP_07664923.1| RNAse PH [Atopobium vaginae DSM 15829]
 gi|328944441|ref|ZP_08241903.1| tRNA nucleotidyltransferase [Atopobium vaginae DSM 15829]
 gi|327491025|gb|EGF22802.1| tRNA nucleotidyltransferase [Atopobium vaginae DSM 15829]
          Length = 272

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 121/236 (51%), Positives = 156/236 (66%), Gaps = 4/236 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   + R  +L R+V KYA+GSCL+  GDT +L +AT+E+ +P W + +  GW++A
Sbjct: 38  RSYGRSAFEARPCTLERQVMKYADGSCLITCGDTRVLCSATVEDTLPTWRKLSHLGWVSA 97

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP S   R  RE   GR+G RS EI+R+IGR+LRSVVD S LG   I IDCDV+QA
Sbjct: 98  EYAMLPASAKRRTPRE-YKGRKG-RSMEIERLIGRSLRSVVDFSKLGEHTITIDCDVLQA 155

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+I GAWVALHD  + M +     +    L G VAAIS G++ G  +VDLDY E
Sbjct: 156 DGGTRTASIVGAWVALHDACRKMVEADKIARCP--LTGQVAAISMGIVHGELLVDLDYPE 213

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           DS  DVD N VM D G +VE+QG+ ERAT S+    A+L+ ++  +  L  LQK V
Sbjct: 214 DSNADVDLNVVMRDDGGLVEIQGTGERATLSRHDLNALLDASEPALTKLFALQKSV 269


>gi|261823588|ref|YP_003261694.1| ribonuclease PH [Pectobacterium wasabiae WPP163]
 gi|261607601|gb|ACX90087.1| ribonuclease PH [Pectobacterium wasabiae WPP163]
          Length = 238

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 119/240 (49%), Positives = 163/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++ TR  +K+AEGS LV+FGDT +L  AT+EE VP +++    GW+T
Sbjct: 1   MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ +DL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  M     K +    +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNQMV-AKGKLK-KNPMKGMVAAVSVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G +VEVQG+AE   FS +    +L LA+  I  +++ QK  +++
Sbjct: 179 EDSAAETDMNVVMTEDGRMVEVQGTAEGEPFSHEELLTLLALARGGIDTIVQAQKAALAD 238


>gi|322835049|ref|YP_004215076.1| ribonuclease PH [Rahnella sp. Y9602]
 gi|321170250|gb|ADW75949.1| ribonuclease PH [Rahnella sp. Y9602]
          Length = 238

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 120/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPAGRNAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +   + K + +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNALV-AAGKLK-ANPMKGMVAAVSVGIVKGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +    +L LA+  I  + + QK  ++ 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLGLLALARGGIDTIFQAQKAALAE 238


>gi|15606253|ref|NP_213631.1| RNase PH [Aquifex aeolicus VF5]
 gi|6094114|sp|O67069|RNPH_AQUAE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|37928163|pdb|1UDN|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
           From Aquifex Aeolicus
 gi|2983451|gb|AAC07032.1| RNase PH [Aquifex aeolicus VF5]
          Length = 255

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 117/239 (48%), Positives = 160/239 (66%), Gaps = 6/239 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+E+Q+R +S+ R   +Y EGSCL+ FG T ++ TA++ E VP W++    GWIT
Sbjct: 1   MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V GR GGR+ EIQRMIGRA+R+ V+L+ +G R I +DCDVIQ
Sbjct: 61  AEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCL--QHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ADGGTRTAAITGA+VA+ D +   H E    +      +K  VAA+S G++    ++DL+
Sbjct: 121 ADGGTRTAAITGAFVAVADAIIKLHKEGIIEETP----IKDFVAAVSVGIVNDRILLDLN 176

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           + EDS   VD N V T SG + EV    E  +F++D    ML+LA+  I +LI+LQK +
Sbjct: 177 FEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKKL 235


>gi|225848159|ref|YP_002728322.1| ribonuclease PH [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644653|gb|ACN99703.1| ribonuclease PH [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 257

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 115/238 (48%), Positives = 154/238 (64%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R+  Q+R I +TR  + YAEGS L++FG+T ++ TA++E+KVP +++ +  GWIT
Sbjct: 1   MRPDNRKPAQLRPIKITRDFNIYAEGSVLIEFGNTKVIVTASIEDKVPPFLKGSGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR++  R  RE V G   GR+ EIQR+IGR+LR+ VDL  LG R I IDCDVIQ
Sbjct: 61  AEYSMIPRASETRSLREVVRGSPSGRTHEIQRLIGRSLRAAVDLKKLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITGA++A+ D L  +E   N    S  LK +VAAIS G +    ++DL+Y 
Sbjct: 121 ADGGTRVASITGAFIAVADALIKLE--KNNLVKSNPLKDYVAAISVGKVNNEIVLDLNYQ 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS   VD N VMT  G  VE+  + E  TF+      M+   K  I  LIK+QK+ I
Sbjct: 179 EDSKAQVDMNIVMTGKGEFVELGATGEENTFTYQELQKMIEYGKSGIERLIKIQKEFI 236


>gi|82523945|emb|CAI78667.1| ribonuclease PH [uncultured delta proteobacterium]
          Length = 242

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 113/239 (47%), Positives = 161/239 (67%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R +GR+ N++R I++T    K   GS LV+FG+T ++  ATLE+K   +++NT  GW+TA
Sbjct: 4   RSAGRKYNELRPINITNNFLKTTAGSALVEFGNTKVICAATLEDKSAPFLKNTGRGWVTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R  RE+  G+ GGR+ EIQR+IGR+LR+V DL++ G + I +DCDVIQA
Sbjct: 64  EYSMLPASTQTRTPRESTRGKVGGRTHEIQRLIGRSLRAVCDLNSFGEKTIYMDCDVIQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITG ++AL + L+ M+  ++       +  +V+AIS G++    ++DL+Y E
Sbjct: 124 DGGTRTASITGGFIALVELLKKMK--ADGIVKEIPVNDYVSAISVGIIENKILLDLEYEE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  DVD NFVMT SG  +EVQG+AE   F ++    M  LA   I +LI LQK ++ N
Sbjct: 182 DSKADVDMNFVMTGSGKFIEVQGTAEHVPFDKNQMHEMTTLAGQGIEELIALQKKIVGN 240


>gi|254670670|emb|CBA06757.1| ribonuclease PH [Neisseria meningitidis alpha153]
 gi|261392252|emb|CAX49772.1| ribonuclease PH (RNase PH; tRNA nucleotidyltransferase) [Neisseria
           meningitidis 8013]
 gi|325204479|gb|ADY99932.1| ribonuclease PH [Neisseria meningitidis M01-240355]
          Length = 242

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 118/239 (49%), Positives = 172/239 (71%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+S R  + +R+I +T     +A+GSCL++ G+T ++ TA+++E VP ++R    GW+T
Sbjct: 5   IRIS-RAADSLRDIKITPHFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVT 63

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQ
Sbjct: 64  AEYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL   +  +   S+       ++  VAA+S G++ G P++DLDY 
Sbjct: 124 ADGGTRTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSVGVVNGVPLLDLDYP 181

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT SG I+E+QG+AE A FS D    ++ LA+  I +L++ Q++ +S
Sbjct: 182 EDSGCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALS 240


>gi|313668116|ref|YP_004048400.1| ribonuclease PH [Neisseria lactamica ST-640]
 gi|313005578|emb|CBN87014.1| ribonuclease PH [Neisseria lactamica 020-06]
          Length = 242

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 115/236 (48%), Positives = 168/236 (71%), Gaps = 2/236 (0%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
           + R  + +R+I +T R   + +GSCL++ G+T ++ TA+++E VP ++R    GW+TAEY
Sbjct: 7   TSRAADSLRDIKITPRFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVTAEY 66

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           GMLP ST +R++REA  G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADG
Sbjct: 67  GMLPASTASRMRREASEGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
           GTRTA+ITGA+VAL   +  +   S+       ++  VAA+S G++ G P++DLDY EDS
Sbjct: 127 GTRTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSAGVVNGVPLLDLDYPEDS 184

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
             D D N VMT SG I+E+QG+AE A FS +    ++ LA+  I +L++ Q++ +S
Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEGAPFSLEELGKLIGLAEKGIGELLRYQQNALS 240


>gi|291460911|ref|ZP_06025826.2| ribonuclease PH/Ham1 protein [Fusobacterium periodonticum ATCC
           33693]
 gi|291380070|gb|EFE87588.1| ribonuclease PH/Ham1 protein [Fusobacterium periodonticum ATCC
           33693]
          Length = 436

 Score =  229 bits (583), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 114/241 (47%), Positives = 158/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ N+ R+I +T+ V+ YAEGS L++ G+T ++ TA++ EKVP ++R T  GW+T
Sbjct: 3   LREDGRKFNEERKIKITKDVNIYAEGSVLIEVGNTKVICTASVSEKVPPFLRGTGKGWVT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +REA  G+  GR+ EIQR+IGRALRS +DL  LG R I IDCDVIQ
Sbjct: 63  AEYSMLPRATNERNQREASKGKLTGRTVEIQRLIGRALRSAIDLEKLGERLITIDCDVIQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG ++AL   ++ +     +      L  +VAAIS G +    +VDL Y 
Sbjct: 123 ADGGTRTTSITGGYIALALAIKKL--LKEEILEENPLIANVAAISVGKINSELMVDLKYS 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  +VD N +M   G  +EVQG+ E +TF++     +L+LA+  I  +I LQ  VI  
Sbjct: 181 EDSAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNGLLDLAEASIKRIIDLQDKVIEQ 240

Query: 241 E 241
           E
Sbjct: 241 E 241


>gi|229815851|ref|ZP_04446175.1| hypothetical protein COLINT_02905 [Collinsella intestinalis DSM
           13280]
 gi|229808546|gb|EEP44324.1| hypothetical protein COLINT_02905 [Collinsella intestinalis DSM
           13280]
          Length = 244

 Score =  228 bits (582), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 121/238 (50%), Positives = 163/238 (68%), Gaps = 4/238 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R +GR  NQMR ++LTR V K+A GSCLV+FGDT +L  AT+EE VP W + +  GW+TA
Sbjct: 8   RANGRAANQMRTVNLTRDVMKHALGSCLVEFGDTKVLCAATIEEGVPGWRKASHQGWVTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R +RE  + +  GRS EI+R+IGR+LR+VV++ +LG   + +DCDVIQA
Sbjct: 68  EYAMLPASTNRRTRRETNNRK--GRSMEIERLIGRSLRTVVNMKSLGEHTVTVDCDVIQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGAWVALHD L    +     +L   L G VAA+S G++ G  ++DLDY E
Sbjct: 126 DGGTRTASITGAWVALHDALMAWVEAGKIARLP--LTGQVAAVSMGLVDGCELLDLDYSE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G I+E+QG+ E+  F +     +L+L +  I  LI LQ +V +
Sbjct: 184 DSHAEVDMNLVATDAGEIIEIQGTGEQTPFDRARLNRLLDLGELGIKQLIDLQNEVTA 241


>gi|253575653|ref|ZP_04852989.1| ribonuclease PH [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844991|gb|EES73003.1| ribonuclease PH [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 252

 Score =  228 bits (582), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 117/240 (48%), Positives = 163/240 (67%), Gaps = 6/240 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GRQ ++ R ++LT  V+KYAEGS  ++ GDT ++ TAT+EEKVPM+++    GW+T
Sbjct: 1   MRSNGRQADERRAMNLTVNVNKYAEGSVYIEVGDTKVMCTATVEEKVPMFMKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+I RALRSVVDL ALG R I IDCDV+Q
Sbjct: 61  AEYSMLPRATQTRNQRESARGKLSGRTMEIQRLIARALRSVVDLQALGERSITIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ADGGTRT +ITGA+VAL   +  +  +    KF ++  L    A++S G++    ++DL+
Sbjct: 121 ADGGTRTTSITGAFVALALAMHKIAQKHALPKFPITDFL----ASVSVGIVGEDTLLDLN 176

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y EDS   VD N VMT +G  VEVQG+ E   FS+     ML LA+  I ++I+ Q++ +
Sbjct: 177 YEEDSKAKVDMNVVMTGNGQFVEVQGTGEENPFSRAELDHMLELAEKGIREMIEQQREAL 236


>gi|182438431|ref|YP_001826150.1| ribonuclease PH [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|226736942|sp|B1VVV6|RNPH_STRGG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|178466947|dbj|BAG21467.1| putative ribonuclease PH [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 245

 Score =  228 bits (582), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 117/237 (49%), Positives = 154/237 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS L+ FGDT +  TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  REAV G+ GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDCKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L   VAAIS G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   + D N V T  G  VEVQG+AE A F +    A+L+LA     DL  LQ+D +
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRKELGALLDLATAGCVDLAALQRDAL 239


>gi|325266593|ref|ZP_08133270.1| tRNA nucleotidyltransferase [Kingella denitrificans ATCC 33394]
 gi|324982036|gb|EGC17671.1| tRNA nucleotidyltransferase [Kingella denitrificans ATCC 33394]
          Length = 292

 Score =  228 bits (582), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 112/233 (48%), Positives = 162/233 (69%), Gaps = 2/233 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  + +R I++T     +A+GS L+  G+T ++ TAT++E +P ++R    GW+TAEYGM
Sbjct: 58  RATDALRPITITPNFLPHADGSVLMACGNTKVICTATIDENIPPFLRGKGQGWVTAEYGM 117

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST +R+KREA +G+Q GR+QEIQR+IGR+LR+ VD++ LG RQI+IDCDVIQADGGT
Sbjct: 118 LPASTQSRMKREAAAGKQSGRTQEIQRLIGRSLRAAVDMTKLGERQILIDCDVIQADGGT 177

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTA+ITGA+VAL   ++ +   ++       L G VAAIS G++ G P++DLDY EDS  
Sbjct: 178 RTASITGAFVALQIAVRKL--LADGRIAENPLVGSVAAISVGVVGGVPLLDLDYPEDSGC 235

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D D N VM ++  I+E+QG+AE A F  D    ++ L +  I +L +LQ+  +
Sbjct: 236 DSDINLVMLNADKIIEIQGTAEGAAFGMDELQQLVALGQKGIRELSELQRQAV 288


>gi|319778262|ref|YP_004129175.1| Ribonuclease PH [Taylorella equigenitalis MCE9]
 gi|317108286|gb|ADU91032.1| Ribonuclease PH [Taylorella equigenitalis MCE9]
          Length = 251

 Score =  228 bits (582), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 116/234 (49%), Positives = 160/234 (68%), Gaps = 4/234 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R +S+TR  + YAEGS L+K G TH+L  A++  KVP +++    GW+TA
Sbjct: 8   RSDGRSNNQIRNVSITRNYTPYAEGSVLIKVGQTHVLCNASVLPKVPPFLKGQGTGWVTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T +R+ REA  G+Q GR+QEIQR+IGR+LR+ +DL+ALG   I IDCDVIQA
Sbjct: 68  EYGMLPRATHDRMDREASKGKQTGRTQEIQRLIGRSLRACIDLAALGEISIHIDCDVIQA 127

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-SQVLKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTR A+ITGAWVAL+D +     C  +  + S  +   + AIS G++    ++DLDY 
Sbjct: 128 DGGTRCASITGAWVALYDAINK---CIERGLIQSNPIHQQIVAISVGVVGDGLLLDLDYS 184

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           EDS  + D N VMT +   VE+QG+AE  TFS+D    +L+LA+     L+++Q
Sbjct: 185 EDSNCESDINVVMTSNKTFVEIQGTAEGETFSRDSLNQLLDLAQFGCDQLLRVQ 238


>gi|239941573|ref|ZP_04693510.1| ribonuclease PH [Streptomyces roseosporus NRRL 15998]
 gi|239988038|ref|ZP_04708702.1| ribonuclease PH [Streptomyces roseosporus NRRL 11379]
 gi|291445016|ref|ZP_06584406.1| ribonuclease PH [Streptomyces roseosporus NRRL 15998]
 gi|291347963|gb|EFE74867.1| ribonuclease PH [Streptomyces roseosporus NRRL 15998]
          Length = 245

 Score =  228 bits (582), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 116/239 (48%), Positives = 155/239 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS L+ FGDT +  TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  REAV G+ GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L   VAAIS G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVTWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   + D N V T  G  VEVQG+AE A F +    ++L+LA     DL  LQ+D ++ 
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRKELGSLLDLATAGCVDLAALQRDALAT 241


>gi|260579680|ref|ZP_05847543.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium ATCC 43734]
 gi|258602199|gb|EEW15513.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium ATCC 43734]
          Length = 256

 Score =  228 bits (582), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 111/241 (46%), Positives = 161/241 (66%), Gaps = 2/241 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  N++R + +TR  +    GS LV+FG+T ++ TA++EE VP + +++  GW+TA
Sbjct: 18  RADGRATNELRPVRITRGFTSNPAGSVLVEFGNTRVMCTASVEEGVPRFKKDSGEGWLTA 77

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R+ RE++ G+  GR+QEI R++GRALR+ VDL  LG   + IDCDV+QA
Sbjct: 78  EYAMLPASTHERMPRESMKGKVKGRTQEISRLVGRALRAAVDLKELGENTVNIDCDVLQA 137

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D L  ++  +      Q L+  VAA+S G++ G P +DL Y E
Sbjct: 138 DGGTRTAAITGAYVALADALAVLQ--ARGVVPGQPLRAPVAAVSVGIIDGVPCLDLPYEE 195

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  DVD N  MT  G  VE+QG+ E A F+++    +L+LA+  + +LI+ Q+  ++ E
Sbjct: 196 DSRADVDMNVAMTAEGRFVEIQGTGENAEFTREELNTLLDLAEGGLRELIEAQRAALAQE 255

Query: 242 V 242
           +
Sbjct: 256 L 256


>gi|290960058|ref|YP_003491240.1| ribonuclease [Streptomyces scabiei 87.22]
 gi|260649584|emb|CBG72699.1| putative ribonuclease [Streptomyces scabiei 87.22]
          Length = 245

 Score =  228 bits (581), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 114/237 (48%), Positives = 155/237 (65%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS LV FGDT +  TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         Q L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVSWAQGRKLIKAGRQPLTGTVSAVSVGIVGGVPLLDLRYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   D D N V T  G  VEVQG+AE   F+++   ++L+LA     +L  LQ+  +
Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFAREELNSLLDLAVSGCTELALLQRKAL 239


>gi|1079663|gb|AAC44429.1| RNase PH [Pseudomonas aeruginosa PAO1]
          Length = 239

 Score =  228 bits (581), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T + E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGML RSTG R +REA  G+QGGR+ EIQR+I R+LR+ +DLS LG   + IDCDVIQ 
Sbjct: 63  EYGMLRRSTGERNQREASRGKQGGRTLEIQRLIDRSLRAALDLSKLGENTLYIDCDVIQT 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS-QVLKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTA+ITGA V+L D L  ++    +  L    LK  VAA+S G+  G P++DLDY 
Sbjct: 123 DGGTRTASITGATVSLIDALAVLK---KRVALKGNPLKQIVAAVSVGIYQGVPVLDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMTD    +EVQG+AE A F      AML LA+  + +L++ Q+  ++
Sbjct: 180 EDSAAESDLNVVMTDCRRFIEVQGTAEGAPFRPAELNAMLELAQQGMQELVRTQRAALA 238


>gi|91204195|emb|CAJ71848.1| strongly similar to ribonuclease PH [Candidatus Kuenenia
           stuttgartiensis]
          Length = 238

 Score =  228 bits (581), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 113/238 (47%), Positives = 164/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R+ +++R +++TR  +KY+ GS LV+ G+T ++ TA++EE VP  I+NT  GWIT
Sbjct: 1   MRVDNRKYDELRPVTITRNFTKYSAGSVLVESGNTKVICTASIEEYVPPHIKNTGTGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY +LP +T +RV RE+  G+  GR+ EIQR+IGR+LR++ DL+ L  R I IDCDVIQ
Sbjct: 61  AEYSLLPGATPSRVPRESTKGKISGRTHEIQRLIGRSLRAICDLTLLKERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG+++AL D +Q + D  N  + + ++   VAAIS G++    ++DL Y 
Sbjct: 121 ADGGTRTAAITGSYIALADAVQWLLD-KNVIKENPLINS-VAAISAGIVNNIALLDLCYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           ED++  VD NFVMT SG  +EVQG+ E   F +D    ML LA   I ++ ++QK  +
Sbjct: 179 EDASAQVDMNFVMTGSGKYIEVQGTGEEYAFDEDQLAKMLTLAHKGICEITEIQKKAL 236


>gi|297160096|gb|ADI09808.1| ribonuclease PH [Streptomyces bingchenggensis BCW-1]
          Length = 243

 Score =  228 bits (581), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 113/240 (47%), Positives = 158/240 (65%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R +++ R  SK+AEGS LV FGDT +L TA+  E VP W + +  GW+TA
Sbjct: 3   RIDGRTPDQLRPVTIERAWSKHAEGSVLVSFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+V+D  ALG   +++DCDV+QA
Sbjct: 63  EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D L   +         Q L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADALTWGQGKKLIKAGRQPLTGTVSAVSVGIVGGIPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D   + D N V T  G  VEVQG+AE   F+++    +L+LA     +L ++Q+  ++ E
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGEPFAREELNGLLDLAVAGCGELAEIQRAALAGE 242


>gi|257069148|ref|YP_003155403.1| RNAse PH [Brachybacterium faecium DSM 4810]
 gi|256559966|gb|ACU85813.1| RNAse PH [Brachybacterium faecium DSM 4810]
          Length = 252

 Score =  228 bits (581), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 115/240 (47%), Positives = 160/240 (66%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+RE+ +TR    +AEGS L++FG T +L  A+    VP W + +  GW+TA
Sbjct: 12  RIDGRTPDQLREVRITRGWLDHAEGSALIEFGRTRVLCAASFTAGVPRWKQGSGSGWVTA 71

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T +R  RE+V G+ GGR+ EI R+IGR+LR+V+DL ALG   I +DCDV+QA
Sbjct: 72  EYAMLPRATNSRSPRESVKGKIGGRTHEISRLIGRSLRAVIDLDALGENTIQLDCDVLQA 131

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +  +     +QVL   V+AIS G++   P++DL+Y E
Sbjct: 132 DGGTRTAAITGAYVALADAISWGKQHTALPAAAQVLTDSVSAISVGIVDDRPLLDLEYRE 191

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D     D N V+T SG  VEVQG+AE A F +    A+L+LA    A L + Q+DV++ +
Sbjct: 192 DVAAGTDMNVVVTGSGSFVEVQGTAEGAPFDRAELGALLDLATGGCAQLAQTQQDVLAQQ 251


>gi|284799568|ref|ZP_05984302.2| tRNA nucleotidyltransferase [Neisseria subflava NJ9703]
 gi|284797404|gb|EFC52751.1| tRNA nucleotidyltransferase [Neisseria subflava NJ9703]
          Length = 277

 Score =  228 bits (581), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 116/232 (50%), Positives = 168/232 (72%), Gaps = 2/232 (0%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
           +GR  + +R+I +T     +A+GSCL++ G+T ++ TA+++E VP ++R  + GW+TAEY
Sbjct: 42  TGRAADSLRDIKITPNFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKEQGWVTAEY 101

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           GMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADG
Sbjct: 102 GMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 161

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
           GTRTA+ITGA+VAL   +  +   SN       ++  VAA+S G++ G P++DLDY EDS
Sbjct: 162 GTRTASITGAYVALQIAVDKL--LSNGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDS 219

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
             D D N +MT SG I+E+QG+AE A FS +    ++ LA   IA+L++ Q+
Sbjct: 220 GCDSDVNIIMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQQ 271


>gi|238760457|ref|ZP_04621595.1| Ribonuclease PH [Yersinia aldovae ATCC 35236]
 gi|238783915|ref|ZP_04627932.1| Ribonuclease PH [Yersinia bercovieri ATCC 43970]
 gi|238701352|gb|EEP93931.1| Ribonuclease PH [Yersinia aldovae ATCC 35236]
 gi|238715154|gb|EEQ07149.1| Ribonuclease PH [Yersinia bercovieri ATCC 43970]
          Length = 238

 Score =  228 bits (581), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 121/240 (50%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +   S K + +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNKLV-ASGKLK-ANPMKGLVAAVSVGIVKGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +   A+L LA+  I  + + QK  ++ 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIETIFQAQKAALAQ 238


>gi|238797068|ref|ZP_04640571.1| Ribonuclease PH [Yersinia mollaretii ATCC 43969]
 gi|238719113|gb|EEQ10926.1| Ribonuclease PH [Yersinia mollaretii ATCC 43969]
          Length = 238

 Score =  228 bits (581), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 121/240 (50%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +   S K + +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNKLV-ASGKLK-ANPMKGLVAAVSVGIVKGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +   A+L LA+  I  + + QK  ++ 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIETIFQAQKAALAE 238


>gi|172058161|ref|YP_001814621.1| ribonuclease PH [Exiguobacterium sibiricum 255-15]
 gi|226736909|sp|B1YJW6|RNPH_EXIS2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|171990682|gb|ACB61604.1| ribonuclease PH [Exiguobacterium sibiricum 255-15]
          Length = 250

 Score =  228 bits (581), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 120/231 (51%), Positives = 157/231 (67%), Gaps = 2/231 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MRL  R ++ MR+I L   V+K+AEGS L+  GDT +L TAT+EEKVP ++R  +HGWI 
Sbjct: 1   MRLDQRAQSDMRKIQLETDVNKHAEGSVLISVGDTRVLCTATVEEKVPPFLRGKRHGWIN 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REAV G+Q GR+ EIQR+I RALRSVV+L  LG R + IDCDV+Q
Sbjct: 61  AEYAMLPRATAQRTGREAVRGKQTGRTMEIQRLISRALRSVVNLEKLGERTVWIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG ++AL   +  +   S K   + + +G +AA+S G +    ++DL Y 
Sbjct: 121 ADGGTRTAAITGGFLALVLAVDGLIQ-SGKLTDTPIKEG-IAAVSVGKVGTELLLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           ED+  DVD N VMT SG IVE+Q + E ATFS+     ML L +  I +L+
Sbjct: 179 EDAAADVDLNLVMTSSGKIVELQATGEEATFSRKEMLDMLELGEKGIEELL 229


>gi|21221351|ref|NP_627130.1| ribonuclease PH [Streptomyces coelicolor A3(2)]
 gi|256787469|ref|ZP_05525900.1| ribonuclease PH [Streptomyces lividans TK24]
 gi|289771366|ref|ZP_06530744.1| ribonuclease PH [Streptomyces lividans TK24]
 gi|21759422|sp|Q9S2H7|RNPH_STRCO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|5531353|emb|CAB50985.1| putative ribonuclease PH [Streptomyces coelicolor A3(2)]
 gi|289701565|gb|EFD68994.1| ribonuclease PH [Streptomyces lividans TK24]
          Length = 245

 Score =  228 bits (581), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 113/237 (47%), Positives = 155/237 (65%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS LV FGDT +L  A++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPQQLRPVTIERGWSKHAEGSVLVSFGDTKVLCNASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+V+D  ALG   +++DCDV+QA
Sbjct: 63  EYAMLPRATNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGRKLIKANRKPLTGTVSAVSVGIVDGTPLLDLRYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   D D N V T  G  VEVQG+AE   F++D    +L+LA     +L +LQ+  +
Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNTLLDLATAGCTELAELQRKAL 239


>gi|257869443|ref|ZP_05649096.1| ribonuclease PH/Ham1 [Enterococcus gallinarum EG2]
 gi|257803607|gb|EEV32429.1| ribonuclease PH/Ham1 [Enterococcus gallinarum EG2]
          Length = 450

 Score =  228 bits (580), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 113/239 (47%), Positives = 157/239 (65%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+   +R + +   V K+ EGS ++ FGDT ++ +AT+E++VP ++R++  GW+T
Sbjct: 1   MRHDGRKAGSIRPVEIKTNVFKHPEGSVVISFGDTTVICSATIEDRVPPFLRDSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+I R+LR+VVDL  LG R I++DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDY 179
           ADGGTRTA+ITGA+VAL   +  +   +N       +K H+AAIS G+L     + DLDY
Sbjct: 121 ADGGTRTASITGAFVALRLAIDQL--LTNHELTEDPIKEHLAAISVGILPDNTCVTDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  +E+QG+ E ATF       ML   K  I +LI  QK+ +
Sbjct: 179 EEDSAAAVDMNLVMTESGRFIEIQGTGEEATFDGQQLNEMLIYGKTAIEELIAYQKEAL 237


>gi|315645714|ref|ZP_07898838.1| hypothetical protein PVOR_09560 [Paenibacillus vortex V453]
 gi|315279192|gb|EFU42502.1| hypothetical protein PVOR_09560 [Paenibacillus vortex V453]
          Length = 252

 Score =  228 bits (580), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 114/238 (47%), Positives = 166/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR+ +++R ++L+  V+KYAEGS  ++ GDT +L TAT++EKVP +++    GW+T
Sbjct: 1   MRSNGRKSDELRPMNLSTHVNKYAEGSVYIEMGDTKVLITATVDEKVPPFLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R +REA  G+  GR+ EIQR+IGRALRSVV+L ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATQSRNQREANRGKLTGRTMEIQRLIGRALRSVVNLYALGERTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITGA+VAL   +  + +  +K  +  +   ++A+IS G+  G  ++DL+Y 
Sbjct: 121 ADGGTRTTSITGAFVALAIAVNKIAE-QHKLAVFPITD-YLASISVGIAGGQALLDLNYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS   VD N VMT  G  VEVQG+ E + FS++    +L L +  I +LI+ Q++ +
Sbjct: 179 EDSKAKVDMNLVMTGGGKFVEVQGTGEESPFSREELDQILELGEKGIRELIERQQEAL 236


>gi|238794526|ref|ZP_04638134.1| Ribonuclease PH [Yersinia intermedia ATCC 29909]
 gi|238726106|gb|EEQ17652.1| Ribonuclease PH [Yersinia intermedia ATCC 29909]
          Length = 238

 Score =  227 bits (579), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 120/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +   + K + +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNKLV-AAGKLK-ANPMKGLVAAVSVGIVKGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +   A+L LA+  I  + + QK V++ 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIETIFQAQKAVLAQ 238


>gi|319637683|ref|ZP_07992449.1| ribonuclease PH [Neisseria mucosa C102]
 gi|317400838|gb|EFV81493.1| ribonuclease PH [Neisseria mucosa C102]
          Length = 242

 Score =  227 bits (579), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 116/232 (50%), Positives = 167/232 (71%), Gaps = 2/232 (0%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
           +GR  + +R I +T     +A+GSCL++ G+T ++ TA+++E VP ++R  + GW+TAEY
Sbjct: 7   TGRAADSLRNIKITPNFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKEQGWVTAEY 66

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           GMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADG
Sbjct: 67  GMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
           GTRTA+ITGA+VAL   +  +   S+       ++  VAA+S G++ G P++DLDY EDS
Sbjct: 127 GTRTASITGAYVALQIAVDKL--LSDGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDS 184

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
             D D N +MT SG I+E+QG+AE A FS +    ++ LA   IA+L++ QK
Sbjct: 185 GCDSDVNIIMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQK 236


>gi|227328057|ref|ZP_03832081.1| ribonuclease PH [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 238

 Score =  227 bits (579), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 118/235 (50%), Positives = 160/235 (68%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++ TR  +K+AEGS LV+FGDT +L  AT+EE VP +++    GW+T
Sbjct: 1   MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ +DL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  M     K +    +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNQMV-AKGKLK-KNPMKGMVAAVSVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  + D N VMT+ G ++EVQG+AE   FS +    +L LA+  I  +++ QK
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLTLLALARGGIDTIVQAQK 233


>gi|257063633|ref|YP_003143305.1| RNAse PH [Slackia heliotrinireducens DSM 20476]
 gi|256791286|gb|ACV21956.1| RNAse PH [Slackia heliotrinireducens DSM 20476]
          Length = 240

 Score =  227 bits (579), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 118/238 (49%), Positives = 163/238 (68%), Gaps = 5/238 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+  R +  +R ++L R V K A GSCLVKFGDTH+L  AT+EE+VP W +N+  GW+TA
Sbjct: 5   RVDNRADRAIRPVTLERGVMKNATGSCLVKFGDTHVLCAATIEERVPGWRKNSGLGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII-IDCDVIQ 120
           EY MLP ST  R  RE   GR+ GRSQEI+R+IGR+LR+V D+ A+G   ++ +DCDV+Q
Sbjct: 65  EYAMLPASTSKRTPRE-YKGRK-GRSQEIERLIGRSLRNVCDMGAMGGEVLMTVDCDVLQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVA +D  + M   S K + + +  G VAAIS GM+ G  ++DLDY 
Sbjct: 123 ADGGTRTASITGAWVAAYDAFE-MWRKSGKCKRNPLF-GQVAAISVGMVGGRLLLDLDYR 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  ++D N VM   G  +E+QG+ E+A F +     ML++A+  I +L+ LQ+  +
Sbjct: 181 EDSKAEIDMNVVMNAKGEFIEIQGTGEQAPFGKATLDDMLSMAQSGIEELLALQRAAV 238


>gi|119962182|ref|YP_948291.1| ribonuclease PH [Arthrobacter aurescens TC1]
 gi|119949041|gb|ABM07952.1| ribonuclease PH [Arthrobacter aurescens TC1]
          Length = 252

 Score =  227 bits (579), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 115/239 (48%), Positives = 163/239 (68%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q+R IS+TR  SK AEGS L++FG+T +L TA+L E VP W++    GW+T
Sbjct: 11  IRADGRTPDQLRPISITRGWSKQAEGSALIEFGNTRVLCTASLTEGVPRWLKGEGRGWVT 70

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LRS++D  ALG   I++DCDV+Q
Sbjct: 71  AEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL + ++   +     + ++ L   +AA+S G++ G P++DL Y 
Sbjct: 131 ADGGTRTAAITGAYVALAEAIRFARENKLIARNAEPLVDTIAAVSVGIIDGVPMLDLPYV 190

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED   + D N V+T SG  VEVQG+AE A F +D   A+L+LA      L  +Q++ ++
Sbjct: 191 EDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNALLDLALLGTTQLSAIQRETLA 249


>gi|256396655|ref|YP_003118219.1| ribonuclease PH [Catenulispora acidiphila DSM 44928]
 gi|256362881|gb|ACU76378.1| ribonuclease PH [Catenulispora acidiphila DSM 44928]
          Length = 243

 Score =  227 bits (579), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 113/212 (53%), Positives = 147/212 (69%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+  Q+R ++LTR+ S + EGS LV+FG T +L TA++ E VP W+R +  GW+TA
Sbjct: 5   RVDGRKVGQLRPVTLTRKWSIHPEGSVLVEFGQTKVLCTASVTEGVPRWLRGSGKGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+QEI R+IGRALR+VVD  ALG   II+DCDV+QA
Sbjct: 65  EYAMLPRATNTRGDRESVKGKVGGRTQEISRLIGRALRAVVDTKALGENTIIVDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  M D        + L G V+A+S G++ G P++DL Y E
Sbjct: 125 DGGTRTAAITGAYVALQDAVTWMRDKKMIKASREPLAGSVSAVSVGIIDGVPMLDLCYEE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
           D   + D N V T  G  VEVQG+AE A F +
Sbjct: 185 DVRAETDMNVVCTADGKFVEVQGTAEGAPFDR 216


>gi|121635173|ref|YP_975418.1| ribonuclease PH [Neisseria meningitidis FAM18]
 gi|161870362|ref|YP_001599532.1| ribonuclease PH [Neisseria meningitidis 053442]
 gi|218768484|ref|YP_002342996.1| ribonuclease PH [Neisseria meningitidis Z2491]
 gi|304387097|ref|ZP_07369348.1| tRNA nucleotidyltransferase [Neisseria meningitidis ATCC 13091]
 gi|21759416|sp|Q9JTN2|RNPH_NEIMA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228298|sp|A1KUT9|RNPH_NEIMF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043768|sp|A9M0T5|RNPH_NEIM0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|120866879|emb|CAM10638.1| ribonuclease PH [Neisseria meningitidis FAM18]
 gi|121052492|emb|CAM08831.1| ribonuclease PH [Neisseria meningitidis Z2491]
 gi|161595915|gb|ABX73575.1| ribonuclease PH [Neisseria meningitidis 053442]
 gi|304338846|gb|EFM04949.1| tRNA nucleotidyltransferase [Neisseria meningitidis ATCC 13091]
 gi|308389647|gb|ADO31967.1| ribonuclease PH [Neisseria meningitidis alpha710]
 gi|319410733|emb|CBY91115.1| ribonuclease PH (RNase PH; tRNA nucleotidyltransferase) [Neisseria
           meningitidis WUE 2594]
 gi|325132653|gb|EGC55339.1| ribonuclease PH [Neisseria meningitidis M6190]
 gi|325134681|gb|EGC57321.1| ribonuclease PH [Neisseria meningitidis M13399]
 gi|325138569|gb|EGC61132.1| ribonuclease PH [Neisseria meningitidis ES14902]
 gi|325198624|gb|ADY94080.1| ribonuclease PH [Neisseria meningitidis G2136]
 gi|325201806|gb|ADY97260.1| ribonuclease PH [Neisseria meningitidis M01-240149]
 gi|325205751|gb|ADZ01204.1| ribonuclease PH [Neisseria meningitidis M04-240196]
 gi|325208441|gb|ADZ03893.1| ribonuclease PH [Neisseria meningitidis NZ-05/33]
          Length = 242

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 117/239 (48%), Positives = 171/239 (71%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+S R  + +R+I +T     + +GSCL++ G+T ++ TA+++E VP ++R    GW+T
Sbjct: 5   IRIS-RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVT 63

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQ
Sbjct: 64  AEYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL   +  +   S+       ++  VAA+S G++ G P++DLDY 
Sbjct: 124 ADGGTRTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSVGVVNGVPLLDLDYP 181

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT SG I+E+QG+AE A FS D    ++ LA+  I +L++ Q++ +S
Sbjct: 182 EDSGCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALS 240


>gi|319942267|ref|ZP_08016582.1| ribonuclease PH [Sutterella wadsworthensis 3_1_45B]
 gi|319804140|gb|EFW01040.1| ribonuclease PH [Sutterella wadsworthensis 3_1_45B]
          Length = 277

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 118/240 (49%), Positives = 157/240 (65%), Gaps = 2/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  + +R + +TRR +KYAEGS L+  GDTH+L TA++   VP ++R    GW+TA
Sbjct: 35  RPDGRAVDALRPVEITRRFTKYAEGSVLMCAGDTHVLCTASVTVGVPNFLRGKGEGWVTA 94

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYG+LPRSTG R  REA  G+Q GR+QEIQR+IGR+LR+VVD   LG   I IDCDV+QA
Sbjct: 95  EYGLLPRSTGTRTDREAARGKQTGRTQEIQRLIGRSLRAVVDRKKLGEHTIQIDCDVLQA 154

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+ITGAW+AL D +  M   +        +   V+A+S GM  G P++DL+Y E
Sbjct: 155 DGGTRCASITGAWIALRDAVDWM--LAKGMISEDPILAQVSAVSVGMWSGEPVLDLNYAE 212

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  D D N VMT +G  VE+QG+AE   FS+     +L LAK   A+L   Q+  ++ +
Sbjct: 213 DSASDTDMNVVMTSAGKYVEIQGTAEGDPFSEGDLAKLLALAKKGNAELAAFQRKALTEK 272


>gi|325128546|gb|EGC51419.1| ribonuclease PH [Neisseria meningitidis N1568]
 gi|325143439|gb|EGC65766.1| ribonuclease PH [Neisseria meningitidis M01-240013]
          Length = 242

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 115/236 (48%), Positives = 168/236 (71%), Gaps = 2/236 (0%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
           + R  + +R+I +T     + +GSCL++ G+T ++ TA+++E VP ++R    GW+TAEY
Sbjct: 7   TSRAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVTAEY 66

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           GMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADG
Sbjct: 67  GMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
           GTRTA+ITGA+VAL   +  +   S+       ++  VAA+S G++ G P++DLDY EDS
Sbjct: 127 GTRTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDS 184

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
             D D N VMT SG I+E+QG+AE A FS D    ++ LA+  I +L++ Q++ +S
Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALS 240


>gi|256004871|ref|ZP_05429845.1| ribonuclease PH [Clostridium thermocellum DSM 2360]
 gi|281416900|ref|ZP_06247920.1| ribonuclease PH [Clostridium thermocellum JW20]
 gi|255991181|gb|EEU01289.1| ribonuclease PH [Clostridium thermocellum DSM 2360]
 gi|281408302|gb|EFB38560.1| ribonuclease PH [Clostridium thermocellum JW20]
 gi|316941052|gb|ADU75086.1| ribonuclease PH [Clostridium thermocellum DSM 1313]
          Length = 263

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 114/240 (47%), Positives = 163/240 (67%), Gaps = 6/240 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR ++ +R + +TR   K+AEGS L++ GDT ++ TAT+++KVP + +NT  GW+T
Sbjct: 2   LRIDGRGQSDLRPVKITRNYIKHAEGSVLIEMGDTKVICTATVDDKVPPFKKNTGEGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  R+    +  GRSQEIQR+IGRALRSVV+L+ LG R+IIIDCDVIQ
Sbjct: 62  AEYSMLPRATAARNPRDISKLKLSGRSQEIQRLIGRALRSVVNLNLLGEREIIIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMED--CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ADGGTRTA+ITG +VAL D  + + D     K  ++  L    AA+S G++ G  ++DL 
Sbjct: 122 ADGGTRTASITGGFVALVDACKKLVDDGIIEKIPVTDFL----AAVSVGIVDGVEMLDLC 177

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y EDS    D N VMT  G  +E+Q + E+  F ++ F  +L+ A+  I+ LI++QKD +
Sbjct: 178 YMEDSNAATDMNVVMTSKGEFIEIQATGEQLPFKKEQFDKLLSFAEKGISQLIEIQKDAL 237


>gi|237743440|ref|ZP_04573921.1| ribonuclease ph [Fusobacterium sp. 7_1]
 gi|229433219|gb|EEO43431.1| ribonuclease ph [Fusobacterium sp. 7_1]
          Length = 434

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 111/241 (46%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T  GW+T
Sbjct: 2   VREDGRNFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+IGRALR+ +DL  LG R I IDCDVIQ
Sbjct: 62  AEYSMLPRATNERNPREASKGKLAGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG ++AL   ++ +     +      L  +VAAIS G +    +VDL Y 
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKL--LKEEILEENPLISNVAAISVGKVNSELMVDLKYS 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   +VD N +M   G  +EVQG+ E +TF++     +L+LA++ I  LIKLQ ++I+ 
Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIKLQDEIINQ 239

Query: 241 E 241
           E
Sbjct: 240 E 240


>gi|312134722|ref|YP_004002060.1| ribonuclease ph [Caldicellulosiruptor owensensis OL]
 gi|311774773|gb|ADQ04260.1| ribonuclease PH [Caldicellulosiruptor owensensis OL]
          Length = 258

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 116/241 (48%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  N++R I +TR   KYAEGSCL++ G+T ++ TAT+++KVP + + +  GWIT
Sbjct: 1   MRQDQRGYNELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  R+    R  GRS EIQR+IGRALR+ ++  ALG R IIIDCDVIQ
Sbjct: 61  AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG ++A+ D  + + D   K   +  +   VAA+S G+  G  ++DL + 
Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPITDFVAAVSVGICDGVEMLDLCFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VM D G  +E+QG+AE A FS D F  +L L K  I  +I++QK+V+  
Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWDQFQKLLELGKQGIQKIIEVQKEVLGQ 238

Query: 241 E 241
           +
Sbjct: 239 D 239


>gi|293189253|ref|ZP_06607976.1| tRNA nucleotidyltransferase [Actinomyces odontolyticus F0309]
 gi|292821716|gb|EFF80652.1| tRNA nucleotidyltransferase [Actinomyces odontolyticus F0309]
          Length = 255

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 112/235 (47%), Positives = 157/235 (66%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q+R +S+TR  S   EGS L++FG+T +L  A+  E VP W R++  GW+T
Sbjct: 6   LRADGRTPSQLRPVSITRGWSGTGEGSILIEFGNTRVLCVASFTEGVPRWKRDSGEGWVT 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            EY MLPR+T  R  RE+V G+ GGR+QEI R+IGR+LR +VD+SALG   I++DCDV++
Sbjct: 66  GEYSMLPRATEQRSSRESVKGKVGGRTQEISRLIGRSLRGIVDVSALGENTIVLDCDVLR 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D +   ++       ++VL   ++AIS G++ G P++DL Y 
Sbjct: 126 ADGGTRTAAITGAYVALADAVSWAKEQGILKPSAKVLTDSISAISVGVIDGTPMLDLPYV 185

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           ED   + D N V T  G  +EVQG+AE A F++D    +L+LA    A L + QK
Sbjct: 186 EDVRAETDMNVVQTGDGRFIEVQGTAEHAPFNRDELNELLDLATLGNARLAEAQK 240


>gi|37928170|pdb|1UDQ|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
           T125a Mutant From Aquifex Aeolicus
          Length = 255

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 116/239 (48%), Positives = 159/239 (66%), Gaps = 6/239 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+E+Q+R +S+ R   +Y EGSCL+ FG T ++ TA++ E VP W++    GWIT
Sbjct: 1   MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V GR GGR+ EIQRMIGRA+R+ V+L+ +G R I +DCDVIQ
Sbjct: 61  AEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCL--QHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ADGG RTAAITGA+VA+ D +   H E    +      +K  VAA+S G++    ++DL+
Sbjct: 121 ADGGARTAAITGAFVAVADAIIKLHKEGIIEETP----IKDFVAAVSVGIVNDRILLDLN 176

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           + EDS   VD N V T SG + EV    E  +F++D    ML+LA+  I +LI+LQK +
Sbjct: 177 FEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKKL 235


>gi|225175207|ref|ZP_03729203.1| ribonuclease PH [Dethiobacter alkaliphilus AHT 1]
 gi|225169383|gb|EEG78181.1| ribonuclease PH [Dethiobacter alkaliphilus AHT 1]
          Length = 239

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 164/239 (68%), Gaps = 6/239 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ ++MR + +T    KY EGS L++ GDT ++ TA++EEKVP ++R    GW+T
Sbjct: 1   MRVDGRRTDEMRPLKITPEFLKYPEGSVLIEVGDTRVICTASVEEKVPPFLRGENKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE   G+  GRS EIQR+IGRALRSVVDL ALG R + +DCDV+Q
Sbjct: 61  AEYAMLPRATQIRTMRE--RGKISGRSSEIQRLIGRALRSVVDLKALGERTVWVDCDVVQ 118

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTAAI+G++VAL+  L  +        LS+V +  ++AA S G++    ++DL +
Sbjct: 119 ADGGTRTAAISGSFVALYLALSKLVAAGT---LSEVPVTDYLAATSIGIVDDKLMLDLAF 175

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS  DVD N VMT SG+IVEVQG+AE A FS+     M++LA   I +++  QK ++
Sbjct: 176 SEDSKADVDMNVVMTGSGNIVEVQGTAEGAAFSRQAMDEMMDLAAKGIDEIVDYQKRLL 234


>gi|256824846|ref|YP_003148806.1| RNAse PH [Kytococcus sedentarius DSM 20547]
 gi|256688239|gb|ACV06041.1| RNAse PH [Kytococcus sedentarius DSM 20547]
          Length = 288

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 111/224 (49%), Positives = 151/224 (67%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R++ +TR    +A GS L++FG T +L  A+ +  VP W++    GW+T 
Sbjct: 23  RHDGRAPDQLRDVRITRGWLDHAAGSVLIEFGRTRVLCAASFQPGVPRWLKGQGTGWVTG 82

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V G+  GR+QEI R++GRALR+ VD SALG   I+IDCDV+QA
Sbjct: 83  EYAMLPAATHTRSDRESVKGKVKGRTQEISRLLGRALRAAVDTSALGENTIVIDCDVLQA 142

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGAWVAL D +   +   +    +QVL+  + AIS G++ G P++DLDY E
Sbjct: 143 DGGTRTAAITGAWVALADAVAAGKASGDIPANAQVLRDSIQAISVGIVDGQPVLDLDYPE 202

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
           DS    D N VMT +G +VEVQG+AE  TF +    A+L+LA+D
Sbjct: 203 DSGAGADMNVVMTGAGELVEVQGTAEGQTFDRAMLNALLDLAQD 246


>gi|227494822|ref|ZP_03925138.1| ribonuclease PH [Actinomyces coleocanis DSM 15436]
 gi|226831274|gb|EEH63657.1| ribonuclease PH [Actinomyces coleocanis DSM 15436]
          Length = 246

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 116/242 (47%), Positives = 162/242 (66%), Gaps = 5/242 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R + +TR     AEGSCL++FG+T +L  A+L E VP W + +  GW+TA
Sbjct: 5   RADGRANNQLRPVKITRNWIANAEGSCLIEFGNTRVLCVASLTEGVPRWRQGSGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R +RE+V G+ GGR+ EI R+IGR+LR+VVD ++LG   I++DCDV+QA
Sbjct: 65  EYSMLPRATSQRSQRESVKGKIGGRTHEISRLIGRSLRAVVDTASLGENTIVLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQL----SQVLKGHVAAISCGMLCGYPIVDL 177
           DGGTRTA+ITGA+VAL D ++  +  +    L     +VLK  VAAIS G++ G P +DL
Sbjct: 125 DGGTRTASITGAYVALADAIKWGQK-NGLIPLDKAHQKVLKDSVAAISVGIIDGEPRLDL 183

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            Y ED   + D N V+T SG  +EVQG+AE A F++    A+L+LA+    +L   Q+  
Sbjct: 184 PYEEDVRAETDMNVVVTGSGEFIEVQGTAEHAPFTRAELGALLDLAEGGCKELAVFQEVA 243

Query: 238 IS 239
           +S
Sbjct: 244 LS 245


>gi|297194142|ref|ZP_06911540.1| ribonuclease PH [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721967|gb|EDY65875.1| ribonuclease PH [Streptomyces pristinaespiralis ATCC 25486]
          Length = 244

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 113/237 (47%), Positives = 153/237 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS L+ FGDT +  TA+  E VP W + +  GW+T+
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASFTEGVPRWRKGSGEGWVTS 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  RE+V G+ GGR+ EI R+IGR+LR+V+D  ALG   +++DCDV+QA
Sbjct: 63  EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L G VAA+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAIAWAQAKKIVKPGRKPLTGTVAAVSVGIVDGTPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   + D N V T  G  VEVQG+AE   F +    A+L+LA    ADL  LQ + +
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLATGGCADLAALQAEAL 239


>gi|254805268|ref|YP_003083489.1| ribonuclease PH [Neisseria meningitidis alpha14]
 gi|254668810|emb|CBA06795.1| ribonuclease PH [Neisseria meningitidis alpha14]
 gi|325136604|gb|EGC59205.1| ribonuclease PH [Neisseria meningitidis M0579]
          Length = 242

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 115/236 (48%), Positives = 168/236 (71%), Gaps = 2/236 (0%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
           + R  + +R+I +T     + +GSCL++ G+T ++ TA+++E VP ++R    GW+TAEY
Sbjct: 7   TSRAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVTAEY 66

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           GMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADG
Sbjct: 67  GMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
           GTRTA+ITGA+VAL   +  +   S+       ++  VAA+S G++ G P++DLDY EDS
Sbjct: 127 GTRTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDS 184

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
             D D N VMT SG I+E+QG+AE A FS D    ++ LA+  I +L++ Q++ +S
Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALS 240


>gi|256026996|ref|ZP_05440830.1| ribonuclease PH [Fusobacterium sp. D11]
 gi|289764980|ref|ZP_06524358.1| ribonuclease ph [Fusobacterium sp. D11]
 gi|289716535|gb|EFD80547.1| ribonuclease ph [Fusobacterium sp. D11]
          Length = 428

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 111/241 (46%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T  GW+T
Sbjct: 2   VREDGRNFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+IGRALR+ +DL  LG R I IDCDVIQ
Sbjct: 62  AEYSMLPRATNERNPREASKGKLAGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG ++AL   ++ +     +      L  +VAAIS G +    +VDL Y 
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKL--LKEEILEENPLISNVAAISVGKVNSELMVDLKYS 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   +VD N +M   G  +EVQG+ E +TF++     +L+LA++ I  LIKLQ ++I+ 
Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIKLQDEIINQ 239

Query: 241 E 241
           E
Sbjct: 240 E 240


>gi|268593302|ref|ZP_06127523.1| tRNA nucleotidyltransferase [Providencia rettgeri DSM 1131]
 gi|291310999|gb|EFE51452.1| tRNA nucleotidyltransferase [Providencia rettgeri DSM 1131]
          Length = 237

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 120/238 (50%), Positives = 163/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + RQ +QMR I++TR  +K+AEGS L++FGDT +L  AT+EE VP +++    GW+T
Sbjct: 1   MRPADRQADQMRPITITRNYTKHAEGSVLIEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+Q GR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATNSRNQREAARGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+GA VAL D L +M +   K   S  LK  VAA+S G++    + DL+Y 
Sbjct: 121 ADGGTRTAAISGACVALVDALNNMVE-QGKIAKSP-LKSMVAAVSVGIVNQEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VM D G ++EVQG+AE   FS +   A+L LAK  +  + + Q++ +
Sbjct: 179 EDSAAETDMNVVMMDDGRMIEVQGTAEGEPFSHEELLALLALAKTGLNTIFEAQREAL 236


>gi|320106016|ref|YP_004181606.1| ribonuclease PH [Terriglobus saanensis SP1PR4]
 gi|319924537|gb|ADV81612.1| ribonuclease PH [Terriglobus saanensis SP1PR4]
          Length = 246

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 120/238 (50%), Positives = 158/238 (66%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R  GR   Q+R I LT      AEGS L++ G+T +L  AT+E  VP W+RN+  GW+T
Sbjct: 9   FRPGGRTAAQLRSIKLTPDYVATAEGSVLIEAGNTRVLCNATIEPSVPGWLRNSGKGWVT 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+ GGR+ EIQR+IGR+LRSVVDL ALG R II+DCDV+Q
Sbjct: 69  AEYSMLPRATLTRTPRESERGKIGGRTHEIQRLIGRSLRSVVDLKALGERMIILDCDVLQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL   L  +   +    +S  LK  VAA S G++ G  ++DL Y 
Sbjct: 129 ADGGTRTAAITGACVALAMALDKLV-AAGTLPVSP-LKQLVAATSVGIVDGNILLDLAYE 186

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  DVD N VMT+ G +VEVQ +AE  T+++    A+L++A   + +L+  Q+ V+
Sbjct: 187 EDSRADVDMNVVMTEDGGLVEVQATAEHNTYTRPQLDALLDIAASGVKNLLVHQRSVL 244


>gi|269123373|ref|YP_003305950.1| ribonuclease PH [Streptobacillus moniliformis DSM 12112]
 gi|268314699|gb|ACZ01073.1| ribonuclease PH [Streptobacillus moniliformis DSM 12112]
          Length = 231

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 113/238 (47%), Positives = 152/238 (63%), Gaps = 12/238 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ N++REI +TR   KY EGS L++FG+T ++   T+EEKVP +++N   GW+T
Sbjct: 1   MRTNNRKNNELREIKITREYIKYPEGSVLIEFGNTKVICNVTVEEKVPPFLKNLGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R KREA  G+  GR+ EIQR+IGR+LR+ +DL  LG R +I+DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNKREASQGKLSGRTMEIQRLIGRSLRAALDLKKLGERTLIVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL-----KGHVAAISCGMLCGYPIV 175
           ADGGTRTA+ITG ++A       ME   NK  LS +L     +  VAAIS G +     +
Sbjct: 121 ADGGTRTASITGGYLA-------MEIAINKLILSGLLNENPIRAKVAAISVGKVNNELFL 173

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           DL++ EDS  DVD N VM   G  +E+QG+ E  TF++      + LA      L KL
Sbjct: 174 DLEFYEDSHADVDMNIVMNSKGEFIEIQGTGEDTTFTKQELDKFIELASLGFEKLFKL 231


>gi|125972712|ref|YP_001036622.1| ribonuclease PH [Clostridium thermocellum ATCC 27405]
 gi|125712937|gb|ABN51429.1| RNAse PH [Clostridium thermocellum ATCC 27405]
          Length = 263

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 114/240 (47%), Positives = 163/240 (67%), Gaps = 6/240 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR ++ +R + +TR   K+AEGS L++ GDT ++ TAT+++KVP + +NT  GW+T
Sbjct: 2   LRIDGRGQSDLRPVKITRNYIKHAEGSVLIEMGDTKVICTATVDDKVPPFKKNTGEGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  R+    +  GRSQEIQR+IGRALRSVV+L+ LG R+IIIDCDVIQ
Sbjct: 62  AEYSMLPRATAARNPRDISKLKLSGRSQEIQRLIGRALRSVVNLNLLGEREIIIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMED--CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ADGGTRTA+ITG +VAL D  + + D     K  ++  L    AA+S G++ G  ++DL 
Sbjct: 122 ADGGTRTASITGGFVALVDACKKLVDDGIIEKIPVTDFL----AAVSVGIVDGEEMLDLC 177

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y EDS    D N VMT  G  +E+Q + E+  F ++ F  +L+ A+  I+ LI++QKD +
Sbjct: 178 YMEDSNAATDMNVVMTSKGEFIEIQATGEQLPFKKEQFDKLLSFAEKGISQLIEIQKDAL 237


>gi|225874384|ref|YP_002755843.1| tRNA nucleotidyltransferase [Acidobacterium capsulatum ATCC 51196]
 gi|225793778|gb|ACO33868.1| tRNA nucleotidyltransferase [Acidobacterium capsulatum ATCC 51196]
          Length = 246

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 114/239 (47%), Positives = 158/239 (66%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ ++MR + LT   +   EGS L++ G T +L  AT+E+ VP W+RN+  GW+TA
Sbjct: 8   RASGRRPDEMRPVKLTAGYTSMPEGSVLIEVGHTRVLCAATVEQGVPGWMRNSGRGWVTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  RE+  G+ GGR+ EIQR+IGR+LR+VVD+ ALG R +I+DCDV+QA
Sbjct: 68  EYGMLPRATLTRTARESERGKVGGRTHEIQRLIGRSLRAVVDMQALGERTVILDCDVLQA 127

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA  AL    Q +         +  L+  VAA S G++ G  ++DL Y E
Sbjct: 128 DGGTRTAAITGACTALAIACQRLVKAGTLK--ASPLRQLVAATSVGIVEGTTLLDLAYEE 185

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  +VD N VMT+ G +VEVQ +AER  F +     M++ A+  I +L+ LQ+  + +
Sbjct: 186 DSQAEVDMNLVMTEDGGLVEVQATAERQAFPRARMMEMMDYAEKGIRELLALQRAAMES 244


>gi|294101305|ref|YP_003553163.1| ribonuclease PH [Aminobacterium colombiense DSM 12261]
 gi|293616285|gb|ADE56439.1| ribonuclease PH [Aminobacterium colombiense DSM 12261]
          Length = 260

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 117/240 (48%), Positives = 161/240 (67%), Gaps = 6/240 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ N++R IS  R  + YAEG+ L  FGDT ++ TA++E++VP ++R +  GWI+
Sbjct: 6   LRSDGRKFNEIRPISFQRHFTCYAEGAVLACFGDTKVICTASVEDRVPPFLRGSGQGWIS 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  R    G   GRS EIQR+IGR+LR+  DLS LG R I +DCDVIQ
Sbjct: 66  AEYAMLPRATAERTSRMTSKGAISGRSHEIQRLIGRSLRASADLSLLGERTIWLDCDVIQ 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ADGGTRTAAI+GA+VAL D ++ +  +D   K      +K  VAA+S G + G  ++DL 
Sbjct: 126 ADGGTRTAAISGAFVALFDAMRCLKAQDVIEKIP----VKSFVAAVSVGKIEGSLLLDLC 181

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y EDS  DVD N VM     ++E+QG+ ER TF++D F AML+LA+D I  ++  Q +V+
Sbjct: 182 YEEDSCADVDCNVVMNGDKQLIEIQGTGERGTFARDEFDAMLDLAEDGIQTIMFSQAEVL 241


>gi|51891481|ref|YP_074172.1| ribonuclease PH (tRNA nucleotidyltransferase) [Symbiobacterium
           thermophilum IAM 14863]
 gi|61215887|sp|Q67SL5|RNPH_SYMTH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|51855170|dbj|BAD39328.1| ribonuclease PH (tRNA nucleotidyltransferase) [Symbiobacterium
           thermophilum IAM 14863]
          Length = 273

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 123/236 (52%), Positives = 166/236 (70%), Gaps = 2/236 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR  ++MR + +TR  + +AEGS L++ G T ++ TATLE++VP ++R    GWIT
Sbjct: 1   MRQDGRLPHEMRPVRITRHYNIHAEGSVLIEVGRTRVICTATLEDRVPPFLRGRGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R  REA  GRQGGR+ EIQR+IGRALRSV+DL+ALG R +IIDCDVIQ
Sbjct: 61  AEYGMLPRATGQRTAREAARGRQGGRTMEIQRLIGRALRSVIDLAALGERTLIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA+ D L  +       +L   +K ++AA S G++ G P++DL Y 
Sbjct: 121 ADGGTRTASITGAYVAMVDALAGLRAAGLIDRLP--VKDYLAATSVGVVGGVPVLDLTYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           EDS   VD N VMT SG +VE+QG+ E   F++     +L LA+  +  L+ LQ++
Sbjct: 179 EDSRAAVDLNLVMTGSGEVVEIQGTGEERPFTRRELEELLALAESGVRRLVALQRE 234


>gi|148272475|ref|YP_001222036.1| ribonuclease PH [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830405|emb|CAN01340.1| ribonuclease PH (tRNA nucleotidyltransferase) [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 245

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 113/212 (53%), Positives = 146/212 (68%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+REI++ R  S+ AEGS L+ FG T +L TA+   +VP W   +  GW+TA
Sbjct: 7   RHDGRTADQLREITIERNWSEQAEGSALISFGRTRVLCTASFTNRVPRWKAGSGQGWVTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R+ REAV G+ GGR+ EI R+IGR+LR+VVD+ ALG   I+IDCDV+QA
Sbjct: 67  EYAMLPRATNERMDREAVKGKVGGRTHEISRLIGRSLRAVVDMKALGENTIVIDCDVLQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D L+   +     Q +  LK  VAA+S G++ G P++DL Y E
Sbjct: 127 DGGTRTAAITGAYVALADALEWGREKKFIAQRATPLKDSVAAVSVGIVDGKPLLDLAYVE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
           D   + D N VMT SG  VEVQG+AE A F +
Sbjct: 187 DVRAETDMNVVMTGSGSFVEVQGTAEGAPFDR 218


>gi|37928168|pdb|1UDO|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
           R86a Mutant From Aquifex Aeolicus
          Length = 255

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 116/239 (48%), Positives = 159/239 (66%), Gaps = 6/239 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+E+Q+R +S+ R   +Y EGSCL+ FG T ++ TA++ E VP W++    GWIT
Sbjct: 1   MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V GR GG + EIQRMIGRA+R+ V+L+ +G R I +DCDVIQ
Sbjct: 61  AEYSMLPRATQQRTIRESVQGRIGGATHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCL--QHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ADGGTRTAAITGA+VA+ D +   H E    +      +K  VAA+S G++    ++DL+
Sbjct: 121 ADGGTRTAAITGAFVAVADAIIKLHKEGIIEETP----IKDFVAAVSVGIVNDRILLDLN 176

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           + EDS   VD N V T SG + EV    E  +F++D    ML+LA+  I +LI+LQK +
Sbjct: 177 FEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKKL 235


>gi|37928172|pdb|1UDS|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
           R126a Mutant From Aquifex Aeolicus
          Length = 255

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 116/239 (48%), Positives = 159/239 (66%), Gaps = 6/239 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+E+Q+R +S+ R   +Y EGSCL+ FG T ++ TA++ E VP W++    GWIT
Sbjct: 1   MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V GR GGR+ EIQRMIGRA+R+ V+L+ +G R I +DCDVIQ
Sbjct: 61  AEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCL--QHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ADGGT TAAITGA+VA+ D +   H E    +      +K  VAA+S G++    ++DL+
Sbjct: 121 ADGGTATAAITGAFVAVADAIIKLHKEGIIEETP----IKDFVAAVSVGIVNDRILLDLN 176

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           + EDS   VD N V T SG + EV    E  +F++D    ML+LA+  I +LI+LQK +
Sbjct: 177 FEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKKL 235


>gi|163783654|ref|ZP_02178642.1| RNase PH [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881059|gb|EDP74575.1| RNase PH [Hydrogenivirga sp. 128-5-R1-1]
          Length = 255

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 113/235 (48%), Positives = 160/235 (68%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+E+++R + + R    + EGSCL++FGDT ++ TA++ E VP +++    GWIT
Sbjct: 1   MRKDGRREDELRPVKIVRDFLSHPEGSCLIEFGDTKVICTASVTESVPPFLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+  GR+ EIQRMIGRA+R+ VDL+ LG R + +DCDVIQ
Sbjct: 61  AEYSMLPRATHTRNIRESVQGKISGRTHEIQRMIGRAMRTAVDLTKLGERTLWVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA+ D L  + +  +    S  +K  VAA+S G++ G P++DL++ 
Sbjct: 121 ADGGTRTASITGAFVAVADALIKLYE--DGIIQSVPIKDFVAAVSVGIVNGKPLLDLNFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS   VD N V T  G   EVQ   E  TFS+D    +L+LA   I++L++LQ+
Sbjct: 179 EDSMAQVDMNVVGTGEGRFSEVQSMGEEYTFSRDELDNLLDLALKGISELVELQR 233


>gi|238764323|ref|ZP_04625274.1| Ribonuclease PH [Yersinia kristensenii ATCC 33638]
 gi|238697474|gb|EEP90240.1| Ribonuclease PH [Yersinia kristensenii ATCC 33638]
          Length = 238

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 114/212 (53%), Positives = 151/212 (71%), Gaps = 2/212 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPAGRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +   + K + +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNKLV-AAGKLK-ANPMKGLVAAVSVGIVKGEALCDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFS 212
           EDS  + D N VM + G ++EVQG+AE   FS
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFS 210


>gi|110799614|ref|YP_696926.1| ribonuclease PH [Clostridium perfringens ATCC 13124]
 gi|123344527|sp|Q0TN64|RNPH_CLOP1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|110674261|gb|ABG83248.1| ribonuclease PH [Clostridium perfringens ATCC 13124]
          Length = 248

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 114/243 (46%), Positives = 162/243 (66%), Gaps = 6/243 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR++ Q+R + +TR  +KYAEGS L++ GDT +L TA++EEKVP +++ +  GWIT
Sbjct: 1   MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASIEEKVPPFLKGSGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST +R +RE    +  GR+ EIQR+IGRALRS VD+ ALG + I IDCDV+Q
Sbjct: 61  AEYNMLPRSTQSRKQREINKLKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQ--HMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ADGGTRT +ITG++VAL D +   H +   N +     ++  V+A+S G++    ++DL 
Sbjct: 121 ADGGTRTTSITGSFVALVDAVNKLHQKKPFNVYP----IRHFVSAVSVGIVGEEKVLDLC 176

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y ED    VD N VMT+ G  +E+QG+ E   FS+     +LNLA+     +I+ QKD +
Sbjct: 177 YEEDHVAKVDMNVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQAQKDAL 236

Query: 239 SNE 241
             +
Sbjct: 237 KTD 239


>gi|68535568|ref|YP_250273.1| ribonuclease PH [Corynebacterium jeikeium K411]
 gi|68263167|emb|CAI36655.1| ribonuclease PH [Corynebacterium jeikeium K411]
          Length = 256

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 110/241 (45%), Positives = 161/241 (66%), Gaps = 2/241 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R + +TR  +    GS LV+FG+T ++ TA++EE VP + +++  GW+TA
Sbjct: 18  RADGRATDELRPVRITRGFTSNPAGSVLVEFGNTRVMCTASVEEGVPRFKKDSGEGWLTA 77

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R+ RE++ G+  GR+QEI R++GRALR+ VDL  LG   + IDCDV+QA
Sbjct: 78  EYAMLPASTHERMPRESMKGKVKGRTQEISRLVGRALRAAVDLKELGENTVNIDCDVLQA 137

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D L  ++  +      Q L+  VAA+S G++ G P +DL Y E
Sbjct: 138 DGGTRTAAITGAYVALADALAVLQ--ARGVVPGQPLRAPVAAVSVGIIDGVPCLDLPYEE 195

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  DVD N  MT  G  VE+QG+ E A F+++    +L+LA+  + +LI+ Q+  ++ E
Sbjct: 196 DSRADVDMNVAMTAEGRFVEIQGTGENAEFTREELNTLLDLAEGGLRELIEAQRAALAQE 255

Query: 242 V 242
           +
Sbjct: 256 L 256


>gi|228993220|ref|ZP_04153141.1| Ribonuclease PH [Bacillus pseudomycoides DSM 12442]
 gi|228999269|ref|ZP_04158849.1| Ribonuclease PH [Bacillus mycoides Rock3-17]
 gi|229006824|ref|ZP_04164457.1| Ribonuclease PH [Bacillus mycoides Rock1-4]
 gi|228754446|gb|EEM03858.1| Ribonuclease PH [Bacillus mycoides Rock1-4]
 gi|228760466|gb|EEM09432.1| Ribonuclease PH [Bacillus mycoides Rock3-17]
 gi|228766546|gb|EEM15188.1| Ribonuclease PH [Bacillus pseudomycoides DSM 12442]
          Length = 245

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 115/241 (47%), Positives = 162/241 (67%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GRQ  ++R I L     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGRQAAELRNIHLHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++    +V DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEDQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  GH VEVQG+ E ATFS+     +L+ A++ I  LI+ QK+ + 
Sbjct: 179 AEDSQADVDMNVIMTGKGHFVEVQGTGEEATFSRAELNELLDAAENGILQLIEKQKEALG 238

Query: 240 N 240
           +
Sbjct: 239 D 239


>gi|296314065|ref|ZP_06864006.1| tRNA nucleotidyltransferase [Neisseria polysaccharea ATCC 43768]
 gi|296839317|gb|EFH23255.1| tRNA nucleotidyltransferase [Neisseria polysaccharea ATCC 43768]
          Length = 241

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 114/232 (49%), Positives = 165/232 (71%), Gaps = 2/232 (0%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
           + R  + +R+I +T     + +GSCL++ G+T ++ TA+++E VP ++R    GW+TAEY
Sbjct: 7   TSRAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVTAEY 66

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           GMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADG
Sbjct: 67  GMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
           GTRTA+ITGA+VAL   +  +   S+       ++  VAA+S G++ G P++DLDY EDS
Sbjct: 127 GTRTASITGAFVALQIAVGKL--VSDGILTENPIREAVAAVSAGVVNGVPLLDLDYPEDS 184

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
             D D N VMT SG I+E+QG+AE A FS +    ++ LA+  I +L++ QK
Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEGAPFSLEELGKLIGLAEKGIRELVRYQK 236


>gi|237741270|ref|ZP_04571751.1| ribonuclease ph [Fusobacterium sp. 4_1_13]
 gi|229430802|gb|EEO41014.1| ribonuclease ph [Fusobacterium sp. 4_1_13]
          Length = 434

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 111/241 (46%), Positives = 160/241 (66%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T  GW+T
Sbjct: 2   LREDGRKFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+IGRALR+ +DL  LG R I IDCDVIQ
Sbjct: 62  AEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG ++AL   ++ + D   +      L  +VAAIS G +    +VDL Y 
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKLLD--EEILEENPLISNVAAISVGKINSELMVDLKYS 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   +VD N +M   G  +EVQG+ E +TF++     +L+LA++ I  LI+LQ  +I+ 
Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQDKIINQ 239

Query: 241 E 241
           E
Sbjct: 240 E 240


>gi|210621777|ref|ZP_03292806.1| hypothetical protein CLOHIR_00751 [Clostridium hiranonis DSM 13275]
 gi|210154541|gb|EEA85547.1| hypothetical protein CLOHIR_00751 [Clostridium hiranonis DSM 13275]
          Length = 449

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 117/238 (49%), Positives = 157/238 (65%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL  R  +++R + +T   +KYA GS L++ G+T ++ TAT+E+KVP ++RNT  GWI A
Sbjct: 3   RLGNRANDEIRPVKITTNFTKYAAGSVLIEMGETKVICTATVEDKVPPFLRNTGTGWINA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R  R++V G+  GR+QEIQR+IGRA+RSV++L  LG R I +DCDVIQA
Sbjct: 63  EYSMLPSSTQQRKIRDSVRGKIDGRTQEIQRLIGRAIRSVIELDLLGERTIWVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITG +VA    +  +    NK      +K  V+AIS G+L    I+DL Y E
Sbjct: 123 DGGTRTASITGGFVAAAQAIYGL--YQNKEIKKLPIKNFVSAISAGVLNDEHILDLCYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS   VD NFVMTD G  VEVQG+ E A FS++    +L L +    +LIK+Q+  I 
Sbjct: 181 DSAAKVDMNFVMTDKGEFVEVQGTGEEAPFSREDLNKLLELGEKGNKELIKIQRAAIP 238


>gi|241760285|ref|ZP_04758380.1| tRNA nucleotidyltransferase [Neisseria flavescens SK114]
 gi|241319163|gb|EER55641.1| tRNA nucleotidyltransferase [Neisseria flavescens SK114]
          Length = 242

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 115/232 (49%), Positives = 167/232 (71%), Gaps = 2/232 (0%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
           +GR  + +R I +T     +A+GSCL++ G+T ++ TA+++E VP ++R  + GW+TAEY
Sbjct: 7   TGRAADSLRNIKITPNFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKEQGWVTAEY 66

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           GMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADG
Sbjct: 67  GMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
           GTRTA+ITGA+VAL   +  +   S+       ++  VAA+S G++ G P++DLDY EDS
Sbjct: 127 GTRTASITGAYVALQIAVDKL--LSDGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDS 184

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
             D D N +MT SG I+E+QG+AE A FS +    ++ LA   IA+L++ Q+
Sbjct: 185 GCDSDVNIIMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQQ 236


>gi|22124017|ref|NP_667440.1| ribonuclease PH [Yersinia pestis KIM 10]
 gi|45439910|ref|NP_991449.1| ribonuclease PH [Yersinia pestis biovar Microtus str. 91001]
 gi|51594399|ref|YP_068590.1| ribonuclease PH [Yersinia pseudotuberculosis IP 32953]
 gi|108809489|ref|YP_653405.1| ribonuclease PH [Yersinia pestis Antiqua]
 gi|108813966|ref|YP_649733.1| ribonuclease PH [Yersinia pestis Nepal516]
 gi|145601101|ref|YP_001165177.1| ribonuclease PH [Yersinia pestis Pestoides F]
 gi|150260892|ref|ZP_01917620.1| ribonuclease PH [Yersinia pestis CA88-4125]
 gi|153946899|ref|YP_001399057.1| ribonuclease PH [Yersinia pseudotuberculosis IP 31758]
 gi|162421592|ref|YP_001604689.1| ribonuclease PH [Yersinia pestis Angola]
 gi|165926075|ref|ZP_02221907.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165936276|ref|ZP_02224845.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011471|ref|ZP_02232369.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213648|ref|ZP_02239683.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167402127|ref|ZP_02307604.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167419312|ref|ZP_02311065.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426642|ref|ZP_02318395.1| ribonuclease PH [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167468220|ref|ZP_02332924.1| ribonuclease PH [Yersinia pestis FV-1]
 gi|170026367|ref|YP_001722872.1| ribonuclease PH [Yersinia pseudotuberculosis YPIII]
 gi|186893387|ref|YP_001870499.1| ribonuclease PH [Yersinia pseudotuberculosis PB1/+]
 gi|218927265|ref|YP_002345140.1| ribonuclease PH [Yersinia pestis CO92]
 gi|229836156|ref|ZP_04456324.1| ribonuclease PH [Yersinia pestis Pestoides A]
 gi|229839893|ref|ZP_04460052.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229841975|ref|ZP_04462130.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. India 195]
 gi|229904496|ref|ZP_04519607.1| ribonuclease PH [Yersinia pestis Nepal516]
 gi|270488496|ref|ZP_06205570.1| tRNA nucleotidyltransferase [Yersinia pestis KIM D27]
 gi|294502151|ref|YP_003566213.1| ribonuclease PH [Yersinia pestis Z176003]
 gi|21759404|sp|Q8ZJP8|RNPH_YERPE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61215882|sp|Q66GE1|RNPH_YERPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|122382629|sp|Q1C262|RNPH_YERPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|122384026|sp|Q1CCZ7|RNPH_YERPN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228325|sp|A4TSE2|RNPH_YERPP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166991087|sp|A7FCS9|RNPH_YERP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736955|sp|B2JYM8|RNPH_YERPB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736956|sp|A9R668|RNPH_YERPG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736957|sp|B1JQX8|RNPH_YERPY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|21956760|gb|AAM83691.1|AE013610_3 RNase PH [Yersinia pestis KIM 10]
 gi|45434765|gb|AAS60326.1| ribonuclease PH [Yersinia pestis biovar Microtus str. 91001]
 gi|51587681|emb|CAH19281.1| ribonuclease PH [Yersinia pseudotuberculosis IP 32953]
 gi|108777614|gb|ABG20133.1| RNAse PH [Yersinia pestis Nepal516]
 gi|108781402|gb|ABG15460.1| RNAse PH [Yersinia pestis Antiqua]
 gi|115345876|emb|CAL18734.1| ribonuclease PH [Yersinia pestis CO92]
 gi|145212797|gb|ABP42204.1| RNAse PH [Yersinia pestis Pestoides F]
 gi|149290300|gb|EDM40377.1| ribonuclease PH [Yersinia pestis CA88-4125]
 gi|152958394|gb|ABS45855.1| ribonuclease PH [Yersinia pseudotuberculosis IP 31758]
 gi|162354407|gb|ABX88355.1| ribonuclease PH [Yersinia pestis Angola]
 gi|165915890|gb|EDR34498.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921935|gb|EDR39112.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989617|gb|EDR41918.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205050|gb|EDR49530.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166963306|gb|EDR59327.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048502|gb|EDR59910.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167054331|gb|EDR64148.1| ribonuclease PH [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|169752901|gb|ACA70419.1| ribonuclease PH [Yersinia pseudotuberculosis YPIII]
 gi|186696413|gb|ACC87042.1| ribonuclease PH [Yersinia pseudotuberculosis PB1/+]
 gi|229678614|gb|EEO74719.1| ribonuclease PH [Yersinia pestis Nepal516]
 gi|229690285|gb|EEO82339.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. India 195]
 gi|229696259|gb|EEO86306.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706604|gb|EEO92610.1| ribonuclease PH [Yersinia pestis Pestoides A]
 gi|262360230|gb|ACY56951.1| ribonuclease PH [Yersinia pestis D106004]
 gi|262364176|gb|ACY60733.1| ribonuclease PH [Yersinia pestis D182038]
 gi|270337000|gb|EFA47777.1| tRNA nucleotidyltransferase [Yersinia pestis KIM D27]
 gi|294352610|gb|ADE62951.1| ribonuclease PH [Yersinia pestis Z176003]
 gi|320013398|gb|ADV96969.1| ribonuclease PH [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 238

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +   S K + +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNKLV-ASGKLK-ANPMKGLVAAVSVGIVKGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +   A+L+LA+  I  + + QK  + +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLDLARGGIETIFQAQKAALES 238


>gi|318057177|ref|ZP_07975900.1| ribonuclease PH [Streptomyces sp. SA3_actG]
 gi|318078066|ref|ZP_07985398.1| ribonuclease PH [Streptomyces sp. SA3_actF]
 gi|333024799|ref|ZP_08452863.1| putative ribonuclease PH [Streptomyces sp. Tu6071]
 gi|332744651|gb|EGJ75092.1| putative ribonuclease PH [Streptomyces sp. Tu6071]
          Length = 241

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 115/237 (48%), Positives = 155/237 (65%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R +S+ R  SK+AEGS LV FGDT +L TA+  E VP W + +  GW+TA
Sbjct: 3   RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+VVD  ALG   +++DCDV+QA
Sbjct: 63  EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDTRALGENTVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D ++  +           L+  V+A+S G++   P +DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGIVDSVPYLDLRYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   + D N V T  G  VEVQG+AE A F +    A+L+LA    ADL  LQ++ +
Sbjct: 183 DVRAETDMNVVRTGDGRFVEVQGTAEAAPFDRAELDALLDLASAGCADLAALQREAL 239


>gi|84494376|ref|ZP_00993495.1| ribonuclease PH [Janibacter sp. HTCC2649]
 gi|84383869|gb|EAP99749.1| ribonuclease PH [Janibacter sp. HTCC2649]
          Length = 254

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 117/236 (49%), Positives = 153/236 (64%), Gaps = 2/236 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR    +REI +TR    +AEGS L++FG T +L  A+  E VP W++    GW+T+
Sbjct: 7   RHDGRAPEDLREIRITRNWLDHAEGSVLIEFGRTRVLCAASFTEGVPRWLKGKGTGWVTS 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  RE+  G+ GGR+ EI R+IGRALR+V+D  ALG   I++DCDV+QA
Sbjct: 67  EYEMLPRSTNTRSDRESRKGKVGGRTHEISRLIGRALRAVIDTKALGENTIVVDCDVLQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D ++         + +Q L   +AA+S G++ G P++DLDY E
Sbjct: 127 DGGTRTASITGAYVALVDAIEDARAKGLIAKNAQPLLDSIAAVSVGVVGGLPVLDLDYPE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAE--RATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DST D D N VMT SG  VEVQG+AE   A F +D    +L+LA    A L   QK
Sbjct: 187 DSTADTDMNVVMTGSGRYVEVQGTAEGADAAFDRDRLNELLDLAAAGCATLTLEQK 242


>gi|261365535|ref|ZP_05978418.1| tRNA nucleotidyltransferase [Neisseria mucosa ATCC 25996]
 gi|288565953|gb|EFC87513.1| tRNA nucleotidyltransferase [Neisseria mucosa ATCC 25996]
          Length = 246

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 116/235 (49%), Positives = 167/235 (71%), Gaps = 2/235 (0%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
           + R  + +R+I +T     +A+GSCL++ G+T ++ TA+++E VP ++R    GW+TAEY
Sbjct: 7   TSRDADSLRDIKITPNFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKGQGWVTAEY 66

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           GMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADG
Sbjct: 67  GMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
           GTRTA+ITGA+VAL   +  +   S+       ++  VAA+S G++ G P++DLDY EDS
Sbjct: 127 GTRTASITGAFVALQIAVNKL--ISDDLISENPIREAVAAVSAGVVGGVPLLDLDYPEDS 184

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             D D N VMT SG I+E+QG+AE A FS D    ++ LA+  IA+L   Q++ +
Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEGAPFSLDELGKLIALAQKGIAELTAHQQNAL 239


>gi|256846413|ref|ZP_05551870.1| ribonuclease ph [Fusobacterium sp. 3_1_36A2]
 gi|256718182|gb|EEU31738.1| ribonuclease ph [Fusobacterium sp. 3_1_36A2]
          Length = 434

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 111/241 (46%), Positives = 160/241 (66%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T  GW+T
Sbjct: 2   LREDGRKFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+IGRALR+ +DL  LG R I IDCDVIQ
Sbjct: 62  AEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG ++AL   ++ + D   +      L  +VAAIS G +    +VDL Y 
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKLLD--EEILEENPLISNVAAISVGKINSELMVDLKYS 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   +VD N +M   G  +EVQG+ E +TF++     +L+LA++ I  LI+LQ  +I+ 
Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQDKIINQ 239

Query: 241 E 241
           E
Sbjct: 240 E 240


>gi|312622868|ref|YP_004024481.1| ribonuclease ph [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203335|gb|ADQ46662.1| ribonuclease PH [Caldicellulosiruptor kronotskyensis 2002]
          Length = 258

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  N++R I +TR   KYAEGSCL++ G+T ++ TAT+++KVP + + +  GWIT
Sbjct: 1   MRQDQRAYNEIRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  R+    R  GRS EIQR+IGRALR+ ++  ALG R IIIDCDVIQ
Sbjct: 61  AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG ++A+ D  + + D   K   +  +   VAA+S G+  G  ++DL + 
Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPVTDFVAAVSVGICDGVEMLDLCFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VM D G  +E+QG+AE A FS D F  +L L K  I  +I++Q++V+  
Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWDQFQKLLELGKQGIQKIIEIQREVLGE 238

Query: 241 E 241
           +
Sbjct: 239 D 239


>gi|302871436|ref|YP_003840072.1| ribonuclease PH [Caldicellulosiruptor obsidiansis OB47]
 gi|302574295|gb|ADL42086.1| ribonuclease PH [Caldicellulosiruptor obsidiansis OB47]
          Length = 258

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  N++R I +TR   KYAEGSCL++ G+T ++ TAT+++KVP + + +  GWIT
Sbjct: 1   MRQDQRAYNELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  R+    R  GRS EIQR+IGRALR+ ++  ALG R IIIDCDVIQ
Sbjct: 61  AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG ++A+ D  + + D   K   +  +   VAA+S G+  G  ++DL + 
Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPITDFVAAVSVGICDGVEMLDLCFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VM D G  +E+QG+AE A FS + F  +L L K  I  +I++QK+V+  
Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQKLLELGKQGIQKIIEVQKEVLGQ 238

Query: 241 E 241
           +
Sbjct: 239 D 239


>gi|294784524|ref|ZP_06749813.1| ribonuclease PH/Ham1 protein [Fusobacterium sp. 3_1_27]
 gi|294487740|gb|EFG35099.1| ribonuclease PH/Ham1 protein [Fusobacterium sp. 3_1_27]
          Length = 434

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 111/241 (46%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T  GWIT
Sbjct: 2   LREDGRKFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWIT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+IGRALR+ +DL  LG R I IDCDVIQ
Sbjct: 62  AEYSMLPRATNERNPREASKGKLSGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG ++AL   ++ + D   +      L  +VAAIS G +    +VDL Y 
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKLLD--EEILEENPLISNVAAISVGKINSELMVDLKYS 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   +VD N +M   G  +EVQG+ E +TF++     +L+LA++ I   I+LQ  +I+ 
Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRFIELQDKIINQ 239

Query: 241 E 241
           E
Sbjct: 240 E 240


>gi|302521564|ref|ZP_07273906.1| ribonuclease PH [Streptomyces sp. SPB78]
 gi|302430459|gb|EFL02275.1| ribonuclease PH [Streptomyces sp. SPB78]
          Length = 241

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 115/237 (48%), Positives = 155/237 (65%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R +S+ R  SK+AEGS LV FGDT +L TA+  E VP W + +  GW+TA
Sbjct: 3   RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+VVD  ALG   +++DCDV+QA
Sbjct: 63  EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDPRALGENTVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D ++  +           L+  V+A+S G++   P +DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGIVDSVPYLDLRYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   + D N V T  G  VEVQG+AE A F +    A+L+LA    ADL  LQ++ +
Sbjct: 183 DVRAETDMNVVRTGDGRFVEVQGTAEAAPFDRAELDALLDLASAGCADLAALQREAL 239


>gi|146296019|ref|YP_001179790.1| ribonuclease PH [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|166228275|sp|A4XI64|RNPH_CALS8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145409595|gb|ABP66599.1| RNAse PH [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 258

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 160/241 (66%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  N++R I +TR   KYAEGSCL++ G+T ++ TAT+++KVP + + +  GWIT
Sbjct: 1   MRQDQRSYNELRPIKITRNFIKYAEGSCLIEMGNTKVIITATIDDKVPPFKKGSGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  R+    R  GRS EIQR+IGRALR+ ++  ALG R II+DCDVIQ
Sbjct: 61  AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIILDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG ++A+ D  + + D  +K   +  +   VAA+S G+  G  ++DL + 
Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--DKVIENFPITDFVAAVSVGICDGVEMLDLCFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VM D G  +E+QG+AE   F+Q+ F  +L L K  I  +I++Q++V+  
Sbjct: 179 EDSKASVDMNLVMNDKGEFIEIQGTAEGGAFTQEQFEKLLELGKQGIQKIIEIQREVLGE 238

Query: 241 E 241
           +
Sbjct: 239 D 239


>gi|328956949|ref|YP_004374335.1| ribonuclease PH [Carnobacterium sp. 17-4]
 gi|328673273|gb|AEB29319.1| ribonuclease PH [Carnobacterium sp. 17-4]
          Length = 454

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 115/240 (47%), Positives = 159/240 (66%), Gaps = 5/240 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+ ++ R +++     K+ EGS LV FGDT ++  AT+E +VP +++    GW+ 
Sbjct: 1   MRADGRKNDENRLVTIETNYLKHPEGSVLVSFGDTKVICNATIETRVPRFLKGMGSGWVH 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+I R+LRS +DL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNIREAAKGKLSGRTMEIQRLIARSLRSSIDLEALGERSITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLC-GYPIVDLD 178
           ADGGTRTA+ITGA+VAL   +Q + D     +L++  +K +VAAIS G+L  G  ++DL+
Sbjct: 121 ADGGTRTASITGAFVALKLAIQTLLDSG---ELTESPIKENVAAISVGILKDGEAVLDLN 177

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y EDS+ +VD N VMT  G  VE+QG+ E +TFS +    ML   K  I +LI++Q D  
Sbjct: 178 YLEDSSAEVDMNLVMTSLGQFVEIQGTGEESTFSSEQLSVMLEFGKKGINELIQVQDDAF 237


>gi|163840218|ref|YP_001624623.1| ribonuclease PH [Renibacterium salmoninarum ATCC 33209]
 gi|162953694|gb|ABY23209.1| ribonuclease PH [Renibacterium salmoninarum ATCC 33209]
          Length = 250

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 115/238 (48%), Positives = 162/238 (68%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q+R+IS+TR  S  AEGS L++FG+T +L T++L E VP W+R    GW+T
Sbjct: 10  LRADGRTADQLRDISITRGWSSQAEGSALIEFGNTRVLCTSSLTEGVPRWLRGEGRGWVT 69

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LRS++D  ALG   I++DCDV+Q
Sbjct: 70  AEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQ 129

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL + ++   +       +Q L   VAA+S G++   P++DL Y 
Sbjct: 130 ADGGTRTAAITGAYVALAESIRFARENKLISATAQPLTDTVAAVSAGIIDTVPMLDLAYV 189

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           ED   + D N V+T SG  VEVQG+AE A F ++   A+L+LA    A L ++Q++ +
Sbjct: 190 EDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRNQLDALLDLALLGTAQLAQIQRETL 247


>gi|294791355|ref|ZP_06756512.1| tRNA nucleotidyltransferase [Scardovia inopinata F0304]
 gi|294457826|gb|EFG26180.1| tRNA nucleotidyltransferase [Scardovia inopinata F0304]
          Length = 259

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 111/242 (45%), Positives = 157/242 (64%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q+R +++TR  ++  EGS L++ G T +L TAT  + VP W +++  GW+T
Sbjct: 17  IRADGRAVDQLRPVTITRGWTQAPEGSVLIECGQTRVLCTATFSQGVPRWRKDSGLGWVT 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T +R  RE+V G+ GGR+ EI R+IGR LR +VDL ALG   I IDCDV+Q
Sbjct: 77  AEYAMIPRATADRTDRESVRGKIGGRTHEISRLIGRVLRGIVDLGALGENMIQIDCDVLQ 136

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D +   +         +VL   V+A+S G++ G P++DL Y 
Sbjct: 137 ADGGTRTASITGAYVALADAVSWAKKNKKIKAAKRVLLDQVSAVSVGIINGTPMLDLPYT 196

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS    D N  MT SG  +E+QG+AE   FS+D    +L+LA+     L +LQK  +  
Sbjct: 197 EDSQAMTDMNVAMTASGKFIEIQGTAEHRPFSRDELNTLLDLAQKGNTQLQELQKQALKK 256

Query: 241 EV 242
           E+
Sbjct: 257 EI 258


>gi|8102038|gb|AAF72714.1|AF263927_2 ribonuclease PH [Carnobacterium sp. St2]
          Length = 364

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 113/236 (47%), Positives = 156/236 (66%), Gaps = 5/236 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +++R +++     K+ EGS LV FGDT ++  AT+E KVP ++R    GW+ 
Sbjct: 1   MRTNTRKNDELRLVTIETNYLKHPEGSVLVSFGDTKVICNATVEPKVPPFMRGQGKGWVH 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+I R+LRSV+DL  LG R I +DCDVIQ
Sbjct: 61  AEYAMLPRATNTRTIREAAKGKLTGRTMEIQRLIARSLRSVIDLEKLGERAITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLC-GYPIVDLD 178
           ADGGTRTA+ITGA+VAL   +Q + D     QL++  +K ++AA+S G+   G  ++DLD
Sbjct: 121 ADGGTRTASITGAFVALKMAIQTLLDSG---QLTEDPVKENIAAVSVGITKQGEAVLDLD 177

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           Y EDS+  VD N  MT +G   E+QG+ E ATFS D    ML L K  + +L ++Q
Sbjct: 178 YLEDSSAAVDMNLFMTANGEFFELQGTGEEATFSNDQLMEMLELGKKGLNELFQIQ 233


>gi|18311236|ref|NP_563170.1| ribonuclease PH [Clostridium perfringens str. 13]
 gi|168205082|ref|ZP_02631087.1| ribonuclease PH [Clostridium perfringens E str. JGS1987]
 gi|168211260|ref|ZP_02636885.1| ribonuclease PH [Clostridium perfringens B str. ATCC 3626]
 gi|168216782|ref|ZP_02642407.1| ribonuclease PH [Clostridium perfringens NCTC 8239]
 gi|169347042|ref|ZP_02865984.1| ribonuclease PH [Clostridium perfringens C str. JGS1495]
 gi|182625546|ref|ZP_02953317.1| ribonuclease PH [Clostridium perfringens D str. JGS1721]
 gi|21759399|sp|Q8XI67|RNPH_CLOPE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|18145919|dbj|BAB81960.1| ribonuclease PH [Clostridium perfringens str. 13]
 gi|169296725|gb|EDS78854.1| ribonuclease PH [Clostridium perfringens C str. JGS1495]
 gi|170663269|gb|EDT15952.1| ribonuclease PH [Clostridium perfringens E str. JGS1987]
 gi|170710734|gb|EDT22916.1| ribonuclease PH [Clostridium perfringens B str. ATCC 3626]
 gi|177909234|gb|EDT71699.1| ribonuclease PH [Clostridium perfringens D str. JGS1721]
 gi|182381123|gb|EDT78602.1| ribonuclease PH [Clostridium perfringens NCTC 8239]
          Length = 248

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 114/243 (46%), Positives = 162/243 (66%), Gaps = 6/243 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR++ Q+R + +TR  +KYAEGS L++ GDT +L TA++EEKVP +++ +  GWIT
Sbjct: 1   MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASIEEKVPPFLKGSGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST +R +R+    +  GR+ EIQR+IGRALRS VD+ ALG + I IDCDV+Q
Sbjct: 61  AEYNMLPRSTQSRKQRDINKLKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQ--HMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ADGGTRT +ITG++VAL D +   H +   N +     ++  V+A+S G++    I+DL 
Sbjct: 121 ADGGTRTTSITGSFVALVDAVNKLHQKKPFNVYP----IRHFVSAVSVGIVGEEKILDLC 176

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y ED    VD N VMT+ G  +E+QG+ E   FS+     +LNLA+     +I+ QKD +
Sbjct: 177 YEEDHVAKVDMNVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQAQKDAL 236

Query: 239 SNE 241
             +
Sbjct: 237 KTD 239


>gi|225075090|ref|ZP_03718289.1| hypothetical protein NEIFLAOT_00089 [Neisseria flavescens
           NRL30031/H210]
 gi|224953574|gb|EEG34783.1| hypothetical protein NEIFLAOT_00089 [Neisseria flavescens
           NRL30031/H210]
          Length = 277

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 115/232 (49%), Positives = 167/232 (71%), Gaps = 2/232 (0%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
           +GR  + +R I +T     +A+GSCL++ G+T ++ TA+++E VP ++R  + GW+TAEY
Sbjct: 42  TGRAADSLRNIKITPNFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKEQGWVTAEY 101

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           GMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADG
Sbjct: 102 GMLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 161

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
           GTRTA+ITGA+VAL   +  +   S+       ++  VAA+S G++ G P++DLDY EDS
Sbjct: 162 GTRTASITGAYVALQIAVDKL--LSDGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDS 219

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
             D D N +MT SG I+E+QG+AE A FS +    ++ LA   IA+L++ Q+
Sbjct: 220 GCDSDVNIIMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQQ 271


>gi|123440458|ref|YP_001004452.1| ribonuclease PH [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|166228324|sp|A1JHW7|RNPH_YERE8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|122087419|emb|CAL10200.1| ribonuclease PH [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 238

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 120/238 (50%), Positives = 162/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +   S K + +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNKLV-ASGKLK-ANPMKGLVAAVSVGIVKGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VM + G ++EVQG+AE   FS +    +L LA+  I  + + QK  +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARGGIETIFQAQKAAL 236


>gi|315606171|ref|ZP_07881199.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312129|gb|EFU60218.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 255

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 112/235 (47%), Positives = 155/235 (65%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q+R +SLTR  S   EGS LV+FG+T +L  A+  E VP W R++  GW+T
Sbjct: 6   LRADGRTPSQLRPVSLTRGWSGTGEGSVLVEFGNTRVLCVASFTEGVPRWKRDSGEGWVT 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+QEI R+IGR+LR +VD+SALG   I++DCDV++
Sbjct: 66  AEYSMLPRATEQRSSRESVKGKVGGRTQEISRLIGRSLRGIVDVSALGENTIVLDCDVLR 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA+VAL D +   ++       ++VL   V+A+S G++ G  + DL Y 
Sbjct: 126 ADGGTRTASVTGAYVALADAIAWAKERGILTPSARVLTDSVSAVSVGIIDGTAMADLPYV 185

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           ED     D N V T  G  +EVQG+AE A FS++    +L+LA    A L + QK
Sbjct: 186 EDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFSREELSELLDLATAGNAQLARAQK 240


>gi|222528843|ref|YP_002572725.1| ribonuclease PH [Caldicellulosiruptor bescii DSM 6725]
 gi|254808576|sp|B9MQJ8|RNPH_ANATD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|222455690|gb|ACM59952.1| ribonuclease PH [Caldicellulosiruptor bescii DSM 6725]
          Length = 258

 Score =  225 bits (574), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  N++R I +TR   KYAEGSCL++ G+T ++ TAT+++KVP + + +  GWIT
Sbjct: 1   MRQDQRAYNEIRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  R+    R  GRS EIQR+IGRALR+ ++  ALG R IIIDCDVIQ
Sbjct: 61  AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG ++A+ D  + + D   K   +  +   VAA+S G+  G  ++DL + 
Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPVTDFVAAVSVGICDGVEMLDLCFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VM D G  +E+QG+AE A FS + F  +L L K  I  +I++QK+V+  
Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQKLLELGKQGIQKIIEVQKEVLGQ 238

Query: 241 E 241
           +
Sbjct: 239 D 239


>gi|312794043|ref|YP_004026966.1| ribonuclease ph [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181183|gb|ADQ41353.1| ribonuclease PH [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 258

 Score =  225 bits (574), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  N++R I +TR   KYAEGSCL++ G+T ++ TAT+++KVP + + +  GWIT
Sbjct: 1   MRQDQRAYNELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  R+    R  GRS EIQR+IGRALR+ ++  ALG R IIIDCDVIQ
Sbjct: 61  AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG ++A+ D  + + D   K   +  +   VAA+S G+  G  ++DL + 
Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPITDFVAAVSVGICDGVEMLDLCFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VM D G  +E+QG+AE A FS + F  +L L K  I  +I++QK+V+  
Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQRLLELGKQGIQKIIEVQKEVLGE 238

Query: 241 E 241
           +
Sbjct: 239 D 239


>gi|307329928|ref|ZP_07609081.1| ribonuclease PH [Streptomyces violaceusniger Tu 4113]
 gi|306884419|gb|EFN15452.1| ribonuclease PH [Streptomyces violaceusniger Tu 4113]
          Length = 243

 Score =  225 bits (574), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 114/241 (47%), Positives = 157/241 (65%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R +++ R  SK+AEGS LV FGDT +L TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPDQLRPVTIERGWSKHAEGSVLVSFGDTRVLCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  RE+V G+ GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYAMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +             Q L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAIGWARGKKLIKATRQPLTGTVSAVSVGIVGGIPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D   + D N V T  G  VEVQG+AE   F+++    +L+LA      L  +Q+  ++ E
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGEPFAREELNGLLDLAVAGCETLAGIQRAALALE 242

Query: 242 V 242
           +
Sbjct: 243 M 243


>gi|237736793|ref|ZP_04567274.1| ribonuclease PH [Fusobacterium mortiferum ATCC 9817]
 gi|229420655|gb|EEO35702.1| ribonuclease PH [Fusobacterium mortiferum ATCC 9817]
          Length = 255

 Score =  225 bits (574), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 108/238 (45%), Positives = 160/238 (67%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +++R +  T+  + YAEGS L++ G+T ++ TAT+ +KVP +++N   GW+T
Sbjct: 18  LREDGRDVDELRVLKATKDFNLYAEGSVLMECGNTKVICTATVSDKVPPFLKNQGKGWLT 77

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+TG R +RE+  G+  GR+ EIQR+IGRALR+ VDL  LG R I IDCDVIQ
Sbjct: 78  AEYSMIPRATGERNQRESAKGKLTGRTMEIQRLIGRALRTAVDLEKLGERTITIDCDVIQ 137

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG ++AL   ++ +   +        +  +VAAIS G++ G P++DL Y 
Sbjct: 138 ADGGTRTTSITGGYIALALAMKKL--VAEGVLAENPIISNVAAISVGIVNGTPVLDLKYT 195

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  +VD N VM   G  VEVQG+ E AT+++     ML+LA+  + ++++LQ  +I
Sbjct: 196 EDSAAEVDMNVVMNGEGKFVEVQGTGEEATYTRKELNEMLDLAEKGLKEIMELQNRII 253


>gi|114566005|ref|YP_753159.1| tRNA nucleotidyltransferase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|122318883|sp|Q0AZR6|RNPH_SYNWW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|114336940|gb|ABI67788.1| RNAse PH [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 239

 Score =  225 bits (574), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 113/237 (47%), Positives = 158/237 (66%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R  +QMR + +     KY +GS L++ GDT ++ +A +EEKVP ++R    GW+TA
Sbjct: 3   RPQNRGNDQMRTVRIIPGFQKYPDGSVLIEAGDTRVMCSAMMEEKVPPFLRGKGSGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP ST  R +REA  G+  GR+ EIQR+IGR+LR+VVD+ A+G R + IDCDV+QA
Sbjct: 63  EYSLLPSSTETRTQREASKGKISGRTSEIQRLIGRSLRAVVDMPAMGERTLWIDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITG++VAL+   +  ++      +   +K  VAAIS G++ G PI+DL+Y E
Sbjct: 123 DGGTRTAAITGSFVALYLAFKKFKEQGIIETIP--VKDFVAAISVGIIDGTPILDLEYIE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  DVD N VMT +G  +E+QG+AE   FS+     +L LA   I +LI LQK ++
Sbjct: 181 DSQADVDMNVVMTGNGDFIEIQGTAEGTVFSRAELDQLLELAGKGIQELIALQKTIL 237


>gi|257126136|ref|YP_003164250.1| ribonuclease PH [Leptotrichia buccalis C-1013-b]
 gi|257050075|gb|ACV39259.1| ribonuclease PH [Leptotrichia buccalis C-1013-b]
          Length = 231

 Score =  225 bits (574), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 114/233 (48%), Positives = 159/233 (68%), Gaps = 2/233 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ ++MRE+ +T+    + EGS L++FG+T ++  AT+EEK+P W+R T  GWIT
Sbjct: 1   MRNNNRKNDEMREVKVTKNYIIHPEGSVLIEFGNTKVICNATVEEKIPRWLRGTGSGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  RV+RE+  G+  GR+ EIQR+IGRALR+ +DL  LG R I+IDCDVIQ
Sbjct: 61  AEYSMLPRATNTRVQRESTKGKLSGRTMEIQRLIGRALRATIDLEKLGERTIMIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA++AL   ++ + D     ++   +K  VAAIS G +    ++DL+Y 
Sbjct: 121 ADGGTRTASITGAYLALELAIEKLIDERKLKEMP--IKAKVAAISVGKVRNELLLDLEYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           EDS  DVD N VM D G  +E+QG+ E ATF+Q      + L+K+    L KL
Sbjct: 179 EDSRADVDMNIVMNDKGEFIELQGTGEEATFTQTELLKFIELSKNAFDKLFKL 231


>gi|15677352|ref|NP_274507.1| ribonuclease PH [Neisseria meningitidis MC58]
 gi|21759417|sp|Q9JYN5|RNPH_NEIMB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|7226741|gb|AAF41855.1| ribonuclease PH [Neisseria meningitidis MC58]
 gi|316986046|gb|EFV64983.1| ribonuclease PH [Neisseria meningitidis H44/76]
 gi|325140644|gb|EGC63162.1| ribonuclease PH [Neisseria meningitidis CU385]
 gi|325199896|gb|ADY95351.1| ribonuclease PH [Neisseria meningitidis H44/76]
          Length = 242

 Score =  225 bits (573), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 117/239 (48%), Positives = 170/239 (71%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+S R  + +R+I +T     + +GSCL++ G+T ++ TA+++E VP ++R    GW+T
Sbjct: 5   IRIS-RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVT 63

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST +R+ REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQ
Sbjct: 64  AEYGMLPASTASRMLREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL   +  +   S+       ++  VAA+S G++ G P++DLDY 
Sbjct: 124 ADGGTRTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSVGVVNGVPLLDLDYP 181

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT SG I+E+QG+AE A FS D    ++ LA+  I +L++ Q++ +S
Sbjct: 182 EDSGCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALS 240


>gi|239982007|ref|ZP_04704531.1| ribonuclease PH [Streptomyces albus J1074]
 gi|291453857|ref|ZP_06593247.1| ribonuclease PH [Streptomyces albus J1074]
 gi|291356806|gb|EFE83708.1| ribonuclease PH [Streptomyces albus J1074]
          Length = 241

 Score =  225 bits (573), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 115/233 (49%), Positives = 151/233 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS LV FGDT +L TA+  E VP W + +  GW+TA
Sbjct: 3   RIDGRTPAQLRPLTIERSWSKHAEGSVLVAFGDTKVLCTASFTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L G VAA+S G++   P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAISWAQGKKIIKPGRKPLTGSVAAVSVGIVGSTPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D   + D N V T  G  VEVQG+AE A F +    A+L+L     ADL K Q
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRTELDALLDLGATGCADLTKGQ 235


>gi|325290671|ref|YP_004266852.1| RNAse PH [Syntrophobotulus glycolicus DSM 8271]
 gi|324966072|gb|ADY56851.1| RNAse PH [Syntrophobotulus glycolicus DSM 8271]
          Length = 246

 Score =  225 bits (573), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 111/237 (46%), Positives = 161/237 (67%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R++ R   ++R + +TRR ++  EGS L++ G T +L TA++E++VP +++    GWITA
Sbjct: 3   RIAERNNQELRPVRITRRYTEIPEGSVLIEIGKTMVLCTASIEDRVPPFLKGAGKGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+TG R +RE+  G+  GR+ EIQR+IGRALRSVVDLS LG + I +DCDV+QA
Sbjct: 63  EYSMLPRATGVRNQRESSKGKLSGRTMEIQRLIGRALRSVVDLSKLGEKTIWLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VALHD +  +         +  +   +AA+S G + G  ++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALHDAVSFL--LGAGLLKTNPITDSLAAVSVGKVRGEYLLDLAYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  +VD N VMT SG ++EVQG+AE+  F +     +L+LA++ I  L+  Q+  +
Sbjct: 181 DSKAEVDMNVVMTGSGKLIEVQGTAEKEPFDRKELDELLDLAENGIRTLMGYQRQAL 237


>gi|168213163|ref|ZP_02638788.1| ribonuclease PH [Clostridium perfringens CPE str. F4969]
 gi|170715201|gb|EDT27383.1| ribonuclease PH [Clostridium perfringens CPE str. F4969]
          Length = 248

 Score =  225 bits (573), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 114/243 (46%), Positives = 162/243 (66%), Gaps = 6/243 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR++ Q+R + +TR  +KYAEGS L++ GDT +L TA++EEKVP +++ +  GWIT
Sbjct: 1   MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASIEEKVPPFLKGSGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST +R +R+    +  GR+ EIQR+IGRALRS VD+ ALG + I IDCDV+Q
Sbjct: 61  AEYNMLPRSTQSRKQRDINKLKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQ--HMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ADGGTRT +ITG++VAL D +   H +   N +     ++  V+A+S G++    I+DL 
Sbjct: 121 ADGGTRTTSITGSFVALVDAVNKLHQKKPFNVYP----IRHFVSAVSVGIVGEEKILDLC 176

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y ED    VD N VMT+ G  +E+QG+ E   FS+     +LNLA+     +I+ QKD +
Sbjct: 177 YEEDHIAKVDMNVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQAQKDAL 236

Query: 239 SNE 241
             +
Sbjct: 237 KTD 239


>gi|153956061|ref|YP_001396826.1| ribonuclease PH [Clostridium kluyveri DSM 555]
 gi|219856397|ref|YP_002473519.1| hypothetical protein CKR_3054 [Clostridium kluyveri NBRC 12016]
 gi|189043757|sp|A5N2V9|RNPH_CLOK5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808584|sp|B9DWL2|RNPH_CLOK1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|146348919|gb|EDK35455.1| RpH [Clostridium kluyveri DSM 555]
 gi|219570121|dbj|BAH08105.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 248

 Score =  225 bits (573), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 115/236 (48%), Positives = 162/236 (68%), Gaps = 2/236 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ NQ+R + +TR  +KYAEGS L++ GDT ++ TA++E+KVP +++    GWIT
Sbjct: 1   MRVDGRKCNQIRPVKITRNYTKYAEGSVLIENGDTKVICTASIEDKVPPFLKGRGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            EY M+PR+T  R  R+   GR  GR+ EIQR+IGRALRSVVDL A+G + I +DCDVIQ
Sbjct: 61  CEYNMIPRATQVRKARDINRGRIDGRTMEIQRIIGRALRSVVDLRAIGEKTIWVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA+VAL D +  +    N F +  + +  V+A+S G++    ++DL Y 
Sbjct: 121 ADGGTRTASISGAFVALVDAVNKLHK-QNPFTIYPI-RDFVSAVSVGIVNDTRMLDLCYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           EDS   VD N VMTDSG  VE+QG+ E+  F+++    +L LA+  I  +I  QKD
Sbjct: 179 EDSRAKVDMNVVMTDSGEFVEIQGTGEQNPFTREDLKELLALAEKGIKSMISAQKD 234


>gi|323705986|ref|ZP_08117556.1| ribonuclease PH [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534600|gb|EGB24381.1| ribonuclease PH [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 259

 Score =  225 bits (573), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 114/240 (47%), Positives = 169/240 (70%), Gaps = 4/240 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I +TR  ++YAEGS L++ G+T ++ TA++E+KVP + + T  GWIT+
Sbjct: 3   RVDGRDSRSLRPIKITRNFNRYAEGSVLIEVGNTKVICTASIEDKVPPFQKGTGKGWITS 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY M+PR+T  R +RE+  G+Q GR+ EIQR+IGRALR+VVDL ALG + I IDCDVIQA
Sbjct: 63  EYSMIPRATETRTQRESTKGKQSGRTMEIQRLIGRALRAVVDLDALGEKTIWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTA+ITG++VAL D +  +++   K  +S++ +K  VAA+S G++    ++DL Y 
Sbjct: 123 DGGTRTASITGSFVALVDAMNKLKE---KGAISKLPIKSFVAAVSVGIVGNEKLLDLCYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VMTD G  +E+QG+ E   FS+  F  +L LA++ +  +I++QK+ + +
Sbjct: 180 EDSNAHVDMNIVMTDKGEFIEIQGTGEGGPFSKSDFSELLELAEEGLNKIIQVQKESLGD 239


>gi|269836459|ref|YP_003318687.1| ribonuclease PH [Sphaerobacter thermophilus DSM 20745]
 gi|269785722|gb|ACZ37865.1| ribonuclease PH [Sphaerobacter thermophilus DSM 20745]
          Length = 246

 Score =  225 bits (573), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 118/240 (49%), Positives = 161/240 (67%), Gaps = 6/240 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R +++    + YAEGS L+  G+TH+L TAT+EE+VP ++     GW+TA
Sbjct: 9   RPGGRANDELRPVTIQPGFAPYAEGSALITMGNTHVLCTATIEERVPPFLVGKGQGWVTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRS+  R+ RE      GGR+QEIQR+IGR+LR+V  L  LG R I+IDCDV++A
Sbjct: 69  EYGMLPRSSPQRIPRE--RSLTGGRTQEIQRLIGRSLRAVTKLDLLGERTILIDCDVLRA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTAAITG +VAL   L+ +       QL  V L G+VAA+S G++     +DL+Y 
Sbjct: 127 DGGTRTAAITGGYVALRLALERL---VRTGQLKAVPLTGYVAAVSVGVVWDEVRLDLEYE 183

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  +VD N VMTD G IVEVQG+AE   F +    AML+LA+  +  L++ QK  +S+
Sbjct: 184 EDSQAEVDCNVVMTDRGDIVEVQGTAEGKPFPRARLDAMLDLAERGVRQLVEYQKAALSS 243


>gi|332159681|ref|YP_004296258.1| ribonuclease PH [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|318603777|emb|CBY25275.1| ribonuclease PH [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325663911|gb|ADZ40555.1| ribonuclease PH [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 238

 Score =  224 bits (572), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 114/212 (53%), Positives = 150/212 (70%), Gaps = 2/212 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +   S K + +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNKLV-ASGKLK-ANPMKGLVAAVSVGIVKGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFS 212
           EDS  + D N VM + G ++EVQG+AE   FS
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFS 210


>gi|170782454|ref|YP_001710787.1| ribonuclease PH [Clavibacter michiganensis subsp. sepedonicus]
 gi|169157023|emb|CAQ02196.1| ribonuclease PH [Clavibacter michiganensis subsp. sepedonicus]
          Length = 245

 Score =  224 bits (572), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 112/212 (52%), Positives = 146/212 (68%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+REI++ R  S+ AEGS L+ FG T +L TA+   +VP W   +  GW+TA
Sbjct: 7   RHDGRTADQLREITIERDWSEQAEGSALISFGRTRVLCTASFTNRVPRWKAGSGQGWVTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R+ REAV G+ GGR+ EI R+IGR+LR+VVD+ ALG   ++IDCDV+QA
Sbjct: 67  EYAMLPRATNERMDREAVKGKVGGRTHEISRLIGRSLRAVVDMKALGENTVVIDCDVLQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D L+   +     Q +  LK  VAA+S G++ G P++DL Y E
Sbjct: 127 DGGTRTAAITGAYVALADALEWGRERKFIAQRATPLKDSVAAVSVGIVDGKPLLDLAYVE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
           D   + D N VMT SG  VEVQG+AE A F +
Sbjct: 187 DVRAETDMNVVMTGSGSFVEVQGTAEGAPFDR 218


>gi|332308581|ref|YP_004436432.1| ribonuclease PH [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175910|gb|AEE25164.1| ribonuclease PH [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 237

 Score =  224 bits (572), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 116/239 (48%), Positives = 158/239 (66%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q+R +++TR  + +AEGS L++FG+T +L  A++ E VP +++    GW+T
Sbjct: 1   MRPNDRTASQIRPVTITRNFTCHAEGSVLIEFGNTKVLCNASVTEGVPRFMKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+QGGR+ EIQR+I R+LR+ +DL  LG   I++DCDVIQ
Sbjct: 61  AEYSMLPRATHTRSDREAARGKQGGRTLEIQRLIARSLRAALDLKLLGENTIVVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  M   S     +  +K  +AAIS G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALTWMR--SKGIIKTNPMKHMIAAISVGIYKGNAIADLEYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMTD+G ++EVQG+AE   FS +    ML LAK  I +L   QK  ++
Sbjct: 179 EDSDAETDMNVVMTDTGKMIEVQGTAEGEPFSIEEMHEMLELAKHGIRELFDEQKAALN 237


>gi|295836838|ref|ZP_06823771.1| tRNA nucleotidyltransferase [Streptomyces sp. SPB74]
 gi|197697479|gb|EDY44412.1| tRNA nucleotidyltransferase [Streptomyces sp. SPB74]
          Length = 241

 Score =  224 bits (572), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 114/237 (48%), Positives = 154/237 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R +S+ R  SK+AEGS LV FGDT +L TA+  E VP W + +  GW+TA
Sbjct: 3   RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+VVD  ALG   +++DCDV+QA
Sbjct: 63  EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDTRALGENTVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D ++  +           L+  V+A+S G++   P +DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGIIDSVPYLDLRYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   + D N V T  G  VEVQG+AE A F +    A+L+LA     DL  LQ++ +
Sbjct: 183 DVRAETDMNVVRTGDGRFVEVQGTAEAAPFDRAELDALLDLASAGCTDLAALQREAL 239


>gi|297625967|ref|YP_003687730.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921732|emb|CBL56290.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 253

 Score =  224 bits (572), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 115/238 (48%), Positives = 160/238 (67%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R +S+TR    +AEGSCL++ G T +L  A++ E VP W R +  GW+T+
Sbjct: 10  RSDGRSLDQLRPVSITRHWLDHAEGSCLIEAGRTRVLVAASVTEGVPRWRRGSGLGWVTS 69

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+  GR+ EI R+IGR+LR+V+D  ALG   I++D DV+QA
Sbjct: 70  EYEMLPRATNTRNDRESRRGKISGRTHEISRLIGRSLRAVIDYKALGENTIVVDADVLQA 129

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VALHD ++ + +  +     + L G V+AIS G++ G P++DL Y E
Sbjct: 130 DGGTRTASITGAYVALHDAVEWLRERGS--LAGEPLTGSVSAISVGIVKGVPMLDLAYDE 187

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DST DVD N V T +G  VEVQG+AE ATF +     +L+LA     +L  LQ+ VI+
Sbjct: 188 DSTADVDMNIVATGTGDFVEVQGTAEGATFDRKLLGRLLDLADKGNRELTDLQQRVIA 245


>gi|238789552|ref|ZP_04633336.1| Ribonuclease PH [Yersinia frederiksenii ATCC 33641]
 gi|238722305|gb|EEQ13961.1| Ribonuclease PH [Yersinia frederiksenii ATCC 33641]
          Length = 238

 Score =  224 bits (571), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 120/238 (50%), Positives = 164/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +   S K + +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNKLV-ASGKLK-ANPMKGLVAAVSVGIVKGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VM + G ++EVQG+AE   FS +   A+L+LA+  I  + + QK  +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLDLARGGIETIFQAQKAAL 236


>gi|312128053|ref|YP_003992927.1| ribonuclease ph [Caldicellulosiruptor hydrothermalis 108]
 gi|311778072|gb|ADQ07558.1| ribonuclease PH [Caldicellulosiruptor hydrothermalis 108]
          Length = 258

 Score =  224 bits (571), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +++R I +TR   KYAEGSCL++ G+T ++ TAT+++KVP + + +  GWIT
Sbjct: 1   MRQDQRAYDELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  R+    R  GRS EIQR+IGRALR+ ++  ALG R IIIDCDVIQ
Sbjct: 61  AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG ++A+ D  + + D   K   +  +   VAA+S G+  G  ++DL + 
Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPITDFVAAVSVGICDGVEMLDLCFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VM D G  +E+QG+AE A FS D F  +L L K  I  +I++QK+V+  
Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWDQFQKLLELGKRGIQRIIEVQKEVLGE 238

Query: 241 E 241
           +
Sbjct: 239 D 239


>gi|282858123|ref|ZP_06267318.1| tRNA nucleotidyltransferase [Pyramidobacter piscolens W5455]
 gi|282584045|gb|EFB89418.1| tRNA nucleotidyltransferase [Pyramidobacter piscolens W5455]
          Length = 251

 Score =  224 bits (571), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 117/236 (49%), Positives = 160/236 (67%), Gaps = 2/236 (0%)

Query: 3   LSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE 62
           L+  + + +R +++ R  + YAEGSC++  G T +L TAT+E+KVP ++R    GW+TAE
Sbjct: 9   LTRERADALRPVTMERNWNVYAEGSCVISCGRTRVLCTATVEDKVPPFLRGQGKGWVTAE 68

Query: 63  YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
           Y +LPRST  RV R++  GR  GRSQEIQR+IGR+LR+ VDL ALG R + +DCDVIQAD
Sbjct: 69  YSLLPRSTMTRVPRDSTKGRINGRSQEIQRLIGRSLRAAVDLDALGERCVTLDCDVIQAD 128

Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
           GGTRTA+ITGA+VAL D L+ +       +L   LK  VAA+S G + G  ++DL Y ED
Sbjct: 129 GGTRTASITGAYVALVDALRWLRGQGAFEKLP--LKSPVAAVSVGKVRGQLLLDLCYEED 186

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           ST +VD N VM   G  +EVQG+ E   FS++    ML+LA   I +L+ LQ+ V+
Sbjct: 187 STAEVDFNVVMNGQGDFIEVQGTGEGGVFSREEMAGMLDLASAGIHELMALQRHVL 242


>gi|325963801|ref|YP_004241707.1| RNAse PH [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469888|gb|ADX73573.1| RNAse PH [Arthrobacter phenanthrenivorans Sphe3]
          Length = 252

 Score =  224 bits (570), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 113/240 (47%), Positives = 161/240 (67%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q+R IS+TR  S  AEGS L++FG+T +L TA+L   VP W++    GW+T
Sbjct: 11  VRADGRAPDQLRPISITRGWSNQAEGSALIEFGNTRVLCTASLTAGVPRWLKGEGRGWVT 70

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LRS++D  ALG   I++DCDV+Q
Sbjct: 71  AEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D ++   D     + +Q +   +AA+S G++ G P++DL Y 
Sbjct: 131 ADGGTRTAAITGAYVALADSIRFARDNQLIGKNAQPIIDTIAAVSVGIIDGVPMLDLPYV 190

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   + D N V+T SG  VEVQG+AE A F +     +L+LA    + L  +Q++ +++
Sbjct: 191 EDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRAELDQLLDLALLGTSQLAAIQRETLAD 250


>gi|331695372|ref|YP_004331611.1| Ribonuclease PH [Pseudonocardia dioxanivorans CB1190]
 gi|326950061|gb|AEA23758.1| Ribonuclease PH [Pseudonocardia dioxanivorans CB1190]
          Length = 251

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 115/238 (48%), Positives = 158/238 (66%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR   K+  GS LV+FGDT +L  A++ + VP W + +  GW+TA
Sbjct: 3   RADGRADDELRPVRITRGFQKHPAGSVLVEFGDTKVLCAASVTDGVPRWRKGSGLGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V GR GGR+ EI R+IGR+LR+ +DL ALG   I +DCDVIQA
Sbjct: 63  EYAMLPSATNTRSDRESVRGRIGGRTHEISRLIGRSLRACIDLKALGENTIALDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +    N+    + +   VAA+S G++ G   +DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVTWLA-AHNRLADPKPISCQVAAVSVGVVDGRVRLDLPYEE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G ++EVQG+AE ATFS+    AML+ A   IA L  LQ + ++
Sbjct: 182 DSRAEVDTNVVATDTGTLIEVQGTAEGATFSRRTLDAMLDSALAGIATLATLQAEALA 239


>gi|269793131|ref|YP_003318035.1| ribonuclease PH [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100766|gb|ACZ19753.1| ribonuclease PH [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 248

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 117/237 (49%), Positives = 159/237 (67%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R + + R  ++YAEGS L+++G+TH+L TA++EEKVP ++R +  GW++A
Sbjct: 3   RIDGRSSGDLRPVRIERGCNRYAEGSALIRWGNTHVLCTASVEEKVPQFLRGSGRGWVSA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R +RE   G+   R QEIQR+IGR+LR+ VDLS LG R I IDCDV+QA
Sbjct: 63  EYAMLPRSTHQRTQREISRGKPNARGQEIQRLIGRSLRASVDLSLLGERTIWIDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAIT ++VAL D  + +   SN    S  +   VAA+S G++ G  ++DL Y E
Sbjct: 123 DGGTRTAAITASFVALVDACRWL--MSNGLVGSMPVVHQVAAVSAGIVAGEVMLDLCYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS+  VD N VM + G  VE+QG+ E A FS + F  ML+LA   I  L  LQ +V+
Sbjct: 181 DSSAQVDCNVVMAEDGRFVEIQGTGEDALFSMESFRDMLSLADVGIRRLHALQLEVL 237


>gi|257875805|ref|ZP_05655458.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC20]
 gi|257809971|gb|EEV38791.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC20]
          Length = 210

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 109/212 (51%), Positives = 149/212 (70%), Gaps = 3/212 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+E  +R + +   V K+ EGS ++ FGDT ++ +AT+EE+VP ++R+T  GW+T
Sbjct: 1   MRHDGRKETMLRPVKIQTNVYKHPEGSVVISFGDTTVICSATIEERVPPFLRDTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+I R+LR+VVDL  LG R I++DCDV+Q
Sbjct: 61  AEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDCDVVQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   +  +    +K      +K H+AAIS G+L  G  + DLDY
Sbjct: 121 ADGGTRTASITGAFVALRLAIDTL--LRDKALTEDPIKEHLAAISVGILPDGTCVTDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
            EDS+  VD N VMT+SG  VE+QG+ E ATF
Sbjct: 179 QEDSSAAVDMNLVMTESGRFVELQGTGEEATF 210


>gi|23099561|ref|NP_693027.1| ribonuclease PH [Oceanobacillus iheyensis HTE831]
 gi|61216060|sp|Q8EPJ5|RNPH_OCEIH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|22777791|dbj|BAC14062.1| ribonuclease PH (tRNA nucleotidyltransferase) [Oceanobacillus
           iheyensis HTE831]
          Length = 244

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 113/243 (46%), Positives = 163/243 (67%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R+ NQ+R I++T     + EGS L++ G+T ++  A++E++VP ++R    GWIT
Sbjct: 1   MRNDQREVNQLRNINITTNYISHPEGSVLIEMGNTKVICNASIEDRVPPFMRGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALRSVVDL  +G R + IDCDVIQ
Sbjct: 61  AEYAMLPRATAQRNIRESSKGKVSGRTMEIQRLIGRALRSVVDLDQIGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA+VA+      + +   K      ++ ++AAIS G+L  G  I+DL+Y
Sbjct: 121 ADGGTRTASITGAFVAMSLAFAKLVEA--KTLKKTPIQDYLAAISVGVLTNGTEILDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N VMT  G  VE+QG+ E ATF+ +    ML L ++ I  L+K+QK++++
Sbjct: 179 EEDSEAAVDMNIVMTGEGEFVEIQGTGEEATFTPNQLQNMLKLGEEGIQQLVKIQKELLA 238

Query: 240 NEV 242
           +++
Sbjct: 239 DKL 241


>gi|19705156|ref|NP_602651.1| ribonuclease PH [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19713093|gb|AAL93950.1| Ribonuclease PH [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 434

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 111/241 (46%), Positives = 158/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  N+ R+I +T+ V+ YAEGS L++ G+T ++ TA++ +KVP ++R T  GW+T
Sbjct: 2   LREDGRNFNEERKIKITKNVNIYAEGSVLIEVGNTKVICTASVSDKVPSFLRGTGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+IGRALR+ +DL  LG R I IDCDVIQ
Sbjct: 62  AEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG ++AL   ++ +     +      L  +VAAIS G +    +VDL Y 
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKL--LQEEILEENPLISNVAAISVGKIDSNLMVDLKYS 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  +VD N +M      +EVQG+ E +TF++     +L+LA++ I  LI+LQ  +I+ 
Sbjct: 180 EDSAAEVDMNVIMNKKDEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQDRIINQ 239

Query: 241 E 241
           E
Sbjct: 240 E 240


>gi|228923234|ref|ZP_04086524.1| Ribonuclease PH [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228836440|gb|EEM81791.1| Ribonuclease PH [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 245

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 113/241 (46%), Positives = 162/241 (67%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++    +V DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+V+ 
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEVLG 238

Query: 240 N 240
           +
Sbjct: 239 D 239


>gi|172041146|ref|YP_001800860.1| ribonuclease PH [Corynebacterium urealyticum DSM 7109]
 gi|171852450|emb|CAQ05426.1| ribonuclease PH [Corynebacterium urealyticum DSM 7109]
          Length = 257

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 112/240 (46%), Positives = 161/240 (67%), Gaps = 2/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R+I +TRR +    GS LV+FG+T ++ TA++E  VP + R++  GW+TA
Sbjct: 12  RADGRSVDQLRDIRITRRFTTNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 71

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R+ RE++ G+  GR+ EI R++GRALR+ VDL+ LG   I IDCDV+QA
Sbjct: 72  EYAMLPSATHERMPRESMRGKVKGRTHEISRLVGRALRAAVDLTELGENTIAIDCDVLQA 131

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D L ++++        + L+  VAA+S G++ G   +DL Y E
Sbjct: 132 DGGTRTAAITGAYVALADALAYLQE--QGVVPGKPLRAPVAAVSVGIIDGVACLDLPYEE 189

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  DVD N VMT +G  VE+QG+ E A F +     ML+LA+  +  LI+LQ+  ++ +
Sbjct: 190 DSRADVDMNVVMTKAGRFVEIQGTGEAAEFDRAELNTMLDLAEGGLHQLIELQERALNTD 249


>gi|119503532|ref|ZP_01625615.1| ribonuclease PH [marine gamma proteobacterium HTCC2080]
 gi|119460594|gb|EAW41686.1| ribonuclease PH [marine gamma proteobacterium HTCC2080]
          Length = 243

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 116/238 (48%), Positives = 159/238 (66%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +++R I+  R  + +AEGS LV FG T +L TA+L   VP ++R    GW+TA
Sbjct: 7   RPSGRALDELRAITFERNFTCHAEGSVLVSFGQTRVLCTASLTPGVPGFLRGKGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG+R+ REA  G+Q GR+ EIQR+IGR+LR+ +DL ALG   + +DCDVIQA
Sbjct: 67  EYGMLPRSTGSRMNREASRGKQSGRTVEIQRLIGRSLRAAIDLKALGENTLTLDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+I+GA VA+ D L  ++      Q S  LK  + A+S G+  G  ++DLDY E
Sbjct: 127 DGGTRTASISGACVAVVDALNTLQR-KQSLQ-SDPLKFLIGAVSVGVWKGQAVLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DST D D N V+ + G ++EVQG+AE A F +    +ML+LA      +I  Q++ +S
Sbjct: 185 DSTADTDMNVVVAEGGGLIEVQGTAEGAAFERAELNSMLDLAVAGGEIIISKQREALS 242


>gi|239931006|ref|ZP_04687959.1| ribonuclease PH [Streptomyces ghanaensis ATCC 14672]
 gi|291439379|ref|ZP_06578769.1| ribonuclease PH [Streptomyces ghanaensis ATCC 14672]
 gi|291342274|gb|EFE69230.1| ribonuclease PH [Streptomyces ghanaensis ATCC 14672]
          Length = 245

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 114/241 (47%), Positives = 155/241 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R I++ R  SK+AEGS LV FGDT +L TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPEQLRPITIERGWSKHAEGSVLVSFGDTKVLCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R++GR+LR+V+D  ALG   +++DCDV+QA
Sbjct: 63  EYAMLPRATHTRGDRESVKGRIGGRTHEISRLVGRSLRAVIDYKALGENTVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITG++VAL D +   +         + L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGSYVALADAISWAQGKKLIKAGRRPLTGSVSAVSVGIVGGVPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D   D D N V T  G  VEVQG+AE   F++    A+L+LA    A L   Q+  +   
Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFARAELDALLDLAVAGCARLADAQRAALGTV 242

Query: 242 V 242
           V
Sbjct: 243 V 243


>gi|238750796|ref|ZP_04612294.1| Ribonuclease PH [Yersinia rohdei ATCC 43380]
 gi|238710940|gb|EEQ03160.1| Ribonuclease PH [Yersinia rohdei ATCC 43380]
          Length = 238

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 113/212 (53%), Positives = 150/212 (70%), Gaps = 2/212 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +   S K + +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNKLV-ASGKLK-ANPMKGLVAAVSVGIVKGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFS 212
           EDS  + D N VM + G ++EVQG+AE   FS
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFS 210


>gi|238063132|ref|ZP_04607841.1| ribonuclease PH [Micromonospora sp. ATCC 39149]
 gi|237884943|gb|EEP73771.1| ribonuclease PH [Micromonospora sp. ATCC 39149]
          Length = 241

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 114/241 (47%), Positives = 161/241 (66%), Gaps = 5/241 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R ++L+R  S + EGS LV+FG T +L TA++ E VP W + +  GW+TA
Sbjct: 3   RPDGRLPDQLRPVTLSRGWSTHPEGSVLVEFGGTRVLCTASVTEGVPRWRKGSGLGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+ +DL ALG   +++DCDV+QA
Sbjct: 63  EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRASIDLKALGENSVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHM---EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           DGGTRTAA+TGA+VALHD +  +   +  + K +  +V+   VAA+S G++ G   +DL 
Sbjct: 123 DGGTRTAAVTGAYVALHDAVSWLAARKALAGKPE--KVMHRSVAAVSVGVIAGEARLDLC 180

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y ED   +VD N V T SG  VEVQG+ E   F++D   A+L+LA    A+L + Q+  +
Sbjct: 181 YEEDVAAEVDMNVVCTGSGEFVEVQGTGESGVFARDQLDALLDLAVAGCAELAEAQRKAL 240

Query: 239 S 239
           S
Sbjct: 241 S 241


>gi|302534682|ref|ZP_07287024.1| ribonuclease PH [Streptomyces sp. C]
 gi|302443577|gb|EFL15393.1| ribonuclease PH [Streptomyces sp. C]
          Length = 244

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 114/233 (48%), Positives = 151/233 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS L+ FGDT +  TA+  E VP W + +  GW+T+
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASFTEGVPRWRKGSGEGWVTS 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  RE+V G+ GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L G VAA+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAIAWGQGKKLIKAGRKPLTGTVAAVSVGIVDGVPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D   + D N V T  G  VEVQG+AE   F +    A+L+LA    ADL  LQ
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGEPFDRKELNALLDLAAGGCADLEALQ 235


>gi|328882703|emb|CCA55942.1| Ribonuclease PH [Streptomyces venezuelae ATCC 10712]
          Length = 243

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 111/237 (46%), Positives = 153/237 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS L+ FGDT +  TA++ E VP W + +  GW+T 
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTG 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L G V A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQTKKLVKAGRKPLTGTVGAVSVGIVDGVPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   D D N V T  G  VEVQG+AE   F +    A+L+LA    A+L ++Q+  +
Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLASGGCAELAEIQRKAL 239


>gi|312877642|ref|ZP_07737599.1| ribonuclease PH [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795589|gb|EFR11961.1| ribonuclease PH [Caldicellulosiruptor lactoaceticus 6A]
          Length = 258

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 114/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +++R I +TR   KYAEGSCL++ G+T ++ TAT+++KVP + + +  GWIT
Sbjct: 1   MRQDQRAYDELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  R+    R  GRS EIQR+IGRALR+ ++  ALG R IIIDCDVIQ
Sbjct: 61  AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG ++A+ D  + + D   K   +  +   VAA+S G+  G  ++DL + 
Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPITDFVAAVSVGICDGVEMLDLCFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VM D G  +E+QG+AE A FS + F  +L L K  I  +I++QK+V+  
Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQRLLELGKQGIQKIIEVQKEVLGE 238

Query: 241 E 241
           +
Sbjct: 239 D 239


>gi|219670395|ref|YP_002460830.1| ribonuclease PH [Desulfitobacterium hafniense DCB-2]
 gi|219540655|gb|ACL22394.1| ribonuclease PH [Desulfitobacterium hafniense DCB-2]
          Length = 247

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 113/234 (48%), Positives = 153/234 (65%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  ++R + LTR  +   EGS L++ G T ++ TAT+EEKVP++ + T  GW+TA
Sbjct: 3   RFDGREAFELRPVKLTRGFTNIPEGSVLIEVGQTRVICTATVEEKVPLFKKGTGSGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALRSVVDL  LG R I +DCDVIQA
Sbjct: 63  EYSMLPRATQTRNPRESSKGKLTGRTMEIQRLIGRALRSVVDLKKLGERTIWLDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D + H+   +        +   +AA+S G + G  ++DL Y E
Sbjct: 123 DGGTRTASITGAYVALVDAVNHL--LAKGLIKENPILDSLAAVSVGKVDGMALLDLAYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  +VD N VMT  G  VE+QG+AE   F ++     L LA+  I +L+ +QK
Sbjct: 181 DSKAEVDMNVVMTGQGKFVEIQGTAEDIPFGREELDQFLELAEKGIQELMGMQK 234


>gi|255657266|ref|ZP_05402675.1| ribonuclease PH [Clostridium difficile QCD-23m63]
 gi|296451893|ref|ZP_06893610.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP08]
 gi|296879712|ref|ZP_06903687.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP07]
 gi|296259275|gb|EFH06153.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP08]
 gi|296429301|gb|EFH15173.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP07]
          Length = 449

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 112/233 (48%), Positives = 157/233 (67%), Gaps = 2/233 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R   Q+R + +TR  +KYAEGS L++ G+T ++ TA++EEKVP ++RN+  GWI AEY M
Sbjct: 7   RSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINAEYSM 66

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LPR+T  R  R+A  G+  GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQADGGT
Sbjct: 67  LPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQADGGT 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTA+ITGA+VA+ + +  +       ++   +   V+AIS G++ G  ++DL Y EDS  
Sbjct: 127 RTASITGAFVAVAEAIYKLYKAKTVKEMP--ITNFVSAISVGIVNGTHMLDLCYEEDSKA 184

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            VD N +MTD    VEVQG+ E   FS+     +L L +    +LI+LQK+ +
Sbjct: 185 QVDMNIIMTDKCEFVEVQGTGEEKPFSRTDLNLLLELGEKGNKELIRLQKEAL 237


>gi|109900580|ref|YP_663835.1| ribonuclease PH [Pseudoalteromonas atlantica T6c]
 gi|123063997|sp|Q15MV7|RNPH_PSEA6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|109702861|gb|ABG42781.1| RNAse PH [Pseudoalteromonas atlantica T6c]
          Length = 237

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 115/239 (48%), Positives = 157/239 (65%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q+R +++TR  + +AEGS L++FG+T +L  A++ E VP +++    GW+ 
Sbjct: 1   MRPNDRTASQIRPVTITRNFTCHAEGSVLIEFGNTKVLCNASVTEGVPRFMKGQGKGWVN 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+QGGR+ EIQR+I R+LR+ +DL  LG   I++DCDVIQ
Sbjct: 61  AEYSMLPRATHTRSDREAARGKQGGRTLEIQRLIARSLRAALDLKLLGENTIVVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  M   S     +  +K  +AAIS G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALTWMR--SKGIIKTNPMKHMIAAISVGIYKGNAIADLEYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMTD+G ++EVQG+AE   FS +    ML LAK  I +L   QK  ++
Sbjct: 179 EDSEAETDMNVVMTDTGKMIEVQGTAEGEPFSIEEMHEMLELAKHGIRELFDEQKAALN 237


>gi|326385028|ref|ZP_08206700.1| ribonuclease PH [Gordonia neofelifaecis NRRL B-59395]
 gi|326196242|gb|EGD53444.1| ribonuclease PH [Gordonia neofelifaecis NRRL B-59395]
          Length = 252

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 113/240 (47%), Positives = 161/240 (67%), Gaps = 1/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R I  TR  + +  GS LV+FG+T ++ TA++ E VP W R +  GW+TA
Sbjct: 4   RADGRADDELRPIKFTRGFTSHPAGSVLVEFGNTRVMCTASVTEGVPSWRRGSGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R KRE+V G+ GGR+ EI R+IGR+LR+ +DL+ALG   I IDCDV+QA
Sbjct: 64  EYSMLPAATHERSKRESVRGKIGGRTHEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++     K    Q L   +AA+S G++ G   +DL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVTYL-GAGGKLADPQPLSCIIAAVSVGVVDGRVRLDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  +VD N V TD+G +VEVQG+ E ATF++     ML++A   I +++  Q++V++  
Sbjct: 183 DSRAEVDMNVVATDAGTLVEVQGTGEGATFARGTLDKMLDVACAGIENIVAAQREVLAQP 242


>gi|293605635|ref|ZP_06688015.1| tRNA nucleotidyltransferase [Achromobacter piechaudii ATCC 43553]
 gi|292816015|gb|EFF75116.1| tRNA nucleotidyltransferase [Achromobacter piechaudii ATCC 43553]
          Length = 244

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 121/235 (51%), Positives = 163/235 (69%), Gaps = 4/235 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +++R  SL R  ++YAEGS LVK GDTH+L TA++ EKVP +++    GW+TA
Sbjct: 9   RPSGRAVDELRPFSLERGFTRYAEGSVLVKAGDTHVLCTASVLEKVPPFLKGKGEGWVTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V D+ ALG R + +DCDV+QA
Sbjct: 69  EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMRALGERTLHLDCDVLQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS-QVLKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTR A+ITGAWVA  D +  +     +  L+   ++  VAA+S G++ G  ++DLDY 
Sbjct: 129 DGGTRCASITGAWVAAADAVALL---MKRGDLAVNPIRDAVAAVSVGLVQGRSVLDLDYQ 185

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  D D N +MT SG  VEVQG+ E ATF++     ML LA+  IA L++ Q+
Sbjct: 186 EDSACDADVNVIMTGSGAFVEVQGTGEGATFTRAELDTMLVLAEGGIASLVRAQR 240


>gi|313638210|gb|EFS03458.1| ribonuclease PH [Listeria seeligeri FSL S4-171]
          Length = 248

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 117/243 (48%), Positives = 162/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ N +R+I +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 1   MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA++A+   +  + D    F    V K  +AA S G+L  G  ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKL-DAEVPFTKFPV-KDFLAATSVGVLEEGGTVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N +MT SG  VE+QG+ E ATFS+     ++ L K  IA+LI++QK+ + 
Sbjct: 179 IEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGIAELIEIQKETLG 238

Query: 240 NEV 242
            EV
Sbjct: 239 EEV 241


>gi|34763588|ref|ZP_00144521.1| RIBONUCLEASE PH; NUCLEOSIDE-TRIPHOSPHATASE [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27886731|gb|EAA23871.1| RIBONUCLEASE PH; NUCLEOSIDE-TRIPHOSPHATASE [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 434

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 110/241 (45%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ ++ R+I +T+ V+ YAEGS L++ G+T ++ TA++ +KVP ++R T  GW+T
Sbjct: 2   LREDGRKFDEERKIKITKDVNIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+IGRALR+ +DL  LG R I IDCDVIQ
Sbjct: 62  AEYSMLPRATNERNPREASKGKLSGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG ++AL   ++ + D   +      L  +VAAIS G +    +VDL Y 
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKLLD--EEILEENPLISNVAAISVGKINSELMVDLKYS 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   +VD N +M   G  +EVQG+ E +TF++     +L+LA++ I   I+LQ  +I+ 
Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRFIELQDKIINQ 239

Query: 241 E 241
           E
Sbjct: 240 E 240


>gi|296129173|ref|YP_003636423.1| ribonuclease PH [Cellulomonas flavigena DSM 20109]
 gi|296020988|gb|ADG74224.1| ribonuclease PH [Cellulomonas flavigena DSM 20109]
          Length = 257

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 110/223 (49%), Positives = 150/223 (67%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+ +++R +++TRR     EGS LV+FG T +L  A+  E VP W + +  GW+T
Sbjct: 1   MRKDGRRADELRPVTITRRFLDAGEGSVLVEFGGTKVLCVASFTEGVPRWRKGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  RE+V G+ GGR+ EI R++GR+LR+VVD++ALG   I++DCDV+Q
Sbjct: 61  AEYAMLPRATNSRSDRESVRGKVGGRTHEISRLVGRSLRAVVDVAALGENTIVLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D +              VL+  VAAIS G++ G P++DL Y 
Sbjct: 121 ADGGTRTAAITGAYVALADAVAWATTKRLVKPGRTVLRDSVAAISVGVVDGVPVLDLPYE 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           ED   + D N V T +G  VEVQG+AE A F +    A+L+LA
Sbjct: 181 EDVRAETDMNVVTTGAGAFVEVQGTAEHAPFDRAELDALLDLA 223


>gi|254385745|ref|ZP_05001066.1| ribonuclease PH [Streptomyces sp. Mg1]
 gi|194344611|gb|EDX25577.1| ribonuclease PH [Streptomyces sp. Mg1]
          Length = 244

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 114/233 (48%), Positives = 151/233 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS L+ FGDT +  TA+  E VP W + +  GW+T+
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASFTEGVPRWRKGSGEGWVTS 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  RE+V G+ GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L G VAA+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWGQRKKLIKAGRKPLTGTVAAVSVGIVDGEPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D   + D N V T  G  VEVQG+AE   F +    A+L+LA    ADL  LQ
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGEPFDRKELNALLDLAAGGCADLQALQ 235


>gi|289434487|ref|YP_003464359.1| ribonuclease PH [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289170731|emb|CBH27271.1| ribonuclease PH [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 248

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 117/245 (47%), Positives = 163/245 (66%), Gaps = 7/245 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ N +R+I +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 1   MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVENKVPPFMRGEGRGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDL 177
           ADGGTRTA+ITGA++A+   +  +  E    KF +  +L    AA S G+L  G  ++DL
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDAEVPFTKFPVKDLL----AATSVGVLEEGGTVLDL 176

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +Y EDS   VD N +MT SG  VE+QG+ E ATFS+     ++ L K  IA+LI++QK+ 
Sbjct: 177 NYIEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGIAELIEIQKET 236

Query: 238 ISNEV 242
           +  EV
Sbjct: 237 LGEEV 241


>gi|255528421|ref|ZP_05395219.1| ribonuclease PH [Clostridium carboxidivorans P7]
 gi|296184854|ref|ZP_06853265.1| ribonuclease PH [Clostridium carboxidivorans P7]
 gi|255507888|gb|EET84330.1| ribonuclease PH [Clostridium carboxidivorans P7]
 gi|296050636|gb|EFG90059.1| ribonuclease PH [Clostridium carboxidivorans P7]
          Length = 249

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 112/236 (47%), Positives = 161/236 (68%), Gaps = 2/236 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ +Q+R   +TR  +KYAEGS L++ GDT ++ TA++E+KVP +++    GWIT
Sbjct: 1   MRIDGRKNDQIRHTKITRNYTKYAEGSVLIEAGDTKVICTASIEDKVPPFLKGKGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            EY M+PRST  R  R+   G+  GR+ EIQR+IGRALRSVVDL ++G + I IDCDVIQ
Sbjct: 61  CEYNMIPRSTKVRKVRDINRGKIDGRTMEIQRIIGRALRSVVDLKSIGEKTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA++AL D +  +      F +  V +  V AIS G++    ++DL Y 
Sbjct: 121 ADGGTRTASISGAFIALVDAVNKLHK-QTPFNVYPV-RDFVGAISVGIVGNVKMLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           EDS  +VD N VMTDSG  +E+QG+ E   FS+     +L+LA+  I  +I+++K+
Sbjct: 179 EDSKANVDMNVVMTDSGEFIEIQGTGEEKPFSKQDLSELLSLAEQGINHVIQIEKE 234


>gi|254303318|ref|ZP_04970676.1| tRNA nucleotidyltransferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323510|gb|EDK88760.1| tRNA nucleotidyltransferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 434

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 110/241 (45%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ ++ R+I + + V+ YAEGS L++ G+T ++ TA++ +KVP ++R T  GW+T
Sbjct: 2   LREDGRKFDEERKIKIIKNVNIYAEGSVLIEVGNTKVICTASVSDKVPSFLRGTGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+IGRALR+ +DL  LG R I IDCDVIQ
Sbjct: 62  AEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG ++AL   ++ +     +      L  +VAAIS G +    +VDL Y 
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKL--LQEEILEENPLISNVAAISVGKIDSNLMVDLKYS 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  +VD N +M   G  +EVQG+ E +TF++     +L+LA++ I  LI+LQ  +I+ 
Sbjct: 180 EDSAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQDRIINQ 239

Query: 241 E 241
           E
Sbjct: 240 E 240


>gi|326201646|ref|ZP_08191517.1| ribonuclease PH [Clostridium papyrosolvens DSM 2782]
 gi|325988246|gb|EGD49071.1| ribonuclease PH [Clostridium papyrosolvens DSM 2782]
          Length = 240

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 111/238 (46%), Positives = 159/238 (66%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR   Q+R + + R   K+AEGS L++ GDT ++ TA++EE++P + +++  GWIT
Sbjct: 2   LRHDGRSNTQLRPVRILRNYIKHAEGSVLIEVGDTKVICTASVEERIPPFKKDSGEGWIT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +R+    +  GRS EIQR+IGR+LR++VDL  LG R I +DCDVIQ
Sbjct: 62  AEYSMLPRATAVRNQRDISKLKLNGRSSEIQRLIGRSLRTIVDLKLLGERTITVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +VAL D  + +    N       + G VAA S G++ G  ++DL Y 
Sbjct: 122 ADGGTRTASITGGYVALADACRTL--VKNGLISKTPIIGIVAATSVGIVNGEELLDLCYI 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  +VD N +MTD G  +E+Q + E+++FS+     +LNLA+  I +LIK Q +VI
Sbjct: 180 EDSNAEVDMNVIMTDKGEFIELQATGEKSSFSKKQLDKLLNLAESGIHELIKAQNEVI 237


>gi|302545021|ref|ZP_07297363.1| tRNA nucleotidyltransferase [Streptomyces hygroscopicus ATCC 53653]
 gi|302462639|gb|EFL25732.1| tRNA nucleotidyltransferase [Streptomyces himastatinicus ATCC
           53653]
          Length = 241

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 111/234 (47%), Positives = 155/234 (66%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R +++ R  SK+AEGS LV FGDT +L TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPDQLRPVTIERGWSKHAEGSVLVSFGDTRVLCTASVNEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+V+D  ALG   +++DCDV+QA
Sbjct: 63  EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         Q L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAITWAQGKKLIKAGRQPLTGTVSAVSVGIVGGVPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D   + D N V T  G  VEVQG+AE   F+++   ++L+LA     +L   Q+
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGEPFAREELNSLLDLAVGGCVELAGNQR 236


>gi|89895968|ref|YP_519455.1| hypothetical protein DSY3222 [Desulfitobacterium hafniense Y51]
 gi|89335416|dbj|BAE85011.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 247

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 113/234 (48%), Positives = 153/234 (65%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  ++R + LTR  +   EGS L++ G T ++ TAT+EEKVP++ + T  GW+TA
Sbjct: 3   RFDGREAFELRPVKLTRGFTNIPEGSVLIEVGQTRVICTATVEEKVPLFKKGTGSGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALRSVVDL  LG R I +DCDVIQA
Sbjct: 63  EYSMLPRATQTRNHRESSKGKLTGRTMEIQRLIGRALRSVVDLKKLGERTIWLDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D + H+   +        +   +AA+S G + G  ++DL Y E
Sbjct: 123 DGGTRTASITGAYVALVDAVNHL--LAKGLIKENPILDSLAAVSVGKVDGMALLDLAYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  +VD N VMT  G  VE+QG+AE   F ++     L LA+  I +L+ +QK
Sbjct: 181 DSKAEVDMNVVMTGQGKFVEIQGTAEDIPFGREELDQFLELAEKGIQELMGMQK 234


>gi|329936575|ref|ZP_08286311.1| ribonuclease [Streptomyces griseoaurantiacus M045]
 gi|329304090|gb|EGG47972.1| ribonuclease [Streptomyces griseoaurantiacus M045]
          Length = 244

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 115/229 (50%), Positives = 148/229 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +SL R  SK+AEGS LV FGDT +L TA+  E VP W + +  GW+TA
Sbjct: 3   RIDGRAPEQLRPVSLARGWSKHAEGSVLVAFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L   V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVSWAQGRKLIKAGRRPLTDTVSAVSVGIVGGAPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           D   D D N V T  G  VEVQG+AE   F +    A+L+LA     DL
Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLAVAGCGDL 231


>gi|229098953|ref|ZP_04229888.1| Ribonuclease PH [Bacillus cereus Rock3-29]
 gi|228684451|gb|EEL38394.1| Ribonuclease PH [Bacillus cereus Rock3-29]
          Length = 258

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 14  MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 74  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++    +V DL+Y
Sbjct: 134 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 191

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 192 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRTQLNELLDAAEQGIFQLIDMQKEALG 251

Query: 240 N 240
           +
Sbjct: 252 D 252


>gi|29831713|ref|NP_826347.1| ribonuclease PH [Streptomyces avermitilis MA-4680]
 gi|61216038|sp|Q82D17|RNPH_STRAW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|29608829|dbj|BAC72882.1| putative ribonuclease PH [Streptomyces avermitilis MA-4680]
          Length = 244

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 113/234 (48%), Positives = 152/234 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R I++ R  SK+AEGS LV FGDT +  TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPEQLRPITIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGRKLVKAGRKPLTGTVSAVSVGIVGGVPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D   D D N V T  G  VEVQG+AE   F +    A+L+LA     +L  +Q+
Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLAVSGCDELAVIQR 236


>gi|126700927|ref|YP_001089824.1| ribonuclease PH [Clostridium difficile 630]
 gi|115252364|emb|CAJ70205.1| Bifunctional enzyme, tRNA nucleotidyltransferase ;
           Nucleoside-triphosphatase [Clostridium difficile]
          Length = 449

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 114/240 (47%), Positives = 161/240 (67%), Gaps = 5/240 (2%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R   Q+R + +TR  +KYAEGS L++ G+T ++ TA++EEKVP ++RN+  GWI AEY M
Sbjct: 7   RSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINAEYSM 66

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LPR+T  R  R+A  G+  GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQADGGT
Sbjct: 67  LPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQADGGT 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTA+ITGA+VA+ + +  +       ++   +   V+AIS G++ G  ++DL Y EDS  
Sbjct: 127 RTASITGAFVAVAEAIYKLYKAKTIKEMP--ITNFVSAISVGIVNGIHMLDLCYEEDSKA 184

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV---ISNEV 242
            VD N +MTD    VEVQG+ E   FS+     +L L +    +LI+LQ++    IS+E+
Sbjct: 185 QVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREALGEISDEI 244


>gi|300856830|ref|YP_003781814.1| ribonuclease PH [Clostridium ljungdahlii DSM 13528]
 gi|300436945|gb|ADK16712.1| ribonuclease PH [Clostridium ljungdahlii DSM 13528]
          Length = 248

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 113/236 (47%), Positives = 162/236 (68%), Gaps = 2/236 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ +Q+R I +TR  +KYAEGS L++ GDT ++ TA++E++VP +++    GWIT
Sbjct: 1   MRIDGRKYDQIRPIKITRDYTKYAEGSVLIETGDTKVICTASIEDRVPPFLKGKGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            EY MLPR+T  R  R+   G+  GR+ EIQR+IGRALRSVVDL A+G + I +DCDVIQ
Sbjct: 61  CEYNMLPRATQVRKIRDITKGKIDGRTMEIQRIIGRALRSVVDLKAMGEKTIWVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA+VAL D +  +      F +  + +  V+AIS G++    ++DL Y 
Sbjct: 121 ADGGTRTASISGAFVALVDAVNKLHK-RTPFTVYPI-RDFVSAISVGIVNNVRMLDLCYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           EDS   VD N VMTDSG  VE+QG+ E++ F++D    +L L +  I ++I  QK+
Sbjct: 179 EDSRAQVDMNIVMTDSGEFVEIQGTGEQSPFTRDDLQELLRLGEKGINNMIHAQKE 234


>gi|288817498|ref|YP_003431845.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
 gi|288786897|dbj|BAI68644.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
 gi|308751105|gb|ADO44588.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
          Length = 253

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 113/235 (48%), Positives = 159/235 (67%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+ N++R I + R   ++ EGSCL++FG+T ++ T ++++ VP +++    GWIT
Sbjct: 1   MRKDGRKPNELRPIRIVRDYLQHPEGSCLIEFGNTKVICTVSVQDGVPPFLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V GR  GR+ EIQRMIGRA+R+ +DL+ +G R   IDCDVIQ
Sbjct: 61  AEYSMLPRATITRNVRESVQGRISGRTHEIQRMIGRAMRTALDLTKIGERTFWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA+ D +  + +       S  +K  VA++S G + G  ++DL+Y 
Sbjct: 121 ADGGTRTASITGAFVAIADAVIKLYN--EGILSSTPIKDFVASVSVGTVNGQILLDLNYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDST  VD N V T SG I E+Q   E  TFS++ F  ML+LA   I+ LI+LQ+
Sbjct: 179 EDSTASVDMNVVATGSGRISEIQALGEENTFSREEFDRMLSLALAGISQLIELQR 233


>gi|255308380|ref|ZP_05352551.1| ribonuclease PH [Clostridium difficile ATCC 43255]
          Length = 449

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 114/240 (47%), Positives = 161/240 (67%), Gaps = 5/240 (2%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R   Q+R + +TR  +KYAEGS L++ G+T ++ TA++EEKVP ++RN+  GWI AEY M
Sbjct: 7   RSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINAEYSM 66

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LPR+T  R  R+A  G+  GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQADGGT
Sbjct: 67  LPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQADGGT 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTA+ITGA+VA+ + +  +       ++   +   V+AIS G++ G  ++DL Y EDS  
Sbjct: 127 RTASITGAFVAVAEAIYKLYKAKTIKEMP--ITNFVSAISVGIVNGIHMLDLCYEEDSKA 184

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV---ISNEV 242
            VD N +MTD    VEVQG+ E   FS+     +L L +    +LI+LQ++    IS+E+
Sbjct: 185 QVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREALGEISDEI 244


>gi|295706788|ref|YP_003599863.1| ribonuclease PH [Bacillus megaterium DSM 319]
 gi|294804447|gb|ADF41513.1| ribonuclease PH [Bacillus megaterium DSM 319]
          Length = 248

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 116/241 (48%), Positives = 167/241 (69%), Gaps = 4/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MRL GR+ N++R +SL     K+ EGS L+  GDT ++ TA+++++VP ++R    GWIT
Sbjct: 1   MRLDGREFNELRSVSLHTSYLKHPEGSVLISVGDTKVICTASIDDRVPPFMRGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALRSVVDL  +G + I IDCDVIQ
Sbjct: 61  AEYSMLPRATAQRNIRESSKGKVTGRTMEIQRLIGRALRSVVDLEKVGEKTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA+VA+      + +  NK  L+++ ++ ++AA S G+     I+DL+Y
Sbjct: 121 ADGGTRTASITGAFVAMVLAFGKLVE-ENK--LTEIPIRDYLAATSVGIHGENSILDLNY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDST +VD N VMT SG  VE+QG+ E +TFS++    +L+L +  +  LI+ QK+V+ 
Sbjct: 178 EEDSTAEVDMNIVMTGSGQFVELQGTGEESTFSREQLNHLLDLGEKGVYQLIEQQKEVLD 237

Query: 240 N 240
           +
Sbjct: 238 H 238


>gi|294501440|ref|YP_003565140.1| ribonuclease PH [Bacillus megaterium QM B1551]
 gi|294351377|gb|ADE71706.1| ribonuclease PH [Bacillus megaterium QM B1551]
          Length = 248

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 116/241 (48%), Positives = 167/241 (69%), Gaps = 4/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MRL GR+ N++R +SL     K+ EGS L+  GDT ++ TA+++++VP ++R    GWIT
Sbjct: 1   MRLDGREFNELRPVSLHTSYLKHPEGSVLISVGDTKVICTASIDDRVPPFMRGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALRSVVDL  +G + I IDCDVIQ
Sbjct: 61  AEYSMLPRATAQRNIRESSKGKVTGRTMEIQRLIGRALRSVVDLEKVGEKTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA+VA+      + +  NK  L+++ ++ ++AA S G+     I+DL+Y
Sbjct: 121 ADGGTRTASITGAFVAMVLAFGKLVE-ENK--LTEIPIRDYLAATSVGIHGENSILDLNY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDST +VD N VMT SG  VE+QG+ E +TFS++    +L+L +  +  LI+ QK+V+ 
Sbjct: 178 EEDSTAEVDMNIVMTGSGQFVELQGTGEESTFSREQLNHLLDLGEKGVYQLIEQQKEVLD 237

Query: 240 N 240
           +
Sbjct: 238 H 238


>gi|254673252|emb|CBA08277.1| ribonuclease PH [Neisseria meningitidis alpha275]
          Length = 261

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 113/227 (49%), Positives = 161/227 (70%), Gaps = 2/227 (0%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
           + R  + +R+I +T     + +GSCL++ G+T ++ TA+++E VP ++R    GW+TAEY
Sbjct: 7   TSRAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVTAEY 66

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           GMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADG
Sbjct: 67  GMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
           GTRTA+ITGA+VAL   +  +   S+       ++  VAA+S G++ G P++DLDY EDS
Sbjct: 127 GTRTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDS 184

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
             D D N VMT SG I+E+QG+AE A FS D    ++ LA+  I +L
Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGEL 231


>gi|229192693|ref|ZP_04319652.1| Ribonuclease PH [Bacillus cereus ATCC 10876]
 gi|228590783|gb|EEK48643.1| Ribonuclease PH [Bacillus cereus ATCC 10876]
          Length = 258

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 14  MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 74  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++    +V DL+Y
Sbjct: 134 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 191

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 192 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 251

Query: 240 N 240
           +
Sbjct: 252 D 252


>gi|330859984|emb|CBX70312.1| ribonuclease PH [Yersinia enterocolitica W22703]
          Length = 239

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 114/213 (53%), Positives = 150/213 (70%), Gaps = 2/213 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +   S K + +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNKLV-ASGKLK-ANPMKGLVAAVSVGIVKGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
           EDS  + D N VM + G ++EVQG+AE   FS 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSH 211


>gi|261346766|ref|ZP_05974410.1| tRNA nucleotidyltransferase [Providencia rustigianii DSM 4541]
 gi|282565165|gb|EFB70700.1| tRNA nucleotidyltransferase [Providencia rustigianii DSM 4541]
          Length = 237

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 118/238 (49%), Positives = 161/238 (67%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  +QMR I +TR  +K+AEGS L++FGDT +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPAGRLADQMRPIKITRNYTKHAEGSVLIEFGDTKVLCTATVEDGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+Q GR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATNSRNQREAAKGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L +M     K   S  LK  VAA+S G++    + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALVDALNNM-IAQGKITKSP-LKAMVAAVSVGIVKQEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VM D G ++EVQG+AE   FS +    +L LAK  +  + + Q++ +
Sbjct: 179 EDSAAETDMNVVMMDDGRMIEVQGTAEGEPFSHEELLELLALAKTGLDTIFEAQREAL 236


>gi|297199995|ref|ZP_06917392.1| ribonuclease PH [Streptomyces sviceus ATCC 29083]
 gi|197710467|gb|EDY54501.1| ribonuclease PH [Streptomyces sviceus ATCC 29083]
          Length = 245

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 112/237 (47%), Positives = 155/237 (65%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS LV FGDT +  TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGKKLIKAGRRPLTGTVSAVSVGIVGGVPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   + D N V T  G  VEVQG+AE   F++D   ++L+LA    ++L  LQ   +
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEAEPFARDELNSLLDLAVLGCSELTVLQSKAL 239


>gi|65321848|ref|ZP_00394807.1| COG0689: RNase PH [Bacillus anthracis str. A2012]
          Length = 258

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 14  MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 74  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++    +V DL+Y
Sbjct: 134 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 191

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 192 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 251

Query: 240 N 240
           +
Sbjct: 252 D 252


>gi|311896220|dbj|BAJ28628.1| putative ribonuclease PH [Kitasatospora setae KM-6054]
          Length = 241

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 111/237 (46%), Positives = 156/237 (65%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R +++ R  SK+AEGS LV +GDT +L TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPDQLRPVTIERNWSKHAEGSVLVSYGDTKVLCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+V+D  AL    I++DCDV+QA
Sbjct: 63  EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDHRALAENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +    +        Q + G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALVDAVSWAREKKLLRAKGQPITGGVSAVSVGIIDGVPMLDLRYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   + D N V T  G  VEVQG+AE A F +D    +L+L     A+L ++Q+  +
Sbjct: 183 DVRAETDMNIVCTSDGRFVEVQGTAEGAPFDRDLLNQLLDLGSLGCAELDEIQRKAL 239


>gi|229117982|ref|ZP_04247342.1| Ribonuclease PH [Bacillus cereus Rock1-3]
 gi|228665431|gb|EEL20913.1| Ribonuclease PH [Bacillus cereus Rock1-3]
          Length = 245

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++    +V DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRTQLNELLDAAEQGIFQLIDMQKEALG 238

Query: 240 N 240
           +
Sbjct: 239 D 239


>gi|311743617|ref|ZP_07717423.1| tRNA nucleotidyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311312747|gb|EFQ82658.1| tRNA nucleotidyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 240

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 115/238 (48%), Positives = 154/238 (64%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R+I +TR    +A+GSCL++FG T +L  A   E VP W + +  GW+TA
Sbjct: 4   REDGRAVDQLRDIRITRGWLDHAQGSCLIEFGKTRVLCAAAASEGVPRWRKGSGLGWVTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP++T +R  RE+V GR GGR+ EI R++GR+LR+ +D  ALG   I IDCDV+QA
Sbjct: 64  EYAMLPQATHDRSSRESVKGRIGGRTHEISRLVGRSLRATIDDKALGENTITIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA++AL D + H++         + L   VAAIS G++ G P++DL Y E
Sbjct: 124 DGGTRTAAITGAYIALADAVAHLKGLGATA--GEPLVESVAAISVGIVDGVPMLDLPYVE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D     D N VMT SG  VEVQG+AE   F +    A+L LA    ADL +LQ + +S
Sbjct: 182 DVRAHTDMNVVMTGSGAFVEVQGTAEGQPFDKAELDALLELAAGGCADLTRLQTEALS 239


>gi|269120934|ref|YP_003309111.1| ribonuclease PH [Sebaldella termitidis ATCC 33386]
 gi|268614812|gb|ACZ09180.1| ribonuclease PH [Sebaldella termitidis ATCC 33386]
          Length = 232

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 108/234 (46%), Positives = 153/234 (65%), Gaps = 4/234 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +++REI +T+    + EGS L++FG+T ++  AT+EEKVP +++ +  GW+T
Sbjct: 1   MRNNNRKNDELREIKITKNFIMHPEGSVLIEFGNTKVICNATVEEKVPPFLKGSGSGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R +RE   G+  GR+ EIQR+IGR+LRS VDL  LG R II+DCDVIQ
Sbjct: 61  AEYSMIPRATNVRTQREVNKGKPTGRTMEIQRLIGRSLRSAVDLKKLGERTIIVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITG ++AL   ++ +    N   LSQ  +   VAAIS G + G  ++DL+Y
Sbjct: 121 ADGGTRTASITGGYLALETAVEQL---INSGLLSQNPVIAKVAAISVGKVKGEILLDLEY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
            EDS  +VD N VM      +E+QG+ E ATFS D     +  AK     L ++
Sbjct: 178 SEDSLAEVDMNIVMNSKNEFIEIQGTGEEATFSYDELIKFIEAAKKGFEKLFEI 231


>gi|269955862|ref|YP_003325651.1| ribonuclease PH [Xylanimonas cellulosilytica DSM 15894]
 gi|269304543|gb|ACZ30093.1| ribonuclease PH [Xylanimonas cellulosilytica DSM 15894]
          Length = 262

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 113/240 (47%), Positives = 155/240 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R + +TR     AEGS LV+FG T +L  A+  E VP W + +  GW+TA
Sbjct: 20  RADGRAPDELRAVKITRGWLDAAEGSVLVEFGGTRVLCAASFTEGVPRWKKGSGEGWVTA 79

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+++D+SALG   I++DCDV+QA
Sbjct: 80  EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRAIIDVSALGENTIVLDCDVLQA 139

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +       +     +VL   V+A+S G++ G P++DL Y E
Sbjct: 140 DGGTRTAAITGAYVALADAVAWGRRHGHIKGGKEVLTDSVSAVSVGIVDGVPMLDLPYVE 199

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D     D N V+T SG  VEVQG+AE   F +    A+L+LA    A L +LQ+  ++ E
Sbjct: 200 DVRAGTDMNVVVTGSGTFVEVQGTAEHGAFDRAELDALLDLAVAGNARLAELQRAALAEE 259


>gi|229032136|ref|ZP_04188113.1| Ribonuclease PH [Bacillus cereus AH1271]
 gi|228729192|gb|EEL80191.1| Ribonuclease PH [Bacillus cereus AH1271]
          Length = 245

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++    +V DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVQEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238

Query: 240 N 240
           +
Sbjct: 239 D 239


>gi|255102475|ref|ZP_05331452.1| ribonuclease PH [Clostridium difficile QCD-63q42]
          Length = 449

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 111/233 (47%), Positives = 157/233 (67%), Gaps = 2/233 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R   Q+R + +TR  +KYAEGS L++ G+T ++ TA++EEKVP ++RN+  GWI AEY M
Sbjct: 7   RSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINAEYSM 66

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LPR+T  R  R+A  G+  GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQADGGT
Sbjct: 67  LPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQADGGT 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTA+ITGA+VA+ + +  +       ++   +   V+AIS G++ G  ++DL Y EDS  
Sbjct: 127 RTASITGAFVAVAEAIYKLYKAKTIKEMP--ITNFVSAISVGIVNGIHMLDLCYEEDSKA 184

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            VD N +MTD    VEVQG+ E   FS+     +L L +    +LI+LQ++ +
Sbjct: 185 QVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREAL 237


>gi|254976907|ref|ZP_05273379.1| ribonuclease PH [Clostridium difficile QCD-66c26]
 gi|255316047|ref|ZP_05357630.1| ribonuclease PH [Clostridium difficile QCD-76w55]
 gi|255518704|ref|ZP_05386380.1| ribonuclease PH [Clostridium difficile QCD-97b34]
 gi|255651826|ref|ZP_05398728.1| ribonuclease PH [Clostridium difficile QCD-37x79]
 gi|260684852|ref|YP_003216137.1| ribonuclease Ph [Clostridium difficile CD196]
 gi|260688510|ref|YP_003219644.1| ribonuclease Ph [Clostridium difficile R20291]
 gi|306521613|ref|ZP_07407960.1| ribonuclease Ph [Clostridium difficile QCD-32g58]
 gi|260211015|emb|CBA66330.1| ribonuclease Ph [Clostridium difficile CD196]
 gi|260214527|emb|CBE07044.1| ribonuclease Ph [Clostridium difficile R20291]
          Length = 449

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 111/233 (47%), Positives = 157/233 (67%), Gaps = 2/233 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R   Q+R + +TR  +KYAEGS L++ G+T ++ TA++EEKVP ++RN+  GWI AEY M
Sbjct: 7   RSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINAEYSM 66

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LPR+T  R  R+A  G+  GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQADGGT
Sbjct: 67  LPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQADGGT 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTA+ITGA+VA+ + +  +       ++   +   V+AIS G++ G  ++DL Y EDS  
Sbjct: 127 RTASITGAFVAVAEAIYKLYKAKTIKEMP--ITNFVSAISVGIVNGIHMLDLCYEEDSKA 184

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            VD N +MTD    VEVQG+ E   FS+     +L L +    +LI+LQ++ +
Sbjct: 185 QVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREAL 237


>gi|75760745|ref|ZP_00740767.1| Ribonuclease PH [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|218899648|ref|YP_002448059.1| ribonuclease PH [Bacillus cereus G9842]
 gi|228903010|ref|ZP_04067149.1| Ribonuclease PH [Bacillus thuringiensis IBL 4222]
 gi|228967584|ref|ZP_04128608.1| Ribonuclease PH [Bacillus thuringiensis serovar sotto str. T04001]
 gi|226736885|sp|B7IIZ1|RNPH_BACC2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|74491773|gb|EAO54967.1| Ribonuclease PH [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|218545068|gb|ACK97462.1| ribonuclease PH [Bacillus cereus G9842]
 gi|228792108|gb|EEM39686.1| Ribonuclease PH [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228856603|gb|EEN01124.1| Ribonuclease PH [Bacillus thuringiensis IBL 4222]
          Length = 245

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++    +V DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEKGIFQLIDMQKEALG 238

Query: 240 N 240
           +
Sbjct: 239 D 239


>gi|317124457|ref|YP_004098569.1| RNAse PH [Intrasporangium calvum DSM 43043]
 gi|315588545|gb|ADU47842.1| RNAse PH [Intrasporangium calvum DSM 43043]
          Length = 256

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 115/239 (48%), Positives = 155/239 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  ++ RE+ +TR    +AEGS LV+FG T +L  A+  E VP W++    GW+TA
Sbjct: 11  RHDGRAPDETREVRITRGWLDHAEGSVLVEFGRTRVLCAASFTEGVPRWLKGRGTGWVTA 70

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 71  EYAMLPRATNTRSDRESVKGRIGGRTHEISRLIGRSLRAVIDTKALGENTIVLDCDVLQA 130

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D ++         + +Q L G VAA+S G++ G  ++DLDY E
Sbjct: 131 DGGTRTAAITGAYVALADAIEDARARGLIAKGAQPLTGSVAAVSVGIVGGRAVIDLDYPE 190

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DST + D N VMT  G  +EVQG+AE   F +     +L LA    ADL   Q+  +++
Sbjct: 191 DSTAETDMNVVMTGDGRYIEVQGTAEGEPFDRALLDDLLELAAKGCADLTAAQRAALAS 249


>gi|50955004|ref|YP_062292.1| ribonuclease PH [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|61215900|sp|Q6AEK9|RNPH_LEIXX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|50951486|gb|AAT89187.1| ribonuclease PH [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 251

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 112/239 (46%), Positives = 155/239 (64%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q+R +++ R  ++ AEGS LV FG T +L TA+    VP W+     GW+T
Sbjct: 5   IRADGRTADQLRPVTIERAWNRKAEGSALVSFGGTRVLCTASFTNGVPRWMSGKGRGWVT 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST +R+ RE+V GR GGR+ EI R+IGR+LR+VVD+ ALG   I++DCDV+Q
Sbjct: 65  AEYAMLPRSTNDRMDRESVKGRIGGRTHEISRLIGRSLRAVVDMKALGENTIVLDCDVLQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D L+   +     Q +  L   V+A+S G++ G P++DL Y 
Sbjct: 125 ADGGTRTAAITGAYVALADALEWGREHRFIGQKAAPLLDSVSAVSVGIVDGSPMLDLAYT 184

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED   + D N V+T  G  VEVQG+AE A F +     +L+LA      L+ +Q   ++
Sbjct: 185 EDVRAETDMNVVVTGRGLFVEVQGTAEGAPFDRSELNGLLDLALAGTTALVAVQSAALA 243


>gi|30022573|ref|NP_834204.1| ribonuclease PH [Bacillus cereus ATCC 14579]
 gi|42783632|ref|NP_980879.1| ribonuclease PH [Bacillus cereus ATCC 10987]
 gi|206969838|ref|ZP_03230792.1| ribonuclease PH [Bacillus cereus AH1134]
 gi|206976011|ref|ZP_03236921.1| ribonuclease PH [Bacillus cereus H3081.97]
 gi|217961976|ref|YP_002340546.1| ribonuclease PH [Bacillus cereus AH187]
 gi|222097944|ref|YP_002532001.1| ribonuclease ph [Bacillus cereus Q1]
 gi|228910315|ref|ZP_04074132.1| Ribonuclease PH [Bacillus thuringiensis IBL 200]
 gi|228960757|ref|ZP_04122396.1| Ribonuclease PH [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228987732|ref|ZP_04147843.1| Ribonuclease PH [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229048198|ref|ZP_04193767.1| Ribonuclease PH [Bacillus cereus AH676]
 gi|229071999|ref|ZP_04205209.1| Ribonuclease PH [Bacillus cereus F65185]
 gi|229081747|ref|ZP_04214240.1| Ribonuclease PH [Bacillus cereus Rock4-2]
 gi|229111953|ref|ZP_04241497.1| Ribonuclease PH [Bacillus cereus Rock1-15]
 gi|229129777|ref|ZP_04258744.1| Ribonuclease PH [Bacillus cereus BDRD-Cer4]
 gi|229141223|ref|ZP_04269762.1| Ribonuclease PH [Bacillus cereus BDRD-ST26]
 gi|229147051|ref|ZP_04275411.1| Ribonuclease PH [Bacillus cereus BDRD-ST24]
 gi|229152684|ref|ZP_04280872.1| Ribonuclease PH [Bacillus cereus m1550]
 gi|229158099|ref|ZP_04286169.1| Ribonuclease PH [Bacillus cereus ATCC 4342]
 gi|229180760|ref|ZP_04308098.1| Ribonuclease PH [Bacillus cereus 172560W]
 gi|229198610|ref|ZP_04325312.1| Ribonuclease PH [Bacillus cereus m1293]
 gi|296504969|ref|YP_003666669.1| ribonuclease PH [Bacillus thuringiensis BMB171]
 gi|61215974|sp|Q72ZT1|RNPH_BACC1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61216033|sp|Q817P3|RNPH_BACCR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736887|sp|B7HQP4|RNPH_BACC7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808580|sp|B9IZ73|RNPH_BACCQ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|29898131|gb|AAP11405.1| Ribonuclease PH [Bacillus cereus ATCC 14579]
 gi|42739561|gb|AAS43487.1| ribonuclease PH [Bacillus cereus ATCC 10987]
 gi|206735526|gb|EDZ52694.1| ribonuclease PH [Bacillus cereus AH1134]
 gi|206745763|gb|EDZ57160.1| ribonuclease PH [Bacillus cereus H3081.97]
 gi|217063584|gb|ACJ77834.1| ribonuclease PH [Bacillus cereus AH187]
 gi|221242002|gb|ACM14712.1| ribonuclease PH [Bacillus cereus Q1]
 gi|228584892|gb|EEK43008.1| Ribonuclease PH [Bacillus cereus m1293]
 gi|228602738|gb|EEK60221.1| Ribonuclease PH [Bacillus cereus 172560W]
 gi|228625418|gb|EEK82175.1| Ribonuclease PH [Bacillus cereus ATCC 4342]
 gi|228630830|gb|EEK87471.1| Ribonuclease PH [Bacillus cereus m1550]
 gi|228636439|gb|EEK92909.1| Ribonuclease PH [Bacillus cereus BDRD-ST24]
 gi|228642264|gb|EEK98556.1| Ribonuclease PH [Bacillus cereus BDRD-ST26]
 gi|228653693|gb|EEL09564.1| Ribonuclease PH [Bacillus cereus BDRD-Cer4]
 gi|228671517|gb|EEL26817.1| Ribonuclease PH [Bacillus cereus Rock1-15]
 gi|228701592|gb|EEL54085.1| Ribonuclease PH [Bacillus cereus Rock4-2]
 gi|228711158|gb|EEL63123.1| Ribonuclease PH [Bacillus cereus F65185]
 gi|228723185|gb|EEL74561.1| Ribonuclease PH [Bacillus cereus AH676]
 gi|228772006|gb|EEM20461.1| Ribonuclease PH [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228798973|gb|EEM45948.1| Ribonuclease PH [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228849375|gb|EEM94212.1| Ribonuclease PH [Bacillus thuringiensis IBL 200]
 gi|296326021|gb|ADH08949.1| ribonuclease PH [Bacillus thuringiensis BMB171]
 gi|324328384|gb|ADY23644.1| ribonuclease PH [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 245

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++    +V DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238

Query: 240 N 240
           +
Sbjct: 239 D 239


>gi|188588196|ref|YP_001919836.1| ribonuclease PH [Clostridium botulinum E3 str. Alaska E43]
 gi|251780372|ref|ZP_04823292.1| tRNA nucleotidyltransferase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|226736898|sp|B2UZ31|RNPH_CLOBA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|188498477|gb|ACD51613.1| ribonuclease PH [Clostridium botulinum E3 str. Alaska E43]
 gi|243084687|gb|EES50577.1| tRNA nucleotidyltransferase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 249

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 111/236 (47%), Positives = 157/236 (66%), Gaps = 2/236 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+  Q+R + +TR  +KYAEGS  ++ GDT +L   ++E+KVP +++ T  GWIT
Sbjct: 1   MRIDGRKNEQIRHVKVTRHYTKYAEGSVYIEVGDTKVLCNVSIEDKVPPFMKGTGSGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST  R  R+    +  GR+ EIQR+IGRALRSVVDL ALG + + IDCDVIQ
Sbjct: 61  AEYNMLPRSTETRKIRDIARLKIDGRTMEIQRLIGRALRSVVDLKALGEKTLWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT AI+GA++AL D +  +      F++  + +  VAA+S G++    I+DL Y 
Sbjct: 121 ADGGTRTTAISGAFIALVDAVNKLHKIK-PFKIYPI-RSFVAAVSVGIVNEEKILDLCYQ 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           EDS   VD N +MTD G  VEVQG+ E + +++     +L+L +  I  +I +QK+
Sbjct: 179 EDSKAKVDMNIIMTDEGSFVEVQGTGEESPYTRTELNELLDLGEKGIKQMINVQKE 234


>gi|228954763|ref|ZP_04116785.1| Ribonuclease PH [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|107124175|gb|ABF83610.1| Rph [Bacillus thuringiensis serovar kurstaki]
 gi|228804961|gb|EEM51558.1| Ribonuclease PH [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 245

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++    +V DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQVEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238

Query: 240 N 240
           +
Sbjct: 239 D 239


>gi|228941669|ref|ZP_04104216.1| Ribonuclease PH [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228974596|ref|ZP_04135162.1| Ribonuclease PH [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228981191|ref|ZP_04141491.1| Ribonuclease PH [Bacillus thuringiensis Bt407]
 gi|228778391|gb|EEM26658.1| Ribonuclease PH [Bacillus thuringiensis Bt407]
 gi|228784999|gb|EEM33012.1| Ribonuclease PH [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228817881|gb|EEM63959.1| Ribonuclease PH [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326942277|gb|AEA18173.1| ribonuclease PH [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 245

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++    +V DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEKGIFQLIDIQKEALG 238

Query: 240 N 240
           +
Sbjct: 239 D 239


>gi|223365844|pdb|3DD6|A Chain A, Crystal Structure Of Rph, An Exoribonuclease From Bacillus
           Anthracis At 1.7 A Resolution
          Length = 255

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 11  MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 70

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 71  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++    +V DL+Y
Sbjct: 131 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 188

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 189 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 248

Query: 240 N 240
           +
Sbjct: 249 D 249


>gi|329119666|ref|ZP_08248347.1| tRNA nucleotidyltransferase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464263|gb|EGF10567.1| tRNA nucleotidyltransferase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 241

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 112/234 (47%), Positives = 159/234 (67%), Gaps = 2/234 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  + +R + +T     +A+GS L++ G+T ++ TA+++E VP ++R    GWITAEYGM
Sbjct: 9   RAADALRPVRITPHFLPHADGSALIECGNTRVICTASIDENVPPFLRGQGQGWITAEYGM 68

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP +T  R +REA +G+Q GR+QEIQR+IGR+LR+  DL  LG RQI+IDCDVIQADGGT
Sbjct: 69  LPAATATRSRREAAAGKQSGRTQEIQRLIGRSLRAAADLQKLGERQILIDCDVIQADGGT 128

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTA+ITGA+VAL   ++ +   S+       L   +AA+S G++ G P++DLDY EDS  
Sbjct: 129 RTASITGAYVALALAVRKL--LSDGLIAENPLVSQIAAVSAGIVGGVPLLDLDYPEDSGC 186

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D D N VM  +G I+E+QG+AE A FS     A+L LA+  I +L+  QK  ++
Sbjct: 187 DSDVNIVMNGAGGIIEIQGTAEGAPFSPAELAALLRLAQKGIGELMAEQKRALA 240


>gi|118418871|gb|ABK87290.1| RNAse PH [Bacillus thuringiensis str. Al Hakam]
          Length = 251

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 7   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 66

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 67  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 126

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++    +V DL+Y
Sbjct: 127 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 184

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 185 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 244

Query: 240 N 240
           +
Sbjct: 245 D 245


>gi|196230861|ref|ZP_03129722.1| ribonuclease PH [Chthoniobacter flavus Ellin428]
 gi|196225202|gb|EDY19711.1| ribonuclease PH [Chthoniobacter flavus Ellin428]
          Length = 256

 Score =  221 bits (564), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 115/241 (47%), Positives = 156/241 (64%), Gaps = 4/241 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK--HGWI 59
           R  GR+ +Q+R IS T  ++ ++ GS LV  G+T ++ +A +EE +P W++  K   GW+
Sbjct: 3   RNDGRKNDQLRPISFTPNIAPHSTGSVLVAAGNTRVICSAMIEESIPNWMKFQKVPGGWL 62

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           TAEY MLP ST  R +R++  GR  GRS EIQR+IGR+LR+VVDL  LG R + IDCDV+
Sbjct: 63  TAEYSMLPYSTLERKQRDSAKGRIDGRSVEIQRLIGRSLRAVVDLDLLGPRTLCIDCDVL 122

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTRTA+ITGA VA    ++ +     K      +K  VAA+S G++ G P++DL+Y
Sbjct: 123 QADGGTRTASITGACVAASLAVEKL--IEKKLLTKSPIKQLVAAVSVGVVNGEPMLDLNY 180

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED    VD N VMT +G  VEVQGS E  TFS+    AM+ L K  I +LI  Q+  IS
Sbjct: 181 LEDKDASVDMNLVMTANGQFVEVQGSGEEQTFSESELAAMMTLGKKGIGELIAAQRAAIS 240

Query: 240 N 240
           +
Sbjct: 241 S 241


>gi|30264550|ref|NP_846927.1| ribonuclease PH [Bacillus anthracis str. Ames]
 gi|47530015|ref|YP_021364.1| ribonuclease PH [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187372|ref|YP_030624.1| ribonuclease PH [Bacillus anthracis str. Sterne]
 gi|49481507|ref|YP_038534.1| ribonuclease PH [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52141017|ref|YP_085813.1| ribonuclease PH [Bacillus cereus E33L]
 gi|162382773|ref|YP_896797.2| ribonuclease PH [Bacillus thuringiensis str. Al Hakam]
 gi|165871495|ref|ZP_02216142.1| ribonuclease PH [Bacillus anthracis str. A0488]
 gi|167635642|ref|ZP_02393954.1| ribonuclease PH [Bacillus anthracis str. A0442]
 gi|167641666|ref|ZP_02399911.1| ribonuclease PH [Bacillus anthracis str. A0193]
 gi|170688310|ref|ZP_02879520.1| ribonuclease PH [Bacillus anthracis str. A0465]
 gi|170708334|ref|ZP_02898778.1| ribonuclease PH [Bacillus anthracis str. A0389]
 gi|177653076|ref|ZP_02935363.1| ribonuclease PH [Bacillus anthracis str. A0174]
 gi|190566932|ref|ZP_03019848.1| ribonuclease PH [Bacillus anthracis Tsiankovskii-I]
 gi|196034453|ref|ZP_03101862.1| ribonuclease PH [Bacillus cereus W]
 gi|196039169|ref|ZP_03106475.1| tRNA nucleotidyltransferase [Bacillus cereus NVH0597-99]
 gi|196044912|ref|ZP_03112146.1| ribonuclease PH [Bacillus cereus 03BB108]
 gi|218905683|ref|YP_002453517.1| ribonuclease PH [Bacillus cereus AH820]
 gi|225866464|ref|YP_002751842.1| ribonuclease PH [Bacillus cereus 03BB102]
 gi|227817261|ref|YP_002817270.1| ribonuclease PH [Bacillus anthracis str. CDC 684]
 gi|228929528|ref|ZP_04092547.1| Ribonuclease PH [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228935800|ref|ZP_04098612.1| Ribonuclease PH [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228948205|ref|ZP_04110489.1| Ribonuclease PH [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|229093577|ref|ZP_04224678.1| Ribonuclease PH [Bacillus cereus Rock3-42]
 gi|229124021|ref|ZP_04253213.1| Ribonuclease PH [Bacillus cereus 95/8201]
 gi|229186723|ref|ZP_04313881.1| Ribonuclease PH [Bacillus cereus BGSC 6E1]
 gi|229601018|ref|YP_002868764.1| tRNA nucleotidyltransferase [Bacillus anthracis str. A0248]
 gi|254687030|ref|ZP_05150888.1| ribonuclease PH [Bacillus anthracis str. CNEVA-9066]
 gi|254724592|ref|ZP_05186375.1| ribonuclease PH [Bacillus anthracis str. A1055]
 gi|254736584|ref|ZP_05194290.1| ribonuclease PH [Bacillus anthracis str. Western North America
           USA6153]
 gi|254741622|ref|ZP_05199309.1| ribonuclease PH [Bacillus anthracis str. Kruger B]
 gi|254754780|ref|ZP_05206815.1| ribonuclease PH [Bacillus anthracis str. Vollum]
 gi|254757612|ref|ZP_05209639.1| ribonuclease PH [Bacillus anthracis str. Australia 94]
 gi|301055992|ref|YP_003794203.1| ribonuclease PH [Bacillus anthracis CI]
 gi|61215848|sp|Q633V4|RNPH_BACCZ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61215928|sp|Q6HD42|RNPH_BACHK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61216034|sp|Q81LA9|RNPH_BACAN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736884|sp|B7JQ74|RNPH_BACC0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808577|sp|C3PA74|RNPH_BACAA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808578|sp|C3L7T5|RNPH_BACAC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808579|sp|C1ETS9|RNPH_BACC3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|30259208|gb|AAP28413.1| tRNA nucleotidyltransferase [Bacillus anthracis str. Ames]
 gi|47505163|gb|AAT33839.1| ribonuclease PH [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181299|gb|AAT56675.1| ribonuclease PH [Bacillus anthracis str. Sterne]
 gi|49333063|gb|AAT63709.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974486|gb|AAU16036.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Bacillus
           cereus E33L]
 gi|164712792|gb|EDR18322.1| ribonuclease PH [Bacillus anthracis str. A0488]
 gi|167510373|gb|EDR85774.1| ribonuclease PH [Bacillus anthracis str. A0193]
 gi|167529062|gb|EDR91817.1| ribonuclease PH [Bacillus anthracis str. A0442]
 gi|170126709|gb|EDS95592.1| ribonuclease PH [Bacillus anthracis str. A0389]
 gi|170667816|gb|EDT18569.1| ribonuclease PH [Bacillus anthracis str. A0465]
 gi|172081600|gb|EDT66671.1| ribonuclease PH [Bacillus anthracis str. A0174]
 gi|190561923|gb|EDV15892.1| ribonuclease PH [Bacillus anthracis Tsiankovskii-I]
 gi|195992995|gb|EDX56954.1| ribonuclease PH [Bacillus cereus W]
 gi|196024400|gb|EDX63073.1| ribonuclease PH [Bacillus cereus 03BB108]
 gi|196029796|gb|EDX68397.1| tRNA nucleotidyltransferase [Bacillus cereus NVH0597-99]
 gi|218536266|gb|ACK88664.1| ribonuclease PH [Bacillus cereus AH820]
 gi|225790478|gb|ACO30695.1| tRNA nucleotidyltransferase [Bacillus cereus 03BB102]
 gi|227004760|gb|ACP14503.1| tRNA nucleotidyltransferase [Bacillus anthracis str. CDC 684]
 gi|228596736|gb|EEK54398.1| Ribonuclease PH [Bacillus cereus BGSC 6E1]
 gi|228659323|gb|EEL14971.1| Ribonuclease PH [Bacillus cereus 95/8201]
 gi|228689786|gb|EEL43592.1| Ribonuclease PH [Bacillus cereus Rock3-42]
 gi|228811563|gb|EEM57900.1| Ribonuclease PH [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228823857|gb|EEM69677.1| Ribonuclease PH [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228830107|gb|EEM75725.1| Ribonuclease PH [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|229265426|gb|ACQ47063.1| tRNA nucleotidyltransferase [Bacillus anthracis str. A0248]
 gi|300378161|gb|ADK07065.1| ribonuclease PH [Bacillus cereus biovar anthracis str. CI]
          Length = 245

 Score =  221 bits (564), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++    +V DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 238

Query: 240 N 240
           +
Sbjct: 239 D 239


>gi|300932726|ref|ZP_07147982.1| ribonuclease PH [Corynebacterium resistens DSM 45100]
          Length = 250

 Score =  221 bits (564), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 112/238 (47%), Positives = 158/238 (66%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  ++MR + +TR  +    GS LV+FG+T ++ TA++E  VP + +++  GW+TA
Sbjct: 11  RADGRAVDEMRPVRITRGFTTNPAGSVLVEFGNTRVMCTASVEIGVPRFKKDSGEGWLTA 70

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R+ RE++ G+  GR+ EI R++GRALR+ VDL+ LG   I IDCDV+QA
Sbjct: 71  EYAMLPSSTHERMPRESMKGKVKGRTHEISRLVGRALRAAVDLTQLGENTIAIDCDVLQA 130

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D L+ +++        + L   VAA+S G++ G   +DL Y E
Sbjct: 131 DGGTRTAAITGAYVALADALKVLKE--QGVVPGEPLLPPVAAVSVGIIDGVACLDLPYEE 188

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  DVD N VMT+ G  VE+QG+ E A F +    AMLNLA+  + +LI  QK+ ++
Sbjct: 189 DSRADVDMNVVMTEQGRFVEIQGTGEHAEFDRAELNAMLNLAEGGLRELISAQKEALA 246


>gi|187933801|ref|YP_001884652.1| ribonuclease PH [Clostridium botulinum B str. Eklund 17B]
 gi|226736899|sp|B2TJ05|RNPH_CLOBB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|187721954|gb|ACD23175.1| tRNA nucleotidyltransferase [Clostridium botulinum B str. Eklund
           17B]
          Length = 249

 Score =  221 bits (564), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 111/236 (47%), Positives = 157/236 (66%), Gaps = 2/236 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+  Q+R + +TR  +KYAEGS  ++ GDT +L   ++E+KVP +++ T  GWIT
Sbjct: 1   MRIDGRKNEQIRHVKVTRHYTKYAEGSVYIEVGDTKVLCNVSIEDKVPPFMKGTGSGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST  R  R+    +  GR+ EIQR+IGRALRSVVDL ALG + + IDCDVIQ
Sbjct: 61  AEYNMLPRSTETRKIRDIARLKIDGRTMEIQRLIGRALRSVVDLKALGEKTLWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT AI+GA++AL D +  +      F++  + +  VAA+S G++    I+DL Y 
Sbjct: 121 ADGGTRTTAISGAFIALVDAVNKLHKIK-PFKIYPI-RSFVAAVSVGIVNEEKILDLCYQ 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           EDS   VD N +MTD G  VEVQG+ E + +++     +L+L +  I  +I +QK+
Sbjct: 179 EDSKAKVDMNIIMTDEGSFVEVQGTGEESPYTRAELNELLDLGEKGIKQMINVQKE 234


>gi|237785978|ref|YP_002906683.1| ribonuclease PH [Corynebacterium kroppenstedtii DSM 44385]
 gi|259494118|sp|C4LJY5|RNPH_CORK4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|237758890|gb|ACR18140.1| ribonuclease PH [Corynebacterium kroppenstedtii DSM 44385]
          Length = 254

 Score =  221 bits (564), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 105/240 (43%), Positives = 162/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  ++MR + + R  +    GS LV+FG+T ++ TA++E++VP + +++  GW+T
Sbjct: 5   VRADGRALDEMRPVRIVRGFTTNPAGSVLVEFGNTRVMCTASVEDRVPRFKKDSGEGWLT 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP +T  R+ RE++ G+  GR+ EI R++GR+LR+ +DL ALG   I +DCDV+Q
Sbjct: 65  AEYSMLPSATAERMPRESMRGKVKGRTHEISRLVGRSLRAAIDLKALGENTIALDCDVLQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D L ++E  +        L   VAA+S G++ G+  +DL Y 
Sbjct: 125 ADGGTRTASITGAYVALADALTYLE--AEGLVSQNALLPPVAAVSVGLIDGHVCLDLPYE 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  +VD N VMT+SG  VE+QG+ E +TFS++     ++ A+   ++LI+ QK+ +S 
Sbjct: 183 EDSRAEVDMNVVMTESGEFVEIQGTGEHSTFSREQLMQFMDAAEKGCSELIRAQKEALSK 242


>gi|255094294|ref|ZP_05323772.1| ribonuclease PH [Clostridium difficile CIP 107932]
          Length = 378

 Score =  221 bits (564), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 111/233 (47%), Positives = 157/233 (67%), Gaps = 2/233 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R   Q+R + +TR  +KYAEGS L++ G+T ++ TA++EEKVP ++RN+  GWI AEY M
Sbjct: 7   RSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINAEYSM 66

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LPR+T  R  R+A  G+  GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQADGGT
Sbjct: 67  LPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQADGGT 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTA+ITGA+VA+ + +  +       ++   +   V+AIS G++ G  ++DL Y EDS  
Sbjct: 127 RTASITGAFVAVAEAIYKLYKAKTIKEMP--ITNFVSAISVGIVNGIHMLDLCYEEDSKA 184

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            VD N +MTD    VEVQG+ E   FS+     +L L +    +LI+LQ++ +
Sbjct: 185 QVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREAL 237


>gi|162147173|ref|YP_001601634.1| ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785750|emb|CAP55321.1| putative Ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5]
          Length = 275

 Score =  221 bits (564), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 118/237 (49%), Positives = 157/237 (66%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  + +R IS+    + +AEGS L++ G T +L  AT+E +VP ++R    GW+TA
Sbjct: 31  RPSGRAPDALRAISIEPGFAHHAEGSALIRMGGTEVLCAATVESRVPPFLRGQGKGWVTA 90

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVDL ALG   I +DCDV+ A
Sbjct: 91  EYGMLPRATHTRGGREAAKGKQSGRTQEIQRLIGRSLRAVVDLEALGEMSITVDCDVLNA 150

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+ITGAWVAL   L+ +    N+      L   VAA+SCG+     ++DLDY E
Sbjct: 151 DGGTRCASITGAWVALRLALETL--VRNRVLARLPLTAQVAAVSCGLTGAGAVLDLDYDE 208

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS    DANFV+T++G IVE+Q +AE A F+QD F  +L LA+   A L   Q+  +
Sbjct: 209 DSAAAADANFVLTETGGIVEIQATAEHAPFAQDQFDTLLRLARTGTAQLFIAQRQAV 265


>gi|16800270|ref|NP_470538.1| ribonuclease PH [Listeria innocua Clip11262]
 gi|21759406|sp|Q92CH1|RNPH_LISIN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|16413660|emb|CAC96432.1| lin1201 [Listeria innocua Clip11262]
          Length = 248

 Score =  221 bits (564), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 114/245 (46%), Positives = 165/245 (67%), Gaps = 7/245 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR++N +REI +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 1   MRFDGREKNALREIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMED--CSNKFQLSQVLKGHVAAISCGML-CGYPIVDL 177
           ADGGTRTA+ITGA++A+   +  +++     KF     +K  +AA S G+L  G  ++DL
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEEVPFTKFP----VKDFLAATSVGVLEEGGTVLDL 176

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +Y EDS   VD N +MT SG  VE+QG+ E ATFS+     ++ L K  I++LI++QK+ 
Sbjct: 177 NYVEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKET 236

Query: 238 ISNEV 242
           + +++
Sbjct: 237 LGDKI 241


>gi|296328289|ref|ZP_06870818.1| ribonuclease PH/Ham1 protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154593|gb|EFG95381.1| ribonuclease PH/Ham1 protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 434

 Score =  221 bits (563), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 110/241 (45%), Positives = 157/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  N+ R+I +T+ V+ YAEGS L++ G+T ++ TA++ +KVP ++R T  GW+T
Sbjct: 2   LREDGRNFNEERKIKITKNVNIYAEGSVLIEVGNTKVICTASVSDKVPSFLRGTGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+IGRALR+ +DL  LG R I IDCDVIQ
Sbjct: 62  AEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG ++AL   ++ +     +      L  +VAAIS G +    +VDL Y 
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKL--LQEEILEEDPLISNVAAISVGKINSNLMVDLKYS 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   +VD N +M      +EVQG+ E +TF++     +L+LA++ I  LI+LQ  +I+ 
Sbjct: 180 EDFAAEVDMNVIMNKKDEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQDRIINQ 239

Query: 241 E 241
           E
Sbjct: 240 E 240


>gi|312143229|ref|YP_003994675.1| ribonuclease PH [Halanaerobium sp. 'sapolanicus']
 gi|311903880|gb|ADQ14321.1| ribonuclease PH [Halanaerobium sp. 'sapolanicus']
          Length = 239

 Score =  221 bits (563), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 111/236 (47%), Positives = 164/236 (69%), Gaps = 4/236 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+ +Q+R+I +TR  +KYAEGS LV+ GDT +L   ++E+ VP ++R    GW+T
Sbjct: 1   MRNDGRELDQLRDIQITRDFTKYAEGSVLVETGDTMVLCNVSIEDSVPYFLRGQNTGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY +LPR+T +R  REA   +  GR+QEIQR+IGR+LR+++DL  +G R I +DCDV+Q
Sbjct: 61  AEYSLLPRATQDRNIREAAKRKLSGRTQEIQRLIGRSLRAIIDLDKMGERTIWVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL D +  +     + +LS+  LK  +AA S G++ G  ++DL Y
Sbjct: 121 ADGGTRTASITGAYVALVDAVNFL---LAEGKLSENPLKDFMAATSVGIVEGKAMLDLCY 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            ED    VD N  MT++G I+E+QG+AE   F+++    + +LA+  I +LI++QK
Sbjct: 178 EEDFRAQVDMNIAMTENGEIIEIQGTAEENPFTREEMNKLYDLAEKGIRELIEIQK 233


>gi|257466146|ref|ZP_05630457.1| ribonuclease PH [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917304|ref|ZP_07913544.1| ribonuclease PH [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691179|gb|EFS28014.1| ribonuclease PH [Fusobacterium gonidiaformans ATCC 25563]
          Length = 249

 Score =  221 bits (563), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 117/237 (49%), Positives = 163/237 (68%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ENQ+REI +TR  + +AEGS L++ G+T ++ TA++ EKVP +I+NT  GW+TA
Sbjct: 3   RIDGRKENQLREIKITRDFNIHAEGSVLIESGNTKVICTASVSEKVPSFIKNTGKGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY M+PR+TG R +REA  G+  GR+ EIQR+IGRALRS +DL  LG R I +DCDVIQA
Sbjct: 63  EYSMIPRATGERNQREAAKGKLSGRTMEIQRLIGRALRSSIDLEKLGERTITLDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA+      +         S VL   VAA+S G   G   +DL+Y E
Sbjct: 123 DGGTRTASITGAFVAMAIAAAKLLR-EGTITESPVLS-SVAAVSVGKCEGNIFLDLNYVE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS+ +VD N +  D G  +EVQG+ E ATF +    A+L++A+  I  L++ Q++V+
Sbjct: 181 DSSAEVDMNVIQNDLGEYIEVQGTGEEATFCRKELNALLDMAEIGIHQLLEKQREVL 237


>gi|228917119|ref|ZP_04080677.1| Ribonuclease PH [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228842537|gb|EEM87627.1| Ribonuclease PH [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 245

 Score =  221 bits (563), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++    +V DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLRAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 238

Query: 240 N 240
           +
Sbjct: 239 D 239


>gi|315302796|ref|ZP_07873561.1| ribonuclease PH [Listeria ivanovii FSL F6-596]
 gi|313628833|gb|EFR97201.1| ribonuclease PH [Listeria ivanovii FSL F6-596]
          Length = 248

 Score =  221 bits (563), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 116/243 (47%), Positives = 162/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ N +R+I +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 1   MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA++A+   +  + D    F    V K  +AA S G+L  G  ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKL-DAEVPFTKFPV-KDFLAATSVGVLEEGGTVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N +MT SG  VE+QG+ E ATFS+     ++ L K  IA+LI++QK+ + 
Sbjct: 179 IEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGIAELIEIQKETLG 238

Query: 240 NEV 242
            +V
Sbjct: 239 EKV 241


>gi|313619283|gb|EFR91024.1| ribonuclease PH [Listeria innocua FSL S4-378]
 gi|313624060|gb|EFR94144.1| ribonuclease PH [Listeria innocua FSL J1-023]
          Length = 248

 Score =  221 bits (563), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 114/245 (46%), Positives = 165/245 (67%), Gaps = 7/245 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR++N +REI +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 1   MRFDGREKNALREIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMED--CSNKFQLSQVLKGHVAAISCGML-CGYPIVDL 177
           ADGGTRTA+ITGA++A+   +  +++     KF     +K  +AA S G+L  G  ++DL
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEEVPFTKFP----VKDFLAATSVGVLEEGGTVLDL 176

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +Y EDS   VD N +MT SG  VE+QG+ E ATFS+     ++ L K  I++LI++QK+ 
Sbjct: 177 NYVEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGISELIEIQKET 236

Query: 238 ISNEV 242
           + +++
Sbjct: 237 LGDKI 241


>gi|209544228|ref|YP_002276457.1| ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531905|gb|ACI51842.1| ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5]
          Length = 248

 Score =  221 bits (563), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 118/237 (49%), Positives = 157/237 (66%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  + +R IS+    + +AEGS L++ G T +L  AT+E +VP ++R    GW+TA
Sbjct: 4   RPSGRAPDALRAISIEPGFAHHAEGSALIRMGGTEVLCAATVESRVPPFLRGQGKGWVTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVDL ALG   I +DCDV+ A
Sbjct: 64  EYGMLPRATHTRGGREAAKGKQSGRTQEIQRLIGRSLRAVVDLEALGEMSITVDCDVLNA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+ITGAWVAL   L+ +    N+      L   VAA+SCG+     ++DLDY E
Sbjct: 124 DGGTRCASITGAWVALRLALETL--VRNRVLARLPLTAQVAAVSCGLTGAGAVLDLDYDE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS    DANFV+T++G IVE+Q +AE A F+QD F  +L LA+   A L   Q+  +
Sbjct: 182 DSAAAADANFVLTETGGIVEIQATAEHAPFAQDQFDTLLRLARTGTAQLFIAQRQAV 238


>gi|326330800|ref|ZP_08197101.1| tRNA nucleotidyltransferase [Nocardioidaceae bacterium Broad-1]
 gi|325951330|gb|EGD43369.1| tRNA nucleotidyltransferase [Nocardioidaceae bacterium Broad-1]
          Length = 235

 Score =  221 bits (563), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 114/239 (47%), Positives = 152/239 (63%), Gaps = 7/239 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R I +TR    +A GS L++FG T +L  A+  E VP W + +  GW+TA
Sbjct: 4   RADGRADDELRPIKITRNWLDHAAGSVLIEFGKTRVLCAASASEGVPRWRKGSGLGWVTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R  RE+V G+ GGR+ EI R++GR+LR+V+D  ALG   I IDCDV+QA
Sbjct: 64  EYAMLPASTHERSSRESVKGKIGGRTHEISRLVGRSLRAVIDYKALGENTINIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +        +S+ L G VAAIS G++ G P +DL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVASL-------GVSKALTGSVAAISVGIIDGVPRLDLPYEE 176

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   + D N VMT  G  VEVQG+AE   F +    A+L L +   ADL KLQ+  ++ 
Sbjct: 177 DVRAETDMNIVMTGEGKFVEVQGTAEGVAFDRAELDALLALGEKGCADLTKLQEAALAG 235


>gi|293374133|ref|ZP_06620467.1| tRNA nucleotidyltransferase [Turicibacter sanguinis PC909]
 gi|325837445|ref|ZP_08166427.1| tRNA nucleotidyltransferase [Turicibacter sp. HGF1]
 gi|292647236|gb|EFF65212.1| tRNA nucleotidyltransferase [Turicibacter sanguinis PC909]
 gi|325490977|gb|EGC93275.1| tRNA nucleotidyltransferase [Turicibacter sp. HGF1]
          Length = 236

 Score =  221 bits (563), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 111/237 (46%), Positives = 152/237 (64%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ N++R +        + EG+ L+  G+T ++ TAT+E K+P ++R    GWIT
Sbjct: 1   MRTNERKNNELRPVEFIPNYIMHPEGAVLISVGNTKVICTATIENKLPPFMRGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+ VDL  LG R I IDCDVIQ
Sbjct: 61  AEYSMLPRATNTRNVRESARGKLSGRTMEIQRLIGRSLRAAVDLEKLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG+ VA+      +   +        LK H+AAIS G+  G  I+DLDY 
Sbjct: 121 ADGGTRTASITGSVVAMKLAFDKL--VAEGVLKESPLKEHLAAISVGIKDGEVILDLDYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS+ +VD N +MT+SG  VE+QG+ E AT+S      ML++A   I  LI+ QK +
Sbjct: 179 EDSSAEVDMNVIMTESGQFVEIQGTGEEATYSHAELLQMLDVASQGIKQLIEAQKQI 235


>gi|254434220|ref|ZP_05047728.1| ribonuclease PH [Nitrosococcus oceani AFC27]
 gi|207090553|gb|EDZ67824.1| ribonuclease PH [Nitrosococcus oceani AFC27]
          Length = 210

 Score =  221 bits (563), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 107/210 (50%), Positives = 149/210 (70%), Gaps = 2/210 (0%)

Query: 30  VKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQE 89
           ++FG+T ++  A++E+++P +++ T  GWITAEYGMLPRST NR+ REA  GRQGGR+ E
Sbjct: 1   MEFGNTRVICNASVEDRIPRFLKGTGRGWITAEYGMLPRSTHNRMGREAAQGRQGGRTLE 60

Query: 90  IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN 149
           IQR IGRALR+VVDL+ALG   + +DCDVIQADGGTRTAAITG++VAL D + +      
Sbjct: 61  IQRFIGRALRAVVDLAALGEVTVTLDCDVIQADGGTRTAAITGSYVALVDAINNR--LKK 118

Query: 150 KFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERA 209
           +      + G +A+IS G+  G P++DLDY EDST + D N VM ++G  +E+QG+AE  
Sbjct: 119 RIITHSPIHGQLASISVGIYEGTPVLDLDYREDSTAETDMNVVMNEAGAFIEIQGTAEGH 178

Query: 210 TFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            F  +   AML+LAK  I  L+  Q +V++
Sbjct: 179 AFRMNELQAMLDLAKSGINTLLAQQTEVLA 208


>gi|317508770|ref|ZP_07966420.1| ribonuclease PH [Segniliparus rugosus ATCC BAA-974]
 gi|316252933|gb|EFV12353.1| ribonuclease PH [Segniliparus rugosus ATCC BAA-974]
          Length = 261

 Score =  221 bits (563), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 112/238 (47%), Positives = 157/238 (65%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR +++MR + +TR  +    GS LV+FG T +   A++ E VP W + T  GW+TA
Sbjct: 4   RLDGRHDDEMRPVKITRGFTGNPPGSVLVEFGQTRVFCAASVTEGVPRWRKGTGEGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V G+ GGR+QEI R+IGR+LR+ +DL+ALG   I +DCDV+QA
Sbjct: 64  EYAMLPAATATRNDRESVRGKLGGRTQEISRLIGRSLRACIDLAALGENTISVDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +   S +    Q +   +AA+S G++ G   +DL Y E
Sbjct: 124 DGGTRTAAITGAFVALSDAVTWLA-ASGRLADPQPISCAIAAVSVGLVDGRVRLDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VEVQG+AE ATF +     +L+LA   I  L+  Q++ ++
Sbjct: 183 DSRAEVDMNVVATDTGTLVEVQGTAEGATFHRKTLDKLLDLAFAGIEQLVVAQREALA 240


>gi|229105117|ref|ZP_04235768.1| Ribonuclease PH [Bacillus cereus Rock3-28]
 gi|228678298|gb|EEL32524.1| Ribonuclease PH [Bacillus cereus Rock3-28]
          Length = 258

 Score =  221 bits (563), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 160/241 (66%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR + ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 14  MRVDGRGKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 74  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++    +V DL+Y
Sbjct: 134 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVGEQGVVLDLNY 191

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 192 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRTQLNELLDAAEQGIFQLIDMQKEALG 251

Query: 240 N 240
           +
Sbjct: 252 D 252


>gi|212712586|ref|ZP_03320714.1| hypothetical protein PROVALCAL_03681 [Providencia alcalifaciens DSM
           30120]
 gi|212684802|gb|EEB44330.1| hypothetical protein PROVALCAL_03681 [Providencia alcalifaciens DSM
           30120]
          Length = 237

 Score =  221 bits (563), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 118/238 (49%), Positives = 160/238 (67%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  +QMR I +TR  +K+AEGS L++FGDT +L  AT+EE VP +++    GWIT
Sbjct: 1   MRPAGRLADQMRPIKITRNYTKHAEGSVLIEFGDTKVLCNATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+Q GR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATNSRNQREAAKGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L +M     K   S  LK  VAA+S G++    + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALVDALNNMV-AQGKLAKSP-LKSMVAAVSVGIVGQEGLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VM + G ++EVQG+AE   FS +    +L LAK  +  + + Q++ +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLELLALAKTGLDTIFEAQREAL 236


>gi|171741378|ref|ZP_02917185.1| hypothetical protein BIFDEN_00461 [Bifidobacterium dentium ATCC
           27678]
 gi|283455270|ref|YP_003359834.1| ribonuclease PH [Bifidobacterium dentium Bd1]
 gi|306823668|ref|ZP_07457043.1| tRNA nucleotidyltransferase [Bifidobacterium dentium ATCC 27679]
 gi|309803034|ref|ZP_07697135.1| tRNA nucleotidyltransferase [Bifidobacterium dentium JCVIHMP022]
 gi|171276992|gb|EDT44653.1| hypothetical protein BIFDEN_00461 [Bifidobacterium dentium ATCC
           27678]
 gi|283101904|gb|ADB09010.1| rph Ribonuclease PH [Bifidobacterium dentium Bd1]
 gi|304553375|gb|EFM41287.1| tRNA nucleotidyltransferase [Bifidobacterium dentium ATCC 27679]
 gi|308220501|gb|EFO76812.1| tRNA nucleotidyltransferase [Bifidobacterium dentium JCVIHMP022]
          Length = 254

 Score =  221 bits (562), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 108/224 (48%), Positives = 153/224 (68%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R + +TRR +   EGS L++ G+T ++ TAT    VP W +++  GW+T
Sbjct: 14  IRADGRKVDELRPVRITRRFTDVPEGSVLIECGNTRVMCTATFTSGVPRWRKDSGLGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  RE+V G+ GGR+ EI R+IGR LR VVD+ ALG  Q+ IDCDV+Q
Sbjct: 74  AEYAMLPRATADRTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENQVQIDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D ++  E   +     +VLK  V+A+S G++ G P++DL Y 
Sbjct: 134 ADGGTRTASITGAYVALVDAMRWAERHRHIKSADRVLKDCVSAVSVGVINGKPMLDLPYI 193

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           EDS    D N  MT SG  +E+QG+AE   FS+    A+L+LA+
Sbjct: 194 EDSQAMTDMNVAMTGSGEFIEIQGTAEHRPFSRAELNALLDLAE 237


>gi|152976902|ref|YP_001376419.1| ribonuclease PH [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|189043753|sp|A7GTG6|RNPH_BACCN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|152025654|gb|ABS23424.1| ribonuclease PH [Bacillus cytotoxicus NVH 391-98]
          Length = 245

 Score =  221 bits (562), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 160/241 (66%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+  ++R + +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGREVRELRHVHIHTNYLKHPEGSVLIEVGDTKVICSATVEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL  LG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEVLGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G+L    +V DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVTKIP--VKDYLAATSVGILEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  GH VEVQG+ E ATFS+     +L+ A+  I  LI+ QK+ + 
Sbjct: 179 AEDSKADVDMNVIMTGKGHFVEVQGTGEEATFSRAQLNELLDAAEHGILQLIEKQKEALG 238

Query: 240 N 240
           +
Sbjct: 239 D 239


>gi|313633649|gb|EFS00407.1| ribonuclease PH [Listeria seeligeri FSL N1-067]
          Length = 251

 Score =  221 bits (562), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 116/243 (47%), Positives = 161/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ N +R+I +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 4   MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 63

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 64  AEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQ 123

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA++A+   +  + D    F    V K  +AA S G+L  G  ++DL+Y
Sbjct: 124 ADGGTRTASITGAFIAMVMAIAKL-DAEVPFTKFPV-KDFLAATSVGVLEEGGTVLDLNY 181

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N +MT SG  VE+QG+ E  TFS+     ++ L K  IA+LI++QK+ + 
Sbjct: 182 IEDSAAQVDMNIIMTGSGAFVELQGTGEETTFSEAELAELIALGKKGIAELIEIQKETLG 241

Query: 240 NEV 242
            EV
Sbjct: 242 EEV 244


>gi|315924264|ref|ZP_07920488.1| tRNA nucleotidyltransferase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622425|gb|EFV02382.1| tRNA nucleotidyltransferase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 247

 Score =  221 bits (562), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 119/237 (50%), Positives = 158/237 (66%), Gaps = 3/237 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  N+ R   + R  +K+A GS L+  GDT ++ TA  EE VP ++R    GW+TA
Sbjct: 10  RQDGRFYNEGRPTQVMRHFTKHAHGSVLMAVGDTKVICTAMCEETVPGFMRGEGRGWVTA 69

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R KR   +G+  GRS EIQR+IGR+LR+V+D+  LG R I IDCDVIQA
Sbjct: 70  EYSMLPSATETR-KRRDRNGKTDGRSVEIQRLIGRSLRAVMDMETLGERTIRIDCDVIQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRT AITGA++AL DC+  + D S   + + + +G VAA S G+  G PI+DL Y E
Sbjct: 129 DGGTRTTAITGAFIALWDCVASLLD-SGMIEKNPI-RGFVAATSVGVWQGTPILDLCYLE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  +VD N VMTD G I+E+QG+ E   F++D F  ++ L +D IA LI +QKDV+
Sbjct: 187 DSHAEVDMNLVMTDDGRIIEIQGTGEARPFTRDEFDRLMALGQDGIAHLIAVQKDVL 243


>gi|94968644|ref|YP_590692.1| ribonuclease PH [Candidatus Koribacter versatilis Ellin345]
 gi|94550694|gb|ABF40618.1| RNAse PH [Candidatus Koribacter versatilis Ellin345]
          Length = 245

 Score =  221 bits (562), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 112/242 (46%), Positives = 159/242 (65%), Gaps = 2/242 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R   R  +Q+R +S+       AEGSCL++ G+T ++ TA++EE VP ++RN+  GW+T
Sbjct: 3   FRSDNRTPDQLRPVSIIPDYISTAEGSCLIEVGNTRVICTASIEESVPSFLRNSGKGWLT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           +EY MLPR+T  R  RE   GR  GR+ EIQR+IGR+LR+V DL+ LG R + +DCDVIQ
Sbjct: 63  SEYAMLPRATLTRTPREVSKGRASGRTHEIQRLIGRSLRAVTDLTKLGERTLFVDCDVIQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA+   +Q + + +    +S  L+ +VAA S G++ G  ++DL Y 
Sbjct: 123 ADGGTRTASITGAFVAVGLAVQKLTE-AGTLSISP-LRDYVAATSVGIVDGAVLLDLAYE 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  +VD N VMT S  +VE+QG+AE+  F  +    M++LAK  I  LI  QK  +  
Sbjct: 181 EDSRAEVDMNIVMTGSRKMVEIQGTAEQHPFDDEQLAKMMSLAKAGIEQLIVKQKAALGT 240

Query: 241 EV 242
            V
Sbjct: 241 TV 242


>gi|116872609|ref|YP_849390.1| ribonuclease PH [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|123463713|sp|A0AHX9|RNPH_LISW6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|116741487|emb|CAK20611.1| ribonuclease PH [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 248

 Score =  221 bits (562), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 113/245 (46%), Positives = 167/245 (68%), Gaps = 7/245 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++N +R+I +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 1   MRVDGREKNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMED--CSNKFQLSQVLKGHVAAISCGML-CGYPIVDL 177
           ADGGTRTA+ITGA++A+   +  +++     KF     +K  +AA S G+L  G  ++DL
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEQVPFTKFP----VKDFLAATSVGVLEEGGTVLDL 176

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +Y EDS   VD N +MT SG  VE+QG+ E ATFS+     ++ L K  I++LI++QK++
Sbjct: 177 NYIEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKEI 236

Query: 238 ISNEV 242
           + +++
Sbjct: 237 LGDKI 241


>gi|218232088|ref|YP_002369288.1| ribonuclease PH [Bacillus cereus B4264]
 gi|226736886|sp|B7HEB3|RNPH_BACC4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|218160045|gb|ACK60037.1| tRNA nucleotidyltransferase [Bacillus cereus B4264]
          Length = 245

 Score =  221 bits (562), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGREKIELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++    +V DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238

Query: 240 N 240
           +
Sbjct: 239 D 239


>gi|296393943|ref|YP_003658827.1| ribonuclease PH [Segniliparus rotundus DSM 44985]
 gi|296181090|gb|ADG97996.1| ribonuclease PH [Segniliparus rotundus DSM 44985]
          Length = 261

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 111/238 (46%), Positives = 157/238 (65%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR +++MR + +TR  +    GS LV+FG T +   A++ E VP W + T  GW+TA
Sbjct: 4   RLDGRHDDEMRPVKITRGFTSNPPGSVLVEFGQTRVFCAASVTEGVPRWRKGTGEGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V G+ GGR+QEI R+IGR+LR+ +DL+ALG   I +DCDV+QA
Sbjct: 64  EYAMLPAATATRNDRESVKGKLGGRTQEISRLIGRSLRACIDLAALGENTISVDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +   S +    Q +   +AA+S G++ G   +DL Y E
Sbjct: 124 DGGTRTAAITGAFVALSDAVTWLA-ASGRLADPQPISCGIAAVSVGVVDGRVRLDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D+  +VD N V TD+G +VEVQG+AE ATF +     +L+LA   I  L+  Q++ ++
Sbjct: 183 DARAEVDMNVVATDTGALVEVQGTAEGATFHRKTLDKLLDLAFSGIERLVAAQQEALA 240


>gi|323489951|ref|ZP_08095172.1| ribonuclease PH [Planococcus donghaensis MPA1U2]
 gi|323396247|gb|EGA89072.1| ribonuclease PH [Planococcus donghaensis MPA1U2]
          Length = 249

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 113/238 (47%), Positives = 161/238 (67%), Gaps = 7/238 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+  RQ N++R +++      + EGS L+  G T ++ TAT+E+KVP ++R    GWITA
Sbjct: 3   RIDNRQTNELRPVTVDVEYLIHPEGSVLITVGQTKVICTATIEDKVPGFLRGQGKGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T +R +REA +G+ GGR+ EIQR+IGRALR+VVDL  LG R + IDCDVIQA
Sbjct: 63  EYSMLPRATNSRNRREASAGKIGGRTMEIQRLIGRALRAVVDLEKLGERTLWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYG 180
           DGGTRTA+ITGA++A+   +  +E     F ++  L    AA S G+     PI+DL+Y 
Sbjct: 123 DGGTRTASITGAFIAMTMAIGKLE--LPDFPVTDFL----AATSVGVTAENGPILDLNYV 176

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS+ +VD N VMT +GH VE+QG+ E +TF++     +L+L +  I  LI +Q+D +
Sbjct: 177 EDSSAEVDMNLVMTGAGHFVELQGTGEESTFTRAQLNELLDLGEAGIRQLIAMQQDAL 234


>gi|319441882|ref|ZP_07991038.1| ribonuclease PH [Corynebacterium variabile DSM 44702]
          Length = 256

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 110/234 (47%), Positives = 154/234 (65%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R + +TR  +    GS LV+FG+T ++ TA++ E VP + R++  GW+TA
Sbjct: 8   RFDGRAVDELRPVRITRGFTTNPAGSVLVEFGNTRVMCTASVSEGVPRFKRDSGEGWLTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R+ REA+ G+  GR+ EI R+IGR+LR+ VDL ALG   + IDCDV+QA
Sbjct: 68  EYAMLPSATAERMPREALKGKVKGRTHEISRLIGRSLRAAVDLRALGENTVNIDCDVLQA 127

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D L  ++         + L   VAA+S G++ G P +DL Y E
Sbjct: 128 DGGTRTASITGAYVALADALAVLQ--QRGVVPGEPLLDPVAAVSVGVIDGVPCLDLPYPE 185

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  DVD N VMT  G  VE+QG+ E A FS+     +L+LA+  + DL+ LQ+
Sbjct: 186 DSRADVDMNVVMTAEGRFVEIQGTGEHAEFSRSELNELLDLAEGGLYDLVDLQR 239


>gi|59801347|ref|YP_208059.1| putative ribonuclease PH [Neisseria gonorrhoeae FA 1090]
 gi|194098405|ref|YP_002001463.1| ribonuclease PH [Neisseria gonorrhoeae NCCP11945]
 gi|239998810|ref|ZP_04718734.1| putative ribonuclease PH [Neisseria gonorrhoeae 35/02]
 gi|240014274|ref|ZP_04721187.1| putative ribonuclease PH [Neisseria gonorrhoeae DGI18]
 gi|240016710|ref|ZP_04723250.1| putative ribonuclease PH [Neisseria gonorrhoeae FA6140]
 gi|240080902|ref|ZP_04725445.1| putative ribonuclease PH [Neisseria gonorrhoeae FA19]
 gi|240112738|ref|ZP_04727228.1| putative ribonuclease PH [Neisseria gonorrhoeae MS11]
 gi|240115487|ref|ZP_04729549.1| putative ribonuclease PH [Neisseria gonorrhoeae PID18]
 gi|240117781|ref|ZP_04731843.1| putative ribonuclease PH [Neisseria gonorrhoeae PID1]
 gi|240121837|ref|ZP_04734799.1| putative ribonuclease PH [Neisseria gonorrhoeae PID24-1]
 gi|240123337|ref|ZP_04736293.1| putative ribonuclease PH [Neisseria gonorrhoeae PID332]
 gi|240125585|ref|ZP_04738471.1| putative ribonuclease PH [Neisseria gonorrhoeae SK-92-679]
 gi|240128040|ref|ZP_04740701.1| putative ribonuclease PH [Neisseria gonorrhoeae SK-93-1035]
 gi|254493595|ref|ZP_05106766.1| ribonuclease PH [Neisseria gonorrhoeae 1291]
 gi|260440703|ref|ZP_05794519.1| ribonuclease PH [Neisseria gonorrhoeae DGI2]
 gi|268594653|ref|ZP_06128820.1| ribonuclease PH [Neisseria gonorrhoeae 35/02]
 gi|268597020|ref|ZP_06131187.1| ribonuclease PH [Neisseria gonorrhoeae FA19]
 gi|268598803|ref|ZP_06132970.1| ribonuclease PH [Neisseria gonorrhoeae MS11]
 gi|268601161|ref|ZP_06135328.1| ribonuclease PH [Neisseria gonorrhoeae PID18]
 gi|268603481|ref|ZP_06137648.1| ribonuclease PH [Neisseria gonorrhoeae PID1]
 gi|268681961|ref|ZP_06148823.1| ribonuclease PH [Neisseria gonorrhoeae PID332]
 gi|268684174|ref|ZP_06151036.1| ribonuclease PH [Neisseria gonorrhoeae SK-92-679]
 gi|268686430|ref|ZP_06153292.1| ribonuclease PH [Neisseria gonorrhoeae SK-93-1035]
 gi|291044013|ref|ZP_06569729.1| ribonuclease PH [Neisseria gonorrhoeae DGI2]
 gi|293399206|ref|ZP_06643371.1| ribonuclease PH [Neisseria gonorrhoeae F62]
 gi|75432481|sp|Q5F840|RNPH_NEIG1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736920|sp|B4RL28|RNPH_NEIG2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|59718242|gb|AAW89647.1| putative ribonuclease PH [Neisseria gonorrhoeae FA 1090]
 gi|193933695|gb|ACF29519.1| putative ribonuclease PH [Neisseria gonorrhoeae NCCP11945]
 gi|226512635|gb|EEH61980.1| ribonuclease PH [Neisseria gonorrhoeae 1291]
 gi|268548042|gb|EEZ43460.1| ribonuclease PH [Neisseria gonorrhoeae 35/02]
 gi|268550808|gb|EEZ45827.1| ribonuclease PH [Neisseria gonorrhoeae FA19]
 gi|268582934|gb|EEZ47610.1| ribonuclease PH [Neisseria gonorrhoeae MS11]
 gi|268585292|gb|EEZ49968.1| ribonuclease PH [Neisseria gonorrhoeae PID18]
 gi|268587612|gb|EEZ52288.1| ribonuclease PH [Neisseria gonorrhoeae PID1]
 gi|268622245|gb|EEZ54645.1| ribonuclease PH [Neisseria gonorrhoeae PID332]
 gi|268624458|gb|EEZ56858.1| ribonuclease PH [Neisseria gonorrhoeae SK-92-679]
 gi|268626714|gb|EEZ59114.1| ribonuclease PH [Neisseria gonorrhoeae SK-93-1035]
 gi|291012476|gb|EFE04465.1| ribonuclease PH [Neisseria gonorrhoeae DGI2]
 gi|291610620|gb|EFF39730.1| ribonuclease PH [Neisseria gonorrhoeae F62]
 gi|317164098|gb|ADV07639.1| ribonuclease PH [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 242

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 113/236 (47%), Positives = 164/236 (69%), Gaps = 2/236 (0%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
           + R  + +R+I +T     + +GSCL++ G+T ++ TA+++E  P ++     GW+TAEY
Sbjct: 7   TSRAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASVDENAPPFLHGKNQGWVTAEY 66

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           GMLP ST  R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADG
Sbjct: 67  GMLPASTALRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADG 126

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
           GTRTA+ITGA+VAL   +  +   S+       +   VAA+S G++ G P++DLDY EDS
Sbjct: 127 GTRTASITGAFVALQIAVGKL--VSDGILSENPILEAVAAVSAGVVNGVPLLDLDYPEDS 184

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
             D D N VMT SG I+E+QG+AE A FS D    ++ LA+  I +L++ Q++ +S
Sbjct: 185 GCDSDVNIVMTASGKIIEIQGTAEGAPFSLDELGKLVALAQKGIGELLRYQQNALS 240


>gi|262201910|ref|YP_003273118.1| ribonuclease PH [Gordonia bronchialis DSM 43247]
 gi|262085257|gb|ACY21225.1| ribonuclease PH [Gordonia bronchialis DSM 43247]
          Length = 251

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 111/238 (46%), Positives = 158/238 (66%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R IS TR  + +  GS LV+FG T ++ TA++ + VP W R +  GW+TA
Sbjct: 4   RADGRADDELRPISFTRGFTSHPAGSVLVEFGQTRVMCTASVNDGVPPWRRGSGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V GR GGR+ EI R++GR+LR+ +DL ALG   I +DCDV+QA
Sbjct: 64  EYAMLPAATHERSSRESVKGRVGGRTHEISRLVGRSLRACIDLGALGENTIALDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +   + K    Q L   +AA+S G++ G   +DL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVTWLR-AAGKLSDPQPLSCAIAAVSVGVVDGRVRLDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VEVQG+ E ATF++    A+L++A      L + Q++V++
Sbjct: 183 DSRAEVDMNVVATDAGTLVEVQGTGEGATFARSTLDALLDVAAVGTEKLFEAQREVLA 240


>gi|254828598|ref|ZP_05233285.1| ribonuclease PH [Listeria monocytogenes FSL N3-165]
 gi|254830008|ref|ZP_05234663.1| ribonuclease PH [Listeria monocytogenes 10403S]
 gi|255025220|ref|ZP_05297206.1| ribonuclease PH [Listeria monocytogenes FSL J2-003]
 gi|258600996|gb|EEW14321.1| ribonuclease PH [Listeria monocytogenes FSL N3-165]
          Length = 248

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 112/243 (46%), Positives = 163/243 (67%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ N +R I +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 1   MRVDGRESNALRNIEITPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA++A+   +  +++     +    +K  +AA S G+L  G  ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFP--VKDFLAATSVGVLEEGGTVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N +MT SG  VE+QG+ E ATFS+     ++ L K  I++LI++QK+ + 
Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLG 238

Query: 240 NEV 242
           ++V
Sbjct: 239 DKV 241


>gi|308177068|ref|YP_003916474.1| tRNA nucleotidyltransferase [Arthrobacter arilaitensis Re117]
 gi|307744531|emb|CBT75503.1| tRNA nucleotidyltransferase [Arthrobacter arilaitensis Re117]
          Length = 244

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 114/240 (47%), Positives = 160/240 (66%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR   Q+R+I++TR  S  AEGS L++FG+T +L TA+  E VP W++    GW+T
Sbjct: 3   LRADGRGAAQLRDITITRGWSAQAEGSALIEFGNTRVLCTASFTEGVPRWLKGQGTGWVT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+  GR+ EI R+IGR+LR+VVD  ALG   I++DCDV+Q
Sbjct: 63  AEYAMLPRATNTRNSRESVKGKLSGRTHEISRLIGRSLRAVVDTKALGENTIVLDCDVLQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL + +          Q ++VL   VAAIS G++ G P++DL Y 
Sbjct: 123 ADGGTRTAAITGAYVALAEAIAWATSQGIVKQNAKVLTDSVAAISVGIIDGTPMLDLPYE 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   + D N V+T SG  VEVQG+AE   F +    A+L+LA    ++L ++Q++ + +
Sbjct: 183 EDVRAETDMNVVVTGSGDFVEVQGTAEGVPFKRAELDALLDLALGGTSELAEIQRETLGS 242


>gi|323359606|ref|YP_004226002.1| RNase PH [Microbacterium testaceum StLB037]
 gi|323275977|dbj|BAJ76122.1| RNase PH [Microbacterium testaceum StLB037]
          Length = 241

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 113/233 (48%), Positives = 153/233 (65%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R +++ R  S +AEGS L+ FG T +L TA+    VP W+     GW+TA
Sbjct: 3   RKDGRTTDQLRPVTIERGWSAHAEGSALITFGGTKVLCTASFTNGVPRWLTGKGKGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T +R  RE++ G+ GGR+ EI R+IGRALR+VVD  ALG   I+IDCDV+QA
Sbjct: 63  EYAMLPRATNSRNDRESIKGKVGGRTHEISRLIGRALRAVVDTKALGENTIVIDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +    +     Q S+VL   V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAIAWGREKKFIAQRSEVLIDSVSAVSVGIIDGEPMLDLAYVE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D   + D N V+T  G  VEVQG+AE A F +     +L+LA +  A+L  +Q
Sbjct: 183 DVRAETDMNVVVTGRGLFVEVQGTAEGAPFDKAELDRLLDLAVNGCAELRGIQ 235


>gi|229163445|ref|ZP_04291396.1| Ribonuclease PH [Bacillus cereus R309803]
 gi|228620014|gb|EEK76889.1| Ribonuclease PH [Bacillus cereus R309803]
          Length = 245

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++    +V DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 179 IEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238

Query: 240 N 240
           +
Sbjct: 239 D 239


>gi|224499091|ref|ZP_03667440.1| ribonuclease PH [Listeria monocytogenes Finland 1988]
          Length = 248

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 112/243 (46%), Positives = 163/243 (67%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ N +R I +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 1   MRVDGRESNALRNIEITPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA++A+   +  +++     +    +K  +AA S G+L  G  ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFP--VKDFLAATSVGVLDEGGTVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N +MT SG  VE+QG+ E ATFS+     ++ L K  I++LI++QK+ + 
Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLG 238

Query: 240 NEV 242
           ++V
Sbjct: 239 DKV 241


>gi|254520650|ref|ZP_05132706.1| ribonuclease Ph [Clostridium sp. 7_2_43FAA]
 gi|226914399|gb|EEH99600.1| ribonuclease Ph [Clostridium sp. 7_2_43FAA]
          Length = 248

 Score =  220 bits (560), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 116/238 (48%), Positives = 161/238 (67%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+  Q+R   +TR  +KYAEGS L++ GDT ++ TA++E+KVP +++    GWIT
Sbjct: 1   MRIDGRKNEQVRIAKITRGYTKYAEGSVLIEVGDTKVICTASIEDKVPPFLKGQGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRSTG R  R+    +  GR+ EIQR+IGRALRSV+DL ALG + I IDCDVIQ
Sbjct: 61  AEYNMLPRSTGTRKVRDIARLKVDGRTMEIQRLIGRALRSVMDLKALGEKTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITGA+VAL D +  +      F++  + K  V+A S G+L    I+DL Y 
Sbjct: 121 ADGGTRTTSITGAFVALVDAVNKLHK-EKPFEVYPIRK-FVSATSVGILNDEKILDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS   VD N + TD G  +E+QG+ E + FS+D    +L+LA+  I  ++++QKD +
Sbjct: 179 EDSNAKVDMNVIATDEGEFIEIQGTGEESPFSRDDLNDLLDLAQKGIKQMVQIQKDAL 236


>gi|229175161|ref|ZP_04302677.1| Ribonuclease PH [Bacillus cereus MM3]
 gi|228608297|gb|EEK65603.1| Ribonuclease PH [Bacillus cereus MM3]
          Length = 245

 Score =  220 bits (560), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 160/241 (66%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+  ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGRERTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++    +V DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 179 VEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238

Query: 240 N 240
           +
Sbjct: 239 D 239


>gi|322436088|ref|YP_004218300.1| ribonuclease PH [Acidobacterium sp. MP5ACTX9]
 gi|321163815|gb|ADW69520.1| ribonuclease PH [Acidobacterium sp. MP5ACTX9]
          Length = 245

 Score =  220 bits (560), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 115/239 (48%), Positives = 153/239 (64%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R   R  NQ+R   +T       EGS L++ G+T +L  AT+E  VP W+RN+  GW+T
Sbjct: 6   FRPDNRTANQLRPTRITPGYVSTPEGSVLIEVGNTRVLCNATIETGVPGWMRNSGKGWVT 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+ GGR+ EIQR+IGR+LR +VD+ ALG R II+DCDV+Q
Sbjct: 66  AEYGMLPRATLTRSPREAEKGKIGGRTHEIQRLIGRSLRGIVDMRALGERTIILDCDVLQ 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL   L  +         +  LK  +AA S G++ G  ++DL Y 
Sbjct: 126 ADGGTRTAAITGASVALAIALGKLVQAGTLK--ASPLKQMIAATSVGIVDGNTLLDLAYE 183

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD N VM  SG +VE Q +AE+ ++S+     ML+LA+  I DL+ LQ+  ++
Sbjct: 184 EDSRATVDMNVVMLASGGLVETQATAEKDSYSRQQLTEMLDLAEAGIRDLLILQQTALT 242


>gi|229087047|ref|ZP_04219199.1| Ribonuclease PH [Bacillus cereus Rock3-44]
 gi|228696240|gb|EEL49073.1| Ribonuclease PH [Bacillus cereus Rock3-44]
          Length = 245

 Score =  220 bits (560), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 160/241 (66%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+  ++R I L     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGREAAELRHIHLHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++    +V DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGIVEDQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  L++ QK+ + 
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAELNELLDAAEHGILQLVEKQKEALG 238

Query: 240 N 240
           +
Sbjct: 239 D 239


>gi|16803278|ref|NP_464763.1| ribonuclease PH [Listeria monocytogenes EGD-e]
 gi|46907457|ref|YP_013846.1| ribonuclease PH [Listeria monocytogenes serotype 4b str. F2365]
 gi|47093490|ref|ZP_00231252.1| ribonuclease PH [Listeria monocytogenes str. 4b H7858]
 gi|217964696|ref|YP_002350374.1| ribonuclease PH [Listeria monocytogenes HCC23]
 gi|224503807|ref|ZP_03672114.1| ribonuclease PH [Listeria monocytogenes FSL R2-561]
 gi|226223838|ref|YP_002757945.1| ribonuclease PH [Listeria monocytogenes Clip81459]
 gi|254823508|ref|ZP_05228509.1| ribonuclease PH [Listeria monocytogenes FSL J1-194]
 gi|254932884|ref|ZP_05266243.1| ribonuclease PH [Listeria monocytogenes HPB2262]
 gi|284801558|ref|YP_003413423.1| ribonuclease PH [Listeria monocytogenes 08-5578]
 gi|284994700|ref|YP_003416468.1| ribonuclease PH [Listeria monocytogenes 08-5923]
 gi|290893280|ref|ZP_06556266.1| ribonuclease PH [Listeria monocytogenes FSL J2-071]
 gi|21759401|sp|Q8Y7N6|RNPH_LISMO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61215964|sp|Q720J1|RNPH_LISMF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808591|sp|B8DHZ4|RNPH_LISMH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|259494123|sp|C1L2E3|RNPH_LISMC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|16410654|emb|CAC99316.1| lmo1238 [Listeria monocytogenes EGD-e]
 gi|46880725|gb|AAT04023.1| ribonuclease PH [Listeria monocytogenes serotype 4b str. F2365]
 gi|47018108|gb|EAL08879.1| ribonuclease PH [Listeria monocytogenes str. 4b H7858]
 gi|217333966|gb|ACK39760.1| ribonuclease PH [Listeria monocytogenes HCC23]
 gi|225876300|emb|CAS05009.1| Putative ribonuclease PH [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|284057120|gb|ADB68061.1| ribonuclease PH [Listeria monocytogenes 08-5578]
 gi|284060167|gb|ADB71106.1| ribonuclease PH [Listeria monocytogenes 08-5923]
 gi|290557088|gb|EFD90616.1| ribonuclease PH [Listeria monocytogenes FSL J2-071]
 gi|293584438|gb|EFF96470.1| ribonuclease PH [Listeria monocytogenes HPB2262]
 gi|293592728|gb|EFG00489.1| ribonuclease PH [Listeria monocytogenes FSL J1-194]
 gi|307570743|emb|CAR83922.1| ribonuclease PH [Listeria monocytogenes L99]
 gi|313609161|gb|EFR84844.1| ribonuclease PH [Listeria monocytogenes FSL F2-208]
 gi|328475256|gb|EGF46037.1| ribonuclease PH [Listeria monocytogenes 220]
 gi|332311624|gb|EGJ24719.1| Ribonuclease PH [Listeria monocytogenes str. Scott A]
          Length = 248

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 112/243 (46%), Positives = 163/243 (67%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ N +R I +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 1   MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA++A+   +  +++     +    +K  +AA S G+L  G  ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFP--VKDFLAATSVGVLEEGGTVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N +MT SG  VE+QG+ E ATFS+     ++ L K  I++LI++QK+ + 
Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLG 238

Query: 240 NEV 242
           ++V
Sbjct: 239 DKV 241


>gi|291286002|ref|YP_003502818.1| ribonuclease PH [Denitrovibrio acetiphilus DSM 12809]
 gi|290883162|gb|ADD66862.1| ribonuclease PH [Denitrovibrio acetiphilus DSM 12809]
          Length = 236

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 109/233 (46%), Positives = 152/233 (65%), Gaps = 2/233 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R+ + +R++ + +    + EGS LV FGDT ++  A++ E VP ++R++  GW+TAEY M
Sbjct: 5   RKNDSLRKVEIIKDYISHPEGSVLVAFGDTKVICNASVSEGVPPFLRDSGTGWVTAEYAM 64

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LPR+T  R +RE+  G+Q GRSQEI R+IGR+LR+ VD   LG   + IDCDVIQADGGT
Sbjct: 65  LPRATHTRNQRESKRGKQDGRSQEISRLIGRSLRAAVDFEKLGENTVTIDCDVIQADGGT 124

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTAAITG + AL+   + M            + G V+AIS G++ G P++DL+Y EDS  
Sbjct: 125 RTAAITGGFCALYMACEWM--IKQGMIAENPVTGMVSAISVGIVMGEPMLDLEYAEDSIA 182

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DVD N V+ D+  IVE+QGSAE+  F +D    ML+L    I +L  +QK VI
Sbjct: 183 DVDMNLVVKDNAEIVEIQGSAEKVAFDRDLLNKMLDLGFKGIKELTDIQKQVI 235


>gi|56964417|ref|YP_176148.1| ribonuclease PH [Bacillus clausii KSM-K16]
 gi|61215808|sp|Q5WEM3|RNPH_BACSK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|56910660|dbj|BAD65187.1| ribonuclease PH [Bacillus clausii KSM-K16]
          Length = 250

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 116/239 (48%), Positives = 156/239 (65%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR++NQ+RE+ +    +K+AEGS L+  GDT ++ TA++E +VP ++R    GW+ 
Sbjct: 1   MRQDGRKQNQLREVEIIPHFTKHAEGSVLISVGDTKVICTASIENRVPPFLRGQNKGWLA 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+TG R  REA  G+  GR+ EIQR+IGRALR+VVDL  LG + I IDCDVIQ
Sbjct: 61  AEYSMLPRATGQRTIREAAKGKLSGRTMEIQRLIGRALRAVVDLEKLGEKTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VAL   +Q     + K   +  +   +AAIS G+L     + DL Y
Sbjct: 121 ADGGTRTASITGAYVALVLAVQKA--FAEKTISAWPITDFLAAISVGILPEEGAVCDLCY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N V T SG  VEVQGS E A +++     +L+LA + I  LI +Q+  +
Sbjct: 179 SEDSQAKVDMNIVQTGSGDFVEVQGSGEEAVYTRSELNELLDLAAEGIDQLIHIQRPFL 237


>gi|119715559|ref|YP_922524.1| ribonuclease PH [Nocardioides sp. JS614]
 gi|166228299|sp|A1SGA2|RNPH_NOCSJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|119536220|gb|ABL80837.1| RNAse PH [Nocardioides sp. JS614]
          Length = 242

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 118/238 (49%), Positives = 158/238 (66%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R I++TR    +A GS LV+FG T +L  A+  E VP W + +  GW+TA
Sbjct: 6   REDGRADDELRPITITRHWLDHAAGSVLVEFGRTRVLCAASAAEGVPRWRKGSGLGWVTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R  RE+V GR GGR+ EI R+IGR+LR+++D  ALG   I +DCDV+QA
Sbjct: 66  EYAMLPASTNTRSDRESVKGRIGGRTHEISRLIGRSLRAIIDYKALGENTIQLDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D ++H+   S      + L G VAA+S G++ G P +DL Y E
Sbjct: 126 DGGTRTAAITGAYVALADAVEHLR--STGALTGEPLTGSVAAVSVGIIDGVPRLDLPYVE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   + D N VMT SG  VEVQG+AE A F +    A+L LA+   ADL +LQ++ +S
Sbjct: 184 DVRAETDMNVVMTGSGKFVEVQGTAEGAAFDRAELDALLALAEKGCADLTRLQQEALS 241


>gi|319651759|ref|ZP_08005885.1| ribonuclease PH [Bacillus sp. 2_A_57_CT2]
 gi|317396578|gb|EFV77290.1| ribonuclease PH [Bacillus sp. 2_A_57_CT2]
          Length = 256

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 115/243 (47%), Positives = 158/243 (65%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+  Q+R I +     K+ EGS L+  GDT ++ TA+++E+VP ++R    GWIT
Sbjct: 1   MRADGREPKQLRPIHIESDYLKHPEGSVLITVGDTKVICTASIDERVPPFMRGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + +DCDVIQ
Sbjct: 61  AEYSMLPRATEQRNIRESAKGKISGRTMEIQRLIGRALRAVVDLDALGERTVWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDY 179
           ADGGTRTA+ITGA+VA+   +  +   S+K      +   +AA S G+L      VDL+Y
Sbjct: 121 ADGGTRTASITGAFVAMSQAMDKL--YSSKKLAHYPINDFLAATSVGILKNKQAAVDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS+ +VD N VMT SG  VE+QG+ E ATFS      ML  A++ I++L + QK  + 
Sbjct: 179 IEDSSAEVDMNVVMTGSGEFVELQGTGEEATFSYTQLQEMLGAAQEGISELFEFQKAALG 238

Query: 240 NEV 242
            ++
Sbjct: 239 EKI 241


>gi|306819763|ref|ZP_07453420.1| ribonuclease PH/Ham1 protein [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304552198|gb|EFM40132.1| ribonuclease PH/Ham1 protein [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 459

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/237 (45%), Positives = 159/237 (67%), Gaps = 2/237 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  N+MR I +T+  + YA+GS L++FG+T ++ TA++EEKVP +++N+  GWI+AEY M
Sbjct: 15  RANNEMRRIRITKNYAGYADGSVLIEFGNTKVICTASVEEKVPPFLKNSGTGWISAEYSM 74

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST  R  R++  G+  GRSQEIQR+IGR+LR+ VD + LG R I IDCDVIQADGGT
Sbjct: 75  LPGSTKQRKVRDSTRGKIDGRSQEIQRLIGRSLRNAVDFTKLGERTIWIDCDVIQADGGT 134

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RT +I GA++A+   ++ + D   K      +   ++AIS G++ G  ++DL Y +DS  
Sbjct: 135 RTTSINGAFIAMALAVKKLYD--RKIISHFPIDSFISAISVGIVRGENVLDLCYEQDSNA 192

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            VD N VMT  G  VE+QG+ E+  FS+D    +L LA+     ++ LQK+++ +E+
Sbjct: 193 QVDMNIVMTSKGEFVEIQGTGEQTPFSRDSLNDLLTLAEKANEKIVNLQKEILGDEI 249


>gi|270308459|ref|YP_003330517.1| ribonuclease PH [Dehalococcoides sp. VS]
 gi|270154351|gb|ACZ62189.1| ribonuclease PH [Dehalococcoides sp. VS]
          Length = 239

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 110/236 (46%), Positives = 153/236 (64%), Gaps = 2/236 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R I++T     +AEGS L++ G T ++ + ++E+KVP ++RN+  GW+TA
Sbjct: 3   RGDGRNFNQLRPITITPGFQSFAEGSVLIEQGKTRVICSVSMEDKVPQFLRNSGTGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R +R++ +G+  GRSQEIQR+IGR+LRS VDL+ALG R  IIDCDVIQA
Sbjct: 63  EYSMLPRSTVTRTQRDSSAGKISGRSQEIQRLIGRSLRSCVDLTALGERSFIIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTA+ITGA++AL+   + M D     ++       VAA+S  +  G  ++D  Y E
Sbjct: 123 DAGTRTASITGAYIALYLAFKKMVDMGILSKMP--FTSQVAAVSVSIFKGNIVLDPCYDE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           D   +VD N VM D    VE+QG+AE  TFS+D    +L L +  I  L  +Q  +
Sbjct: 181 DFQAEVDFNLVMNDRAEFVEIQGTAEGKTFSRDTLDQVLKLGESGIKQLFDIQNSI 236


>gi|297571668|ref|YP_003697442.1| ribonuclease PH [Arcanobacterium haemolyticum DSM 20595]
 gi|296932015|gb|ADH92823.1| ribonuclease PH [Arcanobacterium haemolyticum DSM 20595]
          Length = 246

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 112/243 (46%), Positives = 155/243 (63%), Gaps = 10/243 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  N++R + +TR      EGS LV+FG+T +L  A+  E VP W +++  GW+T 
Sbjct: 6   RADGRATNELRPVKITRNFLDAGEGSVLVEFGNTKVLCVASFTEGVPRWRKDSGLGWVTG 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R +RE+V G+  GR+QEI R++GRALR+VVD+SALG   I++DCDV+QA
Sbjct: 66  EYSMLPRATSTRNQRESVKGKVSGRTQEISRLVGRALRAVVDMSALGDNTIVLDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQ------HMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
           DGGTRTA+ITGA+VAL D +       H++  + K     VL+  VAAIS G++ G P +
Sbjct: 126 DGGTRTASITGAYVALADAVAWGIERGHIKPRAGK----PVLRDSVAAISVGIIDGVPCL 181

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DL Y ED   + D N VMT +G  +EVQG+AE   F +     +L+LA     +L   Q 
Sbjct: 182 DLPYEEDVRAETDMNVVMTGTGKFIEVQGTAEGEPFDRTELGQLLDLATAGCQELTSKQN 241

Query: 236 DVI 238
           D +
Sbjct: 242 DAL 244


>gi|220928777|ref|YP_002505686.1| ribonuclease PH [Clostridium cellulolyticum H10]
 gi|254808583|sp|B8I1A8|RNPH_CLOCE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|219999105|gb|ACL75706.1| ribonuclease PH [Clostridium cellulolyticum H10]
          Length = 240

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 110/239 (46%), Positives = 163/239 (68%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR   Q+R + + R   K+AEGS L++ GDT ++ TA++EE++P + +++  GW+T
Sbjct: 2   LRHDGRSNTQLRSVRILRNYIKHAEGSVLIEVGDTKVICTASVEERIPPFKKDSGEGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +R+    +  GRS EIQR+IGR+LR++VDL  LG R I IDCDVIQ
Sbjct: 62  AEYSMLPRATAVRNQRDISKLKLNGRSSEIQRLIGRSLRTIVDLKLLGERTITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITG++VAL D  + +     K  +S++ + G VAA S G++ G  ++DL Y
Sbjct: 122 ADGGTRTASITGSYVALVDACRTL---VKKGLISKMPVTGTVAATSVGIVNGEELLDLCY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS  +VD N + TD G  +E+Q + E+++FS+     +LNLA+  I +LIK Q +V+
Sbjct: 179 IEDSNAEVDMNVIKTDKGEFIEIQATGEKSSFSKKQLDQLLNLAESGIHELIKAQNEVL 237


>gi|289549062|ref|YP_003474050.1| ribonuclease PH [Thermocrinis albus DSM 14484]
 gi|289182679|gb|ADC89923.1| ribonuclease PH [Thermocrinis albus DSM 14484]
          Length = 255

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 114/235 (48%), Positives = 157/235 (66%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+ N++R+I +TR   K+ EGS LV+FGDT ++ T +++E VP +++    GWIT
Sbjct: 1   MRSDGRKPNELRKIRITRDYLKHPEGSVLVEFGDTKVVCTVSVQESVPPFLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V GR GGR+ EIQRMIGRA+R+ +DL+ +G R   IDCDV+Q
Sbjct: 61  AEYSMLPRATQTRNIRESVQGRVGGRTHEIQRMIGRAMRTALDLTKVGERTFWIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D +  +   +     +  +K  VAA+S G++    ++DL++ 
Sbjct: 121 ADGGTRTAAITGAFVALADAVIKL--YTEGVLTTTPIKDFVAAVSVGIVDDQILLDLNFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS   VD N V T SG I E+    E  TFS++    MLNLA   I  L++LQ+
Sbjct: 179 EDSRAKVDMNVVATGSGMISEIHAMGEEHTFSREDMDKMLNLALAGIRQLVELQR 233


>gi|308235684|ref|ZP_07666421.1| ribonuclease PH [Gardnerella vaginalis ATCC 14018]
 gi|311114281|ref|YP_003985502.1| tRNA nucleotidyltransferase [Gardnerella vaginalis ATCC 14019]
 gi|310945775|gb|ADP38479.1| tRNA nucleotidyltransferase [Gardnerella vaginalis ATCC 14019]
          Length = 254

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 110/239 (46%), Positives = 153/239 (64%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +++R + +TR  +   EGS L++ G+T ++ TAT    VP W R+T  GW+T
Sbjct: 14  IRFDGRDVDELRPVKITRNFTNVPEGSVLIECGNTRVMCTATFTIGVPRWRRDTGLGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR V+D+ A+G   I IDCDV+Q
Sbjct: 74  AEYSMLPRATAERTDRESVKGKIGGRTHEISRLIGRCLRGVIDMKAMGECLIQIDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D L   E   +      VLK  V+A+S G++ G P++DL Y 
Sbjct: 134 ADGGTRTASITGAYVALVDALNWAEKHKHIRSAKNVLKDSVSAVSVGVINGTPMLDLPYV 193

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N  MT SG+ +E+QG+AE   F++D    +L+LA     +L   Q+  +S
Sbjct: 194 EDSQAMTDMNVAMTGSGNFIEIQGTAEHRPFNRDELNVLLDLAAKGNRELQAAQRAALS 252


>gi|315282015|ref|ZP_07870521.1| ribonuclease PH [Listeria marthii FSL S4-120]
 gi|313614342|gb|EFR87980.1| ribonuclease PH [Listeria marthii FSL S4-120]
          Length = 248

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 114/245 (46%), Positives = 163/245 (66%), Gaps = 7/245 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+ N +R I +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 1   MRFDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCS--NKFQLSQVLKGHVAAISCGML-CGYPIVDL 177
           ADGGTRTA+ITGA++A+   +  +++ +   KF     +K  +AA S G+L  G  ++DL
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEETPFTKFP----VKDFLAATSVGVLEEGGTVLDL 176

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +Y EDS   VD N +MT SG  VE+QG+ E ATFS+     ++ L K  I++LI++QK+ 
Sbjct: 177 NYVEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGISELIEIQKET 236

Query: 238 ISNEV 242
           +  +V
Sbjct: 237 LGEKV 241


>gi|254852893|ref|ZP_05242241.1| ribonuclease PH [Listeria monocytogenes FSL R2-503]
 gi|254993151|ref|ZP_05275341.1| ribonuclease PH [Listeria monocytogenes FSL J2-064]
 gi|300764387|ref|ZP_07074381.1| ribonuclease PH [Listeria monocytogenes FSL N1-017]
 gi|258606228|gb|EEW18836.1| ribonuclease PH [Listeria monocytogenes FSL R2-503]
 gi|300515039|gb|EFK42092.1| ribonuclease PH [Listeria monocytogenes FSL N1-017]
          Length = 248

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 112/243 (46%), Positives = 163/243 (67%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ N +R I +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 1   MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA++A+   +  +++     +    +K  +AA S G+L  G  ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFP--VKDFLAATSVGVLEEGGTVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N +MT SG  VE+QG+ E ATFS+     ++ L K  I++LI++QK+ + 
Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIVLGKKGISELIEIQKETLG 238

Query: 240 NEV 242
           ++V
Sbjct: 239 DKV 241


>gi|310778905|ref|YP_003967238.1| ribonuclease PH [Ilyobacter polytropus DSM 2926]
 gi|309748228|gb|ADO82890.1| ribonuclease PH [Ilyobacter polytropus DSM 2926]
          Length = 245

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/238 (44%), Positives = 162/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R+ +Q+R+I +    + YAEGS L++ G+T ++ TA++ ++VP ++RN   GW+T
Sbjct: 5   LRDDNRKLDQIRDIKIKPNFTIYAEGSVLIEMGNTKVICTASISDRVPPFLRNQGRGWLT 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  REAV G+  GR+ EIQR+IGR+LR+ +DL  +G + I +DCDVIQ
Sbjct: 65  AEYSMLPRATEDRNMREAVKGKLSGRTMEIQRLIGRSLRACIDLEKIGEKTITVDCDVIQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG ++AL   ++ +       +    L  +VAAIS G++ G P++DL Y 
Sbjct: 125 ADGGTRTASITGGYMALALAVKKLLKKDKLKE--NPLIANVAAISAGIVGGQPMLDLKYT 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDST +VD N +M   G  VEVQG+ E AT+++     ML+LA+  I +L++LQ  ++
Sbjct: 183 EDSTAEVDMNVIMNSKGEFVEVQGTGEEATYTRRELNEMLDLAEKGIMELVELQNKIV 240


>gi|294787314|ref|ZP_06752567.1| tRNA nucleotidyltransferase [Parascardovia denticolens F0305]
 gi|294484670|gb|EFG32305.1| tRNA nucleotidyltransferase [Parascardovia denticolens F0305]
          Length = 260

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/242 (44%), Positives = 157/242 (64%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q+R + +TR  ++  EGS L++ G+T +L TAT  + VP W R++  GW+T
Sbjct: 17  IRADGRAVDQLRPVKITRGWTQAPEGSVLIECGNTRVLCTATFTQGVPRWRRDSGLGWVT 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T +R  RE+V G+ GGR+ EI R+IGR LR +VD+ ALG  QI IDCDV+Q
Sbjct: 77  AEYAMIPRATADRTDRESVKGKVGGRTHEISRLIGRVLRGIVDMGALGENQIQIDCDVLQ 136

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA+VAL D +   +         +VL   V+A+S G++ G P++DL Y 
Sbjct: 137 ADGGTRTASVTGAYVALADAVSWAKRNKKIKAGKKVLTDQVSAVSVGIINGTPMLDLPYV 196

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS    D N  MT SG+ +E+QG+AE   FS+     +L+LA+    +L  +Q + +  
Sbjct: 197 EDSQAMTDMNVAMTGSGNFIEIQGTAEHRPFSRAELNTLLDLAEKGNRELQGMQAEALEQ 256

Query: 241 EV 242
            +
Sbjct: 257 AI 258


>gi|25028957|ref|NP_739011.1| ribonuclease PH [Corynebacterium efficiens YS-314]
 gi|259508022|ref|ZP_05750922.1| tRNA nucleotidyltransferase [Corynebacterium efficiens YS-314]
 gi|61216064|sp|Q8FMU8|RNPH_COREF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|23494244|dbj|BAC19211.1| putative ribonuclease [Corynebacterium efficiens YS-314]
 gi|259164363|gb|EEW48917.1| tRNA nucleotidyltransferase [Corynebacterium efficiens YS-314]
          Length = 245

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 109/234 (46%), Positives = 156/234 (66%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++QMR + +TR  +    GS L++FG+T ++ TA++E  VP + R++  GW+TA
Sbjct: 9   RADGRAQDQMRTVKITRGFTTNPAGSVLIEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE+++G+  GR+ EI R+IGR+LR+ VDLS LG   I IDCDV+QA
Sbjct: 69  EYAMLPAATAERNRRESMAGKVKGRTHEISRLIGRSLRAAVDLSQLGENTIAIDCDVLQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D ++ +++          L   VAA+S G++ G P +DL Y E
Sbjct: 129 DGGTRTAAITGAYVALADAIRVLKE--QGVVPGDPLLPPVAAVSVGLIDGQPCLDLPYEE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D   DVD N VMT+SG  VE+QG+ E  TF++     ML++A+    +L+  QK
Sbjct: 187 DVRADVDMNVVMTESGEFVEIQGTGEETTFTRAQLNEMLDIAEKGCRELVHAQK 240


>gi|315227127|ref|ZP_07868914.1| tRNA nucleotidyltransferase [Parascardovia denticolens DSM 10105]
 gi|315119577|gb|EFT82710.1| tRNA nucleotidyltransferase [Parascardovia denticolens DSM 10105]
          Length = 263

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 107/242 (44%), Positives = 157/242 (64%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q+R + +TR  ++  EGS L++ G+T +L TAT  + VP W R++  GW+T
Sbjct: 20  IRADGRAVDQLRPVKITRGWTQAPEGSVLIECGNTRVLCTATFTQGVPRWRRDSGLGWVT 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T +R  RE+V G+ GGR+ EI R+IGR LR +VD+ ALG  QI IDCDV+Q
Sbjct: 80  AEYAMIPRATADRTDRESVKGKVGGRTHEISRLIGRVLRGIVDMGALGENQIQIDCDVLQ 139

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA+VAL D +   +         +VL   V+A+S G++ G P++DL Y 
Sbjct: 140 ADGGTRTASVTGAYVALADAVSWAKRNKKIKAGKKVLTDQVSAVSVGIINGTPMLDLPYV 199

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS    D N  MT SG+ +E+QG+AE   FS+     +L+LA+    +L  +Q + +  
Sbjct: 200 EDSQAMTDMNVAMTGSGNFIEIQGTAEHRPFSRAELNTLLDLAEKGNRELQGMQAEALEQ 259

Query: 241 EV 242
            +
Sbjct: 260 AI 261


>gi|284043327|ref|YP_003393667.1| ribonuclease PH [Conexibacter woesei DSM 14684]
 gi|283947548|gb|ADB50292.1| ribonuclease PH [Conexibacter woesei DSM 14684]
          Length = 245

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 112/229 (48%), Positives = 148/229 (64%), Gaps = 2/229 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR    +R +S      + A GS L+  G+T ++ TA++EE VP W+     GW+TA
Sbjct: 5   RSYGRTAEGLRPVSFEPGFVRSATGSALIAIGETRVICTASVEESVPRWMTGRGTGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLP STG R  R+   GR  GR+ EIQR+IGR+LR VVD SALG R + +DCDV+QA
Sbjct: 65  EYGMLPASTGQRKARDVTKGRADGRTVEIQRLIGRSLRGVVDFSALGERTVYVDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+ITG +VAL    + +   ++       L G VAA+S G++ G P++DLDY E
Sbjct: 125 DGGTRCASITGGFVALQLACERL--VADGLLERLPLTGSVAAVSAGIVDGVPLLDLDYPE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           DST +VDAN VMT  G +VEVQ +AER   S+ H   +L LA+  IA+L
Sbjct: 183 DSTAEVDANVVMTGEGGLVEVQATAERTPLSRAHLDDLLALAERGIAEL 231


>gi|189184292|ref|YP_001938077.1| ribonuclease PH [Orientia tsutsugamushi str. Ikeda]
 gi|189181063|dbj|BAG40843.1| ribonuclease PH [Orientia tsutsugamushi str. Ikeda]
          Length = 251

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 116/238 (48%), Positives = 158/238 (66%), Gaps = 7/238 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG-WI 59
           MRL  R++++MR IS+       ++GSCL+K G+TH++ +AT+EE +P++++N K G W+
Sbjct: 1   MRLCSRKDSEMRPISIELGTMLNSKGSCLIKIGNTHVICSATVEESLPLFLKNKKQGGWV 60

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           TAEY MLP S+  RVKRE + G+  GR+QEIQR+I RA+R+ VDL  LG RQI+IDCDVI
Sbjct: 61  TAEYSMLPGSSLQRVKREGIQGK-SGRTQEIQRLISRAMRAAVDLKLLGERQILIDCDVI 119

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
            ADGGTR A+ITG +VA+  CL   +    K      +   VAAISCG+  G  IVDLDY
Sbjct: 120 NADGGTRAASITGGYVAM--CLAVNKLMQEKNLAVYPILYQVAAISCGISNGRVIVDLDY 177

Query: 180 GEDSTIDVDANFVMTDSG---HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            EDS  +VDANFV   +G    IVE+Q +AE+  F  +    ML LA+  I  +  +Q
Sbjct: 178 QEDSCAEVDANFVFRRAGTIIEIVEIQVAAEKKAFVDEQVIQMLKLAQKAINHIFDIQ 235


>gi|332978052|gb|EGK14790.1| tRNA nucleotidyltransferase [Desmospora sp. 8437]
          Length = 289

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 115/239 (48%), Positives = 158/239 (66%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GRQ N++R++ +     K+AEGS L+  GDT ++ TA++EE+VP ++R +  GW+T
Sbjct: 31  LRVDGRQYNELRKVEMISDYIKHAEGSVLMCVGDTKVICTASVEERVPPFLRGSGKGWVT 90

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  RE+  G+ GGR+ EIQR+IGR+LRSV+ L  LG R I +DCDVIQ
Sbjct: 91  AEYSMLPRATQSRTIRESSKGKVGGRTMEIQRLIGRSLRSVIQLDRLGERTIWLDCDVIQ 150

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA+VA     Q +        L  V +   +AA S G++ G P +DL Y
Sbjct: 151 ADGGTRTASITGAFVA---AAQAIHGLVKSGALDSVPITDFLAATSVGIVDGQPCLDLCY 207

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT SG  VE+QG+ E + F+ +    +L LA      LI+LQKDV+
Sbjct: 208 EEDSKAKVDMNVVMTGSGKYVEIQGTGEESPFTPEELHQLLALAGHGTEQLIRLQKDVL 266


>gi|110801547|ref|YP_699516.1| ribonuclease PH [Clostridium perfringens SM101]
 gi|123145921|sp|Q0SQU1|RNPH_CLOPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|110682048|gb|ABG85418.1| tRNA nucleotidyltransferase [Clostridium perfringens SM101]
          Length = 248

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 109/241 (45%), Positives = 160/241 (66%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR++ Q+R + +TR  +KYAEGS L++ GDT +L TA++EEKVP +++ +  GWIT
Sbjct: 1   MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASIEEKVPPFLKGSGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PRST +R +R+    +  GR+ EIQR+IGRALRS VD+ ALG + I IDCDV+Q
Sbjct: 61  AEYNMIPRSTQSRKQRDINKLKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG++VAL D +  +      F +  + +  V+A+S G++    ++DL Y 
Sbjct: 121 ADGGTRTTSITGSFVALVDAVNKLHQ-KKPFNVYPI-RHFVSAVSIGIVGEEKVLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED    VD N VM + G  +E+QG+ E   FS+     +LNLA+     +I+ QK+ +  
Sbjct: 179 EDHVAKVDMNVVMIEEGEFIEIQGTGEIGPFSRKELDELLNLAEKGAKQMIQAQKNALKT 238

Query: 241 E 241
           +
Sbjct: 239 D 239


>gi|47097379|ref|ZP_00234931.1| ribonuclease PH [Listeria monocytogenes str. 1/2a F6854]
 gi|254898601|ref|ZP_05258525.1| ribonuclease PH [Listeria monocytogenes J0161]
 gi|254911909|ref|ZP_05261921.1| ribonuclease PH [Listeria monocytogenes J2818]
 gi|254936235|ref|ZP_05267932.1| ribonuclease PH [Listeria monocytogenes F6900]
 gi|47014251|gb|EAL05232.1| ribonuclease PH [Listeria monocytogenes str. 1/2a F6854]
 gi|258608825|gb|EEW21433.1| ribonuclease PH [Listeria monocytogenes F6900]
 gi|293589869|gb|EFF98203.1| ribonuclease PH [Listeria monocytogenes J2818]
          Length = 248

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ N +R I +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 1   MRVDGRESNALRNIEITPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA++A+   +  +++     +    +K  +AA S G+L  G  ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFP--VKDFLAATSVGVLEEGGTVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N +MT SG  VE+QG+ E ATFS+     ++ L K  I +LI++QK+ + 
Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGICELIEIQKETLG 238

Query: 240 NEV 242
           ++V
Sbjct: 239 DKV 241


>gi|257452055|ref|ZP_05617354.1| ribonuclease PH [Fusobacterium sp. 3_1_5R]
 gi|317058603|ref|ZP_07923088.1| ribonuclease Ph [Fusobacterium sp. 3_1_5R]
 gi|313684279|gb|EFS21114.1| ribonuclease Ph [Fusobacterium sp. 3_1_5R]
          Length = 249

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 116/237 (48%), Positives = 162/237 (68%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ENQ+REI +TR  + +AEGS L++ G+T ++ TA++ EKVP +I+NT  GW+TA
Sbjct: 3   RIDGRKENQLREIKITRDFNIHAEGSVLIESGNTKVICTASVSEKVPSFIKNTGKGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY M+PR+TG R +REA  G+  GR+ EIQR+IGRALRS +DL  LG R I +DCDVIQA
Sbjct: 63  EYSMIPRATGERNQREAAKGKLSGRTMEIQRLIGRALRSSIDLEKLGERTITLDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA+      +         S VL   VAA+S G   G   +DL+Y E
Sbjct: 123 DGGTRTASITGAFVAMAIAAAKLLR-EGTITDSPVLS-SVAAVSVGKCEGNIFLDLNYVE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS+ +VD N +  D G  +EVQG+ E ATF +     +L++A+  I  L++ Q++V+
Sbjct: 181 DSSAEVDMNVIQNDLGEYIEVQGTGEEATFCRKELNTLLDMAEIGIHQLLEKQREVL 237


>gi|297583709|ref|YP_003699489.1| ribonuclease PH [Bacillus selenitireducens MLS10]
 gi|297142166|gb|ADH98923.1| ribonuclease PH [Bacillus selenitireducens MLS10]
          Length = 261

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 115/234 (49%), Positives = 160/234 (68%), Gaps = 3/234 (1%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  +Q+R+I +     K+ EGS L+ FGDT ++ +A++E++VP ++R    GW+TAEY M
Sbjct: 7   RLNHQLRDIDMIPGYIKHPEGSVLISFGDTKVICSASIEDRVPPFLRGQGKGWVTAEYAM 66

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LPR+T +R  RE+  G+  GR+ EIQR+IGRALRSVV+L  LG R + +DCDVIQADGGT
Sbjct: 67  LPRATESRNIRESSKGKVTGRTMEIQRLIGRALRSVVNLDLLGERTVWVDCDVIQADGGT 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDST 184
           RTA+ITGA+ A+    +++ +   K +    L   +AAIS G+   G  ++DLDY EDST
Sbjct: 127 RTASITGAFTAVALAFENLME-EGKLE-ENPLTDFLAAISVGVASDGDILLDLDYSEDST 184

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            DVD N VMT +G +VEVQG+ E ATFS+     ML++A++ I  LI  QK VI
Sbjct: 185 ADVDMNIVMTGTGQLVEVQGTGEEATFSRAEMNKMLDVAEEGIGKLIDKQKAVI 238


>gi|299139261|ref|ZP_07032437.1| ribonuclease PH [Acidobacterium sp. MP5ACTX8]
 gi|298598941|gb|EFI55103.1| ribonuclease PH [Acidobacterium sp. MP5ACTX8]
          Length = 248

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 116/239 (48%), Positives = 155/239 (64%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R  GR  +Q R + LT      AEGS L++ G T +L  AT+E  VP W+RN+  GW+T
Sbjct: 10  FRSGGRAASQARALRLTPGFVATAEGSVLIEVGHTRVLCNATVENGVPGWMRNSGRGWVT 69

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  RE+  G+ GGR+ EIQR+IGR+LRSVVD+  LG R II+DCDV+Q
Sbjct: 70  AEYGMLPRATLTRTARESERGKIGGRTHEIQRLIGRSLRSVVDMRLLGERTIILDCDVLQ 129

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA  AL   L  +    +  +    LK  VAA S G++ G  ++DL Y 
Sbjct: 130 ADGGTRTAAITGACTALALALGKLVQAGSLKE--SPLKQMVAATSVGIVDGRVLLDLAYE 187

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  +VD N VMT  G +VE Q +AER T+++     ML++A   I +L+K Q++ ++
Sbjct: 188 EDSRAEVDMNVVMTADGGLVETQATAERGTYTRAQLNEMLDVAAVGIEELLKAQRECLA 246


>gi|33592677|ref|NP_880321.1| ribonuclease PH [Bordetella pertussis Tohama I]
 gi|33601937|ref|NP_889497.1| ribonuclease PH [Bordetella bronchiseptica RB50]
 gi|61216026|sp|Q7VXY3|RNPH_BORPE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61216032|sp|Q7WI90|RNPH_BORBR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|33572323|emb|CAE41877.1| ribonuclease PH [Bordetella pertussis Tohama I]
 gi|33576375|emb|CAE33453.1| ribonuclease PH [Bordetella bronchiseptica RB50]
 gi|332382092|gb|AEE66939.1| ribonuclease PH [Bordetella pertussis CS]
          Length = 246

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 116/240 (48%), Positives = 157/240 (65%), Gaps = 8/240 (3%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  + +R  SL R  ++YAEGS LV+ G+TH+L TA++ EKVP +++    GW+TA
Sbjct: 11  RPSGRAVDALRPFSLERGFTRYAEGSVLVRAGNTHVLCTASVLEKVPPFLKGRGEGWVTA 70

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V DL  LG R + +DCDV+QA
Sbjct: 71  EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDLRLLGERTLHLDCDVLQA 130

Query: 122 DGGTRTAAITG---AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           DGGTR A+ITG   A       L    D ++       ++  VAA+S G++ G  ++DLD
Sbjct: 131 DGGTRCASITGAWVAAADAVALLMQRGDLAHN-----PIRDAVAAVSVGLVDGRAVLDLD 185

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y EDS    D N VMT SG  VEVQG+ E ATF++     ML LA+  IA L++ Q++ +
Sbjct: 186 YQEDSACAADVNVVMTGSGAFVEVQGTGEGATFTRGELDTMLGLAEGGIAQLVRAQREAL 245


>gi|256375162|ref|YP_003098822.1| ribonuclease PH [Actinosynnema mirum DSM 43827]
 gi|255919465|gb|ACU34976.1| ribonuclease PH [Actinosynnema mirum DSM 43827]
          Length = 254

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 111/241 (46%), Positives = 160/241 (66%), Gaps = 1/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR ++ +R+I +TR   ++  GS L++FG+T +L  A++ E VP W   +  GW+T
Sbjct: 2   LRTDGRNDDVLRDIRITRGFQQWPAGSVLIEFGNTRVLCAASVTEGVPRWRSGSGLGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP +T  R  RE++ GR GGR+ EI R+IGR+LR+ +DL+ALG   I+IDCDVIQ
Sbjct: 62  AEYAMLPSATHTRGDRESIKGRVGGRTHEISRLIGRSLRACIDLAALGENTIVIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D +  +   + +    Q L   ++A+S G++ G   +DL Y 
Sbjct: 122 ADGGTRTAAITGAYVALADAVTWL-GAAGRLADPQPLSCAISAVSVGVVDGRVRLDLPYE 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  +VD N V TD+G +VEVQG+ E ATF++     ML+LA    A+L +LQ + ++ 
Sbjct: 181 EDSRAEVDMNVVATDAGTLVEVQGTGEGATFARSTLDRMLDLALQGCAELNRLQTEALAQ 240

Query: 241 E 241
            
Sbjct: 241 P 241


>gi|86607255|ref|YP_476018.1| ribonuclease PH [Synechococcus sp. JA-3-3Ab]
 gi|123504955|sp|Q2JRJ9|RNPH_SYNJA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|86555797|gb|ABD00755.1| ribonuclease PH [Synechococcus sp. JA-3-3Ab]
          Length = 242

 Score =  219 bits (557), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 113/243 (46%), Positives = 159/243 (65%), Gaps = 11/243 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   Q+R IS  R  ++YA GS LVKFGDTH+L TA++ E+VP +++NT  GW+TA
Sbjct: 5   RPDGRTAAQLRPISFQRHFTRYAPGSVLVKFGDTHVLCTASVAEEVPPFLQNTGQGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE +  +  GR+ EIQR+IGR+LR+ +D   LGSR I +D DV+QA
Sbjct: 65  EYRMLPTATQQRQPRETL--KVSGRTAEIQRLIGRSLRAALDFHKLGSRTITVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCL-----QHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           DG TRTAAITG +VALHD +     Q + D +    L Q     VAA+S G++ G  +VD
Sbjct: 123 DGSTRTAAITGGYVALHDAITWLYKQGLLDPAQGSPLRQ----QVAALSVGIVRGEVLVD 178

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           L Y EDS  +VD N VM + G ++E+QG+AE   F +     ML++A+  I +L++ Q++
Sbjct: 179 LCYEEDSQAEVDMNIVMNEQGALIEIQGTAEAGCFDRSQLLQMLDMAQAGIQELLRAQRE 238

Query: 237 VIS 239
            ++
Sbjct: 239 TLN 241


>gi|302529720|ref|ZP_07282062.1| ribonuclease PH [Streptomyces sp. AA4]
 gi|302438615|gb|EFL10431.1| ribonuclease PH [Streptomyces sp. AA4]
          Length = 258

 Score =  218 bits (556), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 117/238 (49%), Positives = 160/238 (67%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++Q+RE+ LTR   K+  GS LV+FG+T +L  A++ E VP W   +  GW+TA
Sbjct: 3   RKDGRNDDQLREVKLTRGFQKWPAGSVLVEFGNTRVLCAASVTEGVPRWRAGSGLGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  REAV GR GGR+ EI R+IGR+LR+ +DL+ALG   I+IDCDVIQA
Sbjct: 63  EYAMLPSATNTRSDREAVKGRIGGRTHEISRLIGRSLRACIDLAALGENTIVIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAA+TG +VAL D +  +   +N+    Q L   VAA+S G++ G   +DL Y E
Sbjct: 123 DGGTRTAAVTGGYVALADAITWL-GAANRLNDPQPLSSSVAAVSVGVVDGRVRLDLPYEE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G ++EVQG+ E ATF++     ML+LA     +L +LQK+ ++
Sbjct: 182 DSRAEVDMNVVATDAGTLIEVQGTGEGATFARSTLDTMLDLALAGCEELTRLQKEALA 239


>gi|297242886|ref|ZP_06926824.1| ribonuclease PH [Gardnerella vaginalis AMD]
 gi|296889097|gb|EFH27831.1| ribonuclease PH [Gardnerella vaginalis AMD]
          Length = 253

 Score =  218 bits (556), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 105/223 (47%), Positives = 150/223 (67%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR  +++R + +TR+ +   EGS L++ G+T ++ TAT    VP W R++  GW+T
Sbjct: 14  IRVDGRNVDELRPVRITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRRDSGLGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR VVD+ A+G  QI IDCDV+Q
Sbjct: 74  AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQIDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA+VAL D L   E   +    + V+K  ++A+S G++ G P++DL Y 
Sbjct: 134 ADGGTRTASVTGAYVALVDALNWAEKNGHIRSAASVIKDSISAVSVGVINGTPMLDLPYV 193

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           EDS    D N  MT SG  +E+QG+AE   F++D    +L+LA
Sbjct: 194 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRDELNTLLDLA 236


>gi|163845843|ref|YP_001633887.1| ribonuclease PH [Chloroflexus aurantiacus J-10-fl]
 gi|222523554|ref|YP_002568024.1| ribonuclease PH [Chloroflexus sp. Y-400-fl]
 gi|163667132|gb|ABY33498.1| ribonuclease PH [Chloroflexus aurantiacus J-10-fl]
 gi|222447433|gb|ACM51699.1| ribonuclease PH [Chloroflexus sp. Y-400-fl]
          Length = 250

 Score =  218 bits (556), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 113/225 (50%), Positives = 153/225 (68%), Gaps = 8/225 (3%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR  +Q+R IS+    + YAEGS L+ +G T +L TAT+E+ VP W+R  + GW+T
Sbjct: 2   MRIDGRSPDQLRPISIEIGAAPYAEGSALIAYGKTRVLCTATVEDGVPAWMRGQQSGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQG--GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           AEY MLPR+T  R +RE    R G  GR+QEIQR+IGR+LR+ +DL+ALG R I IDCDV
Sbjct: 62  AEYAMLPRATLQRTRRE----RNGPSGRTQEIQRLIGRSLRAAIDLNALGERTITIDCDV 117

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QADGGTRTAAI+G +VAL   + ++   S   +    L   VAA+S GML G  ++DL 
Sbjct: 118 LQADGGTRTAAISGGYVALALAVDYLVR-SGVLETRPTLT-PVAAVSVGMLQGVLLLDLC 175

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           Y EDS  D+D N VM  +G  +EVQ +AER+  ++D   A+L+LA
Sbjct: 176 YEEDSQADLDCNVVMNSAGGYIEVQATAERSAVTRDQLNALLDLA 220


>gi|225351161|ref|ZP_03742184.1| hypothetical protein BIFPSEUDO_02751 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158617|gb|EEG71859.1| hypothetical protein BIFPSEUDO_02751 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 253

 Score =  218 bits (556), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 106/224 (47%), Positives = 152/224 (67%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R + +TR  +   EGS LV+ G+T ++ TAT    VP W +++  GW+T
Sbjct: 13  IRTDGRKVDELRPVRITRHFTDVPEGSVLVECGNTRVMCTATFTAGVPRWRKDSGLGWVT 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  RE+V G+ GGR+ EI R+IGR LR VVD+ ALG  Q+ IDCDV+Q
Sbjct: 73  AEYAMLPRATADRTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENQVQIDCDVLQ 132

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D ++  E   +     +V+K  V+A+S G++ G P++DL Y 
Sbjct: 133 ADGGTRTASITGAYVALVDAMRWAEKHKHIRSAERVIKDSVSAVSVGVIDGTPMLDLPYI 192

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           EDS    D N  MT SG  +E+QG+AE   F++    A+L+LA+
Sbjct: 193 EDSKAMTDMNVAMTGSGEFIEIQGTAEHRPFNRAELNALLDLAE 236


>gi|120405241|ref|YP_955070.1| ribonuclease PH [Mycobacterium vanbaalenii PYR-1]
 gi|166228297|sp|A1TD14|RNPH_MYCVP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|119958059|gb|ABM15064.1| RNAse PH [Mycobacterium vanbaalenii PYR-1]
          Length = 260

 Score =  218 bits (556), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 109/234 (46%), Positives = 156/234 (66%), Gaps = 1/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R +++TR  + +  GS LV+FG T ++ TA++ E VP W + +  GW+TA
Sbjct: 4   REDGRLDDELRPVTITRGFTTHPAGSVLVEFGQTRVMCTASVTEGVPRWRKGSGQGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V GR GGR+QEI R++GR+LR+ +DL+ALG   I IDCDV+QA
Sbjct: 64  EYAMLPAATHERSGRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVTYLA-AAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYTE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  +VD N V TD+G +VE+QG+ E ATF +     ML+ A      L ++Q+
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKMLDAAMAACDQLFEIQR 236


>gi|171910497|ref|ZP_02925967.1| ribonuclease PH [Verrucomicrobium spinosum DSM 4136]
          Length = 269

 Score =  218 bits (556), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 117/239 (48%), Positives = 154/239 (64%), Gaps = 4/239 (1%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGWITAEY 63
           R  +Q+R +S    ++ +A GS LV FG+T ++  AT++E+VP W++      GW+TAEY
Sbjct: 7   RTPDQLRNVSFQLDIAPHATGSVLVSFGNTKVICAATIQEEVPRWMKAQGVSGGWLTAEY 66

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
            MLP ST +R  R+   G+  GRSQEIQR+IGR+LR+VVDL  LG R + IDCDV+QADG
Sbjct: 67  SMLPYSTLDRKDRDISKGKLDGRSQEIQRLIGRSLRAVVDLEKLGPRTLWIDCDVLQADG 126

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
           GTRTA+ITGA VA       + +     Q  Q LK  VAAIS G+     ++DL Y ED 
Sbjct: 127 GTRTASITGACVASAIAFNRLLEKGVLRQ--QPLKKKVAAISVGIFRNQALLDLCYEEDR 184

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
             DVD N VMT+ G  VE+QGS E +TFS+    AML L K  I +L KLQ +VI++ V
Sbjct: 185 DADVDCNLVMTEDGQFVEIQGSGEESTFSEAQLSAMLTLGKKGIVELCKLQAEVINSAV 243


>gi|33597539|ref|NP_885182.1| ribonuclease PH [Bordetella parapertussis 12822]
 gi|61216028|sp|Q7W6C1|RNPH_BORPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|33573967|emb|CAE38285.1| ribonuclease PH [Bordetella parapertussis]
          Length = 250

 Score =  218 bits (556), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 115/241 (47%), Positives = 158/241 (65%), Gaps = 8/241 (3%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R +GR  + +R  SL R  ++YAEGS LV+ G+TH+L TA++ EKVP +++    GW+T
Sbjct: 14  VRPAGRAVDALRPFSLERGFTRYAEGSVLVRAGNTHVLCTASVLEKVPPFLKGRGEGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V DL  LG R + +DCDV+Q
Sbjct: 74  AEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDLRLLGERTLHLDCDVLQ 133

Query: 121 ADGGTRTAAITG---AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           ADGGTR A+ITG   A       L    D ++       ++  VAA+S G++ G  ++DL
Sbjct: 134 ADGGTRCASITGAWVAAADAVALLMQRGDLAHN-----PIRDAVAAVSVGLVDGRAVLDL 188

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           DY EDS    D N VMT SG  VEVQG+ E ATF++     ML LA+  IA L++ Q++ 
Sbjct: 189 DYQEDSACAADVNVVMTGSGAFVEVQGTGEGATFTRGELDTMLGLAEGGIAQLVRAQREA 248

Query: 238 I 238
           +
Sbjct: 249 L 249


>gi|225165849|ref|ZP_03727626.1| tRNA nucleotidyltransferase [Opitutaceae bacterium TAV2]
 gi|224799908|gb|EEG18360.1| tRNA nucleotidyltransferase [Opitutaceae bacterium TAV2]
          Length = 254

 Score =  218 bits (555), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 114/247 (46%), Positives = 158/247 (63%), Gaps = 12/247 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK--HGWI 59
           R  GR+ +Q+R I+    ++ +A GS L  FG+T ++  AT+E KVP+W++  K   GW+
Sbjct: 6   RADGRRPDQLRPITFEANIAPHATGSVLASFGNTRVICAATIEPKVPLWMKQQKVPGGWL 65

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           TAEY +LP ST +R  R+   G+  GR+ EIQR+IGRALR+V+DLS LG   + IDCDV+
Sbjct: 66  TAEYSLLPYSTHDRKARDISKGKLDGRTVEIQRLIGRALRAVLDLSKLGENTLWIDCDVL 125

Query: 120 QADGGTRTAAITGAWVALHDCLQHMED----CSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
           QADGGTRTA+ITGA++A    LQ + D      N F  S      +AAIS G+L G  ++
Sbjct: 126 QADGGTRTASITGAYLATRLALQKLLDTGKLAENPFTDS------IAAISVGILGGRELL 179

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DL Y ED   +VDAN VMT  GH VEVQ S E ATF+ D   A+L LA+  + ++  LQ 
Sbjct: 180 DLPYTEDKDAEVDANIVMTGRGHFVEVQTSGEEATFTYDQLQALLGLAQKGLKEIAALQT 239

Query: 236 DVISNEV 242
             ++ ++
Sbjct: 240 AFLTRQL 246


>gi|89098915|ref|ZP_01171795.1| ribonuclease PH [Bacillus sp. NRRL B-14911]
 gi|89086319|gb|EAR65440.1| ribonuclease PH [Bacillus sp. NRRL B-14911]
          Length = 277

 Score =  218 bits (555), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 115/245 (46%), Positives = 160/245 (65%), Gaps = 7/245 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR++ Q+R I +      + EGS L+  G+T ++ TA+++E+VP ++R    GWIT
Sbjct: 31  MRKDGREQLQLRPIHIETNYLMHPEGSVLISVGNTKVICTASIDERVPPFMRGEGKGWIT 90

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 91  AEYSMLPRATEQRNIREAAKGKITGRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQ 150

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCS--NKFQLSQVLKGHVAAISCGMLCGYPIV-DL 177
           ADGGTRTA+ITGA+VA+   ++ +      +KF ++Q L    AA S G+L    +V DL
Sbjct: 151 ADGGTRTASITGAFVAMAIAVEKLYSNKKLSKFPITQFL----AATSVGILENKQVVLDL 206

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +Y EDS  +VD N VMT +G  VE+QG+ E ATFS      +L  A++ +  L  +QK V
Sbjct: 207 NYAEDSKAEVDMNVVMTGNGEFVELQGTGEEATFSASQLTELLKAAEEGVGRLFDIQKQV 266

Query: 238 ISNEV 242
           +  ++
Sbjct: 267 LGEKI 271


>gi|283782839|ref|YP_003373593.1| tRNA nucleotidyltransferase [Gardnerella vaginalis 409-05]
 gi|283441100|gb|ADB13566.1| tRNA nucleotidyltransferase [Gardnerella vaginalis 409-05]
          Length = 253

 Score =  218 bits (555), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 105/223 (47%), Positives = 150/223 (67%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR  +++R + +TR+ +   EGS L++ G+T ++ TAT    VP W R++  GW+T
Sbjct: 14  IRVDGRDVDELRPVHITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRRDSGLGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR VVD+ A+G  QI IDCDV+Q
Sbjct: 74  AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQIDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA+VAL D L   E   +    + V+K  ++A+S G++ G P++DL Y 
Sbjct: 134 ADGGTRTASVTGAYVALVDALHWAEKNGHIRSAANVIKDSISAVSVGVINGTPMLDLPYV 193

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           EDS    D N  MT SG  +E+QG+AE   F++D    +L+LA
Sbjct: 194 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRDELNTLLDLA 236


>gi|126730097|ref|ZP_01745909.1| ribonuclease PH [Sagittula stellata E-37]
 gi|126709477|gb|EBA08531.1| ribonuclease PH [Sagittula stellata E-37]
          Length = 206

 Score =  218 bits (555), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 103/207 (49%), Positives = 146/207 (70%), Gaps = 2/207 (0%)

Query: 32  FGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQ 91
            GDTH+L TA+LEE+VP +++ +  GW+TAEYGMLPRST +R++REA  G+QGGR+ EIQ
Sbjct: 1   MGDTHVLCTASLEERVPPFVKGSGQGWVTAEYGMLPRSTSSRMRREAAMGKQGGRTVEIQ 60

Query: 92  RMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF 151
           R+IGRALR+ VD +ALG RQI +DCDVIQADGGTR A+ITG WVAL   +  +    +  
Sbjct: 61  RLIGRALRAGVDRNALGERQITVDCDVIQADGGTRCASITGGWVALRLAVNKLMKAGDI- 119

Query: 152 QLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
            ++  L   VAA+SCG+  G  ++DLDY EDS   VD NF++     ++EVQ SAE + F
Sbjct: 120 -VTDPLISEVAAVSCGIYAGQAVLDLDYPEDSEAGVDGNFILRGDNALIEVQMSAEGSVF 178

Query: 212 SQDHFFAMLNLAKDRIADLIKLQKDVI 238
           S++    +++LA+  + +L+  Q+  +
Sbjct: 179 SRNQMTQLMDLAEKGVVELVAAQRAAV 205


>gi|262193889|ref|YP_003265098.1| ribonuclease PH [Haliangium ochraceum DSM 14365]
 gi|262077236|gb|ACY13205.1| ribonuclease PH [Haliangium ochraceum DSM 14365]
          Length = 250

 Score =  218 bits (555), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 110/229 (48%), Positives = 153/229 (66%), Gaps = 5/229 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ NQ+R + +T    +YAEGS L+K G+T +L  A++EE+VP ++     GW+TA
Sbjct: 3   RPDGREANQLRPVEITTGFQQYAEGSALIKSGNTWVLCAASIEERVPPFLAGRGTGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  R +     GGR +EIQR+IGR+LR+ V++ ALG R I IDCDV+QA
Sbjct: 63  EYAMLPRSTHTRSGRHS-----GGRGKEIQRLIGRSLRAAVNMEALGERAITIDCDVLQA 117

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+ITG +VAL   +  +        +  VL+  +AAIS G++ G   +DL Y E
Sbjct: 118 DGGTRVASITGGYVALALAVDGLVRAGLVASVESVLREPIAAISVGIIDGEARLDLPYAE 177

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           DST +VD N VMT+SGH+VEVQG+ E+ TFS+    ++L+LA + +  L
Sbjct: 178 DSTAEVDMNVVMTESGHLVEVQGTGEQGTFSRAQLDSLLDLATEGVKRL 226


>gi|148284140|ref|YP_001248230.1| tRNA nucleotidyltransferase [Orientia tsutsugamushi str. Boryong]
 gi|146739579|emb|CAM79326.1| tRNA nucleotidyltransferase [Orientia tsutsugamushi str. Boryong]
          Length = 251

 Score =  218 bits (555), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 116/238 (48%), Positives = 157/238 (65%), Gaps = 7/238 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG-WI 59
           MRL  R++++MR IS+       ++GSCL K G+TH++ +AT+EE +P++++N K G W+
Sbjct: 1   MRLCSRKDSEMRPISIELGAMLNSKGSCLTKIGNTHVICSATVEESLPLFLKNKKQGGWV 60

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           TAEY MLP S+  RVKRE + G+  GR+QEIQR+I RA+R+ VDL  LG RQI+IDCDVI
Sbjct: 61  TAEYSMLPGSSLQRVKREGIQGK-SGRTQEIQRLISRAMRAAVDLKLLGERQILIDCDVI 119

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
            ADGGTR A+ITG +VA+  CL   +    K      +   VAAISCG+  G  IVDLDY
Sbjct: 120 NADGGTRAASITGGYVAM--CLAVNKLMQEKNLAVYPILYQVAAISCGISNGRVIVDLDY 177

Query: 180 GEDSTIDVDANFVMTDSG---HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            EDS  +VDANFV   +G    IVE+Q +AE+  F  +    ML LA+  I  +  +Q
Sbjct: 178 QEDSCAEVDANFVFRRAGTIIEIVEIQVAAEKKAFVDEQVIQMLKLAQKAINHIFDIQ 235


>gi|317129838|ref|YP_004096120.1| ribonuclease PH [Bacillus cellulosilyticus DSM 2522]
 gi|315474786|gb|ADU31389.1| ribonuclease PH [Bacillus cellulosilyticus DSM 2522]
          Length = 255

 Score =  218 bits (555), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 7/241 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+ + +R++ +     K+ EGS L+ FG+T ++  A++E++VP ++R    GWIT
Sbjct: 1   MRHDGRKTDDIRKVDIIPHYIKHPEGSVLISFGETKVICAASIEDRVPPFMRGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALRSVVDL A+G R I IDCDVIQ
Sbjct: 61  AEYSMLPRATEQRNIRESAKGKLSGRTMEIQRLIGRALRSVVDLDAIGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCS--NKFQLSQVLKGHVAAISCGMLCG-YPIVDL 177
           ADGGTRTA++TGA+VA+   L  +++     KF +   L    AAIS G+  G   I+DL
Sbjct: 121 ADGGTRTASVTGAFVAMALALHKLKEAKQIKKFPIKHFL----AAISVGVNEGNIAILDL 176

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           DY EDS  +VD N +MT +   VE+QG+ E ATFS+     ML+LA+  I +L   QK+ 
Sbjct: 177 DYIEDSKANVDMNIIMTGNSEFVEIQGTGEEATFSRKQLNEMLDLAELGINELFLHQKEA 236

Query: 238 I 238
           +
Sbjct: 237 L 237


>gi|298253316|ref|ZP_06977108.1| ribonuclease PH [Gardnerella vaginalis 5-1]
 gi|297532711|gb|EFH71597.1| ribonuclease PH [Gardnerella vaginalis 5-1]
          Length = 247

 Score =  218 bits (554), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 105/223 (47%), Positives = 150/223 (67%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR  +++R + +TR+ +   EGS L++ G+T ++ TAT    VP W R++  GW+T
Sbjct: 8   IRVDGRDVDELRPVHITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRRDSGLGWVT 67

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR VVD+ A+G  QI IDCDV+Q
Sbjct: 68  AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQIDCDVLQ 127

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA+VAL D L   E   +    + V+K  ++A+S G++ G P++DL Y 
Sbjct: 128 ADGGTRTASVTGAYVALVDALHWAEKNGHIRSAANVIKDSISAVSVGVINGTPMLDLPYV 187

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           EDS    D N  MT SG  +E+QG+AE   F++D    +L+LA
Sbjct: 188 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRDELNTLLDLA 230


>gi|227495770|ref|ZP_03926081.1| ribonuclease PH [Actinomyces urogenitalis DSM 15434]
 gi|226834699|gb|EEH67082.1| ribonuclease PH [Actinomyces urogenitalis DSM 15434]
          Length = 263

 Score =  218 bits (554), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 110/241 (45%), Positives = 156/241 (64%), Gaps = 2/241 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R +++TRR  ++ EGS LV+FG T +L  A+  E VP W + +  GW+TA
Sbjct: 9   RKDGRATDELRPVTITRRWQEHGEGSVLVEFGRTRVLCVASFTEGVPRWRKGSGEGWVTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+   R  RE+V G+ GGR+ EI R+IGRALR VVD++ALG   I +DCDV+QA
Sbjct: 69  EYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRALRGVVDVAALGENTIALDCDVLQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCS--NKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           DGGTRTA++TGA+VAL D +    +    +      V+   ++AIS G++ G P +DL Y
Sbjct: 129 DGGTRTASVTGAYVALADAVAWGTERGLISPRAGKPVIADSLSAISVGIIDGVPCLDLPY 188

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED     D N V T +G  +EVQG+AE A F++D   A+L+LA     +L +LQK V++
Sbjct: 189 EEDVRAHTDMNVVQTGAGKFIEVQGTAEHAPFNRDELCALLDLATKGNGELAELQKAVLA 248

Query: 240 N 240
            
Sbjct: 249 G 249


>gi|317482025|ref|ZP_07941050.1| ribonuclease PH [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688513|ref|YP_004208247.1| ribonuclease PH [Bifidobacterium longum subsp. infantis 157F]
 gi|322690521|ref|YP_004220091.1| ribonuclease PH [Bifidobacterium longum subsp. longum JCM 1217]
 gi|316916592|gb|EFV37989.1| ribonuclease PH [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455377|dbj|BAJ65999.1| putative ribonuclease PH [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320459849|dbj|BAJ70469.1| putative ribonuclease PH [Bifidobacterium longum subsp. infantis
           157F]
          Length = 254

 Score =  218 bits (554), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 107/239 (44%), Positives = 157/239 (65%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R + +TR  +   EGS L++ G+T ++ TAT    VP W +++  GW+T
Sbjct: 14  IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR V+D+ ALG  QI +DCDV+Q
Sbjct: 74  AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA+VAL D +   E   +    S+VLK +V+A+S G++ G P++DL Y 
Sbjct: 134 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 193

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N  MT SG  +E+QG+AE   F++     +L+LA+    +L   Q+  +S
Sbjct: 194 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 252


>gi|320457392|dbj|BAJ68013.1| putative ribonuclease PH [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 254

 Score =  218 bits (554), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 107/239 (44%), Positives = 157/239 (65%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R + +TR  +   EGS L++ G+T ++ TAT    VP W +++  GW+T
Sbjct: 14  IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR V+D+ ALG  QI +DCDV+Q
Sbjct: 74  AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA+VAL D +   E   +    S+VLK +V+A+S G++ G P++DL Y 
Sbjct: 134 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 193

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N  MT SG  +E+QG+AE   F++     +L+LA+    +L   Q+  +S
Sbjct: 194 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 252


>gi|86609199|ref|YP_477961.1| ribonuclease PH [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123502063|sp|Q2JKT3|RNPH_SYNJB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|86557741|gb|ABD02698.1| ribonuclease PH [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 244

 Score =  218 bits (554), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 113/242 (46%), Positives = 159/242 (65%), Gaps = 5/242 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R   Q+R +S  R  ++YA GS LVKFG TH+L TA++ E+VP +++NT  GW+TA
Sbjct: 5   RPDNRTAAQLRPVSFERHFTRYAPGSVLVKFGHTHVLCTASVAEEVPPFLQNTGQGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE +  +  GR+ EIQR+IGR+LR+ +D   LGSR I +D DV+QA
Sbjct: 65  EYRMLPGATQQRQPREML--KLSGRTAEIQRLIGRSLRAALDFRKLGSRTITVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQ--HMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           DGGTRTAAITG +VALHD +   + +   +  Q S  L+  VAA+S G++ G  +VDL Y
Sbjct: 123 DGGTRTAAITGGYVALHDAITWLYKQGALDPAQGSP-LRQQVAALSVGIVQGEVLVDLCY 181

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  +VD N VM + G  +E+QG+AE A FS+     ML +A+  I +L++ Q+  ++
Sbjct: 182 EEDSQAEVDMNIVMNEQGSFIEIQGTAEAACFSRPQLLQMLEMAQAGIQELLQAQRQALN 241

Query: 240 NE 241
            E
Sbjct: 242 LE 243


>gi|313672547|ref|YP_004050658.1| rnase ph [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939303|gb|ADR18495.1| RNAse PH [Calditerrivibrio nitroreducens DSM 19672]
          Length = 238

 Score =  218 bits (554), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 104/239 (43%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR  +Q+R+I + +   +Y +GS L+++G+T ++  AT+ E VP +++ T  GW+T
Sbjct: 1   MRNDGRLNDQLRDIRVVKDYIRYPQGSVLIEYGETKVICNATISEGVPPFLKGTGTGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           +EY MLP ST  R +RE+  G+  GR+QEI R+IGR+LRS +DLS +G R I IDCDVIQ
Sbjct: 61  SEYSMLPCSTHTRNQRESQKGKLTGRTQEISRLIGRSLRSAIDLSLIGERTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG ++AL+   Q +   S   ++   +K  VAA+S G++ G  ++DL+Y 
Sbjct: 121 ADGGTRTASITGGFLALYIACQKL---SEDLKIGNPIKSFVAAVSLGIVNGEIMLDLNYE 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N +  +   I+E+QG++E+ TF +D    M++L  + I  LI +QK V++
Sbjct: 178 EDSNAEADINLIANEKSEIIEIQGTSEKGTFDKDMLNKMIDLGLNGINQLIDIQKRVLN 236


>gi|239622472|ref|ZP_04665503.1| ribonuclease PH [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|61216065|sp|Q8G7I0|RNPH_BIFLO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|239514469|gb|EEQ54336.1| ribonuclease PH [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 248

 Score =  218 bits (554), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 107/239 (44%), Positives = 157/239 (65%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R + +TR  +   EGS L++ G+T ++ TAT    VP W +++  GW+T
Sbjct: 8   IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 67

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR V+D+ ALG  QI +DCDV+Q
Sbjct: 68  AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 127

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA+VAL D +   E   +    S+VLK +V+A+S G++ G P++DL Y 
Sbjct: 128 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 187

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N  MT SG  +E+QG+AE   F++     +L+LA+    +L   Q+  +S
Sbjct: 188 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 246


>gi|213691324|ref|YP_002321910.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213522785|gb|ACJ51532.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 258

 Score =  218 bits (554), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 107/239 (44%), Positives = 157/239 (65%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R + +TR  +   EGS L++ G+T ++ TAT    VP W +++  GW+T
Sbjct: 18  IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 77

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR V+D+ ALG  QI +DCDV+Q
Sbjct: 78  AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 137

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA+VAL D +   E   +    S+VLK +V+A+S G++ G P++DL Y 
Sbjct: 138 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 197

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N  MT SG  +E+QG+AE   F++     +L+LA+    +L   Q+  +S
Sbjct: 198 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 256


>gi|23335847|ref|ZP_00121079.1| COG0689: RNase PH [Bifidobacterium longum DJO10A]
 gi|189439894|ref|YP_001954975.1| ribonuclease PH [Bifidobacterium longum DJO10A]
 gi|189428329|gb|ACD98477.1| RNase PH [Bifidobacterium longum DJO10A]
          Length = 258

 Score =  218 bits (554), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 107/239 (44%), Positives = 157/239 (65%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R + +TR  +   EGS L++ G+T ++ TAT    VP W +++  GW+T
Sbjct: 18  IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 77

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR V+D+ ALG  QI +DCDV+Q
Sbjct: 78  AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 137

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA+VAL D +   E   +    S+VLK +V+A+S G++ G P++DL Y 
Sbjct: 138 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 197

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N  MT SG  +E+QG+AE   F++     +L+LA+    +L   Q+  +S
Sbjct: 198 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 256


>gi|23464887|ref|NP_695490.1| ribonuclease PH [Bifidobacterium longum NCC2705]
 gi|227545828|ref|ZP_03975877.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|296453555|ref|YP_003660698.1| ribonuclease PH [Bifidobacterium longum subsp. longum JDM301]
 gi|312133310|ref|YP_004000649.1| rph [Bifidobacterium longum subsp. longum BBMN68]
 gi|23325477|gb|AAN24126.1| probable ribonuclease PH [Bifidobacterium longum NCC2705]
 gi|227213944|gb|EEI81783.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|291517381|emb|CBK70997.1| RNAse PH [Bifidobacterium longum subsp. longum F8]
 gi|296182986|gb|ADG99867.1| ribonuclease PH [Bifidobacterium longum subsp. longum JDM301]
 gi|311772524|gb|ADQ02012.1| Rph [Bifidobacterium longum subsp. longum BBMN68]
          Length = 258

 Score =  218 bits (554), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 107/239 (44%), Positives = 157/239 (65%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R + +TR  +   EGS L++ G+T ++ TAT    VP W +++  GW+T
Sbjct: 18  IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 77

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR V+D+ ALG  QI +DCDV+Q
Sbjct: 78  AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 137

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA+VAL D +   E   +    S+VLK +V+A+S G++ G P++DL Y 
Sbjct: 138 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 197

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N  MT SG  +E+QG+AE   F++     +L+LA+    +L   Q+  +S
Sbjct: 198 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 256


>gi|224282438|ref|ZP_03645760.1| ribonuclease PH [Bifidobacterium bifidum NCIMB 41171]
 gi|311063782|ref|YP_003970507.1| ribonuclease PH Rph [Bifidobacterium bifidum PRL2010]
 gi|313139586|ref|ZP_07801779.1| RNase PH [Bifidobacterium bifidum NCIMB 41171]
 gi|310866101|gb|ADP35470.1| Rph Ribonuclease PH [Bifidobacterium bifidum PRL2010]
 gi|313132096|gb|EFR49713.1| RNase PH [Bifidobacterium bifidum NCIMB 41171]
          Length = 254

 Score =  218 bits (554), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 109/239 (45%), Positives = 155/239 (64%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +++R + +TR  +   EGS L++ G+T ++ TAT    VP W +++  GW+T
Sbjct: 14  IRADGRVVDELRPVRITRHFTDVPEGSVLIECGNTRVMCTATFTPSVPRWRKDSGLGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR VVD+ ALG  QI IDCDV+Q
Sbjct: 74  AEYSMLPRATAERTDRESVRGKVGGRTHEISRLIGRCLRGVVDMKALGENQIQIDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D ++  E   +     +VLK  V+A+S G++ G P++DL Y 
Sbjct: 134 ADGGTRTASITGAYVALVDAMRWAEQKRHIRSADRVLKDAVSAVSVGVINGTPMLDLPYI 193

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N  MT SG  +E+QG+AE   F++     +L+LA+    +L   Q+  +S
Sbjct: 194 EDSQAMTDMNVAMTGSGDFIEIQGTAEHRPFNRAELNTLLDLAEKGNKELQAAQRAALS 252


>gi|308070476|ref|YP_003872081.1| tRNA nucleotidyltransferase [Paenibacillus polymyxa E681]
 gi|305859755|gb|ADM71543.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Paenibacillus polymyxa E681]
          Length = 253

 Score =  217 bits (553), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 109/237 (45%), Positives = 162/237 (68%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R +GR  +++R + LT  V+KYAEGS  ++ G+T ++ TAT+EE+VP +++    GW+TA
Sbjct: 3   RSNGRNGDELRPMKLTAGVNKYAEGSVFIEVGETKVICTATVEERVPPFMKGQGKGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T +R +REA  G+  GR+ EIQR+IGRALRSVV+L ALG R I +DCDVIQA
Sbjct: 63  EYSMLPRATHSRNQREAARGKLTGRTMEIQRLIGRALRSVVNLQALGERTITLDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRT +ITG++VAL   +  +    +K  +  +    +A++S G++    ++DL+Y E
Sbjct: 123 DGGTRTTSITGSFVALAIAVNKIA-TQHKLPVFPITD-FLASVSVGVVGEKALLDLNYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS   VD N VMT SG  VE+QG+ E + F ++    +L+L +  I  +I+ QK+V+
Sbjct: 181 DSKAKVDMNLVMTGSGKYVELQGTGEESPFDRNELDQLLSLGEQGILQMIERQKEVL 237


>gi|300087418|ref|YP_003757940.1| ribonuclease PH [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527151|gb|ADJ25619.1| ribonuclease PH [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 240

 Score =  217 bits (553), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 109/242 (45%), Positives = 156/242 (64%), Gaps = 10/242 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  N MR +++T     +A+GS L++ G T ++ + ++EE+VP ++RN+  GW+TA
Sbjct: 3   RIDGRAANAMRPVTITPGFQAFADGSVLIEQGKTRVICSVSMEERVPAFLRNSGTGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T +R  RE+V G+  GRSQEIQR+IGR+LR+V DLSALG R  ++DCDVIQA
Sbjct: 63  EYAMLPRATTSRTPRESVKGKVSGRSQEIQRLIGRSLRAVTDLSALGERSFVVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQL----SQVLKGHVAAISCGMLCGYPIVDL 177
           D GTRTAAITG +VAL+  L  +      F+L       L+  VAAIS  M     ++D 
Sbjct: 123 DAGTRTAAITGGYVALYLALNKL------FRLGVFKEMPLRAQVAAISVVMRQNNLLLDP 176

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            Y ED   D D N VM   G  +E+QG+AE+  F ++   A+L LA+  I  L ++Q+  
Sbjct: 177 VYEEDCGADADFNLVMNSKGEFLEIQGTAEQRPFKRNTLDAVLGLAEKGIGQLFEIQQTT 236

Query: 238 IS 239
           ++
Sbjct: 237 LA 238


>gi|213965923|ref|ZP_03394114.1| ribonuclease PH [Corynebacterium amycolatum SK46]
 gi|213951501|gb|EEB62892.1| ribonuclease PH [Corynebacterium amycolatum SK46]
          Length = 253

 Score =  217 bits (553), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 110/237 (46%), Positives = 156/237 (65%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  ++MR++++TR  +    GS LV FG+T ++ TA++E+ VP + R++  GW+TA
Sbjct: 10  RADGRAVDEMRKVTITRGFTDNPAGSVLVTFGNTRVMCTASVEQSVPRFKRDSGEGWLTA 69

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R+ RE++ G+  GR+ EI R+IGR+LR+ +DL  LG   I IDCDV+QA
Sbjct: 70  EYSMLPASTHERMPRESMRGKVKGRTHEISRLIGRSLRAAIDLKELGENTINIDCDVLQA 129

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D L ++            LK  VAA+S G++ G   +DL Y E
Sbjct: 130 DGGTRTASITGAYVALADALTYLHAVGA--VPGTPLKAPVAAVSVGIIDGRVCLDLPYEE 187

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  +VD N VMT  G  VE+QG+ E  TF +D    ML+ A+  + +LI LQ++V+
Sbjct: 188 DSRAEVDLNVVMTAEGKFVEIQGTGEEGTFDRDQLNDMLDSAEKGLRELIALQQEVL 244


>gi|309792378|ref|ZP_07686846.1| ribonuclease PH [Oscillochloris trichoides DG6]
 gi|308225599|gb|EFO79359.1| ribonuclease PH [Oscillochloris trichoides DG6]
          Length = 240

 Score =  217 bits (553), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 116/239 (48%), Positives = 156/239 (65%), Gaps = 8/239 (3%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR   ++R I +    + YAEGS L+  G+T +L  A+LE +VP W+R  + GW+TA
Sbjct: 7   RQSGRLPTELRSIEILVNAAPYAEGSALISCGNTRVLCAASLEPQVPGWLRGQQRGWVTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQG--GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           EY +LPRST  R +RE    R G  GR+QEIQR+IGR+LR+ VDL ALG   I +DCDV+
Sbjct: 67  EYSLLPRSTHTRTRRE----RSGPSGRTQEIQRLIGRSLRAAVDLEALGECMITVDCDVL 122

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTRTAAITG +VAL   L+ +   +     +  ++  VAAIS G++ G  ++DLDY
Sbjct: 123 QADGGTRTAAITGGYVALALALRKLH--AEGLIATNPIRYAVAAISVGVVEGQMLLDLDY 180

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS+ D+D N V T SG  VEVQG+AE     +    A+L+LA   IA LI +Q+ V+
Sbjct: 181 AEDSSADLDCNIVQTASGAFVEVQGTAEGMPIDRAQLDALLDLASQGIARLITIQQAVL 239


>gi|310286881|ref|YP_003938139.1| rph Ribonuclease PH [Bifidobacterium bifidum S17]
 gi|309250817|gb|ADO52565.1| rph Ribonuclease PH [Bifidobacterium bifidum S17]
          Length = 243

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 109/239 (45%), Positives = 155/239 (64%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +++R + +TR  +   EGS L++ G+T ++ TAT    VP W +++  GW+T
Sbjct: 3   IRADGRVVDELRPVRITRHFTDVPEGSVLIECGNTRVMCTATFTPSVPRWRKDSGLGWVT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR VVD+ ALG  QI IDCDV+Q
Sbjct: 63  AEYSMLPRATAERTDRESVRGKVGGRTHEISRLIGRCLRGVVDMKALGENQIQIDCDVLQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D ++  E   +     +VLK  V+A+S G++ G P++DL Y 
Sbjct: 123 ADGGTRTASITGAYVALVDAMRWAEQKRHIRSADRVLKDAVSAVSVGVINGTPMLDLPYI 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N  MT SG  +E+QG+AE   F++     +L+LA+    +L   Q+  +S
Sbjct: 183 EDSQAMTDMNVAMTGSGDFIEIQGTAEHRPFNRAELNTLLDLAEKGNKELQAAQRAALS 241


>gi|260886704|ref|ZP_05897967.1| tRNA nucleotidyltransferase [Selenomonas sputigena ATCC 35185]
 gi|330839468|ref|YP_004414048.1| ribonuclease PH [Selenomonas sputigena ATCC 35185]
 gi|260863556|gb|EEX78056.1| tRNA nucleotidyltransferase [Selenomonas sputigena ATCC 35185]
 gi|329747232|gb|AEC00589.1| ribonuclease PH [Selenomonas sputigena ATCC 35185]
          Length = 248

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 116/244 (47%), Positives = 159/244 (65%), Gaps = 9/244 (3%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  + +R + + R   K   GS L++ G T ++  A++E++VP ++R T  GWI A
Sbjct: 3   RIRGRAADALRPLKMMRGFQKGPAGSVLIEMGRTRVICAASVEDRVPYFLRGTGTGWIKA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP +T  R  REA  GRQ GR+QEIQR+IGR+LRSVVDL+ALG R I +DCDVI+A
Sbjct: 63  EYALLPSATSTRTPREACQGRQSGRTQEIQRLIGRSLRSVVDLAALGERTIALDCDVIEA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL--KGHVAAISCGMLC-GYPIVDLD 178
           DGGTRTAAITGA+VAL      +E C++ ++  +    K  +AA+S G+   G PI+DL 
Sbjct: 123 DGGTRTAAITGAFVAL------VEACASFYEKGKTFPVKDFLAAVSVGLAQDGEPILDLC 176

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y EDST  VD N VMT +   VEVQG+ E   FS+     +L LA+  + +LI  QKD +
Sbjct: 177 YEEDSTALVDMNVVMTGAYDFVEVQGTGEGRPFSRREMADLLALAEKGVDELIARQKDAL 236

Query: 239 SNEV 242
             E+
Sbjct: 237 GGEL 240


>gi|187478429|ref|YP_786453.1| ribonuclease PH [Bordetella avium 197N]
 gi|115423015|emb|CAJ49545.1| ribonuclease PH [Bordetella avium 197N]
          Length = 244

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 117/236 (49%), Positives = 162/236 (68%), Gaps = 4/236 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  + +R  SL R  ++YAEGS LV  G+T +L TA++ EKVP +++    GW+T
Sbjct: 8   LRADGRAVDTLRAFSLKRGFTRYAEGSVLVVAGNTQVLCTASVLEKVPPFLKGKGEGWVT 67

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V DL ALG R + +DCDV+Q
Sbjct: 68  AEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTLHLDCDVLQ 127

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTR A+ITGAWVA  D +  + +   +  L+Q  ++ HVAA+S G++ G  ++DL+Y
Sbjct: 128 ADGGTRCASITGAWVAAADAVALLME---RGLLTQNPIRDHVAAVSVGLVGGRAVLDLNY 184

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            EDS  + D N +MT +G  VEVQG+ E ATF++     ML LA+  IA L+  Q+
Sbjct: 185 EEDSACEADVNVIMTGAGAFVEVQGTGEEATFTRAQLDTMLTLAEGGIAKLVAEQR 240


>gi|57233914|ref|YP_182001.1| ribonuclease PH [Dehalococcoides ethenogenes 195]
 gi|123618391|sp|Q3Z6Z8|RNPH_DEHE1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|57224362|gb|AAW39419.1| ribonuclease PH [Dehalococcoides ethenogenes 195]
          Length = 239

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/236 (46%), Positives = 153/236 (64%), Gaps = 2/236 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R I++T     +AEGS L++ G T ++ + ++E+KVP ++RN+  GW+TA
Sbjct: 3   RGDGRNFNQLRPITITPGFQSFAEGSVLIEQGKTRVICSVSMEDKVPQFLRNSGTGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R +R++ +G+  GRSQEIQR+IGR+LRS VDL+ALG R  IIDCDVIQA
Sbjct: 63  EYSMLPRSTVTRTQRDSSAGKISGRSQEIQRLIGRSLRSCVDLAALGERSFIIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTA+ITGA++AL+   + M D     ++       VAA+S  +  G  ++D  Y E
Sbjct: 123 DAGTRTASITGAYIALYLAFKKMVDMGILSKMP--FTSQVAAVSVSIFKGNIVLDPCYDE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           D   +VD N VM D    VE+QG+AE  TFS+D    +L L +  I  L  +Q  +
Sbjct: 181 DFQAEVDFNLVMNDRAEFVEIQGTAEGKTFSRDTLDQVLKLGEAGIWQLFDIQNSI 236


>gi|289422671|ref|ZP_06424511.1| tRNA nucleotidyltransferase [Peptostreptococcus anaerobius 653-L]
 gi|289156850|gb|EFD05475.1| tRNA nucleotidyltransferase [Peptostreptococcus anaerobius 653-L]
          Length = 475

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/237 (46%), Positives = 159/237 (67%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R++ +TR  +KY+ GS L++ G+T ++ TA++EE VP +++    GWITA
Sbjct: 26  RPDGRSLDQIRDVKITRNYTKYSAGSVLIEVGNTKVICTASIEEGVPHFMKGAGSGWITA 85

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R KR++  G+  GRSQEIQR+IGR++RSVVD+ ALG R I IDCDVIQA
Sbjct: 86  EYSMLPSATESRKKRDSSKGKVDGRSQEIQRLIGRSIRSVVDMEALGERTIWIDCDVIQA 145

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D L  +       ++   +K  +AAIS G++     +D+ Y E
Sbjct: 146 DGGTRTASITGAYVALADALYKLYKSGQIKKMP--VKNLLAAISIGIIDDEVRLDICYEE 203

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS   VD N VM + G  +E+QG+ E   F++D    +L LA+    DL++LQ+  +
Sbjct: 204 DSKAMVDTNVVMNNRGEFIEIQGTGEERPFTRDELSRILELAEKGNRDLMRLQRQAL 260


>gi|195953232|ref|YP_002121522.1| ribonuclease PH [Hydrogenobaculum sp. Y04AAS1]
 gi|226736913|sp|B4U8T3|RNPH_HYDS0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|195932844|gb|ACG57544.1| ribonuclease PH [Hydrogenobaculum sp. Y04AAS1]
          Length = 255

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 106/234 (45%), Positives = 159/234 (67%), Gaps = 2/234 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +++R I + R  + +AEGSCLV+FG+T ++ TA++ E VP +++    GWIT
Sbjct: 1   MRKNNRKLDELRPIRIQRDFNIHAEGSCLVEFGNTRVICTASIAESVPPFLKGKNQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V+G+ GGR+ EIQRMIGRA+R+V+DL+ +G R I IDCDVIQ
Sbjct: 61  AEYSMLPRATATRNMRESVTGKIGGRTHEIQRMIGRAMRAVIDLTKIGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I GA++A+ D +  + +   K   S  ++  V A+S G++    ++DLD+ 
Sbjct: 121 ADGGTRTASIVGAFIAMTDAIIKLNE--QKLINSVPIRDTVGAVSVGIVNDRLMLDLDFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           EDS   VD   V T +G +VE+    E AT+++  F AML+L  + +  + +LQ
Sbjct: 179 EDSNAAVDMTIVATGNGEMVEIHSLGEEATYTRKEFEAMLDLGLESLKQIAELQ 232


>gi|325110867|ref|YP_004271935.1| RNAse PH [Planctomyces brasiliensis DSM 5305]
 gi|324971135|gb|ADY61913.1| RNAse PH [Planctomyces brasiliensis DSM 5305]
          Length = 245

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 114/243 (46%), Positives = 157/243 (64%), Gaps = 4/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GW 58
           MR  GRQ  Q+R I + R  +  A GS  +K G T LL TA+++  VP W ++ ++  GW
Sbjct: 1   MRNDGRQAEQLRPIRVQRHFTGSAPGSVYIKAGRTTLLCTASVDLDVPPWKKHEENPSGW 60

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +TAEY MLP ST  R +RE    +  GRS EIQR+IGR+LR+VVD +ALG R I IDCDV
Sbjct: 61  VTAEYNMLPGSTSPRKRRERT--KVDGRSSEIQRLIGRSLRAVVDFAALGPRTITIDCDV 118

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ++ADGGTRT  ITG ++AL D L  ++         ++L   VAAIS G++   P++DLD
Sbjct: 119 LEADGGTRTLGITGGFIALVDALIWLQKQEPTCDPKKILTDTVAAISVGIVRQTPMLDLD 178

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y EDST +VD N VMT SG  VE+QG+AE+ +FS+      L LA+  I +L ++Q+D  
Sbjct: 179 YSEDSTAEVDLNVVMTGSGEFVEIQGTAEQKSFSRTQLDQQLGLAEKAIVELTRIQRDAF 238

Query: 239 SNE 241
            ++
Sbjct: 239 GDQ 241


>gi|229918348|ref|YP_002886994.1| ribonuclease PH [Exiguobacterium sp. AT1b]
 gi|229469777|gb|ACQ71549.1| ribonuclease PH [Exiguobacterium sp. AT1b]
          Length = 249

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 116/227 (51%), Positives = 154/227 (67%), Gaps = 3/227 (1%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R+ +++R + +   V+K+AEGS L+  GDT ++ TAT+EE+VP ++R  K GWI AEY M
Sbjct: 5   RRFDELRPVEIVPHVNKHAEGSVLISIGDTKVICTATVEERVPNFLRGKKQGWINAEYAM 64

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LPR+TG+R  RE+V G+Q GR+ EIQR+IGR+LRSVVDL  LG R I +DCDVIQADGGT
Sbjct: 65  LPRATGDRTVRESVRGKQSGRTMEIQRLIGRSLRSVVDLERLGERTIWVDCDVIQADGGT 124

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTA+ITG + AL   +  +     K + + + +G VAAIS G      ++DLDY ED+  
Sbjct: 125 RTASITGGFCALVLAVDRLIR-QGKLEDTPIKEG-VAAISVGR-TDELVLDLDYLEDAAA 181

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +VD N VMT SG  VEVQG+ E ATF+      ML LA+  I  L K
Sbjct: 182 EVDMNVVMTASGRFVEVQGTGEEATFTLQEMNEMLALAQHGIESLFK 228


>gi|310643658|ref|YP_003948416.1| ribonuclease ph:ham1-like protein [Paenibacillus polymyxa SC2]
 gi|309248608|gb|ADO58175.1| Ribonuclease PH:Ham1-like protein [Paenibacillus polymyxa SC2]
          Length = 253

 Score =  216 bits (551), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 109/237 (45%), Positives = 161/237 (67%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R +GR  +++R + LT  V+KYAEGS  ++ G+T ++ TAT+EE+VP +++    GW+TA
Sbjct: 3   RSNGRNGDELRPMKLTAGVNKYAEGSVFIEVGETKVICTATVEERVPPFMKGQGKGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T +R +REA  G+  GR+ EIQR+IGRALRSVV+L ALG R I +DCDVIQA
Sbjct: 63  EYSMLPRATHSRNQREAARGKLTGRTMEIQRLIGRALRSVVNLQALGERTITLDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRT +ITG++VAL   +  +    +K  +  +    +A++S G++    ++DL+Y E
Sbjct: 123 DGGTRTTSITGSFVALAIAVNKIA-IQHKLPVFPITD-FLASVSVGVVGDKALLDLNYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS   VD N VMT SG  VE+QG+ E + F +     +L+L +  I  +I+ QK+V+
Sbjct: 181 DSKAKVDMNLVMTGSGKYVELQGTGEESPFDRQELDQLLSLGEQGILQMIERQKEVL 237


>gi|154486637|ref|ZP_02028044.1| hypothetical protein BIFADO_00454 [Bifidobacterium adolescentis
           L2-32]
 gi|154084500|gb|EDN83545.1| hypothetical protein BIFADO_00454 [Bifidobacterium adolescentis
           L2-32]
          Length = 254

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 105/224 (46%), Positives = 151/224 (67%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R + +TR  +   EGS L++ G+T ++ TAT    VP W +++  GW+T
Sbjct: 14  VRADGRKVDELRPVRITRHFTDVPEGSVLIECGNTRVMCTATFTAGVPRWRKDSGLGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  RE+V G+ GGR+ EI R+IGR LR VVD+ ALG  Q+ IDCDV+Q
Sbjct: 74  AEYAMLPRATADRTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENQVQIDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D +   E+  +     +VLK  V+A+S G++ G P++DL Y 
Sbjct: 134 ADGGTRTASITGAYVALVDAMHWAEEHKHVKSADRVLKDWVSAVSVGVINGKPMLDLPYI 193

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           EDS    D N  MT SG  +E+QG+AE   F++     +L+LA+
Sbjct: 194 EDSQAMTDMNVAMTGSGDFIEIQGTAEHRPFNRAELNTLLDLAE 237


>gi|212716722|ref|ZP_03324850.1| hypothetical protein BIFCAT_01659 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660426|gb|EEB21001.1| hypothetical protein BIFCAT_01659 [Bifidobacterium catenulatum DSM
           16992]
          Length = 254

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 105/224 (46%), Positives = 151/224 (67%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R + +TR  +   EGS LV+ G+T ++ TAT    VP W +++  GW+T
Sbjct: 14  IRADGRKVDELRPVRITRHFTDVPEGSVLVECGNTRVMCTATFTAGVPRWRKDSGLGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  RE+V G+ GGR+ EI R+IGR LR VVD+ ALG  Q+ IDCDV+Q
Sbjct: 74  AEYAMLPRATADRTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENQVQIDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D ++  E   +     +V+K  V+A+S G++ G P++DL Y 
Sbjct: 134 ADGGTRTASITGAYVALVDAMRWAEKHKHIRSADRVIKDSVSAVSVGVIDGKPMLDLPYI 193

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           EDS    D N  MT SG  +E+QG+AE   F++     +L+LA+
Sbjct: 194 EDSKAMTDMNVAMTGSGEFIEIQGTAEHRPFNRAELNTLLDLAE 237


>gi|227875768|ref|ZP_03993896.1| ribonuclease PH [Mobiluncus mulieris ATCC 35243]
 gi|269977414|ref|ZP_06184386.1| ribonuclease PH [Mobiluncus mulieris 28-1]
 gi|306819041|ref|ZP_07452758.1| tRNA nucleotidyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|307700330|ref|ZP_07637370.1| tRNA nucleotidyltransferase [Mobiluncus mulieris FB024-16]
 gi|227843710|gb|EEJ53891.1| ribonuclease PH [Mobiluncus mulieris ATCC 35243]
 gi|269934330|gb|EEZ90892.1| ribonuclease PH [Mobiluncus mulieris 28-1]
 gi|304648234|gb|EFM45542.1| tRNA nucleotidyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|307614541|gb|EFN93770.1| tRNA nucleotidyltransferase [Mobiluncus mulieris FB024-16]
          Length = 252

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 112/234 (47%), Positives = 155/234 (66%), Gaps = 2/234 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+ +Q+R ++         EG+ L++ G+T +L  A+L E VP W ++T  GW+T
Sbjct: 1   MRKDGRRIDQLRNMAFHLDWVSTPEGAVLIEAGNTRVLCCASLSEGVPRWRKDTGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+QEI R+IGR+LR+ VD +ALG   I IDCDV+Q
Sbjct: 61  AEYSMLPRATATRSTRESVKGKLGGRTQEISRLIGRSLRAGVDYTALGENTIEIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAW+ALH  ++  E  ++ F   + LK  V AIS G++ G   +DL Y 
Sbjct: 121 ADGGTRTAAITGAWIALHRAIE--EGKTSGFIPGEPLKDSVCAISVGIIDGEARLDLPYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           ED   + D N VMT +G ++EVQG+AE   FS++    +L+LA+   ADL + Q
Sbjct: 179 EDVRAETDMNVVMTGTGKLIEVQGTAEGEPFSREDLSKLLDLAQGGCADLTRAQ 232


>gi|229818320|ref|ZP_04448601.1| hypothetical protein BIFANG_03620 [Bifidobacterium angulatum DSM
           20098]
 gi|229784190|gb|EEP20304.1| hypothetical protein BIFANG_03620 [Bifidobacterium angulatum DSM
           20098]
          Length = 254

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 107/240 (44%), Positives = 155/240 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ +++R + +TR  +   EGS L++ G+T ++ TAT    VP W +++  GW+TA
Sbjct: 15  RADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTAGVPRWRKDSGLGWVTA 74

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR VVD+ ALG   I IDCDV+QA
Sbjct: 75  EYAMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENMIQIDCDVLQA 134

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA++TGA+VAL D L   E   +     +VL   V+A+S G++ G P++DL Y E
Sbjct: 135 DGGTRTASVTGAYVALVDALDWAEKHHHIRSAKKVLTDCVSAVSVGVISGTPMLDLPYVE 194

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS    D N  MT SG  +E+QG+AE   F++D    +L+LA+    +L   Q++ ++ +
Sbjct: 195 DSAAMTDMNVAMTGSGAFIELQGTAEHRPFTRDELGTLLDLAEKGNKELQAAQREALAKD 254


>gi|254479649|ref|ZP_05092951.1| ribonuclease PH [Carboxydibrachium pacificum DSM 12653]
 gi|214034420|gb|EEB75192.1| ribonuclease PH [Carboxydibrachium pacificum DSM 12653]
          Length = 229

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 109/210 (51%), Positives = 150/210 (71%), Gaps = 4/210 (1%)

Query: 32  FGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQ 91
            G+T ++ TA++E+KVP + + T  GWIT+EYGMLPR+T  R  RE   GR  GR+ EIQ
Sbjct: 1   MGETKVICTASIEDKVPPFQKGTGKGWITSEYGMLPRATEVRNPREVTKGRPSGRTMEIQ 60

Query: 92  RMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF 151
           R+IGR+LR+VVDL ALG R I IDCDVIQADGGTRTA+ITG+++AL D L  + +   K 
Sbjct: 61  RLIGRSLRAVVDLEALGERTIWIDCDVIQADGGTRTASITGSFIALADALNKLVE---KG 117

Query: 152 QLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERAT 210
           +L ++ LK  VAA+S G++ G  ++DL + ED+   VD N VMTD G IVE+QG+ E   
Sbjct: 118 ELQKIPLKSFVAAVSVGIVEGNKLLDLSFQEDANALVDMNVVMTDKGEIVEIQGTGEGGP 177

Query: 211 FSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           FS+ +F  +L+LA   I  +IK+QK+V+S+
Sbjct: 178 FSRQNFEELLDLAAHGIEQIIKIQKEVLSD 207


>gi|227488224|ref|ZP_03918540.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227091794|gb|EEI27106.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 237

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 103/238 (43%), Positives = 158/238 (66%), Gaps = 7/238 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++RE+ +TR  +    GS LV+FG T ++ TA+++E VP + +++  GW+TA
Sbjct: 7   RADGRATDELREVKITRNFTTNPAGSVLVEFGRTRVMCTASVQEGVPRFKKDSGEGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V G+  GR+QEI R++GR+LR+ +DL+ LG   I +DCDV+QA
Sbjct: 67  EYAMLPAATNERNPRESVKGKVKGRTQEISRLVGRSLRAAIDLTKLGEYTIALDCDVLQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D L  ++        +  L   VAAIS G++ G+P +DL Y E
Sbjct: 127 DGGTRTASITGAYVALADALASIDK-------TDALLPPVAAISVGLIDGHPCLDLPYEE 179

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N +M ++G  VE+QG+ E   FS++    +L+L +    +L++ QK+ ++
Sbjct: 180 DSRAEVDMNIIMKENGTFVEIQGTGEHGDFSREQLGTLLDLGEKGCRELVEKQKEALA 237


>gi|260204601|ref|ZP_05772092.1| ribonuclease PH [Mycobacterium tuberculosis K85]
 gi|289574006|ref|ZP_06454233.1| ribonuclease rphA [Mycobacterium tuberculosis K85]
 gi|289538437|gb|EFD43015.1| ribonuclease rphA [Mycobacterium tuberculosis K85]
          Length = 259

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 110/238 (46%), Positives = 158/238 (66%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  ++   GS L++FG T +L TA++ E VP W + T  GW+TA
Sbjct: 4   REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R  RE+V GR  GR+QEI R+IGR+LR+ +DL+ALG   I IDCDV+QA
Sbjct: 64  EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVTYLS-AAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VE+QG+ E ATF++     +L++A      L   Q+D ++
Sbjct: 183 DSPAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240


>gi|332981492|ref|YP_004462933.1| ribonuclease PH [Mahella australiensis 50-1 BON]
 gi|332699170|gb|AEE96111.1| ribonuclease PH [Mahella australiensis 50-1 BON]
          Length = 247

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 117/240 (48%), Positives = 160/240 (66%), Gaps = 6/240 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R ++LTR   K+ +GS L++ G+T ++ TA +E+KVP +++ T  GWIT
Sbjct: 1   MRAYHRGFDQLRPVTLTRDYLKHPDGSVLIEAGETKIICTAMIEDKVPPFLKGTGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           +EYGMLP ST  R  RE+  G   GR+QEIQR+IGR LRSVVD+SALG R I IDCDVIQ
Sbjct: 61  SEYGMLPGSTQARKIRESTRGHIEGRTQEIQRIIGRTLRSVVDISALGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSN--KFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ADGGTRTA+ITG++VAL   +  + +     +F +S +    VAA+S G++ G  ++DL 
Sbjct: 121 ADGGTRTASITGSFVALAIAINKLFEKKKIERFPISNL----VAAVSVGIVDGQIMLDLC 176

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y ED+   VD N  MTD G  VEVQG+ E A FS+     ++NLA   I +L+ LQ D +
Sbjct: 177 YDEDARAQVDMNIAMTDDGRFVEVQGTGEAAPFSRRQMDELINLADKGIQELMALQIDCL 236


>gi|88856298|ref|ZP_01130957.1| ribonuclease PH [marine actinobacterium PHSC20C1]
 gi|88814382|gb|EAR24245.1| ribonuclease PH [marine actinobacterium PHSC20C1]
          Length = 255

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 113/233 (48%), Positives = 155/233 (66%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ N++R++++ R  S  AEGS L+ FG T +L TA+    VP W+     GW+TA
Sbjct: 3   RHDGRENNELRKVTIERGWSDQAEGSALISFGKTKVLCTASFTNGVPRWMAGKGKGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST +R+ REAV G+ GGR+ EI R+IGR+LR+VVD+ ALG   I+IDCDV+QA
Sbjct: 63  EYSMLPRSTNSRMDREAVKGKVGGRTHEISRLIGRSLRAVVDMKALGENTIVIDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D ++   +     + S+ L   +AA+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAIEWGREKKFIGKNSKALFDSLAAVSVGIIDGEPMLDLAYVE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D   + D N V+T  G  VEVQG+AE A F +    ++L+LA     DL  +Q
Sbjct: 183 DVRAETDMNVVVTGRGLFVEVQGTAEGAPFDRRELDSLLDLALAGAVDLTAMQ 235


>gi|54023062|ref|YP_117304.1| ribonuclease PH [Nocardia farcinica IFM 10152]
 gi|61215825|sp|Q5Z0V1|RNPH_NOCFA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|54014570|dbj|BAD55940.1| putative RNase PH [Nocardia farcinica IFM 10152]
          Length = 257

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 108/238 (45%), Positives = 157/238 (65%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++RE+ +TR  + +  GS LV+FG T ++ TA++ E VP W R++  GW+TA
Sbjct: 4   RADGRADDELREVRITRGFTTHPAGSVLVEFGQTRVMCTASVTEGVPAWRRDSGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V GR GGR+QEI R++GR+LR+ +DL+A+G   I IDCDV+QA
Sbjct: 64  EYAMLPAATHTRSGRESVKGRVGGRTQEISRLVGRSLRACIDLAAIGENTIAIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +   +      Q +   +AA+S G++ G   +DL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVTWL-GAAGALADPQPISCAIAAVSVGVVDGRVRLDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VE+QG+ E ATF +     +L+ A      L  +QK+ ++
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDAALAGCEQLFAVQKEALA 240


>gi|73748973|ref|YP_308212.1| ribonuclease PH [Dehalococcoides sp. CBDB1]
 gi|147669740|ref|YP_001214558.1| ribonuclease PH [Dehalococcoides sp. BAV1]
 gi|289432969|ref|YP_003462842.1| ribonuclease PH [Dehalococcoides sp. GT]
 gi|123619918|sp|Q3ZYH8|RNPH_DEHSC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043760|sp|A5FQ49|RNPH_DEHSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|73660689|emb|CAI83296.1| ribonuclease PH [Dehalococcoides sp. CBDB1]
 gi|146270688|gb|ABQ17680.1| RNAse PH [Dehalococcoides sp. BAV1]
 gi|288946689|gb|ADC74386.1| ribonuclease PH [Dehalococcoides sp. GT]
          Length = 241

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 107/241 (44%), Positives = 156/241 (64%), Gaps = 2/241 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R I++T     +AEGS L++ G T ++ + ++E++VP ++RN+  GW+TA
Sbjct: 3   RGDGRNFNQLRPITITPGFQSFAEGSVLIEQGKTRVICSVSMEDRVPQFLRNSGTGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R +R++ +G+  GRSQEIQR+IGR+LRS VD++ALG R  I+DCDVIQA
Sbjct: 63  EYSMLPRSTVTRTQRDSSAGKISGRSQEIQRLIGRSLRSCVDMAALGERSFIVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTA+ITG+++AL+   + M D     ++       VAA+S  +  G  ++D  Y E
Sbjct: 123 DAGTRTASITGSYIALYLAFKKMVDMGILSKMP--FTSQVAAVSVSIFKGNIVLDPCYDE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D   +VD N VM D G  VE+QG+AE   FS+D    +L L +  I  L  +QK +   +
Sbjct: 181 DFQAEVDFNLVMNDRGEFVEIQGTAEGKAFSRDTLDQVLKLGEAGIRQLFDIQKGITQPQ 240

Query: 242 V 242
           +
Sbjct: 241 L 241


>gi|298345213|ref|YP_003717900.1| ribonuclease PH [Mobiluncus curtisii ATCC 43063]
 gi|304390773|ref|ZP_07372725.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|298235274|gb|ADI66406.1| ribonuclease PH [Mobiluncus curtisii ATCC 43063]
 gi|304325656|gb|EFL92902.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 257

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 113/239 (47%), Positives = 153/239 (64%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ +Q+RE++L        EG  LV  G+T +L +A+L E VP W +++  GW+TA
Sbjct: 7   RADGRRMDQLREVTLHMDWVSAPEGCVLVSCGNTRVLCSASLTEGVPRWRKDSGFGWVTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+  GR+ EI R+IGRALR+ VD +ALG   I IDCDV+QA
Sbjct: 67  EYAMLPRATDTRNTRESVKGKISGRTSEISRLIGRALRAAVDYAALGENTIAIDCDVLQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGAW+AL   +    D  + F      +  V AIS G++   P +DL Y E
Sbjct: 127 DGGTRTASITGAWIALQRAIAVGRD--SGFIPGNPTRDSVCAISVGIIDSIPRLDLPYEE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT SG +VEVQG+AE A FS+    A+L+LA+    DL +LQ+  + +
Sbjct: 185 DSRAETDMNVVMTGSGSLVEVQGTAEGAPFSRAELDALLDLAQAGCRDLTRLQRAAVDS 243


>gi|227542822|ref|ZP_03972871.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227181448|gb|EEI62420.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 237

 Score =  215 bits (548), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 103/238 (43%), Positives = 158/238 (66%), Gaps = 7/238 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++RE+ +TR  +    GS LV+FG T ++ TA+++E VP + +++  GW+TA
Sbjct: 7   RADGRATDELREVRITRNFTTNPAGSVLVEFGRTRVMCTASVQEGVPRFKKDSGEGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V G+  GR+QEI R++GR+LR+ +DL+ LG   I +DCDV+QA
Sbjct: 67  EYAMLPAATNERNPRESVKGKVKGRTQEISRLVGRSLRAAIDLTKLGEYTIALDCDVLQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D L  ++        +  L   VAAIS G++ G+P +DL Y E
Sbjct: 127 DGGTRTASITGAYVALADALASIDK-------TDALLPPVAAISVGLIDGHPCLDLPYEE 179

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N +M ++G  VE+QG+ E   FS++    +L+L +    +L++ QK+ ++
Sbjct: 180 DSRAEVDMNIIMKENGTFVEIQGTGEHGDFSREQLGTLLDLGEKGCRELVEKQKEALA 237


>gi|255029953|ref|ZP_05301904.1| ribonuclease PH [Listeria monocytogenes LO28]
          Length = 244

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 110/239 (46%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
           GR+ N +R I +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+AEY 
Sbjct: 1   GRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYS 60

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQADGG
Sbjct: 61  MLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGG 120

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYGEDS 183
           TRTA+ITGA++A+   +  +++     +    +K  +AA S G+L  G  ++DL+Y EDS
Sbjct: 121 TRTASITGAFIAMVMAIAKLDEAVPFAKFP--VKDFLAATSVGVLEEGGTVLDLNYVEDS 178

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
              VD N +MT SG  VE+QG+ E ATFS+     ++ L K  I++LI++QK+ + ++V
Sbjct: 179 AAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLGDKV 237


>gi|238897732|ref|YP_002923411.1| RNase PH [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|259494122|sp|C4K3X0|RNPH_HAMD5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|229465489|gb|ACQ67263.1| RNase PH [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 241

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 127/243 (52%), Positives = 163/243 (67%), Gaps = 5/243 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q+R ++ TR  +KYAEG+ LV+FG+T +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPSGRTAQQLRPLTFTRHYTKYAEGAVLVEFGETRVLCTATVEEGVPRFLKGQNKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST  R  RE+V G+QGGR+ EIQR+I RALR+ VDL+ LG   I +DCDV+Q
Sbjct: 61  AEYSMLPRSTHQRHARESVKGKQGGRTLEIQRLIARALRAAVDLTKLGEFTIKLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D LQ M     K + S  +KG VAA+S G++ G  I DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALQDALQKMR-VEGKLK-SNPMKGLVAAVSVGVVGGESICDLEYI 178

Query: 181 EDSTIDVDANFVMTDSG---HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           ED+  + D N VM + G    I+E+QG+AE A FS      +L LA D I  + + QK V
Sbjct: 179 EDAIAETDMNVVMIEEGAGRKIIEIQGTAEGAPFSHQQLLELLALADDGIKTIFQAQKKV 238

Query: 238 ISN 240
           +  
Sbjct: 239 LEK 241


>gi|156743859|ref|YP_001433988.1| ribonuclease PH [Roseiflexus castenholzii DSM 13941]
 gi|156235187|gb|ABU59970.1| ribonuclease PH [Roseiflexus castenholzii DSM 13941]
          Length = 261

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 113/244 (46%), Positives = 158/244 (64%), Gaps = 8/244 (3%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  + +R + ++     YAEGS L++ G+T +L TA++EE VP W+R  + GW+T
Sbjct: 2   IRNDGRAPSDLRPVRISIDTYGYAEGSALIEMGNTRVLCTASVEEGVPQWLRGQQRGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQG--GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           AEY +LPRST  R +RE    R G  GR+QEIQR+IGRALR+ V L AL    + IDCDV
Sbjct: 62  AEYALLPRSTAQRTRRE----RNGLSGRTQEIQRLIGRALRAAVALEALDGFTVTIDCDV 117

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QADGGTRTA+ITG +VAL   L H    + +   + + +  VAA+S G + G  ++DLD
Sbjct: 118 LQADGGTRTASITGGYVALALAL-HRLTAAGRLAANPIRRA-VAAVSAGYVGGNALLDLD 175

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y EDS  D+D N V+TD G IVEVQ +AE    S+  F  +++LA D I  L+ LQ++ +
Sbjct: 176 YSEDSVADMDCNLVLTDDGAIVEVQSTAEARAVSRAEFDVLIDLASDGIHRLLALQREAL 235

Query: 239 SNEV 242
           +  V
Sbjct: 236 APVV 239


>gi|212638433|ref|YP_002314953.1| ribonuclease PH [Anoxybacillus flavithermus WK1]
 gi|226736883|sp|B7GH12|RNPH_ANOFW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|212559913|gb|ACJ32968.1| Ribonuclease PH [Anoxybacillus flavithermus WK1]
          Length = 255

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 115/241 (47%), Positives = 156/241 (64%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR  +++R + +     K+ EGS L+  GDT ++ TA++E+KVP ++R    GWIT
Sbjct: 1   MRVDGRTNDELRPVHIEPNYLKHPEGSVLISIGDTKVICTASIEDKVPPFMRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  REA  G+  GR+ EIQR+IGRALRSVVDL  LG + I IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRNIREASKGKLSGRTMEIQRLIGRALRSVVDLQKLGEKTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VA+   L  M     K   +  +   +AA S G+   + I+ DL+Y
Sbjct: 121 ADGGTRTASITGAFVAMTLALGKM--VEEKKLPALPITDFLAATSVGIDGEHGIILDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N VMT SG  VE+QG+ E ATFS +    +L +A+  I +LI  QK+ + 
Sbjct: 179 IEDSKAQVDMNIVMTGSGRFVEIQGTGEEATFSYEQLLDLLTVAEKGIHELIARQKEALG 238

Query: 240 N 240
           +
Sbjct: 239 S 239


>gi|138896231|ref|YP_001126684.1| ribonuclease PH [Geobacillus thermodenitrificans NG80-2]
 gi|196250189|ref|ZP_03148883.1| ribonuclease PH [Geobacillus sp. G11MC16]
 gi|166228283|sp|A4IRI5|RNPH_GEOTN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|134267744|gb|ABO67939.1| Ribonuclease PH [Geobacillus thermodenitrificans NG80-2]
 gi|196210373|gb|EDY05138.1| ribonuclease PH [Geobacillus sp. G11MC16]
          Length = 255

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 115/242 (47%), Positives = 158/242 (65%), Gaps = 3/242 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR   ++R + +     K+AEGS L++ GDT ++ TAT+E+KVP ++R    GWIT
Sbjct: 1   MRTDGRNNRELRPVHIQPHYIKHAEGSVLIEIGDTRVICTATVEDKVPPFMRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+  GR+ EIQR+IGRALRSVV+L  LG R + IDCDVIQ
Sbjct: 61  AEYGMLPRATEQRNAREASKGKVSGRTMEIQRLIGRALRSVVELEQLGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VAL   L  +     K + S  ++  +AA S G+   + ++ DL+Y
Sbjct: 121 ADGGTRTASITGAYVALVLALSKL-VAEGKLE-SLPVRDFLAATSVGIDPEHGVILDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED+   VD N VMT +G  VE+QG+ E A+FS+     +L  A+  I  LI +Q+ V+ 
Sbjct: 179 SEDARAKVDMNVVMTGAGQFVEIQGTGEEASFSRAELEELLETAQLGIEQLITIQRRVLG 238

Query: 240 NE 241
            +
Sbjct: 239 EQ 240


>gi|299822585|ref|ZP_07054471.1| tRNA nucleotidyltransferase [Listeria grayi DSM 20601]
 gi|299816114|gb|EFI83352.1| tRNA nucleotidyltransferase [Listeria grayi DSM 20601]
          Length = 248

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 113/239 (47%), Positives = 158/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR + ++R+I L +    + EGS L+  GDT ++ +A++EEKVP ++R    GWI+
Sbjct: 1   MRHDGRNKGELRKIELIKDYLIHPEGSVLISTGDTKVICSASIEEKVPPFMRGEGKGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+ GGR+ EIQR+IGRALR+VVDL ALG R I IDCDVIQ
Sbjct: 61  AEYAMLPRATTTRNIRESSKGKVGGRTMEIQRLIGRALRAVVDLDALGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VAL   ++ +       +    +K  +AA S G+L     ++DL+Y
Sbjct: 121 ADGGTRTASITGAFVALALAIEKLYQTVPLAKFP--IKDFLAATSVGILENEGAVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS  +VD N VMT +G  VE+QG+ E ATFS+     ++ L K  I  L  +Q++++
Sbjct: 179 IEDSAAEVDMNIVMTGAGQFVELQGTGEEATFSETDLQELITLGKKGIQALNIMQQEIL 237


>gi|261337982|ref|ZP_05965866.1| tRNA nucleotidyltransferase [Bifidobacterium gallicum DSM 20093]
 gi|270277482|gb|EFA23336.1| tRNA nucleotidyltransferase [Bifidobacterium gallicum DSM 20093]
          Length = 255

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 107/239 (44%), Positives = 155/239 (64%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  ++MR I +T   +   EGS L+  G+T ++ TAT  + VP W +++  GW+T
Sbjct: 14  VRPDGRAVDEMRPIRITDSFTDVPEGSVLIACGNTRVMCTATFTQGVPRWRKDSGQGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR VV++ ALG  QI +DCDV+Q
Sbjct: 74  AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVNMKALGENQIQLDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA+ + L+  E+        +V+K  V+A+S G++ G P++DL Y 
Sbjct: 134 ADGGTRTASITGAYVAMVEALRWAEERRFIRSADKVIKDSVSAVSVGVINGTPMLDLPYI 193

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N  MT SG  +E+QG+AE   F++D    +L+LA     +L   Q+ V++
Sbjct: 194 EDSQAMTDMNVAMTGSGEFIEIQGTAEHRPFTRDELNVLLDLATKGNKELQAAQRAVLN 252


>gi|15608480|ref|NP_215856.1| ribonuclease PH [Mycobacterium tuberculosis H37Rv]
 gi|15840795|ref|NP_335832.1| ribonuclease PH [Mycobacterium tuberculosis CDC1551]
 gi|121637271|ref|YP_977494.1| ribonuclease PH [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148661129|ref|YP_001282652.1| ribonuclease PH [Mycobacterium tuberculosis H37Ra]
 gi|148822561|ref|YP_001287315.1| ribonuclease PH [Mycobacterium tuberculosis F11]
 gi|167969088|ref|ZP_02551365.1| ribonuclease PH [Mycobacterium tuberculosis H37Ra]
 gi|215403187|ref|ZP_03415368.1| ribonuclease PH [Mycobacterium tuberculosis 02_1987]
 gi|215410985|ref|ZP_03419793.1| ribonuclease PH [Mycobacterium tuberculosis 94_M4241A]
 gi|215426669|ref|ZP_03424588.1| ribonuclease PH [Mycobacterium tuberculosis T92]
 gi|215430226|ref|ZP_03428145.1| ribonuclease PH [Mycobacterium tuberculosis EAS054]
 gi|215445522|ref|ZP_03432274.1| ribonuclease PH [Mycobacterium tuberculosis T85]
 gi|218753051|ref|ZP_03531847.1| ribonuclease PH [Mycobacterium tuberculosis GM 1503]
 gi|219557243|ref|ZP_03536319.1| ribonuclease PH [Mycobacterium tuberculosis T17]
 gi|224989745|ref|YP_002644432.1| ribonuclease [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253799612|ref|YP_003032613.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 1435]
 gi|254364236|ref|ZP_04980282.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254550352|ref|ZP_05140799.1| ribonuclease PH [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260186279|ref|ZP_05763753.1| ribonuclease PH [Mycobacterium tuberculosis CPHL_A]
 gi|260200397|ref|ZP_05767888.1| ribonuclease PH [Mycobacterium tuberculosis T46]
 gi|289442782|ref|ZP_06432526.1| ribonuclease PH [Mycobacterium tuberculosis T46]
 gi|289446935|ref|ZP_06436679.1| ribonuclease rphA [Mycobacterium tuberculosis CPHL_A]
 gi|289554868|ref|ZP_06444078.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 605]
 gi|289569353|ref|ZP_06449580.1| ribonuclease rphA [Mycobacterium tuberculosis T17]
 gi|289745092|ref|ZP_06504470.1| ribonuclease PH [Mycobacterium tuberculosis 02_1987]
 gi|289749896|ref|ZP_06509274.1| ribonuclease rphA [Mycobacterium tuberculosis T92]
 gi|289753422|ref|ZP_06512800.1| ribonuclease rphA [Mycobacterium tuberculosis EAS054]
 gi|289757445|ref|ZP_06516823.1| ribonuclease rphA [Mycobacterium tuberculosis T85]
 gi|289761501|ref|ZP_06520879.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis GM 1503]
 gi|294994898|ref|ZP_06800589.1| ribonuclease PH [Mycobacterium tuberculosis 210]
 gi|297633893|ref|ZP_06951673.1| ribonuclease PH [Mycobacterium tuberculosis KZN 4207]
 gi|297730881|ref|ZP_06959999.1| ribonuclease PH [Mycobacterium tuberculosis KZN R506]
 gi|298524847|ref|ZP_07012256.1| ribonuclease PH [Mycobacterium tuberculosis 94_M4241A]
 gi|306775519|ref|ZP_07413856.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu001]
 gi|306780669|ref|ZP_07419006.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu002]
 gi|306784070|ref|ZP_07422392.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu003]
 gi|306788431|ref|ZP_07426753.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu004]
 gi|306792760|ref|ZP_07431062.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu005]
 gi|306797164|ref|ZP_07435466.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu006]
 gi|306803043|ref|ZP_07439711.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu008]
 gi|306807237|ref|ZP_07443905.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu007]
 gi|306967434|ref|ZP_07480095.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu009]
 gi|307079339|ref|ZP_07488509.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu011]
 gi|307083904|ref|ZP_07493017.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu012]
 gi|313658214|ref|ZP_07815094.1| ribonuclease PH [Mycobacterium tuberculosis KZN V2475]
 gi|1710618|sp|Q10628|RNPH_MYCTU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228291|sp|A1KID0|RNPH_MYCBP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228295|sp|A5U240|RNPH_MYCTA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808595|sp|C1AMY5|RNPH_MYCBT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|1419043|emb|CAA99973.1| PROBABLE RIBONUCLEASE RPHA (RNase PH) (tRNA nucleotidyltransferase)
           [Mycobacterium tuberculosis H37Rv]
 gi|13880990|gb|AAK45646.1| ribonuclease PH [Mycobacterium tuberculosis CDC1551]
 gi|121492918|emb|CAL71389.1| Probable ribonuclease rphA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|134149750|gb|EBA41795.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148505281|gb|ABQ73090.1| ribonuclease PH [Mycobacterium tuberculosis H37Ra]
 gi|148721088|gb|ABR05713.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis F11]
 gi|224772858|dbj|BAH25664.1| ribonuclease [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253321115|gb|ACT25718.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 1435]
 gi|289415701|gb|EFD12941.1| ribonuclease PH [Mycobacterium tuberculosis T46]
 gi|289419893|gb|EFD17094.1| ribonuclease rphA [Mycobacterium tuberculosis CPHL_A]
 gi|289439500|gb|EFD21993.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 605]
 gi|289543107|gb|EFD46755.1| ribonuclease rphA [Mycobacterium tuberculosis T17]
 gi|289685620|gb|EFD53108.1| ribonuclease PH [Mycobacterium tuberculosis 02_1987]
 gi|289690483|gb|EFD57912.1| ribonuclease rphA [Mycobacterium tuberculosis T92]
 gi|289694009|gb|EFD61438.1| ribonuclease rphA [Mycobacterium tuberculosis EAS054]
 gi|289709007|gb|EFD73023.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis GM 1503]
 gi|289713009|gb|EFD77021.1| ribonuclease rphA [Mycobacterium tuberculosis T85]
 gi|298494641|gb|EFI29935.1| ribonuclease PH [Mycobacterium tuberculosis 94_M4241A]
 gi|308215991|gb|EFO75390.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu001]
 gi|308326498|gb|EFP15349.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu002]
 gi|308331139|gb|EFP19990.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu003]
 gi|308334980|gb|EFP23831.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu004]
 gi|308338786|gb|EFP27637.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu005]
 gi|308342427|gb|EFP31278.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu006]
 gi|308346338|gb|EFP35189.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu007]
 gi|308350261|gb|EFP39112.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu008]
 gi|308354910|gb|EFP43761.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu009]
 gi|308362791|gb|EFP51642.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu011]
 gi|308366438|gb|EFP55289.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu012]
 gi|323720157|gb|EGB29260.1| ribonuclease rphA [Mycobacterium tuberculosis CDC1551A]
 gi|326902963|gb|EGE49896.1| ribonuclease rphA [Mycobacterium tuberculosis W-148]
 gi|328459358|gb|AEB04781.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 4207]
          Length = 259

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 110/238 (46%), Positives = 158/238 (66%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  ++   GS L++FG T +L TA++ E VP W + T  GW+TA
Sbjct: 4   REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R  RE+V GR  GR+QEI R+IGR+LR+ +DL+ALG   I IDCDV+QA
Sbjct: 64  EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVTYLS-AAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VE+QG+ E ATF++     +L++A      L   Q+D ++
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240


>gi|312139208|ref|YP_004006544.1| ribonuclease ph rpha [Rhodococcus equi 103S]
 gi|325673486|ref|ZP_08153177.1| tRNA nucleotidyltransferase [Rhodococcus equi ATCC 33707]
 gi|311888547|emb|CBH47859.1| ribonuclease PH RphA [Rhodococcus equi 103S]
 gi|325555507|gb|EGD25178.1| tRNA nucleotidyltransferase [Rhodococcus equi ATCC 33707]
          Length = 260

 Score =  215 bits (547), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 106/239 (44%), Positives = 159/239 (66%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++RE+ +TR  + +  GS LV+FG+T ++ TA++EE VP W + +  GW+TA
Sbjct: 4   REDGRTDDELREVRITRGFTNHPAGSVLVEFGNTRVMCTASVEEGVPRWRKGSGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V G+ GGR+QEI R++GR+LR+ +DL+A+G   I IDCDV+QA
Sbjct: 64  EYAMLPAATHTRSGRESVKGKVGGRTQEISRLVGRSLRACIDLAAIGENTIAIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + +    Q +   +AA+S G++ G   +DL Y E
Sbjct: 124 DGGTRTAAITGAYVALVDAVTYLR-AAGRLADPQPISCAIAAVSVGVVDGRVRLDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  +VD N V TD+G +VE+QG+ E ATF +     +L+ A      L  +Q+  ++ 
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFAIQQAALAE 241


>gi|240170903|ref|ZP_04749562.1| ribonuclease PH [Mycobacterium kansasii ATCC 12478]
          Length = 259

 Score =  215 bits (547), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 108/238 (45%), Positives = 157/238 (65%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  ++   GS L++FG T +L TA++ E VP W + +  GW+TA
Sbjct: 4   REDGRLDDELRPVVITRGFTENPAGSVLIEFGRTKVLCTASVTEGVPRWRKGSGVGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V GR GGR+QEI R++GR+LR+ +DL+ALG   I +DCDV+QA
Sbjct: 64  EYAMLPSATHTRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAVDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AAIS G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVTYLA-AAGKLSDPRPLSCAIAAISVGVVDGRIRVDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VE+QG+ E ATF +     +L++A      L   Q++ ++
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDMALGACDKLFAAQREALA 240


>gi|226360555|ref|YP_002778333.1| ribonuclease PH [Rhodococcus opacus B4]
 gi|226239040|dbj|BAH49388.1| ribonuclease PH [Rhodococcus opacus B4]
          Length = 262

 Score =  215 bits (547), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 106/234 (45%), Positives = 158/234 (67%), Gaps = 1/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++RE+ +TR  + +  GS LV+FG+T ++ TA++E+ VP W + T  GW+TA
Sbjct: 4   REDGRADDELREVKITRGFTTHPAGSVLVEFGNTRVMCTASVEDGVPRWRQGTGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V G+ GGR+QEI R++GR+LR+ +DL+A+G   I +DCDV+QA
Sbjct: 64  EYAMLPAATHTRSGRESVKGKVGGRTQEISRLVGRSLRACIDLAAIGENTIALDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + +    Q +   +AA+S G++ G   +DL Y E
Sbjct: 124 DGGTRTAAITGAYVALVDAVTYLR-AAGRLADPQPISCGIAAVSVGVVDGRVRLDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  +VD N V TD+G +VE+QG+ E ATF +     +L+ A      L ++QK
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFEIQK 236


>gi|160877892|pdb|3B4T|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
           The Mycobacterium Tuberculosis Structural Genomics
           Consortium Target Rv1340
 gi|160877893|pdb|3B4T|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
           The Mycobacterium Tuberculosis Structural Genomics
           Consortium Target Rv1340
 gi|160877894|pdb|3B4T|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
           The Mycobacterium Tuberculosis Structural Genomics
           Consortium Target Rv1340
 gi|160877895|pdb|3B4T|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
           The Mycobacterium Tuberculosis Structural Genomics
           Consortium Target Rv1340
 gi|160877896|pdb|3B4T|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
           The Mycobacterium Tuberculosis Structural Genomics
           Consortium Target Rv1340
 gi|160877897|pdb|3B4T|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
           The Mycobacterium Tuberculosis Structural Genomics
           Consortium Target Rv1340
          Length = 262

 Score =  215 bits (547), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 110/238 (46%), Positives = 158/238 (66%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  ++   GS L++FG T +L TA++ E VP W + T  GW+TA
Sbjct: 7   REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R  RE+V GR  GR+QEI R+IGR+LR+ +DL+ALG   I IDCDV+QA
Sbjct: 67  EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 127 DGGTRTAAITGAYVALADAVTYLS-AAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 185

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VE+QG+ E ATF++     +L++A      L   Q+D ++
Sbjct: 186 DSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 243


>gi|291166728|gb|EFE28774.1| ribonuclease PH/Ham1 protein [Filifactor alocis ATCC 35896]
          Length = 471

 Score =  215 bits (547), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 107/235 (45%), Positives = 160/235 (68%), Gaps = 6/235 (2%)

Query: 10  QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
           Q+R+I++   ++KYAEGS LV FGDT ++ TA++EEKVP +++ T  GW++AEY MLPRS
Sbjct: 6   QLRDINIETGINKYAEGSVLVSFGDTRVICTASVEEKVPAFLKGTGKGWVSAEYAMLPRS 65

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
           T  R KR++  G+  GR QEIQR+IGR+LR+ +D   LG R I IDCDVIQADGGTRTA+
Sbjct: 66  TEQRKKRDSSRGKVDGRGQEIQRLIGRSLRNAIDFDLLGERTIWIDCDVIQADGGTRTAS 125

Query: 130 ITGAWVALHDCLQHMEDCS--NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           I+G++VA+    + + D     +F +S     +++A+S G++ G  I+DL+Y  DS  DV
Sbjct: 126 ISGSFVAMAIACKQLYDKKMIEEFPISH----YISAVSVGIVNGKNILDLNYEFDSKADV 181

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           D N VM ++   VE+QG+AE   F +    ++L LA+    ++I+LQK  +  ++
Sbjct: 182 DLNVVMNENLEYVELQGTAEGVAFRRQQLDSLLTLAEIGCKEIIELQKTALGKQI 236


>gi|315655635|ref|ZP_07908533.1| tRNA nucleotidyltransferase [Mobiluncus curtisii ATCC 51333]
 gi|315489699|gb|EFU79326.1| tRNA nucleotidyltransferase [Mobiluncus curtisii ATCC 51333]
          Length = 257

 Score =  215 bits (547), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 113/239 (47%), Positives = 153/239 (64%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ +Q+RE++L        EG  LV  G+T +L +A+L E VP W +++  GW+TA
Sbjct: 7   RADGRRMDQLREVTLHMDWVSAPEGCVLVSCGNTRVLCSASLTEGVPRWRKDSGLGWVTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+  GR+ EI R+IGRALR+ VD +ALG   I IDCDV+QA
Sbjct: 67  EYAMLPRATDTRNTRESVKGKISGRTSEISRLIGRALRAAVDYAALGENTIAIDCDVLQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGAW+AL   +    D  + F      +  V AIS G++   P +DL Y E
Sbjct: 127 DGGTRTASITGAWIALQRAIAVGRD--SGFIPGNPTRDSVCAISVGIIDSIPRLDLPYEE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT SG +VEVQG+AE A FS+    A+L+LA+    DL +LQ+  + +
Sbjct: 185 DSRAETDMNVVMTGSGSLVEVQGTAEGAPFSRAELDALLDLAQAGCRDLTRLQRAAVDS 243


>gi|296139019|ref|YP_003646262.1| ribonuclease PH [Tsukamurella paurometabola DSM 20162]
 gi|296027153|gb|ADG77923.1| ribonuclease PH [Tsukamurella paurometabola DSM 20162]
          Length = 260

 Score =  215 bits (547), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 109/238 (45%), Positives = 158/238 (66%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R +++TR  ++   GS LV+FG+T +L TA++E  VP W R +  GW+TA
Sbjct: 4   RADGRADDELRPVTITRGFTQNPAGSVLVEFGNTKVLCTASVELGVPGWRRGSGQGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE+  G+ GGR+ EI R+IGR+LR+ +DL+ALG   I IDCDV+QA
Sbjct: 64  EYAMLPGATHERSRRESTKGKVGGRTHEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D + ++   + K    Q +   +AA+S G++ G   +DL Y E
Sbjct: 124 DGGTRTASITGAYVALCDAVTYL-GAAGKLTDPQPISCAIAAVSVGVVDGRVRLDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VEVQG+ E ATF++     ML+ A      L  +QK  ++
Sbjct: 183 DSRAEVDMNVVATDTGTLVEVQGTGEGATFARTTLDWMLDSALSGTEKLFAVQKQALA 240


>gi|148656132|ref|YP_001276337.1| ribonuclease PH [Roseiflexus sp. RS-1]
 gi|148568242|gb|ABQ90387.1| RNAse PH [Roseiflexus sp. RS-1]
          Length = 245

 Score =  215 bits (547), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 154/241 (63%), Gaps = 8/241 (3%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR    +R + +T     YAEGS L++ G+T +L TA++EE VP W+R  + GW+T
Sbjct: 2   VRNDGRAPADLRPVRITIDTYGYAEGSALIEMGNTRVLCTASVEEGVPQWLRGQQRGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQG--GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
            EY +LPRST  R +RE    R G  GR+QEIQR+IGRALR+ V L AL    + +DCDV
Sbjct: 62  GEYALLPRSTAQRTRRE----RNGVSGRTQEIQRLIGRALRAAVSLEALDGFTVTVDCDV 117

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QADGGTRTA+ITG +VAL   L  +   +     S  L+  VAA+S G + G  ++DLD
Sbjct: 118 LQADGGTRTASITGGYVALALALHRL--TAEGRLASNPLQRAVAAVSAGYVAGCALLDLD 175

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y EDS  D+D N V+TD G IVEVQ +AE    S+  F A+++LA D I  L+ +Q+  +
Sbjct: 176 YSEDSVADMDCNLVLTDDGAIVEVQSTAEARAVSRAEFDALIDLATDGIRRLLAIQRAAL 235

Query: 239 S 239
           +
Sbjct: 236 A 236


>gi|308378909|ref|ZP_07484288.2| ribonuclease rphA [Mycobacterium tuberculosis SUMu010]
 gi|308358854|gb|EFP47705.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu010]
          Length = 296

 Score =  215 bits (547), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 110/238 (46%), Positives = 158/238 (66%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  ++   GS L++FG T +L TA++ E VP W + T  GW+TA
Sbjct: 41  REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 100

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R  RE+V GR  GR+QEI R+IGR+LR+ +DL+ALG   I IDCDV+QA
Sbjct: 101 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 160

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 161 DGGTRTAAITGAYVALADAVTYLS-AAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 219

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VE+QG+ E ATF++     +L++A      L   Q+D ++
Sbjct: 220 DSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 277


>gi|294787659|ref|ZP_06752903.1| tRNA nucleotidyltransferase [Simonsiella muelleri ATCC 29453]
 gi|294483952|gb|EFG31635.1| tRNA nucleotidyltransferase [Simonsiella muelleri ATCC 29453]
          Length = 245

 Score =  215 bits (547), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 116/234 (49%), Positives = 162/234 (69%), Gaps = 4/234 (1%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  N++REI++      +A+GS L+  G+T ++ TAT+++ VP ++R    GW+TAEYGM
Sbjct: 12  RAANELREITIQPNFLPHADGSVLISCGNTKVICTATIDQNVPSFLRGKGEGWVTAEYGM 71

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST +R+KREA SG+Q GR+QEIQR+IGR+LR+ VD+  LG RQI+IDCDVIQADGGT
Sbjct: 72  LPASTQSRMKREAASGKQSGRTQEIQRLIGRSLRACVDMKKLGERQILIDCDVIQADGGT 131

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDST 184
           RT +ITGA+VAL   +Q M    N  +L +  L G VAA+S G++ G P++DLDY EDS 
Sbjct: 132 RTTSITGAFVALKMAIQKM---LNDGRLPETPLIGSVAAVSVGVVGGVPLLDLDYPEDSN 188

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            D D N VM ++  I+E+QG+AE A FS      ++ L +  I  L +LQ+  +
Sbjct: 189 CDSDVNLVMLNADKIIEIQGTAEGAAFSLAELQTLIALGQKGITQLAQLQQKAL 242


>gi|154507583|ref|ZP_02043225.1| hypothetical protein ACTODO_00063 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797217|gb|EDN79637.1| hypothetical protein ACTODO_00063 [Actinomyces odontolyticus ATCC
           17982]
          Length = 235

 Score =  215 bits (547), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 107/220 (48%), Positives = 148/220 (67%)

Query: 16  LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           +TR  S   EGS L++FG+T +L  A+  E VP W R++  GW+T EY MLPR+T  R  
Sbjct: 1   MTRGWSGTGEGSVLIEFGNTRVLCVASFTEGVPRWKRDSGEGWVTGEYSMLPRATEQRSS 60

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE+V G+ GGR+QEI R+IGR+LR +VD+SALG   I++DCDV++ADGGTRTAAITGA+V
Sbjct: 61  RESVKGKVGGRTQEISRLIGRSLRGIVDVSALGENTIVLDCDVLRADGGTRTAAITGAYV 120

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
           AL D +   ++       ++VL   ++AIS G++ G P++DL Y ED   + D N V T 
Sbjct: 121 ALADAVSWAKEQGILKPSAKVLTDSISAISVGVIDGTPMLDLPYVEDVRAETDMNVVQTG 180

Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           SG  +EVQG+AE A F++D    +L+LA    A L + QK
Sbjct: 181 SGRFIEVQGTAEHAPFNRDELNELLDLATLGNARLAEAQK 220


>gi|255659135|ref|ZP_05404544.1| tRNA nucleotidyltransferase [Mitsuokella multacida DSM 20544]
 gi|260848582|gb|EEX68589.1| tRNA nucleotidyltransferase [Mitsuokella multacida DSM 20544]
          Length = 248

 Score =  214 bits (546), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 112/240 (46%), Positives = 157/240 (65%), Gaps = 9/240 (3%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  + +R   + R   KY  GS L++ G+T ++  A++E++VP ++R T  GWI AEY +
Sbjct: 7   RTADALRPYEMHRHFQKYPAGSVLIEMGNTKVICAASIEDRVPFFLRGTGEGWIAAEYSL 66

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP +T  R +REAV G+Q GR+QEI+R+IGR+LRSVVD  ALG R I+IDCDVIQADGGT
Sbjct: 67  LPSATETRTQREAVRGKQSGRTQEIERLIGRSLRSVVDTKALGERTIMIDCDVIQADGGT 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVL--KGHVAAISCGMLC-GYPIVDLDYGED 182
           RTA+ITGA+VAL      +E C++ ++  ++   K  ++AIS G+   G PI+DL Y ED
Sbjct: 127 RTASITGAFVAL------VEACASFYEKGKIFPVKDFLSAISVGVSHEGVPILDLCYEED 180

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           S   VD N VMT  G  VEVQG+ E   F+ +    +L L +    +LI  +KDV+  E+
Sbjct: 181 SRAIVDMNVVMTGVGRFVEVQGTGEGRPFTHEELGELLALGEKGCRELISYEKDVLGGEL 240


>gi|145296503|ref|YP_001139324.1| ribonuclease PH [Corynebacterium glutamicum R]
 gi|166228277|sp|A4QGQ6|RNPH_CORGB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|140846423|dbj|BAF55422.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 245

 Score =  214 bits (546), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 108/234 (46%), Positives = 154/234 (65%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++QMR + +TR  +    GS LV+FG+T ++ TA++E  VP + R++  GW+TA
Sbjct: 9   RFDGRAQDQMRAVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE+++G+  GR+ EI R+IGR+LR+ VDLS LG   I IDCDV+QA
Sbjct: 69  EYAMLPAATAERNRRESMAGKVKGRTHEISRLIGRSLRAAVDLSQLGENTIAIDCDVLQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D ++ +++          L   VAA+S G++ G   +DL Y E
Sbjct: 129 DGGTRTASITGAYVALADAIKVLQE--RGVVPGSPLLAPVAAVSVGLVDGNVCLDLPYEE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  DVD N VMT+ G  VE+QG+ E  TF++     ML+ A+    +L+  QK
Sbjct: 187 DSRADVDLNVVMTEHGEFVEIQGTGEETTFTRAQLNDMLDYAEKGCRELVAAQK 240


>gi|108758625|ref|YP_630239.1| ribonuclease PH [Myxococcus xanthus DK 1622]
 gi|122389586|sp|Q1DAT4|RNPH_MYXXD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|108462505|gb|ABF87690.1| ribonuclease PH [Myxococcus xanthus DK 1622]
          Length = 237

 Score =  214 bits (546), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 114/238 (47%), Positives = 154/238 (64%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R    +R + LT  VS+YAEGS  V+FG T +L T + EE+VP  +     GW+T
Sbjct: 1   MRSFQRGALDLRPVVLTPGVSRYAEGSVQVEFGHTKVLVTCSTEERVPPHLMGKGSGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +RE+  G+Q GR+ EIQR+IGR+LR+ VDLS LG R + +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNQRESAKGKQTGRTMEIQRLIGRSLRAAVDLSTLGPRTLTLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL   L+ ++      +L ++    +AA+S G++ G   VDLDY 
Sbjct: 121 ADGGTRTASITGAYVALVLALRSLQKAGTISKLPKLTP--LAAVSVGIVKGEVRVDLDYD 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDST DVD N V T  G +VE+QG+AE   F +    AM++     I  L   Q  V+
Sbjct: 179 EDSTADVDLNLVATADGRMVELQGTAEHQLFDRKALDAMVDGGLAAIQKLTAAQAQVL 236


>gi|260654137|ref|ZP_05859627.1| tRNA nucleotidyltransferase [Jonquetella anthropi E3_33 E1]
 gi|260631122|gb|EEX49316.1| tRNA nucleotidyltransferase [Jonquetella anthropi E3_33 E1]
          Length = 250

 Score =  214 bits (546), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 107/238 (44%), Positives = 162/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R +GR    +R+ISLT  V+++AEGSCLV++G+T +L TA+++ KVP ++R +  GW+T
Sbjct: 6   LRNNGRGACDLRKISLTLDVNRWAEGSCLVEWGETKVLCTASVDNKVPPFLRGSGQGWVT 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  RE+V GRQ GRS EI R+IGR+LR+ VDL+ LG   + +DCDV+Q
Sbjct: 66  AEYAMLPRATSSRTVRESVKGRQSGRSMEISRLIGRSLRASVDLAQLGELTVTLDCDVLQ 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA++AL   ++ +   +     +   +  VAA+S G + G  + DLDY 
Sbjct: 126 ADGGTRTASITGAFLALAGAVRSL--IAGGRIAASPFRMPVAAVSIGKVDGQILTDLDYS 183

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  +VD N V   +G  +E+QG+ E  TFS+     +L+  ++ +A + +LQ+  +
Sbjct: 184 EDSRAEVDFNVVGNGNGVFIELQGTGEGGTFSRSELNELLDCGENALAQITELQRKTM 241


>gi|315656450|ref|ZP_07909339.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315493009|gb|EFU82611.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 259

 Score =  214 bits (546), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 113/239 (47%), Positives = 153/239 (64%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ +Q+RE++L        EG  LV  G+T +L +A+L E VP W +++  GW+TA
Sbjct: 9   RADGRRMDQLREVTLHMDWVSAPEGCVLVSCGNTRVLCSASLTEGVPRWRKDSGLGWVTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+  GR+ EI R+IGRALR+ VD +ALG   I IDCDV+QA
Sbjct: 69  EYAMLPRATDTRNTRESVKGKISGRTSEISRLIGRALRAAVDYAALGENTIAIDCDVLQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGAW+AL   +    D  + F      +  V AIS G++   P +DL Y E
Sbjct: 129 DGGTRTASITGAWIALQCAIAVGRD--SGFIPGNPTRDSVCAISVGIIDSIPRLDLPYEE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT SG +VEVQG+AE A FS+    A+L+LA+    DL +LQ+  + +
Sbjct: 187 DSRAETDMNVVMTGSGSLVEVQGTAEGAPFSRAELDALLDLAQAGCRDLTRLQRAAVDS 245


>gi|260889914|ref|ZP_05901177.1| tRNA nucleotidyltransferase [Leptotrichia hofstadii F0254]
 gi|260860520|gb|EEX75020.1| tRNA nucleotidyltransferase [Leptotrichia hofstadii F0254]
          Length = 239

 Score =  214 bits (546), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 110/234 (47%), Positives = 159/234 (67%), Gaps = 4/234 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R + R+ ++MRE+ +T+    + EGS L++FG+T ++  AT+EEK+P W++ T  GW+T
Sbjct: 9   VRKNNRKNDEMREVKVTKNYIIHPEGSVLMEFGNTKVICNATVEEKIPRWLKGTGSGWVT 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  RV+RE+  G+  GR+ EIQR+IGRALR+ +DL  LG R I+IDCDVIQ
Sbjct: 69  AEYSMLPRATNARVQRESTKGKLSGRTMEIQRLIGRALRAAIDLEKLGERTIMIDCDVIQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA++AL   ++ + D   + +L  + +K  VAAIS G +    ++DL+Y
Sbjct: 129 ADGGTRTASITGAYLALELAIEKLID---EGKLKDIPIKSKVAAISVGKVRNELLLDLEY 185

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
            EDS  DVD N VM D G  +E+QG+ E ATF+       + L+K+    L  L
Sbjct: 186 EEDSRADVDMNIVMNDKGEFIELQGTGEEATFTHAELLKFIELSKNAFDKLFSL 239


>gi|328953246|ref|YP_004370580.1| Ribonuclease PH [Desulfobacca acetoxidans DSM 11109]
 gi|328453570|gb|AEB09399.1| Ribonuclease PH [Desulfobacca acetoxidans DSM 11109]
          Length = 255

 Score =  214 bits (545), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 115/241 (47%), Positives = 158/241 (65%), Gaps = 8/241 (3%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R++ +T R    AEG+ L+  G T ++ TAT+EE+VP +++++  GW+T
Sbjct: 12  IRSEGRRLDELRQVKITPRYLSQAEGAVLISLGRTWVICTATVEERVPAFLQDSGQGWVT 71

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  R A  G+   RSQEIQR+IGR+LR+VVDL ALG R I++DCDVIQ
Sbjct: 72  AEYDMLPRATHSRHPRSANLGKPSSRSQEIQRLIGRSLRAVVDLDALGERTIVLDCDVIQ 131

Query: 121 ADGGTRTAAITGAWVALHDC---LQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           ADGGTRTAAITGA+VAL +    LQ  E  +    L Q     VAA+S G+     +VDL
Sbjct: 132 ADGGTRTAAITGAFVALCEALAGLQRQEIIATLPVLDQ-----VAAVSVGLANDQILVDL 186

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           DY EDS  +VDANFV+T  G +VEVQ + ER  F       ML  A+  +  L + Q+  
Sbjct: 187 DYQEDSRAEVDANFVVTGRGQLVEVQATGERGPFRPALLLEMLERAQPALQRLRQAQEKA 246

Query: 238 I 238
           +
Sbjct: 247 L 247


>gi|261418318|ref|YP_003252000.1| ribonuclease PH [Geobacillus sp. Y412MC61]
 gi|319767722|ref|YP_004133223.1| ribonuclease PH [Geobacillus sp. Y412MC52]
 gi|261374775|gb|ACX77518.1| ribonuclease PH [Geobacillus sp. Y412MC61]
 gi|317112588|gb|ADU95080.1| ribonuclease PH [Geobacillus sp. Y412MC52]
          Length = 256

 Score =  214 bits (545), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 117/236 (49%), Positives = 153/236 (64%), Gaps = 3/236 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR   ++R + +     K+AEGS L++ GDT ++ TAT+EEKVP ++R    GWIT
Sbjct: 1   MRADGRSSCELRPVHIHPHYMKHAEGSVLIEIGDTKVICTATVEEKVPSFMRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+  GR+ EIQR+IGRALRSVVDL  LG R I IDCDVIQ
Sbjct: 61  AEYGMLPRATEQRNVREASKGKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VAL   L  + +      L   ++  +AA S G+   + ++ DLDY
Sbjct: 121 ADGGTRTASITGAYVALVLALAKLVEEGKLEALP--IRDFLAATSVGIDPEHGVILDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            ED+   VD N VMT +G  VE+QG+ E A FS+     +L  A+  I  LI +Q+
Sbjct: 179 NEDARAKVDMNVVMTGAGQFVEIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQR 234


>gi|291456091|ref|ZP_06595481.1| tRNA nucleotidyltransferase [Bifidobacterium breve DSM 20213]
 gi|291382500|gb|EFE90018.1| tRNA nucleotidyltransferase [Bifidobacterium breve DSM 20213]
          Length = 258

 Score =  214 bits (545), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 103/224 (45%), Positives = 150/224 (66%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R + +TR  +   EGS L++ G+T ++ TAT    VP W +++  GW+T
Sbjct: 18  IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 77

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR V+D+ ALG  QI +DCDV+Q
Sbjct: 78  AEYAMLPRATSERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 137

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA+VAL D +   E   +     +VLK +V+A+S G++ G P++DL Y 
Sbjct: 138 ADGGTRTASVTGAYVALVDAVNWAEKHHHIKSADKVLKDYVSAVSVGVINGTPMLDLPYI 197

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           EDS    D N  MT SG  +E+QG+AE   F++     +L+LA+
Sbjct: 198 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAE 241


>gi|56381043|dbj|BAD76951.1| ribonuclease PH [Geobacillus kaustophilus HTA426]
          Length = 257

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 117/236 (49%), Positives = 153/236 (64%), Gaps = 3/236 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR   ++R + +     K+AEGS L++ GDT ++ TAT+EEKVP ++R    GWIT
Sbjct: 2   MRADGRSSCELRPVHIHPHYMKHAEGSVLIEVGDTKVICTATVEEKVPSFMRGGGKGWIT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+  GR+ EIQR+IGRALRSVVDL  LG R I IDCDVIQ
Sbjct: 62  AEYGMLPRATEQRNVREASKGKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VAL   L  + +      L   ++  +AA S G+   + ++ DLDY
Sbjct: 122 ADGGTRTASITGAYVALVLALAKLVEEGRLEALP--IRDFLAATSVGIDPEHGVILDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            ED+   VD N VMT +G  VE+QG+ E A FS+     +L  A+  I  LI +Q+
Sbjct: 180 NEDARAKVDMNVVMTGAGQFVEIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQR 235


>gi|161551792|ref|YP_148519.2| ribonuclease PH [Geobacillus kaustophilus HTA426]
 gi|61215778|sp|Q5KWI5|RNPH_GEOKA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
          Length = 256

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 117/236 (49%), Positives = 153/236 (64%), Gaps = 3/236 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR   ++R + +     K+AEGS L++ GDT ++ TAT+EEKVP ++R    GWIT
Sbjct: 1   MRADGRSSCELRPVHIHPHYMKHAEGSVLIEVGDTKVICTATVEEKVPSFMRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+  GR+ EIQR+IGRALRSVVDL  LG R I IDCDVIQ
Sbjct: 61  AEYGMLPRATEQRNVREASKGKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VAL   L  + +      L   ++  +AA S G+   + ++ DLDY
Sbjct: 121 ADGGTRTASITGAYVALVLALAKLVEEGRLEALP--IRDFLAATSVGIDPEHGVILDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            ED+   VD N VMT +G  VE+QG+ E A FS+     +L  A+  I  LI +Q+
Sbjct: 179 NEDARAKVDMNVVMTGAGQFVEIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQR 234


>gi|297529172|ref|YP_003670447.1| ribonuclease PH [Geobacillus sp. C56-T3]
 gi|297252424|gb|ADI25870.1| ribonuclease PH [Geobacillus sp. C56-T3]
          Length = 460

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 117/236 (49%), Positives = 153/236 (64%), Gaps = 3/236 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR   ++R + +     K+AEGS L++ GDT ++ TAT+EEKVP ++R    GWIT
Sbjct: 1   MRADGRSSCELRPVHIHPHYMKHAEGSVLIEIGDTKVICTATVEEKVPSFMRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+  GR+ EIQR+IGRALRSVVDL  LG R I IDCDVIQ
Sbjct: 61  AEYGMLPRATEQRNVREASKGKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VAL   L  + +      L   ++  +AA S G+   + ++ DLDY
Sbjct: 121 ADGGTRTASITGAYVALVLALAKLVEEGKLEALP--IRDFLAATSVGIDPEHGVILDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            ED+   VD N VMT +G  VE+QG+ E A FS+     +L  A+  I  LI +Q+
Sbjct: 179 NEDARAKVDMNVVMTGAGQFVEIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQR 234


>gi|152967706|ref|YP_001363490.1| ribonuclease PH [Kineococcus radiotolerans SRS30216]
 gi|151362223|gb|ABS05226.1| ribonuclease PH [Kineococcus radiotolerans SRS30216]
          Length = 248

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 107/222 (48%), Positives = 144/222 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R +++TR    +AEGS LV+FG T +L  A+  E VP W + +  GW+TA
Sbjct: 10  RADGRAVDELRPVTITRNWLDHAEGSVLVEFGRTRVLCAASFTEGVPRWRKGSGQGWVTA 69

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+VVD   LG   I++DCDV+QA
Sbjct: 70  EYAMLPRATNTRGDRESVKGKIGGRTHEISRLIGRSLRAVVDTKQLGENTIVLDCDVLQA 129

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAA+TGA+VAL D +             Q L G V+AIS G++ G P++DL Y E
Sbjct: 130 DGGTRTAAVTGAYVALADAISWARGQGIVKASRQPLTGSVSAISVGVVDGVPVLDLPYVE 189

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           D   + D N V+T  G  VEVQG+AE   F +    A+L+LA
Sbjct: 190 DVRAETDMNVVVTGDGRFVEVQGTAEGTPFDRAELDALLDLA 231


>gi|134097802|ref|YP_001103463.1| ribonuclease PH [Saccharopolyspora erythraea NRRL 2338]
 gi|166228314|sp|A4F913|RNPH_SACEN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|133910425|emb|CAM00538.1| ribonuclease PH [Saccharopolyspora erythraea NRRL 2338]
          Length = 251

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 108/238 (45%), Positives = 155/238 (65%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++ +RE+ +TR    +  GS LV+FG T +L  A+++E VP W   +  GW+TA
Sbjct: 3   RADGRSDDALREVRITRGYQDWPAGSVLVEFGRTRVLCAASVQEGVPRWRAGSGLGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R  RE+V GR GGR+ EI R++GR+LR+ +DL+ALG   I +DCDVIQA
Sbjct: 63  EYAMLPSSTNTRSARESVKGRIGGRTHEISRLVGRSLRACIDLAALGENTIALDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +   + +    + L   +AA+S G++ G   +DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAITWLS-AAGRLTDPKPLSCSIAAVSVGVVDGRVRLDLPYEE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD G +VEVQG+ E ATF++     M++ A    ++L ++Q + ++
Sbjct: 182 DSRAEVDMNVVATDHGTLVEVQGTGEGATFTRSTMDKMIDFALAGCSELSRIQSEALA 239


>gi|296118694|ref|ZP_06837270.1| tRNA nucleotidyltransferase [Corynebacterium ammoniagenes DSM
           20306]
 gi|295968183|gb|EFG81432.1| tRNA nucleotidyltransferase [Corynebacterium ammoniagenes DSM
           20306]
          Length = 242

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 107/234 (45%), Positives = 157/234 (67%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R + +TR  +    GS LV+FG+T ++ TA++E+ VP + +++  GW+TA
Sbjct: 6   RADGRDLDQLRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEQGVPRFKKDSGEGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R+ RE++ G+  GR+ EI R+IGR+LR+ VDLSALG   I +DCDV+QA
Sbjct: 66  EYAMLPSATHDRMPRESMKGKVKGRTHEISRLIGRSLRAAVDLSALGENTIQLDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +++        + L   +AA+S GM+ G   +DL Y E
Sbjct: 126 DGGTRTASITGAYVALADAIAVLKE--QGVVPGEPLLQPIAAVSVGMVEGNVCLDLPYEE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  +VD N VM +SG+ VEVQG+ E   F +D   AML++A+    +LI  Q+
Sbjct: 184 DSRAEVDLNVVMQESGNFVEVQGTGENGLFGRDELNAMLDVAQKGCVELIAAQR 237


>gi|111018437|ref|YP_701409.1| ribonuclease PH [Rhodococcus jostii RHA1]
 gi|110817967|gb|ABG93251.1| tRNA nucleotidyltransferase [Rhodococcus jostii RHA1]
          Length = 262

 Score =  213 bits (543), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/234 (44%), Positives = 158/234 (67%), Gaps = 1/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++RE+ +TR  + +  GS LV+FG+T ++ TA++E+ VP W + +  GW+TA
Sbjct: 4   REDGRADDELREVKITRGFTTHPAGSVLVEFGNTRVMCTASVEDGVPRWRQGSGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V G+ GGR+QEI R++GR+LR+ +DL+A+G   I +DCDV+QA
Sbjct: 64  EYAMLPAATHTRSGRESVKGKVGGRTQEISRLVGRSLRACIDLAAIGENTIALDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + +    Q +   +AA+S G++ G   +DL Y E
Sbjct: 124 DGGTRTAAITGAYVALVDAVTYLR-AAGRLADPQPISCGIAAVSVGVVDGRVRLDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  +VD N V TD+G +VE+QG+ E ATF +     +L+ A      L ++QK
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFEIQK 236


>gi|23308945|ref|NP_601703.2| ribonuclease PH [Corynebacterium glutamicum ATCC 13032]
 gi|62391341|ref|YP_226743.1| ribonuclease PH [Corynebacterium glutamicum ATCC 13032]
 gi|24638170|sp|Q8NMR4|RNPH_CORGL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|21325272|dbj|BAB99894.1| RNase PH [Corynebacterium glutamicum ATCC 13032]
 gi|41326682|emb|CAF21164.1| PROBABLE RIBONUCLEASE PH [Corynebacterium glutamicum ATCC 13032]
          Length = 245

 Score =  213 bits (543), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 108/234 (46%), Positives = 154/234 (65%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++QMR + +TR  +    GS LV+FG+T ++ TA++E  VP + R++  GW+TA
Sbjct: 9   RFDGRAQDQMRAVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE+++G+  GR+ EI R+IGR+LR+ VDLS LG   I IDCDV+QA
Sbjct: 69  EYAMLPAATAERNRRESMAGKVKGRTHEISRLIGRSLRAAVDLSQLGENTIAIDCDVLQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D ++ +++          L   VAA+S G++ G   +DL Y E
Sbjct: 129 DGGTRTASITGAYVALADAIKVLQE--RGVVPGSPLLAPVAAVSVGLVDGNVCLDLPYEE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  DVD N VMT+ G  VE+QG+ E  TF++     ML+ A+    +L+  QK
Sbjct: 187 DSRADVDLNVVMTEHGEFVEIQGTGEETTFTRAQLNDMLDHAEKGCRELVAAQK 240


>gi|332749902|gb|EGJ80314.1| ribonuclease PH [Shigella flexneri K-671]
          Length = 211

 Score =  213 bits (543), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 112/212 (52%), Positives = 145/212 (68%), Gaps = 2/212 (0%)

Query: 29  LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
           LV+FGDT +L TA++EE VP +++    GWITAEYGMLPRST  R  REA  G+QGGR+ 
Sbjct: 2   LVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTM 61

Query: 89  EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
           EIQR+I RALR+ VDL ALG   I +DCDV+QADGGTRTA+ITGA VAL D LQ +    
Sbjct: 62  EIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACVALADALQKL--VE 119

Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
           N    +  +KG VAA+S G++ G  I DL+Y EDS  + D N VMT+ G I+EVQG+AE 
Sbjct: 120 NGKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEG 179

Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 180 EPFTHEELLTLLALARGGIESIVATQKAALAN 211


>gi|327439325|dbj|BAK15690.1| RNase PH [Solibacillus silvestris StLB046]
          Length = 250

 Score =  213 bits (543), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 109/236 (46%), Positives = 157/236 (66%), Gaps = 3/236 (1%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  N++R + +      + EGS L+  G+T ++ TAT+EEKVP ++R    GWITAEY M
Sbjct: 7   RAVNELRPVQIDNNYLMHPEGSVLITVGNTKVICTATIEEKVPGFLRGQGKGWITAEYSM 66

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LPR+T  R +RE+ +G+  GR+ EIQR+IGRALR+VVDL ALG + + IDCDVIQADGGT
Sbjct: 67  LPRATEQRTRRESSAGKVSGRTMEIQRLIGRALRAVVDLEALGEKTVWIDCDVIQADGGT 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDST 184
           RTA+ITGA+VA+   +  +    +K  ++  +  ++AA S G L     ++DL+Y EDS 
Sbjct: 127 RTASITGAFVAMTQAIAKL--GVDKPFVNFPVTDYLAATSVGKLENIGAVLDLNYVEDSA 184

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             VD N +MT +G  VE+QG+ E ATFS+     +L+L +  IA LI++QK  + +
Sbjct: 185 AQVDMNVIMTGAGEFVELQGTGEEATFSRSELNELLDLGEAGIAQLIEMQKTALGD 240


>gi|292669539|ref|ZP_06602965.1| tRNA nucleotidyltransferase [Selenomonas noxia ATCC 43541]
 gi|292648748|gb|EFF66720.1| tRNA nucleotidyltransferase [Selenomonas noxia ATCC 43541]
          Length = 248

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 111/238 (46%), Positives = 158/238 (66%), Gaps = 9/238 (3%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R+ +Q+R + + R   +Y  GS LV+ G T ++  AT+EE+VP +++ +  GW+TAEY M
Sbjct: 7   RRTDQLRPVHIERGYQRYPAGSALVETGHTRVVCAATVEERVPFFLKGSGTGWVTAEYAM 66

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP +   R  REAV GRQ GR+QEIQR+IGRALR+VVD+  LG R I IDCDV+QADGGT
Sbjct: 67  LPGAGAERTAREAVRGRQSGRTQEIQRLIGRALRAVVDMKVLGERTIHIDCDVLQADGGT 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVL--KGHVAAISCGMLC-GYPIVDLDYGED 182
           RTA++TGA+VAL      +E C+  +    +   + +VAA+S G+   G P++D+ Y ED
Sbjct: 127 RTASVTGAFVAL------VEACATFYTKHGIFPVRDYVAAVSVGIDTEGTPLLDICYEED 180

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           S+  VD N VMT +G  VEVQG+ E  +FS+    A+L+L +  I +LI+ QK  +  
Sbjct: 181 SSAMVDMNLVMTGAGEFVEVQGTGEGRSFSRAEMNALLDLGERGIRELIEHQKTALGE 238


>gi|313835876|gb|EFS73590.1| ribonuclease PH [Propionibacterium acnes HL037PA2]
 gi|314927124|gb|EFS90955.1| ribonuclease PH [Propionibacterium acnes HL044PA1]
 gi|314970767|gb|EFT14865.1| ribonuclease PH [Propionibacterium acnes HL037PA3]
 gi|328906032|gb|EGG25807.1| tRNA nucleotidyltransferase [Propionibacterium sp. P08]
          Length = 252

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 110/237 (46%), Positives = 155/237 (65%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ + R     AEGS LV FG T +L  A++ E VP W + +  GW+TA
Sbjct: 14  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 73

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+ GGR+ EI R++GR+LR+V+D  ALG   II+DCDV+QA
Sbjct: 74  EYEMLPRATNERSGRESRRGKIGGRTHEISRLVGRSLRAVIDDKALGENTIILDCDVLQA 133

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +        + + + G V AIS G++ G P++DL Y E
Sbjct: 134 DGGTRTASITGAYVALVDAVNWLR--KRGGLVGEPITGSVQAISVGVVGGVPMLDLAYEE 191

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VM+ SG  VE+QG+AE A F++D    +L+LA      L + Q +V+
Sbjct: 192 DSRADTDMNVVMSGSGDFVEIQGTAEGAPFNRDLLNELLDLAAGGCVTLKQAQSEVL 248


>gi|169628575|ref|YP_001702224.1| ribonuclease PH [Mycobacterium abscessus ATCC 19977]
 gi|226736919|sp|B1MLZ3|RNPH_MYCA9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|169240542|emb|CAM61570.1| Probable ribonuclease PH [Mycobacterium abscessus]
          Length = 258

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 114/238 (47%), Positives = 158/238 (66%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ++++R +++TR  + +  GS L++FG T ++ TA+  E VP W + +  GW+TA
Sbjct: 4   REDGRQDDELRPVTITRGFTSHPAGSVLIEFGQTRVMCTASATEGVPRWRKGSGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R  RE+V GR GGR+QEI R+IGR+LR+ +DLSALG   I IDCDV+QA
Sbjct: 64  EYAMLPASTHTRSDRESVKGRVGGRTQEISRLIGRSLRACIDLSALGENTIAIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++     K    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVTYLA-AHGKLADDEPLSCAIAAVSVGVVDGRVRVDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VEVQG+ E ATF++     +L+ A      L  LQK+ ++
Sbjct: 183 DSRAEVDMNVVATDTGTLVEVQGTGEGATFARSTLDKLLDAAVGAADQLFVLQKEALA 240


>gi|115377533|ref|ZP_01464733.1| ribonuclease PH [Stigmatella aurantiaca DW4/3-1]
 gi|115365473|gb|EAU64508.1| ribonuclease PH [Stigmatella aurantiaca DW4/3-1]
          Length = 276

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 111/228 (48%), Positives = 148/228 (64%), Gaps = 2/228 (0%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R ++LT  VS++AEGS  V+FG T ++ T ++EE+VP  +     GW+TAEYGMLPRST
Sbjct: 50  LRPVTLTPGVSRHAEGSAQVEFGHTRVIVTCSVEERVPPHLMGKGTGWVTAEYGMLPRST 109

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
             R  REA  G+Q GR+ EIQR+IGR++R+ V+LS LG R + +DCDVIQADGGTRTA+I
Sbjct: 110 HTRSPREAAKGKQSGRTMEIQRLIGRSMRAAVNLSTLGPRTLTLDCDVIQADGGTRTASI 169

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
           TGA+VAL   L+ +       ++  +    +AA+S G++ G   VDLDY EDS  DVD N
Sbjct: 170 TGAYVALVMALRSLNSKGTLSRMPSLTP--LAAVSVGVVKGEVRVDLDYEEDSAADVDLN 227

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            V T  G IVEVQG+AE   F +    AML+     I  L   Q  V+
Sbjct: 228 LVATGDGRIVEVQGTAEHQLFDRKALDAMLDGGMAAIQQLTAAQAKVL 275


>gi|31792536|ref|NP_855029.1| ribonuclease PH [Mycobacterium bovis AF2122/97]
 gi|59798839|sp|Q7U076|RNPH_MYCBO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|31618125|emb|CAD94236.1| PROBABLE RIBONUCLEASE RPHA (RNase PH) (tRNA nucleotidyltransferase)
           [Mycobacterium bovis AF2122/97]
          Length = 259

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 109/238 (45%), Positives = 157/238 (65%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  ++   GS L++FG T +L TA++ E VP W + T  GW+TA
Sbjct: 4   REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R  RE+V GR  GR+QEI R+I R+LR+ +DL+ALG   I IDCDV+QA
Sbjct: 64  EYAMLPSATHSRSDRESVRGRLSGRTQEISRLISRSLRACIDLAALGENTIAIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVTYLS-AAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VE+QG+ E ATF++     +L++A      L   Q+D ++
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240


>gi|310820087|ref|YP_003952445.1| ribonuclease ph [Stigmatella aurantiaca DW4/3-1]
 gi|309393159|gb|ADO70618.1| Ribonuclease PH [Stigmatella aurantiaca DW4/3-1]
          Length = 237

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 111/228 (48%), Positives = 148/228 (64%), Gaps = 2/228 (0%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R ++LT  VS++AEGS  V+FG T ++ T ++EE+VP  +     GW+TAEYGMLPRST
Sbjct: 11  LRPVTLTPGVSRHAEGSAQVEFGHTRVIVTCSVEERVPPHLMGKGTGWVTAEYGMLPRST 70

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
             R  REA  G+Q GR+ EIQR+IGR++R+ V+LS LG R + +DCDVIQADGGTRTA+I
Sbjct: 71  HTRSPREAAKGKQSGRTMEIQRLIGRSMRAAVNLSTLGPRTLTLDCDVIQADGGTRTASI 130

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
           TGA+VAL   L+ +       ++  +    +AA+S G++ G   VDLDY EDS  DVD N
Sbjct: 131 TGAYVALVMALRSLNSKGTLSRMPSLTP--LAAVSVGVVKGEVRVDLDYEEDSAADVDLN 188

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            V T  G IVEVQG+AE   F +    AML+     I  L   Q  V+
Sbjct: 189 LVATGDGRIVEVQGTAEHQLFDRKALDAMLDGGMAAIQQLTAAQAKVL 236


>gi|300789523|ref|YP_003769814.1| ribonuclease PH [Amycolatopsis mediterranei U32]
 gi|299799037|gb|ADJ49412.1| ribonuclease PH [Amycolatopsis mediterranei U32]
          Length = 258

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 112/238 (47%), Positives = 160/238 (67%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++Q+R+I +TR   ++  GS L++FG+T +L  A++ E VP W   +  GW+TA
Sbjct: 3   RKDGRNDDQLRDIKITRGFQQWPAGSVLIEFGNTRVLCAASVTEGVPRWRAGSGLGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V GR GGR+ EI R+IGR+LR+ +DL+ALG   I+IDCDVIQA
Sbjct: 63  EYAMLPSATNTRGDRESVKGRIGGRTHEISRLIGRSLRACIDLAALGENTIVIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAA+TG +VAL D +  +   +N+    Q L   VAA+S G++ G   +DL Y E
Sbjct: 123 DGGTRTAAVTGGYVALADAITWLS-AANRLNDPQPLSSSVAAVSVGVVDGRVRLDLPYEE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G ++EVQG+ E ATF++     ML++A    A+L +LQ + ++
Sbjct: 182 DSRAEVDMNVVATDAGTLIEVQGTGEGATFARSTLDTMLDMALAGCAELTRLQNEALA 239


>gi|126652649|ref|ZP_01724810.1| ribonuclease PH [Bacillus sp. B14905]
 gi|126590498|gb|EAZ84616.1| ribonuclease PH [Bacillus sp. B14905]
          Length = 248

 Score =  212 bits (540), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 111/243 (45%), Positives = 156/243 (64%), Gaps = 7/243 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R + +      + EGS L++ G+T ++ TAT+E+KVP ++R    GWITA
Sbjct: 3   RFDGRMADELRPVKMVGEYLLHPEGSVLIQVGNTKVICTATIEDKVPGFLRGQGKGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQA
Sbjct: 63  EYSMLPRATAQRTPRESSRGKVNGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLD 178
           DGGTRTA+ITGA+VA+   +     E    KF ++  L    AA S G++     ++DL+
Sbjct: 123 DGGTRTASITGAFVAMTQAIAKFAEEKPFVKFPVTDFL----AATSVGIVEEQGAVLDLN 178

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y ED    VD N VMT +G  VE+QG+ E ATFS++    +L L +  I  L++LQK  +
Sbjct: 179 YVEDVAAAVDMNIVMTGAGRFVELQGTGEEATFSREELNDLLALGEKGIQQLVELQKTAL 238

Query: 239 SNE 241
           + +
Sbjct: 239 AEQ 241


>gi|229821215|ref|YP_002882741.1| ribonuclease PH [Beutenbergia cavernae DSM 12333]
 gi|229567128|gb|ACQ80979.1| ribonuclease PH [Beutenbergia cavernae DSM 12333]
          Length = 279

 Score =  212 bits (540), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 105/213 (49%), Positives = 144/213 (67%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  + +R I +TR     AEGS LV+FG+T +L  A+    VP W + +  GW+T
Sbjct: 14  VRADGRAPDDLRPIRITRGWLDAAEGSVLVEFGNTRVLCAASFTAGVPRWRKGSGEGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+V+D++ALG   I++DCDV+Q
Sbjct: 74  AEYAMLPRATNTRNDRESVRGRIGGRTHEISRLIGRSLRAVIDVAALGENTIVVDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D +    +     + + VL+  V+A+S G++ G P++DL Y 
Sbjct: 134 ADGGTRTAAITGAYVALADAVAWGLEHGEVRRGAHVLRDSVSAVSVGIVDGAPLLDLPYA 193

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
           ED   + D N V+T SG  VEVQG+AE A F +
Sbjct: 194 EDVRAETDMNVVVTGSGSFVEVQGTAEGAPFDR 226


>gi|311031422|ref|ZP_07709512.1| ribonuclease PH [Bacillus sp. m3-13]
          Length = 253

 Score =  212 bits (540), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 108/238 (45%), Positives = 159/238 (66%), Gaps = 3/238 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR++NQ+REI +      + EGS L+  G+T ++ +AT+E++VP ++R    GWITA
Sbjct: 3   RTDGREQNQLREIEIITDYITHPEGSVLISVGNTKVICSATIEDRVPPFMRGGGKGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALRSVV+L  +G + I IDCDVIQA
Sbjct: 63  EYSMLPRATEKRTMRESTKGKVTGRTMEIQRLIGRALRSVVELDKIGEKTIWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYG 180
           DGGTRTA+ITGA+VA+    Q + +      L   +   +AA S G++  G  ++DL+Y 
Sbjct: 123 DGGTRTASITGAFVAMVLAFQKLVEAKRIASLP--VTDFLAATSVGVMKDGQALLDLNYI 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDST  VD N +MT S  +VE+QG+ E +TF++     +L++A++ I  L+++QK  +
Sbjct: 181 EDSTAQVDMNVIMTGSLDLVELQGTGEESTFTRKQLNELLDMAEEGILHLVEVQKKAL 238


>gi|269216890|ref|ZP_06160744.1| tRNA nucleotidyltransferase [Slackia exigua ATCC 700122]
 gi|269129697|gb|EEZ60781.1| tRNA nucleotidyltransferase [Slackia exigua ATCC 700122]
          Length = 246

 Score =  212 bits (540), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 113/238 (47%), Positives = 160/238 (67%), Gaps = 5/238 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+  R +  MR+++L R V K A GSCLVKFGDTH+L +AT+E++V  W + +  GW+TA
Sbjct: 11  RVDNRLDRAMRDVTLERGVMKNASGSCLVKFGDTHVLVSATIEDRVAGWRKGSGLGWLTA 70

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR-QIIIDCDVIQ 120
           EY MLP +   R  RE   GR+ GRSQEI+R+IGR+LR+V D+  +G    + IDCDV+Q
Sbjct: 71  EYAMLPAAGTKRTPRE-TKGRK-GRSQEIERLIGRSLRNVCDMGRMGGEVTMTIDCDVLQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVA  D  + M   + + + +  L G VAA+S GM+ G  ++DLDY 
Sbjct: 129 ADGGTRTASITGAWVAAWDAFE-MWRMAGRCK-TNPLFGQVAAVSVGMVGGRLLLDLDYR 186

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  ++D N VM   G +VEVQG+ E+ +FS+     ML++A+  I  L++ Q+  +
Sbjct: 187 EDSQAEIDMNVVMNGKGELVEVQGTGEQVSFSRATLNEMLDMAQAGIDGLLEKQRAAV 244


>gi|226307366|ref|YP_002767326.1| ribonuclease PH [Rhodococcus erythropolis PR4]
 gi|229494008|ref|ZP_04387777.1| ribonuclease PH [Rhodococcus erythropolis SK121]
 gi|259494126|sp|C1A1V2|RNPH_RHOE4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226186483|dbj|BAH34587.1| ribonuclease PH [Rhodococcus erythropolis PR4]
 gi|229319077|gb|EEN84929.1| ribonuclease PH [Rhodococcus erythropolis SK121]
          Length = 261

 Score =  212 bits (540), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 104/239 (43%), Positives = 159/239 (66%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  + +  GS LV+FG+T ++ TA++EE VP W + +  GW+TA
Sbjct: 4   REDGRADDELRTVKITRGFTSHPAGSVLVEFGNTRVMCTASVEEGVPRWRKGSGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V G+ GGR+QEI R+IGR+LR+ +DL+A+G   I +DCDV+QA
Sbjct: 64  EYAMLPAATHTRSGRESVKGKVGGRTQEISRLIGRSLRACIDLAAIGENTIALDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAA+TGA+VAL D + ++   ++     Q +   +AA+S G++ G   +DL Y E
Sbjct: 124 DGGTRTAAVTGAYVALVDAVTYLR-AADLLSDPQPISCGIAAVSVGVVDGRVRLDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  +VD N V TD+G +VE+QG+ E ATF +     +L+ A      L ++Q+  ++ 
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFEIQRQALAE 241


>gi|315079375|gb|EFT51373.1| ribonuclease PH [Propionibacterium acnes HL053PA2]
          Length = 254

 Score =  212 bits (539), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 110/237 (46%), Positives = 155/237 (65%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ + R     AEGS LV FG T +L  A++ E VP W + +  GW+TA
Sbjct: 16  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+ GGR+ EI R++GR+LR+VVD  ALG   II+DCDV+QA
Sbjct: 76  EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +        +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALVDAVNWLR--GRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEE 193

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VM+ SG  VE+QG+AE   F+++    +L+LA    A L + Q + +
Sbjct: 194 DSRADTDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLASGGCATLKQAQSEAL 250


>gi|291299064|ref|YP_003510342.1| ribonuclease PH [Stackebrandtia nassauensis DSM 44728]
 gi|290568284|gb|ADD41249.1| ribonuclease PH [Stackebrandtia nassauensis DSM 44728]
          Length = 241

 Score =  212 bits (539), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 115/233 (49%), Positives = 152/233 (65%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R  + +R +   R  +K+ EGS LV+FGDT +L TA+++  VP W R +  GW+TA
Sbjct: 3   RPDNRAPDALRPVKFQRGWTKHPEGSVLVEFGDTRVLCTASVDTGVPRWRRGSGSGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  REAV G+ GGR+ EI R+IGRALRS +DL ALG   I IDCDV+QA
Sbjct: 63  EYSMLPRATNTRGDREAVKGKIGGRTHEISRLIGRALRSCLDLKALGENTITIDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITG++VAL D +  + D     +  ++L   VAA+S G++ G P++DL+Y E
Sbjct: 123 DGGTRTAAITGSYVALQDAVTWLTDKKMARKPDKILTRSVAAVSVGVVGGTPVLDLNYVE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           DS+ DVD N V T  G  VEVQG+ E A F +    A+L+LA     +L   Q
Sbjct: 183 DSSADVDMNVVCTGDGDFVEVQGTGEEAVFDRSTLDALLDLATKGCKELTGAQ 235


>gi|15827593|ref|NP_301856.1| ribonuclease PH [Mycobacterium leprae TN]
 gi|221230070|ref|YP_002503486.1| ribonuclease PH [Mycobacterium leprae Br4923]
 gi|585906|sp|P37939|RNPH_MYCLE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808596|sp|B8ZR59|RNPH_MYCLB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|466905|gb|AAA50880.1| rnpH [Mycobacterium leprae]
 gi|13093144|emb|CAC31555.1| ribonuclease PH [Mycobacterium leprae]
 gi|219933177|emb|CAR71269.1| ribonuclease PH [Mycobacterium leprae Br4923]
          Length = 259

 Score =  212 bits (539), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 104/238 (43%), Positives = 157/238 (65%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  +++  GS L++FG T ++ TA+  E VP W + +  GW+TA
Sbjct: 4   RADGRLDDELRAVVITRGFTEHPAGSVLIEFGHTKVMCTASPTEGVPRWRKGSGKGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE+V GR  GR+QEI R+IGR+LR+ +DL+ALG   I +DCDV+QA
Sbjct: 64  EYAMLPSATHTRSERESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAA+TGA+VAL D + ++   + +    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAVTGAYVALADAVTYLS-AAGRLLDPRPLSCAIAAVSVGVVDGRIRVDLSYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N + TD+G +VE+QG+ E ATF +     +L++A      L   Q+D ++
Sbjct: 183 DSRAEVDMNVIATDTGTLVEIQGTGEGATFPRSTLDKLLDMALGACDKLFVAQRDALA 240


>gi|315079990|gb|EFT51966.1| ribonuclease PH [Propionibacterium acnes HL078PA1]
          Length = 254

 Score =  212 bits (539), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 110/237 (46%), Positives = 155/237 (65%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ + R     AEGS LV FG T +L  A++ E VP W + +  GW+TA
Sbjct: 16  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+ GGR+ EI R++GR+LR+VVD  ALG   II+DCDV+QA
Sbjct: 76  EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +        +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALVDAVNWLR--GRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEE 193

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VM+ SG  VE+QG+AE   F+++    +L+LA    A L + Q + +
Sbjct: 194 DSRADTDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEAL 250


>gi|289427808|ref|ZP_06429517.1| tRNA nucleotidyltransferase [Propionibacterium acnes J165]
 gi|295131196|ref|YP_003581859.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK137]
 gi|289158990|gb|EFD07185.1| tRNA nucleotidyltransferase [Propionibacterium acnes J165]
 gi|291375935|gb|ADD99789.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK137]
 gi|313773261|gb|EFS39227.1| ribonuclease PH [Propionibacterium acnes HL074PA1]
 gi|313793456|gb|EFS41507.1| ribonuclease PH [Propionibacterium acnes HL110PA1]
 gi|313801145|gb|EFS42408.1| ribonuclease PH [Propionibacterium acnes HL110PA2]
 gi|313808494|gb|EFS46959.1| ribonuclease PH [Propionibacterium acnes HL087PA2]
 gi|313812067|gb|EFS49781.1| ribonuclease PH [Propionibacterium acnes HL083PA1]
 gi|313812337|gb|EFS50051.1| ribonuclease PH [Propionibacterium acnes HL025PA1]
 gi|313819229|gb|EFS56943.1| ribonuclease PH [Propionibacterium acnes HL046PA2]
 gi|313821099|gb|EFS58813.1| ribonuclease PH [Propionibacterium acnes HL036PA1]
 gi|313823475|gb|EFS61189.1| ribonuclease PH [Propionibacterium acnes HL036PA2]
 gi|313827022|gb|EFS64736.1| ribonuclease PH [Propionibacterium acnes HL063PA1]
 gi|313829864|gb|EFS67578.1| ribonuclease PH [Propionibacterium acnes HL007PA1]
 gi|313834706|gb|EFS72420.1| ribonuclease PH [Propionibacterium acnes HL056PA1]
 gi|313837925|gb|EFS75639.1| ribonuclease PH [Propionibacterium acnes HL086PA1]
 gi|314925916|gb|EFS89747.1| ribonuclease PH [Propionibacterium acnes HL036PA3]
 gi|314960891|gb|EFT04992.1| ribonuclease PH [Propionibacterium acnes HL002PA2]
 gi|314963345|gb|EFT07445.1| ribonuclease PH [Propionibacterium acnes HL082PA1]
 gi|314974022|gb|EFT18118.1| ribonuclease PH [Propionibacterium acnes HL053PA1]
 gi|314975448|gb|EFT19543.1| ribonuclease PH [Propionibacterium acnes HL045PA1]
 gi|314979453|gb|EFT23547.1| ribonuclease PH [Propionibacterium acnes HL072PA2]
 gi|314984208|gb|EFT28300.1| ribonuclease PH [Propionibacterium acnes HL005PA1]
 gi|314988437|gb|EFT32528.1| ribonuclease PH [Propionibacterium acnes HL005PA2]
 gi|314988644|gb|EFT32735.1| ribonuclease PH [Propionibacterium acnes HL005PA3]
 gi|315083401|gb|EFT55377.1| ribonuclease PH [Propionibacterium acnes HL027PA2]
 gi|315086804|gb|EFT58780.1| ribonuclease PH [Propionibacterium acnes HL002PA3]
 gi|315089451|gb|EFT61427.1| ribonuclease PH [Propionibacterium acnes HL072PA1]
 gi|315097778|gb|EFT69754.1| ribonuclease PH [Propionibacterium acnes HL038PA1]
 gi|327325397|gb|EGE67202.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL096PA2]
 gi|327328264|gb|EGE70028.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL096PA3]
 gi|327443690|gb|EGE90344.1| ribonuclease PH [Propionibacterium acnes HL043PA1]
 gi|327449227|gb|EGE95881.1| ribonuclease PH [Propionibacterium acnes HL043PA2]
 gi|327450179|gb|EGE96833.1| ribonuclease PH [Propionibacterium acnes HL013PA2]
 gi|327451243|gb|EGE97897.1| ribonuclease PH [Propionibacterium acnes HL092PA1]
 gi|328756765|gb|EGF70381.1| ribonuclease PH [Propionibacterium acnes HL020PA1]
 gi|328761039|gb|EGF74591.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL099PA1]
 gi|332676073|gb|AEE72889.1| ribonuclease PH [Propionibacterium acnes 266]
          Length = 254

 Score =  212 bits (539), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 110/237 (46%), Positives = 155/237 (65%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ + R     AEGS LV FG T +L  A++ E VP W + +  GW+TA
Sbjct: 16  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+ GGR+ EI R++GR+LR+VVD  ALG   II+DCDV+QA
Sbjct: 76  EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +        +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALVDAVNWLR--GRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEE 193

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VM+ SG  VE+QG+AE   F+++    +L+LA    A L + Q + +
Sbjct: 194 DSRADTDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEAL 250


>gi|299535538|ref|ZP_07048859.1| ribonuclease PH [Lysinibacillus fusiformis ZC1]
 gi|298728738|gb|EFI69292.1| ribonuclease PH [Lysinibacillus fusiformis ZC1]
          Length = 249

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 112/237 (47%), Positives = 152/237 (64%), Gaps = 7/237 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  + +R + +      + EGS L++ G+T ++ TAT+E+KVP ++R    GWITA
Sbjct: 3   RFDGRNADGLRPVKIDSEYLLHPEGSVLIQVGNTKVICTATIEDKVPGFLRGQGKGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQA
Sbjct: 63  EYSMLPRATAQRTPRESSRGKVNGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLD 178
           DGGTRTA+ITGA+VA+   +     E    KF ++  L    AA S G++     I+DL+
Sbjct: 123 DGGTRTASITGAFVAMTQAIAKFAEEKPFEKFPVTDFL----AATSVGIVEEQGAILDLN 178

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           Y ED    VD N VMT +G  VE+QG+ E ATFS++    +L L +  I  L++LQK
Sbjct: 179 YVEDVAAAVDMNIVMTGAGRFVELQGTGEEATFSREELNELLALGEKGIQQLVELQK 235


>gi|308174534|ref|YP_003921239.1| ribonuclease PH [Bacillus amyloliquefaciens DSM 7]
 gi|307607398|emb|CBI43769.1| ribonuclease PH [Bacillus amyloliquefaciens DSM 7]
 gi|328554456|gb|AEB24948.1| ribonuclease PH [Bacillus amyloliquefaciens TA208]
 gi|328912859|gb|AEB64455.1| ribonuclease PH [Bacillus amyloliquefaciens LL3]
          Length = 245

 Score =  211 bits (538), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 116/246 (47%), Positives = 160/246 (65%), Gaps = 13/246 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GRQ +++R I+       + EGS L+  G+T ++  A++E++VP ++R    GWIT
Sbjct: 1   MRHDGRQHDELRPITFDLDFITHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL  LG R I IDCDVIQ
Sbjct: 61  AEYSMLPRATNQRTIRESSKGKVSGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK-----GHVAAISCGMLCGYP-I 174
           ADGGTRTA+ITGA++A       M   + K   S V+K      ++AAIS GM      +
Sbjct: 121 ADGGTRTASITGAFLA-------MAIAAGKLVKSGVIKTSPVTDYLAAISVGMDKEEGLL 173

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           +DL+Y EDS  +VD N +MT SG  VE+QG+ E ATFS++    +L+LA+  I  LI+ Q
Sbjct: 174 LDLNYEEDSAAEVDMNIIMTGSGRFVELQGTGEEATFSREDLNGLLSLAEKGIQTLIQKQ 233

Query: 235 KDVISN 240
           K+V+ +
Sbjct: 234 KEVLGD 239


>gi|225021578|ref|ZP_03710770.1| hypothetical protein CORMATOL_01599 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945569|gb|EEG26778.1| hypothetical protein CORMATOL_01599 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 242

 Score =  211 bits (538), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 103/233 (44%), Positives = 154/233 (66%), Gaps = 2/233 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R I +TR  +    GS L+++G+T ++ TA+ E+ VP + +++  GW+TA
Sbjct: 6   RADGRAPDQLRPIRITRGFTTNPAGSVLIEYGNTRVMCTASAEQGVPRFKKDSGEGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R+ RE++ G+  GR+ EI R++GR+LR+ +DL+ LG   I IDCDV+QA
Sbjct: 66  EYAMLPAATHERMPRESMRGKVKGRTHEISRLVGRSLRAAIDLTLLGENTINIDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA++AL D + H+   +        L   +AA+S G++ G+  +DL Y E
Sbjct: 126 DGGTRTASITGAYIALADAIAHL--TAQGVVPGNPLLPPIAAVSVGIIDGHVCLDLPYEE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           DS  DVD N +MT  G  VE+QG+AE  TFS++   AML+ A+    +LI+ Q
Sbjct: 184 DSRADVDLNVIMTQEGKFVEIQGTAEHNTFSREELNAMLDYAEKGCKELIEAQ 236


>gi|269218709|ref|ZP_06162563.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269211820|gb|EEZ78160.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 245

 Score =  211 bits (538), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 109/231 (47%), Positives = 147/231 (63%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           MR +S++R      EGS LV FG T +L  A+  E VP W ++T  GW+TAEY MLPR+T
Sbjct: 1   MRPVSISRGWLDAGEGSVLVSFGKTTVLCVASFTEGVPRWRKDTGLGWVTAEYSMLPRAT 60

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
             R  RE+V G+ GGR+ EI R+IGRALR+ VD+ ALG   I +DCDV++ADGGTRTA+I
Sbjct: 61  DERSARESVKGKIGGRTHEISRLIGRALRACVDMRALGENTIQLDCDVLRADGGTRTASI 120

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
           TGA+ AL D +              VL   V+A+S G++ G P++DL Y EDS  D D N
Sbjct: 121 TGAFAALADAVDWAVGEGIVKPRRPVLSDTVSAVSVGVVDGRPVLDLPYEEDSRADTDMN 180

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
            V T +G  +E+QG+AERA FS+     +L+LA    A L  +QK+ ++ E
Sbjct: 181 VVATGAGQFIEIQGTAERAPFSRGELGELLDLAAIGTAHLAAVQKEALTGE 231


>gi|320096011|ref|ZP_08027624.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319977082|gb|EFW08812.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 255

 Score =  211 bits (537), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 103/212 (48%), Positives = 139/212 (65%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R +S+TR  S   EGS L++FG T +L  A+    VP W R++  GW+TA
Sbjct: 7   RADGRAPDQLRPVSITRGWSGTGEGSVLIEFGATRVLCVASFTTGVPRWKRDSGEGWVTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+QEI R+IGR+LR VVD  ALG   + +DCDV++A
Sbjct: 67  EYAMLPRATDQRSPRESVKGRVGGRTQEISRLIGRSLRGVVDTRALGENTVTLDCDVLRA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA++TGA++AL D +   +        ++VL   V+AIS G++ G P++DL Y E
Sbjct: 127 DGGTRTASVTGAYIALADAVAWAKRNGAVSPGAKVLTDSVSAISVGIVDGAPVLDLPYAE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
           D     D N V T  G  +EVQG+AE A FS+
Sbjct: 187 DVRAHTDMNVVQTGDGRFIEVQGTAEHAPFSR 218


>gi|300780583|ref|ZP_07090438.1| tRNA nucleotidyltransferase [Corynebacterium genitalium ATCC 33030]
 gi|300533569|gb|EFK54629.1| tRNA nucleotidyltransferase [Corynebacterium genitalium ATCC 33030]
          Length = 245

 Score =  211 bits (537), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 107/235 (45%), Positives = 156/235 (66%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  ++MR + +TR  +    GS LV+FG+T ++ TA+ EE VP + +++  GW+T
Sbjct: 8   LRADGRALDEMRPVRITRGFTSNPAGSVLVEFGNTRVMCTASAEEGVPRFKKDSGEGWLT 67

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP +T +R+ RE++ G+  GR+ EI R++GR+LR+ VDL+ALG   I +DCDV+Q
Sbjct: 68  AEYAMLPAATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLTALGENTIQLDCDVLQ 127

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D + ++++        + L   VAA+S G++ G   +DL Y 
Sbjct: 128 ADGGTRTASITGAYVALADAIGYLKE--QGVVPGEPLLAPVAAVSVGIVDGRVCLDLPYE 185

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  +VD N VMTDSG  VEVQG+ E   F ++    ML+ A+    +LI  QK
Sbjct: 186 EDSRAEVDLNVVMTDSGDFVEVQGTGEHGLFGREQLGLMLDAAEKGCRELIDAQK 240


>gi|229062175|ref|ZP_04199499.1| Ribonuclease PH [Bacillus cereus AH603]
 gi|228717158|gb|EEL68834.1| Ribonuclease PH [Bacillus cereus AH603]
          Length = 259

 Score =  211 bits (537), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 109/241 (45%), Positives = 158/241 (65%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR + ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 15  MRVDGRGKAELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 74

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 75  AEYSMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 134

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS-CGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S   +     ++DL+Y
Sbjct: 135 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGVVEEQGVVLDLNY 192

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  L++ QK+ + 
Sbjct: 193 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAELNELLDAAEQGIFQLVEKQKEALG 252

Query: 240 N 240
           +
Sbjct: 253 D 253


>gi|305681138|ref|ZP_07403945.1| tRNA nucleotidyltransferase [Corynebacterium matruchotii ATCC
           14266]
 gi|305659343|gb|EFM48843.1| tRNA nucleotidyltransferase [Corynebacterium matruchotii ATCC
           14266]
          Length = 242

 Score =  211 bits (537), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 103/233 (44%), Positives = 154/233 (66%), Gaps = 2/233 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R I +TR  +    GS L+++G+T ++ TA+ E+ VP + +++  GW+TA
Sbjct: 6   RADGRAPDQLRPIRITRGFTTNPAGSVLIEYGNTRVMCTASAEQGVPRFKKDSGEGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R+ RE++ G+  GR+ EI R++GR+LR+ +DL+ LG   I IDCDV+QA
Sbjct: 66  EYAMLPAATHERMPRESMRGKVKGRTHEISRLVGRSLRAAIDLTLLGENTINIDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA++AL D + ++   +        L   +AA+S G++ G+  +DL Y E
Sbjct: 126 DGGTRTASITGAYIALADAIAYL--TAQGVVPGNPLLPPIAAVSVGIIDGHVCLDLPYEE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           DS  DVD N +MT  G  VE+QG+AE  TFS+D   AML+ A+    +LI+ Q
Sbjct: 184 DSRADVDLNVIMTQEGKFVEIQGTAEHNTFSRDELNAMLDYAEKGCKELIEAQ 236


>gi|117928891|ref|YP_873442.1| ribonuclease PH [Acidothermus cellulolyticus 11B]
 gi|117649354|gb|ABK53456.1| RNAse PH [Acidothermus cellulolyticus 11B]
          Length = 240

 Score =  211 bits (537), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 110/240 (45%), Positives = 153/240 (63%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR  +++R +  TR    +AEGS LV+FG T +L  A++ E VP W + T  GW+T
Sbjct: 2   LRVDGRAADELRPVRFTRGWLLHAEGSVLVEFGRTRVLCAASVLEGVPKWRKGTGLGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            EY MLPR+T  R  RE+V GR GGR+QEI R++GR+LR+ V+ + LG   + +DCDV+Q
Sbjct: 62  GEYAMLPRATTTRTDRESVRGRLGGRTQEISRLVGRSLRACVEPARLGENTVHLDCDVLQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA++AL D  + M D  + +  S  L   VAA+S G++ G P++DL Y 
Sbjct: 122 ADGGTRTAAITGAYLALADACRWMRD--HGWVTSDPLVRSVAAVSVGIVDGVPVLDLCYD 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED     D N VMT  G  VE+QG+AE     +D   A+L LA    A L +LQ+  ++ 
Sbjct: 180 EDVRAGTDMNVVMTGDGDFVEIQGTAEGTPLRRDEVDALLELATRGCARLTELQRTALAE 239


>gi|229019707|ref|ZP_04176514.1| Ribonuclease PH [Bacillus cereus AH1273]
 gi|229027352|ref|ZP_04183607.1| Ribonuclease PH [Bacillus cereus AH1272]
 gi|228733960|gb|EEL84699.1| Ribonuclease PH [Bacillus cereus AH1272]
 gi|228741614|gb|EEL91807.1| Ribonuclease PH [Bacillus cereus AH1273]
          Length = 245

 Score =  211 bits (537), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 109/241 (45%), Positives = 158/241 (65%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR + ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGRGQAELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYSMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS-CGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S   +     ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQADKVSKIP--VKDYLAATSVGVVEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  L++ QK+ + 
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAELNELLDAAEQGIFQLVEKQKEALG 238

Query: 240 N 240
           +
Sbjct: 239 D 239


>gi|154686972|ref|YP_001422133.1| ribonuclease PH [Bacillus amyloliquefaciens FZB42]
 gi|166228265|sp|A7Z7C6|RNPH_BACA2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|154352823|gb|ABS74902.1| Rph [Bacillus amyloliquefaciens FZB42]
          Length = 245

 Score =  211 bits (536), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 114/239 (47%), Positives = 159/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GRQ +++R I+       + EGS L+  G+T ++  A++E++VP ++R    GWIT
Sbjct: 1   MRHDGRQHDELRPITFDLDFITHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL  LG R I IDCDVIQ
Sbjct: 61  AEYSMLPRATNQRTIRESSKGKVSGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDY 179
           ADGGTRTA+ITGA++A+   +  +   S   + S V   ++AAIS GM      ++DL+Y
Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLVK-SGVIKTSPVTD-YLAAISVGMDKEEGLLLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS  +VD N +MT SG  VE+QG+ E ATFS++    +L+LA+  I  LI+ QK+V+
Sbjct: 179 EEDSAAEVDMNIIMTGSGRFVELQGTGEEATFSREDLNGLLSLAEKGIQTLIQKQKEVL 237


>gi|312968015|ref|ZP_07782226.1| ribonuclease PH [Escherichia coli 2362-75]
 gi|312287274|gb|EFR15183.1| ribonuclease PH [Escherichia coli 2362-75]
          Length = 211

 Score =  211 bits (536), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 110/212 (51%), Positives = 144/212 (67%), Gaps = 2/212 (0%)

Query: 29  LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
           LV+FGDT +L TA++EE VP +++    GWITAEYGMLPRST  R  REA  G+QGGR+ 
Sbjct: 2   LVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTM 61

Query: 89  EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
           EIQR+I RALR+ VDL ALG   I +DCDV+QADGGTRTA+ITGA VAL D L  +    
Sbjct: 62  EIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACVALADALNKL--VE 119

Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
           N    +  +KG VAA+S G++ G  + DL+Y EDS  + D N VMT+ G I+EVQG+AE 
Sbjct: 120 NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEG 179

Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 180 EPFTHEELLTLLALARGGIESIVATQKAALAN 211


>gi|163942228|ref|YP_001647112.1| ribonuclease PH [Bacillus weihenstephanensis KBAB4]
 gi|229013696|ref|ZP_04170825.1| Ribonuclease PH [Bacillus mycoides DSM 2048]
 gi|229135326|ref|ZP_04264120.1| Ribonuclease PH [Bacillus cereus BDRD-ST196]
 gi|229169222|ref|ZP_04296936.1| Ribonuclease PH [Bacillus cereus AH621]
 gi|226736888|sp|A9VIV4|RNPH_BACWK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|163864425|gb|ABY45484.1| ribonuclease PH [Bacillus weihenstephanensis KBAB4]
 gi|228614288|gb|EEK71399.1| Ribonuclease PH [Bacillus cereus AH621]
 gi|228648149|gb|EEL04190.1| Ribonuclease PH [Bacillus cereus BDRD-ST196]
 gi|228747618|gb|EEL97492.1| Ribonuclease PH [Bacillus mycoides DSM 2048]
          Length = 245

 Score =  211 bits (536), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 109/241 (45%), Positives = 158/241 (65%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR + ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGRGKAELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYSMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS-CGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S   +     ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP--VKDYLAATSVGVVEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  L++ QK+ + 
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAELNELLDAAEQGIFQLVEKQKEALG 238

Query: 240 N 240
           +
Sbjct: 239 D 239


>gi|239827937|ref|YP_002950561.1| ribonuclease PH [Geobacillus sp. WCH70]
 gi|259494121|sp|C5D5M7|RNPH_GEOSW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|239808230|gb|ACS25295.1| ribonuclease PH [Geobacillus sp. WCH70]
          Length = 255

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 108/239 (45%), Positives = 157/239 (65%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+  Q+R + + +   K+AEGS  +  GDT ++ TA++++KVP ++R    GWIT
Sbjct: 1   MRIDGRENKQLRPVHMEKHFIKHAEGSVFITVGDTKVICTASIDDKVPPFMRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALRSVV+L  LG + + IDCDVIQ
Sbjct: 61  AEYAMLPRATEQRNVRESSKGKLSGRTMEIQRLIGRALRSVVNLDKLGEKTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VA+      + +     +L   +   +AA S G+   + I+ DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFAKLMEEKKLDELP--VNDFLAATSVGIDPEHGIILDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED+  +VD N VMT +G  VE+QG+ E ATFS++    +L+ A+  I  LI +Q+  +
Sbjct: 179 AEDARAEVDMNIVMTGAGRFVEIQGTGEEATFSREQLNELLDTAEVGIRQLIDIQRKTL 237


>gi|327332417|gb|EGE74153.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL097PA1]
          Length = 280

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 109/237 (45%), Positives = 155/237 (65%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ + R     AEGS LV FG T +L  A++ E VP W + +  GW+TA
Sbjct: 42  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 101

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+ GGR+ EI R++GR+LR+VVD  ALG   II+DCDV+QA
Sbjct: 102 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 161

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +        +S+ + G V AIS G++ G P++DL Y E
Sbjct: 162 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEE 219

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VM+ +G  VE+QG+AE   F+++    +L+LA    A L + Q + +
Sbjct: 220 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEAL 276


>gi|194017374|ref|ZP_03055986.1| ribonuclease PH [Bacillus pumilus ATCC 7061]
 gi|194011242|gb|EDW20812.1| ribonuclease PH [Bacillus pumilus ATCC 7061]
          Length = 242

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/238 (46%), Positives = 158/238 (66%), Gaps = 3/238 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MRL  R  +++R+I +      + EGS L+  G+T ++  A++E++VP ++R    GWIT
Sbjct: 1   MRLDERHYDELRKIEIEAGYITHPEGSVLISAGNTKVICNASIEDRVPPFLRGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL  LG R I IDCDVIQ
Sbjct: 61  AEYSMLPRATAQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDY 179
           ADGGTRTA+ITGA+VA+   +Q +   +        +  ++AAIS G+      ++DL+Y
Sbjct: 121 ADGGTRTASITGAFVAMTLAIQKLR--AEGVIKQNPITDYLAAISVGIDSQQGLLLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            EDS+ +VD N +MT +G  VE+QG+ E ATFS++    +L+LA+  I +LI+ QK V
Sbjct: 179 EEDSSAEVDMNVIMTGAGRFVELQGTGEEATFSREQLNGLLDLAEKGIKELIEKQKAV 236


>gi|183601855|ref|ZP_02963224.1| probable ribonuclease PH [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219682769|ref|YP_002469152.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis AD011]
 gi|183218740|gb|EDT89382.1| probable ribonuclease PH [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219620419|gb|ACL28576.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis AD011]
 gi|289178068|gb|ADC85314.1| Ribonuclease PH [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 246

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 104/222 (46%), Positives = 144/222 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R + +TR  +   EGS L++ G+T ++ TAT  + VP W +++  GW+TA
Sbjct: 5   RADGRAYDELRPVRITRAFTDVPEGSVLIECGNTRVMCTATFTDTVPRWRKDSGLGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR V+D+ ALG   I +DCDV+QA
Sbjct: 65  EYSMLPRATAQRTDRESVRGKVGGRTHEISRLIGRCLRGVIDMKALGENTIQMDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L   +       +  VL   V+A+S G++ G P++DL Y E
Sbjct: 125 DGGTRTASITGAHVALVDALNWAKQNGKIKSVKNVLLDSVSAVSVGVIDGEPMLDLPYVE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           DS    D N  MT SG  VE+QG+AE   FS++    +L+LA
Sbjct: 185 DSRAMTDMNVAMTGSGKFVEIQGTAEHRPFSRNELGVLLDLA 226


>gi|157693251|ref|YP_001487713.1| ribonuclease PH [Bacillus pumilus SAFR-032]
 gi|166991082|sp|A8FFY6|RNPH_BACP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157682009|gb|ABV63153.1| tRNA nucleotidyltransferase [Bacillus pumilus SAFR-032]
          Length = 242

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/238 (46%), Positives = 158/238 (66%), Gaps = 3/238 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MRL  R  +++R+I +      + EGS L+  G+T ++  A++E++VP ++R    GWIT
Sbjct: 1   MRLDERHYDELRKIEIEAGYITHPEGSVLISAGNTKVICNASIEDRVPPFLRGEGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL  LG R I IDCDVIQ
Sbjct: 61  AEYSMLPRATAQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDY 179
           ADGGTRTA+ITGA+VA+   +Q +       Q    +  ++AAIS G+      ++DL+Y
Sbjct: 121 ADGGTRTASITGAFVAMTLAIQKLRAEGAIKQ--NPITDYLAAISVGIDSQQGLLLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            EDS+ +VD N +MT +G  VE+QG+ E ATFS++    +L+LA+  I +LI+ QK V
Sbjct: 179 EEDSSAEVDMNVIMTGAGRFVELQGTGEEATFSREQLNGLLDLAEKGIKELIEKQKAV 236


>gi|87308273|ref|ZP_01090414.1| ribonuclease PH [Blastopirellula marina DSM 3645]
 gi|87288830|gb|EAQ80723.1| ribonuclease PH [Blastopirellula marina DSM 3645]
          Length = 237

 Score =  210 bits (534), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 113/242 (46%), Positives = 152/242 (62%), Gaps = 12/242 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ NQ+RE+ + RR +K A GS L++ G T +L TA++E  VP W++ +  GWITA
Sbjct: 3   RHDGRKANQLRELKIKRRFTKNAAGSVLIQTGATTVLCTASVESSVPPWLKGSGKGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R  R+       GR+ EIQR+IGR+LR+V DL ALG + I +DCDV+ A
Sbjct: 63  EYNMLPGSTPTRKSRKV-----DGRTTEIQRLIGRSLRAVADLEALGEQMITVDCDVLDA 117

Query: 122 DGGTRTAAITGAWVALHDCLQH--MEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           DGGTRTA+ITGA++AL D LQ   + D   KF L       VAA+S G++ G   +DLDY
Sbjct: 118 DGGTRTASITGAFIALVDALQTIVLPD-PKKFPLVD----SVAAVSVGLVNGAGALDLDY 172

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED    VD N VMT SG  VEVQG+ E ATF+++    ++ L K  +  L + Q   + 
Sbjct: 173 IEDVDAAVDMNVVMTGSGKFVEVQGAGEEATFTEEELMKLIQLGKHGVKVLTEAQAKALG 232

Query: 240 NE 241
            +
Sbjct: 233 KK 234


>gi|238927868|ref|ZP_04659628.1| ribonuclease PH [Selenomonas flueggei ATCC 43531]
 gi|238884288|gb|EEQ47926.1| ribonuclease PH [Selenomonas flueggei ATCC 43531]
          Length = 248

 Score =  210 bits (534), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 114/241 (47%), Positives = 158/241 (65%), Gaps = 13/241 (5%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R+ +Q+R + + R   +YA+GS L++ G T ++  AT+EE+VP +++ T  GW+TAEY M
Sbjct: 7   RRADQLRPVRIERGYQRYADGSALIETGHTRVVCAATVEERVPFFLKGTGTGWVTAEYSM 66

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP +   R  REAV G Q GR+QEIQR+IGRALR+VVD  ALG R I IDCDV+QADGGT
Sbjct: 67  LPGAGAERTAREAVRGHQSGRTQEIQRLIGRALRAVVDTKALGERTIHIDCDVLQADGGT 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVL--KGHVAAISCGMLC-GYPIVDLDYGED 182
           RTA++TGA+VAL      +E C++ +    +   + +VAA+S G+     P++DL Y ED
Sbjct: 127 RTASVTGAFVAL------VEACASFYAKRGIFPVRDYVAAVSVGINAENEPLLDLCYEED 180

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK----DVI 238
           S   VD N VMT +G  VEVQG+ E   F++    A+L+L +  I  LI  QK    DV+
Sbjct: 181 SAAMVDMNIVMTGAGAFVEVQGTGEGRAFARKELNALLDLGEQGIRTLIDQQKVALGDVL 240

Query: 239 S 239
           S
Sbjct: 241 S 241


>gi|82523716|emb|CAI78497.1| hypothetical protein [uncultured beta proteobacterium]
          Length = 243

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 116/235 (49%), Positives = 159/235 (67%), Gaps = 4/235 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  + +R +S TR  +K+AEGS LV  GDT +L TA++ +K+P   + +  GW+TA
Sbjct: 6   RPSGRAPDALRTLSFTRGFTKHAEGSVLVSMGDTRVLCTASVLDKIPPHKKGSGEGWVTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR+VVDL  LG R + IDCDV+QA
Sbjct: 66  EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVVDLKKLGERTLHIDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTR A+I GA+VA+ D +  +     + +L++  L   +AA+S G+  G+P++DLDY 
Sbjct: 126 DGGTRCASICGAYVAVADAVAGL---LREGKLAETPLNDSIAAVSVGVYEGHPVLDLDYI 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           ED   D D N VMT SG IVE+QG+AE   FS+    A+++LA   I  +   Q+
Sbjct: 183 EDFECDTDMNVVMTGSGGIVEIQGTAEGVPFSRATLDALVDLAAAGIVQISTAQQ 237


>gi|51245125|ref|YP_065009.1| ribonuclease PH [Desulfotalea psychrophila LSv54]
 gi|61215901|sp|Q6ANS2|RNPH_DESPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|50876162|emb|CAG36002.1| probable ribonuclease PH [Desulfotalea psychrophila LSv54]
          Length = 236

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/236 (46%), Positives = 155/236 (65%), Gaps = 4/236 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R    +R IS+ R V  +A+ S L++ G+TH++   ++EE VP ++R +  GWIT
Sbjct: 3   MRQNNRTAESLRPISIERGVQLHADASVLIRMGNTHVICGVSVEESVPPFMRGSGKGWIT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP +T +R +RE  +GR G R+ EIQR+IGR+LR +VDL  +G R + +DCDV+ 
Sbjct: 63  AEYGMLPCATDSRYRRE-TNGRSG-RTMEIQRLIGRSLRMMVDLETIGERTLRVDCDVLN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG  +AL D    +       ++ +++   V AIS GM  G  ++DLDY 
Sbjct: 121 ADGGTRTASITGGALALRDAFTKLHTTGLLEKMPEIMP--VVAISVGMKDGQALLDLDYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           EDS+ D DANFVM   G  +EVQ +AE   FS D F AM +LA+   A+L++L +D
Sbjct: 179 EDSSADADANFVMAGDGRWIEVQSTAEGRPFSHDQFLAMADLAQKGSAELLQLWRD 234


>gi|118462847|ref|YP_880792.1| ribonuclease PH [Mycobacterium avium 104]
 gi|166228290|sp|A0QD04|RNPH_MYCA1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|118164134|gb|ABK65031.1| ribonuclease PH [Mycobacterium avium 104]
          Length = 259

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/237 (44%), Positives = 155/237 (65%), Gaps = 1/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  +++  GS L++FG T ++ TA++ E VP W + +  GW+TA
Sbjct: 4   REDGRLDDELRPLVITRGFTEHPAGSVLIEFGHTKVMCTASVTEGVPRWRKGSGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V GR  GR+QEI R+IGR+LR+ +DL+ALG   I +DCDV+QA
Sbjct: 64  EYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAFVALADAVTYLS-AAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D+  +VD N V TD+G +VEVQG+ E ATF +     +L+ A      L   Q++ +
Sbjct: 183 DARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDAALAACDKLFAAQREAL 239


>gi|41408520|ref|NP_961356.1| ribonuclease PH [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|254774377|ref|ZP_05215893.1| ribonuclease PH [Mycobacterium avium subsp. avium ATCC 25291]
 gi|61215988|sp|Q73X87|RNPH_MYCPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|41396876|gb|AAS04739.1| RphA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 259

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/237 (44%), Positives = 155/237 (65%), Gaps = 1/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  +++  GS L++FG T ++ TA++ E VP W + +  GW+TA
Sbjct: 4   REDGRLDDELRPLVITRGFTEHPAGSVLIEFGHTKVMCTASVTEGVPRWRKGSGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V GR  GR+QEI R+IGR+LR+ +DL+ALG   I +DCDV+QA
Sbjct: 64  EYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAFVALADAVTYLS-AAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D+  +VD N V TD+G +VEVQG+ E ATF +     +L+ A      L   Q++ +
Sbjct: 183 DARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDAALAACDKLFAAQREAL 239


>gi|314956852|gb|EFT01006.1| ribonuclease PH [Propionibacterium acnes HL027PA1]
          Length = 254

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/237 (45%), Positives = 155/237 (65%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ + R     AEGS LV FG T +L  A++ E VP W + +  GW+TA
Sbjct: 16  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+ GGR+ EI R++GR+LR+VVD  ALG   II+DCDV+QA
Sbjct: 76  EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +        +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 193

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VM+ +G  VE+QG+AE   F+++    +L+LA    A L + Q + +
Sbjct: 194 DSRADTDVNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEAL 250


>gi|50843137|ref|YP_056364.1| ribonuclease PH [Propionibacterium acnes KPA171202]
 gi|50840739|gb|AAT83406.1| probable ribonuclease PH [Propionibacterium acnes KPA171202]
          Length = 254

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/237 (45%), Positives = 155/237 (65%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ + R     AEGS LV FG T +L  A++ E VP W + +  GW+TA
Sbjct: 16  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+ GGR+ EI R++GR+LR+VVD  ALG   II+DCDV+QA
Sbjct: 76  EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +        +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYKE 193

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VM+ +G  VE+QG+AE   F+++    +L+LA    A L + Q + +
Sbjct: 194 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEAL 250


>gi|61215895|sp|Q6A759|RNPH_PROAC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
          Length = 244

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/237 (45%), Positives = 155/237 (65%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ + R     AEGS LV FG T +L  A++ E VP W + +  GW+TA
Sbjct: 6   RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+ GGR+ EI R++GR+LR+VVD  ALG   II+DCDV+QA
Sbjct: 66  EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +        +S+ + G V AIS G++ G P++DL Y E
Sbjct: 126 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYKE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VM+ +G  VE+QG+AE   F+++    +L+LA    A L + Q + +
Sbjct: 184 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEAL 240


>gi|300867701|ref|ZP_07112346.1| ribonuclease PH [Oscillatoria sp. PCC 6506]
 gi|300334284|emb|CBN57518.1| ribonuclease PH [Oscillatoria sp. PCC 6506]
          Length = 243

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/237 (44%), Positives = 158/237 (66%), Gaps = 4/237 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ NQ+R IS  R  +K+A GS L + GDT +L T +++  VP +++ T  GW+TA
Sbjct: 5   RPDGRQPNQLRPISFQREFTKFATGSVLARSGDTQVLCTVSIQPGVPKFLQFTGQGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE +  +  GR+QEIQR+IGR+LRS +D++ LG R II+D DV+QA
Sbjct: 65  EYRMLPGATPQRQERELM--KLSGRTQEIQRLIGRSLRSCLDMNLLGERTIIVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRT +ITG +VAL D L  +   + + + S ++   VAA+S G+L G P +DL+Y E
Sbjct: 123 DAGTRTTSITGGFVALADALDKLVK-NGELEQSPIVS-QVAAVSVGLLEGEPFLDLNYPE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   +VD N VM ++  I+E+QG+AE  +FS+     +L++A+  I +L++ Q+  +
Sbjct: 181 DVAAEVDFNVVMKENLSIIEMQGTAEEGSFSRTQLNQILDVAEKGIKELLEFQRQAL 237


>gi|145222946|ref|YP_001133624.1| ribonuclease PH [Mycobacterium gilvum PYR-GCK]
 gi|315443409|ref|YP_004076288.1| RNAse PH [Mycobacterium sp. Spyr1]
 gi|189043767|sp|A4T8F7|RNPH_MYCGI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145215432|gb|ABP44836.1| RNAse PH [Mycobacterium gilvum PYR-GCK]
 gi|315261712|gb|ADT98453.1| RNAse PH [Mycobacterium sp. Spyr1]
          Length = 260

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/237 (45%), Positives = 159/237 (67%), Gaps = 1/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R +++TR  + +  GS LV+FG+T ++ TA++ E VP W + +  GW+TA
Sbjct: 4   REDGRLDDELRPVTITRGFTTHPAGSVLVEFGETRVMCTASVTEGVPRWRKGSGQGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R  RE+V GR GGR+QEI R++GR+LR+ +DL+ALG   I IDCDV+QA
Sbjct: 64  EYAMLPAATHDRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAFVALSDAVTYL-GAAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYTE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  +VD N V TD+G +VE+QG+ E ATF +     ML+ A      L ++Q+  +
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKMLDAAMAACDQLFEIQRAAL 239


>gi|282855012|ref|ZP_06264344.1| tRNA nucleotidyltransferase [Propionibacterium acnes J139]
 gi|282581600|gb|EFB86985.1| tRNA nucleotidyltransferase [Propionibacterium acnes J139]
 gi|314924268|gb|EFS88099.1| ribonuclease PH [Propionibacterium acnes HL001PA1]
 gi|315106207|gb|EFT78183.1| ribonuclease PH [Propionibacterium acnes HL030PA1]
          Length = 254

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/237 (45%), Positives = 155/237 (65%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ + R     AEGS LV FG T +L  A++ E VP W + +  GW+TA
Sbjct: 16  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+ GGR+ EI R++GR+LR+VVD  ALG   II+DCDV+QA
Sbjct: 76  EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +        +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 193

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VM+ +G  VE+QG+AE   F+++    +L+LA    A L + Q + +
Sbjct: 194 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEAL 250


>gi|315104464|gb|EFT76440.1| ribonuclease PH [Propionibacterium acnes HL050PA2]
          Length = 254

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/237 (45%), Positives = 155/237 (65%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ + R     AEGS LV FG T +L  A++ E VP W + +  GW+TA
Sbjct: 16  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+ GGR+ EI R++GR+LR+VVD  ALG   II+DCDV+QA
Sbjct: 76  EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +        +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 193

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VM+ +G  VE+QG+AE   F+++    +L+LA    A L + Q + +
Sbjct: 194 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEAL 250


>gi|289425019|ref|ZP_06426798.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK187]
 gi|289154718|gb|EFD03404.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK187]
 gi|313763384|gb|EFS34748.1| ribonuclease PH [Propionibacterium acnes HL013PA1]
 gi|313814692|gb|EFS52406.1| ribonuclease PH [Propionibacterium acnes HL059PA1]
 gi|313828238|gb|EFS65952.1| ribonuclease PH [Propionibacterium acnes HL063PA2]
 gi|314914538|gb|EFS78369.1| ribonuclease PH [Propionibacterium acnes HL005PA4]
 gi|314917606|gb|EFS81437.1| ribonuclease PH [Propionibacterium acnes HL050PA1]
 gi|314919638|gb|EFS83469.1| ribonuclease PH [Propionibacterium acnes HL050PA3]
 gi|314930289|gb|EFS94120.1| ribonuclease PH [Propionibacterium acnes HL067PA1]
 gi|314957645|gb|EFT01748.1| ribonuclease PH [Propionibacterium acnes HL002PA1]
 gi|314968972|gb|EFT13070.1| ribonuclease PH [Propionibacterium acnes HL037PA1]
 gi|315098009|gb|EFT69985.1| ribonuclease PH [Propionibacterium acnes HL059PA2]
 gi|315102645|gb|EFT74621.1| ribonuclease PH [Propionibacterium acnes HL046PA1]
 gi|315110460|gb|EFT82436.1| ribonuclease PH [Propionibacterium acnes HL030PA2]
 gi|327451224|gb|EGE97878.1| ribonuclease PH [Propionibacterium acnes HL087PA3]
 gi|327452581|gb|EGE99235.1| ribonuclease PH [Propionibacterium acnes HL083PA2]
 gi|328751977|gb|EGF65593.1| ribonuclease PH [Propionibacterium acnes HL025PA2]
 gi|328754779|gb|EGF68395.1| ribonuclease PH [Propionibacterium acnes HL087PA1]
          Length = 254

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/237 (45%), Positives = 155/237 (65%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ + R     AEGS LV FG T +L  A++ E VP W + +  GW+TA
Sbjct: 16  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+ GGR+ EI R++GR+LR+VVD  ALG   II+DCDV+QA
Sbjct: 76  EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +        +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 193

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VM+ +G  VE+QG+AE   F+++    +L+LA    A L + Q + +
Sbjct: 194 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEAL 250


>gi|304438692|ref|ZP_07398630.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304368341|gb|EFM22028.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 248

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 114/241 (47%), Positives = 158/241 (65%), Gaps = 13/241 (5%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R+ +Q+R + + R   +YA+GS L++ G T ++  AT+EE+VP +++ T  GW+TAEY M
Sbjct: 7   RRADQLRPVRIERGYQRYADGSALIETGHTRVVCAATVEERVPFFLKGTGTGWVTAEYSM 66

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP +   R  REAV G Q GR+QEIQR+IGRALR+VVD  ALG R I IDCDV+QADGGT
Sbjct: 67  LPGAGAERTAREAVRGHQSGRTQEIQRLIGRALRAVVDTKALGERTIHIDCDVLQADGGT 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVL--KGHVAAISCGMLC-GYPIVDLDYGED 182
           RTA++TGA+VAL      +E C++ +    +   + +VAA+S G+     P++DL Y ED
Sbjct: 127 RTASVTGAFVAL------VEACASFYAKRGIFPVRDYVAAVSVGINAENEPLLDLCYEED 180

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK----DVI 238
           S   VD N VMT +G  VEVQG+ E   F++    A+L+L +  I  LI  QK    DV+
Sbjct: 181 SAAMVDMNIVMTGAGVFVEVQGTGEGRAFARKELNALLDLGEQGIRTLIDQQKVALGDVL 240

Query: 239 S 239
           S
Sbjct: 241 S 241


>gi|28493589|ref|NP_787750.1| ribonuclease PH [Tropheryma whipplei str. Twist]
 gi|28572785|ref|NP_789565.1| ribonuclease PH [Tropheryma whipplei TW08/27]
 gi|28410918|emb|CAD67303.1| ribonuclease PH [Tropheryma whipplei TW08/27]
 gi|28476631|gb|AAO44719.1| ribonuclease PH [Tropheryma whipplei str. Twist]
          Length = 256

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/234 (45%), Positives = 150/234 (64%), Gaps = 2/234 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R + R  +++R + + R  + YAEGS L+ FG+T +L  AT +  VP ++R  + GWIT
Sbjct: 20  LRKNSRAHDEIRPVKIIRGWNIYAEGSALIAFGNTRVLCNATFQRGVPPFLRGQRSGWIT 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRS   R  RE+V G+  GRS EI R+IGR++R+++D  AL    II+DCDV+Q
Sbjct: 80  AEYAMLPRSGTERSDRESVKGKISGRSHEISRLIGRSMRAILDRYALEENTIILDCDVLQ 139

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG+++AL+D L   ++   K      L   V+A+S G++     +DLDY 
Sbjct: 140 ADGGTRTAAITGSYIALYDALVWAKN--QKILSKHPLTDSVSAVSVGLVGDQIFLDLDYS 197

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           EDS    D N V T SG +VE+QG+AE++ FS   F  M+ LAK     L ++Q
Sbjct: 198 EDSNAQADINLVFTGSGKLVEIQGTAEKSPFSYGQFEQMMELAKTGCQALKEIQ 251


>gi|314967394|gb|EFT11493.1| ribonuclease PH [Propionibacterium acnes HL082PA2]
 gi|315093635|gb|EFT65611.1| ribonuclease PH [Propionibacterium acnes HL060PA1]
 gi|327325475|gb|EGE67279.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL103PA1]
          Length = 244

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/237 (45%), Positives = 155/237 (65%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ + R     AEGS LV FG T +L  A++ E VP W + +  GW+TA
Sbjct: 6   RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+ GGR+ EI R++GR+LR+VVD  ALG   II+DCDV+QA
Sbjct: 66  EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +        +S+ + G V AIS G++ G P++DL Y E
Sbjct: 126 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VM+ +G  VE+QG+AE   F+++    +L+LA    A L + Q + +
Sbjct: 184 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEAL 240


>gi|288553636|ref|YP_003425571.1| ribonuclease PH [Bacillus pseudofirmus OF4]
 gi|288544796|gb|ADC48679.1| ribonuclease PH [Bacillus pseudofirmus OF4]
          Length = 251

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/236 (47%), Positives = 155/236 (65%), Gaps = 3/236 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GRQ N++R + L     K+ EGS L+  GDT ++ TA++EE+VP ++R    GWIT
Sbjct: 1   MRSDGRQVNELRAVQLDTDYLKHPEGSVLISMGDTKVICTASIEERVPPFMRGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+++DL  LG R I IDCDVIQ
Sbjct: 61  AEYSMLPRATEQRTIRESSKGKVTGRTMEIQRLIGRSLRTILDLDQLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VAL   +            S  +K ++AA+S G+   +  ++DL Y
Sbjct: 121 ADGGTRTASITGAFVALSIAVNKA--VERGLIKSWPIKDYLAAVSVGVEPTHGEVLDLCY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            ED+  +VD N +MT +   VE+QG+ E ATFS++    +L+LA+  I +LI  QK
Sbjct: 179 VEDAAAEVDMNVIMTGAHQFVELQGTGEEATFSREQLNQLLDLAEHGIDELISHQK 234


>gi|227504000|ref|ZP_03934049.1| ribonuclease PH [Corynebacterium striatum ATCC 6940]
 gi|227199394|gb|EEI79442.1| ribonuclease PH [Corynebacterium striatum ATCC 6940]
          Length = 245

 Score =  209 bits (532), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/234 (44%), Positives = 156/234 (66%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +QMR + +TR  +    GS LV+FG+T ++ TA++E  VP + +++  GW+TA
Sbjct: 9   RADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEFGVPRFKKDSGEGWLTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R+ RE++ G+  GR+ EI R++GR+LR+ VDLS LG   I +DCDV+QA
Sbjct: 69  EYSMLPAATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLSELGENTIQLDCDVLQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +++++  S      + L   VAA+S G++ G   +DL Y E
Sbjct: 129 DGGTRTASITGAYVALADAIEYLK--SEGVVPGEPLLDPVAAVSVGIIDGQICLDLPYEE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  +VD N VM + G  VE+QG+ E   F +D   +ML++A+    +LI+ QK
Sbjct: 187 DSRAEVDLNVVMQEGGDFVEIQGTGEHGLFGRDELNSMLDVAQKGCEELIEAQK 240


>gi|254421303|ref|ZP_05035021.1| ribonuclease PH [Synechococcus sp. PCC 7335]
 gi|196188792|gb|EDX83756.1| ribonuclease PH [Synechococcus sp. PCC 7335]
          Length = 241

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 106/241 (43%), Positives = 157/241 (65%), Gaps = 4/241 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   RQ +Q+R     R+ ++Y+ GS L   G+T +L TA++ E VP +++++  GW+TA
Sbjct: 5   RPDQRQPDQLRPFKFERQFTQYSAGSVLAHCGNTRVLCTASVLEGVPRFLKDSGQGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R  RE +  +  GR+QEIQR+IGR+LR+ +D+ ALG R I ID DV+QA
Sbjct: 65  EYRMLPGSTQTRKSREFM--KLSGRTQEIQRLIGRSLRAALDMEALGERTITIDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRT +ITGA+VAL D + H+   +N+   S  L+  +AA S G++ G P +DL+Y E
Sbjct: 123 DGGTRTTSITGAYVALEDAIAHLIK-TNELTTSP-LRHQIAATSVGLIEGDPFLDLNYPE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D   D+D N VM +    +EVQG+AE  +F++    AML  A+  I+ L+++QK  +S  
Sbjct: 181 DFAADIDFNVVMNEKLEFIEVQGTAEAGSFTRSQLNAMLEYAEKGISQLMQIQKATLSES 240

Query: 242 V 242
           +
Sbjct: 241 L 241


>gi|61216045|sp|Q83FT1|RNPH_TROWT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61216046|sp|Q83HF6|RNPH_TROW8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
          Length = 247

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 106/234 (45%), Positives = 150/234 (64%), Gaps = 2/234 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R + R  +++R + + R  + YAEGS L+ FG+T +L  AT +  VP ++R  + GWIT
Sbjct: 11  LRKNSRAHDEIRPVKIIRGWNIYAEGSALIAFGNTRVLCNATFQRGVPPFLRGQRSGWIT 70

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRS   R  RE+V G+  GRS EI R+IGR++R+++D  AL    II+DCDV+Q
Sbjct: 71  AEYAMLPRSGTERSDRESVKGKISGRSHEISRLIGRSMRAILDRYALEENTIILDCDVLQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG+++AL+D L   ++   K      L   V+A+S G++     +DLDY 
Sbjct: 131 ADGGTRTAAITGSYIALYDALVWAKN--QKILSKHPLTDSVSAVSVGLVGDQIFLDLDYS 188

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           EDS    D N V T SG +VE+QG+AE++ FS   F  M+ LAK     L ++Q
Sbjct: 189 EDSNAQADINLVFTGSGKLVEIQGTAEKSPFSYGQFEQMMELAKTGCQALKEIQ 242


>gi|296170279|ref|ZP_06851870.1| tRNA nucleotidyltransferase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895002|gb|EFG74721.1| tRNA nucleotidyltransferase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 259

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 105/238 (44%), Positives = 156/238 (65%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  + +  GS L++FG T ++ TA++ + VP W + +  GW+TA
Sbjct: 4   REDGRLDDELRPVVITRGFTDHPAGSVLIEFGHTKVMCTASVTDGVPRWRKGSGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V GR  GR+QEI R+IGR+LR+ +DL+ALG   I +DCDV+QA
Sbjct: 64  EYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAFVALADAVTYLA-AAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D+  +VD N V TD+G +VEVQG+ E ATF +     +L++A      L   Q++ ++
Sbjct: 183 DARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDVALAACDKLFAAQREALA 240


>gi|254445470|ref|ZP_05058946.1| ribonuclease PH [Verrucomicrobiae bacterium DG1235]
 gi|198259778|gb|EDY84086.1| ribonuclease PH [Verrucomicrobiae bacterium DG1235]
          Length = 252

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/243 (44%), Positives = 152/243 (62%), Gaps = 4/243 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGWI 59
           R  GR+ + +REIS     +  A GS LV FGDT ++  A LE++VP W+R  N   GW+
Sbjct: 6   RPDGRKCDALREISFQADFAANATGSVLVSFGDTKVICGAMLEKRVPGWMRAQNVSGGWL 65

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           TAEY MLP ST +R +R+A  G+Q GR  EIQR+IGR+LR+V+DL  L    + +DCDV+
Sbjct: 66  TAEYSMLPYSTLDRKQRDASRGKQDGRGVEIQRLIGRSLRAVIDLQKLPGHTLWVDCDVL 125

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTRTA+ITGA++A    +Q + D     +     +  +AA+S G+  G P++DL Y
Sbjct: 126 QADGGTRTASITGAYLAARLAVQKLIDAGTLKE--NPFRDSIAAVSVGIYEGEPVLDLPY 183

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED    VD N VMT  G  VE+QG+ E ATFS+D    ++ LAK  I +L  +Q   ++
Sbjct: 184 IEDRDASVDFNVVMTGKGEFVELQGTGEEATFSEDELAKLIGLAKKGIKELSSMQAAFLT 243

Query: 240 NEV 242
             +
Sbjct: 244 QRL 246


>gi|328466632|gb|EGF37767.1| ribonuclease PH [Listeria monocytogenes 1816]
          Length = 228

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 107/230 (46%), Positives = 152/230 (66%), Gaps = 3/230 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ N +R I +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 1   MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA++A+   +  +++     +    +K  +AA S G+L  G  ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFP--VKDFLAATSVGVLEEGGTVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
            EDS   VD N +MT SG  VE+QG+ E ATFS+     ++ L K  +A+
Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKELAN 228


>gi|227502998|ref|ZP_03933047.1| ribonuclease PH [Corynebacterium accolens ATCC 49725]
 gi|227076059|gb|EEI14022.1| ribonuclease PH [Corynebacterium accolens ATCC 49725]
          Length = 242

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 105/234 (44%), Positives = 154/234 (65%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +QMR + +TR  +    GS LV+FG+T ++ TA++E  VP + R++  GW+TA
Sbjct: 6   RADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R+ RE++ G+  GR+ EI R++GR+LR+ VDL  LG   I +DCDV+QA
Sbjct: 66  EYAMLPSATHDRMPRESMRGKVKGRTHEISRLVGRSLRAAVDLEELGENTIQLDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D + H++  S      + L   +AA+S G++ G   +DL Y E
Sbjct: 126 DGGTRTASITGAYVALADAIAHLK--SEGVVPGEPLLDPIAAVSVGIIDGEICLDLPYEE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  +VD N VM +SG  VE+QG+ E   F ++    ML++A+   ++LI  QK
Sbjct: 184 DSRAEVDLNVVMQESGDFVEIQGTGEHGLFGREQLNGMLDVAQKGCSELIAAQK 237


>gi|295399427|ref|ZP_06809409.1| ribonuclease PH [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978893|gb|EFG54489.1| ribonuclease PH [Geobacillus thermoglucosidasius C56-YS93]
          Length = 256

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 108/239 (45%), Positives = 157/239 (65%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+  Q+R + + +   K+AEGS  +  GDT ++ TA++++KVP ++R    GWIT
Sbjct: 1   MRVDGRENKQLRPVHMEKHFIKHAEGSVFITVGDTKVICTASIDDKVPPFMRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALRSVV+L  LG + + IDCDVIQ
Sbjct: 61  AEYAMLPRATEQRNVRESSKGKVSGRTMEIQRLIGRALRSVVNLDKLGEKTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VA+      + +     +L   +   +AA S G+   + I+ DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFAKLVEEKKLDELP--VNDFLAATSVGIDPEHGIILDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED+  +VD N VMT +G  VE+QG+ E ATFS++    +L+ A+  I  LI +Q+  +
Sbjct: 179 TEDARAEVDMNVVMTGAGRFVEIQGTGEEATFSREQLNELLDTAEVGIRQLIDIQRKTL 237


>gi|312110014|ref|YP_003988330.1| ribonuclease PH [Geobacillus sp. Y4.1MC1]
 gi|311215115|gb|ADP73719.1| ribonuclease PH [Geobacillus sp. Y4.1MC1]
          Length = 256

 Score =  209 bits (531), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 108/239 (45%), Positives = 157/239 (65%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+  Q+R + + +   K+AEGS  +  GDT ++ TA++++KVP ++R    GWIT
Sbjct: 1   MRVDGRENKQLRPVHMEKHFIKHAEGSVFITVGDTKVICTASIDDKVPPFMRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALRSVV+L  LG + + IDCDVIQ
Sbjct: 61  AEYAMLPRATEQRNVRESSKGKVSGRTMEIQRLIGRALRSVVNLDKLGEKTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDY 179
           ADGGTRTA+ITGA+VA+      + +     +L   +   +AA S G+   + I+ DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFAKLVEEKKLDELP--VNDFLAATSVGIDPEHGIILDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED+  +VD N VMT +G  VE+QG+ E ATFS++    +L+ A+  I  LI +Q+  +
Sbjct: 179 TEDARAEVDMNVVMTGAGRFVEIQGTGEEATFSREQLNELLDTAEVGIRQLIDIQRKTL 237


>gi|182416017|ref|YP_001821083.1| ribonuclease PH [Opitutus terrae PB90-1]
 gi|177843231|gb|ACB77483.1| ribonuclease PH [Opitutus terrae PB90-1]
          Length = 260

 Score =  209 bits (531), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 108/241 (44%), Positives = 153/241 (63%), Gaps = 4/241 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGWI 59
           R  GR  +Q+R I+    ++ YA GS LV FG T ++  A +E KVP+W+R    + GW+
Sbjct: 17  RSDGRHPDQLRPITFEANIAPYATGSVLVSFGSTRVICAAMIEPKVPLWMRQQGVRGGWL 76

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           TAEY MLP ST +R  R+   G+  GR+ EIQR+IGR+LR+VVDL  LG   + IDCDV+
Sbjct: 77  TAEYSMLPYSTLDRKPRDISKGKLDGRTVEIQRLIGRSLRAVVDLMKLGENTLWIDCDVL 136

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTRTA+ITGA++A    +Q + D + K   + VL   VAA+S G+  G  ++DL+Y
Sbjct: 137 QADGGTRTASITGAYLATRLAVQRLVD-AGKLAENPVLD-SVAAVSAGVCGGQELLDLNY 194

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED   +VDAN VMT  G  VE+Q S E ATF+ +   ++  LA+  + ++  LQ   ++
Sbjct: 195 VEDKDAEVDANIVMTGRGQFVEMQSSGEEATFTHEQLLSLTALAQKGLKEIAALQTAFLT 254

Query: 240 N 240
            
Sbjct: 255 K 255


>gi|145593656|ref|YP_001157953.1| ribonuclease PH [Salinispora tropica CNB-440]
 gi|189043773|sp|A4X3X5|RNPH_SALTO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145302993|gb|ABP53575.1| RNAse PH [Salinispora tropica CNB-440]
          Length = 241

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 115/239 (48%), Positives = 159/239 (66%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  + +R ++LTR  S + EGS LV+FG T +L TA++ E VP W + +  GW+TA
Sbjct: 3   RPDGRLPDHLRPVTLTRGWSTHPEGSVLVEFGATRVLCTASVTEGVPRWRKGSGLGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+ +DL ALG   I++DCDV+QA
Sbjct: 63  EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRASIDLKALGENSIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMED-CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTAAITGA+VALHD +  +    S   +   V+   VAA+S G++ G P +DL+Y 
Sbjct: 123 DGGTRTAAITGAYVALHDAVTWLAARRSLAGRPETVMHRSVAAVSVGVVAGEPRLDLNYA 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED++ +VD N V T +G  VEVQG+ E   FS+    A+L+LA     +L + Q+  +S
Sbjct: 183 EDASAEVDLNVVCTGAGDFVEVQGTGEAGVFSRGQLDALLDLAVAGCVELAEAQRKALS 241


>gi|227548661|ref|ZP_03978710.1| ribonuclease PH [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079275|gb|EEI17238.1| ribonuclease PH [Corynebacterium lipophiloflavum DSM 44291]
          Length = 246

 Score =  208 bits (530), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 105/234 (44%), Positives = 153/234 (65%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR  ++MR + +TR  +    GS LV+FG T ++ TA++E  VP + +++  GW+TA
Sbjct: 10  RLDGRAFDEMRPVRITRGFTTNPAGSVLVEFGATRVMCTASVEVGVPRFKKDSGEGWLTA 69

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R+ RE++ G+  GR+ EI R++GR+LR+ VDL+ LG   I +DCDV+QA
Sbjct: 70  EYAMLPSATHERMPRESMKGKVKGRTHEISRLVGRSLRAAVDLAQLGENTIQLDCDVLQA 129

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  + +        + L   VAA+S G++ G+  +DL Y E
Sbjct: 130 DGGTRTASITGAYVALADAIAFLSE--RGLVPGEPLLAPVAAVSAGLVDGHVALDLPYEE 187

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  +VD N VM DSG+ VE+QG+ E   F +    AML +A+    +LI+ QK
Sbjct: 188 DSRAEVDLNVVMNDSGNFVEIQGTGEHGLFGRAELDAMLTVAEKGCRELIEAQK 241


>gi|291485267|dbj|BAI86342.1| ribonuclease PH [Bacillus subtilis subsp. natto BEST195]
          Length = 245

 Score =  208 bits (530), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 112/243 (46%), Positives = 159/243 (65%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GRQ +++R I+       + EGS L+  G+T ++  A++E++VP ++R    GWIT
Sbjct: 1   MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL  LG R I IDCDVIQ
Sbjct: 61  AEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLDY 179
           ADGGTRTA+ITGA++A+   +  +       + S +    +AAIS G+     I +DL+Y
Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLIKAGT-IKTSPITD-FLAAISVGIDKEQGILLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS+ +VD N +MT SG  VE+QG+ E ATFS++    +L LA+  I +LI  QK+V+ 
Sbjct: 179 EEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLG 238

Query: 240 NEV 242
           + +
Sbjct: 239 DSL 241


>gi|288921256|ref|ZP_06415540.1| ribonuclease PH [Frankia sp. EUN1f]
 gi|288347346|gb|EFC81639.1| ribonuclease PH [Frankia sp. EUN1f]
          Length = 256

 Score =  208 bits (530), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 110/241 (45%), Positives = 152/241 (63%), Gaps = 7/241 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR+ +Q+R+I++ R   ++AEGS L+  G T +L  A++ E VP W + +  GW+T
Sbjct: 2   IRVDGRKTDQLRDITIVRGWQEHAEGSALISAGLTRVLCAASVTEGVPRWRKGSGLGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+ +DL ALG   I IDCDV+ 
Sbjct: 62  AEYSMLPRATHTRNDRESVRGRIGGRTHEISRLIGRSLRAAIDLKALGENTIAIDCDVLL 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D  + +   S        +   V A+S G++ G P++DL Y 
Sbjct: 122 ADGGTRTAAITGAYVALADACRWLGRPS-------AIVTSVCAVSVGIVKGVPMLDLAYT 174

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDST D D N V T +G  VEVQG+AE   F +     +LNLA      L ++Q   ++ 
Sbjct: 175 EDSTADTDMNVVCTGTGGFVEVQGTAEGTPFDRAALDELLNLATAGCNRLTEIQNAALAQ 234

Query: 241 E 241
            
Sbjct: 235 P 235


>gi|296137098|ref|YP_003644340.1| ribonuclease PH [Thiomonas intermedia K12]
 gi|294341380|emb|CAZ89797.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Thiomonas
           sp. 3As]
 gi|295797220|gb|ADG32010.1| ribonuclease PH [Thiomonas intermedia K12]
          Length = 243

 Score =  208 bits (530), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 119/234 (50%), Positives = 159/234 (67%), Gaps = 2/234 (0%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
           GR  + +R I++ R  +++AEGS LV FG T +L TA++EE+VP   R +  GW+TAEYG
Sbjct: 10  GRGLSALRAIAIERHFTRHAEGSVLVAFGHTRVLCTASVEERVPPHKRGSGQGWVTAEYG 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           MLPR+T  R +REA  G+Q GR++EIQR+IGR+LR+V D SALG RQI +DCDV+QADGG
Sbjct: 70  MLPRATHTRGEREAKRGKQQGRTEEIQRLIGRSLRAVFDFSALGERQITLDCDVLQADGG 129

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
           TRTAAITGA VA  D  Q +       Q    ++  VAA+S G+L     +DLDY EDS 
Sbjct: 130 TRTAAITGAAVAAWDACQWLMAQGRIPQ--NPMRQLVAAVSVGLLGDDYRLDLDYAEDSQ 187

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            D D N V T  G ++EVQG+AE A FS+     M++LA+  IA+L+ LQ+  +
Sbjct: 188 CDTDMNVVGTADGALIEVQGTAEGAPFSRQQLDGMIDLAQRGIAELVALQRQAL 241


>gi|16079889|ref|NP_390715.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310778|ref|ZP_03592625.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315103|ref|ZP_03596908.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221320021|ref|ZP_03601315.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221324304|ref|ZP_03605598.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321312370|ref|YP_004204657.1| ribonuclease PH [Bacillus subtilis BSn5]
 gi|133188|sp|P28619|RNPH_BACSU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|47168514|pdb|1OYP|A Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168515|pdb|1OYP|B Chain B, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168516|pdb|1OYP|C Chain C, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168517|pdb|1OYP|D Chain D, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168518|pdb|1OYP|E Chain E, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168519|pdb|1OYP|F Chain F, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168520|pdb|1OYR|A Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168521|pdb|1OYR|B Chain B, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168522|pdb|1OYR|C Chain C, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168523|pdb|1OYR|D Chain D, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168524|pdb|1OYR|E Chain E, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168525|pdb|1OYR|F Chain F, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|143444|gb|AAA22705.1| RNase PH [Bacillus subtilis]
 gi|1770059|emb|CAA99554.1| RNase PH [Bacillus subtilis]
 gi|2635302|emb|CAB14797.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. 168]
 gi|320018644|gb|ADV93630.1| ribonuclease PH [Bacillus subtilis BSn5]
          Length = 245

 Score =  208 bits (529), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 111/243 (45%), Positives = 158/243 (65%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GRQ +++R I+       + EGS L+  G+T ++  A++E++VP ++R    GWIT
Sbjct: 1   MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL  LG R I IDCDVIQ
Sbjct: 61  AEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLDY 179
           ADGGTRTA+ITGA++A+   +  +         +  +   +AAIS G+     I +DL+Y
Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLIKAGTI--KTNPITDFLAAISVGIDKEQGILLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS+ +VD N +MT SG  VE+QG+ E ATFS++    +L LA+  I +LI  QK+V+ 
Sbjct: 179 EEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLG 238

Query: 240 NEV 242
           + +
Sbjct: 239 DSL 241


>gi|306836769|ref|ZP_07469730.1| tRNA nucleotidyltransferase [Corynebacterium accolens ATCC 49726]
 gi|304567356|gb|EFM42960.1| tRNA nucleotidyltransferase [Corynebacterium accolens ATCC 49726]
          Length = 242

 Score =  208 bits (529), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 104/234 (44%), Positives = 154/234 (65%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +QMR + +TR  +    GS LV+FG+T ++ TA++E  VP + R++  GW+TA
Sbjct: 6   RADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R+ RE++ G+  GR+ EI R++GR+LR+ VDL  LG   I +DCDV+QA
Sbjct: 66  EYAMLPSATHDRMPRESMRGKVKGRTHEISRLVGRSLRAAVDLEELGENTIQLDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D + H++  +      + L   +AA+S G++ G   +DL Y E
Sbjct: 126 DGGTRTASITGAYVALADAIAHLK--AEGVVPGEPLLDPIAAVSVGIIDGEICLDLPYEE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  +VD N VM +SG  VE+QG+ E   F ++    ML++A+   ++LI  QK
Sbjct: 184 DSRAEVDLNVVMQESGDFVEIQGTGEHGLFGREQLNGMLDVAQKGCSELIAAQK 237


>gi|52786716|ref|YP_092545.1| ribonuclease PH [Bacillus licheniformis ATCC 14580]
 gi|161760685|ref|YP_080129.2| ribonuclease PH [Bacillus licheniformis ATCC 14580]
 gi|319647246|ref|ZP_08001468.1| ribonuclease PH [Bacillus sp. BT1B_CT2]
 gi|81609007|sp|Q65GG2|RNPH_BACLD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|52349218|gb|AAU41852.1| Rph [Bacillus licheniformis ATCC 14580]
 gi|145903088|gb|AAU24491.2| ribonuclease PH [Bacillus licheniformis ATCC 14580]
 gi|317390593|gb|EFV71398.1| ribonuclease PH [Bacillus sp. BT1B_CT2]
          Length = 246

 Score =  207 bits (528), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 109/241 (45%), Positives = 156/241 (64%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+ N++R +++      + EGS L+  G T ++  A++E++VP ++R    GWIT
Sbjct: 1   MRYDGRKNNELRPVTMDLDFITHPEGSVLITVGGTKVICNASVEDRVPPFLRGEGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL  LG R I IDCDVIQ
Sbjct: 61  AEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDY 179
           ADGGTRTA+ITGA+ A+   +  + +     ++   +   +AA S G+      I+DL+Y
Sbjct: 121 ADGGTRTASITGAFTAMALAVGRLVEKGALKEMP--ITDFLAATSVGIDKEKGLILDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  +VD N VMT  G  VE+QG+ E ATFS+     +L LA+  IA+L++ QK+V+ 
Sbjct: 179 QEDSAAEVDMNVVMTGEGRFVELQGTGEEATFSRSELDGLLELAEKGIAELLEKQKEVLG 238

Query: 240 N 240
           +
Sbjct: 239 D 239


>gi|159036643|ref|YP_001535896.1| ribonuclease PH [Salinispora arenicola CNS-205]
 gi|189043771|sp|A8M4I1|RNPH_SALAI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157915478|gb|ABV96905.1| ribonuclease PH [Salinispora arenicola CNS-205]
          Length = 241

 Score =  207 bits (528), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 115/239 (48%), Positives = 159/239 (66%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  + +R ++LTR  S + EGS LV+FG T +L TA++ E VP W + +  GW+TA
Sbjct: 3   RPDGRLPDHLRPVTLTRGWSTHPEGSVLVEFGATRVLCTASVTEGVPRWRKGSGLGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+ +DL ALG   +++DCDV+QA
Sbjct: 63  EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRASIDLKALGENSVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMED-CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTAAITGA+VAL+D +  +    S   +   V+   VAA+S G++ G P +DL+Y 
Sbjct: 123 DGGTRTAAITGAYVALYDAVTWLAARRSLAGRPENVMHRSVAAVSVGVVAGEPRLDLNYD 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+T +VD N V T +G  VEVQG+ E   FS+    A+L+LA     DL + Q+  +S
Sbjct: 183 EDATAEVDLNVVCTGTGDFVEVQGTGEAGVFSRGQLDALLDLAVAGCLDLAEAQRKALS 241


>gi|183984013|ref|YP_001852304.1| ribonuclease RphA [Mycobacterium marinum M]
 gi|183177339|gb|ACC42449.1| ribonuclease RphA [Mycobacterium marinum M]
          Length = 276

 Score =  207 bits (528), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 108/238 (45%), Positives = 158/238 (66%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+++++R + +TR  ++   GS L++FG T ++ TA++ E VP W + +  GW+TA
Sbjct: 21  REDGRRDDELRPVVITRGFTENPAGSVLIEFGRTKVMCTASVTEGVPRWRKGSGLGWLTA 80

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V GR GGR+QEI R++GR+LR+ +DL+ALG   I +DCDV+QA
Sbjct: 81  EYAMLPSATHTRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAVDCDVLQA 140

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 141 DGGTRTAAITGAYVALADAVNYLA-AAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYEE 199

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VEVQG+ E ATF +     +L++A      L   Q+D ++
Sbjct: 200 DSRAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDMALGACDTLFAAQRDALA 257


>gi|118467865|ref|YP_889156.1| ribonuclease PH [Mycobacterium smegmatis str. MC2 155]
 gi|166228292|sp|A0R1W8|RNPH_MYCS2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|118169152|gb|ABK70048.1| ribonuclease PH [Mycobacterium smegmatis str. MC2 155]
          Length = 259

 Score =  207 bits (528), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 110/237 (46%), Positives = 156/237 (65%), Gaps = 1/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  + +  GS LV+FG T ++ TA++ E VP W + +  GW+TA
Sbjct: 4   REDGRLDDELRPVVITRGFTSHPAGSVLVEFGQTRVMCTASVTEGVPRWRKGSGQGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R  RE+V GR GGR+QEI R+IGR+LR+ +DL+ALG   I IDCDV+QA
Sbjct: 64  EYAMLPAATHDRSDRESVKGRIGGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +   + +    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALSDAVTWLA-AAGRLSDPRPLSCAIAAVSVGVVDGRVRVDLPYSE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  +VD N V TD+G +VE+QG+ E ATF +     ML+ A      L  LQ++ +
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKMLDAALGATEQLFVLQREAL 239


>gi|311741212|ref|ZP_07715036.1| tRNA nucleotidyltransferase [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311303382|gb|EFQ79461.1| tRNA nucleotidyltransferase [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 242

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/234 (44%), Positives = 153/234 (65%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +QMR + +TR  +    GS LV+FG+T ++ TA++E  VP + R++  GW+TA
Sbjct: 6   RADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEYGVPRFKRDSGEGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R+ RE++ G+  GR+ EI R++GR+LR+ VDL  LG   I +DCDV+QA
Sbjct: 66  EYAMLPSATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLEELGENTIQLDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D + H++  +      + L   +AA+S G++ G   +DL Y E
Sbjct: 126 DGGTRTASITGAYVALADAIAHLK--AEGVVPGEPLLDPIAAVSVGIIDGEICLDLPYEE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  +VD N VM +SG  VE+QG+ E   F ++    ML++A+    +LI  QK
Sbjct: 184 DSRAEVDLNVVMQESGDFVEIQGTGEHGLFGREELNEMLDVAQKGCRELIAAQK 237


>gi|126656098|ref|ZP_01727482.1| ribonuclease PH [Cyanothece sp. CCY0110]
 gi|126622378|gb|EAZ93084.1| ribonuclease PH [Cyanothece sp. CCY0110]
          Length = 240

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 107/241 (44%), Positives = 160/241 (66%), Gaps = 5/241 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ NQ+R ++     ++++ GS +++ G+T +L TA++E++VP ++  +  GW+TA
Sbjct: 5   RPDGRQPNQLRPVNFELNFTRFSAGSVVIECGETKVLCTASIEDRVPRFLLGSGQGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE +  +  GR+QEIQR+IGR+LRS +DL  LG R I IDCDV+QA
Sbjct: 65  EYRMLPSATQERQRRELL--KLSGRTQEIQRLIGRSLRSCIDLQQLGERSITIDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTA+ITG +VAL   +  +       Q    L+  VAAIS G++ G   +DL+Y E
Sbjct: 123 DAGTRTASITGGYVALGLAVNKLIKQGELIQ--SPLRFPVAAISVGLIEGEAFLDLNYPE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  D+D N VMT++  ++EVQG+AE  +F++     +L+LA+  I +L+ LQ  V+ NE
Sbjct: 181 DSKADIDFNVVMTENLDLIEVQGTAEENSFTRSQLNDILDLAEIGIKELVSLQNKVL-NE 239

Query: 242 V 242
           V
Sbjct: 240 V 240


>gi|320530746|ref|ZP_08031790.1| ribonuclease PH [Selenomonas artemidis F0399]
 gi|320137033|gb|EFW28971.1| ribonuclease PH [Selenomonas artemidis F0399]
          Length = 248

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 108/238 (45%), Positives = 154/238 (64%), Gaps = 9/238 (3%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R+ +Q+R + + R   +Y  GS L++ G T ++ +AT+EE+VP +++ +  GW+TAEY M
Sbjct: 7   RRPDQLRPVRIERGYQRYPAGSALIEMGHTRVVCSATVEERVPFFLKGSGTGWVTAEYAM 66

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP +   R  REA  GRQ GR+QEIQR+IGRALR+VVD  ALG R I IDCDV+QADGGT
Sbjct: 67  LPGAGTERTAREAARGRQTGRTQEIQRLIGRALRAVVDTRALGERTIHIDCDVVQADGGT 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVL--KGHVAAISCGMLC-GYPIVDLDYGED 182
           RTA+ITGA+VAL      +E C+  +    V   + + AA+S G+     P++D+ Y ED
Sbjct: 127 RTASITGAFVAL------VEACATFYTKRGVFPVRDYAAAVSVGIGAENTPLLDICYEED 180

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +   VD N VMT +G  +EVQG+ E   FS+    A+L+L +  I +LI +QK  +  
Sbjct: 181 AQAMVDMNLVMTGAGSFIEVQGTGEGRAFSRAEMNALLDLGERGIRELIDVQKRALGE 238


>gi|257056884|ref|YP_003134716.1| ribonuclease PH [Saccharomonospora viridis DSM 43017]
 gi|256586756|gb|ACU97889.1| RNAse PH [Saccharomonospora viridis DSM 43017]
          Length = 258

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 110/239 (46%), Positives = 161/239 (67%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR ++Q+RE+ +TR   ++  GS L++ G+T +L  A++ E VP W   +  GW+T
Sbjct: 2   VRVDGRDDDQLREVRITRGFQQWPAGSVLIEVGNTRVLCAASVVEGVPRWRNGSGLGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP +T  R  RE+V GR GGR+ EI R+IGR+LRS +DL+ALG   I+IDCDVIQ
Sbjct: 62  AEYSMLPSATHTRGDRESVKGRIGGRTHEISRLIGRSLRSCIDLAALGENTIVIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG +VAL D +  +   + +    + L   V+A+S G++ G   +DL Y 
Sbjct: 122 ADGGTRTAAITGGYVALADAITWL-GAAGRLADPKPLSAAVSAVSVGVVDGRVRLDLPYE 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  +VD N V TD+G ++EVQG+ E ATF++     ML+LA+   A+L ++Q + ++
Sbjct: 181 EDSRAEVDMNVVATDAGTLIEVQGTGEGATFTRSTLDKMLDLAQAGCAELARIQAEALA 239


>gi|255324313|ref|ZP_05365434.1| tRNA nucleotidyltransferase [Corynebacterium tuberculostearicum
           SK141]
 gi|255298643|gb|EET77939.1| tRNA nucleotidyltransferase [Corynebacterium tuberculostearicum
           SK141]
          Length = 242

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/234 (44%), Positives = 153/234 (65%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +QMR + +TR  +    GS LV+FG+T ++ TA++E  VP + R++  GW+TA
Sbjct: 6   RADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEYGVPRFKRDSGEGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R+ RE++ G+  GR+ EI R++GR+LR+ VDL  LG   I +DCDV+QA
Sbjct: 66  EYAMLPSATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLEELGENTIQLDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D + H++  +      + L   +AA+S G++ G   +DL Y E
Sbjct: 126 DGGTRTASITGAYVALADAIAHLK--AEGVVPGEPLLDSIAAVSVGIIDGEICLDLPYEE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  +VD N VM +SG  VE+QG+ E   F ++    ML++A+    +LI  QK
Sbjct: 184 DSRAEVDLNVVMQESGDFVEIQGTGEHGLFGREDLNEMLDVAQKGCRELIAAQK 237


>gi|269925889|ref|YP_003322512.1| ribonuclease PH [Thermobaculum terrenum ATCC BAA-798]
 gi|269789549|gb|ACZ41690.1| ribonuclease PH [Thermobaculum terrenum ATCC BAA-798]
          Length = 245

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 106/240 (44%), Positives = 157/240 (65%), Gaps = 5/240 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR+ N++R  S+      +  GS +++ G T +L  A+++E VP ++  T  GW+T
Sbjct: 6   IRVDGRKPNELRPHSIEIYPLAFPPGSAIIQCGVTKVLCAASIQEGVPKFLEGTGQGWLT 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP ST  R  RE+ +GR  GR+QEIQR+IGR+LR+ V L  +G   II+DCDV+Q
Sbjct: 66  AEYSMLPASTQTRTPRESHTGRLQGRTQEIQRLIGRSLRAAVKLDQIGEITIIVDCDVLQ 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +VA    L+ +   + +  +S      VAA+S G++ G P++DL+Y 
Sbjct: 126 ADGGTRTASITGGYVATVLALRKIFPDTYRDLVSP-----VAAVSVGIVNGTPMLDLNYA 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDST D D N V    G  +E+Q +AER +FS++   AML+LA   IA+L++ Q  V+S+
Sbjct: 181 EDSTADTDLNVVKNHLGDYIEIQATAERVSFSREELDAMLSLADKGIAELMESQSKVLSS 240


>gi|300859074|ref|YP_003784057.1| ribonuclease PH [Corynebacterium pseudotuberculosis FRC41]
 gi|300686528|gb|ADK29450.1| ribonuclease PH [Corynebacterium pseudotuberculosis FRC41]
 gi|302206777|gb|ADL11119.1| Ribonuclease PH [Corynebacterium pseudotuberculosis C231]
 gi|302331330|gb|ADL21524.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 1002]
 gi|308277022|gb|ADO26921.1| Ribonuclease PH [Corynebacterium pseudotuberculosis I19]
          Length = 247

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 108/234 (46%), Positives = 150/234 (64%), Gaps = 3/234 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +QMR + +TR  +    GS LV+FG+T ++ TA+ E  VP + R++  GW+TA
Sbjct: 11  RADGRAVDQMRTVKITRGFTTNPAGSVLVEFGNTRVMCTASAEIGVPRFKRDSGEGWLTA 70

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R  RE++ G+  GR+ EI R+IGR+LR+ VDLS LG   I IDCDV+QA
Sbjct: 71  EYAMLPAATLDRNPRESMRGKVKGRTHEISRLIGRSLRAAVDLSELGENTINIDCDVLQA 130

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D + H++           LK  VAA+S G++ G   +DL Y E
Sbjct: 131 DGGTRTASITGAYVALADAISHLQ--KQGVVPGNPLKDPVAAVSVGVIDGAVCLDLPYEE 188

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  DVD N +M + G  VE+QG+ E  TF +D    +L+ A+    +L+  QK
Sbjct: 189 DSRADVDMNVIMQN-GRFVEIQGTGEHNTFDRDELARILDFAEKGCTELVAAQK 241


>gi|311069329|ref|YP_003974252.1| ribonuclease PH [Bacillus atrophaeus 1942]
 gi|310869846|gb|ADP33321.1| ribonuclease PH [Bacillus atrophaeus 1942]
          Length = 245

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 115/246 (46%), Positives = 158/246 (64%), Gaps = 13/246 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GRQ +++R I+       + EGS L+  G+T ++  A++E++VP ++R    GWIT
Sbjct: 1   MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGEGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL  LG R I IDCDVIQ
Sbjct: 61  AEYSMLPRATNQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK-----GHVAAISCGMLCGYP-I 174
           ADGGTRTA+ITGA++A+   +        K   S VLK       +AAIS G+      +
Sbjct: 121 ADGGTRTASITGAFLAMGIAI-------GKLVKSGVLKKTPVTDFLAAISVGIDKEQGLL 173

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           +DL+Y EDS  +VD N +MT SG  VE+QG+ E ATFS++    +L+LA+  I +LI  Q
Sbjct: 174 LDLNYTEDSAAEVDMNVIMTGSGRFVELQGTGEEATFSREDLDGLLSLAEKGIQELIDKQ 233

Query: 235 KDVISN 240
           K V+ +
Sbjct: 234 KAVLGD 239


>gi|307244059|ref|ZP_07526178.1| tRNA nucleotidyltransferase [Peptostreptococcus stomatis DSM 17678]
 gi|306492583|gb|EFM64617.1| tRNA nucleotidyltransferase [Peptostreptococcus stomatis DSM 17678]
          Length = 486

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 105/239 (43%), Positives = 159/239 (66%), Gaps = 6/239 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ +Q+R +++TR  + ++ GS L++ G+T ++ TA++E+ VP +++ T  GWI+A
Sbjct: 37  RPDGRQYDQLRPVNITRNYTMHSAGSVLIEVGNTKVICTASVEDGVPGFMKGTGKGWISA 96

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +R++  GR  GRSQEIQR+IGR++RSVV+L  LG R I IDCDVIQA
Sbjct: 97  EYSMLPSATETRKRRDSSKGRVDGRSQEIQRLIGRSIRSVVNLEDLGERTIWIDCDVIQA 156

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSN--KFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           DGGTRTA+ITGA+VAL D L  +    +  K  L+ +L    AA+S G++     +D+ Y
Sbjct: 157 DGGTRTASITGAFVALADALYKLYQAGDIKKMPLTSML----AAVSVGVVDSQVCLDICY 212

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS  +VD N +M + G  +E+Q + E   F++D    +L  A+    DL+++Q+ V+
Sbjct: 213 QEDSNAEVDTNIIMNNKGQFIEIQCTGEERPFTRDEMDKILEYAEKGNRDLMRIQRRVL 271


>gi|317050733|ref|YP_004111849.1| ribonuclease PH [Desulfurispirillum indicum S5]
 gi|316945817|gb|ADU65293.1| ribonuclease PH [Desulfurispirillum indicum S5]
          Length = 244

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 2/237 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  +++R I++TR  +KYAEGS L+  G+T +L  AT+++ VP ++     GW+TAEY M
Sbjct: 5   RAPHELRPITITRNYTKYAEGSVLIAMGETIVLCNATVQKTVPRFLIGKDSGWVTAEYSM 64

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LPR+T  R +RE+  GR  GR+ EIQR+IGR+LRS++DL A+    I IDCDV+QADGGT
Sbjct: 65  LPRATDVRNRRESQQGRPSGRTMEIQRLIGRSLRSIIDLHAMSGYTITIDCDVLQADGGT 124

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           R A++ GA++AL D +  M   +        L+  VAAIS G+   +P+ DLDY EDS  
Sbjct: 125 RCASVNGAFIALADAVDSM--LAAGMIGESPLRSTVAAISVGIFNNWPLADLDYLEDSQA 182

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            VD N V T  G  VE+QG+ E   FS+     +L LA D I  +  LQ + +S ++
Sbjct: 183 MVDMNVVATGKGEFVEIQGTGESRPFSRKDHDILLELALDGIGQISALQFEQLSAQI 239


>gi|324997302|ref|ZP_08118414.1| ribonuclease PH [Pseudonocardia sp. P1]
          Length = 245

 Score =  206 bits (524), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 107/225 (47%), Positives = 150/225 (66%), Gaps = 1/225 (0%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
           +++TR   K+  GS LV+FGDT +L  A++ E VP W + +  GW+TAEY MLP ST  R
Sbjct: 1   MTITRGFQKHPAGSVLVEFGDTKVLCAASVTEGVPRWRKGSGLGWVTAEYAMLPSSTDTR 60

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
             RE+V G+ GGR+ EI R+IGR+LR+ +DL ALG   I IDCDV+QADGGTRTAAITGA
Sbjct: 61  SSRESVKGKIGGRTHEISRLIGRSLRACIDLRALGENTIAIDCDVLQADGGTRTAAITGA 120

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
           +VAL D +  + +   K    + +   VAA+S G++ G   +DL Y EDS  +VD N V 
Sbjct: 121 YVALCDAVTWLGE-HGKLTDPKPISCQVAAVSVGVVDGRVRLDLPYEEDSRAEVDTNVVA 179

Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           T++G ++EVQG+ E ATF++    AML+ A   IA + ++Q + +
Sbjct: 180 TETGTLIEVQGTGEGATFARKTLDAMLDSALAGIAGIARMQIEAL 224


>gi|156936190|ref|YP_001440106.1| hypothetical protein ESA_04089 [Cronobacter sakazakii ATCC BAA-894]
 gi|156534444|gb|ABU79270.1| hypothetical protein ESA_04089 [Cronobacter sakazakii ATCC BAA-894]
          Length = 211

 Score =  206 bits (524), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 108/212 (50%), Positives = 146/212 (68%), Gaps = 2/212 (0%)

Query: 29  LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
           LV+FGDT +L TA++EE VP +++    GWITAEYGMLPR+T  R  REA  G+QGGR+ 
Sbjct: 2   LVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRATHTRNAREAAKGKQGGRTL 61

Query: 89  EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
           EIQR+I R+LR+ VDL ALG   I +DCDVIQADGGTRTA+ITGA VAL D L  +   +
Sbjct: 62  EIQRLIARSLRAAVDLKALGEFTITLDCDVIQADGGTRTASITGACVALADALNALV-AA 120

Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
            K + +  +KG VAA+S G++ G  + DL+Y EDS  + D N VMT+ G ++EVQG+AE 
Sbjct: 121 GKLK-TNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRMIEVQGTAEG 179

Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 180 EPFTHEELLDLLALARGGIESIVASQKAALAN 211


>gi|329947440|ref|ZP_08294644.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328525190|gb|EGF52241.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 264

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 107/241 (44%), Positives = 147/241 (60%), Gaps = 2/241 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R +++TR    +AEGS LV FG T +L  A+  E VP W + +  GW+TA
Sbjct: 8   RKDGRAVDELRPVTMTRHWLDHAEGSVLVTFGRTRVLCAASFTEGVPRWRKGSGEGWVTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+   R  RE+V G+ GGR+ EI R+IGR+LR ++D+SALG   I +DCDV+QA
Sbjct: 68  EYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRSLRGIIDVSALGENTIALDCDVLQA 127

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCS--NKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           DGGTRTAAITGA+VAL D +    +           VL   ++AIS G++ G P +DL Y
Sbjct: 128 DGGTRTAAITGAYVALADAVTWGTERGLIKARSGKPVLSDSLSAISVGIIDGVPCLDLPY 187

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED     D N V T  G  +EVQG+AE A F +    ++L+LA      L  LQ+  ++
Sbjct: 188 EEDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFDRSELGSLLDLAATGNTRLAALQRRALA 247

Query: 240 N 240
            
Sbjct: 248 G 248


>gi|314982113|gb|EFT26206.1| ribonuclease PH [Propionibacterium acnes HL110PA3]
 gi|315090352|gb|EFT62328.1| ribonuclease PH [Propionibacterium acnes HL110PA4]
          Length = 254

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 108/237 (45%), Positives = 154/237 (64%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ +       AEGS LV FG T +L  A++ E VP W + +  GW+TA
Sbjct: 16  RIDGRRLDQLRDVRIECGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+ GGR+ EI R++GR+LR+VVD  ALG   II+DCDV+QA
Sbjct: 76  EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +        +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 193

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VM+ +G  VE+QG+AE   F+++    +L+LA    A L + Q + +
Sbjct: 194 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEAL 250


>gi|313895897|ref|ZP_07829451.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975322|gb|EFR40783.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 248

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 107/238 (44%), Positives = 155/238 (65%), Gaps = 9/238 (3%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R+ +Q+R + + R   +Y  GS L++ G T ++ +A++EE+VP +++ +  GW+TAEY M
Sbjct: 7   RRHDQLRPVRIERGYQRYPAGSALIEMGHTRVVCSASVEERVPFFLKGSGTGWVTAEYAM 66

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP +   R  REA+ GRQ GR+QEIQR+IGRALR+VVD  ALG R I IDCDV+QADGGT
Sbjct: 67  LPGAGTERTAREAMRGRQTGRTQEIQRLIGRALRAVVDTRALGERTIHIDCDVVQADGGT 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVL--KGHVAAISCGMLC-GYPIVDLDYGED 182
           RTA+ITGA+VAL      +E C+  +    V   + + AA+S G+     P++D+ Y ED
Sbjct: 127 RTASITGAFVAL------VEACATFYTKRGVFPVRDYTAAVSVGIGAENTPLLDICYEED 180

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +   VD N VMT +G  +EVQG+ E   FS+    A+L+L +  I +LI +QK  +  
Sbjct: 181 AQAMVDMNLVMTGAGSFIEVQGTGEGRAFSRAEMNALLDLGERGIRELIDVQKRALGE 238


>gi|108800808|ref|YP_641005.1| ribonuclease PH [Mycobacterium sp. MCS]
 gi|119869948|ref|YP_939900.1| ribonuclease PH [Mycobacterium sp. KMS]
 gi|126436406|ref|YP_001072097.1| ribonuclease PH [Mycobacterium sp. JLS]
 gi|123368907|sp|Q1B585|RNPH_MYCSS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228293|sp|A3Q379|RNPH_MYCSJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228294|sp|A1UJV2|RNPH_MYCSK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|108771227|gb|ABG09949.1| RNAse PH [Mycobacterium sp. MCS]
 gi|119696037|gb|ABL93110.1| RNAse PH [Mycobacterium sp. KMS]
 gi|126236206|gb|ABN99606.1| RNAse PH [Mycobacterium sp. JLS]
          Length = 260

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 106/212 (50%), Positives = 148/212 (69%), Gaps = 1/212 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  + +  GS LV+FG+T ++ TA++ E VP W + T  GW+TA
Sbjct: 4   REDGRLDDELRPVRITRGFTSHPAGSVLVEFGETRVMCTASVTEGVPRWRKGTGQGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R  RE+V GR GGR+QEI R+IGR+LR+ +DL+ALG   I IDCDV+QA
Sbjct: 64  EYAMLPAATHDRSDRESVKGRVGGRTQEISRLIGRSLRACIDLNALGENTIAIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVTYLA-AAEKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYSE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
           DS  +VD N V TD+G +VE+QG+ E ATF +
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPR 214


>gi|258651924|ref|YP_003201080.1| ribonuclease PH [Nakamurella multipartita DSM 44233]
 gi|258555149|gb|ACV78091.1| ribonuclease PH [Nakamurella multipartita DSM 44233]
          Length = 246

 Score =  205 bits (522), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 109/239 (45%), Positives = 157/239 (65%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R ++ TR   ++  GS LV+FG T +L  A++   VP W + +  GW+TA
Sbjct: 3   RADGRADHELRPVTFTRGFQQHPAGSVLVEFGGTKVLCAASVTTGVPRWRKGSGLGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V GR GGR+ EI R+IGR+LR+ +DL +LG   I +DCDV+QA
Sbjct: 63  EYAMLPSATHERSDRESVKGRVGGRTHEISRLIGRSLRACLDLRSLGENTIAVDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++ +   +    Q L   +AA+S G++ G   +DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAYLRE-RGQLADPQPLSCQIAAVSVGVVGGRVRLDLPYEE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D+  +VD N V TD G +VEVQG+AE AT+S+    AML+ A   IA L ++Q+  ++ 
Sbjct: 182 DARAEVDMNVVATDVGTLVEVQGTAEGATYSRSTLDAMLDSALAGIATLTEMQRAALAG 240


>gi|255522701|ref|ZP_05389938.1| ribonuclease PH [Listeria monocytogenes FSL J1-175]
          Length = 229

 Score =  205 bits (522), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 104/221 (47%), Positives = 151/221 (68%), Gaps = 3/221 (1%)

Query: 23  YAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGR 82
           + EGS L+  G+T ++ +A++E KVP ++R    GWI+AEY MLPR+T  R  RE+  G+
Sbjct: 4   HPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYSMLPRATNTRNIRESSKGK 63

Query: 83  QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQ 142
             GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQADGGTRTA+ITGA++A+   + 
Sbjct: 64  VTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGGTRTASITGAFIAMVMAIA 123

Query: 143 HMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVE 201
            +++     +    +K  +AA S G+L  G  ++DL+Y EDS   VD N +MT SG  VE
Sbjct: 124 KLDEAVPFAKFP--VKDFLAATSVGVLEEGGTVLDLNYVEDSAAQVDMNIIMTGSGAFVE 181

Query: 202 VQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           +QG+ E ATFS+     ++ L K  I++LI++QK+ + ++V
Sbjct: 182 LQGTGEEATFSETELAELIALGKKGISELIEIQKETLGDKV 222


>gi|296331615|ref|ZP_06874084.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675426|ref|YP_003867098.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151210|gb|EFG92090.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413670|gb|ADM38789.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 245

 Score =  205 bits (521), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 109/243 (44%), Positives = 157/243 (64%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GRQ +++R I+       + EGS L+  G+T ++  A++E++VP ++R    GWIT
Sbjct: 1   MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL  LG R I IDCDVIQ
Sbjct: 61  AEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLDY 179
           ADGGTRTA+ITGA++A+   +  +         +  +   +AAIS G+     I +DL+Y
Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLIKAGTI--KTNPITDFLAAISVGIDKEQGILLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS+ +VD N +MT SG  VE+QG+ E ATFS++    +L LA+  I +L+  QK+ + 
Sbjct: 179 EEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELVDKQKEELG 238

Query: 240 NEV 242
           + +
Sbjct: 239 DSL 241


>gi|326773720|ref|ZP_08233003.1| tRNA nucleotidyltransferase [Actinomyces viscosus C505]
 gi|326636950|gb|EGE37853.1| tRNA nucleotidyltransferase [Actinomyces viscosus C505]
          Length = 268

 Score =  205 bits (521), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 106/241 (43%), Positives = 146/241 (60%), Gaps = 2/241 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R +++TR    +AEGS LV FG T +L  A+  E VP W + +  GW+TA
Sbjct: 8   RKDGRAVDELRPVTMTRHWLDHAEGSVLVTFGRTRVLCAASFTEGVPRWRKGSGEGWVTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+   R  RE+V G+ GGR+ EI R+IGR+LR ++D++ALG   I +DCDV+QA
Sbjct: 68  EYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRSLRGIIDVAALGENTIALDCDVLQA 127

Query: 122 DGGTRTAAITGAWVALHDCLQ--HMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           DGGTRTAAITGA+VAL D +                VL   ++AIS G++ G P +DL Y
Sbjct: 128 DGGTRTAAITGAYVALTDAVAWGTQRGLIKARPGKPVLSDSLSAISVGIIDGVPCLDLPY 187

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED     D N V T  G  +EVQG+AE A F +     +L+LA    + L  LQ+  ++
Sbjct: 188 EEDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFDRSELGELLDLAATGNSRLAALQRQALA 247

Query: 240 N 240
            
Sbjct: 248 G 248


>gi|172039437|ref|YP_001805938.1| ribonuclease PH [Cyanothece sp. ATCC 51142]
 gi|254808585|sp|B1WUL8|RNPH_CYAA5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|171700891|gb|ACB53872.1| ribonuclease PH [Cyanothece sp. ATCC 51142]
          Length = 240

 Score =  205 bits (521), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 108/239 (45%), Positives = 156/239 (65%), Gaps = 6/239 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ NQ+R ++     ++++ GS L + G+T +L TA++EE VP ++  +  GW+TA
Sbjct: 5   RPDGRQPNQLRPVNFELNFTRFSAGSVLAQCGETKVLCTASIEEYVPRFLLGSGQGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE +  +  GR+QEIQR+IGR+LRS +DL  LG R I IDCDV+QA
Sbjct: 65  EYRMLPSATQERQRRELL--KLSGRTQEIQRLIGRSLRSCIDLQQLGERSITIDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYG 180
           D GTRT +ITG +VAL   L  +     K +L Q  L+  VAAIS G++ G   +DL+Y 
Sbjct: 123 DAGTRTTSITGGYVALALALNKL---IKKGELIQSPLRFPVAAISVGLIEGEAFLDLNYP 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D+D N VMT +  ++EVQG+AE  +F++     +L+LA+  I +L+ LQ   +S
Sbjct: 180 EDSKADIDFNVVMTGNLDLIEVQGTAEENSFTRSQLNDILDLAELGIKELVSLQNQALS 238


>gi|325068398|ref|ZP_08127071.1| ribonuclease PH [Actinomyces oris K20]
          Length = 268

 Score =  204 bits (520), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 106/242 (43%), Positives = 146/242 (60%), Gaps = 2/242 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R +++TR    +AEGS LV FG T +L  A+  E VP W + +  GW+TA
Sbjct: 8   RKDGRAVDELRPVTMTRHWLDHAEGSVLVTFGRTRVLCAASFTEGVPRWRKGSGEGWVTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+   R  RE+V G+ GGR+ EI R+IGR+LR ++D++ALG   I +DCDV+QA
Sbjct: 68  EYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRSLRGIIDVAALGENTIALDCDVLQA 127

Query: 122 DGGTRTAAITGAWVALHDCLQ--HMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           DGGTRTAAITGA+VAL D +                VL   ++AIS G++ G P +DL Y
Sbjct: 128 DGGTRTAAITGAYVALADAVAWGTQRGLIKARPGRPVLSDSLSAISVGIIDGVPCLDLPY 187

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED     D N V T  G  +EVQG+AE A F +     +L+LA    + L  LQ+  ++
Sbjct: 188 EEDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFDRSELGELLDLAATGNSRLAALQRQALA 247

Query: 240 NE 241
             
Sbjct: 248 GP 249


>gi|271963272|ref|YP_003337468.1| tRNA nucleotidyltransferase [Streptosporangium roseum DSM 43021]
 gi|270506447|gb|ACZ84725.1| tRNA nucleotidyltransferase [Streptosporangium roseum DSM 43021]
          Length = 238

 Score =  204 bits (520), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 111/238 (46%), Positives = 154/238 (64%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R +++TR    +AEGS LV+FG T +L  A++++ VP W R +  GW+TA
Sbjct: 3   RADGRSPDQLRPVTITRGWLAHAEGSVLVEFGGTKVLCAASVQDSVPRWRRGSGQGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+ VD   LG   I+IDCDV+QA
Sbjct: 63  EYAMLPRATNTRNDRESVRGKIGGRTHEISRLIGRSLRACVDYKTLGENSIVIDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  M +   K      L   V+A+S G++   P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWMRE--RKMCKGDPLIDSVSAVSVGVVGSTPLLDLCYTE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   + D N VMT SG  VEVQG+AE   F +     +L+L     A+L +LQ++ ++
Sbjct: 181 DVAAETDMNVVMTGSGAFVEVQGTAEGKPFDRGALDELLDLGVAGCAELTRLQRETLA 238


>gi|301168382|emb|CBW27972.1| putative ribonuclease [Bacteriovorax marinus SJ]
          Length = 234

 Score =  204 bits (519), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 107/234 (45%), Positives = 151/234 (64%), Gaps = 5/234 (2%)

Query: 7   QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
           + +Q R+I  T  ++ YA GS + +FG+T +  TAT+EE VP ++++   GWITAEY ML
Sbjct: 5   ERSQPRDIKFTAGINPYAAGSVIAEFGNTKVHITATVEESVPRFLKDKGQGWITAEYSML 64

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P ST  R +RE    +  GR+QEIQR+IGR+LR+++DL  LG R I IDCDV+ ADGGTR
Sbjct: 65  PSSTHTRNRRE--RSKVSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDCDVLVADGGTR 122

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTI 185
           T +I+GA+VAL   ++ +    +       +K  +AA+S G+   G  I DL+Y EDST 
Sbjct: 123 TTSISGAYVALEMAVEKL--LESGLIEETPIKEPLAALSVGINSAGKVIADLNYDEDSTC 180

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           + D N VMT SG  +EVQG+AE   FS+D   A+L  A + I  + K Q+ V+S
Sbjct: 181 ETDMNIVMTKSGKFIEVQGTAEGEAFSRDELNAILECATEAIQSVFKEQEKVLS 234


>gi|296122989|ref|YP_003630767.1| ribonuclease PH [Planctomyces limnophilus DSM 3776]
 gi|296015329|gb|ADG68568.1| ribonuclease PH [Planctomyces limnophilus DSM 3776]
          Length = 239

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 111/238 (46%), Positives = 153/238 (64%), Gaps = 7/238 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI---RNTKHG 57
           MR  GRQ +++R I + R+ +K A GS L+  GDT LL TA+++E +P W       + G
Sbjct: 1   MRHDGRQPDELRPIRIQRQFTKVAPGSVLISAGDTTLLVTASIDETLPPWKAADPAAQKG 60

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
           W+TAEY MLP ST  R +RE    +  GRS EIQR+IGR+LR+ VD   LG R I+ID +
Sbjct: 61  WLTAEYCMLPGSTSPRKRRE--REKVDGRSTEIQRLIGRSLRACVDFETLGPRTIMIDVE 118

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+QADGGTRT  ITG ++AL D +  + D  +K +   VL   +AA+S G+  G PI+DL
Sbjct: 119 VLQADGGTRTLGITGGYIALCDAIATLGDKVSKDR--PVLTTSIAAVSVGISHGTPILDL 176

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DY EDS  +VD N VMT SG  +E+QG+AE  +F++      L LA+  I  L++LQ+
Sbjct: 177 DYIEDSQAEVDLNVVMTGSGEFIEIQGTAEGRSFTRAQLDQQLALAEKGIRQLMELQQ 234


>gi|187734903|ref|YP_001877015.1| ribonuclease PH [Akkermansia muciniphila ATCC BAA-835]
 gi|187424955|gb|ACD04234.1| ribonuclease PH [Akkermansia muciniphila ATCC BAA-835]
          Length = 270

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 111/242 (45%), Positives = 151/242 (62%), Gaps = 4/242 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW--IRNTKHGWI 59
           R   R  +Q+R IS    ++  A  S LV FG T ++   T+EE VP W  ++  + GW+
Sbjct: 12  RQDKRLVDQLRPISFETGIAPNATASVLVTFGRTKVICAVTIEEDVPRWMKVQRVEGGWL 71

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           TAEY MLP ST +R +R+  +G+  GRS EIQR+IGR+LR+ VDL  +G R I +DCDV+
Sbjct: 72  TAEYSMLPYSTLDRKRRDITAGKLDGRSSEIQRLIGRSLRAAVDLGKIGQRTIWVDCDVL 131

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTRTA+ITGA VAL   +  +     K   S  +K  V+A+S G+L G  ++DL Y
Sbjct: 132 QADGGTRTASITGASVALAIAVNKLV-AEGKLAESP-MKRLVSAVSVGILEGEALLDLCY 189

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED   +VD N VMTD G  VEVQGS E A F+ D    ML L +  + ++ +LQ+ VI+
Sbjct: 190 VEDKDAEVDMNLVMTDQGEFVEVQGSGEEAVFTADQMNRMLELGRKGLEEIAELQRQVIA 249

Query: 240 NE 241
            E
Sbjct: 250 EE 251


>gi|113475741|ref|YP_721802.1| ribonuclease PH [Trichodesmium erythraeum IMS101]
 gi|110166789|gb|ABG51329.1| RNAse PH [Trichodesmium erythraeum IMS101]
          Length = 238

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 105/238 (44%), Positives = 153/238 (64%), Gaps = 4/238 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ NQ+R IS     +K+A  S L KFG+T +L   T++  VP ++ +T  GW+TA
Sbjct: 5   RPDGRKSNQLRPISFELDYTKFATSSVLTKFGETKVLCNVTIQPGVPKFLADTGQGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE +  +  GR+QEIQR+IGR+LR+ +D++ LG R II+D DV+QA
Sbjct: 65  EYRMLPAATSERQQREFM--KLSGRTQEIQRLIGRSLRAALDMNLLGERTIIVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRT +ITG +VA+ + +  + D   K + S +L   VAA+S G+L   P +DL+Y E
Sbjct: 123 DAGTRTVSITGGFVAVANAISKLID-QGKLERSPILH-QVAAVSVGLLEKEPYLDLNYPE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   ++D N VM D   ++EVQG+AE  +FS+     +L+LA+  I  L   Q+ VIS
Sbjct: 181 DVAAEIDFNVVMNDQPALIEVQGTAEIGSFSRTQLNQILDLAEAGIKKLFDAQRQVIS 238


>gi|15615630|ref|NP_243934.1| ribonuclease PH [Bacillus halodurans C-125]
 gi|21759418|sp|Q9K8D8|RNPH_BACHD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|10175690|dbj|BAB06787.1| ribonuclease PH [Bacillus halodurans C-125]
          Length = 257

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 107/239 (44%), Positives = 152/239 (63%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R+ +++R IS+      + EGS L+  G+T ++ TA+LE++VP ++R    GWIT
Sbjct: 1   MRMDERKADELRPISIEINYLHHPEGSVLISIGNTKVICTASLEDRVPPFLRGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALRS++DL  +G R + IDCDVIQ
Sbjct: 61  AEYSMLPRATEQRNMRESTRGKVSGRTMEIQRLIGRALRSIIDLDKIGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRT +ITGA+VAL   ++     +N       +   +AA+S G+      I+DL Y
Sbjct: 121 ADGGTRTTSITGAFVALSLAMEKA--LANGAIQEWPIDDFLAAVSVGIDPKLGAILDLCY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED+  +VD N VMT  G  VE+QG+ E ATFS +    +L LA   I  LI+ Q++ +
Sbjct: 179 AEDAQAEVDMNVVMTGKGEYVELQGTGEEATFSHNQLLTILALADKGIKQLIEEQRNAL 237


>gi|188586564|ref|YP_001918109.1| RNAse PH [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351251|gb|ACB85521.1| RNAse PH [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 246

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 103/234 (44%), Positives = 154/234 (65%), Gaps = 2/234 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R+ +++R + +     K+ EGS L+  GDT ++ +AT+E KVP +++    GW+TAEY M
Sbjct: 5   RKVDEIRPVKIETDFVKHPEGSVLITVGDTKVICSATIESKVPSFLKGEGKGWVTAEYSM 64

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LPR+T +R  REA  G+ GGR+QEIQR+IGR+LRS+V+L  LG R I +DCDVIQADGGT
Sbjct: 65  LPRATESRNIREAAKGKLGGRTQEIQRLIGRSLRSMVNLKKLGERTIWLDCDVIQADGGT 124

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTA+ITGA+V++   L  + +     +L   ++G++AAIS G++    ++DLD  ED   
Sbjct: 125 RTASITGAFVSMVLALNKLVEEKELSELP--VEGYLAAISVGIVNDEIMLDLDGKEDFQA 182

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D D N   TD G  VE+QG+ E   FS++    ML+ A+  +  L+++Q   +S
Sbjct: 183 DTDMNVAGTDKGEFVEIQGTGENHPFSKNEMEKMLSYAEKGMHALMEVQSQALS 236


>gi|33864812|ref|NP_896371.1| ribonuclease PH [Synechococcus sp. WH 8102]
 gi|61216015|sp|Q7U9I1|RNPH_SYNPX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|33632335|emb|CAE06791.1| ribonuclease PH [Synechococcus sp. WH 8102]
          Length = 249

 Score =  203 bits (517), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 105/239 (43%), Positives = 152/239 (63%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   ++R  S+      +A  S +V+ G T +L + +LEE VP W R    GW++A
Sbjct: 8   RADGRGATELRPFSVDWDPMSFALSSLIVRTGRTAVLCSVSLEEDVPRWRRGNGCGWLSA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP ST  R  RE +  +  GR+QEIQR+IGR+LR+V+D+ ALG R ++IDCDVIQA
Sbjct: 68  EYRLLPGSTPQRQSRELM--KLSGRTQEIQRLIGRSLRAVLDMDALGERTLLIDCDVIQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTA+ITGAW+AL      +   S        ++  +AA+S G++ G P++DLDY E
Sbjct: 126 DAGTRTASITGAWIALRRACDLLR--SQGVLTQDPIRQQLAAVSVGLIDGTPLLDLDYSE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  DVD N V    G ++E+QG+AE+A FS+    AMLNLA+  + +L++ Q+  ++ 
Sbjct: 184 DSRADVDLNVVTAGDGRLLELQGTAEQAPFSRSELDAMLNLAESGLQELMQGQRHALAT 242


>gi|320534625|ref|ZP_08035070.1| ribonuclease PH [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133145|gb|EFW25648.1| ribonuclease PH [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 268

 Score =  203 bits (517), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 108/245 (44%), Positives = 149/245 (60%), Gaps = 10/245 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R +++TR    +AEGS LV FG T +L  A+  E VP W + +  GW+TA
Sbjct: 8   RKDGRAVDELRPVTMTRHWLDHAEGSVLVSFGRTRVLCAASFTEGVPRWRKGSGEGWVTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+   R  RE+V G+ GGR+ EI R+IGR+LR ++D++ALG   I +DCDV+QA
Sbjct: 68  EYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRSLRGIIDVAALGENTIALDCDVLQA 127

Query: 122 DGGTRTAAITGAWVALHDCLQH------MEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
           DGGTRTAAITGA+VAL D +        ++    K  LS  L    +AIS G++ G P +
Sbjct: 128 DGGTRTAAITGAYVALADAVAWGTERGLIKARPGKPALSDSL----SAISVGIIDGVPCL 183

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DL Y ED     D N V T  G  +EVQG+AE A F +     +L+LA    + L  LQ+
Sbjct: 184 DLPYEEDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFDRSELGELLDLAAVGNSRLAALQR 243

Query: 236 DVISN 240
             ++ 
Sbjct: 244 QALAG 248


>gi|254409968|ref|ZP_05023748.1| ribonuclease PH [Microcoleus chthonoplastes PCC 7420]
 gi|196183004|gb|EDX77988.1| ribonuclease PH [Microcoleus chthonoplastes PCC 7420]
          Length = 238

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 103/238 (43%), Positives = 151/238 (63%), Gaps = 4/238 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   RQ NQ+R IS  R  +K+A  S L K GDT +L   T++  +P ++  T  GW+TA
Sbjct: 5   RPDHRQPNQLRPISFVRGFTKFAPASVLTKCGDTQVLCNVTIQPGIPRFLEGTGSGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE +  +  GR+QEIQR+IGR+LR+ VDL+ALG R + +D DV+QA
Sbjct: 65  EYRMLPGATPQRQTRELL--KLSGRTQEIQRLIGRSLRAAVDLTALGERTVFVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTA+ITG +VAL + L  +   + + + S + +  +AA+S G+L G P +DL Y E
Sbjct: 123 DAGTRTASITGGYVALAEALDKLVQ-AGELERSPI-RHQIAAVSVGLLAGEPFLDLKYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D     D N VM D  +I+E+QG+AE  +FS+     +++LA+  I +L+  Q+  +S
Sbjct: 181 DVAAQTDFNIVMNDELNIIEIQGTAEAESFSRTQLNQLIDLAETGIQELLDAQRHALS 238


>gi|300813206|ref|ZP_07093574.1| tRNA nucleotidyltransferase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300512659|gb|EFK39791.1| tRNA nucleotidyltransferase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 238

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/227 (45%), Positives = 143/227 (62%), Gaps = 2/227 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           RQ +++REI ++      A+GS L++ G+T ++ TA +EEKVP ++R  + GW++AEY M
Sbjct: 5   RQNSEIREIKISPDFVPNADGSVLIECGNTKVVCTAIIEEKVPPFLRGKEMGWVSAEYSM 64

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST  R  R+   G+Q GR  EIQR+IGR+LR  VDL ALG R I +DCDVI ADGGT
Sbjct: 65  LPGSTVIRKVRDISRGKQDGRGTEIQRLIGRSLREAVDLKALGERTIWLDCDVINADGGT 124

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RT +I G+++AL   +       NK      +K  V +IS G + G  +VDLDY EDS  
Sbjct: 125 RTTSINGSYIALEMAVNKA--LKNKKLEVNPIKCKVGSISVGKVKGIKLVDLDYKEDSNA 182

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           DVD N VM D   I+E+QG++ER TF+ +     L  A+  I D+ K
Sbjct: 183 DVDLNLVMNDKFEIIEIQGTSERDTFTTEELAEFLKFAQIGIKDIFK 229


>gi|47168526|pdb|1OYS|A Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
          Length = 245

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 108/243 (44%), Positives = 158/243 (65%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GRQ +++R I+       + EGS L+  G+T ++  A++E++VP ++R    GWIT
Sbjct: 1   MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP++T  +  +E+  G+  GR+ EIQR+IGRALR+VVDL  LG R I IDCDVIQ
Sbjct: 61  AEYSMLPQATNQQTIQESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLDY 179
           ADGGTRTA+ITGA++A+   +  +         +  +   +AAIS G+     I +DL+Y
Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLIKAGTI--KTNPITDFLAAISVGIDKEQGILLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS+ +VD N +MT SG  VE+QG+ E ATFS++    +L LA+  I +LI  QK+V+ 
Sbjct: 179 EEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLG 238

Query: 240 NEV 242
           + +
Sbjct: 239 DSL 241


>gi|293393625|ref|ZP_06637935.1| tRNA nucleotidyltransferase [Serratia odorifera DSM 4582]
 gi|291423960|gb|EFE97179.1| tRNA nucleotidyltransferase [Serratia odorifera DSM 4582]
          Length = 211

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 108/212 (50%), Positives = 146/212 (68%), Gaps = 2/212 (0%)

Query: 29  LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
           LV+FGDT +L TAT+E+ VP +++    GWITAEYGMLPRST +R  REA  G+QGGR+ 
Sbjct: 2   LVEFGDTKVLCTATVEDGVPRFLKGQGQGWITAEYGMLPRSTHSRNAREAAKGKQGGRTL 61

Query: 89  EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
           EIQR+I R+LR+ VDL  LG   I +DCDV+QADGGTRTA+ITGA VAL D L  +   +
Sbjct: 62  EIQRLIARSLRAAVDLKKLGEFTITLDCDVLQADGGTRTASITGACVALADALNALV-AA 120

Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
            K + +  +KG VAA+S G++ G  + DL+Y EDS  + D N VM + G ++EVQG+AE 
Sbjct: 121 GKLK-ANPMKGMVAAVSVGIVNGEALCDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEG 179

Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             FS D   A+L LA+  I  + + QK  +++
Sbjct: 180 EPFSHDELLALLALARGGIETIFQAQKAALAD 211


>gi|332295803|ref|YP_004437726.1| Ribonuclease PH [Thermodesulfobium narugense DSM 14796]
 gi|332178906|gb|AEE14595.1| Ribonuclease PH [Thermodesulfobium narugense DSM 14796]
          Length = 241

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 103/239 (43%), Positives = 157/239 (65%), Gaps = 3/239 (1%)

Query: 1   MRL-SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           MRL   R+ +++R I + +    Y EGS L+ FG+T ++  A++E+KVP +++ +  GWI
Sbjct: 1   MRLDKSRKNDELRHIEIIKDFLIYPEGSVLISFGNTKVICNASVEDKVPPFLKGSGSGWI 60

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           T+EY M+PR+T +R  RE+ SG+  GR+QEIQR+IGR+LRS VDLS LG R I ID +VI
Sbjct: 61  TSEYSMIPRATQDRNVRESTSGKISGRNQEIQRIIGRSLRSAVDLSLLGERTIYIDAEVI 120

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QAD GTR A+ITG +VAL   L+ +++       +  LK +VAA+S  +L    I+D ++
Sbjct: 121 QADAGTRCASITGGFVALVLALRKLKEYG--LIKTSPLKYYVAAVSVAVLNDEVILDPNF 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED   DVD N +  ++  I+E+QG+AE+  FS++    +L +A   I  +I +QK V+
Sbjct: 179 EEDVIADVDLNIIANENREIIEIQGTAEKKPFSKEKLNEILYIAYSGIEKIIAIQKKVL 237


>gi|319948537|ref|ZP_08022668.1| ribonuclease PH [Dietzia cinnamea P4]
 gi|319437784|gb|EFV92773.1| ribonuclease PH [Dietzia cinnamea P4]
          Length = 261

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 111/238 (46%), Positives = 159/238 (66%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R++++TR  + +  GS LV FG T ++ TA++ E VP W + +  GW+TA
Sbjct: 8   RADGRGVDELRDVTITRGFTSHPAGSVLVTFGQTRVMCTASVTEGVPRWRKGSGLGWLTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V G+ GGR+ EI R++GR+LR+ +DLSALG   I +DCDV+QA
Sbjct: 68  EYAMLPAATHERSGRESVRGKVGGRTHEISRLVGRSLRACIDLSALGENTIALDCDVLQA 127

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  ++  S+       L G VAA+S G++ G+ + DL Y E
Sbjct: 128 DGGTRTAAITGAYVALADAITWLQ--SSGAVTGNPLTGAVAAVSVGVVDGHVLCDLPYEE 185

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD G ++EVQG+AE A F +D   AML+ A+     L  LQ++ ++
Sbjct: 186 DSRAEVDMNVVCTDGGKLIEVQGTAEGAAFGRDVLDAMLDSAQAGCERLFALQREALA 243


>gi|219850495|ref|YP_002464928.1| ribonuclease PH [Chloroflexus aggregans DSM 9485]
 gi|219544754|gb|ACL26492.1| ribonuclease PH [Chloroflexus aggregans DSM 9485]
          Length = 250

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 108/225 (48%), Positives = 148/225 (65%), Gaps = 8/225 (3%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q+R I++    + YAEGS L+ +G+T +L TAT+E+ VP W+R  + GW+T
Sbjct: 2   VRRDGRAPDQLRPITIEIGAAPYAEGSALIAYGNTRVLCTATIEDGVPAWMRGQQGGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQG--GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           AEY MLPR+T  R +RE    R G  GR+QEIQR+IGRALR+ +DL A+G R I IDCDV
Sbjct: 62  AEYAMLPRATLQRSRRE----RNGPSGRTQEIQRLIGRALRAAIDLHAIGERTITIDCDV 117

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QADGGTRTA+I+G +VAL   + H+   S   +    L   +AA+S GM+    ++DL 
Sbjct: 118 LQADGGTRTASISGGYVALALAVDHLVR-SGAVETYPTLT-PLAAVSVGMIQDTLLLDLC 175

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           Y EDS  D+D N VM  +   VEVQ +AER   S+    A+L+LA
Sbjct: 176 YEEDSQADLDCNVVMNINSAFVEVQATAERTPVSRAQLDALLDLA 220


>gi|332655285|ref|ZP_08421025.1| tRNA nucleotidyltransferase [Ruminococcaceae bacterium D16]
 gi|332515790|gb|EGJ45400.1| tRNA nucleotidyltransferase [Ruminococcaceae bacterium D16]
          Length = 237

 Score =  202 bits (514), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 106/238 (44%), Positives = 155/238 (65%), Gaps = 5/238 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +++R I +   ++K+AEGSCL++ G+TH+L TA++E+K P  +   + GW+TA
Sbjct: 3   RIDGRKNDELRPIEIIPNINKFAEGSCLIRCGNTHVLCTASVEDKPPRHVPEGE-GWVTA 61

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+   R +R+    +  GRS EIQR+IGR+LRSVVD   LG   I IDCDV+Q 
Sbjct: 62  EYSMLPRANRERSRRDISKLKLNGRSAEIQRLIGRSLRSVVDRKKLGPWNITIDCDVLQG 121

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTA+ITG +VA+    Q M +   K QLS+  + G+VAA+S G++   P++DL Y 
Sbjct: 122 DGGTRTASITGGFVAMMLAFQKMME---KGQLSEYPISGYVAAVSAGVVNDVPMLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS+  VD N VM D G ++E+QG+ E   F+ +    ++ L    I +L   QK  +
Sbjct: 179 EDSSAMVDLNCVMDDQGRLIEIQGTGEGRPFTLEEQQKLVELCAKGIQELQAAQKKAL 236


>gi|282882977|ref|ZP_06291581.1| tRNA nucleotidyltransferase [Peptoniphilus lacrimalis 315-B]
 gi|281297184|gb|EFA89676.1| tRNA nucleotidyltransferase [Peptoniphilus lacrimalis 315-B]
          Length = 238

 Score =  202 bits (514), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 104/227 (45%), Positives = 143/227 (62%), Gaps = 2/227 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           RQ +++REI ++      A+GS L++ G+T ++ TA +EEKVP ++R  + GW++AEY M
Sbjct: 5   RQNSEIREIKISPDFVPNADGSVLIECGNTKVVCTAIIEEKVPPFLRGKEMGWVSAEYSM 64

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST  R  R+   G+Q GR  EIQR+IGR+LR  VDL ALG R I +DCDVI ADGGT
Sbjct: 65  LPGSTVIRKVRDISRGKQDGRGTEIQRLIGRSLREAVDLKALGERTIWLDCDVINADGGT 124

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RT +I G+++AL   +       NK      +K  V +IS G + G  +VDLDY EDS  
Sbjct: 125 RTTSINGSYLALEMAVNKA--LKNKRLEVNPIKCKVGSISVGKVKGIKLVDLDYKEDSNA 182

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           DVD N VM D   I+E+QG++ER TF+ +     L  A+  I D+ K
Sbjct: 183 DVDLNLVMNDKFEIIEIQGTSERDTFTAEELAEFLKFAQIGIKDIFK 229


>gi|169335158|ref|ZP_02862351.1| hypothetical protein ANASTE_01565 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257896|gb|EDS71862.1| hypothetical protein ANASTE_01565 [Anaerofustis stercorihominis DSM
           17244]
          Length = 241

 Score =  202 bits (514), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 105/238 (44%), Positives = 153/238 (64%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R+ ++ RE+ +TR  + Y +G  L++ G+T ++ +A +E +VP ++R    GWIT
Sbjct: 2   VRSDNRKFDEKREVKITRNYTMYPDGCVLIESGNTKVICSAFIENRVPPFLRGEGTGWIT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            EY MLP ST  R +R+    +  GRS EIQR+IGR+LRSVVDLS LG + I+IDCDVIQ
Sbjct: 62  CEYSMLPSSTQTRKQRDINRLKLDGRSSEIQRLIGRSLRSVVDLSILGEKTIMIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITGA+VAL+D L  M +     +L   L   +AAIS G++   P++DL Y 
Sbjct: 122 ADGGTRVASITGAFVALYDALSKMVEKGEIERLP--LTSFLAAISVGIVENEPLLDLCYI 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS    D N VM + G  +E+  + E+    ++    +L LAK  I +LI++QK+V+
Sbjct: 180 EDSNAIADMNVVMNEYGEFIELGMTGEKRPIKEEELNKLLILAKKGIKELIEIQKEVL 237


>gi|283780454|ref|YP_003371209.1| ribonuclease PH [Pirellula staleyi DSM 6068]
 gi|283438907|gb|ADB17349.1| ribonuclease PH [Pirellula staleyi DSM 6068]
          Length = 247

 Score =  202 bits (514), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 111/234 (47%), Positives = 154/234 (65%), Gaps = 6/234 (2%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  +++R I + R  +K + GS L++ G+T +L TA+++ KVP W+     GWITAEY M
Sbjct: 3   RTASELRPIKIKRNYTKMSPGSVLIEAGETVVLCTASVDAKVPDWLAGKGKGWITAEYNM 62

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST  R +RE    +  GR+ EIQR+IGR+LR+V+DL ALG R + +DCDV+QADGGT
Sbjct: 63  LPHSTRPRKQRE--RAKTDGRTTEIQRLIGRSLRAVIDLEALGERLLQVDCDVLQADGGT 120

Query: 126 RTAAITGAWVALHDCLQHME-DCSNKFQLS---QVLKGHVAAISCGMLCGYPIVDLDYGE 181
           RTA+ITGA++A+ D ++ ++ D +N   L     VL   VAAIS G++ G P +DL+Y +
Sbjct: 121 RTASITGAFIAVVDAIRSIKGDANNPKNLPITRPVLLDSVAAISVGIVEGKPTLDLEYVQ 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D   DVD N VMT SG  VE+QG+ E ATF      A+L LA+  I  L  +QK
Sbjct: 181 DVDADVDMNVVMTGSGKFVEIQGTGEEATFDDAQLAALLKLARQGITQLTTIQK 234


>gi|227833921|ref|YP_002835628.1| ribonuclease PH [Corynebacterium aurimucosum ATCC 700975]
 gi|262184924|ref|ZP_06044345.1| ribonuclease PH [Corynebacterium aurimucosum ATCC 700975]
 gi|227454937|gb|ACP33690.1| ribonuclease PH [Corynebacterium aurimucosum ATCC 700975]
          Length = 242

 Score =  202 bits (514), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 102/234 (43%), Positives = 152/234 (64%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R + +TR  +    GS LV+FG+T ++ TA++E  VP + +++  GW+TA
Sbjct: 6   RADGRALDQLRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEFGVPRFKKDSGEGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R+ RE++ G+  GR+ EI R++GR+LR+ VDLS LG   I +DCDV+QA
Sbjct: 66  EYAMLPSATHERMPRESMKGKVKGRTHEISRLVGRSLRAAVDLSELGENTIQLDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D + ++++        + L   +AA+S G++ G+  +DL Y E
Sbjct: 126 DGGTRTASITGAYVALADAIAYLKE--EGVVPGEPLLDPIAAVSVGIIDGHVCLDLPYEE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  +VD N VM + G  VE+QG+ E   F +     ML++A+   A LI  QK
Sbjct: 184 DSRAEVDLNVVMQEGGDFVEIQGTGEHGLFGRAELNDMLDVAQAGCAQLIDAQK 237


>gi|226226977|ref|YP_002761083.1| ribonuclease PH [Gemmatimonas aurantiaca T-27]
 gi|226090168|dbj|BAH38613.1| ribonuclease PH [Gemmatimonas aurantiaca T-27]
          Length = 247

 Score =  202 bits (514), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 112/239 (46%), Positives = 145/239 (60%), Gaps = 8/239 (3%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R    +R +SL R    YAEGSCL+ FG T +L  A++E  VP W + +  GW+TAEY M
Sbjct: 13  RSNEALRPVSLERGAVLYAEGSCLISFGKTRVLCAASVETGVPGWKKGSGEGWVTAEYAM 72

Query: 66  LPRSTGNRVKREAVSGRQ--GGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           LPR+T  R  RE    RQ  GGR+QEIQR+IGR++R+++D    G   I +DCDV+QADG
Sbjct: 73  LPRATRTRSSRE----RQQVGGRTQEIQRLIGRSVRAMLDDYRFGEFTIKVDCDVLQADG 128

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
           GTRTAAITGA VA+ D    M   S    ++  +K  VAAIS GM+ G   +DLDY ED 
Sbjct: 129 GTRTAAITGACVAVQDAFNWM--VSTGRIIASPVKRRVAAISVGMVDGEVRLDLDYEEDV 186

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
              VD N VM+  G  VEVQG+ E  TFS+     +L  A   I  L++ Q  V++  V
Sbjct: 187 RAGVDMNVVMSSEGRFVEVQGTGEHGTFSRQELDGLLGTAVAGIEQLLEAQTRVLAGPV 245


>gi|291005562|ref|ZP_06563535.1| ribonuclease PH [Saccharopolyspora erythraea NRRL 2338]
          Length = 237

 Score =  201 bits (512), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 103/224 (45%), Positives = 146/224 (65%), Gaps = 1/224 (0%)

Query: 16  LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           +TR    +  GS LV+FG T +L  A+++E VP W   +  GW+TAEY MLP ST  R  
Sbjct: 3   ITRGYQDWPAGSVLVEFGRTRVLCAASVQEGVPRWRAGSGLGWVTAEYAMLPSSTNTRSA 62

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE+V GR GGR+ EI R++GR+LR+ +DL+ALG   I +DCDVIQADGGTRTAAITGA+V
Sbjct: 63  RESVKGRIGGRTHEISRLVGRSLRACIDLAALGENTIALDCDVIQADGGTRTAAITGAYV 122

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
           AL D +  +   + +    + L   +AA+S G++ G   +DL Y EDS  +VD N V TD
Sbjct: 123 ALADAITWLS-AAGRLTDPKPLSCSIAAVSVGVVDGRVRLDLPYEEDSRAEVDMNVVATD 181

Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            G +VEVQG+ E ATF++     M++ A    ++L ++Q + ++
Sbjct: 182 HGTLVEVQGTGEGATFTRSTMDKMIDFALAGCSELSRIQSEALA 225


>gi|304440366|ref|ZP_07400255.1| ribonuclease PH/Ham1 protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371118|gb|EFM24735.1| ribonuclease PH/Ham1 protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 435

 Score =  201 bits (512), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 98/235 (41%), Positives = 152/235 (64%), Gaps = 2/235 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R+ N++R++ +T       +GSCLV+ G+T ++ TA +E+KVP +++    GW++AEY M
Sbjct: 4   REFNKIRDLKITPNYLSSPDGSCLVEMGNTKIIVTAMIEDKVPFFLKGQGVGWLSAEYSM 63

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P ST  R  R+   G+  GRSQEIQR+IGRALRS +DLS +G R I IDCDVI ADGGT
Sbjct: 64  IPGSTQRRKPRDISRGKIDGRSQEIQRLIGRALRSAIDLSLIGERTIWIDCDVISADGGT 123

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RT ++TG +VAL   +        K   +  +K  VAAIS G + G  +VDLD+ +DS  
Sbjct: 124 RTLSVTGGFVALKLAVNKY--LKEKLIFANPIKRKVAAISLGKVYGRLMVDLDFNDDSKA 181

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DVD N VM +  +I+E+QG++E++         ++ L+++ I +++K+ +D + +
Sbjct: 182 DVDMNIVMDEDHNIIEIQGTSEKSPLKIKELEELVKLSEETIDEIMKIVEDTVPS 236


>gi|168702929|ref|ZP_02735206.1| RNase PH [Gemmata obscuriglobus UQM 2246]
          Length = 243

 Score =  201 bits (512), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 110/234 (47%), Positives = 151/234 (64%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R + R    +RE+S TR  ++ A GS LVK G T +L T  +E KVP ++     GW+TA
Sbjct: 3   RPNDRSPTALRELSFTRGYTRPAPGSVLVKMGRTTVLCTCCVEPKVPDFLVGKGKGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLP ST  R  R+  +G+  GRS EIQR+IGR+LR+VV+L  LG R + IDCDV++A
Sbjct: 63  EYGMLPGSTHTRKPRDK-AGKVDGRSVEIQRLIGRSLRAVVNLDKLGERTLWIDCDVLEA 121

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA  D +  ++       +++VL   VAA+S G++ G   +DL+Y E
Sbjct: 122 DGGTRTASITGAFVAAVDAINSIKSLLT-VPVTEVLTDSVAAVSVGLIEGEERLDLEYVE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D   DVD N VMT SG I+EVQGS E ATF++     +++L +  I  +   QK
Sbjct: 181 DRDADVDMNLVMTGSGKIIEVQGSGEEATFTRKQLDRLVDLGEAGIQAITLAQK 234


>gi|118619118|ref|YP_907450.1| ribonuclease PH [Mycobacterium ulcerans Agy99]
 gi|166228296|sp|A0PUG0|RNPH_MYCUA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|118571228|gb|ABL05979.1| ribonuclease RphA [Mycobacterium ulcerans Agy99]
          Length = 259

 Score =  201 bits (512), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 107/238 (44%), Positives = 156/238 (65%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+++++R + +TR  ++   GS L++FG T ++ TA++ E V  W + +  GW+TA
Sbjct: 4   REDGRRDDELRPVVITRGFTENPAGSVLIEFGRTKVMCTASVTEGVSRWRKGSGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V GR GGR+QEI R++GR+LR+ +DL+ALG   I +DCDV+QA
Sbjct: 64  EYAMLPSATHTRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAVDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVNYLA-AAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VEVQG+ E ATF +     +L++A      L   Q D ++
Sbjct: 183 DSRAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDMALGACDTLFAAQCDALA 240


>gi|205374390|ref|ZP_03227188.1| ribonuclease PH [Bacillus coahuilensis m4-4]
          Length = 247

 Score =  201 bits (511), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 108/241 (44%), Positives = 156/241 (64%), Gaps = 7/241 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +++R +++      + EGS L+  G T ++ TA++EE+VP ++R    GW+ 
Sbjct: 1   MRRNERKVDELRPVTIETDYLIHPEGSVLISIGQTKVICTASVEERVPPFMRGEGKGWVN 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+I R+LR+VVDL+ALG R I IDCDVIQ
Sbjct: 61  AEYSMLPRATEKRTIRESSKGKVTGRTMEIQRLISRSLRAVVDLTALGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDL 177
           ADGGTRTA+ITGA++A+   +  +  E    +F ++  L    +AIS G+      I+DL
Sbjct: 121 ADGGTRTASITGAFIAMTIAIDKISKEKKLPRFPVNDFL----SAISVGIDREKTVILDL 176

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            Y EDST  VD N VMT SG  VEVQG+ E ATF+      +L++A+    +L+K QK+ 
Sbjct: 177 SYDEDSTARVDMNVVMTGSGEFVEVQGTGEEATFTMSELQQLLSVAEKGNRELMKFQKEA 236

Query: 238 I 238
           +
Sbjct: 237 L 237


>gi|158335996|ref|YP_001517170.1| ribonuclease PH [Acaryochloris marina MBIC11017]
 gi|189043752|sp|B0CAB9|RNPH_ACAM1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|158306237|gb|ABW27854.1| ribonuclease PH [Acaryochloris marina MBIC11017]
          Length = 239

 Score =  201 bits (510), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 104/240 (43%), Positives = 154/240 (64%), Gaps = 6/240 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ +Q+R I   R  + +A GS L + G T +L T +++  VP ++ +T  GW+TA
Sbjct: 5   RPDGRQPDQLRPIRFHREYTHFAAGSVLAECGQTKVLCTVSVQPGVPRFLEDTGQGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R +RE +  +  GR+QEIQR+IGR+LR+ +DL ALG R +++D DV+QA
Sbjct: 65  EYRMLPGSTPERQRRELM--KLSGRTQEIQRLIGRSLRAALDLQALGERTLVVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYG 180
           D GTRT +ITG +VAL D +  +    +K ++ Q  ++ HVAA+S G+L G P +DL+Y 
Sbjct: 123 DAGTRTTSITGGFVALVDAVNQL---VSKGEIPQSPIRHHVAAVSVGLLEGQPFLDLNYP 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED    VD N V T+   ++EVQG+AE  T  +     ML+LA+  I  LI+ Q+  +++
Sbjct: 180 EDVGAAVDLNVVATEQLELLEVQGTAEEGTLPRPQLNQMLDLAEIGIQQLIEAQRQALAS 239


>gi|289672870|ref|ZP_06493760.1| ribonuclease PH [Pseudomonas syringae pv. syringae FF5]
          Length = 186

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 98/182 (53%), Positives = 132/182 (72%), Gaps = 1/182 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L+ ++      +    LK  +AA+S GM  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALADALKVIKK-RGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181

Query: 182 DS 183
           DS
Sbjct: 182 DS 183


>gi|254819170|ref|ZP_05224171.1| ribonuclease PH [Mycobacterium intracellulare ATCC 13950]
          Length = 259

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 106/240 (44%), Positives = 156/240 (65%), Gaps = 1/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  + +  GS L++FG T ++ TA++ E VP W + +  GW+TA
Sbjct: 4   REDGRLDDELRPVVITRGFTDHPAGSVLIEFGHTKVMCTASVTEGVPRWRKGSGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V GR  GR+QEI R+IGR+LR+ +DL+ALG   I +DCDV+QA
Sbjct: 64  EYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAFVALADAVTYL-GAAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D+  +VD N V TD+G +VEVQG+ E ATF +     +L++A      L   Q++ ++  
Sbjct: 183 DARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDVALAACDKLFAAQREALAQP 242


>gi|241190345|ref|YP_002967739.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195751|ref|YP_002969306.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|240248737|gb|ACS45677.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250305|gb|ACS47244.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793332|gb|ADG32867.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis V9]
          Length = 230

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 100/210 (47%), Positives = 137/210 (65%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
           + +TR  +   EGS L++ G+T ++ TAT  + VP W +++  GW+TAEY MLPR+T  R
Sbjct: 1   MRITRAFTDVPEGSVLIECGNTRVMCTATFTDTVPRWRKDSGLGWVTAEYSMLPRATAQR 60

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
             RE+V G+ GGR+ EI R+IGR LR V+D+ ALG   I +DCDV+QADGGTRTA+ITGA
Sbjct: 61  TDRESVRGKVGGRTHEISRLIGRCLRGVIDMKALGENTIQMDCDVLQADGGTRTASITGA 120

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
            VAL D L   +       +  VL   V+A+S G++ G P++DL Y EDS    D N  M
Sbjct: 121 HVALVDALNWAKQNGKIKSVKNVLLDSVSAVSVGVIDGEPMLDLPYVEDSRAMTDMNVAM 180

Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           T SG  VE+QG+AE   FS++    +L+LA
Sbjct: 181 TGSGKFVEIQGTAEHRPFSRNELGVLLDLA 210


>gi|327542216|gb|EGF28707.1| ribonuclease PH [Rhodopirellula baltica WH47]
          Length = 246

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 108/235 (45%), Positives = 145/235 (61%), Gaps = 4/235 (1%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
           S R  +Q+R + +     +    S L K G T +L TA++E  VP W+     GW+TAEY
Sbjct: 7   SARPHDQIRPVEIECGYLESNPASVLYKSGKTIVLCTASVETNVPPWMEGRGKGWVTAEY 66

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
            MLP ST  R KR   SG+  GR+ EIQR+IGR+LR+++DL ALG R I +DCDV+QADG
Sbjct: 67  NMLPGSTSPR-KRRDRSGKVDGRTTEIQRLIGRSLRAIIDLHALGERSITVDCDVLQADG 125

Query: 124 GTRTAAITGAWVALH---DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           GTRTA+ITG ++AL      L  + + +     + VL+  VAAIS G++    ++DLDY 
Sbjct: 126 GTRTASITGGYIALSLAVSQLASIPELAPPIDPTAVLRDSVAAISVGVIGEDVVLDLDYR 185

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            DS  DVD N +MT SG  +E+QG+ E ATF       +L L K  IA+L KLQK
Sbjct: 186 LDSAADVDMNVIMTGSGRFIELQGTGEEATFDDVQLAELLRLGKIGIAELTKLQK 240


>gi|332711140|ref|ZP_08431074.1| RNAse PH [Lyngbya majuscula 3L]
 gi|332350122|gb|EGJ29728.1| RNAse PH [Lyngbya majuscula 3L]
          Length = 234

 Score =  200 bits (508), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 103/234 (44%), Positives = 153/234 (65%), Gaps = 4/234 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   RQ +Q+R I   R  ++YA GS L   G+T +L T T++E+VP ++++T  GW+TA
Sbjct: 5   RPDNRQPDQLRPILFEREFTRYAPGSVLAHCGETKVLCTVTVQEEVPRFLKDTGSGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE +  +  GR+QEIQR+IGR+LR+ VDL ALG R + +D DVIQA
Sbjct: 65  EYRMLPGATPERQRRELL--KLSGRTQEIQRLIGRSLRAAVDLKALGERTLTVDADVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRT +ITG +VAL D +  +   +   + S ++   VAA+S G+L G P +DL+Y E
Sbjct: 123 DAGTRTTSITGGYVALVDAVDKLVK-TGVLERSPLIH-QVAAVSVGLLEGEPFLDLNYIE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D   +VD N VM D   I+EVQG+AE   +++     +++LA+  I +L++ Q+
Sbjct: 181 DVAAEVDFNVVMNDEMGIIEVQGTAESGAYTRHQLNQLIDLAEKGIKELLEAQR 234


>gi|32473863|ref|NP_866857.1| ribonuclease PH [Rhodopirellula baltica SH 1]
 gi|61216016|sp|Q7URE2|RNPH_RHOBA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|32444399|emb|CAD74398.1| ribonuclease PH [Rhodopirellula baltica SH 1]
          Length = 246

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 109/235 (46%), Positives = 144/235 (61%), Gaps = 4/235 (1%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
           S R  +Q+R + +     +    S L K G T +L TA++E  VP W+     GW+TAEY
Sbjct: 7   SARPHDQIRPVEIECGYLESNPASVLYKSGKTIVLCTASVETNVPPWMEGRGKGWVTAEY 66

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
            MLP ST  R KR   SG+  GR+ EIQR+IGR+LR++VDL ALG R I +DCDV+QADG
Sbjct: 67  NMLPGSTSPR-KRRDRSGKVDGRTTEIQRLIGRSLRAIVDLHALGERSITVDCDVLQADG 125

Query: 124 GTRTAAITGAWVALH---DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           GTRTA+ITG ++AL      L  + +       + VL+  VAAIS G++    ++DLDY 
Sbjct: 126 GTRTASITGGYIALSLAVSQLAAIPELDPPVDPTAVLRDSVAAISVGVIGEDVVLDLDYR 185

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            DS  DVD N +MT SG  +E+QG+ E ATF       +L L K  IA+L KLQK
Sbjct: 186 LDSAADVDMNVIMTGSGRFIELQGTGEEATFDDVQLAELLRLGKIGIAELTKLQK 240


>gi|33864097|ref|NP_895657.1| ribonuclease PH [Prochlorococcus marinus str. MIT 9313]
 gi|61216018|sp|Q7V4V8|RNPH_PROMM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|33635681|emb|CAE22005.1| ribonuclease PH [Prochlorococcus marinus str. MIT 9313]
          Length = 244

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 106/241 (43%), Positives = 152/241 (63%), Gaps = 6/241 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  + MR + +T     +A  S +++ G T +L +  +EE VP W +    GW++A
Sbjct: 8   RADGRLADVMRPLQITWDPMGFALSSLIIRTGRTSVLCSVCVEEGVPRWRKGQGKGWLSA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP ST  R  RE +  +  GR+QEIQR+IGR+LR+V+D++ALG   + IDCDVIQA
Sbjct: 68  EYRLLPGSTPQRQNRELL--KLSGRTQEIQRLIGRSLRAVIDMAALGETTLRIDCDVIQA 125

Query: 122 DGGTRTAAITGAWVAL-HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           D GTRTA+ITGAW+AL   C + +E         Q +   VAA+S G++  YP++DLDY 
Sbjct: 126 DAGTRTASITGAWIALKRGCDRLLE---QGLLTHQPVIEQVAAVSVGLVESYPLLDLDYS 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  DVD N VM  +GH++E+QG+AE A FS++    +LNLA+  +  L   Q+  +  
Sbjct: 183 EDSRADVDLNVVMGSNGHLLELQGTAEGAPFSRNQLNDLLNLAEPGLQHLQAFQRSALMQ 242

Query: 241 E 241
           E
Sbjct: 243 E 243


>gi|56750485|ref|YP_171186.1| ribonuclease PH [Synechococcus elongatus PCC 6301]
 gi|81299882|ref|YP_400090.1| ribonuclease PH [Synechococcus elongatus PCC 7942]
 gi|61215786|sp|Q5N4V3|RNPH_SYNP6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123557014|sp|Q31PB6|RNPH_SYNE7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|56685444|dbj|BAD78666.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81168763|gb|ABB57103.1| RNAse PH [Synechococcus elongatus PCC 7942]
          Length = 238

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 102/242 (42%), Positives = 148/242 (61%), Gaps = 12/242 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +Q+R I+  RR +++  GS L +FG T +L T T++  VP W+     GW+T
Sbjct: 4   IRPDGRRPDQLRAIAFQRRFTQFPAGSVLAQFGQTQVLCTVTIQAGVPRWLTGQGQGWLT 63

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP +T +R  RE +  +  GR+QEIQR+IGR+LR+ +DL  LG R ++ID DV+Q
Sbjct: 64  AEYRMLPGATPDRQSREWL--KLSGRTQEIQRLIGRSLRAAIDLKKLGERTLLIDADVLQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHM----EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           AD GTRT AI G+WVAL D +  +    E   +  Q S      +AA+S  ++ G   +D
Sbjct: 122 ADAGTRTTAINGSWVALQDAIAQLIAQGELTESPIQRS------IAAVSVALIGGEAFLD 175

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            DY ED   DVD N VM D G ++E+QG+AE   FS+     +L+LA+  IA +   Q +
Sbjct: 176 PDYPEDVQADVDCNVVMGDRGELIEIQGTAEANPFSRTQLNHILDLAEQGIAQIQAAQLE 235

Query: 237 VI 238
            +
Sbjct: 236 AL 237


>gi|261415038|ref|YP_003248721.1| ribonuclease PH [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261371494|gb|ACX74239.1| ribonuclease PH [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326761|gb|ADL25962.1| tRNA nucleotidyltransferase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 241

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 105/239 (43%), Positives = 154/239 (64%), Gaps = 8/239 (3%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R+  + R + +T      A+GS L++ G T ++  ATL  KVP W+     GWITAEY +
Sbjct: 8   RKPEEFRNLKMTTGFISSADGSVLIEMGRTRVICNATLLPKVPDWLAGRGTGWITAEYSL 67

Query: 66  LPRSTGNRVKREAVSGRQG--GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           LP+STG RV+RE    R+G  GR+QEIQR++GR+LR   DL+ALG   I++DCDVI+ADG
Sbjct: 68  LPQSTGKRVERE----RKGASGRTQEIQRLVGRSLRGAADLAALGENAIVVDCDVIEADG 123

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
           GTRTA+I G +VAL   ++ +++     Q  Q+LK  + AIS G++ G P+ DL Y EDS
Sbjct: 124 GTRTASIIGGFVALAIAVKKIKERLGITQ--QILKHGITAISVGVVDGNPLCDLCYVEDS 181

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
             DVD N VM D+ + +EVQG+ E A+F +     +L+L ++   ++ K Q ++I  E+
Sbjct: 182 AADVDMNVVMQDAKNFIEVQGTGEHASFDRAMLNTLLDLGENACKEIYKKQMELIGGEL 240


>gi|220910436|ref|YP_002485747.1| ribonuclease PH [Cyanothece sp. PCC 7425]
 gi|254808586|sp|B8HPC6|RNPH_CYAP4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|219867047|gb|ACL47386.1| ribonuclease PH [Cyanothece sp. PCC 7425]
          Length = 239

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 104/237 (43%), Positives = 152/237 (64%), Gaps = 4/237 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ +Q+R IS  R  +++A GS L + G T +L   T+   VP ++     GW+TA
Sbjct: 5   RPDGRQSHQLRPISFERGFTRFAAGSVLTRCGQTQVLCNVTVRPGVPKFLEGRGQGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE +  +  GR+QEIQR+IGR+LR+ +D   LG R +++D DV+QA
Sbjct: 65  EYRMLPAATPQRQEREML--KLSGRTQEIQRLIGRSLRAALDFDLLGERTLVVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRT AITG++VAL D +  +   + + Q S + + +VAA+S G+L G P +DL Y E
Sbjct: 123 DAGTRTTAITGSFVALADAIDQLLQ-AGELQRSPI-RNYVAAVSVGLLEGEPFLDLSYQE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D    VD N VMT+S  I+E+QG+AE  +FS+     +L++A+  I +LI  QK V+
Sbjct: 181 DVAASVDFNVVMTESLQILELQGTAEGESFSRTQLNQILDVAEVGIRELIAAQKSVL 237


>gi|221632459|ref|YP_002521680.1| ribonuclease PH [Thermomicrobium roseum DSM 5159]
 gi|221156234|gb|ACM05361.1| ribonuclease PH [Thermomicrobium roseum DSM 5159]
          Length = 243

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 111/231 (48%), Positives = 154/231 (66%), Gaps = 4/231 (1%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
           GR  +++R + +      YAEGS L+  G+TH+L  AT+EE+VP ++  +  GWITAEYG
Sbjct: 11  GRANDELRPVEIVPHYIPYAEGSALIMLGNTHVLCAATVEERVPSFLVGSGQGWITAEYG 70

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           MLPRS   R+ RE +    GGR+ EIQR+IGR+LR+ VDL+ALG R IIIDCDV++ADGG
Sbjct: 71  MLPRSGRERIPRERMG--PGGRTAEIQRLIGRSLRAAVDLAALGERTIIIDCDVLRADGG 128

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
           TRTAAITG WVA             + +   V++  VAA+S G++ G P +DL+Y EDS 
Sbjct: 129 TRTAAITGGWVA-LHLALQHLLAEGRIESLPVVR-QVAAVSVGVVAGQPRLDLEYAEDSC 186

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            +VD N VMTD G  VE+QG+AE   F ++    +L LA+  I++L+ +Q+
Sbjct: 187 AEVDMNIVMTDRGEFVELQGTAEGQPFGREVLEQLLRLAERGISELMLVQR 237


>gi|154500957|ref|ZP_02038995.1| hypothetical protein BACCAP_04643 [Bacteroides capillosus ATCC
           29799]
 gi|150269981|gb|EDM97500.1| hypothetical protein BACCAP_04643 [Bacteroides capillosus ATCC
           29799]
          Length = 238

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 104/237 (43%), Positives = 154/237 (64%), Gaps = 3/237 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R I +   ++K+AEGSCL++ G+TH+L TA++E++VP  +   + GW+TA
Sbjct: 3   RIDGRANDQLRPIEIIPGINKFAEGSCLIRCGNTHVLCTASVEDRVPPHVPEGE-GWVTA 61

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+   R KR+    +   RS EIQR++GR+LR+ VD+ ALG R I +DCDV+Q 
Sbjct: 62  EYSMLPRANRERSKRDIAKLKLSARSAEIQRLVGRSLRAAVDMKALGPRTITVDCDVLQG 121

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA++TG +VAL   L  + +       +  LK  VAAIS G++    ++DL Y E
Sbjct: 122 DGGTRTASVTGGFVALSFALHKLVE--EGVLEAMPLKTCVAAISAGIVDDQLLLDLCYEE 179

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS+  VD N VMT  G +VE+QG+ E  +F+ +   A++ L    I D+  +QK V+
Sbjct: 180 DSSAQVDLNCVMTGEGELVELQGTGEGRSFTLEEQRALVELCAKGIRDVQAVQKAVL 236


>gi|78185641|ref|YP_378075.1| ribonuclease PH [Synechococcus sp. CC9902]
 gi|78169935|gb|ABB27032.1| RNAse PH [Synechococcus sp. CC9902]
          Length = 243

 Score =  198 bits (503), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 106/240 (44%), Positives = 150/240 (62%), Gaps = 4/240 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  N +R  S+T     +A  S  V+ G T +L +  L++ VP W R    GW++A
Sbjct: 8   RADGRCRNALRPFSVTWDPMGFALSSVTVRTGRTTVLCSVCLDDNVPRWRRGEGLGWLSA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP ST  R  RE +  +  GR+QEIQR+IGR+LR+ VD++ LG R ++IDCDVIQA
Sbjct: 68  EYRLLPGSTPQRQGRELM--KLSGRTQEIQRLIGRSLRAAVDMAQLGERTLLIDCDVIQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTAAITGAW+ALH     +   S     +  L+  VAA+S G++    ++DLDY E
Sbjct: 126 DAGTRTAAITGAWLALHRACSRL--VSQGILENSPLQSQVAAVSVGLVDSQALLDLDYSE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  +VD N V  D G ++EVQG+AE A FS+    A+L+LA+  +  L++ Q+  + +E
Sbjct: 184 DSRAEVDLNVVQADDGRLLEVQGTAEGAPFSRAQLDALLDLAEPGLRQLMEAQRQALVSE 243


>gi|269128062|ref|YP_003301432.1| ribonuclease PH [Thermomonospora curvata DSM 43183]
 gi|268313020|gb|ACY99394.1| ribonuclease PH [Thermomonospora curvata DSM 43183]
          Length = 239

 Score =  198 bits (503), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 106/249 (42%), Positives = 151/249 (60%), Gaps = 24/249 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R  +Q+R + + R    +AEGS L++FG T +L  A++++ VP W R++  GW+TA
Sbjct: 3   RPDDRAPDQLRPVRIQRNWLDHAEGSVLIEFGATRVLCAASVQDSVPRWRRDSGLGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R +RE+V GR GGR+QEI R+IGR+LR+ VD   LG   +++DCDV+QA
Sbjct: 63  EYAMLPRATHTRGERESVKGRLGGRTQEISRLIGRSLRACVDFKELGENTVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----------- 170
           DGGTRTAAITGA+VAL D +  M +        +++KG        ++C           
Sbjct: 123 DGGTRTAAITGAYVALADAVAWMRE-------RELIKGDP------LICSVAAVSVGVVD 169

Query: 171 GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           G P +DL Y ED     D N V T  G  VEVQG+AE   F +    A+L+LA    A+L
Sbjct: 170 GEPRLDLCYAEDVEAGTDMNVVCTGDGKFVEVQGTAEGQPFDRAELDALLDLAAGGCAEL 229

Query: 231 IKLQKDVIS 239
            +LQ++ ++
Sbjct: 230 TRLQQEALN 238


>gi|116072072|ref|ZP_01469340.1| Ribonuclease PH [Synechococcus sp. BL107]
 gi|116065695|gb|EAU71453.1| Ribonuclease PH [Synechococcus sp. BL107]
          Length = 243

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/240 (43%), Positives = 151/240 (62%), Gaps = 4/240 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  N +R  S+T     +A  S  V+ G T +L +  L++ VP W R    GW++A
Sbjct: 8   RADGRCRNDLRPFSVTWDPMGFALSSVTVRTGRTTVLCSVCLDDNVPRWRRGEGLGWLSA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP ST  R  RE +  +  GR+QEIQR+IGR+LR+ VD++ LG R ++IDCDVI+A
Sbjct: 68  EYRLLPGSTPQRQGRELM--KLSGRTQEIQRLIGRSLRAAVDMAKLGERTLLIDCDVIEA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTAAITGAW+AL      +   S     S  L+  VAA+S G++ G  ++DLDY E
Sbjct: 126 DAGTRTAAITGAWLALQRACSRL--VSQGILESSPLQSQVAAVSVGLVDGQALLDLDYSE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  +VD N V  D G ++EVQG+AE A FS+     +L+LA+  +  L++ Q++ ++++
Sbjct: 184 DSRAEVDLNVVQADDGRLLEVQGTAEGAPFSRAQLDELLDLAEPGLKQLMQAQREALASD 243


>gi|119512637|ref|ZP_01631712.1| Ribonuclease PH [Nodularia spumigena CCY9414]
 gi|119462708|gb|EAW43670.1| Ribonuclease PH [Nodularia spumigena CCY9414]
          Length = 247

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 106/239 (44%), Positives = 149/239 (62%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ  ++R IS     +++A GS L KFGDT +L T ++ E VP ++  T  GW+T+
Sbjct: 5   RPDGRQPYELRPISFHAGFTRFAPGSVLTKFGDTQILCTVSVSEGVPKFLAGTGKGWLTS 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R  RE +  +  GR+QEIQR+IGR+LR+ +D  ALG R + +D DV+QA
Sbjct: 65  EYRMLPSSTQERQPRELL--KLSGRTQEIQRLIGRSLRAAIDFEALGERTLTVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTAAITG +VAL   +  +   S   + S  L G VAAIS G+L G P +DL+Y E
Sbjct: 123 DAGTRTAAITGGFVALAHAVGQLLH-SGVLERSP-LCGQVAAISVGLLQGEPYLDLNYIE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D    VD N VM  +  I+E+QG+AE  ++S+     +L+ A+  I  L+  Q++ I+ 
Sbjct: 181 DVGAAVDFNVVMNQNLGIIEIQGTAEEGSYSRTQLNQLLDFAEKGIQQLLIAQREAIAG 239


>gi|124024144|ref|YP_001018451.1| ribonuclease PH [Prochlorococcus marinus str. MIT 9303]
 gi|123964430|gb|ABM79186.1| ribonuclease PH [Prochlorococcus marinus str. MIT 9303]
          Length = 244

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 106/241 (43%), Positives = 151/241 (62%), Gaps = 6/241 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  + MR + +T     +A  S +++ G T +L +  +EE VP W +    GW++A
Sbjct: 8   RADGRLADVMRPLQVTWDPMGFALSSLIIRTGRTAVLCSVCVEEGVPRWRQGQGKGWLSA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP ST  R  RE +  +  GR+QEIQR+IGR+LR+V+D++AL    + IDCDVIQA
Sbjct: 68  EYRLLPGSTPQRQNRELL--KLSGRTQEIQRLIGRSLRAVIDMAALRETTLRIDCDVIQA 125

Query: 122 DGGTRTAAITGAWVAL-HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           D GTRTAAITGAW+AL   C + +E         Q +   VAA+S G++  YP++DLDY 
Sbjct: 126 DAGTRTAAITGAWIALKRGCDRLLE---QGLLTHQPVIDQVAAVSVGLVDSYPLLDLDYS 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  DVD N VM  +GH++E+QG+AE A FS++    +LNLA+  +  L   Q+  +  
Sbjct: 183 EDSRADVDLNVVMGSNGHLLELQGTAEGAPFSRNQLNDLLNLAEPGLQHLQTFQRSALMQ 242

Query: 241 E 241
           E
Sbjct: 243 E 243


>gi|281356100|ref|ZP_06242593.1| ribonuclease PH [Victivallis vadensis ATCC BAA-548]
 gi|281317469|gb|EFB01490.1| ribonuclease PH [Victivallis vadensis ATCC BAA-548]
          Length = 247

 Score =  196 bits (498), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 103/239 (43%), Positives = 149/239 (62%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK--HGWI 59
           R+ GR  +++R+I +T     +   S L++ G T ++   +++ KVP W++N K   GWI
Sbjct: 3   RIDGRAPDELRKIVITPDYLSHPLASVLIRNGGTRVVCAVSIDAKVPAWMKNRKVPGGWI 62

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           T EYGMLP ST +R+KRE+ +G+QGGR+ EIQR+IGR+LR   DL  LG     +DCDVI
Sbjct: 63  TCEYGMLPASTHDRMKRESSAGKQGGRTVEIQRLIGRSLRMSADLLKLGENTAYLDCDVI 122

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
            ADGGTR A ITGA  AL   +      +         K  VAAIS G++ G P++DL Y
Sbjct: 123 DADGGTRCAGITGAATAL--AIACRRGVAKGIFPENPFKESVAAISVGVIGGVPMLDLCY 180

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS  +VD N VMT+SG +VEVQG+AE   FS+     +++LA+  +  +  +Q++ +
Sbjct: 181 EEDSNAEVDMNVVMTESGKLVEVQGTAEGEPFSRARLNELIDLAEHGLKQVFAMQREAV 239


>gi|294056535|ref|YP_003550193.1| ribonuclease PH [Coraliomargarita akajimensis DSM 45221]
 gi|293615868|gb|ADE56023.1| ribonuclease PH [Coraliomargarita akajimensis DSM 45221]
          Length = 252

 Score =  196 bits (498), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 110/243 (45%), Positives = 147/243 (60%), Gaps = 12/243 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGWI 59
           R   R  +Q+R I     ++ +A GS LV FG T ++  A++++KVP W+R    + GW+
Sbjct: 11  RPDQRAVDQLRPIHFETGIAPHALGSVLVSFGQTRVICAASIDKKVPGWMRAQGVEGGWM 70

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           TAEY MLP ST +R  R+   G+  GR+ EIQR+IGR+LR+V DL  L  R I IDCDV+
Sbjct: 71  TAEYSMLPYSTLDRKPRDISRGKADGRTIEIQRLIGRSLRAVFDLKKLPGRTIWIDCDVL 130

Query: 120 QADGGTRTAAITGAWVALHDCLQHM----EDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
           QADGGTRTA+I+GA+VA    +Q +    E  +N F  S      VAAIS G+    P++
Sbjct: 131 QADGGTRTASISGAYVAAQIAVQKLIAAGELEANPFTDS------VAAISVGVFQDTPVL 184

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DL+Y ED    VDAN VMT +G  VEVQ S E ATF +     +L L    I +L  LQ+
Sbjct: 185 DLNYPEDKDASVDANIVMTGTGKYVEVQSSGEEATFDRAELDTLLELGAKGIQELSALQQ 244

Query: 236 DVI 238
             I
Sbjct: 245 QAI 247


>gi|254166930|ref|ZP_04873784.1| ribonuclease PH [Aciduliprofundum boonei T469]
 gi|254168500|ref|ZP_04875344.1| ribonuclease PH [Aciduliprofundum boonei T469]
 gi|289596090|ref|YP_003482786.1| ribonuclease PH [Aciduliprofundum boonei T469]
 gi|197622555|gb|EDY35126.1| ribonuclease PH [Aciduliprofundum boonei T469]
 gi|197624540|gb|EDY37101.1| ribonuclease PH [Aciduliprofundum boonei T469]
 gi|289533877|gb|ADD08224.1| ribonuclease PH [Aciduliprofundum boonei T469]
          Length = 234

 Score =  195 bits (495), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 101/238 (42%), Positives = 152/238 (63%), Gaps = 6/238 (2%)

Query: 3   LSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE 62
           +  R+ +++R + +     K   GS L+K GDT +L +A + E VP W++    GW+TAE
Sbjct: 1   MRNRKPDEIRNVEIIPNYQKKPYGSALIKQGDTVVLCSAQVIENVPDWLKEQNSGWLTAE 60

Query: 63  YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
           Y MLP S+  R+ R+   G   GRS+EI+R+IGR LR+ VDL  LG R I IDCDVIQAD
Sbjct: 61  YSMLPGSSETRIFRD--RGHVNGRSKEIERIIGRCLRAAVDLKKLGPRTIWIDCDVIQAD 118

Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYGE 181
           GGTRTA+IT  +VAL   ++ +     + +L +  +K  VAAIS G++ G P++DL Y E
Sbjct: 119 GGTRTASITAGFVALSLAIRRL---MKEGKLGENPIKYKVAAISAGIVNGEPLLDLAYEE 175

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  DVD N  M + G  +E+QG++E+   S+++   +L+LA+  I +L K Q++ ++
Sbjct: 176 DSQADVDINIAMNEEGKYIEIQGTSEKEPLSRENLNILLDLAEKGIKELFKKQEEALN 233


>gi|302338872|ref|YP_003804078.1| ribonuclease PH [Spirochaeta smaragdinae DSM 11293]
 gi|301636057|gb|ADK81484.1| ribonuclease PH [Spirochaeta smaragdinae DSM 11293]
          Length = 236

 Score =  194 bits (494), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 95/228 (41%), Positives = 145/228 (63%), Gaps = 2/228 (0%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           MR++        +  GSCL  +GDT ++ T +LE++VP ++     GW+TAEYGMLP ST
Sbjct: 1   MRDVQFQTSYLIHPAGSCLASYGDTKVICTVSLEDRVPSFLEGRGCGWLTAEYGMLPGST 60

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   K+  + G++ GRS EIQR+IGR+LR+ VD+  LG R + +DCDVIQADGGTRTA++
Sbjct: 61  GGGRKQREI-GKRDGRSTEIQRLIGRSLRASVDMEKLGERTLTVDCDVIQADGGTRTASV 119

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
           +G WVAL++ L  + +   +      LKG +AA+S G++ G  + DLDY  DS  +VD N
Sbjct: 120 SGGWVALYEALSALAEREGRGGADYYLKGQLAAVSVGIVDGQVVCDLDYAHDSRAEVDMN 179

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            V  +    VE+QG+ E+ TFS +   +++  A + +  + + Q+D +
Sbjct: 180 IVKLEEA-FVELQGTGEKGTFSSEQLASLIAAADEGLTFIFQKQRDAL 226


>gi|218439976|ref|YP_002378305.1| ribonuclease PH [Cyanothece sp. PCC 7424]
 gi|226736901|sp|B7KB81|RNPH_CYAP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|218172704|gb|ACK71437.1| ribonuclease PH [Cyanothece sp. PCC 7424]
          Length = 242

 Score =  194 bits (494), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 104/239 (43%), Positives = 154/239 (64%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   RQ +Q+R I      S++  GS L   G+T +L TAT++  VP ++ N+  GW+TA
Sbjct: 5   RPDSRQPDQLRPILFETNYSRFRVGSVLAHCGETRVLCTATIQPNVPKFLLNSGKGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE +  +  GR+QEIQR+IGR+LR+ +D   LG R IIID DV+QA
Sbjct: 65  EYRMLPGATPERQSRELM--QLSGRTQEIQRLIGRSLRACLDFERLGERTIIIDTDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRT AITG ++AL   ++ + +   + Q S  LK  VAA+S G++ G P +DL+Y E
Sbjct: 123 DAGTRTTAITGGYIALGLAIKKLLEV-GELQESP-LKLPVAAVSVGLIEGEPFLDLNYAE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D+  +VD N VMT +  ++EVQG+AE  +FS+     +L+LA+  I +L+  Q++ I++
Sbjct: 181 DTAAEVDFNVVMTGNLDLIEVQGTAESGSFSRLQLNQLLDLAQTGIQELLVAQQNAINS 239


>gi|149173903|ref|ZP_01852532.1| ribonuclease PH [Planctomyces maris DSM 8797]
 gi|148847433|gb|EDL61767.1| ribonuclease PH [Planctomyces maris DSM 8797]
          Length = 246

 Score =  194 bits (493), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 115/242 (47%), Positives = 150/242 (61%), Gaps = 12/242 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GW 58
           MR   RQ  Q+R I + R  +K   GS L+  GDT +L TA+L+  VP W +N ++  GW
Sbjct: 1   MRHDSRQPEQLRPIKVERGYTKATPGSILISAGDTVVLCTASLDNSVPPWKKNDENPSGW 60

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +TAEY MLP ST  R +R     R  GRS EIQR+IGR+LR+V+D  ALG R I +DCDV
Sbjct: 61  VTAEYNMLPGSTSPRKQR-----RADGRSSEIQRLIGRSLRAVIDFGALGPRTITVDCDV 115

Query: 119 IQADGGTRTAAITGAWVALHD-CLQHMEDC----SNKFQLSQVLKGHVAAISCGMLCGYP 173
           +QADGGTRT +ITG ++AL D  L   E C       F   ++    VAA+S G++ G P
Sbjct: 116 LQADGGTRTLSITGGFLALLDTVLAIPETCELAPGEVFDPKRIFSDSVAAVSVGVVNGEP 175

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           ++DLDY EDST  VD N VMT  G  +EVQG+AE  TF++    A L LA   I  L ++
Sbjct: 176 VLDLDYVEDSTAGVDMNVVMTGGGDFIEVQGTAEGQTFNRGMLDAQLELATAGIQQLSEI 235

Query: 234 QK 235
           Q+
Sbjct: 236 QR 237


>gi|299144136|ref|ZP_07037216.1| ribonuclease PH/Ham1 protein [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518621|gb|EFI42360.1| ribonuclease PH/Ham1 protein [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 438

 Score =  194 bits (493), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 98/234 (41%), Positives = 148/234 (63%), Gaps = 2/234 (0%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
            R+ ++MR I L    +   +GS L+K G+T ++ TA +E+KVP +++    GW++ EY 
Sbjct: 4   NRKFDEMRNIELELNYTSAPDGSVLIKCGNTKVICTAMIEDKVPFFLKGKNSGWLSCEYS 63

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           MLP ST  R  R+   G+  GRSQEIQR+IGR+LRS VDLS +G + I IDCDVI ADGG
Sbjct: 64  MLPGSTSVRKVRDISRGKLDGRSQEIQRLIGRSLRSCVDLSKIGEKTIWIDCDVISADGG 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
           TRT +I G+++AL   +++         L   +K  VAAIS G++    ++DL+Y EDS 
Sbjct: 124 TRTTSINGSFIALSLAVKNA--IRQGIILENPIKNKVAAISVGIVENEKLLDLNYDEDSN 181

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             VD N VM D+  I+E+QG+AE  +FS+     +++L++  I ++  +Q  V+
Sbjct: 182 AQVDLNVVMNDNKEIIEIQGTAEGRSFSRKELNELIDLSEIAIDNIFNIQNKVL 235


>gi|320352955|ref|YP_004194294.1| RNAse PH [Desulfobulbus propionicus DSM 2032]
 gi|320121457|gb|ADW17003.1| RNAse PH [Desulfobulbus propionicus DSM 2032]
          Length = 235

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/233 (46%), Positives = 149/233 (63%), Gaps = 3/233 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  + +R  S+   V  +A+GS L++ G+TH+L   T+E++VP ++++   GWIT
Sbjct: 1   MRSGERSADALRPFSVEYGVQPHADGSVLIRMGNTHVLCGVTVEDRVPPFLKDKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP +T +R +REAVSG   GR+ EIQR+IGR+LR +VDLS LG   + +DCDV+ 
Sbjct: 61  AEYGMLPCATHSRGRREAVSGLS-GRTHEIQRLIGRSLRMMVDLSLLGEHTLRVDCDVLN 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG  +A+   L  M +      L  +L   VAAIS G++ G P++DLDY 
Sbjct: 120 ADGGTRCASITGGALAVKMALARMVERGRLPALPPLLP--VAAISAGVVAGQPVLDLDYA 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           EDS+ +VDANFVM+  G  +EVQ +AE   F    F AM  LA      L  L
Sbjct: 178 EDSSAEVDANFVMSGDGRWIEVQSTAEGGPFHPQLFTAMAELAARGTGQLFGL 230


>gi|88808003|ref|ZP_01123514.1| Ribonuclease PH [Synechococcus sp. WH 7805]
 gi|88788042|gb|EAR19198.1| Ribonuclease PH [Synechococcus sp. WH 7805]
          Length = 340

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 100/240 (41%), Positives = 151/240 (62%), Gaps = 4/240 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ +++R  ++      +A  S +V+ G T +L +   E+ VP W R+   GW++A
Sbjct: 105 RKDGRQASELRPFAVEWDPMGFALSSVIVRTGRTAVLCSVCHEQGVPRWRRDQGLGWLSA 164

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP ST  R +RE +  +  GR+QEIQR+IGR+LR+ + + ALG   +++DCDVIQA
Sbjct: 165 EYRLLPGSTPERQRREWL--KLSGRTQEIQRLIGRSLRAALSMEALGENTLLVDCDVIQA 222

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTA+ITGAW+ALH     +   S     +  ++  VAA+S G+L G  ++DLDY E
Sbjct: 223 DAGTRTASITGAWLALHHACASL--VSQGLIPANPVRAQVAAVSVGLLQGEALLDLDYSE 280

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  DVD N VM  SG ++E+QG+AE ATFS+     +L+ A+  +  L++ Q + +  +
Sbjct: 281 DSQADVDLNVVMNASGELLELQGTAEGATFSRQQLNLLLDRAEPGLKQLMRAQNEALRTQ 340


>gi|298490673|ref|YP_003720850.1| ribonuclease PH ['Nostoc azollae' 0708]
 gi|298232591|gb|ADI63727.1| ribonuclease PH ['Nostoc azollae' 0708]
          Length = 246

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 101/239 (42%), Positives = 149/239 (62%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   ++R +S     +++A GS L K GDT +L T ++ + VP ++  T  GW+TA
Sbjct: 5   RPDGRNSYELRPLSFYSNFTRFASGSVLAKCGDTQVLCTVSVSDSVPKFLNGTGKGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE +  +  GR+QEIQR+IGR+LR+ +D   LG R +IID DV+QA
Sbjct: 65  EYRMLPSATQKRQERELL--KLSGRTQEIQRLIGRSLRAALDFEVLGERTLIIDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRT AITG++VAL   +  M       + S + +  VAA+S G+L G   +DL+Y E
Sbjct: 123 DAGTRTTAITGSFVALAHAISQMLQ-QGVLERSPLCR-QVAAVSVGLLAGEAFLDLNYIE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D    VD N VM  +  I+EVQG+AE  +F++     +L++A+  I +L+  Q+D I+N
Sbjct: 181 DVAATVDFNVVMNQNLEIIEVQGTAEEGSFNRQQLNKLLDVAEKGIQELLIAQRDAITN 239


>gi|51473808|ref|YP_067565.1| ribonuclease PH [Rickettsia typhi str. Wilmington]
 gi|51460120|gb|AAU04083.1| Phosphate-dependent exonuclease [Rickettsia typhi str. Wilmington]
          Length = 168

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 93/168 (55%), Positives = 121/168 (72%), Gaps = 2/168 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ NQ+R ISL      +AEGSCL+K G+TH++ +AT E  VP ++R    GWIT
Sbjct: 1   MRQSGRKSNQLRPISLELSPLIHAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNRGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGM+P ST NR+KRE   G+QGGR+QEIQR+IGR +R V++L  LG RQIIIDCDVI 
Sbjct: 61  AEYGMIPGSTSNRIKREVALGKQGGRTQEIQRLIGRVMRCVINLQKLGERQIIIDCDVIN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
           ADGGTRT+AITG+++ALH  ++ +     +      L   +AAISCG+
Sbjct: 121 ADGGTRTSAITGSYIALHLAIRLLMK--KRILKVNTLISQIAAISCGI 166


>gi|158317399|ref|YP_001509907.1| ribonuclease PH [Frankia sp. EAN1pec]
 gi|226736910|sp|A8L766|RNPH_FRASN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|158112804|gb|ABW15001.1| ribonuclease PH [Frankia sp. EAN1pec]
          Length = 260

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 107/235 (45%), Positives = 148/235 (62%), Gaps = 7/235 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR  +Q+R++++ R   ++AEGS L+  G T +L  A++ E VP W + +  GW+T
Sbjct: 2   IRVDGRTTDQLRDVTIERGWQEHAEGSALISAGRTRVLCAASVTEGVPRWRKGSGLGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+ +DL ALG   I IDCDV+ 
Sbjct: 62  AEYSMLPRATHTRNDRESVRGRIGGRTHEISRLIGRSLRAAIDLKALGENTIAIDCDVLL 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D  + +            +   V A+S G++ G P++DL Y 
Sbjct: 122 ADGGTRTAAITGAYVALADACRWL-------GRPAAIVTSVCAVSVGVVGGVPMLDLAYT 174

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDST D D N V T +G  VEVQG+AE   F +     +L+LA      L ++Q 
Sbjct: 175 EDSTADTDMNVVRTGAGGFVEVQGTAEGTPFERSTLDELLDLAVAGCTRLTEIQN 229


>gi|260435940|ref|ZP_05789910.1| ribonuclease PH [Synechococcus sp. WH 8109]
 gi|260413814|gb|EEX07110.1| ribonuclease PH [Synechococcus sp. WH 8109]
          Length = 247

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/239 (42%), Positives = 148/239 (61%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  Q+R  S+      +A  S +V  G T +L +  LE+KVP W +    GW++A
Sbjct: 8   RTDGRRPQQLRPFSVNWNPMGFALSSLVVHTGRTAVLCSVCLEDKVPRWRKGEGFGWLSA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP ST  R  RE +  +  GR+QEIQR+IGR+LR+V+D+  LG R ++IDCDVIQA
Sbjct: 68  EYRLLPGSTPQRQSRELM--KLSGRTQEIQRLIGRSLRAVIDMERLGERTLLIDCDVIQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTA+ITGAW+AL    + + D     Q    L   VAA+S G++ G  ++DLDY E
Sbjct: 126 DAGTRTASITGAWLALDQACRSLVDQGVLEQ--SPLIDQVAAVSVGLVDGQALLDLDYSE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  +VD N V +  G ++E+QG+AE A FS+     +L+LA+  +  L++ Q+   + 
Sbjct: 184 DSRAEVDLNVVQSGDGRLLEIQGTAEGAPFSRSQLNELLDLAEPGLTSLMQAQRQAFNE 242


>gi|61216057|sp|Q8DLA4|RNPH_THEEB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
          Length = 242

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/238 (42%), Positives = 147/238 (61%), Gaps = 4/238 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ  ++R     R  +++A GS L + G T +L T + +E VP ++  T  GW+TA
Sbjct: 5   RPDGRQPQELRSHQFQRHFTQFALGSVLAQAGQTQVLCTVSFKEGVPKFLEGTGQGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE +  +  GR+QEIQR+IGR+LRS VDLS LG   +I+D DV+QA
Sbjct: 65  EYRMLPSATRPRQEREFL--KLSGRTQEIQRLIGRSLRSAVDLSLLGECTLIVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTR+ AITG ++AL D L  +            L+  VAA+S G++   P +DL Y E
Sbjct: 123 DAGTRSLAITGGYIALVDALSAL--LQQGVLRKSPLRHQVAAVSVGLIDDEPYLDLSYAE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D    VD N VMT SG  +EVQG+AE  +F +     +L++A+  I +LI++Q+ V++
Sbjct: 181 DVAASVDFNVVMTGSGQFIEVQGTAEMGSFDRGTLDRLLDVARQGIQELIEIQQRVLA 238


>gi|312199598|ref|YP_004019659.1| ribonuclease PH [Frankia sp. EuI1c]
 gi|311230934|gb|ADP83789.1| ribonuclease PH [Frankia sp. EuI1c]
          Length = 250

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 111/235 (47%), Positives = 147/235 (62%), Gaps = 7/235 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R++++ R     AEGS L+ FG T +L  A++ E VP W + +  GW+TA
Sbjct: 3   RHDGRAADQLRDVTIVRGWQDQAEGSALINFGRTRVLCAASVTEGVPRWRKGSGLGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+ +DL  LG   I IDCDV+ A
Sbjct: 63  EYSMLPRATNTRNDRESVKGRIGGRTHEISRLIGRSLRACIDLKQLGENTIAIDCDVLLA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D    +          + + G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADACGWL-------GRPKAISGGVSAVSVGVVGGVPMLDLAYVE 175

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           DS  D D N V TD+G  VEVQG+AE   F +     +L+LA    A L K Q D
Sbjct: 176 DSAADTDMNVVCTDTGSFVEVQGTAEGVVFDRAMLDQLLDLAVAGCAQLAKAQAD 230


>gi|22298135|ref|NP_681382.1| ribonuclease PH [Thermosynechococcus elongatus BP-1]
 gi|22294313|dbj|BAC08144.1| ribonuclease PH [Thermosynechococcus elongatus BP-1]
          Length = 249

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/238 (42%), Positives = 147/238 (61%), Gaps = 4/238 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ  ++R     R  +++A GS L + G T +L T + +E VP ++  T  GW+TA
Sbjct: 12  RPDGRQPQELRSHQFQRHFTQFALGSVLAQAGQTQVLCTVSFKEGVPKFLEGTGQGWLTA 71

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE +  +  GR+QEIQR+IGR+LRS VDLS LG   +I+D DV+QA
Sbjct: 72  EYRMLPSATRPRQEREFL--KLSGRTQEIQRLIGRSLRSAVDLSLLGECTLIVDADVLQA 129

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTR+ AITG ++AL D L  +            L+  VAA+S G++   P +DL Y E
Sbjct: 130 DAGTRSLAITGGYIALVDALSAL--LQQGVLRKSPLRHQVAAVSVGLIDDEPYLDLSYAE 187

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D    VD N VMT SG  +EVQG+AE  +F +     +L++A+  I +LI++Q+ V++
Sbjct: 188 DVAASVDFNVVMTGSGQFIEVQGTAEMGSFDRGTLDRLLDVARQGIQELIEIQQRVLA 245


>gi|116075628|ref|ZP_01472887.1| ribonuclease PH [Synechococcus sp. RS9916]
 gi|116066943|gb|EAU72698.1| ribonuclease PH [Synechococcus sp. RS9916]
          Length = 255

 Score =  192 bits (487), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 102/240 (42%), Positives = 147/240 (61%), Gaps = 6/240 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR    +R  ++      +A  S +V+ G T +L +   +E VP W +    GW++A
Sbjct: 17  RNDGRSAADLRPFAINWDPMGFAISSLIVRTGRTAVLCSVCHQEGVPRWRKGQGKGWLSA 76

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP ST  R  RE +  +  GR+QEIQR+IGR+LR+ +D+ ALG   ++IDCDVIQA
Sbjct: 77  EYRLLPGSTPERQNRELL--KLSGRTQEIQRLIGRSLRACIDMEALGENTLLIDCDVIQA 134

Query: 122 DGGTRTAAITGAWVAL-HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           D GTRTA+ITGAWVAL H C Q +   +      Q +   VAA+S G++   P++DLDY 
Sbjct: 135 DAGTRTASITGAWVALKHACDQLL---AQGLVTRQPITKQVAAVSVGLVNSAPLLDLDYS 191

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  DVD N VM +  H++E+QG+AE A FS+     +L+LA+  +  L+  Q+  + N
Sbjct: 192 EDSRADVDLNVVMDEHQHLLEIQGTAEGAAFSRSELNGLLDLAEPGLQQLMDSQRQALRN 251


>gi|330952125|gb|EGH52385.1| ribonuclease PH [Pseudomonas syringae Cit 7]
          Length = 186

 Score =  192 bits (487), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 95/185 (51%), Positives = 129/185 (69%), Gaps = 1/185 (0%)

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
            G +TAEYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +D
Sbjct: 3   RGGLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVD 62

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
           CDVIQADGGTRTA+ITGA VAL D L+ ++      +    LK  +AA+S GM  G P++
Sbjct: 63  CDVIQADGGTRTASITGAMVALADALKVIKK-RGGLKGGDPLKQMIAAVSVGMYQGEPVL 121

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DLDY EDS  + D N VMT +G  +EVQG+AE A F  +   AML LA+  + +L +LQ+
Sbjct: 122 DLDYLEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQR 181

Query: 236 DVISN 240
             +++
Sbjct: 182 AALAD 186


>gi|78211822|ref|YP_380601.1| RNAse PH [Synechococcus sp. CC9605]
 gi|123578898|sp|Q3AMY6|RNPH_SYNSC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|78196281|gb|ABB34046.1| ribonuclease PH [Synechococcus sp. CC9605]
          Length = 247

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 102/239 (42%), Positives = 148/239 (61%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  Q+R  S+T     +A  S +V  G T +L +  LE KVP W +    GW++A
Sbjct: 8   RTDGRRPEQLRPFSVTWNPMGFALSSLVVHTGRTAVLCSVCLEGKVPRWRKGEGLGWLSA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP ST  R  RE +  +  GR+QEIQR+IGR+LR+V+D+  LG R ++IDCDVIQA
Sbjct: 68  EYRLLPGSTPQRQSRELM--KLSGRTQEIQRLIGRSLRAVIDMERLGERTLLIDCDVIQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTA+ITGAW+AL    + + +     Q    L   VAA+S G++ G  ++DLDY E
Sbjct: 126 DAGTRTASITGAWLALDQACRSLVEQGVLEQ--SPLVDQVAAVSVGLVDGQALLDLDYSE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  +VD N V    G ++E+QG+AE A FS+     +L+LA+  ++ L++ Q+   + 
Sbjct: 184 DSRAEVDLNVVQAGDGRLLEIQGTAEGAPFSRSQLNELLDLAEPGLSSLMQAQRQAFTE 242


>gi|307719046|ref|YP_003874578.1| ribonuclease PH [Spirochaeta thermophila DSM 6192]
 gi|306532771|gb|ADN02305.1| ribonuclease PH [Spirochaeta thermophila DSM 6192]
          Length = 226

 Score =  191 bits (485), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 102/225 (45%), Positives = 135/225 (60%), Gaps = 5/225 (2%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           MR +S    V  Y  GSCLV FG+T +L  A++EE VP +I     GW+TAEY MLP S 
Sbjct: 1   MRPVSFEAGVLAYPAGSCLVSFGNTKVLCAASIEEGVPPFIEQEGEGWLTAEYAMLPASV 60

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
               KR      +  R+ EIQR IGR+LR+ VD + LG   I++DCDV+QADGGTRTAAI
Sbjct: 61  PEGRKRR----ERDSRAVEIQRFIGRSLRAAVDRTRLGPYTIVMDCDVLQADGGTRTAAI 116

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
           +G WVAL+  L  + +          L G VAA+S GM+ G  + DLD+  D    VD N
Sbjct: 117 SGGWVALYQALGKLAEMQGVEGPDYFLVGQVAAVSVGMVEGRLVADLDFAHDLAAQVDMN 176

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            VM D   +VEVQG+ E+ +F++D   AML+LA   I  + + Q+
Sbjct: 177 VVMCDD-RLVEVQGNGEKGSFTRDELDAMLDLAAREIRIIYEAQR 220


>gi|148238656|ref|YP_001224043.1| ribonuclease PH [Synechococcus sp. WH 7803]
 gi|147847195|emb|CAK22746.1| Ribonuclease PH [Synechococcus sp. WH 7803]
          Length = 241

 Score =  191 bits (484), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 100/237 (42%), Positives = 147/237 (62%), Gaps = 4/237 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ + +R  ++      +A  S +V+ G T +L +   EE VP W R+   GW++A
Sbjct: 6   RKDGRQASALRPFAVEWDPMGFALSSVIVRTGRTAVLCSVCHEEGVPRWRRDQGLGWLSA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP ST  R +RE +  +  GR+QEIQR+IGR+LR+ + + ALG   ++IDCDVIQA
Sbjct: 66  EYRLLPGSTPERQRREWL--KLSGRTQEIQRLIGRSLRAALSMEALGENTLLIDCDVIQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTA++TGAW+AL +  + +         S  +   VAA+S G+L G  ++DLDY E
Sbjct: 124 DAGTRTASVTGAWLALQNACESL--VKQGVLQSNPVCSQVAAVSVGLLGGEALLDLDYSE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  DVD N VM DSG ++E+QG+AE   FS+     +L+ A+  +  L+  QK+ +
Sbjct: 182 DSQADVDLNVVMNDSGELLELQGTAEGKAFSRQQLNLLLDRAEPGLKQLMDAQKEAL 238


>gi|313887997|ref|ZP_07821675.1| tRNA nucleotidyltransferase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845952|gb|EFR33335.1| tRNA nucleotidyltransferase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 238

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 99/226 (43%), Positives = 143/226 (63%), Gaps = 2/226 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           RQ ++ R+I +T     + +GS L++ G T ++ +A +E KVP ++R    GW+++EY M
Sbjct: 5   RQNDEARQIRITPNYLDHPDGSVLIECGKTRVICSAMIENKVPGFLRGKNKGWLSSEYSM 64

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST  R  R+   G+  GRS EI R+IGRALR+ +DL  +G R I IDCDVI ADGGT
Sbjct: 65  LPGSTPTRKVRDISKGKLDGRSSEISRLIGRALRTCIDLDKIGERTIWIDCDVISADGGT 124

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTAAITG+++AL   ++   + + KF+   ++   VAAIS G + G  +VDLD+ EDS  
Sbjct: 125 RTAAITGSYIALKLAVKKALE-NKKFEEDPIV-SKVAAISVGKVNGVKLVDLDFKEDSNA 182

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           DVD N VM D   ++E+QG+ E+ TFS +     L  AK  I ++ 
Sbjct: 183 DVDLNVVMNDDFQLIEIQGTGEKDTFSIEELNEFLLGAKRCIGEIF 228


>gi|149198134|ref|ZP_01875181.1| ribonuclease PH [Lentisphaera araneosa HTCC2155]
 gi|149138736|gb|EDM27142.1| ribonuclease PH [Lentisphaera araneosa HTCC2155]
          Length = 238

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 103/221 (46%), Positives = 138/221 (62%), Gaps = 5/221 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GRQ +Q+REI       K + GS L   G T ++ T  +++ +P W  +   GW+T
Sbjct: 1   MRVDGRQNDQLREIKFELGFVKNSLGSALSACGLTEVICTVNIKDGLPGWKSSGSGGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP +T  R KREA     GGRS EIQR+IGR LR+ VDL  LG R I IDCDV+ 
Sbjct: 61  AEYRMLPGATHTRSKREA---GVGGRSSEIQRLIGRTLRAAVDLDKLGDRTIQIDCDVLN 117

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+I GA +AL + L+ ME+      +S ++K  ++AIS G++ G  ++DL Y 
Sbjct: 118 ADGGTRCASINGAMLALMNALKKMEE--QGVDISGIIKTPLSAISVGVVKGQALLDLCYK 175

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           EDS  DVD N +MT  G  VEVQG+ E A FS+     +L+
Sbjct: 176 EDSAADVDMNVIMTAKGDFVEVQGTGEEAVFSRQELNELLD 216


>gi|209523065|ref|ZP_03271622.1| ribonuclease PH [Arthrospira maxima CS-328]
 gi|209496652|gb|EDZ96950.1| ribonuclease PH [Arthrospira maxima CS-328]
          Length = 242

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 98/237 (41%), Positives = 150/237 (63%), Gaps = 4/237 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ +Q+R +      +++A  S L K G+T +L T T++  VP ++++T  GW+TA
Sbjct: 6   RPDGRQPHQLRPVQFELDYTQFAAASVLAKSGNTQVLCTVTIQPGVPRFLQDTGKGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE +  +  GR+QEIQR+IGR+LR+ VDL A+G   + +D DV+QA
Sbjct: 66  EYRMLPGATPQRQPRELM--KLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRT +ITG +VAL      M     + + S ++   +AAIS GM+ G P++DL+Y E
Sbjct: 124 DAGTRTTSITGGFVALAHAFNKMVK-QGQLKRSPIIH-QIAAISVGMMHGEPLLDLNYQE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   D+D N VM D   I+E+QG+AE  + +++    +L+ A+  I +L +LQ+ V+
Sbjct: 182 DVAADIDFNVVMRDDLGIIELQGTAEAESLNRNQLNQILDYAEKGITELCQLQRQVL 238


>gi|284989916|ref|YP_003408470.1| ribonuclease PH [Geodermatophilus obscurus DSM 43160]
 gi|284063161|gb|ADB74099.1| ribonuclease PH [Geodermatophilus obscurus DSM 43160]
          Length = 250

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 113/237 (47%), Positives = 153/237 (64%), Gaps = 1/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R +++TR    +AEGS LV+FG T +L  A++ E VP W + +  GW+TA
Sbjct: 9   RPDGRAADQLRPVTITRGWLDHAEGSVLVEFGRTRVLCAASVTEGVPRWRKGSGLGWVTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+ +DL ALG   + IDCDV+QA
Sbjct: 69  EYAMLPRATHTRGDRESVKGRIGGRTHEISRLIGRSLRAAIDLGALGENSVAIDCDVLQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  + +     +   VL+  VAA+S G++ G P +DL Y E
Sbjct: 129 DGGTRTAAITGAYVALADAVGWLGERRKLARPRAVLQ-SVAAVSVGVVDGQPRLDLAYEE 187

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D     D N V T  G  VEVQG+AE   F +    A+L+LA    A+L ++Q D +
Sbjct: 188 DVRAGTDMNVVCTGDGSFVEVQGTAENGVFDRAALDALLDLAVGGCAELSRIQADAL 244


>gi|317968641|ref|ZP_07970031.1| ribonuclease PH [Synechococcus sp. CB0205]
          Length = 244

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/239 (42%), Positives = 145/239 (60%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR    +R          +A  S  V  G+T ++ +  LEE VP W + +  GW++A
Sbjct: 7   RRDGRSATDLRSTRFAWDPMGFALSSVTVYTGNTAVICSVCLEEGVPKWRKGSGKGWLSA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           +Y +LP ST +R  RE +  +  GR+QEIQR+I R+LR+ +DL ALG R + IDCDV+QA
Sbjct: 67  DYRLLPASTPSRQPRELM--KLSGRTQEIQRLIARSLRACLDLEALGERTLQIDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTA+ITGAW AL   LQ +E           L G VAA+S G++ G  ++DLDY E
Sbjct: 125 DAGTRTASITGAWAALAVGLQRLEQ--RGVLERSPLVGQVAAVSVGLVDGAALLDLDYSE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  +VD N VM    H++E+QG+AE A FS+    ++++LA+  I  L++ QK  ++ 
Sbjct: 183 DSRAEVDLNVVMNQEQHLLEIQGTAEGAPFSRQQLSSLVDLAESGIDQLMQAQKQALAE 241


>gi|119493583|ref|ZP_01624247.1| ribonuclease PH [Lyngbya sp. PCC 8106]
 gi|119452573|gb|EAW33756.1| ribonuclease PH [Lyngbya sp. PCC 8106]
          Length = 241

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 97/241 (40%), Positives = 151/241 (62%), Gaps = 6/241 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL  R+ +Q+R +      ++Y+  S L K G+T ++   T++  VP +++++  GW+TA
Sbjct: 5   RLDDRKPDQLRPVHFELNYTRYSSASVLTKCGNTQVICNVTIQPGVPNFLKDSGQGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE +  +  GR+QEIQR+IGR+LR+ VDL  LG + +IID DV+QA
Sbjct: 65  EYRMLPGATQQRHSRELM--KLSGRTQEIQRLIGRSLRAAVDLKVLGEKTVIIDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH-VAAISCGMLCGYPIVDLDYG 180
           D GTRTA+ITG +VAL +    + D   K +L +    H +AAIS G+L G P +DL+Y 
Sbjct: 123 DAGTRTASITGGFVALANAFNKLVD---KGELEKSPISHQIAAISVGLLEGEPYLDLNYE 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   DVD N VM D   ++E+QG+AE  +F++     +++ A+  I  L++ Q   + +
Sbjct: 180 EDVAADVDCNIVMNDQLGMIELQGTAEAESFTRQQLNKIMDYAEIGIKQLLEAQNQALKS 239

Query: 241 E 241
           +
Sbjct: 240 D 240


>gi|186682825|ref|YP_001866021.1| ribonuclease PH [Nostoc punctiforme PCC 73102]
 gi|226736921|sp|B2J9Q1|RNPH_NOSP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|186465277|gb|ACC81078.1| ribonuclease PH [Nostoc punctiforme PCC 73102]
          Length = 247

 Score =  188 bits (477), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 100/239 (41%), Positives = 146/239 (61%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   ++R IS     +++A GS L + GDT +L T ++ + VP ++  T  GW+TA
Sbjct: 5   RPDGRLPYELRPISFYPSFTRFAPGSVLARCGDTQVLCTVSVNKGVPKFLEGTGKGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE +  +  GR+QEIQR+IGR+LR+ VD  ALG R + +D DV+QA
Sbjct: 65  EYRMLPSATQKRQERELL--KLSGRTQEIQRLIGRSLRAAVDFEALGERTLTVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRT AITG++VAL   +  +            L G VAA+S G+L   P +DL+Y E
Sbjct: 123 DAGTRTTAITGSFVALAHAISKL--LQEGVLERSPLCGQVAAVSVGLLEAEPFLDLNYIE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D    VD N VM     I+EVQG+AE  +FS+     +L++A+  I +L+  Q++ I++
Sbjct: 181 DVAATVDFNVVMDQHLGIIEVQGTAEEGSFSRTQLDQLLDVAQKGIQELLIAQREAIAD 239


>gi|282900962|ref|ZP_06308895.1| Ribonuclease PH [Cylindrospermopsis raciborskii CS-505]
 gi|281194053|gb|EFA69017.1| Ribonuclease PH [Cylindrospermopsis raciborskii CS-505]
          Length = 246

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 95/239 (39%), Positives = 149/239 (62%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ +Q+R ++     +++A GS L + G+T +L T ++ E VP ++  +  GW+TA
Sbjct: 5   RLDGRQPDQLRTLNFYPHFTRFAPGSVLAQCGETQVLCTVSITEGVPKFLMGSGKGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE +  +  GR+QEIQR+IGR+LR+ ++   LG + + +D DV+QA
Sbjct: 65  EYRMLPSATQQRQERELL--KLSGRTQEIQRLIGRSLRAALNFEILGEKTLTVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRT +ITG ++AL   + H+            L G +AA+S G+L G   +DLD+ E
Sbjct: 123 DAGTRTISITGGFIALAHAITHL--LQQGVLERSPLCGQIAAVSVGLLKGEAFLDLDFTE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   +VD N VM    +I+EVQG+AE  +FS+     +L++A+  I +L+  Q+ VI +
Sbjct: 181 DVNAEVDFNVVMNSKLNIIEVQGTAEAGSFSRQQLNQLLDVAETGIRELLIAQRSVIPD 239


>gi|315186954|gb|EFU20712.1| RNAse PH [Spirochaeta thermophila DSM 6578]
          Length = 223

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 98/222 (44%), Positives = 133/222 (59%), Gaps = 5/222 (2%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
           +S    V  Y  GSCLV FG+T +L  A++EE VP +I     GW+TAEY MLP S    
Sbjct: 1   MSFEVGVLAYPAGSCLVSFGNTKVLCAASIEEGVPPFIEQEGEGWLTAEYAMLPASVPEG 60

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
            KR      +  R+ EIQR IGR+LR+ +D + LG   I+IDCDV+QADGGTRTAAI+G 
Sbjct: 61  RKRR----ERDSRAVEIQRFIGRSLRAALDRTRLGPYTIVIDCDVLQADGGTRTAAISGG 116

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
           WVAL+  L+ + +          L G VAA+S G++ G  + DLD+  D    VD N VM
Sbjct: 117 WVALYQALEKLAELHGVEGPEYFLAGQVAAVSVGIVEGQLVADLDFAHDLAAQVDMNVVM 176

Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            D   +VEVQG+ E+  F+++   AML+LA   I  + + Q+
Sbjct: 177 CDD-RLVEVQGNGEKGAFTREELDAMLDLAAQEIGLIYEAQR 217


>gi|113954193|ref|YP_729551.1| ribonuclease PH [Synechococcus sp. CC9311]
 gi|113881544|gb|ABI46502.1| ribonuclease PH [Synechococcus sp. CC9311]
          Length = 241

 Score =  185 bits (470), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 97/238 (40%), Positives = 146/238 (61%), Gaps = 4/238 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+   +R  S++     +A  S ++  G T +L +   +E VP W ++   GW++A
Sbjct: 6   RNDGRRPGDLRPFSISWDPMGFALSSVIIHSGRTTVLCSVCHQEGVPRWRKDQGKGWLSA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP ST  R  RE +  +  GR+QEIQR+IGR+LR+ +D+ ALG   + IDCDVIQA
Sbjct: 66  EYRLLPGSTPERQNRELL--KLSGRTQEIQRLIGRSLRAAIDMEALGENTLRIDCDVIQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTAAI+G+WVAL    + +         +  ++  VAA+S G++   P++DLDY E
Sbjct: 124 DAGTRTAAISGSWVALQRACERL--VQQGVLNTNPVQSQVAAVSVGVIHKRPLLDLDYSE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  DVD N VM   GH++E+QG+AE A FS+     +L+LA+  +  ++  Q+  +S
Sbjct: 182 DSQADVDLNVVMNGEGHLLELQGTAEGAPFSRHQLNDLLDLAEPGLKKIMDDQRAALS 239


>gi|38234421|ref|NP_940188.1| ribonuclease PH [Corynebacterium diphtheriae NCTC 13129]
 gi|61215954|sp|Q6NFN6|RNPH_CORDI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|38200684|emb|CAE50380.1| Putative ribonuclease PH [Corynebacterium diphtheriae]
          Length = 241

 Score =  185 bits (470), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 105/234 (44%), Positives = 146/234 (62%), Gaps = 3/234 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +QMR + +TR  +    GS LV+FG+T ++ TA++E  VP + R++  GW+TA
Sbjct: 6   RADGRAVDQMRTVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE++ G+  GR+ EI R+IGR+LR+ VDL  LG   I IDCDV+QA
Sbjct: 66  EYAMLPAATAERNARESMRGKVKGRTHEISRLIGRSLRAAVDLDELGENTINIDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +++          LK  VAA+S G++ G   +DL Y E
Sbjct: 126 DGGTRTASITGAYVALADAIAVLKE--QGVVPGNPLKAAVAAVSVGVIDGQVCLDLPYEE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS  DVD N +M      VE+QG+ E  TF +D    +L+ A+    +L   QK
Sbjct: 184 DSRADVDMNVIMQ-GDRFVEIQGTGEHNTFDRDELAVILDFAQKGCQELFAAQK 236


>gi|223940166|ref|ZP_03632028.1| ribonuclease PH [bacterium Ellin514]
 gi|223891183|gb|EEF57682.1| ribonuclease PH [bacterium Ellin514]
          Length = 255

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 100/216 (46%), Positives = 137/216 (63%), Gaps = 6/216 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGW 58
           +R  GR   Q+R +     ++ YA GS LV++G+T ++   T+EE VP W++  N   GW
Sbjct: 17  LRTDGRLPGQLRPLRFQNHIAPYATGSTLVEWGNTRVICGVTVEESVPRWMKEQNVIGGW 76

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           ITAEY MLP ST  R +R+   G+  GRSQEIQR+IGRA+R+ +DL  +GSR I +DCDV
Sbjct: 77  ITAEYSMLPYSTLQRKQRDISKGKIDGRSQEIQRLIGRAMRAAIDLEKIGSRTIWVDCDV 136

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDL 177
           +QADGGTRTAAITGA+VAL   ++ +     K + S +L  H  A     +    P++DL
Sbjct: 137 LQADGGTRTAAITGAYVALSLAVRKLMS-EGKLKESPML--HAVAAVSVGVVNRQPLLDL 193

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
            Y ED+   VD N VM   G  +E+QG+ E ATFS+
Sbjct: 194 CYVEDAAAAVDLNLVMNSVGEFIELQGTGEEATFSE 229


>gi|87125085|ref|ZP_01080932.1| ribonuclease PH [Synechococcus sp. RS9917]
 gi|86167405|gb|EAQ68665.1| ribonuclease PH [Synechococcus sp. RS9917]
          Length = 220

 Score =  183 bits (465), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/220 (44%), Positives = 141/220 (64%), Gaps = 6/220 (2%)

Query: 23  YAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGR 82
           +A  S LV+ G T +L +   E  VP W   +  GW++AEY +LP ST  R KRE +  +
Sbjct: 3   FALSSVLVRSGRTAVLCSIGHEAGVPRWRMGSGKGWLSAEYRLLPGSTPERQKRELL--K 60

Query: 83  QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQ 142
             GR+QEIQR+IGR+LR+ +D+ ALG   +++DCDVIQAD GTRTAAITGAWVAL    +
Sbjct: 61  LSGRTQEIQRLIGRSLRACLDMEALGENTLLVDCDVIQADAGTRTAAITGAWVALQRACE 120

Query: 143 HMEDCSNKFQLS-QVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVE 201
            +     +  LS   ++  VAA+S G++ G  ++DL+Y EDS  DVD N VM  SG ++E
Sbjct: 121 RL---VKRGDLSHNPVRDQVAAVSVGLIGGEALLDLNYSEDSQADVDLNVVMDGSGRLLE 177

Query: 202 VQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           +QG+AE A FS+     +L+LA+  +  L+  Q+  ++ E
Sbjct: 178 LQGTAEGAPFSRSELTRLLDLAEPGLTALMAAQQRALAPE 217


>gi|291567427|dbj|BAI89699.1| ribonuclease PH [Arthrospira platensis NIES-39]
          Length = 242

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 95/237 (40%), Positives = 148/237 (62%), Gaps = 4/237 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ +Q+R +      +++A  S L K G+T +L T T++  VP ++++T  GW+TA
Sbjct: 6   RPDGRERDQLRPVQFELDYTQFAAASVLAKSGNTQVLCTVTIQPGVPRFLQDTGKGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE +  +  GR+QEIQR+IGR+LR+ VDL A+G   + +D DV+QA
Sbjct: 66  EYRMLPGATPQRQPRELM--KLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRT +I G +VAL      M     + + S ++   +AAIS GM+ G  ++DL+Y E
Sbjct: 124 DAGTRTTSINGGFVALAHAFNKMVK-RGELKRSPIIH-QIAAISVGMMHGEALLDLNYQE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   D+D N VM D   I+E+QG+AE  + +++    +L+ A+  I +L +LQ+ V+
Sbjct: 182 DVAADIDFNVVMRDDLGIIELQGTAEAESLNRNQLNQILDYAEKGITELCQLQRQVL 238


>gi|284053737|ref|ZP_06383947.1| ribonuclease PH [Arthrospira platensis str. Paraca]
          Length = 241

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 95/237 (40%), Positives = 148/237 (62%), Gaps = 4/237 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ +Q+R +      +++A  S L K G+T +L T T++  VP ++++T  GW+TA
Sbjct: 5   RPDGRERDQLRPVQFELDYTQFAAASVLAKSGNTQVLCTVTIQPGVPRFLQDTGKGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE +  +  GR+QEIQR+IGR+LR+ VDL A+G   + +D DV+QA
Sbjct: 65  EYRMLPGATPQRQPRELM--KLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRT +I G +VAL      M     + + S ++   +AAIS GM+ G  ++DL+Y E
Sbjct: 123 DAGTRTTSINGGFVALAHAFNKMVK-RGELKRSPIIH-QIAAISVGMMHGEALLDLNYQE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   D+D N VM D   I+E+QG+AE  + +++    +L+ A+  I +L +LQ+ V+
Sbjct: 181 DVAADIDFNVVMRDDLGIIELQGTAEAESLNRNQLNQILDYAEKGITELCQLQRQVL 237


>gi|86739583|ref|YP_479983.1| ribonuclease PH [Frankia sp. CcI3]
 gi|123765222|sp|Q2JEN8|RNPH_FRASC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|86566445|gb|ABD10254.1| RNAse PH [Frankia sp. CcI3]
          Length = 247

 Score =  182 bits (462), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 101/242 (41%), Positives = 142/242 (58%), Gaps = 7/242 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R++++ R   ++AEGS L+  G T +L  A++   VP W + +  GW+T
Sbjct: 2   IRADGRRPDELRQVTILRGWQEHAEGSALISAGRTRVLCAASVTTGVPRWRKGSGLGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V GR  GR+ EI R+IGR+LR+ +DL ALG   I IDCDV+ 
Sbjct: 62  AEYSMLPRATDTRNDRESVRGRISGRTHEISRLIGRSLRACIDLKALGENTIAIDCDVLL 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D  + +            +   V         G  ++DL Y 
Sbjct: 122 ADGGTRTAAITGAYVALVDAARWLGRPDAIITSVSAVSVGVVK-------GEAMLDLAYS 174

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDST D D N V T +   VEVQG+AE   F +    ++L+LA    A L  +Q + +  
Sbjct: 175 EDSTADTDMNVVCTGADGFVEVQGTAEGTPFDRTMLDSLLDLAVRGCAQLTAIQTEALRG 234

Query: 241 EV 242
            V
Sbjct: 235 PV 236


>gi|75908883|ref|YP_323179.1| ribonuclease PH [Anabaena variabilis ATCC 29413]
 gi|123609297|sp|Q3M9Q2|RNPH_ANAVT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|75702608|gb|ABA22284.1| RNAse PH [Anabaena variabilis ATCC 29413]
          Length = 247

 Score =  179 bits (455), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 97/239 (40%), Positives = 145/239 (60%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  ++R I+   + +++A GS L   G+T +L T ++ E VP ++  +  GW+TA
Sbjct: 5   RPDGRKPYELRPINFHTKFTRFAPGSVLTICGETKVLCTVSVAESVPKFLAGSGKGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE +  +  GR+QEIQR+IGR+LR+ +D  ALG R + +D DV+QA
Sbjct: 65  EYRMLPSATQQRHERELL--KLSGRTQEIQRLIGRSLRAAIDFEALGERTLTVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTAAITG +VAL + +  +            L G VAA+S G+L     +DL+Y E
Sbjct: 123 DAGTRTAAITGGFVALAEAISQL--LQRGVLERSPLCGQVAAVSVGLLEQEAYLDLNYIE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D    VD N VM  +  I+EVQG+AE  +FS+     +L+ A+  I  L+  Q+  I++
Sbjct: 181 DVAATVDFNVVMNKNLGIIEVQGTAEEGSFSRTQLNQLLDCAETGIQQLLIAQQKAITD 239


>gi|289607155|emb|CBI60875.1| unnamed protein product [Sordaria macrospora]
          Length = 148

 Score =  179 bits (454), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 80/128 (62%), Positives = 103/128 (80%)

Query: 7   QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
             ++MR I++    +++AEGSCL+ FGDT +L TA+LEE++P W+R    GW+TAEYGML
Sbjct: 21  HPDEMRPITIETNFTRHAEGSCLIGFGDTKVLVTASLEERLPPWLRGKGEGWVTAEYGML 80

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           PR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQADGGTR
Sbjct: 81  PRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVIQADGGTR 140

Query: 127 TAAITGAW 134
           TA+I+GAW
Sbjct: 141 TASISGAW 148


>gi|170078680|ref|YP_001735318.1| ribonuclease PH [Synechococcus sp. PCC 7002]
 gi|169886349|gb|ACB00063.1| ribonuclease PH [Synechococcus sp. PCC 7002]
          Length = 240

 Score =  179 bits (454), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 99/239 (41%), Positives = 147/239 (61%), Gaps = 6/239 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL  R  +Q+R        +K+A+ S L   GDT +L T ++EE VP ++R++  GW+TA
Sbjct: 5   RLDNRFFDQLRPFKFELDFTKFAQASVLTSCGDTKVLCTVSVEEGVPPFLRDSGQGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY M+P +T  R +RE +  +  GR+QEIQR+IGR+LR+ +DL ALG R I ID DV+QA
Sbjct: 65  EYRMMPGATPERQRREFM--KLSGRTQEIQRLIGRSLRAAIDLKALGERTITIDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRT AITG +V L    + +   +     S ++   VAAIS G++ G   +DL+Y E
Sbjct: 123 DGGTRTTAITGGYVGLAIACERLVK-AGILGKSPII-APVAAISVGLIAGQAYLDLNYLE 180

Query: 182 DSTIDVDANFVMTDSG--HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   DVD N VM      +++EVQG+AE  ++++     +L++A+  I  ++ LQ   I
Sbjct: 181 DVAADVDFNVVMIGGQGLNLIEVQGTAEAGSYNRAQLNQILDVAEKGIQTIMTLQTKAI 239


>gi|297622726|ref|YP_003704160.1| ribonuclease PH [Truepera radiovictrix DSM 17093]
 gi|297163906|gb|ADI13617.1| ribonuclease PH [Truepera radiovictrix DSM 17093]
          Length = 236

 Score =  178 bits (452), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 96/220 (43%), Positives = 137/220 (62%), Gaps = 10/220 (4%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GWITAE 62
           GRQ  Q+REI +T   +++AEGS LV++GDT +L T T+E K+P  +R  K   GW+TAE
Sbjct: 4   GRQPFQLREIRVTPGYNRFAEGSALVEWGDTRVLATVTVENKLPPHLRGKKGRVGWLTAE 63

Query: 63  YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
           Y MLPRST  R +RE +    GGRS EIQR+IGR+LRSV DL+    + + +D DV+QAD
Sbjct: 64  YAMLPRSTAERTQRERLYA--GGRSLEIQRLIGRSLRSVTDLTLFHGQTLTVDVDVLQAD 121

Query: 123 GGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           GGTR A I   + ALH     +  +   +++ L+      VAA+S G++ G  ++DLD+ 
Sbjct: 122 GGTRCAGILAGYAALHHAAGRLVRKGALDEWPLTH----EVAAVSVGVVRGETLLDLDFH 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           ED+  ++D N V T  G +VEVQGS E        +  ++
Sbjct: 178 EDAAAEIDLNVVATADGKLVEVQGSGEERPIDAGRYVELV 217


>gi|289644629|ref|ZP_06476695.1| ribonuclease PH [Frankia symbiont of Datisca glomerata]
 gi|289505557|gb|EFD26590.1| ribonuclease PH [Frankia symbiont of Datisca glomerata]
          Length = 234

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 98/228 (42%), Positives = 135/228 (59%), Gaps = 7/228 (3%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
           +++TR    +AEGS L++FG T +L  A++ E VP W + +  GW+TAEY MLPR+T  R
Sbjct: 1   MNITRGWQDHAEGSALIEFGRTRVLCAASVTEGVPRWRKGSGLGWVTAEYSMLPRATNTR 60

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
             RE+V GR GGR+ EI R+IGR+LR+ +DL  LG   I IDCDV+ ADGGTRTA+ITGA
Sbjct: 61  NDRESVRGRIGGRTHEISRLIGRSLRTCIDLKILGENTIAIDCDVLVADGGTRTASITGA 120

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
           +VAL D    +       +    +   V A         P++DL Y EDS  D D N + 
Sbjct: 121 YVALSDACGWLGRPDALIRSVAAVSVGVVAGR-------PLLDLAYDEDSGADTDMNVIC 173

Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           T  G  VEVQG+AE   F +     +L+LA    A L ++Q+  ++  
Sbjct: 174 TGDGGFVEVQGTAEGLPFDRAMLDQLLDLAVGGCARLTEVQRAALAGP 221


>gi|149924421|ref|ZP_01912786.1| ribonuclease PH [Plesiocystis pacifica SIR-1]
 gi|149814728|gb|EDM74302.1| ribonuclease PH [Plesiocystis pacifica SIR-1]
          Length = 248

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/252 (41%), Positives = 150/252 (59%), Gaps = 23/252 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR  +Q+R ++LT   +  A+GS L+  G T +L TA++E + P W+  +  GW+T
Sbjct: 1   MRFDGRSNDQLRPLTLTPGFTSAADGSVLIATGGTRVLCTASVESRTPSWL--SSGGWVT 58

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL----GSRQIIIDC 116
           AEY MLP +T  R  R+A      GR++EIQR+IGR+LR+ VDLS L    G   I+ DC
Sbjct: 59  AEYAMLPGATRPRGGRKA-----NGRAKEIQRLIGRSLRAAVDLSKLVGPDGGVSIVCDC 113

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GYP 173
           DVI+ADGGTRTAAITGAWVAL   L+ +       +   +    VAA+S G++      P
Sbjct: 114 DVIEADGGTRTAAITGAWVALELALRRLVAGGKLSEHPGI--APVAAVSVGVIPVEGSEP 171

Query: 174 --IVDLDYGEDSTIDVDANFVM-----TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             ++DL Y EDS   VD N VM       +  +VE+QG+ E+  FS++    ML+LA+  
Sbjct: 172 EVMLDLPYSEDSRAIVDLNVVMRRAPEGGTPRLVEIQGTGEQGDFSREQLNRMLDLAEGG 231

Query: 227 IADLIKLQKDVI 238
           I +L+  Q+  +
Sbjct: 232 ITNLLAGQQAAL 243


>gi|162456258|ref|YP_001618625.1| ribonuclease PH [Sorangium cellulosum 'So ce 56']
 gi|161166840|emb|CAN98145.1| ribonuclease PH [Sorangium cellulosum 'So ce 56']
          Length = 257

 Score =  175 bits (443), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 107/242 (44%), Positives = 138/242 (57%), Gaps = 7/242 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +  R + +     + AEGS L + G T +L TA++E  VP W+     GW+TA
Sbjct: 3   RPDGRALDVHRPVEMILGFHRNAEGSVLYRAGRTVVLCTASVEPTVPAWMMGKGAGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGR---QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           EY M PRS+  R  RE   GR     GR+QEIQR+IGRALR+ +DL  LG + I IDCDV
Sbjct: 63  EYQMHPRSSPAR--REPRDGRGKAPSGRTQEIQRLIGRALRAAIDLKHLGEQTIAIDCDV 120

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ++ADGGTRTA+IT  +VAL   L  M    +    + VL+  VAAIS G L G   +DL 
Sbjct: 121 LEADGGTRTASITAGFVALALALDRMRAAGSLE--APVLRDQVAAISVGHLPGGLALDLV 178

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y EDS+  VD N V T  G IVEVQ +AE     +     M +LA   +A L   Q   +
Sbjct: 179 YTEDSSARVDMNVVATAVGSIVEVQATAEDEAIPRAELDRMTDLALAGVASLASAQHRAL 238

Query: 239 SN 240
           S+
Sbjct: 239 SS 240


>gi|318042724|ref|ZP_07974680.1| ribonuclease PH [Synechococcus sp. CB0101]
          Length = 244

 Score =  174 bits (442), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 95/224 (42%), Positives = 137/224 (61%), Gaps = 4/224 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  + +R          +A  S  V  G T ++ +  LEE VP W + +  GW++A
Sbjct: 7   RSDGRSPSDLRPTRFDWDPMGFALSSVTVHTGRTAVICSVCLEEDVPKWRQGSGKGWLSA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           +Y +LP ST +R  RE +  +  GR+QEIQR+I R+LR+ +DL ALG R + IDCDV+QA
Sbjct: 67  DYRLLPASTPSRQPRELM--KLSGRTQEIQRLIARSLRACLDLEALGERSLHIDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTR+A+ITGAW AL   L+ +E        + +L+  VAA+S G++    ++DLDY E
Sbjct: 125 DAGTRSASITGAWAALALGLRRLE-ARGVLNGTPMLE-QVAAVSVGLVGSQALLDLDYSE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
           DS  +VD N VM   G ++EVQG+AE A FS+     +L+LA +
Sbjct: 183 DSRAEVDLNVVMNSQGQLLEVQGTAEGAPFSRQQLNQLLDLADE 226


>gi|17227565|ref|NP_484113.1| ribonuclease PH [Nostoc sp. PCC 7120]
 gi|21759403|sp|Q8Z0M2|RNPH_ANASP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|17135047|dbj|BAB77593.1| ribonuclease PH [Nostoc sp. PCC 7120]
          Length = 247

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 92/223 (41%), Positives = 137/223 (61%), Gaps = 4/223 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  ++R I+   + +++A GS L   G+T +L T ++ E VP ++  +  GW+TA
Sbjct: 5   RPDGRKPYELRPINFHTKFTRFAPGSVLTICGETKVLCTVSVAESVPKFLTGSGKGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE +  +  GR+QEIQR+IGR+LR+ +D  ALG R + +D DV+QA
Sbjct: 65  EYRMLPSATQQRHERELL--KLSGRTQEIQRLIGRSLRAALDFEALGERTLTVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTAAITG +VAL + +  +            L G +AA+S G+L     +DL+Y E
Sbjct: 123 DAGTRTAAITGGFVALAEAISQL--LQRGVLERSPLCGQIAAVSVGLLEQEAYLDLNYIE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           D    VD N VM  +  I+EVQG+AE  +FS+     +L+ A+
Sbjct: 181 DVAATVDFNVVMNKNLGIIEVQGTAEEGSFSRTQLNQLLDCAE 223


>gi|237739458|ref|ZP_04569939.1| ribonuclease PH [Fusobacterium sp. 2_1_31]
 gi|229423066|gb|EEO38113.1| ribonuclease PH [Fusobacterium sp. 2_1_31]
          Length = 171

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 117/169 (69%), Gaps = 2/169 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ N+ R+I +T+ V+ YAEGS L++ G+T ++ TA++ EKVP ++R T  GW+T
Sbjct: 2   LREDGRKFNEERKIKITKDVNIYAEGSVLIEVGNTKVICTASVSEKVPPFLRGTGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +REA  G+  GR+ EIQR+IGRALRS +DL  LG R I IDCDVIQ
Sbjct: 62  AEYSMLPRATNERNQREASKGKLTGRTVEIQRLIGRALRSAIDLEKLGERLITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           ADGGTRT +ITG +VAL   ++ +     +      L  +VAAIS G +
Sbjct: 122 ADGGTRTTSITGGYVALALAIKKL--LKEEILEENPLIANVAAISVGKI 168


>gi|169829487|ref|YP_001699645.1| ribonuclease PH [Lysinibacillus sphaericus C3-41]
 gi|168993975|gb|ACA41515.1| Ribonuclease PH [Lysinibacillus sphaericus C3-41]
          Length = 196

 Score =  172 bits (436), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 92/187 (49%), Positives = 122/187 (65%), Gaps = 7/187 (3%)

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
           WITAEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCD
Sbjct: 7   WITAEYSMLPRATAQRTPRESSRGKVNGRTMEIQRLIGRALRAVVDLEALGERTVWIDCD 66

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLCGY-PI 174
           VIQADGGTRTA+ITGA+VA+   +     E    KF ++  L    AA S G++     +
Sbjct: 67  VIQADGGTRTASITGAFVAMTQAIAKFAEEKPFVKFPVTDFL----AATSVGIVEEQGAV 122

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           +DL+Y ED    VD N VMT +G  VE+QG+ E ATFS++    +L L +  I  L++LQ
Sbjct: 123 LDLNYVEDVAAAVDMNIVMTGAGRFVELQGTGEEATFSREELNELLALGEKGIQQLVELQ 182

Query: 235 KDVISNE 241
           K  ++ +
Sbjct: 183 KTALAEQ 189


>gi|320104936|ref|YP_004180527.1| RNAse PH [Isosphaera pallida ATCC 43644]
 gi|319752218|gb|ADV63978.1| RNAse PH [Isosphaera pallida ATCC 43644]
          Length = 240

 Score =  169 bits (428), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/242 (43%), Positives = 142/242 (58%), Gaps = 8/242 (3%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR   ++R +   R  +  + GS LV+ G T +L TA L ++VP ++     GW+T
Sbjct: 2   MRHDGRTPQEIRPVRFERGFAAASAGSVLVRSGSTVILVTANLVDQVPPFLEGRGTGWLT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP ST +R  R+       GR  EIQR+IGR+LR++VDL  LG R + +D DVIQ
Sbjct: 62  AEYAMLPGSTPSRKPRKV-----DGRCTEIQRLIGRSLRAMVDLERLGPRTLHLDADVIQ 116

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAIT A VA  D L     C    +   +LKG +AA+S G++ G  ++DLDY 
Sbjct: 117 ADGGTRTAAITAACVATADALNK---CLGAEEARAILKGRLAAVSVGVVDGVGLLDLDYS 173

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   +VD N V      +VEVQG+AE A F +     +L+LA   I  L+ LQ D +  
Sbjct: 174 EDVRAEVDLNVVRLGPRGLVEVQGTAEGAPFDRRRLEELLDLADQGIDRLMALQLDAVGP 233

Query: 241 EV 242
            V
Sbjct: 234 GV 235


>gi|126640155|ref|YP_001083139.1| ribonuclease PH [Acinetobacter baumannii ATCC 17978]
          Length = 174

 Score =  168 bits (426), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 92/174 (52%), Positives = 117/174 (67%), Gaps = 2/174 (1%)

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           MLPRST +R  REA  G+Q GR+QEIQR+IGR+LR++VDL  LG   I IDCDVIQADGG
Sbjct: 1   MLPRSTHSRCDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQADGG 60

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
           TRTA+ITGA VAL D +  +   + K      LKG VAAIS GM     ++DL Y EDS 
Sbjct: 61  TRTASITGAAVALVDAMNVL--LAQKKIKQDPLKGLVAAISVGMYQDEVLLDLCYEEDSN 118

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
              D N VMT +G  +E+QG+AE   F++    AML +A+  IA+LIK Q++ +
Sbjct: 119 CQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELIKKQQEAL 172


>gi|15806593|ref|NP_295308.1| ribonuclease PH [Deinococcus radiodurans R1]
 gi|21759421|sp|Q9RU11|RNPH_DEIRA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|6459349|gb|AAF11146.1|AE002002_4 ribonuclease PH [Deinococcus radiodurans R1]
          Length = 246

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/229 (41%), Positives = 132/229 (57%), Gaps = 6/229 (2%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
           GR     R +S+ R V+ +A GS  +K G T +L T TL++K    +R  K GW+TAEY 
Sbjct: 11  GRDALTPRPVSVQRGVNPHAPGSAHLKMGRTEILATVTLDDKPAPHMRGKKEGWLTAEYS 70

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           MLPRST +R  RE     Q GR  EIQR++GRALRS +DL    ++ + +DCDV+ ADGG
Sbjct: 71  MLPRSTTDRQARE--RNLQNGRRHEIQRLLGRALRSSMDLRPFKNQTLYVDCDVLVADGG 128

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH-VAAISCGMLCGYPIVDLDYGEDS 183
           TR A++     ALHD    +    N  QLS+    H V AIS G++     VDLDY ED 
Sbjct: 129 TRVASVLAGHAALHDFCDRL---INSGQLSEWPIVHNVGAISVGLIGDELRVDLDYEEDK 185

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
               D N + TD+G +VEVQG AE    + D +  +L+     + D+++
Sbjct: 186 VARADLNVIATDTGLLVEVQGGAELGPITVDEYTRLLSCGVASVQDVMR 234


>gi|294668514|ref|ZP_06733611.1| tRNA nucleotidyltransferase [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291309477|gb|EFE50720.1| tRNA nucleotidyltransferase [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 157

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 77/152 (50%), Positives = 112/152 (73%), Gaps = 3/152 (1%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
           + R  + +R + +T     +A+GS L++ G+T ++ TA+++E VP ++R    GW+TAEY
Sbjct: 7   TSRAADALRAVKITPHFLPHADGSVLIECGNTKVICTASIDESVPPFLRGKGQGWVTAEY 66

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           GMLP ST  R++REA +G+QGGR+QEIQR+IGR+LR+ VD++ LG RQI+IDCDVIQADG
Sbjct: 67  GMLPASTATRMRREAAAGKQGGRTQEIQRLIGRSLRAAVDMAKLGERQILIDCDVIQADG 126

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ 155
           GTRTA+I+GA+VAL      M++C     L +
Sbjct: 127 GTRTASISGAYVALA---LAMKNCFRTVGLPK 155


>gi|226357252|ref|YP_002786992.1| tRNA nucleotidyltransferase [Deinococcus deserti VCD115]
 gi|226319242|gb|ACO47238.1| putative tRNA nucleotidyltransferase (Phosphate-dependent
           exonuclease) (Ribonuclease PH) (RNase PH) [Deinococcus
           deserti VCD115]
          Length = 249

 Score =  164 bits (416), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 96/218 (44%), Positives = 126/218 (57%), Gaps = 6/218 (2%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
           GR   + R +S+ R V+ +A GS  +  G T +L T TLE+K    +R  K GW+TAEY 
Sbjct: 14  GRGLLEPRPVSVKRGVNPHAPGSAHLIMGRTEILATVTLEDKPAPHMRGKKEGWLTAEYS 73

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           MLPR+T +R  RE     Q GR  EIQR++GRALR+ VDL    ++ I +DCDV+ ADGG
Sbjct: 74  MLPRATNDRQARE--RNLQNGRRHEIQRLLGRALRASVDLKYFRNQTIYVDCDVLVADGG 131

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYGEDS 183
           TR A+I     ALHD    +    N  QLS+  L   V AIS G++     VDLDY ED 
Sbjct: 132 TRVASILAGHAALHDFCDRL---INSGQLSEWPLTHKVGAISVGLVGEEVRVDLDYAEDK 188

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
               D N V TD+G ++EVQG AE    S   +  +L+
Sbjct: 189 VARADLNVVATDTGLVIEVQGGAEEGPISLAEYSQLLH 226


>gi|291533813|emb|CBL06926.1| ribonuclease PH [Megamonas hypermegale ART12/1]
          Length = 153

 Score =  164 bits (416), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 77/151 (50%), Positives = 105/151 (69%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+  R  +Q+R   +T+   KY  GS L++ G+T ++  AT+++ VP ++R +  GW+ A
Sbjct: 3   RIDRRNADQLRRFKITKYFQKYPAGSVLIETGNTKVICAATIQDGVPSFLRGSGTGWLNA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP +T  R  REA  GRQ GR+QEIQR+IGR LRSV+D  ALG R +IIDCDVIQA
Sbjct: 63  EYSLLPSATLTRSPREASRGRQNGRTQEIQRLIGRCLRSVMDFKALGERTVIIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQ 152
           DGGTRTA+ITGA+VAL + L  + +  N F 
Sbjct: 123 DGGTRTASITGAFVALAEALATIYNPKNHFH 153


>gi|161616815|ref|YP_001590779.1| hypothetical protein SPAB_04634 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161366179|gb|ABX69947.1| hypothetical protein SPAB_04634 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 174

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/176 (51%), Positives = 115/176 (65%), Gaps = 2/176 (1%)

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           MLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDVIQADGG
Sbjct: 1   MLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQADGG 60

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
           TRTA+ITGA VAL D L  +   +N    +  +KG VAA+S G++ G  I DL+Y EDS 
Sbjct: 61  TRTASITGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDSA 118

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            + D N VMT+ G I+EVQG+AE   FS +    +L LA+  I  ++  QK  + N
Sbjct: 119 AETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 174


>gi|213417938|ref|ZP_03351026.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 148

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/150 (55%), Positives = 105/150 (70%), Gaps = 2/150 (1%)

Query: 37  LLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR 96
           +L TA++EE VP +++    GWITAEYGMLPR+T  R  REA  G+QGGR+ EIQR+I R
Sbjct: 1   MLCTASIEEGVPRFLKGQGQGWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIAR 60

Query: 97  ALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV 156
           ALR+ VDL  LG   I +DCDVIQADGGTRTA+ITGA VAL D L  +   +N    +  
Sbjct: 61  ALRAAVDLKTLGEFTITLDCDVIQADGGTRTASITGACVALADALNKL--VANGKLKTNP 118

Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
           +KG VAA+S G++ G  I DL+Y EDS  +
Sbjct: 119 MKGMVAAVSVGIVNGEAICDLEYVEDSAAE 148


>gi|225023880|ref|ZP_03713072.1| hypothetical protein EIKCOROL_00746 [Eikenella corrodens ATCC
           23834]
 gi|224943354|gb|EEG24563.1| hypothetical protein EIKCOROL_00746 [Eikenella corrodens ATCC
           23834]
          Length = 167

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 113/158 (71%), Gaps = 2/158 (1%)

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
           ++REA  G+Q GR+QEIQR+IGR+LR+ VDLS LG RQI+IDCDVIQADGGTRTA+ITGA
Sbjct: 1   MRREAAQGKQSGRTQEIQRLIGRSLRAAVDLSQLGERQILIDCDVIQADGGTRTASITGA 60

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
           +VALH  +  +   + K   + + +  VAA+S G++ G P++DLDY EDS  D D N VM
Sbjct: 61  YVALHLAIGKLL-AAGKLAHNPI-REAVAAVSLGIVGGVPLLDLDYPEDSGCDSDINLVM 118

Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           T SG+I+E+QG+AE   FS      +L L +  I +L+
Sbjct: 119 TASGNIIEIQGTAEGDAFSPAALTQLLALGQKGIVELL 156


>gi|302341929|ref|YP_003806458.1| ribonuclease PH [Desulfarculus baarsii DSM 2075]
 gi|301638542|gb|ADK83864.1| ribonuclease PH [Desulfarculus baarsii DSM 2075]
          Length = 232

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/233 (40%), Positives = 140/233 (60%), Gaps = 12/233 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   QMR + ++  V+ YAEGS +  FG T +L TA++E+  P ++     GWITA
Sbjct: 3   RIDGRNPGQMRPVVISGGVNPYAEGSAICAFGQTKVLCTASVEQGAPRFLEGAGQGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  R+     Q GR++EI R++GRALR+  DL+AL    I IDCDV+ A
Sbjct: 63  EYAMLPRATHTRTGRDHA---QAGRAKEISRLVGRALRAAADLAALDGYTIRIDCDVLVA 119

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAA++G WVAL   L+ +     +          V A+S G + G  +VDL Y E
Sbjct: 120 DGGTRTAAVSGGWVALALALRGLGLQPPR---------QVMALSAGRVDGRLLVDLCYAE 170

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           DS+ ++D N V+   G ++E+QG+ ER  FS +    ++ +++    D++  Q
Sbjct: 171 DSSAELDLNMVLAADGQLIEIQGTGERGVFSPEELMELIAISRQAAGDIVAAQ 223


>gi|27528790|emb|CAD29620.1| hypothetical protein [Streptomyces olivaceoviridis]
          Length = 180

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 85/170 (50%), Positives = 111/170 (65%)

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+VVD  ALG   I++DCDV+QADGG
Sbjct: 1   MLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVVDYKALGENTIVLDCDVLQADGG 60

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
           TRTAAITGA+VAL D +   +         + + G V+A+S G++ G P++DL Y ED  
Sbjct: 61  TRTAAITGAYVALADAVAWAQGKKLIRAGRKPITGTVSAVSVGIVGGVPLLDLCYEEDVK 120

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D D N V T  G  VEVQG+AE   F++D   A+L+LA     +L  LQ
Sbjct: 121 ADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVSGCTELAALQ 170


>gi|111220956|ref|YP_711750.1| ribonuclease PH [Frankia alni ACN14a]
 gi|111148488|emb|CAJ60159.1| ribonuclease PH [Frankia alni ACN14a]
          Length = 204

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/199 (45%), Positives = 119/199 (59%), Gaps = 21/199 (10%)

Query: 47  VPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA 106
           VP W + +  GW+TAEY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+ +DL+A
Sbjct: 5   VPRWRKGSGLGWVTAEYSMLPRATNTRNDRESVRGRIGGRTHEISRLIGRSLRACIDLAA 64

Query: 107 LGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC 166
           LG   I IDCDV+ ADGGTRTAAITGA+VAL D  + +              G  AAI+ 
Sbjct: 65  LGENTIAIDCDVLLADGGTRTAAITGAYVALVDAARWL--------------GRPAAITT 110

Query: 167 GMLC-------GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
            +         G P++DL Y EDST D D N V T +   VEVQG+AE   F +     +
Sbjct: 111 SVAAVSVGVVRGEPMLDLAYTEDSTADTDMNVVCTGADGFVEVQGTAEGVPFDRAMLDNL 170

Query: 220 LNLAKDRIADLIKLQKDVI 238
           L+LA    A L ++Q + +
Sbjct: 171 LDLAVFGCAQLAEIQAEAL 189


>gi|94986185|ref|YP_605549.1| ribonuclease PH [Deinococcus geothermalis DSM 11300]
 gi|94556466|gb|ABF46380.1| RNAse PH [Deinococcus geothermalis DSM 11300]
          Length = 237

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 88/229 (38%), Positives = 130/229 (56%), Gaps = 6/229 (2%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
           GR     R +S+ R V+ +A GS  ++ G T +L T ++E+K    +R  K GW+TAEY 
Sbjct: 8   GRDALTPRPLSVRRGVNPHAPGSVHLQLGRTEILATVSVEDKPAPHMRGKKEGWLTAEYA 67

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           MLPR+T +R  RE     Q GR  EIQR++GRALR+ +DL     + + +DCDV+ ADGG
Sbjct: 68  MLPRATTDRQARE--RNLQNGRRHEIQRLLGRALRAGIDLRHFRGQTLYVDCDVLVADGG 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH-VAAISCGMLCGYPIVDLDYGEDS 183
           TR A++   + ALHD    +    +  +LS+    H V A+S G++     VDLDY ED 
Sbjct: 126 TRVASVLAGYAALHDFADRL---IHSGKLSEWPLVHAVGAVSVGLVGDELRVDLDYAEDK 182

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
               D N V TDSG ++E QG AE    +   +  +L +  + +  L++
Sbjct: 183 AARADLNVVATDSGLLIEAQGGAEEGPITPAEYVRLLTVGVEAVGALLR 231


>gi|320335008|ref|YP_004171719.1| ribonuclease PH [Deinococcus maricopensis DSM 21211]
 gi|319756297|gb|ADV68054.1| ribonuclease PH [Deinococcus maricopensis DSM 21211]
          Length = 236

 Score =  158 bits (399), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 89/221 (40%), Positives = 126/221 (57%), Gaps = 6/221 (2%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R   + R + +TR V+ +AEGS L+  G T +L T T++ KVP  +R  K GW+ AEY M
Sbjct: 5   RPTTEPRPLHVTRGVNMHAEGSALLHLGRTQVLATVTVDPKVPPHMRGKKTGWLMAEYSM 64

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +PR+T +R  R+       GR  EIQR++GRA R+ VDL     R +++DCDV+QADGGT
Sbjct: 65  MPRATQDRTPRD--RNLSNGRRHEIQRLLGRAFRATVDLRHFRDRTLVVDCDVLQADGGT 122

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYGEDST 184
           R A++   + AL D   + +      +LS+  L   V A S G++ G   VDLDY ED  
Sbjct: 123 RVASVLAGYAALWD---YADRLIRTGKLSEWPLLHEVGACSVGLVGGEVRVDLDYLEDVQ 179

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
            + D N V T SG ++E QG AE A  +   +  +L    D
Sbjct: 180 AEADLNVVATSSGLLIEAQGGAEGAPIAPGVYEQLLRAGLD 220


>gi|313680799|ref|YP_004058538.1| RNAse PH [Oceanithermus profundus DSM 14977]
 gi|313153514|gb|ADR37365.1| RNAse PH [Oceanithermus profundus DSM 14977]
          Length = 240

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 89/231 (38%), Positives = 125/231 (54%), Gaps = 6/231 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR     R + +T R   YAEGS LV+ G T +L   +L   VP  ++  + GW+ A
Sbjct: 3   RPDGRSPTGRRPLKITPRYLDYAEGSALVELGRTRVLVAVSLTPGVPRHMQGKRSGWLMA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LPRST +R +RE    + GGR+QE+QR +GRA R+ VDL  L ++ I++D DVIQA
Sbjct: 63  EYNLLPRSTESRTQRERF--KLGGRTQEVQRFLGRAFRAAVDLDLLPNQTIVVDADVIQA 120

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLDYG 180
           DGGTR AAI G + AL   +Q  +      +L        AAIS G   G  + VDLD  
Sbjct: 121 DGGTRVAAILGGYAAL---VQAFDALVRAGRLDDWPLTEFAAISLGWAGGDEVLVDLDAR 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           ED  +  D   V T  G ++E+ G  E     +  +  M++    +I  L+
Sbjct: 178 EDDRVHADLTVVGTAEGELIEIHGGGEGRPVPRAIYDRMVDEGLRQIPGLV 228


>gi|297565611|ref|YP_003684583.1| ribonuclease PH [Meiothermus silvanus DSM 9946]
 gi|296850060|gb|ADH63075.1| ribonuclease PH [Meiothermus silvanus DSM 9946]
          Length = 235

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/234 (38%), Positives = 128/234 (54%), Gaps = 11/234 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   +MR +S+    + YAEGS LV+ G T +L T +L + VP  +R  + GW+  
Sbjct: 3   RKDGRAPLEMRPLSIHTGYNLYAEGSALVELGHTKVLVTVSLTDGVPRHVR-PREGWLMT 61

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LPRST  R +RE    +  GR+ EIQR +GRA R+V+DLS+L  + ++ID DV+QA
Sbjct: 62  EYNLLPRSTKERKERE--RQKLSGRTAEIQRFMGRAFRAVLDLSSLPGKTVVIDADVLQA 119

Query: 122 DGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLD 178
           DGGTR A++ G + ALH  L  M      +++ L +      AAIS G      I +DL 
Sbjct: 120 DGGTRVASLIGGYAALHQALDKMVRSGALDEWPLQE-----FAAISLGWFGEERILLDLT 174

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           + ED     D   V T  G ++EV G  E     Q  +  ML      I +L++
Sbjct: 175 HVEDENAWADLTVVATQGGEVIEVHGGGEGRAVPQPVYKQMLETGLGFIPELVR 228


>gi|291295492|ref|YP_003506890.1| ribonuclease PH [Meiothermus ruber DSM 1279]
 gi|290470451|gb|ADD27870.1| ribonuclease PH [Meiothermus ruber DSM 1279]
          Length = 238

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/244 (37%), Positives = 134/244 (54%), Gaps = 11/244 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   ++R ++L      YAEGS LV+ G T +L   +L + VP  + + + GW+ A
Sbjct: 3   RKDGRAAQELRPLTLRMGYVHYAEGSALVELGHTKVLVNVSLTDGVPRHV-SGREGWLMA 61

Query: 62  EYGMLPRSTGNRVKREAVSGRQ--GGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           EY +LPRST  R +RE    RQ   GR+ EIQR +GRA R+ +DLS L ++ ++ID DVI
Sbjct: 62  EYNLLPRSTKERKERE----RQKISGRTAEIQRFLGRAFRAALDLSLLPNKTVVIDADVI 117

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLD 178
           QADGGTR A++ G + ALH     M+   N+ +L +      AA+S G +     ++DL 
Sbjct: 118 QADGGTRVASLLGGYAALHMA---MDRLVNQGKLDEWPLTEFAAVSVGWMSDDSLLLDLT 174

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             ED     D   V T SG I+E+ G+ E     +  + AML +    I +L++     +
Sbjct: 175 QIEDENAWADLTVVATQSGDIIELHGAGEGRPVPRSTYQAMLEMGLAHIPELVRRVHAQL 234

Query: 239 SNEV 242
            N V
Sbjct: 235 KNRV 238


>gi|254468299|ref|ZP_05081705.1| ribonuclease PH [beta proteobacterium KB13]
 gi|207087109|gb|EDZ64392.1| ribonuclease PH [beta proteobacterium KB13]
          Length = 161

 Score =  147 bits (372), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 106/160 (66%), Gaps = 2/160 (1%)

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
           ++REA  G+Q GR+QEIQR+IGR+LR+++DL+ +G   + +DCDV+QADGGTRTA+ITGA
Sbjct: 1   MQREAARGKQSGRTQEIQRLIGRSLRAMIDLTKIGENTLQVDCDVLQADGGTRTASITGA 60

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
             A+ D +++M     K      +   +AAIS G++    +VDLDY EDS  + D N VM
Sbjct: 61  ACAIEDAVEYM--LKAKLISESPIIKKIAAISAGIVDSKVLVDLDYDEDSNCETDMNIVM 118

Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           T+    +E+QG+AE   FSQD    +L L+ D I  + ++
Sbjct: 119 TEDKQFIEIQGTAEGNPFSQDELNEILTLSSDAIQSIFQI 158


>gi|328949911|ref|YP_004367246.1| ribonuclease PH [Marinithermus hydrothermalis DSM 14884]
 gi|328450235|gb|AEB11136.1| ribonuclease PH [Marinithermus hydrothermalis DSM 14884]
          Length = 240

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 126/244 (51%), Gaps = 10/244 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   +MR + +T   + +AEGS LV+ G T +L T ++ + VP  +   + GW+  
Sbjct: 3   RKDGRGPLEMRPLVITPNYNAFAEGSALVELGQTRVLATVSITDGVPRHVHPRRSGWLMC 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LPR+T  R +RE    + GGR+QE+QR +GRA R+ +DL AL  + +I+D DV+QA
Sbjct: 63  EYSLLPRATPTRTQRERF--KLGGRTQEVQRFLGRAFRAALDLKALAGKTVIVDADVLQA 120

Query: 122 DGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLD 178
           DGGTR A+I G + AL   L  M  +   + + L +       A+S G       ++DL 
Sbjct: 121 DGGTRVASILGGYAALFLALDRMVRDGTLDDWPLLE-----FGAVSLGWFGEDRVLLDLT 175

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             ED     D   V T  G ++E+ G  E     +  +  M+    + I  L+      +
Sbjct: 176 AIEDENAWADLTVVATRDGELIEIHGGGEGRPVPRAVYERMVAAGLEVIPSLVAAVHRAV 235

Query: 239 SNEV 242
           S  +
Sbjct: 236 SKPL 239


>gi|3341558|emb|CAA13123.1| z11f [Vibrio cholerae]
          Length = 138

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/136 (50%), Positives = 91/136 (66%), Gaps = 4/136 (2%)

Query: 101 VVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKG 159
           +VDL A+G   I +DCDVIQADGGTRTA+ITGA VAL D   H+     K QL +  +KG
Sbjct: 1   MVDLEAMGEIMITVDCDVIQADGGTRTASITGASVALADAFAHL---IAKGQLKKNPMKG 57

Query: 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
           HVAA+S G+L    + DL+Y EDS  D D N VMT+ G ++E+QG+AE   FS +    +
Sbjct: 58  HVAAVSVGILGEDVLCDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLEL 117

Query: 220 LNLAKDRIADLIKLQK 235
           L +AK  IAD++ +QK
Sbjct: 118 LAVAKKGIADIVAVQK 133


>gi|6433781|emb|CAB60663.1| RnpH protein [Bradyrhizobium japonicum]
          Length = 86

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 67/86 (77%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
          MR S R  +++R ++L R V KYAEGSCLVKFGDTH+L TATLE+++P W++    GW+T
Sbjct: 1  MRPSRRAPDELRPVTLERGVVKYAEGSCLVKFGDTHVLVTATLEDRLPPWLKGQGRGWVT 60

Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGR 86
          AEYGMLPR+T  R +REA +G+Q GR
Sbjct: 61 AEYGMLPRATSERTRREASAGKQSGR 86


>gi|213854161|ref|ZP_03382693.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
          Typhi str. M223]
          Length = 86

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/84 (60%), Positives = 65/84 (77%)

Query: 9  NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
          NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWITAEYGMLPR
Sbjct: 3  NQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPR 62

Query: 69 STGNRVKREAVSGRQGGRSQEIQR 92
          ST  R  REA  G+QGGR+ EIQR
Sbjct: 63 STHTRNAREAAKGKQGGRTMEIQR 86


>gi|167464772|ref|ZP_02329861.1| ribonuclease PH [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 80

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 58/78 (74%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
          MR  GRQ N++R + +T   +K+AEGS L++ GDT ++ TAT+EE+VP +++N   GW+T
Sbjct: 1  MRADGRQPNELRPVRITPNYNKHAEGSVLIEVGDTKVICTATIEERVPPFLKNEGKGWVT 60

Query: 61 AEYGMLPRSTGNRVKREA 78
          AEY MLPR+T  R +REA
Sbjct: 61 AEYSMLPRATQVRNQREA 78


>gi|218509466|ref|ZP_03507344.1| ribonuclease PH [Rhizobium etli Brasil 5]
          Length = 60

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/60 (65%), Positives = 49/60 (81%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
          MR SGR+ +QMR++S  R  SK+AEGSCLVKFGDTH+L TA+LE+K P W+RNT  GW+T
Sbjct: 1  MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEDKTPPWLRNTAKGWVT 60


>gi|124027456|ref|YP_001012776.1| ribonuclease PH [Hyperthermus butylicus DSM 5456]
 gi|254782534|sp|A2BKC0|ECX1_HYPBU RecName: Full=Probable exosome complex exonuclease 1
 gi|123978150|gb|ABM80431.1| ribonuclease PH [Hyperthermus butylicus DSM 5456]
          Length = 255

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 113/243 (46%), Gaps = 29/243 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59
           +R  GR   Q+R I +   V   A+GS LV++G T ++       E  P  +       I
Sbjct: 24  IRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAII 83

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII-IDCDV 118
              Y M P ST  R K  A + R+     E+ ++I  AL +VV +S L  R  I +  +V
Sbjct: 84  RCRYHMAPFSTAER-KTPAPTRRE----VELSKVIREALEAVV-ISELYPRTAIDVYMEV 137

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +Q+DGGTRTAAIT A +AL D    M D              VA ++ G + G  ++D+D
Sbjct: 138 LQSDGGTRTAAITAASLALADAGIAMRDL-------------VAGVAVGKVDGVLVLDID 184

Query: 179 YGEDSTIDVDANFVMT---DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
             ED+  + D    M    D   ++++ G       + D F   L LA+  I  +  LQK
Sbjct: 185 EIEDNYAEADMPVAMAPSLDKVLLLQLNG-----VLTHDEFVKALELARKGIQVIYNLQK 239

Query: 236 DVI 238
           + +
Sbjct: 240 EAL 242


>gi|330952126|gb|EGH52386.1| ribonuclease PH [Pseudomonas syringae Cit 7]
          Length = 92

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 50/68 (73%)

Query: 2  RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
          R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 25 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 84

Query: 62 EYGMLPRS 69
          EYGMLPR+
Sbjct: 85 EYGMLPRA 92


>gi|218884635|ref|YP_002429017.1| Probable exosome complex exonuclease 1 [Desulfurococcus
           kamchatkensis 1221n]
 gi|218766251|gb|ACL11650.1| Probable exosome complex exonuclease 1 [Desulfurococcus
           kamchatkensis 1221n]
          Length = 242

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 23/240 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59
           +R+ GR+  ++R + +   V K A GS LV++G+T  L       E +P  I       +
Sbjct: 12  LRIDGRKPEELRPVRIALGVLKNANGSALVEYGNTKALAAVYGPREALPKHISLPDRAIL 71

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P ST  R K  A S R+     E+ ++I  AL SVV  S      I +  +++
Sbjct: 72  RVRYHMAPFSTTER-KSPAPSRRE----IELSKVIREALESVVFTSQFPRASIDVFIEIL 126

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTRT  +T A +AL D    M D              V  ++ G + G  ++D++ 
Sbjct: 127 QADGGTRTTGLTAASLALADAGIPMRDL-------------VIGVAVGKVDGVLVLDINE 173

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED   + D    +M ++G IV +Q +      +   F   L++A   +  + K  K+ +
Sbjct: 174 LEDEYGEADLPVGIMPNTGEIVLLQLN---GVLTSGEFKQALDMAYKGVEQIYKTAKEAM 230


>gi|218201746|gb|EEC84173.1| hypothetical protein OsI_30553 [Oryza sativa Indica Group]
 gi|222641142|gb|EEE69274.1| hypothetical protein OsJ_28540 [Oryza sativa Japonica Group]
          Length = 242

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 107/227 (47%), Gaps = 25/227 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGW 58
            R+ GR+ N+MR++     V   A+GS L + G+T ++       +V    +  N+K   
Sbjct: 10  FRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKDAL 69

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  EY M   STG+R +R+    R   RS EI  +I + + + +    +   QI I   V
Sbjct: 70  VRCEYRMADFSTGDR-RRKPKGDR---RSTEISLVIRQTMEASILTHLMPRSQIDIFVQV 125

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QADGGTR A I  A +AL D    M D              V + S G LC  P++DL+
Sbjct: 126 LQADGGTRAACINAATLALADAGIPMRDI-------------VTSCSAGYLCSTPLLDLN 172

Query: 179 YGEDST--IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           Y EDS    DV   F +T    +  +Q  A+      D F  +++LA
Sbjct: 173 YIEDSAGGPDVTVGF-LTKMDKVTLLQMDAK---LPMDTFETVMDLA 215


>gi|91772267|ref|YP_564959.1| exosome complex exonuclease Rrp41 [Methanococcoides burtonii DSM
           6242]
 gi|91711282|gb|ABE51209.1| Archaeal exosome complex RNA-binding protein [Methanococcoides
           burtonii DSM 6242]
          Length = 343

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 23/206 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +RL GR+ +++R +++   V   A+GSC +++G+  +L       ++ P  ++      +
Sbjct: 14  LRLDGRRVDEIRPMTVEMGVLSRADGSCYLEWGNNKVLAAVYGPRELHPRRLQRPSEALV 73

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGG--RSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
              Y M   S  +R+       R G   RS EI ++ G A  +VV         I +  +
Sbjct: 74  RYRYNMAAFSVEDRI-------RPGPSRRSTEISKVSGEAFETVVMKQFYPGAVIDVFAE 126

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+QAD GTRTAAI  A +AL D    M             KG VAA + G + G  ++DL
Sbjct: 127 VLQADAGTRTAAINAATLALVDAGIPM-------------KGLVAACAVGKVDGQLVIDL 173

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQ 203
           +  ED+  D D    MT+ G I  +Q
Sbjct: 174 NKPEDNYGDADLPIAMTEDGEITLLQ 199


>gi|40217446|emb|CAE46379.1| ribonuclease PH [uncultured archaeon]
 gi|268323829|emb|CBH37417.1| Probable exosome complex exonuclease 2 [uncultured archaeon]
          Length = 242

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 100/222 (45%), Gaps = 22/222 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           RLSGR   ++R I +   V K A+GSC  + GD   L       E  P   +N K   + 
Sbjct: 14  RLSGRGFEELRPIKIDVGVLKRADGSCYFELGDNKALAAVYGPREMHPRHFQNAKMAVVK 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S  +R KR     R    SQEI  +  +AL  V+         I +  +V+Q
Sbjct: 74  YRYNMAPFSVDDR-KRPGPDRR----SQEISMVSRKALDPVILRELYPKTAIEVYVEVLQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           +D GTRTA I  A VAL D    M D              V++++ G + G  ++DLD  
Sbjct: 129 SDAGTRTAGINAASVALADAGIPMRDL-------------VSSVAIGKIDGEVVLDLDAK 175

Query: 181 EDSTIDVDANFVM---TDSGHIVEVQGSAERATFSQDHFFAM 219
           ED+  + D    M   T++  ++++ G  ++  F +    AM
Sbjct: 176 EDNFGEADMPIAMIARTNTITLLQMDGRLKKEEFERGLKIAM 217


>gi|52550028|gb|AAU83877.1| ribonuclease PH [uncultured archaeon GZfos34H10]
          Length = 242

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 108/238 (45%), Gaps = 27/238 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           RLSGR   ++R I +   V K A+GSC  + G+  ++       E  P   +N K   + 
Sbjct: 14  RLSGRGFEELRPIKIEVGVLKRADGSCYFELGNNKVIAGVYGPREMHPRHFQNAKMAVVK 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S  +R KR     R    SQEI  +  +AL  V+         I +  +V+Q
Sbjct: 74  YRYNMAPFSVDDR-KRPGPDRR----SQEISMVSRKALDPVILRELYPKTAIEVYVEVLQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           +D GTRTA I  A VAL D    M D              V++++ G + G  ++DLD  
Sbjct: 129 SDAGTRTAGINAASVALADAGIPMRDL-------------VSSVAIGKIDGEVVLDLDAK 175

Query: 181 EDSTIDVDANFVM---TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           ED+  + D    M   T++  ++++ G  ++  F +      L LA D    + +LQK
Sbjct: 176 EDNFGEADMPIAMIARTNTITLLQMDGRLKKEEFERG-----LKLAMDGSRKIYELQK 228


>gi|52549121|gb|AAU82970.1| ribonuclease PH [uncultured archaeon GZfos24D9]
          Length = 242

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 100/222 (45%), Gaps = 22/222 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           RLSGR   ++R I +   + K A+GSC  + G+   L       E  P   +N K   + 
Sbjct: 14  RLSGRGFEELRPIKIEVGLLKRADGSCYFELGNNKALAAVYGPREMHPRHFQNAKRAVVK 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S  +R KR     R    SQEI  +  +AL  V+         I +  +V+Q
Sbjct: 74  YRYNMAPFSVDDR-KRPGPDRR----SQEISMVSRKALDPVILRELYPKTAIEVYVEVLQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           +D GTRTA I  A VAL D    M D              V++++ G + G  ++DLD  
Sbjct: 129 SDAGTRTAGINAASVALADAGIPMRDL-------------VSSVAIGKIDGEVVLDLDAK 175

Query: 181 EDSTIDVDANFVM---TDSGHIVEVQGSAERATFSQDHFFAM 219
           ED+  + D    M   T++  ++++ G  ++  F +    AM
Sbjct: 176 EDNFGEADVPIAMIARTNTITLLQMDGRLKKEEFERGLKLAM 217


>gi|212721602|ref|NP_001131612.1| RNase PH homolog [Zea mays]
 gi|194692034|gb|ACF80101.1| unknown [Zea mays]
          Length = 242

 Score = 79.0 bits (193), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 91/185 (49%), Gaps = 19/185 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGW 58
            R+ GR+ N+MR++     V   A+GS L + G+T ++       +V    +  N+K   
Sbjct: 10  FRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEAL 69

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  EY M   STG+R +R+    R   RS EI  +I + + + +    +   QI I   V
Sbjct: 70  VRCEYRMAEFSTGDR-RRKPKGDR---RSTEISLVIRQTMEASILTHLMPHSQIDIYVQV 125

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QADGGTR+A I  A +AL D    M D +              + S G LC  P++DL+
Sbjct: 126 LQADGGTRSACINAATLALADAGIPMRDIAT-------------SCSAGYLCSTPLLDLN 172

Query: 179 YGEDS 183
           Y EDS
Sbjct: 173 YLEDS 177


>gi|297527572|ref|YP_003669596.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM
           12710]
 gi|297256488|gb|ADI32697.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM
           12710]
          Length = 240

 Score = 79.0 bits (193), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 113/240 (47%), Gaps = 23/240 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +R  GR+ +++R I +   V K A+GS  V++G T ++       +V P  +       I
Sbjct: 12  LRHDGRRPDELRPIKMDVGVLKNADGSAYVEYGGTKIIAAVYGPREVYPRHLALPDRALI 71

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII-IDCDV 118
              Y M P ST +R K  A S R+     E+ ++I  AL S+V  S L  R  I +  +V
Sbjct: 72  RCRYHMAPFSTSDR-KSPAPSRRE----IELSKVIREALESLV-FSELYPRTTIDVFIEV 125

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QADGGTRT  +T A +AL D    M D              VA ++ G + G  ++D+D
Sbjct: 126 LQADGGTRTTGLTAASLALADAGIPMRDL-------------VAGVAAGKVDGVLVLDID 172

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             ED     +A+  +  +  I E+        F+ + F   LNLAK     + K+ K+ +
Sbjct: 173 EVEDEY--GEADMPIGYAAGIDEIVLLQLNGVFTVEEFKEALNLAKRGAEQIYKIMKETL 230


>gi|296243060|ref|YP_003650547.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera
           aggregans DSM 11486]
 gi|296095644|gb|ADG91595.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera
           aggregans DSM 11486]
          Length = 249

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 109/239 (45%), Gaps = 23/239 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           RL GR+ +++R + +   V K A GS LV++G T +L       E +P  I       + 
Sbjct: 20  RLDGRRLDELRPVKIKVGVLKNANGSALVEYGGTKVLAAVFGPREALPRHIALPDRATLR 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST  R K  A S R+     E+ ++I  AL SVV         I I  +V+Q
Sbjct: 80  VRYHMAPFSTSER-KSPAPSRRE----IELSKVIREALESVVFSEQFPRTSIDIFIEVLQ 134

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA +T A VAL D    M+D              V  ++ G + G  ++D+   
Sbjct: 135 ADGGTRTAGLTAASVALADAGIPMKDL-------------VIGVAVGKIEGNLVLDISEL 181

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           ED   + D    +  + G IV +Q +      + +   A + LA   +  + K+ K+ +
Sbjct: 182 EDEYGEADLPLGIAPNIGEIVLLQLN---GVLTPEELKAGIELAWKGVDSIYKIAKEAL 237


>gi|195622232|gb|ACG32946.1| exosome complex exonuclease RRP41 [Zea mays]
          Length = 242

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 91/185 (49%), Gaps = 19/185 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGW 58
            R+ GR+ N+MR++     V   A+GS L + G+T ++       +V    +  N+K   
Sbjct: 10  FRVDGRRPNEMRQLKGEVGVVVRADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEAL 69

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  EY M   STG+R +R+    R   RS EI  +I + + + +    +   QI I   V
Sbjct: 70  VRCEYRMAEFSTGDR-RRKPKGDR---RSTEISLVIRQTMEASILTHLMPHSQIDIYVQV 125

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QADGGTR+A I  A +AL D    M D +              + S G LC  P++DL+
Sbjct: 126 LQADGGTRSACINAATLALADAGIPMRDIAT-------------SCSAGYLCSTPLLDLN 172

Query: 179 YGEDS 183
           Y EDS
Sbjct: 173 YLEDS 177


>gi|52548652|gb|AAU82501.1| ribonuclease PH [uncultured archaeon GZfos18B6]
          Length = 242

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 22/222 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           RLSGR   ++R I +   V K A+GSC  + G+   +       E  P   +N K   + 
Sbjct: 14  RLSGRGFEELRPIKIDVGVLKRADGSCYFELGNNKAIAAVYGPREMHPRHFQNAKMAVVK 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S  +R KR     R    SQEI  +  +AL  V+         I +  +V+Q
Sbjct: 74  YRYNMAPFSVDDR-KRPGPDRR----SQEISMVSRKALDPVILRELYPKTAIEVYVEVLQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           +D GTRTA I  A VAL D    M+D              V++++ G + G  ++DLD  
Sbjct: 129 SDAGTRTAGINAASVALADAGIPMKDL-------------VSSVAIGKIDGEVVLDLDAK 175

Query: 181 EDSTIDVDANFVM---TDSGHIVEVQGSAERATFSQDHFFAM 219
           ED+  + D    M   T++  ++++ G  ++  F +    AM
Sbjct: 176 EDNFGEADMPIAMVARTNTITLLQMDGRLKKEEFERGLQLAM 217


>gi|48477466|ref|YP_023172.1| exosome complex exonuclease Rrp41 [Picrophilus torridus DSM 9790]
 gi|48430114|gb|AAT42979.1| ribonuclease PH [Picrophilus torridus DSM 9790]
          Length = 239

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 93/204 (45%), Gaps = 19/204 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR  N+MR I +T  V   A+GS  +++G   ++    + E  P   +N     + 
Sbjct: 12  LRLDGRAFNEMRPIRITTGVVDNADGSAYIEWGANKIVVAVYVREAYPKHAQNIDKAIVK 71

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           A Y M   S   R KR         R+ EI ++I  AL S + +  L   +I +  +V++
Sbjct: 72  ARYNMAGFSVEER-KRPG----PDRRTMEISKLISEALESAIMVERLPRAEIDVYIEVLE 126

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A++T A VA+ D    M+D                  + G   G  ++DL   
Sbjct: 127 ADAGTRIASLTAASVAVADAGIPMKDLP-------------VGCTAGKANGKVVLDLSKD 173

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQ 203
           ED+  D D    ++  SG I+ +Q
Sbjct: 174 EDNYGDADIPMAILPKSGKIILLQ 197


>gi|242088177|ref|XP_002439921.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor]
 gi|241945206|gb|EES18351.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor]
          Length = 242

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 90/185 (48%), Gaps = 19/185 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGW 58
            R+ GR+ N+MR++     V   A+GS L + G+T ++       +V    +  N+    
Sbjct: 10  FRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSNEAL 69

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  EY M   STG+R +R+    R   RS EI  +I + + + +    +   QI I   V
Sbjct: 70  VRCEYRMAEFSTGDR-RRKPKGDR---RSTEISLVIRQTMEASILTHLMPRSQIDIYVQV 125

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QADGGTR+A I  A +AL D    M D              V + S G LC  P++DL+
Sbjct: 126 LQADGGTRSACINAATLALADAGIPMRDI-------------VTSCSAGYLCSTPLLDLN 172

Query: 179 YGEDS 183
           Y EDS
Sbjct: 173 YLEDS 177


>gi|325969194|ref|YP_004245386.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28]
 gi|323708397|gb|ADY01884.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28]
          Length = 246

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 103/242 (42%), Gaps = 22/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWIT 60
           R  GR  N+ R + +   V   AEGS LV +G+T +L       +VP   +       + 
Sbjct: 15  RSDGRLPNEHRPVRMEVGVISNAEGSALVAYGNTVILAAVYGPREVPQKHLELPDKAILR 74

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M+P ST    K    S R+     EI ++I  AL  VV L       I +  +V+Q
Sbjct: 75  VRYHMIPFSTSEGRKSPTPSRRE----IEISKVIRTALEPVVILERFPRTTIDVYIEVLQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG TR   IT A +AL D    M D              +  +S G + G  IVDL+  
Sbjct: 131 ADGSTRVTGITAASLALADAGIPMRDL-------------LVGVSVGKVSGTIIVDLNQL 177

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED   + D    +M   G I  +Q   E   ++       + LA      + +LQKDV+ 
Sbjct: 178 EDQYGEGDMPLAIMYGRGLITLMQADGE---WTPTEVNQAVELAFKAAEQIYRLQKDVLK 234

Query: 240 NE 241
           N+
Sbjct: 235 NK 236


>gi|146302862|ref|YP_001190178.1| exosome complex exonuclease Rrp41 [Metallosphaera sedula DSM 5348]
 gi|145701112|gb|ABP94254.1| ribosomal RNA-processing protein RRP41/SKI6 [Metallosphaera sedula
           DSM 5348]
          Length = 245

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 111/242 (45%), Gaps = 23/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           RL GR+ +++R + +   V K A+GS LV+ G+T ++       E  P  +       + 
Sbjct: 16  RLDGRRPDELRPMKMEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRATLR 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST  R  +  V  R   R  E+ ++I  AL S + +       I +  +VIQ
Sbjct: 76  VRYHMTPFSTDER--KSPVPSR---REIELSKVIREALESSILVEQFPRSSIDVFMEVIQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A++  A +A+ D    ++D              +AA++ G   G  ++DL+  
Sbjct: 131 ADAGTRLASLMAASLAVVDAGIPVKDV-------------IAAVAVGKADGVVVLDLNEP 177

Query: 181 EDSTIDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED   + D    M  S G I  +Q +      +Q  F   L LA   I+ +  L+K+V+ 
Sbjct: 178 EDMWGEADMPVAMLPSLGQITLIQLN---GNMTQQEFKQGLELAYKGISTIYNLEKEVLR 234

Query: 240 NE 241
           N+
Sbjct: 235 NK 236


>gi|242091341|ref|XP_002441503.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor]
 gi|241946788|gb|EES19933.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor]
          Length = 242

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 90/185 (48%), Gaps = 19/185 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGW 58
            R+ GR+ N+MR++     +   A+GS L + G+T ++       +V    +  N+    
Sbjct: 10  FRVDGRRPNEMRQLKGEVGIVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSNEAL 69

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  EY M   STG+R +R+    R   RS EI  +I + + + +    +   QI I   V
Sbjct: 70  VRCEYRMAEFSTGDR-RRKPKGDR---RSTEISLVIRQTMEASILTHLMPHSQIDIYVQV 125

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QADGGTR+A I  A +AL D    M D              V + S G LC  P++DL+
Sbjct: 126 LQADGGTRSACINAATLALADAGIPMRDI-------------VTSCSAGYLCSTPLLDLN 172

Query: 179 YGEDS 183
           Y EDS
Sbjct: 173 YLEDS 177


>gi|13541138|ref|NP_110826.1| exosome complex exonuclease Rrp41 [Thermoplasma volcanium GSS1]
 gi|29336899|sp|Q97BZ5|ECX1_THEVO RecName: Full=Probable exosome complex exonuclease 1
 gi|14324525|dbj|BAB59452.1| ribonuclease PH [Thermoplasma volcanium GSS1]
          Length = 248

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 111/243 (45%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59
           +RL GR  N++R I +   V   A+GS  +++G   ++      +E  P   ++  H  +
Sbjct: 17  LRLDGRSFNELRPIKIEAGVLNRADGSAYIEWGGNKIIVGVYGPKEAYPKHSQDIDHAVV 76

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
            A Y M   S   R KR     R    + EI ++I  AL S + +      +I +  +V+
Sbjct: 77  KARYNMAAFSVDER-KRPGPDRR----TMEISKVISEALSSSIMIEQFPRAEIDVYIEVL 131

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QAD GTR A +T A VAL D    M D              V   + G + G+ ++DL  
Sbjct: 132 QADAGTRIAGLTAATVALADAGIPMRDM-------------VVGCTAGKVDGHIVLDLSK 178

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED+  + D    +M  +G IV +Q   +    ++D F+   ++  +    + ++Q++ +
Sbjct: 179 EEDNFGEADIPMAIMPKTGEIVLLQMDGD---VTEDEFYEATSMIIEATKKISQIQRNAL 235

Query: 239 SNE 241
            N+
Sbjct: 236 LNK 238


>gi|218679365|ref|ZP_03527262.1| ribonuclease PH [Rhizobium etli CIAT 894]
          Length = 71

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/67 (50%), Positives = 51/67 (76%)

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           P++DLDY EDS+ + DANFVMT +G IVE+QG+AE   F+++ F +++ LAK+ I +L+ 
Sbjct: 4   PVIDLDYLEDSSAETDANFVMTGAGGIVEIQGTAEGTPFTEEEFSSLMGLAKNGIGELVA 63

Query: 233 LQKDVIS 239
           LQK  I+
Sbjct: 64  LQKQAIA 70


>gi|126465758|ref|YP_001040867.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus
           marinus F1]
 gi|126014581|gb|ABN69959.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus
           marinus F1]
          Length = 240

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 106/226 (46%), Gaps = 23/226 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +R  GR+ N++R I +   V K A+GS  V++G T ++       +V P  +       I
Sbjct: 12  LRHDGRKPNELRPIKMDVGVLKNADGSAYVEYGGTKVIAAVYGPREVYPRHLALPDRALI 71

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII-IDCDV 118
              Y M P ST +R K  A S R+     E+ ++I  AL S+V  S L  R  I +  +V
Sbjct: 72  RCRYHMAPFSTSDR-KSPAPSRRE----IELSKVIREALESLV-FSELYPRTTIDVFIEV 125

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QADGGTRT  +T A +AL D    M D              VA ++ G + G  ++D+D
Sbjct: 126 LQADGGTRTTGLTAASLALADAGIPMRDL-------------VAGVAVGKVDGVLVLDID 172

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
             ED     +A+  +  +  I E+         + + F   LNLAK
Sbjct: 173 EVEDEY--GEADMPIGYAAGIDEIVLLQLNGVLTVEEFREALNLAK 216


>gi|255022817|ref|ZP_05294803.1| ribonuclease PH [Listeria monocytogenes FSL J1-208]
          Length = 119

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 71/116 (61%), Gaps = 7/116 (6%)

Query: 130 ITGAWVALHDCLQHMEDCSN--KFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDSTID 186
           +TGA++A+   +  +++     KF +    K  +AA S G+L  G  ++DL+Y EDS   
Sbjct: 1   MTGAFIAMVMAIAKLDEAVPFAKFPV----KDFLAATSVGVLEEGGTVLDLNYVEDSAAQ 56

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           VD N +MT SG  VE+QG+ E ATFS+     ++ L K  I++LI++QK+ + ++V
Sbjct: 57  VDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLGDKV 112


>gi|255644780|gb|ACU22892.1| unknown [Glycine max]
          Length = 190

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 89/186 (47%), Gaps = 22/186 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN---TKHG 57
           +RL GR+  +MR+I         A+GS + + G+T ++       +V    RN   + H 
Sbjct: 9   LRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREV--QNRNQQISSHA 66

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +  EY M   STG+R+++     +   RS EI  +I + + + +    L   QI I   
Sbjct: 67  LVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLLPRSQIDIYVQ 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+QADGGTR+A I  A +AL D    M D              V + S G L   P++DL
Sbjct: 123 VLQADGGTRSACINAATLALADAGIPMRDL-------------VTSCSAGYLNSTPLLDL 169

Query: 178 DYGEDS 183
           +Y EDS
Sbjct: 170 NYVEDS 175


>gi|116754659|ref|YP_843777.1| exosome complex exonuclease Rrp41 [Methanosaeta thermophila PT]
 gi|116666110|gb|ABK15137.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosaeta
           thermophila PT]
          Length = 245

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 106/239 (44%), Gaps = 22/239 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +RL GR+ +++R I +   V K A+GSC ++ GD  ++       +V P  ++      I
Sbjct: 11  IRLDGRRFDELRPIKMEVGVLKRADGSCYMEMGDNKVIAAVYGPREVHPRHLQEVNRAII 70

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M   S   R  R     R   RS E+ ++   AL  V+  S      I I  +V+
Sbjct: 71  RYRYNMASFSVEER--RRPGPDR---RSYELSKVSREALEPVILTSYFPKSVIDIFVEVL 125

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QAD GTRTA I  A VAL D    M             +  V++ + G + G  ++D   
Sbjct: 126 QADAGTRTAGINAASVALADAGIPM-------------RSLVSSCAAGKVDGQIVLDPMK 172

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED+    D    +T +G I  +Q        ++D F   + LAK    ++ K+Q+ V+
Sbjct: 173 DEDNFGQADMPIAITPTGEITLLQMD---GILTRDEFRQAMELAKKGCQEIYKIQRRVL 228


>gi|330835837|ref|YP_004410565.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera cuprina
           Ar-4]
 gi|329567976|gb|AEB96081.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera cuprina
           Ar-4]
          Length = 283

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 102/232 (43%), Gaps = 31/232 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ N  R +S+T   +K A+GS LVK GDT +L    +EE  P +      G +  
Sbjct: 28  RNDGRKFNDYRPLSITLGYAKKADGSALVKLGDTTVLAGVKIEEDEP-YSDTPNQGNLVV 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +LP +           G     + E+ R++ R+LR    VDLSAL    G R   + 
Sbjct: 87  NAELLPLAY-----ETFEPGPPDENAIELSRVVDRSLRDSKAVDLSALVIEPGKRVWTVW 141

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC-LQHM-----------EDCSNKFQLSQVLKGHV 161
           +D  V+   G    A    A  AL+D  L  +           ED +  F     ++  V
Sbjct: 142 VDISVLDYGGNILDACTLSAVAALYDTKLPRIVNDNGTINIVKEDKTTPFP----IRYPV 197

Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
           A ++   L  + +VD D  E+  +D   +F     GHIV +Q S E  +FSQ
Sbjct: 198 ATVTIAKLGKFLVVDPDLEEEGIMDAKISFSYIPDGHIVGIQKSGE-GSFSQ 248


>gi|297821020|ref|XP_002878393.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297324231|gb|EFH54652.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 241

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 109/237 (45%), Gaps = 25/237 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK--HGW 58
           +RL GR+ N+MR+I     V   A+GS + + G+T ++       ++    +  K  H  
Sbjct: 9   LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAV 68

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  EY M   STG+R ++     +   RS E+  +I + + + +    +   QI I   V
Sbjct: 69  VLCEYSMAQFSTGDRRRQ-----KFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQV 123

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC--GMLCGYPIVD 176
           +QADGGTR+A I  A +AL D    M D                A+SC  G L   P++D
Sbjct: 124 LQADGGTRSACINAATLALADAGIPMRDL---------------AVSCSAGYLNSTPLLD 168

Query: 177 LDYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           L+Y EDS    D    ++     +  +Q  A+    + +  FA+ +     IA+ I+
Sbjct: 169 LNYVEDSAGGADVTVGILPKLDKVTLLQMDAKLPMETFETVFALASEGCKAIAERIR 225


>gi|16082286|ref|NP_394747.1| exosome complex exonuclease Rrp41 [Thermoplasma acidophilum DSM
           1728]
 gi|29336949|sp|Q9HIP2|ECX1_THEAC RecName: Full=Probable exosome complex exonuclease 1
 gi|10640637|emb|CAC12415.1| RNase PH (yeast SIK6) related protein [Thermoplasma acidophilum]
          Length = 248

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 111/243 (45%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59
           +RL GR  N++R I +   V   A+GS  +++G   ++      +E  P   ++  H  +
Sbjct: 17  LRLDGRSFNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGVYGPKEAYPKHSQDIDHAIV 76

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
            A Y M   S   R KR     R    + EI ++I  AL S + +      +I +  +V+
Sbjct: 77  KARYNMAAFSVDER-KRPGPDRR----TMEISKVISEALSSSIMIEQFPRAEIDVYIEVL 131

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QAD GTR A +T A VAL D    M D              V   + G + G+ ++DL  
Sbjct: 132 QADAGTRIAGLTAATVALADAGVPMRDM-------------VVGCTAGKVDGHMVLDLSK 178

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED+  + D    +M  +G IV +Q   +    ++D  +  +++  +    + ++Q++ +
Sbjct: 179 EEDNYGEADIPIAIMPKTGDIVLMQMDGD---VTEDELYQAMDMIFEATKRISQIQREAL 235

Query: 239 SNE 241
            N+
Sbjct: 236 LNK 238


>gi|15233167|ref|NP_191721.1| RRP41; 3'-5'-exoribonuclease/ RNA binding [Arabidopsis thaliana]
 gi|186511299|ref|NP_001118878.1| RRP41; 3'-5'-exoribonuclease/ RNA binding [Arabidopsis thaliana]
 gi|6164938|gb|AAF04590.1|AF191741_1 exonuclease RRP41 [Arabidopsis thaliana]
 gi|6850853|emb|CAB71092.1| exonuclease RRP41 [Arabidopsis thaliana]
 gi|26452705|dbj|BAC43435.1| putative exonuclease RRP41 [Arabidopsis thaliana]
 gi|28973161|gb|AAO63905.1| putative exonuclease RRP41 [Arabidopsis thaliana]
 gi|332646711|gb|AEE80232.1| exosome complex component RRP41 [Arabidopsis thaliana]
 gi|332646712|gb|AEE80233.1| exosome complex component RRP41 [Arabidopsis thaliana]
          Length = 241

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 24/187 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK--HGW 58
           +RL GR+ N+MR+I     V   A+GS + + G+T ++       ++    +  K  H  
Sbjct: 9   LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAV 68

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  EY M   STG+R ++     +   RS E+  +I + + + +    +   QI I   V
Sbjct: 69  VLCEYSMAQFSTGDRRRQ-----KFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQV 123

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC--GMLCGYPIVD 176
           +QADGGTR+A I  A +AL D    M D                A+SC  G L   P++D
Sbjct: 124 LQADGGTRSACINAATLALADAGIPMRDL---------------AVSCSAGYLNSTPLLD 168

Query: 177 LDYGEDS 183
           L+Y EDS
Sbjct: 169 LNYVEDS 175


>gi|218662070|ref|ZP_03518000.1| ribonuclease PH [Rhizobium etli IE4771]
          Length = 75

 Score = 74.7 bits (182), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 42/57 (73%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG 57
          MR SGR+ +QMR++S  R  SK+AEGSCLVKFGDTH+L TA+LEEK P      + G
Sbjct: 17 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPAVAAQYRQG 73


>gi|282165297|ref|YP_003357682.1| putative exosome complex exonuclease 1 [Methanocella paludicola
           SANAE]
 gi|282157611|dbj|BAI62699.1| putative exosome complex exonuclease 1 [Methanocella paludicola
           SANAE]
          Length = 254

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 104/239 (43%), Gaps = 24/239 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           RL GR  N++R I     V K A+GSC ++FG   ++       +V P  ++N     + 
Sbjct: 13  RLDGRGPNELRPIKFKAGVLKRADGSCYLEFGGNKVMAAVYGPREVHPRHLQNASRAIVR 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII-IDCDVI 119
             Y M   S   R KR     R    S EI ++   AL SVV L  L  R  + I  +++
Sbjct: 73  YRYNMAAFSVEER-KRPGPDRR----SIEISKVSREALESVV-LEELYPRSAVDIFVEIL 126

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QAD GTR A I  A VAL D    M             +  V+A S G + G  ++DL+ 
Sbjct: 127 QADAGTRVAGINAASVALADAGIPM-------------RCLVSACSVGKIDGEVVLDLNK 173

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED+    D    +   G +   Q        +++ F   L++A D    L ++QK  +
Sbjct: 174 DEDNYGQADLPVAVNQFGEVTLCQMDGH---LTEEEFGKALDMAVDGCKKLHEMQKQAL 229


>gi|294495471|ref|YP_003541964.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus
           mahii DSM 5219]
 gi|292666470|gb|ADE36319.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus
           mahii DSM 5219]
          Length = 297

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 108/241 (44%), Gaps = 26/241 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +RL GR+ +++R + +   V   A+GSC +++G+  +L       ++ P  ++      +
Sbjct: 14  LRLDGRRVDEIRPMKVEMGVLSRADGSCYLEWGNNKVLAAVYGPRELHPRRMQKPNEVLV 73

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGG--RSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
             +Y M   S  +R+       R G   RS EI ++ G A   VV         I +  +
Sbjct: 74  RYKYNMASFSVEDRI-------RPGPSRRSTEISKVSGEAFEPVVMTQYYPGAVIDVFAE 126

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+QAD GTRTAAI  A +AL D    M             KG V+A + G + G  ++DL
Sbjct: 127 VLQADAGTRTAAINAATLALADAGIPM-------------KGLVSACAVGKVDGQLVLDL 173

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +  ED+    D    MT  G I  +Q        + +     L + K     +I++Q++ 
Sbjct: 174 NKPEDNYGQADLPVAMTQDGEITLLQMDGH---LTPEELEEGLEMVKKGCQQIIEIQREA 230

Query: 238 I 238
           +
Sbjct: 231 L 231


>gi|327310389|ref|YP_004337286.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20]
 gi|326946868|gb|AEA11974.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20]
          Length = 245

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 102/224 (45%), Gaps = 22/224 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           R  GR  +QMRE+ ++  V   A+GS +V +G+T  +       E  P  +       + 
Sbjct: 14  RADGRTPDQMREVKISVGVISNADGSAMVSYGNTTAVAAVYGPREMHPRHLSLPDRAVMR 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST +  K  A S R+     EI +++  AL   + L      +I +  +++Q
Sbjct: 74  VRYHMAPFSTRDERKNPAPSRRE----IEISKVLREALEPAIFLEQFPRSRIDVFVEIVQ 129

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG TR A++T A +AL D    M D              V  +S G++ G  ++DL+  
Sbjct: 130 ADGSTRVASLTAASLALADAGVPMRDL-------------VIGVSVGLVNGTVVLDLNGL 176

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           ED+  + D     M + G I  +Q      ++S+D F   L LA
Sbjct: 177 EDNYGEGDMPVGYMPNLGRITLLQLD---GSWSRDKFAEALKLA 217


>gi|257076444|ref|ZP_05570805.1| exosome complex exonuclease Rrp41 [Ferroplasma acidarmanus fer1]
          Length = 240

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 108/239 (45%), Gaps = 22/239 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR  N+MR I +   V + A+GS  +++G   ++    + E  P   +N     + 
Sbjct: 13  LRLDGRSLNEMRPIKIQTGVVERADGSAFIEWGANKIIVAVYVREAYPKHAQNIDRAIVK 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           A Y M    +G  V+     G    R+ EI +++  AL S + L  L   +I +   V++
Sbjct: 73  ARYNM----SGYSVEERKRPG-PDRRTMEISKVVSEALSSAIVLEKLPRAEIDVFIQVLE 127

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A++T + VA+ D    M D              V   + G   G  ++DL   
Sbjct: 128 ADAGTRIASLTASSVAVADAGVPMRDL-------------VVGCTAGKADGKIVLDLSKD 174

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           ED+    D    ++  +G +V +Q   +    +++ F    ++  D +  + +LQ++ +
Sbjct: 175 EDNFGQADIPMAILPRTGKVVLLQLDGD---VTEEEFNEATSMMMDAMPRISELQRNAL 230


>gi|320101499|ref|YP_004177091.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus
           mucosus DSM 2162]
 gi|319753851|gb|ADV65609.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus
           mucosus DSM 2162]
          Length = 243

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 76/148 (51%), Gaps = 6/148 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59
           +R+ GR+ +++R + +   V K A GS LV++G+T  L       E +P  I       +
Sbjct: 13  LRVDGRRPDELRPVRIAIGVLKNANGSALVEYGNTKALAAVYGPREAMPKHISLPDRAVL 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P ST  R K  A S R+     E+ ++I  AL SVV  +      I +  +++
Sbjct: 73  RVRYHMAPFSTSER-KSPAPSRRE----IELSKVIREALESVVFTTQYPRASIDVFIEIL 127

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDC 147
           QADGGTRTA +T A +AL D    M+D 
Sbjct: 128 QADGGTRTAGLTAASLALADAGIPMKDL 155


>gi|161527940|ref|YP_001581766.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1]
 gi|259645400|sp|A9A5C9|ECX1_NITMS RecName: Full=Probable exosome complex exonuclease 1
 gi|160339241|gb|ABX12328.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1]
          Length = 244

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 84/182 (46%), Gaps = 19/182 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           R  GR  ++ R I +     K A+GS  ++FGD  +L        V P  + +T  G + 
Sbjct: 17  RCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHMSDTDTGILR 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S G R K  A S R+     EI ++I  AL   V L       + +  +V+Q
Sbjct: 77  VRYHMEPFSVGER-KNPAPSRRE----IEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQ 131

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR AA+T A VAL D    M D              VAAI+ G +    I+D++  
Sbjct: 132 ADGGTRCAALTAASVALADAGIPMRDM-------------VAAIAAGKVADTVILDVNNE 178

Query: 181 ED 182
           ED
Sbjct: 179 ED 180


>gi|213854708|ref|ZP_03382948.1| defective ribonuclease PH [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 80

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 55/82 (67%), Gaps = 2/82 (2%)

Query: 107 LGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC 166
           +G   I +DCDV+QADGGTRTA+ITGA VAL D LQ + +  N    +  +KG VAA+S 
Sbjct: 1   MGEFTITLDCDVLQADGGTRTASITGACVALVDALQKLVE--NGKLKTNPMKGMVAAVSV 58

Query: 167 GMLCGYPIVDLDYGEDSTIDVD 188
           G++ G  + DL+Y EDS  + D
Sbjct: 59  GIVNGEAVCDLEYVEDSAAETD 80


>gi|159040754|ref|YP_001540006.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167]
 gi|157919589|gb|ABW01016.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167]
          Length = 242

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 87/188 (46%), Gaps = 19/188 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           R+ GR   + R +++   V   A GS LV +G+T +L       E +P +I       + 
Sbjct: 15  RVDGRLPEEHRPVTMQVGVLPNANGSALVAYGNTVVLAAVYGPREPIPRYITVPDKAVVR 74

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST +R K  A + R+     EI +++ +AL +VV L       I +  +V+Q
Sbjct: 75  VRYHMAPFSTDDR-KNPAPTRRE----IEISKVVKQALETVVFLEQYPKSTIDVFLEVLQ 129

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG TR  +IT A +AL D    M D              V  +S G +    IVDL+  
Sbjct: 130 ADGSTRVTSITAASLALADAGIPMRDL-------------VVGVSVGKINDTVIVDLNKL 176

Query: 181 EDSTIDVD 188
           ED+  D D
Sbjct: 177 EDNYGDGD 184


>gi|330835838|ref|YP_004410566.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
 gi|329567977|gb|AEB96082.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
          Length = 245

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 23/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           RL GR+ +++R + +   V K A+GS LV+ G+T ++       E  P  +       + 
Sbjct: 16  RLDGRRPDELRPMKMEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRATLR 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST  R  +  V  R   R  E+ ++I  AL S V +       I +  +VIQ
Sbjct: 76  VRYHMTPFSTDER--KSPVPSR---REIELSKVIREALESSVLVEQFPRSSIDVFMEVIQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A++  A +A+ D    + D              +AA++ G   G  ++DL+  
Sbjct: 131 ADAGTRLASLMAASLAIIDAGIPVRDA-------------IAAVAVGKADGVVVLDLNEP 177

Query: 181 EDSTIDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED   + D    M  S G I  +Q +      + + F   L+LA   I  +  ++K+V+ 
Sbjct: 178 EDMWGEADMPVAMMPSLGQITLIQLNGH---MTPEEFKQGLDLAYKGINTIYSMEKEVLK 234

Query: 240 NE 241
           ++
Sbjct: 235 SK 236


>gi|119872348|ref|YP_930355.1| exosome complex exonuclease Rrp41 [Pyrobaculum islandicum DSM 4184]
 gi|254782537|sp|A1RST0|ECX1_PYRIL RecName: Full=Probable exosome complex exonuclease 1
 gi|119673756|gb|ABL88012.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum islandicum
           DSM 4184]
          Length = 246

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 104/230 (45%), Gaps = 32/230 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59
           +R  GR  +QMRE+++T  +   A+GS +V +G T  +       E  P  +     G +
Sbjct: 13  VRADGRAPDQMREVNITVGIVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P ST    K E  S     R  EI +++  AL   V L      +I +  +++
Sbjct: 73  RVRYHMAPFST----KDERKSPTPTRREIEISKILREALEPAVVLEQYPRSRIDVFIEIL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD- 178
           QADG TR A++T A +AL D   +M D              V  +S G++ G  ++DL+ 
Sbjct: 129 QADGSTRVASLTAASLALADAGVYMRDL-------------VIGVSVGLVDGAVVLDLNG 175

Query: 179 ----YGE-DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
               YGE D  +    N        ++++ G+     +++D F   LNLA
Sbjct: 176 LEDQYGEGDLPVGYMPNL---KRFTLLQLDGA-----WTRDKFLEALNLA 217


>gi|307594960|ref|YP_003901277.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429]
 gi|307550161|gb|ADN50226.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429]
          Length = 246

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 102/241 (42%), Gaps = 22/241 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWIT 60
           R  GR  N+ R + +   V K AEGS LV +G+T +L       +VP   +       + 
Sbjct: 15  RSDGRLPNEHRPVRMEVGVIKNAEGSALVAYGNTVILAAVYGPREVPQKHLELPDKAILR 74

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST    K    S R+     EI ++I  AL  VV L       I +  +V+Q
Sbjct: 75  VRYHMAPFSTSEGRKSPTPSRRE----IEISKVIRTALEPVVILERFPRTTIDVYIEVLQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG TR   IT A +AL D    M D              +  +S G + G  +VDL+  
Sbjct: 131 ADGSTRVTGITAASLALADAGIPMRDL-------------LVGVSIGKVSGTIVVDLNQL 177

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED   + D    +M   G I  +Q   E   ++       L+LA      + +L+K+ + 
Sbjct: 178 EDQYGEGDMPLAIMYGRGLITLMQADGE---WTPTEVNQALDLAFKAAEQIYRLEKETLK 234

Query: 240 N 240
           +
Sbjct: 235 S 235


>gi|290989317|ref|XP_002677284.1| predicted protein [Naegleria gruberi]
 gi|284090891|gb|EFC44540.1| predicted protein [Naegleria gruberi]
          Length = 248

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 86/184 (46%), Gaps = 20/184 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA--TLEEKVPMWIRNTKHGW 58
           +R+ GR+ +++R I     +   A+GS   + G+T +L       E K    ++N +   
Sbjct: 13  LRVDGRRSHEIRNIKFKLNLFSRADGSAYYEQGNTRVLAAVYGPREVKNKSQMKNDR-AI 71

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           I  EY M   STG R KR+    R   RS EI  +I +   SV+        QI I   V
Sbjct: 72  INCEYSMATFSTGER-KRQFKKDR---RSTEISVVIRQTFESVILTHLYPRTQIDIFMQV 127

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QADGGTR A I  A +AL D    M+D              V + + G + G P+ DL+
Sbjct: 128 LQADGGTRCACINAATLALLDAGIPMKD-------------FVVSCAAGFIQGSPLTDLN 174

Query: 179 YGED 182
           Y ED
Sbjct: 175 YIED 178


>gi|52352385|gb|AAU43674.1| ribonuclease PH [uncultured archaeon GZfos26D8]
          Length = 247

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 22/222 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           RL GR  +++R I +   V K A+GSC ++ GD  ++       E  P   ++ K   + 
Sbjct: 13  RLDGRGFDELRPIKIEVGVLKRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMAVVK 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST +R KR     R    S EI ++   A   V+         I +  +++Q
Sbjct: 73  FRYNMAPFSTDDR-KRPGPDRR----SVEISKVCREAFDPVIMRELYPKTGIEVYVELLQ 127

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           +D GTRTA I  A +AL D    M+D              V++I+ G + G  ++DL+  
Sbjct: 128 SDAGTRTAGINAASIALADAGIPMKDL-------------VSSIAVGKIGGEMVLDLNAA 174

Query: 181 EDSTIDVDANFVM---TDSGHIVEVQGSAERATFSQDHFFAM 219
           ED+  + D    M   T++   +++ G   +  F +    AM
Sbjct: 175 EDNNGEADMPIAMIARTNTITALQMDGRLTKEEFGRGLKLAM 216


>gi|224130470|ref|XP_002320845.1| predicted protein [Populus trichocarpa]
 gi|118489833|gb|ABK96716.1| unknown [Populus trichocarpa x Populus deltoides]
 gi|222861618|gb|EEE99160.1| predicted protein [Populus trichocarpa]
          Length = 241

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 88/188 (46%), Gaps = 26/188 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----TK 55
           +RL GR+  +MR++         A+GS + + G+T ++         P  ++N       
Sbjct: 9   LRLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVY----GPREVQNRSQQIND 64

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
              +  EY M   STG+R +R+    R   RS EI  +I +A+   +  + +   QI I 
Sbjct: 65  QALVRCEYSMANFSTGDR-RRKPKGDR---RSTEISLVIRQAMEECILTNLMPRSQIDIY 120

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
             V+QADGGTR+A I  A +AL D    M D              V + S G L   P++
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDL-------------VTSCSAGFLNSTPLL 167

Query: 176 DLDYGEDS 183
           DL+Y EDS
Sbjct: 168 DLNYVEDS 175


>gi|291533814|emb|CBL06927.1| RNase PH [Megamonas hypermegale ART12/1]
          Length = 91

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 52/83 (62%), Gaps = 1/83 (1%)

Query: 161 VAAISCGMLC-GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
           +AAIS G+     PI+DL Y EDST   D N VMT  GH VE+QG+ E+  F+ + F  M
Sbjct: 1   MAAISVGISKDNEPILDLCYEEDSTAIADMNIVMTGEGHFVEIQGTGEKQPFTHEQFSKM 60

Query: 220 LNLAKDRIADLIKLQKDVISNEV 242
           L  A+  I +LI  QKD++ N++
Sbjct: 61  LAYAQKGIDELISYQKDILGNDL 83


>gi|305663898|ref|YP_003860186.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans
           DSM 17230]
 gi|304378467|gb|ADM28306.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans
           DSM 17230]
          Length = 242

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 103/239 (43%), Gaps = 22/239 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           R  GR+   +R I +   V K A+GS +V+ G T +L       E VP          I 
Sbjct: 14  RHDGRRPEDLRPIRMEVGVLKNADGSAIVEIGKTVVLAAVYGPREVVPRHEEIVDRAVIR 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y ML  ST    K  A S R+     E+ ++I  AL   +  S      I I  +VI 
Sbjct: 74  CRYRMLSFSTLGERKSPAPSRRE----IELSKVIREALEPAIISSMYPRTAIDIFVEVIN 129

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           A+GGTRTA IT A +AL D    + D              VAA++ G + G  ++DLD  
Sbjct: 130 ANGGTRTAGITAASLALADAGIPLADL-------------VAAVAVGKIDGVIVLDLDEL 176

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           ED   + D     M     I  +Q +      +++ F A L L    I  + +LQK+ +
Sbjct: 177 EDMYGEADMPIAAMPSLNRITMLQLN---GVLTKEEFKAALKLGLQGIKQIYELQKETL 232


>gi|71981632|ref|NP_001021274.1| EXOSome (multiexonuclease complex) component family member
           (exos-4.1) [Caenorhabditis elegans]
 gi|6226696|sp|Q17533|EXOS4_CAEEL RecName: Full=Putative exosome complex component RRP41; AltName:
           Full=Ribosomal RNA-processing protein 41
 gi|3873830|emb|CAA97771.3| C. elegans protein B0564.1a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 240

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 100/233 (42%), Gaps = 25/233 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR+  Q+R I+    +++ AEGSC ++ G+T +L       +     R      I 
Sbjct: 9   FRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIV 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y     S   R  R     R   +S EI R++ +A  SV+   A    Q+ I C+VIQ
Sbjct: 69  CQYSATKFSGLERKNRT----RGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
            DG    A +    +AL D    M             KG  +A +CG++ G PIVDL   
Sbjct: 125 GDGSNLAACVNATSLALADAGIPM-------------KGIASAATCGVVDGKPIVDLTSR 171

Query: 181 EDSTIDVD---ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           E++ +      A     D   +VE+Q          DH   +++ AK   AD+
Sbjct: 172 EETDLLPRVTLATICGRDEVILVELQNR-----LHIDHLSTVMDAAKATCADV 219


>gi|52548823|gb|AAU82672.1| ribonuclease PH [uncultured archaeon GZfos19A5]
          Length = 247

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 88/193 (45%), Gaps = 19/193 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           RL GR  +++R I +   V K A+GSC ++ GD  ++       E  P   ++ K   + 
Sbjct: 13  RLDGRGFDELRPIKIEVGVLKRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMAVVK 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST +R KR     R    S EI ++   A   V+         I +  +++Q
Sbjct: 73  FRYNMAPFSTDDR-KRPGPDRR----SVEISKVCREAFDPVIMRELYPKMGIEVYVELLQ 127

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           +D GTRTA I  A +AL D    M+D              V++I+ G + G  ++DL+  
Sbjct: 128 SDAGTRTAGINAASIALADAGIPMKDL-------------VSSIAVGKINGEMVLDLNAA 174

Query: 181 EDSTIDVDANFVM 193
           ED+  + D    M
Sbjct: 175 EDNNGEADMPIAM 187


>gi|168063069|ref|XP_001783497.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664987|gb|EDQ51687.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 246

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 83/188 (44%), Gaps = 26/188 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH---- 56
           +RL GR+  +MR +     V   A+GS L   G+T ++         P  + N  H    
Sbjct: 11  LRLDGRRPPEMRHLHAVVGVVPSADGSALFHMGNTQVMAVV----YGPHEVHNKAHQLHD 66

Query: 57  -GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
              +  EY M   STG R +R     R    + E+  +IG+ L + +    L   QI I 
Sbjct: 67  KALVRCEYSMAAFSTGERRRRGKTDRR----ATELSLVIGQTLEAAIMTHLLPRSQIDIY 122

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
             V+QADGGTR A I  A +AL D    M D              V + + G L   P++
Sbjct: 123 VQVLQADGGTRAACINAASMALADAGIPMRDL-------------VVSCAAGYLNSTPLL 169

Query: 176 DLDYGEDS 183
           DL+Y EDS
Sbjct: 170 DLNYQEDS 177


>gi|167044510|gb|ABZ09185.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           crenarchaeote HF4000_APKG6J21]
          Length = 245

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 103/240 (42%), Gaps = 23/240 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +R  GR+ N+ R++++   V K A+GS  ++FG   +L        V P  + N   G +
Sbjct: 16  IRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGIL 75

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P S   R K  A S R+     EI +++  AL   V L       I +  +V+
Sbjct: 76  RVRYHMAPFSVSER-KNPAPSRRE----IEISKVLKEALEPAVILEKFPRTAIDVYLEVL 130

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTR AA+  A VAL D    M D              V + + G +    I+D++ 
Sbjct: 131 QADGGTRCAALDAASVALADAGIPMRD-------------MVCSCAAGKVADALILDVNN 177

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED     D     M + G I  +Q        + D F   + L  +    + ++QK+ +
Sbjct: 178 EEDQAGQADMPIGYMPNFGKITLLQLD---GVLTTDEFKKCIELGIEGCKQVYEIQKNAL 234


>gi|312137048|ref|YP_004004385.1| ribosomal RNA-processing protein rrp41/ski6 [Methanothermus
           fervidus DSM 2088]
 gi|311224767|gb|ADP77623.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanothermus
           fervidus DSM 2088]
          Length = 236

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 103/247 (41%), Gaps = 29/247 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW--IRNTKHGW 58
           +R  GR  N++R + +   V K A+GS  ++ G   +L  A    + P    I+      
Sbjct: 11  VRKDGRAYNELRPVKIKAGVLKRADGSSYIELGSNKILA-AVYGPRDPQITKIKRPDRAI 69

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGG--RSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
           I   Y M P S   R        R G   RS EI ++   AL   + L       I I  
Sbjct: 70  IRCRYNMAPFSVEER-------KRPGPDRRSIEISKITAEALAPSIILEKFPRSSIDIFI 122

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++ADGGTR A IT A VAL D    + D              V A S G + G+ ++D
Sbjct: 123 EVLEADGGTRCAGITAASVALADAGIPLRDL-------------VVACSAGKVNGHVVLD 169

Query: 177 LDYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           L   ED   + D    +M  +  I  +Q   E    + +     ++LA +    + KLQK
Sbjct: 170 LTEEEDKEGEADVPVAIMPRTKEITLLQVDGE---LTPEELEKAIDLAIEGCMSINKLQK 226

Query: 236 DVISNEV 242
             I  ++
Sbjct: 227 KSIERKI 233


>gi|242399326|ref|YP_002994750.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM
           739]
 gi|242265719|gb|ACS90401.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM
           739]
          Length = 246

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 98/224 (43%), Gaps = 23/224 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           R+ GR++ ++R+I +   V K A+GS  V++G   ++       ++ P  ++      + 
Sbjct: 16  RVDGRKKYELRKIKMEVGVLKSADGSAYVEWGKNKIMAAVYGPREIHPKHLQKPDRAILR 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S   R K          RS EI ++I  AL   V L       I I  +V+Q
Sbjct: 76  VRYNMAPFSVEERKK-----PGPDRRSVEISKVIRGALEPAVILELFPRTSIDIFIEVLQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A IT A +AL D    M+D              VAA + G + G  ++DL+  
Sbjct: 131 ADAGTRVAGITAASLALADAGIPMKDL-------------VAACAAGKIDGEIVLDLNKE 177

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           ED+  + D    +M     I  +Q        +++ F   + LA
Sbjct: 178 EDNYGEADVPVAIMPIKNDITLLQMD---GYLTKEEFLEAVKLA 218


>gi|268552543|ref|XP_002634254.1| C. briggsae CBR-EXOS-4.1 protein [Caenorhabditis briggsae]
 gi|206557764|sp|A8WQQ5|EXOS4_CAEBR RecName: Full=Putative exosome complex component RRP41
 gi|309371508|emb|CBG92366.1| CBR-EXOS-4.1 protein [Caenorhabditis briggsae AF16]
          Length = 240

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 99/233 (42%), Gaps = 25/233 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR+  Q+R I+    +++ AEGSC ++ G+T +L       +     R      I 
Sbjct: 9   FRMDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYESKASKRLEDRCAIV 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y     S   R  R     R   +S EI R++ +A  SV+   +    QI I C+VIQ
Sbjct: 69  CQYSTTTFSGLERKNRP----RGDRKSTEISRLLEKAFESVILTESFPRSQIDIFCEVIQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
            DG    A +    +AL D    M             KG  +A +CG++   PIVDL   
Sbjct: 125 GDGSNLAACVNATSLALADAGIPM-------------KGIASAATCGIVETKPIVDLTSR 171

Query: 181 EDSTIDVD---ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           E++ +      A     D   +VE+Q          DH   +++ AK   AD+
Sbjct: 172 EETDLLPRVTLATICGRDEVILVELQNR-----LHIDHLSVVMDAAKATCADV 219


>gi|52550472|gb|AAU84321.1| ribonuclease PH [uncultured archaeon GZfos9D1]
          Length = 245

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 107/238 (44%), Gaps = 27/238 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           RL GR  +++R I +   V K A+GSC ++ G+  ++       E  P   ++ K   + 
Sbjct: 13  RLDGRGFDELRPIKIEVGVLKRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMAVVK 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST +R KR     R    S EI ++   A   V+         I +  +++Q
Sbjct: 73  FRYNMAPFSTDDR-KRPGPDRR----SVEISKVCREAFDPVIMRELYPKMGIDVYVELLQ 127

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           +D GTRTA I  A +AL D    M+D              V++I+ G + G  ++DL+  
Sbjct: 128 SDAGTRTAGINAASIALADAGIPMKDL-------------VSSIAVGKIGGEMVLDLNAA 174

Query: 181 EDSTIDVDANFVM---TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           ED+  + D    M   T++   +++ G       +Q+ F   L LA      + +LQ+
Sbjct: 175 EDNNGEADMPIAMIARTNTITALQMDGR-----MTQEEFGRGLKLAMGACHQIYELQR 227


>gi|212223175|ref|YP_002306411.1| exosome complex exonuclease Rrp41 [Thermococcus onnurineus NA1]
 gi|226740341|sp|B6YSI2|ECX1_THEON RecName: Full=Probable exosome complex exonuclease 1
 gi|212008132|gb|ACJ15514.1| 3'-5' exoribonuclease [Thermococcus onnurineus NA1]
          Length = 249

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 97/224 (43%), Gaps = 23/224 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           R+ GR++ ++R I +   V K A+GS  V++G   +L       ++ P  ++      + 
Sbjct: 17  RIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRAILR 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S   R K     G    RS EI ++I  AL   + L       I I  +V+Q
Sbjct: 77  VRYNMAPFSVEERKK----PG-PDRRSVEISKVIRGALEPALILEMFPRTAIDIFIEVLQ 131

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A IT A +AL D    M D              VAA + G + G  ++DL+  
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDL-------------VAACAAGKIEGEIVLDLNKE 178

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           ED+  + D    +M     I  +Q        ++D F   + LA
Sbjct: 179 EDNYGEADVPVAIMPLKNDITLLQMD---GYLTRDEFIEAVRLA 219


>gi|294464242|gb|ADE77635.1| unknown [Picea sitchensis]
          Length = 243

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 111/244 (45%), Gaps = 30/244 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH---- 56
           +RL GR+  +MR++     V   A+GS + + G+T ++         P  ++N       
Sbjct: 9   LRLDGRRPLEMRQLHAQLGVVDKADGSAIFEMGNTKVIAAVY----GPHEVQNKNQQLPD 64

Query: 57  -GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
              +  EY M   STG+R +R     +   R+ EI  +I + + + +    +   QI I 
Sbjct: 65  QALVRCEYSMANFSTGDRPRR----SKGDRRATEISLVIRQTMEATILTHLMPRTQIDIF 120

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
             V+QADGGTR+A I  A +AL D    M D              V + + G L   P++
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMCDL-------------VTSCAAGYLNSTPLL 167

Query: 176 DLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D++Y EDS    D A  +MT    +  +Q  ++      D F  ++ LA +    +++  
Sbjct: 168 DMNYMEDSAGGPDVAVGLMTKMDKLSLLQMDSK---LPMDIFETVMQLAIEGCKAIVRYI 224

Query: 235 KDVI 238
           +DV+
Sbjct: 225 QDVL 228


>gi|167045225|gb|ABZ09885.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           crenarchaeote HF4000_APKG8O8]
          Length = 245

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 83/183 (45%), Gaps = 19/183 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +R  GR+ N+ R++++   V K A+GS  ++FG   +L        V P  + N   G +
Sbjct: 16  IRCDGRKVNETRKVTIKAGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHLSNPDTGIL 75

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P S   R K  A S R+     EI +++  AL   V L       I +  +V+
Sbjct: 76  RVRYHMEPFSVDER-KNPAPSRRE----IEISKVVKEALEPAVILEKFPRTVIDVFLEVL 130

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTR AA+  A VAL D    M D              V A + G +    I+D++ 
Sbjct: 131 QADGGTRCAALDAASVALADAGIPMRD-------------MVCACAAGKVADTLIIDVNN 177

Query: 180 GED 182
            ED
Sbjct: 178 EED 180


>gi|148642302|ref|YP_001272815.1| exosome complex exonuclease Rrp41 [Methanobrevibacter smithii ATCC
           35061]
 gi|148551319|gb|ABQ86447.1| ribonuclease PH, Rph [Methanobrevibacter smithii ATCC 35061]
          Length = 234

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 105/242 (43%), Gaps = 27/242 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR---NTKHG 57
           +R  GR+ N++R I +   V + A+GS  ++ G   +L       +   +IR       G
Sbjct: 6   IREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRES--YIRRLLEPNTG 63

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            I   Y M P S  +R KR         RS EI ++   ALR  + L       + I  +
Sbjct: 64  VIRCRYNMAPFSVDDR-KRPG----PDRRSSEISKITADALRPALMLENYPRSMVDIYIE 118

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           VI+A+GGTR A IT A VAL D    M+D              V   + G +    I+DL
Sbjct: 119 VIEAEGGTRCAGITAASVALVDAGIPMKDI-------------VVGCAAGKVNDEIILDL 165

Query: 178 DYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              ED     D    +M  +G I  +Q   +    SQ+ F   +NLA +    + ++QK+
Sbjct: 166 SEVEDKEGQADVPIAMMPRTGEITLLQSDGD---LSQEEFEEAINLAMEGCRKVNEIQKE 222

Query: 237 VI 238
            +
Sbjct: 223 AL 224


>gi|225454436|ref|XP_002280302.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147867252|emb|CAN81194.1| hypothetical protein VITISV_022853 [Vitis vinifera]
 gi|297745390|emb|CBI40470.3| unnamed protein product [Vitis vinifera]
          Length = 241

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 86/184 (46%), Gaps = 18/184 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHGWI 59
           +RL GR+  +MR+I         A+GS   + G+T ++       +V    +  +    +
Sbjct: 9   LRLDGRRPMEMRQIRGEIGAVAKADGSAFFEMGNTKVIAAVYGPREVENRSQQISDQALV 68

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             EY M   STG+R+++     +   RS EI  +I + + + +    +   QI I   V+
Sbjct: 69  RCEYTMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTR+A I  A +AL D    M D              V + S G L   P++DL+Y
Sbjct: 125 QADGGTRSACINAATLALADAGIPMRDL-------------VTSCSAGYLNSTPLLDLNY 171

Query: 180 GEDS 183
            EDS
Sbjct: 172 VEDS 175


>gi|332796515|ref|YP_004458015.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
 gi|332694250|gb|AEE93717.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
          Length = 243

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59
           +RL GR+ +++R + +   V K A+GS +V+ G+T +L       E  P  +       +
Sbjct: 15  LRLDGRRPDELRPMKMEVGVLKNADGSAIVEVGNTKILAAVYGPREMHPRHLALPNRAVL 74

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P ST  R K  A S R+     E+ ++I  AL S + +       I +  +V+
Sbjct: 75  RVRYHMTPFSTDER-KNPAPSRRE----IELSKVIREALESQILVEQFPRTSIDVFMEVL 129

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QAD GTR A++  A +A+ D    + D              +AA++ G   G  ++DL+ 
Sbjct: 130 QADAGTRLASLMAASLAVVDAGIPVRDL-------------IAAVAVGKADGVVVLDLNE 176

Query: 180 GEDSTIDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED   + D    M  S G I  +Q +      + + F   + LA   I  +  L+K+ +
Sbjct: 177 PEDMWGEADMPVAMMPSIGQINLLQLN---GNMTPEEFRQGMELAMKGINIIYNLEKETL 233

Query: 239 SNE 241
            N+
Sbjct: 234 KNK 236


>gi|15920655|ref|NP_376324.1| exosome complex exonuclease Rrp41 [Sulfolobus tokodaii str. 7]
 gi|29336896|sp|Q975G8|ECX1_SULTO RecName: Full=Probable exosome complex exonuclease 1
 gi|15621438|dbj|BAB65433.1| 247aa long hypothetical ribonuclease PH [Sulfolobus tokodaii str.
           7]
          Length = 247

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 29/246 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59
           +RL GR+ ++MR I +   V K A+GS + + G+T ++      +E  P  +       +
Sbjct: 19  LRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAVL 78

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII-IDCDV 118
              Y M P ST  R K  A S R+     E+ ++I  AL S + L  L  R +I +  +V
Sbjct: 79  RVRYHMTPFSTDER-KNPAPSRRE----IELSKVIREALESTI-LVELFPRTVIDVFMEV 132

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QAD GTR  ++  A +AL D    M D              +A ++ G   G  ++DL+
Sbjct: 133 LQADAGTRLVSLMAASMALADAGIPMRDL-------------IAGVAVGKADGVLVLDLN 179

Query: 179 YGEDSTIDVDANFVMTDSGH---IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
             ED   + D    M  S     ++++ G+     F Q      L +A+  I  +  L+K
Sbjct: 180 EPEDMWGEADMPVAMMPSLKQVALLQLNGNMTPQEFRQ-----ALEMAQKGIETIYNLEK 234

Query: 236 DVISNE 241
           + I ++
Sbjct: 235 EAIRSK 240


>gi|288930697|ref|YP_003434757.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642]
 gi|288892945|gb|ADC64482.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642]
          Length = 245

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 102/241 (42%), Gaps = 24/241 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           R+ GR  +++R I +   V K A+GSC ++ G   ++       KV P  + +     + 
Sbjct: 13  RIDGRLPDELRPIKIEAGVLKNADGSCYLEMGKNKVMAAVYGPRKVQPKHLADPTQAIVR 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGG--RSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
             Y M P S   R        R G   RS EI ++   AL S++         I I  +V
Sbjct: 73  YRYNMAPFSVEER-------KRPGPDRRSVEISKVSREALESIIMKELFPRSSIDIFVEV 125

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QAD G+RTA +  A VAL D    M             KG + +++   + G  ++D  
Sbjct: 126 LQADAGSRTACLNAASVALVDAGIPM-------------KGIITSVAVAKVDGVLVLDPM 172

Query: 179 YGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
             ED+  + D  F     +G I  +         +++     + LAK    ++ KLQ++ 
Sbjct: 173 KEEDNYGEADIPFAFFIRNGKIESIALLQMDGRVTKEELMQAVELAKKGAMEIYKLQREA 232

Query: 238 I 238
           I
Sbjct: 233 I 233


>gi|167044148|gb|ABZ08830.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           crenarchaeote HF4000_APKG5E24]
          Length = 245

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 73/151 (48%), Gaps = 8/151 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +R  GR+ N+ R++++   V K A+GS  ++FG   +L        V P  + N   G +
Sbjct: 16  IRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGIL 75

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P S   R K  A S R+     EI +++  AL   V L       I +  +V+
Sbjct: 76  RVRYHMEPFSVSER-KNPAPSRRE----IEISKVLKEALEPAVILEKFPRTAIDVYLEVL 130

Query: 120 QADGGTRTAAITGAWVALHDCLQHMED--CS 148
           QADGGTR AA+  A VAL D    M D  CS
Sbjct: 131 QADGGTRCAALDAASVALADAGIPMRDMVCS 161


>gi|254168259|ref|ZP_04875105.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
 gi|197622768|gb|EDY35337.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
          Length = 243

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 10/150 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59
           +R+ GR  NQ+R I +   V K A+GS  +++G   ++       E  P  ++      +
Sbjct: 13  LRIDGRLPNQLRPIKMEVGVLKRADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRAIV 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGG--RSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            A Y M P S   R        R G   R+ E+ ++I  AL SV+ +       I +  +
Sbjct: 73  RARYSMAPFSVDER-------KRPGPDRRAIELSKVISEALESVIFVEKYPRTSIDVYIE 125

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDC 147
           V+QAD GTR A IT A +AL D    M D 
Sbjct: 126 VLQADAGTRVAGITVASLALADAGIPMRDL 155


>gi|222444527|ref|ZP_03607042.1| hypothetical protein METSMIALI_00139 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434092|gb|EEE41257.1| hypothetical protein METSMIALI_00139 [Methanobrevibacter smithii
           DSM 2375]
          Length = 233

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 105/242 (43%), Gaps = 27/242 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR---NTKHG 57
           +R  GR+ N++R I +   V + A+GS  ++ G   +L       +   +IR       G
Sbjct: 5   IREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRE--SYIRRLLEPNTG 62

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            I   Y M P S  +R KR         RS EI ++   ALR  + L       + I  +
Sbjct: 63  VIRCRYNMAPFSVDDR-KRPG----PDRRSSEISKITADALRPALMLENYPRSMVDIYIE 117

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           VI+A+GGTR A IT A VAL D    M+D              V   + G +    ++DL
Sbjct: 118 VIEAEGGTRCAGITAASVALVDAGIPMKDI-------------VVGCAAGKVNDKIVLDL 164

Query: 178 DYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              ED     D    +M  +G I  +Q   +    SQ+ F   +NLA +    + ++QK+
Sbjct: 165 SEVEDKEGQADVPIAMMPRTGEITLLQSDGD---LSQEEFEEAINLAMEGCRKVNEIQKE 221

Query: 237 VI 238
            +
Sbjct: 222 AL 223


>gi|289595860|ref|YP_003482556.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
 gi|289533647|gb|ADD07994.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
          Length = 245

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 6/148 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59
           +R+ GR  NQ+R I +   V K A+GS  +++G   ++       E  P  ++      +
Sbjct: 15  LRIDGRLPNQLRPIKMEVGVLKRADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRAIV 74

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
            A Y M P S   R KR         R+ E+ ++I  AL SV+ +       I +  +V+
Sbjct: 75  RARYSMAPFSVDER-KRPG----PDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVL 129

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDC 147
           QAD GTR A IT A +AL D    M D 
Sbjct: 130 QADAGTRVAGITVASLALADAGIPMRDL 157


>gi|288869794|ref|ZP_06409500.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374]
 gi|288860272|gb|EFC92570.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374]
          Length = 234

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 105/242 (43%), Gaps = 27/242 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR---NTKHG 57
           +R  GR+ N++R I +   V + A+GS  ++ G   +L       +   +IR       G
Sbjct: 6   IREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRES--YIRRLLEPNTG 63

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            I   Y M P S  +R KR         RS EI ++   ALR  + L       + I  +
Sbjct: 64  VIRCRYNMAPFSVDDR-KRPG----PDRRSSEISKITADALRPALMLENYPRSMVDIYIE 118

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           VI+A+GGTR A IT A VAL D    M+D              V   + G +    ++DL
Sbjct: 119 VIEAEGGTRCAGITAASVALVDAGIPMKDI-------------VVGCAAGKVNDKIVLDL 165

Query: 178 DYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              ED     D    +M  +G I  +Q   +    SQ+ F   +NLA +    + ++QK+
Sbjct: 166 SEVEDKEGQADVPIAMMPRTGEITLLQSDGD---LSQEEFEEAINLAMEGCRKVNEIQKE 222

Query: 237 VI 238
            +
Sbjct: 223 AL 224


>gi|21228725|ref|NP_634647.1| exosome complex exonuclease 1 [Methanosarcina mazei Go1]
 gi|29336795|sp|Q8PTT8|ECX1_METMA RecName: Full=Probable exosome complex exonuclease 1
 gi|20907234|gb|AAM32319.1| Ribonuclease [Methanosarcina mazei Go1]
          Length = 493

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 103/241 (42%), Gaps = 26/241 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-TATLEEKVPMWIRNTKHGWI 59
           +RL GR+ +++R + +   V   A+GSC +++G   +L       E  P   +      I
Sbjct: 16  LRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRSQRADSAVI 75

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGG--RSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
              Y M   S  +R        R G   RS EI ++   A   V+         I I  +
Sbjct: 76  RYRYNMASFSVEDR-------ARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVE 128

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+QAD GTRTAAI  + +AL D    M             KG + + + G + G  ++DL
Sbjct: 129 VLQADAGTRTAAINASSIALADAGIPM-------------KGLITSCAFGKVDGKIVLDL 175

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +  ED+  + D    MT  G I  +Q        + D     L L K    +++++Q+ V
Sbjct: 176 NKEEDNYGEADFPVAMTQDGEITLIQMD---GNLTPDEIKQGLELVKKGCKEILEIQQAV 232

Query: 238 I 238
           +
Sbjct: 233 L 233


>gi|57641569|ref|YP_184047.1| exosome complex exonuclease Rrp41 [Thermococcus kodakarensis KOD1]
 gi|73919276|sp|Q5JIR6|ECX1_PYRKO RecName: Full=Probable exosome complex exonuclease 1
 gi|57159893|dbj|BAD85823.1| exosome subunit Rrp41p homolog, 3'-5' exoribonuclease [Thermococcus
           kodakarensis KOD1]
          Length = 249

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 97/224 (43%), Gaps = 23/224 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           R+ GR++ ++R I +   V K A+GS  V++G   +L       ++ P  ++      + 
Sbjct: 17  RIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIHPKHLQRPDRAILR 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S   R K          RS EI ++I  AL   + L       I +  +++Q
Sbjct: 77  VRYNMAPFSVEERKK-----PGPDRRSVEISKVIRGALEPALLLHMFPRTAIDVFIEILQ 131

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A IT A +AL D    M+D              VAA + G + G  ++DL+  
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMKDL-------------VAACAAGKIDGEIVLDLNKE 178

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           ED+  + D    +M     I  +Q        ++D F   + LA
Sbjct: 179 EDNYGEADVPVAIMPLKNDITLLQMD---GYLTKDEFLEAVRLA 219


>gi|70606424|ref|YP_255294.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus
           acidocaldarius DSM 639]
 gi|68567072|gb|AAY80001.1| exosome complex exonuclease RRP43-like protein [Sulfolobus
           acidocaldarius DSM 639]
          Length = 276

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 22/219 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ N+ R++ +T   +K AEGS LVK G+T +L    LEE  P +      G + 
Sbjct: 27  VRLDGRKPNEYRQLKVTLGYAKKAEGSALVKLGNTLVLAGVKLEEDSP-YPDTPNQGNLI 85

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QI 112
               +LP +           G     S E+ R++ R+LR    +DLS L    G +   +
Sbjct: 86  VNVELLPLAY-----ETFEPGPPDENSIELARIVDRSLRDSKAIDLSKLVIAPGKKVWTL 140

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHVAAI 164
            +D  V+  DG    A +  +  A++D  L  +E   ++ ++++       ++   V  +
Sbjct: 141 WVDVYVLDYDGNILDACMLASIAAIYDTKLPKVEVEGDEIKINKEERLSIPLVNYPVVTV 200

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ 203
           +   +  Y +VD +  E+S  D   +   T  G IV +Q
Sbjct: 201 TTAKIGKYVVVDPNLDEESIADAKLSISYTKEGTIVGLQ 239


>gi|171185834|ref|YP_001794753.1| exosome complex exonuclease Rrp41 [Thermoproteus neutrophilus
           V24Sta]
 gi|254782538|sp|B1Y978|ECX1_THENV RecName: Full=Probable exosome complex exonuclease 1
 gi|170935046|gb|ACB40307.1| exosome complex exonuclease 1 [Thermoproteus neutrophilus V24Sta]
          Length = 246

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 18/183 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59
           +R  GR  +QMRE+ ++  V   A+GS +V +G T  +       E  P  +     G +
Sbjct: 13  VRADGRAPDQMREVQISVGVISNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P ST +  K    S R+     EI +++  AL   V L      +I +  +++
Sbjct: 73  RVRYHMAPFSTKDERKSPTPSRRE----IEISKVLREALEPAVMLEQYPRSRIDVFIEIL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADG TR A++T A +AL D   +M D              V  +S G++ G  ++DL+ 
Sbjct: 129 QADGSTRVASLTAASLALADAGIYMRDL-------------VIGVSVGLVDGTVVLDLNG 175

Query: 180 GED 182
            ED
Sbjct: 176 LED 178


>gi|315427141|dbj|BAJ48756.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
           subterraneum]
 gi|315427160|dbj|BAJ48774.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
           subterraneum]
          Length = 246

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 89/189 (47%), Gaps = 19/189 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +R+ GR+ ++MR++ +   V +  +GS  V+ G T +        +V P  +     G I
Sbjct: 15  LRVDGRRPDEMRKMRMEVGVLEKTDGSAYVELGGTRIYAGVIGPREVHPKHLELPDKGVI 74

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M   S   R K   ++ R+     E+ ++I  AL +VV L       I I  +VI
Sbjct: 75  NCRYHMASFSVDER-KPLGMTRRE----IELSKVIREALETVVFLEEFPRMMIDIFVEVI 129

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTRTA IT A +AL D    M D              +AAI+ G + G  ++D++ 
Sbjct: 130 QADGGTRTAGITAASLALADAGIPMADM-------------IAAIAVGKVDGVLVLDINE 176

Query: 180 GEDSTIDVD 188
            ED   + D
Sbjct: 177 QEDKYGEAD 185


>gi|11498104|ref|NP_069329.1| exosome complex exonuclease Rrp41 [Archaeoglobus fulgidus DSM 4304]
 gi|29336576|sp|O29757|ECX1_ARCFU RecName: Full=Probable exosome complex exonuclease 1
 gi|83754325|pdb|2BA0|F Chain F, Archaeal Exosome Core
 gi|83754326|pdb|2BA0|E Chain E, Archaeal Exosome Core
 gi|83754327|pdb|2BA0|D Chain D, Archaeal Exosome Core
 gi|83754334|pdb|2BA1|D Chain D, Archaeal Exosome Core
 gi|83754335|pdb|2BA1|E Chain E, Archaeal Exosome Core
 gi|83754336|pdb|2BA1|F Chain F, Archaeal Exosome Core
 gi|2650133|gb|AAB90744.1| ribonuclease PH (rph) [Archaeoglobus fulgidus DSM 4304]
          Length = 258

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 24/242 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +RL GR+ +++R I +   V K A+GSC ++ G   ++       +V P  +++     I
Sbjct: 16  LRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSKAII 75

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGG--RSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
              Y M P S   R        R G   RS EI ++   A  +V+         I I  +
Sbjct: 76  RYRYNMAPFSVEER-------KRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVE 128

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+QAD G+RTA +  A VAL D    M             KG + +++ G   G  ++D 
Sbjct: 129 VLQADAGSRTACLNAASVALVDAGVPM-------------KGMITSVAVGKADGQLVLDP 175

Query: 178 DYGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              ED+  + D  F  +  +G I  +         ++D     + LAK     + ++Q++
Sbjct: 176 MKEEDNFGEADMPFAFLIRNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQRE 235

Query: 237 VI 238
            I
Sbjct: 236 AI 237


>gi|255579328|ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
 gi|223529966|gb|EEF31893.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
          Length = 241

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 26/188 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----TK 55
           +RL GR+  +MR++         A+GS + + G+T ++         P  ++N       
Sbjct: 9   LRLDGRRPMEMRQLRAQIGAVSKADGSAVFEMGNTKVIAAVY----GPREVQNRSQQIID 64

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
              +  EY M   STG+R+++     +   RS EI  +I + +   +    +   QI I 
Sbjct: 65  QALVRCEYTMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEECILTHLMPRSQIDIY 120

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
             V+QADGGTR+A I  A +AL D    M D              V + S G L   P++
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDL-------------VTSCSAGYLNSTPLL 167

Query: 176 DLDYGEDS 183
           DL+Y EDS
Sbjct: 168 DLNYVEDS 175


>gi|295322007|pdb|3M7N|D Chain D, Archaeoglobus Fulgidus Exosome With Rna Bound To The
           Active Site
 gi|295322008|pdb|3M7N|E Chain E, Archaeoglobus Fulgidus Exosome With Rna Bound To The
           Active Site
 gi|295322009|pdb|3M7N|F Chain F, Archaeoglobus Fulgidus Exosome With Rna Bound To The
           Active Site
 gi|295322019|pdb|3M85|D Chain D, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
           Active Site
 gi|295322020|pdb|3M85|E Chain E, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
           Active Site
 gi|295322021|pdb|3M85|F Chain F, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
           Active Site
          Length = 258

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 24/242 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +RL GR+ +++R I +   V K A+GSC ++ G   ++       +V P  +++     I
Sbjct: 16  LRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAII 75

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGG--RSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
              Y M P S   R        R G   RS EI ++   A  +V+         I I  +
Sbjct: 76  RYRYNMAPFSVEER-------KRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVE 128

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+QAD G+RTA +  A VAL D    M             KG + +++ G   G  ++D 
Sbjct: 129 VLQADAGSRTACLNAASVALVDAGVPM-------------KGMITSVAVGKADGQLVLDP 175

Query: 178 DYGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              ED+  + D  F  +  +G I  +         ++D     + LAK     + ++Q++
Sbjct: 176 MKEEDNFGEADMPFAFLIRNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQRE 235

Query: 237 VI 238
            I
Sbjct: 236 AI 237


>gi|147919675|ref|YP_686581.1| putative exosome complex exonuclease 1 [uncultured methanogenic
           archaeon RC-I]
 gi|110621977|emb|CAJ37255.1| putative exosome complex exonuclease 1 [uncultured methanogenic
           archaeon RC-I]
          Length = 253

 Score = 68.6 bits (166), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 99/239 (41%), Gaps = 24/239 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           RL GR    +R I     V K A+GSC ++FG   ++       +V P  ++   +  + 
Sbjct: 13  RLDGRGPFDLRPIKFQAGVLKRADGSCYLEFGGNKVMAAVYGPREVHPRHLQQASNAIVR 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII-IDCDVI 119
             Y M   S   R KR     R    S EI ++   AL SV+ L  L  R  I I  +++
Sbjct: 73  YRYNMASFSVEER-KRPGPDRR----SIEISKVSREALESVI-LKELYPRSAIDIFVEIL 126

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QAD GTR A I  A VAL D    M             K  V+A + G      ++DL+ 
Sbjct: 127 QADAGTRVAGINAASVALADAGIPM-------------KCLVSACAVGKADDTLVLDLNK 173

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED+    D    M   G I   Q        + D F   LN+A +    L +LQK  +
Sbjct: 174 DEDNYGQADLPIAMNQFGEITLCQMDGH---MTSDEFSTALNMAIEGCKKLHELQKQAL 229


>gi|308491849|ref|XP_003108115.1| CRE-TIN-9.2 protein [Caenorhabditis remanei]
 gi|308248963|gb|EFO92915.1| CRE-TIN-9.2 protein [Caenorhabditis remanei]
          Length = 372

 Score = 68.6 bits (166), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 17/183 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR+  Q+R I+    +++ AEGSC ++ G+T +L       +     R      I 
Sbjct: 125 FRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKASKRLEDRCAIV 184

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y     S   R  R     R   +S EI R++ +A  SV+   +    QI I C+VIQ
Sbjct: 185 CQYSTTTFSGLERKNRP----RGDRKSTEISRLLEKAFESVILTESFPRSQIDIFCEVIQ 240

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
            DG    A +    +AL D    M             KG  +A +CG++   PIVDL   
Sbjct: 241 GDGSNLAACVNATSLALADAGIPM-------------KGIASAATCGIVDAKPIVDLTSR 287

Query: 181 EDS 183
           E++
Sbjct: 288 EET 290


>gi|119719494|ref|YP_919989.1| exosome complex exonuclease 1 [Thermofilum pendens Hrk 5]
 gi|119524614|gb|ABL77986.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermofilum pendens
           Hrk 5]
          Length = 245

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 94/225 (41%), Gaps = 23/225 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           R+ GR  ++MR + +   V K A+GS  V+ G+  +L       E +P          + 
Sbjct: 16  RVDGRLPDEMRPLRVEAGVLKNADGSAYVELGNNKVLAAVYGPREPMPRHEALPDRAILK 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y MLP S   R      S +   R  E+ ++I  AL   V L+      I +   +++
Sbjct: 76  CRYSMLPFSVAERK-----SPQPSRREIELSKVIREALAPAVFLNEYPRTSIEVYIHILE 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I    VAL D    M D              VAAI+ G +    ++D++  
Sbjct: 131 ADGGTRTASIIAGSVALADAGIAMRDL-------------VAAIAVGKIGNVLVLDINGI 177

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           ED   D D    +M   G I  +Q       F+       L LA+
Sbjct: 178 EDQYGDGDMPIAMMPQRGEITLLQAD---GVFTPQEIEEALRLAQ 219


>gi|18977940|ref|NP_579297.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus DSM 3638]
 gi|29336822|sp|Q8U0L9|ECX1_PYRFU RecName: Full=Probable exosome complex exonuclease 1
 gi|18893710|gb|AAL81692.1| ribonuclease ph (rph) [Pyrococcus furiosus DSM 3638]
          Length = 250

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 96/224 (42%), Gaps = 23/224 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           RL GR++ ++R I +   V K A GS  +++G   ++       ++ P  ++      + 
Sbjct: 17  RLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIHPKHLQRPDRAILR 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S   R K     G    RS EI ++I  AL   + L       I +  +V+Q
Sbjct: 77  VRYNMAPFSVEERKK----PG-PDRRSIEISKVIRGALEPALILEMFPRTAIDVFIEVLQ 131

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A IT A +AL D    M D              VAA S G + G  ++DL+  
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDL-------------VAACSAGKIEGEIVLDLNKE 178

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           ED+  + D    +M     I  +Q        +++ F   + LA
Sbjct: 179 EDNYGEADVPVAIMPIKNDITLLQMD---GYLTKEEFIEAVKLA 219


>gi|52549528|gb|AAU83377.1| ribonuclease PH [uncultured archaeon GZfos27G5]
          Length = 247

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 106/238 (44%), Gaps = 27/238 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           R  GR  +++R I +   V K A+GSC ++ G+  ++       E  P   ++ K   I 
Sbjct: 13  RSDGRGFDELRPIKIEVGVLKRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMAVIK 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST +R KR     R    S EI ++   A   V+         I +  +++Q
Sbjct: 73  FRYNMAPFSTDDR-KRPGPDRR----SVEISKVCREAFDPVIMRELYPKMGIEVYVELLQ 127

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           +D GTRTA I  A +AL D    M+D              V++I+ G + G  ++DL+  
Sbjct: 128 SDAGTRTAGINAASIALADAGIPMKDL-------------VSSIAVGKINGEVVLDLNAA 174

Query: 181 EDSTIDVDANFVM---TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           ED+  + D    M   T++   +++ G       +Q+ F   L LA      + +LQ+
Sbjct: 175 EDNNGEADMPIAMIARTNTITALQMDGR-----MTQEEFGRGLKLAMGACHQIYELQR 227


>gi|167044981|gb|ABZ09646.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           crenarchaeote HF4000_APKG8G2]
          Length = 245

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 73/151 (48%), Gaps = 8/151 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +R  GR+ N+ R++++   V K A+GS  ++FG   +L        V P  + N   G +
Sbjct: 16  IRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGIL 75

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P S   R K  A S R+     EI +++  AL   V L       I +  +V+
Sbjct: 76  RVRYHMEPFSVSER-KNPAPSRRE----IEISKVLKEALEPAVILEKFPRTAIDVYLEVL 130

Query: 120 QADGGTRTAAITGAWVALHDCLQHMED--CS 148
           QADGG+R AA+  A VAL D    M D  CS
Sbjct: 131 QADGGSRCAALDAASVALADAGIPMRDMVCS 161


>gi|315229927|ref|YP_004070363.1| exosome complex exonuclease 1 [Thermococcus barophilus MP]
 gi|315182955|gb|ADT83140.1| exosome complex exonuclease 1 [Thermococcus barophilus MP]
          Length = 246

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 23/224 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           R+ GR++ ++R I +   V K A+GS  +++G   +L       ++ P  ++      + 
Sbjct: 16  RIDGRKKYELRPIKMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDRAILR 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S   R K     G    RS EI ++I  AL   + L       I +  +V+Q
Sbjct: 76  VRYNMAPFSVEERKK----PG-PDRRSVEISKVIRGALEPAIILELFPRTAIDVFIEVLQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A IT A +AL D    M+D              V+A + G + G  ++DL+  
Sbjct: 131 ADAGTRVAGITAASLALADAGIPMKDL-------------VSACAAGKIEGQIVLDLNKE 177

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           ED+  + D    +M     I  +Q        +++ F   + LA
Sbjct: 178 EDNYGEADVPVAIMPIKNDITLLQMD---GYLTREEFLEAVRLA 218


>gi|73669984|ref|YP_305999.1| exosome complex exonuclease 1 [Methanosarcina barkeri str. Fusaro]
 gi|72397146|gb|AAZ71419.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosarcina barkeri
           str. Fusaro]
          Length = 501

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 103/241 (42%), Gaps = 26/241 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-TATLEEKVPMWIRNTKHGWI 59
           +RL GR  +++R + +   V   A+GSC +++G   +L       E  P   +      I
Sbjct: 14  LRLDGRHADEIRPMKIEIGVLSRADGSCYLEWGRNKVLVGVFGPREAHPRRSQRADTAVI 73

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGG--RSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
             +Y M   ST +R        R G   RS EI ++   A   V+         I I  +
Sbjct: 74  RYKYNMASFSTEDR-------ARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVE 126

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           ++QAD GTRTAAI  + +AL D    M             KG V + + G + G  ++DL
Sbjct: 127 ILQADAGTRTAAINASSIALADAGIPM-------------KGLVTSCAFGKVDGQIVLDL 173

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +  ED+  + D    MT  G I  +Q        + D       L K    +++++Q+ V
Sbjct: 174 NKEEDNYGEADFPVAMTQDGEITLLQMD---GNLTTDEIRKGFELVKKGCKEILEIQQAV 230

Query: 238 I 238
           +
Sbjct: 231 L 231


>gi|167043479|gb|ABZ08176.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           microorganism HF4000_APKG2H5]
          Length = 238

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 97/219 (44%), Gaps = 27/219 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60
           R+ GR+   +R IS+   V   A GS  V++G  H++       E  P  I       + 
Sbjct: 16  RMDGRKPADLRPISIEVGVVPVAAGSACVRWGTNHVIAAVYGPMEAHPRKISRQDRAVLD 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQG--GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
             Y M P ST +R+       R G   RS+EI ++   AL SVV L      +I ++ ++
Sbjct: 76  VRYNMAPFSTTDRI-------RPGFNRRSREISKVTSDALESVVLLEMYPRSKIRVEIEI 128

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           + A+ GTR   +T A VAL      M D              V +++ G + G  I DL+
Sbjct: 129 LCAEAGTRCVGLTAASVALAHAGIPMTDM-------------VVSVASGKINGVVICDLN 175

Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHF 216
             ED+  + D    ++ +SG +V +Q   +    S D F
Sbjct: 176 KEEDNYGEADLPMGMLPNSGDLVFLQMDGD---LSPDEF 211


>gi|15920654|ref|NP_376323.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus tokodaii str.
           7]
 gi|29336897|sp|Q975G9|ECX2_SULTO RecName: Full=Probable exosome complex exonuclease 2
 gi|15621437|dbj|BAB65432.1| 275aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 275

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 97/221 (43%), Gaps = 22/221 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ +  R IS+T   +K AEGS LVK GDT +L    LEE+ P +      G + 
Sbjct: 27  IRLDGRKNSDYRPISVTLNYAKKAEGSALVKLGDTMVLAGVKLEEEEP-FPDTPNQGNLV 85

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QI 112
               +LP +           G     + E+ R++ R+LR    VDLS L    G +    
Sbjct: 86  VNVELLPLAY-----ETFEPGPPDENAIELARVVDRSLRDSKAVDLSKLVIIPGKKVWTA 140

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQVLKGHVAAISCGMLC- 170
            +D  V+   G    A    A  AL++  L  +E   +  ++ +  K  V  I+  ++  
Sbjct: 141 WVDVYVLDYGGNVLDACTLAAVAALYNTKLPKVEIEGDNVKIIKEEKTDVTPIAYPVVTV 200

Query: 171 ------GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
                  Y +VD    E+S  DV  +F     G IV +Q S
Sbjct: 201 TVAKIGKYLVVDPSLDEESIADVKISFSYVQDGRIVGMQKS 241


>gi|14520826|ref|NP_126301.1| exosome complex exonuclease Rrp41 [Pyrococcus abyssi GE5]
 gi|29337010|sp|Q9V119|ECX1_PYRAB RecName: Full=Probable exosome complex exonuclease 1
 gi|170292234|pdb|2PNZ|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With Udp And Gmp
 gi|170292236|pdb|2PO0|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With Adp In Double Conformation
 gi|170292239|pdb|2PO1|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With A Single Stranded 10-Mer Poly(A) Rna
 gi|170292241|pdb|2PO2|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With Cdp
 gi|5458042|emb|CAB49532.1| rph ribonuclease PH, exosome complex exonuclease [Pyrococcus abyssi
           GE5]
          Length = 249

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 95/224 (42%), Gaps = 23/224 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           R+ GR++ ++R I +   V K A GS  +++G   ++       ++ P  ++      + 
Sbjct: 17  RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILR 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S   R K          RS EI ++I  AL   + L       I +  +V+Q
Sbjct: 77  VRYNMAPFSVEERKK-----PGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQ 131

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A IT A +AL D    M D              VAA + G + G  ++DL+  
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDL-------------VAACAAGKIEGEIVLDLNKE 178

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           ED+  + D    +M     I  +Q        ++D F   + LA
Sbjct: 179 EDNYGEADVPVAIMPLKNDITLLQMD---GYLTKDEFIEAVKLA 219


>gi|324522716|gb|ADY48116.1| Exosome complex exonuclease RRP41 [Ascaris suum]
          Length = 249

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 97/230 (42%), Gaps = 29/230 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            RL GR+ +Q+R I+    V   A+GS  ++ G+T +L  A      P     T+    T
Sbjct: 9   FRLDGRKPHQIRNINYKLGVYTQADGSAYLEQGNTKVLC-AVYGPHEPRQRNRTQEDRCT 67

Query: 61  --AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
              +Y M   ST  R +R     R   RS E  R++ +A  + + +      QI I C++
Sbjct: 68  VNCQYSMATFSTNERKERP----RGDRRSMEFARLMEKAFETAILVENYPHAQIDIFCEL 123

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG-MLCGYPIVDL 177
           +QADG    A +  A +AL D                 ++G VAA SC   L G P  D+
Sbjct: 124 LQADGSHLAACVNAATLALAD-------------AGVPMRGLVAAASCACALDGTPCADV 170

Query: 178 DYGEDSTIDVD---ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
              E+S +      AN    D   + E+Q    R     DH   ML  A+
Sbjct: 171 SAREESNVMPRITIANISGMDEIILTELQNRLHR-----DHLIPMLQCAR 215


>gi|146302863|ref|YP_001190179.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera sedula
           DSM 5348]
 gi|145701113|gb|ABP94255.1| ribosomal RNA-processing protein RRP42 [Metallosphaera sedula DSM
           5348]
          Length = 280

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 98/233 (42%), Gaps = 33/233 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+    R +S+T   +K A+GS LVK GDT +L    +EE  P +      G +  
Sbjct: 28  RSDGRKFTDYRPLSITLGYAKKADGSALVKLGDTTVLAGVKVEEDEP-YPDTPNQGNLVV 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +LP +           G     + E+ R++ R+LR    VDLS L    G +   + 
Sbjct: 87  NAELLPLAY-----ETFEPGPPDENAIELSRVVDRSLRDSKAVDLSGLVIEPGKKVWTVW 141

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC-------------LQHMEDCSNKFQLSQVLKGH 160
           +D  V+   G    A    A  AL+D              +Q  E  +        +K  
Sbjct: 142 VDISVLDYGGNVLDACTIAAVAALYDAKLPKVVRENDNIIIQKEEKVT-----PLPIKYP 196

Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
           V  +S   +  + +VD D  E+  +D   +F    SG+IV +Q S E  +FSQ
Sbjct: 197 VVTVSVAKIGKFLVVDPDLEEEGIMDAKISFSYIPSGNIVGIQKSGE-GSFSQ 248


>gi|327400938|ref|YP_004341777.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6]
 gi|327316446|gb|AEA47062.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6]
          Length = 246

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 100/239 (41%), Gaps = 20/239 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           RL GR  +++R I +   V + A+GSC ++ G   ++       +V P  +++     I 
Sbjct: 14  RLDGRDFDELRPIKIEAGVLRRADGSCYIEMGKNKIVAAVYGPREVHPRHLQDPSRAIIR 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S   R K     G    RS EI ++   AL  V+         I I  +V+Q
Sbjct: 74  YRYNMAPFSVEERKK----PG-PDRRSIEISKVSREALEPVILKELFPRSGIDIFVEVLQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTRTA +  A VAL D                 ++G + A++   + G  ++D    
Sbjct: 129 ADAGTRTACLNAASVALIDA-------------GVAMRGMITAVAVAKVEGEIVLDPMKE 175

Query: 181 EDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           ED+  + D  F  +  +G I  +         S +     L LAK     +  +Q++ I
Sbjct: 176 EDNYGEADVPFAFLIRNGKIESIALLQMDGKMSAEEMKKALELAKKGAMQIYNIQREAI 234


>gi|84490039|ref|YP_448271.1| exosome complex exonuclease Rrp41 [Methanosphaera stadtmanae DSM
           3091]
 gi|84373358|gb|ABC57628.1| putative exosome complex, exonuclease 1 subunit [Methanosphaera
           stadtmanae DSM 3091]
          Length = 232

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 106/244 (43%), Gaps = 31/244 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH---- 56
           +R  GR  N +R + +   V   A+GS  ++ G+  +L         P  I + KH    
Sbjct: 6   IRKDGRAYNTLRNMKMEVGVLNNADGSAYIECGNNKILVGVY----GPREIHSKKHSKPD 61

Query: 57  -GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
              +  +Y M P S   R KR   + R    S EI ++I  A+   + L       I I 
Sbjct: 62  GAVLRCKYNMAPFSVKER-KRPGPNRR----STEISKLISEAITPNIFLEKYPRASIDIS 116

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            +V++A+GGTR   I GA +AL D    M+D              ++A + G +  + ++
Sbjct: 117 IEVLEAEGGTRCLGIVGASLALADAEIPMKDL-------------ISACAVGKVDDHIVL 163

Query: 176 DLDYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           DL   ED T   D    ++  +G I  +Q        +Q+ F   L+LA D    + +LQ
Sbjct: 164 DLSEQEDQTGQADMPLAIIPRTGEITFLQMD---GNLTQEEFEEALDLAYDGCYYINQLQ 220

Query: 235 KDVI 238
           K+ +
Sbjct: 221 KEAL 224


>gi|332157779|ref|YP_004423058.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2]
 gi|331033242|gb|AEC51054.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2]
          Length = 249

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 19/188 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           R+ GR++ ++R I +   V K A+GS  +++G   ++      +++ P  ++      + 
Sbjct: 17  RIDGRKKYELRPIKMEVGVLKNADGSAYIEWGKNKIIAAVYGPKELHPKHLQRPDRAILR 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S   R K     G    RS EI ++I  AL   + L       I +  +V+Q
Sbjct: 77  VRYNMAPFSVEERKK----PG-PDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQ 131

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A IT A +AL D    M D              VAA + G + G  ++DL+  
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDL-------------VAACAAGKIEGEIVLDLNKE 178

Query: 181 EDSTIDVD 188
           ED+  + D
Sbjct: 179 EDNYGEAD 186


>gi|270697519|ref|ZP_06222988.1| tRNA nucleotidyltransferase [Haemophilus influenzae HK1212]
 gi|270315955|gb|EFA28017.1| tRNA nucleotidyltransferase [Haemophilus influenzae HK1212]
          Length = 93

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 45/68 (66%)

Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
           +KG V+AIS G++ G  + DL+Y EDS  + D N VM + G ++EVQG+AE   FS +  
Sbjct: 10  IKGLVSAISVGIVDGQAVCDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEEL 69

Query: 217 FAMLNLAK 224
             +L+LAK
Sbjct: 70  LTLLDLAK 77


>gi|254172979|ref|ZP_04879653.1| exosome complex exonuclease 1 [Thermococcus sp. AM4]
 gi|214033135|gb|EEB73963.1| exosome complex exonuclease 1 [Thermococcus sp. AM4]
          Length = 248

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 19/188 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           R+ GR++ ++R+I +   V K A+GS  +++G   +L       ++ P  ++      + 
Sbjct: 16  RIDGRKKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDTAVLR 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S   R K          RS EI ++I  AL   + L       + +  +V+Q
Sbjct: 76  VRYNMAPFSVEERKK-----PGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A IT A +AL D    M D              VAA + G + G  ++DL+  
Sbjct: 131 ADAGTRVAGITAASLALADAGVPMRDL-------------VAACAAGKIDGEIVLDLNKD 177

Query: 181 EDSTIDVD 188
           ED+  + D
Sbjct: 178 EDNYGEAD 185


>gi|298674553|ref|YP_003726303.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303]
 gi|298287541|gb|ADI73507.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303]
          Length = 333

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 110/239 (46%), Gaps = 22/239 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +R+ GR+ +++R + +   V   A+GSC +++G+  +++      ++ P  ++      I
Sbjct: 14  LRVDGRRTDEIRPMKVDIGVLSRADGSCYLEWGNNKIISAVYGPRELHPRRMQRPDAAVI 73

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y M   S  +R +R   S R    S EI ++   A   VV      +  I +  +V+
Sbjct: 74  RYKYNMASFSVEDR-QRPGPSRR----SSEISKVSSEAFEPVVMTQFYPNTVIDVFSEVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           +AD GTRTAAI  A +AL D                 LK  V+A + G + G  ++DL+ 
Sbjct: 129 EADAGTRTAAINAATLALIDA-------------GIPLKSLVSACAVGKVDGQLVLDLNK 175

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED+  + D    +T  G I  +Q        ++D     + L K+    + ++Q++ +
Sbjct: 176 KEDNEGEADLPVAITQDGEITLLQMDGH---LTEDEIKQAMELVKNGCQQIQQIQREAL 231


>gi|14601412|ref|NP_147949.1| exosome complex exonuclease Rrp41 [Aeropyrum pernix K1]
 gi|29337017|sp|Q9YC03|ECX1_AERPE RecName: Full=Probable exosome complex exonuclease 1
 gi|5105131|dbj|BAA80445.1| exosome complex exonuclease Rrp41 homologue [Aeropyrum pernix K1]
          Length = 246

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 105/240 (43%), Gaps = 25/240 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59
           R  GR    +R + +   +   A+GS LV+FG T +L  A    + P   +        +
Sbjct: 17  RHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLA-AVYGPREPHQRFYVLPDRAAL 75

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P ST  R K  A S R+     E+ +++  AL  VV         I +  +V+
Sbjct: 76  RVRYHMAPFSTDER-KSPAPSRRE----IELSKVVREALEPVVLAEEFPRTVIDVFLEVL 130

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTRTAA+T A +AL D    M             +  V  ++ G + G  +VD+D 
Sbjct: 131 QADGGTRTAAVTAASLALADAGIPM-------------RALVGGVAVGKIQGVLVVDVDE 177

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED   + D       D G I  +Q +      + + F   L +A   I  +++++K+ I
Sbjct: 178 LEDMYGEADMPVAAAPDIGEITLLQLN---GVLTGEEFRTALAMALRAIDRVVEMEKEAI 234


>gi|145592134|ref|YP_001154136.1| exosome complex exonuclease Rrp41 [Pyrobaculum arsenaticum DSM
           13514]
 gi|254782535|sp|A4WM67|ECX1_PYRAR RecName: Full=Probable exosome complex exonuclease 1
 gi|145283902|gb|ABP51484.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 246

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 5/147 (3%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59
           +R  GR  +QMRE+ ++  V   A+GS +V +G T  +       E  P  +     G +
Sbjct: 13  VRADGRLPDQMREVKISVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P ST +  K    S R+     EI +++  AL   V L      +I +  ++I
Sbjct: 73  RVRYHMAPFSTKDERKSPTPSRRE----IEISKVLREALEPAVLLEQYPRSRIDVFIEII 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMED 146
           QADG TR A++T A +AL D   +M D
Sbjct: 129 QADGSTRVASLTAASLALADAGIYMRD 155


>gi|240104093|ref|YP_002960402.1| exosome complex exonuclease Rrp41 [Thermococcus gammatolerans EJ3]
 gi|259645401|sp|C5A2B9|ECX1_THEGJ RecName: Full=Probable exosome complex exonuclease 1
 gi|239911647|gb|ACS34538.1| 3'-5' exoribonuclease, exosome complex exonuclease 1, Rrp41p-like
           protein (Rrp41p) [Thermococcus gammatolerans EJ3]
          Length = 249

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 19/188 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           R+ GR++ ++R+I +   V K A+GS  +++G   +L       ++ P  ++      + 
Sbjct: 17  RIDGRRKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDTAVLR 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S   R K          RS EI ++I  AL   + L       + +  +V+Q
Sbjct: 77  VRYNMAPFSVEERKK-----PGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQ 131

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A IT A +AL D    M D              VAA + G + G  ++DL+  
Sbjct: 132 ADAGTRVAGITAASLALADAGVPMRDL-------------VAACAAGKIDGEIVLDLNKD 178

Query: 181 EDSTIDVD 188
           ED+  + D
Sbjct: 179 EDNYGEAD 186


>gi|170070082|ref|XP_001869459.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus]
 gi|167866003|gb|EDS29386.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus]
          Length = 245

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 98/227 (43%), Gaps = 27/227 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ N++R I     V    +GS  V+ G+T +L       + P    N +   + 
Sbjct: 9   LRLDGRRSNELRRIQCKLGVFSQPDGSAYVEQGNTKVLAAVYGPHQAPAKKSNHEECVVN 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y M   STG R KR     R   +SQE+   + +AL + +        QI +  +V+ 
Sbjct: 69  CQYSMATFSTGERKKRP----RGDRKSQEMTIHLQQALSAAIKTDLYPKSQIDVYIEVLM 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGG   A++  A +AL D                 LK +V A +  +    P++D+   
Sbjct: 125 ADGGNYCASVNAATLALIDA-------------GICLKEYVCACTASLAGKVPLMDVSNL 171

Query: 181 ED----STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           E+     T+ V +   + +SG I  ++ S     F  DH   +L  A
Sbjct: 172 EEMSGGPTLTVAS---LPNSGKIAFMEMSQR---FHLDHLPNVLETA 212


>gi|312375907|gb|EFR23155.1| hypothetical protein AND_13423 [Anopheles darlingi]
          Length = 246

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 101/228 (44%), Gaps = 28/228 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ N++R I     V    +GS  V+ G+T +L       +      N +   + 
Sbjct: 9   LRLDGRRANELRHIQCKLGVFSQPDGSAYVEQGNTKVLAAVYGPHQASSKKSNHEEAIVN 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y M   STG R KR     R   +SQE+   + +AL + + +      QI +  +V+Q
Sbjct: 69  CQYSMATFSTGERKKRP----RGDRKSQEMTIHLKQALSAAIKMELYPRSQIDVYIEVLQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDY 179
           ADGG   A++  A +AL D                 LK +V A +  +  G  P++D+ +
Sbjct: 125 ADGGNYCASVNAATLALIDA-------------GICLKEYVCACTASLANGNVPLMDVSH 171

Query: 180 GEDS----TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
            E++    T+ V +   +  SG I  ++ S     F  DH   +L  A
Sbjct: 172 LEENSGGPTLTVAS---LPSSGKIAFMEMSQR---FHLDHLPKVLETA 213


>gi|18313178|ref|NP_559845.1| exosome complex exonuclease Rrp41 [Pyrobaculum aerophilum str. IM2]
 gi|29336868|sp|Q8ZVM9|ECX1_PYRAE RecName: Full=Probable exosome complex exonuclease 1
 gi|18160692|gb|AAL64027.1| 3' exoribonuclease family protein [Pyrobaculum aerophilum str. IM2]
          Length = 246

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 5/147 (3%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59
           +R  GR  +QMRE+ +   V   A+GS +V +G T  +       E  P  +     G +
Sbjct: 13  VRADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P ST +  K    S R+     EI +++  AL   + L      +I +  +++
Sbjct: 73  RVRYHMAPFSTKDERKSPTPSRRE----IEISKILREALEPAIVLEQYPRSRIDVFVEIL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMED 146
           QADG TR A++T A +AL D   +M D
Sbjct: 129 QADGSTRVASLTAASLALADAGIYMRD 155


>gi|20093819|ref|NP_613666.1| exosome complex exonuclease Rrp41 [Methanopyrus kandleri AV19]
 gi|29336819|sp|Q8TYC1|ECX1_METKA RecName: Full=Probable exosome complex exonuclease 1
 gi|19886742|gb|AAM01596.1| Predicted exosome subunit, RNase PH [Methanopyrus kandleri AV19]
          Length = 239

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 93/226 (41%), Gaps = 23/226 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +RL GR+ ++MR + +   V K A+GS  ++ G   ++       ++ P   +      +
Sbjct: 14  LRLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQKPDRAVV 73

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P S   R KR     R    S EI ++   AL   +         I I  +V+
Sbjct: 74  RFRYNMAPFSVDER-KRPGPDRR----SIEISKLSKEALEPAIFTEYYPRTAIDIFVEVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QAD GTR A I+ A VAL D    M D              VAA + G + G  ++D  Y
Sbjct: 129 QADAGTRCAGISAASVALADAGIEMRDL-------------VAACAAGKVEGKVVLDPMY 175

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
            ED   + D    +M   G I  +Q   +    +   F   + LAK
Sbjct: 176 YEDGYGEADVPLAMMPKEGKITLLQMDGD---MTPGEFKQAVKLAK 218


>gi|70606425|ref|YP_255295.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius DSM
           639]
 gi|76364178|sp|Q4JB27|ECX1_SULAC RecName: Full=Probable exosome complex exonuclease 1
 gi|68567073|gb|AAY80002.1| ribonuclease PH [Sulfolobus acidocaldarius DSM 639]
          Length = 243

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 110/243 (45%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59
           +R  GR+ +++R I +   V K A+GS + + G+T ++      +E  P  +       +
Sbjct: 15  LRTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKASL 74

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P ST  R K  A S R+     E+ ++I  AL S + L+      I I  +V+
Sbjct: 75  RVRYHMTPFSTDER-KNPAPSRRE----IELSKVIREALESTILLNLFPRTVIDIFMEVL 129

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QAD GTR  A+  A +AL D    M D              +A ++ G   G  ++DL+ 
Sbjct: 130 QADAGTRLVALMAASMALADAGIPMRDL-------------IAGVAVGKADGSLVLDLNE 176

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED   + D    V+   G +V +Q +      + D F     LA+  I+ +  LQK+ +
Sbjct: 177 QEDMWGEADMPIAVLPSLGQVVLLQLN---GFMTPDEFRRAFELAQKGISSIYALQKEAL 233

Query: 239 SNE 241
            N+
Sbjct: 234 KNK 236


>gi|284161628|ref|YP_003400251.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631]
 gi|284011625|gb|ADB57578.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631]
          Length = 244

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 99/241 (41%), Gaps = 24/241 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           RL GR   ++R I +   V   A+GSC ++ G   ++       +V P  + +     I 
Sbjct: 12  RLDGRDFEELRPIKIEAGVLNRADGSCYLEMGGNKVVAAVYGPREVHPKHLEDPSKAIIR 71

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGG--RSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
             Y M P S   R        R G   RS EI ++   AL  V+         I I  +V
Sbjct: 72  YRYSMAPFSVEER-------KRPGPDRRSIEISKVSREALEPVIMKELFPRSAIDIFVEV 124

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QAD G+RTA +  A VAL D    M             KG V +++   + G  ++D  
Sbjct: 125 LQADAGSRTACLNAASVALIDAGIPM-------------KGMVTSVAVAKVDGILVLDPM 171

Query: 179 YGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
             ED+  + D  F  +  +G I  +         S++     L +AK     + +LQ++ 
Sbjct: 172 KEEDNYGEADIPFAFLIRNGKIESITLLQMDGRVSKEELKKALEMAKKGAMQIYQLQREA 231

Query: 238 I 238
           I
Sbjct: 232 I 232


>gi|170290983|ref|YP_001737799.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170175063|gb|ACB08116.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 248

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 105/243 (43%), Gaps = 29/243 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +R  GR  ++MR I +   V + A+GS  V++G   +L       +V P  +       I
Sbjct: 18  IRTDGRLPHEMRPIKMMVGVLEKADGSAFVEWGGNRILAAVFGPREVHPKHMVLPDRALI 77

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGG---RSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            A Y M P ST  R        R+ G   RS E+ ++I  AL+  +         I I  
Sbjct: 78  RARYNMAPFSTPER--------RRPGPDRRSIELSKVIREALKPAIFAENYPGSVIDIFV 129

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+++D GTR A I  A                       ++G V+A S G +  + +VD
Sbjct: 130 EVLRSDAGTRVAGINAA-------------SLALASAGVAMRGLVSACSVGRVGSFIVVD 176

Query: 177 LDYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            ++ ED   D D    +M +S  I  +Q      T S++ F   L+L +  I  + ++QK
Sbjct: 177 PNHDEDMWGDSDMPLAMMMESEEITLLQAD---GTLSEEEFKEALDLGRRAIRFVYEVQK 233

Query: 236 DVI 238
           + +
Sbjct: 234 EAL 236


>gi|284174962|ref|ZP_06388931.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus 98/2]
 gi|299689089|pdb|3L7Z|B Chain B, Crystal Structure Of The S. Solfataricus Archaeal Exosome
 gi|299689092|pdb|3L7Z|E Chain E, Crystal Structure Of The S. Solfataricus Archaeal Exosome
 gi|299689095|pdb|3L7Z|H Chain H, Crystal Structure Of The S. Solfataricus Archaeal Exosome
 gi|261602405|gb|ACX92008.1| exosome complex exonuclease 1 [Sulfolobus solfataricus 98/2]
          Length = 245

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 106/244 (43%), Gaps = 27/244 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           R  GR+ +++R I +   V K A+GS + + G+T  +      +E  P  +       + 
Sbjct: 16  RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST  R K  A S R+     E+ ++I  AL S V +       I +  +++Q
Sbjct: 76  VRYHMTPFSTDER-KNPAPSRRE----IELSKVIREALESAVLVELFPRTAIDVFTEILQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD G+R  ++  A +AL D    M D              +A ++ G   G  I+DL+  
Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIILDLNET 177

Query: 181 EDSTIDVDANFVMTDSGH---IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           ED   + D    M  S +   + ++ GS      + D F    +LA   I  +  L+++ 
Sbjct: 178 EDMWGEADMPIAMMPSLNQVTLFQLNGS-----MTPDEFRQAFDLAVKGINIIYNLEREA 232

Query: 238 ISNE 241
           + ++
Sbjct: 233 LKSK 236


>gi|15897636|ref|NP_342241.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus P2]
 gi|29337007|sp|Q9UXC2|ECX1_SULSO RecName: Full=Probable exosome complex exonuclease 1
 gi|71042717|pdb|2BR2|B Chain B, Rnase Ph Core Of The Archaeal Exosome
 gi|71042719|pdb|2BR2|D Chain D, Rnase Ph Core Of The Archaeal Exosome
 gi|71042721|pdb|2BR2|F Chain F, Rnase Ph Core Of The Archaeal Exosome
 gi|71042723|pdb|2BR2|H Chain H, Rnase Ph Core Of The Archaeal Exosome
 gi|71042725|pdb|2BR2|J Chain J, Rnase Ph Core Of The Archaeal Exosome
 gi|71042727|pdb|2BR2|L Chain L, Rnase Ph Core Of The Archaeal Exosome
 gi|71042729|pdb|2BR2|N Chain N, Rnase Ph Core Of The Archaeal Exosome
 gi|71042731|pdb|2BR2|P Chain P, Rnase Ph Core Of The Archaeal Exosome
 gi|71042733|pdb|2BR2|R Chain R, Rnase Ph Core Of The Archaeal Exosome
 gi|71042735|pdb|2BR2|T Chain T, Rnase Ph Core Of The Archaeal Exosome
 gi|71042737|pdb|2BR2|V Chain V, Rnase Ph Core Of The Archaeal Exosome
 gi|71042739|pdb|2BR2|X Chain X, Rnase Ph Core Of The Archaeal Exosome
 gi|83754539|pdb|2C37|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754541|pdb|2C37|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754543|pdb|2C37|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754545|pdb|2C37|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754547|pdb|2C37|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754549|pdb|2C37|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754551|pdb|2C37|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754553|pdb|2C37|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754555|pdb|2C37|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754557|pdb|2C37|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754559|pdb|2C37|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754561|pdb|2C37|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754563|pdb|2C38|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754565|pdb|2C38|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754567|pdb|2C38|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754569|pdb|2C38|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754571|pdb|2C38|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754573|pdb|2C38|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754575|pdb|2C38|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754577|pdb|2C38|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754579|pdb|2C38|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754581|pdb|2C38|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754583|pdb|2C38|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754585|pdb|2C38|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754587|pdb|2C39|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754589|pdb|2C39|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754591|pdb|2C39|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754593|pdb|2C39|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754595|pdb|2C39|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754597|pdb|2C39|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754599|pdb|2C39|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754601|pdb|2C39|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754603|pdb|2C39|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754605|pdb|2C39|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754607|pdb|2C39|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754609|pdb|2C39|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|6015742|emb|CAB57569.1| ribonuclease PH [Sulfolobus solfataricus P2]
 gi|13813903|gb|AAK41031.1| Ribonuclease PH (rph) [Sulfolobus solfataricus P2]
          Length = 248

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 106/244 (43%), Gaps = 27/244 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           R  GR+ +++R I +   V K A+GS + + G+T  +      +E  P  +       + 
Sbjct: 19  RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST  R K  A S R+     E+ ++I  AL S V +       I +  +++Q
Sbjct: 79  VRYHMTPFSTDER-KNPAPSRRE----IELSKVIREALESAVLVELFPRTAIDVFTEILQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD G+R  ++  A +AL D    M D              +A ++ G   G  I+DL+  
Sbjct: 134 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIILDLNET 180

Query: 181 EDSTIDVDANFVMTDSGH---IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           ED   + D    M  S +   + ++ GS      + D F    +LA   I  +  L+++ 
Sbjct: 181 EDMWGEADMPIAMMPSLNQVTLFQLNGS-----MTPDEFRQAFDLAVKGINIIYNLEREA 235

Query: 238 ISNE 241
           + ++
Sbjct: 236 LKSK 239


>gi|156388129|ref|XP_001634554.1| predicted protein [Nematostella vectensis]
 gi|156221638|gb|EDO42491.1| predicted protein [Nematostella vectensis]
          Length = 247

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 26/189 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR+ +++R++     V   A+GS  ++ G+T  L T       P  ++N       
Sbjct: 12  LRIDGRKASELRKMVCKVGVLSQADGSAYIEMGNTKALATVY----GPHEVQNKAKALHD 67

Query: 59  ---ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
              +  ++GM   STG R K+     R   ++ E+  M+ R   + + ++     QI I 
Sbjct: 68  RVLLNVQFGMATFSTGERKKKP----RGDRKATELSMMVRRTFEAAILINLYPRSQIDIY 123

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
             V+QADGG   A I    +AL                   LK +V+A +   +   P++
Sbjct: 124 VQVLQADGGNHVACINAVTLAL-------------INAGIPLKDYVSACTVSFVNDTPLM 170

Query: 176 DLDYGEDST 184
           D++Y E+ST
Sbjct: 171 DINYLEEST 179


>gi|126459546|ref|YP_001055824.1| exosome complex exonuclease Rrp41 [Pyrobaculum calidifontis JCM
           11548]
 gi|254782536|sp|A3MUP1|ECX1_PYRCJ RecName: Full=Probable exosome complex exonuclease 1
 gi|126249267|gb|ABO08358.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum
           calidifontis JCM 11548]
          Length = 246

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 5/147 (3%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59
           +R  GR  +QMRE+ +       A+GS +V +G T  +       E  P  +     G +
Sbjct: 13  LRADGRAPDQMREVQIQVGTVSNADGSAVVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P ST +  K    S R+     EI +++  AL   V L      +I +  +++
Sbjct: 73  RVRYHMAPFSTKDERKSPTPSRRE----IEISKVLREALEPAVMLEQYPRSRIDVFIEIL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMED 146
           QADG TR A++T A +AL D   +M D
Sbjct: 129 QADGSTRVASLTAASLALADAGIYMRD 155


>gi|229584881|ref|YP_002843383.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.27]
 gi|228019931|gb|ACP55338.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.27]
          Length = 245

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 19/196 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           R+ GR+ +++R I +   V K A+GS + + G+T  +      +E  P  +       + 
Sbjct: 16  RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST  R K  A S R+     E+ ++I  AL S V +       I +  +++Q
Sbjct: 76  VRYHMTPFSTDER-KNPAPSRRE----IELSKVIREALESAVLVELFPRTAIDVFTEILQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD G+R  ++  A +AL D    M D              +A ++ G   G  ++DL+  
Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIVLDLNEA 177

Query: 181 EDSTIDVDANFVMTDS 196
           ED   + D    M  S
Sbjct: 178 EDMWGEADMPVAMMPS 193


>gi|323474735|gb|ADX85341.1| exosome complex exonuclease 1 [Sulfolobus islandicus REY15A]
          Length = 245

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 94/216 (43%), Gaps = 22/216 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           R+ GR+ +++R I +   V K A+GS + + G+T  +      +E  P  +       + 
Sbjct: 16  RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST  R K  A S R+     E+ ++I  AL S V +       I +  +++Q
Sbjct: 76  VRYHMTPFSTDER-KNPAPSRRE----IELSKVIREALESAVLVELFPRTAIDVFTEILQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD G+R  ++  A +AL D    M D              +A ++ G   G  ++DL+  
Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIVLDLNEP 177

Query: 181 EDSTIDVDANFVMTDSGH---IVEVQGSAERATFSQ 213
           ED   + D    M  S +   + ++ G+     F Q
Sbjct: 178 EDMWGEADMPVAMMPSLNQVTLFQLNGNMTPEEFRQ 213


>gi|227830374|ref|YP_002832154.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus L.S.2.15]
 gi|229579192|ref|YP_002837590.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.G.57.14]
 gi|229582056|ref|YP_002840455.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.N.15.51]
 gi|284997880|ref|YP_003419647.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5]
 gi|227456822|gb|ACP35509.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.S.2.15]
 gi|228009906|gb|ACP45668.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.G.57.14]
 gi|228012772|gb|ACP48533.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.N.15.51]
 gi|284445775|gb|ADB87277.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5]
          Length = 245

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 94/216 (43%), Gaps = 22/216 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           R+ GR+ +++R I +   V K A+GS + + G+T  +      +E  P  +       + 
Sbjct: 16  RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST  R K  A S R+     E+ ++I  AL S V +       I +  +++Q
Sbjct: 76  VRYHMTPFSTDER-KNPAPSRRE----IELSKVIREALESAVLVELFPRTAIDVFTEILQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD G+R  ++  A +AL D    M D              +A ++ G   G  ++DL+  
Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIVLDLNEP 177

Query: 181 EDSTIDVDANFVMTDSGH---IVEVQGSAERATFSQ 213
           ED   + D    M  S +   + ++ G+     F Q
Sbjct: 178 EDMWGEADMPVAMMPSLNQVTLFQLNGNMTPEEFRQ 213


>gi|227827677|ref|YP_002829457.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.14.25]
 gi|238619848|ref|YP_002914674.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.4]
 gi|227459473|gb|ACP38159.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.14.25]
 gi|238380918|gb|ACR42006.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.4]
          Length = 245

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 94/216 (43%), Gaps = 22/216 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           R+ GR+ +++R I +   V K A+GS + + G+T  +      +E  P  +       + 
Sbjct: 16  RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST  R K  A S R+     E+ ++I  AL S V +       I +  +++Q
Sbjct: 76  VRYHMTPFSTDER-KNPAPSRRE----IELSKVIREALESAVLVELFPRTAIDVFTEILQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD G+R  ++  A +AL D    M D              +A ++ G   G  ++DL+  
Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIVLDLNEP 177

Query: 181 EDSTIDVDANFVMTDSGH---IVEVQGSAERATFSQ 213
           ED   + D    M  S +   + ++ G+     F Q
Sbjct: 178 EDMWGEADMPVAMMPSLNQVTLFQLNGNMTPEEFRQ 213


>gi|227827678|ref|YP_002829458.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
           M.14.25]
 gi|229584882|ref|YP_002843384.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
           M.16.27]
 gi|259645402|sp|C3N5R4|ECX2_SULIA RecName: Full=Probable exosome complex exonuclease 2
 gi|259645405|sp|C3MVG5|ECX2_SULIM RecName: Full=Probable exosome complex exonuclease 2
 gi|227459474|gb|ACP38160.1| 3' exoribonuclease [Sulfolobus islandicus M.14.25]
 gi|228019932|gb|ACP55339.1| 3' exoribonuclease [Sulfolobus islandicus M.16.27]
          Length = 275

 Score = 61.6 bits (148), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 97/232 (41%), Gaps = 28/232 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+    R +S+T   +K A+GS LVK G T +L    LE   P +      G +  
Sbjct: 28  RQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLIV 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII------- 114
              +LP +           G     + E+ R++ R+LR   D  AL   +++I       
Sbjct: 87  NVELLPLAY-----ETFEPGPPDENAIELARVVDRSLR---DSKALDLTKLVIEPGKSVW 138

Query: 115 ----DCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHVA 162
               D  V+   G    A    +  ALH+  +  +E  SN F++++        L   V 
Sbjct: 139 TVWLDVYVLDYGGNVLDACTLASVAALHNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVV 198

Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
            +S   +  Y IVD D  E+S +D   +F  T    IV +Q S + +   QD
Sbjct: 199 TVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGKGSMSLQD 250


>gi|323477463|gb|ADX82701.1| exosome complex exonuclease 1 [Sulfolobus islandicus HVE10/4]
          Length = 245

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 19/196 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           R+ GR+  ++R I +   V K A+GS + + G+T  +      +E  P  +       + 
Sbjct: 16  RIDGRKPEELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST  R K  A S R+     E+ ++I  AL S V +       I +  +++Q
Sbjct: 76  VRYHMTPFSTDER-KNPAPSRRE----IELSKVIREALESAVLVELFPRTAIDVFTEILQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD G+R  ++  A +AL D    M D              +A ++ G   G  ++DL+  
Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIVLDLNEP 177

Query: 181 EDSTIDVDANFVMTDS 196
           ED   + D    M  S
Sbjct: 178 EDMWGEADMPVAMMPS 193


>gi|302798759|ref|XP_002981139.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii]
 gi|300151193|gb|EFJ17840.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii]
          Length = 264

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 26/188 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-----PMWIRNTK 55
           +RL GR+  +MR++     V + A GS + + G+T ++       +V      +W R   
Sbjct: 9   LRLDGRRPLEMRQLHAELGVVENANGSAMFEMGNTKVIAAVYGPHEVHNRSQQLWDR--- 65

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
              +  EY M   STG+R ++   + R    S EI  +I + L + +  + +   QI I 
Sbjct: 66  -ALVRCEYSMAAFSTGDRRRKGKGNRR----STEISLVIRQTLEAAILTNLMPKSQIDIY 120

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
             V+QADGGTR+A I  A +AL +    M D              VA+ + G L G P++
Sbjct: 121 VQVLQADGGTRSACINAAALALAEAGIPMRDL-------------VASCAAGYLNGTPLL 167

Query: 176 DLDYGEDS 183
           DL+Y EDS
Sbjct: 168 DLNYVEDS 175


>gi|302801728|ref|XP_002982620.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii]
 gi|300149719|gb|EFJ16373.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii]
          Length = 242

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 26/188 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-----PMWIRNTK 55
           +RL GR+  +MR++     V + A GS + + G+T ++       +V      +W R   
Sbjct: 9   LRLDGRRPLEMRQLHAELGVVENANGSAMFEMGNTKVIAAVYGPHEVHNRSQQLWDR--- 65

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
              +  EY M   STG+R ++   + R    S EI  +I + L + +  + +   QI I 
Sbjct: 66  -ALVRCEYSMAAFSTGDRRRKGKGNRR----STEISLVIRQTLEAAILTNLMPKSQIDIY 120

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
             V+QADGGTR+A I  A +AL +    M D              VA+ + G L G P++
Sbjct: 121 VQVLQADGGTRSACINAAALALAEAGIPMRDL-------------VASCAAGYLNGTPLL 167

Query: 176 DLDYGEDS 183
           DL+Y EDS
Sbjct: 168 DLNYVEDS 175


>gi|14591333|ref|NP_143411.1| exosome complex exonuclease Rrp41 [Pyrococcus horikoshii OT3]
 gi|29336584|sp|O59223|ECX1_PYRHO RecName: Full=Probable exosome complex exonuclease 1
 gi|3257978|dbj|BAA30661.1| 249aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 249

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 19/188 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           R+ GR++ ++R I +   V K A GS  +++G   ++       ++    ++      + 
Sbjct: 17  RIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELHSKHLQRPDRAILR 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S   R K     G    RS EI ++I  AL   + L       I +  +V+Q
Sbjct: 77  VRYNMAPFSVEERKK----PG-PDRRSIEISKVIKGALEPALILEMFPRTSIDVFIEVLQ 131

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A IT A +AL D    M D              VAA + G + G  ++DL+  
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDL-------------VAACAAGKIEGEIVLDLNKE 178

Query: 181 EDSTIDVD 188
           ED+  + D
Sbjct: 179 EDNYGEAD 186


>gi|325959906|ref|YP_004291372.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21]
 gi|325331338|gb|ADZ10400.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21]
          Length = 243

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 105/245 (42%), Gaps = 31/245 (12%)

Query: 4   SGRQEN----QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR---NTKH 56
           SGR +N    ++R++ +   V + A+GS  ++ G   +L  A +     +++R       
Sbjct: 17  SGRADNRAFDELRKMKIEAGVLERADGSAYLEIGGNKVL--AAVYGPRELFVRRLMQPNK 74

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
             +  +Y M P S  +R KR     R    S EI ++  +AL   V L       I +  
Sbjct: 75  AVLRCKYNMAPFSVDDR-KRPGPDRR----SVEISKLASQALTPAVFLEKFPRSTIDVFI 129

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +VI+A+GGTR A IT A VAL D    M D              V A + G   G  I+D
Sbjct: 130 EVIEAEGGTRCAGITAASVALADAGIPMRD-------------MVVACAAGKSDGKVILD 176

Query: 177 LDYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           L   ED     D    +M  +G I  +Q        +++ F   L+LA +    + + QK
Sbjct: 177 LSEVEDKEGQADVPIAIMPRTGEITLLQMD---GNLTEEEFEQALDLAINGCKIISEKQK 233

Query: 236 DVISN 240
             I N
Sbjct: 234 AAIKN 238


>gi|229582055|ref|YP_002840454.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
           Y.N.15.51]
 gi|259645406|sp|C3NHC2|ECX2_SULIN RecName: Full=Probable exosome complex exonuclease 2
 gi|228012771|gb|ACP48532.1| 3' exoribonuclease [Sulfolobus islandicus Y.N.15.51]
          Length = 275

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 97/232 (41%), Gaps = 28/232 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+    R +S+T   +K A+GS LVK G T +L    LE   P +      G +  
Sbjct: 28  RQDGRKLTDYRPLSITLNYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLIV 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII------- 114
              +LP +           G     + E+ R++ R+LR   D  AL   +++I       
Sbjct: 87  NVELLPLAY-----ETFEPGPPDENAIELARVVDRSLR---DSKALDLTKLVIEPGKSVW 138

Query: 115 ----DCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHVA 162
               D  V+   G    A    +  AL++  +  +E  SN F++++        L   V 
Sbjct: 139 TVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVV 198

Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
            +S   +  Y IVD D  E+S +D   +F  T    IV +Q S + +   QD
Sbjct: 199 TVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGKGSMSLQD 250


>gi|332796516|ref|YP_004458016.1| 3' exoribonuclease [Acidianus hospitalis W1]
 gi|332694251|gb|AEE93718.1| 3' exoribonuclease [Acidianus hospitalis W1]
          Length = 276

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 22/219 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ N+ R +S+T   +K A+GS LVK GDT +L    +E + P +      G + 
Sbjct: 27  IRADGRKFNEYRPLSITLSYAKKADGSALVKLGDTTVLAGVKVEPEEP-FEDTPNQGNLV 85

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QI 112
               +LP +           G     + E+ R++ R+LR    +DLS L    G +   +
Sbjct: 86  VNVELLPLAY-----ETFEPGPPDENAIELSRVVDRSLRDSKSIDLSKLVIEPGKKIWTV 140

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQVLKGH-------VAAI 164
            +D  V+   G    A    A  AL+D  L  +    ++ ++ +  KG        V  +
Sbjct: 141 WVDIYVLDYGGNILDACTLAAVSALYDTRLPKVVKEGDEIKIIKEEKGEKLPMNFPVVTV 200

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ 203
           S   +  + +VD D  E+  +D   +   T  G IV +Q
Sbjct: 201 SVAKIGKHLVVDPDLDEEGIMDAKISLSYTPEGRIVGIQ 239


>gi|157133589|ref|XP_001656263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
 gi|157134369|ref|XP_001663263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
 gi|108870517|gb|EAT34742.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
 gi|108870766|gb|EAT34991.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
          Length = 245

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 97/227 (42%), Gaps = 27/227 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ N++R I     V    +GS  ++ G+T +L       + P    + +   + 
Sbjct: 9   LRLDGRRANELRRIQCKLGVFSQPDGSAYIEQGNTKVLAAVYGPHQAPAKKSSHEEVIVN 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y M   STG R +R     R   +SQE+   + +AL + +        QI +  +V+ 
Sbjct: 69  CQYSMATFSTGERKRRP----RGDRKSQEMTIHLQQALSAAIKTELYPKSQIDVYIEVLM 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGG   A++  A +AL D                 LK +V A +  +    P++D+   
Sbjct: 125 ADGGNYCASVNAATLALIDA-------------GICLKEYVCACTASLAGKIPLMDVSNL 171

Query: 181 ED----STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           E+     T+ V +   +  SG I  ++ S     F  DH   +L  A
Sbjct: 172 EEMSGGPTLTVAS---LPSSGKIAFMEMSQR---FHLDHLPKVLETA 212


>gi|237739457|ref|ZP_04569938.1| nucleoside-triphosphatase [Fusobacterium sp. 2_1_31]
 gi|229423065|gb|EEO38112.1| nucleoside-triphosphatase [Fusobacterium sp. 2_1_31]
          Length = 262

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 40/67 (59%)

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           VDL Y EDS  +VD N +M   G  +EVQG+ E +TF++     +L+LA+  I  +I LQ
Sbjct: 1   VDLKYSEDSAAEVDMNVIMNKKGEFIEVQGTGEESTFTRTELNGLLDLAEASIKRIINLQ 60

Query: 235 KDVISNE 241
             VI  E
Sbjct: 61  DKVIEQE 67


>gi|323474736|gb|ADX85342.1| 3' exoribonuclease [Sulfolobus islandicus REY15A]
 gi|323477464|gb|ADX82702.1| 3' exoribonuclease [Sulfolobus islandicus HVE10/4]
          Length = 275

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 97/232 (41%), Gaps = 28/232 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+    R +S+T   +K A+GS LVK G T +L    LE   P +      G +  
Sbjct: 28  RQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLIV 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII------- 114
              +LP +           G     + E+ R++ R+LR   D  AL   +++I       
Sbjct: 87  NVELLPLAY-----ETFEPGPPDENAIELARVVDRSLR---DSKALDLTKLVIEPGKSVW 138

Query: 115 ----DCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHVA 162
               D  V+   G    A    +  AL++  +  +E  SN F++++        L   V 
Sbjct: 139 TVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVV 198

Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
            +S   +  Y IVD D  E+S +D   +F  T    IV +Q S + +   QD
Sbjct: 199 TVSIAKIDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGKGSMSLQD 250


>gi|126031138|pdb|2JE6|B Chain B, Structure Of A 9-Subunit Archaeal Exosome
 gi|145579801|pdb|2JEA|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna
 gi|145579805|pdb|2JEB|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions
          Length = 250

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 105/244 (43%), Gaps = 27/244 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           R  GR+ +++R I +   V K A+GS + + G+T  +      +E  P  +       + 
Sbjct: 21  RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST  R K  A S R+     E+ ++I  AL S V +       I +  +++Q
Sbjct: 81  VRYHMTPFSTDER-KNPAPSRRE----IELSKVIREALESAVLVELFPRTAIDVFTEILQ 135

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD G+R  ++  A +AL D    M D              +A ++ G   G  I+DL+  
Sbjct: 136 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIILDLNET 182

Query: 181 EDSTIDVDANFVMTDSGH---IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           E    + D    M  S +   + ++ GS      + D F    +LA   I  +  L+++ 
Sbjct: 183 EAMWGEADMPIAMMPSLNQVTLFQLNGS-----MTPDEFRQAFDLAVKGINIIYNLEREA 237

Query: 238 ISNE 241
           + ++
Sbjct: 238 LKSK 241


>gi|330803994|ref|XP_003289985.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum]
 gi|325079933|gb|EGC33511.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum]
          Length = 247

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 114/252 (45%), Gaps = 28/252 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59
           +R+ GR+ N++R I++   VS  A+GS   + G+T ++       ++ +  ++      +
Sbjct: 12  LRIDGRRANELRRINIQMGVSNRADGSAYYEQGNTKIIAAVYGPREISVSGQSIFDRAIV 71

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             E+     ST  R  ++   G +   + EI  ++ +A  S +        QI I   V+
Sbjct: 72  KCEFATSSFSTTERKPQQKTKGDRA--TTEISNLVKQAFESTIQTHLYPRSQINIYIQVL 129

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           Q+DGG + AAI  + +AL D    M+D              V A+S   + G  ++DL++
Sbjct: 130 QSDGGLKAAAINASTLALIDAGISMKD-------------FVCAVSTSCIDGVAVLDLNH 176

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK---DRIADLI---- 231
            E+ +   D    +    G ++ +   ++     QD F ++L L +    +I  ++    
Sbjct: 177 IEERSGGPDCLLSIQPQIGGVISLNMDSK---VPQDLFESVLELGEKGCKKIFSILSDQV 233

Query: 232 -KLQKDVISNEV 242
            K   D+ISN++
Sbjct: 234 KKYSTDLISNQL 245


>gi|326422491|gb|EGD71888.1| 3' exoribonuclease [Candidatus Parvarchaeum acidophilus
           ARMAN-5_'5-way FS']
          Length = 236

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 104/251 (41%), Gaps = 33/251 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           R   R  N++R +     V   A+GS   + G+T  +      E+V P  I     G I 
Sbjct: 5   RFDKRAFNELRPMEAETGVVPNAKGSARFRIGNTEAIAAVYGPEEVKPRHIEKVDRGVIV 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y MLP S  +R K          R  EI ++I  AL   + L  +    I +   + Q
Sbjct: 65  CKYDMLPFSVPDRAK-----PGMDRRDIEISQVITNALNRAIILEDMPRAMINVRVYITQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL--- 177
           AD GTR A++T A +A  D    M D              VAA++ G +  +  +DL   
Sbjct: 120 ADAGTRCASLTAASMACADAGLPMRDL-------------VAAVAAGKIGDHVCLDLSKE 166

Query: 178 --DYGE-DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
             D+ E +   DV   F +     I+ +Q        S+D    ++ + K+    + +L+
Sbjct: 167 EEDFHEGEGATDVPIAF-LPSKNEILLLQLDGR---VSRDELKKVIEVGKEGAMKIYELE 222

Query: 235 KDVI----SNE 241
           K+ +    SNE
Sbjct: 223 KEALKRRFSNE 233


>gi|227830375|ref|YP_002832155.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
           L.S.2.15]
 gi|229579193|ref|YP_002837591.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
           Y.G.57.14]
 gi|238619849|ref|YP_002914675.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
           M.16.4]
 gi|284997881|ref|YP_003419648.1| 3'exoribonuclease [Sulfolobus islandicus L.D.8.5]
 gi|259645403|sp|C4KHE3|ECX2_SULIK RecName: Full=Probable exosome complex exonuclease 2
 gi|259645404|sp|C3MQ47|ECX2_SULIL RecName: Full=Probable exosome complex exonuclease 2
 gi|259645407|sp|C3NED0|ECX2_SULIY RecName: Full=Probable exosome complex exonuclease 2
 gi|227456823|gb|ACP35510.1| 3' exoribonuclease [Sulfolobus islandicus L.S.2.15]
 gi|228009907|gb|ACP45669.1| 3' exoribonuclease [Sulfolobus islandicus Y.G.57.14]
 gi|238380919|gb|ACR42007.1| 3' exoribonuclease [Sulfolobus islandicus M.16.4]
 gi|284445776|gb|ADB87278.1| 3'exoribonuclease [Sulfolobus islandicus L.D.8.5]
          Length = 275

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 97/232 (41%), Gaps = 28/232 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+    R +S+T   +K A+GS LVK G T +L    LE   P +      G +  
Sbjct: 28  RQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLIV 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII------- 114
              +LP +           G     + E+ R++ R+LR   D  AL   +++I       
Sbjct: 87  NVELLPLAY-----ETFEPGPPDENAIELARVVDRSLR---DSKALDLTKLVIEPGKSVW 138

Query: 115 ----DCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHVA 162
               D  V+   G    A    +  AL++  +  +E  SN F++++        L   V 
Sbjct: 139 TVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVV 198

Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
            +S   +  Y IVD D  E+S +D   +F  T    IV +Q S + +   QD
Sbjct: 199 TVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGKGSMSLQD 250


>gi|260834851|ref|XP_002612423.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae]
 gi|229297800|gb|EEN68432.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae]
          Length = 246

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 19/184 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GWI 59
           R+ GR+ +++R++     V   A+GS  ++ G+T  L T     +V       +H    +
Sbjct: 13  RIDGRRSSELRKVCARMGVFTQADGSAYIEQGNTKALATVYGPHEVRKGRGKIQHDRAVV 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             ++ M   STG R  R     +   RSQE+   + +   +V+        QI I   ++
Sbjct: 73  NCQFSMATFSTGERKSRP----KGDRRSQEMSMHLRQTFEAVIVTELFPRSQIDIYVQIL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGG   A +  A +A+ D    M+D             +V A + G +   P++D+ Y
Sbjct: 129 QADGGNYCACVNAATLAVIDAGIPMKD-------------YVCACTAGFIQDSPLLDISY 175

Query: 180 GEDS 183
            E+S
Sbjct: 176 VEES 179


>gi|304314830|ref|YP_003849977.1| exosome RNA binding protein [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588289|gb|ADL58664.1| predicted exosome RNA binding protein [Methanothermobacter
           marburgensis str. Marburg]
          Length = 231

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 100/240 (41%), Gaps = 23/240 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-IRNTKHGWI 59
           +R  GR  +++R + +   + + A+GS  ++FG   +L       +  +  ++      I
Sbjct: 7   VREDGRAFDELRPLRIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 66

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P S   R KR         RS EI ++   ALR  + L       I +  +V+
Sbjct: 67  RCRYNMAPFSVEER-KRPG----PDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVL 121

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           +A+GGTR A IT A VAL D    M D              V A + G +    ++DL  
Sbjct: 122 EAEGGTRCAGITAASVALADAGIPMRD-------------MVVACAAGKVNDQVVLDLSE 168

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED     D    ++  +  I  +Q        S D F   L+LA +    + ++QK+ +
Sbjct: 169 EEDKAGQADVPVAILPRTREITLLQSD---GNLSDDEFERALDLAVEGCLRIHEVQKEAL 225


>gi|291233253|ref|XP_002736568.1| PREDICTED: exosome component 4-like [Saccoglossus kowalevskii]
          Length = 246

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 19/185 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--W 58
            R  GR+ +++R+I     V + A+GS  ++ G+T +L T     ++        H    
Sbjct: 12  FRADGRRPHELRKIRCRMGVFRQADGSAYIEQGNTKVLATVYGPHEITGGRSKALHDKVL 71

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  +Y M   STG R  R     +   RSQE+   + R  ++ +        QI I   V
Sbjct: 72  LNCQYSMATFSTGERKTRP----KGDRRSQEMSMNLRRTFQAAILTHLYPRSQIDIYVQV 127

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +Q+DGG   A +  A +A+ D    M D             +V A +  +L   P+VD+ 
Sbjct: 128 LQSDGGNYCACVNAATLAVIDAGIPMRD-------------YVCACTSSLLEDTPVVDIS 174

Query: 179 YGEDS 183
           Y E+S
Sbjct: 175 YLEES 179


>gi|269986356|gb|EEZ92654.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum ARMAN-4]
 gi|326422442|gb|EGD71841.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum
           ARMAN-4_'5-way FS']
          Length = 235

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 80/194 (41%), Gaps = 28/194 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           R   R+ +++R +     +   A+GS   K G+T  +      E+V P  I     G I 
Sbjct: 5   RFDKRKFDELRPMEAETGIIPNAKGSARFKIGNTEAIAAVYGPEEVKPRHIEKVNKGIIV 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQG--GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
            +Y MLP S  +R        R G   R  EI ++I  AL   V L  +    + +   +
Sbjct: 65  CKYDMLPFSVPDR-------ARPGMDRRDIEISQVITNALNRAVILEEMPRAMVNVRIYI 117

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL- 177
            QAD GTR A++T A +A  D    M D              VAA++ G +     +DL 
Sbjct: 118 TQADAGTRCASLTAASMACADAGLPMRDL-------------VAAVAAGKIGDSICLDLT 164

Query: 178 ----DYGEDSTIDV 187
               D+ E    DV
Sbjct: 165 KEEEDFHEGGATDV 178


>gi|225715268|gb|ACO13480.1| Exosome complex exonuclease RRP41 [Esox lucius]
          Length = 245

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 94/226 (41%), Gaps = 25/226 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GWI 59
           RL GR+  ++R++     V   A+GS  ++ G+T  L       +V M    T H    I
Sbjct: 13  RLDGRKATELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRMSRSKTLHDRAVI 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
             +Y M   ST  R +R       G R S E+   + +   + V  +     QI I   +
Sbjct: 73  NCQYSMATFSTAERKRRP-----HGDRKSTEMSLHLKQTFEAAVLTNLYPRSQIDIYVKI 127

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +Q+DGG  +A +  A +A+ D    M D             +V A + G +   P+ DL 
Sbjct: 128 LQSDGGNYSACVNAATLAVIDAGIPMRD-------------YVCACTAGFVDETPLADLC 174

Query: 179 YGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           + E+S      A  ++   GHI  +Q  A      QDH   ++  A
Sbjct: 175 HAEESGGGTSLALALLPRGGHIALLQMDAR---LHQDHLETLMEAA 217


>gi|320167599|gb|EFW44498.1| exosome component 4 [Capsaspora owczarzaki ATCC 30864]
          Length = 252

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 80/188 (42%), Gaps = 26/188 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-----PMWIRNTK 55
           +R+ GR+ N++R I     V   A+GS  ++ G+T +L T     +V     P+  R   
Sbjct: 14  LRIDGRRPNELRRIQARVGVFMQADGSAYIEQGNTKILATVYGPHEVSRKNKPLHDR--- 70

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
              I  EY +   +T  R K      R   R+ ++   +  A    V        QI I 
Sbjct: 71  -AIINCEYRVASFATAERKK----PVRTDKRALDLAAAVRGAFEGAVMTQLYPRSQIDIF 125

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
             V+Q+DGG R   I  A +AL D    M+D              V A S G +   P++
Sbjct: 126 LQVLQSDGGNRAVCINAATLALMDAGIAMKD-------------FVCACSVGCIDDTPLL 172

Query: 176 DLDYGEDS 183
           D++Y EDS
Sbjct: 173 DINYIEDS 180


>gi|325959905|ref|YP_004291371.1| 3' exoribonuclease [Methanobacterium sp. AL-21]
 gi|325331337|gb|ADZ10399.1| 3' exoribonuclease [Methanobacterium sp. AL-21]
          Length = 263

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 106/247 (42%), Gaps = 22/247 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  ++ REISL   V + AEGS  VK G+T ++  A  +   P        G +  
Sbjct: 22  RTDGRAFDEYREISLEAGVIEKAEGSARVKIGNTQIIIGAKPQIGTPFG-DTPNVGVLMT 80

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +LP +  N       SG     S E+ R+  R +R   VVDL  L    G +   I 
Sbjct: 81  NTELLPMAAPN-----FESGPPDENSVELSRVTDRCIREGEVVDLEKLCIVPGEKVWMIF 135

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKF-----QLSQVLKGHVAAISCG 167
           +D  V+  DG    AA+ G+  AL +  L   +   ++       L  +     A +S  
Sbjct: 136 LDLHVVDYDGNLMDAAVLGSVAALMNTRLPEAKIIDDEVVLDYDNLIPLPINDTALMSTF 195

Query: 168 MLCGYP-IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
              G   I+D    E+  +    +  +T  G+I  +Q   E+ T +Q+     +++AK +
Sbjct: 196 AKIGEELIIDPSLEEEEVMGARLSIGITKDGNICAMQKGGEK-TLTQEEVLKAVSIAKIK 254

Query: 227 IADLIKL 233
            A+L KL
Sbjct: 255 TAELRKL 261


>gi|312137049|ref|YP_004004386.1| ribosomal RNA-processing protein rrp42 [Methanothermus fervidus DSM
           2088]
 gi|311224768|gb|ADP77624.1| ribosomal RNA-processing protein RRP42 [Methanothermus fervidus DSM
           2088]
          Length = 270

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 106/248 (42%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMWIRNTKHGWI 59
           RL GR   + R+I +   V   AEGS  VK GDT +L     T+ E  P    N   G I
Sbjct: 26  RLDGRSFYEFRDIKIKTGVISKAEGSARVKLGDTQVLVGVKPTIGEPFP---DNPNLGII 82

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQ-- 111
                +LP ++          G    RS E+ R++ R +R  +++DL  L    G +   
Sbjct: 83  ITNSELLPMASPT-----FEPGPPDERSIELARVVDRCIRESNMLDLEKLCIIEGEKVWI 137

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQH---MEDCSNKFQLSQV----LKGHVAAI 164
           + ID  ++  DG    A++ GA  AL D       +ED       S V    +K  VA  
Sbjct: 138 LFIDLHILDYDGNLFDASVLGAVAALMDTKLPKVSIEDDEVVIDDSSVELLDIKDKVAMC 197

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           +   +    ++D    E+  +    +  M   G I  +Q    + + S++     +N+A+
Sbjct: 198 TFAKIGDELVLDPSLEEEEILTARLSIGMNSEGKICAMQKGG-KGSLSREDISKAINIAE 256

Query: 225 DRIADLIK 232
           ++  +L++
Sbjct: 257 EKTPELLQ 264


>gi|255513309|gb|EET89575.1| 3' exoribonuclease [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 246

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 24/191 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           RL GR  N++R + +   +   A GS  +++G+  +L      +E  P  + +T    I 
Sbjct: 16  RLDGRDFNELRPLKIEAGILANANGSAYLEWGNNKVLAAVYGPKEATPRHLADTNKAIIK 75

Query: 61  AEYGMLPRST-GNRVKREAVSGRQGG--RSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
             Y M P S+ G+        GR G   R+ EI ++      +VV L      +I I  +
Sbjct: 76  CRYSMAPFSSMGDH-------GRSGPNRRAIEISKVTKEVFENVVMLEEFPGSEIEIFIE 128

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           ++Q+DGGTR A IT A VAL +   H++D              V A+S G +  + ++D+
Sbjct: 129 ILQSDGGTRAAGITAAAVALANAGIHVKDM-------------VYAVSAGRIDEHVVIDV 175

Query: 178 DYGEDSTIDVD 188
           +  ED+  D D
Sbjct: 176 NMIEDNYSDAD 186


>gi|15897635|ref|NP_342240.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus solfataricus
           P2]
 gi|284174961|ref|ZP_06388930.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus solfataricus
           98/2]
 gi|29337006|sp|Q9UXC0|ECX2_SULSO RecName: Full=Probable exosome complex exonuclease 2
 gi|71042716|pdb|2BR2|A Chain A, Rnase Ph Core Of The Archaeal Exosome
 gi|71042718|pdb|2BR2|C Chain C, Rnase Ph Core Of The Archaeal Exosome
 gi|71042720|pdb|2BR2|E Chain E, Rnase Ph Core Of The Archaeal Exosome
 gi|71042722|pdb|2BR2|G Chain G, Rnase Ph Core Of The Archaeal Exosome
 gi|71042724|pdb|2BR2|I Chain I, Rnase Ph Core Of The Archaeal Exosome
 gi|71042726|pdb|2BR2|K Chain K, Rnase Ph Core Of The Archaeal Exosome
 gi|71042728|pdb|2BR2|M Chain M, Rnase Ph Core Of The Archaeal Exosome
 gi|71042730|pdb|2BR2|O Chain O, Rnase Ph Core Of The Archaeal Exosome
 gi|71042732|pdb|2BR2|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome
 gi|71042734|pdb|2BR2|S Chain S, Rnase Ph Core Of The Archaeal Exosome
 gi|71042736|pdb|2BR2|U Chain U, Rnase Ph Core Of The Archaeal Exosome
 gi|71042738|pdb|2BR2|W Chain W, Rnase Ph Core Of The Archaeal Exosome
 gi|83754538|pdb|2C37|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754540|pdb|2C37|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754542|pdb|2C37|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754544|pdb|2C37|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754546|pdb|2C37|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754548|pdb|2C37|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754550|pdb|2C37|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754552|pdb|2C37|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754554|pdb|2C37|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754556|pdb|2C37|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754558|pdb|2C37|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754560|pdb|2C37|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754562|pdb|2C38|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754566|pdb|2C38|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754568|pdb|2C38|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754570|pdb|2C38|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754572|pdb|2C38|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754574|pdb|2C38|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754576|pdb|2C38|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754578|pdb|2C38|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754580|pdb|2C38|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754582|pdb|2C38|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754586|pdb|2C39|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754588|pdb|2C39|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754590|pdb|2C39|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754592|pdb|2C39|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754594|pdb|2C39|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754596|pdb|2C39|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754598|pdb|2C39|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754600|pdb|2C39|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754602|pdb|2C39|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754604|pdb|2C39|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754606|pdb|2C39|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754608|pdb|2C39|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|313507220|pdb|2C38|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|313507221|pdb|2C38|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|6015744|emb|CAB57571.1| conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|13813902|gb|AAK41030.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261602404|gb|ACX92007.1| 3' exoribonuclease [Sulfolobus solfataricus 98/2]
          Length = 275

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 96/233 (41%), Gaps = 28/233 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+    R +S+T   +K A+GS LVK G T +L    LE   P +      G + 
Sbjct: 27  IRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLI 85

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII------ 114
               +LP +           G     + E+ R++ R+LR   D  AL   +++I      
Sbjct: 86  VNVELLPLAY-----ETFEPGPPDENAIELARVVDRSLR---DSKALDLTKLVIEPGKSV 137

Query: 115 -----DCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHV 161
                D  V+   G    A    +  AL++  +  +E  SN   +++        L   V
Sbjct: 138 WTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPV 197

Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
             IS   +  Y +VD D  E+S +D   +F  T    IV +Q S + +   QD
Sbjct: 198 VTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQD 250


>gi|126031137|pdb|2JE6|A Chain A, Structure Of A 9-Subunit Archaeal Exosome
 gi|145579800|pdb|2JEA|A Chain A, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna
 gi|145579804|pdb|2JEB|A Chain A, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions
          Length = 277

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 96/233 (41%), Gaps = 28/233 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+    R +S+T   +K A+GS LVK G T +L    LE   P +      G + 
Sbjct: 29  IRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLI 87

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII------ 114
               +LP +           G     + E+ R++ R+LR   D  AL   +++I      
Sbjct: 88  VNVELLPLAY-----ETFEPGPPDENAIELARVVDRSLR---DSKALDLTKLVIEPGKSV 139

Query: 115 -----DCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHV 161
                D  V+   G    A    +  AL++  +  +E  SN   +++        L   V
Sbjct: 140 WTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPV 199

Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
             IS   +  Y +VD D  E+S +D   +F  T    IV +Q S + +   QD
Sbjct: 200 VTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQD 252


>gi|15678710|ref|NP_275826.1| exosome complex exonuclease Rrp41 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|29336573|sp|O26779|ECX1_METTH RecName: Full=Probable exosome complex exonuclease 1
 gi|295321490|pdb|2WNR|B Chain B, The Structure Of Methanothermobacter Thermautotrophicus
           Exosome Core Assembly
 gi|295321492|pdb|2WNR|D Chain D, The Structure Of Methanothermobacter Thermautotrophicus
           Exosome Core Assembly
 gi|295321494|pdb|2WNR|F Chain F, The Structure Of Methanothermobacter Thermautotrophicus
           Exosome Core Assembly
 gi|2621768|gb|AAB85188.1| ribonuclease PH [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 240

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 100/242 (41%), Gaps = 27/242 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-IRNTKHGWI 59
           +R  GR  +++R + +   + + A+GS  ++FG   +L       +  +  ++      I
Sbjct: 16  VREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 75

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGG--RSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
              Y M P S   R        R G   RS EI ++   ALR  + L       I +  +
Sbjct: 76  RCRYNMAPFSVEER-------KRPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIE 128

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V++A+GGTR A IT A VAL D    M D              V A + G +    ++DL
Sbjct: 129 VLEAEGGTRCAGITAASVALADAGIPMRD-------------MVVACAAGKVGDQVVLDL 175

Query: 178 DYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              ED     D    ++  +  I  +Q        + + F   L+LA +    + ++QK+
Sbjct: 176 SEEEDKEGQADVPVAILPRTREITLLQSD---GNLTPEEFERALDLAVEGCLRIHEVQKE 232

Query: 237 VI 238
            +
Sbjct: 233 AL 234


>gi|288560609|ref|YP_003424095.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium
           M1]
 gi|288543319|gb|ADC47203.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium
           M1]
          Length = 236

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 98/227 (43%), Gaps = 27/227 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR---NTKHG 57
           +R  GR  +++R I +   V K A+GS  ++ G   +L  A++      +IR       G
Sbjct: 11  LRGDGRAYDELRPIKIEAGVLKRADGSAYLEVGGNKIL--ASVYGPRESYIRRLLKPNTG 68

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            I   Y M P S  +R KR     R    S EI ++   ALR  + L +     + +  +
Sbjct: 69  VIRVRYNMAPFSVDDR-KRPGPDRR----STEISKIAADALRPALMLESFPRSMVDVSIE 123

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           VI+A+GGTR A IT A VAL D    M+D              V   + G +    ++DL
Sbjct: 124 VIEAEGGTRCAGITAAAVALADAGIPMKDI-------------VVGCAAGKVNDEIVLDL 170

Query: 178 DYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
              ED     D    +M  +G I  +Q        +++ F   L+LA
Sbjct: 171 SEKEDKEGQADVPIAIMPRTGEITLLQAD---GNLTEEEFEEALDLA 214


>gi|329766296|ref|ZP_08257843.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia
           SFB1]
 gi|329137198|gb|EGG41487.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia
           SFB1]
          Length = 245

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 6/127 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +R  GR+ ++ R I +     K A+GS  ++FGD  +L        V P  + NT  G +
Sbjct: 16  IRCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTDTGIL 75

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P S   R K  A S R+     EI ++I  AL   V L       + +  +V+
Sbjct: 76  RVRYHMEPFSVTER-KNPAPSRRE----IEISKVIKEALEPAVMLEKFPRTAVDVFIEVL 130

Query: 120 QADGGTR 126
           QADGGTR
Sbjct: 131 QADGGTR 137


>gi|241119397|ref|XP_002402568.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
           [Ixodes scapularis]
 gi|215493342|gb|EEC02983.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
           [Ixodes scapularis]
          Length = 246

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 80/186 (43%), Gaps = 21/186 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---HGW 58
           RL GR+ N+ R+I     V   A+GS  ++ G+  +L  A      P   R+        
Sbjct: 13  RLDGRKPNEQRKIDCRLGVFSQADGSAYIEQGNAKVLA-AVYGPHEPRGNRSRALHDRVL 71

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  ++ M   ST  R +R     R   +SQE+   I +   + +        QI I  +V
Sbjct: 72  VNCQFSMATFSTFERKRRP----RGDKKSQEMTLHIQQTFEATILTQLYPRSQIDIFVEV 127

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +Q+DGGT +  +  A +AL D                 LK +V A S G + G P+VD+ 
Sbjct: 128 LQSDGGTLSVCVNAATLALIDA-------------GIALKDYVCACSVGFIDGVPLVDIS 174

Query: 179 YGEDST 184
             E+S 
Sbjct: 175 SIEESN 180


>gi|41152247|ref|NP_957033.1| exosome complex exonuclease RRP41 [Danio rerio]
 gi|37747963|gb|AAH59525.1| Exosc4 protein [Danio rerio]
 gi|46403217|gb|AAS92628.1| exosome complex exonuclease RRP41 [Danio rerio]
 gi|157423431|gb|AAI53618.1| Exosc4 protein [Danio rerio]
          Length = 245

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 99/245 (40%), Gaps = 33/245 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55
           RL GR+  ++R++     V   A+GS  ++ G+T  L         P  IR ++      
Sbjct: 13  RLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKALAVVY----GPHEIRGSRSKSLHD 68

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIII 114
              I  +Y M   ST  R +R       G R S E+   + +   + V        QI I
Sbjct: 69  RAIINCQYSMATFSTAERKRRP-----HGDRKSSEMSLHLKQTFEAAVLTELYPRSQIDI 123

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
              ++QADGG  +A +  A +AL D    M D             +V A S G +   P+
Sbjct: 124 YVKILQADGGNYSACVNAATLALVDAGIPMRD-------------YVCACSAGFVEDTPL 170

Query: 175 VDLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
            DL + E+S      A  ++  SG+I  +Q  A      QDH   ++  A     +  K+
Sbjct: 171 ADLCHAEESGGGTALALALLPRSGNIALLQMDAR---LHQDHLDTLMEAAMTACKEFSKV 227

Query: 234 QKDVI 238
              V+
Sbjct: 228 LDSVV 232


>gi|302392342|ref|YP_003828162.1| polyribonucleotide nucleotidyltransferase [Acetohalobium arabaticum
           DSM 5501]
 gi|302204419|gb|ADL13097.1| polyribonucleotide nucleotidyltransferase [Acetohalobium arabaticum
           DSM 5501]
          Length = 708

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 112/238 (47%), Gaps = 37/238 (15%)

Query: 12  REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKHGWITAEYGM 65
           RE++L T ++++ A GS LV++G+T +L TAT+++       P+ I   +  +     G 
Sbjct: 13  RELTLETGKLAQQANGSVLVRYGETVILVTATMDDPRGMDYFPLMINYEERLY---SVGK 69

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G  +KRE   GR    +    R+I R LR +         Q+I     +  D   
Sbjct: 70  IP---GGFIKRE---GRPSEAATLTSRLIDRPLRPLFPEGMRHDVQVIATVLSVDNDNSP 123

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVD--LDYGED 182
             AA+ GA  AL               +S +  +G +  ++ G++ G  I++  ++  E+
Sbjct: 124 EVAAMIGASAAL--------------SISDIPFEGPIGGVNVGLVDGELILNPTVEEQEE 169

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           S++D+    V  +   ++ V+ +A   T  +D     ++    ++  +IKLQ+++++ 
Sbjct: 170 SSLDL---IVAGNKDGVMMVESAANEVT--EDKMIEAIDYGHQKLQGIIKLQEEMVAK 222


>gi|321465387|gb|EFX76389.1| hypothetical protein DAPPUDRAFT_213979 [Daphnia pulex]
          Length = 246

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 106/251 (42%), Gaps = 40/251 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----- 55
           +R+ GR+ N++R I  +  +   A+GS  ++ G+T +L         P  IR +K     
Sbjct: 12  LRIDGRKPNELRRIRCSLGIFSQADGSAYLEQGNTKVLAAVY----GPHEIRGSKSKALH 67

Query: 56  -HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              ++  +Y     S G R +R     R   +S E+   +     + +        QI I
Sbjct: 68  DKAFVNCQYSTATFSMGERKRRP----RGDRKSTEMSTHLEETFAAAIRTELYPRSQIDI 123

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             +V+QADGG  TA +  A +AL D                 LK  V + +  ++   P+
Sbjct: 124 FVEVLQADGGNYTACVNAAMMALVDA-------------GVPLKDTVVSCTASLVKDVPL 170

Query: 175 VDLDYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           VD+++ E S    +    ++  SG IV +  +     F  DH   +L+ A       IK 
Sbjct: 171 VDVNHVERSGGSPELVVSILPHSGEIVYMSLTQR---FHIDHLSKVLDTA-------IKG 220

Query: 234 QKDV--ISNEV 242
            KD+  I NE+
Sbjct: 221 CKDIGAILNEI 231


>gi|299689088|pdb|3L7Z|A Chain A, Crystal Structure Of The S. Solfataricus Archaeal Exosome
 gi|299689091|pdb|3L7Z|D Chain D, Crystal Structure Of The S. Solfataricus Archaeal Exosome
 gi|299689094|pdb|3L7Z|G Chain G, Crystal Structure Of The S. Solfataricus Archaeal Exosome
          Length = 271

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 96/229 (41%), Gaps = 24/229 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+    R +S+T   +K A+GS LVK G T +L    LE   P +      G + 
Sbjct: 27  IRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLI 85

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII------ 114
               +LP +           G     + E+ R++ R+LR   D  AL   +++I      
Sbjct: 86  VNVELLPLAYTT-----FEPGPPDENAIELARVVDRSLR---DSKALDLTKLVIEPGKSV 137

Query: 115 -----DCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCS-NKFQL--SQVLKGHVAAIS 165
                D  V+   G    A    +  AL++  +  +E  S NK ++     L   V  IS
Sbjct: 138 WTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQISVNKNEVVGKLPLNYPVVTIS 197

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
              +  Y +VD D  E+S +D   +F  T    IV +Q S + +   QD
Sbjct: 198 VAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQD 246


>gi|242399325|ref|YP_002994749.1| Probable exosome complex exonuclease 2 [Thermococcus sibiricus MM
           739]
 gi|242265718|gb|ACS90400.1| Probable exosome complex exonuclease 2 [Thermococcus sibiricus MM
           739]
          Length = 269

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 98/238 (41%), Gaps = 23/238 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR     R +++   V + AEGS LVK G+T +L    +E   P +      G IT 
Sbjct: 21  RIDGRGLEDFRPLTVETNVIEKAEGSALVKLGNTQVLVGIKVELGEP-FPDLPDMGVITT 79

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALG------SRQII 113
               +P ++          G     + E+ R+I R +R    +DL  L        R I 
Sbjct: 80  NVEFVPLASPT-----FEPGPPDESAIELARIIDRGIRESQAIDLEKLVIVPGKLVRVIF 134

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQLSQVLKGHVA----AIS 165
           ID  V+  DG    A+  GA  AL       + + E+      L +  K  V      ++
Sbjct: 135 IDVHVLDHDGNLLDASGIGAIAALLSTKIPKVDYNEEIEEVVMLEEYEKLPVKRIPIPVT 194

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
              + G  +VD ++ E+  +D        ++G+I  VQ S E  +F  +     ++LA
Sbjct: 195 LAKIGGNLVVDPNFEEEQVMDGKITITTDENGYISAVQKS-EGGSFKLEEVVYAVDLA 251


>gi|328769717|gb|EGF79760.1| hypothetical protein BATDEDRAFT_19845 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 253

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 24/228 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA--TLEEKVPMWIRNTKHGW 58
           +R+ GR+  ++R +     +   A+GS  ++ G+T  +       E K+    +      
Sbjct: 24  LRVDGRRPPELRRLLTKVGLFTNADGSAYIELGNTKCVAAVYGPKESKI-QSAQLHDRAV 82

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           I  EY +   S+G R     +  ++  R  EI  +I R    VV  S     +I I   +
Sbjct: 83  INVEYNVASFSSGER----KLKMKRDKRMLEIASIIKRTFEPVVMTSTFPRSEIDIYVQI 138

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +Q DGG   AAI    +A+ D    M D             +V A S G   G  ++DL+
Sbjct: 139 LQLDGGALHAAINATCLAMIDAGIPMSD-------------YVIACSAGFSNGSALLDLN 185

Query: 179 YGEDST-IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
           Y E+S  + V    ++  SG +  +   +  +    +HF  +LNLA +
Sbjct: 186 YIEESAELPVLTAALLPKSGKLTML---SMESRLHLNHFQDVLNLATE 230


>gi|302348936|ref|YP_003816574.1| Probable exosome complex exonuclease 1 [Acidilobus saccharovorans
           345-15]
 gi|302329348|gb|ADL19543.1| Probable exosome complex exonuclease 1 [Acidilobus saccharovorans
           345-15]
          Length = 242

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 21/193 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           RL GR  ++MR + +   V   A+GS +V +G T +L       E +  +        + 
Sbjct: 15  RLDGRLPDEMRPVDMKVGVLSNADGSAIVSYGKTKVLAAVYGPREPLQKYTVLPDRASLF 74

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII-IDCDVI 119
             Y M P ST  R  +  V  R   R  EI +++  AL  VV ++ L  R +I +  +V+
Sbjct: 75  VRYHMAPFSTEER--KSPVPTR---REVEISKVLREALEPVV-ITELFPRTVIEVYVEVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           Q+DGGTRTA+ T A +AL D    M             +  VA ++ G +    ++DL+ 
Sbjct: 129 QSDGGTRTASATAASLALADAGIPM-------------RALVAGVAIGKVDNVVVLDLNE 175

Query: 180 GEDSTIDVDANFV 192
            ED+  + D   V
Sbjct: 176 PEDNFGEADMPVV 188


>gi|209882995|ref|XP_002142931.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
 gi|209558537|gb|EEA08582.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
           RN66]
          Length = 250

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 10/149 (6%)

Query: 1   MRLSGRQENQMREIS--LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG- 57
            R+ GR+ N++R IS  ++   S  ++ S   + G T L+T+  +   +P+   +++ G 
Sbjct: 16  FRIDGRRFNEIRRISCKISNGTSNLSDSSVYYEQGQTKLITS--ICGPIPLLNSSSQSGI 73

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +   + M P  T +R KR    G+      E   +I R   S +    + S QIII+ +
Sbjct: 74  QLHCNFRMSPFCTPDRRKR----GKNDRFCTENSLIITRTFESAISEIYVKS-QIIININ 128

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED 146
           V++ADGG R+AAI    +AL +    M+D
Sbjct: 129 VLEADGGVRSAAINATSLALANAGIGMKD 157


>gi|167465303|ref|ZP_02330392.1| ribonuclease PH [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 71

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 36/56 (64%)

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           S   VD N VMT  GH VEVQG+ E + FS+D    ML LA++ I  LI+LQ++ +
Sbjct: 1   SQAHVDMNVVMTGRGHFVEVQGTGEESPFSKDDLDRMLGLAEEGILRLIELQREAL 56


>gi|213514504|ref|NP_001134304.1| Exosome complex exonuclease RRP41 [Salmo salar]
 gi|209732228|gb|ACI66983.1| Exosome complex exonuclease RRP41 [Salmo salar]
          Length = 245

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 99/241 (41%), Gaps = 25/241 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GWI 59
           RL GR+  ++R++     V   A+GS  ++ G+T  L       +V      T H    I
Sbjct: 13  RLDGRKAAELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRGSRSKTLHDRAVI 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
             +Y M   ST  R +R       G R S E+   + +   + V  +     QI I   +
Sbjct: 73  NCQYSMATFSTAERKRRP-----HGDRKSTEMSLHLKQTFEAAVLTNLYPRSQIDIYVKI 127

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +Q+DGG  +A +  A +A+ D    M D             +V A + G +   P+ DL 
Sbjct: 128 LQSDGGNYSACVNAATLAVVDAGIPMRD-------------YVCACTAGFVDETPLADLC 174

Query: 179 YGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           + E+S      A  ++   GHI  +Q  A      QDH   ++  A      + K+  +V
Sbjct: 175 HAEESGGGTSLALALLPRGGHIALLQMDAR---LHQDHLETLMEAAMTACKGVSKVLDEV 231

Query: 238 I 238
           +
Sbjct: 232 V 232


>gi|294668515|ref|ZP_06733612.1| tRNA nucleotidyltransferase [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291309478|gb|EFE50721.1| tRNA nucleotidyltransferase [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 65

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 38/63 (60%)

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +DY EDS  D D N VM   G I+E+QG+AE A F  D    ++ LA+  IA+L  LQ+ 
Sbjct: 1   MDYPEDSGCDSDINVVMNGEGKIIEIQGTAEGAPFDFDELAKLIKLAQKGIAELSALQQR 60

Query: 237 VIS 239
            ++
Sbjct: 61  ALA 63


>gi|298674552|ref|YP_003726302.1| 3' exoribonuclease [Methanohalobium evestigatum Z-7303]
 gi|298287540|gb|ADI73506.1| 3' exoribonuclease [Methanohalobium evestigatum Z-7303]
          Length = 260

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 98/237 (41%), Gaps = 15/237 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R  +++R+IS+   +   AEGS  V +GDT L+    L+   P +      G I  
Sbjct: 23  REDNRAFDEIRDISIETDIIGNAEGSAKVYWGDTQLIVGVKLQVGEP-FPDTPDKGIIIT 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113
              + P ++      +  +G     + EI R++ R +R    +DL+ L   +      + 
Sbjct: 82  SLELNPIAS-----PDFEAGPPKEDAIEIARVVDRGIRESGAIDLNKLCITEGEEVWTVF 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID +V+  DG    AA  GA  AL       E       +   ++     IS   + G  
Sbjct: 137 IDVNVLNDDGNIMDAASIGAIAALMTTNIPAESEGYGEDMMMPVRDIPVGISLVDISGEL 196

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           +VD  Y E+S  D     V    G I  +Q S    + +++      N+A+ R +++
Sbjct: 197 MVDPTYNEESVCDTKITVVSNQDGSISAMQKSG-TGSLTEEKVLQAANIARTRASEI 252


>gi|254168384|ref|ZP_04875229.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
 gi|197622665|gb|EDY35235.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
          Length = 208

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 10/127 (7%)

Query: 24  AEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGR 82
           A+GS  +++G   ++       E  P  ++      + A Y M P S   R        R
Sbjct: 1   ADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRAIVRARYSMAPFSVDER-------KR 53

Query: 83  QGG--RSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDC 140
            G   R+ E+ ++I  AL SV+ +       I +  +V+QAD GTR A IT A +AL D 
Sbjct: 54  PGPDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVLQADAGTRVAGITVASLALADA 113

Query: 141 LQHMEDC 147
              M D 
Sbjct: 114 GIPMRDL 120


>gi|330508837|ref|YP_004385265.1| exosome complex exonuclease 1 [Methanosaeta concilii GP-6]
 gi|328929645|gb|AEB69447.1| exosome complex exonuclease 1 [Methanosaeta concilii GP-6]
          Length = 253

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 24/237 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +RL GR+ +++R + +   +   A+GSC ++ G   ++       +V P  ++      +
Sbjct: 16  LRLDGRRADELRPVKIEVGILARADGSCYIEMGGNKVIAAVYGPREVHPRHLQEVTRAIV 75

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII-IDCDV 118
              Y M   S   R KR         RS E+ ++   AL  V+ L++   R +I +  +V
Sbjct: 76  RYRYNMASFSVEER-KRPG----PDRRSYELSKVSREALEPVI-LTSFFPRSVIDVFVEV 129

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QAD GTRTA I  A VAL                   +K  +++ + G +    ++D  
Sbjct: 130 LQADAGTRTAGINAAAVALA-------------DAGIPMKSMISSCAAGKVGDTIVLDPM 176

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
             ED+    D    MT +G I  +Q        + D F   + +A     D+ +LQ+
Sbjct: 177 KEEDNFGQADLPIAMTPNGDITLMQMD---GNLTPDEFGQAVTMAMKGAKDIYELQR 230


>gi|303281836|ref|XP_003060210.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458865|gb|EEH56162.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 245

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 98/224 (43%), Gaps = 22/224 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA-TLEEKVPMWIRNTKHGWI 59
           +RL GR+  + R++     V   A+GS   + G+T ++       E V    R+ +   I
Sbjct: 9   LRLDGRRPKETRQMRCAMGVLPAADGSAEFRAGNTRVMCAVHGPRECVNRGERDDERAII 68

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             E+     STG R  R    G+   RS E+  +I +AL + V +      +I +   V+
Sbjct: 69  KCEFSQAAFSTGERRAR----GKGDRRSVELALVIRQALEATVLVHLAPRSEINVMIQVL 124

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGG R AAI  A +A+ +    M+D              +AA S G L G P++DL+Y
Sbjct: 125 QADGGVRAAAINAAVLAIANAGIPMKDT-------------MAACSAGYLDGTPLLDLNY 171

Query: 180 GEDS----TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
            E+      + V  +    D   +V+    A    F   H  A+
Sbjct: 172 VEEGGGGVRVHVATHASRGDKVVVVQTDNKASVEVFEPVHALAV 215


>gi|313226557|emb|CBY21703.1| unnamed protein product [Oikopleura dioica]
          Length = 216

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 34/196 (17%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R  GR+  + R+I     V  +A+GS +++ G+T +L  A    + PM    ++HG ++
Sbjct: 9   FRFDGRRAAEFRKIQGRLGVFDHADGSAILQQGNTKVLA-AVFGPRQPMA---SQHGAVS 64

Query: 61  -------AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
                   EY     ++  R +R     R   ++QEI   + +   + + L+ L  R  I
Sbjct: 65  QEKCIVDVEYSRAAFASAERKRR----ARGDKKAQEISLSLKKTFEATI-LTTLYPRSAI 119

Query: 114 -IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--- 169
            I  +V+QADGG     +  A +AL D    + D                A+SCG+    
Sbjct: 120 SIFVEVLQADGGDYAVCVNAATLALIDAGIPIRDV-------------CCAVSCGVAIKD 166

Query: 170 -CGYPIVDLDYGEDST 184
              Y ++DL Y E+S 
Sbjct: 167 NVAYSLLDLAYSEESA 182


>gi|118576719|ref|YP_876462.1| RNase PH [Cenarchaeum symbiosum A]
 gi|259645399|sp|A0RXU1|ECX1_CENSY RecName: Full=Probable exosome complex exonuclease 1
 gi|118195240|gb|ABK78158.1| RNase PH [Cenarchaeum symbiosum A]
          Length = 243

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 6/127 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +R  GR+ ++ R + +T  V   A GS  ++FGD  +L        V P  +  T+ G +
Sbjct: 16  IRCDGRKISETRRVEITAGVLNNANGSAYIEFGDNKILAGIFGPRDVHPKHMVRTETGIL 75

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P S   R K+ A S R+     EI ++I  AL   + L       + +  +V+
Sbjct: 76  RCRYHMSPFSVSER-KKPAPSRRE----IEISKVIKEALEPSLMLEQFPRTAVDVFIEVL 130

Query: 120 QADGGTR 126
           QADGG+R
Sbjct: 131 QADGGSR 137


>gi|298709840|emb|CBJ26180.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 244

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 66/165 (40%), Gaps = 18/165 (10%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWITAEYGMLPRSTGNRVKREA 78
           V K A+GS  ++ G T ++       +V     R    G +  EY + P S   R KR  
Sbjct: 32  VFKGADGSAYLEMGQTKIIAIVKGPREVTRRQDRKYDTGIVNCEYNVAPFSGSERKKRRP 91

Query: 79  VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138
              R+G    EI   +       + L      QI I   VIQ+DGG     I  A +AL 
Sbjct: 92  TE-RKG---MEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVGINAASLALV 147

Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
           D    M D              V A S G L G P++DL+Y E +
Sbjct: 148 DAGVAMSDL-------------VVACSAGYLDGMPVMDLNYVEQA 179


>gi|299742531|ref|XP_001832547.2| exosome component 4 [Coprinopsis cinerea okayama7#130]
 gi|298405226|gb|EAU89296.2| exosome component 4 [Coprinopsis cinerea okayama7#130]
          Length = 263

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 99/240 (41%), Gaps = 23/240 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GW 58
            R  GR++ ++R++S+       A+GS L+  G T +L +     +  M   +T H    
Sbjct: 16  FRSDGRRQYELRDLSIDLSRHGEADGSALISHGLTQVLVSVHGPREAKMR-SHTFHDRAN 74

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           I  E  +   STG R KR  + G +  R  E    I      VV  S     QI I   +
Sbjct: 75  INVEVTVASFSTGERRKR--LKGDK--RILEFAATIKSTFEPVVRTSLYPRSQIDIYIQI 130

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +Q DGGT    I G  +AL +    M D              V AIS G+    P++DL 
Sbjct: 131 LQQDGGTLQTCINGTTLALINAGIPMSD-------------FVCAISGGVHSTSPMLDLT 177

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             E++ +      VM  S  +V V           + F  +L LA+D  A L K  K+ +
Sbjct: 178 TLEENDVPHVTVAVMPKSKKVVLVTMETR---LHVERFEEVLCLARDAAAVLHKEMKEAV 234


>gi|313240640|emb|CBY32963.1| unnamed protein product [Oikopleura dioica]
          Length = 216

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 34/196 (17%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R  GR+  + R+I     V  +A+GS +++ G+T +L  A    + PM    ++HG ++
Sbjct: 9   FRFDGRRAAEFRKIQGRLGVFDHADGSAILQQGNTKVLA-AVFGPRQPMA---SQHGAVS 64

Query: 61  -------AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
                   EY     ++  R +R     R   ++QEI   + +   + + L+ L  R  I
Sbjct: 65  QEKCIVDVEYSRAAFASAERKRR----ARGDKKAQEISLSLKKTFEATI-LTTLYPRSAI 119

Query: 114 -IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--- 169
            I  +V+QADGG     +  A +AL D    + D                A+SCG+    
Sbjct: 120 SIFVEVLQADGGDYAVCVNAATLALIDAGIPIRDV-------------CCAVSCGVAIKD 166

Query: 170 -CGYPIVDLDYGEDST 184
              Y ++DL Y E+S 
Sbjct: 167 NVAYSLLDLAYSEESA 182


>gi|213407144|ref|XP_002174343.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus
           yFS275]
 gi|212002390|gb|EEB08050.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus
           yFS275]
          Length = 243

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 73/186 (39%), Gaps = 18/186 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59
           +R  GR+ N+MRE      V K A GS  ++ G+T +L       E         +  +I
Sbjct: 13  LRQDGRRWNEMREFDCRIGVEKTAHGSSFIQHGNTRVLCNVNGPSEPYIKGKSKQEKAFI 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             E    P S  +R KR     R   R QE    I R     + +      QI I  +V+
Sbjct: 73  NVELNFAPFSLIDRKKRH----RSDKRIQEQCVAIQRTFEQAIQVELYPKSQISISLNVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           + DGG     I  A +AL D    M D             +V   + G+     ++DL+ 
Sbjct: 129 EDDGGAIATCINAATLALIDAGIAMVD-------------YVCCATAGIYETQVLLDLNT 175

Query: 180 GEDSTI 185
            E+S I
Sbjct: 176 NEESDI 181


>gi|147919674|ref|YP_686582.1| exosome complex RNA-binding protein Rrp42 [uncultured methanogenic
           archaeon RC-I]
 gi|121687882|sp|Q0W2Y7|ECX2_UNCMA RecName: Full=Probable exosome complex exonuclease 2
 gi|110621978|emb|CAJ37256.1| putative exosome complex exonuclease 2 [uncultured methanogenic
           archaeon RC-I]
          Length = 260

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 102/237 (43%), Gaps = 23/237 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ ++ R IS+   V   AEGS  VK GD+ ++    ++   P +      G I  
Sbjct: 23  RADGRKFDEFRAISVETGVINKAEGSARVKIGDSQVVVGVKIQPGEP-FPDTPDSGVIIT 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSR--QII 113
              ++P ++         SG     + E+ R++ R +R    +DLS L    G +   + 
Sbjct: 82  NLELVPLASPT-----FESGPPREDAIELARVVDRGVRESGAIDLSKLCIESGQKVWMVF 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM----L 169
           ID  V+  DG    AA  GA  A    L+  +  ++KF L + +K  +  +  G+    +
Sbjct: 137 IDVHVLDHDGNLMDAASLGAIAA----LKATKIPNSKFGLGEDVKLPLNDVPIGVTAVNI 192

Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            G  ++D    E+S        +    G I  +Q S    T + D    ++ LAK++
Sbjct: 193 GGAIMLDPSLDEESVAPCKLTVITNKEGAISGMQKSG-VGTLTPDQINHIIRLAKEK 248


>gi|328865596|gb|EGG13982.1| Exosome complex exonuclease rrp41 [Dictyostelium fasciculatum]
          Length = 244

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 108/251 (43%), Gaps = 29/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR+ N++R +++   V   A+GS   + G+T +        +            I 
Sbjct: 12  LRIDGRRSNEIRRLNMRMGVLNRADGSSYYEQGNTKITVAIYGPHESTTQKSLFDRASIK 71

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            E+ M   ST  R     V  R    + E   +I +A  S V        QI I   V+Q
Sbjct: 72  CEFAMSSFSTSER----KVKSRFDKTAYETSTLIKQAFESTVLTHLFPRSQIDIYVQVLQ 127

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           +DGG ++AAI    +A+ D    M D             +V A S   + G  ++DL++ 
Sbjct: 128 SDGGLKSAAINAVTLAMIDAGIPMRD-------------YVCACSATFIEGSALMDLNHM 174

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK---DRIADLIKLQ-- 234
           E+ +   D    +    G ++ +   ++     Q+ F ++L++A     +I  L++ Q  
Sbjct: 175 EERSGGADLLLSIHPQLGGVISINMESK---VPQEMFESVLDMALAGCKKIYYLLQEQVK 231

Query: 235 ---KDVISNEV 242
              KD++SN++
Sbjct: 232 KHSKDLMSNQL 242


>gi|302829841|ref|XP_002946487.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f.
           nagariensis]
 gi|300268233|gb|EFJ52414.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f.
           nagariensis]
          Length = 245

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 93/227 (40%), Gaps = 22/227 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+  ++R I+    V   A+GS + + G+T +L        V       +   I 
Sbjct: 9   LRLDGRRPRELRRINCQLDVLSSADGSAIFEMGNTKVLAAVFGPHAVTKRADLREDAAIV 68

Query: 61  A-EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             EY M   STG R +R     R    S E+  +I   L   +    +   QI +   V+
Sbjct: 69  VCEYSMAAFSTGERRRRGKGDRR----STELSMVIRNTLEQAILRELMPRSQIDVYVQVL 124

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTR             C                L+  VA+ + G L G P++DL++
Sbjct: 125 QADGGTR-------------CAAINAAVLALAAAGVPLRDLVASCAAGYLDGTPLLDLNF 171

Query: 180 GEDSTIDVDANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
            EDS    D    +    G +V VQ          D F A+L+LA+D
Sbjct: 172 TEDSGGGPDLAVALAPREGLLVLVQMDNR---LPVDTFQAVLDLARD 215


>gi|257096723|sp|B3DZ86|PNP_METI4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 707

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 97/227 (42%), Gaps = 30/227 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           T +++K+A+GS  V +G+T +L TA     L+E         ++    A  G  P   G 
Sbjct: 18  TGKLAKFADGSVTVSYGETAVLVTAVSVTELKEDQDFLPLQVEYREKAAAAGRFP---GG 74

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
             ++E   GR   +     RMI R LR +         QI+    ++ ADG       AI
Sbjct: 75  YFRKE---GRPTDKEILTSRMIDRPLRPLFPKGYFYETQIL--GTLLSADGQNDPDVMAI 129

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  AL      + D            G V A+  G + G  I++  + E    D+D  
Sbjct: 130 NGASAAL-----MVSDIP--------FYGPVGAVRIGQIDGRWIINPTHREREISDIDLV 176

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +V ++  + + ++GSA    F ++ F   L  A   + ++I  QK++
Sbjct: 177 YVGSEH-YPLMIEGSARE--FPEEEFVKALEFAHQHVQEVIAAQKEL 220



 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 67/175 (38%), Gaps = 22/175 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R  GR    +R I++   V   + GS L   G+T  L  ATL      +++  +    + 
Sbjct: 313 RCDGRGPEDIRPIAIETSVVPRSHGSSLFCRGETQALCMATLASLNEAQELDAYGGGEQS 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +    S R+ G     +R +   + S  D        I +  
Sbjct: 373 KRFLLHYFFPPFSVGEVGRITGQSRREIGHGALAERSLLPVIPSETDF----PYAIRVSS 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
           ++++++G T  A + G  +AL D                 LK  VA IS G++ G
Sbjct: 429 EILESNGSTSMATVCGGSLALMDA-------------GVPLKTSVAGISVGLVKG 470


>gi|156937005|ref|YP_001434801.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis
           KIN4/I]
 gi|156565989|gb|ABU81394.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis
           KIN4/I]
          Length = 241

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 107/245 (43%), Gaps = 29/245 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWIT 60
           R  GR    +R + +   V   A+GS  ++ G T ++       + PM  +       I 
Sbjct: 15  RHDGRGPADLRPLEMKVGVLYNADGSAWLRIGGTEVVAAVYGPREPPMRGMVLPDRAVIR 74

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII-IDCDVI 119
             Y M P ST  R K  A S R+     E+ ++I  AL + + L+ L  R II +  +VI
Sbjct: 75  CRYHMAPFSTDER-KNPAPSRRE----IELSKVIREALEATI-LTHLFPRTIIDVFIEVI 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           +ADGGTRTAA+T                         +KG VA ++ G + G  ++D+D 
Sbjct: 129 RADGGTRTAALT-------------AASLALADAGIPMKGLVAGVAVGKVQGTLVLDIDE 175

Query: 180 GEDSTIDVDANFVMTDSGH---IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            ED   + D       S +   ++++ G  E   F Q      L LA + I  +  +QK 
Sbjct: 176 LEDMYGEADMPVAAIPSLNKIVLLQLNGVLEPREFPQ-----ALKLAWEGIKKIHAMQKK 230

Query: 237 VISNE 241
           V++ +
Sbjct: 231 VLAEK 235


>gi|148228965|ref|NP_001088679.1| exosome component 4 [Xenopus laevis]
 gi|56270437|gb|AAH87307.1| LOC495942 protein [Xenopus laevis]
          Length = 249

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 29/190 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L         P  IR ++      
Sbjct: 13  RVDGRKAGELRKIRARMGVFAQADGSAYIEQGNTKALAVV----YGPHEIRGSRSKMLHD 68

Query: 59  ---ITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIII 114
              I  +Y M   STG R +R       G R S E+   + +   + +        QI I
Sbjct: 69  RCVINCQYSMATFSTGERKRRP-----HGDRKSSEMTLHLKQTFEAAILTQLYPRSQIDI 123

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
              ++QADGG     +  A +A+ D    M D             +V A S G +   P+
Sbjct: 124 YVQILQADGGNYCTCVNAATLAVIDAGIPMRD-------------YVCACSAGFIEDTPL 170

Query: 175 VDLDYGEDST 184
            DL Y E++T
Sbjct: 171 ADLSYVEEAT 180


>gi|242005051|ref|XP_002423388.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus
           corporis]
 gi|212506432|gb|EEB10650.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus
           corporis]
          Length = 253

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 95/229 (41%), Gaps = 29/229 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-----PMWIRNTK 55
           +RL GR+ +++R+I     V    +GS  ++ G+T +L       +V     P+      
Sbjct: 10  LRLDGRRASELRQIRCKLGVFSQPDGSAYIEMGNTKVLAAVYGPHQVRGRTKPLL----D 65

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
              I  +Y     ST  R KR     R   +SQE    + +AL + +        QI I 
Sbjct: 66  AAVINCQYSSAVFSTEERKKRP----RGDKKSQEKSMHLCQALSAAIKTELYPKSQIDIF 121

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPI 174
            +V+Q+DGG+ +AA+  + +AL D                 LK +V + +  +     P+
Sbjct: 122 VEVLQSDGGSFSAAVNVSTLALIDA-------------GIPLKEYVTSCTASLANENIPL 168

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           VD+ Y E+S                + +   ++R  F  DH   +LN A
Sbjct: 169 VDVTYLEESCGGPTLTIATLPLAKKIALMEMSQR--FHLDHLEKVLNTA 215


>gi|294495472|ref|YP_003541965.1| ribosomal RNA-processing protein RRP42 [Methanohalophilus mahii DSM
           5219]
 gi|292666471|gb|ADE36320.1| ribosomal RNA-processing protein RRP42 [Methanohalophilus mahii DSM
           5219]
          Length = 261

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 97/233 (41%), Gaps = 15/233 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ N++R+I+L   +   AEGS +V++GDT ++    ++   P +  +   G I  
Sbjct: 24  REDGRQFNELRDIALETGIIDKAEGSAMVQYGDTQVMVGVKMQVGTP-FPDSPAEGVIIT 82

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113
              + P ++ +    EA   R+  ++ E+ R++ R +R    +D++ L   +      + 
Sbjct: 83  SMELNPIASPD---FEAGPPRE--KAIEMGRIVDRGIRESGAIDINKLCITEGEEVWMVF 137

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID  V+   G    AA  GA  AL       E           ++     +S   +    
Sbjct: 138 IDVHVLNNSGNILDAASLGAIAALMTTTVPSEREGKGEDYPMPVREMPVGVSLVKIGDEM 197

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           ++D  YGE+S  +          G I  +Q S    + S         +AK++
Sbjct: 198 VLDPTYGEESVCETRITISSNQDGSICSMQKSG-SGSLSPAQVVKASKIAKEK 249


>gi|47848476|dbj|BAD22331.1| putative exosome component 4 [Oryza sativa Japonica Group]
 gi|47848647|dbj|BAD22495.1| putative exosome component 4 [Oryza sativa Japonica Group]
          Length = 245

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 100/246 (40%), Gaps = 53/246 (21%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWI----- 51
            R+ GR+ N+MR++     V   A+GS L + G+T ++       +V      W+     
Sbjct: 10  FRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVAAHPDYWLVRLIS 69

Query: 52  -----------RNTKHGWITAE-YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR 99
                        TK    TA+   M   STG+R +R+    R   RS EI  +I + + 
Sbjct: 70  KKAKREGLRGRSRTKVSKSTAKMLWMADFSTGDR-RRKPKGDR---RSTEISLVIRQTME 125

Query: 100 SVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG 159
           + +    +   QI I   V+QADGGTR A I  A +AL D    M D             
Sbjct: 126 ASILTHLMPRSQIDIFVQVLQADGGTRAACINAATLALADAGIPMRDI------------ 173

Query: 160 HVAAISCGMLCGYPIVDLDYGEDST--IDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
                SC         DL+Y EDS    DV   F +T    +  +Q  A+      D F 
Sbjct: 174 ---VTSCS-------ADLNYIEDSAGGPDVTVGF-LTKMDKVTLLQMDAK---LPMDTFE 219

Query: 218 AMLNLA 223
            +++LA
Sbjct: 220 TVMDLA 225


>gi|328777661|ref|XP_003249381.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1 [Apis
           mellifera]
          Length = 284

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 104/246 (42%), Gaps = 59/246 (23%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------ 54
           +RL GR+  ++R+I +   V   A+GS  ++ G+T +L T       P   RN+      
Sbjct: 29  LRLDGRRALELRQIRIKMGVFGQADGSAYIEHGNTKILVTVY----GPHQPRNSTGRSTS 84

Query: 55  --KHGWITAEYGM--LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110
               G +  +Y M     S+G R KR+    R   +SQE    +  A+ +++ L      
Sbjct: 85  KITKGIVNCQYSMAVFSLSSGER-KRKPRGDR---KSQERSLQLKHAMEAIIHLELYPRS 140

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-L 169
           QI I  + +Q DG    A++  A +AL D    +++                AI C + L
Sbjct: 141 QIDIYVEALQVDGSEYCASVNAATLALIDAGIPIKN---------------YAIGCTVTL 185

Query: 170 CGYPIVDLDYGEDSTID---VDANFV-------------------MTDSGHIVEVQGSAE 207
              P ++    ED+T++   +DAN+V                   ++  G IV  QG+ +
Sbjct: 186 INCPSLE---DEDNTLEKGVLDANYVEECAPGVTLSVVALPNSDGISKDGLIVVAQGAGQ 242

Query: 208 RATFSQ 213
           R   SQ
Sbjct: 243 RLHLSQ 248


>gi|159474468|ref|XP_001695347.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
           reinhardtii]
 gi|158275830|gb|EDP01605.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
           reinhardtii]
          Length = 245

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 93/229 (40%), Gaps = 26/229 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG-WI 59
           +RL GR+  ++R I+    V   A+GS + + G+T +L        V       + G  +
Sbjct: 9   LRLDGRRPRELRRINCQLDVLSNADGSAIFEMGNTKVLAAVFGPHAVTRRSELREEGALV 68

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             EY M   STG R +R     R    S E+  +I   L   V    L   QI +   V+
Sbjct: 69  VCEYSMAAFSTGERRRRGKGDRR----STELSMVIRNTLEQAVITELLPRSQIDVYVQVL 124

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTR             C                L+  VA  + G L G  ++DL+Y
Sbjct: 125 QADGGTR-------------CAAINAAVLALAAAGVPLRDLVAGCAAGYLDGTALLDLNY 171

Query: 180 GEDSTIDVDANFVMT---DSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
            EDS    D    +    DS ++V++           D F A++ LA++
Sbjct: 172 TEDSGGGPDLCVALAPRLDSLYLVQMDNR-----LPVDTFQAVMELARE 215


>gi|315229928|ref|YP_004070364.1| exosome complex exonuclease 2 [Thermococcus barophilus MP]
 gi|315182956|gb|ADT83141.1| exosome complex exonuclease 2 [Thermococcus barophilus MP]
          Length = 270

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 97/238 (40%), Gaps = 23/238 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R + +   V + AEGS  VK G+T +L    L+   P      K G +T 
Sbjct: 21  RIDGRSLEDLRPLEVKVNVIEKAEGSAWVKLGNTQVLVGIKLDLGEPFPDLPDK-GVMTT 79

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALG------SRQII 113
              ++P ++          G    R+ E+ R++ R +R    +DL  L        R + 
Sbjct: 80  NVELVPLASPT-----FEPGPPDERAIELARVVDRGIRESQAIDLEKLVIIPGKLVRVVF 134

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQLSQVLKGHVAAI----S 165
           ID  V+  DG    A   GA  AL       +++ E+      L +     V  I    S
Sbjct: 135 IDVHVLDHDGNLVDATGIGAIAALLSTKMPKIEYNEETGEVMMLDEYEPLPVTKIPIPVS 194

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
              + G  +VD +  E+  +D        ++G+I  VQ S E  +F  +     +++A
Sbjct: 195 FAKIGGTIVVDPNLEEEHVMDGKLTITTDENGYISAVQKS-EGGSFKLEEVMYAVDVA 251


>gi|288930698|ref|YP_003434758.1| 3' exoribonuclease [Ferroglobus placidus DSM 10642]
 gi|288892946|gb|ADC64483.1| 3' exoribonuclease [Ferroglobus placidus DSM 10642]
          Length = 259

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 109/249 (43%), Gaps = 25/249 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +++R+I +   V + AEGS LVK G+T +L    ++   P      K G I  
Sbjct: 23  RIDGRKFDEIRKIEIQTGVIEKAEGSALVKLGNTQVLVGVKMQPGEPFPDAPNK-GIIIT 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------II 113
              ++P ++          G     + E+ R++ R +R    VDL  L   +      I 
Sbjct: 82  NAELVPLASPT-----FEPGPPDENAIELARVVDRGIRESEAVDLEKLCIEEGEKVWLIF 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHME--DCSNKFQLSQVLKGHVAAISCGMLCG 171
           ID   +  DG    A+  GA  AL +     E  +  + F L   ++    AI+  ++  
Sbjct: 137 IDIWALDDDGNLLDASALGAIAALLNTTVPAERFEVGDDFPLP--VRDLPVAITSLIVEN 194

Query: 172 YPIVDLDYGEDSTIDVDANF--VMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
             +VD    E S   V  NF  + TDS  +IV +Q S       ++ F+  + L+  +  
Sbjct: 195 KILVDPIKDETS---VAKNFLTITTDSEDNIVAIQKSGSY-LLPEEKFYEAIELSIRKAR 250

Query: 229 DLIKLQKDV 237
           ++ KL  +V
Sbjct: 251 EVRKLLAEV 259


>gi|307174738|gb|EFN65093.1| Exosome complex exonuclease RRP41 [Camponotus floridanus]
          Length = 274

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 7/142 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWI 59
           +R  GR+  ++R+I L   V   A+GS  ++ G+T +L       +    I RN+   ++
Sbjct: 13  LRSDGRRALELRQIRLRMGVFGQADGSAYIEHGNTKVLAAVYGPHQPKSNISRNSTKAFV 72

Query: 60  TAEYGM--LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
             +Y M     ++G R +R     R   +SQE    +  A+ +++ L      QI I  +
Sbjct: 73  NCQYSMAVFSFTSGERKRRP----RGDWKSQERSAQLRHAMEAIIHLELYPRSQIDIFVE 128

Query: 118 VIQADGGTRTAAITGAWVALHD 139
           V+Q DG    A++  + +AL D
Sbjct: 129 VLQVDGSDYCASVNASTLALID 150


>gi|330508838|ref|YP_004385266.1| exosome complex exonuclease 2 [Methanosaeta concilii GP-6]
 gi|328929646|gb|AEB69448.1| exosome complex exonuclease 2 [Methanosaeta concilii GP-6]
          Length = 258

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 14/144 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q REIS+ R V + AEGS LVK G + +L    ++   P    +   G I  
Sbjct: 22  RIDGRKFDQYREISIERDVIRKAEGSALVKLGSSQVLVGVKMQPGEPFQ-DSPNRGVIIT 80

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQ--II 113
              ++P ++ +        G       E+ R++ R +R    VDL AL    G +   + 
Sbjct: 81  NAELVPLASPS-----FEPGPPNEVGIELARLVDRGVRESKAVDLEALCIEPGKKVWIVF 135

Query: 114 IDCDVIQADGGTRTAAITGAWVAL 137
           ID  ++   G    AA  GA  AL
Sbjct: 136 IDVHILDDCGNILDAASLGAISAL 159


>gi|41615042|ref|NP_963540.1| exosome complex exonuclease Rrp41 [Nanoarchaeum equitans Kin4-M]
 gi|40068766|gb|AAR39101.1| NEQ248 [Nanoarchaeum equitans Kin4-M]
          Length = 233

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 103/261 (39%), Gaps = 52/261 (19%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR  N++R+  +   V   A+GS   + G+T  +    L+          +   + 
Sbjct: 1   MRFDGRDYNEIRDTEMKIGVISKADGSAYCRTGNTIAIAAVYLKP-------GREQSNLK 53

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y MLP + G   K   ++ R+     E+  +I +AL   +    +    I    ++I+
Sbjct: 54  VSYRMLPFA-GEERKGLGLTRRE----IELSYIIAKALEPAIIFEEIPYLTIEASVEIIK 108

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD-- 178
           AD GTR AAI    +AL      M             K  V AI+ G +    ++DL+  
Sbjct: 109 ADAGTRVAAINALSLALAHAGIPM-------------KALVGAIAVGKVGEKIVLDLNKQ 155

Query: 179 -------------------YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
                              YGE   +D+    +  +   ++++ GS +R +  +      
Sbjct: 156 EEDYDSEIIKKELPQYYEYYGEGKAVDIPMA-MYKNKITLLQLDGSIDRKSLLE-----A 209

Query: 220 LNLAKDRIADLIKLQKDVISN 240
           + L KD I  +I LQK  I +
Sbjct: 210 IKLGKDGIKRMIDLQKIAIED 230


>gi|62858329|ref|NP_001016436.1| exosome component 4 [Xenopus (Silurana) tropicalis]
 gi|89273823|emb|CAJ82158.1| exosome component 4 [Xenopus (Silurana) tropicalis]
 gi|111598409|gb|AAH80330.1| LOC549190 protein [Xenopus (Silurana) tropicalis]
          Length = 249

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 29/189 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L         P  IR ++      
Sbjct: 13  RVDGRKAGELRKIRARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRSKMLHD 68

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIII 114
              +  +Y M   STG R +R       G R S E+   + +   + +        QI I
Sbjct: 69  RSVVNCQYSMATFSTGERKRRP-----HGDRKSSEMTLHLKQTFEAAILTQLYPRSQIDI 123

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
              ++QADGG     +  A +A+ D    M D             +V A S G +   P+
Sbjct: 124 YVQILQADGGNYCTCVNAATLAVIDAGIPMRD-------------YVCASSAGFIEDTPL 170

Query: 175 VDLDYGEDS 183
            DL Y E++
Sbjct: 171 ADLSYVEEA 179


>gi|315427142|dbj|BAJ48757.1| exosome complex component RRP42 [Candidatus Caldiarchaeum
           subterraneum]
 gi|315427161|dbj|BAJ48775.1| exosome complex component RRP42 [Candidatus Caldiarchaeum
           subterraneum]
          Length = 271

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 23/172 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+  R+  Q R+I +   V + A GS LV  G T +LT   +E   P +      G  T 
Sbjct: 24  RIDEREPLQYRKIEIATNVVEKAHGSALVSLGKTKILTGIKVEVGTP-YPDRPNEGVFTV 82

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +LP ++     +    G    R+ E+ R++ R +R    +++  L    G +   I 
Sbjct: 83  NAELLPLAS-----KTFEPGPPDERAIELSRIVDRVIRESKAIEVEKLCIVEGQKVYMIF 137

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS 165
           IDC V+  DG    A++  A  AL          +    + +V+ G V A+ 
Sbjct: 138 IDCYVLDYDGNYFDASVLSAVAALR---------TMTLPVYRVVDGRVEAVP 180


>gi|194761146|ref|XP_001962793.1| GF15621 [Drosophila ananassae]
 gi|190616490|gb|EDV32014.1| GF15621 [Drosophila ananassae]
          Length = 249

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 7/147 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ +++R I     V +  +GS  ++ G+T +L       +       +    I 
Sbjct: 13  LRLDGRRPHELRHIQCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTESNDVIIN 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y     ST  R  R     R   +SQE +  + +AL + +        QI +  +V+Q
Sbjct: 73  CQYSQATFSTAERKNRP----RGDRKSQEFKMYLQQALSAAIKSELYPRSQIDVYVEVLQ 128

Query: 121 ADGGTRTAAITGAWVALHD---CLQHM 144
           ADG     A+  A +AL D   CL  +
Sbjct: 129 ADGANYAVALNAATLALIDAGICLNEL 155


>gi|332017939|gb|EGI58588.1| Exosome complex exonuclease RRP41 [Acromyrmex echinatior]
          Length = 272

 Score = 48.5 bits (114), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 97/209 (46%), Gaps = 10/209 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59
           +R+ GR+  ++R+I +   V   A+GS  ++ G+T +L       +      RN+    I
Sbjct: 12  LRIDGRRALELRQIRMRMGVFGQADGSAYIEHGNTKVLAAVYGPRQSRSSASRNSTKAII 71

Query: 60  TAEYGM--LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
             +Y M     ++G R +R     R   +SQE    +  A+ +++ L      QI +  +
Sbjct: 72  NCQYSMAVFSFTSGERKRRP----RGDWKSQERSAQLRHAMEAIIHLELYPRSQIDVFVE 127

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+Q DG    A++  A +AL D    +++ +    ++ V K  V      +  G  ++D 
Sbjct: 128 VLQVDGSDYCASVNAATLALIDAGIPIKNYAIGCSVTLVNKPSVEDEDKTLATG--VLDA 185

Query: 178 DYGEDSTIDVDANFV-MTDSGHIVEVQGS 205
           +Y E+ +  V  + V +  + + +EV G+
Sbjct: 186 NYVEECSPGVTLSVVALAGTNNDIEVDGN 214


>gi|308512717|gb|ADO33012.1| exosome complex exonuclease RRP41 [Biston betularia]
          Length = 245

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 6/140 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ N++R I     V K  +GS  ++ G+T +L       +      + +   + 
Sbjct: 8   LRLDGRRPNELRRIRCKLGVFKQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSNEGVVVN 67

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
            +Y M   STG R  R       G R S E+   + +AL + +        QI +  +V+
Sbjct: 68  CQYSMATFSTGERKNRP-----HGDRKSTEMSLHLRQALTAAIKTELYPRSQIDVYVEVL 122

Query: 120 QADGGTRTAAITGAWVALHD 139
           QADG      +  A +AL D
Sbjct: 123 QADGSCYCVCVNAATLALID 142


>gi|52549527|gb|AAU83376.1| 3'-5' exoribonuclease [uncultured archaeon GZfos27G5]
          Length = 257

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 14/144 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  ++ R+IS+ R V K AEGS  VK GDT +L    +E   P +      G I  
Sbjct: 23  REDGRGFHEYRDISVERDVIKRAEGSARVKIGDTEVLVGVKVELGTP-FPDTPDKGVIIT 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              ++P ++    K E  SG     S ++ R++ R +R    +DL  L    G +   + 
Sbjct: 82  NAELVPLAS---PKFE--SGPPNENSIQLARVVDRGIRGSETIDLDKLCIEEGEKVWMVF 136

Query: 114 IDCDVIQADGGTRTAAITGAWVAL 137
           ID  V+  +G    AA  GA  +L
Sbjct: 137 IDIHVLDDNGNLVDAAALGAITSL 160


>gi|149430580|ref|XP_001515504.1| PREDICTED: similar to Chain C, Structure Of The Human Rna Exosome
           Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42,
           Csl4, Rrp4, And Rrp40 [Ornithorhynchus anatinus]
          Length = 245

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 29/190 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L         P  +R  +      
Sbjct: 13  RVDGRRAGELRKIEARMGVFAQADGSAYIEQGNTKALAVVY----GPHEMRGLRSRALPD 68

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR-QIII 114
              +  ++ M   STG R +R     +    SQ +Q+    A+     L+ L  R QI I
Sbjct: 69  RALVNCQFSMATFSTGERKRRPHGDRKATEMSQHLQQTFEDAI-----LTQLYPRSQIDI 123

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
              ++QADGG   A +  A +A+ D                 L+  V A S G +   P+
Sbjct: 124 YVQILQADGGNYAACVNAATLAVLDA-------------GIPLRDFVCASSAGFVEDTPL 170

Query: 175 VDLDYGEDST 184
            DL Y E++ 
Sbjct: 171 ADLSYVEEAA 180


>gi|307104174|gb|EFN52429.1| hypothetical protein CHLNCDRAFT_12102 [Chlorella variabilis]
          Length = 241

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 80/184 (43%), Gaps = 18/184 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59
           +RL GR+  ++R++     V   A+GS L + G+T +L      + V    + + +   +
Sbjct: 8   LRLDGRRPKELRQLRAELGVLSSADGSALFEMGNTRVLAAVFGPKPVEQRSQEDERRAIV 67

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             EY M   STG R +R     R    + EI   I   +   +    L   QI I   V+
Sbjct: 68  KCEYAMASFSTGERRRRGKADRR----ATEIGMAIRNTMEQTILTELLPRSQIDIYVQVL 123

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTR A I  A +A       M D              VA+ + G L    ++DL+Y
Sbjct: 124 QADGGTRCACINAACMAAAAAAIPMRDL-------------VASCAAGYLESTALLDLNY 170

Query: 180 GEDS 183
            EDS
Sbjct: 171 MEDS 174


>gi|332376931|gb|AEE63605.1| unknown [Dendroctonus ponderosae]
          Length = 269

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 5/126 (3%)

Query: 12  REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           R+I L   V   A+GS  ++ GDT ++ +     ++P  I     G +  E+   P S  
Sbjct: 47  RKIYLQTGVITQAKGSAYIEIGDTKVIVSVFDPREIPNRIDYGLKGEVYCEFKYAPFSCK 106

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
            R+  +     Q    ++   ++ +AL S V L  L + Q+ +   V++ DG   +AAI 
Sbjct: 107 KRMMHQ-----QNNEEKQSSDIMRKALESTVCLHELPNFQVDVYAMVLEEDGSALSAAII 161

Query: 132 GAWVAL 137
              VAL
Sbjct: 162 AGGVAL 167


>gi|145592135|ref|YP_001154137.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum arsenaticum
           DSM 13514]
 gi|145283903|gb|ABP51485.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum arsenaticum DSM
           13514]
          Length = 276

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 102/251 (40%), Gaps = 29/251 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q REI +   V K A+GS  VK G TH++    +    P +      G +  
Sbjct: 29  RVDGRALDQTREIEIKTGVVKTADGSAEVKLGKTHVIAGVKVGLGQP-FPDAPDEGVLVV 87

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL---GSRQII--I 114
              +LP ++          G     + E+ R++ R +R    VD   L   G +  +  +
Sbjct: 88  SAEVLPHASPY-----TEVGPPDESAIELARVVDRGIRHCGYVDFKKLAVEGGKAYVLWV 142

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHME----------DCSNKFQLSQVLKGHVAAI 164
           D  VI  DG    AA   +  AL +                D +NK  L         A+
Sbjct: 143 DLYVINDDGNLVDAANLASVAALKNTQLPAVVKDESGAVKLDRNNKSPLPLETSKVPVAV 202

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA- 223
           S G +     +D ++ E+ ++D    F +++   IV  Q +     F+Q    A L+LA 
Sbjct: 203 SVGKIANVLFLDPNFEEELSLDGRVTFTISED-RIVAAQKTL--GYFTQPELEAALDLAI 259

Query: 224 --KDRIADLIK 232
             +DR  + +K
Sbjct: 260 KGRDRYLEALK 270


>gi|48477465|ref|YP_023171.1| exosome complex RNA-binding protein Rrp42 [Picrophilus torridus DSM
           9790]
 gi|48430113|gb|AAT42978.1| ribonuclease PH [Picrophilus torridus DSM 9790]
          Length = 260

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 87/211 (41%), Gaps = 17/211 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR  N  R+I +       A GS +V+ G T ++    +EE  P +      G +  
Sbjct: 26  RLDGRGLNDFRDIKIFENYIPKASGSAMVELGRTKVVAGVKIEEGEP-FPDTPDQGVMAL 84

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              MLP +          +G  G  + E  R++ R +R   ++D++ L    G++   + 
Sbjct: 85  NIEMLPMAFPT-----FEAGPPGEEAIEYSRVVDRGIRESKMIDVTRLVIEPGTKVWMVF 139

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK-FQLSQVLKGHVAAISCGMLCGY 172
           ID D+I   G    A+   A  AL + +        + F+L   +  +  +++   +   
Sbjct: 140 IDIDIINYAGNIIDASTIAAVAALRNAIVPASRIGGEDFKLP--VNANPVSVTMAKIGDE 197

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ 203
            ++D D  E+   +      M +  HI  +Q
Sbjct: 198 LVIDPDLEEEQVSNGRITITMAEDDHIHAIQ 228


>gi|307214803|gb|EFN89690.1| Exosome complex exonuclease RRP41 [Harpegnathos saltator]
          Length = 271

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 7/143 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWI 59
           +R+ GR+  ++R+I +   V   A+GS  ++ G+T +L       +    I +NT    +
Sbjct: 13  LRVDGRRALELRQIRIRMGVFGQADGSAYIEHGNTKVLAAVYGPHQPRNNIAKNTTKAIV 72

Query: 60  TAEYGM--LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
             +Y M     ++G R +R     R   +SQE    +  A+ +++ L      QI I  +
Sbjct: 73  NCQYSMAVFSFTSGERKRRP----RGDWKSQERSIQLRHAMEAIIHLELYPRSQIDIFVE 128

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           ++Q DG    A++  A +AL D 
Sbjct: 129 ILQVDGSDYCASVNAATLALIDA 151


>gi|170586916|ref|XP_001898225.1| Putative exosome complex exonuclease RRP41 [Brugia malayi]
 gi|158594620|gb|EDP33204.1| Putative exosome complex exonuclease RRP41, putative [Brugia
           malayi]
          Length = 249

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 93/228 (40%), Gaps = 36/228 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT--ATLEEKVPMWIRNTKHGW 58
            R  GR+ +Q+R ++    V   A+GS  ++ G+T +L       E K    +   +   
Sbjct: 9   FRQDGRKPHQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQRSRLLEDR-CI 67

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           I  +Y M   ST  R +R     R   RS E  R++ +A    +        QI + C++
Sbjct: 68  INCQYSMATFSTNERKERP----RGDRRSLEFARLMEKAFEEAILTENYPRSQIDVFCEL 123

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDL 177
           +QADG    A +    +AL D    M             +G VAA SC     G   VD+
Sbjct: 124 LQADGSHLAACVNVGTLALADAGVPM-------------RGLVAAASCACAPGGLACVDV 170

Query: 178 DYGED---------STIDVDANFVMTD------SGHIVEVQGSAERAT 210
           +  E+         +TI      VM +        H++ + G+A +AT
Sbjct: 171 NSREEMGIVPRLTVATISGQDAVVMAELQNRLHKNHLMVILGNARKAT 218


>gi|297683870|ref|XP_002819616.1| PREDICTED: exosome complex exonuclease RRP41-like [Pongo abelii]
          Length = 343

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 103/250 (41%), Gaps = 35/250 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L         P  IR ++      
Sbjct: 111 RVDGRRAGELRKIQARMGVFAQADGSGYIEQGNTKALAVVY----GPHEIRGSRARALPD 166

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113
              +  +Y     STG R +R     R G R S E+   + +   + + L+ L  R QI 
Sbjct: 167 RALVNCQYSSATFSTGERKRR-----RHGDRKSCEMGLQLRQTFEAAI-LTQLHPRSQID 220

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           I   V+QADGGT  A +  A +A+ D    M D              V A S G + G  
Sbjct: 221 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTA 267

Query: 174 IVDLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           + DL + E++      A  ++  SG I  ++  A      +DH   +L  A     D+  
Sbjct: 268 LADLSHVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLERVLEAAAQAARDVHT 324

Query: 233 LQKDVISNEV 242
           L   V+   V
Sbjct: 325 LLDRVVRQHV 334


>gi|241663489|ref|YP_002981849.1| polynucleotide phosphorylase/polyadenylase [Ralstonia pickettii
           12D]
 gi|240865516|gb|ACS63177.1| Polyribonucleotide nucleotidyltransferase [Ralstonia pickettii 12D]
          Length = 724

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 82/204 (40%), Gaps = 25/204 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL  V+      +  I +  +
Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREVGHG----RLAKRALIPVLPKDDEFAYTIRLVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 LK HVA ++ G++        
Sbjct: 433 ITESNGSSSMASVCGGSLALMDA-------------GVPLKAHVAGVAMGLILEDNKFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSG 197
           + D+   ED   D+D     TD+G
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTDAG 503


>gi|309781847|ref|ZP_07676580.1| polyribonucleotide nucleotidyltransferase [Ralstonia sp. 5_7_47FAA]
 gi|308919488|gb|EFP65152.1| polyribonucleotide nucleotidyltransferase [Ralstonia sp. 5_7_47FAA]
          Length = 722

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 82/204 (40%), Gaps = 25/204 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL  V+      +  I +  +
Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREVGHG----RLAKRALIPVLPKDDEFAYTIRLVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 LK HVA ++ G++        
Sbjct: 431 ITESNGSSSMASVCGGSLALMDA-------------GVPLKAHVAGVAMGLILEDNKFAV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSG 197
           + D+   ED   D+D     TD+G
Sbjct: 478 LTDILGDEDHLGDMDFKVAGTDAG 501


>gi|218670439|ref|ZP_03520110.1| ribonuclease PH [Rhizobium etli GR56]
          Length = 61

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 28/39 (71%)

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
           CG+     ++DLDY EDS+ + DANFVMT +G IVE++ 
Sbjct: 9   CGVFASQAVIDLDYLEDSSAETDANFVMTGAGGIVEIRA 47


>gi|194215186|ref|XP_001917049.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal
           RNA-processing protein 41) (Exosome component 4) (p12A)
           [Equus caballus]
          Length = 245

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 35/250 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L         P  IR ++      
Sbjct: 13  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRARALPD 68

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113
              +  +Y     STG R +R       G R S E+   + +   + + L+ L  R QI 
Sbjct: 69  RALVNCQYSSATFSTGERKRRP-----HGDRKSCEMGLQLRQTFEAAI-LTQLHPRSQID 122

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           I   V+QADGGT  A +  A +A+ D    M D              V A S G + G  
Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVMDAGIPMRD-------------FVCACSAGFVDGTA 169

Query: 174 IVDLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           + DL + E++      A  ++  SG I  ++  A      +DH   +L  A     D+  
Sbjct: 170 LADLSHVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARAARDVHT 226

Query: 233 LQKDVISNEV 242
           L   V+   V
Sbjct: 227 LLDRVVRQHV 236


>gi|52548824|gb|AAU82673.1| 3'-5' exoribonuclease [uncultured archaeon GZfos19A5]
          Length = 257

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 66/144 (45%), Gaps = 14/144 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   + R+IS+ R V K AEGS  VK GDT +L    +E   P +      G I  
Sbjct: 23  REDGRGFREYRDISVERDVIKRAEGSARVKIGDTEVLVGVKVELGTP-FPDTPDKGVIIT 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              ++P ++    K E  SG     S ++ R++ R +R    +DL  L    G +   + 
Sbjct: 82  NAELVPLAS---PKFE--SGPPNENSIQLARVVDRGIRGSETIDLDKLCIEEGEKVWMVF 136

Query: 114 IDCDVIQADGGTRTAAITGAWVAL 137
           ID  V+  +G    AA  GA  +L
Sbjct: 137 IDIHVLDDNGNLVDAAALGAITSL 160


>gi|123169759|sp|Q14LB9|PNP_SPICI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110005388|emb|CAK99711.1| 3' exoribonuclease transmembrane protein [Spiroplasma citri]
          Length = 702

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 15/125 (12%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRSTGN 72
           +++K A GS LV++GDT +L TAT+  K+      P+ +   +  +     G +P   G 
Sbjct: 21  QLAKQASGSVLVRYGDTVVLVTATVNNKLSEVDFFPLTVVFQEKLY---SVGKIP---GG 74

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE      G  S    R+I RALR +   +     QI+I+   +  D   R  ++  
Sbjct: 75  FLKREGKPSEYGTLS---ARVIDRALRPLFSENFRNEVQIVINVLAVDNDNDVRMVSLFA 131

Query: 133 AWVAL 137
           A +AL
Sbjct: 132 ASLAL 136



 Score = 38.9 bits (89), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 20/146 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           RL GR+ +Q+R +S    +     GS L   G+T +L+  TL    E ++   I + +  
Sbjct: 320 RLDGRKLDQIRPLSSEIDILPVVHGSALFTRGETQVLSVVTLGALGENQIIDGITDEESK 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR-ALRSVVDLSALGSRQII--- 113
                Y     S G        +GR G  S   +R IG  AL   V L  + S ++    
Sbjct: 380 RFMHHYNFPAFSVGE-------TGRMGPPS---RREIGHGALGEKVLLQIIPSEKVFPYT 429

Query: 114 --IDCDVIQADGGTRTAAITGAWVAL 137
             I  +V++++G T  A+I  A +AL
Sbjct: 430 IRIVSEVLESNGSTSQASICAATLAL 455


>gi|14250906|emb|CAC39258.1| Rrp41p homologue [Trypanosoma brucei]
          Length = 252

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 16/181 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR++N+ R ++L        +G C V  G +H+  T     +V   + + K+  +T
Sbjct: 13  LRLDGRRQNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRL-DGKYNEVT 71

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
               ++  +     +RE    R    S++I   +    RSVV LS   + QI I  +V++
Sbjct: 72  ITCDVVVAAFAGERRRE--QQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICIEVLK 129

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
            DG  + A I  A +AL D    M D              V   + G++ G+ +VDL   
Sbjct: 130 QDGSDKAACINAACLALIDASIAMRDV-------------VYTQTVGLIEGFDVVDLTTE 176

Query: 181 E 181
           E
Sbjct: 177 E 177


>gi|40217447|emb|CAE46380.1| 3'-5' exoribonuclease [uncultured archaeon]
 gi|268323830|emb|CBH37418.1| 3'-5' exoribonuclase [uncultured archaeon]
          Length = 260

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 88/213 (41%), Gaps = 14/213 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR     R+I + R + K AEGS  V+ GDT +L    +E   P +      G +  
Sbjct: 23  RADGRGFLDFRDIIVERDLIKKAEGSTRVQIGDTVVLVGVKVEPGEP-FPDTPNKGILMT 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              ++P ++      E  SG  G  S E+ R++ R +R    +DL  L    G +   I 
Sbjct: 82  NAELVPLAS-----PEFESGPPGENSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMIF 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID   +  DG    AA  GA ++L +     E      + +  ++    A++   + G  
Sbjct: 137 IDIHTLDNDGNLVDAAALGAIMSLLNVAIPYEQYGLTGEDTLQIRDTPVAVTVVEIRGNL 196

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
           +VD +  E+S        +    G I  +Q S 
Sbjct: 197 LVDPNVYEESAATSKLTVISNADGSISGLQKSG 229


>gi|9506689|ref|NP_061910.1| exosome complex component RRP41 [Homo sapiens]
 gi|109087712|ref|XP_001089090.1| PREDICTED: exosome complex exonuclease RRP41 [Macaca mulatta]
 gi|114622153|ref|XP_001154573.1| PREDICTED: exosome complex component RRP41 [Pan troglodytes]
 gi|332264376|ref|XP_003281213.1| PREDICTED: exosome complex exonuclease RRP41-like [Nomascus
           leucogenys]
 gi|14285756|sp|Q9NPD3|EXOS4_HUMAN RecName: Full=Exosome complex component RRP41; AltName:
           Full=Exosome component 4; AltName: Full=Ribosomal
           RNA-processing protein 41; AltName: Full=p12A
 gi|8927590|gb|AAF82134.1|AF281133_1 exosome component Rrp41 [Homo sapiens]
 gi|7020801|dbj|BAA91279.1| unnamed protein product [Homo sapiens]
 gi|12803867|gb|AAH02777.1| Exosome component 4 [Homo sapiens]
 gi|119602572|gb|EAW82166.1| exosome component 4 [Homo sapiens]
 gi|261860724|dbj|BAI46884.1| exosome component 4 [synthetic construct]
 gi|325464127|gb|ADZ15834.1| exosome component 4 [synthetic construct]
          Length = 245

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 35/250 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L         P  IR ++      
Sbjct: 13  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRARALPD 68

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113
              +  +Y     STG R +R       G R S E+   + +   + + L+ L  R QI 
Sbjct: 69  RALVNCQYSSATFSTGERKRRP-----HGDRKSCEMGLQLRQTFEAAI-LTQLHPRSQID 122

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           I   V+QADGGT  A +  A +A+ D    M D              V A S G + G  
Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTA 169

Query: 174 IVDLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           + DL + E++      A  ++  SG I  ++  A      +DH   +L  A     D+  
Sbjct: 170 LADLSHVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLERVLEAAAQAARDVHT 226

Query: 233 LQKDVISNEV 242
           L   V+   V
Sbjct: 227 LLDRVVRQHV 236


>gi|189239465|ref|XP_975230.2| PREDICTED: similar to exosome complex exonuclease RRP41, putative
           [Tribolium castaneum]
          Length = 249

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 102/247 (41%), Gaps = 28/247 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R I     V    +GS  ++ G T +L       +V           + 
Sbjct: 13  LRQDGRRADELRRIRCKLGVFTEPDGSAYLEQGLTKVLAAVYGPHQVGFAKAQHDSAVVN 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            ++ M   STG R KR     R   +S EI   + +AL + + +      QI +  +V+ 
Sbjct: 73  CQFSMAVFSTGERKKRP----RGDRKSTEISIHLRQALTAAIKVELYPWTQIDVYVEVLH 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDY 179
           ADGG   A +  A +AL D                 LK +V A +  +     P++D+ +
Sbjct: 129 ADGGIYPACVNAATLALIDA-------------GIPLKEYVCACTASLANNDVPLLDVSH 175

Query: 180 GED----STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            E+     T+ V A   +  SG IV ++ S     F  DH   +L+ A     D+  +  
Sbjct: 176 QEEIIGGPTLTVAA---LPMSGKIVLMEMSQR---FHVDHLQKVLDKALQGCKDIKSILD 229

Query: 236 DVISNEV 242
           + + + +
Sbjct: 230 EAVKSHI 236


>gi|195116638|ref|XP_002002859.1| GI10716 [Drosophila mojavensis]
 gi|193913434|gb|EDW12301.1| GI10716 [Drosophila mojavensis]
          Length = 249

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 79/204 (38%), Gaps = 35/204 (17%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ +++R I     V +  +GS  ++ G+T +L       +            I 
Sbjct: 13  LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTEGNDLVIN 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y     ST  R  R     R   +SQE +  + +AL + +        QI I  +V+Q
Sbjct: 73  CQYSQATFSTSERKNRP----RGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG     ++  A +AL D       C N+F         V A +  +            
Sbjct: 129 ADGANYAVSLNAATLALIDA----GICLNEF---------VVACTASL------------ 163

Query: 181 EDSTIDVDANFVMTDSGHIVEVQG 204
                  +AN  +TD  HI EV G
Sbjct: 164 ------SNANIPLTDISHIEEVSG 181


>gi|195031196|ref|XP_001988306.1| GH10637 [Drosophila grimshawi]
 gi|193904306|gb|EDW03173.1| GH10637 [Drosophila grimshawi]
          Length = 249

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 4/139 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ +++R I     V +  +GS  ++ G+T +L       +            I 
Sbjct: 13  LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKAKKSEGNDLIIN 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y     ST  R  R     R   +SQE +  + +AL + +        QI I  +V+Q
Sbjct: 73  CQYSQATFSTAERKNRP----RGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQ 128

Query: 121 ADGGTRTAAITGAWVALHD 139
           ADG     ++  A +AL D
Sbjct: 129 ADGANYAVSLNAATLALID 147


>gi|281204136|gb|EFA78332.1| Exosome complex exonuclease rrp41 [Polysphondylium pallidum PN500]
          Length = 248

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 19/224 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59
           +R+ GR+ N++R +++   +   A+GS   + G+T +        +V    R       +
Sbjct: 12  LRIDGRRNNEIRRLNMKMGIFNRADGSAYYEQGNTKITVAVYGPREVASNQRMLHDRAIV 71

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             EY     S+    K    S +Q   S EI  +I +A  S + ++     QI I   V+
Sbjct: 72  NCEYSQAAFSSATDRKPTRKSDKQ---SYEIASLIKQAFESTIQITLFPRSQIDIYVQVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGG + AA+  A +A+ D    M D              + A S   + G P++D++ 
Sbjct: 129 QADGGLKAAALNAATLAVIDAGLPMRD-------------FICACSATFIEGVPLLDMNQ 175

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
            E+ +    A+ +++    +  V      +   QD F ++L LA
Sbjct: 176 MEERS--GGADLLLSIQPQLGGVISLNMESKVPQDMFESVLELA 217


>gi|122920908|pdb|2NN6|B Chain B, Structure Of The Human Rna Exosome Composed Of Rrp41,
           Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
          Length = 249

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 35/250 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L         P  IR ++      
Sbjct: 17  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRARALPD 72

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113
              +  +Y     STG R +R       G R S E+   + +   + + L+ L  R QI 
Sbjct: 73  RALVNCQYSSATFSTGERKRRP-----HGDRKSCEMGLQLRQTFEAAI-LTQLHPRSQID 126

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           I   V+QADGGT  A +  A +A+ D    M D              V A S G + G  
Sbjct: 127 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTA 173

Query: 174 IVDLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           + DL + E++      A  ++  SG I  ++  A      +DH   +L  A     D+  
Sbjct: 174 LADLSHVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLERVLEAAAQAARDVHT 230

Query: 233 LQKDVISNEV 242
           L   V+   V
Sbjct: 231 LLDRVVRQHV 240


>gi|317129156|ref|YP_004095438.1| polyribonucleotide nucleotidyltransferase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474104|gb|ADU30707.1| polyribonucleotide nucleotidyltransferase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 697

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 25/225 (11%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           +++K A G+ LV++GDT +L+TAT  ++   +P +     +       G +P   G  +K
Sbjct: 23  QLAKQANGAVLVRYGDTAVLSTATASKEPKDLPFFPLTVNYEERLYAAGKIP---GGFIK 79

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE   GR    +    R+I R +R +         Q+I        D     AA+ G+ +
Sbjct: 80  RE---GRPSDHAVLTSRLIDRPIRPMFPDGFRNDVQVISIVMSNDQDAPAEMAAMIGSSL 136

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
           AL      + D            G +A ++ G + G  I++    +  T D++   V  +
Sbjct: 137 AL-----SVSDIP--------FSGPIAGVTIGRIDGEFIINPTPQQLETSDIEL-VVAGN 182

Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
              I  V+  AE     ++     L    D I  +I  Q+D++S 
Sbjct: 183 KDAINMVEAGAEEV--PEETILEALMYGHDEIKRIIAFQEDIVSK 225


>gi|71747850|ref|XP_822980.1| exosome complex exonuclease RRP41A [Trypanosoma brucei TREU927]
 gi|70832648|gb|EAN78152.1| exosome complex exonuclease RRP41A [Trypanosoma brucei]
          Length = 252

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 16/181 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ N+ R ++L        +G C V  G +H+  T     +V   +   K+  +T
Sbjct: 13  LRLDGRRPNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLEG-KYNEVT 71

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
               ++  +     +RE    R    S++I   +    RSVV LS   + QI I  +V++
Sbjct: 72  ITCDVVVAAFAGERRRE--QQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICIEVLK 129

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
            DG  + A I  A +AL D    M+D              V   + G++ G+ +VDL   
Sbjct: 130 QDGSDKAACINAACLALIDASIAMKDV-------------VYTQTVGLIEGFDVVDLTTE 176

Query: 181 E 181
           E
Sbjct: 177 E 177


>gi|134299798|ref|YP_001113294.1| polynucleotide phosphorylase/polyadenylase [Desulfotomaculum
           reducens MI-1]
 gi|187610295|sp|A4J5W6|PNP_DESRM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|134052498|gb|ABO50469.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum
           reducens MI-1]
          Length = 740

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 27/148 (18%)

Query: 8   ENQ--MREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG 57
           ENQ  +REISL        T R++K A G+ LV +G+T +L TAT+ +      R+    
Sbjct: 3   ENQVLIREISLGGRTLTLETGRMAKQASGAVLVTYGETVVLVTATVAKNT----RDIDFF 58

Query: 58  WITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110
            +T +Y       G +P   G  +KRE   GR   ++    R+I R +R +         
Sbjct: 59  PLTVDYEERLYAVGKIP---GGFIKRE---GRPSEKAILSGRLIDRPIRPLFPKHMRNEV 112

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALH 138
           Q++     +  D     AA+ GA  ALH
Sbjct: 113 QVVATVMSVDQDNAPEIAAMIGASAALH 140



 Score = 37.7 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 8/143 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR  +++R IS+   V     G+ L   G T +L+ ATL    EE++   +   + 
Sbjct: 324 LRIDGRAIDEIRPISVEVGVLPRTHGTGLFTRGQTQILSVATLGSISEEQILDGLGVEES 383

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG      +   R+ G       +  RAL  ++    +    I +  
Sbjct: 384 KRYMHHYNFPPFSTGETKPMRSPGRREIGHGA----LAERALEPMIPPEEVFPYTIRVVS 439

Query: 117 DVIQADGGTRTAAITGAWVALHD 139
           + I+++G T   ++ G+ ++L D
Sbjct: 440 EAIESNGSTSMGSVCGSTLSLMD 462


>gi|169841859|ref|ZP_02874968.1| ribonuclease PH [candidate division TM7 single-cell isolate TM7a]
          Length = 36

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 27/32 (84%)

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMED 146
           DCDVIQADGGTRTA+ITGA++AL   ++ + D
Sbjct: 1   DCDVIQADGGTRTASITGAYLALELAVEKLID 32


>gi|198442889|ref|NP_001128332.1| exosome complex exonuclease RRP41 [Rattus norvegicus]
          Length = 245

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 35/250 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L         P  IR ++      
Sbjct: 13  RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRSRALPD 68

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113
              +  +Y     STG R +R       G R S E+   + +   + + L+ L  R QI 
Sbjct: 69  RALVNCQYSSATFSTGERKRRP-----HGDRKSCEMGLQLRQTFEAAI-LTQLHPRSQID 122

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           I   V+QADGGT  A +  A +A+ D    M D              V A S G + G  
Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVMDAGIPMRD-------------FVCACSAGFVDGTA 169

Query: 174 IVDLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           + DL + E++      A  ++  SG I  ++  +      +DH   +L  A     D+  
Sbjct: 170 LADLSHVEEAAGGPQLALALLPASGQIALLEMDSR---LHEDHLEQVLEAAAQAARDVHT 226

Query: 233 LQKDVISNEV 242
           L   V+   V
Sbjct: 227 LLDRVVRQHV 236


>gi|195435372|ref|XP_002065667.1| GK15569 [Drosophila willistoni]
 gi|194161752|gb|EDW76653.1| GK15569 [Drosophila willistoni]
          Length = 251

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 9/149 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--W 58
           +RL GR+ +++R I     V +  +GS  ++ G+T +L       +     ++++     
Sbjct: 13  LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKNKSSESNDVI 72

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           I  +Y     ST  R  R     R   +SQE +  + +AL + +        QI +  +V
Sbjct: 73  INCQYSQATFSTAERKNRP----RGDRKSQEFKMYLQQALSAAIKSELYPRSQIDVYVEV 128

Query: 119 IQADGGTRTAAITGAWVALHD---CLQHM 144
           +QADG     A+  A +AL D   CL   
Sbjct: 129 LQADGANYAVALNAATLALIDAGICLNEF 157


>gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040461|gb|ACT57257.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 699

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 8/144 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR    +R+IS    + +   GS L   GDT  +   TL    +E+    +  T+ 
Sbjct: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y  LP +TG   +  A S R+ G      R+  RA+  V+  +A     + I  
Sbjct: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDC 140
           ++ ++DG +  A + G+ +AL D 
Sbjct: 428 EITESDGSSSMATVCGSSLALMDA 451


>gi|126322962|ref|XP_001364428.1| PREDICTED: similar to Chain G, Structure Of The Human Rna Exosome
           Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42,
           Csl4, Rrp4, And Rrp40 [Monodelphis domestica]
          Length = 245

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 98/249 (39%), Gaps = 33/249 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L         P  +R ++      
Sbjct: 13  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEMRGSRSRALPD 68

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ-EIQRMIGRALRSVVDLSALGSRQIII 114
              +  +Y M   STG R +R       G R   E+   + +   + +        QI I
Sbjct: 69  RALVNCQYSMATFSTGERKRRP-----HGDRKACEMGLQLRQTFEAAILTQLYPRSQIDI 123

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
              V+QADGG   A +  A +A+ D    M D              V A S G + G  +
Sbjct: 124 YVQVLQADGGNYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTAL 170

Query: 175 VDLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
            DL + E++      A  ++  SG +  ++  A      +DH   +L +A     D+  L
Sbjct: 171 ADLSHVEEAAGGPQLALALLPASGQLALLEMDAR---LHEDHLQQVLEVASQAARDVHAL 227

Query: 234 QKDVISNEV 242
              V+   V
Sbjct: 228 LDRVVRQHV 236


>gi|323701874|ref|ZP_08113544.1| polyribonucleotide nucleotidyltransferase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533178|gb|EGB23047.1| polyribonucleotide nucleotidyltransferase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 738

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 25/143 (17%)

Query: 11  MREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE 62
           +RE+SL        T R++K A G+ LV +GDT +L TAT+ +      R+     +T +
Sbjct: 8   IREMSLGGRKLTLETGRLAKQASGAVLVTYGDTMVLVTATVAKNT----RDIDFFPLTVD 63

Query: 63  Y-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q++  
Sbjct: 64  YEERLYAVGKIP---GGFIKRE---GRPSEKAILSGRLIDRPIRPLFPKHMRNEVQVVAT 117

Query: 116 CDVIQADGGTRTAAITGAWVALH 138
              +  D     AA+ GA  ALH
Sbjct: 118 VLSVDQDNAPEIAAMIGASAALH 140



 Score = 38.1 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 12/145 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKV--PMWIRNT 54
           +R+ GR  +++R IS+   V     GS L   G T +LT ATL    +E++   + +  T
Sbjct: 324 LRIDGRAIDEVRPISVEVGVLARTHGSGLFTRGQTQILTVATLGCVSDEQILDGLGLEET 383

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           K       Y   P STG      +   R+ G       +  RAL  ++    +    + +
Sbjct: 384 KR--YMHHYNFPPFSTGETKPMRSPGRREIGHGA----LAERALEPMIPPEEVFPYTLRV 437

Query: 115 DCDVIQADGGTRTAAITGAWVALHD 139
             + ++++G T   ++ G+ +AL D
Sbjct: 438 VSEALESNGSTSMGSVCGSTLALMD 462


>gi|296227067|ref|XP_002759197.1| PREDICTED: exosome complex exonuclease RRP41-like [Callithrix
           jacchus]
          Length = 245

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 35/250 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L         P  IR ++      
Sbjct: 13  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRARALPD 68

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113
              +  +Y     STG R +R       G R S E+   + +   + + L+ L  R QI 
Sbjct: 69  RALVNCQYSSATFSTGERKRRP-----HGDRKSCEMGLQLRQTFEAAI-LTQLHPRSQID 122

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           I   V+QADGGT  A +  A +A+ D    M D              V A S G + G  
Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTA 169

Query: 174 IVDLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           + DL + E++      A  ++  SG I  ++  A      +DH   +L  A     D+  
Sbjct: 170 LADLSHVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAAQDVHI 226

Query: 233 LQKDVISNEV 242
           L   V+   V
Sbjct: 227 LLDRVVRQHV 236


>gi|222151113|ref|YP_002560267.1| polyribonucleotide nucleotidyltransferase [Macrococcus caseolyticus
           JCSC5402]
 gi|254782726|sp|B9EBG0|PNP_MACCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|222120236|dbj|BAH17571.1| polyribonucleotide nucleotidyltransferase [Macrococcus caseolyticus
           JCSC5402]
          Length = 703

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 104/232 (44%), Gaps = 39/232 (16%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRST 70
           T +++K A G+ LV++GDT +L+TAT  ++       P+ + N +     A  G +P   
Sbjct: 21  TGQLAKQANGAVLVRYGDTVVLSTATASKEPRDVDFFPLMV-NYEEKLYAA--GKIP--- 74

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR G  +    R+I R +R +         Q+I     +  D     AA+
Sbjct: 75  GGFNKRE---GRPGEDATLTSRLIDRPIRPLFPKGYRHDVQVISIVMSVDPDNSPEMAAM 131

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG--EDSTID-- 186
            G+ +AL      + D           +G +A ++ G++ G  I++ D    E S +D  
Sbjct: 132 IGSSMAL-----AVSDIP--------FEGPIAGVNVGLVDGELIINPDVQQREVSVLDLQ 178

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           V  +F   D+ ++VE  G+ E A   +D     +      I  L++ Q+ +I
Sbjct: 179 VAGHF---DAVNMVEA-GAKEVA---EDKMLEAIMFGHAEIKKLVEFQQSII 223


>gi|125984746|ref|XP_001356137.1| GA13761 [Drosophila pseudoobscura pseudoobscura]
 gi|195161898|ref|XP_002021795.1| GL26697 [Drosophila persimilis]
 gi|54644456|gb|EAL33197.1| GA13761 [Drosophila pseudoobscura pseudoobscura]
 gi|194103595|gb|EDW25638.1| GL26697 [Drosophila persimilis]
          Length = 249

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 8/151 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ +++R I     V +  +GS  ++ G+T +L       +       T    I 
Sbjct: 13  LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGMKTETNDVIIN 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y     +T  R  R     R   +S E +  + +AL + +        QI I  +V+Q
Sbjct: 73  CQYSQATFATAERKNRP----RGDRKSLEFKMYLEQALSAAIKSELYPRSQIDIYVEVLQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKF 151
           ADG     A+  A +AL D       C N+F
Sbjct: 129 ADGANYAVALNAATLALIDA----GICLNEF 155


>gi|56963987|ref|YP_175718.1| polynucleotide phosphorylase/polyadenylase [Bacillus clausii
           KSM-K16]
 gi|81366005|sp|Q5WFU8|PNP_BACSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56910230|dbj|BAD64757.1| polyribonucleotide nucleotidyltransferase [Bacillus clausii
           KSM-K16]
          Length = 710

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 27/224 (12%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           +++K A G+ LV++GDT +L+TAT  ++   +P +     +       G +P   G  +K
Sbjct: 23  QLAKQANGAVLVRYGDTAVLSTATASKEPKDLPFFPLTVNYEERLYAAGKIP---GGFIK 79

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE   GR   R+    R+I R +R +         Q+I        D     AA+ G+ +
Sbjct: 80  RE---GRPSERAILTSRLIDRPIRPLFPDGFRNDVQVISIVMSSDQDASPEMAAMIGSSL 136

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
           AL  C+  +             +G +A ++ G + G  I++    + +  D+D     T 
Sbjct: 137 AL--CVSDIP-----------FEGPIAGVTVGRINGEFIMNPTPAQLAESDIDLTVAGTK 183

Query: 196 SG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
              ++VE  G+ E     +D     +    + I  +I  Q+ V+
Sbjct: 184 EAINMVEA-GAKE---VPEDVMLEAILAGHENIKKMIAFQEKVV 223


>gi|154497054|ref|ZP_02035750.1| hypothetical protein BACCAP_01347 [Bacteroides capillosus ATCC
           29799]
 gi|150273453|gb|EDN00581.1| hypothetical protein BACCAP_01347 [Bacteroides capillosus ATCC
           29799]
          Length = 716

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 25/174 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL------EEKVPMWIRNTK 55
           R+ GR +N++R +S    V     GS L   G T +L+ ATL      ++   +W    K
Sbjct: 322 RVDGRAKNEIRPLSAEVGVLPKVHGSGLFTRGQTQVLSVATLNTLAASQKLDTIWEEEEK 381

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P S G      + + R+ G     +R +   L SV +        I + 
Sbjct: 382 R--YMHHYNFPPYSVGEAKAPRSTNRREYGHGALAERALVPVLPSVDEF----PYAIRVV 435

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            +V+ ++G T   +I G+ +AL D                 +K  VA ISCG++
Sbjct: 436 SEVLSSNGSTSQGSICGSTLALMDA-------------GVPIKAPVAGISCGLI 476


>gi|124026371|ref|YP_001015487.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. NATL1A]
 gi|187610310|sp|A2C412|PNP_PROM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123961439|gb|ABM76222.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. NATL1A]
          Length = 722

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 97/234 (41%), Gaps = 32/234 (13%)

Query: 12  REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64
           REI LT  R +  A GS +++ GDT +L TAT        + +P+     +  +      
Sbjct: 13  REIKLTTGRFAPQAGGSVMIECGDTSVLVTATKSSGREGVDFLPLMCDYEERLYAAG--- 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R  G+ ++RE   GR   R+  I R+I R +R +         QI+  C  +     
Sbjct: 70  ---RIPGSFMRRE---GRPPERATLISRLIDRPMRPLFPGWMRDDIQIVATCLSLDERVP 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+TGA +A                     +G +AA+  G+L    +++  Y E   
Sbjct: 124 ADVLAVTGASMA-------------TLMAGIPFQGPMAAVRVGLLGDDFVLNPSYREIER 170

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            D+D     T  G +V V+  A +   S+      ++   + I +LI  QK+V+
Sbjct: 171 GDLDLVVAGTPDG-VVMVEAGANQ--LSEQDVIEAIDFGYEAITELINAQKEVL 221


>gi|72382649|ref|YP_292004.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. NATL2A]
 gi|123620931|sp|Q46JM7|PNP_PROMT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|72002499|gb|AAZ58301.1| RNA binding S1:KH [Prochlorococcus marinus str. NATL2A]
          Length = 722

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 97/234 (41%), Gaps = 32/234 (13%)

Query: 12  REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64
           REI LT  R +  A GS +++ GDT +L TAT        + +P+     +  +      
Sbjct: 13  REIKLTTGRFAPQAGGSVMIECGDTSVLVTATKSSGREGVDFLPLMCDYEERLYAAG--- 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R  G+ ++RE   GR   R+  I R+I R +R +         QI+  C  +     
Sbjct: 70  ---RIPGSFMRRE---GRPPERATLISRLIDRPMRPLFPGWMRDDIQIVATCLSLDERVP 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+TGA +A                     +G +AA+  G+L    +++  Y E   
Sbjct: 124 ADVLAVTGASMA-------------TLMAGIPFQGPMAAVRVGLLGDDFVLNPSYREIER 170

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            D+D     T  G +V V+  A +   S+      ++   + I +LI  QK+V+
Sbjct: 171 GDLDLVVAGTPDG-VVMVEAGANQ--LSEQDVIEAIDFGYEAITELINAQKEVL 221


>gi|261332827|emb|CBH15822.1| RRP41p homologue, putative [Trypanosoma brucei gambiense DAL972]
          Length = 252

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 16/181 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ N+ R ++L        +G C V  G +H+  T     +V   + + K+  +T
Sbjct: 13  LRLDGRRPNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRL-DGKYNEVT 71

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
               ++  +     +RE    R    S++I   +    RSVV LS   + QI I  +V++
Sbjct: 72  ITCDVVVAAFAGERRRE--QQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICIEVLK 129

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
            DG  + A I  A +AL D    M D              V   + G++ G+ +VDL   
Sbjct: 130 QDGSDKAACINAACLALIDASIAMRDV-------------VYTQTVGLIEGFDVVDLTTE 176

Query: 181 E 181
           E
Sbjct: 177 E 177


>gi|195996065|ref|XP_002107901.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens]
 gi|190588677|gb|EDV28699.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens]
          Length = 243

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 9/152 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--W 58
           +R+ GR+  ++R  +    V   A+GS  ++ G+T  L +     +     +  KH    
Sbjct: 9   LRIDGRRPEEIRRFNCRLGVLSRADGSAYLEQGNTKALASINGPHQAGDKAK-IKHDRVH 67

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           I  +Y M   ST  R  R     +   RS +I +++    +S +        QI I   +
Sbjct: 68  INFQYSMATFSTNERRNRP----KGDKRSIDISQLMREIFQSAILTDLYPKSQIDIHVQI 123

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMED--CS 148
           +QADGG  +A I  A +AL D    M+D  CS
Sbjct: 124 LQADGGNYSACINAATLALMDAGVPMKDFICS 155


>gi|300703637|ref|YP_003745239.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           CFBP2957]
 gi|299071300|emb|CBJ42618.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           CFBP2957]
          Length = 720

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 31/207 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL  V+      +  I +
Sbjct: 375 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPKDDEFAYTIRL 427

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             ++ +++G +  A++ G  +AL D                 +K HVA ++ G++     
Sbjct: 428 VSEITESNGSSSMASVCGGCLALMDA-------------GVPVKAHVAGVAMGLILEGNK 474

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197
              + D+   ED   D+D     TD+G
Sbjct: 475 FAVLTDILGDEDHLGDMDFKVAGTDNG 501


>gi|146104020|ref|XP_001469709.1| exosome complex exonuclease RRP41 [Leishmania infantum]
 gi|134074079|emb|CAM72821.1| putative exosome complex exonuclease rrp41 [Leishmania infantum
           JPCM5]
          Length = 246

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 7/148 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GW 58
           +RL GR+  + R + +        +GSC +  G + +        +  +  +  KH  G 
Sbjct: 13  LRLDGRRPLEARRMDIAFSTLSACDGSCDITLGQSKV-CACVFGPRESLHKQEAKHDKGL 71

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +T E  +   +  NR   +    R+   S++I   + +  RSV+ LS   + QI I  +V
Sbjct: 72  VTCEVAVAAFAGENRRNPQ----RRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEV 127

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMED 146
           +Q DG  + A +  A +AL D    M D
Sbjct: 128 LQKDGNEKIACVNAACLALIDANVAMRD 155


>gi|91772268|ref|YP_564960.1| exosome complex RNA-binding protein Rrp42 [Methanococcoides
           burtonii DSM 6242]
 gi|91711283|gb|ABE51210.1| Archaeal exosome complex exoribonuclease [Methanococcoides burtonii
           DSM 6242]
          Length = 259

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 93/224 (41%), Gaps = 15/224 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  ++ R++ +   V   AEGS  V  GDT +L    L+   P +  +   G I  
Sbjct: 22  REDGRGFDETRDLIIETNVIDKAEGSAKVLLGDTQVLVGVKLQVGSP-FADSADKGVIIT 80

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113
              + P ++ N    EA   R+  ++ E+ R++ R +R    +DL+ L   +      + 
Sbjct: 81  SMELNPIASPN---FEAGPPRE--KAIEMARVVDRGIRESGAIDLNKLCITEGEEVWIVF 135

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID  V+   G    AA  GA  AL       E       +   ++    ++S   + G  
Sbjct: 136 IDVHVLNDSGNLLDAASLGAIAALMTATIPGEREGRGEDVKLPIREMPVSLSFIDIGGEL 195

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
           ++D    E+S  D+    V    G I  +Q S    T S+++F 
Sbjct: 196 VIDATNNEESVSDLRLTIVTNQDGSICAMQKSGP-GTLSEENFL 238


>gi|83746292|ref|ZP_00943345.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           UW551]
 gi|83727042|gb|EAP74167.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           UW551]
          Length = 720

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 31/207 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL  V+      +  I +
Sbjct: 375 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPKDDEFAYTIRL 427

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             ++ +++G +  A++ G  +AL D                 +K HVA ++ G++     
Sbjct: 428 VSEITESNGSSSMASVCGGCLALMDA-------------GVPVKAHVAGVAMGLILEGNK 474

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197
              + D+   ED   D+D     TD+G
Sbjct: 475 FAVLTDILGDEDHLGDMDFKVAGTDNG 501


>gi|17546786|ref|NP_520188.1| polynucleotide phosphorylase/polyadenylase [Ralstonia solanacearum
           GMI1000]
 gi|81504298|sp|Q8XXP6|PNP_RALSO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|17429086|emb|CAD15774.1| probable polyribonucleotide nucleotidyltransferase protein
           [Ralstonia solanacearum GMI1000]
          Length = 717

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 31/207 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL  V+      +  I +
Sbjct: 375 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPKEDEFAYTIRL 427

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             ++ +++G +  A++ G  +AL D                 +K HVA ++ G++     
Sbjct: 428 VSEITESNGSSSMASVCGGCLALMDA-------------GVPVKAHVAGVAMGLILEGNK 474

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197
              + D+   ED   D+D     TD+G
Sbjct: 475 FAVLTDILGDEDHLGDMDFKVAGTDNG 501


>gi|299066328|emb|CBJ37512.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           CMR15]
          Length = 717

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 31/207 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL  V+      +  I +
Sbjct: 375 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPKDDEFAYTIRL 427

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             ++ +++G +  A++ G  +AL D                 +K HVA ++ G++     
Sbjct: 428 VSEITESNGSSSMASVCGGCLALMDA-------------GVPVKAHVAGVAMGLILEGNK 474

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197
              + D+   ED   D+D     TD+G
Sbjct: 475 FAVLTDILGDEDHLGDMDFKVAGTDNG 501


>gi|148697598|gb|EDL29545.1| exosome component 4, isoform CRA_b [Mus musculus]
          Length = 271

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 31/191 (16%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L         P  IR ++      
Sbjct: 39  RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRSRALPD 94

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113
              +  +Y     STG R +R       G R S E+   + +   + + L+ L  R QI 
Sbjct: 95  RALVNCQYSSATFSTGERKRRP-----HGDRKSCEMGLQLRQTFEAAI-LTQLHPRSQID 148

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           I   V+QADGGT  A +  A +A+ D    M D              V A S G + G  
Sbjct: 149 IYVQVLQADGGTYAACVNAATLAVMDAGIPMRD-------------FVCACSAGFVDGTA 195

Query: 174 IVDLDYGEDST 184
           + DL + E++ 
Sbjct: 196 LADLSHVEEAA 206


>gi|206901853|ref|YP_002250868.1| polyribonucleotide nucleotidyltransferase [Dictyoglomus
           thermophilum H-6-12]
 gi|254782719|sp|B5YEB0|PNP_DICT6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|206740956|gb|ACI20014.1| polyribonucleotide nucleotidyltransferase [Dictyoglomus
           thermophilum H-6-12]
          Length = 693

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 24/173 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGW 58
           R+ GR+ N++R +S    V K   GS L + G+T +L+  TL   EE++   +  ++   
Sbjct: 315 RVDGRKLNEIRPVSCEVGVLKRVHGSALFQRGETQVLSVVTLGAGEEQIIESVIESEPKR 374

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQR--MIGRALRSVVDLSALGSRQIIIDC 116
               Y   P S G     EA   R G + +EI    +  RAL  ++         I +  
Sbjct: 375 YIHHYNFPPFSVG-----EAKPLR-GPKRREIGHGALAERALLPLIPKEEEFPYTIRVVS 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           +V+ ++G T  A++ G+ ++L D                 +K HVA ++ G++
Sbjct: 429 EVLSSNGSTSMASVCGSSLSLMDA-------------GVPIKTHVAGVAMGLI 468


>gi|212223176|ref|YP_002306412.1| exosome complex RNA-binding protein Rrp42 [Thermococcus onnurineus
           NA1]
 gi|226740342|sp|B6YSE7|ECX2_THEON RecName: Full=Probable exosome complex exonuclease 2
 gi|212008133|gb|ACJ15515.1| 3'-5' exoribonuclease [Thermococcus onnurineus NA1]
          Length = 272

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 25/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR     R++ +   V + AEGS  VK G+T +L    ++   P +    + G IT 
Sbjct: 24  RVDGRSLEDYRDLEIKINVIEKAEGSAWVKLGNTQVLVGIKVDMGEP-FPDLPEKGVITT 82

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALG------SRQII 113
              ++P ++ +        G    R+ E+ R++ R +R    V+L  L        R + 
Sbjct: 83  NVELVPLASPS-----FEPGPPDERAIELARVVDRGIRESGAVELEKLVIVPGKLVRVVF 137

Query: 114 IDCDVIQADGGTRTAAITGAWVAL---------HDCLQHMEDCSNKFQLSQVLKGHVAAI 164
           ID  V+  DG    A+  GA  AL         +D         ++++   V K  +  +
Sbjct: 138 IDVHVLDHDGNLLDASGIGAIAALMSAKMPKVVYDEESGEVQILDEYEPLPVSKMPI-PV 196

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           +   + G  +VD +  E+  +D        ++G I  VQ S E  +F  +     ++LA 
Sbjct: 197 TIAKVGGNLLVDPNLDEELVMDGRITITTDENGMISSVQKS-EGGSFKLEEVMYAIDLAL 255

Query: 225 DRIADL 230
            + A++
Sbjct: 256 TKAAEI 261


>gi|312065760|ref|XP_003135946.1| EXOSome component family member [Loa loa]
 gi|307768890|gb|EFO28124.1| EXOSome component family member [Loa loa]
          Length = 247

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 21/187 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT--ATLEEKVPMWIRNTKHGWI 59
           R  GR+  Q+R ++    V   A+GS  ++ G+T +L       E K    +   +   I
Sbjct: 10  RQDGRKPYQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQRSRLLEDR-CII 68

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y M   ST  R +R     R   RS E  R++ +A  + V        QI + C+++
Sbjct: 69  NCQYSMATFSTNERKERP----RGDRRSLEFARLMEKAFEAAVLTENYPRSQIDVFCELL 124

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLD 178
           QADG    A +    +AL D    M             +G VAA SC     G   VD++
Sbjct: 125 QADGSHLAACVNVGTLALADAGVPM-------------RGLVAAASCACAPNGVACVDVN 171

Query: 179 YGEDSTI 185
             E+  I
Sbjct: 172 SREEMGI 178


>gi|300691020|ref|YP_003752015.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           PSI07]
 gi|299078080|emb|CBJ50723.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           PSI07]
          Length = 722

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 31/207 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALSGEYRD 374

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL  V+      +  I +
Sbjct: 375 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPKEDEFAYTIRL 427

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             ++ +++G +  A++ G  +AL D                 +K HVA ++ G++     
Sbjct: 428 VSEITESNGSSSMASVCGGCLALMDA-------------GVPVKAHVAGVAMGLILEGNK 474

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197
              + D+   ED   D+D     TD+G
Sbjct: 475 FAVLTDILGDEDHLGDMDFKVAGTDNG 501


>gi|18977939|ref|NP_579296.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus furiosus DSM
           3638]
 gi|29336823|sp|Q8U0M0|ECX2_PYRFU RecName: Full=Probable exosome complex exonuclease 2
 gi|18893709|gb|AAL81691.1| hypothetical protein PF1567 [Pyrococcus furiosus DSM 3638]
          Length = 277

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 88/222 (39%), Gaps = 26/222 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT--TATLEEKVPMWIRNTKHGWI 59
           R+  R     R I +   V + AEGS LVK G+T +L    ATL E  P        G +
Sbjct: 24  RIDDRGFEDYRPIEVEVGVIEKAEGSALVKLGNTQVLVGIKATLGEPFP---DTPNMGVM 80

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS------ALGS--RQ 111
           T    ++P ++          G    R+ E+ R+I R +R    L+      A G   R 
Sbjct: 81  TTNVELVPLASPT-----FEPGPPDERAIELARVIDRGIRESRALNLEKMVIAPGKIVRV 135

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQLSQVLKGHVAAISCG 167
           + ID  V+  DG    A   GA  AL +     + + E+      L +     V  I   
Sbjct: 136 VFIDVHVLDHDGNLMDAIGIGAIAALLNARVPKVLYNEETGEVEILEEKEPLPVEKIPIS 195

Query: 168 M----LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
           +    +  Y +VD    E+  +D        ++GHI  VQ S
Sbjct: 196 VTFAKIGNYLVVDPTLEEEQIMDGRLTITTDETGHISAVQKS 237


>gi|150389523|ref|YP_001319572.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus
           metalliredigens QYMF]
 gi|187470926|sp|A6TNZ5|PNP3_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 3; AltName:
           Full=Polynucleotide phosphorylase 3; Short=PNPase 3
 gi|149949385|gb|ABR47913.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus
           metalliredigens QYMF]
          Length = 702

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 107/245 (43%), Gaps = 35/245 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKH 56
           M+L GR    + EI    +V++ A+GSC++K+GDT +L TA      +E +  +  +  +
Sbjct: 7   MKLGGRP--FVVEIG---KVAELAQGSCMIKYGDTTVLVTACASKEPKEGLDFFPLSCDY 61

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                  G +P   G  +KRE+   R   ++    R+I R +R +         Q+I   
Sbjct: 62  EEKLYAVGKIP---GGFIKRES---RPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATV 115

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
             +  D     +A+ G+ +AL          SN         G  A++S GM+ G  IV+
Sbjct: 116 LSMDQDCPPDISAMIGSSIAL--------SVSN-----IPFMGPTASVSVGMIDGEYIVN 162

Query: 177 L--DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
                 EDST+++    V      I+ ++  A   T +Q      +  A + I  ++   
Sbjct: 163 PTSKQKEDSTLEL---IVSGTKNAIMMIEAGANELTEAQ--ILDAIMFAHEEIKKIVAFI 217

Query: 235 KDVIS 239
           ++++S
Sbjct: 218 ENIVS 222


>gi|29611663|ref|NP_780608.1| exosome complex component RRP41 [Mus musculus]
 gi|21759405|sp|Q921I9|EXOS4_MOUSE RecName: Full=Exosome complex component RRP41; AltName:
           Full=Exosome component 4; AltName: Full=Ribosomal
           RNA-processing protein 41
 gi|15126706|gb|AAH12277.1| Exosome component 4 [Mus musculus]
 gi|26354721|dbj|BAC40987.1| unnamed protein product [Mus musculus]
 gi|74184267|dbj|BAE25679.1| unnamed protein product [Mus musculus]
 gi|74198393|dbj|BAE39680.1| unnamed protein product [Mus musculus]
          Length = 245

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 31/191 (16%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L         P  IR ++      
Sbjct: 13  RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRSRALPD 68

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113
              +  +Y     STG R +R       G R S E+   + +   + + L+ L  R QI 
Sbjct: 69  RALVNCQYSSATFSTGERKRRP-----HGDRKSCEMGLQLRQTFEAAI-LTQLHPRSQID 122

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           I   V+QADGGT  A +  A +A+ D    M D              V A S G + G  
Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVMDAGIPMRD-------------FVCACSAGFVDGTA 169

Query: 174 IVDLDYGEDST 184
           + DL + E++ 
Sbjct: 170 LADLSHVEEAA 180


>gi|157877098|ref|XP_001686881.1| exosome complex exonuclease RRP41 [Leishmania major strain
           Friedlin]
 gi|68129956|emb|CAJ09264.1| putative exosome complex exonuclease rrp41 [Leishmania major strain
           Friedlin]
          Length = 246

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 20/183 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GW 58
           +RL GR+  + R + +        +GSC +  G + +        +  +  +  KH  G 
Sbjct: 13  LRLDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKV-CACVFGPRESLHKQEAKHDKGL 71

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +T E  +   +  NR   +    R+   S++I   + +  RSV+ LS   + QI I  +V
Sbjct: 72  VTCEVAVAAFAGENRRNPQ----RRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEV 127

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +Q DG  + A +  A +AL D    M D              V  I  G+L  + ++DL 
Sbjct: 128 LQQDGNEKIACVNAACLALIDANVAMRD-------------AVCCIDAGILDEHMLIDLT 174

Query: 179 YGE 181
             E
Sbjct: 175 SNE 177


>gi|116748674|ref|YP_845361.1| polynucleotide phosphorylase/polyadenylase [Syntrophobacter
           fumaroxidans MPOB]
 gi|187611325|sp|A0LHM4|PNP_SYNFM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116697738|gb|ABK16926.1| Polyribonucleotide nucleotidyltransferase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 699

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 101/244 (41%), Gaps = 47/244 (19%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++ A GS L+++GDT +L  AT E++       VP+ +   +  +         R  G 
Sbjct: 21  IARQAGGSVLMRYGDTVVLIAATKEDRIREGIDFVPLMVDYQEMSYAAG------RIPGG 74

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
             +RE   GR   +     R+I R +R +         Q++     +  +      A+TG
Sbjct: 75  FFRREI--GRPSEKETLTSRLIDRPIRPLFPKKYCYETQVVATVLSVDMENEPDVVALTG 132

Query: 133 AWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
           A  ALH              +S V  +G VAA+  G + G   ++    E   ++ D N 
Sbjct: 133 ASTALH--------------ISPVPFQGPVAAVRVGRINGSFAINPSAKE--LLESDLNV 176

Query: 192 VMTDS-GHIVEVQGSAERAT---------FSQDHFFAMLNLAKD----RIADLIKLQKDV 237
           V+  S   +V V+G A+  +         F       +L+ A+D    RIA + +   +V
Sbjct: 177 VVAGSRDAVVMVEGGADFVSEDDLVDAIDFGHKAILPILD-AQDELQRRIAPVKEAPPEV 235

Query: 238 ISNE 241
           + NE
Sbjct: 236 VRNE 239


>gi|157413740|ref|YP_001484606.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9215]
 gi|187610311|sp|A8G5Y9|PNP_PROM2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157388315|gb|ABV51020.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. MIT 9215]
          Length = 721

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 100/237 (42%), Gaps = 34/237 (14%)

Query: 12  REISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYG 64
           REI LT  + +  A GS +++ GDT LL TAT   K      +P+     +  +      
Sbjct: 13  REIRLTTGLYAPQASGSVMIECGDTSLLVTATKTTKKEASDFLPLICDYEEKLYAAG--- 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R  G  ++RE   GR   R+  I R+I R +R +         QI+  C  +     
Sbjct: 70  ---RIPGGFMRRE---GRPPERATLISRLIDRPMRPLFPTWMRDEIQIVASCLSLDERVP 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183
               A+TGA +A                L ++   G +AA+  G++    I++  Y E  
Sbjct: 124 ADVLAVTGASIAT--------------LLGEIPFYGPMAAVRVGLIGDDFILNPSYREIE 169

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             D+D     +  G IV ++  A +   S+      ++   + + +LIK Q+D++ +
Sbjct: 170 KGDLDIVVAGSPDG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVTELIKSQEDLLKD 223


>gi|52548653|gb|AAU82502.1| tRNA nucleotidyltransferase [uncultured archaeon GZfos18B6]
          Length = 238

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 85/204 (41%), Gaps = 14/204 (6%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
            R+I + R + K AEGS  V+ GDT +L    +E   P +      G +     ++P ++
Sbjct: 10  FRDIIVERDLIKKAEGSTRVQIGDTVVLVGVKVEPGAP-FPDTPNKGVLMTNAELVPLAS 68

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QIIIDCDVIQAD 122
                 E  SG  G  S E+ R++ R +R    +DL  L    G +   I ID   +  D
Sbjct: 69  -----PEFESGPPGENSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMIFIDIHTLDND 123

Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
           G    AA  GA ++L +     E      + +  ++    A++   + G  +VD +  E+
Sbjct: 124 GNLVDAAALGAIMSLLNVTIPYEQYGLTGEDTLQIRDTPVAVTVVEIGGNLLVDPNVYEE 183

Query: 183 STIDVDANFVMTDSGHIVEVQGSA 206
           S        +    G I  +Q S 
Sbjct: 184 SAATSKLTVISNADGSISGLQKSG 207


>gi|195398184|ref|XP_002057704.1| GJ18275 [Drosophila virilis]
 gi|194141358|gb|EDW57777.1| GJ18275 [Drosophila virilis]
          Length = 249

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 4/139 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ +++R I     V +  +GS  ++ G+T +L       +            I 
Sbjct: 13  LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTEGNDLIIN 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y     ST  R  R     R   +SQE +  + +AL + +        QI I  +V+Q
Sbjct: 73  CQYSQATFSTSERKNRP----RGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQ 128

Query: 121 ADGGTRTAAITGAWVALHD 139
           ADG     ++  A +AL D
Sbjct: 129 ADGANYAVSLNAATLALID 147


>gi|188996726|ref|YP_001930977.1| Polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|254782742|sp|B2V900|PNP_SULSY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|188931793|gb|ACD66423.1| Polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 703

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 67/174 (38%), Gaps = 22/174 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR+  ++R I +   V     GS +   G T    T TL       I  +     T
Sbjct: 311 IRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSPSEGQIEESIEAGET 370

Query: 61  AE-----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
            +     Y   P STG       VS R+ G       +  RAL  ++         I + 
Sbjct: 371 LKRFMLHYNFPPFSTGEAKPPRPVSRREIGHGN----LAERALEPLIPSEEEFPYVIRVV 426

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            D+++++G T  A + G  +AL D    M             K HVA I+ G++
Sbjct: 427 SDILESNGSTSMATVCGGSLALFDAGVPM-------------KKHVAGIAMGLI 467


>gi|194333349|ref|YP_002015209.1| polynucleotide phosphorylase/polyadenylase [Prosthecochloris
           aestuarii DSM 271]
 gi|257096703|sp|B4S5G5|PNP_PROA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|194311167|gb|ACF45562.1| Polyribonucleotide nucleotidyltransferase [Prosthecochloris
           aestuarii DSM 271]
          Length = 734

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 65/148 (43%), Gaps = 20/148 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR+ +++R IS+   +   A GS L   G+T  L T TL  K    + +T       
Sbjct: 334 RLDGRRLDEVRPISIELGLIPRAHGSALFTRGETQALVTLTLGTKKDAQMIDTLTDDADK 393

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111
                Y   P S G        +GR GG S   +R IG      RA+R V    +     
Sbjct: 394 RFMLHYNFPPFSVGE-------TGRVGGTS---RREIGHGNLAERAIRKVAPAESAFPYT 443

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHD 139
           I I  D+++++G +  A++ G  +A  D
Sbjct: 444 IRIVSDILESNGSSSMASVCGGALAAMD 471


>gi|322503669|emb|CBZ38755.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 246

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 7/148 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GW 58
           +RL GR+  + R + +        +GSC +  G + +        +  +  +  KH  G 
Sbjct: 13  LRLDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKV-CACVFGPRESLHKQEAKHDKGL 71

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +T E  +   +  NR   +    R+   S++I   + +  RSV+ LS   + QI I  +V
Sbjct: 72  VTCEVAVAAFAGENRRNPQ----RRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEV 127

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMED 146
           +Q DG  + A +  A +AL D    M D
Sbjct: 128 LQKDGNEKIACVNAACLALIDANVAMRD 155


>gi|91069865|gb|ABE10796.1| polyribonucleotide nucleotidyltransferase [uncultured
           Prochlorococcus marinus clone ASNC1363]
          Length = 721

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 101/237 (42%), Gaps = 34/237 (14%)

Query: 12  REISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYG 64
           REI LT  + +  A GS +++ GDT LL TAT   K      +P+     +  +      
Sbjct: 13  REIRLTTGLYAPQASGSVMIECGDTSLLVTATKTLKKETSDFLPLICDYEEKLYAAG--- 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R  G  ++RE   GR   R+  I R+I R +R +  +      QI+  C  +     
Sbjct: 70  ---RIPGGFMRRE---GRPPERATLIARLIDRPMRPLFPVWMRDEIQIVASCLSLDERVP 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183
               A+TGA +A                L ++   G +AA+  G++    I++  Y E  
Sbjct: 124 ADVLAVTGASIAT--------------LLGEIPFYGPMAAVRVGLIGDDFILNPSYREIE 169

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             D+D     +  G IV ++  A +   S+      ++   + + +LIK Q+D++ +
Sbjct: 170 KGDLDIVVAGSPDG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVTELIKSQEDLLKD 223


>gi|194860851|ref|XP_001969665.1| GG10219 [Drosophila erecta]
 gi|190661532|gb|EDV58724.1| GG10219 [Drosophila erecta]
          Length = 246

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 11/141 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GW 58
           +RL GR+ +++R I     V +  +GS  ++ G+T +L       +       +KH    
Sbjct: 13  LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQA-----KSKHTESI 67

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           I  +Y     ST  R  R     R   +S E +  + +AL + +        QI I  +V
Sbjct: 68  INCQYSQATFSTAERKYRP----RGDRKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEV 123

Query: 119 IQADGGTRTAAITGAWVALHD 139
           +QADG     A+  A +AL D
Sbjct: 124 LQADGANYAVALNAATLALID 144


>gi|126696730|ref|YP_001091616.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9301]
 gi|187610309|sp|A3PE40|PNP_PROM0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|126543773|gb|ABO18015.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. MIT 9301]
          Length = 721

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 101/237 (42%), Gaps = 34/237 (14%)

Query: 12  REISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYG 64
           REI LT  + +  A GS +++ GDT LL TAT   K      +P+     +  +      
Sbjct: 13  REIRLTTGLYAPQANGSVMIECGDTSLLVTATKTTKKEVSDFLPLICDYEEKLYAAG--- 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R  G  ++RE   GR   R+  I R+I R +R +         QI+  C  +     
Sbjct: 70  ---RIPGGFMRRE---GRPPERATLISRLIDRPMRPLFPSWMRDEIQIVASCLSLDERVP 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183
               A+TGA +A                L ++   G +AA+  G++    I++  Y E  
Sbjct: 124 ADILAVTGASIATL--------------LGEIPFYGPMAAVRVGLIGDDFILNPSYREIE 169

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             D+D     +  G IV ++  A +   S+      ++   + +++LIK Q+D++ +
Sbjct: 170 KGDLDIVVAGSKEG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVSELIKSQEDLLKD 223


>gi|270010551|gb|EFA06999.1| hypothetical protein TcasGA2_TC009968 [Tribolium castaneum]
          Length = 251

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 104/249 (41%), Gaps = 30/249 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GW 58
           +R  GR+ +++R I     V    +GS  ++ G T +L       +V       +H    
Sbjct: 13  LRQDGRRADELRRIRCKLGVFTEPDGSAYLEQGLTKVLAAVYGPHQVRGSRSKAQHDSAV 72

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  ++ M   STG R KR     R   +S EI   + +AL + + +      QI +  +V
Sbjct: 73  VNCQFSMAVFSTGERKKRP----RGDRKSTEISIHLRQALTAAIKVELYPWTQIDVYVEV 128

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDL 177
           + ADGG   A +  A +AL D                 LK +V A +  +     P++D+
Sbjct: 129 LHADGGIYPACVNAATLALIDA-------------GIPLKEYVCACTASLANNDVPLLDV 175

Query: 178 DYGED----STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
            + E+     T+ V A   +  SG IV ++ S     F  DH   +L+ A     D+  +
Sbjct: 176 SHQEEIIGGPTLTVAA---LPMSGKIVLMEMSQR---FHVDHLQKVLDKALQGCKDIKSI 229

Query: 234 QKDVISNEV 242
             + + + +
Sbjct: 230 LDEAVKSHI 238


>gi|116754658|ref|YP_843776.1| exosome complex RNA-binding protein Rrp42 [Methanosaeta thermophila
           PT]
 gi|116666109|gb|ABK15136.1| ribosomal RNA-processing protein RRP42 [Methanosaeta thermophila
           PT]
          Length = 257

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 92/236 (38%), Gaps = 23/236 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   Q R I + R + K AEGS LVK G T ++    ++   P +      G I  
Sbjct: 22  RADGRSFTQYRPIEIERNIIKKAEGSALVKLGKTQVMVGIKIQPGEP-FPDAPNRGVIVT 80

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQ--II 113
              ++P ++          G       E+ R++ R +R    VDL AL    G +   I 
Sbjct: 81  NAELVPLASPI-----FEPGPPNEYGIELARVVDRGVRESGSVDLDALCIVPGEKVWIIF 135

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM----L 169
           ID  ++   G    A+  GA  AL          +++F L +  +  V  I         
Sbjct: 136 IDIHILDDCGNIMDASSLGAIAALLGATVP----ASRFGLGEDFQLPVRDIPIATTAVEF 191

Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
               + D D  E++  D     +    G I  +Q S      S+D  + ++++A D
Sbjct: 192 GDVVLFDPDVDEEAIADAKLTVITKADGTICGMQKSGP-GMLSEDQVYRIVDIACD 246


>gi|220931634|ref|YP_002508542.1| Polyribonucleotide nucleotidyltransferase [Halothermothrix orenii H
           168]
 gi|254782723|sp|B8CW78|PNP_HALOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219992944|gb|ACL69547.1| Polyribonucleotide nucleotidyltransferase [Halothermothrix orenii H
           168]
          Length = 705

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 89/228 (39%), Gaps = 33/228 (14%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRST 70
           T + +K A GS + ++GDT +L TAT+ E        P+ +   +  +     G +P S 
Sbjct: 18  TGKYAKQANGSVVARYGDTTVLVTATMSEPREGIDYFPLMVNYEERVYAI---GKIPGSI 74

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
             R       GR    +    R+I R LR +         QII     +  D      A+
Sbjct: 75  TRR------EGRPRDVATLAARLIDRPLRPLFPEGFRHDVQIIATVLSVDNDCEPDILAL 128

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
            GA VAL               LS +   G +  +  G++ G  +++ D  E     +D 
Sbjct: 129 NGASVAL--------------TLSDIPFDGPIGGVKVGLVDGELVINPDEEEREKSKLDL 174

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
               T    ++   G+ E    S+D     + LA   I  L+ LQ+++
Sbjct: 175 TVAGTRDAVLMVEAGANE---VSEDVMLDAIELAHQEIKRLVLLQEEI 219


>gi|194289155|ref|YP_002005062.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus taiwanensis
           LMG 19424]
 gi|226702643|sp|B3R3W3|PNP_CUPTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|193222990|emb|CAQ68995.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus taiwanensis
           LMG 19424]
          Length = 723

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 31/207 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL  V+      +  I +
Sbjct: 377 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPKEDEFAYTIRL 429

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             ++ +++G +  A++ G  +AL D                 +K HVA ++ G++     
Sbjct: 430 VSEITESNGSSSMASVCGGCLALMDA-------------GVPVKAHVAGVAMGLILEGNK 476

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197
              + D+   ED   D+D     TD+G
Sbjct: 477 FAVLTDILGDEDHLGDMDFKVAGTDNG 503


>gi|226227170|ref|YP_002761276.1| polyribonucleotide nucleotidyltransferase [Gemmatimonas aurantiaca
           T-27]
 gi|257096690|sp|C1A3Y1|PNP_GEMAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226090361|dbj|BAH38806.1| polyribonucleotide nucleotidyltransferase [Gemmatimonas aurantiaca
           T-27]
          Length = 732

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 23/175 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKH-GW 58
           +R+ GR+++++R IS+   V   A GS L   G T  L  ATL   K    + + K  G 
Sbjct: 309 LRVDGRKKDEVRAISIDTSVLPRAHGSALFTRGQTQALVAATLGTAKDAQRLDSIKEPGE 368

Query: 59  IT----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +T      Y   P STG        S R+ G       +  RAL+ V+   A     I I
Sbjct: 369 VTRSFMLHYNFPPFSTGEVRPMRGTSRREIGHGN----LAERALQGVLPDFADFPYTIRI 424

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             DV++++G +  A++ G  ++L D                 LK  VA ++ G++
Sbjct: 425 VSDVLESNGSSSMASVCGGSLSLFDA-------------GVPLKAAVAGVAMGLI 466



 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 25/227 (11%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNR 73
           T R++K A GS +V+FG+T +L   T+ E    +P +    ++   T   G +P   G  
Sbjct: 17  TGRMAKQAAGSAVVQFGETMVLAAVTVSENQSPLPFFPLTVEYKEKTYAAGKIP---GGF 73

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
           +KRE   GR         R+I R++R +         Q+ I       +      A+  A
Sbjct: 74  IKRE---GRPHDHEILAARIIDRSIRPLFPEGFKNEVQVFIYVISADQENDADVLALVAA 130

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
             AL+         ++K        G +A +  G + G+ +++  + +    D++   V 
Sbjct: 131 SFALN---------ASKIPFL----GPIAGVRVGRVQGHWVLNPTFQQLGFSDLEL-VVA 176

Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                IV V+G +     S++     L L+ D I +LI +Q+++++ 
Sbjct: 177 GSKDSIVMVEGGS--LEVSEEDVLESLRLSHDGIRELIGMQEELLAK 221


>gi|94309868|ref|YP_583078.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus
           metallidurans CH34]
 gi|187611276|sp|Q1LPW7|PNP_RALME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|93353720|gb|ABF07809.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus
           metallidurans CH34]
          Length = 725

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 31/207 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL  V+      +  I +
Sbjct: 377 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPKDDEFAYTIRL 429

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             ++ +++G +  A++ G  +AL D                 +K HVA ++ G++     
Sbjct: 430 VSEITESNGSSSMASVCGGCLALMDA-------------GVPVKAHVAGVAMGLILEGNK 476

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197
              + D+   ED   D+D     TD+G
Sbjct: 477 FAVLTDILGDEDHLGDMDFKVAGTDAG 503


>gi|313159231|gb|EFR58601.1| polyribonucleotide nucleotidyltransferase [Alistipes sp. HGB5]
          Length = 744

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 12/146 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL------EEKVPMWIRNT 54
           +RL GR+ +++R I         A GS +   G+T  LT+ TL      ++K  + ++ T
Sbjct: 323 LRLDGRKTDEIRPIWCEVDYLPAAHGSAIFTRGETQSLTSVTLGTKLDEKQKDEVLVQGT 382

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +       Y   P STG       +S R+ G       +  RAL+ +V L       + +
Sbjct: 383 EQ--FVLHYNFPPFSTGEAKAARGLSRREIGHGH----LAWRALKPMVPLGEENPYAVRV 436

Query: 115 DCDVIQADGGTRTAAITGAWVALHDC 140
             D+++++G +  A +    +AL D 
Sbjct: 437 VSDILESNGSSSMATVCAGTLALMDA 462



 Score = 36.2 bits (82), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 19/119 (15%)

Query: 12  REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEY 63
           R+I + T +++K A+GS +VK GDT LL T    +        +P+ +   +      +Y
Sbjct: 20  RQIEIETGKLAKQADGSVVVKQGDTMLLATVVAAKDAKPDTDFMPLQVEYKE------KY 73

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
               R  G  +KRE   GR       + R+I RALR +    A    ++ +  ++I AD
Sbjct: 74  ASCGRYPGGFMKRE---GRANDSEILVARLIDRALRPL--FPADYHAEVYVTVNLISAD 127


>gi|75045923|sp|Q7YRA3|EXOS4_BOVIN RecName: Full=Exosome complex component RRP41; AltName:
           Full=Exosome component 4; AltName: Full=Ribosomal
           RNA-processing protein 41
 gi|33411774|emb|CAD58792.1| putative exosome complex exonuclease RRP41 [Bos taurus]
 gi|296480766|gb|DAA22881.1| exosome complex exonuclease RRP41 [Bos taurus]
          Length = 245

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 31/191 (16%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L         P  IR ++      
Sbjct: 13  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRARALPD 68

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113
              +  +Y     STG R +R       G R S E+   + +   + + L+ L  R QI 
Sbjct: 69  RALVNCQYSSATFSTGERKRRP-----HGDRKSCEMGLQLRQTFEAAI-LTQLHPRSQID 122

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           I   V+QADGGT  A +  A +A+ D    M D              V A S G + G  
Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTA 169

Query: 174 IVDLDYGEDST 184
           + DL + E++ 
Sbjct: 170 LADLSHVEEAA 180


>gi|113867066|ref|YP_725555.1| polynucleotide phosphorylase/polyadenylase [Ralstonia eutropha H16]
 gi|122947022|sp|Q0KCT4|PNP_RALEH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|113525842|emb|CAJ92187.1| polyribonucleotide nucleotidyltransferase [Ralstonia eutropha H16]
          Length = 723

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 31/207 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL  V+      +  I +
Sbjct: 377 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPKDDEFAYTIRL 429

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             ++ +++G +  A++ G  +AL D                 +K HVA ++ G++     
Sbjct: 430 VSEITESNGSSSMASVCGGCLALMDA-------------GVPVKAHVAGVAMGLILEGNK 476

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197
              + D+   ED   D+D     TD+G
Sbjct: 477 FAVLTDILGDEDHLGDMDFKVAGTDNG 503


>gi|268679240|ref|YP_003303671.1| polyribonucleotide nucleotidyltransferase [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617271|gb|ACZ11636.1| polyribonucleotide nucleotidyltransferase [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 746

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 16/172 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGW 58
           +R  GR+  ++R IS+   +   A GSCL   G T  L  ATL  ++   M+   T+   
Sbjct: 343 VRADGRKLTEIRPISIETNLLPLAHGSCLFTRGQTQALVIATLGNDKDAQMYDLLTEKSS 402

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQI 112
           ++  + +     G  V  EA   R  GR     R +G      RAL  VVD++ L + ++
Sbjct: 403 VSDTFMVNYNFPGFSVG-EASPLRAPGR-----RELGHGNLARRALEPVVDINRLQTIRL 456

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
           +   ++++++G +  A I G  +AL      +E       +  V +G   A+
Sbjct: 457 V--SEILESNGSSSMATICGGALALKAAGVEIEKLVAGIAMGLVFEGDKHAV 506


>gi|291514384|emb|CBK63594.1| polyribonucleotide nucleotidyltransferase [Alistipes shahii WAL
           8301]
          Length = 747

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 8/144 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +RL GR+ +++R I         A GS +   G+T  LTT T    L+EKV   +     
Sbjct: 323 VRLDGRKTDEIRPIWCEVGYLPAAHGSAIFTRGETQSLTTVTLGTKLDEKVKDEVLVQGT 382

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG       +S R+ G       +  RAL+ ++ L       + +  
Sbjct: 383 EQFVLHYNFPPFSTGEAKAARGLSRREIGHGH----LAWRALKPMIPLGEDNPYAVRVVS 438

Query: 117 DVIQADGGTRTAAITGAWVALHDC 140
           D+++++G +  A +    +AL D 
Sbjct: 439 DILESNGSSSMATVCAGTLALMDA 462



 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 19/119 (15%)

Query: 12  REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEY 63
           R+I + T +++K A+GS +VK GDT LL T    +        +P+ +   +      +Y
Sbjct: 20  RQIEIETGKLAKQADGSVVVKMGDTMLLGTVVAAKDAKPDTDFMPLQVEYKE------KY 73

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
             + R  G  +KREA   R       + R+I RALR +    A    ++ +  ++I AD
Sbjct: 74  AAVGRFPGGFMKREA---RANDSEVLVARLIDRALRPL--FPADYHAEVYVTVNLISAD 127


>gi|195629840|gb|ACG36561.1| exosome complex exonuclease RRP46 [Zea mays]
          Length = 240

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 99/257 (38%), Gaps = 48/257 (18%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R  + T      A GS     GDT +L            +   K G    
Sbjct: 7   RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAA----------VYGPKPG---T 53

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
             G  P      V  +  +G+ G + +E +  + R L+S+  L+   +    +   V+  
Sbjct: 54  RKGENPEKASIEVVWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGD 113

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA-AISCGML-CGYPIVDLDY 179
           DG   + AI  +  AL                + +   H+A AISCG++  G  I+D   
Sbjct: 114 DGSLMSCAINASCAAL--------------AFAGIPMKHLAVAISCGVMDNGVVILDTSR 159

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAER--------------ATFSQDHFFAMLN---L 222
            E+      A+ V  +S   VE +   +R                 S+D +F  +    +
Sbjct: 160 AEEQQARSFAHLVFPNSRKSVESKDPTQRDEESERGLITCITHGAMSEDDYFNCIERGVM 219

Query: 223 AKDRIADLIK--LQKDV 237
           A  RI+D ++  LQK+V
Sbjct: 220 ASSRISDFMRKTLQKEV 236


>gi|18313177|ref|NP_559844.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum aerophilum
           str. IM2]
 gi|29336869|sp|Q8ZVN0|ECX2_PYRAE RecName: Full=Probable exosome complex exonuclease 2
 gi|18160691|gb|AAL64026.1| 3' exoribonuclease family protein [Pyrobaculum aerophilum str. IM2]
          Length = 274

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 29/251 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q R + +   V K A+GS  VK G TH++    +    P +      G +  
Sbjct: 29  RVDGRGPEQTRNVEINVGVVKTADGSAEVKLGKTHVVAGVKVGLGQP-FPDAPDEGVLVV 87

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL---GSRQII--I 114
              +LP ++          G     + E+ R++ R +R    VD   L   G +  +  I
Sbjct: 88  NAEVLPHASPY-----TEVGPPDEFAIELARVVDRGIRHCGYVDFKKLAVEGGKAYVLWI 142

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHME----------DCSNKFQLSQVLKGHVAAI 164
           D  VI  DG     A   +  AL +    +           D +NK  L   +     A+
Sbjct: 143 DLYVINDDGNLIDVANLASVAALKNTQLPVVVKDEAGVVKLDRNNKAPLPVDISKAPIAV 202

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA- 223
           S G +     +D  + E+ ++D    F  ++   IV  Q +     F+Q    A LNLA 
Sbjct: 203 SVGKIGNVLFLDPTFEEELSLDGRITFTFSED-KIVAAQKTL--GYFTQSEIEAALNLAL 259

Query: 224 --KDRIADLIK 232
             +DR+ + +K
Sbjct: 260 RGRDRLLEALK 270


>gi|237757160|ref|ZP_04585586.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237690677|gb|EEP59859.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 613

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 66/173 (38%), Gaps = 22/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+  ++R I +   V     GS +   G T    T TL       I  +     T 
Sbjct: 312 RIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSPSEGQIEESIEAGETL 371

Query: 62  E-----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
           +     Y   P STG       VS R+ G       +  RAL  ++         I +  
Sbjct: 372 KRFMLHYNFPPFSTGEAKPPRPVSRREIGHGN----LAERALEPLIPSEEEFPYVIRVVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           D+++++G T  A + G  +AL D    M             K HVA I+ G++
Sbjct: 428 DILESNGSTSMATVCGGSLALFDAGVPM-------------KKHVAGIAMGLI 467


>gi|123966596|ref|YP_001011677.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9515]
 gi|187610313|sp|A2BXQ9|PNP_PROM5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123200962|gb|ABM72570.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. MIT 9515]
          Length = 721

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 34/237 (14%)

Query: 12  REISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYG 64
           REI LT  + +  A G+ +++ GDT LL TAT   K      +P+     +  +      
Sbjct: 13  REIRLTTGLYAPQANGAVMIECGDTSLLVTATKTNKKEAADFLPLICDYEEKLYAAG--- 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R  G  ++RE   GR   R+  I R+I R +R +  +      QI+  C  +     
Sbjct: 70  ---RIPGGFMRRE---GRPPERATLIARLIDRPMRPLFPIWMRDEIQIVASCLSLDERVP 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183
               A+TGA +A                L ++   G +AA+  G+L    I++  Y E  
Sbjct: 124 ADVLAVTGASLAT--------------LLGEIPFYGPMAAVRVGLLGDDFILNPSYREIE 169

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             D+D     +  G IV ++  A +   S+      ++   + + +LIK Q++++ +
Sbjct: 170 KGDLDIIVAGSPEG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVTELIKAQENLLKD 223


>gi|301773432|ref|XP_002922117.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1
           [Ailuropoda melanoleuca]
          Length = 245

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 101/250 (40%), Gaps = 35/250 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L         P  IR ++      
Sbjct: 13  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRARALPD 68

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113
              +  +Y     STG R +R       G R S E+   + +   + + L+ L  R QI 
Sbjct: 69  RALVNCQYSSATFSTGERKRRP-----HGDRKSCEMGLQLRQTFEAAI-LTQLHPRSQID 122

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           I   V+QADGGT  A +  A +A+ D    M D              V A S G +    
Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDSTA 169

Query: 174 IVDLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           + DL + E++      A  ++  SG I  ++  A      +DH   +L  A     D+  
Sbjct: 170 LADLSHVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAARDVHT 226

Query: 233 LQKDVISNEV 242
           L   V+   V
Sbjct: 227 LLDHVVRQHV 236


>gi|78779675|ref|YP_397787.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9312]
 gi|123553957|sp|Q319U4|PNP_PROM9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78713174|gb|ABB50351.1| RNA binding S1 [Prochlorococcus marinus str. MIT 9312]
          Length = 721

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 99/238 (41%), Gaps = 36/238 (15%)

Query: 12  REISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYG 64
           REI LT  + +  A GS +++ GDT LL TAT   K      +P+     +  +      
Sbjct: 13  REIRLTTGLYAPQANGSVMIECGDTSLLVTATKTTKKEVADFLPLICDYEEKLYAAG--- 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R  G  ++RE   GR   R+  I R+I R +R +         QI+  C  +     
Sbjct: 70  ---RIPGGFMRRE---GRPPERATLISRLIDRPMRPLFPSWMRDEIQIVASCLSLDERVP 123

Query: 125 TRTAAITGAWVA--LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
               A+TGA +A  L +   H               G +AA+  G++    I++  Y E 
Sbjct: 124 ADVLAVTGASIATLLGEIPFH---------------GPMAAVRVGLIGDDFILNPSYREI 168

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
              D+D     +  G IV ++  A +   S+      ++   + + +LIK Q D++ +
Sbjct: 169 EKGDLDIVVAGSPDG-IVMIEAGANQ--LSEQDTIEAIDFGYESVTELIKSQVDLLKD 223


>gi|20093818|ref|NP_613665.1| exosome complex RNA-binding protein Rrp42 [Methanopyrus kandleri
           AV19]
 gi|29336820|sp|Q8TYC2|ECX2_METKA RecName: Full=Probable exosome complex exonuclease 2
 gi|19886741|gb|AAM01595.1| Predicted exosome subunit, predicted exoribonuclease related to
           RNase PH [Methanopyrus kandleri AV19]
          Length = 267

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 98/244 (40%), Gaps = 30/244 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   + R I +   V   A GS LV+ G+T L+    LE   P +  +   G +  
Sbjct: 23  RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRP-YPDSPNEGALAV 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------II 113
              ++P +  +        G     + E+ R++ R +R   ++DL  L   +        
Sbjct: 82  NAELVPLADPS-----FEPGPPDENAIELSRVVDRGIRESEMIDLEELCIEEGEHCWVTF 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALH-----------DCLQHMEDCSNKFQLSQVLKGHVA 162
           +D  V+  DG    A++ G+  AL            D ++ ME+ +    ++        
Sbjct: 137 VDIHVLDHDGNLFDASMIGSVSALSITEVPKAEVVDDEVEVMEEDTEPLAIND----FPI 192

Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
           +++   +  Y +VD    E+  +D      +T+SG +  VQ   E   F +      ++L
Sbjct: 193 SVTIAKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQ-KGELGDFPEHLLEDAIDL 251

Query: 223 AKDR 226
           A  +
Sbjct: 252 ATKK 255


>gi|221101900|ref|XP_002160475.1| PREDICTED: similar to putative exosome complex exonuclease RRP41
           [Hydra magnipapillata]
          Length = 244

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 9/149 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GW 58
           +R  GR+ +++R+I+  + +   A+GS  ++ G+T ++ +     +V    + T H    
Sbjct: 12  LRFDGRKCHELRKITAKKGIFSQADGSAYIEQGNTKVIASVYGPHEVSNRSK-TLHDSTL 70

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
           I  ++ M   S   R  R      +G R S EI  ++ +   + +        QI I   
Sbjct: 71  INCQFSMATFSMSERKNRP-----KGDRKSTEISMLLEKTFATAIMTELYPRSQIDIYVQ 125

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED 146
           VIQ+DGG   A I  A +AL D    M+D
Sbjct: 126 VIQSDGGVIAACINVATLALIDAGVPMKD 154


>gi|73540660|ref|YP_295180.1| polynucleotide phosphorylase/polyadenylase [Ralstonia eutropha
           JMP134]
 gi|123625489|sp|Q473U7|PNP_RALEJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|72118073|gb|AAZ60336.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ralstonia eutropha
           JMP134]
          Length = 728

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 31/207 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL  V+      +  I +
Sbjct: 377 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPKDDEFAYTIRL 429

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             ++ +++G +  A++ G  +AL D                 +K HVA ++ G++     
Sbjct: 430 VSEITESNGSSSMASVCGGCLALMDA-------------GVPVKAHVAGVAMGLILEGNK 476

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197
              + D+   ED   D+D     TD+G
Sbjct: 477 FAVLTDILGDEDHLGDMDFKVAGTDNG 503


>gi|94469342|gb|ABF18520.1| exosomal 3'-5' exoribonuclease complex subunit Rrp41-like protein
           [Aedes aegypti]
          Length = 307

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 5/145 (3%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR++N+ R+  +   V   A+GS  ++ G+T ++ +     ++P   +    G +  
Sbjct: 42  RKCGRKDNESRKYFMKLGVVSTAKGSTYLELGNTKVIVSVFDPREIPKQNKFRALGELYC 101

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           ++   P +  +R      + +     + +   + +AL+ VV      + QI I  +V++ 
Sbjct: 102 DFKFSPFACIHR-----KNPQTDAEERSLAAAMTKALQPVVCRHLFPNFQIDIFANVLED 156

Query: 122 DGGTRTAAITGAWVALHDCLQHMED 146
           DG    A IT A +AL D    M D
Sbjct: 157 DGSVLAAVITAAGLALSDATISMFD 181


>gi|66802544|ref|XP_635144.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4]
 gi|60463463|gb|EAL61648.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4]
          Length = 247

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 3/147 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59
           +R+ GR+ N++R I++   + K A+GS   + G+T ++       ++ +  +       +
Sbjct: 12  LRIDGRRANELRRINVEMGIFKRADGSAYYEQGNTKIIAAVYGPREISVSGKGVFDRAVV 71

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             E+     ST  R  ++   G +   + EI  ++ +A  S +        QI I   V+
Sbjct: 72  KCEFSSSSFSTTERKPQQKTKGDR--VTTEIANLVKQAFESTIHTHLYPRSQINIYLQVL 129

Query: 120 QADGGTRTAAITGAWVALHDCLQHMED 146
           Q+DGG + AAI  + +AL D    M+D
Sbjct: 130 QSDGGLKAAAINASTLALIDAGISMKD 156


>gi|15241441|ref|NP_196962.1| polyribonucleotide nucleotidyltransferase, putative [Arabidopsis
           thaliana]
 gi|4971998|emb|CAB43864.1| polynucleotide phosphorylase [Arabidopsis thaliana]
 gi|4972000|emb|CAB43865.1| polynucleotide phosphorylase [Arabidopsis thaliana]
 gi|7573307|emb|CAB87625.1| polynucleotide phosphorylase [Arabidopsis thaliana]
 gi|332004667|gb|AED92050.1| polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana]
          Length = 991

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 26/186 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
            R+ GR  +++R I           GS L   GDT +L T TL      + +   +   K
Sbjct: 363 FRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPAEAQSLDSLVGPPK 422

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P  T    KR  ++ R+ G       +  +AL +V+         I I+
Sbjct: 423 KRFML-HYSFPPYCTNEVGKRGGLNRREVGHGT----LAEKALLAVLPPEEAFPYTIRIN 477

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            +V+ +DG T  A++ G  +AL D                 L+ HVA +S G++     V
Sbjct: 478 SEVMSSDGSTSMASVCGGSMALMDA-------------GIPLRAHVAGVSVGLITD---V 521

Query: 176 DLDYGE 181
           D   GE
Sbjct: 522 DPSSGE 527


>gi|317061093|ref|ZP_07925578.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D12]
 gi|313686769|gb|EFS23604.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D12]
          Length = 707

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR   ++R +     V     GS L   G+T  L TATL    +E++   +    + 
Sbjct: 324 RVDGRSTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKEDEQLVDNLEKEYYK 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G       +  RALR V+         I +  D
Sbjct: 384 KFYLHYNFPPYSVGETGRMGAPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSD 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A+I G  +AL                   +K HVA I+ G++
Sbjct: 440 ITESNGSSSQASICGGSLALMSA-------------GVPIKEHVAGIAMGLI 478


>gi|221113409|ref|XP_002164788.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 258

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 55/138 (39%), Gaps = 6/138 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR EN++R + L       A GS  V+  DT L+         P   + +  G I  
Sbjct: 35  RQDGRGENEIRPMYLKAGTIHQANGSSYVETCDTKLICAVYGPRDNPKRHQFSSKGNIFC 94

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           E    P S   RV        Q   S+E    I +A  S V L +    QI I  ++++ 
Sbjct: 95  EVTFAPFSWHERV------SNQDSLSKEYSSAIVQAFESAVCLESYPKAQIDIYINILEY 148

Query: 122 DGGTRTAAITGAWVALHD 139
            G   + A   A +AL D
Sbjct: 149 SGNCLSYAFIAASIALAD 166


>gi|157114057|ref|XP_001657962.1| hypothetical protein AaeL_AAEL006697 [Aedes aegypti]
 gi|108877466|gb|EAT41691.1| conserved hypothetical protein [Aedes aegypti]
          Length = 307

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 5/145 (3%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR++N+ R+  +   V   A+GS  ++ G+T ++ +     ++P   +    G +  
Sbjct: 42  RKCGRKDNESRKYFMKLGVVSTAKGSTYLELGNTKVIVSVFDPREIPKQNKFRALGELYC 101

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           ++   P +  +R      + +     + +   + +AL+ VV      + QI I  +V++ 
Sbjct: 102 DFKFSPFACIHR-----KNPQTDAEERSLAAAMTKALQPVVCRHLFPNFQIDIFANVLED 156

Query: 122 DGGTRTAAITGAWVALHDCLQHMED 146
           DG    A IT A +AL D    M D
Sbjct: 157 DGSVLAAVITAAGLALSDATISMFD 181


>gi|118151420|ref|NP_001071554.1| exosome complex component RRP41 [Bos taurus]
 gi|81673708|gb|AAI09820.1| Exosome component 4 [Bos taurus]
          Length = 245

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 96/231 (41%), Gaps = 35/231 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L         P  IR ++      
Sbjct: 13  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRARALPD 68

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113
              +  +Y     STG R +R       G R S E+   + +   + + L+ L  R QI 
Sbjct: 69  RPLVNCQYSSATFSTGERKRRP-----HGDRKSCEMGLQLRQTFEAAI-LTQLHPRSQID 122

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           I   V+QADGGT  A +  A +A+ D    M D              V A S G + G  
Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTA 169

Query: 174 IVDLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           + DL + E++      A  ++  SG I  ++  A      +DH   +L  A
Sbjct: 170 LADLSHVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAA 217


>gi|118399581|ref|XP_001032115.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
           thermophila]
 gi|89286453|gb|EAR84452.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
           thermophila SB210]
          Length = 240

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 10/148 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGW 58
            R  GR++N++R++       +  EGSC +  G T ++       K P     R    G+
Sbjct: 11  FREDGRKKNELRKVDCILGFDQTVEGSCKLIQGLTEIVCLI----KGPHNKSTRRESEGF 66

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  +Y + P S  +R K             E    +  +  SV+    LGS +I I   V
Sbjct: 67  LNVQYNVAPFSGTDRRKISKFDKDWN----EFTENLRVSFESVILTEQLGSGEIDIIVSV 122

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMED 146
           IQADG  +++      +AL D    M+D
Sbjct: 123 IQADGSAKSSIFNAISLALMDAGIPMKD 150


>gi|16329253|ref|NP_439981.1| polynucleotide phosphorylase/polyadenylase [Synechocystis sp. PCC
           6803]
 gi|81670191|sp|P72659|PNP_SYNY3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|1651733|dbj|BAA16661.1| polyribonucleotide nucleotidyltransferase [Synechocystis sp. PCC
           6803]
          Length = 718

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 102/228 (44%), Gaps = 33/228 (14%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGNR 73
           ++  A GS L++ GDT +L TAT  +       +P+ +     G + A  G +P   G  
Sbjct: 22  LAPQAGGSVLIQSGDTAVLVTATRAKGRDGIDFLPLTV--DYEGRLYA-AGRIP---GGF 75

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
           ++RE   GR   ++  I R+I R LR +         QI+     +  +      A+TGA
Sbjct: 76  LRRE---GRPPEKATLISRLIDRPLRPLFPHWLRDELQIVATTLSMDEEVPPDVLAVTGA 132

Query: 134 WVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
            VA+               L+Q+  KG +AA+  G++    I++  Y E    D+D    
Sbjct: 133 SVAVI--------------LAQIPFKGPMAAVRVGLVGDDFIINPTYREVHNGDLDLVVA 178

Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            T +G IV V+  A +    +      ++   + + DLI  Q++++++
Sbjct: 179 GTPAG-IVMVEAGANQ--LPEQDIIEAIDFGYEAVQDLINAQRELMTD 223


>gi|302348935|ref|YP_003816573.1| Probable exosome complex exonuclease 2 [Acidilobus saccharovorans
           345-15]
 gi|302329347|gb|ADL19542.1| Probable exosome complex exonuclease 2 [Acidilobus saccharovorans
           345-15]
          Length = 280

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 102/231 (44%), Gaps = 25/231 (10%)

Query: 12  REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH-GWITAEYGMLPRST 70
           R +S+   V   A+GS  VK G+T +L    LE  +P   R+T + G +     + P ++
Sbjct: 38  RNLSIQVGVIDKADGSAWVKLGNTQVLVGVKLEVGIPY--RDTPNEGVLQVNSELTPVAS 95

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------IIIDCDVIQAD 122
                     G     + E+ R+I R+LR    +DLS+L  R       + ID  V+  D
Sbjct: 96  PT-----FEPGPPDENAVELSRVIDRSLRDPKAIDLSSLVIRPGEKAWVLWIDIYVLDYD 150

Query: 123 GGTRTAAITGAWVALHD--CLQHMEDCSNKFQLSQ------VLKGHVAAISCGMLCGYPI 174
           G    A++ G   AL +    ++ E  S +  +++       L   VA ++   +  Y +
Sbjct: 151 GNYFDASMLGVMAALMNTKVPEYEETESGEIIINREKGTPLKLNRRVALVTSVKVGDYIL 210

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
           +D +  E+   D        + G IV +Q S     +++D    +++++++
Sbjct: 211 IDPNIDEELLADSRMVIAFDEQGTIVGMQKSG-MGGYTRDELLKVIDISRN 260


>gi|322490890|emb|CBZ26154.1| putative exosome complex exonuclease rrp41 [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 246

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 20/183 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GW 58
           +RL GR+  + R + +        +GSC +  G + +  +     +  +  +  KH    
Sbjct: 13  LRLDGRRPREARRMDIAFGTLSACDGSCDITLGQSKVCAS-VFGPRESLHKQEAKHDKAL 71

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +T E  +   +  NR   +    R+   S++I   + +  RSV+ LS   + QI I  +V
Sbjct: 72  VTCEVAVAAFAGENRRNPQ----RRSRLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEV 127

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +Q DG  + A I  A +AL D    M D              V  I  G+L  + ++DL 
Sbjct: 128 LQQDGNEKIACINAACLALIDANVAMRDA-------------VCCIDAGILDEHMLIDLT 174

Query: 179 YGE 181
             E
Sbjct: 175 NDE 177


>gi|307105973|gb|EFN54220.1| hypothetical protein CHLNCDRAFT_36088 [Chlorella variabilis]
          Length = 852

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 92/230 (40%), Gaps = 38/230 (16%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-ITAEY-------GMLPR 68
           T ++++ A GSCLV+ G+T +L  AT +  +P W R          +Y       G +P 
Sbjct: 136 TGKLARLANGSCLVQCGNTTVLAAATCQ--LPPWSRREAQSLQFEVDYREKLYAVGRIP- 192

Query: 69  STGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG-- 124
             G   KRE  +     +  E+   R IGRALR +       +    +   V+ ADGG  
Sbjct: 193 --GTYNKREGTA-----KEHEVLAGRRIGRALRPLFPKGF--ALDAAVFASVLSADGGCD 243

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A++ A  AL         CS+      V    VA +  G L   P V+    +   
Sbjct: 244 PEVMAVSSASAALL--------CSDMPWAGPVAAARVAMLHDGQLVVGPSVE----QQEA 291

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
             +D     T  G +  ++   E+   +Q  F   L+LA      LIK Q
Sbjct: 292 AVLDLLVAATADGRVTMLEADGEQVPETQ--FLNALHLAVSTTQQLIKPQ 339


>gi|254168333|ref|ZP_04875178.1| 3' exoribonuclease family, domain 1 protein [Aciduliprofundum
           boonei T469]
 gi|197622614|gb|EDY35184.1| 3' exoribonuclease family, domain 1 protein [Aciduliprofundum
           boonei T469]
          Length = 226

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 14/130 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +++R +++T+     AEGS LV  G+T +L    +E   P +      G +T 
Sbjct: 28  RVDGRHFDEIRNLTVTKGYIPRAEGSALVNLGNTRVLVGVKIEPGTP-FPDTPNMGILTT 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113
              + P ++          G  G  + E+ R++ R +R    +DL  L   +      + 
Sbjct: 87  NAELAPLASPT-----FEPGPPGEEAIELARVVDRGIREGHAIDLEKLVIEEGEKVWIVF 141

Query: 114 IDCDVIQADG 123
           ID  V+  DG
Sbjct: 142 IDIHVLDYDG 151


>gi|187929298|ref|YP_001899785.1| polynucleotide phosphorylase/polyadenylase [Ralstonia pickettii
           12J]
 gi|226702680|sp|B2U7R6|PNP_RALPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187726188|gb|ACD27353.1| Polyribonucleotide nucleotidyltransferase [Ralstonia pickettii 12J]
          Length = 724

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 25/204 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V   A GS L   G+T  L  A L  K    I +   G    
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSSLFTRGETQALVVAALGTKSDEQIIDALQGEYRD 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL  V+  +      I +  +
Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREVGHG----RLAKRALIPVLPPADEFGYTIRLVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K HVA ++ G++        
Sbjct: 433 ITESNGSSSMASVCGGSLALMDA-------------GVPIKAHVAGVAMGLILEDNKFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSG 197
           + D+   ED   D+D     TD+G
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTDAG 503


>gi|15614970|ref|NP_243273.1| polynucleotide phosphorylase/polyadenylase [Bacillus halodurans
           C-125]
 gi|81786500|sp|Q9KA83|PNP_BACHD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|10175027|dbj|BAB06126.1| polynucleotide phosphorylase [Bacillus halodurans C-125]
          Length = 704

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 27/225 (12%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRSTGNR 73
           T +++K A G+ LV++GDT +L+TAT  ++   +P +     +       G +P   G  
Sbjct: 21  TGQLAKQANGAVLVRYGDTAVLSTATASKEPKDLPFFPLTVNYEERLYAAGKIP---GGF 77

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
           +KRE   GR   ++    R+I R +R +         Q+I     +  D  +  AA+ G+
Sbjct: 78  IKRE---GRPSEKAILASRLIDRPIRPLFPEGFRNEVQVISIVMSVDQDCSSEMAAMVGS 134

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
            +AL      + D           +G +A ++ G + G  ++  +  +D     D + V+
Sbjct: 135 SLAL-----SISDIP--------FEGPIAGVTVGRIDGQFVI--NPTQDQLEKSDIHLVV 179

Query: 194 TDSGHIVE-VQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
             +   +  V+  AE     +D     +    + I  LI+ Q+ +
Sbjct: 180 AGTKDAINMVEAGAEEV--PEDVMLEAIMFGHNEIKRLIEFQEKI 222


>gi|257467022|ref|ZP_05631333.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315918159|ref|ZP_07914399.1| polyribonucleotide nucleotidyltransferase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313692034|gb|EFS28869.1| polyribonucleotide nucleotidyltransferase [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 707

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR   ++R +     V     GS L   G+T  L TATL    +E++   +    + 
Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKDDEQLVDNLEKEYYK 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G       +  RALR V+         I +  D
Sbjct: 384 KFYLHYNFPPYSVGETGRMGAPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSD 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A+I G  +AL                   +K HVA I+ G++
Sbjct: 440 ITESNGSSSQASICGGSLALMSA-------------GVPIKEHVAGIAMGLI 478


>gi|317058280|ref|ZP_07922765.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_5R]
 gi|313683956|gb|EFS20791.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_5R]
          Length = 707

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR   ++R +     V     GS L   G+T  L TATL    +E++   +    + 
Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKDDEQLVDNLEKEYYK 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G       +  RALR V+         I +  D
Sbjct: 384 KFYLHYNFPPYSVGETGRMGAPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSD 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A+I G  +AL                   +K HVA I+ G++
Sbjct: 440 ITESNGSSSQASICGGSLALMSA-------------GVPIKEHVAGIAMGLI 478


>gi|83814865|ref|YP_445890.1| polynucleotide phosphorylase/polyadenylase [Salinibacter ruber DSM
           13855]
 gi|83756259|gb|ABC44372.1| polyribonucleotide nucleotidyltransferase [Salinibacter ruber DSM
           13855]
          Length = 722

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 27/142 (19%)

Query: 12  REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY------- 63
           R +SL T R++K A+GS + + GDT +L+TATL + V      +    +T +Y       
Sbjct: 26  RSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSV----NESNFFPLTVDYREKFAAG 81

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII---------I 114
           G +P   G  +KRE   GR   +     R+I RA+R +          ++          
Sbjct: 82  GKVP---GGFIKRE---GRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFVISAGQDF 135

Query: 115 DCDVIQADGGTRTAAITGAWVA 136
           D DVI   G +    ++GA  A
Sbjct: 136 DADVIAGVGSSAALMLSGAPFA 157


>gi|187611315|sp|Q2S1P1|PNP_SALRD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 712

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 27/142 (19%)

Query: 12  REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY------- 63
           R +SL T R++K A+GS + + GDT +L+TATL + V      +    +T +Y       
Sbjct: 16  RSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSV----NESNFFPLTVDYREKFAAG 71

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII---------I 114
           G +P   G  +KRE   GR   +     R+I RA+R +          ++          
Sbjct: 72  GKVP---GGFIKRE---GRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFVISAGQDF 125

Query: 115 DCDVIQADGGTRTAAITGAWVA 136
           D DVI   G +    ++GA  A
Sbjct: 126 DADVIAGVGSSAALMLSGAPFA 147


>gi|332187913|ref|ZP_08389646.1| polyribonucleotide nucleotidyltransferase [Sphingomonas sp. S17]
 gi|332012074|gb|EGI54146.1| polyribonucleotide nucleotidyltransferase [Sphingomonas sp. S17]
          Length = 773

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 90/228 (39%), Gaps = 18/228 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR   Q+R I         A GS L   G+T  + T TL     E++   +    + 
Sbjct: 314 RIDGRSTTQIRPIESEVHFLPRAHGSALFTRGETQTIATTTLGTKDAEQMIDGLNGLSYQ 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  V R    GR   R     ++  RAL  V+         I +  D
Sbjct: 374 HFMLHYNFPPYSVGE-VGRFGAPGR---REIGHGKLAWRALHPVLPSKEEFPYTIRVTSD 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  ++L D    ++   +   +  +L+G   AI         + D+
Sbjct: 430 ITESNGSSSMATVCGGSLSLMDAGVPLKRPVSGIAMGLILEGKDYAI---------LSDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
              ED   D+D     T  G I  +Q   + A  +++ F A L  AKD
Sbjct: 481 LGDEDHLGDMDFKVAGTSEG-ITTMQMDIKIAGITKEIFEAALAQAKD 527


>gi|291416252|ref|XP_002724360.1| PREDICTED: exosome component 4 [Oryctolagus cuniculus]
          Length = 245

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 96/231 (41%), Gaps = 35/231 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L         P  IR ++      
Sbjct: 13  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRSRALPD 68

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113
              +  +Y     ST  R +R       G R S E+   + +   + + L+ L  R QI 
Sbjct: 69  RALVNCQYSSATFSTAERKRRP-----HGDRKSCELGLQLRQTFEAAI-LTQLHPRSQID 122

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           I   V+QADGGT  A +  A +A+ D    M D              V A S G + G  
Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTA 169

Query: 174 IVDLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           + DL + E+++     A  ++  SG I  ++  A      +DH   +L  A
Sbjct: 170 LTDLSHVEEASGSPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAA 217


>gi|254168306|ref|ZP_04875152.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
 gi|197622815|gb|EDY35384.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
          Length = 270

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 14/130 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +++R +++T+     AEGS LV  G+T +L    +E   P +      G +T 
Sbjct: 28  RVDGRHFDEIRNLTVTKGYIPRAEGSALVNLGNTRVLVGVKIEPGTP-FPDTPNMGILTT 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113
              + P ++          G  G  + E+ R++ R +R    +DL  L   +      + 
Sbjct: 87  NAELAPLASPT-----FEPGPPGEEAIELARVVDRGIREGHAIDLEKLVIEEGEKVWIVF 141

Query: 114 IDCDVIQADG 123
           ID  V+  DG
Sbjct: 142 IDIHVLDYDG 151


>gi|294507800|ref|YP_003571858.1| polyribonucleotide nucleotidyltransferase [Salinibacter ruber M8]
 gi|294344128|emb|CBH24906.1| polyribonucleotide nucleotidyltransferase [Salinibacter ruber M8]
          Length = 745

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 27/142 (19%)

Query: 12  REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY------- 63
           R +SL T R++K A+GS + + GDT +L+TATL + V      +    +T +Y       
Sbjct: 49  RSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSV----NESNFFPLTVDYREKFAAG 104

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII---------I 114
           G +P   G  +KRE   GR   +     R+I RA+R +          ++          
Sbjct: 105 GKVP---GGFIKRE---GRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFVISAGQDF 158

Query: 115 DCDVIQADGGTRTAAITGAWVA 136
           D DVI   G +    ++GA  A
Sbjct: 159 DADVIAGVGSSAALMLSGAPFA 180


>gi|156550959|ref|XP_001603897.1| PREDICTED: similar to ENSANGP00000009222 [Nasonia vitripennis]
          Length = 270

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 8/144 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----- 55
           +R  GR+  ++R I L   V   A+GS  ++ G T +L T     + P    N       
Sbjct: 12  LRADGRRPLELRRIRLRMGVFGQADGSAYLEQGKTKILATVYGPHQ-PRGKANANALKAV 70

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
            G +  +Y     S G   +++   G +  +SQE  + +  A+ ++++L      QI I 
Sbjct: 71  KGIVNCQYSTAVFSFGAGERKKKPRGDR--KSQERSQQLRHAMEAIINLELFARSQIDIF 128

Query: 116 CDVIQADGGTRTAAITGAWVALHD 139
            +V+Q DG     A+  A +AL D
Sbjct: 129 VEVLQVDGSDFCVAVNAATLALID 152


>gi|289595859|ref|YP_003482555.1| 3' exoribonuclease [Aciduliprofundum boonei T469]
 gi|289533646|gb|ADD07993.1| 3' exoribonuclease [Aciduliprofundum boonei T469]
          Length = 270

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 14/130 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +++R +++T+     AEGS LV  G+T +L    +E   P +      G +T 
Sbjct: 28  RVDGRHFDEIRNLTVTKGYIPRAEGSALVNLGNTRVLVGVKIEPGTP-FPDTPNMGILTT 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113
              + P ++          G  G  + E+ R++ R +R    +DL  L   +      + 
Sbjct: 87  NAELAPLASPT-----FEPGPPGEEAIELARVVDRGIREGHAIDLEKLVIEEGEKVWIVF 141

Query: 114 IDCDVIQADG 123
           ID  V+  DG
Sbjct: 142 IDIHVLDYDG 151


>gi|319789227|ref|YP_004150860.1| polyribonucleotide nucleotidyltransferase [Thermovibrio
           ammonificans HB-1]
 gi|317113729|gb|ADU96219.1| polyribonucleotide nucleotidyltransferase [Thermovibrio
           ammonificans HB-1]
          Length = 714

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 38/231 (16%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRS 69
           T +V+K A+GS LV  GDT +L TA + ++        P+ +   +  +     G +P  
Sbjct: 19  TGKVAKQADGSVLVSQGDTIVLVTAVMSDEPREDVDFFPLLVEYRERAYAA---GKIP-- 73

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA- 128
            G  +KRE   G+         R+  R++R +         Q+I    VI AD     A 
Sbjct: 74  -GGFIKRE---GKPTDEEILKARVTDRSIRPIFPKGFRNDVQVI--AFVISADQENDPAV 127

Query: 129 -AITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AI GA  ALH              +S++  +  V A+    + G  +++  Y E    D
Sbjct: 128 LAINGASAALH--------------ISRIPFEKPVGAVRVARVDGKLVINPSYEERQRAD 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +D     T+   +V V+G A+     ++     + LA + I  ++K Q ++
Sbjct: 174 IDLIVSGTEDA-VVMVEGGAKEV--PEEEVLDAILLAHEEIKKIVKAQDEL 221



 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 25/176 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR+ +++R IS+   +   A GS L   G T  L T TL    E ++   +   + 
Sbjct: 311 VRIDGRKPDEIRPISIEVGLLPRAHGSALFTRGQTQALVTTTLGTPEEYQLVEGLMPEEQ 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQR--MIGRALRSVVDLSALGSRQIII 114
                 Y   P   G       +S  +G   +EI    +  RAL  V+         I +
Sbjct: 371 KRFMLHYNFPPFCVGE------ISPMRGPGRREIGHGALAERALAPVIPPEEEFPYVIRV 424

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             D+++++G +  A + G  ++L D                 +K  VA I+ G++ 
Sbjct: 425 VSDILESNGSSSMATVCGGSLSLMDA-------------GVPIKAQVAGIAMGLIM 467


>gi|169831097|ref|YP_001717079.1| 3' exoribonuclease [Candidatus Desulforudis audaxviator MP104C]
 gi|257096687|sp|B1I393|PNP_DESAP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169637941|gb|ACA59447.1| 3' exoribonuclease [Candidatus Desulforudis audaxviator MP104C]
          Length = 741

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 29/207 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +RL GR  +++R+IS+   V     GS L + G T +L+  TL    +E++   +   + 
Sbjct: 324 VRLDGRAFDEIRDISVEVNVLPRTHGSGLFQRGQTQVLSVLTLGAVRDEQILDGLDTQET 383

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQR--MIGRALRSVVDLSALGSRQIII 114
                 Y     STG     EA   R  GR +EI    + GRAL +V+    +    I I
Sbjct: 384 KRFMHHYNFPSFSTG-----EARPIRSAGR-REIGHGALAGRALEAVLPGEDVFPYTIRI 437

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V+ ++G T  A++ G+ +AL D                 +K  VA I+ G++     
Sbjct: 438 VSEVLSSNGSTSMASVCGSCLALMDA-------------GVPIKAPVAGIAMGLIKEGDE 484

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197
              + D+   ED   D+D     T+ G
Sbjct: 485 VAVLTDIQGTEDHLGDMDFKVAGTEQG 511


>gi|11498105|ref|NP_069330.1| exosome complex RNA-binding protein Rrp42 [Archaeoglobus fulgidus
           DSM 4304]
 gi|29336575|sp|O29756|ECX2_ARCFU RecName: Full=Probable exosome complex exonuclease 2
 gi|83754328|pdb|2BA0|I Chain I, Archaeal Exosome Core
 gi|83754329|pdb|2BA0|H Chain H, Archaeal Exosome Core
 gi|83754330|pdb|2BA0|G Chain G, Archaeal Exosome Core
 gi|83754337|pdb|2BA1|G Chain G, Archaeal Exosome Core
 gi|83754338|pdb|2BA1|H Chain H, Archaeal Exosome Core
 gi|83754339|pdb|2BA1|I Chain I, Archaeal Exosome Core
 gi|295322010|pdb|3M7N|G Chain G, Archaeoglobus Fulgidus Exosome With Rna Bound To The
           Active Site
 gi|295322011|pdb|3M7N|H Chain H, Archaeoglobus Fulgidus Exosome With Rna Bound To The
           Active Site
 gi|295322012|pdb|3M7N|I Chain I, Archaeoglobus Fulgidus Exosome With Rna Bound To The
           Active Site
 gi|2650132|gb|AAB90743.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 259

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  ++ R++ +   V + AEGS LVK GDT ++    ++   P +      G I  
Sbjct: 23  RIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEP-YPDTPDRGVIIV 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL 107
              ++P ++          G     S E+ R++ R +R    VDLS L
Sbjct: 82  NAELVPLASPT-----FEPGPPDENSIELARVVDRGIRESEAVDLSKL 124


>gi|207742728|ref|YP_002259120.1| n terminus of a polyribonucleotide nucleotidyltransferase protein
           [Ralstonia solanacearum IPO1609]
 gi|206594122|emb|CAQ61049.1| probable n terminus of a polyribonucleotide nucleotidyltransferase
           protein [Ralstonia solanacearum IPO1609]
          Length = 481

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL  V+      +  I +
Sbjct: 375 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPKDDEFAYTIRL 427

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +AL D                 +K HVA ++ G++ 
Sbjct: 428 VSEITESNGSSSMASVCGGCLALMDA-------------GVPVKAHVAGVAMGLIL 470


>gi|255720833|ref|XP_002545351.1| exosome complex exonuclease RRP41 [Candida tropicalis MYA-3404]
 gi|240135840|gb|EER35393.1| exosome complex exonuclease RRP41 [Candida tropicalis MYA-3404]
          Length = 240

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 89/191 (46%), Gaps = 27/191 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKY---AEGSCLVKFGDTHLLTTATLEEKVPMWIR---NT 54
           +R+ GR+ N++R      R++ +   ++GS  V+ G+T ++   T++  +   +R   ++
Sbjct: 9   LRIDGRRWNELRRFEC--RINTHPNSSDGSSYVEQGNTKVV--CTVQGPIEPQLRSQQHS 64

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +H  I     +   +T  R KR     +   R  E++ ++ +     + ++      III
Sbjct: 65  EHANIEINLTIANFATFERKKR----NKNEKRLIELKNILEKTFMESIMINLYPRTNIII 120

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
           +  V+  DGG  +A      +AL D    M D             +V++I+CG+    P+
Sbjct: 121 NIQVLSQDGGLLSAITNSITLALIDSGISMYD-------------YVSSINCGLYDTTPL 167

Query: 175 VDLDYGEDSTI 185
           +DL+  E++ I
Sbjct: 168 LDLNNLEENDI 178


>gi|225848390|ref|YP_002728553.1| polynucleotide phosphorylase/polyadenylase [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|257096710|sp|C1DTW6|PNP_SULAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225644547|gb|ACN99597.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 707

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 22/174 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59
           +R+ GR+  ++R I +   V     GS +   G T    T TL       I  + + G +
Sbjct: 313 IRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSLSEGQIEESIEAGEV 372

Query: 60  TAE----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P STG      A S R+ G       +  RAL  ++         I + 
Sbjct: 373 MKRFMLHYNFPPFSTGEAKPPRATSRREIGHGN----LAERALEPLIPPEEEFPYAIRVV 428

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            D+++++G T  A + G  +AL D    M             K HVA I+ G++
Sbjct: 429 SDILESNGSTSMATVCGGSLALFDAGVPM-------------KKHVAGIAMGLI 469


>gi|313884899|ref|ZP_07818651.1| polyribonucleotide nucleotidyltransferase [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619590|gb|EFR31027.1| polyribonucleotide nucleotidyltransferase [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 698

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 33/228 (14%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRSTGN 72
           +V+K A G+ LV++G+T +L TA   +K       P+ +   +  +     G +P   G 
Sbjct: 21  QVAKQASGAVLVRYGETVVLATAVGSKKAGTGDFFPLTVNYEEKMYAV---GKVP---GG 74

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR    +    R+I R +R +         QI+     +  D     AA+ G
Sbjct: 75  FLKRE---GRPSEHATLTARLIDRPIRPMFPDGVRNEVQIVATVLSVDQDNSPEMAAMFG 131

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
           A +AL      + D            G +A +    + G  I++    + +T ++D    
Sbjct: 132 ASLAL-----GVSDVP--------FDGPIAGVKVARVDGQLIINPSVDQLATTEIDLTVA 178

Query: 193 MTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            T +  ++VE    ++ A   +      L    + I +L+  Q+++IS
Sbjct: 179 GTKTAINMVE----SDAAEVPEAEMLEALLFGHEAIKELVAFQEEIIS 222



 Score = 35.8 bits (81), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 32/209 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  L+ ATL    E ++   +    +
Sbjct: 317 VRPDGRKIDEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVATLAPLREHQIIDGLGTEDY 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQG--GRSQEIQRMIG-RALRSVVDLSALGSRQII 113
                 Y   P S G        +GR G  GR +     +G RAL+ V+         I 
Sbjct: 377 KRFMHHYNFPPYSVGE-------TGRMGSPGRREVGHGALGERALKHVIPSEEEFPYVIR 429

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---- 169
           +  +V++++G +  A+I G+ +A+ D                 +K  VA I+ G++    
Sbjct: 430 LVSEVLESNGSSSQASICGSTLAMMDA-------------GIPIKAPVAGIAMGLVMDDD 476

Query: 170 CGYPIV-DLDYGEDSTIDVDANFVMTDSG 197
             Y I+ D+   ED   D+D     T  G
Sbjct: 477 ADYTILTDIQGLEDHLGDMDFKVAGTAKG 505


>gi|310798773|gb|EFQ33666.1| 3' exoribonuclease family protein [Glomerella graminicola M1.001]
          Length = 266

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 83/196 (42%), Gaps = 28/196 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHG 57
           +R+ GR+ N++R +    R  + A+GS  ++ G T ++   T  T  ++       TK  
Sbjct: 13  LRVDGRRWNELRRLHAQIRTQEAADGSSYLEMGHTKVMCVVTGPTEPQRRGGAGGQTKEA 72

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +T    +   S+ +R KR    GR   R+QE++  I +A+ + +         I I   
Sbjct: 73  AVTVNLVVAGFSSVDRRKR----GRNDKRTQELEATIAKAVSANLHTHLFPHSSISISLH 128

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           V+  DG    A +  + +AL D    M D             ++AA + G    Y     
Sbjct: 129 VLSQDGSLLAALLNASTLALIDAGIPMTD-------------YIAACTAGSTSTYAAADD 175

Query: 173 ---PIVDLDYGEDSTI 185
              P++DL+  E+  +
Sbjct: 176 GADPLLDLNTQEEQEL 191


>gi|195472532|ref|XP_002088554.1| GE11809 [Drosophila yakuba]
 gi|194174655|gb|EDW88266.1| GE11809 [Drosophila yakuba]
          Length = 246

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 9/140 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK-HGWI 59
           +RL GR+ +++R I     V +  +GS  ++ G+T +L         P   +  +    I
Sbjct: 13  LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVY----GPHQAKGKQTESII 68

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y     ST  R  R     R   +S E +  + +AL + +        QI I  +V+
Sbjct: 69  NCQYSQATFSTAERKNRP----RGDRKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEVL 124

Query: 120 QADGGTRTAAITGAWVALHD 139
           QADG     A+  A +AL D
Sbjct: 125 QADGANYAVALNAATLALID 144


>gi|257094905|ref|YP_003168546.1| polynucleotide phosphorylase/polyadenylase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047429|gb|ACV36617.1| Polyribonucleotide nucleotidyltransferase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 706

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 27/175 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I++   V   A GS L   G+T  +  ATL    +E++   +      
Sbjct: 315 RIDGRDTRTVRPIAIRSGVLPRAHGSSLFTRGETQAIVVATLGTGRDEQIIDALSGEYRE 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P +TG         GR G  + +E+   R+  RAL +V+      S  I +
Sbjct: 375 RFMLHYNFPPYATGE-------CGRVGTPKRREVGHGRLAKRALLAVLPAPEDFSYTIRV 427

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D                 LK HVA I+ G++
Sbjct: 428 VSEITESNGSSSMASVCGASLALMDA-------------GVPLKAHVAGIAMGLI 469


>gi|167754065|ref|ZP_02426192.1| hypothetical protein ALIPUT_02353 [Alistipes putredinis DSM 17216]
 gi|167658690|gb|EDS02820.1| hypothetical protein ALIPUT_02353 [Alistipes putredinis DSM 17216]
          Length = 737

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           RL GR+ +++R I         A GS +   G+T  LTT TL    +EKV   +      
Sbjct: 324 RLDGRRTDEIRPIWCEVGYLPAAHGSAIFTRGETQSLTTVTLGTKMDEKVKDEVLVQGTE 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG       +S R+ G       +  RAL+ +V +       + +  D
Sbjct: 384 QFVLHYNFPPFSTGEAKAARGLSRREIGHGH----LAWRALKPMVPVGEENPYAVRVVSD 439

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           +++++G +  A +    +AL D 
Sbjct: 440 ILESNGSSSMATVCAGTLALMDA 462



 Score = 35.4 bits (80), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 19/119 (15%)

Query: 12  REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEY 63
           REI + T +++K A+GS +VK GDT LL T    +        +P+ +   +      +Y
Sbjct: 20  REIMIETGKLAKQADGSVVVKMGDTMLLGTVVAAKDAKPDTDFMPLQVEYKE------KY 73

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
               R  G  +KRE   G+       + R+I RALR +    +    ++ +  ++I AD
Sbjct: 74  AACGRYPGGFMKRE---GKANDSEILVARLIDRALRPL--FPSDYHAEVYVTVNLISAD 127


>gi|91774427|ref|YP_544183.1| polynucleotide phosphorylase/polyadenylase [Methylobacillus
           flagellatus KT]
 gi|123078691|sp|Q1GXD2|PNP_METFK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|91708414|gb|ABE48342.1| 3' exoribonuclease [Methylobacillus flagellatus KT]
          Length = 714

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 87/207 (42%), Gaps = 31/207 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R IS+   V     GS L   G+T  L  ATL    +E++   ++     
Sbjct: 315 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDALQGEYAD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL +V+         I +
Sbjct: 375 RFMLHYNMPPYATGE-------TGRVGTPKRREIGHGRLAKRALLAVLPSQEEFGYTIRV 427

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             ++ +++G +  A++ G  ++L D                 LK HVA I+ G++     
Sbjct: 428 VSEITESNGSSSMASVCGGCLSLLDA-------------GVPLKAHVAGIAMGLIKEGNR 474

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197
              + D+   ED   D+D     T+SG
Sbjct: 475 VAVLTDILGDEDHLGDMDFKVAGTESG 501


>gi|217967533|ref|YP_002353039.1| Polyribonucleotide nucleotidyltransferase [Dictyoglomus turgidum
           DSM 6724]
 gi|254782720|sp|B8E2S5|PNP_DICTD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|217336632|gb|ACK42425.1| Polyribonucleotide nucleotidyltransferase [Dictyoglomus turgidum
           DSM 6724]
          Length = 693

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 24/173 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGW 58
           R+ GR+ N++R +S    V     GS L + G+T +L+  TL   EE++   +  ++   
Sbjct: 315 RVDGRRLNELRPVSCEVGVLSRVHGSALFQRGETQVLSVVTLGAGEEQIIESVIESEPKR 374

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQR--MIGRALRSVVDLSALGSRQIIIDC 116
               Y   P S G     EA   R G + +EI    +  RAL  ++         I +  
Sbjct: 375 YIHHYNFPPFSVG-----EAKPLR-GPKRREIGHGALAERALLPLIPKEEEFPYTIRVVS 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           +V+ ++G T  A++ G+ ++L D                 +K HVA ++ G++
Sbjct: 429 EVLSSNGSTSMASVCGSSLSLMDA-------------GVPIKTHVAGVAMGLI 468


>gi|119872347|ref|YP_930354.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum islandicum
           DSM 4184]
 gi|119673755|gb|ABL88011.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum islandicum DSM
           4184]
          Length = 274

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 94/238 (39%), Gaps = 25/238 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+  ++R I +   V K A+GS  VK G TH++    +    P +      G +  
Sbjct: 29  RIDGREPERIRNIEIKTSVIKTADGSAEVKLGKTHVVAGVKVSLGQP-FPDAPDEGVLVV 87

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL---GSRQII--I 114
              +LP ++          G     + E+ R+I R +R    VD   L   G +  +  +
Sbjct: 88  NAEVLPHASPY-----TEVGPPDEFAIELARVIDRGIRHCGYVDFKKLVVEGGKAYVLWV 142

Query: 115 DCDVIQADGG---------TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS 165
           D  VI  DG                T   V + D      D +NK  L   +     A+S
Sbjct: 143 DLYVINDDGNLIDAANLAAVAALKDTQLPVVVKDEQGVKLDRNNKTPLPIEVSKAPIAVS 202

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
            G + G   +D  + E+ ++D    F +++   IV VQ +    TF+       L LA
Sbjct: 203 VGKIGGVLFLDPTFEEELSLDGRITFTISED-RIVAVQKTI--GTFTSQELEMALELA 257


>gi|319941417|ref|ZP_08015745.1| polyribonucleotide nucleotidyltransferase [Sutterella
           wadsworthensis 3_1_45B]
 gi|319805037|gb|EFW01867.1| polyribonucleotide nucleotidyltransferase [Sutterella
           wadsworthensis 3_1_45B]
          Length = 707

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 89/203 (43%), Gaps = 23/203 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I + + V     GS L   G+T  L T TL    +E++   +   +H 
Sbjct: 322 RIDGRDTRTVRPIEIRQGVLPRTHGSALFTRGETQALVTTTLGTKQDEQIIDGLCEEQHD 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL++V+         + +
Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALKAVLPSPEEFQYTLRV 434

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++ +++G +  A++ G  +++ D    ++D      +  + +G+  A+         +
Sbjct: 435 VSEICESNGSSSMASVCGGCLSMLDAGVPLKDYVAGVAMGLIKEGNRFAV---------L 485

Query: 175 VDLDYGEDSTIDVDANFVMTDSG 197
            D+   ED   D+D     T++G
Sbjct: 486 TDILGDEDHLGDMDFKVAGTENG 508


>gi|311253303|ref|XP_003125499.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1 [Sus
           scrofa]
          Length = 245

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 35/250 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L         P  IR ++      
Sbjct: 13  RVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRSRALPD 68

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113
              +  +Y     STG R +R       G R S E+   + +A  + + L+ L  R QI 
Sbjct: 69  RALVNCQYSSATFSTGERKRRP-----HGDRKSCEMGLQLRQAFEAAI-LTQLHPRSQID 122

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           I   V+QADGG   A +  A +A+ D    M D              V A S G + G  
Sbjct: 123 IYVQVLQADGGIYAACVNVATLAVLDAGIPMRD-------------FVCACSAGFVDGTA 169

Query: 174 IVDLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           + DL + E++      A  ++  SG I  ++  A      +DH   +L  A     D+  
Sbjct: 170 LADLSHVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAARDVHT 226

Query: 233 LQKDVISNEV 242
           +   V+   V
Sbjct: 227 VLDRVVRQHV 236


>gi|82703668|ref|YP_413234.1| polynucleotide phosphorylase/polyadenylase [Nitrosospira
           multiformis ATCC 25196]
 gi|123740603|sp|Q2Y5X9|PNP_NITMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|82411733|gb|ABB75842.1| 3' exoribonuclease [Nitrosospira multiformis ATCC 25196]
          Length = 701

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 29/176 (16%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R I++   +     GS L   G+T  L  ATL     E+K+     +   
Sbjct: 314 RIDGRDTRTVRPITIRTGLLPRTHGSALFTRGETQALVVATLGTGRDEQKIDALQGDYSE 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQII 113
            ++   Y M P +TG        +GR G  + +EI   R+  RAL +V+         + 
Sbjct: 374 RFML-HYNMPPYATGE-------TGRVGTPKRREIGHGRLAKRALVAVLPSPEEFGYSLR 425

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           +  ++ +++G +  A++ G  +AL D                 LKGHVA I+ G++
Sbjct: 426 VVSEITESNGSSSMASVCGGCLALMDA-------------GVPLKGHVAGIAMGLI 468


>gi|254468592|ref|ZP_05081998.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium
           KB13]
 gi|207087402|gb|EDZ64685.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium
           KB13]
          Length = 710

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 27/175 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R I ++  V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 320 RIDGRDTRTVRPIEISTSVLPRTHGSALFTRGETQALAVATLGTPRDAQIIDALQGEYTD 379

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P STG        +GR G  + +EI   R+  RAL +V+         I +
Sbjct: 380 RFMLHYNFPPFSTGE-------TGRVGSPKRREIGHGRLAKRALLAVLPEQEDFDYTIRL 432

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++++++G +  A++ G  +A+ D                 LK HVA I+ G++
Sbjct: 433 VSEIMESNGSSSMASVCGGCMAMLDA-------------GVPLKSHVAGIAMGLI 474


>gi|207723868|ref|YP_002254266.1| polyribonucleotide nucleotidyltransferase protein [Ralstonia
           solanacearum MolK2]
 gi|206589073|emb|CAQ36035.1| polyribonucleotide nucleotidyltransferase protein [Ralstonia
           solanacearum MolK2]
          Length = 752

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL  V+      +  I +
Sbjct: 375 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPKDDEFAYTIRL 427

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +AL D                 +K HVA ++ G++ 
Sbjct: 428 VSEITESNGSSSMASVCGGCLALMDA-------------GVPVKAHVAGVAMGLIL 470


>gi|123968917|ref|YP_001009775.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. AS9601]
 gi|187610314|sp|A2BSA7|PNP_PROMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123199027|gb|ABM70668.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. AS9601]
          Length = 721

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 101/236 (42%), Gaps = 32/236 (13%)

Query: 12  REISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYG 64
           REI LT  + +  A GS +++ GDT LL TAT   K      +P+ I + +     A  G
Sbjct: 13  REIRLTTGLYAPQASGSVMIECGDTSLLVTATKTAKKEPSDFLPL-ICDYEEKLFAA--G 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G  ++RE   GR   R+  I R+I R +R +         QI+  C  +     
Sbjct: 70  RIP---GGFMRRE---GRPPERATLIARLIDRPMRPLFPTWMGDEIQIVASCLSLDERVP 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+TGA +A                      G +AA+  G++    I++  Y E   
Sbjct: 124 ADVLAVTGASIA-------------TLVGEIPFYGPMAAVRVGLIGDDFILNPSYREIEK 170

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            D+D     +  G IV ++  A +   S+      ++   + + +LIK Q+D++ +
Sbjct: 171 GDLDIVVAGSPDG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVTELIKSQEDLLQD 223


>gi|291386759|ref|XP_002709750.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1 [Oryctolagus
           cuniculus]
          Length = 784

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 39/210 (18%)

Query: 9   NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAE 62
           N+  EIS + +++++A+GS +V+ GDT ++ TA  + K      +P+ +   +     A 
Sbjct: 53  NRKLEIS-SGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AA 108

Query: 63  YGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            G +P    N ++RE      G   +EI   R+I R++R +         Q++  C+++ 
Sbjct: 109 AGRIPT---NYLRREI-----GSSDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLA 158

Query: 121 ADGGTRT--AAITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDL 177
            DG       AI GA VAL               LS +   G V A+  GM+ G  +V+ 
Sbjct: 159 VDGINEPDVLAINGASVAL--------------SLSDIPWNGPVGAVRIGMIDGECVVNP 204

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207
              E S+  ++          IV ++ SAE
Sbjct: 205 TRKEMSSSTLNLVVAGAPKSQIVMLEASAE 234


>gi|297584087|ref|YP_003699867.1| polyribonucleotide nucleotidyltransferase [Bacillus
           selenitireducens MLS10]
 gi|297142544|gb|ADH99301.1| polyribonucleotide nucleotidyltransferase [Bacillus
           selenitireducens MLS10]
          Length = 700

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 103/232 (44%), Gaps = 30/232 (12%)

Query: 15  SLTRRVSKYAE---GSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
           +L+  V KYA+   G+ +VK+GDT +L+TAT  ++   +P +     +       G +P 
Sbjct: 16  TLSFEVGKYAKQANGAVMVKYGDTTVLSTATGSKEPKDLPFFPLTVNYEERLYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR    +    R+I R +R +         Q+I        +  +  A
Sbjct: 75  --GGFIKRE---GRPSDNAVLTSRLIDRPIRPLFPDGYRNDVQVISIVMSSDQNASSEMA 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL      + D            G +A ++ G + G  I++    + +  D+D
Sbjct: 130 AMIGSSMAL-----SISDIP--------FGGPIAGVTVGRVNGEFIINPTTTQMADSDID 176

Query: 189 ANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                T D+ ++VE    AE+    +D   A+L    D I  L+  Q+++I+
Sbjct: 177 LIVAGTKDAVNMVE--AGAEQVP-EEDMMDAIL-FGHDEIKRLVAFQEEIIA 224


>gi|152993469|ref|YP_001359190.1| polynucleotide phosphorylase/polyadenylase [Sulfurovum sp. NBC37-1]
 gi|187611305|sp|A6QBH4|PNP_SULNB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|151425330|dbj|BAF72833.1| polyribonucleotide nucleotidyltransferase [Sulfurovum sp. NBC37-1]
          Length = 729

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 98/246 (39%), Gaps = 34/246 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNT 54
           +R  GR  +++R I++   +     GSCL   G T  L TATL +K    +      +NT
Sbjct: 344 IRADGRGLDEVRPITIETNILPSVHGSCLFTRGQTQALVTATLGDKKDAQMFELITDKNT 403

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +       Y       G  V      G  G R      +  RAL  V+ ++  G+ +++ 
Sbjct: 404 QSENFMVHYNF----PGYSVGEAKFIGAPGRRELGHGNLAKRALEPVIPINYDGTIRLV- 458

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             +V++++G +  A I G  +AL      M +      +  V  G   A+         +
Sbjct: 459 -SEVLESNGSSSMATICGGALALRAAEVDMVELVAGIAMGLVTDGERVAV---------L 508

Query: 175 VDLDYGEDSTIDVDANFVMTDSG-------------HIVEVQGSAERATFSQDHFFAMLN 221
            D+   ED   D+D     T +G              ++ ++ + E+A   +DH   ++ 
Sbjct: 509 TDIMGLEDHDGDMDFKIAGTRNGITALQMDIKLGGIDLITLKVALEKAAQGKDHILDLME 568

Query: 222 LAKDRI 227
            A+ ++
Sbjct: 569 EAEKKM 574


>gi|223945461|gb|ACN26814.1| unknown [Zea mays]
          Length = 306

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 100/262 (38%), Gaps = 51/262 (19%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+  R+  + R  ++       A GS LV+ GDT +L +  LE   P        G ++
Sbjct: 39  VRIDARRLREARTTTVALGAVSSAHGSALVRVGDTAMLASVKLEVMSPSA-EYPDEGSVS 97

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV---------DLSALGSRQ 111
            E+ M P  +            + GRS E+  +I +AL  V+         DL  +  + 
Sbjct: 98  VEFHMPPICS---------PLVRPGRSAEVAPVISKALEDVLMSSRMLNLKDLCLITGKA 148

Query: 112 ---IIIDCDVIQADGGTRTAAITGAWVALHDCLQHME------------------DCSNK 150
                +D   + ADG    AA+  A  A      H+E                  D  NK
Sbjct: 149 SWLAYLDIYCLNADGSLFDAALISAVAAF----THLEIPLVSVGDDGKLFTVGGNDGKNK 204

Query: 151 FQLSQVLKGHVA------AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
           F+L    K  +       +++C +  G  + D    E+S I+     V+  S  +V +Q 
Sbjct: 205 FELVNREKRKLTLGDIPLSLTCALHKGSILTDPTSEEESIIETYVTVVVDSSDRLVSLQK 264

Query: 205 SAERATFSQDHFFAMLNLAKDR 226
                T S       ++LAK+R
Sbjct: 265 VGGTVT-SMATIKECISLAKER 285


>gi|311253305|ref|XP_003125500.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 2 [Sus
           scrofa]
          Length = 243

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 98/244 (40%), Gaps = 25/244 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L       +            +  
Sbjct: 13  RVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASGRAPLPDRALVNC 72

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QIIIDCDVI 119
           +Y     STG R +R       G R S E+   + +A  + + L+ L  R QI I   V+
Sbjct: 73  QYSSATFSTGERKRRP-----HGDRKSCEMGLQLRQAFEAAI-LTQLHPRSQIDIYVQVL 126

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGG   A +  A +A+ D    M D              V A S G + G  + DL +
Sbjct: 127 QADGGIYAACVNVATLAVLDAGIPMRD-------------FVCACSAGFVDGTALADLSH 173

Query: 180 GEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E++      A  ++  SG I  ++  A      +DH   +L  A     D+  +   V+
Sbjct: 174 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAARDVHTVLDRVV 230

Query: 239 SNEV 242
              V
Sbjct: 231 RQHV 234


>gi|240104092|ref|YP_002960401.1| exosome complex RNA-binding protein Rrp42 [Thermococcus
           gammatolerans EJ3]
 gi|259645408|sp|C5A2B8|ECX2_THEGJ RecName: Full=Probable exosome complex exonuclease 2
 gi|239911646|gb|ACS34537.1| 3'-5' exoribonuclease, exosome complex exonuclease 2, Rrp42p-like
           protein (Rrp42p) [Thermococcus gammatolerans EJ3]
          Length = 273

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 101/248 (40%), Gaps = 23/248 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   + R+I +     + AEGS  V+ G T +L    ++   P +      G +T 
Sbjct: 24  RIDGRSFEEYRDIEIKTGFIEKAEGSAWVRLGGTRVLVGIKVDVGEP-FPDLPDRGVMTT 82

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALG------SRQII 113
              ++P ++          G    R+ E+ R+I R +R    V+L  L        R + 
Sbjct: 83  NVELVPLASPT-----FEPGPPDERAIELARVIDRGIRESQAVELEKLVIVPGKLVRVVF 137

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQLSQ---VLKGHVA-AIS 165
           ID  V+  DG    A    A  AL       +++ E+     +L +   +   HV   ++
Sbjct: 138 IDVHVLDHDGNLFDATGLAAMAALMTTKIPKVEYNEETGEIIKLDEYEPLPVKHVPIPVT 197

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
              +    IVD +  E++ +D        ++GHI  VQ   E  +F  +     ++ A  
Sbjct: 198 FAKIGSSIIVDPNLDEETVMDSRLTITTDETGHISAVQ-KGEGGSFKLEEVMYAIDTALK 256

Query: 226 RIADLIKL 233
           +  +L K+
Sbjct: 257 KADELRKI 264


>gi|297811589|ref|XP_002873678.1| hypothetical protein ARALYDRAFT_488299 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297319515|gb|EFH49937.1| hypothetical protein ARALYDRAFT_488299 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 992

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 75/186 (40%), Gaps = 26/186 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
            R+ GR  +++R I           GS L   GDT +L T TL      + +   +   K
Sbjct: 363 FRVDGRHLDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPGEAQSLDSLVGPPK 422

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P  T    KR  ++ R+ G       +  +AL +V+         + I+
Sbjct: 423 KRFML-HYSFPPYCTNEVGKRGGLNRREVGHGT----LAEKALLAVLPPEEAFPYTVRIN 477

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            +V+ +DG T  A++ G  +AL D                 L+ HVA +S G++     V
Sbjct: 478 SEVMSSDGSTSMASVCGGSMALMDA-------------GIPLRAHVAGVSVGLITD---V 521

Query: 176 DLDYGE 181
           D   GE
Sbjct: 522 DPSSGE 527


>gi|68466049|ref|XP_722799.1| likely exosome component Ski6p [Candida albicans SC5314]
 gi|68466344|ref|XP_722654.1| likely exosome component Ski6p [Candida albicans SC5314]
 gi|46444644|gb|EAL03917.1| likely exosome component Ski6p [Candida albicans SC5314]
 gi|46444799|gb|EAL04071.1| likely exosome component Ski6p [Candida albicans SC5314]
          Length = 240

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 27/188 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKY---AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG 57
           +R+ GR+ N++R      R++ +   ++GS  V+ G+T ++   T++  +   +R+ +H 
Sbjct: 9   LRIDGRRWNELRRFEC--RINTHPNSSDGSSYVEQGNTKVM--CTVQGPIEPALRSQQHS 64

Query: 58  W---ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
               I     +   ST  R KR     R   R  E++  + +     V ++      I+I
Sbjct: 65  ERANIEVNLNIASFSTFERKKR----SRNERRLVELKTTLEKTFEESVMINLYPRTNIVI 120

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
           +  V+  DGG   A I    +AL D    M D             +V+ +SCG+    P+
Sbjct: 121 NVQVLCQDGGMLAAVINSITLALIDAGISMYD-------------YVSGVSCGLYDQTPL 167

Query: 175 VDLDYGED 182
           +D++  E+
Sbjct: 168 LDVNNLEE 175


>gi|312143658|ref|YP_003995104.1| polyribonucleotide nucleotidyltransferase [Halanaerobium sp.
           'sapolanicus']
 gi|311904309|gb|ADQ14750.1| polyribonucleotide nucleotidyltransferase [Halanaerobium sp.
           'sapolanicus']
          Length = 696

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 96/228 (42%), Gaps = 33/228 (14%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRST 70
           T +++K A GS +V+ GD+ +L TAT++E        P+ +   +  +     G +P   
Sbjct: 17  TGKLAKQANGSVMVRSGDSQVLVTATMDEPRPGMNYFPLMVNYEERVYA---IGKIP--- 70

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G  ++RE   GR    +    R+I R++R +         Q++     +  D      A+
Sbjct: 71  GGVLRRE---GRPRDEATLAARVIDRSIRPLFPDGYRKDVQVVATILSVDDDHDPEMLAL 127

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
            GA +AL               +S +   G +  +  G++ G  I++ +  E    ++D 
Sbjct: 128 NGASIAL--------------TISDIPFDGPIGGVKVGLVDGEIIINPNEEERENSELDL 173

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
             V      I+ V+ SA      +      ++LA   I  +IK+QK +
Sbjct: 174 -VVAGSKDAIMMVEASANEV--EEAVILEAMDLAHQEIQKMIKIQKTI 218


>gi|332654600|ref|ZP_08420343.1| polyribonucleotide nucleotidyltransferase [Ruminococcaceae
           bacterium D16]
 gi|332516564|gb|EGJ46170.1| polyribonucleotide nucleotidyltransferase [Ruminococcaceae
           bacterium D16]
          Length = 716

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 25/174 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKV-PMWIRNTK 55
           R+ GR +N++R ++    V     GS L   G T +L+  TL      +K+  +W  + K
Sbjct: 322 RVDGRAKNEIRPLAAEVGVLPRVHGSGLFTRGQTQVLSVCTLNTLAACQKLDTIWEEDEK 381

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P S G      + + R+ G     +R +   L SV +        I + 
Sbjct: 382 R--YMHHYNFPPYSVGEARAPRSTNRREYGHGALAERALVPVLPSVEEF----PYAIRVV 435

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            +V+ ++G T   +I G+ +AL D                 +K  VA ISCG++
Sbjct: 436 SEVLSSNGSTSQGSICGSTLALMDA-------------GVPIKAPVAGISCGLI 476


>gi|33863644|ref|NP_895204.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9313]
 gi|81577177|sp|Q7V606|PNP_PROMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33635227|emb|CAE21552.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. MIT 9313]
          Length = 723

 Score = 43.5 bits (101), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 98/236 (41%), Gaps = 32/236 (13%)

Query: 12  REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64
           REI LT  R +  A GS +++ GDT +L TAT        + +P+     +  +      
Sbjct: 13  REIRLTTGRYAPQAGGSVMMECGDTAVLVTATRSTGREGIDFLPLICDYEERLYAAG--- 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R  G+ ++RE   GR   R+  I R+I R +R +         QI+  C  +     
Sbjct: 70  ---RIPGSFMRRE---GRPPERATLIARLIDRPMRPLFPSWMRDDLQIVATCLSLDERVP 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+TGA +A                 S   +G +AA+  G+L    +++  Y E   
Sbjct: 124 ADVLAVTGASMA-------------TLLASIPFQGPMAAVRVGLLGDDFVLNPSYREIER 170

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            D+D     T  G +V V+  A +    Q      ++   + + +LIK Q+ ++ +
Sbjct: 171 GDLDLVVAGTPDG-VVMVEAGANQ--LPQGDVIEAIDFGYEAVCELIKAQQTILKD 223


>gi|301166788|emb|CBW26365.1| putative polyribonucleotide nucleotidyltransferase [Bacteriovorax
           marinus SJ]
          Length = 709

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R++GR   ++REI     + ++  GS L   G+T ++   T+     EK+   IR T+  
Sbjct: 323 RIAGRGMTEVREIETEANLLEHVHGSSLFTRGETQVMAAVTIGGKHGEKMEDSIRGTEFQ 382

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G       V  R+ G     +R +   + S  +  A  +R +   C+
Sbjct: 383 KFYLHYNFPPFSVGEARGVRGVGRRELGHGNLAERAVKAVMPSEEEF-AYTTRVV---CE 438

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           V++++G +   ++  A +AL D 
Sbjct: 439 VMESNGSSSMGSVCSASMALMDA 461


>gi|312080640|ref|XP_003142686.1| hypothetical protein LOAG_07104 [Loa loa]
 gi|307762153|gb|EFO21387.1| hypothetical protein LOAG_07104 [Loa loa]
          Length = 521

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 17/144 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ ++ RE+ +   +     GSCLV  G+T +L   +     P  +R    G +  
Sbjct: 151 RIDGRKCDEFREVKV---IVGSELGSCLVMLGETKVLAQVSCSLVEPSTVRGN-MGTVEV 206

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSR------QII 113
              M P ++ +        GR G +  E+ R++    R+  V+DL +L  R      QI 
Sbjct: 207 HVDMSPMASPD-----YEDGRLGSKGLELMRILELLYRNSGVIDLESLCLRTFKQVWQIR 261

Query: 114 IDCDVIQADGGTRTAAITGAWVAL 137
           ID  V+ +DG     A   +  AL
Sbjct: 262 IDVHVLASDGSLVDCACIASLTAL 285


>gi|156398683|ref|XP_001638317.1| predicted protein [Nematostella vectensis]
 gi|156225437|gb|EDO46254.1| predicted protein [Nematostella vectensis]
          Length = 268

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 5/136 (3%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ +++R + L   V   A+GS  ++  +T ++       + P     +  G +T 
Sbjct: 36  RQDGRRPDELRPMFLRAGVVSQAKGSAYIEMKNTKVICAIYGPREAPRRQEFSMKGRLTC 95

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           E+   P S   R K       Q    +E   ++ +AL   V L      Q+ I   V++ 
Sbjct: 96  EFKFAPFSCIYRRKH-----IQDAEEKENSYLVVQALEPAVCLEKFPKAQVDIYITVLEN 150

Query: 122 DGGTRTAAITGAWVAL 137
           DG   +A I  A VAL
Sbjct: 151 DGSALSAGIICASVAL 166


>gi|148263963|ref|YP_001230669.1| polynucleotide phosphorylase/polyadenylase [Geobacter
           uraniireducens Rf4]
 gi|187610269|sp|A5GF91|PNP_GEOUR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146397463|gb|ABQ26096.1| Polyribonucleotide nucleotidyltransferase [Geobacter uraniireducens
           Rf4]
          Length = 696

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 38/221 (17%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R+I+    +   A GS L   G+T  L  ATL     E+++      +K 
Sbjct: 312 RIDGRDTKTIRQITTEVSLLPRAHGSALFTRGETQSLVAATLGTSIDEQRIDSLFGESKK 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++   Y   P S G    R     R+ G     +R + R L    D        I I  
Sbjct: 372 RFLL-HYNFPPFSVGETSFRLGPGRREIGHGMLAERALARVLPKHDDF----PYTIRIVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           D+++++G +  A++ G  +++ D                 +K  VA I+ G+        
Sbjct: 427 DILESNGSSSMASVCGGSMSMMDA-------------GIPIKAPVAGIAMGL-------- 465

Query: 177 LDYGEDSTIDVDANFVMTDSGHI----VEVQGSAERATFSQ 213
           +  GED  I  D   ++ D  H+     +V G+AE  T  Q
Sbjct: 466 IKEGEDFAILSD---ILGDEDHLGDMDFKVAGTAEGVTALQ 503


>gi|255711166|ref|XP_002551866.1| KLTH0B01738p [Lachancea thermotolerans]
 gi|238933244|emb|CAR21428.1| KLTH0B01738p [Lachancea thermotolerans]
          Length = 245

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 20/188 (10%)

Query: 1   MRLSGRQENQMREISLTRRV-SKYAEGSCLVKFGDTHLLT--TATLEEKVPMWIRNTKHG 57
           +R+ GR+ N++R +  +    +  ++GS  ++ G+  ++T  T   E K+   +  TK  
Sbjct: 12  LRVDGRRWNELRRLECSINTHANASDGSSYLEQGNNKVITLVTGPQEPKLRSQMNVTKAT 71

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
              A    L  +  ++++R   S +   R  E+Q  + R     V L      QI I   
Sbjct: 72  ISVA----LNITRFSKIERSKSSHKNERRVLEMQTALVRTFEKNVMLHLYPRTQIEIQIH 127

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+Q DGG  ++ I G  +AL D    M D             +++ +S G+    P++DL
Sbjct: 128 VLQQDGGLMSSLINGITLALIDAGIAMYD-------------YISGVSIGLYDTTPLLDL 174

Query: 178 DYGEDSTI 185
           +  E++ +
Sbjct: 175 NSVEENAM 182


>gi|150388833|ref|YP_001318882.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus
           metalliredigens QYMF]
 gi|187470925|sp|A6TM05|PNP2_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 2; AltName:
           Full=Polynucleotide phosphorylase 2; Short=PNPase 2
 gi|149948695|gb|ABR47223.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus
           metalliredigens QYMF]
          Length = 702

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 23/162 (14%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74
           +V++ A+GSC++K+GDT +L TA      +E +  +  +  +       G +P   G  +
Sbjct: 20  KVAELAQGSCMIKYGDTFVLVTACASKEPKEGLDFFPLSCDYEEKLYAVGKIP---GGFI 76

Query: 75  KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
           KRE+   R   ++    R+I R +R +         Q+I     +  D     +A+ G+ 
Sbjct: 77  KRES---RPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATVLSVDQDCPPDISAMIGSS 133

Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +AL          SN         G  A++S GM+ G  IV+
Sbjct: 134 IAL--------SVSN-----IPFMGPTASVSVGMIDGKYIVN 162


>gi|52550471|gb|AAU84320.1| 3'-5' exoribonuclease [uncultured archaeon GZfos9D1]
          Length = 257

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 8/108 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   + REIS+ R V K AEGS  VK GDT +L    +E   P +      G I  
Sbjct: 23  REDGRGFREYREISVERDVIKRAEGSARVKIGDTEVLVGVKVELGTP-FPDTPDKGVIIT 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL 107
              ++P ++    K E  SG     S ++ R++ R +R    +DL  L
Sbjct: 82  NAELVPLAS---PKFE--SGPPNENSIQLARVVDRGIRGSETIDLDKL 124


>gi|319944048|ref|ZP_08018328.1| polyribonucleotide nucleotidyltransferase [Lautropia mirabilis ATCC
           51599]
 gi|319742809|gb|EFV95216.1| polyribonucleotide nucleotidyltransferase [Lautropia mirabilis ATCC
           51599]
          Length = 704

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R IS+   V   A GS L   G+T  L  ATL    +E++   I      
Sbjct: 315 RIDGRDTRTVRPISIRTGVLPRAHGSALFTRGETQALVVATLGTARDEQIIDAITGEYRE 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
               +Y M P +TG   +      R+ G      R+  RA+ ++V      +  I +  +
Sbjct: 375 RFMMQYNMPPYATGETGRIGTPKRREVGHG----RLAKRAITALVPSQEDFAYSIRLVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A++ G  +AL D    +E              HVA I+ G++
Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVER-------------HVAGIAMGLI 469


>gi|226504202|ref|NP_001146469.1| hypothetical protein LOC100280057 [Zea mays]
 gi|219887423|gb|ACL54086.1| unknown [Zea mays]
          Length = 240

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 99/257 (38%), Gaps = 48/257 (18%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R  + T      A GS     GDT +L            +   K G    
Sbjct: 7   RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAA----------VYGPKSG---T 53

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
             G  P      V  +  +G+ G + +E +  + R L+S+  L+   +    +   V+  
Sbjct: 54  RKGENPEKASIEVVWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGD 113

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA-AISCGML-CGYPIVDLDY 179
           DG   + AI  +  AL                + +   H+A AISCG++  G  I+D   
Sbjct: 114 DGSLMSCAINASCAAL--------------AFAGIPMKHLAVAISCGVMDNGVVILDTSR 159

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAER--------------ATFSQDHFFAMLN---L 222
            E+      A+ V  +S   VE + + +R                 S+D +F  +    +
Sbjct: 160 AEEQQARSFAHLVFPNSRKSVESKDTTQRDEESERGLITCITHGAMSEDDYFNCIERGVM 219

Query: 223 AKDRIADLIK--LQKDV 237
           A  RI+D ++  LQK+ 
Sbjct: 220 ASSRISDFMRKTLQKEA 236


>gi|193214790|ref|YP_001995989.1| polynucleotide phosphorylase/polyadenylase [Chloroherpeton
           thalassium ATCC 35110]
 gi|226702635|sp|B3QY14|PNP_CHLT3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|193088267|gb|ACF13542.1| Polyribonucleotide nucleotidyltransferase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 729

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 8/142 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR+ +++R IS+   +   A GS L   G+T  L T TL  K    + +T       
Sbjct: 332 RLDGRRLDEIRPISIELGLIPRAHGSALFTRGETQALVTLTLGTKKDAQLTDTLFDDADK 391

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +VS R+ G       +  RA++ VV         + +  D
Sbjct: 392 RFMLHYNFPPFSVGEVGRMGSVSRREIGHGN----LAERAIKKVVPAENAFPYTMRVVSD 447

Query: 118 VIQADGGTRTAAITGAWVALHD 139
           +++++G +  A++ G  +A  D
Sbjct: 448 ILESNGSSSMASVCGGTLAAMD 469


>gi|150388828|ref|YP_001318877.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus
           metalliredigens QYMF]
 gi|187470924|sp|A6TM00|PNP1_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 1; AltName:
           Full=Polynucleotide phosphorylase 1; Short=PNPase 1
 gi|149948690|gb|ABR47218.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus
           metalliredigens QYMF]
          Length = 702

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 23/162 (14%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74
           +V++ A+GSC++K+GDT +L TA      +E +  +  +  +       G +P   G  +
Sbjct: 20  KVAELAQGSCMIKYGDTFVLVTACASKEPKEGLDFFPLSCDYEEKLYAVGKIP---GGFI 76

Query: 75  KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
           KRE+   R   ++    R+I R +R +         Q+I     +  D     +A+ G+ 
Sbjct: 77  KRES---RPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATVLSVDQDCPPDISAMIGSS 133

Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +AL          SN         G  A++S GM+ G  IV+
Sbjct: 134 IAL--------SVSN-----IPFMGPTASVSVGMIDGEYIVN 162


>gi|114566439|ref|YP_753593.1| polynucleotide phosphorylase/polyadenylase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|122318489|sp|Q0AYI2|PNP_SYNWW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|114337374|gb|ABI68222.1| Polyribonucleotide nucleotidyltransferase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 703

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 95/227 (41%), Gaps = 32/227 (14%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRSTG 71
           +V++ A G+ L+++GDT +L TAT  ++        P+ +   +  +     G +P   G
Sbjct: 21  QVAQQANGAALMRYGDTVVLVTATAAKQPREGIDFFPLTVDYEEKQYAV---GKIP---G 74

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
             +KRE   GR   ++    R+I R +R +          ++     ++ D      AIT
Sbjct: 75  GFIKRE---GRATAQATLSARLIDRPIRPLFPKGFRNEIHVVATILSVEKDNAPDVTAIT 131

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
           GA VAL      + D            G VAA+  G++ G  I++    +    D+    
Sbjct: 132 GASVAL-----SISDIP--------FAGPVAAVIVGLVDGELIINPTVEQHQKSDLHLAV 178

Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             T    I+ V+G A      ++     +  A + I  ++  Q+++I
Sbjct: 179 AGTKEA-IMMVEGGANEV--PEETMRDAIFFAHEEIKKIVDFQENII 222


>gi|195351217|ref|XP_002042132.1| GM25757 [Drosophila sechellia]
 gi|194123956|gb|EDW45999.1| GM25757 [Drosophila sechellia]
          Length = 246

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 10/147 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ +++R I     V +  +GS  ++ G+T +L       +      N     I 
Sbjct: 13  LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAK---GNQTESVIN 69

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y     ST  R  R     R   +S E +  + +AL + +        QI I  +V+Q
Sbjct: 70  CQYSQATFSTAERKNRP----RGDRKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQ 125

Query: 121 ADGGTRTAAITGAWVALHD---CLQHM 144
            DG     A+  A +AL D   CL   
Sbjct: 126 DDGANYAVALNAATLALIDAGICLNEF 152


>gi|195952523|ref|YP_002120813.1| polynucleotide phosphorylase/polyadenylase [Hydrogenobaculum sp.
           Y04AAS1]
 gi|226702655|sp|B4U6R7|PNP_HYDS0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|195932135|gb|ACG56835.1| Polyribonucleotide nucleotidyltransferase [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 703

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 85/233 (36%), Gaps = 27/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKH 56
           R+ GR+E  +R I++     +   GS +   G T  L T TL  K     V         
Sbjct: 310 RIDGRKETDIRPITIEMHPLERPHGSAVFTRGQTQALATVTLAPKDEAQLVETIFEGETF 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG          R+ G     +R +   L    D   +    I +  
Sbjct: 370 KRFMLHYNFPPFSTGEARPWGPPRRREIGHGALAERALEPLLAKEEDFPYI----IRVVS 425

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           D+++++G +  A +    +AL D    M             K HVA I+ G++       
Sbjct: 426 DILESNGSSSMATVCAGSLALFDAGVPM-------------KKHVAGIAMGLIKDGDNFV 472

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
            + D+   ED   D+D     T  G +  VQ   +    S+D     LN AK+
Sbjct: 473 ILTDILGDEDHLGDMDFKVAGTRDG-VTSVQMDIKIKGLSKDIMIKALNQAKE 524


>gi|52549122|gb|AAU82971.1| tRNA nucleotidyltransferase [uncultured archaeon GZfos24D9]
          Length = 260

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 94/233 (40%), Gaps = 15/233 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR     R+I + R + K A+GS  V+ GDT +L    +E   P +      G +  
Sbjct: 23  RADGRGFLDFRDIIVERDLIKKADGSTRVQIGDTVVLVGVKVEPGAP-FPDTPNKGILMT 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              ++P ++      E  SG     S E+ R++ R +R    +DL  L    G +   + 
Sbjct: 82  NAELVPLAS-----PEFESGPPNEDSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMVF 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID   +  DG    AA  GA  +L +     E      + +  ++    A++   + G  
Sbjct: 137 IDIHTLDNDGNLVDAAALGAITSLLNVTIPYERYGLTGEDTLQIRDTPVAVTVVEIGGNL 196

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           +VD +  E+S        +    G I  +Q S      +++    M+ +  ++
Sbjct: 197 LVDPNVYEESAATSKLTVISNADGSISGLQKSGSTG-LTEEKIVKMIEIGIEK 248


>gi|257463538|ref|ZP_05627931.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium sp. D12]
          Length = 743

 Score = 43.5 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 61/250 (24%), Positives = 95/250 (38%), Gaps = 38/250 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR   ++R +     V     GS L   G+T  L TATL    +E++   +    + 
Sbjct: 360 RVDGRSTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKEDEQLVDNLEKEYYK 419

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G       +  RALR V+         I +  D
Sbjct: 420 KFYLHYNFPPYSVGETGRMGAPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSD 475

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  +AL                   +K HVA I+ G++        
Sbjct: 476 ITESNGSSSQASICGGSLAL-------------MSAGVPIKEHVAGIAMGLIKEGEEFTV 522

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHI-----VEVQGSAE---RATFSQDH-----FFAML 220
           + D+   ED   D+D     T SG       +++ G  E   R   SQ H        ++
Sbjct: 523 LTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALSQAHVARQQILEVM 582

Query: 221 NLAKDRIADL 230
           N A    ADL
Sbjct: 583 NAAISSPADL 592


>gi|118594124|ref|ZP_01551471.1| polynucleotide phosphorylase/polyadenylase [Methylophilales
           bacterium HTCC2181]
 gi|118439902|gb|EAV46529.1| polynucleotide phosphorylase/polyadenylase [Methylophilales
           bacterium HTCC2181]
          Length = 716

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 99/242 (40%), Gaps = 26/242 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  +  ATL    +E++   ++     
Sbjct: 324 RIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQAIVVATLGTGRDEQIIDALQGEFKD 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P +TG   +      R+ G  +  +R +  AL S  D        I +  +
Sbjct: 384 RFMLHYNFPPYATGETGRVGTPKRREIGHGKLAKRGLSAALPSKEDF----DYTIRLVSE 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  +A+ D    M D             HVA I+ G++        
Sbjct: 440 ITESNGSSSMASICGGTMAMMDAGVPMTD-------------HVAGIAMGLIKEDNRVAV 486

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     TD+G I  +Q   +    + +     L+ A++ I  ++K+
Sbjct: 487 LTDILGDEDHLGDMDFKVAGTDNG-ITALQMDIKITGITSEIMQVALSQAREGIDHILKI 545

Query: 234 QK 235
            K
Sbjct: 546 MK 547


>gi|24584046|ref|NP_609618.2| Ski6 [Drosophila melanogaster]
 gi|7298022|gb|AAF53263.1| Ski6 [Drosophila melanogaster]
 gi|201065945|gb|ACH92382.1| FI07225p [Drosophila melanogaster]
          Length = 246

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 12/148 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59
           +RL GR+ +++R I     V +  +GS  ++ G+T +L         P   + N     I
Sbjct: 13  LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVY----GPHQAKGNQTESVI 68

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y     ST  R  R     R   +S E +  + +AL + +        QI I  +V+
Sbjct: 69  NCQYSQATFSTAERKNRP----RGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVL 124

Query: 120 QADGGTRTAAITGAWVALHD---CLQHM 144
           Q DG     A+  A +AL D   CL   
Sbjct: 125 QDDGANYAVALNAATLALIDAGICLNEF 152


>gi|34496921|ref|NP_901136.1| polynucleotide phosphorylase/polyadenylase [Chromobacterium
           violaceum ATCC 12472]
 gi|81656248|sp|Q7NY10|PNP_CHRVO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|34102777|gb|AAQ59141.1| polyribonucleotide nucleotidyltransferase [Chromobacterium
           violaceum ATCC 12472]
          Length = 722

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R IS+   V     GS L   G+T  L  ATL  K    I +   G  T 
Sbjct: 324 RIDGRDTRTVRPISIRNNVLPRTHGSALFTRGETQALVVATLGTKQDEQIIDALAGEYTE 383

Query: 62  ----EYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P STG        +GR G  + +EI   R+  RAL +V+         + +
Sbjct: 384 RFMLHYNFPPYSTGE-------AGRMGPPKRREIGHGRLAKRALVAVLPPEDEFGYSMRV 436

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 437 VSEITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 479


>gi|307634882|gb|ADI84427.2| polyribonucleotide nucleotidyltransferase [Geobacter sulfurreducens
           KN400]
          Length = 740

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 84/205 (40%), Gaps = 27/205 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R IS+   +   A GS L   G+T  L  +TL     E+++      T+ 
Sbjct: 356 RIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVASTLGTSIDEQRIDSLYGETRK 415

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++   Y   P S G    R A   R+ G     +R + R +    D        I I  
Sbjct: 416 RFLL-HYNFPPFSVGETSFRLAPGRREIGHGMLAERALERVVPKHEDF----PYTIRIVS 470

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GYP 173
           D+++++G +  A + G  +A+ D                 +K  VA I+ G++    G  
Sbjct: 471 DILESNGSSSMATVCGGALAMMDA-------------GVPIKAPVAGIAMGLIKEGEGIA 517

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSG 197
           I+ D+   ED   D+D     T++G
Sbjct: 518 ILSDILGDEDHLGDMDFKVAGTEAG 542


>gi|154346012|ref|XP_001568943.1| exosome complex exonuclease RRP41 [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134066285|emb|CAM44076.1| putative exosome complex exonuclease rrp41 [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 246

 Score = 43.1 bits (100), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 20/183 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--W 58
           +RL GR+  + R + +        +GSC +  G + +  +     +  +  +  KH    
Sbjct: 13  LRLDGRRPLEARRMDIVFGTLSACDGSCDITVGQSKVCAS-IFGPRESLHKQEAKHDKVL 71

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +T E  +   +  +R   +    R+   S++I   + +  RSV+ LS   + QI I  +V
Sbjct: 72  VTCEVAVAAFAGESRRNPQ----RRSKLSEDIDAAVVQVARSVILLSQYPNSQIHIYIEV 127

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +Q DG  + A I  A +AL D    M D              V  IS G+L  + ++DL 
Sbjct: 128 LQQDGNEKVACINAACLALVDANVAMRDV-------------VCCISVGLLDEHMLIDLA 174

Query: 179 YGE 181
             E
Sbjct: 175 NDE 177


>gi|15644097|ref|NP_229146.1| polynucleotide phosphorylase/polyadenylase [Thermotoga maritima
           MSB8]
 gi|170289273|ref|YP_001739511.1| polyribonucleotide nucleotidyltransferase [Thermotoga sp. RQ2]
 gi|81553535|sp|Q9X166|PNP_THEMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226704827|sp|B1LBY0|PNP_THESQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|4981905|gb|AAD36416.1|AE001789_1 polynucleotide phosphorylase [Thermotoga maritima MSB8]
 gi|170176776|gb|ACB09828.1| Polyribonucleotide nucleotidyltransferase [Thermotoga sp. RQ2]
          Length = 708

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 34/230 (14%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRSTG 71
           +V+K + GS LV+FGDT +L TA + +K       VP+ +   +  +     G +P   G
Sbjct: 19  KVAKQSSGSALVRFGDTVVLATANISDKAVEGIDFVPLTVEFQERFYAA---GKIP---G 72

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
             +KRE   G+    +    R+I R +R +         Q+I+    +  +       I 
Sbjct: 73  GFIKRE---GKPSESAILSARLIDRPIRPLFPKKLRNEVQVIVTVLSVDPNVPPDVVGIF 129

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            A +AL+              +S++  +G VA I  G   G   + L   ED    +   
Sbjct: 130 AASLALN--------------VSKIPFEGIVAGIRVGYRDGQ-FIALPSEEDIEKGLMDI 174

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            V      +  V+G A+  T  ++     L  A   I +L+  Q++++S 
Sbjct: 175 TVAGTKDAVTMVEGEAKEVT--EEDMVKALRFAHSVIKELVDFQEEILSE 222


>gi|86747731|ref|YP_484227.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
           palustris HaA2]
 gi|123099194|sp|Q2J2J4|PNP_RHOP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|86570759|gb|ABD05316.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris HaA2]
          Length = 718

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 94/231 (40%), Gaps = 24/231 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I     V   A GS L   G+T  L   TL    +E+    +  T   
Sbjct: 316 RIDGRDSKTVRSIIAEAGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYVDSLAGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G        +GR GG + +EI   ++  RA+R V+         I +
Sbjct: 376 TFLLHYNFPPYSVGE-------TGRLGGTKRREIGHGKLAWRAIRPVLPPHHEFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++ +++G +  A++ GA +AL D    ++  +    +  +L+G   A+   +L     
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLSDILG---- 484

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                 ED   D+D     T+ G I  +Q   + A  +++     L  AKD
Sbjct: 485 -----DEDHLGDMDFKVAGTEQG-ITSLQMDIKIAGITEEIMKVALGQAKD 529


>gi|238881631|gb|EEQ45269.1| exosome complex exonuclease RRP41 [Candida albicans WO-1]
          Length = 240

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 27/188 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKY---AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG 57
           +R+ GR+ N++R      R++ +   ++GS  V+ G+T ++   T++  +   +R+ +H 
Sbjct: 9   LRIDGRRWNELRRFEC--RINTHPNSSDGSSYVEQGNTKVM--CTVQGPIEPALRSQQHS 64

Query: 58  W---ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
               I     +   ST  R KR     R   R  E++  + +     V ++      I+I
Sbjct: 65  ERANIEVNLNIASFSTFERKKR----SRNERRLVELKTTLEKTFEESVMINLYPRTNIVI 120

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
           +  V+  DGG   A I    +AL D    M D             +V+ +SCG+    P+
Sbjct: 121 NVQVLCQDGGMLAAVINSITLALIDAGISMYD-------------YVSGVSCGVYDQTPL 167

Query: 175 VDLDYGED 182
           +D++  E+
Sbjct: 168 LDVNNLEE 175


>gi|17946442|gb|AAL49254.1| RE67757p [Drosophila melanogaster]
          Length = 246

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 10/147 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ +++R I     V +  +GS  ++ G+T +L       +      N     I 
Sbjct: 13  LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAK---GNQTESVIN 69

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y     ST  R  R     R   +S E +  + +AL + +        QI I  +V+Q
Sbjct: 70  CQYSQATFSTAERKNRP----RGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQ 125

Query: 121 ADGGTRTAAITGAWVALHD---CLQHM 144
            DG     A+  A +AL D   CL   
Sbjct: 126 DDGANYAVALNAATLALIDAGICLNEF 152


>gi|88607778|ref|YP_505346.1| polynucleotide phosphorylase/polyadenylase [Anaplasma
           phagocytophilum HZ]
 gi|123494955|sp|Q2GJV5|PNP_ANAPZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|88598841|gb|ABD44311.1| polyribonucleotide nucleotidyltransferase [Anaplasma
           phagocytophilum HZ]
          Length = 838

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 25/174 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  +Q+R I +   +   A GS L   GDT  L    L    +E++       K  
Sbjct: 323 RIDGRAYDQIRNIEIEVDLISKAHGSALFTRGDTQALVITALGTPQDEQIVDGFDGDKRE 382

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIID 115
                Y   P + G     EA + R  GR +EI   ++  RA+  V+   A     I + 
Sbjct: 383 RFLLHYNFPPYAVG-----EASALRPPGR-REIGHGKLAWRAIHPVLPSKADFPYTIRVV 436

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            ++ ++DG +  A + GA +AL D                 LK  VA I+ G++
Sbjct: 437 SEITESDGSSSMATVCGASLALMDT-------------GVPLKSSVAGIAMGLI 477


>gi|15678709|ref|NP_275825.1| exosome complex RNA-binding protein Rrp42 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|29336572|sp|O26778|ECX2_METTH RecName: Full=Probable exosome complex exonuclease 2
 gi|295321489|pdb|2WNR|A Chain A, The Structure Of Methanothermobacter Thermautotrophicus
           Exosome Core Assembly
 gi|295321491|pdb|2WNR|C Chain C, The Structure Of Methanothermobacter Thermautotrophicus
           Exosome Core Assembly
 gi|295321493|pdb|2WNR|E Chain E, The Structure Of Methanothermobacter Thermautotrophicus
           Exosome Core Assembly
 gi|2621767|gb|AAB85187.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 271

 Score = 43.1 bits (100), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 108/247 (43%), Gaps = 24/247 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  ++ R+IS+   V   AEGS  VK G+T ++     +   P +    + G I  
Sbjct: 25  RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEP-FPDTPEMGVILT 83

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSR--QII 113
              +LP ++          G    RS E+ R++ R +R   ++DL  L    GS+   + 
Sbjct: 84  NSELLPMASPT-----FEPGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLF 138

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC------LQHMEDCSNKFQLSQVLKGHVAAISCG 167
           +D  +I  DG    AA+     AL D       ++  E   N+ ++ Q L  +  A+ C 
Sbjct: 139 LDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDGEVVINREKM-QPLPVNRKALMCT 197

Query: 168 ML-CGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
               G  IV D    E+  +    +  +T+ G I  +Q   E    ++D     +++A +
Sbjct: 198 FAKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGE-GPLTRDDVLKAVSIAVE 256

Query: 226 RIADLIK 232
           ++  LI+
Sbjct: 257 KVPQLIE 263


>gi|302389789|ref|YP_003825610.1| polyribonucleotide nucleotidyltransferase [Thermosediminibacter
           oceani DSM 16646]
 gi|302200417|gb|ADL07987.1| polyribonucleotide nucleotidyltransferase [Thermosediminibacter
           oceani DSM 16646]
          Length = 702

 Score = 43.1 bits (100), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 104/235 (44%), Gaps = 40/235 (17%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRS 69
           T ++++ A G+ L ++GDT +L TAT  ++       +P+ +   +  +     G +P  
Sbjct: 17  TGKLAQQANGAVLARYGDTVVLVTATASKEPREGVDFLPLTVDYEERLYAV---GKIP-- 71

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT-- 127
            G  +KRE   G+   ++    R+I R LR +         QII    ++  D G     
Sbjct: 72  -GGFIKRE---GKPSEKAILSARVIDRPLRPLFPKGFRNDIQII--ATILSVDQGNTPDV 125

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD--LDYGEDSTI 185
            AI GA +AL  C+  +             +G V A+S G++ G  I++  ++  E S +
Sbjct: 126 VAINGASIAL--CISDIP-----------FEGPVGAVSVGLVDGNFIINPTVEQYEKSRL 172

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            +    V      I+ V+  A+  T  ++     +    + I  ++K Q+++I+ 
Sbjct: 173 RL---VVAGTKDAILMVEAGADEVT--EEEMINAILFGHEEIKKIVKFQEEIIAK 222



 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+  ++R IS    +     GS L   G T +LT ATL    + ++   +   + 
Sbjct: 310 IRPDGRKSTEIRPISCEVGILPRTHGSGLFTRGQTQVLTVATLGALGDVQILDGLELEES 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG          R+ G       +  RAL  ++         I +  
Sbjct: 370 KRFMHHYNFPPYSTGETRMLRGPGRREIGHGA----LAERALEPMIPPEETFPYTIRLVS 425

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           +V+ ++G T  A++ G+ +AL D                 +K  VA I+ G++
Sbjct: 426 EVLSSNGSTSMASVCGSTLALMDA-------------GVPIKAPVAGIAMGLI 465


>gi|226494746|ref|NP_001148711.1| exosome complex exonuclease RRP43 [Zea mays]
 gi|195621578|gb|ACG32619.1| exosome complex exonuclease RRP43 [Zea mays]
          Length = 306

 Score = 43.1 bits (100), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 100/262 (38%), Gaps = 51/262 (19%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+  R+  + R  ++       A GS LV+ GDT +L +  LE   P        G ++
Sbjct: 39  VRIDARRLREARTTTVALGAVSSAHGSALVRVGDTAMLASVKLEVMSPSA-EYPDEGSVS 97

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV---------DLSALGSRQ 111
            E+ M P  +            + GRS E+  +I +AL  V+         DL  +  + 
Sbjct: 98  VEFHMPPICS---------PLVRPGRSAEVAPVISKALEDVLMSSRMLNLKDLCLITGKA 148

Query: 112 ---IIIDCDVIQADGGTRTAAITGAWVALHDCLQHME------------------DCSNK 150
                +D   + ADG    AA+  A  A      H+E                  D  NK
Sbjct: 149 SWLAYLDIYCLNADGSLFDAALISAVSAF----THLEIPLVSVGDDGKLFTVGGNDGKNK 204

Query: 151 FQLSQVLKGHVA------AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
           F+L    K  +       +++C +  G  + D    E+S I+     V+  S  +V +Q 
Sbjct: 205 FELVNREKRKLTLGDIPLSLTCALHKGCILTDPTSEEESIIETYVTVVVDSSDRLVSLQK 264

Query: 205 SAERATFSQDHFFAMLNLAKDR 226
                T S       ++LAK+R
Sbjct: 265 VGGTVT-SMATIKECISLAKER 285


>gi|171912768|ref|ZP_02928238.1| polynucleotide phosphorylase/polyadenylase [Verrucomicrobium
           spinosum DSM 4136]
          Length = 707

 Score = 43.1 bits (100), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 97/227 (42%), Gaps = 30/227 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPRSTGN 72
           T +++K A+G+  V+ GDT ++ TA    KV      +  + ++    A  G  P   G 
Sbjct: 19  TGKLAKLADGAVTVRQGDTIVIVTAVSATKVKEGQDFFPLSVEYKEKAAAAGKFP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--AAI 130
             KRE   GR   +     RM  R LR +         QI+    ++ ADG       +I
Sbjct: 76  YFKRE---GRPTEKEILTCRMTDRPLRPLFPKGYYYDTQIV--ALLLSADGENDADIISI 130

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  AL  C+  +              G V A+  G + G  +++  + + +  D+D  
Sbjct: 131 NGASAAL--CVSDIP-----------FAGPVGAVRVGRVNGQFVLNPTHSQRAKSDLDLV 177

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +V   S  ++ ++G+A      +  F   L  A++ +  L+ +Q+++
Sbjct: 178 YVGNKS-EVIMIEGAANE--LPEAEFIKALAFAQEHVQVLVAVQEEL 221


>gi|289548545|ref|YP_003473533.1| polyribonucleotide nucleotidyltransferase [Thermocrinis albus DSM
           14484]
 gi|289182162|gb|ADC89406.1| polyribonucleotide nucleotidyltransferase [Thermocrinis albus DSM
           14484]
          Length = 704

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 100/230 (43%), Gaps = 44/230 (19%)

Query: 21  SKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWI--RNTKHGWITAEYGMLPRSTG 71
           +K A+G+ +V+ GDT +L TA + E+       VP+ +  R     W     G +P   G
Sbjct: 22  AKQADGAVVVRQGDTAVLVTAVMSEEPQTNVDFVPLTVDYREQSSAW-----GKIP---G 73

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG--TRTAA 129
             +KRE   G+   R   + R+I R +R +       S  +++    + AD        A
Sbjct: 74  GFIKRE---GKPTDREILVSRVIDRPIRPLFPEGF--SHDVVVTALTLSADDKYDPDVLA 128

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ITGA  ALH              +S++  +G +A +    + G  + +  Y E    D++
Sbjct: 129 ITGASAALH--------------ISRIPFEGPIAGVRICRVEGRLVANPTYEERQKADLE 174

Query: 189 ANFVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              VM  S   IV V+G A+     ++     L    + I DL++ Q+++
Sbjct: 175 --IVMAGSKDAIVMVEGGAKEV--DEEVLTEALYFGLEVIQDLLRAQEEL 220


>gi|58584280|ref|YP_197853.1| polynucleotide phosphorylase/polyadenylase [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|75498164|sp|Q5GTR3|PNP_WOLTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|58418596|gb|AAW70611.1| Polyribonucleotide nucleotidyltransferase, pnp [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 755

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 12  REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYG 64
           R +SL T ++++ A+GS +V +GDT +L T   ++K      +P+ ++     +I   Y 
Sbjct: 14  RTLSLETGKIARQADGSVVVNYGDTSILVTVVRKKKEEIVDFLPLNVQ-----FIAKSYA 68

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD-- 122
           M  R  G   KRE   G+   R   I R+I R++R +  L      +I I C+++  D  
Sbjct: 69  M-GRIPGGFFKRE---GKPSDRETLISRVIDRSIRPLF-LEGFHD-EISIVCNLLTYDTV 122

Query: 123 GGTRTAAITGAWVAL 137
                 A+ GA  AL
Sbjct: 123 NPPEVPALIGAVAAL 137


>gi|282882000|ref|ZP_06290641.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus lacrimalis
           315-B]
 gi|281298030|gb|EFA90485.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus lacrimalis
           315-B]
          Length = 722

 Score = 42.7 bits (99), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 23/174 (13%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74
           +V++ A G CLV++GDT +L TAT      E +  +  +  +       G +P   G  +
Sbjct: 20  KVAEQANGECLVQYGDTVVLVTATSSKEPREGIDFFPLSVDYEEKMYAVGKIP---GGFI 76

Query: 75  KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
           KRE   GR   ++    R+I R LR +         QI+     +  D      A+ G+ 
Sbjct: 77  KRE---GRPSEKATLTARLIDRPLRPLFPEGYRNDVQIVATVLSVDQDHIPDIPAMIGSS 133

Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           +AL  CL  +              G   ++  G++ G  +++ +  +    D++
Sbjct: 134 IAL--CLSDIP-----------FDGPTGSVQVGLVDGEYVINPNQEQREKTDIN 174


>gi|57095694|ref|XP_539207.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal
           RNA processing protein 41) (Exosome component 4) (p12A)
           isoform 1 [Canis familiaris]
          Length = 245

 Score = 42.7 bits (99), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 22/162 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L         P  IR ++      
Sbjct: 13  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEIRGSRARALPD 68

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QII 113
              +  +Y     STG R +R       G R S E+   + +   + + L+ L  R QI 
Sbjct: 69  RALVNCQYSSATFSTGERKRRP-----HGDRKSCEMGLHLRQTFEAAI-LTQLHPRSQID 122

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMED----CSNKF 151
           I   V+QADGGT  A +  A +A+ D    M D    CS  F
Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGF 164


>gi|300813727|ref|ZP_07094047.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512184|gb|EFK39364.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 722

 Score = 42.7 bits (99), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 23/174 (13%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74
           +V++ A G CLV++GDT +L TAT      E +  +  +  +       G +P   G  +
Sbjct: 20  KVAEQANGECLVQYGDTVVLVTATSSKEPREGIDFFPLSVDYEEKMYAVGKIP---GGFI 76

Query: 75  KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
           KRE   GR   ++    R+I R LR +         QI+     +  D      A+ G+ 
Sbjct: 77  KRE---GRPSEKATLTARLIDRPLRPLFPEGYRNDVQIVATVLSVDQDHIPDIPAMIGSS 133

Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           +AL  CL  +              G   ++  G++ G  +++ +  +    D++
Sbjct: 134 IAL--CLSDIP-----------FDGPTGSVQVGLVDGEYVINPNQEQREKTDIN 174


>gi|242065778|ref|XP_002454178.1| hypothetical protein SORBIDRAFT_04g026110 [Sorghum bicolor]
 gi|241934009|gb|EES07154.1| hypothetical protein SORBIDRAFT_04g026110 [Sorghum bicolor]
          Length = 983

 Score = 42.7 bits (99), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 21/174 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GRQ +++R +           GS L   GDT +L T TL         ++  G  T
Sbjct: 379 LRVDGRQLDEVRPLYCESNTYPVLHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPT 438

Query: 61  A----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S     KR  ++ R+ G       +  +AL +V+   +     + ++ 
Sbjct: 439 KRFMLHYSFPPFSINEVAKRGGLNRREVGHGT----LAEKALLAVLPPESDFPYAVRVNS 494

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           +V+ +DG T  A++ G  +AL D                 ++ HVA +S G++ 
Sbjct: 495 EVMASDGSTSMASVCGGSMALMDA-------------GIPVREHVAGVSVGLVS 535


>gi|194220716|ref|XP_001496138.2| PREDICTED: similar to Polyribonucleotide nucleotidyltransferase 1,
           mitochondrial precursor (PNPase 1) (Polynucleotide
           phosphorylase-like protein) (PNPase old-35) (3-5 RNA
           exonuclease OLD35) [Equus caballus]
          Length = 784

 Score = 42.7 bits (99), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 38/200 (19%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++++A+GS +V+ GDT ++ TA  + K      +P+ +   +     A  G +P    N
Sbjct: 62  KLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFLPLVVDYRQKA---AAAGRIPT---N 115

Query: 73  RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128
            ++RE      G   +EI   R+I R++R +         Q++  C+++  DG       
Sbjct: 116 YLRREI-----GSSDKEILTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNEPDVL 168

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AI GA VAL               LS +   G V A+  GM+ G  +V+    E S+  +
Sbjct: 169 AINGASVAL--------------SLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTL 214

Query: 188 DANFVMTDSGHIVEVQGSAE 207
           +          IV ++ SAE
Sbjct: 215 NLVVAGAPKSQIVMLEASAE 234


>gi|47847669|dbj|BAD21450.1| putative polyribonucleotide nucleotidyltransferase [Oryza sativa
           Japonica Group]
          Length = 982

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 21/173 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GRQ +++R +           GS L   GDT +L T TL         ++  G  T
Sbjct: 378 LRVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPT 437

Query: 61  A----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S     KR  ++ R+ G       +  +AL +V+         + ++ 
Sbjct: 438 KRFMLHYSFPPFSINEVAKRGGLNRREVGHGT----LAEKALLAVLPPEGEFPYTVRVNS 493

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           +V+ +DG T  A++ G  +AL D                 ++ HVA +S G++
Sbjct: 494 EVMASDGSTSMASVCGGSMALMDA-------------GIPVREHVAGVSVGLV 533


>gi|300311084|ref|YP_003775176.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum
           seropedicae SmR1]
 gi|300073869|gb|ADJ63268.1| polyribonucleotide nucleotidyltransferase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 712

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 29/176 (16%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R IS+   V     GS L   G+T  L  ATL     E+K+   +     
Sbjct: 320 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIATLGTARDEQKIDGLLGEYSD 379

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQII 113
            ++   Y M P +TG        +GR G  + +EI   R+  RAL + +  +   S  + 
Sbjct: 380 RFML-HYNMPPFATGE-------TGRVGTPKRREIGHGRLAKRALIAALPAADEFSYSVR 431

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           +  ++ +++G +  A++ G  +AL D    M             K HVA I+ G++
Sbjct: 432 LVSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLI 474


>gi|261749590|ref|YP_003257276.1| polynucleotide phosphorylase/polyadenylase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497683|gb|ACX84133.1| polynucleotide phosphorylase/polyadenylase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 710

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 12/145 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
           +RL GR+  Q+R I           GS L   G+T  LTT TL       K+   I   +
Sbjct: 323 IRLDGRKSQQIRPIWSIVDYLPEVHGSALFSRGETQSLTTVTLGSSLDANKIDNVIMENQ 382

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +    Y   P STG       VS R+ G     Q    RAL++V+  +   + +++  
Sbjct: 383 EKF-YLHYNFPPFSTGEIRPIRGVSRREIGHGNLAQ----RALKNVIPDNNPYTIRVV-- 435

Query: 116 CDVIQADGGTRTAAITGAWVALHDC 140
            D+++++G +  A +  A +AL D 
Sbjct: 436 SDILESNGSSSMATVCAASLALMDA 460


>gi|255034850|ref|YP_003085471.1| polynucleotide phosphorylase/polyadenylase [Dyadobacter fermentans
           DSM 18053]
 gi|254947606|gb|ACT92306.1| Polyribonucleotide nucleotidyltransferase [Dyadobacter fermentans
           DSM 18053]
          Length = 713

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 63/149 (42%), Gaps = 20/149 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGW- 58
           RL GR  +Q+R I+        A GS L   G+T  LTT TL  K    I +T  K+G+ 
Sbjct: 321 RLDGRALDQVRPIASEVDFLPNAHGSALFTRGETQSLTTVTLGTKQDEQIVDTPLKYGYS 380

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111
                Y     STG     E    R  GR     R +G      RAL+ V+         
Sbjct: 381 KFMLHYNFPGFSTG-----EVKPNRGPGR-----REVGHGNLALRALKKVLPAEGDNPYT 430

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDC 140
           I I  D+++++G +  A +    +AL D 
Sbjct: 431 IRIVSDILESNGSSSMATVCAGSLALMDS 459


>gi|91974709|ref|YP_567368.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
           palustris BisB5]
 gi|123749482|sp|Q13EM2|PNP_RHOPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|91681165|gb|ABE37467.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris BisB5]
          Length = 722

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 94/231 (40%), Gaps = 24/231 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I     V   A GS L   G+T  L   TL    +E+    +  T   
Sbjct: 316 RIDGRDSKTVRSIIAEAGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYVDSLAGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G        +GR GG + +EI   ++  RA+R V+         I +
Sbjct: 376 TFLLHYNFPPYSVGE-------TGRLGGTKRREIGHGKLAWRAIRPVLPPHHEFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++ +++G +  A++ GA +AL D    ++  +    +  +L+G   A+   +L     
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLSDILG---- 484

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                 ED   D+D     T+ G +  +Q   + A  +++     L  AKD
Sbjct: 485 -----DEDHLGDMDFKVAGTEQG-VTSLQMDIKIAGITEEIMKVALGQAKD 529


>gi|145220228|ref|YP_001130937.1| polynucleotide phosphorylase/polyadenylase [Prosthecochloris
           vibrioformis DSM 265]
 gi|189037312|sp|A4SG26|PNP_PROVI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145206392|gb|ABP37435.1| Polyribonucleotide nucleotidyltransferase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 732

 Score = 42.7 bits (99), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 60/142 (42%), Gaps = 8/142 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           RL GR  +Q+R IS+   V   A GS L   G+T  L   TL  K        + N+   
Sbjct: 332 RLDGRTLDQVRPISIDLGVIPRAHGSALFTRGETQALVAVTLGTKKDAQSVDTLTNSADK 391

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  V R   +GR   R      +  RA+R V          I I  +
Sbjct: 392 RFMLHYNFPPFSVGE-VGRLGTTGR---REIGHGNLAERAIRMVAPTEQEFPYTIRIVSE 447

Query: 118 VIQADGGTRTAAITGAWVALHD 139
           +++++G +  A++ G  +AL D
Sbjct: 448 ILESNGSSSMASVCGGTLALMD 469



 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 94/236 (39%), Gaps = 32/236 (13%)

Query: 10  QMREISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY----- 63
           Q + IS+ T R++K A+G+ +V+ GDT ++ T    +K P    N     +  EY     
Sbjct: 11  QGKTISIETGRMAKQADGATVVRMGDTMVIATVVSSKKTPSP--NQDFFPLQVEYREKYY 68

Query: 64  --GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
             G  P   G   KREA   R   +     R+I RALR +         Q+II  +VI +
Sbjct: 69  AAGKFP---GGFFKREA---RPSEKEILSARLIDRALRPLFPTGYYYETQVII--NVISS 120

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D     A + G   A    +  + D   +  +S+V  G V     G     P +D   G 
Sbjct: 121 D-QQNDADVLGGLAASAAIM--VSDIPFENAMSEVRVGRV----NGQFIINPTIDELEGS 173

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           D  I +        +G I  ++G  E    S+      +    + I  L  LQ  V
Sbjct: 174 DIDISIGGT-----AGTICMLEG--EMKEISEAEMLEAIRFGHEAIKKLCALQDSV 222


>gi|217077873|ref|YP_002335591.1| polynucleotide phosphorylase/polyadenylase [Thermosipho africanus
           TCF52B]
 gi|257096711|sp|B7IE23|PNP_THEAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|217037728|gb|ACJ76250.1| polyribonucleotide nucleotidyltransferase [Thermosipho africanus
           TCF52B]
          Length = 697

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 101/232 (43%), Gaps = 38/232 (16%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTG 71
           +V+K + GS  V+FGD+ +L TA + ++    I       +T EY       G +P   G
Sbjct: 21  KVAKQSAGSVWVQFGDSVVLATANISDRT---IEGVDFVPLTVEYQEKFYAAGKIP---G 74

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
             +KRE   G+    +    R+I R +R +         Q+I+   V+  DG T    +T
Sbjct: 75  GFIKRE---GKPSESAILSARLIDRPIRPLFPKYLRNDVQLIV--TVLSVDGNT-PPDVT 128

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIV--DLDYGEDSTIDVD 188
           G   A           S    +S++  +G VA +  G + G  +V    +  E S +D+ 
Sbjct: 129 GIIAA-----------SLALNISKIPFEGIVAGVRLGYVDGKFVVFPTEEQLEKSRLDI- 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
              V      I  V+G A+  T  ++     L +A D I  +I+ +++++S 
Sbjct: 177 --VVAGSKDAITMVEGEAKEVT--EEEMVNALMVAHDAIKQIIEFEEEILSQ 224


>gi|239618017|ref|YP_002941339.1| Polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF
           19.5.1]
 gi|197321135|gb|ACH68639.1| polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF
           19.5.1]
 gi|239506848|gb|ACR80335.1| Polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF
           19.5.1]
          Length = 737

 Score = 42.7 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 101/248 (40%), Gaps = 28/248 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGW 58
           +R+ GR+  ++R I+    +     GS L   G+T  L T TL   +   I +T  + G 
Sbjct: 323 LRMDGRKTTEIRPITCELDILPRTHGSALFTRGETQSLATVTLGAPIDEQIIDTLLEEGS 382

Query: 59  IT--AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            T    Y   P STG  VKR    GR   R      +  RAL++++         I +  
Sbjct: 383 KTFMLHYNFPPFSTG-EVKRMRGPGR---REIGHGHLAERALKNMIPPEEEFPYTIRVVS 438

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
           ++++++G +  A +    +AL                   +K HVA ++ G++   P   
Sbjct: 439 EILESNGSSSMATVCSGSLAL-------------MAAGVPIKRHVAGVAMGLI-QEPDET 484

Query: 174 --IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   + A  S++     L  AK+    ++
Sbjct: 485 VILTDILGNEDHYGDMDFKVAGTRDG-ITAFQMDVKVAGVSEEIMLKALYQAKEARMKIL 543

Query: 232 KLQKDVIS 239
            L  + IS
Sbjct: 544 DLMYETIS 551



 Score = 35.0 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 94/231 (40%), Gaps = 38/231 (16%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRSTG 71
           +++K + G+C V+F D+ +L T    E+       VP+ +   +  +     G +P   G
Sbjct: 22  KMAKQSHGACFVRFADSAILATVNASEEPLPQAGFVPLTVEFQEKFYAA---GKIP---G 75

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
             VKRE   G+    +    R+I R +R +         Q+I+       D    T  I 
Sbjct: 76  GFVKRE---GKPSENAILSARLIDRPIRPLFPKGMSNEVQVIVTVLSADPDNPPDTIGIF 132

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIV--DLDYGEDSTIDVD 188
            + +AL+              +S +   G VA +  G + G  I     +  E S +D+ 
Sbjct: 133 ASSLALN--------------ISPIPFDGMVAGVRVGYVDGEYIFFPTSEELEKSELDI- 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
              V      +  V+G A+    S++     L  A + I  L++ Q++++S
Sbjct: 178 --VVAGTKEAVTMVEGEAKEV--SEEVMLKALMKAHEAIKQLVEFQEEIVS 224


>gi|313115448|ref|ZP_07800916.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622242|gb|EFQ05729.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 716

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 29/176 (16%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  N++R ++    +     GS +   G T +LTT TL    + ++   + + +  
Sbjct: 322 RVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTK 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQR--MIGRALRSVVDLSALGSRQIIID 115
                Y   P S G     EA + R  GR +EI    +  RAL  V  L +L      I 
Sbjct: 382 RYIHHYNFPPYSVG-----EARAPRSPGR-REIGHGALAERALVPV--LPSLEEFPYTIR 433

Query: 116 C--DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           C  +V+ ++G T  A+I G+ +AL D                 +K  VA ISCG++
Sbjct: 434 CVSEVLSSNGSTSQASICGSTLALMDA-------------GVPIKAPVAGISCGLI 476


>gi|301773434|ref|XP_002922118.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 2
           [Ailuropoda melanoleuca]
          Length = 240

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 99/245 (40%), Gaps = 30/245 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK-HGWIT 60
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L         P   +  +    + 
Sbjct: 13  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY----GPHEAKGRRDRALVN 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QIIIDCDV 118
            +Y     STG R +R       G R S E+   + +   + + L+ L  R QI I   V
Sbjct: 69  CQYSSATFSTGERKRRP-----HGDRKSCEMGLQLRQTFEAAI-LTQLHPRSQIDIYVQV 122

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QADGGT  A +  A +A+ D    M D              V A S G +    + DL 
Sbjct: 123 LQADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDSTALADLS 169

Query: 179 YGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           + E++      A  ++  SG I  ++  A      +DH   +L  A     D+  L   V
Sbjct: 170 HVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAARDVHTLLDHV 226

Query: 238 ISNEV 242
           +   V
Sbjct: 227 VRQHV 231


>gi|295102740|emb|CBL00285.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
           prausnitzii L2-6]
          Length = 714

 Score = 42.7 bits (99), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 29/176 (16%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  N++R ++    +     GS +   G T +LTT TL    + ++   + + +  
Sbjct: 322 RVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTK 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQR--MIGRALRSVVDLSALGSRQIIID 115
                Y   P S G     EA + R  GR +EI    +  RAL  V  L +L      I 
Sbjct: 382 RYIHHYNFPPYSVG-----EARAPRSPGR-REIGHGALAERALLPV--LPSLEEFPYTIR 433

Query: 116 C--DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           C  +V+ ++G T  A+I G+ +AL D                 +K  VA ISCG++
Sbjct: 434 CVSEVLSSNGSTSQASICGSTLALMDA-------------GVPIKAPVAGISCGLI 476


>gi|226493578|ref|NP_001146202.1| hypothetical protein LOC100279772 [Zea mays]
 gi|219886165|gb|ACL53457.1| unknown [Zea mays]
          Length = 733

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 21/173 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GRQ +++R +           GS L   GDT +L T TL         ++  G  T
Sbjct: 129 LRVDGRQLDEVRPLYCESNTYPLLHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPT 188

Query: 61  A----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S     KR  ++ R+ G       +  +AL +V+   +     + ++ 
Sbjct: 189 KRFMLHYSFPPFSIDEVAKRGGLNRREVGHGT----LAEKALLAVLPPESDFPYTVRVNA 244

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           +V+ +DG T  A++ G  +AL D                 ++ HVA +S G++
Sbjct: 245 EVMASDGSTSMASVCGGSMALMDA-------------GIPVREHVAGVSVGLV 284


>gi|109103041|ref|XP_001112421.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Macaca mulatta]
          Length = 754

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 38/200 (19%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++++A+GS +V+ GDT ++ TA  + K      +P+ +   +     A  G +P    N
Sbjct: 27  KLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AAAGRIPT---N 80

Query: 73  RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128
            ++RE      G   +EI   R+I R++R +         Q++  C+++  DG       
Sbjct: 81  YLRREI-----GTSDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEPDVL 133

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AI GA VAL               LS +   G V A+  GM+ G  +V+    E S+  +
Sbjct: 134 AINGASVAL--------------SLSDIPWNGPVGAVRIGMIDGEYVVNPTRKEMSSSTL 179

Query: 188 DANFVMTDSGHIVEVQGSAE 207
           +          IV ++ SAE
Sbjct: 180 NLVVAGAPKSQIVMLEASAE 199


>gi|24943088|gb|AAK13047.1| 3'-5' RNA exonuclease [Homo sapiens]
          Length = 783

 Score = 42.7 bits (99), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 39/210 (18%)

Query: 9   NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAE 62
           N+  EIS + +++++A+GS +V+ GDT ++ TA  + K      +P+ +   +     A 
Sbjct: 53  NRKLEIS-SGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AA 108

Query: 63  YGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            G +P    N ++RE      G   +EI   R+I R++R +         Q++  C+++ 
Sbjct: 109 AGRIPT---NYLRREV-----GTSDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLA 158

Query: 121 ADGGTRT--AAITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDL 177
            DG       AI GA VAL               LS +   G V A+  G++ G  +V+ 
Sbjct: 159 VDGVNEPDVLAINGASVAL--------------SLSDIPWNGPVGAVRIGIIDGEYVVNP 204

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207
              E S+  ++          IV ++ SAE
Sbjct: 205 TRKEMSSSTLNLVVAGAPKSQIVMLEASAE 234


>gi|20372922|emb|CAD30289.1| polynucleotide phosphorylase-like protein [Homo sapiens]
 gi|31657166|gb|AAH53660.1| Polyribonucleotide nucleotidyltransferase 1 [Homo sapiens]
          Length = 783

 Score = 42.7 bits (99), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 39/210 (18%)

Query: 9   NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAE 62
           N+  EIS + +++++A+GS +V+ GDT ++ TA  + K      +P+ +   +     A 
Sbjct: 53  NRKLEIS-SGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AA 108

Query: 63  YGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            G +P    N ++RE      G   +EI   R+I R++R +         Q++  C+++ 
Sbjct: 109 AGRIPT---NYLRREV-----GTSDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLA 158

Query: 121 ADGGTRT--AAITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDL 177
            DG       AI GA VAL               LS +   G V A+  G++ G  +V+ 
Sbjct: 159 VDGVNEPDVLAINGASVAL--------------SLSDIPWNGPVGAVRIGIIDGEYVVNP 204

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207
              E S+  ++          IV ++ SAE
Sbjct: 205 TRKEMSSSTLNLVVAGAPKSQIVMLEASAE 234


>gi|322386167|ref|ZP_08059800.1| polyribonucleotide nucleotidyltransferase [Streptococcus cristatus
           ATCC 51100]
 gi|321269747|gb|EFX52674.1| polyribonucleotide nucleotidyltransferase [Streptococcus cristatus
           ATCC 51100]
          Length = 732

 Score = 42.7 bits (99), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 99/230 (43%), Gaps = 33/230 (14%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70
           T +V+K A GS +V++G++ +LT AT+ +K+      P+ +   +  +   +Y       
Sbjct: 19  TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G  +KRE   GR    +    R+I R +R +         Q+I        D   + AA+
Sbjct: 73  GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            G+ +AL      + D            G +A +  G + G  I++    +     ++  
Sbjct: 130 FGSSLAL-----SISDIP--------FNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELT 176

Query: 191 FVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
              T D+ ++VE  G+ E    S+D     L    + + +LI  Q+++++
Sbjct: 177 VAGTKDAINMVE-SGAKE---LSEDIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|71908066|ref|YP_285653.1| polynucleotide phosphorylase/polyadenylase [Dechloromonas aromatica
           RCB]
 gi|123760455|sp|Q47D98|PNP_DECAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|71847687|gb|AAZ47183.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Dechloromonas
           aromatica RCB]
          Length = 715

 Score = 42.7 bits (99), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 27/175 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPITMRSGVLPRTHGSALFTRGETQALAVATLGTNRDEQIIDALAGEYRD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG         GR G  + +EI   R+  RAL +V+      S  + +
Sbjct: 376 RFMLHYNMPPYATGE-------CGRVGTPKRREIGHGRLAKRALLAVLPKPEDFSYSMRL 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ G  +AL D                 LK HVA I+ G++
Sbjct: 429 VSEITESNGSSSMASVCGGCLALLDA-------------GVPLKAHVAGIAMGLI 470


>gi|308513305|ref|NP_952644.3| polynucleotide phosphorylase/polyadenylase [Geobacter
           sulfurreducens PCA]
 gi|81702393|sp|Q74CS9|PNP_GEOSL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|39983574|gb|AAR34967.1| polyribonucleotide nucleotidyltransferase [Geobacter sulfurreducens
           PCA]
          Length = 697

 Score = 42.7 bits (99), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 84/205 (40%), Gaps = 27/205 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R IS+   +   A GS L   G+T  L  +TL     E+++      T+ 
Sbjct: 313 RIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVASTLGTSIDEQRIDSLYGETRK 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++   Y   P S G    R A   R+ G     +R + R +    D        I I  
Sbjct: 373 RFLL-HYNFPPFSVGETSFRLAPGRREIGHGMLAERALERVVPKHEDF----PYTIRIVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GYP 173
           D+++++G +  A + G  +A+ D                 +K  VA I+ G++    G  
Sbjct: 428 DILESNGSSSMATVCGGALAMMDA-------------GVPIKAPVAGIAMGLIKEGEGIA 474

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSG 197
           I+ D+   ED   D+D     T++G
Sbjct: 475 ILSDILGDEDHLGDMDFKVAGTEAG 499


>gi|229012990|ref|ZP_04170155.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM
           2048]
 gi|228748244|gb|EEL98104.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM
           2048]
          Length = 717

 Score = 42.7 bits (99), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT   K P   +N     
Sbjct: 3   QEKQVFSIDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATA-SKEP---KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|150390429|ref|YP_001320478.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus
           metalliredigens QYMF]
 gi|187470927|sp|A6TRK1|PNP4_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 4; AltName:
           Full=Polynucleotide phosphorylase 4; Short=PNPase 4
 gi|149950291|gb|ABR48819.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus
           metalliredigens QYMF]
          Length = 704

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 95/232 (40%), Gaps = 29/232 (12%)

Query: 15  SLTRRVSKYAE---GSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
           +L   + KYAE   GSC+V++GDT +L  AT      E +  +  +  +       G +P
Sbjct: 13  TLHVEIGKYAEQASGSCMVRYGDTTVLVNATASKSPREGIDFFPLSVDYEEKLYAVGKIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KREA   R   ++    R+I R +R +         Q+I     +  D     
Sbjct: 73  ---GGFIKREA---RPSEKAVLTSRLIDRPIRPLFPKGYRNEVQVIATVMSVDKDYAPDI 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ G+ +AL      + D            G   +++ G++ G  +++    + +  D+
Sbjct: 127 VAMIGSSIAL-----SISDIP--------FGGPTGSVNVGLVNGEFVLNPTSDQRAISDI 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   V      I+ ++  A   T  +D     L  A + I  ++   +++++
Sbjct: 174 DL-VVSGTKDAIMMIESGANEVT--EDQMLDALMFAHEEIKTIVAFIEEIVA 222


>gi|189501482|ref|YP_001957199.1| polynucleotide phosphorylase/polyadenylase [Candidatus Amoebophilus
           asiaticus 5a2]
 gi|226702593|sp|B3EU51|PNP_AMOA5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189496923|gb|ACE05470.1| 3' exoribonuclease [Candidatus Amoebophilus asiaticus 5a2]
          Length = 713

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 64/150 (42%), Gaps = 20/150 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI--RNTKHGW 58
           +RL GR+ +++R I         A GS L   G+T  LTT TL  K+   +  R   +G+
Sbjct: 320 LRLDGRKLDEIRAIESEIDYLPAAHGSSLFTRGETQSLTTVTLGTKLDEQLIDRALLNGY 379

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSR 110
                 Y     STG     E    R  GR     R IG      RAL+ V+ L      
Sbjct: 380 SRFMLHYNFPSFSTG-----EVKFNRGPGR-----REIGHGHLAMRALKKVLPLDTENPY 429

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDC 140
            I I  D+++++G +  A +    +AL D 
Sbjct: 430 TIRIVSDILESNGSSSMATVCAGSLALMDA 459



 Score = 38.5 bits (88), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 5/92 (5%)

Query: 12  REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWITAEYGMLPRS 69
           REI++ T +++K A+GS +V+ GDT LL T   ++++ P       H     ++    + 
Sbjct: 16  REITIETGKLAKQADGSVVVRMGDTMLLATVVFKQELDPTVDFLPLHVEYQEKFAAAGKI 75

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSV 101
            G  ++RE   G+ G     I R++ RA+R +
Sbjct: 76  PGGFLRRE---GKLGDHEVLISRLVDRAIRPL 104


>gi|160944532|ref|ZP_02091760.1| hypothetical protein FAEPRAM212_02045 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444314|gb|EDP21318.1| hypothetical protein FAEPRAM212_02045 [Faecalibacterium prausnitzii
           M21/2]
          Length = 713

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 76/180 (42%), Gaps = 37/180 (20%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  N++R ++    +     GS +   G T +LTT TL    + ++   + + +  
Sbjct: 322 RVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTK 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111
                Y   P S G     EA + R  GR     R IG      RAL  V  L +L    
Sbjct: 382 RYIHHYNFPPYSVG-----EARAPRSPGR-----REIGHGALAERALVPV--LPSLEEFP 429

Query: 112 IIIDC--DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             I C  +V+ ++G T  A+I G+ +AL D                 +K  VA ISCG++
Sbjct: 430 YTIRCVSEVLSSNGSTSQASICGSTLALMDA-------------GVPIKAPVAGISCGLI 476


>gi|163941544|ref|YP_001646428.1| polynucleotide phosphorylase/polyadenylase [Bacillus
           weihenstephanensis KBAB4]
 gi|229061410|ref|ZP_04198755.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603]
 gi|229134614|ref|ZP_04263424.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST196]
 gi|226702619|sp|A9VT44|PNP_BACWK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|163863741|gb|ABY44800.1| Polyribonucleotide nucleotidyltransferase [Bacillus
           weihenstephanensis KBAB4]
 gi|228648875|gb|EEL04900.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST196]
 gi|228717833|gb|EEL69481.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603]
          Length = 717

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT   K P   +N     
Sbjct: 3   QEKQVFSIDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATA-SKEP---KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|229174473|ref|ZP_04302005.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus MM3]
 gi|228609033|gb|EEK66323.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus MM3]
          Length = 712

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT   K P   +N     
Sbjct: 3   QEKQVFSIDLAGRQLTVETSQLAKQANGAVLVRYGDTAVLSTATA-SKEP---KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|332976846|gb|EGK13671.1| polyribonucleotide nucleotidyltransferase [Desmospora sp. 8437]
          Length = 697

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 18/131 (13%)

Query: 16  LTRRVSKYAE---GSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGML 66
           LT  V KYA    G+ LV++GDT ++ TAT  ++       P+ +   +  +     G +
Sbjct: 16  LTMEVGKYANQANGAVLVRYGDTAVMATATASDEPKDLGFFPLTVNYEERLYAV---GKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   ++    R+I R +R +         Q++     +  D  T 
Sbjct: 73  P---GGFIKRE---GRPSEKAILASRLIDRPIRPLFPEGYRNDVQVVTTVMSVDQDCSTE 126

Query: 127 TAAITGAWVAL 137
            AA+ GA  AL
Sbjct: 127 IAAMIGASTAL 137


>gi|255322462|ref|ZP_05363607.1| polyribonucleotide nucleotidyltransferase [Campylobacter showae
           RM3277]
 gi|255300370|gb|EET79642.1| polyribonucleotide nucleotidyltransferase [Campylobacter showae
           RM3277]
          Length = 731

 Score = 42.7 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 4/139 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGW 58
           +R  GR+  ++R IS+   +   A GSCL   G T  L  ATL  +    M+   T+ G 
Sbjct: 341 VRADGRELKEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGTDGDAQMYDMLTEKGA 400

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +T ++       G  V   +     G R      +  RAL   +D+++  + +++   ++
Sbjct: 401 VTDKFMFNYNFPGFSVGEASPLKAPGRRELGHGNLAKRALAPSIDVNSPYTIRLV--SEI 458

Query: 119 IQADGGTRTAAITGAWVAL 137
           ++++G +  A++ G  +AL
Sbjct: 459 LESNGSSSMASVCGGSLAL 477


>gi|229168546|ref|ZP_04296269.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621]
 gi|228614952|gb|EEK72054.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621]
          Length = 717

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT   K P   +N     
Sbjct: 3   QEKQVFSIDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATA-SKEP---KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|23099059|ref|NP_692525.1| polynucleotide phosphorylase/polyadenylase [Oceanobacillus
           iheyensis HTE831]
 gi|81746388|sp|Q8EQT7|PNP_OCEIH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|22777287|dbj|BAC13560.1| polyribonucleotide nucleotidyltransferase alpha chain
           [Oceanobacillus iheyensis HTE831]
          Length = 705

 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 97/223 (43%), Gaps = 27/223 (12%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
           ++K A G+C++ +GDT +L+ AT   +   +P +     +       G +P   G  +KR
Sbjct: 24  LAKQANGACMIHYGDTSVLSVATASSEPKDLPFFPLTVNYEERLYAVGKIP---GGFIKR 80

Query: 77  EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
           E   GR   ++    R+I R +R +         Q+I     +  D  +  AA+ G+ +A
Sbjct: 81  E---GRPSEKAILSSRLIDRPIRPLFPDGFRNEVQVISTVMSVDQDCPSEIAAMIGSSIA 137

Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT-D 195
           L      + D           +  +A ++ G + G  I++    +++  D++     T D
Sbjct: 138 L-----SVSDIP--------FEQPIAGVNVGRVDGEFIINPTIEQEAKSDIELTVAGTKD 184

Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           + ++VE  G+ E     +D     +    + I  L+  Q++++
Sbjct: 185 AINMVEA-GANE---VPEDIMLEAIMFGHEEIKRLVAFQEELV 223


>gi|295322022|pdb|3M85|G Chain G, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
           Active Site
 gi|295322023|pdb|3M85|H Chain H, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
           Active Site
 gi|295322024|pdb|3M85|I Chain I, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
           Active Site
          Length = 259

 Score = 42.4 bits (98), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 8/108 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  ++ R++ +   V + AEGS LVK GDT ++    ++   P        G I  
Sbjct: 23  RIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEPAP-DTPDRGVIIV 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL 107
              ++P ++          G     S E+ R++ R +R    VDLS L
Sbjct: 82  NAELVPLASPT-----FEPGPPDENSIELARVVDRGIRESEAVDLSKL 124


>gi|291287262|ref|YP_003504078.1| polyribonucleotide nucleotidyltransferase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884422|gb|ADD68122.1| polyribonucleotide nucleotidyltransferase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 711

 Score = 42.4 bits (98), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 57/143 (39%), Gaps = 8/143 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R+I +  R+   A GS L   G+T  L  ATL  K    I +T +G    
Sbjct: 320 RIDGRSYTDIRDIDIETRLLPMAHGSGLFTRGETQALVVATLGTKTDTQILDTIYGDGKK 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G          R+ G     +R + + L    D        I I  +
Sbjct: 380 RFMLHYNFPPFCVGEVGFLRGPGRREIGHGALAERSLAQVLPDADDF----PYTIRIVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           V++++G +  A + G  +AL D 
Sbjct: 436 VLESNGSSSMATVCGGCLALMDA 458


>gi|307155205|ref|YP_003890589.1| polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7822]
 gi|306985433|gb|ADN17314.1| polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7822]
          Length = 718

 Score = 42.4 bits (98), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 35/227 (15%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72
           ++  A GS L++ GDT +L TAT   KVP          +T +Y       G +P   G 
Sbjct: 22  LAPQAGGSVLIQSGDTAVLVTAT---KVPGR-EGVDFLPLTVDYEERLYAAGRIP---GG 74

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            ++RE   GR   ++  I R+I R LR +         Q+I     +  +      A+TG
Sbjct: 75  FLRRE---GRPPEKAILISRLIDRPLRPLFPHWLRDDLQVIATTLSMDEEVPPDVLAVTG 131

Query: 133 AWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
           A +A+               L+++   G +AA+  G++    I++  Y E +T D+D   
Sbjct: 132 ASLAVI--------------LAKIPFFGPMAAVRVGLVGDDFIINPTYKEINTGDLDLVV 177

Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             +  G +V V+  A +    +      ++   + + DLI  Q DVI
Sbjct: 178 AGSPEG-VVMVEAGANQ--LPEQDIIEAIDFGYEAVRDLIAAQLDVI 221


>gi|229031437|ref|ZP_04187437.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1271]
 gi|228729726|gb|EEL80706.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1271]
          Length = 712

 Score = 42.4 bits (98), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT   K P   +N     
Sbjct: 3   QEKQVFSIDLAGRQLTVETSQLAKQANGAVLVRYGDTAVLSTATA-SKEP---KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|257439280|ref|ZP_05615035.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
           prausnitzii A2-165]
 gi|257198155|gb|EEU96439.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
           prausnitzii A2-165]
          Length = 714

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 76/180 (42%), Gaps = 37/180 (20%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  N++R ++    +     GS +   G T +LTT TL    + ++   + + +  
Sbjct: 322 RVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTK 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111
                Y   P S G     EA + R  GR     R IG      RAL  V  L +L    
Sbjct: 382 RYIHHYNFPPYSVG-----EARAPRSPGR-----REIGHGALAERALVPV--LPSLEEFP 429

Query: 112 IIIDC--DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             I C  +V+ ++G T  A+I G+ +AL D                 +K  VA ISCG++
Sbjct: 430 YTIRCVSEVLSSNGSTSQASICGSTLALMDA-------------GVPIKAPVAGISCGLI 476


>gi|119356388|ref|YP_911032.1| polynucleotide phosphorylase/polyadenylase [Chlorobium
           phaeobacteroides DSM 266]
 gi|187610253|sp|A1BDY1|PNP_CHLPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|119353737|gb|ABL64608.1| Polyribonucleotide nucleotidyltransferase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 732

 Score = 42.4 bits (98), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 26/144 (18%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T +++K A+G+ LV+ GDT +L T    +  P    N  +  +  EY       G  P  
Sbjct: 19  TGKMAKQADGAALVRLGDTMVLATVVSSKTPPPA--NQDYFPLQVEYREKYSAAGKFP-- 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII---------DCDVIQ 120
            G   KRE   GR   +     R+I RALR +     L   QII+         D DV+ 
Sbjct: 75  -GGFFKRE---GRPSEKEILTARLIDRALRPLFPDGYLFETQIIVTVFSSDQINDADVL- 129

Query: 121 ADGGTRTAAITGAWVALHDCLQHM 144
             G   +AAI  + +  H+ +  +
Sbjct: 130 -GGVAASAAIMVSDIPFHNSMSEV 152



 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 8/142 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           RL GR  +++R IS+   +   A GS L   G+T  L T TL  K        + ++   
Sbjct: 332 RLDGRTLDEIRPISIELGIIPRAHGSALFTRGETQALVTITLGTKKDAQSVDTLTDSADK 391

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G     +R I     S  D        I I  D
Sbjct: 392 RFMLHYNFPPFSVGETGRVGGTGRREIGHGNLAERSIKMVSPSETDF----PYTIRIVSD 447

Query: 118 VIQADGGTRTAAITGAWVALHD 139
           +++++G +  A++ G  +AL D
Sbjct: 448 ILESNGSSSMASVCGGTLALMD 469


>gi|189346136|ref|YP_001942665.1| polynucleotide phosphorylase/polyadenylase [Chlorobium limicola DSM
           245]
 gi|257096673|sp|B3EH06|PNP_CHLL2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189340283|gb|ACD89686.1| Polyribonucleotide nucleotidyltransferase [Chlorobium limicola DSM
           245]
          Length = 736

 Score = 42.4 bits (98), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 26/144 (18%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T +++K A+GS +V+ GDT +L T    +K P    N  +  +  EY       G  P  
Sbjct: 22  TGKMAKQADGSVVVRLGDTMVLATVVSSKKTPPP--NQDYFPLQVEYREKYSAAGKFP-- 77

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII---------DCDVIQ 120
            G   KRE+   R   +     R+I RALR +     L   QII+         D DV+ 
Sbjct: 78  -GGFFKRES---RPSEKEILSARLIDRALRPLFPDGYLFETQIIVTVISSDQINDADVL- 132

Query: 121 ADGGTRTAAITGAWVALHDCLQHM 144
             G   +AAI  + +  H+ +  +
Sbjct: 133 -GGLAASAAIMVSDIPFHNAMSEV 155



 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 8/142 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           RL GR   ++R IS+   +   A GS L   G+T  L T TL  K        + N    
Sbjct: 335 RLDGRTLEEVRPISIELGIIPRAHGSALFTRGETQALVTITLGTKKDAQSVDNLTNNADK 394

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RA++ V          + I  D
Sbjct: 395 KFMLHYNFPPFSVGETGRIGSTGRREIGHGN----LAERAIKMVAPPEQEFPYTVRIVSD 450

Query: 118 VIQADGGTRTAAITGAWVALHD 139
           +++++G +  A++ G  +AL D
Sbjct: 451 ILESNGSSSMASVCGGTLALMD 472


>gi|72012895|ref|XP_785829.1| PREDICTED: similar to LOC495942 protein [Strongylocentrotus
           purpuratus]
 gi|115926426|ref|XP_001179028.1| PREDICTED: similar to LOC495942 protein [Strongylocentrotus
           purpuratus]
          Length = 192

 Score = 42.4 bits (98), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 32/188 (17%)

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
           I  +Y M   ST  R  R      QG R S E+   + R   + +        QI I   
Sbjct: 18  INCQYSMATFSTNERKNRP-----QGDRKSTEMSLHLQRTFEATIQTHLYPRSQIDIFVQ 72

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           ++QADGG   A +  A +A+ +    M+D             +V A S G +   P+ D+
Sbjct: 73  ILQADGGNYCACVNAATLAIINAGIPMKD-------------YVCACSSGYVNNTPLTDV 119

Query: 178 DYGEDS----TIDVD--------ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA-K 224
            Y E+S     + V         A F M +  H+  ++   E A+      +A++N A K
Sbjct: 120 SYLEESQGGPVVTVAMLPKSEQIALFKMDNRLHVDHLEQVLEVASKGCKDMYAVMNAAVK 179

Query: 225 DRIADLIK 232
           + ++ + K
Sbjct: 180 EHVSRMAK 187


>gi|281412875|ref|YP_003346954.1| polyribonucleotide nucleotidyltransferase [Thermotoga naphthophila
           RKU-10]
 gi|281373978|gb|ADA67540.1| polyribonucleotide nucleotidyltransferase [Thermotoga naphthophila
           RKU-10]
          Length = 708

 Score = 42.4 bits (98), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 94/230 (40%), Gaps = 34/230 (14%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRSTG 71
           +V+K + GS LV+FGDT +L TA + +K       VP+ +   +  +     G +P   G
Sbjct: 19  KVAKQSSGSVLVRFGDTVVLATANISDKAVEGVDFVPLTVEFQERFYAA---GKIP---G 72

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
             +KRE   G+    +    R+I R +R +         Q+I+    +          I 
Sbjct: 73  GFIKRE---GKPSESAILSARLIDRPIRPLFPKKLRNEVQVIVTVLSVDPSIPPDVVGIF 129

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            A +AL+              +S++  +G VA I  G   G   + L   ED    +   
Sbjct: 130 AASLALN--------------VSKIPFEGVVAGIRVGYRDGQ-FIALPSEEDIEKGLMDI 174

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            V      +  V+G A+  T  ++     L  A   I +L+  Q++++S 
Sbjct: 175 TVAGTKDAVTMVEGEAKEVT--EEDMVKALRFAHSVIKELVDFQEEILSE 222


>gi|229019001|ref|ZP_04175843.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1273]
 gi|229025246|ref|ZP_04181668.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1272]
 gi|228736074|gb|EEL86647.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1272]
 gi|228742329|gb|EEL92487.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1273]
          Length = 712

 Score = 42.4 bits (98), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT   K P   +N     
Sbjct: 3   QEKQVFSIDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATA-SKEP---KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMFGSSLAL 138


>gi|116073519|ref|ZP_01470781.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           RS9916]
 gi|116068824|gb|EAU74576.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           RS9916]
          Length = 721

 Score = 42.4 bits (98), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 96/234 (41%), Gaps = 32/234 (13%)

Query: 12  REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64
           REI LT  R +  A GS +++ GDT +L TAT        + +P+     +  +      
Sbjct: 13  REIRLTTGRYAPQAGGSVMIECGDTSVLVTATRSSGREGIDFLPLICDYEERLYAAG--- 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R  G+ ++RE   GR   R+  I R+I R +R +         QI+  C  +     
Sbjct: 70  ---RIPGSFMRRE---GRPPERATLISRLIDRPMRPLFPNWLRDDLQIVATCMSLDERVP 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+TGA +A                     +G +AA+  G+L    +++  Y E   
Sbjct: 124 ADVLAVTGASLA-------------TLMAGIPFQGPMAAVRVGLLGDDFVLNPSYREIER 170

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            D+D     T  G +V V+  A +    +      ++   + + +LIK Q+ ++
Sbjct: 171 GDLDLVVAGTPEG-VVMVEAGANQ--LPEQDVIEAIDFGYEAVCELIKAQQAIL 221


>gi|83589904|ref|YP_429913.1| polynucleotide phosphorylase/polyadenylase [Moorella thermoacetica
           ATCC 39073]
 gi|123524642|sp|Q2RJL9|PNP_MOOTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|83572818|gb|ABC19370.1| Polyribonucleotide nucleotidyltransferase [Moorella thermoacetica
           ATCC 39073]
          Length = 747

 Score = 42.4 bits (98), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 83/197 (42%), Gaps = 38/197 (19%)

Query: 12  REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEY 63
           R+++L T R++K A G+ +V +G T +L TAT  E+        P+ +   +  +     
Sbjct: 14  RDLTLETGRLAKQAGGAVMVSYGGTMVLVTATASEEPREGIDFFPLTVDYEERLYAA--- 70

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           G +P   G  +KRE   GR   ++    R+I R +R +          ++     +  D 
Sbjct: 71  GKIP---GGFIKRE---GRPSEKAILSARLIDRPIRPLFPKFYRNDVHVVATVMSVDQDC 124

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGED 182
               A I GA  AL               LS +   G + A+S G++   P+++    ED
Sbjct: 125 PPNVAGIIGASAAL--------------MLSAIPFAGPIGAVSVGLIDNRPVINPTLEED 170

Query: 183 S------TIDVDANFVM 193
           S      T+   AN +M
Sbjct: 171 SRSSLNLTVAGTANAIM 187


>gi|74316711|ref|YP_314451.1| polynucleotide phosphorylase/polyadenylase [Thiobacillus
           denitrificans ATCC 25259]
 gi|123759157|sp|Q3SKX5|PNP_THIDA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|74056206|gb|AAZ96646.1| polyribonucleotide nucleotidyltransferase protein [Thiobacillus
           denitrificans ATCC 25259]
          Length = 706

 Score = 42.4 bits (98), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 27/175 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I++   V   A GS L   G+T  L   TL    +E+    +  +   
Sbjct: 315 RIDGRDTRTVRPITIRTGVLPRAHGSALFTRGETQALVVTTLGTGRDEQTIDALEGSYSD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL +V+         + +
Sbjct: 375 RFMLHYNMPPYATGE-------TGRVGSPKRREIGHGRLAKRALLAVLPSKEEFGYTMRV 427

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ G  ++L D                 LK HVA I+ G++
Sbjct: 428 VSEITESNGSSSMASVCGGCLSLMDA-------------GAPLKAHVAGIAMGLI 469


>gi|332704834|ref|ZP_08424922.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554983|gb|EGJ52027.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 745

 Score = 42.4 bits (98), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 92/228 (40%), Gaps = 31/228 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
           T R +  A+G+ LV+ GDT +L TA    L E    +     +  ++   G +P   G  
Sbjct: 23  TGRFANQADGAVLVRSGDTVVLVTAVTQALPEDKGFFPLTCNYQEMSYAAGRIP---GGY 79

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--AAIT 131
            +RE   GR   R   + R+I R LR           QII    V+ AD        A+T
Sbjct: 80  FRREI--GRPSDRETLVSRLIDRPLRPSFPKGFRDEVQII--ATVLSADKNVNPDVLAVT 135

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
           GA  ALH              +S++   G +A+   G + G  +    Y ++ T     N
Sbjct: 136 GASAALH--------------ISKIPFNGPLASTRVGYVNGGFVAFPTY-QNITELSSLN 180

Query: 191 FVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            V+  S   +V V+G AE    S+D     +      I  L  LQ ++
Sbjct: 181 MVLAASRNAVVMVEGGAE--FMSEDLLAEAIAFGHKMIIPLFDLQDEL 226



 Score = 35.0 bits (79), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 76/200 (38%), Gaps = 38/200 (19%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
           +R+ GR    +R +S+   +     GS L K G+T  L  ATL     E+++        
Sbjct: 321 VRIDGRDLTTVRPLSIEVGLLPQTHGSALFKRGETSSLAIATLGSSRDEQRIETLTGEIT 380

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
            G++   Y   P            S R+ G       +  RA++ V+         I + 
Sbjct: 381 KGFML-HYNFPPFCVNEARFLRGPSRREIGHGN----LAERAIKPVLPADGEFPFTIRVV 435

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            + ++++G +  AA+ G  +AL D                 +K  VA I+ G+      V
Sbjct: 436 AETMESNGSSSMAAVCGGCLALMDA-------------GVPIKAPVAGIAMGLAK----V 478

Query: 176 DLDYGEDSTIDVDANFVMTD 195
           D DY           FV+TD
Sbjct: 479 DDDY-----------FVLTD 487


>gi|188528628|ref|NP_149100.2| polyribonucleotide nucleotidyltransferase 1, mitochondrial
           precursor [Homo sapiens]
 gi|115502437|sp|Q8TCS8|PNPT1_HUMAN RecName: Full=Polyribonucleotide nucleotidyltransferase 1,
           mitochondrial; AltName: Full=3'-5' RNA exonuclease
           OLD35; AltName: Full=PNPase old-35; AltName:
           Full=Polynucleotide phosphorylase 1; Short=PNPase 1;
           AltName: Full=Polynucleotide phosphorylase-like protein;
           Flags: Precursor
 gi|62988884|gb|AAY24271.1| unknown [Homo sapiens]
 gi|119620492|gb|EAX00087.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_b [Homo
           sapiens]
          Length = 783

 Score = 42.4 bits (98), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 39/210 (18%)

Query: 9   NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAE 62
           N+  EIS + +++++A+GS +V+ GDT ++ TA  + K      +P+ +   +     A 
Sbjct: 53  NRKLEIS-SGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AA 108

Query: 63  YGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            G +P    N ++RE      G   +EI   R+I R++R +         Q++  C+++ 
Sbjct: 109 AGRIPT---NYLRREI-----GTSDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLA 158

Query: 121 ADGGTRT--AAITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDL 177
            DG       AI GA VAL               LS +   G V A+  G++ G  +V+ 
Sbjct: 159 VDGVNEPDVLAINGASVAL--------------SLSDIPWNGPVGAVRIGIIDGEYVVNP 204

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207
              E S+  ++          IV ++ SAE
Sbjct: 205 TRKEMSSSTLNLVVAGAPKSQIVMLEASAE 234


>gi|301756464|ref|XP_002914081.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Ailuropoda melanoleuca]
          Length = 784

 Score = 42.0 bits (97), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 38/200 (19%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++++A+GS +V+ GDT ++ TA  + K      +P+ +   +     A  G +P    N
Sbjct: 62  KLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AAAGRIPT---N 115

Query: 73  RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128
            ++RE      G   +EI   R+I R++R +         Q++  C+++  DG       
Sbjct: 116 YLRREI-----GSSDKEILTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNEPDVL 168

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AI GA VAL               LS +   G + A+  GM+ G  +V+    E S+  +
Sbjct: 169 AINGASVAL--------------SLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTL 214

Query: 188 DANFVMTDSGHIVEVQGSAE 207
           +          IV ++ SAE
Sbjct: 215 NLVVAGAPKSQIVMMEASAE 234


>gi|225865786|ref|YP_002751164.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB102]
 gi|254782705|sp|C1EP29|PNP_BACC3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225790852|gb|ACO31069.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB102]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 103/248 (41%), Gaps = 43/248 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT  ++     +N     
Sbjct: 3   QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
           ++     +  D  +  AA+ G+ +AL      + D           +G +A  + G + G
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL-----SISDIP--------FEGPIAGTTVGRING 159

Query: 172 YPIVDLDYGEDSTIDVDANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
             +++    +    D+      T D+ ++VE    A      ++     +    D I  L
Sbjct: 160 EFVINPTVEQQEQSDIHLVVAGTKDAINMVE----AGADQVPEETMLEAIMFGHDEIKRL 215

Query: 231 IKLQKDVI 238
           I  Q++++
Sbjct: 216 IAFQEEIV 223


>gi|57641568|ref|YP_184046.1| exosome complex RNA-binding protein Rrp42 [Thermococcus
           kodakarensis KOD1]
 gi|73919277|sp|Q5JIR7|ECX2_PYRKO RecName: Full=Probable exosome complex exonuclease 2
 gi|57159892|dbj|BAD85822.1| exosome subunit Rrp42p homolog, 3'-5' exoribonuclease [Thermococcus
           kodakarensis KOD1]
          Length = 272

 Score = 42.0 bits (97), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 90/240 (37%), Gaps = 27/240 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT--TATLEEKVPMWIRNTKHGWI 59
           R+ GR     R++ +   V + AEGS  V+ GDT +L    A L E  P        G I
Sbjct: 24  RIDGRSFEDYRDLEIKVNVIEKAEGSAWVRLGDTQVLVGIKAELGEPFPDL---PDRGVI 80

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALG------SRQ 111
           T    ++P ++          G     + E+ R++ R +R    VDL  L        R 
Sbjct: 81  TTNVELVPLASPT-----FEPGPPDENAIELARVVDRGIRESQAVDLEKLVIVPGKLVRV 135

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK-------GHVA-A 163
           I ID  V+   G    A+  GA  AL        + + +    ++L         HV   
Sbjct: 136 IFIDVHVLDHGGNLLDASGIGAIAALLSTKLPKVNYNEETGEVEILDEYEPLPVNHVPIP 195

Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           ++   +    +VD    E+  +D        ++GHI   Q   E   F  +     L +A
Sbjct: 196 VTFAKIGNSIVVDPSLDEERVMDGRLTITTDETGHISAAQ-KGEAGAFKMEEVMYALEVA 254


>gi|282600904|ref|ZP_05980076.2| polyribonucleotide nucleotidyltransferase [Subdoligranulum
           variabile DSM 15176]
 gi|282570791|gb|EFB76326.1| polyribonucleotide nucleotidyltransferase [Subdoligranulum
           variabile DSM 15176]
          Length = 759

 Score = 42.0 bits (97), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 26/180 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  N++R ++    +     GS +   G T +LT  TL    + ++   + +T++ 
Sbjct: 363 RVDGRGINEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTVCTLGSTKDAQLMDDLSDTQYK 422

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIID 115
                Y   P S G     EA + R  GR +EI    +  RAL  V+   +     I   
Sbjct: 423 RYIHHYNFPPYSVG-----EARAPRSPGR-REIGHGNLAERALVPVLPDQSEFPYTIRCV 476

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPI 174
            +V+ ++G T  A+I G+ +AL D                 +K  VA ISCG++  G P+
Sbjct: 477 SEVLSSNGSTSQASICGSTLALMDA-------------GVPIKAPVAGISCGLITDGDPL 523


>gi|187471099|sp|B0C1M5|PNP_ACAM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 716

 Score = 42.0 bits (97), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 102/237 (43%), Gaps = 34/237 (14%)

Query: 12  REISLT-RRVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64
           REI LT  R +  A G  L++ G+T +L TAT        + +P+ +   +  +      
Sbjct: 13  REIKLTIGRFAPQAGGCVLIESGETSVLVTATRSSGREGIDFLPLLVDYEERLYAAG--- 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R  G  ++RE   GR   ++    R+I R +R +         QI+     +     
Sbjct: 70  ---RVPGGFLRRE---GRPPEKATLTCRLIDRPMRPLFPNWLRDDLQIVATTISMDEQVP 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183
               A+TGA VA                L+++  KG +AA+  G++    I++  Y E S
Sbjct: 124 PDVLAVTGASVATL--------------LAKIPFKGPMAAVRVGLVGDDFIINPTYEEIS 169

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             ++D     +  G I+   G+ E A   QD   A ++   + + DLIK QK++I+ 
Sbjct: 170 EGELDLVVAGSPDGVIMVEAGANEVA--EQDMIEA-IDFGYEVVCDLIKAQKELIAE 223


>gi|114577443|ref|XP_515490.2| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial [Pan troglodytes]
          Length = 783

 Score = 42.0 bits (97), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 39/210 (18%)

Query: 9   NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAE 62
           N+  EIS + +++++A+GS +V+ GDT ++ TA  + K      +P+ +   +     A 
Sbjct: 53  NRKLEIS-SGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AA 108

Query: 63  YGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            G +P    N ++RE      G   +EI   R+I R++R +         Q++  C+++ 
Sbjct: 109 AGRIPT---NYLRREI-----GTSDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLA 158

Query: 121 ADGGTRT--AAITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDL 177
            DG       AI GA VAL               LS +   G V A+  G++ G  +V+ 
Sbjct: 159 VDGVNEPDVLAINGASVAL--------------SLSDIPWNGPVGAVRIGIIDGEYVVNP 204

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207
              E S+  ++          IV ++ SAE
Sbjct: 205 TRKEMSSSTLNLVVAGAPKSQIVMLEASAE 234


>gi|115653057|ref|XP_788673.2| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1
           [Strongylocentrotus purpuratus]
 gi|115929402|ref|XP_001192933.1| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1
           [Strongylocentrotus purpuratus]
          Length = 981

 Score = 42.0 bits (97), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 24/151 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE------KVPMWIRNTK 55
           R  GR+ ++MR+I+ +  + K   GS L + G T +  T T +         P+W  + +
Sbjct: 538 RCDGREADEMRDITCSVDLYKPLHGSALFQRGQTQVFCTVTFDSIESALRADPVWQEDIR 597

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGS 109
                  Y   P +T         +GR GG +   +R +G      + LR VV      +
Sbjct: 598 EKNFMLHYEFPPYATNE-------TGRTGGIN---RRELGHGALAEKGLRPVVPSDYPFT 647

Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDC 140
             I +  +V++++G +  A + G  +AL D 
Sbjct: 648 --IRLTSEVLESNGSSSMATVCGGSLALMDA 676


>gi|325299313|ref|YP_004259230.1| Polyribonucleotide nucleotidyltransferase [Bacteroides salanitronis
           DSM 18170]
 gi|324318866|gb|ADY36757.1| Polyribonucleotide nucleotidyltransferase [Bacteroides salanitronis
           DSM 18170]
          Length = 729

 Score = 42.0 bits (97), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 10/143 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           RL GR+ N++R I        Y  GS +   G+T  L+T TL    +EKV   + +    
Sbjct: 319 RLDGRKTNEIRPIWCEVSPLPYPHGSAIFTRGETQSLSTVTLGTKADEKVVDDVLDQHKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +        +++   D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAGYPYCVRVM--SD 432

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           +++++G +  A +    +AL D 
Sbjct: 433 ILESNGSSSMATVCAGTLALMDA 455


>gi|145520971|ref|XP_001446341.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413818|emb|CAK78944.1| unnamed protein product [Paramecium tetraurelia]
          Length = 227

 Score = 42.0 bits (97), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 72/187 (38%), Gaps = 31/187 (16%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   QMR I     +    +GSCL K G T ++        V      T+   +  
Sbjct: 5   RQDGRNLQQMRNIEFKLAIDLSVDGSCLYKQGLTEVICL------VQGPRAKTQSELLLI 58

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR----SVVDLSALGSRQIIIDCD 117
           EY + P S         +  ++  +  +   M    L+    +++ L   G  +I I   
Sbjct: 59  EYSVSPFSN--------IESKRSSKFDKDYSMFAENLKESFENLIILDENGKSEISISVC 110

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           VIQ DG +++A      +AL D    M+D              + +++ G+  G  IVDL
Sbjct: 111 VIQNDGSSKSAVFNAITLALLDAGVSMKD-------------FLVSVTVGLDQGNLIVDL 157

Query: 178 DYGEDST 184
              E  T
Sbjct: 158 TQEESKT 164


>gi|119620491|gb|EAX00086.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_a [Homo
           sapiens]
          Length = 500

 Score = 42.0 bits (97), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 39/210 (18%)

Query: 9   NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAE 62
           N+  EIS + +++++A+GS +V+ GDT ++ TA  + K      +P+ +   +     A 
Sbjct: 53  NRKLEIS-SGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AA 108

Query: 63  YGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            G +P    N ++RE      G   +EI   R+I R++R +         Q++  C+++ 
Sbjct: 109 AGRIPT---NYLRREI-----GTSDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLA 158

Query: 121 ADGGTRT--AAITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDL 177
            DG       AI GA VAL               LS +   G V A+  G++ G  +V+ 
Sbjct: 159 VDGVNEPDVLAINGASVAL--------------SLSDIPWNGPVGAVRIGIIDGEYVVNP 204

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207
              E S+  ++          IV ++ SAE
Sbjct: 205 TRKEMSSSTLNLVVAGAPKSQIVMLEASAE 234


>gi|147677610|ref|YP_001211825.1| polynucleotide phosphorylase/polyadenylase [Pelotomaculum
           thermopropionicum SI]
 gi|187610305|sp|A5D2S6|PNP_PELTS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146273707|dbj|BAF59456.1| polyribonucleotide nucleotidyltransferase [Pelotomaculum
           thermopropionicum SI]
          Length = 734

 Score = 42.0 bits (97), Expect = 0.069,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 21/152 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T R++  A G+  V++GDT +L TAT+   V   I       +T +Y       G +P  
Sbjct: 22  TGRLANQASGAVFVRYGDTAVLVTATVAPTVRAGIDFFP---LTVDYEERFYAVGKIP-- 76

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KRE+   R   ++    R+I R +R +         Q+I     +  D     AA
Sbjct: 77  -GGFIKRES---RPSEKAILSGRLIDRPIRPLFPKEMRNEVQVIATILSVDQDNAPEIAA 132

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV 161
           + GA  AL     H+ +   KF +  V+ G V
Sbjct: 133 MVGASAAL-----HISEIPLKFPIGGVIVGRV 159



 Score = 39.7 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 8/143 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR  N++R IS+   V     GS L   G T +L+  TL    EE++   +   + 
Sbjct: 325 LRIDGRALNEVRPISVEVGVLPRPHGSGLFTRGQTQILSVVTLGTVSEEQILDGLGVEES 384

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG      +   R+ G       +  RAL +V+         I I  
Sbjct: 385 KRFMHHYNFPPYSTGETRPLRSPGRREIGHGA----LAERALAAVIPGEEEFPYTIRIVS 440

Query: 117 DVIQADGGTRTAAITGAWVALHD 139
           + ++++G T   ++ G+ +AL D
Sbjct: 441 EALESNGSTSMGSVCGSTLALMD 463


>gi|229104369|ref|ZP_04235038.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-28]
 gi|228679067|gb|EEL33275.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-28]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT  ++     +N     
Sbjct: 3   QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|229180084|ref|ZP_04307428.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 172560W]
 gi|228603293|gb|EEK60770.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 172560W]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT  ++     +N     
Sbjct: 3   QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|146329836|ref|YP_001209934.1| polynucleotide phosphorylase/polyadenylase [Dichelobacter nodosus
           VCS1703A]
 gi|187610297|sp|A5EXU0|PNP_DICNV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146233306|gb|ABQ14284.1| polyribonucleotide nucleotidyltransferase [Dichelobacter nodosus
           VCS1703A]
          Length = 693

 Score = 42.0 bits (97), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 8/143 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59
           R+ GR    +R I++   V   A GS L   G+T  L  ATL       + +T  G +  
Sbjct: 315 RIDGRDTKTVRPITIHTSVLPRAHGSALFTRGETQALVVATLGTGRDAQLLDTLDGEVRD 374

Query: 60  --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y  LP S G   +  +   R+ G      R+  R L +V+ L       I +  +
Sbjct: 375 NFMLHYNFLPFSVGEIGRIGSPKRREIGHG----RLARRGLSAVLPLEEDFPYTIRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           + +++G +  A++ G+ +AL D 
Sbjct: 431 ITESNGSSSMASVCGSSLALMDA 453


>gi|229098276|ref|ZP_04229223.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-29]
 gi|229117294|ref|ZP_04246672.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-3]
 gi|228666194|gb|EEL21658.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-3]
 gi|228685174|gb|EEL39105.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-29]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT  ++     +N     
Sbjct: 3   QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|229146378|ref|ZP_04274749.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST24]
 gi|228637011|gb|EEK93470.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST24]
          Length = 717

 Score = 42.0 bits (97), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT  ++     +N     
Sbjct: 3   QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|228922561|ref|ZP_04085861.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228954083|ref|ZP_04116112.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229047493|ref|ZP_04193083.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH676]
 gi|229071305|ref|ZP_04204528.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F65185]
 gi|229081062|ref|ZP_04213572.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock4-2]
 gi|229111278|ref|ZP_04240831.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock1-15]
 gi|229129083|ref|ZP_04258056.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-Cer4]
 gi|229152007|ref|ZP_04280202.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1550]
 gi|229191976|ref|ZP_04318946.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
           10876]
 gi|296504303|ref|YP_003666003.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
           BMB171]
 gi|228591527|gb|EEK49376.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
           10876]
 gi|228631356|gb|EEK87990.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1550]
 gi|228654320|gb|EEL10185.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-Cer4]
 gi|228672054|gb|EEL27345.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock1-15]
 gi|228702106|gb|EEL54582.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock4-2]
 gi|228711759|gb|EEL63711.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F65185]
 gi|228723740|gb|EEL75095.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH676]
 gi|228805649|gb|EEM52239.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228836990|gb|EEM82331.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|296325355|gb|ADH08283.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
           BMB171]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT  ++     +N     
Sbjct: 3   QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|73974735|ref|XP_857497.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal
           RNA processing protein 41) (Exosome component 4) (p12A)
           isoform 4 [Canis familiaris]
          Length = 244

 Score = 42.0 bits (97), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 13/157 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L       E   +     +   + 
Sbjct: 13  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEARGVRTLTQRKALVN 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QIIIDCDV 118
            +Y     STG R +R       G R S E+   + +   + + L+ L  R QI I   V
Sbjct: 73  CQYSSATFSTGERKRRP-----HGDRKSCEMGLHLRQTFEAAI-LTQLHPRSQIDIYVQV 126

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMED----CSNKF 151
           +QADGGT  A +  A +A+ D    M D    CS  F
Sbjct: 127 LQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGF 163


>gi|327400939|ref|YP_004341778.1| exosome complex exonuclease 2 [Archaeoglobus veneficus SNP6]
 gi|327316447|gb|AEA47063.1| exosome complex exonuclease 2 [Archaeoglobus veneficus SNP6]
          Length = 259

 Score = 42.0 bits (97), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 104/246 (42%), Gaps = 19/246 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ ++ R I +   +   AEGS LVK G+T ++    ++   P +      G I  
Sbjct: 23  RIDGRKFDEFRHIEIETNIIAKAEGSALVKLGNTQVVVGVKMQPGEP-FPDAPDKGIIIT 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------II 113
              ++P ++          G     S E+ R++ R +R    VDL+ L   +      I 
Sbjct: 82  NAELVPLASPT-----FEPGPPDENSIELARVVDRGIRESEAVDLTKLCIEEGEKVWLIF 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHME--DCSNKFQLSQVLKGHVAAISCGMLCG 171
           ID   +  DG    A+   A  AL       E  D    F L   ++    +++  ++  
Sbjct: 137 IDIHALDDDGNLMDASSLAAIAALLTTTVPAERFDVGEDFPLP--VRDLPISVTSLIVNN 194

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             +VD    E S  +         + +IV +Q S      S++ F+ +++++ ++  ++ 
Sbjct: 195 RILVDPSRDEVSVGEYFMTITTDQADNIVAMQKSG-SYLLSEEKFYELIDISIEKAREIR 253

Query: 232 KLQKDV 237
           +L KDV
Sbjct: 254 ELLKDV 259


>gi|47569084|ref|ZP_00239773.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9241]
 gi|49478386|ref|YP_037868.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|52141682|ref|YP_085148.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus E33L]
 gi|118479027|ref|YP_896178.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
           str. Al Hakam]
 gi|165872621|ref|ZP_02217252.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0488]
 gi|167635853|ref|ZP_02394162.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0442]
 gi|167639866|ref|ZP_02398135.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0193]
 gi|170687834|ref|ZP_02879048.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0465]
 gi|177652128|ref|ZP_02934674.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0174]
 gi|190568447|ref|ZP_03021354.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis
           Tsiankovskii-I]
 gi|196042164|ref|ZP_03109447.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
           NVH0597-99]
 gi|196044582|ref|ZP_03111817.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB108]
 gi|227813285|ref|YP_002813294.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           CDC 684]
 gi|228928856|ref|ZP_04091888.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935122|ref|ZP_04097949.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228986950|ref|ZP_04147076.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229092848|ref|ZP_04223982.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-42]
 gi|229123320|ref|ZP_04252524.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 95/8201]
 gi|229157384|ref|ZP_04285462.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
           4342]
 gi|229186044|ref|ZP_04313214.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BGSC
           6E1]
 gi|254683486|ref|ZP_05147346.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           CNEVA-9066]
 gi|254735845|ref|ZP_05193551.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           Western North America USA6153]
 gi|254739629|ref|ZP_05197323.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           Kruger B]
 gi|254755998|ref|ZP_05208029.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           Vollum]
 gi|81395117|sp|Q6HF08|PNP_BACHK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81686592|sp|Q636L9|PNP_BACCZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470934|sp|A0RHH8|PNP_BACAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782704|sp|C3L7C0|PNP_BACAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|47554246|gb|EAL12608.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9241]
 gi|49329942|gb|AAT60588.1| polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|51975151|gb|AAU16701.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus E33L]
 gi|118418252|gb|ABK86671.1| polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           str. Al Hakam]
 gi|164711653|gb|EDR17199.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0488]
 gi|167512267|gb|EDR87644.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0193]
 gi|167528810|gb|EDR91568.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0442]
 gi|170668150|gb|EDT18899.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0465]
 gi|172082497|gb|EDT67562.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0174]
 gi|190560451|gb|EDV14429.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis
           Tsiankovskii-I]
 gi|196024617|gb|EDX63289.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB108]
 gi|196027016|gb|EDX65640.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
           NVH0597-99]
 gi|227006240|gb|ACP15983.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           CDC 684]
 gi|228597463|gb|EEK55113.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BGSC
           6E1]
 gi|228626111|gb|EEK82860.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
           4342]
 gi|228660096|gb|EEL15732.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 95/8201]
 gi|228690470|gb|EEL44253.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-42]
 gi|228772728|gb|EEM21168.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228824487|gb|EEM70292.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830663|gb|EEM76268.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT  ++     +N     
Sbjct: 3   QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|262340893|ref|YP_003283748.1| polyribonucleotide nucleotidyltransferase [Blattabacterium sp.
           (Blattella germanica) str. Bge]
 gi|262272230|gb|ACY40138.1| polyribonucleotide nucleotidyltransferase [Blattabacterium sp.
           (Blattella germanica) str. Bge]
          Length = 713

 Score = 42.0 bits (97), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 15/146 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP------MWIRNT 54
           +RL GR   Q+R I           GS L   G+T  LTT TL   +       + + N 
Sbjct: 324 IRLDGRTSKQIRPIWSVVDYLPGVHGSALFSRGETQSLTTVTLGSSLDANKIDNVVMENQ 383

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +  ++   Y   P STG       VS R+ G     Q    RAL++++  +    R +  
Sbjct: 384 EKFYL--HYNFPPFSTGEIRPIRGVSRREIGHGNLAQ----RALKNIIPNNPYTIRVV-- 435

Query: 115 DCDVIQADGGTRTAAITGAWVALHDC 140
             D+++++G +  A +  A +AL D 
Sbjct: 436 -SDILESNGSSSMATVCAASLALMDA 460


>gi|254722007|ref|ZP_05183796.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           A1055]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT  ++     +N     
Sbjct: 3   QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|228902310|ref|ZP_04066467.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           IBL 4222]
 gi|228857279|gb|EEN01782.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           IBL 4222]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT  ++     +N     
Sbjct: 3   QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|218904934|ref|YP_002452768.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH820]
 gi|226702597|sp|B7JJ84|PNP_BACC0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218539646|gb|ACK92044.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH820]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT  ++     +N     
Sbjct: 3   QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|119898394|ref|YP_933607.1| polynucleotide phosphorylase/polyadenylase [Azoarcus sp. BH72]
 gi|187470932|sp|A1K7B5|PNP_AZOSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|119670807|emb|CAL94720.1| polyribonucleotide nucleotidyltransferase [Azoarcus sp. BH72]
          Length = 699

 Score = 42.0 bits (97), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 27/175 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  ATL    +E++   I      
Sbjct: 316 RIDGRDTRTVRPIDIRVGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDAIAGEYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P STG        +GR G  + +EI   R+  RAL +++      S  I +
Sbjct: 376 RFMLHYNFPPFSTGE-------TGRFGVTKRREIGHGRLAKRALVAMLPKGEDFSYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ G  +AL D    M+D             HVA I+ G++
Sbjct: 429 VSEITESNGSSSMASVCGGSLALMDAGVPMKD-------------HVAGIAMGLI 470


>gi|302882007|ref|XP_003039914.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI
           77-13-4]
 gi|256720781|gb|EEU34201.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI
           77-13-4]
          Length = 268

 Score = 42.0 bits (97), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 24/195 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-------LEEKVPMWIRN 53
           +R+ GR+ N++R ++   R    A+GS  ++ G T ++   T        + +V    R+
Sbjct: 13  LRVDGRRWNELRRLNAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQGQQQRRVQTAQRD 72

Query: 54  TKH---GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110
                   +TA +     S+ +R KR    GR   R+QEI+  I  A  S +        
Sbjct: 73  VAAINVNVVTAGF-----SSVDRKKR----GRNDKRTQEIEVTIANAFASNLHTHLFPHS 123

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
            I I   V+  DG    A +    +AL D    M D      ++    G  +  + G   
Sbjct: 124 SITISLHVLSQDGSLLAALLNATTLALIDAGIPMTD-----YIAACTAGSTSTYAAGDDS 178

Query: 171 GYPIVDLDYGEDSTI 185
             P++DL+  E+  +
Sbjct: 179 ADPLLDLNNQEEQEL 193


>gi|228947527|ref|ZP_04109817.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228812047|gb|EEM58378.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT  ++     +N     
Sbjct: 3   QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|228960024|ref|ZP_04121688.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228799540|gb|EEM46493.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT  ++     +N     
Sbjct: 3   QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|52550027|gb|AAU83876.1| 3'-5' exoribonuclease [uncultured archaeon GZfos34H10]
          Length = 260

 Score = 42.0 bits (97), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 86/213 (40%), Gaps = 14/213 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR     R+I + R + K A+GS  V+ GDT +L    +E   P +      G +  
Sbjct: 23  RADGRGFLDFRDIIVERDLIKKADGSTRVQIGDTVVLVGVKVEPGEP-FSDTPNKGILMT 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              ++P ++      E  SG     S E+ R++ R +R    +DL  L    G +   + 
Sbjct: 82  NAELVPLAS-----PEFESGPPNENSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMLF 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID   +  DG    AA  GA  +L +     E      + +  ++    A++   + G  
Sbjct: 137 IDIHTLDNDGNLVDAAALGAITSLLNVAIPYEQYGLTGEDTLQIRDTPVAVTVVEIGGNL 196

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
           +VD +  E+S        +    G I  +Q S 
Sbjct: 197 LVDPNVYEESAATSKLTVISNADGSISGLQKSG 229


>gi|218898959|ref|YP_002447370.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9842]
 gi|228966752|ref|ZP_04127796.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|226702616|sp|B7IUG5|PNP_BACC2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218542651|gb|ACK95045.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9842]
 gi|228792851|gb|EEM40409.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT  ++     +N     
Sbjct: 3   QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|218232388|ref|YP_002368608.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus B4264]
 gi|226702617|sp|B7HDT0|PNP_BACC4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218160345|gb|ACK60337.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus B4264]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT  ++     +N     
Sbjct: 3   QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|317402106|gb|EFV82699.1| polyribonucleotide nucleotidyltransferase [Achromobacter
           xylosoxidans C54]
          Length = 718

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 31/207 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R IS+   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 320 RIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL  ++         I I
Sbjct: 380 RFMLHYNMPPFATGE-------TGRIGVPKRREIGHGRLAKRALIPLLPAPEDFQYTIRI 432

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             ++ +++G +  A++ G  +A+ D    ++D             HVA ++ G++     
Sbjct: 433 VSEITESNGSSSMASVCGGSLAMMDAGVPVKD-------------HVAGVAMGLILDGGK 479

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197
              + D+   ED   D+D     T++G
Sbjct: 480 FAVLTDILGDEDHLGDMDFKVAGTENG 506


>gi|228940895|ref|ZP_04103454.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973824|ref|ZP_04134400.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980413|ref|ZP_04140723.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           Bt407]
 gi|228779233|gb|EEM27490.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           Bt407]
 gi|228785849|gb|EEM33852.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818731|gb|EEM64797.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326941573|gb|AEA17469.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT  ++     +N     
Sbjct: 3   QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|206978199|ref|ZP_03239080.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
           H3081.97]
 gi|217961227|ref|YP_002339795.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus AH187]
 gi|222097252|ref|YP_002531309.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus Q1]
 gi|229140448|ref|ZP_04269003.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST26]
 gi|229197917|ref|ZP_04324633.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1293]
 gi|226702618|sp|B7HLE0|PNP_BACC7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782706|sp|B9IV96|PNP_BACCQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|206743616|gb|EDZ55042.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
           H3081.97]
 gi|217066515|gb|ACJ80765.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH187]
 gi|221241310|gb|ACM14020.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus Q1]
 gi|228585635|gb|EEK43737.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1293]
 gi|228643009|gb|EEK99285.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST26]
 gi|324327701|gb|ADY22961.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT  ++     +N     
Sbjct: 3   QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|42782895|ref|NP_980142.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus ATCC
           10987]
 gi|81409473|sp|Q732R5|PNP_BACC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|42738822|gb|AAS42750.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
           10987]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT  ++     +N     
Sbjct: 3   QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|319956216|ref|YP_004167479.1| polyribonucleotide nucleotidyltransferase [Nitratifractor
           salsuginis DSM 16511]
 gi|319418620|gb|ADV45730.1| polyribonucleotide nucleotidyltransferase [Nitratifractor
           salsuginis DSM 16511]
          Length = 729

 Score = 42.0 bits (97), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 12/143 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP------MWIRNT 54
           +R  GR+ +++R IS+   +     GSCL   G+T  L T TL E         +  R+ 
Sbjct: 345 VRPDGRKPDEVRPISIETNLLPSVHGSCLFTRGETQALATVTLGEGKEGQLYELLTERSP 404

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +       Y   P   G      A S R+ G       +  RAL  V+D     SR I +
Sbjct: 405 RTERFMVHYNFPPFCVGEARPIGAPSRRELGHGN----LAKRALEPVIDREL--SRTIRL 458

Query: 115 DCDVIQADGGTRTAAITGAWVAL 137
             ++++++G +  A +    +AL
Sbjct: 459 VSEILESNGSSSMATVCAGSLAL 481


>gi|186476768|ref|YP_001858238.1| polynucleotide phosphorylase/polyadenylase [Burkholderia phymatum
           STM815]
 gi|226702629|sp|B2JDN2|PNP_BURP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|184193227|gb|ACC71192.1| Polyribonucleotide nucleotidyltransferase [Burkholderia phymatum
           STM815]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL + +  +      I +
Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALAACLPSAEEFGYSIRV 434

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477


>gi|330817796|ref|YP_004361501.1| Polyribonucleotide nucleotidyltransferase [Burkholderia gladioli
           BSR3]
 gi|327370189|gb|AEA61545.1| Polyribonucleotide nucleotidyltransferase [Burkholderia gladioli
           BSR3]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 25/204 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRSGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREVGHG----RLAKRALVACLPSAEEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D    M             K HVA I+ G++        
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLILEGNKFAV 484

Query: 174 IVDLDYGEDSTIDVDANFVMTDSG 197
           + D+   ED   D+D     T++G
Sbjct: 485 LTDILGDEDHLGDMDFKVAGTEAG 508


>gi|325294385|ref|YP_004280899.1| polyribonucleotide nucleotidyltransferase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064833|gb|ADY72840.1| Polyribonucleotide nucleotidyltransferase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 101/232 (43%), Gaps = 40/232 (17%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRS 69
           T +++K A+G+ +V  GDT +L TA + ++        P+ +   +  +     G +P  
Sbjct: 19  TGKLAKQADGAVIVSQGDTMVLVTAVMSDEPREGIDFFPLLVEYRERAYAA---GKIP-- 73

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA- 128
            G  VKRE   G+         R+I R++R +         Q++    VI AD     A 
Sbjct: 74  -GGFVKRE---GKPTDEEVLKSRVIDRSIRPIFPKGFRNDVQVV--AFVISADQENDPAV 127

Query: 129 -AITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AI GA  ALH              +S++  +  V A+    + G  +V+  Y +    D
Sbjct: 128 LAINGASAALH--------------ISRIPFEKPVGAVRVVRVNGKLVVNPSYEQQQNAD 173

Query: 187 VDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +  N V++ +   +V V+G A+     ++     + LA + I   I+ Q+++
Sbjct: 174 I--NLVVSGTEDAVVMVEGGAKEV--PEEEILDAIELAHEEIKKSIRAQQEL 221



 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 69/180 (38%), Gaps = 33/180 (18%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR+ N++R I++   +     GS L   G T  L T TL    E ++   +   + 
Sbjct: 311 IRIDGRKPNEIRPITIEVGLLPRVHGSALFTRGQTQALVTTTLGTPEEYQLVEGLMPEEQ 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSR 110
                 Y   P   G     E    R  GR     R IG      RAL  V+        
Sbjct: 371 KRFMLHYNFPPFCVG-----EVAPLRGPGR-----REIGHGALAERALAPVIPEEDEFPY 420

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
            I +  D+++++G +  A + G  ++L D                 +K  VA I+ G++ 
Sbjct: 421 VIRVVSDILESNGSSSMATVCGGSLSLMDA-------------GVPIKAQVAGIAMGLIL 467


>gi|228909631|ref|ZP_04073454.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           IBL 200]
 gi|228849920|gb|EEM94751.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           IBL 200]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT  ++     +N     
Sbjct: 3   QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|206972738|ref|ZP_03233672.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1134]
 gi|206732338|gb|EDZ49526.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1134]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT  ++     +N     
Sbjct: 3   QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|257451721|ref|ZP_05617020.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium sp.
           3_1_5R]
          Length = 743

 Score = 42.0 bits (97), Expect = 0.076,   Method: Composition-based stats.
 Identities = 60/250 (24%), Positives = 95/250 (38%), Gaps = 38/250 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR   ++R +     V     GS L   G+T  L TATL    +E++   +    + 
Sbjct: 360 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKDDEQLVDNLEKEYYK 419

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G       +  RALR V+         I +  D
Sbjct: 420 KFYLHYNFPPYSVGETGRMGAPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSD 475

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  +AL                   +K HVA I+ G++        
Sbjct: 476 ITESNGSSSQASICGGSLAL-------------MSAGVPIKEHVAGIAMGLIKEGEEFTV 522

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHI-----VEVQGSAE---RATFSQDH-----FFAML 220
           + D+   ED   D+D     T SG       +++ G  E   R   +Q H        ++
Sbjct: 523 LTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHVARQQILEVM 582

Query: 221 NLAKDRIADL 230
           N A    ADL
Sbjct: 583 NTAISSPADL 592


>gi|167043480|gb|ABZ08177.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           microorganism HF4000_APKG2H5]
          Length = 264

 Score = 42.0 bits (97), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 102/250 (40%), Gaps = 26/250 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-T 60
           R SGR   + R+  L   V   AEGS  V+ GDT +     L+  VP   R  + G + +
Sbjct: 23  RHSGRGRWEARDTELEIGVLPRAEGSARVRMGDTIVYAGVKLQIMVPYPDRPNQGGLMCS 82

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSR--QI 112
           AE  + P +  N        G     S E+ R++ R +R    +D+  L    G +  Q+
Sbjct: 83  AE--VRPVAGPN-----WEPGPPSPESIELGRVVDRGIRESGCIDVDGLCLIPGEKAWQV 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS---QVLKGHVAAISCGM- 168
           I+D   I  DG    A       A+   +   E    +F++S   + L      I C   
Sbjct: 136 ILDLFAISDDGNLFDAFALAGIAAMRTAMIPEE----RFEISGEDRPLNISKTPIMCSYH 191

Query: 169 -LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
            + G  + D D  E+   D   +  + D GH+  +Q    R  F+   F  ++  A+ R 
Sbjct: 192 KVGGRFVYDADGREELGGDERIHITLGDDGHVHSLQ-KGLRGIFTASEFTEIMEHAQSRC 250

Query: 228 ADLIKLQKDV 237
            +L ++   V
Sbjct: 251 NELREMVSKV 260


>gi|103486036|ref|YP_615597.1| polynucleotide phosphorylase/polyadenylase [Sphingopyxis alaskensis
           RB2256]
 gi|123380103|sp|Q1GVQ8|PNP_SPHAL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|98976113|gb|ABF52264.1| 3' exoribonuclease [Sphingopyxis alaskensis RB2256]
          Length = 771

 Score = 42.0 bits (97), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 91/228 (39%), Gaps = 18/228 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR   Q+R I         A GS L   G+T  + T TL     E++   +    + 
Sbjct: 316 RIDGRTTTQIRPIVAETHFLPRAHGSALFTRGETQTIATCTLGTKDAEQMIDGLNGLSYQ 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  V R    GR   R     ++  RAL  V+         I +  D
Sbjct: 376 HFMLHYNFPPYSVGE-VGRFGAPGR---REVGHGKLAWRALHPVLPSKDEFPYTIRLTSD 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +A+ D    ++   +   +  +L+G   AI         + D+
Sbjct: 432 ITESNGSSSMASVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDYAI---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
              ED   D+D     T  G I  +Q   + A  +++ F A L  AK+
Sbjct: 483 LGDEDHLGDMDFKVAGTSEG-ITTMQMDIKIAGITREIFEAALAQAKE 529


>gi|257076445|ref|ZP_05570806.1| exosome complex RNA-binding protein Rrp42 [Ferroplasma acidarmanus
           fer1]
          Length = 260

 Score = 42.0 bits (97), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 14/130 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR     REI +T      A GS +V+ G T ++    +EE  P +  +   G +  
Sbjct: 26  RLDGRGLQDYREIKITENFVPKAAGSAMVEIGKTKVVAGIKVEEGDP-FEDSPDSGVMAL 84

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +LP +          SG    ++ E  R++ R +R   +VD S L    G R   I 
Sbjct: 85  NIELLPMAFPT-----FESGPPSEQAIEYSRVVDRGIRESKMVDTSKLVIESGKRVWMIF 139

Query: 114 IDCDVIQADG 123
           +D DV+  DG
Sbjct: 140 VDIDVLNYDG 149


>gi|229162743|ref|ZP_04290700.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus R309803]
 gi|228620625|gb|EEK77494.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus R309803]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 97/230 (42%), Gaps = 35/230 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T +++K A G+ LV++GDT +L+TAT  ++     +N     +T  Y       G +P  
Sbjct: 21  TSQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFPLTVNYEERLYAVGKIP-- 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  AA
Sbjct: 75  -GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMAA 130

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ +AL      + D           +G +A  + G + G  +++    +    D+  
Sbjct: 131 MLGSSLAL-----SISDIP--------FEGPIAGATVGRINGEFVINPTVEQQEQSDIHL 177

Query: 190 NFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
               T D+ ++VE    A      ++     +    D I  LI  Q++++
Sbjct: 178 VVAGTKDAINMVE----AGADQVPEETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|115522221|ref|YP_779132.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
           palustris BisA53]
 gi|122298071|sp|Q07V82|PNP_RHOP5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|115516168|gb|ABJ04152.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris BisA53]
          Length = 721

 Score = 42.0 bits (97), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 94/231 (40%), Gaps = 24/231 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R+I     V   A GS L   G+T  L   TL    +E+    +  T   
Sbjct: 316 RIDGRDSTTVRQIIAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDSLSGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G        +GR GG + +EI   ++  RAL  V+         + +
Sbjct: 376 QFLLHYNFPPFSVGE-------TGRMGGTKRREIGHGKLAWRALHPVLPPHHEFPYTLRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++ +++G +  A++ GA +AL D    ++  +    +  +L+G   A+   +L     
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLSDILG---- 484

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                 ED   D+D     TD G I  +Q   + A  +++     L  AK+
Sbjct: 485 -----DEDHLGDMDFKVAGTDHG-ITSLQMDIKIAGITEEIMKVALGQAKE 529


>gi|241954284|ref|XP_002419863.1| 3'-to-5' phosphorolytic exoribonuclease, putative; exosome complex
           exonuclease, putative; ribosomal RNA processing protein,
           putative [Candida dubliniensis CD36]
 gi|223643204|emb|CAX42078.1| 3'-to-5' phosphorolytic exoribonuclease, putative [Candida
           dubliniensis CD36]
          Length = 240

 Score = 42.0 bits (97), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 83/188 (44%), Gaps = 27/188 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKY---AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG 57
           +R+ GR+ N++R      R++ +   ++GS  V+ G+T ++   T++  +   +R+ +H 
Sbjct: 9   LRIDGRRWNELRRFEC--RINTHPNSSDGSSYVEQGNTKVM--CTVQGPIEPTLRSQQHS 64

Query: 58  W---ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
               I     +   ST  R KR     R   R  E++  + +     V ++      I+I
Sbjct: 65  ERANIEVNLNIASFSTFERKKR----SRNERRLVELKTTLEKTFEESVMINLYPRTNIVI 120

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
           +  V+  DGG     I    +AL D    M D             +V+ +SCG+    P+
Sbjct: 121 NVQVLCQDGGMLATIINSITLALIDAGISMYD-------------YVSGVSCGLYDQTPL 167

Query: 175 VDLDYGED 182
           +D++  E+
Sbjct: 168 LDVNNLEE 175


>gi|296448311|ref|ZP_06890203.1| polyribonucleotide nucleotidyltransferase [Methylosinus
           trichosporium OB3b]
 gi|296254188|gb|EFH01323.1| polyribonucleotide nucleotidyltransferase [Methylosinus
           trichosporium OB3b]
          Length = 714

 Score = 42.0 bits (97), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 16/177 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR    +R I     V   A GS L   G+T  L  ATL    +E+    +  T  
Sbjct: 315 VRIDGRDVKTVRPIVAEVGVLPRAHGSALFTRGETQALVVATLGTGEDEQFVDSLEGTYK 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQG--GRSQEI--QRMIGRALRSVVDLSALGSRQI 112
                 Y   P S G        +GR G  GR +EI   ++  RA+R ++  +A     I
Sbjct: 375 ERFLLHYNFPPYSVGE-------TGRMGSPGR-REIGHGKLAWRAIRPMLPAAAEFPYTI 426

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            +  ++ +++G +  A + G+ +AL D    ++  +    +  +L+G   A+   +L
Sbjct: 427 RVVSEITESNGSSSMATVCGSSLALMDAGVPLKKPTAGIAMGLILEGERFAVLSDIL 483


>gi|254172923|ref|ZP_04879597.1| exosome complex exonuclease RRP43 [Thermococcus sp. AM4]
 gi|214033079|gb|EEB73907.1| exosome complex exonuclease RRP43 [Thermococcus sp. AM4]
          Length = 273

 Score = 42.0 bits (97), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 99/248 (39%), Gaps = 23/248 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   + R+I +     + AEGS  V+ G T +L    ++   P +      G +T 
Sbjct: 24  RIDGRSFEEYRDIEIKTGFIEKAEGSAWVRLGGTRVLVGIKVDVGEP-FPDLPDRGVMTT 82

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALG------SRQII 113
              ++P ++          G    R+ E+ R+I R +R    V+L  L        R + 
Sbjct: 83  NVELVPLASPT-----FEPGPPDERAIELARVIDRGIRESQAVELEKLVIVPGKLVRVVF 137

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQLSQVLKGHVAAISCGM- 168
           ID  V+  DG    A    A  AL       +++ E+     +L +     V  I   + 
Sbjct: 138 IDVHVLDHDGNLFDATGLAAMAALLTTRVPKVEYNEETGEIVKLDEYEPLPVRRIPLPVT 197

Query: 169 ---LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
              +    IVD +  E++ +D        ++GHI  VQ   E  +F  +     ++ A  
Sbjct: 198 FAKIGSSIIVDPNLDEETVMDSRITITTDETGHISAVQ-KGEGGSFKLEEVMYAIDTALK 256

Query: 226 RIADLIKL 233
           +  +L K+
Sbjct: 257 KADELRKI 264


>gi|30263811|ref|NP_846188.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           Ames]
 gi|47529234|ref|YP_020583.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49186657|ref|YP_029909.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           Sterne]
 gi|65321134|ref|ZP_00394093.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Bacillus anthracis str. A2012]
 gi|170706809|ref|ZP_02897267.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0389]
 gi|229603609|ref|YP_002868046.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0248]
 gi|254759341|ref|ZP_05211366.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           Australia 94]
 gi|81583685|sp|Q81WM8|PNP_BACAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782703|sp|C3P5L0|PNP_BACAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|30258455|gb|AAP27674.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           Ames]
 gi|47504382|gb|AAT33058.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49180584|gb|AAT55960.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           Sterne]
 gi|170128227|gb|EDS97096.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0389]
 gi|229268017|gb|ACQ49654.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0248]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT  ++     +N     
Sbjct: 3   QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVNIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|332226543|ref|XP_003262449.1| PREDICTED: LOW QUALITY PROTEIN: polyribonucleotide
           nucleotidyltransferase 1, mitochondrial-like [Nomascus
           leucogenys]
          Length = 778

 Score = 42.0 bits (97), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 39/210 (18%)

Query: 9   NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAE 62
           N+  EIS + +++++A+GS +V+ GDT ++ TA  + K      +P+ +   +     A 
Sbjct: 53  NRKLEIS-SGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AA 108

Query: 63  YGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            G +P    N ++RE      G   +EI   R+I R++R +         Q++  C+++ 
Sbjct: 109 AGRIPT---NYLRREI-----GTSDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLA 158

Query: 121 ADGGTRT--AAITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDL 177
            DG       AI GA VAL               LS +   G V A+  G++ G  +V+ 
Sbjct: 159 VDGVNEPDVLAINGASVAL--------------SLSDIPWNGPVGAVRIGIIDGECVVNP 204

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207
              E S+  ++          IV ++ SAE
Sbjct: 205 TRKEMSSSTLNLVVAGAPKSQIVMLEASAE 234


>gi|30021896|ref|NP_833527.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus ATCC
           14579]
 gi|81433861|sp|Q819Z1|PNP_BACCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|29897452|gb|AAP10728.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
           14579]
          Length = 712

 Score = 42.0 bits (97), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT  ++     +N     
Sbjct: 3   QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEA----KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|327399809|ref|YP_004340678.1| polyribonucleotide nucleotidyltransferase [Hippea maritima DSM
           10411]
 gi|327182438|gb|AEA34619.1| Polyribonucleotide nucleotidyltransferase [Hippea maritima DSM
           10411]
          Length = 703

 Score = 41.6 bits (96), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 10/145 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGW 58
           +R+ GR  +++R I+    V   A GS +   G+T  L   TL  +    I +  ++ G+
Sbjct: 314 VRIDGRGLDEIRPITCEVGVLPRAHGSAVFTRGETQALVATTLGSREDAQIIDDVSEEGY 373

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                 Y  LP STG  VKR    GR+  G     +R I   L S  D        I + 
Sbjct: 374 ERFMLHYNFLPFSTG-EVKRLGPPGRREIGHGNLAKRAIEPMLPSEDDF----PYAIRVV 428

Query: 116 CDVIQADGGTRTAAITGAWVALHDC 140
            D+++++G +  A + G+ ++L D 
Sbjct: 429 SDILESNGSSSMATVCGSTLSLMDA 453



 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 94/228 (41%), Gaps = 37/228 (16%)

Query: 21  SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGNR 73
           +K A+G+C+++ GDT +L TA   ++ P    +     +T  Y       G +P   G  
Sbjct: 21  AKQADGACVIRMGDTMVLATAVSSKEPPKEFLD--FLPLTVNYQERFYAAGKIP---GGF 75

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
           VKRE   G+       + R+I R++R +         Q+II    I AD     A I+  
Sbjct: 76  VKRE---GKPTVHETLVSRLIDRSIRPLFPKDYKQEIQVIITT--ISADQENDPAIISIL 130

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
             +   CL  +        L  V    V+    G+     + ++D       D   N ++
Sbjct: 131 AASCSLCLSDIP------FLGPVAGVRVSRFENGLKAFASLKEID-------DSRLNLIL 177

Query: 194 T---DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
               D+ +++E  G+ E    S+D     +   KD I  L+  Q+++I
Sbjct: 178 AGTKDAINMIEA-GAGE---LSEDEMVDAIMFGKDNIDILLDAQEEII 221


>gi|314933453|ref|ZP_07840818.1| polyribonucleotide nucleotidyltransferase [Staphylococcus caprae
           C87]
 gi|313653603|gb|EFS17360.1| polyribonucleotide nucleotidyltransferase [Staphylococcus caprae
           C87]
          Length = 699

 Score = 41.6 bits (96), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 99/232 (42%), Gaps = 35/232 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T +++K A G+ LV++GDT +L+TAT   K P   R+     +T  Y       G +P  
Sbjct: 21  TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   KRE   GR G  +    R+I R +R +         QI+       +D     AA
Sbjct: 75  -GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADSDCSPEMAA 130

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ +AL      + D           +G +A ++ G + G  +++    E     +D 
Sbjct: 131 MIGSSMAL-----SVSDIP--------FQGPIAGVNVGYVDGNYVINPSVAEKEVSRLDL 177

Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 D+ ++VE  G++E    ++      +    + I  L+  Q+++I +
Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITESEMLEAIFFGHEEIKRLVAFQQEIIDH 225


>gi|290968451|ref|ZP_06559990.1| polyribonucleotide nucleotidyltransferase [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781447|gb|EFD94036.1| polyribonucleotide nucleotidyltransferase [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 716

 Score = 41.6 bits (96), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 82/195 (42%), Gaps = 26/195 (13%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74
           +++K A G+ LV++GDT +  TAT      E    +     +       G +P   G  +
Sbjct: 21  KLAKQASGAALVRYGDTAVFVTATGAKEAREDADFFPLTVDYEEKMYSVGKIP---GGFI 77

Query: 75  KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
           KRE   G+    +    R+I R +R +   +      ++     +  D     AA+ GA 
Sbjct: 78  KRE---GKPPESATLFARLIDRPIRPLFPKTYRHEVHVVAYDFCVDHDNAPEIAAMIGAS 134

Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT 194
           V+L  C+ H+              G +A +  G + G  +++    +    D+D  FV+ 
Sbjct: 135 VSL--CMSHIP-----------FAGPIAGVRVGRVDGQFVINPTVVQSEKSDMD--FVVA 179

Query: 195 DSGH-IVEVQGSAER 208
            +   I+ V+G AE+
Sbjct: 180 GTKDAILMVEGGAEQ 194


>gi|110597075|ref|ZP_01385364.1| Polyribonucleotide nucleotidyltransferase [Chlorobium ferrooxidans
           DSM 13031]
 gi|110341266|gb|EAT59731.1| Polyribonucleotide nucleotidyltransferase [Chlorobium ferrooxidans
           DSM 13031]
          Length = 731

 Score = 41.6 bits (96), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 8/142 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           RL GR   ++R IS+   +   A GS L   G+T  L T TL  K        + N+   
Sbjct: 332 RLDGRTLEEVRPISIELGIIPRAHGSALFTRGETQALVTITLGTKKDAQSVDNLTNSADK 391

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RA++ V          I I  D
Sbjct: 392 KFMLHYNFPPFSVGETGRIGSTGRREIGHGN----LAERAIKMVAPTEQEFPYTIRIVSD 447

Query: 118 VIQADGGTRTAAITGAWVALHD 139
           +++++G +  A++ G  +AL D
Sbjct: 448 ILESNGSSSMASVCGGTLALMD 469


>gi|146297069|ref|YP_001180840.1| polynucleotide phosphorylase/polyadenylase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|187470950|sp|A4XL64|PNP_CALS8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145410645|gb|ABP67649.1| Polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 701

 Score = 41.6 bits (96), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 33/179 (18%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R  GR+ +++R +     +     GS L K G T +LT ATL  K  M     +   +  
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111
                Y   P STG     E+   R  GR     R IG      RAL  V+         
Sbjct: 373 RYMHHYNFPPYSTG-----ESKPVRGPGR-----REIGHGALAERALEPVIPSEDEFPYT 422

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           I +  +V+ ++G T  A++ G+ +AL D                 +K  VA IS G++ 
Sbjct: 423 IRLVSEVLTSNGSTSQASVCGSTLALMDA-------------GVPIKAPVAGISIGLIT 468


>gi|313888270|ref|ZP_07821941.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845673|gb|EFR33063.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 703

 Score = 41.6 bits (96), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 16/126 (12%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRSTG 71
           +V++ A G+CLV++GDT +L TAT   K        P+ +   +  +     G +P   G
Sbjct: 20  KVAEQANGACLVQYGDTVVLVTATSSSKPREGIDFFPLSVDYEEKMYAV---GKIP---G 73

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
             +KRE   GR   ++    R+I R LR +          I+     +  D      A+ 
Sbjct: 74  GFIKRE---GRPSEKATLSARLIDRPLRPLFPEGYRNDVHIVATVLSVDQDHSPEIVAMI 130

Query: 132 GAWVAL 137
           G+ +AL
Sbjct: 131 GSSIAL 136


>gi|238028147|ref|YP_002912378.1| polynucleotide phosphorylase/polyadenylase [Burkholderia glumae
           BGR1]
 gi|237877341|gb|ACR29674.1| Polyribonucleotide nucleotidyltransferase [Burkholderia glumae
           BGR1]
          Length = 709

 Score = 41.6 bits (96), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 85/207 (41%), Gaps = 31/207 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL + +  +      I +
Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRV 434

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             ++ +++G +  A++ G  +AL D    M             K HVA I+ G++     
Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLILEDNK 481

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197
              + D+   ED   D+D     T++G
Sbjct: 482 FAVLTDILGDEDHLGDMDFKVAGTEAG 508


>gi|300794376|ref|NP_001179126.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Bos
           taurus]
 gi|297480320|ref|XP_002691377.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1 [Bos taurus]
 gi|296482678|gb|DAA24793.1| polyribonucleotide nucleotidyltransferase 1 [Bos taurus]
          Length = 783

 Score = 41.6 bits (96), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 46/204 (22%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++++A+GS +V+ GDT ++ TA  + K      +P+ +   +     A  G +P    N
Sbjct: 62  KLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AAAGRIPT---N 115

Query: 73  RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128
            ++RE      G   +EI   R+I R++R +         QI+  C+++  DG       
Sbjct: 116 YLRREI-----GSSDKEILTSRVIDRSIRPLFPAGYFYDTQIL--CNLLAVDGVNEPDVL 168

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGE--DSTI 185
           AI GA VAL               LS +   G + A+  GM+ G  +V+    E  +ST+
Sbjct: 169 AINGASVAL--------------SLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMANSTL 214

Query: 186 DVDANFVMT--DSGHIVEVQGSAE 207
               N V+T      IV ++ SAE
Sbjct: 215 ----NLVVTGAPKSQIVMLEASAE 234


>gi|315640904|ref|ZP_07896000.1| ribonuclease PH/Ham1 protein [Enterococcus italicus DSM 15952]
 gi|315483322|gb|EFU73822.1| ribonuclease PH/Ham1 protein [Enterococcus italicus DSM 15952]
          Length = 432

 Score = 41.6 bits (96), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 23/206 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR E   R+  +     KYA GS  +  GDT +     L         +++ G+  
Sbjct: 1   MRYDGRYEKSKRQTKIETNNRKYALGSATIHQGDTIVSCAVNL--------SDSQDGYQL 52

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
               ++     N    + ++ +Q  +S E+   + + L  V+  + LG +++ I+  V Q
Sbjct: 53  KLVQLIAPMANN----QELTKKQ--KSSEL--FLEQLLNGVLSDTNLGGKKLHIEVVVEQ 104

Query: 121 ADGGTRTAAITGAWVALH---DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
            DG     A    ++AL    D L    + SN    S + +G  A     +    P++D 
Sbjct: 105 DDGSFLAVAANAMYLALQQACDTLTRRNNQSN----SGISQGFAAIQVAFITPEIPLIDP 160

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQ 203
           D  E+    V+A   + ++G  + VQ
Sbjct: 161 DRHEELQALVEATVCVNEAGEFLAVQ 186


>gi|229086359|ref|ZP_04218536.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-44]
 gi|228696971|gb|EEL49779.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-44]
          Length = 717

 Score = 41.6 bits (96), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT   K P   +N     
Sbjct: 3   QEKQVFSIDLAGRQLTIETGQLAKQANGAVLVRYGDTAVLSTATA-SKEP---KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|85542918|sp|Q5RCW2|PNPT1_PONAB RecName: Full=Polyribonucleotide nucleotidyltransferase 1,
           mitochondrial; AltName: Full=Polynucleotide
           phosphorylase 1; Short=PNPase 1; Flags: Precursor
          Length = 783

 Score = 41.6 bits (96), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 39/210 (18%)

Query: 9   NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAE 62
           N+  EIS + +++++A+GS +V+ GDT ++ TA  + K      +P+ +   +     A 
Sbjct: 53  NRKLEIS-SGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AA 108

Query: 63  YGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            G +P    N ++RE      G   +EI   R+I R++R +         Q++  C+++ 
Sbjct: 109 AGRIPT---NYLRREI-----GTSDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLA 158

Query: 121 ADGGTRT--AAITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDL 177
            DG       AI GA VAL               LS +   G V A+  G++ G  +V+ 
Sbjct: 159 VDGVNEPDVLAINGASVAL--------------SLSDIPWNGPVGAVRIGIIDGECVVNP 204

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207
              E S+  ++          IV ++ SAE
Sbjct: 205 TRKEMSSSTLNLVVAGAPKSQIVMLEASAE 234


>gi|332285140|ref|YP_004417051.1| polyribonucleotide nucleotidyltransferase [Pusillimonas sp. T7-7]
 gi|330429093|gb|AEC20427.1| polyribonucleotide nucleotidyltransferase [Pusillimonas sp. T7-7]
          Length = 715

 Score = 41.6 bits (96), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 27/175 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R IS++  V   A GS L   G+T  L  ATL    +E++   I      
Sbjct: 320 RIDGRDTRTVRPISVSLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDSIMGEHRD 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P +TG        +GR G  + +EI   R+  RAL S +  +      I I
Sbjct: 380 RFMLHYNFPPFATGE-------TGRFGSPKRREIGHGRLAKRALVSSLPEAQDFQYTIRI 432

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ G  +A+ D    ++D             HVA ++ G++
Sbjct: 433 VSEITESNGSSSMASVCGGSLAMMDAGVPVKD-------------HVAGVAMGLI 474


>gi|258596889|ref|XP_001349602.2| 3' exoribonuclease, putative [Plasmodium falciparum 3D7]
 gi|254688464|gb|AAC71872.3| 3' exoribonuclease, putative [Plasmodium falciparum 3D7]
          Length = 275

 Score = 41.6 bits (96), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 11/146 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R++ R+ N++R++ +     +    SC    G+T +LTT        ++  N    + T 
Sbjct: 32  RINNRKNNEIRDMFIKLGEDENFGSSCFYSLGNTKILTT--------VYGPNPDSKYATY 83

Query: 62  EYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             G +     +  +     S RQ  R  +I+ ++   + +++ L       I I C +IQ
Sbjct: 84  SKGKVFLDVKSLNINTIGASDRQ--RDDDIKSLLIECISNIILLEKYPQCSIKIKCLIIQ 141

Query: 121 ADGGTRTAAITGAWVALHDCLQHMED 146
            DGG  +A +T   +AL      M+D
Sbjct: 142 DDGGCLSATLTCISLALIKAQIQMKD 167


>gi|228992535|ref|ZP_04152462.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides
           DSM 12442]
 gi|228998583|ref|ZP_04158170.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
           Rock3-17]
 gi|229006082|ref|ZP_04163770.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
           Rock1-4]
 gi|228755158|gb|EEM04515.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
           Rock1-4]
 gi|228761051|gb|EEM10010.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
           Rock3-17]
 gi|228767169|gb|EEM15805.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides
           DSM 12442]
          Length = 717

 Score = 41.6 bits (96), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT   K P   +N     
Sbjct: 3   QEKQVFSIDLAGRQLTIETGQLAKQANGAVLVRYGDTAVLSTATA-SKEP---KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|319892292|ref|YP_004149167.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161988|gb|ADV05531.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 697

 Score = 41.6 bits (96), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 103/243 (42%), Gaps = 44/243 (18%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T +++K A G+ LV++GDT +L+TAT   K P   R+     +T  Y       G +P  
Sbjct: 21  TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG--TRT 127
            G   KRE   GR G  +    R+I R +R +         QII    V+ AD       
Sbjct: 75  -GGFKKRE---GRPGDEATLTARLIDRPIRPLFPDGYRHDVQII--NTVLSADPNCSPEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV--DLDYGEDSTI 185
           AA+ G+ +AL      + D           +G +A ++ G + G  ++  +L+  E S +
Sbjct: 129 AAMIGSSMAL-----SVSDIP--------FQGPIAGVNVGYVDGEYVINPNLEQREKSRL 175

Query: 186 DVD-------ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D++        N V   +  I E +   E   F  +    +    ++ IA L   +++ I
Sbjct: 176 DLEVAGHKDAVNMVEAGASEITEAE-MLEAILFGHEEIKRLCAFQEEIIAHLQPEKREFI 234

Query: 239 SNE 241
             E
Sbjct: 235 PEE 237



 Score = 38.9 bits (89), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 27/206 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +   A GS L   G T  L+  TL    E ++   +   +H
Sbjct: 318 IRPDGRKPDEIRPLSSEVGLLPRAHGSGLFTRGQTQALSVLTLGSISEYQIIDGLGEEEH 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG-RALRSVVDLSALGSRQIIID 115
                 Y     S G     E    R  GR +     +G RALR ++         + I 
Sbjct: 378 KRFMHHYNFPNFSVG-----ETGPVRAPGRREIGHGALGERALRYIIPDEKTFPYTVRIV 432

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GY 172
            +V++++G +  A+I G+ +AL D                 +K  VA I+ G++     Y
Sbjct: 433 SEVLESNGSSSQASICGSTLALMDA-------------GVPIKAPVAGIAMGLVTREESY 479

Query: 173 PIV-DLDYGEDSTIDVDANFVMTDSG 197
            I+ D+   ED+  D+D     T  G
Sbjct: 480 TILTDIQGMEDALGDMDFKVAGTTEG 505


>gi|304314829|ref|YP_003849976.1| exosome RNA binding protein [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588288|gb|ADL58663.1| predicted exosome RNA binding protein [Methanothermobacter
           marburgensis str. Marburg]
          Length = 267

 Score = 41.6 bits (96), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 14/130 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  ++ R+IS+   V   AEGS  VK G+T ++     +   P +    + G I  
Sbjct: 21  RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEP-FPDTPEMGVILT 79

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSR--QII 113
              +LP ++          G    RS E+ R++ R +R   ++DL  L    GS+   + 
Sbjct: 80  NSELLPMASPT-----FEPGPPDERSVELSRVVDRCVRESQMIDLEKLCIIEGSKVWMLF 134

Query: 114 IDCDVIQADG 123
           +D  +I  DG
Sbjct: 135 LDLHIIDYDG 144


>gi|148270567|ref|YP_001245027.1| polynucleotide phosphorylase/polyadenylase [Thermotoga petrophila
           RKU-1]
 gi|187611330|sp|A5IMM8|PNP_THEP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|147736111|gb|ABQ47451.1| Polyribonucleotide nucleotidyltransferase [Thermotoga petrophila
           RKU-1]
          Length = 708

 Score = 41.6 bits (96), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 95/230 (41%), Gaps = 34/230 (14%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRSTG 71
           +V+K + GS LV+FGDT +L TA + +K       VP+ +   +  +     G +P   G
Sbjct: 19  KVAKQSSGSALVRFGDTVVLATANISDKAVEGIDFVPLTVEFQERFYAA---GKIP---G 72

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
             +KRE   G+    +    R+I R +R +         Q+I+    +  +       I 
Sbjct: 73  GFIKRE---GKPSESAILSARLIDRPIRPLFPKKLRNEVQVIVTVLSVDPNVPPDVVGIF 129

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            A +AL+              +S++  +G VA I  G   G   + L   ED    +   
Sbjct: 130 AASLALN--------------VSKIPFEGIVAGIRVGYRDGQ-FIALPSEEDIEKGLMDI 174

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            V      +  V+G A+    +++     L  A   I +L+  Q++++S 
Sbjct: 175 TVAGTKDAVTMVEGEAKEV--AEEDMVKALRFAHSVIKELVDFQEEILSE 222


>gi|237747627|ref|ZP_04578107.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
           OXCC13]
 gi|229378989|gb|EEO29080.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
           OXCC13]
          Length = 713

 Score = 41.6 bits (96), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 29/176 (16%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R I++   V     GS L   G+T  L  ATL      +K+   +     
Sbjct: 320 RIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTSRDNQKIDALMGEYSD 379

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQII 113
            ++   Y M P +TG        +GR G  + +EI   R+  RAL + +      S  I 
Sbjct: 380 AFMM-HYNMPPFATGE-------TGRVGTPKRREIGHGRLAKRALIACLPSQEEFSYSIR 431

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           +  ++++++G +  A++ G  +AL D                 +K HVA I+ G++
Sbjct: 432 LVSEIMESNGSSSMASVCGGSLALMDA-------------GVPVKNHVAGIAMGLI 474


>gi|221211731|ref|ZP_03584710.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD1]
 gi|221169092|gb|EEE01560.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD1]
          Length = 713

 Score = 41.6 bits (96), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 320 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL + +  +      I +
Sbjct: 380 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSAEEFGYSIRV 432

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 433 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 475


>gi|313887414|ref|ZP_07821103.1| polyribonucleotide nucleotidyltransferase [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332299600|ref|YP_004441521.1| Polyribonucleotide nucleotidyltransferase [Porphyromonas
           asaccharolytica DSM 20707]
 gi|312923056|gb|EFR33876.1| polyribonucleotide nucleotidyltransferase [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332176663|gb|AEE12353.1| Polyribonucleotide nucleotidyltransferase [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 736

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 10/148 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           RL GR+ N++R I +         GS +   G+T  L+T TL    +EK+   + N    
Sbjct: 318 RLDGRRTNEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKLVDDVLNYGKE 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG       +S R+ G      R + R +    D   +    I +  D
Sbjct: 378 RFLLHYNFPPFSTGEAKASRGISRREIGHGNLAHRALKRMIPE--DYPYV----IRVMSD 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHME 145
           +++++G +  A +    +AL D    M+
Sbjct: 432 ILESNGSSSMATVCAGTLALRDAGVQMK 459


>gi|46135695|ref|XP_389539.1| hypothetical protein FG09363.1 [Gibberella zeae PH-1]
          Length = 238

 Score = 41.6 bits (96), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 13/186 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH---- 56
           +R+ GR+ N++R +    R    A+GS  ++ G T ++   T   +        +     
Sbjct: 13  LRVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQQQRRGGQQAGRDM 72

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
             I     +   S+ +R KR    GR   R QEI+  I  AL S +      +  I I  
Sbjct: 73  AAINVNVVVAGFSSVDRKKR----GRNDKRIQEIETTIANALSSNLHTHLFPNSSISISL 128

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
            V+  DG    A I    +AL D    M D      ++    G  +  + G     P++D
Sbjct: 129 HVLSQDGSLLAALINATTLALIDAGIPMSD-----YIAACTAGSTSTYAAGDDNADPLLD 183

Query: 177 LDYGED 182
           L+  E+
Sbjct: 184 LNNQEE 189


>gi|323464611|gb|ADX76764.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           pseudintermedius ED99]
          Length = 697

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 103/243 (42%), Gaps = 44/243 (18%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T +++K A G+ LV++GDT +L+TAT   K P   R+     +T  Y       G +P  
Sbjct: 21  TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG--TRT 127
            G   KRE   GR G  +    R+I R +R +         QII    V+ AD       
Sbjct: 75  -GGFKKRE---GRPGDEATLTARLIDRPIRPLFPDGYRHDVQII--NTVLSADPNCSPEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV--DLDYGEDSTI 185
           AA+ G+ +AL      + D           +G +A ++ G + G  ++  +L+  E S +
Sbjct: 129 AAMIGSSMAL-----SVSDIP--------FQGPIAGVNVGYVDGEYVINPNLEQREKSRL 175

Query: 186 DVD-------ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D++        N V   +  I E +   E   F  +    +    ++ IA L   +++ I
Sbjct: 176 DLEVAGHKDAVNMVEAGASEITEAE-MLEAILFGHEEIKRLCAFQEEIIAHLQPEKREFI 234

Query: 239 SNE 241
             E
Sbjct: 235 PEE 237



 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 27/206 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +   A GS L   G T  L+  TL    E ++   +   +H
Sbjct: 318 IRPDGRKPDEIRPLSSEVGLLPRAHGSGLFTRGQTQALSVLTLGSISEYQIIDGLGEEEH 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG-RALRSVVDLSALGSRQIIID 115
                 Y     S G     E    R  GR +     +G RAL+ ++         + I 
Sbjct: 378 KRFMHHYNFPNFSVG-----ETGPVRAPGRREIGHGALGERALKYIIPDEKTFPYTVRIV 432

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GY 172
            +V++++G +  A+I G+ +AL D                 +K  VA I+ G++     Y
Sbjct: 433 SEVLESNGSSSQASICGSTLALMDA-------------GVPIKAPVAGIAMGLVTREESY 479

Query: 173 PIV-DLDYGEDSTIDVDANFVMTDSG 197
            I+ D+   ED+  D+D     T  G
Sbjct: 480 TILTDIQGMEDALGDMDFKVAGTTEG 505


>gi|332827644|gb|EGK00386.1| polyribonucleotide nucleotidyltransferase [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 720

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 10/143 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           RL GR   ++R I         A GS +   G+T  LTT T    L+EK+   + N    
Sbjct: 318 RLDGRSTTEIRPIWSEVDYLPGAHGSAIFTRGETQSLTTVTLGTKLDEKIIDDVLNNGKE 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG+   +  V  R+ G       +  RAL+ ++   A     I +  D
Sbjct: 378 RFLLHYNFPPFSTGDARPQRGVGRREIGHGN----LAHRALKPMI--PANYPYVIRVVSD 431

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           +++++G +  A +    +AL D 
Sbjct: 432 ILESNGSSSMATVCAGTLALMDA 454


>gi|161524200|ref|YP_001579212.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           multivorans ATCC 17616]
 gi|189351043|ref|YP_001946671.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           multivorans ATCC 17616]
 gi|226702628|sp|A9AJP0|PNP_BURM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|160341629|gb|ABX14715.1| Polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           ATCC 17616]
 gi|189335065|dbj|BAG44135.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           ATCC 17616]
          Length = 715

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL + +  +      I +
Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSAEEFGYSIRV 434

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477


>gi|253995588|ref|YP_003047652.1| polynucleotide phosphorylase/polyadenylase [Methylotenera mobilis
           JLW8]
 gi|253982267|gb|ACT47125.1| 3' exoribonuclease [Methylotenera mobilis JLW8]
          Length = 709

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 27/175 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R IS+   V     GS L   G+T  L  ATL    +E++   ++     
Sbjct: 316 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDALQGEYAD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL + +         + +
Sbjct: 376 RFMLHYNMPPYATGE-------TGRVGTPKRREIGHGRLAKRALVAALPAKEDFDYTMRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ G  +AL D    M             K HVA I+ G++
Sbjct: 429 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KNHVAGIAMGLI 470


>gi|221199652|ref|ZP_03572696.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD2M]
 gi|221205448|ref|ZP_03578463.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD2]
 gi|221174286|gb|EEE06718.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD2]
 gi|221180937|gb|EEE13340.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD2M]
          Length = 715

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL + +  +      I +
Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSAEEFGYSIRV 434

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477


>gi|320527320|ref|ZP_08028505.1| polyribonucleotide nucleotidyltransferase [Solobacterium moorei
           F0204]
 gi|320132344|gb|EFW24889.1| polyribonucleotide nucleotidyltransferase [Solobacterium moorei
           F0204]
          Length = 752

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 100/231 (43%), Gaps = 41/231 (17%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72
           ++K A GS ++++ DT +L+TAT   +     ++T    +T  Y       G +P   G 
Sbjct: 34  IAKQAGGSVVIRYADTTVLSTATANNQA----KDTDFFPLTVLYQEKMYAAGKIP---GG 86

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI---IIDCDVIQADGGTRTAA 129
             +RE   GR    +    R+I R +R +         QI   ++ CD    D  +  A+
Sbjct: 87  FTRRE---GRPTEHATLTARLIDRPIRPLFAEGFRNEVQIVNTVLSCD---PDASSEMAS 140

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ +AL  C+  +              G VA +    + G  I++    ++   D++ 
Sbjct: 141 LFGSSLAL--CISDIP-----------FNGPVAGVMVARVDGEYIINPSVEQEKNSDLNV 187

Query: 190 NFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
               T +  ++VE  G+ E    S++     L +  D I +L  +Q++VI+
Sbjct: 188 TVAGTKNAINMVEA-GAKE---VSEEDMLKALMIGHDAIKELCAIQEEVIA 234


>gi|312793244|ref|YP_004026167.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180384|gb|ADQ40554.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 701

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 33/179 (18%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R  GR+ +++R +     +     GS L K G T +LT ATL  K  M     +   +  
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111
                Y   P STG     E+   R  GR     R IG      RAL  V+         
Sbjct: 373 RYMHHYNFPPFSTG-----ESKPVRGPGR-----REIGHGALAERALEPVIPSEDEFPYT 422

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           I +  +V+ ++G T  A++ G+ +AL D                 +K  VA IS G++ 
Sbjct: 423 IRLVSEVLTSNGSTSQASVCGSTLALMDA-------------GVPIKAPVAGISIGLIT 468


>gi|312876944|ref|ZP_07736919.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796259|gb|EFR12613.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 701

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 33/179 (18%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R  GR+ +++R +     +     GS L K G T +LT ATL  K  M     +   +  
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111
                Y   P STG     E+   R  GR     R IG      RAL  V+         
Sbjct: 373 RYMHHYNFPPFSTG-----ESKPVRGPGR-----REIGHGALAERALEPVIPSEDEFPYT 422

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           I +  +V+ ++G T  A++ G+ +AL D                 +K  VA IS G++ 
Sbjct: 423 IRLVSEVLTSNGSTSQASVCGSTLALMDA-------------GVPIKAPVAGISIGLIT 468


>gi|254251858|ref|ZP_04945176.1| Polyribonucleotide nucleotidyltransferase [Burkholderia dolosa
           AUO158]
 gi|124894467|gb|EAY68347.1| Polyribonucleotide nucleotidyltransferase [Burkholderia dolosa
           AUO158]
          Length = 722

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 31/207 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 330 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 389

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL + +  +      I +
Sbjct: 390 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSAEEFGYSIRV 442

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             ++ +++G +  A++ G  +AL D    M             K HVA I+ G++     
Sbjct: 443 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLILEGNK 489

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197
              + D+   ED   D+D     T+ G
Sbjct: 490 FAVLTDILGDEDHLGDMDFKVAGTEQG 516


>gi|159900395|ref|YP_001546642.1| polynucleotide phosphorylase/polyadenylase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|257096698|sp|A9B8G1|PNP_HERA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|159893434|gb|ABX06514.1| Polyribonucleotide nucleotidyltransferase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 777

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 93/211 (44%), Gaps = 35/211 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKV-PMWIRNT 54
           +R+ GR+ N++R I++   V     GS L   G T +LT ATL     E+++  + I  T
Sbjct: 320 IRVDGRKVNEIRPIAVDVGVLPRVHGSGLFTRGQTQVLTVATLGSPGDEQRLDDLGIETT 379

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQI 112
           +H      Y     STG     EA   R G R ++I   ++  RAL  V+         +
Sbjct: 380 RH--YMHHYNFPAFSTG-----EARPSR-GPRRRDIGHGKLAERALVPVLPEKDKFPYTM 431

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            +  +V+ ++G +  A++ G+ +AL D                 +K  VA ++ G++ G 
Sbjct: 432 RLVSEVLASNGSSSMASVCGSSLALMDA-------------GVPIKAPVAGVAMGLITGK 478

Query: 173 P------IVDLDYGEDSTIDVDANFVMTDSG 197
                  + D+   ED+  D+D     T +G
Sbjct: 479 EAGQFSVLTDIQGLEDALGDMDFKVAGTTAG 509


>gi|78189646|ref|YP_379984.1| polynucleotide phosphorylase/polyadenylase [Chlorobium
           chlorochromatii CaD3]
 gi|123579359|sp|Q3APY4|PNP_CHLCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78171845|gb|ABB28941.1| RNA binding S1 [Chlorobium chlorochromatii CaD3]
          Length = 728

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 8/142 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           RL GR  +Q+R I++   +   A GS L   G+T  L T TL  +        + N+   
Sbjct: 332 RLDGRALDQVRPITIELGLIPRAHGSALFTRGETQALVTLTLGTQKDAQSVDNLTNSDDK 391

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  ++  R+ G       +  R+++ V    A     I I  D
Sbjct: 392 RFYLHYNFPPFSVGECGRLGSIGRREIGHGN----LAERSIKMVAPTEAEFPYTIRIVSD 447

Query: 118 VIQADGGTRTAAITGAWVALHD 139
           +++++G +  A++ G  +AL D
Sbjct: 448 ILESNGSSSMASVCGGTLALMD 469



 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT--AEYGMLPRSTGNRV 74
           T +++K A+G+ +V+ GDT +L T    +K P   ++     +    +Y    R  G   
Sbjct: 19  TGKMAKQADGAAIVRLGDTMVLATVVSSKKTPPLGQDFFPLQVEYREKYSAAGRFPGGFF 78

Query: 75  KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
           KRE   GR   +     R+I RALR +         QIII   VI +D
Sbjct: 79  KRE---GRPSEKEILSARLIDRALRPLFPDGYYYETQIII--SVISSD 121


>gi|312622695|ref|YP_004024308.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203162|gb|ADQ46489.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 701

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 33/179 (18%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R  GR+ +++R +     +     GS L K G T +LT ATL  K  M     +   +  
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111
                Y   P STG     E+   R  GR     R IG      RAL  V+         
Sbjct: 373 RYMHHYNFPPFSTG-----ESKPVRGPGR-----REIGHGALAERALEPVIPSEDEFPYT 422

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           I +  +V+ ++G T  A++ G+ +AL D                 +K  VA IS G++ 
Sbjct: 423 IRLVSEVLTSNGSTSQASVCGSTLALMDA-------------GVPIKAPVAGISIGLIT 468


>gi|56478759|ref|YP_160348.1| polynucleotide phosphorylase/polyadenylase [Aromatoleum aromaticum
           EbN1]
 gi|81356612|sp|Q5NZR7|PNP_AZOSE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56314802|emb|CAI09447.1| polyribonucleotide nucleotidyltransferase protein [Aromatoleum
           aromaticum EbN1]
          Length = 699

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  ATL    +E++   I      
Sbjct: 316 RIDGRDTRTVRPIDIRVGVLPRTHGSALFTRGETQALVIATLGTGRDEQIIDAIAGEYRE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +      R+ G  +  +R +  AL +  D     S  + +  +
Sbjct: 376 SFLLHYNFPPFSTGETGRMGVTKRREVGHGRLAKRALIAALPADEDF----SYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A++ GA +A+ D    M             K HVA I+ G++
Sbjct: 432 ITESNGSSSMASVCGASLAMMDAGVPM-------------KAHVAGIAMGLI 470


>gi|296136710|ref|YP_003643952.1| polyribonucleotide nucleotidyltransferase [Thiomonas intermedia
           K12]
 gi|295796832|gb|ADG31622.1| polyribonucleotide nucleotidyltransferase [Thiomonas intermedia
           K12]
          Length = 719

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 27/175 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +S+   V     GS L   G+T  L  ATL       I +   G    
Sbjct: 315 RIDGRDTRTVRPLSIRTSVLPRTHGSALFTRGETQALAVATLGTDQDAQIIDALGGEYRD 374

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL +V+      +  + +
Sbjct: 375 RFLLHYNMPPFATGE-------TGRVGTPKRREIGHGRLAKRALLAVLPKKEDFAYTMRV 427

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             +V +++G +  A++ G  +AL D                 LK HVA I+ G++
Sbjct: 428 VSEVTESNGSSSMASVCGGCLALLDA-------------GVPLKAHVAGIAMGLI 469


>gi|223044246|ref|ZP_03614283.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis
           SK14]
 gi|222442396|gb|EEE48504.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis
           SK14]
          Length = 699

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 99/232 (42%), Gaps = 35/232 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T +++K A G+ LV++GDT +L+TAT   K P   R+     +T  Y       G +P  
Sbjct: 21  TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   KRE   GR G  +    R+I R +R +         QI+        D     AA
Sbjct: 75  -GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEMAA 130

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ +AL      + D    FQ      G +A ++ G + G  +++    E     +D 
Sbjct: 131 MIGSSMAL-----SVSDIP--FQ------GPIAGVNVGYVDGNYVINPSVNEKEVSRLDL 177

Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 D+ ++VE  G++E    ++      +    + I  L+  Q+++I +
Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITESEMLEAIFFGHEEIKRLVAFQQEIIDH 225


>gi|225181391|ref|ZP_03734835.1| Polyribonucleotide nucleotidyltransferase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167972|gb|EEG76779.1| Polyribonucleotide nucleotidyltransferase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 721

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 102/245 (41%), Gaps = 35/245 (14%)

Query: 1   MRLSGRQENQMREISL-TRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTK 55
           M+L+GR      E+S+ T R++K A GS ++++GDT +L+TAT      E V  +     
Sbjct: 6   MQLAGR------ELSIETGRIAKQASGSVVLRYGDTVVLSTATASAEPREGVDFFPMTVD 59

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +       G +P   G  +KRE   GR   ++    R+  R  R +       +  I+  
Sbjct: 60  YEERLYAVGKIP---GGFIKRE---GRPTEKAILSARLTDRPCRPLFPKGFRNAVHIVTT 113

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPI 174
              +  D      +I GA  AL               +S +   G ++A+  G + G P+
Sbjct: 114 VLSVDQDNPPEVLSIVGASAAL--------------SISNIPFAGPLSAVVVGWIDGKPV 159

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           ++ +  +     +      T  G ++   G+ E    ++D     +    D   +++ LQ
Sbjct: 160 INPNQEQAEQSKLHLVVASTKDGIMMVEAGAHE---LTEDEVLEAIMAGDDANKEIVALQ 216

Query: 235 KDVIS 239
           + +++
Sbjct: 217 EQMVA 221


>gi|301055297|ref|YP_003793508.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis CI]
 gi|300377466|gb|ADK06370.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 712

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 25/146 (17%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT   +     +N     
Sbjct: 3   QEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASREA----KNVDFFP 58

Query: 59  ITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +T  Y       G +P   G  +KRE   GR   ++    R+I R +R +         Q
Sbjct: 59  LTVNYEERLYAVGKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQ 112

Query: 112 IIIDCDVIQADGGTRTAAITGAWVAL 137
           ++     +  D  +  AA+ G+ +AL
Sbjct: 113 VVSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|284036900|ref|YP_003386830.1| polyribonucleotide nucleotidyltransferase [Spirosoma linguale DSM
           74]
 gi|283816193|gb|ADB38031.1| polyribonucleotide nucleotidyltransferase [Spirosoma linguale DSM
           74]
          Length = 708

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 83/210 (39%), Gaps = 37/210 (17%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
           RL GR+ +Q+R+IS          GS L   G+T  LTT TL  K    I +      + 
Sbjct: 318 RLDGRKLDQIRQISAEAGYLPGPHGSALFTRGETQSLTTVTLGTKTDEQIVDQTMFQGYS 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111
                Y     STG     E    R  GR     R IG      R+L+ V+  +      
Sbjct: 378 KFLLHYNFPGFSTG-----EVKPNRGAGR-----REIGHGNLAHRSLKKVLPPAEENPYT 427

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC- 170
           I I  D+++++G +  A +    +AL D                 +K  VA I+ G++  
Sbjct: 428 IRIVSDILESNGSSSMATVCAGTMALMDA-------------GIKIKAPVAGIAMGLISD 474

Query: 171 --GYPIV-DLDYGEDSTIDVDANFVMTDSG 197
              Y ++ D+   ED   D+D     T+ G
Sbjct: 475 GDKYAVLSDILGDEDHLGDMDFKVTGTEKG 504



 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 13/116 (11%)

Query: 12  REISL-TRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           REI++ T ++++ A+G+ +V+ GDT LL T       +E V     +  +    A  G +
Sbjct: 15  REITIETGKLARQADGAVVVRLGDTMLLATVVSSKDAKEGVDFLPLSVDYQEKFASAGRI 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
           P   G+  +RE   GR G     I R++ RALR +   +     Q++I   +I AD
Sbjct: 75  P---GSFQRRE---GRLGDHEILISRLVDRALRPIFPDNYHADTQVMI--TLISAD 122


>gi|188994656|ref|YP_001928908.1| polynucleotide phosphorylase/polyadenylase [Porphyromonas
           gingivalis ATCC 33277]
 gi|188594336|dbj|BAG33311.1| polyribonucleotide nucleotidyltransferase [Porphyromonas gingivalis
           ATCC 33277]
          Length = 774

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 10/143 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           RL GR+  ++R I +         GS +   G+T  LTT TL    +EK+   + N    
Sbjct: 349 RLDGRKATEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVTLGTKSDEKLVDDVLNYTKE 408

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+ ++        ++I   D
Sbjct: 409 RFLLHYNFPPFSTGEARPQRGVGRREIGHGN----LAHRALKRMIPTDYPYVVRVI--SD 462

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           +++++G +  A +    +AL D 
Sbjct: 463 ILESNGSSSMATVCAGTLALRDA 485


>gi|294340865|emb|CAZ89260.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Thiomonas sp. 3As]
          Length = 719

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 27/175 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +S+   V     GS L   G+T  L  ATL       I +   G    
Sbjct: 315 RIDGRDTRTVRPLSIRTSVLPRTHGSALFTRGETQALAVATLGTDQDAQIIDALGGEYRD 374

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL +V+      +  + +
Sbjct: 375 RFLLHYNMPPFATGE-------TGRVGTPKRREIGHGRLAKRALLAVLPKKEDFAYTMRV 427

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             +V +++G +  A++ G  +AL D                 LK HVA I+ G++
Sbjct: 428 VSEVTESNGSSSMASVCGGCLALLDA-------------GVPLKAHVAGIAMGLI 469


>gi|326429591|gb|EGD75161.1| hypothetical protein PTSG_06814 [Salpingoeca sp. ATCC 50818]
          Length = 241

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 6/146 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ N++R +     +  +A+GS   + GDT ++      ++     +    G + 
Sbjct: 10  LREDGRRANELRRVEANVGMFPHADGSAYFQQGDTKVVAIVNGPKQ--GVGKAGDAGKVV 67

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            ++ M   ST  R K      R   ++ E+   I     S +        QI I   V+Q
Sbjct: 68  CDFEMAAFSTTQRRKPL----RLDRKNAELGSKIASTFESAIMTDLYPRSQIEISVQVLQ 123

Query: 121 ADGGTRTAAITGAWVALHDCLQHMED 146
           ADGG    AI    +AL D    M D
Sbjct: 124 ADGGVLAVAINAVTLALMDAGVAMTD 149


>gi|75674227|ref|YP_316648.1| polynucleotide phosphorylase/polyadenylase [Nitrobacter
           winogradskyi Nb-255]
 gi|123614401|sp|Q3SWP5|PNP_NITWN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|74419097|gb|ABA03296.1| 3'exoribonuclease [Nitrobacter winogradskyi Nb-255]
          Length = 718

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 24/231 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I     V   A GS L   G+T  +   TL    +E+    +  T   
Sbjct: 316 RIDGRDVKTVRNIVAEAGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDSLAGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G        +GR GG + +EI   ++  RA+R V+         I +
Sbjct: 376 TFLLHYNFPPYSVGE-------TGRLGGAKRREIGHGKLAWRAIRPVLPPHHEFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++ +++G +  A++ GA ++L D    ++  +    +  +L+G   A+   +L     
Sbjct: 429 VSEITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGERYAVLSDILG---- 484

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                 ED   D+D     T++G I  +Q   + A  +++     L  AKD
Sbjct: 485 -----DEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITEEIMKVALGQAKD 529


>gi|302872107|ref|YP_003840743.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574966|gb|ADL42757.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 701

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 33/179 (18%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R  GR+ +++R +     +     GS L K G T +LT ATL  K  M     +   +  
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111
                Y   P STG     E+   R  GR     R IG      RAL  V+         
Sbjct: 373 RYMHHYNFPPFSTG-----ESKPIRGPGR-----REIGHGALAERALEPVIPSEDEFPYT 422

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           I +  +V+ ++G T  A++ G+ +AL D                 +K  VA IS G++ 
Sbjct: 423 IRLVSEVLTSNGSTSQASVCGSTLALMDA-------------GVPIKAPVAGISIGLIT 468


>gi|167537032|ref|XP_001750186.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771348|gb|EDQ85016.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1336

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 24/178 (13%)

Query: 8   ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK-HGWITAEYGML 66
           ++++R +     V + A+GS  V+ G+T +L              N   H  ++ E+   
Sbjct: 37  DDELRSVKAKLGVFEQADGSAYVEQGNTKVLAIINGPHDSDARGPNASGHLTVSCEFIYA 96

Query: 67  PRSTGNRVKREAVS---GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
             ST  R  R  +      QG R       I R L SVV    L    I ++  V+QADG
Sbjct: 97  SFSTDQRRARSRLDRKLAEQGTR-------IARTLESVVMGQLLSRSTINLNVQVLQADG 149

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           G    AI  A +A+ D    M+D              + A + G+L G  ++D ++ E
Sbjct: 150 GVLATAINAASLAMMDAGVPMKD-------------FLCACNAGVLEGVAVLDTNHSE 194


>gi|307128697|ref|YP_003880727.1| polynucleotide phosphorylase/polyadenylase [Candidatus Sulcia
           muelleri CARI]
 gi|306483159|gb|ADM90029.1| polynucleotide phosphorylase/polyadenylase [Candidatus Sulcia
           muelleri CARI]
          Length = 710

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 12/145 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
           +RL GR  + +R IS          GS +   G+T  L+T TL       K+   I   K
Sbjct: 319 IRLDGRSLDDIRNISSKVDCLPGVHGSAIFSRGETQALSTVTLGSSLDVNKIDNVIIQDK 378

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +    Y   P STG     + VS R+ G     Q    RAL++++      + +++  
Sbjct: 379 QKF-YLHYNFPPFSTGEIKLLKGVSRREIGHGNLAQ----RALKNIIPFDNPYTIRVV-- 431

Query: 116 CDVIQADGGTRTAAITGAWVALHDC 140
            DV++++G +  A +  + +AL D 
Sbjct: 432 SDVLESNGSSSMATVCASTLALMDA 456


>gi|322703951|gb|EFY95552.1| exosome complex exonuclease RRP41 [Metarhizium anisopliae ARSEF 23]
          Length = 273

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 81/210 (38%), Gaps = 19/210 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH---- 56
           +R+ GR+ N++R +    R    A+GS   + G T ++   T   +        +     
Sbjct: 13  LRVDGRRWNELRRLHAQIRTQDAADGSSYFEMGHTKVMCVVTGPSEQQQAQAQAQRRGGQ 72

Query: 57  ------GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110
                   I     +   S+ +R KR     R   R+QEI+  I +AL S V        
Sbjct: 73  APGRDAASIIVNVVIAGFSSVDRKKR----ARSDKRTQEIEITIAKALSSTVHTHLFPHS 128

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
            I +   V+  DG    A I  A +A+ D    M D      ++    G  ++ + G   
Sbjct: 129 SITVSLHVLSQDGSLLAALINAATLAVIDAGIPMTD-----YIAACTAGSTSSYAAGDDS 183

Query: 171 GYPIVDLDYGEDSTIDVDANFVMTDSGHIV 200
             P++DL+  E+  +       + DS  +V
Sbjct: 184 ADPLLDLNNQEEQELPFLTVASLGDSDRVV 213


>gi|226940843|ref|YP_002795917.1| polynucleotide phosphorylase/polyadenylase [Laribacter
           hongkongensis HLHK9]
 gi|254782724|sp|C1D8W8|PNP_LARHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226715770|gb|ACO74908.1| Pnp [Laribacter hongkongensis HLHK9]
          Length = 701

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 31/207 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R I++   V   A GS L   G+T  L + TL  K    I +   G  T 
Sbjct: 316 RIDGRDTRTVRPIAIRTGVLPRAHGSVLFTRGETQALVSTTLGTKQDEQIIDALAGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P STG        +GR G  + +EI   R+  RAL +V+      S  + +
Sbjct: 376 RFMLHYNFPPYSTGE-------TGRMGPPKRREIGHGRLAKRALIAVLPKQEDFSYSMRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             ++ +++G +  A++ G  ++L +                 L  HVA I+ G++     
Sbjct: 429 VSEITESNGSSSMASVCGGCLSLMNA-------------GVPLSAHVAGIAMGLILEDNR 475

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197
              + D+   ED   D+D     T++G
Sbjct: 476 FAVLTDILGDEDHLGDMDFKVAGTENG 502


>gi|254195065|ref|ZP_04901494.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei S13]
 gi|169651813|gb|EDS84506.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei S13]
          Length = 713

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 83/207 (40%), Gaps = 31/207 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL + +  +      I +
Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRV 434

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             ++ +++G +  A++ G  +AL D    M             K HVA I+ G++     
Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLILEGNK 481

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197
              + D+   ED   D+D   V T  G
Sbjct: 482 FAVLTDILGDEDHLGDMDFKVVGTADG 508


>gi|242373566|ref|ZP_04819140.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis M23864:W1]
 gi|242348929|gb|EES40531.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis M23864:W1]
          Length = 699

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 99/232 (42%), Gaps = 35/232 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T +++K A G+ LV++GDT +L+TAT   K P   R+     +T  Y       G +P  
Sbjct: 21  TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   KRE   GR G  +    R+I R +R +         QI+        D     AA
Sbjct: 75  -GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEMAA 130

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ +AL      + D    FQ      G +A ++ G + G  +++    E     +D 
Sbjct: 131 MIGSSMAL-----SVSDIP--FQ------GPIAGVNVGYVDGNYVINPSVSEKEVSRLDL 177

Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 D+ ++VE  G++E    ++      +    + I  L+  Q+++I +
Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITESEMLEAIFFGHEEIKRLVAFQQEIIDH 225


>gi|312127889|ref|YP_003992763.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777908|gb|ADQ07394.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 701

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 33/179 (18%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R  GR+ +++R +     +     GS L K G T +LT ATL  K  M     +   +  
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111
                Y   P STG     E+   R  GR     R IG      RAL  V+         
Sbjct: 373 RYMHHYNFPPFSTG-----ESKPVRGPGR-----REIGHGALAERALEPVIPSEDEFPYT 422

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           I +  +V+ ++G T  A++ G+ +AL D                 +K  VA IS G++ 
Sbjct: 423 IRLVSEVLTSNGSTSQASVCGSTLALMDA-------------GVPIKAPVAGISIGLIT 468


>gi|282165296|ref|YP_003357681.1| probable exosome complex exonuclease 2 [Methanocella paludicola
           SANAE]
 gi|282157610|dbj|BAI62698.1| probable exosome complex exonuclease 2 [Methanocella paludicola
           SANAE]
          Length = 259

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 99/237 (41%), Gaps = 23/237 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ ++ R +++   V   AEGS  V  GD+ ++    ++   P ++     G I  
Sbjct: 23  RADGRKFDEFRPVTIKVGVIGKAEGSSDVMIGDSRVVVGVKIQPGEP-FMDTPDKGVIIT 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              ++P ++         +G     + E+ R++ R +R    +DLS L    G +   + 
Sbjct: 82  NLELVPLASPT-----FETGPPREDAIELARVVDRGVRESEAIDLSKLCIESGQKVWMVF 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM----L 169
           ID  V+  DG    AA  GA  AL       +  + KF L +  K  +  +  G+    +
Sbjct: 137 IDVHVLDHDGNLMDAASMGAIAALMSA----KIPNAKFGLGEDAKLPLEDVPVGVTAVKI 192

Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
               I+D    E++        +    G +  +Q S    T + D    ++++AK++
Sbjct: 193 GSSIILDPSLDEENVASCKLTVITNKEGALAGMQKSG-VGTLTPDEVKYIVHIAKEK 248


>gi|255550900|ref|XP_002516498.1| Exosome complex exonuclease RRP46, putative [Ricinus communis]
 gi|223544318|gb|EEF45839.1| Exosome complex exonuclease RRP46, putative [Ricinus communis]
          Length = 211

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 77/209 (36%), Gaps = 45/209 (21%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R ++ +R V   A GS     GDT +L                      A
Sbjct: 5   RDDGRTPNQLRPLACSRNVLNRAHGSASWCQGDTKVL---------------------AA 43

Query: 62  EYGMLPRSTGNRVKREAV--------SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            YG  P +  N    +A         +G+ G   +E + ++ R L+++  L+   +    
Sbjct: 44  VYGPKPGTKKNENPEKACIEVIWKPKTGQIGKVEKEYEMILKRTLQTICVLTINPNTTTS 103

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CG 171
           +   V+  DG   T AI  A  AL D    M+              H+A   C  L   G
Sbjct: 104 VIVQVVHDDGALLTCAINAACAALVDAGIPMK--------------HLAVAICCCLSESG 149

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIV 200
           Y I+D    E+  +      V  +S H V
Sbjct: 150 YVILDPTKLEEQKMKGFTYLVFPNSVHSV 178


>gi|218194134|gb|EEC76561.1| hypothetical protein OsI_14380 [Oryza sativa Indica Group]
          Length = 238

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 29/197 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R  S TR     A GS     GDT +L            +   K G    
Sbjct: 5   RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAA----------VYGPKPG---T 51

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
             G  P      V  + ++G+ G + +E +  + R L+S+  L+   +    +   V+  
Sbjct: 52  RKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGN 111

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA-AISCGMLC-GYPIVDLDY 179
           DG     AI     AL                + +   H+A AI CG+L  G  I+D + 
Sbjct: 112 DGSLLPCAINACCAAL--------------VFAGIPLKHLAVAIGCGVLEDGEVILDTNK 157

Query: 180 GEDSTIDVDANFVMTDS 196
            E+  +   A+ V  +S
Sbjct: 158 AEEQQLKSFAHLVFPNS 174


>gi|222529049|ref|YP_002572931.1| polynucleotide phosphorylase/polyadenylase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|257096680|sp|B9MR54|PNP_ANATD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|222455896|gb|ACM60158.1| Polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 701

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 33/179 (18%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R  GR+ +++R +     +     GS L K G T +LT ATL  K  M     +   +  
Sbjct: 313 RPDGRKFDEIRPLYAEIGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111
                Y   P STG     E+   R  GR     R IG      RAL  V+         
Sbjct: 373 RYMHHYNFPPFSTG-----ESKPVRGPGR-----REIGHGALAERALEPVIPSEDEFPYT 422

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           I +  +V+ ++G T  A++ G+ +AL D                 +K  VA IS G++ 
Sbjct: 423 IRLVSEVLTSNGSTSQASVCGSTLALMDA-------------GVPIKAPVAGISIGLIT 468


>gi|160902045|ref|YP_001567626.1| polynucleotide phosphorylase/polyadenylase [Petrotoga mobilis SJ95]
 gi|187610306|sp|A9BH73|PNP_PETMO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|160359689|gb|ABX31303.1| Polyribonucleotide nucleotidyltransferase [Petrotoga mobilis SJ95]
          Length = 695

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           R+ GR  +++R+I+    +     GS L   G+T  L T TL   + + + +T    +  
Sbjct: 321 RVDGRTCDEIRDITCEVGLIPRVHGSALFTRGETQSLGTVTLGAPLDVQVLDTIFSDEEK 380

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +   VS R+ G       +  RA ++++         I +  D
Sbjct: 381 RFMLHYNFPPFSTGEVKRLRGVSRREIGHGH----LAERAHKNLIPSDEEFPYTIRVVSD 436

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           +++++G +  A++  A +AL D                 ++ HVA I+ G++
Sbjct: 437 ILESNGSSSMASVCSASLALMDA-------------GVPIQKHVAGIAMGLI 475


>gi|34540549|ref|NP_905028.1| polynucleotide phosphorylase/polyadenylase [Porphyromonas
           gingivalis W83]
 gi|81417555|sp|Q7MW79|PNP_PORGI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|34396862|gb|AAQ65927.1| polyribonucleotide nucleotidyltransferase [Porphyromonas gingivalis
           W83]
          Length = 743

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 10/143 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           RL GR+  ++R I +         GS +   G+T  LTT TL    +EK+   + N    
Sbjct: 318 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVTLGTKSDEKLVDDVLNYTKE 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+ ++        ++I   D
Sbjct: 378 RFLLHYNFPPFSTGEARPQRGVGRREIGHGN----LAHRALKRMIPTDYPYVVRVI--SD 431

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           +++++G +  A +    +AL D 
Sbjct: 432 ILESNGSSSMATVCAGTLALRDA 454


>gi|33861747|ref|NP_893308.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|81575818|sp|Q7V0R5|PNP_PROMP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33640115|emb|CAE19650.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 721

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 101/237 (42%), Gaps = 34/237 (14%)

Query: 12  REISLTRRV-SKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYG 64
           REI LT  + +  A G+ +++ GDT LL TAT   K      +P+     +  +      
Sbjct: 13  REIRLTTGLYAPQAGGAVMIECGDTSLLVTATKTTKKQAADFLPLICDYEEKLYAAG--- 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R  G  ++RE   GR   R+  I R+I R +R +         QI+  C  +     
Sbjct: 70  ---RIPGGFMRRE---GRPPERATLIARLIDRPMRPLFPSWMRDEIQIVASCLSLDERVP 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183
                +TGA +A                L+++   G +AA+  G++    I++  Y E  
Sbjct: 124 ADVLGVTGASIAT--------------LLAEIPFYGPMAAVRVGLIGDDFILNPSYREIE 169

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             D+D     +  G IV ++  A +   S+      ++   + +++LIK Q++++ +
Sbjct: 170 KGDLDIVVAGSPEG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVSELIKAQENLLKD 223


>gi|257096721|sp|B2RIW6|PNP_PORG3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 743

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 10/143 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           RL GR+  ++R I +         GS +   G+T  LTT TL    +EK+   + N    
Sbjct: 318 RLDGRKATEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVTLGTKSDEKLVDDVLNYTKE 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+ ++        ++I   D
Sbjct: 378 RFLLHYNFPPFSTGEARPQRGVGRREIGHGN----LAHRALKRMIPTDYPYVVRVI--SD 431

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           +++++G +  A +    +AL D 
Sbjct: 432 ILESNGSSSMATVCAGTLALRDA 454


>gi|163855920|ref|YP_001630218.1| polynucleotide phosphorylase/polyadenylase [Bordetella petrii DSM
           12804]
 gi|226702623|sp|A9IGJ9|PNP_BORPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|163259648|emb|CAP41949.1| polyribonucleotide nucleotidyltransferase [Bordetella petrii]
          Length = 719

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 320 RIDGRDTRTVRPIEIRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL S++         I +
Sbjct: 380 RFMLHYNMPPFATGE-------TGRIGVPKRREIGHGRLAKRALVSLLPAHEDFQYTIRL 432

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +A+ D    ++D             HVA ++ G++ 
Sbjct: 433 VSEITESNGSSSMASVCGGSLAMMDAGVPLQD-------------HVAGVAMGLIL 475


>gi|312134904|ref|YP_004002242.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           owensensis OL]
 gi|311774955|gb|ADQ04442.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           owensensis OL]
          Length = 701

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 33/179 (18%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R  GR+ +++R +     +     GS L K G T +LT ATL  K  M     +   +  
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111
                Y   P STG     E+   R  GR     R IG      RAL  V+         
Sbjct: 373 RYMHHYNFPPFSTG-----ESKPIRGPGR-----REIGHGALAERALEPVIPSEDEFPYT 422

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           I +  +V+ ++G T  A++ G+ +AL D                 +K  VA IS G++ 
Sbjct: 423 IRLVSEVLTSNGSTSQASVCGSTLALMDA-------------GVPIKAPVAGISIGLIT 468


>gi|167585967|ref|ZP_02378355.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ubonensis
           Bu]
          Length = 715

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G  +  +R + + L S  +        I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEF----GYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477


>gi|154686086|ref|YP_001421247.1| polynucleotide phosphorylase/polyadenylase [Bacillus
           amyloliquefaciens FZB42]
 gi|187470933|sp|A7Z4U0|PNP_BACA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|154351937|gb|ABS74016.1| PnpA [Bacillus amyloliquefaciens FZB42]
          Length = 707

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 104/229 (45%), Gaps = 35/229 (15%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWITAEY--GMLPRSTGNRVK 75
           +++K A G+ +V++GDT +L+TAT  +E  P+        +    Y  G +P   G  +K
Sbjct: 23  QLAKQANGAVMVRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP---GGFIK 79

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE   GR   ++    R+I R +R +         Q+I     +  D  +  AA+ G+ +
Sbjct: 80  RE---GRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEMAAMFGSSL 136

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD--LDYGEDSTIDVDANFVM 193
           AL  C+  +             +G +A ++ G + G  +++  +D  E S    D N ++
Sbjct: 137 AL--CVSDIP-----------FEGPIAGVTVGRIDGKFVINPTVDQLEKS----DINLIV 179

Query: 194 T---DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
               D+ ++VE  G+ E     ++     +    + I  LI  Q+++++
Sbjct: 180 AGTKDAINMVEA-GADE---VPEEIMLEAIMFGHEEIKRLIAFQEEIVA 224


>gi|124022312|ref|YP_001016619.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9303]
 gi|187610312|sp|A2C794|PNP_PROM3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123962598|gb|ABM77354.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. MIT 9303]
          Length = 721

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 97/236 (41%), Gaps = 32/236 (13%)

Query: 12  REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64
           REI LT  R +  A GS +++ GDT +L TAT        + +P+     +  +      
Sbjct: 13  REIRLTTGRYAPQAGGSVMMECGDTSVLVTATRSTGREGIDFLPLICDYEERLYAAG--- 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R  G+ ++RE   GR   R+  I R+I R +R +         QI+  C  +     
Sbjct: 70  ---RIPGSFMRRE---GRPPERATLIARLIDRPMRPLFPSWMRDDLQIVATCLSLDERVP 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+TGA +A                     +G +AA+  G+L    +++  Y E   
Sbjct: 124 ADVLAVTGASMA-------------TLLAGIPFQGPMAAVRVGLLGDDFVLNPSYREIER 170

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            D+D     T  G +V V+  A +    +      ++   + + +LIK Q+ ++ +
Sbjct: 171 GDLDLVVAGTPDG-VVMVEAGANQ--LPEGDVIEAIDFGYEAVCELIKAQQSILKD 223


>gi|291542944|emb|CBL16054.1| polyribonucleotide nucleotidyltransferase [Ruminococcus bromii
           L2-63]
          Length = 739

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 25/165 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLPRSTGN 72
           T ++++ A G+CLV +GDT +    T  EK    V  +  +  +       G +P   G+
Sbjct: 26  TGKMTQLANGACLVHYGDTTVHVAVTASEKPREGVDFFPLSVDYEEKMYAVGKIP---GS 82

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR   ++    R+I R +R + D S      I+     +  D      A+ G
Sbjct: 83  YLKRE---GRPSEKAILTSRVIDRPIRPLFDKSMRNDVSIVCTVMSVDPDCQPEIVAMIG 139

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVD 176
           A +A+               +S V   G ++  S GM+ G  I++
Sbjct: 140 ASIAI--------------SISDVPWNGPISGCSVGMIDGEYIIN 170


>gi|296087634|emb|CBI34890.3| unnamed protein product [Vitis vinifera]
          Length = 905

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 21/173 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR  N++R +           GS L   GDT +L T TL         ++  G  T
Sbjct: 317 LRVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPGDAQRLDSLVGPPT 376

Query: 61  A----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S     KR  ++ R+ G       +  +AL +V+         + I+ 
Sbjct: 377 KRFMLHYSFPPFSINEVGKRVGLNRREVGHGT----LAEKALLAVLPPEEEFPYTVRINS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           +V+ +DG T  A + G  +AL D                 L+ HVA IS G++
Sbjct: 433 EVMASDGSTSMATVCGGSMALMDA-------------GIPLREHVAGISVGLV 472


>gi|198282699|ref|YP_002219020.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|226702590|sp|B5EMD4|PNP_ACIF5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|198247220|gb|ACH82813.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 692

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I++   V     GS L   G+T  L  ATL    +E++   ++     
Sbjct: 313 RIDGRDSKTVRPITIEAGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALQGESRD 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG      +   R+ G      R+  RA+ +V+   +     + +  +
Sbjct: 373 RFMLHYNFPPFSTGETGMVGSPKRREIGHG----RLAKRAIAAVLPTDSEFPYSLRVVSE 428

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           V++++G +  A + GA +AL D                 LK  VA ++ G++
Sbjct: 429 VLESNGSSSMATVCGASLALMDA-------------GVPLKAPVAGVAMGLI 467


>gi|218665115|ref|YP_002424891.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|257096668|sp|B7J4D8|PNP_ACIF2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218517328|gb|ACK77914.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 690

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I++   V     GS L   G+T  L  ATL    +E++   ++     
Sbjct: 311 RIDGRDSKTVRPITIEAGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALQGESRD 370

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG      +   R+ G      R+  RA+ +V+   +     + +  +
Sbjct: 371 RFMLHYNFPPFSTGETGMVGSPKRREIGHG----RLAKRAIAAVLPTDSEFPYSLRVVSE 426

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           V++++G +  A + GA +AL D                 LK  VA ++ G++
Sbjct: 427 VLESNGSSSMATVCGASLALMDA-------------GVPLKAPVAGVAMGLI 465


>gi|148240244|ref|YP_001225631.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. WH
           7803]
 gi|187611326|sp|A5GN19|PNP_SYNPW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|147848783|emb|CAK24334.1| Polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           7803]
          Length = 721

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 96/236 (40%), Gaps = 32/236 (13%)

Query: 12  REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64
           REI LT  R +  A GS +++ GDT +L TAT        + +P+     +  +      
Sbjct: 13  REIRLTTGRYAPQAGGSVMIECGDTSVLVTATRSSGREGIDFLPLICDYEERLYAAG--- 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R  G+ ++RE   GR   R+  I R+I R +R +         QI+  C  +     
Sbjct: 70  ---RIPGSFMRRE---GRPPERATLISRLIDRPMRPLFPSWLRDDLQIVATCMSLDERVP 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++TGA +A                      G +AA+  G+L    +++  Y E   
Sbjct: 124 ADVLSVTGASMA-------------TLLAGIPFYGPMAAVRVGLLGDDFVLNPSYREIER 170

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            D+D     T  G IV V+  A +    +      ++   + + +LIK Q+ ++ +
Sbjct: 171 GDLDLVVAGTPEG-IVMVEAGANQ--LPEQDVIEAIDFGYEAVCELIKAQESILKD 223


>gi|152979779|ref|YP_001353149.1| polynucleotide phosphorylase/polyadenylase [Janthinobacterium sp.
           Marseille]
 gi|187610276|sp|A6SY02|PNP_JANMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|151279856|gb|ABR88266.1| polyribonucleotide nucleotidyltransferase [Janthinobacterium sp.
           Marseille]
          Length = 711

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 29/176 (16%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R I++   V     GS L   G+T  L  ATL     E+K+   +     
Sbjct: 320 RIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIATLGTARDEQKIDALMGEYSD 379

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQII 113
            ++   Y M P +TG        +GR G  + +EI   R+  RAL + +      S  + 
Sbjct: 380 RFML-HYNMPPFATGE-------TGRVGTPKRREIGHGRLAKRALVAALPAPEDFSYSVR 431

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           +  ++ +++G +  A++ G  +AL D    M+              HVA I+ G++
Sbjct: 432 LVSEITESNGSSSMASVCGGCLALMDAGVPMQS-------------HVAGIAMGLI 474


>gi|115456671|ref|NP_001051936.1| Os03g0854200 [Oryza sativa Japonica Group]
 gi|75243278|sp|Q84T68|EXOS5_ORYSJ RecName: Full=Exosome complex exonuclease RRP46 homolog; AltName:
           Full=Exosome component 5; AltName: Full=Ribosomal
           RNA-processing protein 46; Short=oRrp46
 gi|57222448|gb|AAO66540.2| putative exosome component [Oryza sativa Japonica Group]
 gi|108712165|gb|ABF99960.1| 3' exoribonuclease family, domain 1 containing protein, expressed
           [Oryza sativa Japonica Group]
 gi|113550407|dbj|BAF13850.1| Os03g0854200 [Oryza sativa Japonica Group]
 gi|215697262|dbj|BAG91256.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 238

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 29/197 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R  S TR     A GS     GDT +L            +   K G    
Sbjct: 5   RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAA----------VYGPKPG---T 51

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
             G  P      V  + ++G+ G + +E +  + R L+S+  L+   +    +   V+  
Sbjct: 52  RKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGN 111

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA-AISCGMLC-GYPIVDLDY 179
           DG     AI     AL                + +   H+A AI CG+L  G  I+D + 
Sbjct: 112 DGSLLPCAINACCAAL--------------VFAGIPLKHLAVAIGCGVLEDGEVILDTNK 157

Query: 180 GEDSTIDVDANFVMTDS 196
            E+  +   A+ V  +S
Sbjct: 158 AEEQQLKSFAHLVFPNS 174


>gi|206560707|ref|YP_002231472.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           cenocepacia J2315]
 gi|257096670|sp|B4E5M6|PNP_BURCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|198036749|emb|CAR52649.1| polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia
           J2315]
          Length = 713

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 320 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G  +  +R + + L S  +        I +  +
Sbjct: 380 RFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEF----GYSIRVVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 436 ITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 475


>gi|254181191|ref|ZP_04887788.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1655]
 gi|184211729|gb|EDU08772.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1655]
          Length = 713

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL + +  +      I +
Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRV 434

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477


>gi|88807542|ref|ZP_01123054.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           7805]
 gi|88788756|gb|EAR19911.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           7805]
          Length = 721

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 96/236 (40%), Gaps = 32/236 (13%)

Query: 12  REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64
           REI LT  R +  A GS +++ GDT +L TAT        + +P+     +  +      
Sbjct: 13  REIRLTTGRYAPQAGGSVMIECGDTSVLVTATRSSGREGIDFLPLICDYEERLYAAG--- 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R  G+ ++RE   GR   R+  I R+I R +R +         QI+  C  +     
Sbjct: 70  ---RIPGSFMRRE---GRPPERATLISRLIDRPMRPLFPSWLRDDLQIVATCMSLDERVP 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++TGA +A                      G +AA+  G+L    +++  Y E   
Sbjct: 124 ADVLSVTGASMA-------------TLLAGIPFYGPMAAVRVGLLGDDFVLNPSYREIER 170

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            D+D     T  G IV V+  A +    +      ++   + + +LIK Q+ ++ +
Sbjct: 171 GDLDLVVAGTPEG-IVMVEAGANQ--LPEQDVIEAIDFGYEAVCELIKAQESILKD 223


>gi|156537299|ref|XP_001606070.1| PREDICTED: similar to exosomal 3-5 exoribonuclease complex subunit
           Rrp41-like protein [Nasonia vitripennis]
          Length = 284

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+  R+  ++R++ +   V   A+GS  ++ G T ++ +A    ++P     +  G I  
Sbjct: 39  RVDSRKHKELRKMFIKLGVVSQAKGSAYIEMGQTKVICSAFDPREIPNKTSYSTQGEIFC 98

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           E+     +T  R   +     Q    +E   ++ RAL   V      + Q+ +   V+  
Sbjct: 99  EFKFASFATCKRKGHQ-----QDTEEKEYSLIMQRALEPAVCRHEFPNFQVDVYALVLDN 153

Query: 122 DGGTRTAAITGAWVAL 137
            G    AAI GA +AL
Sbjct: 154 GGSALGAAIMGASLAL 169


>gi|145589238|ref|YP_001155835.1| polynucleotide phosphorylase/polyadenylase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|187610308|sp|A4SXQ7|PNP_POLSQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145047644|gb|ABP34271.1| 3' exoribonuclease [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 722

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTARDEQIIDALEGEYRD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL  V+  +   +  I +
Sbjct: 376 RFMFHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPSAEDFAYSIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +A+ D                 +K HVA ++ G++ 
Sbjct: 429 VSEITESNGSSSMASVCGGCLAMMDA-------------GVPVKAHVAGVAMGLIL 471


>gi|107023192|ref|YP_621519.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           cenocepacia AU 1054]
 gi|116690274|ref|YP_835897.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           cenocepacia HI2424]
 gi|123244852|sp|Q1BV09|PNP_BURCA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470943|sp|A0K927|PNP_BURCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|105893381|gb|ABF76546.1| 3' exoribonuclease [Burkholderia cenocepacia AU 1054]
 gi|116648363|gb|ABK09004.1| 3' exoribonuclease [Burkholderia cenocepacia HI2424]
          Length = 715

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G  +  +R + + L S  +        I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEF----GYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477


>gi|325524616|gb|EGD02631.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. TJI49]
          Length = 713

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 320 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL + +  +      I +
Sbjct: 380 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRV 432

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 433 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 475


>gi|171463523|ref|YP_001797636.1| Polyribonucleotide nucleotidyltransferase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|226702675|sp|B1XUJ5|PNP_POLNS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|171193061|gb|ACB44022.1| Polyribonucleotide nucleotidyltransferase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 722

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTARDEQIIDVLEGEYRD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL  V+  +   +  I +
Sbjct: 376 RFMFHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPSAEDFAYSIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +A+ D                 +K HVA ++ G++ 
Sbjct: 429 VSEITESNGSSSMASVCGGCLAMMDA-------------GVPVKAHVAGVAMGLIL 471


>gi|134296437|ref|YP_001120172.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           vietnamiensis G4]
 gi|187470949|sp|A4JGD4|PNP_BURVG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|134139594|gb|ABO55337.1| 3' exoribonuclease [Burkholderia vietnamiensis G4]
          Length = 715

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G  +  +R + + L S  +        I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEF----GYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477


>gi|53718843|ref|YP_107829.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei K96243]
 gi|76810240|ref|YP_332840.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 1710b]
 gi|126439036|ref|YP_001058334.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 668]
 gi|126454918|ref|YP_001065573.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 1106a]
 gi|134283923|ref|ZP_01770619.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 305]
 gi|167718839|ref|ZP_02402075.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei DM98]
 gi|167737848|ref|ZP_02410622.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 14]
 gi|167815032|ref|ZP_02446712.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 91]
 gi|167823448|ref|ZP_02454919.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 9]
 gi|167845000|ref|ZP_02470508.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei B7210]
 gi|167893541|ref|ZP_02480943.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 7894]
 gi|167901988|ref|ZP_02489193.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei NCTC 13177]
 gi|167910223|ref|ZP_02497314.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 112]
 gi|167918256|ref|ZP_02505347.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei BCC215]
 gi|217419798|ref|ZP_03451304.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 576]
 gi|226195372|ref|ZP_03790961.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei Pakistan 9]
 gi|237811578|ref|YP_002896029.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei MSHR346]
 gi|242315054|ref|ZP_04814070.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1106b]
 gi|254190554|ref|ZP_04897061.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254258157|ref|ZP_04949211.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1710a]
 gi|81380050|sp|Q63VN7|PNP_BURPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123599745|sp|Q3JUB3|PNP_BURP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470947|sp|A3NTA2|PNP_BURP0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470948|sp|A3N7L3|PNP_BURP6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|52209257|emb|CAH35202.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei K96243]
 gi|76579693|gb|ABA49168.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1710b]
 gi|126218529|gb|ABN82035.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 668]
 gi|126228560|gb|ABN92100.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1106a]
 gi|134244712|gb|EBA44810.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 305]
 gi|157938229|gb|EDO93899.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|217397102|gb|EEC37118.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 576]
 gi|225932574|gb|EEH28572.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei Pakistan 9]
 gi|237503430|gb|ACQ95748.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei MSHR346]
 gi|242138293|gb|EES24695.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1106b]
 gi|254216846|gb|EET06230.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1710a]
          Length = 713

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL + +  +      I +
Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRV 434

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477


>gi|254247654|ref|ZP_04940975.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Burkholderia
           cenocepacia PC184]
 gi|124872430|gb|EAY64146.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Burkholderia
           cenocepacia PC184]
          Length = 730

 Score = 40.8 bits (94), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 80/204 (39%), Gaps = 25/204 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 337 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 396

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G  +  +R + + L S  +        I +  +
Sbjct: 397 RFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEF----GYSIRVVSE 452

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D    M             K HVA I+ G++        
Sbjct: 453 ITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLILEGNKFAV 499

Query: 174 IVDLDYGEDSTIDVDANFVMTDSG 197
           + D+   ED   D+D     T+ G
Sbjct: 500 LTDILGDEDHLGDMDFKVAGTEQG 523


>gi|225452398|ref|XP_002273777.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 997

 Score = 40.8 bits (94), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 21/173 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR  N++R +           GS L   GDT +L T TL         ++  G  T
Sbjct: 368 LRVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPGDAQRLDSLVGPPT 427

Query: 61  A----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S     KR  ++ R+ G       +  +AL +V+         + I+ 
Sbjct: 428 KRFMLHYSFPPFSINEVGKRVGLNRREVGHGT----LAEKALLAVLPPEEEFPYTVRINS 483

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           +V+ +DG T  A + G  +AL D                 L+ HVA IS G++
Sbjct: 484 EVMASDGSTSMATVCGGSMALMDA-------------GIPLREHVAGISVGLV 523


>gi|254298529|ref|ZP_04965981.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 406e]
 gi|157808347|gb|EDO85517.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 406e]
          Length = 713

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL + +  +      I +
Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRV 434

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477


>gi|187479141|ref|YP_787166.1| polynucleotide phosphorylase/polyadenylase [Bordetella avium 197N]
 gi|123765982|sp|Q2KWI6|PNP_BORA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|115423728|emb|CAJ50278.1| polyribonucleotide nucleotidyltransferase [Bordetella avium 197N]
          Length = 718

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 85/207 (41%), Gaps = 31/207 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R IS+   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 320 RIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  R+L  V+         I I
Sbjct: 380 RFMLHYNMPPFATGE-------TGRIGVPKRREIGHGRLAKRSLVPVLPKPEDFQYTIRI 432

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             ++ +++G +  A++ G  +A+ D    + D             HVA ++ G++     
Sbjct: 433 VSEITESNGSSSMASVCGGSLAMMDAGVPITD-------------HVAGVAMGLILENGK 479

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197
              + D+   ED   D+D     T++G
Sbjct: 480 FAVLTDILGDEDHLGDMDFKVAGTENG 506


>gi|78067050|ref|YP_369819.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. 383]
 gi|123742554|sp|Q39EE1|PNP_BURS3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|77967795|gb|ABB09175.1| 3' exoribonuclease [Burkholderia sp. 383]
          Length = 715

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G  +  +R + + L S  +        I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEF----GYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477


>gi|33591966|ref|NP_879610.1| polynucleotide phosphorylase/polyadenylase [Bordetella pertussis
           Tohama I]
 gi|33597949|ref|NP_885592.1| polynucleotide phosphorylase/polyadenylase [Bordetella
           parapertussis 12822]
 gi|81425386|sp|Q7VZU0|PNP_BORPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81426411|sp|Q7W570|PNP_BORPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33571610|emb|CAE41100.1| polyribonucleotide nucleotidyltransferase [Bordetella pertussis
           Tohama I]
 gi|33574378|emb|CAE38716.1| polyribonucleotide nucleotidyltransferase [Bordetella
           parapertussis]
 gi|332381383|gb|AEE66230.1| polynucleotide phosphorylase/polyadenylase [Bordetella pertussis
           CS]
          Length = 719

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 31/207 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R IS+   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 320 RIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL  ++         I +
Sbjct: 380 RFMLHYNMPPFATGE-------TGRIGVPKRREIGHGRLAKRALLPLLPAPEDFQYTIRL 432

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP- 173
             ++ +++G +  A++ G  +A+ D      D             HVA ++ G++     
Sbjct: 433 VSEITESNGSSSMASVCGGSLAMMDAGVPTND-------------HVAGVAMGLILDSGK 479

Query: 174 ---IVDLDYGEDSTIDVDANFVMTDSG 197
              + D+   ED   D+D     T++G
Sbjct: 480 FAVLTDILGDEDHLGDMDFKVAGTETG 506


>gi|293603832|ref|ZP_06686247.1| polyribonucleotide nucleotidyltransferase [Achromobacter piechaudii
           ATCC 43553]
 gi|292817669|gb|EFF76735.1| polyribonucleotide nucleotidyltransferase [Achromobacter piechaudii
           ATCC 43553]
          Length = 720

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 31/207 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R IS+   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 320 RIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  R+L  ++         I I
Sbjct: 380 RFMMHYNMPPFATGE-------TGRIGVPKRREIGHGRLAKRSLIPLLPAPEDFQYTIRI 432

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             ++ +++G +  A++ G  +A+ D    ++D             HVA ++ G++     
Sbjct: 433 VSEITESNGSSSMASVCGGSLAMMDAGVPVKD-------------HVAGVAMGLILDGGK 479

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197
              + D+   ED   D+D     T++G
Sbjct: 480 FAVLTDILGDEDHLGDMDFKVAGTENG 506


>gi|167562173|ref|ZP_02355089.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           oklahomensis EO147]
 gi|167569418|ref|ZP_02362292.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           oklahomensis C6786]
          Length = 714

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL + +  +      I +
Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRV 434

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477


>gi|73974737|ref|XP_857538.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal
           RNA processing protein 41) (Exosome component 4) (p12A)
           isoform 5 [Canis familiaris]
          Length = 238

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 17/156 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L       +      +     +  
Sbjct: 13  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEA-----SGHRALVNC 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR-QIIIDCDVI 119
           +Y     STG R +R       G R S E+   + +   + + L+ L  R QI I   V+
Sbjct: 68  QYSSATFSTGERKRRP-----HGDRKSCEMGLHLRQTFEAAI-LTQLHPRSQIDIYVQVL 121

Query: 120 QADGGTRTAAITGAWVALHDCLQHMED----CSNKF 151
           QADGGT  A +  A +A+ D    M D    CS  F
Sbjct: 122 QADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGF 157


>gi|53725829|ref|YP_103438.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
           ATCC 23344]
 gi|67642196|ref|ZP_00440956.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Burkholderia
           mallei GB8 horse 4]
 gi|121601052|ref|YP_992465.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
           SAVP1]
 gi|124384993|ref|YP_001026732.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
           NCTC 10229]
 gi|126449416|ref|YP_001079983.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
           NCTC 10247]
 gi|167000372|ref|ZP_02266190.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
           PRL-20]
 gi|254175718|ref|ZP_04882378.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
           10399]
 gi|254202114|ref|ZP_04908477.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei FMH]
 gi|254207444|ref|ZP_04913794.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei JHU]
 gi|254359866|ref|ZP_04976136.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
           2002721280]
 gi|81604650|sp|Q62IN1|PNP_BURMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470944|sp|A3MI97|PNP_BURM7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470945|sp|A2S463|PNP_BURM9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470946|sp|A1V2L2|PNP_BURMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|52429252|gb|AAU49845.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
           23344]
 gi|121229862|gb|ABM52380.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
           SAVP1]
 gi|124293013|gb|ABN02282.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei NCTC
           10229]
 gi|126242286|gb|ABO05379.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei NCTC
           10247]
 gi|147746361|gb|EDK53438.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei FMH]
 gi|147751338|gb|EDK58405.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei JHU]
 gi|148029106|gb|EDK87011.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
           2002721280]
 gi|160696762|gb|EDP86732.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
           10399]
 gi|238523292|gb|EEP86731.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Burkholderia
           mallei GB8 horse 4]
 gi|243063706|gb|EES45892.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
           PRL-20]
          Length = 713

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL + +  +      I +
Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRV 434

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477


>gi|307178493|gb|EFN67182.1| Exosome complex exonuclease MTR3 [Camponotus floridanus]
          Length = 282

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 5/122 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  N++R I L   +   A+GS  ++ G+T ++ +     +VP        G +  
Sbjct: 37  RHDGRSNNELRNIFLKTGIISQAKGSAYIEMGNTKIICSVFDPREVPNKTGYCVQGELFC 96

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           E+   P S   R   +     Q    +E   ++ RAL   V L    + Q+ +   V+  
Sbjct: 97  EFKFAPFSHHKRKMHQ-----QDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVLDN 151

Query: 122 DG 123
            G
Sbjct: 152 GG 153


>gi|304440007|ref|ZP_07399900.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371499|gb|EFM25112.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 697

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 17/134 (12%)

Query: 12  REISLT-RRVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEY 63
           RE+ +T  +V++ A G+ LV++GDT +L TAT  +K        P+ +   +  +     
Sbjct: 12  REMRVTIGKVAEQANGAALVEYGDTVVLVTATASKKPREGIDFFPLSVDYEEKMYAV--- 68

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           G +P   G  +KRE   GR   ++    R+I R LR +         Q++     +  D 
Sbjct: 69  GKIP---GGFIKRE---GRPSEKAILTARLIDRPLRPLFPEGYRNDVQVVATALAVDQDN 122

Query: 124 GTRTAAITGAWVAL 137
                A+ G+ +AL
Sbjct: 123 QPDIVAMVGSSIAL 136


>gi|170698105|ref|ZP_02889185.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
           IOP40-10]
 gi|170136963|gb|EDT05211.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
           IOP40-10]
          Length = 714

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G  +  +R + + L S  +        I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEF----GYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477


>gi|284793943|pdb|3HKM|A Chain A, Crystal Structure Of Rice(Oryza Sativa) Rrp46
 gi|284793944|pdb|3HKM|B Chain B, Crystal Structure Of Rice(Oryza Sativa) Rrp46
 gi|284793945|pdb|3HKM|C Chain C, Crystal Structure Of Rice(Oryza Sativa) Rrp46
          Length = 246

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 29/197 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R  S TR     A GS     GDT +L            +   K G    
Sbjct: 5   RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAA----------VYGPKPG---T 51

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
             G  P      V  + ++G+ G + +E +  + R L+S+  L+   +    +   V+  
Sbjct: 52  RKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGN 111

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA-AISCGMLC-GYPIVDLDY 179
           DG     AI     AL                + +   H+A AI CG+L  G  I+D + 
Sbjct: 112 DGSLLPCAINACCAAL--------------VFAGIPLKHLAVAIGCGVLEDGEVILDTNK 157

Query: 180 GEDSTIDVDANFVMTDS 196
            E+  +   A+ V  +S
Sbjct: 158 AEEQQLKSFAHLVFPNS 174


>gi|171316299|ref|ZP_02905520.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
           MEX-5]
 gi|171098525|gb|EDT43326.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
           MEX-5]
          Length = 714

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G  +  +R + + L S  +        I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEF----GYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477


>gi|170733613|ref|YP_001765560.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           cenocepacia MC0-3]
 gi|226702627|sp|B1JVP5|PNP_BURCC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169816855|gb|ACA91438.1| Polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia
           MC0-3]
          Length = 715

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G  +  +R + + L S  +        I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEF----GYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477


>gi|167618527|ref|ZP_02387158.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           thailandensis Bt4]
          Length = 713

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL + +  +      I +
Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRV 434

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477


>gi|152991076|ref|YP_001356798.1| polynucleotide phosphorylase/polyadenylase [Nitratiruptor sp.
           SB155-2]
 gi|187610315|sp|A6Q4N2|PNP_NITSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|151422937|dbj|BAF70441.1| polyribonucleotide nucleotidyltransferase [Nitratiruptor sp.
           SB155-2]
          Length = 732

 Score = 40.8 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 12/142 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
           R  GR    +R I +   +   A GSCL   G+T  L   T+ EK    +      +  +
Sbjct: 345 RADGRGLKDVRPIDIKTNILPSAHGSCLFTRGETQALVVCTIGEKTDAQMYEMLTSKGPE 404

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +      Y   P S G      A   R+ G       +  RAL  VVD+    + +++  
Sbjct: 405 YEHFMVHYNFPPFSVGEAKPISAPGRRELGHGN----LARRALEPVVDVPEDKTYRLV-- 458

Query: 116 CDVIQADGGTRTAAITGAWVAL 137
            ++++++G +  A + G  +AL
Sbjct: 459 SEILESNGSSSMATVCGGALAL 480


>gi|83718859|ref|YP_441610.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           thailandensis E264]
 gi|167580418|ref|ZP_02373292.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           thailandensis TXDOH]
 gi|257139694|ref|ZP_05587956.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           thailandensis E264]
 gi|123726649|sp|Q2SZN9|PNP_BURTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|83652684|gb|ABC36747.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           thailandensis E264]
          Length = 713

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL + +  +      I +
Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRV 434

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477


>gi|33602856|ref|NP_890416.1| polynucleotide phosphorylase/polyadenylase [Bordetella
           bronchiseptica RB50]
 gi|81429864|sp|Q7WCQ0|PNP_BORBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33577298|emb|CAE35855.1| polyribonucleotide nucleotidyltransferase [Bordetella
           bronchiseptica RB50]
          Length = 719

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 31/207 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R IS+   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 320 RIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL  ++         I +
Sbjct: 380 RFMLHYNMPPFATGE-------TGRIGVPKRREIGHGRLAKRALLPLLPAPEDFQYTIRL 432

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP- 173
             ++ +++G +  A++ G  +A+ D      D             HVA ++ G++     
Sbjct: 433 VSEITESNGSSSMASVCGGSLAMMDAGVPTND-------------HVAGVAMGLILDSGK 479

Query: 174 ---IVDLDYGEDSTIDVDANFVMTDSG 197
              + D+   ED   D+D     T++G
Sbjct: 480 FAVLTDILGDEDHLGDMDFKVAGTETG 506


>gi|134095034|ref|YP_001100109.1| polynucleotide phosphorylase/polyadenylase [Herminiimonas
           arsenicoxydans]
 gi|187610275|sp|A4G647|PNP_HERAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|133738937|emb|CAL61984.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Herminiimonas arsenicoxydans]
          Length = 710

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 29/176 (16%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R I++   V     GS L   G+T  L  ATL     E+K+   +     
Sbjct: 320 RIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIATLGTARDEQKIDALMGEYSD 379

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQII 113
            ++   Y M P +TG        +GR G  + +EI   R+  RAL + +      S  + 
Sbjct: 380 RFML-HYNMPPFATGE-------TGRVGTPKRREIGHGRLAKRALIAALPAPEDFSYSVR 431

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           +  ++ +++G +  A++ G  +AL D    M+              HVA I+ G++
Sbjct: 432 LVSEITESNGSSSMASVCGGCLALMDAGVPMQ-------------AHVAGIAMGLI 474


>gi|156093968|ref|XP_001613022.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148801896|gb|EDL43295.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 271

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 10/145 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R++ R+ N++R++ +      Y++ SC    G+T +L            I   K     A
Sbjct: 32  RINNRKNNEIRDMFIKLGSDGYSDASCFYSLGNTKILA----------LIYGPKPDSKNA 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            Y         R       G      + I+ ++   + SV+ L       I I C +IQ 
Sbjct: 82  TYDKGKVFLEIRSLNMNDDGANDESDENIKNLLIECVSSVILLDQYPQCSINIKCLIIQN 141

Query: 122 DGGTRTAAITGAWVALHDCLQHMED 146
           DGG  +A +T   +AL +    M D
Sbjct: 142 DGGCLSATLTCISLALTNAQIKMRD 166


>gi|311104446|ref|YP_003977299.1| polyribonucleotide nucleotidyltransferase [Achromobacter
           xylosoxidans A8]
 gi|310759135|gb|ADP14584.1| polyribonucleotide nucleotidyltransferase [Achromobacter
           xylosoxidans A8]
          Length = 720

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 31/207 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R IS+   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 320 RIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  R+L  ++         I I
Sbjct: 380 RFMMHYNMPPFATGE-------TGRIGVPKRREIGHGRLAKRSLIPLLPAPEDFQYTIRI 432

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             ++ +++G +  A++ G  +A+ D    ++D             HVA ++ G++     
Sbjct: 433 VSEITESNGSSSMASVCGGSLAMMDAGVPVKD-------------HVAGVAMGLILDGGK 479

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSG 197
              + D+   ED   D+D     T++G
Sbjct: 480 FAVLTDILGDEDHLGDMDFKVAGTENG 506


>gi|239826663|ref|YP_002949287.1| polynucleotide phosphorylase/polyadenylase [Geobacillus sp. WCH70]
 gi|259534128|sp|C5D9D5|PNP_GEOSW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|239806956|gb|ACS24021.1| 3' exoribonuclease [Geobacillus sp. WCH70]
          Length = 712

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 17/126 (13%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTG 71
           +++K A G+ LV++GDT +L TAT  ++     +N     +T  Y       G +P   G
Sbjct: 23  QLAKQANGAVLVRYGDTVVLNTATASKEA----KNVDFFPLTVNYEERLYAVGKIP---G 75

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
             +KRE   GR   ++    R+I R +R +         QI+     +  D     AA+ 
Sbjct: 76  GFIKRE---GRPSEKAILASRLIDRPIRPLFAEGFRNEVQIVSMVMSVDQDCSPEMAALF 132

Query: 132 GAWVAL 137
           GA +AL
Sbjct: 133 GASLAL 138


>gi|328553436|gb|AEB23928.1| polynucleotide phosphorylase/polyadenylase [Bacillus
           amyloliquefaciens TA208]
 gi|328911772|gb|AEB63368.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
           LL3]
          Length = 707

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 105/231 (45%), Gaps = 35/231 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWITAEY--GMLPRSTGNR 73
           T +++K A G+ +V++GDT +L+TAT  +E  P+        +    Y  G +P   G  
Sbjct: 21  TGQLAKQANGAVMVRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP---GGF 77

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
           +KRE   GR   ++    R+I R +R +         Q+I     +  +  +  AA+ G+
Sbjct: 78  IKRE---GRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEMAAMFGS 134

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD--LDYGEDSTIDVDANF 191
            +AL  C+  +             +G +A ++ G + G  I++  +D  E S    D N 
Sbjct: 135 SLAL--CVSDIP-----------FEGPIAGVTVGRIDGQFIINPTVDQLEKS----DINL 177

Query: 192 VMT---DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ++    D+ ++VE  G+ E     ++     +    + I  LI  Q+++++
Sbjct: 178 IVAGTKDAINMVEA-GADE---VPEEIMLEAIMFGHEEIKRLIAFQEEIVA 224


>gi|308173632|ref|YP_003920337.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
           DSM 7]
 gi|307606496|emb|CBI42867.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
           DSM 7]
          Length = 705

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 105/231 (45%), Gaps = 35/231 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWITAEY--GMLPRSTGNR 73
           T +++K A G+ +V++GDT +L+TAT  +E  P+        +    Y  G +P   G  
Sbjct: 21  TGQLAKQANGAVMVRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP---GGF 77

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
           +KRE   GR   ++    R+I R +R +         Q+I     +  +  +  AA+ G+
Sbjct: 78  IKRE---GRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEMAAMFGS 134

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD--LDYGEDSTIDVDANF 191
            +AL  C+  +             +G +A ++ G + G  I++  +D  E S    D N 
Sbjct: 135 SLAL--CVSDIP-----------FEGPIAGVTVGRIDGQFIINPTVDQLEKS----DINL 177

Query: 192 VMT---DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ++    D+ ++VE  G+ E     ++     +    + I  LI  Q+++++
Sbjct: 178 IVAGTKDAINMVEA-GADE---VPEEIMLEAIMFGHEEIKRLIAFQEEIVA 224


>gi|295399860|ref|ZP_06809841.1| polyribonucleotide nucleotidyltransferase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978263|gb|EFG53860.1| polyribonucleotide nucleotidyltransferase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 712

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 17/125 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72
           ++K A G+ LV++GDT +L+TAT  ++     +N     +T  Y       G +P   G 
Sbjct: 24  LAKQANGAVLVRYGDTVVLSTATASKEA----KNVDFFPLTVNYEERLYAVGKIP---GG 76

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR   ++    R+I R +R +         QI+     +  D     AA+ G
Sbjct: 77  FIKRE---GRPSEKAILASRLIDRPIRPLFSEGFRNEVQIVSMVMSVDQDCSPEMAALLG 133

Query: 133 AWVAL 137
           + +AL
Sbjct: 134 SSLAL 138


>gi|167836045|ref|ZP_02462928.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           thailandensis MSMB43]
          Length = 706

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 315 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 374

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL + +  +      I +
Sbjct: 375 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRV 427

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 428 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 470


>gi|322792608|gb|EFZ16508.1| hypothetical protein SINV_11514 [Solenopsis invicta]
          Length = 282

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  N+ R I L   +   A+GS  ++ G+T ++ +     ++P        G +  
Sbjct: 37  RHDGRSHNEFRNIFLKTGIVSQAKGSAYIEIGNTKIICSVFDPREIPNKTGYCVQGELFC 96

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           E+   P S      R+    +Q    +E   ++ RAL   V L    + Q+ +   VI  
Sbjct: 97  EFKFAPFS-----HRKRKLHQQDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVID- 150

Query: 122 DGGT 125
           +GG+
Sbjct: 151 NGGS 154


>gi|115352342|ref|YP_774181.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ambifaria
           AMMD]
 gi|172061213|ref|YP_001808865.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ambifaria
           MC40-6]
 gi|122322637|sp|Q0BDC6|PNP_BURCM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702626|sp|B1YTR1|PNP_BURA4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|115282330|gb|ABI87847.1| 3' exoribonuclease [Burkholderia ambifaria AMMD]
 gi|171993730|gb|ACB64649.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
           MC40-6]
          Length = 714

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G  +  +R + + L S  +        I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEF----GYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477


>gi|319778373|ref|YP_004129286.1| Polyribonucleotide nucleotidyltransferase [Taylorella equigenitalis
           MCE9]
 gi|317108397|gb|ADU91143.1| Polyribonucleotide nucleotidyltransferase [Taylorella equigenitalis
           MCE9]
          Length = 733

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59
           R+ GR    +R IS+   V     GS L   G+T  L  ATL  K    I ++  G +  
Sbjct: 320 RIDGRDTRSVRPISIRLGVLPRTHGSALFTRGETQALVIATLGTKQDEQIVDSVMGEVRE 379

Query: 60  --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +         I +  +
Sbjct: 380 HFMLHYNMPPFATGEVGRFGSPKRREIGHG----RLAKRALIATLPNQDDFQYTIRLVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A++ G  +A+ D    +ED             HVA ++ G++
Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPVED-------------HVAGVAMGLI 474


>gi|114332122|ref|YP_748344.1| polynucleotide phosphorylase/polyadenylase [Nitrosomonas eutropha
           C91]
 gi|122313196|sp|Q0AE53|PNP_NITEC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|114309136|gb|ABI60379.1| 3' exoribonuclease [Nitrosomonas eutropha C91]
          Length = 705

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R I++   V     GS L   G+T  L   TL     E+K+     +   
Sbjct: 315 RIDGRGTRTVRPITIRHGVLPRTHGSALFTRGETQALVVTTLGTARDEQKIDALQGDYSE 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQII 113
            ++   Y M P +TG        +GR G  + +EI   R+  RAL +V+         + 
Sbjct: 375 RFML-HYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALLAVLPPVEEFGYAMR 426

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           +  +V +++G +  A++ G  +AL D                 LK HVA I+ G++
Sbjct: 427 VVSEVTESNGSSSMASVCGGCLALMDA-------------GAPLKAHVAGIAMGLI 469


>gi|330685657|gb|EGG97298.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis VCU121]
          Length = 699

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 96/230 (41%), Gaps = 35/230 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T +++K A G+ LV++GDT +L+TAT   K P   R+     +T  Y       G +P  
Sbjct: 21  TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   KRE   GR G  +    R+I R +R +         QI+        D     AA
Sbjct: 75  -GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNIVLSADPDCSPEMAA 130

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ +AL      + D            G +A ++ G + G  +++    E     +D 
Sbjct: 131 MIGSSMAL-----SVSDIP--------FLGPIAGVNVGYVDGKYVINPTVAEKEVSRLDL 177

Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 D+ ++VE  G++E    ++      +    D I  L+  Q+++I
Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITESEMLEAIFFGHDEIKRLVAFQQEII 223


>gi|312111628|ref|YP_003989944.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y4.1MC1]
 gi|311216729|gb|ADP75333.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y4.1MC1]
          Length = 712

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 17/125 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72
           ++K A G+ LV++GDT +L+TAT  ++     +N     +T  Y       G +P   G 
Sbjct: 24  LAKQANGAVLVRYGDTVVLSTATASKEA----KNVDFFPLTVNYEERLYAVGKIP---GG 76

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR   ++    R+I R +R +         QI+     +  D     AA+ G
Sbjct: 77  FIKRE---GRPSEKAILASRLIDRPIRPLFSEGFRNEVQIVSMVMSVDQDCSPEMAALLG 133

Query: 133 AWVAL 137
           + +AL
Sbjct: 134 SSLAL 138


>gi|237841089|ref|XP_002369842.1| 3' exoribonuclease, putative [Toxoplasma gondii ME49]
 gi|211967506|gb|EEB02702.1| 3' exoribonuclease, putative [Toxoplasma gondii ME49]
 gi|221483644|gb|EEE21956.1| 3' exoribonuclease, putative [Toxoplasma gondii GT1]
          Length = 303

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 7/138 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  +MR + +       A GS  V  G T L   A    +  M   +   G I  
Sbjct: 47  RHDGRRFEEMRAMCMQTHSLAAAAGSAFVSVGKTKL-NCAVYGPRPNMKHASQDRGSINL 105

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           E+   P +T     ++A S R    +  +  ++ +AL +VV L       I +   V++ 
Sbjct: 106 EFRFAPFAT---TGKDACSERD---TAHLTTLLHQALNAVVRLDLYAKSTIAVSVLVLED 159

Query: 122 DGGTRTAAITGAWVALHD 139
           DGG  +AA+T   +AL D
Sbjct: 160 DGGLISAALTCIGLALAD 177


>gi|327262753|ref|XP_003216188.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Anolis carolinensis]
          Length = 765

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 38/200 (19%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++++A+GS +V+ GDT ++ TA  + K      +P+ +   +     A  G +P    N
Sbjct: 42  KLARFADGSAVVQLGDTSVMVTAVSKTKPSPSQFMPLVVDYRQKA---AAAGRIPT---N 95

Query: 73  RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTA 128
            ++RE      G   +EI   R+I R++R +         QI+  C+++  DG       
Sbjct: 96  YLRREL-----GSTDKEILTSRVIDRSIRPLFPAGYYYDTQIL--CNLLAVDGVNDPEVL 148

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AI GA  AL               LS +   G + A+  G++ G  +V+    E S+  +
Sbjct: 149 AINGASAAL--------------TLSDIPWNGPIGAVRVGLIDGEVVVNPTRKEMSSSTL 194

Query: 188 DANFVMTDSGHIVEVQGSAE 207
           D          +V ++ +AE
Sbjct: 195 DLIVSSAPRSQVVMLEAAAE 214


>gi|256425469|ref|YP_003126122.1| polyribonucleotide nucleotidyltransferase [Chitinophaga pinensis
           DSM 2588]
 gi|256040377|gb|ACU63921.1| Polyribonucleotide nucleotidyltransferase [Chitinophaga pinensis
           DSM 2588]
          Length = 793

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 22/174 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +RL GR  +Q+R +++   +     GS L   G+T  LTT TL    +E +      +K+
Sbjct: 317 VRLDGRSLDQVRPLAMETDILPSPHGSALFTRGETQSLTTVTLGTPDDELLSESAATSKY 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG          R+ G       +  R+L+ ++  S   +  + +  
Sbjct: 377 TKFILHYNFPPFSTGEVKPMRGPGRREVGHGN----LAMRSLKQMMPGSEY-AYTVRVVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           D+++++G +  A +    +AL D                 L  HV+ ++ G++ 
Sbjct: 432 DILESNGSSSMATVCAGSLALMDA-------------GVPLPKHVSGVAMGLIS 472


>gi|325127858|gb|EGC50764.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           N1568]
          Length = 706

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|307297863|ref|ZP_07577669.1| polyribonucleotide nucleotidyltransferase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306917123|gb|EFN47505.1| polyribonucleotide nucleotidyltransferase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 730

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 33/179 (18%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT----ATLEEKVPMWIRNTKH 56
           +R+ GR+ N++R I++   +   A GS L   G+T  L      AT++E++   +     
Sbjct: 322 VRMDGRKHNEIRPINIELDLLPRAHGSALFTRGETQSLGIVTLGATMDEQIVDTMFEEGS 381

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSR 110
                 Y   P STG  VKR    GR         R IG      R+L+++V        
Sbjct: 382 KSFMLHYNFPPFSTGE-VKRLRGPGR---------REIGHGHLAERSLKNIVPNGESFPY 431

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            I +  +V++++G +  A +    ++L      ME              HVA ++ GM+
Sbjct: 432 TIRVVSEVLESNGSSSMATVCSGSLSLMAAGVPMEK-------------HVAGVAMGMI 477



 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 38/231 (16%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTG 71
           +++K A+G+ ++++ D+ LLTT    E+    +  T    +T EY       G +P   G
Sbjct: 21  KMAKQADGAVVLRYADSVLLTTVNGNEQA---VPGTDFLPLTVEYQEKFYAAGKIP---G 74

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
             +KRE+   R    +    R+I R +R +         Q+I+       D       I 
Sbjct: 75  GFLKRES---RPSDNAVLSARIIDRPIRPLFPDGMRNEIQVIVTVLSADPDNPPDIWGIM 131

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIV--DLDYGEDSTIDVD 188
            + + L+              +S +  +G VA +  G + G  +V    D  E S +D+ 
Sbjct: 132 ASSLVLN--------------ISPIPFEGIVAGVQVGYVDGKYVVFPSADELERSELDI- 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
              V      +  V+G A+    S++     L  A + I  L+  QK++IS
Sbjct: 177 --VVAGTEDAVAMVEGEAKEV--SEEVMVGALEAAHEAIKSLVAFQKEIIS 223


>gi|221194578|ref|ZP_03567635.1| polyribonucleotide nucleotidyltransferase [Atopobium rimae ATCC
           49626]
 gi|221185482|gb|EEE17872.1| polyribonucleotide nucleotidyltransferase [Atopobium rimae ATCC
           49626]
          Length = 733

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 15/125 (12%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGNR 73
           ++K A G+C+VK GD+ +L TA + ++       P+ +      +I   Y  + R  G  
Sbjct: 22  LAKQATGACVVKCGDSTVLLTAVVSKERKDYDFFPLTV-----DFIEKMYA-VGRIPGGY 75

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
           +KREA   R   ++  I RMI R LR           QI+    V        T ++ GA
Sbjct: 76  LKREA---RPSEKATLIARMIDRPLRPSFPEGFRNEVQIVATSLVADQINAVDTISVMGA 132

Query: 134 WVALH 138
             ALH
Sbjct: 133 SAALH 137


>gi|150021487|ref|YP_001306841.1| polynucleotide phosphorylase/polyadenylase [Thermosipho
           melanesiensis BI429]
 gi|187611329|sp|A6LNF5|PNP_THEM4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|149794008|gb|ABR31456.1| Polyribonucleotide nucleotidyltransferase [Thermosipho
           melanesiensis BI429]
          Length = 699

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 38/230 (16%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTG 71
           +V+K + G+  V+FGD+ +L TA + ++V   I       +T EY       G +P   G
Sbjct: 22  KVAKQSSGAAWVQFGDSVVLATANISDRV---IEGVDFVPLTVEYQEKFYAAGKIP---G 75

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
             +KRE   G+    +    R+I R +R +         Q+I+   V+  DG T    +T
Sbjct: 76  GFIKRE---GKPTESAILSARLIDRPIRPLFPKYLRNDVQLIV--TVLSVDGDT-PPDVT 129

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIV--DLDYGEDSTIDVD 188
           G + A           S     S++  +G VA +  G + G  ++    +  ++S +D+ 
Sbjct: 130 GIFAA-----------SLALNFSKIPFQGIVAGVRIGYVDGEFVIFPTEEQLKNSKLDI- 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
              V      I  V+G A+  T  ++     L +A + I  LI+ +++++
Sbjct: 178 --VVAGSKDAITMVEGEAKEVT--EEEMVQALMVAHEAIKKLIEFEEEIL 223


>gi|15676656|ref|NP_273800.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
           MC58]
 gi|81784821|sp|Q9K062|PNP_NEIMB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|7225988|gb|AAF41171.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           MC58]
          Length = 707

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 317 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 377 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 433 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 472


>gi|325203845|gb|ADY99298.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M01-240355]
          Length = 706

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|294670819|ref|ZP_06735675.1| hypothetical protein NEIELOOT_02522 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307306|gb|EFE48549.1| hypothetical protein NEIELOOT_02522 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 701

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R I++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALIAVLPEPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|326528505|dbj|BAJ93434.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 726

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 81/199 (40%), Gaps = 29/199 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR+ +++R +           GS L   GDT +L T TL         ++  G  T
Sbjct: 112 LRVDGRRLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPT 171

Query: 61  A----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S     KR  ++ R+ G       +  +AL +V+         + ++ 
Sbjct: 172 KRFMLHYSFPPFSINEVAKRGGLNRREVGHGT----LAEKALLAVLPPEGDFPYTVRVNS 227

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ +DG T  A++ G  +AL D                 ++ HVA +S G++       
Sbjct: 228 EVMASDGSTSMASVCGGSMALMDA-------------GIPVREHVAGVSVGLVS------ 268

Query: 177 LDYGEDSTIDVDANFVMTD 195
               + +T D+ +  ++TD
Sbjct: 269 --EADPTTGDISSYRILTD 285


>gi|325144204|gb|EGC66511.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M01-240013]
 gi|325206400|gb|ADZ01853.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M04-240196]
          Length = 706

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|237745432|ref|ZP_04575912.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
           HOxBLS]
 gi|229376783|gb|EEO26874.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
           HOxBLS]
          Length = 707

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 29/176 (16%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R I++   V     GS L   G+T  L  ATL      +K+   +     
Sbjct: 320 RIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTSRDNQKIDALMGEYSD 379

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQII 113
            ++   Y M P +TG        +GR G  + +EI   R+  RAL + +      S  I 
Sbjct: 380 AFMM-HYNMPPFATGE-------TGRVGTPKRREIGHGRLAKRALVACLPSQDEFSYSIR 431

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           +  ++++++G +  A++ G  +AL D                 +K HVA I+ G++
Sbjct: 432 LVSEIMESNGSSSMASVCGGSLALMDA-------------GVPVKTHVAGIAMGLI 474


>gi|255658262|ref|ZP_05403671.1| polyribonucleotide nucleotidyltransferase [Mitsuokella multacida
           DSM 20544]
 gi|260849574|gb|EEX69581.1| polyribonucleotide nucleotidyltransferase [Mitsuokella multacida
           DSM 20544]
          Length = 689

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 10/123 (8%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74
           +++K A G+ LV++GDT +L TAT      E V  +     +       G +P   G  +
Sbjct: 19  QLAKQANGAVLVRYGDTVVLVTATASAEPREGVDFFPLTVDYEEKMYAAGKIP---GGFI 75

Query: 75  KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
           KRE   GR    +    R+I R +R +         QI+     ++ D     AA+ GA 
Sbjct: 76  KRE---GRPSSDAILCARLIDRPIRPLFPKGFRNDVQIVATVLSVEQDNAPELAAMIGAS 132

Query: 135 VAL 137
            AL
Sbjct: 133 CAL 135


>gi|255569434|ref|XP_002525684.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
           communis]
 gi|223534984|gb|EEF36667.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
           communis]
          Length = 948

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 83/211 (39%), Gaps = 32/211 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R  GR  + +R I+    +   A GS L   G+T  L  ATL      +KV   +   + 
Sbjct: 450 RSDGRNADGIRPINSRCGLLPRAHGSALFTRGETQSLAVATLGDKQMAQKVDNLVDVDEF 509

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +  A S R+ G     +R +   L S  D        I ++ 
Sbjct: 510 KRFYLQYSFPPSSVGEVGRMGAPSRREIGHGMLAERALEPILPSEADF----PYTIRVES 565

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------ 170
            + +++G +  A++ G  +AL D                 +K  +A I+ GM+       
Sbjct: 566 TITESNGSSSMASVCGGCLALQDA-------------GVPVKCSIAGIAMGMVLDTEEFG 612

Query: 171 --GYPIV--DLDYGEDSTIDVDANFVMTDSG 197
             G P++  D+   ED++ D+D      + G
Sbjct: 613 GDGTPLILSDITGSEDASGDMDFKVAGNEDG 643


>gi|325140088|gb|EGC62617.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           CU385]
          Length = 706

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|220909628|ref|YP_002484939.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC
           7425]
 gi|254782716|sp|B8HXN3|PNP_CYAP4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219866239|gb|ACL46578.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7425]
          Length = 715

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 102/237 (43%), Gaps = 34/237 (14%)

Query: 12  REISLT-RRVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64
           R+I +T  R +  A G+ +++ GDT +L TAT        + +P+ +   +  +      
Sbjct: 13  RDIHITIGRFAPQAGGTVMIRSGDTAVLVTATRAAAREGIDFLPLLVDYEERLYAAG--- 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R  G  ++RE   GR   ++  I R+I R LR +         Q++     +     
Sbjct: 70  ---RIPGGFLRRE---GRPPEKATLISRLIDRPLRPLFPGWLRDDIQVVATTLSMDEQVP 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183
               A+TGA VA+               L+Q+   G +AA+  G++    I++  Y E  
Sbjct: 124 PDVLAVTGASVAVL--------------LAQIPFNGPMAAVRVGLVGDDFIINPTYSEIE 169

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             D+D     + +G +V V+  A +    +      ++   + + DLI+ Q+++++ 
Sbjct: 170 AGDLDLVVAGSPAG-VVMVEAGANQ--LPEQDVIEAIDFGYEAVRDLIRAQQELLTE 223


>gi|217976462|ref|YP_002360609.1| Polyribonucleotide nucleotidyltransferase [Methylocella silvestris
           BL2]
 gi|254782729|sp|B8EP09|PNP_METSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|217501838|gb|ACK49247.1| Polyribonucleotide nucleotidyltransferase [Methylocella silvestris
           BL2]
          Length = 714

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 20/179 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR    +R I     +   A GS L   G+T  L  ATL    +E+    +  T  
Sbjct: 315 VRIDGRDLKTVRPILAEVGILPRAHGSALFTRGETQALVVATLGTGEDEQFVDSLEGTYK 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSR 110
                 Y   P S G        +GR G      +R IG      RA+R ++  +A    
Sbjct: 375 ERFLLHYNFPPYSVGE-------TGRMGSPG---RREIGHGKLAWRAVRPMLPTAAEFPY 424

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            I I  ++ +++G +  A + G+ +AL D    ++  +    +  +L+G   A+   +L
Sbjct: 425 TIRIVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGERFAVLSDIL 483


>gi|292670908|ref|ZP_06604334.1| polyribonucleotide nucleotidyltransferase [Selenomonas noxia ATCC
           43541]
 gi|292647529|gb|EFF65501.1| polyribonucleotide nucleotidyltransferase [Selenomonas noxia ATCC
           43541]
          Length = 700

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 10/123 (8%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74
           +++K A G+ LV++GDT +L TAT      E V  +     +       G +P   G  +
Sbjct: 30  KMAKQANGAVLVRYGDTVVLVTATASSAPREGVDFFPLTVDYEEKMYAVGKIP---GGFI 86

Query: 75  KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
           KRE   GR    +    R+I R +R +         QI+     ++ D     AA+ GA 
Sbjct: 87  KRE---GRPSNDAILCARLIDRPIRPLFPDGFRNDVQIVATVLSVEQDNPPEIAAMIGAS 143

Query: 135 VAL 137
            AL
Sbjct: 144 CAL 146


>gi|193212209|ref|YP_001998162.1| polynucleotide phosphorylase/polyadenylase [Chlorobaculum parvum
           NCIB 8327]
 gi|226702632|sp|B3QM09|PNP_CHLP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|193085686|gb|ACF10962.1| Polyribonucleotide nucleotidyltransferase [Chlorobaculum parvum
           NCIB 8327]
          Length = 732

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 20/148 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR   Q+R IS+   +   A GS L   G+T  L T TL  K      +T    K  
Sbjct: 331 RLDGRTLEQVRPISIELGLIPRAHGSALFTRGETQALVTLTLGTKKDAQSVDTLTDDKDK 390

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111
                Y   P S G        +GR GG     +R IG      RA++ V+         
Sbjct: 391 RFMLHYNFPPFSVGE-------TGRVGGTG---RREIGHGNLAERAIKMVMPAEQEFPYT 440

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHD 139
           + +  D+++++G +  A++ G  +A  D
Sbjct: 441 VRLVSDILESNGSSSMASVCGGTLAAMD 468


>gi|68171419|ref|ZP_00544810.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|67999161|gb|EAM85820.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ehrlichia chaffeensis
           str. Sapulpa]
          Length = 554

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  +++R+I +   V   A GS L   G+T  L    L    +E++   +   +  
Sbjct: 77  RIDGRAFDEIRDIEIEVDVLPKAHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 136

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P + G      A   R+ G      ++  RA+R V+   +     I +  +
Sbjct: 137 NFLLHYNFPPYAVGESAALRAPGRREIGHG----KLAWRAIRYVLPEKSDFPYTIRVVSE 192

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + ++DG +  A + GA +AL D                 +K  VA I+ G++
Sbjct: 193 ITESDGSSSMATVCGASLALMDT-------------GVPIKSPVAGIAMGLI 231


>gi|258516323|ref|YP_003192545.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780028|gb|ACV63922.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 746

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 57/132 (43%), Gaps = 24/132 (18%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG----WITAEY-------GM 65
           T RV+K A G+ LV +GDT +L+TAT+        R  + G     +T EY       G 
Sbjct: 19  TGRVAKQAGGAVLVAYGDTVVLSTATMS-------RTLREGIDFFPLTVEYEERLYAVGR 71

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G  +KREA        S    R+I R++R +         QII     +  D   
Sbjct: 72  IP---GGFIKREARPSENAILS---CRLIDRSIRPLFPKGFRNETQIINTIMSVDQDHAP 125

Query: 126 RTAAITGAWVAL 137
             AA+ G   AL
Sbjct: 126 EMAAMIGTSAAL 137



 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 8/144 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR  +++R IS+   V     GS L   G T +L+  TL    EE++   +   + 
Sbjct: 322 IRMDGRALDEVRPISVEAGVLPRTHGSGLFTRGQTQILSVVTLGAISEEQILDGLGTEES 381

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG      +   R+ G       + GRAL  ++         I +  
Sbjct: 382 KRYMHHYNFPPFSTGETKMMRSPGRREIGHGA----LAGRALEPMIPGEEEFPYTIRVVS 437

Query: 117 DVIQADGGTRTAAITGAWVALHDC 140
           + ++++G T   ++ G+ +AL D 
Sbjct: 438 EALESNGSTSMGSVCGSTLALMDA 461


>gi|218282268|ref|ZP_03488567.1| hypothetical protein EUBIFOR_01149 [Eubacterium biforme DSM 3989]
 gi|218216736|gb|EEC90274.1| hypothetical protein EUBIFOR_01149 [Eubacterium biforme DSM 3989]
          Length = 713

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 89/227 (39%), Gaps = 26/227 (11%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           T  ++K A+G+ ++++GDT  L+TA      +E +  +             G +P   G 
Sbjct: 19  TGEIAKQADGAVIIRYGDTVTLSTACASNQAKEGIDFFPLTVSFEEKLYSVGKIP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            ++RE   GR    +    RMI R +R +         Q++     +  D     AA+ G
Sbjct: 76  FLRRE---GRPSEHATLTARMIDRPIRPLFAEGFRNEVQVVNTVLSVDQDASPEMAAMFG 132

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
           A +AL  C+  +              G +A    G + G  + +    +    D+D    
Sbjct: 133 ASLAL--CISDIP-----------FNGPIAGCKVGRINGELVANPTVAQMEESDIDLTVA 179

Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            T     +   G+ E    S++   A L    ++I  L   Q+++++
Sbjct: 180 GTAQALNMVEAGAKE---VSEEDMLAALMFGHEQIKKLCAFQEEIVA 223


>gi|187610328|sp|A1KT19|PNP_NEIMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|308388946|gb|ADO31266.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
           meningitidis alpha710]
 gi|325132007|gb|EGC54706.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M6190]
 gi|325137838|gb|EGC60413.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           ES14902]
          Length = 706

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|149182492|ref|ZP_01860966.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. SG-1]
 gi|148849823|gb|EDL63999.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. SG-1]
          Length = 706

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 81/177 (45%), Gaps = 30/177 (16%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++K A G+ ++++GDT +L+TAT  ++       P+ +   +  +     G +P   G 
Sbjct: 23  QLAKQANGAVMIRYGDTAVLSTATASKQPKPLDFFPLTVNYEERLYAV---GKIP---GG 76

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR   R+    R+I R +R +         Q+I     +  D  +  AA+ G
Sbjct: 77  FIKRE---GRPSERAVLTSRLIDRPIRPLFADGFRNEVQVISMVMSVDQDCSSEMAAMFG 133

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV--DLDYGEDSTIDV 187
           + +AL      + D           +G +A +  G++ G  I+  ++D  E S I++
Sbjct: 134 SSLAL-----TVSDIP--------FEGPIAGVQVGLIDGEFIINPNVDQLEKSEINL 177


>gi|157164996|ref|YP_001467328.1| polynucleotide phosphorylase/polyadenylase [Campylobacter concisus
           13826]
 gi|187470951|sp|A7ZEX0|PNP_CAMC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|112801842|gb|EAT99186.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Campylobacter
           concisus 13826]
          Length = 732

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 4/139 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGW 58
           +R  GR   ++R IS+   V   A GSCL   G T  L  ATL  +    M+   T+   
Sbjct: 343 IRADGRGLEEVRPISIETNVLPNAHGSCLFTRGQTQALVVATLGTDSDAQMYDILTEKAP 402

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  ++       G  V   +     G R      +  RAL   +DL++  + +++   ++
Sbjct: 403 LVEKFMFNYNFPGFSVGEASPLKAPGRRELGHGNLAKRALAPSIDLASPYTIRVV--SEI 460

Query: 119 IQADGGTRTAAITGAWVAL 137
           ++++G +  A++ G  +AL
Sbjct: 461 LESNGSSSMASVCGGSLAL 479


>gi|90422008|ref|YP_530378.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
           palustris BisB18]
 gi|122477503|sp|Q21C27|PNP_RHOPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|90104022|gb|ABD86059.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris BisB18]
          Length = 715

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 93/231 (40%), Gaps = 24/231 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I     V   A GS L   G+T  L   TL    +E+    +  T   
Sbjct: 316 RIDGRDSKTVRNIVAQVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDSLSGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G        +GR GG + +EI   ++  RA+  V+         + +
Sbjct: 376 TFLLHYNFPPYSVGE-------TGRMGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTLRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++ +++G +  A++ GA +AL D    ++  +    +  +L+G   A+   +L     
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLSDILG---- 484

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                 ED   D+D     T+ G I  +Q   + A  +++     L  AKD
Sbjct: 485 -----DEDHLGDMDFKVAGTEQG-ITSLQMDIKIAGITEEIMKVALGQAKD 529


>gi|196231533|ref|ZP_03130391.1| Polyribonucleotide nucleotidyltransferase [Chthoniobacter flavus
           Ellin428]
 gi|196224386|gb|EDY18898.1| Polyribonucleotide nucleotidyltransferase [Chthoniobacter flavus
           Ellin428]
          Length = 716

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 98/227 (43%), Gaps = 30/227 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           T +++K A+G+  V+ G+T +  +A    T++E    +     +    A  G  P   G 
Sbjct: 19  TGKLAKLADGAVTVRSGETIVFISAVSATTVKEGQDFFPLTVDYREKAAAVGKFP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--AAI 130
             KRE   GR   +     RM  R LR +     L   QII    ++ ADG        I
Sbjct: 76  YFKRE---GRPSEKEILTCRMTDRPLRPLFPKGYLYDTQII--GVLLSADGEVDPDILFI 130

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  AL      + D            G V A+  G + G  I +  + + +  D+D  
Sbjct: 131 NGASAAL-----MVSDIP--------FAGPVGAVRVGRVNGQFIANPTHSQMADSDLDLV 177

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +V  ++  ++ ++G+ +     ++ F A L+ A+  ++ ++ LQ+++
Sbjct: 178 YV-GNATDVIMIEGAGDEV--PEEQFIAALHFAQTEVSKIVALQQEL 221



 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 69/179 (38%), Gaps = 28/179 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R++S    +   + GS L + G+T  +  ATL    P        G+   
Sbjct: 314 RCDGRGLDQIRDLSAEVGLLPRSHGSALFQRGETQAVALATL---APADEAQELDGYTGG 370

Query: 62  E--------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
           E        Y   P S G   +  +   R+ G     +R +   +  V          I 
Sbjct: 371 ETTKRFILHYNFPPFSVGETGRTGSPGRREIGHGALAERSVEPVIPDVTKF----PYAIR 426

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           +  +V++++G T  A++    +AL D                 LK  VA ISCG++  +
Sbjct: 427 VSSEVMESNGSTSMASVCSGVLALLDA-------------GVPLKKSVAGISCGLVTEF 472


>gi|149236726|ref|XP_001524240.1| exosome complex exonuclease RRP41 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451775|gb|EDK46031.1| exosome complex exonuclease RRP41 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 244

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 78/187 (41%), Gaps = 23/187 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKY---AEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKH 56
           +R+ GR+ N++R      R++ +   ++GS  V+ G+T ++ T     E       N   
Sbjct: 12  LRIDGRRWNELRRFEC--RINTHPNSSDGSSYVEQGNTKVICTVIGPMEPTSRAQMNQDR 69

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
             +     +   ST  R KR     +   R  E++  + R    ++ L       I I+ 
Sbjct: 70  ANVEVNLTIANFSTFERKKR----SKTEKRLVELRTTLERTFEQLILLHLYPRTNITINV 125

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
            V+  DGG   A      +AL D    M D             +V++ISCG+    P++D
Sbjct: 126 QVLNQDGGMLAAVTNSITLALMDAGIAMYD-------------YVSSISCGLHDQSPLLD 172

Query: 177 LDYGEDS 183
           L+  E++
Sbjct: 173 LNNLEEN 179


>gi|121634554|ref|YP_974799.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
           FAM18]
 gi|120866260|emb|CAM10001.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
           meningitidis FAM18]
          Length = 711

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 321 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 380

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 381 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 436

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 437 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 476


>gi|2286200|gb|AAC50039.1| polynucleotide phosphorylase [Pisum sativum]
          Length = 897

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 84/211 (39%), Gaps = 32/211 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNT----KH 56
           R  GR   ++R I+ +  +   A GS L   G+T  L  ATL + K+   I N      +
Sbjct: 444 RSDGRTPKEIRPINSSCSILPRAHGSALFTRGETQALAVATLGDNKMAQRINNLIEVDDY 503

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P   G   +  A S R+ G     +R +   L S  D        I ++ 
Sbjct: 504 KRFYLQYSFPPSCVGEAGRIGAPSRREIGHGMLAERSLETILPSDNDF----PYTIRVES 559

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------ 170
            + +++G +  A++ G  +AL D                 +K  +A I+ G++       
Sbjct: 560 TITESNGSSSMASVCGGCLALQDA-------------GVPIKCSIAGIAMGLVLDTKEFG 606

Query: 171 --GYPIV--DLDYGEDSTIDVDANFVMTDSG 197
             G P++  D+   ED++ D+D      + G
Sbjct: 607 GDGTPLILSDITGSEDASGDMDFKVAGNEDG 637


>gi|304387933|ref|ZP_07370106.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           ATCC 13091]
 gi|304338030|gb|EFM04167.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           ATCC 13091]
          Length = 706

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|225025578|ref|ZP_03714770.1| hypothetical protein EIKCOROL_02480 [Eikenella corrodens ATCC
           23834]
 gi|224941616|gb|EEG22825.1| hypothetical protein EIKCOROL_02480 [Eikenella corrodens ATCC
           23834]
          Length = 701

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R I++   V     GS L   G+T  L  ATL  +    I +   G  T 
Sbjct: 316 RIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLGTQRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL  V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGECGRMGAPKRREIGHG----RLAKRALLGVLPSPEEFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|332970461|gb|EGK09453.1| polyribonucleotide nucleotidyltransferase [Kingella kingae ATCC
           23330]
          Length = 708

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTNVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|325688998|gb|EGD31006.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK115]
 gi|325695521|gb|EGD37421.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK150]
          Length = 733

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 31/229 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70
           T +V+K A GS +V++G++ +LT AT+ +K+      P+ +   +  +   +Y       
Sbjct: 19  TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR    +    R+I R +R +         Q+I        D   + AA+
Sbjct: 73  GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            G+ +AL      + D            G +A +  G + G  I++    +     ++  
Sbjct: 130 FGSSLAL-----SISDIP--------FNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELT 176

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
              T     +   G+ E    S+D     L    + + +LI  Q+++I+
Sbjct: 177 VAGTKEAINMVESGAKE---LSEDIMLEALLKGHEAVKELIAFQEEIIA 222


>gi|189499525|ref|YP_001958995.1| polynucleotide phosphorylase/polyadenylase [Chlorobium
           phaeobacteroides BS1]
 gi|226702633|sp|B3EMN6|PNP_CHLPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189494966|gb|ACE03514.1| Polyribonucleotide nucleotidyltransferase [Chlorobium
           phaeobacteroides BS1]
          Length = 734

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 22/149 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKH 56
           RL GR+  ++R IS+   +   A GS L   G+T  L   TL  K     +   + +T+ 
Sbjct: 332 RLDGRKLEEVRPISIELGLIPRAHGSALFTRGETQALVVLTLGTKKDAQMIDTLLDDTEK 391

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSR 110
            ++   Y   P S G        +GR GG     +R IG      RA++ VV   +    
Sbjct: 392 RFML-HYNFPPFSVGE-------TGRVGGVG---RREIGHGNLAERAVKKVVPSESEFPY 440

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHD 139
            I +  ++++++G +  A++ GA +A  D
Sbjct: 441 TIRLVSEILESNGSSSMASVCGATLAAMD 469


>gi|221504332|gb|EEE30007.1| 3' exoribonuclease, putative [Toxoplasma gondii VEG]
          Length = 303

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 7/138 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  +MR + +       A GS  V  G T L   A    +  M   +   G I  
Sbjct: 47  RHDGRRFEEMRAMCMQTHSLAAAAGSAFVSVGKTKL-NCAVYGPRPNMKHASQDRGSINL 105

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           E+   P +T     ++A S R    +  +  ++ +AL +VV L       I +   V++ 
Sbjct: 106 EFRFAPFAT---TGKDACSERD---TAHLTTLLHQALNAVVRLDLYAKSTIAVSVLVLED 159

Query: 122 DGGTRTAAITGAWVALHD 139
           DGG  +AA+T   +AL D
Sbjct: 160 DGGLISAALTCIGLALAD 177


>gi|88658296|ref|YP_507529.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia chaffeensis
           str. Arkansas]
 gi|123493143|sp|Q2GGA4|PNP_EHRCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|88599753|gb|ABD45222.1| polyribonucleotide nucleotidyltransferase [Ehrlichia chaffeensis
           str. Arkansas]
          Length = 796

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  +++R+I +   V   A GS L   G+T  L    L    +E++   +   +  
Sbjct: 319 RIDGRAFDEIRDIEIEVDVLPKAHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P + G      A   R+ G      ++  RA+R V+   +     I +  +
Sbjct: 379 NFLLHYNFPPYAVGESAALRAPGRREIGHG----KLAWRAIRYVLPEKSDFPYTIRVVSE 434

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           + ++DG +  A + GA +AL D 
Sbjct: 435 ITESDGSSSMATVCGASLALMDT 457


>gi|238926818|ref|ZP_04658578.1| polynucleotide phosphorylase/polyadenylase [Selenomonas flueggei
           ATCC 43531]
 gi|238885350|gb|EEQ48988.1| polynucleotide phosphorylase/polyadenylase [Selenomonas flueggei
           ATCC 43531]
          Length = 689

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 10/123 (8%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74
           +++K A G+ LV++GDT +L TAT      E V  +     +       G +P   G  +
Sbjct: 19  KMAKQANGAVLVRYGDTVVLVTATASKAPREGVDFFPLTVDYEEKMYAAGKIP---GGFI 75

Query: 75  KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
           KRE   GR    +    R+I R +R +         QI+     ++ D     AA+ GA 
Sbjct: 76  KRE---GRPSSDAVLCARLIDRPIRPLFPDGFRNDVQIVATVLSVEQDNPAEIAAMLGAS 132

Query: 135 VAL 137
            AL
Sbjct: 133 CAL 135


>gi|222055786|ref|YP_002538148.1| Polyribonucleotide nucleotidyltransferase [Geobacter sp. FRC-32]
 gi|257096693|sp|B9M1G5|PNP_GEOSF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|221565075|gb|ACM21047.1| Polyribonucleotide nucleotidyltransferase [Geobacter sp. FRC-32]
          Length = 696

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 10/144 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R+I+    +   A GS L   G+T  L  ATL     E+++      +K 
Sbjct: 312 RIDGRDTKTIRQITTEVGLLPRAHGSALFTRGETQALVVATLGTSIDEQRIDSLFGESKK 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++   Y   P S G    R A   R+ G       +  RAL  VV         I I  
Sbjct: 372 RFLL-HYNFPPFSVGETSFRLAPGRREIGHGM----LAERALARVVPKHESFPYTIRIVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDC 140
           D+++++G +  A++ G  +++ D 
Sbjct: 427 DILESNGSSSMASVCGGSMSMMDA 450


>gi|325266482|ref|ZP_08133159.1| polyribonucleotide nucleotidyltransferase [Kingella denitrificans
           ATCC 33394]
 gi|324981925|gb|EGC17560.1| polyribonucleotide nucleotidyltransferase [Kingella denitrificans
           ATCC 33394]
          Length = 705

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R I++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      +  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPKPEDFNYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|304436486|ref|ZP_07396460.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304370532|gb|EFM24183.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 690

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 10/123 (8%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74
           +++K A G+ LV++GDT +L TAT      E V  +     +       G +P   G  +
Sbjct: 19  KMAKQANGAVLVRYGDTVVLVTATASKAPREGVDFFPLTVDYEEKMYAAGKIP---GGFI 75

Query: 75  KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
           KRE   GR    +    R+I R +R +         QI+     ++ D     AA+ GA 
Sbjct: 76  KRE---GRPSSDAVLCARLIDRPIRPLFPDGFRNDVQIVATVLSVEQDNPPEIAAMFGAS 132

Query: 135 VAL 137
            AL
Sbjct: 133 CAL 135


>gi|329724343|gb|EGG60855.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis VCU144]
          Length = 701

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 98/232 (42%), Gaps = 35/232 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T +++K A G+ LV++GDT +L+TAT   K P   R+     +T  Y       G +P  
Sbjct: 21  TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   KRE   GR G  +    R+I R +R +         QI+        D     AA
Sbjct: 75  -GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEMAA 130

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ +AL      + D           +G +A ++ G + G  +++    +     +D 
Sbjct: 131 MIGSSMAL-----SVSDIP--------FQGPIAGVNVGYIDGKYVINPSVADKEISRLDL 177

Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 D+ ++VE  G++E    ++      +    + I  L+  Q+++I +
Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITESEMLEAIFFGHEEIKRLVAFQQEIIDH 225


>gi|261392873|emb|CAX50454.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase; PNPase; CAP87K) [Neisseria meningitidis
           8013]
          Length = 706

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|331000847|ref|ZP_08324493.1| polyribonucleotide nucleotidyltransferase [Parasutterella
           excrementihominis YIT 11859]
 gi|329570375|gb|EGG52108.1| polyribonucleotide nucleotidyltransferase [Parasutterella
           excrementihominis YIT 11859]
          Length = 735

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L   TL    +E++   +   +  
Sbjct: 333 RIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQALVVTTLGTKQDEQIVDGLTGEQRE 392

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL +V+         + +
Sbjct: 393 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALTAVLPNEEDFQYTMRV 445

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++ +++G +  A++ G  ++L D    ++D      +  + +G+  A+         +
Sbjct: 446 VSEICESNGSSSMASVCGGCLSLLDAGVPLKDFVAGVAMGLIKEGNKFAV---------L 496

Query: 175 VDLDYGEDSTIDVDANFVMTDSG 197
            D+   ED   D+D     TD G
Sbjct: 497 TDILGDEDHLGDMDFKVAGTDHG 519


>gi|218884634|ref|YP_002429016.1| exosome complex RNA-binding protein Rrp42 [Desulfurococcus
           kamchatkensis 1221n]
 gi|218766250|gb|ACL11649.1| Probable exosome complex exonuclease 2 [Desulfurococcus
           kamchatkensis 1221n]
          Length = 286

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 99/255 (38%), Gaps = 23/255 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR     R I +       A GS LVK G T ++    LE + P   R    G +  
Sbjct: 28  RIDGRGLTDYRPIEVILNPITKASGSSLVKLGGTQVIAGVKLELEEPFPDR-PGEGVLQV 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------II 113
               +P ++ +        G     + E+ R+I R+LR    V L AL          + 
Sbjct: 87  HAEFVPLASPS-----FEPGPPDENAIEVARVIDRSLRESKAVKLDALAIEPGKIVWSVY 141

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQV-------LKGHVAAIS 165
            D  ++   G      +  + +AL    +  +    N +++          +   VA ++
Sbjct: 142 TDIYLVDHQGNIIDTGMLASMLALATSRIPELIKGENGYKVDHTKYVGPLPINTLVATVT 201

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
            G+     IVD    E++ ID      + +SG I  +Q    +  FS+      + +A  
Sbjct: 202 MGIYNDVIIVDPLLEEEAVIDSFITIAIDESGRICGIQKRGMKG-FSRSVLDNTIEIALS 260

Query: 226 RIADLIKLQKDVISN 240
           +  +L+ L K +++N
Sbjct: 261 KGRELVDLMKKILNN 275


>gi|27467869|ref|NP_764506.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis ATCC 12228]
 gi|57866764|ref|YP_188423.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis RP62A]
 gi|251810705|ref|ZP_04825178.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282876294|ref|ZP_06285161.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis SK135]
 gi|293366762|ref|ZP_06613438.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|81674891|sp|Q5HPR7|PNP_STAEQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81843823|sp|Q8CST1|PNP_STAES RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|27315414|gb|AAO04548.1|AE016747_45 polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis ATCC 12228]
 gi|57637422|gb|AAW54210.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis RP62A]
 gi|251805865|gb|EES58522.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295319|gb|EFA87846.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis SK135]
 gi|291319063|gb|EFE59433.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329736337|gb|EGG72609.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis VCU028]
 gi|329736660|gb|EGG72926.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis VCU045]
          Length = 701

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 98/232 (42%), Gaps = 35/232 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T +++K A G+ LV++GDT +L+TAT   K P   R+     +T  Y       G +P  
Sbjct: 21  TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   KRE   GR G  +    R+I R +R +         QI+        D     AA
Sbjct: 75  -GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEMAA 130

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ +AL      + D           +G +A ++ G + G  +++    +     +D 
Sbjct: 131 MIGSSMAL-----SVSDIP--------FQGPIAGVNVGYIDGKYVINPSVADKEISRLDL 177

Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 D+ ++VE  G++E    ++      +    + I  L+  Q+++I +
Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITESEMLEAIFFGHEEIKRLVAFQQEIIDH 225


>gi|303257193|ref|ZP_07343207.1| polyribonucleotide nucleotidyltransferase [Burkholderiales
           bacterium 1_1_47]
 gi|302860684|gb|EFL83761.1| polyribonucleotide nucleotidyltransferase [Burkholderiales
           bacterium 1_1_47]
          Length = 724

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L   TL    +E++   +   +  
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQALVVTTLGTKQDEQIVDGLTGEQRE 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL +V+         + +
Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALTAVLPNEEDFQYTMRV 434

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++ +++G +  A++ G  ++L D    ++D      +  + +G+  A+         +
Sbjct: 435 VSEICESNGSSSMASVCGGCLSLLDAGVPLKDFVAGVAMGLIKEGNKFAV---------L 485

Query: 175 VDLDYGEDSTIDVDANFVMTDSG 197
            D+   ED   D+D     TD G
Sbjct: 486 TDILGDEDHLGDMDFKVAGTDHG 508


>gi|296223817|ref|XP_002757788.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial [Callithrix jacchus]
          Length = 784

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 38/200 (19%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++++A+GS +V+ GDT ++ T   + K      +P+ +   +     A  G +P    N
Sbjct: 62  KLARFADGSAVVQSGDTAVMVTVVSKTKPSPSQFMPLVVDYRQKA---AAAGRIPT---N 115

Query: 73  RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128
            ++RE      G   +EI   R+I R++R +         Q++  C+++  DG       
Sbjct: 116 YLRREI-----GTSDKEILTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEPDVL 168

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AI GA VAL               LS +   G V A+  GM+ G  +V+    E S+  +
Sbjct: 169 AINGASVAL--------------SLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTL 214

Query: 188 DANFVMTDSGHIVEVQGSAE 207
           +          IV ++ SAE
Sbjct: 215 NLVVAGAPKSQIVMLEASAE 234


>gi|262197030|ref|YP_003268239.1| polyribonucleotide nucleotidyltransferase [Haliangium ochraceum DSM
           14365]
 gi|262080377|gb|ACY16346.1| polyribonucleotide nucleotidyltransferase [Haliangium ochraceum DSM
           14365]
          Length = 711

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 10/144 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR  +++R IS    +   A GS L   G+T  L +AT+     E+K+   +   + 
Sbjct: 321 RIDGRAYDEIRAISCEVGILPSAHGSALFTRGETQALVSATMGTRYDEQKLDTLLGGMQK 380

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            +    Y   P  TG      + S R+ G     +R I + +    D        + +  
Sbjct: 381 PFFL-HYNFPPFCTGEAKPIRSTSRRELGHGNLAERSIAQVMPEREDF----PYTVRVVS 435

Query: 117 DVIQADGGTRTAAITGAWVALHDC 140
           ++++++G +  A++ GA ++L D 
Sbjct: 436 EILESNGSSSMASVCGASLSLMDA 459


>gi|328950321|ref|YP_004367656.1| Polyribonucleotide nucleotidyltransferase [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450645|gb|AEB11546.1| Polyribonucleotide nucleotidyltransferase [Marinithermus
           hydrothermalis DSM 14884]
          Length = 722

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 82/205 (40%), Gaps = 26/205 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R  GR    +R+I +   V   A GS +   G+T +L T TL    +E++   +   +  
Sbjct: 333 RADGRGPTDIRDIWIEVDVLPRAHGSAIFTRGETQVLGTVTLGTGRDEQIIDDLGIDESD 392

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +    S R+ G       +  RALR V+         I I  D
Sbjct: 393 PFLVHYNFPPYSTGEVKRLRGTSRREVGHGN----LAKRALRPVLPDKDAFPYTIRIVGD 448

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           V++++G +  A      +AL D                 +K  VA I+ G++    G P+
Sbjct: 449 VLESNGSSSMATTCAGCLALMDA-------------GVPIKKPVAGIAMGLVMPETGEPV 495

Query: 175 V--DLDYGEDSTIDVDANFVMTDSG 197
           +  D+   ED+  D+D     T  G
Sbjct: 496 ILTDILGMEDALGDMDFKVTGTRDG 520


>gi|119489572|ref|ZP_01622332.1| polyribonucleotide nucleotidyltransferase [Lyngbya sp. PCC 8106]
 gi|119454484|gb|EAW35632.1| polyribonucleotide nucleotidyltransferase [Lyngbya sp. PCC 8106]
          Length = 719

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 33/225 (14%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGNR 73
           ++  A G+ L++ GDT +L TAT  E       +P+ +   +  +         R  G  
Sbjct: 22  LAPQAGGAVLIESGDTSVLVTATRAEGRPGIDFLPLLVDYEERLYAGG------RIPGGF 75

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
           ++RE   GR   R     R+I R LR ++        QI+     +         A+TGA
Sbjct: 76  LRRE---GRPPDRVTLTSRLIDRPLRPLIPGWIRDDIQIVATTLSMDEQVPPDVLAVTGA 132

Query: 134 WVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
            VA+               ++Q+   G +AA+  G+L    I++  Y E    D+D    
Sbjct: 133 SVAV--------------VMAQIPFYGPMAAVRVGLLGDDFIINPTYREVRNGDLDLVVA 178

Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            +  G +V V+  A +    +      ++   + + DLIK Q+++
Sbjct: 179 GSPEG-VVMVEAGANQ--LPEQDIIEAIDFGYEAVCDLIKAQQEI 220


>gi|242242557|ref|ZP_04797002.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis W23144]
 gi|242233984|gb|EES36296.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis W23144]
 gi|319401436|gb|EFV89646.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis FRI909]
          Length = 701

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 98/232 (42%), Gaps = 35/232 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T +++K A G+ LV++GDT +L+TAT   K P   R+     +T  Y       G +P  
Sbjct: 21  TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   KRE   GR G  +    R+I R +R +         QI+        D     AA
Sbjct: 75  -GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEMAA 130

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ +AL      + D           +G +A ++ G + G  +++    +     +D 
Sbjct: 131 MIGSSMAL-----SVSDIP--------FQGPIAGVNVGYIDGKYVINPSVADKEISRLDL 177

Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 D+ ++VE  G++E    ++      +    + I  L+  Q+++I +
Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITESEMLEAIFFGHEEIKRLVAFQQEIIDH 225


>gi|222100220|ref|YP_002534788.1| Polyribonucleotide nucleotidyltransferase [Thermotoga neapolitana
           DSM 4359]
 gi|254782743|sp|B9K8Y9|PNP_THENN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|221572610|gb|ACM23422.1| Polyribonucleotide nucleotidyltransferase [Thermotoga neapolitana
           DSM 4359]
          Length = 707

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 34/230 (14%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTG 71
           +V+K + G+ LV+FGDT +L TA + +KV   I       +T E+       G +P   G
Sbjct: 19  KVAKQSSGAVLVRFGDTAVLATANISDKV---IEGIDFVPLTVEFQERFYAAGKIP---G 72

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
             +KRE   G+    +    R+I R +R +         Q+I+   V+ AD       + 
Sbjct: 73  GFIKRE---GKPSESAILSARLIDRPIRPLFPKKLRNEIQVIV--TVLSADPNVPPDVVG 127

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
              V+L               +S++  +G VA I  G   G   +     ED    +   
Sbjct: 128 IFAVSL------------ALNVSKIPFEGIVAGIRIGYRDGQ-FIAFPTEEDIEKGLMDI 174

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            V      +  V+G A+    S++     L  A   I +L+  Q++++S 
Sbjct: 175 TVAGTKDAVTMVEGEAKEV--SEEDMVKALRFAHSVIKELVDFQEEILSE 222


>gi|21228726|ref|NP_634648.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina mazei
           Go1]
 gi|29336794|sp|Q8PTT7|ECX2_METMA RecName: Full=Probable exosome complex exonuclease 2
 gi|20907235|gb|AAM32320.1| Ribonuclease [Methanosarcina mazei Go1]
          Length = 266

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 90/237 (37%), Gaps = 15/237 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR     RE+ L   V   AEGS  V  G+T +L    L+   P +  +   G I  
Sbjct: 25  RQDGRGFKDFRELKLETNVISKAEGSAKVTLGNTQVLVGVKLQTGTP-FPDSQDEGVIIT 83

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQ--II 113
              + P ++      E   G     + E+ R++ R +R    +D+  L    G     + 
Sbjct: 84  NLELNPIAS-----PEFEPGPPREDAIEMARVVDRGIRESGAIDIKKLCITVGESVWIVF 138

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID  ++  DG    A+   A  AL   +   E       +   +K     I+   +    
Sbjct: 139 IDVHILNNDGNIIDASCLAAIAALMTTMVPNEQQGLGENVPLAMKEMPVGITLAKIGSKL 198

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           +VD    E++  +     V +  G +  +Q        ++   F  +++A ++ A++
Sbjct: 199 MVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMGP-VPLTEAELFEAIDMAIEKAAEI 254


>gi|312796906|ref|YP_004029828.1| Polyribonucleotide nucleotidyltransferase / Polynucleotide
           adenylyltransferase [Burkholderia rhizoxinica HKI 454]
 gi|312168681|emb|CBW75684.1| Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) /
           Polynucleotide adenylyltransferase (EC 2.7.7.19)
           [Burkholderia rhizoxinica HKI 454]
          Length = 768

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L  ATL    +E++   I      
Sbjct: 366 RIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQALVVATLGTKGDEQIIDAIEGEYRE 425

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  R+L   +         I +
Sbjct: 426 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRSLVPCLPGDDEFGYTIRV 478

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 479 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 521


>gi|320165922|gb|EFW42821.1| exosome component Rrp46 [Capsaspora owczarzaki ATCC 30864]
          Length = 227

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 94/241 (39%), Gaps = 35/241 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+RE+S+   V   A+GS      DT  LT        P  ++++K      
Sbjct: 4   RADGRMPNQLRELSIEHAVLSRADGSSRFSQRDTSALTAV----YGPAEVKSSKE----- 54

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
              +L ++T   V R   +G  G      + ++ +AL  V+  +A     I +   V+  
Sbjct: 55  ---LLDKATVQTVFRPK-TGLAGVDDHVCEAILRQALEPVIQRTANPRTSITVIVQVMHD 110

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-------I 174
           DG     A+  A +AL D             +S VL    AA++C  L           +
Sbjct: 111 DGALLACALNSASMALIDA---------GVPMSAVL----AAVTCAWLPAADGSSERRLL 157

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           +D    E +     A F    +    E+  S+     + D +F  + +A+   A+++   
Sbjct: 158 LDPTLEEQTAATSIATFAFESTNQ--EIVFSSTEGQLTVDEYFYTIEMAQKAAANVLAFM 215

Query: 235 K 235
           +
Sbjct: 216 R 216


>gi|310827652|ref|YP_003960009.1| hypothetical protein ELI_2063 [Eubacterium limosum KIST612]
 gi|308739386|gb|ADO37046.1| hypothetical protein ELI_2063 [Eubacterium limosum KIST612]
          Length = 692

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 43/227 (18%), Positives = 94/227 (41%), Gaps = 32/227 (14%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           V++ A+GS ++++G+T +L  A   +K        P+ +   +  +     G +P   G 
Sbjct: 20  VAQLAKGSAMIRYGETSVLAIAAASKKPREGMDFFPLSVDYEEKQYAV---GKIP---GG 73

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR   ++    R+I R +R +         Q++     ++ D     AA+ G
Sbjct: 74  FLKRE---GRPSEKAILNSRLIDRPIRPLFPKGFRNDVQVVTTVMSVEQDNAPEIAAMIG 130

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
           A +AL      + D            G   +++ G++ G  I++    +    D+     
Sbjct: 131 ASIAL-----SISDIP--------FDGPTGSVAVGLIDGEFILNPTEAQREVSDLSLTVA 177

Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            T    ++   G+ E    S++     +  A + I  ++  Q+++++
Sbjct: 178 GTKDAIMMVEAGANE---VSEETMLEAILFAHEEIKKIVAFQEEIVA 221


>gi|322695534|gb|EFY87340.1| exosome complex exonuclease RRP41 [Metarhizium acridum CQMa 102]
          Length = 291

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 88/226 (38%), Gaps = 33/226 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGW- 58
           +R+ GR+ N++R +    R    A+GS   + G T ++   T   E+    ++  + G  
Sbjct: 13  LRVDGRRWNELRRLHAQIRTQDAADGSSYFEMGHTKVMCVVTGPSEQQQAQVQAQRRGAQ 72

Query: 59  -------------ITAEYGMLPRSTGNRVKREAVSGRQ-----------GGRSQEIQRMI 94
                        + A +  + R    R  +E   GR+           G R+QEI+  I
Sbjct: 73  ASGRDAASIIVNVVIAGFSSVDRKKRGRNDKEG--GREIEHRALTWRGYGRRTQEIEITI 130

Query: 95  GRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS 154
            +AL S V         I +   V+  DG    A I  A +A+ D    M D      ++
Sbjct: 131 AKALSSTVHTHLFPHSSITVSLHVLSQDGSLLAALINAATLAVIDAGIPMTD-----YIA 185

Query: 155 QVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIV 200
               G  ++ + G     P++DL+  E+  +       + DS  +V
Sbjct: 186 ACTAGSTSSYAAGDDSADPLLDLNNQEEQELPFLTVASLGDSDRVV 231


>gi|20090627|ref|NP_616702.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina
           acetivorans C2A]
 gi|29336812|sp|Q8TGX5|ECX2_METAC RecName: Full=Probable exosome complex exonuclease 2
 gi|19915669|gb|AAM05182.1| tRNA nucleotidyltransferase [Methanosarcina acetivorans C2A]
          Length = 266

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 91/237 (38%), Gaps = 15/237 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR     R++ L   V   AEGS  V  G+T +L    L+   P +  +   G I  
Sbjct: 25  RQDGRGFKDFRDLKLETNVIVKAEGSAKVTLGNTQVLVGVKLQTGTP-FPDSQDEGVIIT 83

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQ--II 113
              + P ++      E   G     + E+ R++ R +R    +D+  L    G     + 
Sbjct: 84  NLELNPIAS-----PEFEPGPPREEAIEMARVVDRGIRESGAIDIKKLCITVGESVWIVF 138

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID  V+  DG    A+   A  AL   +   E       +   +K     I+   +    
Sbjct: 139 IDVHVLNDDGNIIDASCLAAIAALMTTMVPNEQQGLGEDVPLAMKEMPVGITIAKIGSKL 198

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           +VD    E++  +     V +  G +  +Q     +  ++   F  ++LA ++ A+L
Sbjct: 199 MVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMG-ISPLTEAELFEAIDLALEKAAEL 254


>gi|254669727|emb|CBA03893.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           alpha153]
          Length = 706

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|254804638|ref|YP_003082859.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           alpha14]
 gi|254668180|emb|CBA04880.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           alpha14]
          Length = 706

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|225709136|gb|ACO10414.1| Exosome complex exonuclease RRP41 [Caligus rogercresseyi]
          Length = 246

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 96/232 (41%), Gaps = 32/232 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKY---AEGSCLVKFGDTHLLTTATLEEKVPMW-----IR 52
           +RL GR+ +++R +    R+  +   A+GS  ++ G+T +L  A    + P         
Sbjct: 9   LRLDGRKSDELRRLRC--RLGAFSWSADGSAYLEMGNTKVLA-AVYGPREPRGGSSGDNS 65

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
           N +   +  ++     ST  R +R+    R   RS E+   + +   + +        QI
Sbjct: 66  NKEEAILNVQFSSAAFSTAERKQRQ----RGDKRSLEMAAHLKQTFAACIQTELYPRSQI 121

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            I  +V+Q DGG   A++  A +AL                   L+ +V A S  ++   
Sbjct: 122 DIFVEVLQTDGGHYCASVNAATLAL-------------IHAGIPLRDYVCACSASLIKET 168

Query: 173 PIVDLDYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           P++D+   E +    +     +  SG IV ++ S     F  DH   +++ A
Sbjct: 169 PLLDISMLESNLGGPELILAALPKSGEIVLLEMSQR---FHMDHLEKVIDEA 217


>gi|329120747|ref|ZP_08249409.1| polyribonucleotide nucleotidyltransferase [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327460544|gb|EGF06880.1| polyribonucleotide nucleotidyltransferase [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 701

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R I++   V     GS L   G+T  L   TL  +    I +   G  T 
Sbjct: 316 RIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVTTLGTQRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGECGRMGAPKRREIGHG----RLAKRALLAVLPEPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|325142036|gb|EGC64468.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           961-5945]
 gi|325197978|gb|ADY93434.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           G2136]
          Length = 706

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|325136018|gb|EGC58628.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M0579]
 gi|325202445|gb|ADY97899.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M01-240149]
 gi|325207803|gb|ADZ03255.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           NZ-05/33]
          Length = 706

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|320528964|ref|ZP_08030056.1| polyribonucleotide nucleotidyltransferase [Selenomonas artemidis
           F0399]
 gi|320138594|gb|EFW30484.1| polyribonucleotide nucleotidyltransferase [Selenomonas artemidis
           F0399]
          Length = 690

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 10/123 (8%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74
           +++K A G+ LV++GDT +L TAT      E V  +     +       G +P   G  +
Sbjct: 19  KMAKQANGAALVRYGDTVVLVTATASSAPREGVDFFPLTVDYEEKMYAAGKIP---GGFI 75

Query: 75  KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
           KRE   GR    +    R+I R +R +         QI+     +  D     AA+ GA 
Sbjct: 76  KRE---GRPSNDAVLCARLIDRPIRPLFPEGFRNDVQIVATVLSVDQDNPPEIAAMLGAS 132

Query: 135 VAL 137
            AL
Sbjct: 133 CAL 135


>gi|116626786|ref|YP_828942.1| polynucleotide phosphorylase/polyadenylase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|122251352|sp|Q01NW3|PNP_SOLUE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116229948|gb|ABJ88657.1| 3' exoribonuclease [Candidatus Solibacter usitatus Ellin6076]
          Length = 701

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 82/207 (39%), Gaps = 30/207 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R  GR+ +Q+R+I++   V     GS L   G+T  L T TL     E+++ +       
Sbjct: 311 RPDGREFDQIRQITIETGVLPRVHGSTLFTRGETQALVTVTLGTKDDEQRIELLEPGEAS 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQR--MIGRALRSVVDLSALGSRQIII 114
                 Y   P S G       V   +G   +EI    +  RAL +++         + +
Sbjct: 371 KRFMLHYNFPPFSVGE------VGFMRGAGRREIGHGALAERALTALIPGEDKFPYTMRV 424

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---G 171
             D ++++G +  AAI G  +AL              Q    +  HV  ++ G++     
Sbjct: 425 VSDTLESNGSSSMAAICGGSLAL-------------MQAGVPMTAHVGGVAMGLVMEGKD 471

Query: 172 YPIV-DLDYGEDSTIDVDANFVMTDSG 197
           Y I+ D+   ED   D+D     T  G
Sbjct: 472 YAILTDIAGAEDHYGDMDFKVAGTRDG 498


>gi|268681650|ref|ZP_06148512.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID332]
 gi|268621934|gb|EEZ54334.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID332]
          Length = 707

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 377 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 433 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 472


>gi|255019829|ref|ZP_05291905.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970758|gb|EET28244.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus
           ATCC 51756]
          Length = 692

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 84/204 (41%), Gaps = 25/204 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   +     GS L   G+T  L  ATL    +E++   ++     
Sbjct: 313 RIDGRDRTTVRPIEIEVGIMPRTHGSALFTRGETQALVIATLGTKGDEQIVDALQGESRD 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG      +   R+ G      R+  RA+ +V+   +     + I  +
Sbjct: 373 RFMLHYNFPPFSTGETGMVGSPKRREIGHG----RLAKRAVAAVLPSESEFPYSLRIVSE 428

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---YPI 174
           +++++G +  A + GA +AL D                 LK  VA ++ G++     Y +
Sbjct: 429 ILESNGSSSMATVCGASLALMDA-------------GVPLKAPVAGVAMGLIKDGERYAV 475

Query: 175 V-DLDYGEDSTIDVDANFVMTDSG 197
           + D+   ED   D+D     T++G
Sbjct: 476 LTDILGDEDHLGDMDFKVAGTENG 499


>gi|288560608|ref|YP_003424094.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter
           ruminantium M1]
 gi|288543318|gb|ADC47202.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter
           ruminantium M1]
          Length = 263

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 98/248 (39%), Gaps = 27/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMWIRNTKHGWI 59
           R  GR  ++ R+I +   V   AEGS  VK GDT ++     T+ E    +      G +
Sbjct: 21  RADGRAFDERRDIFIEPNVIDKAEGSARVKLGDTQVIVGVKPTIGEP---FADTPNLGVL 77

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------ 111
                +LP +           G     S E+ R++ R +R   +VDL  L   +      
Sbjct: 78  MTNCELLPMAAPG-----FEPGPPSPESIELARVVDRGIRESELVDLEKLCIEEGKKVWM 132

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ------VLKGHVAAI 164
           + ID  VI  DG     A      AL +  L   E   ++  LS+       ++  +A  
Sbjct: 133 LFIDLHVIDYDGNLFDCANLAVMSALLNTKLPVAEYIDDEVVLSEDETMDLPVRDKLALS 192

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLA 223
           +   +    I+D    E+  +D      +TD G HI  +Q   E    ++D     ++LA
Sbjct: 193 TFVKIGNGLILDPSLEEEEILDARITIGVTDEGNHICSMQKGGEEP-LTRDDILDAVHLA 251

Query: 224 KDRIADLI 231
            +   DL+
Sbjct: 252 FETKDDLL 259


>gi|240123023|ref|ZP_04735979.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID332]
          Length = 706

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|240016088|ref|ZP_04722628.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           FA6140]
          Length = 706

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|148241642|ref|YP_001226799.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           RCC307]
 gi|187611327|sp|A5GRD7|PNP_SYNR3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|147849952|emb|CAK27446.1| Polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           RCC307]
          Length = 719

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 44/242 (18%)

Query: 12  REISLT-RRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG----WITAEY--- 63
           REI LT RR +  A GS L++ GDT +L TAT          N + G     +T +Y   
Sbjct: 13  REIRLTTRRYAPQAGGSVLIECGDTAVLVTATRA--------NGREGIDFLPLTCDYEER 64

Query: 64  ----GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
               G +P   G+ ++RE+   R   R+    R+I R +R +         QI+     +
Sbjct: 65  LYAAGRIP---GSFMRRES---RPPERATLACRLIDRPIRPLFPSWMRDDLQIVATVMSV 118

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLD 178
                    A+TGA +A                L+++   G +AA+  G+L    I++  
Sbjct: 119 DERVPPDVLAVTGASLAT--------------LLAKIPFYGPMAAVRVGLLGDDFILNPS 164

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y E    ++D     T  G +V V+  A++    ++     ++   + + +LI+ QK+ I
Sbjct: 165 YREIERSELDLVVAGTAEG-VVMVEAGAQQ--LPEEDMIEAIDFGYEAVLELIRHQKETI 221

Query: 239 SN 240
           + 
Sbjct: 222 AE 223


>gi|59800780|ref|YP_207492.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           FA 1090]
 gi|240120719|ref|ZP_04733681.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID24-1]
 gi|268594384|ref|ZP_06128551.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           35/02]
 gi|268596381|ref|ZP_06130548.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           FA19]
 gi|268600863|ref|ZP_06135030.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID18]
 gi|268686120|ref|ZP_06152982.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291044327|ref|ZP_06570036.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           DGI2]
 gi|293399517|ref|ZP_06643670.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           F62]
 gi|75356328|sp|Q5F9Q7|PNP_NEIG1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|59717675|gb|AAW89080.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
           gonorrhoeae FA 1090]
 gi|268547773|gb|EEZ43191.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           35/02]
 gi|268550169|gb|EEZ45188.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           FA19]
 gi|268584994|gb|EEZ49670.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID18]
 gi|268626404|gb|EEZ58804.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291011221|gb|EFE03217.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           DGI2]
 gi|291610086|gb|EFF39208.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           F62]
          Length = 707

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 377 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 433 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 472


>gi|325129928|gb|EGC52729.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           OX99.30304]
          Length = 706

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|218767879|ref|YP_002342391.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
           Z2491]
 gi|187610303|sp|A1IR09|PNP_NEIMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|121051887|emb|CAM08193.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
           meningitidis Z2491]
 gi|319410126|emb|CBY90462.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase; PNPase; CAP87K) [Neisseria meningitidis
           WUE 2594]
          Length = 706

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|115372776|ref|ZP_01460082.1| polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823414|ref|YP_003955772.1| polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370257|gb|EAU69186.1| polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396486|gb|ADO73945.1| Polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 807

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 93/228 (40%), Gaps = 37/228 (16%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTA-TLEEKVPMWIRNTKHGWITAEY-------GMLPRST 70
           R++K A+G+ +V++GDT LL TA +  EK     ++     +T EY       G +P   
Sbjct: 104 RLAKQADGAVVVRYGDTMLLVTAVSAREK-----KDVDFLPLTVEYQEKLYSAGRIP--- 155

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  KRE   GR   +     R++ R+ R +         QII      + +       I
Sbjct: 156 GSYFKRE---GRLTEKETLASRLVDRSCRPLFPDGYAYETQIIASVVSAEPENEGDIHGI 212

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
           TGA  AL      + D            G +A I  G + G  + +    +    D+D  
Sbjct: 213 TGASAAL-----WVSDIP--------FNGPIAGIRVGRVDGKFVANPTLKQREQSDID-- 257

Query: 191 FVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            VM  S   IV V+G AE    S+    A L   K  +   + +Q ++
Sbjct: 258 LVMAVSREAIVMVEGGAEE--VSEADMVAALEFGKQAVQPALDIQDEL 303


>gi|240112443|ref|ZP_04726933.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           MS11]
 gi|240117467|ref|ZP_04731529.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID1]
 gi|240125275|ref|ZP_04738161.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           SK-92-679]
          Length = 706

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|254493246|ref|ZP_05106417.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           1291]
 gi|268598511|ref|ZP_06132678.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           MS11]
 gi|268603169|ref|ZP_06137336.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID1]
 gi|268683877|ref|ZP_06150739.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           SK-92-679]
 gi|226512286|gb|EEH61631.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           1291]
 gi|268582642|gb|EEZ47318.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           MS11]
 gi|268587300|gb|EEZ51976.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID1]
 gi|268624161|gb|EEZ56561.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           SK-92-679]
          Length = 707

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 377 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 433 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 472


>gi|194098066|ref|YP_002001114.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998524|ref|ZP_04718448.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           35/02]
 gi|240013649|ref|ZP_04720562.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           DGI18]
 gi|240080230|ref|ZP_04724773.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           FA19]
 gi|240115183|ref|ZP_04729245.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID18]
 gi|240127729|ref|ZP_04740390.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|260440999|ref|ZP_05794815.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           DGI2]
 gi|226702668|sp|B4RK29|PNP_NEIG2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|193933356|gb|ACF29180.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           NCCP11945]
 gi|317163799|gb|ADV07340.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 706

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|73666963|ref|YP_302979.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia canis str.
           Jake]
 gi|123615003|sp|Q3YSC4|PNP_EHRCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|72394104|gb|AAZ68381.1| 3 exoribonuclease:RNA binding S1:KH [Ehrlichia canis str. Jake]
          Length = 796

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 8/143 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  +++R I +   V   A GS L   G+T  L    L    +E++   +   +  
Sbjct: 319 RIDGRAFDEIRNIEIEVDVLPKAHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P + G      A   R+ G      ++  RA+R V+   +     I +  +
Sbjct: 379 NFLLHYNFPPYAVGESAALRAPGRREIGHG----KLAWRAIRYVLPEKSDFPYTIRVVSE 434

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           + ++DG +  A + GA +AL D 
Sbjct: 435 ITESDGSSSMATVCGASLALMDT 457


>gi|317495525|ref|ZP_07953893.1| polyribonucleotide nucleotidyltransferase [Gemella moribillum M424]
 gi|316914339|gb|EFV35817.1| polyribonucleotide nucleotidyltransferase [Gemella moribillum M424]
          Length = 695

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 35/227 (15%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRSTGNR 73
           +++ A  + +VK+GDT +LTTA   ++       P+ +   +  +     G +P   G  
Sbjct: 24  MARQANAAVVVKYGDTVVLTTAVASKEAKDVDFFPLTVNYEEKMYAV---GKIP---GGF 77

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
           ++RE   GR G  +    R+I R +R + +       Q+I     ++ D     AA+ G+
Sbjct: 78  LRRE---GRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLSVEYDCDPVMAAMLGS 134

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV--DLDYGEDSTIDVDANF 191
            +AL          SN        KG +A ++ G + G  ++  +++  E S ID+    
Sbjct: 135 SLALS--------VSN-----IPFKGPIAGVTVGYVDGEYVINPNVEQFEKSKIDLK--- 178

Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           V      I  V+  AE    S++     +    + I  LI  Q+ ++
Sbjct: 179 VAGTKDAINMVEAGAEEV--SEEVMLNAIMFGHEEIKRLIAFQQQIV 223


>gi|312865445|ref|ZP_07725672.1| polyribonucleotide nucleotidyltransferase [Streptococcus downei
           F0415]
 gi|311098963|gb|EFQ57180.1| polyribonucleotide nucleotidyltransferase [Streptococcus downei
           F0415]
          Length = 825

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 33/229 (14%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRSTGN 72
           +V+K A G+ +V +GD+ +L  AT+ +K+      P+ +   +  +   ++       G 
Sbjct: 21  QVAKQANGAAVVHYGDSTVLCAATMSKKMARTDFFPLQVNYEEKMYAAGKF------PGG 74

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR    +    R+I R +R +         Q+I        D     AA+  
Sbjct: 75  FMKRE---GRPSADATLTARLIDRPIRPLFAQGFRNEVQVINTVLSYDPDASAPMAAMFA 131

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
           + +AL  C+  +             +G +A +    L G  I++    +    ++D    
Sbjct: 132 SSLAL--CISDIP-----------FEGPIAGVQVAYLDGEFIINPTAQQKEASNLDLTVA 178

Query: 193 MT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            T D+ ++VE  G+ E    S+D     L      I +LI  Q+++++ 
Sbjct: 179 GTKDAINMVE-SGAQE---LSEDIMLEALLKGHQAIQELIAFQEEIVAT 223


>gi|169333888|ref|ZP_02861081.1| hypothetical protein ANASTE_00274 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259453|gb|EDS73419.1| hypothetical protein ANASTE_00274 [Anaerofustis stercorihominis DSM
           17244]
          Length = 711

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 91/223 (40%), Gaps = 26/223 (11%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           +++ A GS  + +GDT +L  A +    +E +  +  +  +       G +P   G  +K
Sbjct: 21  LAQMANGSVFISYGDTQILVNACMSKEAKEGIDFFPLSVFYEEKMYSVGKIP---GGFLK 77

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE   GR   ++    R+I R LR + D       QI+     +  D      +I GA +
Sbjct: 78  RE---GRASEKATLTCRLIDRPLRPLFDKGFRNDVQIVATVMGVDQDNSPEITSILGASL 134

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
           AL      + D            G V A++ G++ G  + +    +    D+      T 
Sbjct: 135 AL-----GISDIP--------FDGPVGAVNVGLIDGELVYNPTSDQRDISDLSLTVAGTS 181

Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
              ++   G+ E    S++     +  A + I ++IK Q+++I
Sbjct: 182 EAVLMVEAGANE---VSEEIMIDAIMGAHEHIKEIIKFQEEII 221


>gi|323489596|ref|ZP_08094823.1| polynucleotide phosphorylase/polyadenylase [Planococcus donghaensis
           MPA1U2]
 gi|323396727|gb|EGA89546.1| polynucleotide phosphorylase/polyadenylase [Planococcus donghaensis
           MPA1U2]
          Length = 705

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 43/231 (18%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTG 71
           +++K A G+ L+++GDT +L+TAT   K P   +      +T  Y       G +P   G
Sbjct: 23  QLAKQANGAALIRYGDTAVLSTATA-SKTP---KPLDFFPLTVNYEERLYAVGKIP---G 75

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
             +KRE   GR   ++    R+I R +R +         Q+I     +  D  +  AA+ 
Sbjct: 76  GFIKRE---GRPSEKATLTSRLIDRPIRPLFPDGFRNEVQVISMVMSVDQDCPSEMAAMF 132

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL--DYGEDSTIDVDA 189
           G+ +AL      + D            G +A +  G++ G  I++   D  E S+I    
Sbjct: 133 GSSLAL-----MISDIP--------FGGPIAGVIVGLIDGQYIINPTNDQLEQSSI---- 175

Query: 190 NFVMT---DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           N ++    D+ ++VE  G+ E    S++     +    + I  LI  Q+ +
Sbjct: 176 NLIVAGTKDAINMVEA-GAKE---VSEEVILEAIMFGHEEIKKLIAFQEQI 222


>gi|260436528|ref|ZP_05790498.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           8109]
 gi|260414402|gb|EEX07698.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           8109]
          Length = 721

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 95/236 (40%), Gaps = 32/236 (13%)

Query: 12  REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64
           REI LT  R +  A GS LV+ GDT +L TAT        + +P+     +  +      
Sbjct: 13  REIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSGGRDGIDFLPLICDYEERLYAAG--- 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R  G+ ++RE+   R   R+    R+I R +R +         Q++  C  +     
Sbjct: 70  ---RIPGSYMRRES---RPPERATLTARLIDRPMRPLFPSWLRDDLQVVATCLSLDERVP 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+TGA +A                      G +AA+  G+L    +++  Y E   
Sbjct: 124 ADVLAVTGASIA-------------TLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIER 170

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            D+D     T  G +V V+  A +    +      ++   + I +LIK Q+ ++ +
Sbjct: 171 GDLDLVVAGTPDG-VVMVEAGANQ--LPEQDVIEAIDFGYEAICELIKAQEQLLKD 223


>gi|298368480|ref|ZP_06979798.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. oral taxon
           014 str. F0314]
 gi|298282483|gb|EFI23970.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. oral taxon
           014 str. F0314]
          Length = 705

 Score = 39.7 bits (91), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPSPEEFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|218437998|ref|YP_002376327.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC
           7424]
 gi|226702644|sp|B7KIQ3|PNP_CYAP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218170726|gb|ACK69459.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7424]
          Length = 718

 Score = 39.7 bits (91), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 97/228 (42%), Gaps = 33/228 (14%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
           ++  A GS L++ GDT +L TAT        + +P+ +   +  +         R  G  
Sbjct: 22  LAPQAGGSVLIQSGDTAVLVTATKAASREGVDFLPLTVDYEERLYAAG------RIPGGF 75

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
           ++RE   GR   ++  I R+I R LR +         Q+I     +  +      A+TGA
Sbjct: 76  LRRE---GRPPEKAILISRLIDRPLRPLFPHWLRDDIQVIATTLSMDEEVPPDVLAVTGA 132

Query: 134 WVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
            +A+               L+++   G +AA+  G++    I++  Y E +T D+D    
Sbjct: 133 SLAVI--------------LAEIPFFGPMAAVRVGLVGDDFIINPTYKEINTGDLDLVVA 178

Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            +  G +V V+  A +    +      ++   + + DLI  Q+DV+  
Sbjct: 179 GSPDG-VVMVEAGANQ--LPEQDIIEAIDFGYEAVRDLIAAQQDVMET 223


>gi|261364736|ref|ZP_05977619.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa ATCC
           25996]
 gi|288567035|gb|EFC88595.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa ATCC
           25996]
          Length = 706

 Score = 39.7 bits (91), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPSPEEFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|324992451|gb|EGC24372.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK405]
 gi|327462786|gb|EGF09108.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK1057]
          Length = 733

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 15/127 (11%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70
           T +V+K A GS +V++G++ +LT AT+ +K+      P+ +   +  +   +Y       
Sbjct: 19  TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR    +    R+I R +R +         Q+I        D   + AA+
Sbjct: 73  GGFNKRE---GRPSMDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129

Query: 131 TGAWVAL 137
            G+ +AL
Sbjct: 130 FGSSLAL 136


>gi|318040477|ref|ZP_07972433.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           CB0101]
          Length = 715

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 98/235 (41%), Gaps = 34/235 (14%)

Query: 12  REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64
           REI LT  R +  A GS +V+ GDT +L TAT        + +P+     +  +      
Sbjct: 13  REIRLTTGRFAPQAGGSVMVECGDTAVLVTATRSGGREGIDFLPLICDYEERLYAAG--- 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R  G+ ++RE+   R   R+  I R+I R +R +         QI+  C  +     
Sbjct: 70  ---RIPGSFMRRES---RPPERATLIARLIDRPMRPLFPSWLRDDLQIVATCMSLDERVP 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183
               A+TGA +A                L+++   G +AA+  G+L    +++  Y E  
Sbjct: 124 PDVLAVTGASLATL--------------LAKIPFHGPMAAVRVGLLGDDFVLNPSYREIE 169

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             D+D     T  G I+   G+ +     +      ++   + + +LIK Q+ ++
Sbjct: 170 RSDLDLVVAGTPEGVIMVEAGANQ---LPEQDVIEAIDFGYEAVCELIKAQQALL 221


>gi|282897292|ref|ZP_06305294.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9]
 gi|281197944|gb|EFA72838.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9]
          Length = 259

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 51/237 (21%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGNR 73
           ++  A GS L++ GDT +L TAT  E       +P+ +   +  +         R  G  
Sbjct: 22  LAPQAGGSVLIESGDTAVLVTATRSEAREGIDFLPLTVDYEERLYAAG------RIPGGI 75

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVV------DLSALG---SRQIIIDCDVIQADGG 124
           ++RE   GR   R+    R+I R LR +       DL  +    S   ++  DV+     
Sbjct: 76  MRRE---GRPPERAILTSRLIDRPLRPLFPSWLRDDLQVIALTLSMDELVPPDVL----- 127

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183
               A+TGA +A                ++Q+   G +AA+  G++    I++  Y E  
Sbjct: 128 ----AVTGASIATL--------------IAQIPFYGPMAAVRVGLVGDDFIINPTYAEIE 169

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             D+D     +  G I+   G+ +     +      ++   + + DLI+ Q+D+I+ 
Sbjct: 170 AGDLDLVVAGSPDGVIMVEAGANQ---LPERDIIEAIDFGYEAVRDLIQAQRDLIAE 223


>gi|254671820|emb|CBA03945.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           alpha275]
          Length = 579

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|194335788|ref|YP_002017582.1| Polyribonucleotide nucleotidyltransferase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|226702672|sp|B4SDX4|PNP_PELPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|194308265|gb|ACF42965.1| Polyribonucleotide nucleotidyltransferase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 728

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 8/142 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           RL GR  +Q+R IS+   +   A GS L   G+T  L T TL  K        + ++   
Sbjct: 332 RLDGRALDQVRPISIELGIIPRAHGSALFTRGETQALVTITLGTKKDAQSVDNLTSSADK 391

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G   +  ++  R+ G       +  R+++ V          I I  D
Sbjct: 392 KFYLHYNFPPFCVGETGRLGSIGRREIGHGN----LAERSIKMVAPTEEEFPYTIRIVSD 447

Query: 118 VIQADGGTRTAAITGAWVALHD 139
           +++++G +  A++ G  +AL D
Sbjct: 448 ILESNGSSSMASVCGGTLALMD 469


>gi|78212120|ref|YP_380899.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           CC9605]
 gi|123578701|sp|Q3AM38|PNP_SYNSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78196579|gb|ABB34344.1| RNA binding S1 [Synechococcus sp. CC9605]
          Length = 721

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 95/236 (40%), Gaps = 32/236 (13%)

Query: 12  REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64
           REI LT  R +  A GS LV+ GDT +L TAT        + +P+     +  +      
Sbjct: 13  REIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSGGREGIDFLPLICDYEERLYAAG--- 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R  G+ ++RE+   R   R+    R+I R +R +         Q++  C  +     
Sbjct: 70  ---RIPGSYMRRES---RPPERATLTARLIDRPMRPLFPSWLRDDLQVVATCLSLDERVP 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+TGA +A                      G +AA+  G+L    +++  Y E   
Sbjct: 124 ADVLAVTGASIA-------------TLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIER 170

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            D+D     T  G +V V+  A +    +      ++   + I +LIK Q+ ++ +
Sbjct: 171 GDLDLVVAGTPDG-VVMVEAGANQ--LPEQDVIEAIDFGYEAICELIKAQEQLLKD 223


>gi|294788877|ref|ZP_06754118.1| polyribonucleotide nucleotidyltransferase [Simonsiella muelleri
           ATCC 29453]
 gi|294483359|gb|EFG31045.1| polyribonucleotide nucleotidyltransferase [Simonsiella muelleri
           ATCC 29453]
          Length = 703

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R I++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      +  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPKPEDFNYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA ++ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGVAMGLIL 471


>gi|148361082|ref|YP_001252289.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
           str. Corby]
 gi|296108412|ref|YP_003620113.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
           2300/99 Alcoy]
 gi|187610281|sp|A5IHU3|PNP_LEGPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148282855|gb|ABQ56943.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
           str. Corby]
 gi|295650314|gb|ADG26161.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
           2300/99 Alcoy]
          Length = 729

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 25/204 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R IS+  +  +   GSCL   G+T  +  ATL    + ++   I      
Sbjct: 314 RIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQILDGISGESRD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      R+  RAL +V+  +      + I  +
Sbjct: 374 RFMLHYNFPPYSVGETGQVGSPKRREIGHG----RLAKRALMAVLPDANEFPYVLRIVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---YPI 174
           + +++G +  A + G  +AL D                 LK  VA ++ G++     Y +
Sbjct: 430 ITESNGSSSMATVCGTSLALMDA-------------GVPLKAPVAGVAMGLIKEGDRYAV 476

Query: 175 V-DLDYGEDSTIDVDANFVMTDSG 197
           + D+   ED   D+D     T+ G
Sbjct: 477 LTDILGDEDHLGDMDFKVAGTEKG 500


>gi|42523058|ref|NP_968438.1| polynucleotide phosphorylase/polyadenylase [Bdellovibrio
           bacteriovorus HD100]
 gi|81617621|sp|Q6MMS2|PNP_BDEBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|39575263|emb|CAE79431.1| polyribonucleotide nucleotidyltransferase [Bdellovibrio
           bacteriovorus HD100]
          Length = 697

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 19/130 (14%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70
           T R++K A+G+ LV  G+  +L TAT  +K       P+ +   +  + T   G +P   
Sbjct: 18  TGRLAKQADGAALVSSGNNMVLVTATSSKKASELDFFPLTVEYIEKFYAT---GKIP--- 71

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG--TRTA 128
           G   KREA   +    +  I R+I R +R V         QI+    V+ ADG       
Sbjct: 72  GGYFKREA---KPTNDAVLIARLIDRPIRPVFPEGYRHETQIV--ATVLSADGAFPLEIL 126

Query: 129 AITGAWVALH 138
           A  GA  ALH
Sbjct: 127 ASLGASAALH 136



 Score = 35.4 bits (80), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 23/174 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
           +R+ GR    +R I+    +   A GS L   G+T +L T TL     E+ V   +   K
Sbjct: 317 VRIDGRDVKTVRPIANEVGILPRAHGSGLFTRGETQVLGTVTLGTADDEQMVDSLLGLQK 376

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P S G   +    S R+ G       +  RA+++V+         I I 
Sbjct: 377 RKFML-HYNFPPYSVGEVGRMSGTSRREIGHGN----LAERAIKAVLPDFEKFPYTIRIV 431

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            +V++++G +    +    +AL D                 LKG+VA ++ G++
Sbjct: 432 SEVLESNGSSSMGTVCSGIMALLDA-------------GVPLKGNVAGVAMGLI 472


>gi|332886043|gb|EGK06287.1| polyribonucleotide nucleotidyltransferase [Dysgonomonas mossii DSM
           22836]
          Length = 723

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 10/143 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           RL GR   ++R I         A GS +   G+T  LTT T    L+EK+   + N    
Sbjct: 319 RLDGRTTTEIRPIWSEVDYLPGAHGSAVFTRGETQSLTTVTLGTKLDEKIIDDVLNNGKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG+   +  V  R+ G       +  RAL+ ++        +++   D
Sbjct: 379 RFLLHYNFPPFSTGDARPQRGVGRREIGHGN----LAHRALKPMIPSDYPYVIRVV--SD 432

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           +++++G +  A +    +AL D 
Sbjct: 433 ILESNGSSSMATVCAGTLALMDA 455


>gi|78185360|ref|YP_377795.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           CC9902]
 gi|123580765|sp|Q3AV44|PNP_SYNS9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78169654|gb|ABB26751.1| RNA binding S1 [Synechococcus sp. CC9902]
          Length = 721

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 96/236 (40%), Gaps = 32/236 (13%)

Query: 12  REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYG 64
           REI LT  R +  A GS LV+ GDT +L TAT  +       +P+     +  +      
Sbjct: 13  REIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSKGRDGIDFLPLICDYEERLYAAG--- 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R  G+ ++REA   R   R+    R+I R +R +         Q++  C  +     
Sbjct: 70  ---RIPGSYMRREA---RPPERATLTCRLIDRPMRPLFPSWMRDDLQVVATCLSLDERVP 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
           +   A+TGA +A                      G +AA+  G+L    +++  Y E   
Sbjct: 124 SDVLAVTGASIA-------------TLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIER 170

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            D+D     T  G +V V+  A +    +      ++   + I +LIK Q+ ++ +
Sbjct: 171 GDLDLVVAGTADG-VVMVEAGANQ--LPEGDVIEAIDFGYEAIQELIKAQETLLKD 223


>gi|293510045|ref|ZP_06668753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M809]
 gi|291466989|gb|EFF09507.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M809]
          Length = 580

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 35/232 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T +++K A G+ LV++GDT +L+TAT  ++     R+     +T  Y       G +P  
Sbjct: 21  TGQLAKQANGAVLVRYGDTVVLSTATASKEP----RDGDFFPLTVNYEEKMYAAGKIP-- 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   KRE   GR G  +    R+I R +R +         QI+        D   + AA
Sbjct: 75  -GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMAA 130

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ +AL      + D           +G +A ++ G + G  I++    E     +D 
Sbjct: 131 MIGSSMAL-----SVSDIP--------FQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDL 177

Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 D+ ++VE  G++E    ++      +    + I  L+  Q+ ++ +
Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITEQEMLEAIFFGHEEIQRLVDFQQQIVDH 225


>gi|152976173|ref|YP_001375690.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|187470935|sp|A7GRD7|PNP_BACCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|152024925|gb|ABS22695.1| Polyribonucleotide nucleotidyltransferase [Bacillus cytotoxicus NVH
           391-98]
          Length = 710

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 23/145 (15%)

Query: 7   QENQMREISL--------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIR 52
           QE Q+  I L        T +++K A G+ LV++GDT +L+TAT  ++       P+ + 
Sbjct: 3   QEKQVFSIDLAGRQLTIETGQLAKQANGAVLVRYGDTAVLSTATASKEAKDVDFFPLTVN 62

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
             +  +     G +P   G  +KRE   GR   ++    R+I R +R +         Q+
Sbjct: 63  YEERLYAV---GKIP---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQV 113

Query: 113 IIDCDVIQADGGTRTAAITGAWVAL 137
           +     +  D  +  AA+ G+ +AL
Sbjct: 114 VSIVMSVDQDCSSEMAAMLGSSLAL 138


>gi|52842967|ref|YP_096766.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|81376653|sp|Q5ZRV8|PNP_LEGPH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|52630078|gb|AAU28819.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 729

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 25/204 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R IS+  +  +   GSCL   G+T  +  ATL    + ++   I      
Sbjct: 314 RIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQILDGISGESRD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      R+  RAL +V+  +      + I  +
Sbjct: 374 RFMLHYNFPPYSVGETGQVGSPKRREIGHG----RLAKRALMAVLPDANEFPYVLRIVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---YPI 174
           + +++G +  A + G  +AL D                 LK  VA ++ G++     Y +
Sbjct: 430 ITESNGSSSMATVCGTSLALMDA-------------GVPLKAPVAGVAMGLIKEGDRYAV 476

Query: 175 V-DLDYGEDSTIDVDANFVMTDSG 197
           + D+   ED   D+D     T+ G
Sbjct: 477 LTDILGDEDHLGDMDFKVAGTEKG 500


>gi|316983743|gb|EFV62724.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           H44/76]
 gi|325200556|gb|ADY96011.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           H44/76]
          Length = 706

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|254431498|ref|ZP_05045201.1| 3' exoribonuclease family, domain 2 [Cyanobium sp. PCC 7001]
 gi|197625951|gb|EDY38510.1| 3' exoribonuclease family, domain 2 [Cyanobium sp. PCC 7001]
          Length = 708

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 100/237 (42%), Gaps = 34/237 (14%)

Query: 12  REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64
           REI LT  R +  A GS +V+ GDT +L TAT        + +P+     +  +      
Sbjct: 13  REIRLTTGRFAPQAGGSVMVECGDTAVLVTATRSGGREGIDFLPLICDYEERLYAAG--- 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R  G+ ++RE+   R   R+  I R+I R +R +         QI+  C  +     
Sbjct: 70  ---RIPGSFMRRES---RPPERATLIARLIDRPMRPLFPGWMRDDLQIVATCLSLDERVP 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183
               A+TGA +A                L+++   G +AA+  G+L    +++  Y E  
Sbjct: 124 PDVLAVTGASMATL--------------LAKIPFHGPMAAVRVGLLGDDFVLNPSYREIE 169

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             D+D     T  G I+   G+ +     +      ++   + +++LIK Q+ ++ +
Sbjct: 170 RSDLDLVVAGTPQGVIMVEAGANQ---LPEQDVIEGIDFGYEAVSELIKAQQALLKD 223


>gi|302381329|ref|YP_003817152.1| polyribonucleotide nucleotidyltransferase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302191957|gb|ADK99528.1| polyribonucleotide nucleotidyltransferase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 764

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 20/149 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  +++R+I     +     GS L   G+T  +  ATL    +E+    +  T   
Sbjct: 333 RVDGRALDKVRDIVSEVGIFPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLAGTYKE 392

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111
                Y   P S G        +GR GG     +R IG      RA+R ++  S      
Sbjct: 393 KFLLHYNFPPYSVGE-------TGRMGGAG---RREIGHGKLAWRAIRPMLPTSEEFPYT 442

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDC 140
           I I  ++ +++G +  A++ GA +AL D 
Sbjct: 443 IRIVSEITESNGSSSMASVCGASLALMDA 471


>gi|325982016|ref|YP_004294418.1| polyribonucleotide nucleotidyltransferase [Nitrosomonas sp. AL212]
 gi|325531535|gb|ADZ26256.1| Polyribonucleotide nucleotidyltransferase [Nitrosomonas sp. AL212]
          Length = 709

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 23/173 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R I++   V     GS L   G+T  L  ATL     E+K+     +   
Sbjct: 315 RIDGRGTRTVRAITIRNGVLPRTHGSALFTRGETQALAIATLGTARDEQKIDSLQGDYNE 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            +I   Y M P +TG   +      R+ G      R+  RAL +V+         + +  
Sbjct: 375 RFIL-HYNMPPYATGEIGRVGTPKRREIGHG----RLAKRALVAVLPPPEEFGYSLRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           ++ +++G +  A++    +AL D                 LK HVA I+ G++
Sbjct: 430 EITESNGSSSMASVCSGCLALMDA-------------GVPLKAHVAGIAMGLI 469


>gi|296840915|ref|ZP_06863772.2| polyribonucleotide nucleotidyltransferase [Neisseria polysaccharea
           ATCC 43768]
 gi|296839560|gb|EFH23498.1| polyribonucleotide nucleotidyltransferase [Neisseria polysaccharea
           ATCC 43768]
          Length = 707

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 377 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 433 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 472


>gi|238021429|ref|ZP_04601855.1| hypothetical protein GCWU000324_01329 [Kingella oralis ATCC 51147]
 gi|237868409|gb|EEP69415.1| hypothetical protein GCWU000324_01329 [Kingella oralis ATCC 51147]
          Length = 716

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R I++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      +  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPDPEDFNYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|228469449|ref|ZP_04054457.1| polyribonucleotide nucleotidyltransferase [Porphyromonas uenonis
           60-3]
 gi|228309024|gb|EEK17667.1| polyribonucleotide nucleotidyltransferase [Porphyromonas uenonis
           60-3]
          Length = 736

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 10/148 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           RL GR+ +++R I +         GS +   G+T  L+T TL    +EK+   + N    
Sbjct: 318 RLDGRRTDEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKLVDDVLNYGKE 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG       +S R+ G      R + R +    D   +    I +  D
Sbjct: 378 RFLLHYNFPPFSTGEAKASRGISRREIGHGNLAHRALKRMIPE--DYPYV----IRVMSD 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHME 145
           +++++G +  A +    +AL D    M+
Sbjct: 432 ILESNGSSSMATVCAGTLALRDAGVQMK 459


>gi|255066227|ref|ZP_05318082.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca ATCC
           29256]
 gi|255049437|gb|EET44901.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca ATCC
           29256]
          Length = 706

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPSPEEFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|239788290|dbj|BAH70834.1| ACYPI001085 [Acyrthosiphon pisum]
          Length = 213

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 15/152 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----- 55
           +R  GR+  ++R I     V    +GS  ++ G+T ++         P  IR  +     
Sbjct: 9   LRTDGRRSGELRRIRCKMGVFNQPDGSAYLEQGNTKVVAAI----YGPHEIRTNRAKAPN 64

Query: 56  -HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
               I  +Y M   S   R +R      +  +S E+   + +A+ + +        QI I
Sbjct: 65  DSAVINCQYSMATFSRSERKRRP-----RDNKSAELTLHLKQAMATAIKTDLYPKSQIDI 119

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMED 146
              V+Q+DGG  +  +  A +AL D    ME+
Sbjct: 120 FVQVLQSDGGNYSVCVNAATLALIDAGIAMEE 151


>gi|313668762|ref|YP_004049046.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica
           ST-640]
 gi|313006224|emb|CBN87686.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
           lactamica 020-06]
          Length = 706

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|269213998|ref|ZP_05983355.2| polyribonucleotide nucleotidyltransferase [Neisseria cinerea ATCC
           14685]
 gi|269144760|gb|EEZ71178.1| polyribonucleotide nucleotidyltransferase [Neisseria cinerea ATCC
           14685]
          Length = 707

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 377 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 433 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 472


>gi|161869702|ref|YP_001598869.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
           053442]
 gi|189037311|sp|A9M3J0|PNP_NEIM0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|161595255|gb|ABX72915.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           053442]
          Length = 706

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|256370772|ref|YP_003108597.1| putative polyribonucleotide nucleotidyltransferase [Candidatus
           Sulcia muelleri SMDSEM]
 gi|256009564|gb|ACU52924.1| putative polyribonucleotide nucleotidyltransferase [Candidatus
           Sulcia muelleri SMDSEM]
          Length = 691

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 25/176 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           RL GR  + +R+I           GS +   G+T  L+T TL       K+   I   + 
Sbjct: 319 RLDGRSLDDLRKIWSQTNFLPSVHGSAIFSRGETQALSTVTLGSSLDVNKIDNVILQDQQ 378

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            +    Y   P STG     + +S R+ G     Q    RAL++++      + +++   
Sbjct: 379 KF-YLHYNFPPFSTGEIKLLKGISRREIGHGNLAQ----RALKNIIPFKTPYTIRVV--S 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           D+++++G +  A +  + +AL D                 +K  V+ IS G++  +
Sbjct: 432 DILESNGSSSMATVCASTLALMDA-------------GIPIKRPVSGISMGLIINF 474


>gi|113954008|ref|YP_731290.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           CC9311]
 gi|123327683|sp|Q0I8D2|PNP_SYNS3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|113881359|gb|ABI46317.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           CC9311]
          Length = 721

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 100/235 (42%), Gaps = 34/235 (14%)

Query: 12  REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYG 64
           REI LT  R +  A GS +++ GDT +L TAT  +       +P+     +  +      
Sbjct: 13  REIRLTTGRYAPQAGGSVMIECGDTSVLVTATRSKGRDGIDFLPLICDYEERLYAAG--- 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R  G+ ++RE+   R   R+  I R+I R +R +         QI+  C  +     
Sbjct: 70  ---RIPGSFMRRES---RPPERATLICRLIDRPMRPLFPSWLRDDLQIVATCMSLDERVP 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183
               A+TGA +A                L+++   G +AA+  G+L    +++  Y E  
Sbjct: 124 ADVLAVTGASMATL--------------LAKIPFYGPMAAVRVGLLGDDFVLNPSYREIE 169

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             D+D     T  G +V V+  A +    +      ++   + +++LIK Q+ ++
Sbjct: 170 RGDLDLVVAGTPQG-VVMVEAGANQ--LPEGDVIEAIDFGYEAVSELIKAQQSIL 221


>gi|269214445|ref|ZP_06158584.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica ATCC
           23970]
 gi|269209893|gb|EEZ76348.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica ATCC
           23970]
          Length = 707

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 377 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 433 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 472


>gi|190571231|ref|YP_001975589.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
 gi|226704831|sp|B3CM21|PNP_WOLPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|190357503|emb|CAQ54939.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
          Length = 758

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 14/132 (10%)

Query: 12  REISL-TRRVSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           R +SL T ++++ A+GS +V +GDT +L T      EE V     N +  +I   Y M  
Sbjct: 14  RTLSLETGKIARQADGSVVVNYGDTSILVTVVRKKKEESVDFLPLNVQ--FIAKSYAM-G 70

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125
           +  G   KRE   G+   R   I R+I R++R +         +I + C+++  D     
Sbjct: 71  KIPGGFFKRE---GKPSDRETLISRVIDRSIRPL--FPEGFHDEISVVCNLLTYDTVNSP 125

Query: 126 RTAAITGAWVAL 137
              A+ G   AL
Sbjct: 126 EVPALIGTVAAL 137



 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 73/175 (41%), Gaps = 25/175 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+  R+ +++R+I +   +     GS L   G T  L    L    +E++   I   + 
Sbjct: 310 VRIDSRKYDEIRQIEIEADILPKTHGSALFTRGSTQALVVTALGTTQDEQIVDDIEGDRR 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                 Y   P + G     EA + R  GR +EI   ++  +A+  V+   +     I +
Sbjct: 370 EHFMLHYNFPPFAVG-----EASAIRAPGR-REIGHGKLAWKAIHPVLPDKSEFPYTIRV 423

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             +++++DG +  A + G  +AL D                 +K  VA I+ G++
Sbjct: 424 VSEIMESDGSSSMATVCGTSIALMDT-------------GVPIKAPVAGIAMGLI 465


>gi|242032199|ref|XP_002463494.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor]
 gi|241917348|gb|EER90492.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor]
          Length = 239

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 97/257 (37%), Gaps = 48/257 (18%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R  S T      A GS     GDT +L            +   K G    
Sbjct: 6   RADGRNPNQLRPFSCTGNPLHRAHGSARWAQGDTVVLAA----------VYGPKPG---T 52

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
             G  P      V  +  +G+ G + +E +  + R L+S+  L+   +    +   V+  
Sbjct: 53  RKGENPEKASIEVVWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGD 112

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA-AISCGML-CGYPIVDLDY 179
           DG     AI  +  AL                + +   H+A AI CG++  G  I+D   
Sbjct: 113 DGSLLPCAINASCAAL--------------AFAGIPMKHLAVAICCGVMDNGAVILDTST 158

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAER--------------ATFSQDHFFAMLN---L 222
            E+      A+ V  +S   V+ +   ++               T S+D++F  +     
Sbjct: 159 AEEQQAKSFAHLVFPNSRKSVDSKDPMQKDEESERGLISCITHGTMSEDNYFNCIERGIA 218

Query: 223 AKDRIADLIK--LQKDV 237
           A  +I+D ++  LQK+ 
Sbjct: 219 ASSKISDFMRKTLQKEA 235


>gi|309378199|emb|CBX23171.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 706

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|325133728|gb|EGC56384.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M13399]
          Length = 706

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|45185722|ref|NP_983438.1| ACR035Wp [Ashbya gossypii ATCC 10895]
 gi|44981477|gb|AAS51262.1| ACR035Wp [Ashbya gossypii ATCC 10895]
          Length = 246

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 20/188 (10%)

Query: 1   MRLSGRQENQMR--EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHG 57
           +RL GR+ N++R  E S+    +  A+GS  ++ G+  L+T  T   +  +  + N    
Sbjct: 12  LRLDGRRWNELRRFECSINTHPTA-ADGSSYLEQGNNKLITLVTGPHEPALRSQVNPSKA 70

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +T    M   +   R K    + R   R  E+Q  + R     V L       I +   
Sbjct: 71  TLTVTVNMTKFAAAERSKTGHKNER---RILEMQTALVRTFEKNVMLQLYPRTAIDVQVH 127

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+Q DGG   + I G  +AL D    M +             +++ IS G+    P++DL
Sbjct: 128 VLQNDGGVLGSMINGITLALIDAGIAMYE-------------YISGISVGLYDTTPLLDL 174

Query: 178 DYGEDSTI 185
           +  E+  +
Sbjct: 175 NRLEEQAM 182


>gi|33519583|ref|NP_878415.1| polynucleotide phosphorylase/polyadenylase [Candidatus Blochmannia
           floridanus]
 gi|81666682|sp|Q7VQM0|PNP_BLOFL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33517246|emb|CAD83629.1| polynucleotide phosphorylase, member of mRNA degradosome
           [Candidatus Blochmannia floridanus]
          Length = 697

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 28/154 (18%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  + +REI ++  +     GS L   GDT  L TATL  +     R+ ++    
Sbjct: 316 VRFDGRSPDMIREIDISAGILPRTHGSALFTRGDTQALVTATLGTE-----RDAQN---- 366

Query: 61  AEYGMLPRSTGNRVKREAV--------SGRQG----GRSQEI--QRMIGRALRSVVDLSA 106
                L   TG+RV R  +        +G  G     R +EI   R+  R + +V+  S 
Sbjct: 367 -----LDELTGDRVDRFLLHYNFPPYCTGEIGIVGAPRRREIGHGRLAKRGMLAVMPNSN 421

Query: 107 LGSRQIIIDCDVIQADGGTRTAAITGAWVALHDC 140
                + +  +V +++G +  A+I GA +AL D 
Sbjct: 422 EFPYTVRVVSEVTESNGSSSMASICGASLALMDA 455


>gi|323697461|ref|ZP_08109373.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp. ND132]
 gi|323457393|gb|EGB13258.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio
           desulfuricans ND132]
          Length = 753

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 101/250 (40%), Gaps = 30/250 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
           +R+ GR    +R +S+   V +   GS L + G+T  L TATL     E++    + +  
Sbjct: 321 LRIDGRNTTTVRPLSIEVGVLQQTHGSALFRRGETCSLATATLGSTRDEQRYDSLLGDAT 380

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P   G        S R+ G       +  RAL  V+         I + 
Sbjct: 381 KRFML-HYNFPPYCVGEARMLRGPSRREVGHGA----LAERALTPVIPDPENFPFTIRVV 435

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            ++++++G +  A++ GA ++L D    + D              VA I+ G LC     
Sbjct: 436 SEIMESNGSSSMASVCGATLSLMDAGVPISD-------------PVAGIAMG-LCKEGDQ 481

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
            + + D+   ED+  D+D     T  G I  +Q   + A   QD     L  AK+    +
Sbjct: 482 YFVLTDILGDEDALGDMDFKVAGTRDG-ITAIQMDIKIAGIPQDVLKKALQQAKEARTHI 540

Query: 231 IKLQKDVISN 240
           +    +VI+ 
Sbjct: 541 LDHMAEVIAK 550


>gi|225075235|ref|ZP_03718434.1| hypothetical protein NEIFLAOT_00235 [Neisseria flavescens
           NRL30031/H210]
 gi|224953410|gb|EEG34619.1| hypothetical protein NEIFLAOT_00235 [Neisseria flavescens
           NRL30031/H210]
          Length = 707

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 377 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 433 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 472


>gi|326508906|dbj|BAJ86846.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 306

 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 101/270 (37%), Gaps = 43/270 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R+  + R  ++       A GS LV+ GDT +L +  LE   P        G + 
Sbjct: 39  VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSP-PAETPDQGSVA 97

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL------------G 108
            E+ M P  +            + GR  E   +I +AL  V+  S +             
Sbjct: 98  VEFHMPPICS---------PLVRPGRPAEAAPVISKALEDVLMSSGMLNLKELCLISGKA 148

Query: 109 SRQIIIDCDVIQADGGTRTAA---ITGAWVALHDCLQHMED-----------CSNKFQL- 153
           S    +D   + ADG    AA   +  A+  L   L  + D              K++L 
Sbjct: 149 SWVAYLDVYCLNADGSLFDAALISVVAAFTHLEIPLVSVGDDGRVFTVGGNEGKTKYELV 208

Query: 154 ----SQVLKGHVA-AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
                ++  G +   ++C +     +VD    E+S I+     V+  SG +V +Q     
Sbjct: 209 NREKRKLTLGDIPFPLTCALHKDSILVDPTAEEESIIETSVTVVLDSSGRLVSIQKPGGG 268

Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            T S     A + LAK+R   L ++  D I
Sbjct: 269 VT-SMAAIKACIGLAKERGQKLKEILTDSI 297


>gi|88608486|ref|YP_505958.1| polynucleotide phosphorylase/polyadenylase [Neorickettsia sennetsu
           str. Miyayama]
 gi|123750038|sp|Q2GEY8|PNP_NEOSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|88600655|gb|ABD46123.1| polyribonucleotide nucleotidyltransferase [Neorickettsia sennetsu
           str. Miyayama]
          Length = 757

 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 86/211 (40%), Gaps = 26/211 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR   ++R IS+         GS L   G T  L  ATL    +E+V   I   + 
Sbjct: 317 IRPDGRSLTEIRPISIALDYLPGTHGSALFTRGGTQSLVVATLGSYQDEQVMDDIDGERR 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
             +   Y  LP + G      A   R+ G      R+  +A+++V+    +    + +  
Sbjct: 377 ESVLLHYNFLPYAVGEVGALRAPGRREIGHG----RLALKAVKAVLPGKEVFPYTLRLVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GY 172
           ++ ++DG +  A + G+ +AL D                 +  HVA I+ G++       
Sbjct: 433 EITESDGSSSMATVCGSSLALMDT-------------GVPITKHVAGIAMGLITDGVRSA 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ 203
            + D+   ED   D+D     T +G IV +Q
Sbjct: 480 VLSDISGDEDMLGDMDFKVAGTRNG-IVALQ 509


>gi|192359049|ref|YP_001980963.1| polynucleotide phosphorylase/polyadenylase [Cellvibrio japonicus
           Ueda107]
 gi|226702631|sp|B3PIA0|PNP_CELJU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|190685214|gb|ACE82892.1| polyribonucleotide nucleotidyltransferase [Cellvibrio japonicus
           Ueda107]
          Length = 710

 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 25/204 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I++   V   A GS L   G+T  L  ATL    + ++   +   K  
Sbjct: 315 RIDGRDNKTVRPITVDVGVLPKAHGSALFTRGETQALVVATLGNARDVQIIDQLEGEKKE 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      R+  R +++V+  +      + +  +
Sbjct: 375 AFLLHYNFPPYSVGECGRMGSTGRREIGHG----RLAKRGVQAVLPKAESFPYTLRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ G+ +AL D                 LK  VA I+ G++    G+ +
Sbjct: 431 ITESNGSSSMASVCGSSLALMDA-------------GVPLKAPVAGIAMGLVKEDNGFAV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSG 197
           + D+   ED   D+D     T SG
Sbjct: 478 LTDILGDEDHLGDMDFKVAGTTSG 501


>gi|302332880|gb|ADL23073.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 698

 Score = 39.3 bits (90), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 35/232 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T +++K A G+ LV++GDT +L+TAT   K P   R+     +T  Y       G +P  
Sbjct: 21  TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   KRE   GR G  +    R+I R +R +         QI+        D   + AA
Sbjct: 75  -GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMAA 130

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ +AL      + D           +G +A ++ G + G  I++    E     +D 
Sbjct: 131 MIGSSMAL-----SVSDIP--------FQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDL 177

Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 D+ ++VE  G++E    ++      +    + I  L+  Q+ ++ +
Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITEQEMLEAIFFGHEEIQRLVDFQQQIVDH 225


>gi|269123180|ref|YP_003305757.1| Polyribonucleotide nucleotidyltransferase [Streptobacillus
           moniliformis DSM 12112]
 gi|268314506|gb|ACZ00880.1| Polyribonucleotide nucleotidyltransferase [Streptobacillus
           moniliformis DSM 12112]
          Length = 732

 Score = 39.3 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 25/204 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ +++R ++    V K   GS L   G+T  L TATL  K    I +   G    
Sbjct: 340 RADGRKIDEIRPLNAQIDVLKMPHGSALFTRGETQALVTATLGSKEDEQIIDGMEGEYNK 399

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
           +    Y   P S G      A   R+ G       +  RAL++V+ L       + +  +
Sbjct: 400 KFFLHYNFPPFSVGEAGFMRAPGRRELGHGN----LAERALKAVMPLIDDFPYTVRVVSE 455

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
           + +++G +  A+I G  +AL                   +KG VA I+ G++        
Sbjct: 456 ITESNGSSSQASICGGSLAL-------------MAAGVPIKGTVAGIAMGLIKEAENFTV 502

Query: 174 IVDLDYGEDSTIDVDANFVMTDSG 197
           + D+   ED   D+D     T  G
Sbjct: 503 LTDIQGLEDHLGDMDFKVAGTKKG 526


>gi|284799739|ref|ZP_05984737.2| polyribonucleotide nucleotidyltransferase [Neisseria subflava
           NJ9703]
 gi|284797006|gb|EFC52353.1| polyribonucleotide nucleotidyltransferase [Neisseria subflava
           NJ9703]
          Length = 707

 Score = 39.3 bits (90), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 377 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPEPEDFSYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 433 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 472


>gi|320107057|ref|YP_004182647.1| polyribonucleotide nucleotidyltransferase [Terriglobus saanensis
           SP1PR4]
 gi|319925578|gb|ADV82653.1| polyribonucleotide nucleotidyltransferase [Terriglobus saanensis
           SP1PR4]
          Length = 799

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 86/206 (41%), Gaps = 27/206 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
           +R   R  +++R I +   +     GS L   G+T  L TATL      +++  +    K
Sbjct: 314 IRPDRRAFDEIRTIDIEVGILPRTHGSALFTRGETQALVTATLGTGDDAQRMESYEGEQK 373

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P S G   +    S R+ G       +  RA+ +V+   A     + + 
Sbjct: 374 KRFML-HYNFPPYSVGEVGRMTGTSRREVGHGA----LAYRAIEAVLPPEAESPYTLRVV 428

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GY 172
            D+ +++G +  A++ GA +AL              Q    LKG VA ++ G++     Y
Sbjct: 429 SDITESNGSSSMASVCGASLAL-------------MQAGISLKGSVAGVAMGLVKEGDSY 475

Query: 173 PIV-DLDYGEDSTIDVDANFVMTDSG 197
            I+ D+   ED   D+D     T +G
Sbjct: 476 AILTDIAGAEDHYGDMDFKVAGTRNG 501


>gi|168698769|ref|ZP_02731046.1| polynucleotide phosphorylase/polyadenylase [Gemmata obscuriglobus
           UQM 2246]
          Length = 749

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 84/206 (40%), Gaps = 29/206 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR   ++R +     V     G+ L + G+T  L  ATL     E+KV   +++   
Sbjct: 317 RIDGRAPKELRALGAEVTVLPRTHGTALFQRGETQALVVATLGTVADEQKVD-GLQDEYS 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG-RALRSVVDLSALGSRQIIID 115
                +Y   P S G     E    R  GR +    M+  R+L++V+   +     I + 
Sbjct: 376 KKFFLDYNFPPYSVG-----ECKPIRAPGRREIGHGMLAERSLKAVIPPPSRFPYTIRLV 430

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            ++++++G +  A++ G  +AL D                 +K  VA IS G++      
Sbjct: 431 SEILESNGSSSMASVCGGTLALMDA-------------GVPIKRPVAGISVGLVMEKDHF 477

Query: 174 --IVDLDYGEDSTIDVDANFVMTDSG 197
             + D+   ED   D+D     T  G
Sbjct: 478 SLLTDIQGDEDHYGDMDFKVAGTQKG 503


>gi|126660748|ref|ZP_01731846.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. CCY0110]
 gi|126617989|gb|EAZ88760.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. CCY0110]
          Length = 715

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 31/227 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGNR 73
           ++  A G+ L++ GDT +L TAT  +       +P+ +   +  +         R  G  
Sbjct: 22  LAPQAGGAVLIQSGDTAVLVTATTSKGREGIDFLPLTVDYEERLYAAG------RIPGGF 75

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
           ++RE   GR   R+  I R+I R LR +         QII     +  +      A+TGA
Sbjct: 76  LRRE---GRPPERAILISRLIDRPLRPLFPNWWRDEIQIIATTLSMDEEVPPDVLAVTGA 132

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
            +A+              Q      G +AA+  G++    I++  Y E  + D+D     
Sbjct: 133 SIAV-------------IQAQIPFYGPMAAVRVGLIGDDFIINPTYREVESGDLDLVVAG 179

Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +  G +V V+  A +    +      ++   + + DLI  Q D++  
Sbjct: 180 SPDG-VVMVEAGANQ--LPEQDIIEAIDFGYEAVRDLIGAQYDIMEE 223


>gi|21282886|ref|NP_645974.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49486113|ref|YP_043334.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|253731893|ref|ZP_04866058.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|297208080|ref|ZP_06924511.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300912161|ref|ZP_07129604.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|81649409|sp|Q6G9T9|PNP_STAAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81762564|sp|Q8NWY9|PNP_STAAW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|21204325|dbj|BAB95022.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49244556|emb|CAG42985.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|253724303|gb|EES93032.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|296887323|gb|EFH26225.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300886407|gb|EFK81609.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|329733632|gb|EGG69960.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 698

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 35/232 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T +++K A G+ LV++GDT +L+TAT   K P   R+     +T  Y       G +P  
Sbjct: 21  TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   KRE   GR G  +    R+I R +R +         QI+        D   + AA
Sbjct: 75  -GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMAA 130

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ +AL      + D           +G +A ++ G + G  I++    E     +D 
Sbjct: 131 MIGSSMAL-----SVSDIP--------FQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDL 177

Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 D+ ++VE  G++E    ++      +    + I  L+  Q+ ++ +
Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITEQEMLEAIFFGHEEIQRLVDFQQQIVDH 225


>gi|324989722|gb|EGC21665.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK353]
          Length = 733

 Score = 39.3 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 99/230 (43%), Gaps = 35/230 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70
           T +V+K A GS +V++G++ +LT AT+ +K+      P+ +   +  +   +Y       
Sbjct: 19  TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR    +    R+I R +R + +       Q+I        D   + AA+
Sbjct: 73  GGFNKRE---GRPSTDATLTARLIDRPIRPMFEEGFRNEVQVINTVLSYDEDASPQMAAM 129

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
            G+ +AL               +S +   G +A +  G + G  I++    +     ++ 
Sbjct: 130 FGSSLAL--------------SISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLEL 175

Query: 190 NFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
               T D+ ++VE  G+ E    S+D     L    + + +LI  Q++++
Sbjct: 176 TVAGTKDAINMVE-SGAKE---LSEDVMLEALLKGHEAVKELIAFQEEIV 221


>gi|30248196|ref|NP_840266.1| polynucleotide phosphorylase/polyadenylase [Nitrosomonas europaea
           ATCC 19718]
 gi|81584849|sp|Q82XT0|PNP_NITEU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|30180081|emb|CAD84083.1| pnp; polyribonucleotide nucleotidyltransferase protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 708

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R I++   V     GS L   G+T  L   TL     E+K+     +   
Sbjct: 315 RIDGRGTRTVRPITIRHGVLPRTHGSALFTRGETQALAITTLGTARDEQKIDALQGDYSE 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQII 113
            ++   Y M P +TG        +GR G  + +EI   R+  RAL +V+         + 
Sbjct: 375 RFML-HYNMPPFATGE-------TGRVGTPKRREIGHGRLAKRALLAVIPPVEEFGYSMR 426

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           +  +V +++G +  A++ G  ++L D                 LK HVA I+ G++
Sbjct: 427 VVSEVTESNGSSSMASVCGGCLSLMDA-------------GVPLKAHVAGIAMGLI 469


>gi|54298752|ref|YP_125121.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila
           str. Paris]
 gi|81369705|sp|Q5X1C7|PNP_LEGPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|53752537|emb|CAH13969.1| Polynucleotide phosphorylase (PNPase) [Legionella pneumophila str.
           Paris]
          Length = 729

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 25/204 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R IS+  +  +   GSCL   G+T  +  ATL    + ++   I      
Sbjct: 314 RIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQILDGISGETRD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      R+  RAL +V+  +      + I  +
Sbjct: 374 RFMLHYNFPPYSVGETGQVGSPKRREIGHG----RLAKRALMAVLPDTNEFPYVLRIVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---YPI 174
           + +++G +  A + G  +AL D                 LK  VA ++ G++     Y +
Sbjct: 430 ITESNGSSSMATVCGTSLALMDA-------------GVPLKAPVAGVAMGLIKEGDRYAV 476

Query: 175 V-DLDYGEDSTIDVDANFVMTDSG 197
           + D+   ED   D+D     T+ G
Sbjct: 477 LTDILGDEDHLGDMDFKVAGTEKG 500


>gi|257062723|gb|ACV40374.1| ribosomal RNA-processing protein 46 [Hordeum vulgare subsp.
           vulgare]
          Length = 240

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 98/250 (39%), Gaps = 48/250 (19%)

Query: 7   QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
           + NQ+R  S TR   + A GS     GDT +L            +   + G      G  
Sbjct: 12  KANQLRAYSCTRNPLERAHGSARWAQGDTVVLAA----------VYGPRPG---TRKGEN 58

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P      V  +  +G+ G + +E +  + R L+S+  L+   +    I   V+  DG   
Sbjct: 59  PEKASLEVVWKPKTGQIGRQEKEYEMTLKRTLQSICLLTVHPNTTTSIILQVMGDDGSLL 118

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA-AISCGMLC-GYPIVDLDYGEDST 184
             AI  +  AL                + +   H+A AI CG+L  G  I+D    E+  
Sbjct: 119 PCAINASCAAL--------------VFAGIPMKHLAVAIGCGVLPDGSVILDTSKAEEQQ 164

Query: 185 IDVDANFVMTDSGHIVEVQ------GSAER--------ATFSQDHFFAMLN---LAKDRI 227
           +   A+ V  +S   V+V+      G +ER           S+D +F  +     A  RI
Sbjct: 165 LKSFAHLVFPNSSLSVDVKEPQQKDGQSERGLITSITHGVMSEDDYFNCIERGLAASARI 224

Query: 228 ADLIK--LQK 235
           +D ++  LQK
Sbjct: 225 SDFMRTTLQK 234


>gi|241758689|ref|ZP_04756802.1| polyribonucleotide nucleotidyltransferase [Neisseria flavescens
           SK114]
 gi|241320897|gb|EER57110.1| polyribonucleotide nucleotidyltransferase [Neisseria flavescens
           SK114]
          Length = 706

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPEPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|82750875|ref|YP_416616.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           RF122]
 gi|117940113|sp|Q2YXP2|PNP_STAAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|82656406|emb|CAI80825.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           RF122]
          Length = 698

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 35/232 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T +++K A G+ LV++GDT +L+TAT   K P   R+     +T  Y       G +P  
Sbjct: 21  TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   KRE   GR G  +    R+I R +R +         QI+        D   + AA
Sbjct: 75  -GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMAA 130

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ +AL      + D           +G +A ++ G + G  I++    E     +D 
Sbjct: 131 MIGSSMAL-----SVSDIP--------FQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDL 177

Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 D+ ++VE  G++E    ++      +    + I  L+  Q+ ++ +
Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITEQEMLEAIFFGHEEIQRLVDFQQQIVDH 225


>gi|298694566|gb|ADI97788.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus ED133]
          Length = 698

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 35/232 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T +++K A G+ LV++GDT +L+TAT   K P   R+     +T  Y       G +P  
Sbjct: 21  TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   KRE   GR G  +    R+I R +R +         QI+        D   + AA
Sbjct: 75  -GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMAA 130

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ +AL      + D           +G +A ++ G + G  I++    E     +D 
Sbjct: 131 MIGSSMAL-----SVSDIP--------FQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDL 177

Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 D+ ++VE  G++E    ++      +    + I  L+  Q+ ++ +
Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITEQEMLEAIFFGHEEIQRLVDFQQQIVDH 225


>gi|78485473|ref|YP_391398.1| polynucleotide phosphorylase/polyadenylase [Thiomicrospira
           crunogena XCL-2]
 gi|123755229|sp|Q31GJ9|PNP_THICR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78363759|gb|ABB41724.1| Polyribonucleotide nucleotidyltransferase [Thiomicrospira crunogena
           XCL-2]
          Length = 694

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 24/132 (18%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW----ITAEY-------GM 65
           T  +++ A+G+ +V  GDT LL T        +  +N K G     +T +Y       G 
Sbjct: 19  TGEIARQADGAVMVAMGDTQLLVTV-------VGAKNAKAGQDFFPLTVQYQEKAYAAGR 71

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G  +KRE   GR   +     R+I R +R +     +   Q+I     +  + GT
Sbjct: 72  IP---GGFLKRE---GRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVVSLDPEIGT 125

Query: 126 RTAAITGAWVAL 137
              A+ G   AL
Sbjct: 126 EVPAMLGTSAAL 137


>gi|330950302|gb|EGH50562.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           Cit 7]
          Length = 701

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + NT  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLNTLEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++++++  + +    I +
Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M+       +  V +G   AI   +L
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 483


>gi|320160467|ref|YP_004173691.1| polyribonucleotide nucleotidyltransferase [Anaerolinea thermophila
           UNI-1]
 gi|319994320|dbj|BAJ63091.1| polyribonucleotide nucleotidyltransferase [Anaerolinea thermophila
           UNI-1]
          Length = 760

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 81/210 (38%), Gaps = 35/210 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT---------LEEKVPMWI 51
           +R   R   ++R I     +S  A GS L   G+T +LT AT         L+  VP+  
Sbjct: 315 IRPDHRTPTEIRPIWCEVGISPRAHGSGLFTRGETQVLTLATLGTPREAQELDSLVPIET 374

Query: 52  RNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +   H      Y   P STG        S R+ G       +  RAL  V+         
Sbjct: 375 KRYMH-----HYNFPPYSTGEVKPLRGQSRREIGHGA----LAERALEPVIPPEDEFPYT 425

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-- 169
           + +  +V+ ++G T  A++ G+ +AL D                 +K  VA ++ G++  
Sbjct: 426 LRLVSEVLSSNGSTSMASVCGSTLALMDT-------------GVPIKAPVAGVAMGLIKE 472

Query: 170 --CGYPIVDLDYGEDSTIDVDANFVMTDSG 197
                 + D+   ED   D+D     T+ G
Sbjct: 473 GDNAVILTDIQGLEDHLGDMDFKVAGTEKG 502


>gi|15924264|ref|NP_371798.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15926857|ref|NP_374390.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus N315]
 gi|57651844|ref|YP_186150.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus COL]
 gi|87160870|ref|YP_493864.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88194984|ref|YP_499784.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|148267764|ref|YP_001246707.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150393823|ref|YP_001316498.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|151221395|ref|YP_001332217.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|156979595|ref|YP_001441854.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|161509440|ref|YP_001575099.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|221142508|ref|ZP_03567001.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus str. JKD6009]
 gi|253316410|ref|ZP_04839623.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|253733488|ref|ZP_04867653.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|255006061|ref|ZP_05144662.2| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257795670|ref|ZP_05644649.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9781]
 gi|258416073|ref|ZP_05682341.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus A9763]
 gi|258421656|ref|ZP_05684580.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9719]
 gi|258423885|ref|ZP_05686770.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9635]
 gi|258434812|ref|ZP_05688886.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9299]
 gi|258444612|ref|ZP_05692941.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8115]
 gi|258447555|ref|ZP_05695699.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A6300]
 gi|258449397|ref|ZP_05697500.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus A6224]
 gi|258452573|ref|ZP_05700579.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A5948]
 gi|258454776|ref|ZP_05702740.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus A5937]
 gi|262048163|ref|ZP_06021050.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           D30]
 gi|262051336|ref|ZP_06023559.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           930918-3]
 gi|269202891|ref|YP_003282160.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282892762|ref|ZP_06300997.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8117]
 gi|282920518|ref|ZP_06328239.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9765]
 gi|282927616|ref|ZP_06335232.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A10102]
 gi|284024267|ref|ZP_06378665.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus 132]
 gi|294848270|ref|ZP_06789017.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9754]
 gi|295406211|ref|ZP_06816018.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8819]
 gi|296274832|ref|ZP_06857339.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297244439|ref|ZP_06928322.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8796]
 gi|304381162|ref|ZP_07363815.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|81694630|sp|Q5HGF7|PNP_STAAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81705784|sp|Q7A5X7|PNP_STAAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81781693|sp|Q99UJ8|PNP_STAAM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|117940100|sp|Q2FHG4|PNP_STAA3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|117940102|sp|Q2FZ20|PNP_STAA8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611294|sp|A7X1Q8|PNP_STAA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611295|sp|A6QGH3|PNP_STAAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037316|sp|A6U193|PNP_STAA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037317|sp|A5ISF8|PNP_STAA9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037318|sp|A8Z3V4|PNP_STAAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|13701074|dbj|BAB42369.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus N315]
 gi|14247044|dbj|BAB57436.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|57286030|gb|AAW38124.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus COL]
 gi|87126844|gb|ABD21358.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202542|gb|ABD30352.1| polyribonucleotide nucleotidyltransferase, putative [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|147740833|gb|ABQ49131.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946275|gb|ABR52211.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|150374195|dbj|BAF67455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|156721730|dbj|BAF78147.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|160368249|gb|ABX29220.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|253728542|gb|EES97271.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|257789642|gb|EEV27982.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9781]
 gi|257839221|gb|EEV63697.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus A9763]
 gi|257842342|gb|EEV66767.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9719]
 gi|257845914|gb|EEV69943.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9635]
 gi|257849173|gb|EEV73155.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9299]
 gi|257850105|gb|EEV74058.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8115]
 gi|257853746|gb|EEV76705.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A6300]
 gi|257857385|gb|EEV80283.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus A6224]
 gi|257859791|gb|EEV82633.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A5948]
 gi|257863159|gb|EEV85923.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus A5937]
 gi|259160711|gb|EEW45732.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           930918-3]
 gi|259163729|gb|EEW48284.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           D30]
 gi|262075181|gb|ACY11154.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282590619|gb|EFB95696.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A10102]
 gi|282594180|gb|EFB99167.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9765]
 gi|282764759|gb|EFC04884.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8117]
 gi|283470489|emb|CAQ49700.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Staphylococcus aureus subsp. aureus
           ST398]
 gi|285816956|gb|ADC37443.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           04-02981]
 gi|294825070|gb|EFG41492.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9754]
 gi|294968799|gb|EFG44821.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8819]
 gi|297178469|gb|EFH37715.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8796]
 gi|302751097|gb|ADL65274.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304340145|gb|EFM06086.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|312829668|emb|CBX34510.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315131068|gb|EFT87052.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|315198516|gb|EFU28845.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320140909|gb|EFW32756.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320144375|gb|EFW36141.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323441055|gb|EGA98762.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           O11]
 gi|323443924|gb|EGB01535.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           O46]
 gi|329313944|gb|AEB88357.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329727448|gb|EGG63904.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329727820|gb|EGG64271.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 698

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 35/232 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T +++K A G+ LV++GDT +L+TAT   K P   R+     +T  Y       G +P  
Sbjct: 21  TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   KRE   GR G  +    R+I R +R +         QI+        D   + AA
Sbjct: 75  -GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMAA 130

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ +AL      + D           +G +A ++ G + G  I++    E     +D 
Sbjct: 131 MIGSSMAL-----SVSDIP--------FQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDL 177

Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 D+ ++VE  G++E    ++      +    + I  L+  Q+ ++ +
Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITEQEMLEAIFFGHEEIQRLVDFQQQIVDH 225


>gi|254796456|ref|YP_003081292.1| polyribonucleotide nucleotidyltransferase [Neorickettsia risticii
           str. Illinois]
 gi|254589702|gb|ACT69064.1| polyribonucleotide nucleotidyltransferase [Neorickettsia risticii
           str. Illinois]
          Length = 638

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 86/211 (40%), Gaps = 26/211 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR   ++R IS+         GS L   G T  L  ATL    +E+V   I   + 
Sbjct: 199 IRPDGRSLTEIRPISIALDYLPGTHGSALFTRGGTQSLVVATLGSYQDEQVMDDIDGERR 258

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
             +   Y  LP + G      A   R+ G      R+  +A+++V+    +    + +  
Sbjct: 259 ESVLLHYNFLPYAVGEVGALRAPGRREIGHG----RLALKAVKAVLPGKEVFPYTLRLVS 314

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GY 172
           ++ ++DG +  A + G+ +AL D                 +  HVA I+ G++       
Sbjct: 315 EITESDGSSSMATVCGSSLALMDT-------------GVPITKHVAGIAMGLITDGARSA 361

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ 203
            + D+   ED   D+D     T +G IV +Q
Sbjct: 362 ILSDISGDEDMLGDMDFKVAGTRNG-IVALQ 391


>gi|319638374|ref|ZP_07993136.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa C102]
 gi|317400123|gb|EFV80782.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa C102]
          Length = 706

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +++   V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPEPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G              C +       LK HVA I+ G++ 
Sbjct: 432 ITESNGSSSMASVCGG-------------CLSLLSAGVPLKAHVAGIAMGLIL 471


>gi|303286137|ref|XP_003062358.1| 3' exoribonuclease [Micromonas pusilla CCMP1545]
 gi|226455875|gb|EEH53177.1| 3' exoribonuclease [Micromonas pusilla CCMP1545]
          Length = 301

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 64/160 (40%), Gaps = 14/160 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   + R++S+   V   A+GS LVK G T  L  A LE            G +  
Sbjct: 24  RPDGRPLARARDVSVANGVVTSADGSALVKIGRTTALAAAKLEPAP-PEPTAPDVGVVEV 82

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSR------QII 113
              + P    +     A  GR    SQ   R I   LR  +VVDL  L  +      ++ 
Sbjct: 83  TVELPPMCAAS-----ARPGRPTEESQRCARRIEDVLRDANVVDLRKLCIKRGVYAWRVC 137

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL 153
           +D  V+  DGG   AA+     AL D      D  ++ +L
Sbjct: 138 VDVYVLDHDGGILDAALCAVVGALKDAKVPRVDVDDRGKL 177


>gi|49483437|ref|YP_040661.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|257425328|ref|ZP_05601753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257427989|ref|ZP_05604387.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257430622|ref|ZP_05607004.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433382|ref|ZP_05609740.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436224|ref|ZP_05612271.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M876]
 gi|282903829|ref|ZP_06311717.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus C160]
 gi|282905592|ref|ZP_06313447.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908567|ref|ZP_06316397.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282910846|ref|ZP_06318649.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914051|ref|ZP_06321838.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M899]
 gi|282916534|ref|ZP_06324292.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus D139]
 gi|282918973|ref|ZP_06326708.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus C427]
 gi|282924096|ref|ZP_06331772.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus C101]
 gi|283770338|ref|ZP_06343230.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus H19]
 gi|283958017|ref|ZP_06375468.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293501083|ref|ZP_06666934.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293526631|ref|ZP_06671316.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M1015]
 gi|297591281|ref|ZP_06949919.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MN8]
 gi|81651256|sp|Q6GHG1|PNP_STAAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|49241566|emb|CAG40252.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|257271785|gb|EEV03923.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257274830|gb|EEV06317.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257278750|gb|EEV09369.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257281475|gb|EEV11612.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284506|gb|EEV14626.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M876]
 gi|282314068|gb|EFB44460.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus C101]
 gi|282316783|gb|EFB47157.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus C427]
 gi|282319021|gb|EFB49373.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus D139]
 gi|282322119|gb|EFB52443.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M899]
 gi|282325451|gb|EFB55760.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282327629|gb|EFB57912.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282330884|gb|EFB60398.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282595447|gb|EFC00411.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus C160]
 gi|283460485|gb|EFC07575.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus H19]
 gi|283790166|gb|EFC28983.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290920703|gb|EFD97766.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291096088|gb|EFE26349.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|297576167|gb|EFH94883.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MN8]
 gi|312438346|gb|ADQ77417.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|315194162|gb|EFU24555.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus CGS00]
          Length = 698

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 35/232 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T +++K A G+ LV++GDT +L+TAT   K P   R+     +T  Y       G +P  
Sbjct: 21  TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   KRE   GR G  +    R+I R +R +         QI+        D   + AA
Sbjct: 75  -GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMAA 130

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ +AL      + D           +G +A ++ G + G  I++    E     +D 
Sbjct: 131 MIGSSMAL-----SVSDIP--------FQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDL 177

Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 D+ ++VE  G++E    ++      +    + I  L+  Q+ ++ +
Sbjct: 178 EVAGHKDAVNMVEA-GASE---ITEQEMLEAIFFGHEEIQRLVDFQQQIVDH 225


>gi|33866429|ref|NP_897988.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. WH
           8102]
 gi|81574045|sp|Q7U515|PNP_SYNPX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33633207|emb|CAE08412.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           8102]
          Length = 721

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 93/237 (39%), Gaps = 34/237 (14%)

Query: 12  REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64
           REI LT  R +  A GS LV+ GDT +L TAT        + +P+     +  +      
Sbjct: 13  REIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSGGREGIDFLPLICDYEERLYAAG--- 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R  G+  +RE   GR   R+    R+I R +R +         Q++  C  +     
Sbjct: 70  ---RIPGSYQRRE---GRPPERATLTARLIDRPMRPLFPAWLRDDLQVVATCLSLDERVP 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+TGA +A                      G +AA+  G+L    +++  Y E   
Sbjct: 124 ADVLAVTGASIA-------------TLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIER 170

Query: 185 IDVDANFVMTDSGHI-VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            D+D     T  G + VE  G+       +      ++   + I +LIK Q+ ++ +
Sbjct: 171 GDLDLIVAGTPDGVVMVEAGGN----QLPEQDVIEAIDFGYEAICELIKAQEQLLKD 223


>gi|307611640|emb|CBX01326.1| polynucleotide phosphorylase [Legionella pneumophila 130b]
          Length = 729

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 25/204 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R IS+  +  +   GSCL   G+T  +  ATL    + ++   I      
Sbjct: 314 RIDGRDHRTVRPISVRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQILDGISGESRD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      R+  RAL +V+  +      + I  +
Sbjct: 374 RFMLHYNFPPYSVGETGQVGSPKRREIGHG----RLAKRALMAVLPDANEFPYVLRIVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---YPI 174
           + +++G +  A + G  +AL D                 LK  VA ++ G++     Y +
Sbjct: 430 ITESNGSSSMATVCGTSLALMDA-------------GVPLKAPVAGVAMGLIKEGDRYAV 476

Query: 175 V-DLDYGEDSTIDVDANFVMTDSG 197
           + D+   ED   D+D     T+ G
Sbjct: 477 LTDILGDEDHLGDMDFKVAGTEKG 500


>gi|256544705|ref|ZP_05472077.1| polyribonucleotide nucleotidyltransferase [Anaerococcus vaginalis
           ATCC 51170]
 gi|256399594|gb|EEU13199.1| polyribonucleotide nucleotidyltransferase [Anaerococcus vaginalis
           ATCC 51170]
          Length = 702

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 90/221 (40%), Gaps = 36/221 (16%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRSTG 71
           +V++   G CL++ GDT LL TA   +K        P+     +  +     G +P   G
Sbjct: 21  KVAEQTNGECLIRTGDTILLVTAVASDKPREGIDFFPLICDYQEKLYAV---GKIP---G 74

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
             +KRE   G+   ++  I R + R LR +   +     Q+I     +  D         
Sbjct: 75  GFIKRE---GKASDKAILISRQMDRPLRPLFPENFYNDVQVIATPFSVDEDNEPDCMTTI 131

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
           GA +AL               +S +   G VAA+S G + G  IV+ +  E     +D  
Sbjct: 132 GASIALG--------------ISDIPFYGPVAAVSVGYVDGKFIVNPNKDEREISSLDLT 177

Query: 191 FVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              T D+ ++VE  G+ E    S+D     + +A   I ++
Sbjct: 178 VAGTADAINMVEA-GANE---LSEDEMLEAMMVAHAEIKEI 214


>gi|328712784|ref|XP_001945013.2| PREDICTED: exosome complex exonuclease RRP41-like [Acyrthosiphon
           pisum]
          Length = 249

 Score = 39.3 bits (90), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 15/152 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----- 55
           +R  GR+  ++R I     V    +GS  ++ G+T ++         P  IR  +     
Sbjct: 9   LRTDGRRSGELRRIRCKMGVFNQPDGSAYLEQGNTKVVAAIY----GPHEIRTNRAKAPN 64

Query: 56  -HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
               I  +Y M   S   R +R      +  +S E+   + +A+ + +        QI I
Sbjct: 65  DSAVINCQYSMATFSRSERKRRP-----RDNKSAELTLHLKQAMATAIKTDLYPKSQIDI 119

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMED 146
              V+Q+DGG  +  +  A +AL D    ME+
Sbjct: 120 FVQVLQSDGGNYSVCVNAATLALIDAGIAMEE 151


>gi|224000017|ref|XP_002289681.1| polyribonucleotide nucleotidyltransferase [Thalassiosira pseudonana
           CCMP1335]
 gi|220974889|gb|EED93218.1| polyribonucleotide nucleotidyltransferase [Thalassiosira pseudonana
           CCMP1335]
          Length = 721

 Score = 39.3 bits (90), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 23/175 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR+ N++R I     +     GS L   G+T ++ TATL      +K+   I   + 
Sbjct: 282 RIDGRKLNEVRVIDSEAGLFPRVHGSALFTRGETQVVATATLGDSGMRQKID-RISGMEE 340

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P   G   +  A   R+ G     +R +   L S  D        I ++ 
Sbjct: 341 KRFYLQYTFPPSCVGETGRVGAPGRREVGHGNLAERALVPTLPSEADF----PYAIRVES 396

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
            V +++G +  A++ G  +AL D                 +K  +A I+ GML G
Sbjct: 397 LVTESNGSSSMASVCGGCLALMDA-------------GVPIKSPIAGIAMGMLLG 438


>gi|327404361|ref|YP_004345199.1| polyribonucleotide nucleotidyltransferase [Fluviicola taffensis DSM
           16823]
 gi|327319869|gb|AEA44361.1| Polyribonucleotide nucleotidyltransferase [Fluviicola taffensis DSM
           16823]
          Length = 719

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 10/142 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGW- 58
           RL GR+ +++R I           GS +   G+T  LTT TL  K+   + +  T HG  
Sbjct: 319 RLDGRKFDEIRPIWAEVDYLPMVHGSAVFTRGETQSLTTLTLGGKMDEQLIDGVTFHGTE 378

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG        S R+ G       +  RAL+ V  L A  +  I +  D
Sbjct: 379 KFLLHYNFPPFSTGEAKPLRGTSRREIGHGN----LALRALKPV--LPADNAYTIRLVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHD 139
           +++++G +  A +    +AL D
Sbjct: 433 ILESNGSSSMATVCAGTLALMD 454


>gi|54295598|ref|YP_128013.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila
           str. Lens]
 gi|81367664|sp|Q5WT40|PNP_LEGPL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|53755430|emb|CAH16926.1| Polynucleotide phosphorylase (PNPase) [Legionella pneumophila str.
           Lens]
          Length = 729

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 25/204 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R IS+  +  +   GSCL   G+T  +  ATL    + ++   I      
Sbjct: 314 RIDGRDHRTVRPISVRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQILDGISGESRD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      R+  RAL +V+  +      + I  +
Sbjct: 374 RFMLHYNFPPYSVGETGQVGSPKRREIGHG----RLAKRALMAVLPDANEFPYVLRIVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---YPI 174
           + +++G +  A + G  +AL D                 LK  VA ++ G++     Y +
Sbjct: 430 ITESNGSSSMATVCGTSLALMDA-------------GVPLKAPVAGVAMGLIKEGDRYAV 476

Query: 175 V-DLDYGEDSTIDVDANFVMTDSG 197
           + D+   ED   D+D     T+ G
Sbjct: 477 LTDILGDEDHLGDMDFKVAGTEKG 500


>gi|256005694|ref|ZP_05430650.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
           DSM 2360]
 gi|255990325|gb|EEU00451.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
           DSM 2360]
 gi|316940825|gb|ADU74859.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
           DSM 1313]
          Length = 700

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 23/164 (14%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           T ++++ A GS LV++GDT +L+TAT      E V  +  +  +       G +P   G 
Sbjct: 18  TGKLAQLANGSVLVRYGDTVVLSTATASATPREGVDFFPLSVDYEERLYAVGKIP---GG 74

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   G+   ++    R+I R LR +          I+     +  D     AA+ G
Sbjct: 75  FIKRE---GKPSEKAILTARVIDRPLRPLFPKDLRNDVAIVNTVLSVDQDNSPELAALLG 131

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + +A+      + D            G V A+  G++ G  I++
Sbjct: 132 SSIAV-----SISDIP--------FNGPVGAVILGLIDGEVIIN 162


>gi|125972939|ref|YP_001036849.1| polynucleotide phosphorylase/polyadenylase [Clostridium
           thermocellum ATCC 27405]
 gi|281417150|ref|ZP_06248170.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
           JW20]
 gi|187610261|sp|A3DCH7|PNP_CLOTH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|125713164|gb|ABN51656.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
           ATCC 27405]
 gi|281408552|gb|EFB38810.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
           JW20]
          Length = 700

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 23/164 (14%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           T ++++ A GS LV++GDT +L+TAT      E V  +  +  +       G +P   G 
Sbjct: 18  TGKLAQLANGSVLVRYGDTVVLSTATASATPREGVDFFPLSVDYEERLYAVGKIP---GG 74

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   G+   ++    R+I R LR +          I+     +  D     AA+ G
Sbjct: 75  FIKRE---GKPSEKAILTARVIDRPLRPLFPKDLRNDVAIVNTVLSVDQDNSPELAALLG 131

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + +A+      + D            G V A+  G++ G  I++
Sbjct: 132 SSIAV-----SISDIP--------FNGPVGAVILGLIDGEVIIN 162


>gi|294011612|ref|YP_003545072.1| polyribonucleotide nucleotidyltransferase [Sphingobium japonicum
           UT26S]
 gi|292674942|dbj|BAI96460.1| polyribonucleotide nucleotidyltransferase [Sphingobium japonicum
           UT26S]
          Length = 771

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 90/228 (39%), Gaps = 18/228 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR   Q+R I           GS L   G+T  + T TL     E++   +    + 
Sbjct: 316 RIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGLTGLHYE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  V R    GR   R     ++  RAL  V+         I +  D
Sbjct: 376 SFMLHYNFPPYSVGE-VGRFGAPGR---REVGHGKLAWRALHPVLPSKEEFPYTIRVLSD 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +++ D    ++   +   +  +L+G   A+         I D+
Sbjct: 432 ITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKEFAV---------ISDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
              ED   D+D     T++G I  +Q   + A  +Q+ F   L  AK+
Sbjct: 483 LGDEDHLGDMDFKVAGTEAG-ITTMQMDIKVAGITQEIFEVALRQAKE 529


>gi|223040232|ref|ZP_03610510.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Campylobacter
           rectus RM3267]
 gi|222878485|gb|EEF13588.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Campylobacter
           rectus RM3267]
          Length = 735

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 4/139 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGW 58
           +R  GR    +R IS+   +   A GSCL   G T  L  ATL  +    M+   T+ G 
Sbjct: 342 VRADGRGLKDVRPISIETNILPNAHGSCLFTRGQTQALVVATLGTDGDAQMYDMLTEKGA 401

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +T ++       G  V   +     G R      +  RAL   +D  +  + +++   ++
Sbjct: 402 VTDKFMFNYNFPGFSVGEASPLKAPGRRELGHGNLAKRALAPSIDSDSPYTIRLV--SEI 459

Query: 119 IQADGGTRTAAITGAWVAL 137
           ++++G +  A++ G  +AL
Sbjct: 460 LESNGSSSMASVCGGSLAL 478


>gi|188583695|ref|YP_001927140.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium populi
           BJ001]
 gi|226702662|sp|B1ZGS7|PNP_METPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|179347193|gb|ACB82605.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium populi
           BJ001]
          Length = 745

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 94/232 (40%), Gaps = 26/232 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I     V   A GS L   G+T  L  ATL    +E+    +  T   
Sbjct: 316 RIDGRDVKTVRPIVSEVGVLPRAHGSSLFTRGETQALVVATLGTGEDEQFIDALEGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQG--GRSQEI--QRMIGRALRSVVDLSALGSRQII 113
                Y   P S G        +GR G  GR +EI   ++  RA+R V+  +      I 
Sbjct: 376 RFLLHYNFPPYSVGE-------TGRMGSPGR-REIGHGKLAWRAIRPVLPPAHEFPYTIR 427

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  ++ +++G +  A++ G  ++L D    +        +  +L+G   A+         
Sbjct: 428 VVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAV--------- 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
           + D+   ED   D+D     TD G I  +Q   + A  +++     L  AKD
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTDEG-ITSLQMDIKIAGITEEIMRVALAQAKD 529


>gi|154174457|ref|YP_001407821.1| polynucleotide phosphorylase/polyadenylase [Campylobacter curvus
           525.92]
 gi|187470952|sp|A7GX79|PNP_CAMC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|112802675|gb|EAU00019.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Campylobacter
           curvus 525.92]
          Length = 735

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 12/143 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMW-IRNTKHG 57
           +R  GR  +++R IS+   V   A GSCL   G T  L  ATL  +    M+ I   K  
Sbjct: 343 VRADGRALDEVRPISIETNVLPNAHGSCLFTRGQTQALVVATLGTDGDAQMYDILTEKTA 402

Query: 58  WITA---EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
            I      Y     S G     +A   R+ G       +  RAL   +D+++  + +++ 
Sbjct: 403 LIEKFMFNYNFPGFSVGEASPLKAPGRRELGHGN----LAKRALAPSIDINSPYTIRLV- 457

Query: 115 DCDVIQADGGTRTAAITGAWVAL 137
             ++++++G +  A++ G  +AL
Sbjct: 458 -SEILESNGSSSMASVCGGALAL 479


>gi|323350507|ref|ZP_08086169.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           VMC66]
 gi|322123189|gb|EFX94874.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           VMC66]
          Length = 733

 Score = 39.3 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 15/127 (11%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70
           T +V+K A GS +V++G++ +LT AT+ +K+      P+ +   +  +   +Y       
Sbjct: 19  TGQVAKQANGSAVVRYGESTILTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR    +    R+I R +R + +       Q+I        D   + AA+
Sbjct: 73  GGFNKRE---GRPSTDATLTARLIDRPIRPMFEEGFRNEVQVINTVLSYDEDASPQMAAM 129

Query: 131 TGAWVAL 137
            G+ +AL
Sbjct: 130 FGSSLAL 136


>gi|261419469|ref|YP_003253151.1| polynucleotide phosphorylase/polyadenylase [Geobacillus sp.
           Y412MC61]
 gi|319766284|ref|YP_004131785.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp.
           Y412MC52]
 gi|261375926|gb|ACX78669.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp.
           Y412MC61]
 gi|317111150|gb|ADU93642.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp.
           Y412MC52]
          Length = 723

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 17/128 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T  ++K A G+ LV++GDT +L+TAT   +     +N     +T  Y       G +P  
Sbjct: 21  TGELAKQANGAALVRYGDTVVLSTATASREA----KNVDFFPLTVNYEERLYAVGKIP-- 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KRE   GR   ++  + R+I R +R +         Q++     +  D     AA
Sbjct: 75  -GGFIKRE---GRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEVAA 130

Query: 130 ITGAWVAL 137
           + G+ VAL
Sbjct: 131 LIGSSVAL 138


>gi|148556711|ref|YP_001264293.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas wittichii
           RW1]
 gi|187611293|sp|A5VCY9|PNP_SPHWW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148501901|gb|ABQ70155.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas wittichii
           RW1]
          Length = 774

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 91/228 (39%), Gaps = 18/228 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I         A GS L   G+T  ++T TL     E++   +   ++ 
Sbjct: 314 RIDGRDTRTVRPIVAEAHFLPRAHGSALFTRGETQSISTCTLGTKESEQMIDGLNGLRYE 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  V R    GR   R     ++  RAL +V+         I +  D
Sbjct: 374 HFMLHYNFPPYSVGE-VGRFGAPGR---REVGHGKLAWRALHAVLPTKEEFPYTIRLTSD 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +A+ D    ++   +   +  +L+G   A+         I D+
Sbjct: 430 ITESNGSSSMATVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDFAV---------ISDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
              ED   D+D     T  G I  +Q   + A  +++ F   L  AK+
Sbjct: 481 LGDEDHLGDMDFKVAGTSEG-ITTMQMDIKIAGITEEIFKTALLQAKE 527


>gi|269837582|ref|YP_003319810.1| polyribonucleotide nucleotidyltransferase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786845|gb|ACZ38988.1| Polyribonucleotide nucleotidyltransferase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 790

 Score = 39.3 bits (90), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 94/234 (40%), Gaps = 44/234 (18%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW----ITAEY-------GM 65
           T R++  A G+  V++GDT +LTT   E       R  + G     +T +Y       G 
Sbjct: 27  TGRMAGLAHGAVTVRYGDTLVLTTVVGE-------REPREGLDFFPLTVDYEEKMYAAGK 79

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G  +KRE   GR    +    R+  R +R +         Q+I        +   
Sbjct: 80  IP---GGFIKRE---GRPTEAAILAARLTDRPIRPLFPKGYKAEVQVITTVLSADQENAP 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDST 184
              +I GA  AL               LS +   G V A+  G + G  +V+    E   
Sbjct: 134 DVLSIIGASAAL--------------MLSPIPWAGPVGAVRIGDIDGELVVNPT--EHQL 177

Query: 185 IDVDANFVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           ID   + V+  +   ++ V+G A+    S+D F   + LA D I  ++ +Q ++
Sbjct: 178 IDSKLDMVVAGTADAVMMVEGEADE--ISEDRFLEAVLLAHDEIKRIVAMQHEL 229


>gi|218296616|ref|ZP_03497334.1| Polyribonucleotide nucleotidyltransferase [Thermus aquaticus
           Y51MC23]
 gi|218242929|gb|EED09462.1| Polyribonucleotide nucleotidyltransferase [Thermus aquaticus
           Y51MC23]
          Length = 713

 Score = 39.3 bits (90), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R  GR    +R I +   V   A GS +   G+T +L T TL    +E++   +   +  
Sbjct: 328 RADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLGTGRDEQIIDDLGIDETD 387

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +   VS R+ G       +  RALR+V+         I +  D
Sbjct: 388 PFLVHYNFPPFSTGEVKRLRGVSRREVGHGN----LAKRALRAVLPSQEAFPYTIRVVGD 443

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           V++++G +  A +    +AL D 
Sbjct: 444 VLESNGSSSMATVCAGSLALMDA 466


>gi|56419804|ref|YP_147122.1| polynucleotide phosphorylase/polyadenylase [Geobacillus
           kaustophilus HTA426]
 gi|81347597|sp|Q5L0I2|PNP_GEOKA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56379646|dbj|BAD75554.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Geobacillus kaustophilus HTA426]
          Length = 723

 Score = 39.3 bits (90), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 17/128 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T  ++K A G+ LV++GDT +L+TAT   +     +N     +T  Y       G +P  
Sbjct: 21  TGELAKQANGAALVRYGDTVVLSTATASREA----KNVDFFPLTVNYEERLYAVGKIP-- 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KRE   GR   ++  + R+I R +R +         Q++     +  D     AA
Sbjct: 75  -GGFIKRE---GRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEVAA 130

Query: 130 ITGAWVAL 137
           + G+ VAL
Sbjct: 131 LIGSSVAL 138


>gi|269940765|emb|CBI49147.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus TW20]
          Length = 698

 Score = 39.3 bits (90), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 35/232 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T +++K A G+ LV++GDT +L+TAT   K P   R+     +T  Y       G +P  
Sbjct: 21  TGQLAKQANGAVLVRYGDTVVLSTATA-SKEP---RDGDFFPLTVNYEEKMYAAGKIP-- 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   KRE   GR G  +    R+I R +R +         QI+        D   + AA
Sbjct: 75  -GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMAA 130

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ +AL      + D           +G +A ++ G + G  I++    E     +D 
Sbjct: 131 MIGSSMAL-----SVSDIP--------FQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDL 177

Query: 190 NFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 D+ ++VE  G++E    ++      +    + I  L+  Q+ ++ +
Sbjct: 178 EVAGHKDAINMVEA-GASE---ITEQEMLEAIFFGHEEIQRLVDFQQQIVDH 225


>gi|78776629|ref|YP_392944.1| polynucleotide phosphorylase/polyadenylase [Sulfurimonas
           denitrificans DSM 1251]
 gi|123754746|sp|Q30TH2|PNP_SULDN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78497169|gb|ABB43709.1| Polyribonucleotide nucleotidyltransferase [Sulfurimonas
           denitrificans DSM 1251]
          Length = 721

 Score = 39.3 bits (90), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 9/141 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGW 58
           +R  GR  N++R IS++  V   A  SCL   G T  L   T+   +   M+   T  G 
Sbjct: 340 VRADGRALNEIRPISISTNVLPSAHASCLFTRGQTQALVVLTMGGPKDAQMFENLTDEGT 399

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116
               + +     G  V     S   G + +E+    +  RAL  +V+L     R +    
Sbjct: 400 QNENFMVHYNFPGFSVGE--ASPIMGTKRRELGHGNLAKRALEPIVNLEGQTVRLV---S 454

Query: 117 DVIQADGGTRTAAITGAWVAL 137
           ++++++G +  A + G ++AL
Sbjct: 455 EILESNGSSSMATVCGGYMAL 475


>gi|116072761|ref|ZP_01470027.1| RNA binding S1 [Synechococcus sp. BL107]
 gi|116064648|gb|EAU70408.1| RNA binding S1 [Synechococcus sp. BL107]
          Length = 721

 Score = 39.3 bits (90), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 95/236 (40%), Gaps = 32/236 (13%)

Query: 12  REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYG 64
           REI LT  R +  A GS LV+ GDT +L TAT        + +P+     +  +      
Sbjct: 13  REIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSSGRDGIDFLPLICDYEERLYAAG--- 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R  G+ ++REA   R   R+    R+I R +R +         Q++  C  +     
Sbjct: 70  ---RIPGSYMRREA---RPPERATLTCRLIDRPMRPLFPSWMRDDLQVVATCLSLDERVP 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+TGA +A                      G +AA+  G+L    +++  Y E   
Sbjct: 124 ADVLAVTGASIA-------------TLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIER 170

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            D+D     T  G +V V+  A +    +      ++   + I +LIK Q+ ++ +
Sbjct: 171 GDLDLVVAGTADG-VVMVEAGANQ--LPEQDVIEAIDFGYEAIQELIKAQETLLKD 223


>gi|169827176|ref|YP_001697334.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus
           sphaericus C3-41]
 gi|226702661|sp|B1HR13|PNP_LYSSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|168991664|gb|ACA39204.1| Polyribonucleotide nucleotidyltransferase [Lysinibacillus
           sphaericus C3-41]
          Length = 704

 Score = 39.3 bits (90), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 15/125 (12%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++K A G+ LV++GDT +L+TAT+ +        P+ +   +  +     G +P   G 
Sbjct: 22  QLAKQANGAVLVRYGDTSVLSTATMSKSPKPLDFFPLTVNYEERLYAA---GKIP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR   ++    R+I R +R +         Q+I       +D  +  AA+ G
Sbjct: 76  FIKRE---GRPSEKAILASRLIDRPIRPMFPDGFRNEVQVISMVMSNDSDCTSEMAAMVG 132

Query: 133 AWVAL 137
           + +AL
Sbjct: 133 SSLAL 137


>gi|83941735|ref|ZP_00954197.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp. EE-36]
 gi|83847555|gb|EAP85430.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp. EE-36]
          Length = 711

 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 40/212 (18%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR+ +++R+I     +     GS L   G+T  L   TL     E+ +     N K 
Sbjct: 318 RIDGRKTDEIRDIVAETGILPRTHGSSLFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSR 110
            ++   Y   P S G         GR GG     +R IG      RAL++V+  S     
Sbjct: 378 NFML-HYNFPPYSVGE-------VGRVGGPG---RREIGHGKLAWRALQAVLPASTDFPY 426

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
            I +  ++ +++G +  A++ G  +++ D                 LK  VA ++ G++ 
Sbjct: 427 TIRVVSEITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLIL 473

Query: 171 ----GYPIV-DLDYGEDSTIDVDANFVMTDSG 197
                Y I+ D+   ED   D+D     T++G
Sbjct: 474 EDDGSYAILSDILGDEDHLGDMDFKVAGTEAG 505


>gi|297530556|ref|YP_003671831.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. C56-T3]
 gi|297253808|gb|ADI27254.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. C56-T3]
          Length = 723

 Score = 38.9 bits (89), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 17/128 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T  ++K A G+ LV++GDT +L+TAT   +     +N     +T  Y       G +P  
Sbjct: 21  TGELAKQANGAVLVRYGDTVVLSTATASREA----KNVDFFPLTVNYEERLYAVGKIP-- 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KRE   GR   ++  + R+I R +R +         Q++     +  D     AA
Sbjct: 75  -GGFIKRE---GRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEVAA 130

Query: 130 ITGAWVAL 137
           + G+ VAL
Sbjct: 131 LIGSSVAL 138


>gi|316931583|ref|YP_004106565.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris DX-1]
 gi|315599297|gb|ADU41832.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris DX-1]
          Length = 722

 Score = 38.9 bits (89), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 92/231 (39%), Gaps = 24/231 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I     V   A GS L   G+T  L   TL    +E+    +  T   
Sbjct: 316 RIDGRDSKTVRSILAQAGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYVDSLAGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G        +GR GG + +EI   ++  RA+  V+         I +
Sbjct: 376 TFLLHYNFPPYSVGE-------TGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++ +++G +  A++ GA +AL D    ++  +    +  +L+G   A+   +L     
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLSDILG---- 484

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                 ED   D+D     T+ G I  +Q   +    +++     L  AKD
Sbjct: 485 -----DEDHLGDMDFKVAGTEQG-ITSLQMDIKIGGITEEIMKVALGQAKD 529


>gi|83855213|ref|ZP_00948743.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp.
           NAS-14.1]
 gi|83843056|gb|EAP82223.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp.
           NAS-14.1]
          Length = 711

 Score = 38.9 bits (89), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 40/212 (18%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR+ +++R+I     +     GS L   G+T  L   TL     E+ +     N K 
Sbjct: 318 RIDGRKTDEIRDIVAETGILPRTHGSSLFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSR 110
            ++   Y   P S G         GR GG     +R IG      RAL++V+  S     
Sbjct: 378 NFML-HYNFPPYSVGE-------VGRVGGPG---RREIGHGKLAWRALQAVLPASTDFPY 426

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
            I +  ++ +++G +  A++ G  +++ D                 LK  VA ++ G++ 
Sbjct: 427 TIRVVSEITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLIL 473

Query: 171 ----GYPIV-DLDYGEDSTIDVDANFVMTDSG 197
                Y I+ D+   ED   D+D     T++G
Sbjct: 474 EEDGSYAILSDILGDEDHLGDMDFKVAGTEAG 505


>gi|78187489|ref|YP_375532.1| polynucleotide phosphorylase/polyadenylase [Chlorobium luteolum DSM
           273]
 gi|123582727|sp|Q3B2E2|PNP_PELLD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78167391|gb|ABB24489.1| Polyribonucleotide nucleotidyltransferase [Chlorobium luteolum DSM
           273]
          Length = 732

 Score = 38.9 bits (89), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 78/186 (41%), Gaps = 25/186 (13%)

Query: 10  QMREISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY----- 63
           Q + IS+ T R++K A+G+ +V+ GDT ++ T     K P    N     +  EY     
Sbjct: 11  QGKTISIETGRMAKQADGATVVRMGDTMVIATVVSSRKTPSV--NQDFFPLQVEYREKYY 68

Query: 64  --GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
             G  P   G   KREA   R   +     R+I RALR +         Q+II  +VI +
Sbjct: 69  AAGKFP---GGFFKREA---RPSEKEILSARLIDRALRPLFPTGYYHETQVII--NVISS 120

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D     A + G   A    +  + D   +  +S+V  G V     G+    P +D   G 
Sbjct: 121 D-QQNDADVLGGLAASAAIM--VSDIPFENAMSEVRVGRV----NGLFIINPTIDELEGS 173

Query: 182 DSTIDV 187
           D  I +
Sbjct: 174 DIDISI 179



 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 22/149 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           RL GR   Q+R I++   V   A GS L   G+T  L   TL  K        + N+   
Sbjct: 332 RLDGRNLEQVRPITIELGVIPRAHGSALFTRGETQALVAVTLGTKKDAQSVDTLTNSADK 391

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR---ALRSVVDLSALGSRQ--- 111
                Y   P S G  V R   +GR         R IG    A RS + + A G ++   
Sbjct: 392 RFMLHYNFPPFSVGE-VGRLGSTGR---------REIGHGNLAERS-IKMVAPGEQEFPY 440

Query: 112 -IIIDCDVIQADGGTRTAAITGAWVALHD 139
            + I  ++++++G +  A++ G  +AL D
Sbjct: 441 TVRIVSEILESNGSSSMASVCGGTLALMD 469


>gi|297537320|ref|YP_003673089.1| polyribonucleotide nucleotidyltransferase [Methylotenera sp. 301]
 gi|297256667|gb|ADI28512.1| polyribonucleotide nucleotidyltransferase [Methylotenera sp. 301]
          Length = 709

 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R IS+   V     GS L   G+T  L  ATL    +E+V   ++     
Sbjct: 316 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQVIDALQGEFKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  R+L + +   A     + +
Sbjct: 376 RFMLHYNMPPYATGE-------TGRVGTPKRREIGHGRLAKRSLIAALPDQADFDYTMRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++ +++G +  A++ G  +AL D    M+       +  + +G+  A+         +
Sbjct: 429 VSEITESNGSSSMASVCGGCLALMDAGVPMKSLVAGIAMGLIKEGNRVAV---------L 479

Query: 175 VDLDYGEDSTIDVDANFVMTDSG 197
            D+   ED   D+D     T+ G
Sbjct: 480 TDILGDEDHLGDMDFKVAGTEDG 502


>gi|317153855|ref|YP_004121903.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944106|gb|ADU63157.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 754

 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 92/235 (39%), Gaps = 30/235 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
           +R+ GR    +R +S+   V     GSCL + G+T  L  ATL     E++    + +  
Sbjct: 319 LRIDGRDTTTVRALSIETGVLPMTHGSCLFRRGETSALAVATLGSTRDEQRYDSLLGDAT 378

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P   G        S R+ G     +R I   L +  +        I + 
Sbjct: 379 KRFML-HYNFPPYCVGEARMLRGTSRREVGHGALAERAIAPVLPNQDEFPF----TIRVV 433

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            ++++++G +  A++ GA ++L D                 +   VA I+ G LC     
Sbjct: 434 SEIMESNGSSSMASVCGATLSLMDA-------------GVPISAPVAGIAMG-LCKENEQ 479

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
            + + D+   ED+  D+D     T  G I  +Q   + +    D     L  AKD
Sbjct: 480 FFVLTDILGDEDALGDMDFKVAGTRDG-ITSIQMDIKISGIPSDVLRKALYQAKD 533


>gi|126652561|ref|ZP_01724726.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. B14905]
 gi|126590689|gb|EAZ84805.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. B14905]
          Length = 704

 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 15/125 (12%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++K A G+ LV++GDT +L+TAT+ +        P+ +   +  +     G +P   G 
Sbjct: 22  QLAKQANGAVLVRYGDTSVLSTATMSKSPKPLDFFPLTVNYEERLYAA---GKIP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR   ++    R+I R +R +         Q+I       +D  +  AA+ G
Sbjct: 76  FIKRE---GRPSEKAILASRLIDRPIRPMFPDGFRNEVQVISMVMSNDSDCTSEMAAMVG 132

Query: 133 AWVAL 137
           + +AL
Sbjct: 133 SSLAL 137


>gi|332981620|ref|YP_004463061.1| polyribonucleotide nucleotidyltransferase [Mahella australiensis
           50-1 BON]
 gi|332699298|gb|AEE96239.1| polyribonucleotide nucleotidyltransferase [Mahella australiensis
           50-1 BON]
          Length = 708

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 20/149 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R  GR+ +++R IS    +     GS L   G T +LT ATL    +E++   +   +  
Sbjct: 312 RPDGRKLDEIRPISCEVGLIPRVHGSGLFTRGQTQVLTIATLGAPGDEQMLEDLSLEESK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111
                Y M P STG     EA   R  GR     R IG      RAL  ++         
Sbjct: 372 RYIHHYNMPPYSTG-----EAKMMRGPGR-----REIGHGALAERALEPMIPSQEEFPYT 421

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDC 140
           I +  +V+ ++G T  A++ G+ +AL D 
Sbjct: 422 IRLVSEVMSSNGSTSQASVCGSTLALMDA 450


>gi|326914729|ref|XP_003203675.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Meleagris gallopavo]
          Length = 864

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 95/210 (45%), Gaps = 39/210 (18%)

Query: 9   NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAE 62
           N+  E+S + +++++A+G+ +V+ GDT ++ TA  + K      +P+ +   +     A 
Sbjct: 134 NRKMELS-SGKLARFADGAAVVQLGDTAVMVTAVSKTKPSASQFMPLVVDYRQKA---AA 189

Query: 63  YGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            G +P    N ++RE      G   +EI   R+I R++R +  +      QI+  C+++ 
Sbjct: 190 AGRIPT---NYLRREL-----GTTDKEILTSRVIDRSIRPLFPVGYFYDTQIL--CNLLA 239

Query: 121 ADG--GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDL 177
            DG       AI GA  AL               LS +   G V A+  G++ G  +++ 
Sbjct: 240 VDGVNDPDVLAINGASAAL--------------ALSDIPWNGPVGAVRVGLVDGETVINP 285

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207
              + S+  ++          +V ++ +AE
Sbjct: 286 TRKQMSSSTLNLVVAAAPQNQVVMLEATAE 315


>gi|257453578|ref|ZP_05618868.1| polyribonucleotide nucleotidyltransferase [Enhydrobacter aerosaccus
           SK60]
 gi|257449036|gb|EEV23989.1| polyribonucleotide nucleotidyltransferase [Enhydrobacter aerosaccus
           SK60]
          Length = 713

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 27/175 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKHG 57
           R+ GR    +R + +   V  Y  GS L   G+T  L T TL     V M   +  TK  
Sbjct: 318 RIDGRDLQTVRALDIQVGVLPYTHGSALFTRGETQALVTTTLGNSRDVNMIDTLAGTKQD 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y     S G        +GR  G + +EI   R+  R +++++  S      I I
Sbjct: 378 HFMLHYNFPSYSVGE-------TGRDSGPKRREIGHGRLARRGVQAMLPDSDRFPYVIRI 430

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             D+ +++G +  A++ GA +AL D                 LK  VA I+ G++
Sbjct: 431 VSDITESNGSSSMASVCGASLALMDA-------------GVPLKAPVAGIAMGLV 472


>gi|282899414|ref|ZP_06307381.1| 3' exoribonuclease [Cylindrospermopsis raciborskii CS-505]
 gi|281195678|gb|EFA70608.1| 3' exoribonuclease [Cylindrospermopsis raciborskii CS-505]
          Length = 718

 Score = 38.9 bits (89), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 51/237 (21%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGNR 73
           ++  A GS L++ GDT +L TAT  E       +P+ +   +  +         R  G  
Sbjct: 22  LAPQAGGSVLIESGDTAVLVTATRSEAREGVDFLPLTVDYEERLYAAG------RIPGGI 75

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVV------DLSALG---SRQIIIDCDVIQADGG 124
           ++RE   GR   R+    R+I R LR +       DL  +    S   ++  DV+     
Sbjct: 76  MRRE---GRPPERAILTSRLIDRPLRPLFPSWLRDDLQIIALTLSMDELVPPDVL----- 127

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183
               A+TGA +A                ++Q+   G +AA+  G++    I++  Y E  
Sbjct: 128 ----AVTGASIATL--------------IAQIPFYGPMAAVRVGLVGDDFIINPTYAEIE 169

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             D+D     +  G I+   G+ +     +      ++   + + DLI+ Q+D+I+ 
Sbjct: 170 AGDLDLVVAGSPDGVIMVEAGANQ---LPERDIIEAIDFGYEAVRDLIQAQRDLIAE 223


>gi|196014350|ref|XP_002117034.1| hypothetical protein TRIADDRAFT_61054 [Trichoplax adhaerens]
 gi|190580256|gb|EDV20340.1| hypothetical protein TRIADDRAFT_61054 [Trichoplax adhaerens]
          Length = 240

 Score = 38.9 bits (89), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 56/132 (42%), Gaps = 25/132 (18%)

Query: 29  LVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNR------------ 73
           L KF D  +  T  + + V    + +RNTK   I A YG  PR    +            
Sbjct: 7   LPKFYDRLVCRTGAVSQAVGSAYIELRNTK--IICAVYG--PREVAKKQEFNIQATVACE 62

Query: 74  VKREAVSGR------QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
           +K    S R      Q  + +E  ++I +AL+ VV L      QI I   V+Q DG    
Sbjct: 63  LKFATFSCRRRRRHIQDSQEKEYSQIIVQALQPVVRLDKYPKSQIDIFITVLQNDGSVLG 122

Query: 128 AAITGAWVALHD 139
            AIT A VAL D
Sbjct: 123 GAITAASVALAD 134


>gi|307730344|ref|YP_003907568.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1003]
 gi|307584879|gb|ADN58277.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1003]
          Length = 715

 Score = 38.9 bits (89), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  ATL    +E+    +      
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL + +  +      I +
Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALAACLPSADEFGYSIRV 434

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477


>gi|170691678|ref|ZP_02882842.1| Polyribonucleotide nucleotidyltransferase [Burkholderia graminis
           C4D1M]
 gi|170142962|gb|EDT11126.1| Polyribonucleotide nucleotidyltransferase [Burkholderia graminis
           C4D1M]
          Length = 715

 Score = 38.9 bits (89), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  ATL    +E+    +      
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL + +  +      I +
Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALAACLPSADEFGYSIRV 434

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477


>gi|296160625|ref|ZP_06843440.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. Ch1-1]
 gi|295889151|gb|EFG68954.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. Ch1-1]
          Length = 716

 Score = 38.9 bits (89), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  ATL    +E+    +      
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL + +  +      I +
Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALAACLPSADEFGYSIRV 434

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477


>gi|212696535|ref|ZP_03304663.1| hypothetical protein ANHYDRO_01073 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676471|gb|EEB36078.1| hypothetical protein ANHYDRO_01073 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 702

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 33/179 (18%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRSTG 71
           +V++   G CL++ GDT LL TA   +K        P+     +  +     G +P   G
Sbjct: 21  KVAEQTNGECLIRSGDTILLVTAVASDKPREGIDFFPLICDYQEKLYAV---GKIP---G 74

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
             +KRE   G+   ++  I R + R LR +   +     Q+I     +  D         
Sbjct: 75  GFIKRE---GKASDKAILISRQMDRPLRPLFPENFYNDVQVIATPFSVDEDNEPDCMTTI 131

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDL--DYGEDSTIDV 187
           GA +AL               +S +   G VAA+S G + G  IV+   D  E S++D+
Sbjct: 132 GASIALG--------------ISDIPFYGPVAAVSVGYVDGKFIVNPNKDQREKSSLDL 176


>gi|192288867|ref|YP_001989472.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
           palustris TIE-1]
 gi|226702683|sp|B3QAB0|PNP_RHOPT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|192282616|gb|ACE98996.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris TIE-1]
          Length = 722

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 92/231 (39%), Gaps = 24/231 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I     V     GS L   G+T  L   TL    +E+    +  T   
Sbjct: 316 RIDGRDSKTVRNILAQVGVLPRTHGSALFTRGETQALVVTTLGTGEDEQYVDSLSGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G        +GR GG + +EI   ++  RA+  V+         I +
Sbjct: 376 TFLLHYNFPPYSVGE-------TGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++ +++G +  A++ GA +AL D    ++  +    +  +L+G   A+   +L     
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLSDILG---- 484

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                 ED   D+D     T+ G I  +Q   + A  +++     L  AKD
Sbjct: 485 -----DEDHLGDMDFKVAGTEQG-ITSLQMDIKIAGITEEIMKVALGQAKD 529


>gi|262374052|ref|ZP_06067329.1| polyribonucleotide nucleotidyltransferase [Acinetobacter junii
           SH205]
 gi|262311063|gb|EEY92150.1| polyribonucleotide nucleotidyltransferase [Acinetobacter junii
           SH205]
          Length = 697

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 23/173 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I +   V   A GS L   G+T  L T TL       + +T  G  T 
Sbjct: 317 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376

Query: 62  EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116
            + +    P  +     RE+     G + +EI   R+  R +++V+  +      I I  
Sbjct: 377 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           D+ +++G +  A++ GA ++L D                 LK  VA I+ G++
Sbjct: 432 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 471


>gi|33240756|ref|NP_875698.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|81664238|sp|Q7VAZ5|PNP_PROMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33238284|gb|AAQ00351.1| Ribonuclease PH [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 722

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 96/236 (40%), Gaps = 32/236 (13%)

Query: 12  REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYG 64
           REI LT  R +  A GS L++ GDT +L TAT  +       +P+     +  +      
Sbjct: 13  REIRLTTGRYAPQAGGSVLIECGDTAVLVTATQGQGREGADFLPLSCDYEERLYAAG--- 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R  G+ ++RE   GR   R+  I R+I R LR +         Q++  C  +     
Sbjct: 70  ---RIPGSFMRRE---GRPPERATLISRLIDRPLRPLFPNWMRDDIQVVATCLSLDERVP 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+TG+ +A                      G +AA+  G+L    +++  + E   
Sbjct: 124 ADILAVTGSSMA-------------TLLAGIPFYGPMAAVRVGLLGDDFVLNPSFREIER 170

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            D+D     T  G ++   GS +    ++      ++   + + +LIK Q+ ++ +
Sbjct: 171 GDLDLVVAGTPDGVVMVEAGSNQ---LTEQDVIEAIDFGYEAVNELIKAQESILKD 223


>gi|295676033|ref|YP_003604557.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1002]
 gi|295435876|gb|ADG15046.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1002]
          Length = 711

 Score = 38.9 bits (89), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  ATL    +E+    +      
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQSIDALEGEYRE 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL + +  +      I +
Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRV 434

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477


>gi|325849667|ref|ZP_08170870.1| polyribonucleotide nucleotidyltransferase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480008|gb|EGC83086.1| polyribonucleotide nucleotidyltransferase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 702

 Score = 38.9 bits (89), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 33/179 (18%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRSTG 71
           +V++   G CL++ GDT LL TA   +K        P+     +  +     G +P   G
Sbjct: 21  KVAEQTNGECLIRSGDTILLVTAVASDKPREGIDFFPLICDYQEKLYAV---GKIP---G 74

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
             +KRE   G+   ++  I R + R LR +   +     Q+I     +  D         
Sbjct: 75  GFIKRE---GKASDKAILISRQMDRPLRPLFPENFYNDVQVIATPFSVDEDNEPDCMTTI 131

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDL--DYGEDSTIDV 187
           GA +AL               +S +   G VAA+S G + G  IV+   D  E S++D+
Sbjct: 132 GASIALG--------------ISDIPFYGPVAAVSVGYVDGKFIVNPNKDQREKSSLDL 176


>gi|260550547|ref|ZP_05824757.1| polyribonucleotide nucleotidyltransferase [Acinetobacter sp.
           RUH2624]
 gi|260406462|gb|EEW99944.1| polyribonucleotide nucleotidyltransferase [Acinetobacter sp.
           RUH2624]
          Length = 697

 Score = 38.9 bits (89), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 23/173 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I +   V   A GS L   G+T  L T TL       + +T  G  T 
Sbjct: 317 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLSGTKTD 376

Query: 62  EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116
            + +    P  +     RE+     G + +EI   R+  R +++V+  +      I I  
Sbjct: 377 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           D+ +++G +  A++ GA ++L D                 LK  VA I+ G++
Sbjct: 432 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 471


>gi|159903819|ref|YP_001551163.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9211]
 gi|226702676|sp|A9BBJ7|PNP_PROM4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|159888995|gb|ABX09209.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. MIT 9211]
          Length = 722

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 99/235 (42%), Gaps = 34/235 (14%)

Query: 12  REISLTR-RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYG 64
           REI LT  R +  A GS L++ GDT +L TAT          +P+     +  +      
Sbjct: 13  REIRLTTGRYAPQAGGSVLIECGDTAVLVTATQSPGREGADFLPLICDYEERLYAAG--- 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R  G+ ++RE   GR   R+  I R+I R LR +         Q++  C  +     
Sbjct: 70  ---RIPGSFMRRE---GRPPERATLISRLIDRPLRPLFPSWMRDDIQVVATCLSLDERVP 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183
           +   A+T + +A                L+++   G +AA+  G+L    +++  + E  
Sbjct: 124 SDVLAVTASSMAT--------------LLAEIPFYGPMAAVRVGLLGDDFVLNPSFREIE 169

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             D+D     T  G +V ++  A +   S+      ++   + + +LIK Q+ ++
Sbjct: 170 RGDLDLVVAGTPDG-VVMIEAGANQ--LSEQDVIEAVDFGYEAVTELIKAQQSIL 221


>gi|323525432|ref|YP_004227585.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1001]
 gi|323382434|gb|ADX54525.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1001]
          Length = 715

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  ATL    +E+    +      
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL + +  +      I +
Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALAACLPSADEFGYSIRV 434

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477


>gi|209518519|ref|ZP_03267340.1| Polyribonucleotide nucleotidyltransferase [Burkholderia sp. H160]
 gi|209501064|gb|EEA01099.1| Polyribonucleotide nucleotidyltransferase [Burkholderia sp. H160]
          Length = 711

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  ATL    +E+    +      
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQSIDALEGEYRE 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL + +  +      I +
Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRV 434

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477


>gi|91087143|ref|XP_975288.1| PREDICTED: similar to exosomal 3-5 exoribonuclease complex subunit
           Rrp41-like protein [Tribolium castaneum]
          Length = 282

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 5/136 (3%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   + R+I L   V   A+GS  ++   T ++ +     ++P     +  G I  
Sbjct: 42  RADGRTSTEHRKIFLKTGVVSQAKGSAYIELDQTKVIVSVFDPREIPNKTDYSSKGEIYC 101

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           E+   P S   R   +     Q    Q+   ++ +AL S V      + Q+ I   V+  
Sbjct: 102 EFKFAPFSCHKRRLHQ-----QDAEEQQFSAIMKQALESAVFRHEFPNFQVDIYAMVLHN 156

Query: 122 DGGTRTAAITGAWVAL 137
           DG   +AAIT A VAL
Sbjct: 157 DGAALSAAITAAGVAL 172


>gi|254570999|ref|XP_002492609.1| 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the
           exosome [Pichia pastoris GS115]
 gi|238032407|emb|CAY70430.1| 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the
           exosome [Pichia pastoris GS115]
 gi|328353384|emb|CCA39782.1| exosome complex component RRP41 [Pichia pastoris CBS 7435]
          Length = 246

 Score = 38.9 bits (89), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 22/185 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKY---AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG 57
           +R+ GR+ N++R      R++ +   A+GS  V+ G+T ++       +      NT+ G
Sbjct: 9   LRVDGRRWNELRRFYC--RINTHPIVADGSAYVEAGNTKIVCLLNGPHEPTRSQMNTQKG 66

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +  +  + P ST  R K      R   R QE+  ++      VV L       I ++  
Sbjct: 67  SLDIKLHVSPFSTTERRK----VTRNDRRIQELSTILKNTFEQVVILKNYPRTIIEVNVR 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+  DGG   A      +AL D    + D             +++A+S G+     ++DL
Sbjct: 123 VLAQDGGLLAACCNAITLALVDAGIALYD-------------YISAVSAGVFDNQILLDL 169

Query: 178 DYGED 182
           +  E+
Sbjct: 170 NRLEE 174


>gi|296330884|ref|ZP_06873359.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305674402|ref|YP_003866074.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296151889|gb|EFG92763.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305412646|gb|ADM37765.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 705

 Score = 38.9 bits (89), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 9/124 (7%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWITAEY--GMLPRSTGNR 73
           T +++K A G+ ++++GDT +L+TAT  +E  P+        +    Y  G +P   G  
Sbjct: 21  TGQLAKQANGAVMIRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP---GGF 77

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
           +KRE   GR   ++    R+I R +R +         Q+I     +  D  +  AA+ G+
Sbjct: 78  IKRE---GRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEMAAMFGS 134

Query: 134 WVAL 137
            +AL
Sbjct: 135 SLAL 138


>gi|91782608|ref|YP_557814.1| polynucleotide phosphorylase/polyadenylase [Burkholderia xenovorans
           LB400]
 gi|122970578|sp|Q142H7|PNP_BURXL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|91686562|gb|ABE29762.1| Putative polyribonucleotide nucleotidyltransferase [Burkholderia
           xenovorans LB400]
          Length = 716

 Score = 38.5 bits (88), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  ATL    +E+    +      
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL + +  +      I +
Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALAACLPSADEFGYSIRV 434

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477


>gi|50083658|ref|YP_045168.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ADP1]
 gi|81393846|sp|Q6FF12|PNP_ACIAD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|49529634|emb|CAG67346.1| polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Acinetobacter sp. ADP1]
          Length = 697

 Score = 38.5 bits (88), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 23/173 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I +   V   A GS L   G+T  L T TL       + +T  G  T 
Sbjct: 317 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376

Query: 62  EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116
            + +    P  +     RE+     G + +EI   R+  R +++V+  +      I I  
Sbjct: 377 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           D+ +++G +  A++ GA ++L D                 LK  VA I+ G++
Sbjct: 432 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 471


>gi|218245144|ref|YP_002370515.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC
           8801]
 gi|257058170|ref|YP_003136058.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC
           8802]
 gi|226702645|sp|B7K339|PNP_CYAP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218165622|gb|ACK64359.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 8801]
 gi|256588336|gb|ACU99222.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 8802]
          Length = 718

 Score = 38.5 bits (88), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 31/225 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
           ++  A GS L++ GDT +L TAT        + +P+ +   +  +         R  G  
Sbjct: 22  LAPQAGGSVLIQSGDTAVLVTATRATGREGIDFLPLTVDYEERLYAAG------RIPGGF 75

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
           ++RE   GR   ++  I R+I R LR +         QII     +  +      A+TGA
Sbjct: 76  LRRE---GRPPEKAILISRLIDRPLRPLFPQWLRDDIQIIATTLSMDEEVPPDVLAVTGA 132

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
            +A+          + +        G +AA+  G++    I++  Y E    D+D     
Sbjct: 133 SIAV---------IAARIPFF----GPMAAVRVGLIGDDFIINPTYREIEIGDLDLVVAG 179

Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           +  G +V V+  A +    +      ++   + + DLI+ Q+DV+
Sbjct: 180 SPDG-VVMVEAGANQ--LPEQDIIEAIDFGYEAVRDLIQAQRDVM 221


>gi|325124334|gb|ADY83857.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 695

 Score = 38.5 bits (88), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 23/173 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I +   V   A GS L   G+T  L T TL       + +T  G  T 
Sbjct: 315 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 374

Query: 62  EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116
            + +    P  +     RE+     G + +EI   R+  R +++V+  +      I I  
Sbjct: 375 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           D+ +++G +  A++ GA ++L D                 LK  VA I+ G++
Sbjct: 430 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 469


>gi|21674467|ref|NP_662532.1| polynucleotide phosphorylase/polyadenylase [Chlorobium tepidum TLS]
 gi|81790880|sp|Q8KBY3|PNP_CHLTE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|21647655|gb|AAM72874.1| polyribonucleotide nucleotidyltransferase [Chlorobium tepidum TLS]
          Length = 733

 Score = 38.5 bits (88), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 20/148 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR   Q+R IS+   +   A GS L   G+T  L T TL  K      +T    K  
Sbjct: 332 RLDGRTLEQVRPISIELGLIPRAHGSALFTRGETQALVTLTLGTKKDAQSVDTLTDDKDK 391

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111
                Y   P S G         GR GG     +R IG      RA++ V+         
Sbjct: 392 RFMLHYNFPPFSVGE-------IGRVGGAG---RREIGHGNLAERAIKMVMPSEQEFPYT 441

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHD 139
           + +  D+++++G +  A++ G  +A  D
Sbjct: 442 VRLVSDILESNGSSSMASVCGGTLAAMD 469


>gi|293610159|ref|ZP_06692460.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827391|gb|EFF85755.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 697

 Score = 38.5 bits (88), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 23/173 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I +   V   A GS L   G+T  L T TL       + +T  G  T 
Sbjct: 317 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376

Query: 62  EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116
            + +    P  +     RE+     G + +EI   R+  R +++V+  +      I I  
Sbjct: 377 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           D+ +++G +  A++ GA ++L D                 LK  VA I+ G++
Sbjct: 432 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 471


>gi|225871841|ref|YP_002753295.1| polyribonucleotide nucleotidyltransferase [Acidobacterium
           capsulatum ATCC 51196]
 gi|254782698|sp|C1F8M1|PNP_ACIC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225791918|gb|ACO32008.1| polyribonucleotide nucleotidyltransferase [Acidobacterium
           capsulatum ATCC 51196]
          Length = 806

 Score = 38.5 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 86/206 (41%), Gaps = 27/206 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
           +R   R  +++R+I++   V     GS L   G+T  L TATL      +++  +    K
Sbjct: 316 VRPDRRGFDEIRQITIEVGVLPRTHGSALFTRGETQALVTATLGTNDDSQRLETFEGEQK 375

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P S G   +   V  R+ G     +R I   L    D S    R +   
Sbjct: 376 KRFML-HYNFPPFSVGEVGRMTGVGRREVGHGALAERAISAVLPG-EDESPYALRVV--- 430

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GY 172
            D+++++G +  A++ GA +AL D                 LKG VA ++ G++     Y
Sbjct: 431 SDILESNGSSSMASVCGASLALMDA-------------GIPLKGAVAGVAMGLVKEGDEY 477

Query: 173 PIV-DLDYGEDSTIDVDANFVMTDSG 197
            I+ D+   ED   D+D     T  G
Sbjct: 478 AILTDIAGAEDHYGDMDFKVAGTRKG 503


>gi|39933509|ref|NP_945785.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
           palustris CGA009]
 gi|81564252|sp|Q6NCN8|PNP_RHOPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|39647355|emb|CAE25876.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris CGA009]
          Length = 722

 Score = 38.5 bits (88), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 93/231 (40%), Gaps = 24/231 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I     V     GS L   G+T  +   TL    +E+    +  T   
Sbjct: 316 RIDGRDSKTVRNILAQVGVLPRTHGSALFTRGETQAMVVTTLGTGEDEQYVDSLSGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G        +GR GG + +EI   ++  RA+  V+         I +
Sbjct: 376 TFLLHYNFPPYSVGE-------TGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++ +++G +  A++ GA +AL D    ++  +    +  +L+G   A+   +L     
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAVLSDILG---- 484

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                 ED   D+D     T++G I  +Q   + A  +++     L  AKD
Sbjct: 485 -----DEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITEEIMKVALGQAKD 529


>gi|328468614|gb|EGF39614.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           1816]
          Length = 728

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 33/228 (14%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++K A G+ L+++GDT +LT A   +K       P+ +   +  +     G +P   G 
Sbjct: 22  QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR   R+    R+I R +R +         QI      +  D     AA+ G
Sbjct: 76  FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
           + VAL      + D           +G +A +  G + G  +++    +    D+     
Sbjct: 133 SSVAL-----VISDIP--------FEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 193 MT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            T D+ ++VE  G+ E    S++     +    + I  L + Q+ +I+
Sbjct: 180 GTYDAINMVEA-GAKE---VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223


>gi|326533940|dbj|BAJ93743.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 897

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 82/211 (38%), Gaps = 32/211 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R  GR   ++R I+    +   A GS L   G+T  L   TL      +++   +   + 
Sbjct: 447 RSDGRSACELRPINSQCGILPRAHGSALFTRGETQALAVVTLGDYQMAQRIDTLVDTEES 506

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +  A + R+ G     +R +   L   VD        I ++ 
Sbjct: 507 KSFYLQYTFPPSSVGEVGRTGAPNRREIGHGMLAERALEPILPPEVDF----PYTIRVES 562

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------ 170
            + +++G +  A++ G  +AL D                 +K  VA I+ G++       
Sbjct: 563 TITESNGSSSMASVCGGCLALQDA-------------GVPIKFPVAGIAMGLVLDTHEFG 609

Query: 171 --GYPIV--DLDYGEDSTIDVDANFVMTDSG 197
             G P++  D+   ED++ D+D      + G
Sbjct: 610 GDGTPLILSDITGSEDASGDMDFKVAGNEHG 640


>gi|298293847|ref|YP_003695786.1| polyribonucleotide nucleotidyltransferase [Starkeya novella DSM
           506]
 gi|296930358|gb|ADH91167.1| polyribonucleotide nucleotidyltransferase [Starkeya novella DSM
           506]
          Length = 718

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 90/235 (38%), Gaps = 30/235 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR    +R I     V   A GS L   G+T  L  ATL    +E+    +  T  
Sbjct: 317 VRIDGRDTKTVRPIVSEVGVLPRAHGSALFTRGETQALVVATLGTGEDEQFIDSLEGTYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSR 110
                 Y   P S G        +GR G      +R IG      RA+R ++  +     
Sbjct: 377 ERFLLHYNFPPFSVGE-------TGRMGSPG---RREIGHGKLAWRAIRPILPPAHEFPY 426

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
            +    ++++++G +  A + G  +AL D    M        +  +L+G   A+   +L 
Sbjct: 427 TLRAVSEILESNGSSSMATVCGTSLALMDAGVPMRRPVAGIAMGLILEGEKFAVLSDILG 486

Query: 171 GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                     ED   D+D     TD G +  +Q   + A  +++     L  AKD
Sbjct: 487 ---------DEDHLGDMDFKVAGTDKG-VTALQMDIKIAGITEEIMKVALAQAKD 531


>gi|291532399|emb|CBL05512.1| polyribonucleotide nucleotidyltransferase [Megamonas hypermegale
           ART12/1]
          Length = 574

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 10/125 (8%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           T +++K A G+ LV++G+T +L TAT      E V  +     +       G +P   G 
Sbjct: 17  TGKMAKQANGAVLVRYGETVVLVTATASAEPREGVDFFPLTVDYEEKMYAVGKIP---GG 73

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR    +    R+I R +R +         QI+     ++ D     A + G
Sbjct: 74  FIKRE---GRPAESAILNSRLIDRPIRPLFPEGYRNDVQIVATVLSVEQDNAPEIAGMIG 130

Query: 133 AWVAL 137
           A  AL
Sbjct: 131 ASCAL 135


>gi|262375116|ref|ZP_06068350.1| polyribonucleotide nucleotidyltransferase [Acinetobacter lwoffii
           SH145]
 gi|262310129|gb|EEY91258.1| polyribonucleotide nucleotidyltransferase [Acinetobacter lwoffii
           SH145]
          Length = 697

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 23/173 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I +   V   A GS L   G+T  L T TL       + +T  G  T 
Sbjct: 317 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376

Query: 62  EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116
            + +    P  +     RE+     G + +EI   R+  R +++V+  +      I I  
Sbjct: 377 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           D+ +++G +  A++ GA ++L D                 LK  VA I+ G++
Sbjct: 432 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 471


>gi|288574757|ref|ZP_06393114.1| Polyribonucleotide nucleotidyltransferase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570498|gb|EFC92055.1| Polyribonucleotide nucleotidyltransferase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 749

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 97/249 (38%), Gaps = 28/249 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL------EEKVPMWIRNTK 55
           R  GR+ +++R +S    V     GS +   G+T  L TATL      ++ +     N  
Sbjct: 312 RADGRKTDELRSLSCEVDVLPKVHGSAVFTRGETQSLATATLGMLGEDDQLIDGLKHNEP 371

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +      Y   P S G          R+ G       +  RAL  ++         + + 
Sbjct: 372 NKSFLLHYNFPPYSVGEVRPMRGPGRREIGHGA----LAERALTPIIPDDTEFPYVVRVV 427

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPI 174
            D+++++G +  A+I G  +AL                   +K HVA I+ G++  G  +
Sbjct: 428 SDILESNGSSSQASICGGSLAL-------------MSAGVPIKRHVAGIAMGLIKEGDDV 474

Query: 175 V---DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           V   D+   ED   D+D     T  G +  +Q   +    +++     L  AKD    ++
Sbjct: 475 VVLTDIQGLEDHYGDMDFKVAGTREG-VTALQMDNKAGGITREILKQALGQAKDARMAIL 533

Query: 232 KLQKDVISN 240
            + +  ISN
Sbjct: 534 DVMEQAISN 542


>gi|182680095|ref|YP_001834241.1| polyribonucleotide nucleotidyltransferase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|257096681|sp|B2ICY4|PNP_BEII9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|182635978|gb|ACB96752.1| Polyribonucleotide nucleotidyltransferase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 715

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 73/179 (40%), Gaps = 20/179 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR    +R I     +   A GS L   G+T  L  ATL    +E++   +  T  
Sbjct: 317 IRIDGRDVKTVRPILAEVGILPRAHGSALFTRGETQALVVATLGTGEDEQLIDNLEGTYR 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSR 110
                 Y   P S G        +GR G      +R IG      RA+  ++   A    
Sbjct: 377 ERFLLHYNFPPYSVGE-------AGRMGSPG---RREIGHGKLAWRAIHPMLPTPAEFPY 426

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            I +  ++ +++G +  A + G+ +AL D    ++  +    +  +L+G   A+   +L
Sbjct: 427 TIRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGERYAVLSDIL 485


>gi|16800436|ref|NP_470704.1| polynucleotide phosphorylase/polyadenylase [Listeria innocua
           Clip11262]
 gi|81526977|sp|Q92C23|PNP_LISIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|16413841|emb|CAC96599.1| polynucleotide phosphorylase (PNPase) [Listeria innocua Clip11262]
          Length = 723

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 33/228 (14%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++K A G+ L+++GDT +LT A   +K       P+ +   +  +     G +P   G 
Sbjct: 22  QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR   R+    R+I R +R +         QI      +  D     AA+ G
Sbjct: 76  FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
           + VAL      + D           +G +A +  G + G  +++    +    D+     
Sbjct: 133 SSVAL-----VISDIP--------FEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 193 MT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            T D+ ++VE  G+ E    S++     +    + I  L + Q+ +I+
Sbjct: 180 GTYDAINMVEA-GAKE---VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223


>gi|313623917|gb|EFR94027.1| polyribonucleotide nucleotidyltransferase [Listeria innocua FSL
           J1-023]
          Length = 723

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 33/228 (14%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++K A G+ L+++GDT +LT A   +K       P+ +   +  +     G +P   G 
Sbjct: 22  QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR   R+    R+I R +R +         QI      +  D     AA+ G
Sbjct: 76  FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
           + VAL      + D           +G +A +  G + G  +++    +    D+     
Sbjct: 133 SSVAL-----VISDIP--------FEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 193 MT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            T D+ ++VE  G+ E    S++     +    + I  L + Q+ +I+
Sbjct: 180 GTYDAINMVEA-GAKE---VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223


>gi|313619127|gb|EFR90919.1| polyribonucleotide nucleotidyltransferase [Listeria innocua FSL
           S4-378]
          Length = 520

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 33/228 (14%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++K A G+ L+++GDT +LT A   +K       P+ +   +  +     G +P   G 
Sbjct: 22  QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR   R+    R+I R +R +         QI      +  D     AA+ G
Sbjct: 76  FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
           + VAL      + D           +G +A +  G + G  +++    +    D+     
Sbjct: 133 SSVAL-----VISDIP--------FEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 193 MT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            T D+ ++VE  G+ E    S++     +    + I  L + Q+ +I+
Sbjct: 180 GTYDAINMVEA-GAKE---VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223


>gi|302795634|ref|XP_002979580.1| hypothetical protein SELMODRAFT_233365 [Selaginella moellendorffii]
 gi|300152828|gb|EFJ19469.1| hypothetical protein SELMODRAFT_233365 [Selaginella moellendorffii]
          Length = 291

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 14/132 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR   + R  S++      A+GS LVK G+T +L  A LE   P        G ++
Sbjct: 27  VRPDGRPLTRSRPTSVSFNAVSSADGSALVKIGNTTMLAGAKLETMEPAA-DTPDQGCLS 85

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL------GSRQI 112
            ++ ++P     RV+     GR    +  I   +  AL S  VVDL  L       +  I
Sbjct: 86  VDF-VMPPICSPRVR----PGRPAEEAYVITEQLQNALLSSGVVDLRELSIVSGKAAWMI 140

Query: 113 IIDCDVIQADGG 124
            +D   + ADG 
Sbjct: 141 YLDVYCLDADGS 152


>gi|189459946|ref|ZP_03008731.1| hypothetical protein BACCOP_00579 [Bacteroides coprocola DSM 17136]
 gi|189433319|gb|EDV02304.1| hypothetical protein BACCOP_00579 [Bacteroides coprocola DSM 17136]
          Length = 727

 Score = 38.5 bits (88), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 10/143 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           RL GR+  ++R I        Y  GS +   G+T  L+T T    L+EK+   + +    
Sbjct: 319 RLDGRKTTEIRPIWCEVGPLPYPHGSSIFTRGETQSLSTVTLGTKLDEKIVDDVLDQHKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +        +++   D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPADYPYCVRVV--SD 432

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           +++++G +  A +    +AL D 
Sbjct: 433 ILESNGSSSMATVCAGTLALMDA 455


>gi|126640439|ref|YP_001083423.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           ATCC 17978]
          Length = 662

 Score = 38.5 bits (88), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 23/173 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R + +   V + A GS L   G+T  L T TL       + +T  G  T 
Sbjct: 282 RIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 341

Query: 62  EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116
            + +    P  +     RE+     G + +EI   R+  R +++V+  +      I I  
Sbjct: 342 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 396

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           D+ +++G +  A++ GA ++L D                 LK  VA I+ G++
Sbjct: 397 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 436


>gi|217964522|ref|YP_002350200.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Listeria monocytogenes HCC23]
 gi|254824610|ref|ZP_05229611.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL J1-194]
 gi|254852619|ref|ZP_05241967.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL R2-503]
 gi|254932354|ref|ZP_05265713.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           HPB2262]
 gi|255520235|ref|ZP_05387472.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           FSL J1-175]
 gi|300765429|ref|ZP_07075411.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL N1-017]
 gi|254782725|sp|B8DFZ6|PNP_LISMH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|217333792|gb|ACK39586.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Listeria monocytogenes HCC23]
 gi|258605934|gb|EEW18542.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL R2-503]
 gi|293583910|gb|EFF95942.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           HPB2262]
 gi|293593848|gb|EFG01609.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL J1-194]
 gi|300513866|gb|EFK40931.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL N1-017]
 gi|307570912|emb|CAR84091.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           L99]
 gi|332311774|gb|EGJ24869.1| Polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           str. Scott A]
          Length = 723

 Score = 38.5 bits (88), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 33/228 (14%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++K A G+ L+++GDT +LT A   +K       P+ +   +  +     G +P   G 
Sbjct: 22  QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR   R+    R+I R +R +         QI      +  D     AA+ G
Sbjct: 76  FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
           + VAL      + D           +G +A +  G + G  +++    +    D+     
Sbjct: 133 SSVAL-----VISDIP--------FEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 193 MT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            T D+ ++VE  G+ E    S++     +    + I  L + Q+ +I+
Sbjct: 180 GTYDAINMVEA-GAKE---VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223


>gi|290893558|ref|ZP_06556541.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL J2-071]
 gi|290556903|gb|EFD90434.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL J2-071]
          Length = 723

 Score = 38.5 bits (88), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 33/228 (14%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++K A G+ L+++GDT +LT A   +K       P+ +   +  +     G +P   G 
Sbjct: 22  QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR   R+    R+I R +R +         QI      +  D     AA+ G
Sbjct: 76  FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
           + VAL      + D           +G +A +  G + G  +++    +    D+     
Sbjct: 133 SSVAL-----VISDIP--------FEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 193 MT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            T D+ ++VE  G+ E    S++     +    + I  L + Q+ +I+
Sbjct: 180 GTYDAINMVEA-GAKE---VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223


>gi|300676790|gb|ADK26666.1| polyribonucleotide nucleotidyltransferase 1 [Zonotrichia
           albicollis]
 gi|300676888|gb|ADK26760.1| polyribonucleotide nucleotidyltransferase 1 [Zonotrichia
           albicollis]
          Length = 765

 Score = 38.5 bits (88), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 24/138 (17%)

Query: 11  MREISLTR-RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEY 63
            R++ L+  +++K+A+GS +V+ GDT ++ TA  + K      +P+ +   +     A  
Sbjct: 35  FRKMELSSGKLAKFADGSAVVQLGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AAA 91

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           G +P    N ++RE      G   +EI   R+I R++R +         QI+  C+++  
Sbjct: 92  GRIPT---NYLRREL-----GSTDKEILTSRVIDRSIRPLFPAGYFYDTQIL--CNLLAV 141

Query: 122 DG--GTRTAAITGAWVAL 137
           DG       AI GA  AL
Sbjct: 142 DGVNDPDILAINGASAAL 159


>gi|297828842|ref|XP_002882303.1| hypothetical protein ARALYDRAFT_896385 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328143|gb|EFH58562.1| hypothetical protein ARALYDRAFT_896385 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 922

 Score = 38.5 bits (88), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 86/211 (40%), Gaps = 32/211 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNT----KH 56
           R  GR  +++R I+    +   A GS L   G+T  L   TL +K +   I N     ++
Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +  A S R+ G     +R +   L S  D        I ++ 
Sbjct: 507 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDF----PYTIRVES 562

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------ 170
            VI+++G +  A++ G  +AL D                 +K  VA I+ GM+       
Sbjct: 563 TVIESNGSSSMASVCGGCLALQDA-------------GVPVKCSVAGIAMGMVWDTEEFG 609

Query: 171 --GYPIV--DLDYGEDSTIDVDANFVMTDSG 197
             G P++  D+   ED++ D+D      + G
Sbjct: 610 GDGSPLILSDITGAEDASGDMDFKVAGNEDG 640


>gi|283769562|ref|ZP_06342458.1| polyribonucleotide nucleotidyltransferase [Bulleidia extructa
           W1219]
 gi|283103830|gb|EFC05216.1| polyribonucleotide nucleotidyltransferase [Bulleidia extructa
           W1219]
          Length = 732

 Score = 38.5 bits (88), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 98/229 (42%), Gaps = 35/229 (15%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72
           ++K A GS +V++ DT +L+TAT   +     ++T    +T  Y       G +P   G 
Sbjct: 22  IAKQAGGSVVVRYNDTTILSTATASSQA----KDTDFFPLTVLYQEKMYAAGKIP---GG 74

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            ++RE   GR    +    R+I R +R +         Q++        D  +  A++ G
Sbjct: 75  FLRRE---GRPSEHATLTARLIDRPIRPLFAEGFRNEVQVVNTVLSNDPDASSEMASLFG 131

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
           + +AL  C+  +              G VA +    + G  +++    E++  D+     
Sbjct: 132 SSLAL--CISDIP-----------FNGPVAGVQVVRVNGEFLINPSVEENAKGDLHLTVA 178

Query: 193 MTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            T    ++VE  G+ E    S++   A L    + I  L ++Q++VI++
Sbjct: 179 GTKQAINMVEA-GAKE---VSEETMLAALQFGHEAIQKLCEIQEEVIAS 223


>gi|254829912|ref|ZP_05234567.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           10403S]
          Length = 723

 Score = 38.5 bits (88), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 33/228 (14%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++K A G+ L+++GDT +LT A   +K       P+ +   +  +     G +P   G 
Sbjct: 22  QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR   R+    R+I R +R +         QI      +  D     AA+ G
Sbjct: 76  FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
           + VAL      + D           +G +A +  G + G  +++    +    D+     
Sbjct: 133 SSVAL-----VISDIP--------FEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 193 MT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            T D+ ++VE  G+ E    S++     +    + I  L + Q+ +I+
Sbjct: 180 GTYDAINMVEA-GAKE---VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223


>gi|114798182|ref|YP_762114.1| polynucleotide phosphorylase/polyadenylase [Hyphomonas neptunium
           ATCC 15444]
 gi|123128295|sp|Q0BWM9|PNP_HYPNA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|114738356|gb|ABI76481.1| polyribonucleotide nucleotidyltransferase [Hyphomonas neptunium
           ATCC 15444]
          Length = 713

 Score = 38.5 bits (88), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 94/233 (40%), Gaps = 30/233 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR+ +Q+R I           GS L   G+T  +  ATL    +E+    +  TK  
Sbjct: 317 RIDGRKLDQIRPIVAEAGFLPRTHGSSLFTRGETQAICVATLGTSDDEQYIDGLDGTKKE 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111
                Y   P S G        +GR GG     +R IG      RAL++V+         
Sbjct: 377 KFMLHYNFPPYSVGE-------TGRMGGAG---RREIGHGKLAWRALKAVLPKHEDFPYT 426

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
           I +  ++ +++G +  A + G  +A+ D    +    +   +  +L+G   A+       
Sbjct: 427 IRMVSEITESNGSSSMATVCGCSLAMMDAGVPLTRPVSGIAMGLILEGSEFAV------- 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
             + D+   ED   D+D     T++G +  +Q   + A  ++D     L  AK
Sbjct: 480 --LSDILGDEDHLGDMDFKVAGTENG-VTSLQMDIKVAGITKDIMGKALEQAK 529


>gi|332851858|ref|ZP_08433761.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           6013150]
 gi|332867443|ref|ZP_08437603.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           6013113]
 gi|332873102|ref|ZP_08441059.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           6014059]
 gi|322506580|gb|ADX02034.1| Polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           1656-2]
 gi|323516459|gb|ADX90840.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332729643|gb|EGJ60979.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           6013150]
 gi|332733983|gb|EGJ65127.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           6013113]
 gi|332738614|gb|EGJ69484.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           6014059]
          Length = 695

 Score = 38.5 bits (88), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 23/173 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R + +   V + A GS L   G+T  L T TL       + +T  G  T 
Sbjct: 315 RIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 374

Query: 62  EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116
            + +    P  +     RE+     G + +EI   R+  R +++V+  +      I I  
Sbjct: 375 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           D+ +++G +  A++ GA ++L D                 LK  VA I+ G++
Sbjct: 430 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 469


>gi|302791854|ref|XP_002977693.1| hypothetical protein SELMODRAFT_176463 [Selaginella moellendorffii]
 gi|300154396|gb|EFJ21031.1| hypothetical protein SELMODRAFT_176463 [Selaginella moellendorffii]
          Length = 291

 Score = 38.5 bits (88), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 14/132 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR   + R  S++      A+GS LVK G+T +L  A LE   P        G ++
Sbjct: 27  VRPDGRPLTRSRPTSVSFNAVSSADGSALVKIGNTTMLAGAKLETMEPAA-DTPDQGCLS 85

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL------GSRQI 112
            ++ ++P     RV+     GR    +  I   +  AL S  VVDL  L       +  I
Sbjct: 86  VDF-VMPPICSPRVR----PGRPAEEAYVITEQLQNALLSSGVVDLRELSIVSGKAAWMI 140

Query: 113 IIDCDVIQADGG 124
            +D   + ADG 
Sbjct: 141 YLDVYCLDADGS 152


>gi|222626193|gb|EEE60325.1| hypothetical protein OsJ_13416 [Oryza sativa Japonica Group]
          Length = 248

 Score = 38.5 bits (88), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 79/201 (39%), Gaps = 27/201 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R  S TR     A GS     GDT +L            +   K G    
Sbjct: 5   RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAA----------VYGPKPG---T 51

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
             G  P      V  + ++G+ G + +E +  + R L+S+  L+   +    +   V+  
Sbjct: 52  RKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGN 111

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG----HVA-AISCGMLC-GYPIV 175
           DG              +  L  +  C   ++ S V  G    H+A AI CG+L  G  I+
Sbjct: 112 DGSVS--------FCRNVLLSIVSGCLLDYEHSLVFAGIPLKHLAVAIGCGVLEDGEVIL 163

Query: 176 DLDYGEDSTIDVDANFVMTDS 196
           D +  E+  +   A+ V  +S
Sbjct: 164 DTNKAEEQQLKSFAHLVFPNS 184


>gi|148651980|ref|YP_001279073.1| polynucleotide phosphorylase/polyadenylase [Psychrobacter sp.
           PRwf-1]
 gi|187611275|sp|A5WBT2|PNP_PSYWF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148571064|gb|ABQ93123.1| Polyribonucleotide nucleotidyltransferase [Psychrobacter sp.
           PRwf-1]
          Length = 704

 Score = 38.5 bits (88), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 19/171 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  + +R + +   V  Y  GS L   G+T  L T TL     + + ++  G I  
Sbjct: 320 RIDGRDLDTVRALDIQVGVLPYTHGSALFTRGETQALVTTTLGNSRDVNLIDSLAGTIQD 379

Query: 62  EYGM---LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
            + +    P  +     RE V  R   R     R+  R +++++  S      I +  ++
Sbjct: 380 HFMLHYNFPHYSVGETGREGVPKR---REIGHGRLARRGVQAMLPDSDRFPYVIRVVSEI 436

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            +++G +  A++ GA +AL D                 LK  VA I+ G++
Sbjct: 437 TESNGSSSMASVCGASLALMDA-------------GVPLKAPVAGIAMGLV 474


>gi|215277019|ref|NP_001135843.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Rattus
           norvegicus]
 gi|149044835|gb|EDL98021.1| polyribonucleotide nucleotidyltransferase 1 [Rattus norvegicus]
          Length = 784

 Score = 38.5 bits (88), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 87/200 (43%), Gaps = 38/200 (19%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++++A+G  +V+ GDT ++ TA  + K      +P+ +   +     A  G +P    N
Sbjct: 62  KLARFADGCAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AAAGRIPT---N 115

Query: 73  RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128
            ++RE      G   +EI   R+I R++R +         Q++  C+++  DG       
Sbjct: 116 YLRREI-----GSSDKEILTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEPDIL 168

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AI GA  AL               LS +   G V A+  GM+ G  +V+    E S+  +
Sbjct: 169 AINGASAAL--------------SLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTL 214

Query: 188 DANFVMTDSGHIVEVQGSAE 207
           +          IV ++ SAE
Sbjct: 215 NLVVAGAPKSQIVMLEASAE 234


>gi|160915053|ref|ZP_02077266.1| hypothetical protein EUBDOL_01061 [Eubacterium dolichum DSM 3991]
 gi|158432852|gb|EDP11141.1| hypothetical protein EUBDOL_01061 [Eubacterium dolichum DSM 3991]
          Length = 735

 Score = 38.5 bits (88), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 16/128 (12%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-------PMWIRNTKHGWITAEYGMLPRS 69
           T  ++K A GS LV++GDT +L+ AT  ++        P+ +   +  +     G +P  
Sbjct: 30  TGEIAKQAGGSVLVRYGDTVVLSAATASKQAKEGIDFFPLTVSFEEKLY---SVGKIP-- 84

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  ++RE   GR    +    RMI R +R +         Q++     +  D  T  AA
Sbjct: 85  -GGFLRRE---GRPSEHATLTARMIDRPIRPLFADGFRNEVQVVNTVLSVDQDCSTEMAA 140

Query: 130 ITGAWVAL 137
           + GA +AL
Sbjct: 141 MFGASLAL 148


>gi|46907557|ref|YP_013946.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47094124|ref|ZP_00231847.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           str. 4b H7858]
 gi|226223932|ref|YP_002758039.1| polynucleotide phosphorylase [Listeria monocytogenes Clip81459]
 gi|81403374|sp|Q71ZZ1|PNP_LISMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|259534135|sp|C1L2N7|PNP_LISMC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|46880825|gb|AAT04123.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47017509|gb|EAL08319.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           str. 4b H7858]
 gi|225876394|emb|CAS05103.1| polynucleotide phosphorylase (PNPase) [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 723

 Score = 38.5 bits (88), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 33/228 (14%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++K A G+ L+++GDT +LT A   +K       P+ +   +  +     G +P   G 
Sbjct: 22  QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR   R+    R+I R +R +         QI      +  D     AA+ G
Sbjct: 76  FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
           + VAL      + D           +G +A +  G + G  +++    +    D+     
Sbjct: 133 SSVAL-----VISDIP--------FEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 193 MT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            T D+ ++VE  G+ E    S++     +    + I  L + Q+ +I+
Sbjct: 180 GTYDAINMVEA-GAKE---VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223


>gi|224476402|ref|YP_002634008.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254782735|sp|B9DPE0|PNP_STACT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|222421009|emb|CAL27823.1| polyribonucleotide nucleotidyltransferase [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 701

 Score = 38.5 bits (88), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 106/236 (44%), Gaps = 36/236 (15%)

Query: 12  REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYG 64
           R +S+ T +++K A G+ LV++GDT +L+TAT  ++       P+ +   +  +     G
Sbjct: 15  RPLSIETGQMAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLMVNYEEKMYAA---G 71

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G   KRE   GR    +    R+I R +R +         QII        D  
Sbjct: 72  KIP---GGFKKRE---GRPADEATLTARLIDRPIRPLFPKGYRHDVQIINMVLSADPDCS 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD--LDYGED 182
              AA+ G+ +AL      + D    FQ      G +A ++ G + G  +++  ++  E 
Sbjct: 126 PEMAAMIGSSMAL-----SVSDIP--FQ------GPIAGVNVGYIDGEYVINPTVEQKEV 172

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           S +D++      D+ ++VE  G++E    ++      +    + I  L+  Q+++I
Sbjct: 173 SRLDLEVAG-HRDAVNMVEA-GASE---ITEKEMLDAIFFGHEEIKRLVDFQQEII 223


>gi|169634530|ref|YP_001708266.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           SDF]
 gi|226702588|sp|B0VLR7|PNP_ACIBS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169153322|emb|CAP02433.1| polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Acinetobacter baumannii]
          Length = 697

 Score = 38.5 bits (88), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 23/173 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R + +   V + A GS L   G+T  L T TL       + +T  G  T 
Sbjct: 317 RIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376

Query: 62  EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116
            + +    P  +     RE+     G + +EI   R+  R +++V+  +      I I  
Sbjct: 377 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           D+ +++G +  A++ GA ++L D                 LK  VA I+ G++
Sbjct: 432 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 471


>gi|315282187|ref|ZP_07870650.1| polyribonucleotide nucleotidyltransferase [Listeria marthii FSL
           S4-120]
 gi|313614173|gb|EFR87854.1| polyribonucleotide nucleotidyltransferase [Listeria marthii FSL
           S4-120]
          Length = 723

 Score = 38.5 bits (88), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 33/228 (14%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++K A G+ L+++GDT +LT A   +K       P+ +   +  +     G +P   G 
Sbjct: 22  QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR   R+    R+I R +R +         QI      +  D     AA+ G
Sbjct: 76  FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
           + VAL      + D           +G +A +  G + G  +++    +    D+     
Sbjct: 133 SSVAL-----VISDIP--------FEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 193 MT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            T D+ ++VE  G+ E    S++     +    + I  L + Q+ +I+
Sbjct: 180 GTYDAINMVEA-GAKE---VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223


>gi|198427597|ref|XP_002131069.1| PREDICTED: similar to LOC495942 protein [Ciona intestinalis]
          Length = 247

 Score = 38.5 bits (88), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 7/148 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN---TKHGW 58
           R  GR+ +++R +     V   A+GS  ++ G+T +L       +    +R+       +
Sbjct: 13  RFDGRKPSELRRVRCNMGVFTQADGSAYIEQGNTKVLAAIYGPHEASNNMRSRVCLDKCF 72

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           I  E+     S+  R KR     R   + +++   I +   + V        QI I   V
Sbjct: 73  INCEFSQAMFSSAERKKR----SRGDRKGKDMSAHIKQTFEAAVRTQLYPRSQIDIYLQV 128

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMED 146
           + +DG    A +  A +AL D    M+D
Sbjct: 129 LHSDGSLYCACVNAATLALIDAGIAMKD 156


>gi|15605776|ref|NP_213153.1| polynucleotide phosphorylase/polyadenylase [Aquifex aeolicus VF5]
 gi|81343315|sp|O66593|PNP_AQUAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|2982946|gb|AAC06562.1| polyribonucleotide nucleotidyltransferase [Aquifex aeolicus VF5]
          Length = 775

 Score = 38.5 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 55/212 (25%), Positives = 85/212 (40%), Gaps = 25/212 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWI 59
           +R+ GR+ N++R I +     +   G+ +   G T    T TL      + I     G +
Sbjct: 312 VRIDGRKPNEIRPIWIEVHPFERPHGNAIFTRGQTQAYVTVTLGTPDEALIIETIAEGEV 371

Query: 60  ----TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y M P S G          R+ G     +R I   L    +   +    I + 
Sbjct: 372 FKRFMLHYSMPPFSVGEAKPWGPPRRREIGHGALAERAIEPLLPPEEEYPFI----IRVV 427

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---Y 172
            D+++++G T  A + GA +AL D    M+D  NK         HVA I+ G++     Y
Sbjct: 428 SDILESNGSTSMATVCGASLALFDAGVPMKD--NK---------HVAGIAMGLILEKDRY 476

Query: 173 PIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQ 203
            I+ D+   ED   D+D     T  G I  VQ
Sbjct: 477 VILSDILGDEDHLGDMDFKVAGTKDG-ITSVQ 507


>gi|169797384|ref|YP_001715177.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           AYE]
 gi|184156693|ref|YP_001845032.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           ACICU]
 gi|213155801|ref|YP_002317846.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           AB0057]
 gi|215484824|ref|YP_002327059.1| Polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           AB307-0294]
 gi|239500905|ref|ZP_04660215.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           AB900]
 gi|260556276|ref|ZP_05828495.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           ATCC 19606]
 gi|301348030|ref|ZP_07228771.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           AB056]
 gi|301510806|ref|ZP_07236043.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           AB058]
 gi|301594566|ref|ZP_07239574.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           AB059]
 gi|187471097|sp|A3M1M7|PNP_ACIBT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702585|sp|B7H0Z1|PNP_ACIB3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702586|sp|B7I3U1|PNP_ACIB5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702587|sp|B2I2Q0|PNP_ACIBC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702589|sp|B0VEA3|PNP_ACIBY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169150311|emb|CAM88208.1| polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Acinetobacter baumannii AYE]
 gi|183208287|gb|ACC55685.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Acinetobacter baumannii ACICU]
 gi|193076200|gb|ABO10821.2| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           ATCC 17978]
 gi|213054961|gb|ACJ39863.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           AB0057]
 gi|213985856|gb|ACJ56155.1| Polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           AB307-0294]
 gi|260410331|gb|EEX03630.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           ATCC 19606]
          Length = 697

 Score = 38.5 bits (88), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 23/173 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R + +   V + A GS L   G+T  L T TL       + +T  G  T 
Sbjct: 317 RIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376

Query: 62  EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116
            + +    P  +     RE+     G + +EI   R+  R +++V+  +      I I  
Sbjct: 377 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           D+ +++G +  A++ GA ++L D                 LK  VA I+ G++
Sbjct: 432 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 471


>gi|30678905|ref|NP_187021.2| RIF10 (resistant to inhibition with FSM 10); 3'-5'-exoribonuclease/
           RNA binding / nucleic acid binding / polyribonucleotide
           nucleotidyltransferase [Arabidopsis thaliana]
 gi|25991185|gb|AAN76771.1|AF450480_1 polynucleotide phosphorylase [Arabidopsis thaliana]
 gi|332640453|gb|AEE73974.1| polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana]
          Length = 922

 Score = 38.5 bits (88), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 86/211 (40%), Gaps = 32/211 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNT----KH 56
           R  GR  +++R I+    +   A GS L   G+T  L   TL +K +   I N     ++
Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +  A S R+ G     +R +   L S  D        I ++ 
Sbjct: 507 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDF----PYTIRVES 562

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------ 170
            VI+++G +  A++ G  +AL D                 +K  VA I+ GM+       
Sbjct: 563 TVIESNGSSSMASVCGGCLALQDA-------------GVPVKCSVAGIAMGMVWDTEEFG 609

Query: 171 --GYPIV--DLDYGEDSTIDVDANFVMTDSG 197
             G P++  D+   ED++ D+D      + G
Sbjct: 610 GDGSPLILSDITGAEDASGDMDFKVAGNEDG 640


>gi|85714171|ref|ZP_01045160.1| polyribonucleotide nucleotidyltransferase [Nitrobacter sp. Nb-311A]
 gi|85699297|gb|EAQ37165.1| polyribonucleotide nucleotidyltransferase [Nitrobacter sp. Nb-311A]
          Length = 723

 Score = 38.5 bits (88), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 93/231 (40%), Gaps = 24/231 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I     V   A GS L   G+T  +   TL    +E+    +  T   
Sbjct: 321 RIDGRDVKTVRAIVAEVGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDSLSGTYKE 380

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G        +GR GG + +EI   ++  RA+  V+         I +
Sbjct: 381 TFLLHYNFPPYSVGE-------TGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTIRV 433

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++ +++G +  A + G+ +AL D    ++  +    +  +L+G   A+   +L     
Sbjct: 434 VSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRYAVLSDILG---- 489

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                 ED   D+D     T+SG I  +Q   + A  +++     L  AKD
Sbjct: 490 -----DEDHLGDMDFKVAGTESG-ITSLQMDIKIAGITEEIMKVALAQAKD 534


>gi|16803371|ref|NP_464856.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           EGD-e]
 gi|47095916|ref|ZP_00233519.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           str. 1/2a F6854]
 gi|224501726|ref|ZP_03670033.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           FSL R2-561]
 gi|254827592|ref|ZP_05232279.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL N3-165]
 gi|254898504|ref|ZP_05258428.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           J0161]
 gi|254912005|ref|ZP_05262017.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           J2818]
 gi|254936332|ref|ZP_05268029.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           F6900]
 gi|284801716|ref|YP_003413581.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           08-5578]
 gi|284994858|ref|YP_003416626.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           08-5923]
 gi|81509180|sp|Q8Y7F1|PNP_LISMO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|16410747|emb|CAC99409.1| polynucleotide phosphorylase (PNPase) [Listeria monocytogenes
           EGD-e]
 gi|47015662|gb|EAL06592.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           str. 1/2a F6854]
 gi|258599969|gb|EEW13294.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL N3-165]
 gi|258608922|gb|EEW21530.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           F6900]
 gi|284057278|gb|ADB68219.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           08-5578]
 gi|284060325|gb|ADB71264.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           08-5923]
 gi|293589970|gb|EFF98304.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           J2818]
          Length = 723

 Score = 38.5 bits (88), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 33/228 (14%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++K A G+ L+++GDT +LT A   +K       P+ +   +  +     G +P   G 
Sbjct: 22  QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR   R+    R+I R +R +         QI      +  D     AA+ G
Sbjct: 76  FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
           + VAL      + D           +G +A +  G + G  +++    +    D+     
Sbjct: 133 SSVAL-----VISDIP--------FEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 193 MT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            T D+ ++VE  G+ E    S++     +    + I  L + Q+ +I+
Sbjct: 180 GTYDAINMVEA-GAKE---VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223


>gi|291296202|ref|YP_003507600.1| 3' exoribonuclease [Meiothermus ruber DSM 1279]
 gi|290471161|gb|ADD28580.1| 3' exoribonuclease [Meiothermus ruber DSM 1279]
          Length = 714

 Score = 38.5 bits (88), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 23/173 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R  GR   Q+R I +   V     GS +   G+T +L   TL      + V      T+ 
Sbjct: 325 RADGRTPTQVRPIWIESNVLPKTHGSAIFSRGETQVLGVVTLGTGRDAQLVDDLGIETED 384

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++   Y   P STG   +   VS R+ G       +  R LR+V+         I +  
Sbjct: 385 PFLV-HYNFPPYSTGEVRRLRGVSRREVGHGN----LAKRGLRAVLPSREEFPYTIRVVG 439

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           DV++++G +  A +    +AL D                 LK HVA ++ G++
Sbjct: 440 DVLESNGSSSMATVCAGCLALLDA-------------GVPLKKHVAGVAMGLV 479


>gi|116872762|ref|YP_849543.1| polynucleotide phosphorylase/polyadenylase [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|123460999|sp|A0AID2|PNP_LISW6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116741640|emb|CAK20764.1| polynucleotide phosphorylase (PNPase) [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 723

 Score = 38.5 bits (88), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 33/228 (14%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++K A G+ L+++GDT +LT A   +K       P+ +   +  +     G +P   G 
Sbjct: 22  QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR   R+    R+I R +R +         QI      +  D     AA+ G
Sbjct: 76  FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
           + VAL      + D           +G +A +  G + G  +++    +    D+     
Sbjct: 133 SSVAL-----VISDIP--------FEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179

Query: 193 MT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            T D+ ++VE  G+ E    S++     +    + I  L + Q+ +I+
Sbjct: 180 GTYDAINMVEA-GAKE---VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223


>gi|77919161|ref|YP_356976.1| polynucleotide phosphorylase/polyadenylase [Pelobacter carbinolicus
           DSM 2380]
 gi|123574179|sp|Q3A4A1|PNP_PELCD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|77545244|gb|ABA88806.1| polynucleotide phosphorylase/cytidylate kinase [Pelobacter
           carbinolicus DSM 2380]
          Length = 699

 Score = 38.5 bits (88), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 8/144 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR +N +R I+    +   A GS L   G+T  L  A L    +E+    +++ + 
Sbjct: 312 VRIDGRDKNTIRPITCEIGLLPRAHGSALFTRGETQALVAAALGTSKDEQRMDNVQSMEF 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P   G    R     R+ G     +R I + L +  D        + +  
Sbjct: 372 KKFMLHYNFPPFCVGETSMRLFPGRREIGHGMLAERSIAQVLPNHDDF----PYTLRVVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDC 140
           D+++++G +  A++ GA +AL D 
Sbjct: 428 DILESNGSSSMASVCGASLALMDA 451


>gi|255075435|ref|XP_002501392.1| predicted protein [Micromonas sp. RCC299]
 gi|226516656|gb|ACO62650.1| predicted protein [Micromonas sp. RCC299]
          Length = 291

 Score = 38.1 bits (87), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 15/124 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R +S  R   K  +G C V+ GDT +L   + + + P   R  + G IT
Sbjct: 25  LRVDGRGPFDTRPVSY-RFGPK--DGMCEVQLGDTRVLAVVSAKLEPPSGARGNE-GTIT 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSAL----GSRQIII 114
                 P ++ N        GR G ++QE+  ++ RA+R    VD+ +L    G R   +
Sbjct: 81  INVEFSPMASPN-----FEPGRPGEQAQELALVLERAIRETGAVDVESLCVLAGRRVWHV 135

Query: 115 DCDV 118
            CDV
Sbjct: 136 RCDV 139


>gi|186683767|ref|YP_001866963.1| polynucleotide phosphorylase/polyadenylase [Nostoc punctiforme PCC
           73102]
 gi|226702669|sp|B2J2V3|PNP_NOSP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|186466219|gb|ACC82020.1| 3' exoribonuclease [Nostoc punctiforme PCC 73102]
          Length = 718

 Score = 38.1 bits (87), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 101/237 (42%), Gaps = 53/237 (22%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGNR 73
           ++  A GS L++ GDT +L TAT  +       +P+ +   +  +         R  G  
Sbjct: 22  LAPQAGGSVLIESGDTSVLVTATRSQAREGIDFLPLTVDYEERLYAAG------RIPGGI 75

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVV------DLSALG---SRQIIIDCDVIQADGG 124
           ++RE   GR   ++    R+I R +R +       DL  +    S   ++  DV+     
Sbjct: 76  MRRE---GRPPEKTILTSRLIDRPMRPLFPSWLRDDLQIIALTLSMDELVPPDVL----- 127

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDS 183
               A+TGA +A                ++Q+   G +AA+  G++    I++  Y E  
Sbjct: 128 ----AVTGASIAT--------------LIAQIPFNGPMAAVRVGLVGDDFIINPTYAEIE 169

Query: 184 TIDVDANFVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
             D+D   V+  S H ++ V+  A +    +      ++   + + DLIK Q+D+++
Sbjct: 170 AGDLD--LVVAGSPHGVIMVEAGANQ--LPERDIIEAIDFGYEAVRDLIKAQQDLVA 222


>gi|7413616|emb|CAB85703.1| putative polynucleotide phosphorylase [Arabidopsis thaliana]
          Length = 922

 Score = 38.1 bits (87), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 86/211 (40%), Gaps = 32/211 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNT----KH 56
           R  GR  +++R I+    +   A GS L   G+T  L   TL +K +   I N     ++
Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +  A S R+ G     +R +   L S  D        I ++ 
Sbjct: 507 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDF----PYTIRVES 562

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------ 170
            VI+++G +  A++ G  +AL D                 +K  VA I+ GM+       
Sbjct: 563 TVIESNGSSSMASVCGGCLALQDA-------------GVPVKCSVAGIAMGMVWDTEEFG 609

Query: 171 --GYPIV--DLDYGEDSTIDVDANFVMTDSG 197
             G P++  D+   ED++ D+D      + G
Sbjct: 610 GDGSPLILSDITGAEDASGDMDFKVAGNEDG 640


>gi|26991392|ref|NP_746817.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida
           KT2440]
 gi|81439660|sp|Q88DW0|PNP_PSEPK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|24986460|gb|AAN70281.1|AE016668_7 polyribonucleotide nucleotidyltransferase [Pseudomonas putida
           KT2440]
          Length = 701

 Score = 38.1 bits (87), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 27/175 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDNKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++++++  + +    I +
Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M             K  VA I+ G++
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLV 470


>gi|8928246|sp|O87792|PNP_PSEPU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|3650364|emb|CAA77048.1| polyribonucleotide nucleotidyltransferase [Pseudomonas putida]
          Length = 701

 Score = 38.1 bits (87), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 27/175 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDNKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++++++  + +    I +
Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M             K  VA I+ G++
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLV 470


>gi|299771757|ref|YP_003733783.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. DR1]
 gi|298701845|gb|ADI92410.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. DR1]
          Length = 697

 Score = 38.1 bits (87), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 23/173 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I +   V   A GS L   G+T  L T TL       + +T  G  T 
Sbjct: 317 RIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLSGTKTD 376

Query: 62  EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116
            + +    P  +     RE+     G + +EI   R+  R +++V+  +      I I  
Sbjct: 377 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           D+ +++G +  A++ GA ++L D                 LK  VA I+ G++
Sbjct: 432 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 471


>gi|255319690|ref|ZP_05360898.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           radioresistens SK82]
 gi|262380027|ref|ZP_06073182.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           radioresistens SH164]
 gi|255303219|gb|EET82428.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           radioresistens SK82]
 gi|262298221|gb|EEY86135.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           radioresistens SH164]
          Length = 699

 Score = 38.1 bits (87), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 23/173 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R + +   V + A GS L   G+T  L TATL       + +T  G  T 
Sbjct: 317 RIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTATLGNTRDALMVDTLSGTKTD 376

Query: 62  EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116
            + +    P  +     RE+     G + +EI   R+  R +++V+         + +  
Sbjct: 377 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPPVDRFPYVLRVVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           D+ +++G +  A++ GA +AL D                 LK  VA I+ G++
Sbjct: 432 DITESNGSSSMASVCGASLALMDA-------------GVPLKAPVAGIAMGLV 471


>gi|6006870|gb|AAF00646.1|AC009540_23 putative polynucleotide phosphorylase [Arabidopsis thaliana]
 gi|6091752|gb|AAF03462.1|AC009327_1 putative polynucleotide phosphorylase [Arabidopsis thaliana]
          Length = 948

 Score = 38.1 bits (87), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 88/211 (41%), Gaps = 32/211 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNT----KH 56
           R  GR  +++R I+    +   A GS L   G+T  L   TL +K +   I N     ++
Sbjct: 473 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 532

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +  A S R+ G     +R +   L S  D        I ++ 
Sbjct: 533 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDF----PYTIRVES 588

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------ 170
            VI+++G +  A++ G  +AL D    ++ CS            VA I+ GM+       
Sbjct: 589 TVIESNGSSSMASVCGGCLALQDAGVPVK-CS------------VAGIAMGMVWDTEEFG 635

Query: 171 --GYPIV--DLDYGEDSTIDVDANFVMTDSG 197
             G P++  D+   ED++ D+D      + G
Sbjct: 636 GDGSPLILSDITGAEDASGDMDFKVAGNEDG 666


>gi|325697461|gb|EGD39347.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK160]
          Length = 733

 Score = 38.1 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 99/231 (42%), Gaps = 35/231 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70
           T +V+K A GS +V++G++ +LT AT+ +K+      P+ +   +  +   +Y       
Sbjct: 19  TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR    +    R+I R +R +         Q+I        D   + AA+
Sbjct: 73  GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
            G+ +AL               +S +   G +A +  G + G  I++    +     ++ 
Sbjct: 130 FGSSLAL--------------SISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLEL 175

Query: 190 NFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
               T D+ ++VE  G+ E    S+D     L    + + +LI  Q+++++
Sbjct: 176 TVAGTKDAINMVE-SGAKE---LSEDVMLEALLKGHEAVKELIAFQEEIVA 222


>gi|323138133|ref|ZP_08073206.1| polyribonucleotide nucleotidyltransferase [Methylocystis sp. ATCC
           49242]
 gi|322396595|gb|EFX99123.1| polyribonucleotide nucleotidyltransferase [Methylocystis sp. ATCC
           49242]
          Length = 717

 Score = 38.1 bits (87), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 96/233 (41%), Gaps = 26/233 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR    +R I     V     GS L   G+T  L  ATL    +E+    +  T  
Sbjct: 315 IRIDGRDVKTVRPIVAEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQFVDSLEGTYK 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQG--GRSQEI--QRMIGRALRSVVDLSALGSRQI 112
                 Y   P S G        +GR G  GR +EI   ++  RA+R ++  +A     +
Sbjct: 375 ERFLLHYNFPPYSVGE-------TGRMGSPGR-REIGHGKLAWRAIRPMLPAAAEFPYTL 426

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            +  ++ +++G +  A + G  +AL D    ++  +    +  +L+G   A+        
Sbjct: 427 RVVSEITESNGSSSMATVCGTSLALMDAGVPLKAPTAGIAMGLILEGERFAV-------- 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
            + D+   ED   D+D     T +G +  +Q   + A  +++     L  AKD
Sbjct: 479 -LSDILGDEDHLGDMDFKVAGTSNG-VTSLQMDIKIAGITEEIMKVALAQAKD 529


>gi|299534733|ref|ZP_07048063.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus
           fusiformis ZC1]
 gi|298729821|gb|EFI70366.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus
           fusiformis ZC1]
          Length = 704

 Score = 38.1 bits (87), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 15/125 (12%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++K A G+ LV++GDT +L TAT+ +        P+ +   +  +     G +P   G 
Sbjct: 22  QLAKQANGAALVRYGDTSVLATATMSKSPKPLDFFPLTVNYEERLYAA---GKIP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR   ++    R+I R +R +         Q+I        D  +  AA+ G
Sbjct: 76  FIKRE---GRPSEKAILASRLIDRPIRPMFPDGFRNEVQVISMVMSNDPDCTSEMAAMVG 132

Query: 133 AWVAL 137
           + +AL
Sbjct: 133 SSLAL 137


>gi|125718838|ref|YP_001035971.1| polynucleotide phosphorylase/polyadenylase [Streptococcus sanguinis
           SK36]
 gi|187611302|sp|A3CQG6|PNP_STRSV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|125498755|gb|ABN45421.1| Polyribonucleotide nucleotidyltransferase, putative [Streptococcus
           sanguinis SK36]
          Length = 733

 Score = 38.1 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 99/231 (42%), Gaps = 35/231 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70
           T +V+K A GS +V++G++ +LT AT+ +K+      P+ +   +  +   +Y       
Sbjct: 19  TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR    +    R+I R +R +         Q+I        D   + AA+
Sbjct: 73  GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
            G+ +AL               +S +   G +A +  G + G  I++    +     ++ 
Sbjct: 130 FGSSLAL--------------SISDIPFNGPIAGVQVGYVDGKFIINPSKEQKEVSLLEL 175

Query: 190 NFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
               T D+ ++VE  G+ E    S+D     L    + + +LI  Q+++++
Sbjct: 176 TVAGTKDAINMVE-SGAKE---LSEDIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|315122006|ref|YP_004062495.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495408|gb|ADR52007.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 699

 Score = 38.1 bits (87), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 8/144 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR    +R+IS    + +   GS     G T  +   TL    +E+    +  T+ 
Sbjct: 312 IRMDGRDVETVRDISAQVGLLQRTHGSSFFSRGSTQAIVVVTLGTKEDEQYVDSLAGTQR 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  A S R+ G      R+  RA+  ++  +A     + I  
Sbjct: 372 NDFMMHYNFFPFSVGEVGRIGAPSRREIGHG----RLARRAIHPILPQAAQFPYTLRIVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDC 140
           ++  ++G +  A + GA +AL D 
Sbjct: 428 EITGSNGSSSMATVCGASLALMDA 451


>gi|262280783|ref|ZP_06058566.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262257683|gb|EEY76418.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 697

 Score = 38.1 bits (87), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 23/173 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I +   V   A GS L   G+T  L T TL       + +T  G  T 
Sbjct: 317 RIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLSGTKTD 376

Query: 62  EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116
            + +    P  +     RE+     G + +EI   R+  R +++V+  +      I I  
Sbjct: 377 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           D+ +++G +  A++ GA ++L D                 LK  VA I+ G++
Sbjct: 432 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 471


>gi|121609766|ref|YP_997573.1| polynucleotide phosphorylase/polyadenylase [Verminephrobacter
           eiseniae EF01-2]
 gi|187611331|sp|A1WLP8|PNP_VEREI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|121554406|gb|ABM58555.1| 3' exoribonuclease [Verminephrobacter eiseniae EF01-2]
          Length = 757

 Score = 38.1 bits (87), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGW-- 58
           R+ GR    +R I +   V   A GS L   G+T  L  ATL  E+    I      +  
Sbjct: 317 RIDGRDTRTVRPIEIRAGVLPRAHGSALFTRGETQALAVATLGTERDAQRIDALAGEYDD 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL +V+         + +  +
Sbjct: 377 RFMLHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVAVLPTKEEFPYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A++ G  ++L D    M             K HVA I+ G++
Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLI 471


>gi|218259530|ref|ZP_03475243.1| hypothetical protein PRABACTJOHN_00901 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225061|gb|EEC97711.1| hypothetical protein PRABACTJOHN_00901 [Parabacteroides johnsonii
           DSM 18315]
          Length = 743

 Score = 38.1 bits (87), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 10/143 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           RL GR+  ++R I +         GS +   G+T  L+T TL    +EK+   + N    
Sbjct: 319 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKADEKMIDDVLNHGKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG       V  R+ G       +  RAL+ ++        ++I   D
Sbjct: 379 RFLLHYNFPPFSTGEAKASRGVGRREIGHGN----LAHRALKRMIPTDYPYVVRVI--SD 432

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           +++++G +  A +    +AL D 
Sbjct: 433 ILESNGSSSMATVCAGTLALRDA 455


>gi|171058181|ref|YP_001790530.1| polynucleotide phosphorylase/polyadenylase [Leptothrix cholodnii
           SP-6]
 gi|226702660|sp|B1Y823|PNP_LEPCP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|170775626|gb|ACB33765.1| Polyribonucleotide nucleotidyltransferase [Leptothrix cholodnii
           SP-6]
          Length = 767

 Score = 38.1 bits (87), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 23/173 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R I +   V     GS L   G+T  L  ATL      +++     + + 
Sbjct: 317 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTDQDSQRIDALAGDFRD 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++   Y M P +TG   +      R+ G      R+  RAL  ++         I +  
Sbjct: 377 SFLF-HYNMPPFATGEVGRMGTTKRRETGHG----RLAKRALVPLLPPKDEFGYTIRVVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           ++ +++G +  A++ G  +A+ D    M             K HVA I+ G++
Sbjct: 432 EITESNGSSSMASVCGGCLAMMDAGVPM-------------KAHVAGIAMGLI 471


>gi|332365788|gb|EGJ43545.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK355]
          Length = 733

 Score = 38.1 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 99/231 (42%), Gaps = 35/231 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70
           T +V+K A GS +V++G++ +LT AT+ +K+      P+ +   +  +   +Y       
Sbjct: 19  TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR    +    R+I R +R +         Q+I        D   + AA+
Sbjct: 73  GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
            G+ +AL               +S +   G +A +  G + G  I++    +     ++ 
Sbjct: 130 FGSSLAL--------------SISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLEL 175

Query: 190 NFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
               T D+ ++VE  G+ E    S+D     L    + + +LI  Q+++++
Sbjct: 176 TVAGTKDAINMVE-SGAKE---LSEDIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|320450042|ref|YP_004202138.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus
           SA-01]
 gi|320150211|gb|ADW21589.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus
           SA-01]
          Length = 714

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 25/174 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKV--PMWIRNTK 55
           R  GR    +R I +   V     GS +   G+T +L T TL    +E++   + I  T+
Sbjct: 328 RADGRTPKDLRPIWIEVDVLPRTHGSAVFTRGETQVLGTVTLGTGRDEQIIDDLGIDETE 387

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
              +   Y   P STG   +   VS R+ G       +  RAL++V+         I + 
Sbjct: 388 KFLV--HYNFPPFSTGEVKRLRGVSRREIGHGN----LAKRALKAVLPPEEAFPYTIRVV 441

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            DV++++G +  A +    +AL D                 LK  VA ++ G++
Sbjct: 442 GDVLESNGSSSMATVCAGCLALMDA-------------GVPLKAPVAGVAMGLV 482


>gi|311252595|ref|XP_003125174.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Sus scrofa]
          Length = 487

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 40/187 (21%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++++A+GS +V+ GDT ++ TA  + K      +P+ +   +     A  G +P    N
Sbjct: 62  KLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AAAGRIPT---N 115

Query: 73  RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128
            ++RE      G   +EI   R+I R++R +         QI+  C+++  DG       
Sbjct: 116 YLRREI-----GSSDKEILTSRVIDRSIRPLFPAGYFYDTQIL--CNLLAVDGVNEPDVL 168

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AI GA VAL               LS +   G + A+  GM+ G  +V+    E S+  +
Sbjct: 169 AINGASVALS--------------LSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTL 214

Query: 188 DANFVMT 194
             N V+T
Sbjct: 215 --NLVVT 219


>gi|104780032|ref|YP_606530.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas entomophila
           L48]
 gi|122985959|sp|Q1IF39|PNP_PSEE4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|95109019|emb|CAK13715.1| polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Pseudomonas entomophila L48]
          Length = 701

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++++++  + +    I +
Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M+       +  V +G   A+   +L
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDIL 483


>gi|224047480|ref|XP_002196971.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1 [Taeniopygia
           guttata]
          Length = 936

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 92/202 (45%), Gaps = 42/202 (20%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++K+A+GS +V+ GDT ++ TA  + K      +P+ +   +     A  G +P    N
Sbjct: 215 KLAKFADGSAVVQLGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AAAGRIPT---N 268

Query: 73  RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTA 128
            ++RE      G   +EI   R+I R++R +         QI+  C+++  DG       
Sbjct: 269 YLRREL-----GSTDKEILTSRVIDRSIRPLFPAGYFYDTQIL--CNLLAVDGVNDPDIL 321

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AI GA  AL               LS +   G + A+  G++ G  +++    E S+  +
Sbjct: 322 AINGASAAL--------------ALSDIPWNGPIGAVRVGLVDGETVINPTRKEMSSSAL 367

Query: 188 DANFVMTDSGH--IVEVQGSAE 207
             N V+  + H  +V ++ +AE
Sbjct: 368 --NLVVAGALHSQVVMLEATAE 387


>gi|313680573|ref|YP_004058312.1| polyribonucleotide nucleotidyltransferase [Oceanithermus profundus
           DSM 14977]
 gi|313153288|gb|ADR37139.1| polyribonucleotide nucleotidyltransferase [Oceanithermus profundus
           DSM 14977]
          Length = 721

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 84/205 (40%), Gaps = 26/205 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R  GR   ++R I +   V   + GS +   G+T +L T TL    +E++   +   +  
Sbjct: 326 RADGRGPAEIRPIWIEVDVLPRSHGSAIFTRGETQVLGTVTLGTGRDEQIIDDLGLDESE 385

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +   VS R+ G       +  RAL+ ++         I +  D
Sbjct: 386 DFLVHYNFPPYSTGEVKRLRGVSRREVGHGN----LAKRALKPMLPEKDAFPYTIRVVGD 441

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GYPI 174
           V++++G +  A +    +AL D                 +K  VA I+ G++    G P+
Sbjct: 442 VLESNGSSSMATVCAGCLALMDA-------------GVPIKKPVAGIAMGLVKPEEGEPV 488

Query: 175 V--DLDYGEDSTIDVDANFVMTDSG 197
           V  D+   ED+  D+D     T  G
Sbjct: 489 VLTDILGMEDALGDMDFKVTGTRDG 513


>gi|160947658|ref|ZP_02094825.1| hypothetical protein PEPMIC_01593 [Parvimonas micra ATCC 33270]
 gi|158446792|gb|EDP23787.1| hypothetical protein PEPMIC_01593 [Parvimonas micra ATCC 33270]
          Length = 702

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 11/131 (8%)

Query: 12  REISLT-RRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           RE+ +T  +V++ A GSCLV+ G+T +L  A       E V  +  +          G +
Sbjct: 12  RELKVTIGKVAEQANGSCLVQCGETVVLVNACASKEPREGVDFFPLSCDFEEKLYSVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   +S    R+I R LR +         Q+I     ++ D    
Sbjct: 72  P---GGFIKRE---GRPSEKSILTSRLIDRPLRPLFPEGYRNDVQVIATALSVEQDNQPD 125

Query: 127 TAAITGAWVAL 137
             A+ G+ +AL
Sbjct: 126 ILAMIGSSIAL 136


>gi|95929621|ref|ZP_01312363.1| Polyribonucleotide nucleotidyltransferase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95134318|gb|EAT15975.1| Polyribonucleotide nucleotidyltransferase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 699

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 8/173 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR+ N++R IS    V   A GS L   G+T  L + TL    +E+    I+  + 
Sbjct: 312 IRIDGRKMNEIRPISCEVGVLPRAHGSALFTRGETQALVSTTLGTASDEQRMDNIQGMEF 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P   G    R     R+ G     +R   + +    D        + I  
Sbjct: 372 KKFMLHYNFPPFCVGETSMRLFPGRREIGHGMLAERSATKIMPEFDDF----PYTVRIVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           ++++++G +  A++ GA ++L D     +D      +  + +G   AI   +L
Sbjct: 428 EILESNGSSSMASVCGASMSLMDAGVPAKDAVAGIAMGLIKEGDDIAILSDIL 480


>gi|296132896|ref|YP_003640143.1| polyribonucleotide nucleotidyltransferase [Thermincola sp. JR]
 gi|296031474|gb|ADG82242.1| polyribonucleotide nucleotidyltransferase [Thermincola potens JR]
          Length = 735

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 16/128 (12%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T R++K A G+   ++GDT +L TAT     P          +T +Y       G +P  
Sbjct: 41  TGRMAKQATGAVFCRYGDTAVLVTATCS---PEPREGIDFFPLTVDYEERLYAVGKIP-- 95

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KRE   GR   ++    R+I R +R +          I+     +  D      A
Sbjct: 96  -GGFIKRE---GRPSEKAILSSRLIDRPIRPLFPKGYRNDVHIVATVLSVDQDNAPDVTA 151

Query: 130 ITGAWVAL 137
           I GA  AL
Sbjct: 152 INGASAAL 159


>gi|262370055|ref|ZP_06063382.1| polyribonucleotide nucleotidyltransferase [Acinetobacter johnsonii
           SH046]
 gi|262315094|gb|EEY96134.1| polyribonucleotide nucleotidyltransferase [Acinetobacter johnsonii
           SH046]
          Length = 697

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 23/173 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I +   V   A GS L   G+T  L T TL       + +T  G  T 
Sbjct: 317 RIDGRDTKTVRAIDVQVGVLGRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376

Query: 62  EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116
            + +    P  +     RE+     G + +EI   R+  R +++V+  +      I I  
Sbjct: 377 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           D+ +++G +  A++ GA ++L D                 LK  VA I+ G++
Sbjct: 432 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 471


>gi|161527941|ref|YP_001581767.1| exosome complex RNA-binding protein Rrp42 [Nitrosopumilus maritimus
           SCM1]
 gi|160339242|gb|ABX12329.1| 3' exoribonuclease [Nitrosopumilus maritimus SCM1]
          Length = 272

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 96/236 (40%), Gaps = 32/236 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-T 60
           R+ GR  ++ RE+S+       A GS  V+ GDT ++    ++   P      K  +I T
Sbjct: 24  RVDGRALDESREVSIETNAIPKANGSARVRLGDTEVVCGVKIQPDRPFPDTGDKGLFICT 83

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------I 112
           AE  +LP S          +G  G    E+ R++ R +R   ++D+S L   +      +
Sbjct: 84  AE--LLPLS-----HPTVETGPPGPEVIELARVVDRGIRESHMIDVSQLVIEKDKSVIGV 136

Query: 113 IIDCDVIQADGG-------TRTAAI----TGAWVALHDCLQHMEDCSNKFQLSQVLKGHV 161
             D  V+  DG          TAA+    +  W  + D    +E       ++ +     
Sbjct: 137 FADNVVVDYDGNLFDACSYAATAALLSSKSPKWNWVDDAPALVEGEEVDVPITTIP---- 192

Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
            +++ G +  + IVD +  E +++D          G+I  +Q   +   F+QD   
Sbjct: 193 VSVTMGKIGNHIIVDPNGDEWASMDARITITSDSDGNICALQKGGDDG-FTQDEIV 247


>gi|255003073|ref|ZP_05278037.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale
           str. Puerto Rico]
          Length = 805

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 25/174 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  +Q+R I +   +   + GS L   GDT  L    L    +E+V       +  
Sbjct: 320 RVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVITALGTPQDEQVVDGFDGDRRE 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIID 115
                Y     + G     EA + R  GR +EI   ++  RA+  V+   A     I + 
Sbjct: 380 RFLLHYNFPSYAVG-----EAAALRPPGR-REIGHGKLAWRAIHPVLPTKADFPYTIRVV 433

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            ++ ++DG +  A + GA +AL D                 LK  VA I+ G++
Sbjct: 434 SEITESDGSSSMATVCGASLALMDT-------------GVPLKSSVAGIAMGLI 474


>gi|114778695|ref|ZP_01453507.1| polyribonucleotide nucleotidyltransferase [Mariprofundus
           ferrooxydans PV-1]
 gi|114551057|gb|EAU53619.1| polyribonucleotide nucleotidyltransferase [Mariprofundus
           ferrooxydans PV-1]
          Length = 705

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 79/214 (36%), Gaps = 45/214 (21%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR  NQ+R I     V     GS L   G+T  L T TL  +  M +  +  G    
Sbjct: 326 RIDGRATNQVRAIDCQVGVLPRTHGSALFTRGETQALVTITLGTESDMQMTESLEGVAKQ 385

Query: 59  -ITAEYGMLPRSTGN------RVKREAVSGRQGGRSQEI----QRMIGRALRSVVDLSAL 107
                Y   P S G         +RE   GR   R  E         G A+RSV      
Sbjct: 386 RFMLHYNFPPYSVGEARRFGPPGRREIGHGRLARRGVEAVLPSMEKFGYAIRSV------ 439

Query: 108 GSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG 167
                    ++ +++G +  A++ G  +AL D                 +K  VA ++ G
Sbjct: 440 --------SEITESNGSSSMASVCGTSLALMDA-------------GVPVKAAVAGVAMG 478

Query: 168 MLC---GYPIV-DLDYGEDSTIDVDANFVMTDSG 197
           ++    GY ++ D+   ED   D+D     T  G
Sbjct: 479 LILEQDGYAVLTDILGDEDHLGDMDFKVAGTREG 512


>gi|328944853|gb|EGG39013.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK1087]
          Length = 733

 Score = 38.1 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 99/231 (42%), Gaps = 35/231 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70
           T +V+K A GS +V++G++ +LT AT+ +K+      P+ +   +  +   +Y       
Sbjct: 19  TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR    +    R+I R +R +         Q+I        D   + AA+
Sbjct: 73  GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
            G+ +AL               +S +   G +A +  G + G  I++    +     ++ 
Sbjct: 130 FGSSLAL--------------SISDIPFNGPIAGVQIGYVDGEFIINPSKEQKEVSLLEL 175

Query: 190 NFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
               T D+ ++VE  G+ E    S+D     L    + + +LI  Q+++++
Sbjct: 176 TVAGTKDAINMVE-SGAKE---LSEDVMLEALLKGHEAVKELIAFQEEIVA 222


>gi|254994938|ref|ZP_05277128.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale
           str. Mississippi]
 gi|255004198|ref|ZP_05278999.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale
           str. Virginia]
          Length = 805

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 25/174 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  +Q+R I +   +   + GS L   GDT  L    L    +E+V       +  
Sbjct: 320 RVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVITALGTPQDEQVVDGFDGDRRE 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIID 115
                Y     + G     EA + R  GR +EI   ++  RA+  V+   A     I + 
Sbjct: 380 RFLLHYNFPSYAVG-----EAAALRPPGR-REIGHGKLAWRAIHPVLPTKADFPYTIRVV 433

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            ++ ++DG +  A + GA +AL D                 LK  VA I+ G++
Sbjct: 434 SEITESDGSSSMATVCGASLALMDT-------------GVPLKSSVAGIAMGLI 474


>gi|170719911|ref|YP_001747599.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida
           W619]
 gi|226702679|sp|B1J2B3|PNP_PSEPW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169757914|gb|ACA71230.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida W619]
          Length = 701

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++++++  + +    I +
Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M+       +  V +G   A+   +L
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDIL 483


>gi|167035698|ref|YP_001670929.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida
           GB-1]
 gi|189037313|sp|B0KHX3|PNP_PSEPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|166862186|gb|ABZ00594.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida GB-1]
          Length = 701

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++++++  + +    I +
Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M+       +  V +G   A+   +L
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDIL 483


>gi|312963078|ref|ZP_07777563.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens
           WH6]
 gi|311282589|gb|EFQ61185.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens
           WH6]
          Length = 701

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++++++  + +    I +
Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M+       +  V +G   AI   +L
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 483


>gi|156400116|ref|XP_001638846.1| predicted protein [Nematostella vectensis]
 gi|156225970|gb|EDO46783.1| predicted protein [Nematostella vectensis]
          Length = 710

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 81/204 (39%), Gaps = 35/204 (17%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--------EEKVPMWIRN 53
           R  GRQ +++R I     + K   GS L K G+T + +TAT          + +   +  
Sbjct: 305 RCDGRQFDELRSIDCDINLYKTLHGSSLFKRGETQVFSTATFGSVGSAAKVDTISEAVGG 364

Query: 54  TKHGWITAEYGMLPRSTGNRVK--REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           +K       Y   P ST N VK  R +   R+ G     +R +   L   +  +      
Sbjct: 365 SKEKQFMLHYEFPPFST-NEVKQRRGSFDRREIGHGALAERALVPVLPDELPFT------ 417

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
           + +  +V+ ++G +  A+     +A+ D                 +K HVA  +CG+   
Sbjct: 418 LRLTAEVLGSNGSSSLASACAGSLAMMDA-------------GVPIKSHVAGSACGL--- 461

Query: 172 YPIVDLDYGEDSTIDVDANFVMTD 195
             +   D  + S  D+D   ++TD
Sbjct: 462 --VTSSDAEDASKRDIDNYQLLTD 483


>gi|150009352|ref|YP_001304095.1| polynucleotide phosphorylase/polyadenylase [Parabacteroides
           distasonis ATCC 8503]
 gi|255016204|ref|ZP_05288330.1| polynucleotide phosphorylase/polyadenylase [Bacteroides sp. 2_1_7]
 gi|256842357|ref|ZP_05547860.1| polyribonucleotide nucleotidyltransferase [Parabacteroides sp. D13]
 gi|187610323|sp|A6LFK9|PNP_PARD8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|149937776|gb|ABR44473.1| polyribonucleotide nucleotidyltransferase [Parabacteroides
           distasonis ATCC 8503]
 gi|256735964|gb|EEU49295.1| polyribonucleotide nucleotidyltransferase [Parabacteroides sp. D13]
          Length = 746

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 10/143 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           RL GR+  ++R I +         GS +   G+T  L+T TL    +EK+   + N  + 
Sbjct: 319 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKMIDDVLNHGYE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG       V  R+ G       +  RAL+ ++  +     ++I   D
Sbjct: 379 RFLLHYNFPPFSTGEAKATRGVGRREIGHGN----LAHRALKRMIPDNYPYVVRVI--SD 432

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           +++++G +  A +    +AL D 
Sbjct: 433 ILESNGSSSMATVCAGTLALRDA 455


>gi|254458763|ref|ZP_05072187.1| 3' exoribonuclease family, domain 2, protein [Campylobacterales
           bacterium GD 1]
 gi|207084529|gb|EDZ61817.1| 3' exoribonuclease family, domain 2, protein [Campylobacterales
           bacterium GD 1]
          Length = 727

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 9/141 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGW 58
           +R  GR   ++R IS++  V   A  SCL   G+T  L   T+   +   M+   T  G 
Sbjct: 346 VRADGRALTEVRPISISTNVLPKAHSSCLFTRGETQALVVLTMGGPKDAQMFESLTDAGT 405

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116
               + +     G  V     S   G + +E+    +  RAL  +VDL     R +    
Sbjct: 406 QNENFMVHYNFPGFSVGE--ASPIMGTKRRELGHGNLAKRALEPIVDLDGQTVRLV---S 460

Query: 117 DVIQADGGTRTAAITGAWVAL 137
           ++++++G +  A + G ++AL
Sbjct: 461 EILESNGSSSMATVCGGYMAL 481


>gi|118579404|ref|YP_900654.1| polynucleotide phosphorylase/polyadenylase [Pelobacter propionicus
           DSM 2379]
 gi|187610304|sp|A1AMM6|PNP_PELPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|118502114|gb|ABK98596.1| Polyribonucleotide nucleotidyltransferase [Pelobacter propionicus
           DSM 2379]
          Length = 706

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 16/129 (12%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-------PMWIRNTKHGWITAEYGMLPRS 69
           T +++K A G+ +VK GDT +L TA  +++        P+ +  T+  +     G +P  
Sbjct: 18  TGKMAKQANGAVVVKSGDTMVLVTAVAQKEAKEGQDFFPLTVNYTEKAYAG---GKIP-- 72

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G+  +REA   R         R+I R +R +   + L   QII        D   R  +
Sbjct: 73  -GSFFRREA---RPSDPETLTCRLIDRPIRPLFPENFLNDTQIIATVVSADKDHDPRILS 128

Query: 130 ITGAWVALH 138
           + GA  AL 
Sbjct: 129 MLGASAALE 137


>gi|325276169|ref|ZP_08141974.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. TJI-51]
 gi|324098706|gb|EGB96747.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. TJI-51]
          Length = 701

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 27/175 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++++++  + +    I +
Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M             K  VA I+ G++
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLV 470


>gi|148549775|ref|YP_001269877.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida F1]
 gi|187611272|sp|A5W983|PNP_PSEP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148513833|gb|ABQ80693.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida F1]
 gi|313500616|gb|ADR61982.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida
           BIRD-1]
          Length = 701

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 27/175 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++++++  + +    I +
Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M             K  VA I+ G++
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLV 470


>gi|71665831|ref|XP_819881.1| ribosomal RNA processing protein 41A [Trypanosoma cruzi strain CL
           Brener]
 gi|70885202|gb|EAN98030.1| ribosomal RNA processing protein 41A, putative [Trypanosoma cruzi]
          Length = 252

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 13/151 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN---TKHG 57
           +RL GR+  + R ++L        +G C V  G    L T       P  + N   +K+ 
Sbjct: 13  LRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSG----LATVCASVYGPREVTNRLESKYN 68

Query: 58  --WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
              IT E  +   +   R   +    R+   S+E+   +    RSVV LS   + QI I 
Sbjct: 69  ECIITCEVAIAAFAGEKRRAPQ----RRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHIC 124

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMED 146
            +V++ DG  + A I  A +AL D    M D
Sbjct: 125 VEVLRQDGSDKAACINAACLALVDACVAMRD 155


>gi|298377863|ref|ZP_06987813.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_19]
 gi|301312258|ref|ZP_07218175.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 20_3]
 gi|298265309|gb|EFI06972.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_19]
 gi|300829680|gb|EFK60333.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 20_3]
          Length = 746

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 10/143 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           RL GR+  ++R I +         GS +   G+T  L+T TL    +EK+   + N  + 
Sbjct: 319 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKMIDDVLNHGYE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG       V  R+ G       +  RAL+ ++  +     ++I   D
Sbjct: 379 RFLLHYNFPPFSTGEAKATRGVGRREIGHGN----LAHRALKRMIPDNYPYVVRVI--SD 432

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           +++++G +  A +    +AL D 
Sbjct: 433 ILESNGSSSMATVCAGTLALRDA 455


>gi|226951862|ref|ZP_03822326.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ATCC
           27244]
 gi|294649119|ref|ZP_06726561.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226837402|gb|EEH69785.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ATCC
           27244]
 gi|292825002|gb|EFF83763.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 714

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 23/173 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I +   V   A GS L   G+T  L T TL       + +T  G  T 
Sbjct: 334 RIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 393

Query: 62  EYGM---LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116
            + +    P  +     RE+     G + +EI   R+  R +++V+  +      I I  
Sbjct: 394 NFMLHYNFPAYSVGETGRES-----GPKRREIGHGRLARRGVQAVLPAADRFPYVIRIVS 448

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           D+ +++G +  A++ GA ++L D                 LK  VA I+ G++
Sbjct: 449 DITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLV 488


>gi|327310388|ref|YP_004337285.1| exosome complex RNA-binding protein Rrp42 [Thermoproteus uzoniensis
           768-20]
 gi|326946867|gb|AEA11973.1| exosome complex RNA-binding protein Rrp42 [Thermoproteus uzoniensis
           768-20]
          Length = 273

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 28/205 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR  +Q+RE+S+T  V   A+GS     G T ++    +    P +      G + 
Sbjct: 28  VRIDGRTPDQLREVSITTNVVNTADGSAEALLGKTRVVAGVKVGLGQP-FPDAPDEGVLI 86

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ-----II 113
               +LP ++       +  G     + E+ R++ R +R    VD   L   Q     + 
Sbjct: 87  VNAEILPHASP-----YSEIGPPDETAIELARVVDRGIRHSGFVDFKKLAIDQNKVYVLW 141

Query: 114 IDCDVIQADGG------------TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV 161
           +D  V+  DG              R+  +     A+ D      D +NK  L   L    
Sbjct: 142 VDLYVLNDDGNLVDAANLAALAALRSTMLPS---AVKDETGVKLDRNNKTALPSDLSKAP 198

Query: 162 AAISCGMLCGYPIVDLDYGEDSTID 186
            A+S G +    IVD ++ E+ ++D
Sbjct: 199 IAVSIGKIDNRLIVDPNFEEELSLD 223


>gi|220903340|ref|YP_002478652.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|257096688|sp|B8J1X9|PNP_DESDA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219867639|gb|ACL47974.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 743

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 9/143 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I +   +   A GS L + G+T  L  ATL         ++  G +T 
Sbjct: 324 RIDGRDTTTVRPIQIQTGLLPRAHGSALFRRGETKSLVVATLGSSTDEQRMDSLTGDVTK 383

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  VK   VS R+ G       +  ++LR V+   A     + +  +
Sbjct: 384 RFMLHYNFPPFSVGE-VKPVRVSRREIGHGA----LAEKSLRPVLPADADFPFTLRVVAE 438

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
            ++++G +  AA+ G  ++L D 
Sbjct: 439 TMESNGSSSMAAVCGGSLSLMDA 461


>gi|327291858|ref|XP_003230637.1| PREDICTED: exosome complex exonuclease RRP41-like, partial [Anolis
           carolinensis]
          Length = 188

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 17/126 (13%)

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  ++ +   STG R KR     RQ   + E+   + +   + +        QI I   +
Sbjct: 15  VNCQFSLATFSTGER-KRRPHGDRQ---TSEMSLHLKQTFEAAILTQLYPRSQIDIYVQI 70

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QADGG   A++  A +A+ D                 L+ +V A S G +   P+ DL+
Sbjct: 71  LQADGGNYCASVNAATLAVIDA-------------GIPLRDYVCASSAGFIEDTPLADLN 117

Query: 179 YGEDST 184
           Y E+++
Sbjct: 118 YVEEAS 123


>gi|262384733|ref|ZP_06077866.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_33B]
 gi|262293714|gb|EEY81649.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_33B]
          Length = 746

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 10/143 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           RL GR+  ++R I +         GS +   G+T  L+T TL    +EK+   + N  + 
Sbjct: 319 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKMIDDVLNHGYE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG       V  R+ G       +  RAL+ ++  +     ++I   D
Sbjct: 379 RFLLHYNFPPFSTGEAKATRGVGRREIGHGN----LAHRALKRMIPDNYPYVVRVI--SD 432

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           +++++G +  A +    +AL D 
Sbjct: 433 ILESNGSSSMATVCAGTLALRDA 455


>gi|28193987|gb|AAO33354.1|AF465249_1 polynucleotide phosphorylase [Mus musculus]
          Length = 748

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 38/200 (19%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++++A+G  +++ GDT ++ TA  + K      +P+ +   +     A  G +P    N
Sbjct: 28  KLARFADGCAVIQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AAAGRIPT---N 81

Query: 73  RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128
            ++RE      G   +E+   R+I R++R +         Q++  C+++  DG       
Sbjct: 82  YLRREI-----GSSDREVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEPDIL 134

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           A+ GA VAL               LS +   G V A+  GM+ G  +V+    E S+  +
Sbjct: 135 AVNGASVAL--------------SLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTL 180

Query: 188 DANFVMTDSGHIVEVQGSAE 207
           +          IV ++ SAE
Sbjct: 181 NLVVAGAPKSQIVMLEASAE 200


>gi|85710513|ref|ZP_01041577.1| polyribonucleotide nucleotidyltransferase [Erythrobacter sp. NAP1]
 gi|85687691|gb|EAQ27696.1| polyribonucleotide nucleotidyltransferase [Erythrobacter sp. NAP1]
          Length = 762

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 71/172 (41%), Gaps = 8/172 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR+ +Q+R I     +     GS L   G+T  + T TL     E++   +    + 
Sbjct: 320 RIDGRKLDQVRPIEAMVGLLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGLEGLSYS 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +    S R+ G      ++  RALR V+  +      I +  D
Sbjct: 380 NFMLHYNFPPYSVGEVGRFGFTSRRETGHG----KLAFRALRPVLPDAEEFPYTIRVLSD 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A + G  +++ D    +    +   +  +L+G   A+   +L
Sbjct: 436 ITESNGSSSMATVCGGALSMMDAGVPLARPVSGIAMGLILEGEDFAVLSDIL 487


>gi|224089018|ref|XP_002308603.1| predicted protein [Populus trichocarpa]
 gi|222854579|gb|EEE92126.1| predicted protein [Populus trichocarpa]
          Length = 243

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 82/216 (37%), Gaps = 29/216 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R +S +  V   A GS     GDT          KV   +   K G    
Sbjct: 5   RDDGRSPSQLRPLSCSHNVLHRAHGSASWSQGDT----------KVSAAVYGPKAGTKKN 54

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           E    P      V  +  +G+ G   +E + ++ R L+S+  L+   +    I    +  
Sbjct: 55  EN---PEKACVEVIWKPKTGQIGKLEREYEMILKRTLQSICILTLNPNTTTSIIVQFVND 111

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC--GYPIVDLDY 179
           DG     AI  A  AL D              +++   H+A   C  L   GY I+D   
Sbjct: 112 DGALLVCAINAACAALVD--------------ARIPMKHLAVAICCCLADVGYVILDPTK 157

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
            E+  +   A  V  +S   V ++GS+     S +H
Sbjct: 158 LEEQKMKGFAYLVFPNSVLSVLLEGSSLVEGESTEH 193


>gi|221128137|ref|XP_002160444.1| PREDICTED: similar to 3 exoribonuclease [Hydra magnipapillata]
          Length = 437

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 20/148 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GRQ    R IS+   +     G C V+ G+T +L   + E   P+  R T+ G + 
Sbjct: 24  IRLDGRQAFDYRNISIQFGIDY---GCCEVQLGETRVLAQTSCELVKPIGTRPTE-GQLH 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
               + P ++ +       +GR   +  EI R+I R ++         SR   ID + + 
Sbjct: 80  LNVDLSPMASPS-----FETGRMTSQGLEINRLIERCIKE--------SR--CIDVESLC 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCS 148
              G +  +I    V L+DC  ++ DCS
Sbjct: 125 LIAGEKVWSIRVDIVVLNDC-GNILDCS 151


>gi|237750416|ref|ZP_04580896.1| polyribonucleotide nucleotidyltransferase [Helicobacter bilis ATCC
           43879]
 gi|229373946|gb|EEO24337.1| polyribonucleotide nucleotidyltransferase [Helicobacter bilis ATCC
           43879]
          Length = 734

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 11/140 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R  GR   ++REIS+   +     GS     G T  L T TL    + +    I      
Sbjct: 353 RADGRALREIREISIESNLLPKTHGSACFTRGQTQALVTCTLGSQNDAQTQEGILTQGKS 412

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            I   Y   P S G      A S R+ G           AL+++    A     I +  +
Sbjct: 413 KIIFHYNFPPFSVGEAYPIGASSRRELGHG-------NLALKAIESNVANTPHTIRLVSE 465

Query: 118 VIQADGGTRTAAITGAWVAL 137
           ++Q++G +  A++ GA +AL
Sbjct: 466 ILQSNGSSSMASVCGASLAL 485


>gi|154490390|ref|ZP_02030651.1| hypothetical protein PARMER_00623 [Parabacteroides merdae ATCC
           43184]
 gi|154089001|gb|EDN88045.1| hypothetical protein PARMER_00623 [Parabacteroides merdae ATCC
           43184]
          Length = 743

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 10/143 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           RL GR+  ++R I +         GS +   G+T  L+T TL    +EK+   + N    
Sbjct: 319 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKADEKMIDDVLNHGKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG       V  R+ G       +  RAL+ ++        ++I   D
Sbjct: 379 RFLLHYNFPPFSTGEAKASRGVGRREIGHGN----LAHRALKRMIPTDYPYVVRVI--SD 432

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           +++++G +  A +    +AL D 
Sbjct: 433 ILESNGSSSMATVCAGTLALRDA 455


>gi|241763284|ref|ZP_04761341.1| Polyribonucleotide nucleotidyltransferase [Acidovorax delafieldii
           2AN]
 gi|241367559|gb|EER61846.1| Polyribonucleotide nucleotidyltransferase [Acidovorax delafieldii
           2AN]
          Length = 747

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 69/172 (40%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGW-- 58
           R+ GR    +R I +   V   A GS L   G+T  L   TL  E+    I      +  
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSSLFTRGETQALVVTTLGTERDAQRIDALAGEYED 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL +V+         + +  +
Sbjct: 377 RFMLHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALAAVLPTKEEFPYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A++ G  ++L D    M             K HVA I+ G++
Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLI 471


>gi|258648734|ref|ZP_05736203.1| polyribonucleotide nucleotidyltransferase [Prevotella tannerae ATCC
           51259]
 gi|260851047|gb|EEX70916.1| polyribonucleotide nucleotidyltransferase [Prevotella tannerae ATCC
           51259]
          Length = 768

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 10/143 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           RL GRQ  ++R I           GS +   G+T  L T T    L+EK+   + +  + 
Sbjct: 325 RLDGRQTTEIRPIWCEAGPLPMPHGSAIFTRGETQALATTTLGTRLDEKMIDDVLDKSYQ 384

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL++ +      + +I+   D
Sbjct: 385 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKNQIPADFPYTVRIV--SD 438

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           +++++G +  A +    ++L D 
Sbjct: 439 ILESNGSSSMATVCAGTLSLLDA 461


>gi|254479099|ref|ZP_05092451.1| polyribonucleotide nucleotidyltransferase, RNA binding domain
           family [Carboxydibrachium pacificum DSM 12653]
 gi|214034948|gb|EEB75670.1| polyribonucleotide nucleotidyltransferase, RNA binding domain
           family [Carboxydibrachium pacificum DSM 12653]
          Length = 328

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 29/148 (19%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           M L+GR     + +  T +V++ A G+  VK+GDT +L TA          +  + G   
Sbjct: 8   MELAGR-----KLVVQTGKVAQQANGAAWVKYGDTVVLVTACAS-------KEPREGIDF 55

Query: 58  -WITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS 109
             +T EY       G +P   G  +KRE   G+   ++    R+I R +R +        
Sbjct: 56  FPLTVEYEERLYSIGKIP---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPEGYRND 109

Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVAL 137
            Q+I     +  D      A+ G+ VAL
Sbjct: 110 VQVIATVLSVDPDAQPEIVAMIGSSVAL 137


>gi|187923336|ref|YP_001894978.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           phytofirmans PsJN]
 gi|226702630|sp|B2T2E3|PNP_BURPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187714530|gb|ACD15754.1| Polyribonucleotide nucleotidyltransferase [Burkholderia
           phytofirmans PsJN]
          Length = 718

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  +  ATL    +E+    +      
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAMVVATLGTKGDEQNIDALEGEYRE 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL + +  +      I +
Sbjct: 382 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALAACLPSADEFGYSIRV 434

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +AL D    M             K HVA I+ G++ 
Sbjct: 435 VSEITESNGSSSMASVCGGCLALMDAGVPM-------------KAHVAGIAMGLIL 477


>gi|58617084|ref|YP_196283.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia ruminantium
           str. Gardel]
 gi|75357076|sp|Q5FHK5|PNP_EHRRG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|58416696|emb|CAI27809.1| Polyribonucleotide nucleotidyltransferase [Ehrlichia ruminantium
           str. Gardel]
          Length = 789

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  N +R+I +   V     GS L   G+T  L    L    +E++   +   +  
Sbjct: 323 RIDGRAFNGIRDIEIEIDVLPKTHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 382

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P + G      A   R+ G      ++  +A+R V+   +     I +  +
Sbjct: 383 NFLLHYNFPPYAVGESAALRAPGRREIGHG----KLAWKAIRYVLPEKSDFPYTIRVVSE 438

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + ++DG +  A + GA +AL D                 +K  VA I+ G++
Sbjct: 439 ITESDGSSSMATVCGASLALMDT-------------GVPIKAPVAGIAMGLI 477


>gi|313204132|ref|YP_004042789.1| polyribonucleotide nucleotidyltransferase [Paludibacter
           propionicigenes WB4]
 gi|312443448|gb|ADQ79804.1| polyribonucleotide nucleotidyltransferase [Paludibacter
           propionicigenes WB4]
          Length = 713

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 11/95 (11%)

Query: 12  REISL-TRRVSKYAEGSCLVKFGDTHLLTTA-TLEEKVP---MWIRNTKHGWITAEYGML 66
           R IS+ T +++K A+GS +V+ GDT LL T  + ++ VP       +  +    A +G  
Sbjct: 14  RTISIETGKLAKQADGSVMVRMGDTMLLATVCSAQDAVPGTDFMPLSVDYKEKYAAFGRF 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV 101
           P   G  +KRE   GR       + R++ RALR +
Sbjct: 74  P---GGFLKRE---GRASDYEILVSRLVDRALRPL 102


>gi|94497007|ref|ZP_01303581.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas sp. SKA58]
 gi|94423683|gb|EAT08710.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas sp. SKA58]
          Length = 778

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 90/228 (39%), Gaps = 18/228 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR   Q+R I           GS L   G+T  + T TL     E++   +    + 
Sbjct: 323 RIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGLTGLHYE 382

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  V R    GR   R     ++  RAL  V+         I +  D
Sbjct: 383 NFMLHYNFPPYSVGE-VGRFGAPGR---REVGHGKLAWRALHPVLPSKDEFPYTIRVLSD 438

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +++ D    ++   +   +  +L+G   A+         I D+
Sbjct: 439 ITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKDYAV---------ISDI 489

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
              ED   D+D     T++G I  +Q   + A  +Q+ F   L  AK+
Sbjct: 490 LGDEDHLGDMDFKVAGTENG-ITTMQMDIKVAGITQEIFEVALRQAKE 536


>gi|57239082|ref|YP_180218.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58579025|ref|YP_197237.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia ruminantium
           str. Welgevonden]
 gi|81352951|sp|Q5HBH6|PNP_EHRRW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|57161161|emb|CAH58074.1| polyribonucleotide nucleotidyltransferase [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58417651|emb|CAI26855.1| Polyribonucleotide nucleotidyltransferase [Ehrlichia ruminantium
           str. Welgevonden]
          Length = 789

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  N +R+I +   V     GS L   G+T  L    L    +E++   +   +  
Sbjct: 323 RIDGRAFNGIRDIEIEIDVLPKTHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 382

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P + G      A   R+ G      ++  +A+R V+   +     I +  +
Sbjct: 383 NFLLHYNFPPYAVGESAALRAPGRREIGHG----KLAWKAIRYVLPEKSDFPYTIRVVSE 438

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + ++DG +  A + GA +AL D                 +K  VA I+ G++
Sbjct: 439 ITESDGSSSMATVCGASLALMDT-------------GVPIKAPVAGIAMGLI 477


>gi|153951894|ref|YP_001397657.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|187610250|sp|A7H2C7|PNP_CAMJD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|152939340|gb|ABS44081.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 718

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 4/138 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWI 59
           R  GR  N++R IS+   +   A GSCL   G T  L  ATL  E    M    T+   I
Sbjct: 335 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 394

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           +  + +     G  V   +     G R      +  RAL   VD +     +++   +++
Sbjct: 395 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLV--SEIL 452

Query: 120 QADGGTRTAAITGAWVAL 137
           +++G +  A + G  +AL
Sbjct: 453 ESNGSSSMATVCGGSLAL 470


>gi|222475095|ref|YP_002563511.1| polyribonucleotide nucleotidyltransferase [Anaplasma marginale str.
           Florida]
 gi|257096679|sp|B9KIE3|PNP_ANAMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|222419232|gb|ACM49255.1| polyribonucleotide nucleotidyltransferase [Anaplasma marginale str.
           Florida]
          Length = 805

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 25/174 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  +Q+R I +   +   + GS L   GDT  L    L    +E+V       +  
Sbjct: 320 RVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVITALGTPQDEQVVDGFDGDRRE 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIID 115
                Y     + G     EA + R  GR +EI   ++  RA+  V+   A     I + 
Sbjct: 380 RFLLHYNFPSYAVG-----EAAALRPPGR-REIGHGKLAWRAIHPVLPTKADFPYTIRVV 433

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            ++ ++DG +  A + GA +AL D                 LK  VA I+ G++
Sbjct: 434 SEITESDGSSSMATVCGASLALMDT-------------GVPLKSSVAGIAMGLI 474


>gi|313638085|gb|EFS03354.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri FSL
           S4-171]
          Length = 723

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 15/125 (12%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++K A G+ L+++GDT +LT A   +K       P+ +   +  +     G +P   G 
Sbjct: 22  QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR   R+    R+I R +R +         QI      +  D     AA+ G
Sbjct: 76  FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132

Query: 133 AWVAL 137
           + VAL
Sbjct: 133 SSVAL 137


>gi|260223146|emb|CBA33418.1| Polyribonucleotide nucleotidyltransferase [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 722

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 27/175 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGW-- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  E+    I      +  
Sbjct: 338 RIDGRDTRTVRAIEIRNGVLPRTHGSSLFTRGETQALVIATLGTERDAQRIDALSGEYED 397

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL +V+         + +
Sbjct: 398 RFMLHYNMPPFATGE-------TGRVGTPKRREIGHGRLAKRALVAVLPTKEEFPYSLRV 450

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ G  ++L D                 LK HVA I+ G++
Sbjct: 451 VSEITESNGSSSMASVCGGCLSLMDA-------------GVPLKAHVAGIAMGLI 492


>gi|197117696|ref|YP_002138123.1| polynucleotide phosphorylase/polyadenylase [Geobacter bemidjiensis
           Bem]
 gi|257096691|sp|B5EI63|PNP_GEOBB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|197087056|gb|ACH38327.1| polyribonucleotide nucleotidyltransferase [Geobacter bemidjiensis
           Bem]
          Length = 696

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 38/221 (17%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R IS    +   A GS L   G+T  +  ATL     E+++     +++ 
Sbjct: 312 RIDGRDTKTIRAISTEVSLLPRAHGSALFTRGETQSIVAATLGTSVDEQRIDSLYGDSRK 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++   Y   P S G    R A   R+ G     +R + + L    D        I I  
Sbjct: 372 KFML-HYNFPPYSVGETSFRLAPGRREIGHGMLAERALQQVLPKHDDF----PYTIRIVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           D+ +++G +  A + G  +++ D                 +K  VA I+ G+        
Sbjct: 427 DITESNGSSSMATVCGGSLSMMDA-------------GIPIKAPVAGIAMGL-------- 465

Query: 177 LDYGEDSTIDVDANFVMTDSGHI----VEVQGSAERATFSQ 213
           +  G+D  I  D   ++ D  H+     +V G+AE  T  Q
Sbjct: 466 IKEGDDFAILSD---ILGDEDHLGDMDFKVAGTAEGVTALQ 503


>gi|56416731|ref|YP_153805.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale
           str. St. Maries]
 gi|81359135|sp|Q5PAY0|PNP_ANAMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56387963|gb|AAV86550.1| polyribonucleotide nucleotidyltransferase [Anaplasma marginale str.
           St. Maries]
          Length = 805

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 25/174 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  +Q+R I +   +   + GS L   GDT  L    L    +E+V       +  
Sbjct: 320 RVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVITALGTPQDEQVVDGFDGDRRE 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIID 115
                Y     + G     EA + R  GR +EI   ++  RA+  V+   A     I + 
Sbjct: 380 RFLLHYNFPSYAVG-----EAAALRPPGR-REIGHGKLAWRAIHPVLPTKADFPYTIRVV 433

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            ++ ++DG +  A + GA +AL D                 LK  VA I+ G++
Sbjct: 434 SEITESDGSSSMATVCGASLALMDT-------------GVPLKSSVAGIAMGLI 474


>gi|74225136|dbj|BAE38260.1| unnamed protein product [Mus musculus]
          Length = 783

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 38/200 (19%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++++A+G  +++ GDT ++ TA  + K      +P+ +   +     A  G +P    N
Sbjct: 62  KLARFADGCAVIQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AAAGRIPT---N 115

Query: 73  RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128
            ++RE      G   +E+   R+I R++R +         Q++  C+++  DG       
Sbjct: 116 YLRREI-----GSSDREVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEPDIL 168

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           A+ GA VAL               LS +   G V A+  GM+ G  +V+    E S+  +
Sbjct: 169 AVNGASVAL--------------SLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTL 214

Query: 188 DANFVMTDSGHIVEVQGSAE 207
           +          IV ++ SAE
Sbjct: 215 NLVVAGAPKSQIVMLEASAE 234


>gi|170747372|ref|YP_001753632.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           radiotolerans JCM 2831]
 gi|226702663|sp|B1LZQ1|PNP_METRJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|170653894|gb|ACB22949.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 739

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 91/234 (38%), Gaps = 30/234 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I     V   A GS L   G+T  L  ATL    +E+    +  T   
Sbjct: 316 RIDGRDVKTVRSILSEVGVLPRAHGSALFTRGETQALVVATLGTGEDEQFIDALEGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111
                Y   P S G        +GR G      +R IG      RA+R V+  +      
Sbjct: 376 RFLLHYNFPPYSVGE-------TGRMGSPG---RREIGHGKLAWRAIRPVLPPAHEFPYT 425

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
           I +  ++ +++G +  A++ G  ++L D    +        +  +L+G   A+       
Sbjct: 426 IRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAV------- 478

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
             + D+   ED   D+D     TD G +  +Q   + A  +++     L  AKD
Sbjct: 479 --LSDILGDEDHLGDMDFKVAGTDEG-VTSLQMDIKIAGITEEIMKIALAQAKD 529


>gi|313633394|gb|EFS00232.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri FSL
           N1-067]
          Length = 723

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 15/125 (12%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++K A G+ L+++GDT +LT A   +K       P+ +   +  +     G +P   G 
Sbjct: 22  QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR   R+    R+I R +R +         QI      +  D     AA+ G
Sbjct: 76  FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132

Query: 133 AWVAL 137
           + VAL
Sbjct: 133 SSVAL 137


>gi|254496145|ref|ZP_05109043.1| polynucleotide phosphorylase/polyadenylase [Legionella drancourtii
           LLAP12]
 gi|254354632|gb|EET13269.1| polynucleotide phosphorylase/polyadenylase [Legionella drancourtii
           LLAP12]
          Length = 719

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMW--IRNTKHG 57
           R+ GR    +R I++  ++ +   GSCL   G+T  +  ATL  E    M   I      
Sbjct: 314 RIDGRDHKTVRPIAVRTKLLERTHGSCLFTRGETQAIVVATLGNERDAQMLDGINVESKD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  RAL +V+  ++     + +  +
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRALLAVLPEASAFPYVLRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A + G  +AL D                 LK  VA ++ G++
Sbjct: 430 ITESNGSSSMATVCGTSLALMDA-------------GVPLKAPVAGVAMGLI 468


>gi|289449845|ref|YP_003475189.1| polyribonucleotide nucleotidyltransferase [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184392|gb|ADC90817.1| polyribonucleotide nucleotidyltransferase [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 745

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLPRSTGN 72
           T +++++A GSCL+++G+T +L+TAT  ++    +  +  +  +       G +PR    
Sbjct: 18  TGKLAQFANGSCLIRYGNTVVLSTATASKQPRPGIDFFPLSVDYEEKMYAIGKIPRGF-- 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSV 101
            +KRE   GR   ++    R+I R +R +
Sbjct: 76  -IKRE---GRPSEKAILTSRVIDRPMRPL 100



 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 69/179 (38%), Gaps = 33/179 (18%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  +++R +S    +     GS L + G T +LT  TL      +    + N K  
Sbjct: 312 RVDGRGIDEIRPLSCDAGILPMVHGSGLFQRGQTQVLTICTLGPLSSAQTLDGLDNEKEK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111
                Y M   STG     EA   R  GR     R IG      R+L  V+         
Sbjct: 372 RYMHHYNMPGYSTG-----EAKPNRSPGR-----REIGHGALAERSLVPVLPSEEEFPYA 421

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           I    +++ ++G T   ++  + +AL D                 +K  VA ISCG+L 
Sbjct: 422 IRTVSEIMMSNGSTSQGSVCASTLALMDA-------------GVPIKRPVAGISCGLLV 467


>gi|163745458|ref|ZP_02152818.1| polyribonucleotide nucleotidyltransferase [Oceanibulbus indolifex
           HEL-45]
 gi|161382276|gb|EDQ06685.1| polyribonucleotide nucleotidyltransferase [Oceanibulbus indolifex
           HEL-45]
          Length = 711

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 104/245 (42%), Gaps = 30/245 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR+ +++R+I     +     GS L   G+T  L   TL     E+ +     N K 
Sbjct: 318 RIDGRRTDEIRDIVAETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++   Y   P S G  V R    GR   R     ++  RAL++V+  +      I +  
Sbjct: 378 NFLL-HYNFPPYSVG-EVGRVGPPGR---REVGHGKLAWRALQAVLPAATDFPYTIRLVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GY 172
           ++ +++G +  A++ G  +++ D                 LK  VA ++ G++      Y
Sbjct: 433 EITESNGSSSMASVCGGSLSMMDA-------------GVPLKSAVAGVAMGLILEDDGSY 479

Query: 173 PIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD-RIADL 230
            I+ D+   ED   D+D     T++G I  +Q   + A  + +     L  AKD RI  L
Sbjct: 480 AILSDILGDEDHLGDMDFKVAGTEAG-ITSLQMDIKVAGITPEIMEKALAQAKDGRIHIL 538

Query: 231 IKLQK 235
            ++ K
Sbjct: 539 GEMNK 543


>gi|289434612|ref|YP_003464484.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289170856|emb|CBH27398.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 723

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 15/125 (12%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++K A G+ L+++GDT +LT A   +K       P+ +   +  +     G +P   G 
Sbjct: 22  QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR   R+    R+I R +R +         QI      +  D     AA+ G
Sbjct: 76  FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132

Query: 133 AWVAL 137
           + VAL
Sbjct: 133 SSVAL 137


>gi|25188204|ref|NP_082145.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial
           precursor [Mus musculus]
 gi|71159797|sp|Q8K1R3|PNPT1_MOUSE RecName: Full=Polyribonucleotide nucleotidyltransferase 1,
           mitochondrial; AltName: Full=3'-5' RNA exonuclease
           OLD35; AltName: Full=PNPase old-35; AltName:
           Full=Polynucleotide phosphorylase 1; Short=PNPase 1;
           AltName: Full=Polynucleotide phosphorylase-like protein;
           Flags: Precursor
 gi|22799101|emb|CAD45436.1| polynucleotide phosphorylase-like protein [Mus musculus]
 gi|33585810|gb|AAH55826.1| Polyribonucleotide nucleotidyltransferase 1 [Mus musculus]
 gi|56208052|emb|CAI25081.1| polyribonucleotide nucleotidyltransferase 1 [Mus musculus]
 gi|74143624|dbj|BAE28862.1| unnamed protein product [Mus musculus]
 gi|148691866|gb|EDL23813.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_a [Mus
           musculus]
          Length = 783

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 38/200 (19%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++++A+G  +++ GDT ++ TA  + K      +P+ +   +     A  G +P    N
Sbjct: 62  KLARFADGCAVIQSGDTAVMVTAVSKTKASPSQFMPLVVDYRQKA---AAAGRIPT---N 115

Query: 73  RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128
            ++RE      G   +E+   R+I R++R +         Q++  C+++  DG       
Sbjct: 116 YLRREI-----GSSDREVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEPDIL 168

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           A+ GA VAL               LS +   G V A+  GM+ G  +V+    E S+  +
Sbjct: 169 AVNGASVAL--------------SLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTL 214

Query: 188 DANFVMTDSGHIVEVQGSAE 207
           +          IV ++ SAE
Sbjct: 215 NLVVAGAPKSQIVMLEASAE 234


>gi|315302988|ref|ZP_07873706.1| polyribonucleotide nucleotidyltransferase [Listeria ivanovii FSL
           F6-596]
 gi|313628638|gb|EFR97053.1| polyribonucleotide nucleotidyltransferase [Listeria ivanovii FSL
           F6-596]
          Length = 723

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 15/125 (12%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++K A G+ L+++GDT +LT A   +K       P+ +   +  +     G +P   G 
Sbjct: 22  QLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMY---SVGKVP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR   R+    R+I R +R +         QI      +  D     AA+ G
Sbjct: 76  FLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAMLG 132

Query: 133 AWVAL 137
           + VAL
Sbjct: 133 SSVAL 137


>gi|229592632|ref|YP_002874751.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens
           SBW25]
 gi|259534147|sp|C3K255|PNP_PSEFS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|229364498|emb|CAY52345.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens
           SBW25]
          Length = 701

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 14/175 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++ +++  + +    I +
Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSISAMLPAADVFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M+       +  V +G   AI   +L
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGQKFAILTDIL 483


>gi|74183452|dbj|BAE36595.1| unnamed protein product [Mus musculus]
          Length = 783

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 38/200 (19%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++++A+G  +++ GDT ++ TA  + K      +P+ +   +     A  G +P    N
Sbjct: 62  KLARFADGCAVIQSGDTAVMVTAVSKTKASPSQFMPLVVDYRQKA---AAAGRIPT---N 115

Query: 73  RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128
            ++RE      G   +E+   R+I R++R +         Q++  C+++  DG       
Sbjct: 116 YLRREI-----GSSDREVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEPDIL 168

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           A+ GA VAL               LS +   G V A+  GM+ G  +V+    E S+  +
Sbjct: 169 AVNGASVAL--------------SLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTL 214

Query: 188 DANFVMTDSGHIVEVQGSAE 207
           +          IV ++ SAE
Sbjct: 215 NLVVAGAPKSQIVMLEASAE 234


>gi|52080276|ref|YP_079067.1| polynucleotide phosphorylase/polyadenylase [Bacillus licheniformis
           ATCC 14580]
 gi|52785653|ref|YP_091482.1| polynucleotide phosphorylase/polyadenylase [Bacillus licheniformis
           ATCC 14580]
 gi|319645944|ref|ZP_08000174.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. BT1B_CT2]
 gi|81385548|sp|Q65JH5|PNP_BACLD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|52003487|gb|AAU23429.1| polynucleotide phosphorylase (PNPase) [Bacillus licheniformis ATCC
           14580]
 gi|52348155|gb|AAU40789.1| PnpA [Bacillus licheniformis ATCC 14580]
 gi|317391694|gb|EFV72491.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. BT1B_CT2]
          Length = 705

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 15/127 (11%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRST 70
           T +++K A G+ +V++GDT +L+TAT  ++       P+ +   +  +     G +P   
Sbjct: 21  TGQLAKQANGAVMVRYGDTAVLSTATASKEPKTVDFFPLTVNYEERLYAV---GKIP--- 74

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  AA+
Sbjct: 75  GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEMAAM 131

Query: 131 TGAWVAL 137
            G+ +AL
Sbjct: 132 FGSSLAL 138


>gi|157415517|ref|YP_001482773.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|187610249|sp|A8FMV9|PNP_CAMJ8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157386481|gb|ABV52796.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|307748158|gb|ADN91428.1| Polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni M1]
          Length = 719

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 4/138 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWI 59
           R  GR  N++R IS+   +   A GSCL   G T  L  ATL  E    M    T+   I
Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           +  + +     G  V   +     G R      +  RAL   VD +     +++   +++
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLV--SEIL 453

Query: 120 QADGGTRTAAITGAWVAL 137
           +++G +  A + G  +AL
Sbjct: 454 ESNGSSSMATVCGGSLAL 471


>gi|157150941|ref|YP_001449663.1| polynucleotide phosphorylase/polyadenylase [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|187611296|sp|A8AV53|PNP_STRGC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157075735|gb|ABV10418.1| polyribonucleotide nucleotidyltransferase [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 728

 Score = 37.7 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 98/231 (42%), Gaps = 35/231 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70
           T +V+K A GS +V++G++ +LT AT+ +K+      P+ +   +  +   +Y       
Sbjct: 19  TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR    +    R+I R +R +         Q+I        D   + AA+
Sbjct: 73  GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
            G+ +AL               +S +   G +A +  G + G  I++    +     ++ 
Sbjct: 130 FGSSLAL--------------SISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLEL 175

Query: 190 NFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
               T D+ ++VE  G+ E    S+D     L      + +LI  Q+++++
Sbjct: 176 TVAGTKDAINMVE-SGAKE---LSEDVMLEALLKGHQAVKELIAFQEEIVA 222


>gi|70734341|ref|YP_257981.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens
           Pf-5]
 gi|123762225|sp|Q4KIF2|PNP_PSEF5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|68348640|gb|AAY96246.1| polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens
           Pf-5]
          Length = 703

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 318 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++++++  + +    I +
Sbjct: 378 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRV 430

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M+       +  V +G   A+   +L
Sbjct: 431 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDIL 485


>gi|304310511|ref|YP_003810109.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           HdN1]
 gi|301796244|emb|CBL44452.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           HdN1]
          Length = 701

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 25/174 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R IS+         GS L   G+T  + TATL    + +   ++   +  
Sbjct: 316 RIDGRDNKTVRPISIEVGNLARTHGSALFTRGETQAIVTATLGSMRDSQTVDYLEGARSE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIID 115
                Y   P   G         G+ G + +EI   R+  R +++V+  ++     I + 
Sbjct: 376 PFMLHYNFPPFCVGE------TGGQLGPKRREIGHGRLARRGIQAVLPENSAFPYAIRVV 429

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            ++ +++G +  A++ G+ +AL D                 LK  VA I+ G++
Sbjct: 430 SEITESNGSSSMASVCGSSLALMDA-------------GVPLKAPVAGIAMGLV 470


>gi|12835817|dbj|BAB23374.1| unnamed protein product [Mus musculus]
          Length = 540

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 38/200 (19%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++++A+G  +++ GDT ++ TA  + K      +P+ +   +     A  G +P    N
Sbjct: 62  KLARFADGCAVIQSGDTAVMVTAVSKTKASPSQFMPLVVDYRQKA---AAAGRIPT---N 115

Query: 73  RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128
            ++RE      G   +E+   R+I R++R +         Q++  C+++  DG       
Sbjct: 116 YLRREI-----GSSDREVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEPDIL 168

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           A+ GA VAL               LS +   G V A+  GM+ G  +V+    E S+  +
Sbjct: 169 AVNGASVAL--------------SLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTL 214

Query: 188 DANFVMTDSGHIVEVQGSAE 207
           +          IV ++ SAE
Sbjct: 215 NLVVAGAPKSQIVMLEASAE 234


>gi|317052392|ref|YP_004113508.1| polyribonucleotide nucleotidyltransferase [Desulfurispirillum
           indicum S5]
 gi|316947476|gb|ADU66952.1| polyribonucleotide nucleotidyltransferase [Desulfurispirillum
           indicum S5]
          Length = 722

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 73/174 (41%), Gaps = 12/174 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  N++R IS+         GS L   G+T  +   TL    +E+    +   +  
Sbjct: 316 RVDGRSLNEVRPISIAPSFLPRTHGSVLFTRGETQAIVVTTLGTVSDEQFVENLEGERRS 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQR--MIGRALRSVVDLSALGSRQIIID 115
                Y   P   G     EA   R  GR +EI    +  RA+ +V+         I I 
Sbjct: 376 NYMFHYNFPPYCVG-----EAGFLRSPGR-REIGHGALAKRAIEAVLPQGEDFPYTIRIV 429

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            ++ +++G +  A++ GA +AL D    ++   +   +  +L+G   A+   +L
Sbjct: 430 SEITESNGSSSMASVCGASLALMDAGVPIKGAVSGIAMGLILEGDRFAVLTDIL 483


>gi|255264847|ref|ZP_05344189.1| polyribonucleotide nucleotidyltransferase [Thalassiobium sp. R2A62]
 gi|255107182|gb|EET49856.1| polyribonucleotide nucleotidyltransferase [Thalassiobium sp. R2A62]
          Length = 711

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 106/248 (42%), Gaps = 28/248 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR+ +++R+I     +     GS L   G+T  L  ATL    +E++   ++     
Sbjct: 318 RIDGRKTDEVRDIVCETGLLPRTHGSALFTRGETQGLVVATLGTGDDEQMIDALQGMYRS 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  V R    GR   R     ++  RAL++V+  +      I +  +
Sbjct: 378 NFMLHYNFPPYSVG-EVGRFGPPGR---REIGHGKLAWRALQAVLPAATDFPYTIRLVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GYP 173
           + +++G +  A++ G  +++ D                 LK  VA ++ G++      Y 
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLVLEDDGDYA 480

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD-RIADLI 231
           I+ D+   ED   D+D     T++G I  +Q   + A  + D     L  AK+ R+  L 
Sbjct: 481 ILTDILGDEDHLGDMDFKVAGTEAG-ITSLQMDIKVAGITPDIMEKALAQAKEGRLHILG 539

Query: 232 KLQKDVIS 239
           ++ K + S
Sbjct: 540 EMNKSISS 547


>gi|332976716|gb|EGK13552.1| polyribonucleotide nucleotidyltransferase [Psychrobacter sp.
           1501(2011)]
          Length = 702

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 19/171 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  + +R + +   V  Y  GS L   G+T  L T TL     + + ++  G I  
Sbjct: 320 RIDGRDLDTVRALDIQVGVLPYTHGSALFTRGETQALVTTTLGNSRDVNLIDSLAGTIQD 379

Query: 62  EYGM---LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
            + +    P  +     RE V  R   R     R+  R +++++  S      I +  ++
Sbjct: 380 HFMLHYNFPHFSVGETGREGVPKR---REIGHGRLARRGVQAMLPDSDRFPYVIRVVSEI 436

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            +++G +  A++ GA +AL D    M             K  VA I+ G++
Sbjct: 437 TESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLV 474


>gi|325686903|gb|EGD28928.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK72]
          Length = 733

 Score = 37.7 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 99/231 (42%), Gaps = 35/231 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70
           T +V+K A GS +V++G++ +LT AT+ +K+      P+ +   +  +   +Y       
Sbjct: 19  TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR    +    R+I R +R +         Q+I        D   + AA+
Sbjct: 73  GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
            G+ +AL               +S +   G +A +  G + G  I++    +     ++ 
Sbjct: 130 FGSSLAL--------------SISDIPFNGPIAGVQVGYVDGEFIINPRKEQKEVSLLEL 175

Query: 190 NFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
               T D+ ++VE  G+ E    S+D     L    + + +LI  Q+++++
Sbjct: 176 TVAGTKDAINMVE-SGAKE---LSEDIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|255994504|ref|ZP_05427639.1| polyribonucleotide nucleotidyltransferase [Eubacterium saphenum
           ATCC 49989]
 gi|255993217|gb|EEU03306.1| polyribonucleotide nucleotidyltransferase [Eubacterium saphenum
           ATCC 49989]
          Length = 696

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 73/179 (40%), Gaps = 33/179 (18%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R   R+  ++R I     +   A GS L K G+T +L+ ATL    + +V   I     
Sbjct: 315 IRPDDRKRTEVRPIWCDTSILPRAHGSGLFKRGETQVLSAATLGGIGDAQVIDGIGVETE 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR-ALRSVVDLSALGSRQ---- 111
                 Y   P S G     EA   R  GR     R IG  AL     L  L S++    
Sbjct: 375 KRYMHHYNFPPYSVG-----EARPIRSPGR-----REIGHGALAERALLPVLPSKEDFPY 424

Query: 112 -IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            I +  DV+ ++G T  A++ G+ +AL D                 +K  VA I+ G++
Sbjct: 425 TIRVVSDVLSSNGSTSQASVCGSCMALMDA-------------GVPIKAPVAGIAMGLI 470


>gi|224060110|ref|XP_002300042.1| predicted protein [Populus trichocarpa]
 gi|222847300|gb|EEE84847.1| predicted protein [Populus trichocarpa]
          Length = 961

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 73/185 (39%), Gaps = 24/185 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR+ +++R +           GS L   GDT +L T TL         ++  G  T
Sbjct: 366 FRVDGRRLDEVRPLYCEAGYLPNLHGSSLFSRGDTQVLCTVTLGAPRDAQRLDSLVGPPT 425

Query: 61  AE----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S     KR  ++ R+ G       +  +AL +V+         + I+ 
Sbjct: 426 KRFMLHYSFPPFSINEVGKRVGLNRREVGHGT----LAEKALLAVLPPEDDFPYTVRINS 481

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ +DG T  A + G  VA+ D                 L+ HVA +S G++     VD
Sbjct: 482 EVMASDGSTSMATVCGGSVAMMDA-------------GIPLQEHVAGVSVGLVSE---VD 525

Query: 177 LDYGE 181
              GE
Sbjct: 526 PSTGE 530


>gi|160932224|ref|ZP_02079615.1| hypothetical protein CLOLEP_01059 [Clostridium leptum DSM 753]
 gi|156868826|gb|EDO62198.1| hypothetical protein CLOLEP_01059 [Clostridium leptum DSM 753]
          Length = 733

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 71/178 (39%), Gaps = 33/178 (18%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  +QMR ++    +     GS +   G T ++T ATL    ++++   I   +  
Sbjct: 315 RVDGRAMDQMRPLAAEVGLLPRVHGSGMFTRGQTQVITAATLGPVSDQQLLDGIDGEEFK 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111
               +Y     S G     E    R  GR     R IG      RAL  V+         
Sbjct: 375 RYMHQYNFPSYSVG-----ETRPSRGPGR-----REIGHGALAERALLPVIPPVEEFPYA 424

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             +  +V+ ++G T  A+I G+ +AL D                 +K  VA ISCG++
Sbjct: 425 YRLVSEVVSSNGSTSQASICGSTLALMDA-------------GVPIKAPVAGISCGLI 469


>gi|119510054|ref|ZP_01629194.1| polyribonucleotide nucleotidyltransferase [Nodularia spumigena
           CCY9414]
 gi|119465241|gb|EAW46138.1| polyribonucleotide nucleotidyltransferase [Nodularia spumigena
           CCY9414]
          Length = 718

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 96/228 (42%), Gaps = 35/228 (15%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGNR 73
           ++  A GS L++ GDT +L TAT  +       +P+ +   +  +         R  G  
Sbjct: 22  LAPQAGGSVLIESGDTSVLVTATRSKGREGIDFLPLTVDYEERLYAAG------RIPGGI 75

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
           ++RE   GR   ++    R+I R +R +         QII     +         A+TGA
Sbjct: 76  MRRE---GRPPEKTILTSRLIDRPMRPLFPTWLRDDLQIIAFTLSMDELVPPDVLAVTGA 132

Query: 134 WVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
            +A                ++Q+   G +AA+  G++    I++  Y E    D+D   +
Sbjct: 133 SIAT--------------LMAQIPFNGPMAAVRVGLVGDDFIINPTYAETENGDLD--LI 176

Query: 193 MTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +  S H ++ V+  A +    +      ++   + + DLI+ Q+D+++
Sbjct: 177 VAGSPHGVIMVEAGANQ--LPEQDIIEAIDFGYEAVRDLIQAQQDLLA 222


>gi|330807487|ref|YP_004351949.1| polyribonucleotide nucleotidyltransferase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327375595|gb|AEA66945.1| Putative polyribonucleotide nucleotidyltransferase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 701

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++++++  + +    I +
Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M+       +  V +G   A+   +L
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDIL 483


>gi|225018458|ref|ZP_03707650.1| hypothetical protein CLOSTMETH_02405 [Clostridium methylpentosum
           DSM 5476]
 gi|224948767|gb|EEG29976.1| hypothetical protein CLOSTMETH_02405 [Clostridium methylpentosum
           DSM 5476]
          Length = 722

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 26/195 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLPRSTGN 72
           T + S+ A GSC V++G+T ++   T+  K    V  +  +  +       G +P   G+
Sbjct: 40  TGKTSELANGSCWVRYGETVVMANVTMSAKPREGVDFFPLSVDYEEKLYAVGKIP---GS 96

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE+   R   R+    R+I R +R +          ++        D      A+T 
Sbjct: 97  FLKRES---RPSERAILTSRVIDRPIRPLFPKDMRNDVSVVATVLATDVDNSPEVVAMTA 153

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
             +A+               +S +   G VA++S G++ G  +++ +  E +  D+D   
Sbjct: 154 VAIAI--------------SISDIPWNGPVASVSVGLVDGKFVLNPNIEERAKSDLDLT- 198

Query: 192 VMTDSGHIVEVQGSA 206
           V +    IV ++  A
Sbjct: 199 VASSGEKIVMIEAGA 213


>gi|224825869|ref|ZP_03698973.1| Polyribonucleotide nucleotidyltransferase [Lutiella nitroferrum
           2002]
 gi|224602093|gb|EEG08272.1| Polyribonucleotide nucleotidyltransferase [Lutiella nitroferrum
           2002]
          Length = 719

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 27/176 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R I++   V     GS L   G+T  +   TL  +    I +   G  T 
Sbjct: 316 RIDGRDTRTVRPIAIRTGVLPRTHGSALFTRGETQAMVVTTLGTQRDEQIIDALAGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P STG        +GR G  + +EI   R+  RAL  V+  +      + +
Sbjct: 376 RFMLHYNFPPYSTGE-------AGRMGPPKRREIGHGRLAKRALAQVLPSADEFGYSMRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
             ++ +++G +  A++ G  +AL +                 LK HVA I+ G++ 
Sbjct: 429 VSEITESNGSSSMASVCGGCLALLNA-------------GVPLKAHVAGIAMGLIL 471


>gi|255567379|ref|XP_002524669.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
           communis]
 gi|223536030|gb|EEF37688.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
           communis]
          Length = 958

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 72/185 (38%), Gaps = 24/185 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR+ +++R +           GS L   GDT +L T TL          +  G  T
Sbjct: 365 FRVDGRRLDEVRPLFCKAGPLPILHGSSLFNRGDTQVLCTVTLGAPGDAQRLESLVGPPT 424

Query: 61  A----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S     KR  ++ R+ G       +  +AL +V+         + I+ 
Sbjct: 425 KRFMLHYSFPPFSINEVGKRVGLNRREVGHGT----LAEKALLAVLPPEDDFPYTVRINS 480

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ +DG T  A + G  +AL D                 L+ HVA +S G++     VD
Sbjct: 481 EVMASDGSTSMATVCGGSMALMDA-------------GIPLREHVAGVSVGLVSE---VD 524

Query: 177 LDYGE 181
              GE
Sbjct: 525 PSTGE 529


>gi|212703635|ref|ZP_03311763.1| hypothetical protein DESPIG_01680 [Desulfovibrio piger ATCC 29098]
 gi|212672930|gb|EEB33413.1| hypothetical protein DESPIG_01680 [Desulfovibrio piger ATCC 29098]
          Length = 750

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 9/144 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR    +R I +   V   A GS + + G+T  L   TL          +  G +T
Sbjct: 322 VRIDGRDTKTVRPIQIQTSVLPRAHGSAIFRRGETKSLVVTTLGSSTDEQRMGSLSGDVT 381

Query: 61  AE----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G  VK   VS R+ G       +  ++LR V+   A     + +  
Sbjct: 382 KRFMLHYNFPPFSVGE-VKPVRVSRREIGHGA----LAEKSLRPVMPADADFPFTVRVVS 436

Query: 117 DVIQADGGTRTAAITGAWVALHDC 140
           + ++++G +  AA+ G  ++L D 
Sbjct: 437 ETVESNGSSSMAAVCGGCLSLMDA 460


>gi|74184409|dbj|BAE25732.1| unnamed protein product [Mus musculus]
          Length = 783

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 38/200 (19%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++++A+G  +++ GDT ++ TA  + K      +P+ +   +     A  G +P    N
Sbjct: 62  KLARFADGCAVIQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKA---AAAGRIPT---N 115

Query: 73  RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128
            ++RE      G   +E+   R+I R++R +         Q++  C+++  DG       
Sbjct: 116 YLRREI-----GSSDREVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEPDIL 168

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           A+ GA VAL               LS +   G V A+  GM+ G  +V+    E S+  +
Sbjct: 169 AVNGASVAL--------------SLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTL 214

Query: 188 DANFVMTDSGHIVEVQGSAE 207
           +          IV ++ SAE
Sbjct: 215 NLVVAGAPKSQIVMLEASAE 234


>gi|57238127|ref|YP_179377.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           RM1221]
 gi|81353435|sp|Q5HTK8|PNP_CAMJR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|57166931|gb|AAW35710.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           RM1221]
 gi|315058687|gb|ADT73016.1| Polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 719

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 4/138 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWI 59
           R  GR  N++R IS+   +   A GSCL   G T  L  ATL  E    M    T+   I
Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           +  + +     G  V   +     G R      +  RAL   VD +     +++   +++
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLV--SEIL 453

Query: 120 QADGGTRTAAITGAWVAL 137
           +++G +  A + G  +AL
Sbjct: 454 ESNGSSSMATVCGGSLAL 471


>gi|330958045|gb|EGH58305.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 701

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++++++  + +    I +
Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M+       +  V +G   AI   +L
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 483


>gi|237798567|ref|ZP_04587028.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331021420|gb|EGI01477.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 701

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++++++  + +    I +
Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M+       +  V +G   AI   +L
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 483


>gi|206890011|ref|YP_002249618.1| polyribonucleotide nucleotidyltransferase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|257096715|sp|B5YHN2|PNP_THEYD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|206741949|gb|ACI21006.1| polyribonucleotide nucleotidyltransferase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 710

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 18/149 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
           +R  GR+ +++R I+    +     GS L   G+T  L   TL     E+KV     ++ 
Sbjct: 319 IRADGRKSDEIRPITCMIGILPRVHGSALFTRGETQALVATTLGTSEDEQKV-----DSL 373

Query: 56  HGWI----TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
            G I       Y  LP S G      A   R+ G       +  RAL  V+         
Sbjct: 374 EGEIFKTFMLHYNFLPFSVGEVKPLRAPGRREIGHGY----LAERALSYVIPSKDEFPYT 429

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDC 140
           I +  D+++++G +  A + GA ++L D 
Sbjct: 430 IRVVSDILESNGSSSMATVCGATLSLMDA 458


>gi|307293331|ref|ZP_07573177.1| polyribonucleotide nucleotidyltransferase [Sphingobium
           chlorophenolicum L-1]
 gi|306881397|gb|EFN12613.1| polyribonucleotide nucleotidyltransferase [Sphingobium
           chlorophenolicum L-1]
          Length = 781

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 90/228 (39%), Gaps = 18/228 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR   Q+R I           GS L   G+T  + T TL     E++   +    + 
Sbjct: 316 RIDGRTTTQIRPIEAIVGFLPRTHGSALFTRGETQSICTTTLGTKDAEQMIDGLNGVYYE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  V R    GR   R     ++  RAL  V+         I +  D
Sbjct: 376 NFMLHYNFPPYSVGE-VGRFGAPGR---REVGHGKLAWRALHPVLPSKDEFPYTIRVLSD 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +++ D    ++   +   +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKNFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
              ED   D+D     T++G I  +Q   + A  +Q+ F   L  AK+
Sbjct: 483 LGDEDHLGDMDFKVAGTEAG-ITTMQMDIKVAGITQEIFEVALRQAKE 529


>gi|114765823|ref|ZP_01444916.1| polyribonucleotide nucleotidyltransferase [Pelagibaca bermudensis
           HTCC2601]
 gi|114541822|gb|EAU44859.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp.
           HTCC2601]
          Length = 463

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 93/233 (39%), Gaps = 27/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R I     V     GS L   G+T  L   TL       I +  HG   +
Sbjct: 68  RIDGRALDQVRPIQSETSVLPRTHGSSLFTRGETQALVVTTLGTGDDEQIIDALHGNFRS 127

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  V R    GR   R     ++  RAL++V+         I +  +
Sbjct: 128 NFLLHYNFPPYSVGE-VGRVGSPGR---REIGHGKLAWRALQAVLPAPTDFPYTIRLVSE 183

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GYP 173
           + +++G +  A++ G  +++ D                 LK  VA ++ G++      Y 
Sbjct: 184 ITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLVLEDDGEYA 230

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
           I+ D+   ED   D+D     T++G I  +Q   + A  + +     L  AKD
Sbjct: 231 ILTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMKKALAQAKD 282


>gi|332359947|gb|EGJ37761.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK1056]
          Length = 733

 Score = 37.4 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 15/127 (11%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70
           T +V+K A GS +V++G++ +LT AT+ +K+      P+ +   +  +   +Y       
Sbjct: 19  TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR    +    R+I R +R +         Q+I        D   + AA+
Sbjct: 73  GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129

Query: 131 TGAWVAL 137
            G+ +AL
Sbjct: 130 FGSSLAL 136


>gi|332359275|gb|EGJ37096.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK49]
          Length = 733

 Score = 37.4 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 15/127 (11%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70
           T +V+K A GS +V++G++ +LT AT+ +K+      P+ +   +  +   +Y       
Sbjct: 19  TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR    +    R+I R +R +         Q+I        D   + AA+
Sbjct: 73  GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129

Query: 131 TGAWVAL 137
            G+ +AL
Sbjct: 130 FGSSLAL 136


>gi|148691867|gb|EDL23814.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_b [Mus
           musculus]
          Length = 551

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 38/200 (19%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEK------VPMWIRNTKHGWITAEYGMLPRSTGN 72
           +++++A+G  +++ GDT ++ TA  + K      +P+ +   +     A  G +P    N
Sbjct: 66  KLARFADGCAVIQSGDTAVMVTAVSKTKASPSQFMPLVVDYRQKA---AAAGRIPT---N 119

Query: 73  RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--A 128
            ++RE      G   +E+   R+I R++R +         Q++  C+++  DG       
Sbjct: 120 YLRREI-----GSSDREVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEPDIL 172

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           A+ GA VAL               LS +   G V A+  GM+ G  +V+    E S+  +
Sbjct: 173 AVNGASVAL--------------SLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTL 218

Query: 188 DANFVMTDSGHIVEVQGSAE 207
           +          IV ++ SAE
Sbjct: 219 NLVVAGAPKSQIVMLEASAE 238


>gi|66047403|ref|YP_237244.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. syringae B728a]
 gi|75500706|sp|Q4ZNR6|PNP_PSEU2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|63258110|gb|AAY39206.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 701

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++++++  + +    I +
Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M+       +  V +G   AI   +L
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 483


>gi|312129691|ref|YP_003997031.1| polyribonucleotide nucleotidyltransferase [Leadbetterella
           byssophila DSM 17132]
 gi|311906237|gb|ADQ16678.1| polyribonucleotide nucleotidyltransferase [Leadbetterella
           byssophila DSM 17132]
          Length = 718

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 8/143 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
           RL GR+  ++R I++       A GS L   G+T  L+T TL  K+   I +      + 
Sbjct: 317 RLDGRKLTEIRPITVEVDYLPSAHGSALFTRGETQSLSTTTLGTKLDEQIVDLPMVKGYS 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     STG       V  R+ G     Q    R+L  V+         I +  D
Sbjct: 377 KFYLHYNFPGFSTGEVRPNRGVGRREIGHGNLAQ----RSLERVMPPEEENPYTIRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           +++++G +  A +    ++L D 
Sbjct: 433 ILESNGSSSMATVCAGCLSLMDA 455


>gi|71734516|ref|YP_276307.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|257482257|ref|ZP_05636298.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|289627537|ref|ZP_06460491.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289646965|ref|ZP_06478308.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|123747552|sp|Q48E81|PNP_PSE14 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|71555069|gb|AAZ34280.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|330868250|gb|EGH02959.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330888654|gb|EGH21315.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. mori str. 301020]
 gi|330987059|gb|EGH85162.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. lachrymans str. M301315]
 gi|331011503|gb|EGH91559.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 701

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++++++  + +    I +
Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M+       +  V +G   AI   +L
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 483


>gi|332365583|gb|EGJ43343.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK1059]
          Length = 733

 Score = 37.4 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 15/127 (11%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70
           T +V+K A GS +V++G++ +LT AT+ +K+      P+ +   +  +   +Y       
Sbjct: 19  TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR    +    R+I R +R +         Q+I        D   + AA+
Sbjct: 73  GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129

Query: 131 TGAWVAL 137
            G+ +AL
Sbjct: 130 FGSSLAL 136


>gi|221632640|ref|YP_002521861.1| polynucleotide phosphorylase/polyadenylase [Thermomicrobium roseum
           DSM 5159]
 gi|257096714|sp|B9KYR9|PNP_THERP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|221156259|gb|ACM05386.1| polyribonucleotide nucleotidyltransferase [Thermomicrobium roseum
           DSM 5159]
          Length = 790

 Score = 37.4 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 12/144 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKV--PMWIRNTK 55
           R  GR+ +++REI +   +     GS L   G T +LT  TL    EE+    + I  TK
Sbjct: 325 RPDGRKPDEIREIWIQVGLLPRPHGSALFTRGQTQVLTVCTLGTKEEEQFLDSLGIEETK 384

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P STG   +    S R  G       +  RAL +V+         + + 
Sbjct: 385 R--YMHHYNFPPFSTGEIRRLRGPSRRDIGHGA----LAERALLAVLPSEDEFPYTMRLV 438

Query: 116 CDVIQADGGTRTAAITGAWVALHD 139
            +V+ ++G T  A++ G+ +AL D
Sbjct: 439 SEVLSSNGSTSMASVCGSSLALMD 462


>gi|320322524|gb|EFW78617.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320330007|gb|EFW85994.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330875199|gb|EGH09348.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 701

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++++++  + +    I +
Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M+       +  V +G   AI   +L
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 483


>gi|253701574|ref|YP_003022763.1| polynucleotide phosphorylase/polyadenylase [Geobacter sp. M21]
 gi|259534126|sp|C6E2P5|PNP_GEOSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|251776424|gb|ACT19005.1| Polyribonucleotide nucleotidyltransferase [Geobacter sp. M21]
          Length = 696

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 38/221 (17%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R IS    +   A GS L   G+T  +  ATL     E+++     +++ 
Sbjct: 312 RIDGRDTKTIRAISTEVSLLPRAHGSALFTRGETQSIVAATLGTSVDEQRIDSLYGDSRK 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++   Y   P S G    R A   R+ G     +R + + L    D        I I  
Sbjct: 372 KFML-HYNFPPYSVGETSFRLAPGRREIGHGMLAERALQQVLPKHDDF----PYTIRIVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           D+ +++G +  A + G  +++ D                 +K  VA I+ G+        
Sbjct: 427 DITESNGSSSMATVCGGSLSMMDA-------------GIPIKAPVAGIAMGL-------- 465

Query: 177 LDYGEDSTIDVDANFVMTDSGHI----VEVQGSAERATFSQ 213
           +  G+D  I  D   ++ D  H+     +V G+AE  T  Q
Sbjct: 466 IKEGDDFAILSD---ILGDEDHLGDMDFKVAGTAEGVTALQ 503


>gi|86152881|ref|ZP_01071086.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|85843766|gb|EAQ60976.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni HB93-13]
          Length = 719

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 4/138 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWI 59
           R  GR  N++R IS+   +   A GSCL   G T  L  ATL  E    M    T+   I
Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           +  + +     G  V   +     G R      +  RAL   VD +     +++   +++
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYIIRLV--SEIL 453

Query: 120 QADGGTRTAAITGAWVAL 137
           +++G +  A + G  +AL
Sbjct: 454 ESNGSSSMATVCGGSLAL 471


>gi|78222801|ref|YP_384548.1| polynucleotide phosphorylase/polyadenylase [Geobacter
           metallireducens GS-15]
 gi|123729281|sp|Q39VA1|PNP_GEOMG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78194056|gb|ABB31823.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Geobacter
           metallireducens GS-15]
          Length = 697

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 10/144 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R I+    +     GS L   G+T  L  ATL     E+++      ++ 
Sbjct: 313 RIDGRDTKTIRPITSEVGILPRVHGSALFTRGETQALVAATLGTSSDEQRIDSLYGESRK 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++   Y   P S G    R A   R+ G     +R + R L    D        I I  
Sbjct: 373 RFML-HYNFPPFSVGETSFRLAPGRREIGHGYLAERALERVLPKHDDF----PYTIRIVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDC 140
           D+++++G +  A++ G  +++ D 
Sbjct: 428 DILESNGSSSMASVCGGALSMMDA 451


>gi|298488460|ref|ZP_07006491.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298157085|gb|EFH98174.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 701

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++++++  + +    I +
Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M+       +  V +G   AI   +L
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 483


>gi|330969656|gb|EGH69722.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aceris str. M302273PT]
          Length = 701

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++++++  + +    I +
Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M+       +  V +G   AI   +L
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 483


>gi|327468357|gb|EGF13842.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK330]
          Length = 733

 Score = 37.4 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 15/127 (11%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70
           T +V+K A GS +V++G++ +LT AT+ +K+      P+ +   +  +   +Y       
Sbjct: 19  TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR    +    R+I R +R +         Q+I        D   + AA+
Sbjct: 73  GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129

Query: 131 TGAWVAL 137
            G+ +AL
Sbjct: 130 FGSSLAL 136


>gi|324996021|gb|EGC27932.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK678]
 gi|327460682|gb|EGF07017.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK1]
 gi|327472404|gb|EGF17835.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK408]
 gi|327488757|gb|EGF20556.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK1058]
          Length = 733

 Score = 37.4 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 15/127 (11%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRST 70
           T +V+K A GS +V++G++ +LT AT+ +K+      P+ +   +  +   +Y       
Sbjct: 19  TGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKY------P 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR    +    R+I R +R +         Q+I        D   + AA+
Sbjct: 73  GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 129

Query: 131 TGAWVAL 137
            G+ +AL
Sbjct: 130 FGSSLAL 136


>gi|313608979|gb|EFR84725.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL F2-208]
          Length = 184

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 17/126 (13%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTG 71
           +++K A G+ L+++GDT +LT A   +K     R      +T  Y       G +P   G
Sbjct: 22  QLAKQASGAALIRYGDTVVLTAAVGSKKP----RPGDFFPLTVNYEEKMYSVGKVP---G 74

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
             +KRE   GR   R+    R+I R +R +         QI      +  D     AA+ 
Sbjct: 75  GFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAML 131

Query: 132 GAWVAL 137
           G+ VAL
Sbjct: 132 GSSVAL 137


>gi|302185436|ref|ZP_07262109.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. syringae 642]
          Length = 701

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++++++  + +    I +
Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M+       +  V +G   AI   +L
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 483


>gi|121612552|ref|YP_001000929.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|167005840|ref|ZP_02271598.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|187610251|sp|A1W0N8|PNP_CAMJJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|87249933|gb|EAQ72892.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 81-176]
          Length = 719

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 4/138 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWI 59
           R  GR  N++R IS+   +   A GSCL   G T  L  ATL  E    M    T+   I
Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           +  + +     G  V   +     G R      +  RAL   VD +     +++   +++
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYIIRLV--SEIL 453

Query: 120 QADGGTRTAAITGAWVAL 137
           +++G +  A + G  +AL
Sbjct: 454 ESNGSSSMATVCGGSLAL 471


>gi|28871621|ref|NP_794240.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213966643|ref|ZP_03394794.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
           tomato T1]
 gi|301383153|ref|ZP_07231571.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. tomato Max13]
 gi|302061771|ref|ZP_07253312.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. tomato K40]
 gi|302133785|ref|ZP_07259775.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|81729685|sp|Q87WQ8|PNP_PSESM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|28854873|gb|AAO57935.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213928493|gb|EEB62037.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
           tomato T1]
 gi|330963979|gb|EGH64239.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. actinidiae str. M302091]
 gi|331016652|gb|EGH96708.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 701

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++++++  + +    I +
Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M+       +  V +G   AI   +L
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 483


>gi|269958853|ref|YP_003328641.1| polynucleotide phosphorylase/polyadenylase [Anaplasma centrale str.
           Israel]
 gi|269848683|gb|ACZ49327.1| polynucleotide phosphorylase/polyadenylase [Anaplasma centrale str.
           Israel]
          Length = 802

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 25/174 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  +Q+R I +   +   + GS L   GDT  L    L    +E+V       +  
Sbjct: 320 RVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVITALGTPQDEQVVDGFDGDRRE 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIID 115
                Y     + G     EA + R  GR +EI   ++  RA+  V+   A     I + 
Sbjct: 380 RFLLHYNFPSYAVG-----EAAALRPPGR-REIGHGKLAWRAIHPVLPTKADFPYTIRVV 433

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            ++ ++DG +  A + GA +AL D                 LK  VA I+ G++
Sbjct: 434 SEITESDGSSSMATVCGASLALMDT-------------GVPLKSSVAGIAMGLI 474


>gi|313892760|ref|ZP_07826341.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442691|gb|EFR61102.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 689

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 92/229 (40%), Gaps = 35/229 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T  ++K A G+ +V +GDT +L TAT  ++     ++     +T +Y       G LP  
Sbjct: 17  TGELAKQAGGAVMVGYGDTRVLVTATGSKEA----KDIDFFPLTVDYEEKMYAVGRLP-- 70

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KREA   R    +    R+I R +R + D        ++     +  D       
Sbjct: 71  -GGFIKREA---RPPETAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQDCDPAVCG 126

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           + GA  AL               +S V   G +A +  G + G  +V+    +    D++
Sbjct: 127 MIGASAAL--------------SISDVPWNGPIAGVRMGRINGEFVVNPTKAQLEETDLN 172

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
                T    I+ V+G AE     +D    ++  A + I  ++  Q+D+
Sbjct: 173 IVVAGTKDA-ILMVEGGAEE--VPEDIILEVIMAAHEEIKKIVAFQEDM 218


>gi|260578909|ref|ZP_05846813.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Corynebacterium jeikeium ATCC
           43734]
 gi|258602961|gb|EEW16234.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Corynebacterium jeikeium ATCC
           43734]
          Length = 764

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 23/176 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
            R+ GR    +R++ +  ++   A GS L + G+T +L   TL     E+++      T 
Sbjct: 377 FRIDGRDSTTIRDLGIVVQLIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLGPETS 436

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I   Y   P STG   +  +   R+ G     +R +   + S  D      RQ+   
Sbjct: 437 KRYIH-HYNFPPYSTGETGRVGSPKRREIGHGALAERALTPVIPSRDDFP-YTIRQV--- 491

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
            + + ++G T   ++  + ++L++                 LK  VA I+ G++ G
Sbjct: 492 SEALSSNGSTSMGSVCASTLSLYNA-------------GVPLKAPVAGIAMGLVTG 534


>gi|224141741|ref|XP_002324223.1| predicted protein [Populus trichocarpa]
 gi|222865657|gb|EEF02788.1| predicted protein [Populus trichocarpa]
          Length = 243

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 79/216 (36%), Gaps = 29/216 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R +S  R V   A GS     GDT +L            +   K G    
Sbjct: 5   RDDGRSPSQLRPLSCARNVLHRAHGSASWSQGDTKVLAA----------VYGPKAGTKKN 54

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           E    P      V  +  +G+ G   +E + ++ R L+S+  L+   +    I   V+  
Sbjct: 55  EN---PEKACIEVIWKPKTGQIGKLEKEFEMILKRTLQSICILTLNPNTTTSIIVQVVND 111

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC--GYPIVDLDY 179
           DG     AI  A  AL D    M+              H+A   C  L   GY I+D   
Sbjct: 112 DGALLVCAINAACAALVDAGIPMK--------------HLAVAICCCLAEGGYVILDPTK 157

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
            E+  +      V  +S   V  +GS+       +H
Sbjct: 158 LEEQKMRGFTYLVFPNSVVSVLPEGSSHVEGEPMEH 193


>gi|68536209|ref|YP_250914.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           jeikeium K411]
 gi|123650906|sp|Q4JV61|PNP_CORJK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|68263808|emb|CAI37296.1| polyribonucleotide nucleotidyltransferase [Corynebacterium jeikeium
           K411]
          Length = 764

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 23/176 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
            R+ GR    +R++ +  ++   A GS L + G+T +L   TL     E+++      T 
Sbjct: 377 FRIDGRDSTTIRDLGIVVQLIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLGPETS 436

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I   Y   P STG   +  +   R+ G     +R +   + S  D      RQ+   
Sbjct: 437 KRYIH-HYNFPPYSTGETGRVGSPKRREIGHGALAERALTPVIPSRDDFP-YTIRQV--- 491

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
            + + ++G T   ++  + ++L++                 LK  VA I+ G++ G
Sbjct: 492 SEALSSNGSTSMGSVCASTLSLYNA-------------GVPLKAPVAGIAMGLVTG 534


>gi|163739819|ref|ZP_02147226.1| Polyribonucleotide nucleotidyltransferase [Phaeobacter
           gallaeciensis BS107]
 gi|161386853|gb|EDQ11215.1| Polyribonucleotide nucleotidyltransferase [Phaeobacter
           gallaeciensis BS107]
          Length = 712

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 93/234 (39%), Gaps = 29/234 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R I     +     GS L   G+T  L   TL     E+ +     N K 
Sbjct: 318 RIDGRSTTDVRAIESETGMLPRTHGSALFTRGETQALAVTTLGTGDDEQFIDALHGNFKS 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++   Y   P S G  V R    GR   R     ++  RAL++V+         I +  
Sbjct: 378 NFLL-HYNFPPYSVG-EVGRVGSPGR---REIGHGKLAWRALQAVLPAPTDFPYTIRVVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GY 172
           ++ +++G +  A++ G  +++ D                 LK  VA ++ G++      Y
Sbjct: 433 EITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLILEDDGSY 479

Query: 173 PIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
            I+ D+   ED   D+D     TD G I  +Q   + A  + +     L+ AKD
Sbjct: 480 AILSDILGDEDHLGDMDFKVAGTDKG-ITSLQMDIKVAGITPEIMEKALDQAKD 532


>gi|330895301|gb|EGH27639.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. japonica str. M301072PT]
          Length = 701

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++++++  + +    I +
Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M+       +  V +G   AI   +L
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 483


>gi|317121863|ref|YP_004101866.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591843|gb|ADU51139.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
           marianensis DSM 12885]
          Length = 752

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 9/145 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-----K 55
           +R  GR+ +++R I +   +   A GS L + G T +LT A+L       + +T     +
Sbjct: 320 IRPDGRRPDEIRPIHVEVGLLPRAHGSGLFQRGQTQVLTVASLGAPGDRQMLDTLGQIEE 379

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P STG      A S R+ G       +  RAL  V+         I + 
Sbjct: 380 FKRYMHHYNFPPYSTGEVAPLRAPSRREIGHGA----LAERALVPVLPDELEFPYTIRLV 435

Query: 116 CDVIQADGGTRTAAITGAWVALHDC 140
            +V+ ++G T  A+  G+ +AL D 
Sbjct: 436 SEVLSSNGSTSMASTCGSTLALMDA 460



 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 10/123 (8%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGWITAEY--GMLPRSTGNRV 74
           ++++ A GS LV++GDT +L TAT  ++    I     +  W    Y  G +P   G+  
Sbjct: 29  QLAQQANGSALVRYGDTVILATATASKEPRQGIDFFPLRVDWEERLYAAGRIP---GSFF 85

Query: 75  KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
           +RE   G+   R+    R+  R LR +         QII+       D     A I GA 
Sbjct: 86  RRE---GKPSERAILSGRLTDRPLRPLFPKGYRNDVQIIVTTLSYDDDCSPEIAGIIGAS 142

Query: 135 VAL 137
           VAL
Sbjct: 143 VAL 145


>gi|313901841|ref|ZP_07835262.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467884|gb|EFR63377.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 762

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 9/145 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-----K 55
           +R  GR+  ++R I +   +   A GS L + G T +LT A+L       + +T     +
Sbjct: 323 IRPDGRRPAEIRPIHVEVGLLPRAHGSGLFQRGQTQVLTVASLGAPGDRQMLDTLGQIEE 382

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P STG      A S R+ G     +R +   L   +D        I + 
Sbjct: 383 FKRYMHHYNFPPYSTGEVAPLRAPSRREIGHGALAERALVPVLPDELDFPY----TIRLV 438

Query: 116 CDVIQADGGTRTAAITGAWVALHDC 140
            +V+ ++G T  A+  G+ +AL D 
Sbjct: 439 SEVLSSNGSTSMASTCGSTLALMDA 463



 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 65/157 (41%), Gaps = 23/157 (14%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWITAEY--GMLPRSTGNRV 74
           ++++ A GS LV++GDT +L TAT   E +  +     +  W    Y  G +P   G+  
Sbjct: 32  QLAQQANGSALVRYGDTVILATATASKEPRQGIDFFPLRVDWEERLYAAGRIP---GSFF 88

Query: 75  KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
           +RE   G+   R+    R+  R LR +         QII+       D     A I GA 
Sbjct: 89  RRE---GKPSERAILSGRLTDRPLRPLFPKGYRNDVQIIVTTLSYDDDCSPEIAGIIGAS 145

Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
           VAL      + D            G V A+  G+L G
Sbjct: 146 VAL-----GISDIP--------WNGPVGAVEVGLLDG 169


>gi|330877224|gb|EGH11373.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 630

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 245 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 304

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++++++  + +    I +
Sbjct: 305 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 357

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M+       +  V +G   AI   +L
Sbjct: 358 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 412


>gi|163744086|ref|ZP_02151452.1| polynucleotide phosphorylase/polyadenylase [Phaeobacter
           gallaeciensis 2.10]
 gi|161382633|gb|EDQ07036.1| polynucleotide phosphorylase/polyadenylase [Phaeobacter
           gallaeciensis 2.10]
          Length = 704

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 93/234 (39%), Gaps = 29/234 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R I     +     GS L   G+T  L   TL     E+ +     N K 
Sbjct: 310 RIDGRSTTDVRAIESETGMLPRTHGSALFTRGETQALAVTTLGTGDDEQFIDALHGNFKS 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++   Y   P S G  V R    GR   R     ++  RAL++V+         I +  
Sbjct: 370 NFLL-HYNFPPYSVG-EVGRVGSPGR---REIGHGKLAWRALQAVLPAPTDFPYTIRVVS 424

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GY 172
           ++ +++G +  A++ G  +++ D                 LK  VA ++ G++      Y
Sbjct: 425 EITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLILEDDGSY 471

Query: 173 PIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
            I+ D+   ED   D+D     TD G I  +Q   + A  + +     L+ AKD
Sbjct: 472 AILSDILGDEDHLGDMDFKVAGTDKG-ITSLQMDIKVAGITPEIMEKALDQAKD 524


>gi|6321634|ref|NP_011711.1| Ski6p [Saccharomyces cerevisiae S288c]
 gi|1176073|sp|P46948|RRP41_YEAST RecName: Full=Exosome complex component SKI6; AltName:
           Full=Extracellular mutant protein 20; AltName:
           Full=Ribosomal RNA-processing protein 41; AltName:
           Full=Superkiller protein 6
 gi|791127|emb|CAA58018.1| G7587 [Saccharomyces cerevisiae]
 gi|1323347|emb|CAA97221.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|45270908|gb|AAS56835.1| YGR195W [Saccharomyces cerevisiae]
 gi|151943471|gb|EDN61782.1| superkiller [Saccharomyces cerevisiae YJM789]
 gi|207345003|gb|EDZ71963.1| YGR195Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256271491|gb|EEU06540.1| Ski6p [Saccharomyces cerevisiae JAY291]
 gi|259146697|emb|CAY79954.1| Ski6p [Saccharomyces cerevisiae EC1118]
 gi|285812388|tpg|DAA08288.1| TPA: Ski6p [Saccharomyces cerevisiae S288c]
 gi|323304789|gb|EGA58548.1| Ski6p [Saccharomyces cerevisiae FostersB]
 gi|323333367|gb|EGA74763.1| Ski6p [Saccharomyces cerevisiae AWRI796]
 gi|323337488|gb|EGA78736.1| Ski6p [Saccharomyces cerevisiae Vin13]
 gi|323348458|gb|EGA82703.1| Ski6p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323354862|gb|EGA86695.1| Ski6p [Saccharomyces cerevisiae VL3]
          Length = 246

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 26/191 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIR-----NT 54
           +RL GR+ N++R    +     +A +GS  ++ G+  ++T      K P   R     +T
Sbjct: 12  LRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLV----KGPKEPRLKSQMDT 67

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
               +     +   S   + +R   S +   R  EIQ  + R     V L+      I I
Sbjct: 68  SKALLNVSVNITKFS---KFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDI 124

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
           +  V++ DGG   + I G  +AL D    M D             +++ IS G+    P+
Sbjct: 125 EIHVLEQDGGIMGSLINGITLALIDAGISMFD-------------YISGISVGLYDTTPL 171

Query: 175 VDLDYGEDSTI 185
           +D +  E++ +
Sbjct: 172 LDTNSLEENAM 182


>gi|330937951|gb|EGH41738.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. pisi str. 1704B]
          Length = 701

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++++++  + +    I +
Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M+       +  V +G   AI   +L
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 483


>gi|301063439|ref|ZP_07203971.1| polyribonucleotide nucleotidyltransferase [delta proteobacterium
           NaphS2]
 gi|300442378|gb|EFK06611.1| polyribonucleotide nucleotidyltransferase [delta proteobacterium
           NaphS2]
          Length = 697

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 9/126 (7%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           T R++K A GS +V  G+T +L TA     + E +       ++  ++   G +P   GN
Sbjct: 17  TGRIAKQANGSVVVTSGETVVLVTAVATDDVREGIDFLPLTVEYQEMSYAGGQIP---GN 73

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
             +R+   GR G +   I R+I R LR +   +     Q+I        +      A+ G
Sbjct: 74  FFRRDM--GRPGEKETLISRLIDRPLRPLFPDNYHYETQVIATVLSTDKENEADMLAMLG 131

Query: 133 AWVALH 138
           A  AL 
Sbjct: 132 ASAALE 137


>gi|46199080|ref|YP_004747.1| polynucleotide phosphorylase/polyadenylase [Thermus thermophilus
           HB27]
 gi|75424073|sp|Q9ZAE1|PNP_THETH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81405907|sp|Q72JJ8|PNP_THET2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|4138650|emb|CAB06341.1| polynucleotide phosphorylase [Thermus thermophilus]
 gi|46196704|gb|AAS81120.1| polynucleotide phosphorylase [Thermus thermophilus HB27]
          Length = 713

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 12/145 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKV--PMWIRNTK 55
           R  GR    +R I +   V   A GS +   G+T +L T TL    +E++   + I  T+
Sbjct: 327 RADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLGTGRDEQILDDLGIDETE 386

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
              +   Y   P STG   +   VS R+ G       +  RAL++V+         I + 
Sbjct: 387 KFLV--HYNFPPFSTGEVRRLRGVSRREVGHGN----LAKRALKAVMPKEEDFPYTIRVV 440

Query: 116 CDVIQADGGTRTAAITGAWVALHDC 140
            DV++++G +  A +    +AL D 
Sbjct: 441 GDVLESNGSSSMATVCAGCLALMDA 465


>gi|332157778|ref|YP_004423057.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. NA2]
 gi|331033241|gb|AEC51053.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. NA2]
          Length = 274

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 18/132 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT--TATLEEKVPMWIRNTKHGWI 59
           R+  R     R IS+   + + AEGS LVK G+T +L     TL E  P        G +
Sbjct: 24  RIDDRGFEDYRPISIEVGIIEKAEGSALVKIGNTQVLVGIKTTLGEPFP---DTPNMGVM 80

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--------VVDLSALGSRQ 111
           T    ++P ++          G    R+ E+ R+I R +R         +V +     R 
Sbjct: 81  TTNVELVPLASPT-----FEPGPPDERAIELARVIDRGIRESRALNLEKMVIVPGKIVRV 135

Query: 112 IIIDCDVIQADG 123
           + ID  V+  DG
Sbjct: 136 VFIDVHVLDHDG 147


>gi|190406796|gb|EDV10063.1| exosome complex exonuclease RRP41 [Saccharomyces cerevisiae
           RM11-1a]
          Length = 246

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 26/191 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIR-----NT 54
           +RL GR+ N++R    +     +A +GS  ++ G+  ++T      K P   R     +T
Sbjct: 12  LRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLV----KGPKEPRLKSQMDT 67

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
               +     +   S   + +R   S +   R  EIQ  + R     V L+      I I
Sbjct: 68  SKALLNVSVNITKFS---KFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDI 124

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
           +  V++ DGG   + I G  +AL D    M D             +++ IS G+    P+
Sbjct: 125 EIHVLEQDGGIMGSLINGITLALIDAGISMFD-------------YISGISVGLYDTTPL 171

Query: 175 VDLDYGEDSTI 185
           +D +  E++ +
Sbjct: 172 LDTNSLEENAM 182


>gi|266618485|pdb|2WP8|B Chain B, Yeast Rrp44 Nuclease
          Length = 246

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 80/191 (41%), Gaps = 26/191 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIR-----NT 54
           +RL GR+ N++R    +     +A +GS  ++ G+  ++T      K P   R     +T
Sbjct: 12  LRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLV----KGPKEPRLKSQMDT 67

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
               +     +   +  ++ +R   S +   R  EIQ  + R     V L+      I I
Sbjct: 68  SKALLNVSVNI---NKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDI 124

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
           +  V++ DGG   + I G  +AL D    M D             +++ IS G+    P+
Sbjct: 125 EIHVLEQDGGIMGSLINGITLALIDAGISMFD-------------YISGISVGLYDTTPL 171

Query: 175 VDLDYGEDSTI 185
           +D +  E++ +
Sbjct: 172 LDTNSLEENAM 182


>gi|311747141|ref|ZP_07720926.1| polyribonucleotide nucleotidyltransferase [Algoriphagus sp. PR1]
 gi|126578849|gb|EAZ83013.1| polyribonucleotide nucleotidyltransferase [Algoriphagus sp. PR1]
          Length = 712

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 8/143 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGW- 58
           RL GR+ N++R I         A GS +   G+T  LTT TL  K+   + +  T  G+ 
Sbjct: 319 RLDGRKLNEVRPIWSVVDYLPSAHGSAVFTRGETQSLTTCTLGTKMDEMMVDGATISGYN 378

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     STG          R+ G       +  RAL+ V+  +      I I  D
Sbjct: 379 KFYLHYNFPGFSTGEVKPNRGPGRREVGHGN----LAMRALKKVLPPAEENPYTIRIVSD 434

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           +++++G +  A +    +A+ D 
Sbjct: 435 ILESNGSSSMATVCAGSLAMMDA 457


>gi|71649471|ref|XP_813459.1| exosome complex exonuclease RRP41A [Trypanosoma cruzi strain CL
           Brener]
 gi|70878342|gb|EAN91608.1| exosome complex exonuclease RRP41A, putative [Trypanosoma cruzi]
          Length = 195

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 13/151 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN---TKHG 57
           +RL GR+  + R ++L        +G C V  G    L T       P  + N   +K+ 
Sbjct: 13  LRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSG----LATVCASVYGPREVTNRLESKYN 68

Query: 58  --WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
              IT E  +   +   R   +    R+   S+E+   +    RSVV LS   + QI I 
Sbjct: 69  ECIITCEVAIAAFAGEKRRAPQ----RRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHIC 124

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMED 146
            +V++ DG  + A I  A +AL D    M D
Sbjct: 125 VEVLRQDGSDKAACINAACLALVDASVAMRD 155


>gi|295698477|ref|YP_003603132.1| polyribonucleotide nucleotidyltransferase [Candidatus Riesia
           pediculicola USDA]
 gi|291157180|gb|ADD79625.1| polyribonucleotide nucleotidyltransferase [Candidatus Riesia
           pediculicola USDA]
          Length = 705

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 21/173 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +R+ GR+ N++R+I     V     GS L   G+T  L   TL  +    IR+     K 
Sbjct: 319 IRIDGRKLNEIRKIDCRVGVLSRTHGSSLFTRGETQTLVIVTLGNERDAQIRDEIVGEKL 378

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y  LP S G          R+ G       ++ R + +V+   +  S  I +  
Sbjct: 379 DHFILHYNFLPYSVGEIGLVGVPKRREIGHGN----LVKRGMIAVMPNFSNFSYTIRVVS 434

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           +VI+++G +  A+  G  +A+ D                 +K  +A IS G++
Sbjct: 435 EVIESNGSSSMASACGTSLAMMDA-------------GIPIKSAIAGISIGLI 474


>gi|217970113|ref|YP_002355347.1| polynucleotide phosphorylase/polyadenylase [Thauera sp. MZ1T]
 gi|217507440|gb|ACK54451.1| Polyribonucleotide nucleotidyltransferase [Thauera sp. MZ1T]
          Length = 699

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  ATL    +E++   I      
Sbjct: 316 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDAIAGEYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P  TG   +      R+ G      R+  R+L +++      S  + +  +
Sbjct: 376 RFLLHYNFPPFCTGETGRFGITKRREVGHG----RLAKRSLVAMLPKPEEFSYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A++ G  +A+ D                 LK HVA I+ G++
Sbjct: 432 ITESNGSSSMASVCGGSLAMMDA-------------GVPLKNHVAGIAMGLI 470


>gi|205356272|ref|ZP_03223038.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|205345877|gb|EDZ32514.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni CG8421]
          Length = 719

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 4/138 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWI 59
           R  GR  N++R IS+   +   A GSCL   G T  L  ATL  E    M    T+   I
Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDSQMIDLLTEKNPI 395

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           +  + +     G  V   +     G R      +  RAL   VD +     +++   +++
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLV--SEIL 453

Query: 120 QADGGTRTAAITGAWVAL 137
           +++G +  A + G  +AL
Sbjct: 454 ESNGSSSMATVCGGSLAL 471


>gi|83595114|ref|YP_428866.1| polynucleotide phosphorylase/polyadenylase [Rhodospirillum rubrum
           ATCC 11170]
 gi|123766875|sp|Q2RMR6|PNP_RHORT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|83578028|gb|ABC24579.1| 3' exoribonuclease [Rhodospirillum rubrum ATCC 11170]
          Length = 708

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 94/239 (39%), Gaps = 38/239 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR    +R I +   +   A GS L   G+T  L T TL    +E++   +     
Sbjct: 314 LRIDGRDTKTVRPIEIYPGILPRAHGSALFTRGETQALVTTTLGTGQDEQIIDALEGEYR 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSR 110
                 Y   P S G        +GR G      +R IG      RA+  ++        
Sbjct: 374 ENFMLHYNFPPYSVGE-------AGRMGSPG---RREIGHGKLAWRAIHPMMPAKDAFPY 423

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
            + +  ++ +++G +  A + G  +AL D                 LK  VA I+ G++ 
Sbjct: 424 TVRVVSEITESNGSSSMATVCGTSLALMDA-------------GVPLKNAVAGIAMGLIK 470

Query: 171 G---YPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
               + ++ D+   ED   D+D     T +G I  +Q   +  + +++     LN AKD
Sbjct: 471 EDERFAVLSDILGDEDHLGDMDFKVAGTANG-ITSLQMDIKITSITKEIMNVALNQAKD 528


>gi|85373534|ref|YP_457596.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter litoralis
           HTCC2594]
 gi|123409685|sp|Q2NBZ2|PNP_ERYLH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|84786617|gb|ABC62799.1| polyribonucleotide nucleotidyltransferase [Erythrobacter litoralis
           HTCC2594]
          Length = 769

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 68/162 (41%), Gaps = 8/162 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR+ +++R I     +     GS L   G+T  + T TL     E++   +    + 
Sbjct: 320 RIDGRKTDEVRPIEAMVGLLPRTHGSALFTRGETQAICTTTLGTKDSEQMIDGLEGLSYS 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +    S R+ G      ++  RALR V+  +      I +  D
Sbjct: 380 NFMLHYNFPPYSVGEVGRFGFTSRRETGHG----KLAFRALRPVLPDNEEFPYTIRVLSD 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG 159
           + +++G +  A + G  +++ D    ++   +   +  +L+G
Sbjct: 436 ITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEG 477


>gi|86150580|ref|ZP_01068803.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|88596155|ref|ZP_01099392.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|218562865|ref|YP_002344644.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|123042773|sp|Q0P903|PNP_CAMJE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|85838931|gb|EAQ56197.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|88190996|gb|EAQ94968.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|112360571|emb|CAL35368.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|284926478|gb|ADC28830.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           subsp. jejuni IA3902]
 gi|315927122|gb|EFV06473.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315929391|gb|EFV08594.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 719

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 4/138 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWI 59
           R  GR  N++R IS+   +   A GSCL   G T  L  ATL  E    M    T+   I
Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDSQMIDLLTEKNPI 395

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           +  + +     G  V   +     G R      +  RAL   VD +     +++   +++
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLV--SEIL 453

Query: 120 QADGGTRTAAITGAWVAL 137
           +++G +  A + G  +AL
Sbjct: 454 ESNGSSSMATVCGGSLAL 471


>gi|322818634|gb|EFZ25985.1| ribosomal RNA processing protein 41A, putative [Trypanosoma cruzi]
          Length = 252

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 13/151 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN---TKHG 57
           +RL GR+  + R ++L        +G C V  G    L T       P  + N   +K+ 
Sbjct: 13  LRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSG----LATVCASVYGPREVTNRLESKYN 68

Query: 58  --WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
              IT E  +   +   R   +    R+   S+E+   +    RSVV LS   + QI I 
Sbjct: 69  ECIITCEVAIAAFAGEKRRAPQ----RRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHIC 124

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMED 146
            +V++ DG  + A I  A +AL D    M D
Sbjct: 125 VEVLRQDGSDKAACINAACLALVDASVAMRD 155


>gi|126726062|ref|ZP_01741904.1| polynucleotide phosphorylase/polyadenylase [Rhodobacterales
           bacterium HTCC2150]
 gi|126705266|gb|EBA04357.1| polynucleotide phosphorylase/polyadenylase [Rhodobacterales
           bacterium HTCC2150]
          Length = 710

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 95/233 (40%), Gaps = 27/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  + +R I     +     GS L   G+T  L   TL    +E++   +  T   
Sbjct: 318 RIDGRDTSTIRPIVSETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDALHGTYKS 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  V R   +GR   R     ++  RAL++V+  +      I +  +
Sbjct: 378 NFMLHYNFPPYSVG-EVGRFGFTGR---REIGHGKLAWRALQAVLPAATDFPYTIRLVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GYP 173
           + +++G +  A++ G  +A+ D                 LK  VA ++ G++      Y 
Sbjct: 434 ITESNGSSSMASVCGGSLAMMDA-------------GVPLKSAVAGVAMGLILEDDGSYA 480

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
           I+ D+   ED   D+D     T++G I  +Q   + A  + +     L  AKD
Sbjct: 481 ILSDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKIAGITPEIMEKALAQAKD 532


>gi|296285001|ref|ZP_06862999.1| polynucleotide phosphorylase/polyadenylase [Citromicrobium
           bathyomarinum JL354]
          Length = 769

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 18/227 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR+ +++R I     +     GS L   G+T  + T TL     E++   +    + 
Sbjct: 318 RIDGRKLDEVRPIEAIVGLLPRTHGSSLFTRGETQAICTTTLGTKDAEQMIDGLEGLSYN 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  V R   +GR   R     ++  RAL  V+         I +  D
Sbjct: 378 HFMLHYNFPPYSVGE-VGRFGFTGR---REIGHGKLAWRALHPVLPSHEDFPYTIRVLSD 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +++ D    +E   +   +  +L+G   A+         + D+
Sbjct: 434 ITESNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGDDFAV---------LSDI 484

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
              ED   D+D     ++SG I  +Q   + A  +Q+     L  AK
Sbjct: 485 LGDEDHLGDMDFKVAGSESG-ITSLQMDIKVAGITQEIMAKALEQAK 530


>gi|126740759|ref|ZP_01756444.1| polynucleotide phosphorylase/polyadenylase [Roseobacter sp.
           SK209-2-6]
 gi|126718055|gb|EBA14772.1| polynucleotide phosphorylase/polyadenylase [Roseobacter sp.
           SK209-2-6]
          Length = 705

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 98/240 (40%), Gaps = 41/240 (17%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR+ +++R+I     +     GS L   G+T  L   TL     E+ +     N K 
Sbjct: 310 RIDGRKTDEIRDIVSETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSR 110
            ++   Y   P S G         GR GG     +R IG      RAL++V+  +     
Sbjct: 370 NFLL-HYNFPPYSVGE-------VGRVGGPG---RREIGHGKLAWRALQAVLPAATDFPY 418

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
            I +  ++ +++G +  A++ G  +++ D                 LK  VA ++ G++ 
Sbjct: 419 TIRVVSEITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLIL 465

Query: 171 ----GYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                Y I+ D+   ED   D+D     T+ G I  +Q   + A  + +     L  AKD
Sbjct: 466 EDDGSYAILSDILGDEDHLGDMDFKVAGTEKG-ITSLQMDIKVAGITPEIMEKALAQAKD 524


>gi|55981108|ref|YP_144405.1| polynucleotide phosphorylase/polyadenylase [Thermus thermophilus
           HB8]
 gi|81364132|sp|Q5SJ75|PNP_THET8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|55772521|dbj|BAD70962.1| polynucleotide phosphorylase [Thermus thermophilus HB8]
          Length = 713

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 12/145 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKV--PMWIRNTK 55
           R  GR    +R I +   V   A GS +   G+T +L T TL    +E++   + I  T+
Sbjct: 327 RADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLGTGRDEQILDDLGIDETE 386

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
              +   Y   P STG   +   VS R+ G       +  RAL++V+         I + 
Sbjct: 387 KFLV--HYNFPPFSTGEVRRLRGVSRREVGHGN----LAKRALKAVMPKEEDFPYTIRVV 440

Query: 116 CDVIQADGGTRTAAITGAWVALHDC 140
            DV++++G +  A +    +AL D 
Sbjct: 441 GDVLESNGSSSMATVCAGCLALMDA 465


>gi|297566425|ref|YP_003685397.1| polyribonucleotide nucleotidyltransferase [Meiothermus silvanus DSM
           9946]
 gi|296850874|gb|ADH63889.1| polyribonucleotide nucleotidyltransferase [Meiothermus silvanus DSM
           9946]
          Length = 718

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 10/144 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R  GR   Q+R I +   V   A GS +   G+T +L   TL      + V     +T+ 
Sbjct: 329 RADGRTNTQVRPIWIEADVLPRAHGSAVFARGETQVLGVVTLGTGRDAQLVDDLGLDTED 388

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++   Y   P STG   +   VS R+ G       +  RALR+V+         I +  
Sbjct: 389 PFLV-HYNFPPYSTGEVKRLRGVSRREVGHGN----LAKRALRAVLPSQEEFPYTIRVVG 443

Query: 117 DVIQADGGTRTAAITGAWVALHDC 140
           DV++++G +  A      +AL D 
Sbjct: 444 DVLESNGSSSMATTCAGCLALMDA 467


>gi|260438015|ref|ZP_05791831.1| putative surface/cell-adhesion protein [Butyrivibrio crossotus DSM
           2876]
 gi|292809495|gb|EFF68700.1| putative surface/cell-adhesion protein [Butyrivibrio crossotus DSM
           2876]
          Length = 279

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 5/108 (4%)

Query: 99  RSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ--- 155
           R V DLS LG R+I    D    D    T  + GA V   D  +++ D   K  + +   
Sbjct: 135 RPVADLSKLGDREITFTSDAYAEDFSPITVPVEGAKVTW-DGKEYVTDADGKIVIDKADF 193

Query: 156 VLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ 203
            +  H   IS     G P+V L +  D  I V A+ V  ++  + E +
Sbjct: 194 TVGDHSVGISKVAEDGVPLV-LRFASDYKITVTADMVKAEAPAVTEPE 240


>gi|77457010|ref|YP_346515.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens
           Pf0-1]
 gi|123606003|sp|Q3KI80|PNP_PSEPF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|77381013|gb|ABA72526.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens
           Pf0-1]
          Length = 701

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 14/175 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++ +++  + +    I +
Sbjct: 376 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVSAMLPAADVFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M+       +  V +G   A+   +L
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDIL 483


>gi|254450859|ref|ZP_05064296.1| polyribonucleotide nucleotidyltransferase [Octadecabacter
           antarcticus 238]
 gi|198265265|gb|EDY89535.1| polyribonucleotide nucleotidyltransferase [Octadecabacter
           antarcticus 238]
          Length = 710

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 86/205 (41%), Gaps = 26/205 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR+ +++REI     +     GS L   G+T  L   TL    +E++   ++     
Sbjct: 318 RIDGRKTDEIREIVSETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDSLQGMYKS 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  V R    GR   R     ++  RAL++V+  +      I +  +
Sbjct: 378 NFLLHYNFPPYSVG-EVGRFGPPGR---REIGHGKLAWRALQAVLPAATDFPYTIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GYP 173
           + +++G +  A++ G  +++ D                 LK  VA ++ G++      Y 
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLIMEDSGEYA 480

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSG 197
           I+ D+   ED   D+D     T++G
Sbjct: 481 ILSDILGDEDHLGDMDFKVAGTENG 505


>gi|94264886|ref|ZP_01288660.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
           MLMS-1]
 gi|93454656|gb|EAT04924.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
           MLMS-1]
          Length = 703

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 98/239 (41%), Gaps = 19/239 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+  R+ +++R I+          GS L   G+T +L +ATL    +E+    +      
Sbjct: 322 RIDNRRLDEVRPITSEVAALPRVHGSALFTRGETQVLVSATLGSGDDEQRIESLSGMNFK 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G        S R  G       +  RA+++V+  +      I +  +
Sbjct: 382 PFMLHYNFPPYCVGEVRFLRGPSRRDIGHGA----LAERAIQAVLPDADSFPYTIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V++++G +  A + GA ++L D    M+   +   +  + +G   AI         + D+
Sbjct: 438 VLESNGSSSMATVCGASLSLMDAGVPMKKAVSGIAMGLIKEGEEVAI---------LSDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD-RIADLIKLQK 235
              ED   D+D     TD G I  +Q   +    S++     LN AKD R+  L K+Q+
Sbjct: 489 LGDEDHLGDMDFKVAGTDEG-ITALQMDIKVEGVSREIMTQALNQAKDARLHILEKMQQ 546


>gi|89056519|ref|YP_511970.1| polynucleotide phosphorylase/polyadenylase [Jannaschia sp. CCS1]
 gi|123094095|sp|Q28K17|PNP_JANSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|88866068|gb|ABD56945.1| Polyribonucleotide nucleotidyltransferase [Jannaschia sp. CCS1]
          Length = 706

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 98/235 (41%), Gaps = 33/235 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR  +++R+I    +V     GS L   G+T  L   TL     E+ +     N K 
Sbjct: 318 RIDGRALDEVRDIVSETKVLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377

Query: 57  GWITAEYGMLPRSTGN--RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
            ++   Y   P S G   RV      G  G R     ++  RAL++V+  +      + +
Sbjct: 378 NFLL-HYNFPPYSVGEAGRV------GPPGRREIGHGKLAWRALQAVLPAATDFPYTVRV 430

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---- 170
             ++ +++G +  A++ G  +++ D                 LK  VA ++ G++     
Sbjct: 431 VSEITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLVLEDDG 477

Query: 171 GYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
            Y I+ D+   ED   D+D     T++G I  +Q   + A  +Q+     L  AK
Sbjct: 478 SYGILTDILGDEDHLGDMDFKVAGTEAG-ITSLQMDIKVAGITQEIMEKALEQAK 531


>gi|325189047|emb|CCA23575.1| exosome complex exonuclease RRP41like protein putati [Albugo
           laibachii Nc14]
          Length = 261

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 11/147 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNT----- 54
           +RL GR+E + R +     V   A+GS  ++ G+T +L       +V    ++N      
Sbjct: 18  LRLDGRREAETRRVRARLGVFHRADGSAYIEQGNTKVLVVVYGPREVDGTTLKNAKGAAS 77

Query: 55  --KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
             K   +  E      +T +R      S R   ++ E+   I +   S +  +     QI
Sbjct: 78  LVKKAIVHCECTQASFATSDRKVSRNASDR---KNVEMSSAIKQIFESCIFTNLYPQSQI 134

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHD 139
            I   V+QADGG   A+I    +AL D
Sbjct: 135 SIYPQVLQADGGELAASINATSLALMD 161


>gi|254510470|ref|ZP_05122537.1| 3' exoribonuclease family, domain 2, protein [Rhodobacteraceae
           bacterium KLH11]
 gi|221534181|gb|EEE37169.1| 3' exoribonuclease family, domain 2, protein [Rhodobacteraceae
           bacterium KLH11]
          Length = 716

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 95/240 (39%), Gaps = 41/240 (17%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R I     +     GS L   G+T  L   TL     E+ +     N K 
Sbjct: 318 RIDGRSTTDIRSIVAETSMLPRTHGSALFTRGETQALAVTTLGTGDDEQFIDALHGNFKS 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSR 110
            ++   Y   P S G         GR GG     +R IG      RAL++V+  +     
Sbjct: 378 NFLL-HYNFPPYSVGE-------VGRVGGPG---RREIGHGKLAWRALQAVLPAATDFPY 426

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
            I I  ++ +++G +  A++ G  +++ D                 LK  VA ++ G++ 
Sbjct: 427 TIRIVSEITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLIL 473

Query: 171 ----GYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                Y I+ D+   ED   D+D     T++G I  +Q   + A  + +     L  AKD
Sbjct: 474 EDDGNYAILSDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKALAQAKD 532


>gi|189424733|ref|YP_001951910.1| polynucleotide phosphorylase/polyadenylase [Geobacter lovleyi SZ]
 gi|257096692|sp|B3EAF2|PNP_GEOLS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189420992|gb|ACD95390.1| Polyribonucleotide nucleotidyltransferase [Geobacter lovleyi SZ]
          Length = 703

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 10/145 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
           +R+ GR    +R I++   +   A GS L   G+T +L  ATL     E+++       +
Sbjct: 314 IRIDGRDTKTVRPIAIEAGLLPRAHGSTLFTRGETQVLAAATLGTSQDEQRMDSLYGEYR 373

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P S G    R A   R+ G     +R I   L +  D        I I 
Sbjct: 374 KKFML-HYNFPPFSVGETSFRLAPGRREIGHGMLAERAISAILPNHDDF----PYTIRIV 428

Query: 116 CDVIQADGGTRTAAITGAWVALHDC 140
            + ++++G +  A + G  ++L D 
Sbjct: 429 AETLESNGSSSMATVCGGCLSLMDA 453


>gi|94269020|ref|ZP_01291349.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
           MLMS-1]
 gi|93451373|gb|EAT02233.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
           MLMS-1]
          Length = 703

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 98/239 (41%), Gaps = 19/239 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+  R+ +++R I+          GS L   G+T +L +ATL    +E+    +      
Sbjct: 322 RIDNRRLDEVRPITSEVAALPRVHGSALFTRGETQVLVSATLGSGDDEQRIESLSGMNFK 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G        S R  G       +  RA+++V+  +      I +  +
Sbjct: 382 PFMLHYNFPPYCVGEVRFLRGPSRRDIGHGA----LAERAIQAVLPDADSFPYTIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V++++G +  A + GA ++L D    M+   +   +  + +G   AI         + D+
Sbjct: 438 VLESNGSSSMATVCGASLSLMDAGVPMKKAVSGIAMGLIKEGEEVAI---------LSDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD-RIADLIKLQK 235
              ED   D+D     TD G I  +Q   +    S++     LN AKD R+  L K+Q+
Sbjct: 489 LGDEDHLGDMDFKVAGTDEG-ITALQMDIKVEGVSREIMTQALNQAKDARLHILEKMQQ 546


>gi|213423108|ref|ZP_03356125.1| hypothetical protein Salmonentericaenterica_37027 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 34

 Score = 37.0 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           D N VMT+ G I+EVQG+AE   FS +    +L
Sbjct: 2   DMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLL 34


>gi|283954815|ref|ZP_06372331.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283793655|gb|EFC32408.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 713

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 4/138 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWI 59
           R  GR  N++R IS+   +   A GSCL   G T  L  ATL  E    M    T+   I
Sbjct: 355 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 414

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              + +     G  V   +     G R      +  RAL   VD +     +++   +++
Sbjct: 415 NERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLV--SEIL 472

Query: 120 QADGGTRTAAITGAWVAL 137
           +++G +  A + G  +AL
Sbjct: 473 ESNGSSSMATVCGGSLAL 490


>gi|300025003|ref|YP_003757614.1| polyribonucleotide nucleotidyltransferase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526824|gb|ADJ25293.1| polyribonucleotide nucleotidyltransferase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 733

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 66/173 (38%), Gaps = 21/173 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           MR+ GR    +R I     V     GS L   G+T  L  ATL    +E+    +  TK 
Sbjct: 314 MRIDGRDLKTVRPILSEVHVLPRTHGSALFTRGETQALVVATLGTGEDEQFIDSLEGTKK 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  +   R+ G  +   R I   L S  D        + +  
Sbjct: 374 ERFLLHYNFPPYSVGEVGRMGSPGRREIGHGKLAWRAIHPMLPSQEDF----PYTLRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           ++ +++G +  A + G+ +AL D                 LK  VA I+ G++
Sbjct: 430 EITESNGSSSMATVCGSSLALMDA-------------GVPLKSPVAGIAMGLI 469


>gi|20807834|ref|NP_623005.1| polynucleotide phosphorylase/polyadenylase [Thermoanaerobacter
           tengcongensis MB4]
 gi|81481549|sp|Q8RA43|PNP_THETN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|20516395|gb|AAM24609.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Thermoanaerobacter tengcongensis MB4]
          Length = 707

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 29/148 (19%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           M L+GR     + +  T +V++ A G+  VK+GDT +L TA          +  + G   
Sbjct: 8   MELAGR-----KLVVQTGKVAQQANGAAWVKYGDTVVLVTACAS-------KEPREGIDF 55

Query: 58  -WITAEY-------GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS 109
             +T EY       G +P   G  +KRE   G+   ++    R+I R +R +        
Sbjct: 56  FPLTVEYEERLYSIGKIP---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPEGYRND 109

Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVAL 137
            Q+I     +  D      A+ G+ VAL
Sbjct: 110 VQVIATVLSVDPDAQPEIVAMIGSSVAL 137


>gi|303326248|ref|ZP_07356691.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp.
           3_1_syn3]
 gi|302864164|gb|EFL87095.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp.
           3_1_syn3]
          Length = 747

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 9/143 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I +   V   A GS L + G+T  L  ATL         ++  G +T 
Sbjct: 324 RIDGRDTKSVRPIQIQTGVLPRAHGSALFRRGETKSLVIATLGSSTDEQRMDSLTGDVTK 383

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G  VK   VS R+ G       +  ++LR ++   A     + +  +
Sbjct: 384 RFMLHYNFPPYCVGE-VKPVRVSRREIGHGA----LAEKSLRPILPADADFPFTLRVVAE 438

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
            ++++G +  AA+ G  ++L D 
Sbjct: 439 TMESNGSSSMAAVCGGSLSLMDA 461


>gi|260655007|ref|ZP_05860495.1| polyribonucleotide nucleotidyltransferase [Jonquetella anthropi
           E3_33 E1]
 gi|260630322|gb|EEX48516.1| polyribonucleotide nucleotidyltransferase [Jonquetella anthropi
           E3_33 E1]
          Length = 756

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 68/175 (38%), Gaps = 23/175 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL------EEKVPMWIRNT 54
           +R  GR  +Q+R IS    +     GS L   G+T  L TATL      ++ +     N 
Sbjct: 311 VRADGRATDQIRPISCEIGLLPRVHGSALFTRGETMSLATATLGMLGEDDQMMDGLKHNE 370

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
            +      Y   P S G          R+ G     +R +   + S  D   +    + +
Sbjct: 371 PNKRFLLHYNFPPFSVGEVRPMRGPGRREIGHGALAERALAPIIPSEEDFPYV----VRV 426

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             D+++++G +  A+I G  +AL                   +K HVA I+ G++
Sbjct: 427 VSDILESNGSSSQASICGGSLAL-------------MAAGVPVKCHVAGIAMGLI 468


>gi|146337231|ref|YP_001202279.1| polynucleotide phosphorylase/polyadenylase [Bradyrhizobium sp.
           ORS278]
 gi|187470941|sp|A4YJF3|PNP_BRASO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146190037|emb|CAL74029.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Bradyrhizobium sp. ORS278]
          Length = 719

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 80/203 (39%), Gaps = 23/203 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I     V   A GS L   G+T  L   TL    +E+    +  T   
Sbjct: 316 RIDGRDAKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDALSGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G        +GR GG + +EI   ++  RA+  V+           +
Sbjct: 376 TFLLHYNFPPYSVGE-------TGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTTRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             +V +++G +  A + G+ +AL D    ++  +    +  +L+G   A+   +L     
Sbjct: 429 VSEVTESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRFAVLSDILG---- 484

Query: 175 VDLDYGEDSTIDVDANFVMTDSG 197
                 ED   D+D     T+SG
Sbjct: 485 -----DEDHLGDMDFKVAGTESG 502


>gi|289676030|ref|ZP_06496920.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. syringae FF5]
          Length = 472

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 87  RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 146

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++++++  + +    I +
Sbjct: 147 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 199

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M+       +  V +G   AI   +L
Sbjct: 200 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDIL 254


>gi|16078732|ref|NP_389551.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221309547|ref|ZP_03591394.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221313871|ref|ZP_03595676.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221318794|ref|ZP_03600088.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221323066|ref|ZP_03604360.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|321315436|ref|YP_004207723.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis BSn5]
 gi|1709698|sp|P50849|PNP_BACSU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase;
           AltName: Full=Vegetative protein 15; Short=VEG15
 gi|1184680|gb|AAC43595.1| polynucleotide phosphorylase [Bacillus subtilis]
 gi|2634041|emb|CAB13542.1| polynucleotide phosphorylase (PNPase) [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291484223|dbj|BAI85298.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. natto BEST195]
 gi|320021710|gb|ADV96696.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis BSn5]
 gi|1589234|prf||2210369A polynucleotide phosphorylase
          Length = 705

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 9/124 (7%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWITAEY--GMLPRSTGNR 73
           T +++K A G+ ++++GDT +L+TAT  +E  P+        +    Y  G +P   G  
Sbjct: 21  TGQLAKQANGAVMIRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP---GGF 77

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
           +KRE   GR   ++    R+I R +R +         Q+I     +  +  +  AA+ G+
Sbjct: 78  IKRE---GRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEMAAMFGS 134

Query: 134 WVAL 137
            +AL
Sbjct: 135 SLAL 138


>gi|218290095|ref|ZP_03494257.1| Polyribonucleotide nucleotidyltransferase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239804|gb|EED06993.1| Polyribonucleotide nucleotidyltransferase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 735

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 8/144 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ +++R IS    +     GS L   G T  L+  TL    +E++   +   K 
Sbjct: 310 IRPDGRRLDEIRPISCEVGLLPRTHGSALFTRGQTQALSVCTLGSMGDEQLLDGLELEKS 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      A S R  G       +  RAL  V+         I +  
Sbjct: 370 NRYMHHYNFPPFSVGEAKPLRAPSRRDIGHGA----LGERALDPVIPSPEEFPYAIRVVS 425

Query: 117 DVIQADGGTRTAAITGAWVALHDC 140
           ++++++G T  A+I G+ +AL D 
Sbjct: 426 EILESNGSTSQASICGSTMALMDA 449


>gi|160872287|ref|ZP_02062419.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Rickettsiella
           grylli]
 gi|159121086|gb|EDP46424.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Rickettsiella
           grylli]
          Length = 712

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR +  +R I++         GS L   G+T  L   TL    + +    +      
Sbjct: 325 RIDGRDKKAVRPITIEPGFLPRTHGSALFTRGETQALVVTTLGTDRDAQTVEALDGEGRE 384

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RALR+V+   +     + +  +
Sbjct: 385 TFMLHYNFPPYSVGETGQIGSPKRREIGHGN----LAKRALRAVLPSESDFPYVLRVVSE 440

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A + GA VAL D                 LK HVA I+ G++
Sbjct: 441 ITESNGSSSMATVCGASVALMDA-------------GVPLKKHVAGIAMGLI 479


>gi|270294853|ref|ZP_06201054.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D20]
 gi|270274100|gb|EFA19961.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D20]
          Length = 714

 Score = 36.6 bits (83), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 10/143 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGW- 58
           RL GR+  ++R I           GS +   G+T  L+T TL  K+   I +   +HG  
Sbjct: 319 RLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  + ++     +++   D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPVNYPYVVRVV--SD 432

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           +++++G +  A +    +AL D 
Sbjct: 433 ILESNGSSSMATVCAGTLALMDA 455


>gi|163784067|ref|ZP_02179020.1| polynucleotide phosphorylase/polyadenylase [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159880666|gb|EDP74217.1| polynucleotide phosphorylase/polyadenylase [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 708

 Score = 36.6 bits (83), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 94/245 (38%), Gaps = 51/245 (20%)

Query: 12  REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEY 63
           +EIS+ T   +K A G+ +VK G+T +   A +  +       +P+ +   +    T  Y
Sbjct: 18  KEISIETGYFAKQANGAVIVKSGETEVFVAAVVSSEAQPDIDFLPLTVEYREK---TYAY 74

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD- 122
           G +P   G  VKRE   G+   R   + R+I R +R +          +II    + AD 
Sbjct: 75  GKIP---GGFVKRE---GKPSNREILVSRLIDRPIRPL--FPKGFHNDVIITAMTLSADD 126

Query: 123 -GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
                  AITG   AL       E             G +A +    + G  I +  Y E
Sbjct: 127 KNDPDVLAITGVSAALMISEAPFE-------------GPIAGVRVARVDGKFIANPTYEE 173

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232
               D+D     T    IV V+G +E            F+ +H   +++         I+
Sbjct: 174 RDKSDMDIVVAGTKDA-IVMVEGGSEEVPEEEILEAIMFAHEHIKQLIDFQ-------IE 225

Query: 233 LQKDV 237
           LQK V
Sbjct: 226 LQKKV 230


>gi|258511422|ref|YP_003184856.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478148|gb|ACV58467.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 735

 Score = 36.6 bits (83), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 8/144 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ +++R IS    +     GS L   G T  L+  TL    +E++   +   K 
Sbjct: 310 IRPDGRRLDEIRPISCEVGLLPRTHGSALFTRGQTQALSVCTLGSMGDEQLLDGLELEKS 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      A S R  G       +  RAL  V+         I +  
Sbjct: 370 NRYMHHYNFPPFSVGEAKPLRAPSRRDIGHGA----LGERALDPVIPSPEEFPYAIRVVS 425

Query: 117 DVIQADGGTRTAAITGAWVALHDC 140
           ++++++G T  A+I G+ +AL D 
Sbjct: 426 EILESNGSTSQASICGSTMALMDA 449


>gi|302834702|ref|XP_002948913.1| hypothetical protein VOLCADRAFT_89262 [Volvox carteri f.
           nagariensis]
 gi|300265658|gb|EFJ49848.1| hypothetical protein VOLCADRAFT_89262 [Volvox carteri f.
           nagariensis]
          Length = 238

 Score = 36.6 bits (83), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 19/161 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   + R + +  RV   A+GS  V+FG T ++       +  + +  T  G +  
Sbjct: 13  RADGRGLEEFRTVFIKTRVLSQAKGSAYVEFGTTKVMVGVFGPRQSEVKLGFTDTGRLNC 72

Query: 62  EYGM-------LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           E  +       L +S   +++  A  G Q      +Q  + +  ++V D+SA+       
Sbjct: 73  EVRLTSFASHKLAKSGQTQLESSAAQGLQQALEPSVQ--LDKFPKAVFDVSAM------- 123

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ 155
              +++A G      IT A VAL D    + D     Q+S+
Sbjct: 124 ---ILEAGGSDLAVLITAASVALADAGVELYDLVPAVQVSK 161


>gi|197106893|ref|YP_002132270.1| polyribonucleotide nucleotidyltransferase [Phenylobacterium
           zucineum HLK1]
 gi|226702673|sp|B4RC48|PNP_PHEZH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|196480313|gb|ACG79841.1| polyribonucleotide nucleotidyltransferase [Phenylobacterium
           zucineum HLK1]
          Length = 715

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 96/243 (39%), Gaps = 38/243 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  +Q+R I     V   A GS L   G+T  L   TL    +E++   +      
Sbjct: 317 RIDGRTVDQVRPILGEVGVLPRAHGSALFTRGETQALCVTTLGTGDDEQLIDALEGKYFE 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      ++  RALR ++         I I  +
Sbjct: 377 KFMLHYNFPPFSVGETGRMGSPGRREVGHG----KLAWRALRPMLPSYEEFPYTIRIVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GYPI 174
           + +++G +  A + G+ +AL D                 LK  V+ I+ G++    G+ +
Sbjct: 433 IFESNGSSSMATVCGSSLALMDA-------------GVPLKKPVSGIAMGLILEKDGFAV 479

Query: 175 V-DLDYGEDSTIDVDANFVMTDSG-----------HIVE--VQGSAERATFSQDHFFAML 220
           + D+   ED   D+D     T  G            I E  ++ + E+A   +DH  A +
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKKALEQAKGGRDHILAEM 539

Query: 221 NLA 223
           N A
Sbjct: 540 NKA 542


>gi|291279901|ref|YP_003496736.1| polyribonucleotide nucleotidyltransferase [Deferribacter
           desulfuricans SSM1]
 gi|290754603|dbj|BAI80980.1| polyribonucleotide nucleotidyltransferase [Deferribacter
           desulfuricans SSM1]
          Length = 700

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 26/205 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR   ++R I +   +   A GS L   G+T  L TATL  K    + +   G    
Sbjct: 321 RVDGRTYTEIRPIDIEVDLLPCAHGSALFTRGETQALVTATLGTKFDSQLLDDLEGETYK 380

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      A   R+ G       +  RAL S++         I +  +
Sbjct: 381 RFMLHYNFPPFSVGEIGFLRAPGRREIGHG----FLAERALASMLPGEDEFPYTIRVVSE 436

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GYP 173
           +++++G +  A + G  +AL D    ++D              VA I+ G++      Y 
Sbjct: 437 ILESNGSSSMATVCGGSLALMDAGVPIKDV-------------VAGIAMGLIYEGDDNYV 483

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSG 197
           I+ D+   ED   D+D     T++G
Sbjct: 484 ILSDIMGIEDHLGDMDFKVTGTETG 508


>gi|254437652|ref|ZP_05051146.1| 3' exoribonuclease family, domain 2 [Octadecabacter antarcticus
           307]
 gi|198253098|gb|EDY77412.1| 3' exoribonuclease family, domain 2 [Octadecabacter antarcticus
           307]
          Length = 710

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 26/205 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR+ +++R+I     +     GS L   G+T  L   TL    +E++   +      
Sbjct: 318 RIDGRKTDEIRDIVSETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDSLSGMYKS 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  V R   +GR   R     ++  RAL++V+  +      I +  +
Sbjct: 378 NFMLHYNFPPYSVG-EVGRFGFTGR---REIGHGKLAWRALQAVLPAATDFPYTIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GYP 173
           + +++G +  A++ G  +++ D                 LK  VA ++ G++      Y 
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLIMQDDGSYA 480

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSG 197
           I+ D+   ED   D+D     T++G
Sbjct: 481 ILSDILGDEDHLGDMDFKVAGTEAG 505


>gi|83945015|ref|ZP_00957381.1| polyribonucleotide nucleotidyltransferase [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851797|gb|EAP89652.1| polyribonucleotide nucleotidyltransferase [Oceanicaulis alexandrii
           HTCC2633]
          Length = 709

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 8/143 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  +Q+R I     V     GS L   G+T  L   TL    +E+    +  T   
Sbjct: 317 RIDGRSLDQVRPIVSEATVLPRTHGSALFTRGETQALAVVTLGTGEDEQFIDALTGTYKE 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R A   R+ G      ++  RAL +V+  +      + +  +
Sbjct: 377 RFLLHYNFPPYSVGETSFRLAPGRREIGHG----KLAWRALNAVMPNAETFPYTVRLVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           + +++G +  A + G  +AL D 
Sbjct: 433 ITESNGSSSMATVCGGSLALMDA 455


>gi|313673255|ref|YP_004051366.1| polyribonucleotide nucleotidyltransferase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940011|gb|ADR19203.1| polyribonucleotide nucleotidyltransferase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 706

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 78/184 (42%), Gaps = 9/184 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           +R+ GR+ +++R I +   +   A GS L   G+T  L + TL  K+   + +   G   
Sbjct: 320 IRVDGRRYDEIRPIDIEVGLLPRAHGSALFTRGETQALVSTTLGTKMDSQLVDDIEGNSS 379

Query: 58  -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  A   R+ G       +  RAL  V+   +     I +  
Sbjct: 380 KRFMLHYNFPPFSVGEVGRMGAPGRREVGHGA----LAERALSFVIPDESDFPYTIRVVS 435

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIV 175
           ++++++G +  A + G  ++L D    ++D      +  +  KG  A +S  M     + 
Sbjct: 436 EILESNGSSSMATVCGGCLSLMDAGVPVKDMVAGIAMGLIYEKGRYAILSDIMGIEDHLG 495

Query: 176 DLDY 179
           D+D+
Sbjct: 496 DMDF 499


>gi|83644105|ref|YP_432540.1| polynucleotide phosphorylase/polyadenylase [Hahella chejuensis KCTC
           2396]
 gi|123726449|sp|Q2SMK9|PNP_HAHCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|83632148|gb|ABC28115.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Hahella chejuensis KCTC 2396]
          Length = 703

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVP---MWIRNTKHGWITAEYGMLPRSTGN 72
           T R+++ A G+ LV   DT +L TA  E E VP    +  +  +   T   G +P   G 
Sbjct: 19  TGRIARQATGAVLVTMDDTVVLVTAVAEKEAVPGRDFFPLSVHYQEKTYAAGRIP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
             KRE   GR   +     R+I R +R +     +   QII  C V+ A+
Sbjct: 76  YFKRE---GRPSEKETLTSRLIDRPIRPLFPDGFMNEVQII--CTVMSAN 120


>gi|291613953|ref|YP_003524110.1| polyribonucleotide nucleotidyltransferase [Sideroxydans
           lithotrophicus ES-1]
 gi|291584065|gb|ADE11723.1| polyribonucleotide nucleotidyltransferase [Sideroxydans
           lithotrophicus ES-1]
          Length = 709

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 27/175 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I++   V     GS L   G+T  L  ATL    + +    ++     
Sbjct: 320 RIDGRDTRTVRPITIRTGVLPRTHGSVLFTRGETQALVVATLGSMRDSQTIDALQGEYSD 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P STG        +GR G  + +EI   R+  RAL +V+         I +
Sbjct: 380 RFMLHYNFPPYSTGE-------TGRVGTPKRREIGHGRLAKRALVAVLPSEEECGYAIRV 432

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ G  ++L D                 +K HVA I+ G++
Sbjct: 433 VSEITESNGSSSMASVCGGCLSLMDA-------------GVPVKTHVAGIAMGLI 474


>gi|302878493|ref|YP_003847057.1| polyribonucleotide nucleotidyltransferase [Gallionella
           capsiferriformans ES-2]
 gi|302581282|gb|ADL55293.1| polyribonucleotide nucleotidyltransferase [Gallionella
           capsiferriformans ES-2]
          Length = 701

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 27/175 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R+I++   V     GS L   G+T  +  ATL         +   G  T 
Sbjct: 311 RIDGRDTRTVRQITIRNGVLARTHGSALFTRGETQAVVVATLGSMRDAQKVDALQGEFTD 370

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P +TG        +GR G  + +EI   R+  RAL +V+         + I
Sbjct: 371 RFMLHYNFPPFATGE-------TGRVGSPKRREIGHGRLAKRALVAVLPSEEDFGYAVRI 423

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ G  +++ D                 LK HVA I+ G++
Sbjct: 424 VSEITESNGSSSMASVCGGCLSMLDA-------------GVPLKAHVAGIAMGLI 465


>gi|224146058|ref|XP_002325864.1| predicted protein [Populus trichocarpa]
 gi|222862739|gb|EEF00246.1| predicted protein [Populus trichocarpa]
          Length = 730

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 82/211 (38%), Gaps = 32/211 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKH 56
           R  GR  +++R I     +   A GS L   G+T  L   TL +K     V   +   + 
Sbjct: 380 RSDGRTPDRIRPIDSRCGILPRAHGSALFTRGETQSLAVVTLGDKQMAQRVDNLVDEEEF 439

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P   G   +  A S R+ G    ++R +   L S  D        + ++ 
Sbjct: 440 KRFYLQYLFPPSCVGEVGRIGAPSRREIGHGMLVERALKPILPSDDDF----PYTVRVES 495

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------ 170
            + +++G +  A++ G  +AL D                 +K  +A I+ GM+       
Sbjct: 496 TITESNGSSSMASVCGGCLALQDA-------------GVPVKCMIAGIAMGMVLDTEEFG 542

Query: 171 --GYPIV--DLDYGEDSTIDVDANFVMTDSG 197
             G P++  D+   ED++ D+D      + G
Sbjct: 543 GDGTPLILSDITGSEDASGDMDFKVAGNEDG 573


>gi|149185848|ref|ZP_01864163.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter sp.
           SD-21]
 gi|148830409|gb|EDL48845.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter sp.
           SD-21]
          Length = 763

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 70/172 (40%), Gaps = 8/172 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR+ +Q+R I     +     GS L   G+T  + T TL     E++   +    + 
Sbjct: 316 RIDGRKLDQVRPIEAMVGLLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGLEGLSYN 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +    S R+ G      ++  RAL  V+         I I  D
Sbjct: 376 NFMLHYNFPPYSVGEVGRFGFTSRRETGHG----KLAWRALHPVLPDHEDFPYTIRILSD 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A + G  +++ D    +E   +   +  +L+G   A+   +L
Sbjct: 432 ITESNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGEDFAVLSDIL 483


>gi|315932402|gb|EFV11345.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 720

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 4/138 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWI 59
           R  GR  N++R IS+   +   A GSCL   G T  L  ATL  E    M    T+   I
Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           +  + +     G  V   +     G R      +  RAL   +D +     +++   +++
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSLDENYPYVIRLV--SEIL 453

Query: 120 QADGGTRTAAITGAWVAL 137
           +++G +  A + G  +AL
Sbjct: 454 ESNGSSSMATVCGGSLAL 471


>gi|260425775|ref|ZP_05779755.1| polyribonucleotide nucleotidyltransferase [Citreicella sp. SE45]
 gi|260423715|gb|EEX16965.1| polyribonucleotide nucleotidyltransferase [Citreicella sp. SE45]
          Length = 716

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 26/205 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R I     V     GS L   G+T  L   TL       I +  HG   +
Sbjct: 318 RIDGRALDQVRPIVSETSVLPRTHGSSLFTRGETQALVVTTLGTGDDEQIIDALHGNFRS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  V R    GR   R     ++  RAL++V+         I +  +
Sbjct: 378 NFLLHYNFPPYSVG-EVGRVGSPGR---REIGHGKLAWRALQAVLPAPTDFPYTIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GYP 173
           + +++G +  A++ G  +++ D                 LK  VA ++ G++      Y 
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLVLEDGGEYA 480

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSG 197
           ++ D+   ED   D+D     T++G
Sbjct: 481 VLTDILGDEDHLGDMDFKVAGTENG 505


>gi|114571589|ref|YP_758269.1| polynucleotide phosphorylase/polyadenylase [Maricaulis maris MCS10]
 gi|122314882|sp|Q0AK62|PNP_MARMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|114342051|gb|ABI67331.1| Polyribonucleotide nucleotidyltransferase [Maricaulis maris MCS10]
          Length = 710

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 8/143 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  +Q+R I     +     GS L   G+T  L  ATL    +E+    +  T   
Sbjct: 317 RIDGRSLDQVRSIVSEAGILPRTHGSALFTRGETQALVVATLGTGEDEQFIDALTGTYKE 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R A   R+ G      ++  RA+++V+         I +  +
Sbjct: 377 RFMLHYNFPPYSVGETSFRLAPGRREIGHG----KLAWRAVKAVLPTKEDFPYTIRLVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           + +++G +  A + GA +++ D 
Sbjct: 433 ITESNGSSSMATVCGASLSMMDA 455


>gi|91789120|ref|YP_550072.1| polynucleotide phosphorylase/polyadenylase [Polaromonas sp. JS666]
 gi|123355467|sp|Q127W8|PNP_POLSJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|91698345|gb|ABE45174.1| Polyribonucleotide nucleotidyltransferase [Polaromonas sp. JS666]
          Length = 707

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 27/175 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGW-- 58
           R+ GR    +R I +   V     GS L   G+T  L   TL  E+    I      +  
Sbjct: 317 RIDGRDTRTVRAIEIRNSVLPRTHGSALFTRGETQALVVTTLGTERDAQRIDALSGDYED 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL +V+         + +
Sbjct: 377 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIAVLPTKEEFPYTMRV 429

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ G  ++L D    M             K HVA I+ G++
Sbjct: 430 VSEITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLI 471


>gi|283956649|ref|ZP_06374128.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|283791898|gb|EFC30688.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 1336]
          Length = 719

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 4/138 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWI 59
           R  GR  N++R IS+   +   A GSCL   G T  L  ATL  E    M    T+   I
Sbjct: 336 RADGRSLNEVRPISIETNLLPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           +  + +     G  V   +     G R      +  RAL   +D +     +++   +++
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSIDENYPYVIRLV--SEIL 453

Query: 120 QADGGTRTAAITGAWVAL 137
           +++G +  A + G  +AL
Sbjct: 454 ESNGSSSMATVCGGSLAL 471


>gi|89900282|ref|YP_522753.1| polynucleotide phosphorylase/polyadenylase [Rhodoferax
           ferrireducens T118]
 gi|122479529|sp|Q21YD1|PNP_RHOFD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|89345019|gb|ABD69222.1| 3' exoribonuclease [Rhodoferax ferrireducens T118]
          Length = 706

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 27/175 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGW-- 58
           R+ GR    +R I +   V     GS L   G+T  L   TL  E+    I      +  
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVTTLGTERDAQRIDALSGDYED 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQG-GRSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL +V+         + +
Sbjct: 377 RFMLHYNMPPFATGE-------TGRVGTPKRREIGHGRLAKRALMAVLPSKEEFPYTMRV 429

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ G  ++L D    M             K HVA I+ G++
Sbjct: 430 VSEITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLI 471


>gi|213018630|ref|ZP_03334438.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
 gi|212995581|gb|EEB56221.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
          Length = 758

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 73/175 (41%), Gaps = 25/175 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+  R+ +++R+I +   +     GS L   G T  L    L    +E++   I   + 
Sbjct: 310 VRIDSRKYDEIRQIEIEADILPKTHGSALFTRGSTQALVVTALGTTQDEQIVDDIEGDRR 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                 Y   P + G     EA + R  GR +EI   ++  +A+  V+   +     I +
Sbjct: 370 EHFMLHYNFPPFAVG-----EASAIRAPGR-REIGHGKLAWKAIHPVLPDKSEFPYTIRV 423

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             +++++DG +  A + G  +AL D                 +K  VA I+ G++
Sbjct: 424 VSEIMESDGSSSMATVCGTSIALMDT-------------GVPIKAPVAGIAMGLI 465


>gi|330504823|ref|YP_004381692.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina
           NK-01]
 gi|328919109|gb|AEB59940.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina
           NK-01]
          Length = 701

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 8/172 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRGLNIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G  +  +R +   L S  +        I +  +
Sbjct: 376 PFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPSADEF----PYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A++ GA +AL D    M+       +  VL+G   A+   +L
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGDKFAVLTDIL 483


>gi|86139387|ref|ZP_01057956.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. MED193]
 gi|85823890|gb|EAQ44096.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. MED193]
          Length = 702

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 87/212 (41%), Gaps = 40/212 (18%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR  +++R+I     +     GS L   G+T  L   TL     E+ +     N K 
Sbjct: 310 RIDGRATDEIRDIVSETGMLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSR 110
            ++   Y   P S G         GR GG     +R IG      RAL++V+  +     
Sbjct: 370 NFLL-HYNFPPYSVGE-------VGRVGGPG---RREIGHGKLAWRALQAVLPAATDFPY 418

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
            I +  ++ +++G +  A++ G  +++ D                 LK  VA ++ G++ 
Sbjct: 419 TIRVVSEITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLIL 465

Query: 171 ----GYPIV-DLDYGEDSTIDVDANFVMTDSG 197
                Y I+ D+   ED   D+D     T++G
Sbjct: 466 EDDGSYAILSDILGDEDHLGDMDFKVAGTEAG 497


>gi|311030081|ref|ZP_07708171.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. m3-13]
          Length = 715

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 9/122 (7%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           +++K A G+ +V++GDT +L+TAT     +K+  +     +       G +P   G  +K
Sbjct: 33  QLAKQANGAVMVRYGDTAVLSTATASKEPKKLDFFPLTVNYEERLYAVGKIP---GGFIK 89

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE   GR   ++    R+I R +R +         Q+I     +  +  +  AA+ G+ +
Sbjct: 90  RE---GRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEMAAMFGSSL 146

Query: 136 AL 137
           AL
Sbjct: 147 AL 148


>gi|27375890|ref|NP_767419.1| polynucleotide phosphorylase/polyadenylase [Bradyrhizobium
           japonicum USDA 110]
 gi|81740094|sp|Q89WB3|PNP_BRAJA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|27349028|dbj|BAC46044.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium japonicum
           USDA 110]
          Length = 720

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 81/203 (39%), Gaps = 23/203 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I     V   A GS L   G+T  +   TL    +E+    +  T   
Sbjct: 316 RIDGRDSKTVRNIIAEVGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDALSGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G        +GR GG + +EI   ++  RA+  V+         I +
Sbjct: 376 TFLLHYNFPPYSVGE-------TGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTIRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++ +++G +  A++ GA +AL D    ++  +    +  +L+    A+   +L     
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEDKRFAVLSDILG---- 484

Query: 175 VDLDYGEDSTIDVDANFVMTDSG 197
                 ED   D+D     T+SG
Sbjct: 485 -----DEDHLGDMDFKVAGTESG 502


>gi|302788516|ref|XP_002976027.1| hypothetical protein SELMODRAFT_104548 [Selaginella moellendorffii]
 gi|300156303|gb|EFJ22932.1| hypothetical protein SELMODRAFT_104548 [Selaginella moellendorffii]
          Length = 705

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 39/193 (20%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
           +R+ GR    +R++     +     GS L   G+T +L T TL      +K+   +   K
Sbjct: 315 IRVDGRSLTDVRDLYCEAGIYPALHGSSLFSRGNTQVLCTVTLGAPEDAQKLDSIVGPPK 374

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ---- 111
             ++   Y   P S  N V      G+ GG +   +R +G    +   L AL   +    
Sbjct: 375 KRFMV-HYSFPPFSV-NEV------GKVGGLN---RREVGHGTLAEKALVALLPPEDENF 423

Query: 112 ---IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
              + ++ +V+ +DG +  A + G  +AL D                 LK HVA IS G+
Sbjct: 424 PYSVRVNSEVMASDGSSSMATVCGGSLALMDA-------------GIPLKSHVAGISVGL 470

Query: 169 LCGYPIVDLDYGE 181
           +     VD + GE
Sbjct: 471 MTN---VDAETGE 480


>gi|133919188|emb|CAL29642.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium elkanii]
          Length = 180

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 73/175 (41%), Gaps = 14/175 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I     V   A GS L   G+T  +   TL    +E+    +  T   
Sbjct: 7   RIDGRDAKTVRNIIAEAGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDALSGTYKE 66

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G        +GR GG + +EI   ++  RA+  V+         I +
Sbjct: 67  TFLLHYNFPPYSVGE-------TGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTIRV 119

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA ++L D    ++  +    +  +L+G   A+   +L
Sbjct: 120 VSEITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGQRFAVLSDIL 174


>gi|108763580|ref|YP_630302.1| polynucleotide phosphorylase/polyadenylase [Myxococcus xanthus DK
           1622]
 gi|123374693|sp|Q1DAM1|PNP_MYXXD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|108467460|gb|ABF92645.1| polyribonucleotide nucleotidyltransferase [Myxococcus xanthus DK
           1622]
          Length = 722

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 39/203 (19%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTA-TLEEKVPMWIRNTKHGWITAEY-------GMLPRST 70
           R++K A+GS +V++GDT LL TA +  EK     ++     +T EY       G +P   
Sbjct: 19  RLAKQADGSVVVRYGDTMLLVTAVSAREK-----KDIDFLPLTVEYQEKLYSAGRIP--- 70

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TA 128
           G+  KRE   GR   +     R++ R+ R +         QII    VI +D        
Sbjct: 71  GSYFKRE---GRLTEKETLASRLVDRSCRPLFPEGYAYETQII--ASVISSDPENEGDIH 125

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            ITGA  AL      + D            G +A I  G + G  + +    +    D+D
Sbjct: 126 GITGASAAL-----WVSDIP--------FDGPIAGIRVGRVGGQLVANPTAKQREQSDLD 172

Query: 189 ANFVMTDS-GHIVEVQGSAERAT 210
              VM  S   IV V+G AE  +
Sbjct: 173 --LVMAVSRKAIVMVEGGAEEVS 193


>gi|261416773|ref|YP_003250456.1| polyribonucleotide nucleotidyltransferase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373229|gb|ACX75974.1| polyribonucleotide nucleotidyltransferase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327483|gb|ADL26684.1| polyribonucleotide nucleotidyltransferase [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 744

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 20/172 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR   ++R I +   V   A GS + + G+T  L   TL  K       +  G   
Sbjct: 338 VRLDGRTTTEVRPIEIEMGVLPRAHGSAIFQRGETQGLVICTLGTKADEQRFESLQGEGA 397

Query: 61  AEYGM---LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
             Y +    P  +    K+  +S R+ G       +  R+L +V+ L       I +  +
Sbjct: 398 KSYMLHYNFPPFSVGECKKLGLSRREIGHGH----LAERSLAAVLPLPEDFPYTIRVVSE 453

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           +++++G +  A++ G  ++L D                 +K  VA I+ G++
Sbjct: 454 IMESNGSSSMASVCGGCLSLMDA-------------GVPIKAPVAGIAMGLI 492


>gi|126730394|ref|ZP_01746205.1| Polyribonucleotide nucleotidyltransferase [Sagittula stellata E-37]
 gi|126709127|gb|EBA08182.1| Polyribonucleotide nucleotidyltransferase [Sagittula stellata E-37]
          Length = 713

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 85/205 (41%), Gaps = 26/205 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  +Q+R I     +     GS L   G+T  L   TL    +E++   ++ T   
Sbjct: 318 RIDGRALDQVRSIVSETGILPRTHGSALFTRGETQALVVTTLGTGDDEQMIDALQGTYKS 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  V R    GR   R     ++  RAL++V+  +      I +  +
Sbjct: 378 NFLLHYNFPPYSVG-EVGRVGSPGR---REIGHGKLAWRALQAVLPAATDFPYTIRLVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GYP 173
           + +++G +  A++ G  +++ D                 LK  VA ++ G++      Y 
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDA-------------GVPLKSAVAGVAMGLVLEEDGSYG 480

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSG 197
           I+ D+   ED   D+D     T++G
Sbjct: 481 ILTDILGDEDHLGDMDFKVAGTENG 505


>gi|302763984|ref|XP_002965413.1| hypothetical protein SELMODRAFT_84724 [Selaginella moellendorffii]
 gi|300166227|gb|EFJ32833.1| hypothetical protein SELMODRAFT_84724 [Selaginella moellendorffii]
          Length = 705

 Score = 36.2 bits (82), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 39/193 (20%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
           +R+ GR    +R++     +     GS L   G+T +L T TL      +K+   +   K
Sbjct: 315 IRVDGRSLTDVRDLYCEAGIYPALHGSSLFSRGNTQVLCTVTLGAPEDAQKLDSIVGPPK 374

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ---- 111
             ++   Y   P S  N V      G+ GG +   +R +G    +   L AL   +    
Sbjct: 375 KRFMV-HYSFPPFSV-NEV------GKVGGLN---RREVGHGTLAEKALVALLPPEDENF 423

Query: 112 ---IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
              + ++ +V+ +DG +  A + G  +AL D                 LK HVA IS G+
Sbjct: 424 PYSVRVNSEVMASDGSSSMATVCGGSLALMDA-------------GIPLKSHVAGISVGL 470

Query: 169 LCGYPIVDLDYGE 181
           +     VD + GE
Sbjct: 471 ITN---VDAETGE 480


>gi|158300785|ref|XP_552338.3| AGAP011906-PA [Anopheles gambiae str. PEST]
 gi|157013328|gb|EAL38841.3| AGAP011906-PA [Anopheles gambiae str. PEST]
          Length = 308

 Score = 36.2 bits (82), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 5/145 (3%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R+      V   A+GS  V+ G+T ++ +     ++P   +  + G +  
Sbjct: 43  RKDGRRLQESRKYYAKIGVVSTAKGSAYVELGNTKVIVSVFDPREIPKQNKFCELGELFC 102

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           +    P +   R   +        R + +   +  AL   V      + QI +  +V++ 
Sbjct: 103 DLKFSPFAPAVRKTHQT-----DARERSMTAALTSALNPSVCRHLFPNLQIDVFANVLED 157

Query: 122 DGGTRTAAITGAWVALHDCLQHMED 146
           DG     AIT A +AL D    M D
Sbjct: 158 DGSALAVAITAAGLALGDACVPMFD 182


>gi|212709941|ref|ZP_03318069.1| hypothetical protein PROVALCAL_00991 [Providencia alcalifaciens DSM
           30120]
 gi|212687453|gb|EEB46981.1| hypothetical protein PROVALCAL_00991 [Providencia alcalifaciens DSM
           30120]
          Length = 685

 Score = 36.2 bits (82), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 8/143 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +    + +   G  T 
Sbjct: 294 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTD 353

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 354 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSQAEFPYTVRVVSE 409

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           + +++G +  A++ GA +AL D 
Sbjct: 410 ITESNGSSSMASVCGASLALMDA 432


>gi|148244575|ref|YP_001219269.1| polynucleotide phosphorylase/polyadenylase [Candidatus
           Vesicomyosocius okutanii HA]
 gi|187611332|sp|A5CWW8|PNP_VESOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146326402|dbj|BAF61545.1| polyribonucleotide nucleotidyltransferase [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 695

 Score = 36.2 bits (82), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 10/145 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
           R+ GR    +RE+ +   + K   GS L   G+T  L   TL  K    +         +
Sbjct: 315 RIDGRNNETVRELKIETGILKNTHGSALFTRGETQALVVTTLGPKSDAQLIEKLESPERQ 374

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           + +    Y   P   G   +   +  R+ G     +R I   L S+ +        + + 
Sbjct: 375 NNYFLLHYNFPPYCVGETGRLATIKRREIGHGHLARRGITACLPSIEEF----PYTVRVV 430

Query: 116 CDVIQADGGTRTAAITGAWVALHDC 140
            ++ +++G +  A++ G+ ++L D 
Sbjct: 431 SEITESNGSSSMASVCGSSLSLMDA 455


>gi|57242200|ref|ZP_00370139.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter
           upsaliensis RM3195]
 gi|57016880|gb|EAL53662.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter
           upsaliensis RM3195]
          Length = 717

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 24/149 (16%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------------LEEKVPM 49
           R  GR  N++R I +   +   A GSCL   G T  L  AT            L EK P+
Sbjct: 339 RADGRALNEVRAIEIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMVDLLSEKNPI 398

Query: 50  WIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS 109
             R          Y     S G     +A   R+ G       ++ RAL   VD +    
Sbjct: 399 SER------FMVNYNFPGFSVGEASPIKAPGRRELGHGN----LVKRALYPSVDENYPYV 448

Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALH 138
            +++   ++++++G +  A + G  +AL 
Sbjct: 449 VRLV--SEILESNGSSSMATVCGGSLALR 475


>gi|330982561|gb|EGH80664.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 519

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 23/203 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 93  RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 152

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R++++++  + +    I +
Sbjct: 153 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRV 205

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++ +++G +  A++ GA +AL D    M+       +  V +G   AI         +
Sbjct: 206 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAI---------L 256

Query: 175 VDLDYGEDSTIDVDANFVMTDSG 197
            D+   ED   D+D     T  G
Sbjct: 257 TDILGDEDHLGDMDFKVAGTSKG 279


>gi|120609946|ref|YP_969624.1| polynucleotide phosphorylase/polyadenylase [Acidovorax citrulli
           AAC00-1]
 gi|187470931|sp|A1TLL2|PNP_ACIAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|120588410|gb|ABM31850.1| 3' exoribonuclease [Acidovorax citrulli AAC00-1]
          Length = 758

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGW-- 58
           R+ GR    +R I +   V     GS L   G+T  L  +TL  E+    I      +  
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFED 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL +V+         I +  +
Sbjct: 377 RFMFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVAVLPTKEEFPYTIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A++ G  +++ D    M             K HVA I+ G++
Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLI 471


>gi|158320566|ref|YP_001513073.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus oremlandii
           OhILAs]
 gi|187470976|sp|A8MFB4|PNP_ALKOO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|158140765|gb|ABW19077.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus oremlandii
           OhILAs]
          Length = 706

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 106/238 (44%), Gaps = 35/238 (14%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74
           ++++ + GSCL+K+G T +L  A    +  E +  +  +  +       G +P   G  +
Sbjct: 20  KLAQLSNGSCLLKYGQTAVLVNACASKSPREGIDFFPLSVDYEEKMYAAGKIP---GGFI 76

Query: 75  KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
           KRE   GR    +    R+I R +R +         QII     +  D      A+ G+ 
Sbjct: 77  KRE---GRPSENAILTSRLIDRPIRPLFPDGYRNDVQIIATVLSVDIDCTPDIVAMLGSS 133

Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL--DYGEDSTIDV----- 187
           +AL      + D    FQ      G  A++  G++ G  +++   D  E S++D+     
Sbjct: 134 IAL-----SISDIP--FQ------GPTASVHVGLVDGKLLINPTSDEREHSSLDLVVSGT 180

Query: 188 -DANFVMTDSG--HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            DA  +M ++G   + E Q   E   F+ +    +++  ++  A++ K +++V++ E+
Sbjct: 181 KDA-VMMIEAGANEVTEAQ-MLEAILFAHEEIKNIISFIEEIAAEVGKEKQEVVTLEI 236


>gi|294500891|ref|YP_003564591.1| polynucleotide phosphorylase (PNPase) [Bacillus megaterium QM
           B1551]
 gi|294350828|gb|ADE71157.1| polynucleotide phosphorylase (PNPase) [Bacillus megaterium QM
           B1551]
          Length = 708

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 17/90 (18%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTG 71
           +++K A G+ L+++GDT +L+TAT   K P   +N     +T  Y       G +P   G
Sbjct: 23  QLAKQANGAALIRYGDTVVLSTATA-SKEP---KNVDFFPLTVNYEERLYAVGKIP---G 75

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSV 101
             +KRE   GR   ++    R+I R +R +
Sbjct: 76  GFIKRE---GRPSEKAILASRLIDRPIRPL 102


>gi|295706237|ref|YP_003599312.1| polynucleotide phosphorylase [Bacillus megaterium DSM 319]
 gi|294803896|gb|ADF40962.1| polynucleotide phosphorylase (PNPase) [Bacillus megaterium DSM 319]
          Length = 708

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 17/90 (18%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTG 71
           +++K A G+ L+++GDT +L+TAT   K P   +N     +T  Y       G +P   G
Sbjct: 23  QLAKQANGAALIRYGDTVVLSTATA-SKEP---KNVDFFPLTVNYEERLYAVGKIP---G 75

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSV 101
             +KRE   GR   ++    R+I R +R +
Sbjct: 76  GFIKRE---GRPSEKAILASRLIDRPIRPL 102


>gi|225164705|ref|ZP_03726942.1| Polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium
           TAV2]
 gi|224800695|gb|EEG19054.1| Polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium
           TAV2]
          Length = 747

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 79/218 (36%), Gaps = 44/218 (20%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R    +R ++          GS L + GDT  L TATL         +   G  T
Sbjct: 315 LRADKRDAKTIRPLASEVGTLPRVHGSALFQRGDTQTLVTATLGPTKEAQDMDGLTGGAT 374

Query: 61  AE-----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGS 109
           ++     Y   P S G        +GR G      +R IG      R+L  V+    +  
Sbjct: 375 SKSFILHYNFPPYSVGE-------TGRFGNPG---RREIGHGALAERSLVPVLPPEDVFP 424

Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             I +  D++ ++G T  A+I G  +AL D                 +   VA ISCG++
Sbjct: 425 YTIRLVSDIMASNGSTSMASICGGCLALMDA-------------GVPIIAPVAGISCGLM 471

Query: 170 CG----------YPIVDLDYGEDSTIDVDANFVMTDSG 197
                         I D+   ED   D+D     T SG
Sbjct: 472 TSNKDDGSIDKWVTITDILGEEDHFGDMDFKLAGTTSG 509


>gi|315124713|ref|YP_004066717.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315018435|gb|ADT66528.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
          Length = 719

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 4/138 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWI 59
           R  GR  N++R I++   +   A GSCL   G T  L  ATL  E    M    T+   I
Sbjct: 336 RADGRSLNEVRPINIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           +  + +     G  V   +     G R      +  RAL   VD +     +++   +++
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLV--SEIL 453

Query: 120 QADGGTRTAAITGAWVAL 137
           +++G +  A + G  +AL
Sbjct: 454 ESNGSSSMATVCGGSLAL 471


>gi|86150855|ref|ZP_01069071.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|85842025|gb|EAQ59271.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 260.94]
          Length = 719

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 4/138 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWI 59
           R  GR  N++R I++   +   A GSCL   G T  L  ATL  E    M    T+   I
Sbjct: 336 RADGRSLNEVRPINIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           +  + +     G  V   +     G R      +  RAL   VD +     +++   +++
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLV--SEIL 453

Query: 120 QADGGTRTAAITGAWVAL 137
           +++G +  A + G  +AL
Sbjct: 454 ESNGSSSMATVCGGSLAL 471


>gi|322418695|ref|YP_004197918.1| polyribonucleotide nucleotidyltransferase [Geobacter sp. M18]
 gi|320125082|gb|ADW12642.1| polyribonucleotide nucleotidyltransferase [Geobacter sp. M18]
          Length = 696

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 87/221 (39%), Gaps = 38/221 (17%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R I+    +   A GS L   G+T  +  ATL     E+++     +++ 
Sbjct: 312 RIDGRDTKTIRNIATEVGLLPRAHGSALFTRGETQSIVAATLGTSVDEQRIDSLYGDSRK 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++   Y   P S G    R A   R+ G     +R + + L    D        I I  
Sbjct: 372 KFLL-HYNFPPYSVGETSFRLAPGRREIGHGMLAERALQQVLPKHDDF----PYTIRIVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           D+ +++G +  A + G  +++ D                 +K  VA I+ G+        
Sbjct: 427 DITESNGSSSMATVCGGSLSMMDA-------------GIPIKAPVAGIAMGL-------- 465

Query: 177 LDYGEDSTIDVDANFVMTDSGHI----VEVQGSAERATFSQ 213
           +  G+D  I  D   ++ D  H+     +V G+AE  T  Q
Sbjct: 466 IKEGDDFAILSD---ILGDEDHLGDMDFKVAGTAEGVTALQ 503


>gi|170582819|ref|XP_001896302.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
           malayi]
 gi|158596526|gb|EDP34857.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
           malayi]
          Length = 277

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 26/145 (17%)

Query: 8   ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA-------------TLEEKVPMWIRNT 54
           +N  R I +   V    +G+  V+FG T ++ +                E ++ ++++N 
Sbjct: 46  QNTFRSIVMQTGVLHDQKGTVYVEFGSTKIICSVDGPKEITKSADVDPTEGQIYVFLKN- 104

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
               I+AE   L  S        + S ++  R   I+  I  ALRS+V L      QI +
Sbjct: 105 ----ISAESNSLSGSNS-----FSASNKESNR---IRNAIESALRSIVCLELFCKAQIDV 152

Query: 115 DCDVIQADGGTRTAAITGAWVALHD 139
           +  V+  DGG   A++  + +AL D
Sbjct: 153 EITVLNDDGGVLAASLIASSLALID 177


>gi|39977801|ref|XP_370288.1| hypothetical protein MGG_06785 [Magnaporthe oryzae 70-15]
 gi|145013689|gb|EDJ98330.1| hypothetical protein MGG_06785 [Magnaporthe oryzae 70-15]
          Length = 280

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 76/210 (36%), Gaps = 42/210 (20%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRN------ 53
           +R+ GR+ N++R      R    A+GS  ++ G T ++   T   E  P   R       
Sbjct: 13  LRVDGRRWNELRRCHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEAAPGQRRTGVNITA 72

Query: 54  ----------TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD 103
                     +K   +     +   S+ +R KR    GR   R QE+Q  +  AL + + 
Sbjct: 73  TATGGGQGAQSKEAEVVVSIVVAGFSSVDRKKR----GRGDKRIQELQATVSHALSATLH 128

Query: 104 LSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA 163
                   I     V+  DG    A I  A +A  D    M D             +V A
Sbjct: 129 THLFQHSTITFSLHVLSQDGSLLAALINAATLAAVDAGIPMAD-------------YVVA 175

Query: 164 ISCGMLCGY--------PIVDLDYGEDSTI 185
            S G    Y        P++DL+  E++ +
Sbjct: 176 CSAGSTSSYAAADESADPLLDLNQQEETEL 205


>gi|172040539|ref|YP_001800253.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           urealyticum DSM 7109]
 gi|257096683|sp|B1VDC1|PNP_CORU7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|171851843|emb|CAQ04819.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           urealyticum DSM 7109]
          Length = 765

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 51/251 (20%), Positives = 101/251 (40%), Gaps = 32/251 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
            R+ GR    +R++ +  ++   A GS L + G+T +L   TL     E+ +      T 
Sbjct: 380 FRIDGRDHTSIRDLGIVVQLLPRAHGSALFERGETQILGVTTLDTLKMEQTIDSLGPETS 439

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I   Y   P STG   +  +   R+ G     +R +   L S  +      RQ+   
Sbjct: 440 KRYI-HHYNFPPYSTGETGRVGSPKRREIGHGALAERALTPVLPSREEFP-YTIRQV--- 494

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            + + ++G T   ++  + ++L++                 LK  VA I+ G++ G    
Sbjct: 495 SEALGSNGSTSMGSVCASTLSLYNA-------------GVPLKAPVAGIAMGLVSGLVDG 541

Query: 173 -----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                 + D+   ED+  D+D     T S ++  +Q   +      +   + L  A+   
Sbjct: 542 KEKFVSLTDILGAEDAFGDMDFKVAGT-SEYVTALQLDTKLDGLPSEVLASALGQARSAR 600

Query: 228 ADLIKLQKDVI 238
            ++++L +D I
Sbjct: 601 LEILQLMEDAI 611


>gi|299137357|ref|ZP_07030539.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp.
           MP5ACTX8]
 gi|298600762|gb|EFI56918.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp.
           MP5ACTX8]
          Length = 818

 Score = 36.2 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 86/206 (41%), Gaps = 27/206 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
           +R   R  +++R I++   V     GS L   G+T  L +ATL      +++  +    K
Sbjct: 314 IRPDHRAFDEIRAITIETGVLPRVHGSALFTRGETQALVSATLGTTDDAQRMESYEGEQK 373

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P S G   +   V  R+ G       +  RA+ +V+         + + 
Sbjct: 374 RKFML-HYNFPPFSVGEVGRMTGVGRREIGHGA----LAWRAIEAVLPGEDESPYTLRVV 428

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GY 172
            D+++++G +  A + GA ++L              Q    LKG VA ++ G++     Y
Sbjct: 429 SDILESNGSSSMATVCGASLSL-------------MQAGIPLKGSVAGVAMGLVKEGDKY 475

Query: 173 PIV-DLDYGEDSTIDVDANFVMTDSG 197
            I+ D+   ED   D+D     T +G
Sbjct: 476 AILTDIAGAEDHYGDMDFKVAGTRNG 501


>gi|313206118|ref|YP_004045295.1| polyribonucleotide nucleotidyltransferase [Riemerella anatipestifer
           DSM 15868]
 gi|312445434|gb|ADQ81789.1| polyribonucleotide nucleotidyltransferase [Riemerella anatipestifer
           DSM 15868]
 gi|315022925|gb|EFT35948.1| Polyribonucleotide nucleotidyltransferase [Riemerella anatipestifer
           RA-YM]
 gi|325336437|gb|ADZ12711.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Riemerella anatipestifer RA-GD]
          Length = 711

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 14/146 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
           +RL GR   Q+R I         A GS +   G+T  LTT TL       ++   I  T+
Sbjct: 321 IRLDGRNNQQIRPIWSEVDYLPAAHGSSVFTRGETQSLTTVTLGSLMDANRIDSVI--TQ 378

Query: 56  HGW-ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           H       Y   P STG        S R+ G     Q    RAL+ ++      + +I+ 
Sbjct: 379 HDERFYLHYNFPPFSTGEARPLRGTSRREVGHGNLAQ----RALKVMIPEETPYTIRIV- 433

Query: 115 DCDVIQADGGTRTAAITGAWVALHDC 140
             D+++++G +  A +    +AL D 
Sbjct: 434 -SDILESNGSSSMATVCAGTLALMDA 458


>gi|294791724|ref|ZP_06756872.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 6_1_27]
 gi|294456954|gb|EFG25316.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 6_1_27]
          Length = 689

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 35/232 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T  ++K A G+ +V +GDT +L TAT  ++     ++     +T +Y       G LP  
Sbjct: 17  TGELAKQASGAVMVGYGDTRVLVTATGSKEA----KDIDFFPLTVDYEEKMYAVGRLP-- 70

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KREA   R    +    R+I R +R + +        ++     +  D       
Sbjct: 71  -GGFIKREA---RPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPAICG 126

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           + GA  AL               +S V   G +A +  G + G  +V+    +    D++
Sbjct: 127 MIGASAAL--------------SISDVPWNGPIAGVRMGRINGEFVVNPTKSQLEETDLN 172

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                T    I+ V+G AE     +D    ++  A + I  ++  Q+D+ + 
Sbjct: 173 IVVAGTKDA-ILMVEGGAEE--VPEDIILEVIMAAHEEIKKIVAFQEDMTAK 221


>gi|121604326|ref|YP_981655.1| polynucleotide phosphorylase/polyadenylase [Polaromonas
           naphthalenivorans CJ2]
 gi|187610307|sp|A1VM56|PNP_POLNA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|120593295|gb|ABM36734.1| 3' exoribonuclease [Polaromonas naphthalenivorans CJ2]
          Length = 703

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 27/175 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGW-- 58
           R+ GR    +R I +   V     GS L   G+T  L   TL  E+    I      +  
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVTTLGTERDAQRIDALSGDYED 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y M P +TG        +GR G  + +EI   R+  RAL +V+         + +
Sbjct: 377 RFMLHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIAVLPSKEEFPYTMRV 429

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ G  ++L D    M             K HVA I+ G++
Sbjct: 430 VSEITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLI 471


>gi|282600044|ref|ZP_05972801.2| polyribonucleotide nucleotidyltransferase [Providencia rustigianii
           DSM 4541]
 gi|282566848|gb|EFB72383.1| polyribonucleotide nucleotidyltransferase [Providencia rustigianii
           DSM 4541]
          Length = 685

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 8/143 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +    + +   G  T 
Sbjct: 294 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTD 353

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     I +  +
Sbjct: 354 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSHADFPYTIRVVSE 409

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           + +++G +  A++ GA +AL D 
Sbjct: 410 ITESNGSSSMASVCGASLALMDA 432


>gi|125599245|gb|EAZ38821.1| hypothetical protein OsJ_23227 [Oryza sativa Japonica Group]
          Length = 778

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 83/211 (39%), Gaps = 32/211 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R  GR   ++R I+    +   A GS L   G+T  L   TL      +++   +   + 
Sbjct: 324 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEES 383

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +  A + R+ G       +  RAL  ++         I ++ 
Sbjct: 384 KSFYLQYTFPPSSVGEVGRIGAPNRREIGHGM----LAERALEPILPPEEDFPYTIRVES 439

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------ 170
            + +++G +  A++ G  +AL D                 +K  VA I+ G++       
Sbjct: 440 TITESNGSSSMASVCGGCLALQDA-------------GVPIKFPVAGIAMGLVLDTLEFG 486

Query: 171 --GYPIV--DLDYGEDSTIDVDANFVMTDSG 197
             G P++  D+   ED++ D+D      ++G
Sbjct: 487 GDGKPLILSDITGAEDASGDMDFKVAGNENG 517


>gi|326316095|ref|YP_004233767.1| polyribonucleotide nucleotidyltransferase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372931|gb|ADX45200.1| polyribonucleotide nucleotidyltransferase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 759

 Score = 36.2 bits (82), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGW-- 58
           R+ GR    +R I +   V     GS L   G+T  L  +TL  E+    I      +  
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFED 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL +V+         I +  +
Sbjct: 377 RFMFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVAVLPTKEEFPYTIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A++ G  +++ D    M             K HVA I+ G++
Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLI 471


>gi|89101186|ref|ZP_01174017.1| PnpA [Bacillus sp. NRRL B-14911]
 gi|89084095|gb|EAR63265.1| PnpA [Bacillus sp. NRRL B-14911]
          Length = 706

 Score = 36.2 bits (82), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 17/90 (18%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTG 71
           +++K A G+ L+++GDT +L+TAT   K P   +N     +T  Y       G +P   G
Sbjct: 23  QLAKQANGAALIRYGDTAVLSTATA-SKEP---KNLDFFPLTVNYEERLYAVGKIP---G 75

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSV 101
             +KRE   GR   ++    R+I R +R +
Sbjct: 76  GFIKRE---GRPSEKAILASRLIDRPIRPL 102


>gi|225849804|ref|YP_002730038.1| polynucleotide phosphorylase/polyadenylase [Persephonella marina
           EX-H1]
 gi|257096700|sp|C0QTM3|PNP_PERMH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225646061|gb|ACO04247.1| polyribonucleotide nucleotidyltransferase [Persephonella marina
           EX-H1]
          Length = 709

 Score = 36.2 bits (82), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 67/174 (38%), Gaps = 22/174 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
           +R+ GR+ +++R I +   +     GS +   G T      TL     E+         +
Sbjct: 317 VRIDGRRPDEIRPIWIRTGLFPRIHGSAIFTRGQTQAFVATTLGAPGEEQIEESIEEGEE 376

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P STG      A S R+ G       +  RA+  ++         I + 
Sbjct: 377 KKRFMLHYNFPPFSTGEARPPRAPSRREIGHGN----LAERAIEPLIPDEEEFPYVIRVV 432

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            ++++++G T  A + GA ++L D    M             K HVA I+ G+L
Sbjct: 433 SEILESNGSTSMATVCGASLSLFDAGVPM-------------KKHVAGIAMGLL 473


>gi|148251685|ref|YP_001236270.1| polynucleotide phosphorylase/polyadenylase [Bradyrhizobium sp.
           BTAi1]
 gi|187470940|sp|A5E870|PNP_BRASB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146403858|gb|ABQ32364.1| Polyribonucleotide nucleotidyltransferase [Bradyrhizobium sp.
           BTAi1]
          Length = 720

 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 80/203 (39%), Gaps = 23/203 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I     V   A GS L   G+T  L   TL    +E+    +  T   
Sbjct: 316 RIDGRDVKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDALSGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G        +GR GG + +EI   ++  RA+  V+           +
Sbjct: 376 TFLLHYNFPPYSVGE-------TGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTTRV 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             +V +++G +  A + G+ +AL D    ++  +    +  +L+G   A+   +L     
Sbjct: 429 VSEVTESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRYAVLSDILG---- 484

Query: 175 VDLDYGEDSTIDVDANFVMTDSG 197
                 ED   D+D     T+SG
Sbjct: 485 -----DEDHLGDMDFKVAGTESG 502


>gi|332526743|ref|ZP_08402845.1| polynucleotide phosphorylase/polyadenylase [Rubrivivax
           benzoatilyticus JA2]
 gi|332111146|gb|EGJ11178.1| polynucleotide phosphorylase/polyadenylase [Rubrivivax
           benzoatilyticus JA2]
          Length = 769

 Score = 35.8 bits (81), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 29/176 (16%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R I +   V     GS L   G+T  L  ATL      +++       + 
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVAATLGTERDAQRIDALAGEFED 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGSRQII 113
            ++   Y M P +TG        +GR G  + +EI   R+  RAL +V+         + 
Sbjct: 377 RFML-HYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALVAVLPNKDEFPYTMR 428

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           +  ++ +++G +  A++ G  ++L D                 LK HVA I+ G++
Sbjct: 429 VVSEITESNGSSSMASVCGGCLSLLDA-------------GVPLKAHVAGIAMGLI 471


>gi|300087646|ref|YP_003758168.1| polyribonucleotide nucleotidyltransferase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527379|gb|ADJ25847.1| polyribonucleotide nucleotidyltransferase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 733

 Score = 35.8 bits (81), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 68/174 (39%), Gaps = 24/174 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+SGR   ++RE+S    V     GS L   G T +L   TL     E+K+      T  
Sbjct: 313 RVSGRGIEEIRELSAEVGVLPRVHGSALFSRGQTQILNVVTLGSLQMEQKLDNISPETSK 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            +I   Y   P S G   KR     R+ G       +  RAL  VV   A     + +  
Sbjct: 373 RYIH-HYNFPPYSVGE-TKRIGTGRREIGHGA----LAERALLPVVPSEAEFPYALRLVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + + ++G T  A+   + ++L D                 +K  VA IS G++ 
Sbjct: 427 EAVSSNGSTSMASACASSLSLMDA-------------GVPIKKPVAGISIGLIT 467


>gi|33242368|ref|NP_877309.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila
           pneumoniae TW-183]
 gi|33236879|gb|AAP98966.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae
           TW-183]
          Length = 694

 Score = 35.8 bits (81), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 8/143 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R  GR    +R I++         GSCL   G+T  L   TL  +         +G   
Sbjct: 314 IRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSEAMAQRYEDLNGEGL 373

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G  V R    GR   R     ++  +AL   +  SA     I I+ 
Sbjct: 374 SKFYLQYFFPPFSVG-EVGRIGSPGR---REIGHGKLAEKALSHALPDSATFPYTIRIES 429

Query: 117 DVIQADGGTRTAAITGAWVALHD 139
           ++ +++G +  A++ G  +AL D
Sbjct: 430 NITESNGSSSMASVCGGCLALMD 452


>gi|189220135|ref|YP_001940775.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Methylacidiphilum infernorum V4]
 gi|189186993|gb|ACD84178.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Methylacidiphilum infernorum V4]
          Length = 669

 Score = 35.8 bits (81), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 67/175 (38%), Gaps = 22/175 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R  GR    +R I++   V   + GS L   G+T  L  ATL      +++  +    + 
Sbjct: 275 RCDGRGPEDIRPIAIETSVVPRSHGSSLFCRGETQALCMATLASLNEAQELDAYGGGEQS 334

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +    S R+ G     +R +   + S  D        I +  
Sbjct: 335 KRFLLHYFFPPFSVGEVGRITGQSRREIGHGALAERSLLPVIPSETDF----PYAIRVSS 390

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
           ++++++G T  A + G  +AL D                 LK  VA IS G++ G
Sbjct: 391 EILESNGSTSMATVCGGSLALMDA-------------GVPLKTSVAGISVGLVKG 432


>gi|67459113|ref|YP_246737.1| polynucleotide phosphorylase/polyadenylase [Rickettsia felis
           URRWXCal2]
 gi|75536454|sp|Q4ULK1|PNP_RICFE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|67004646|gb|AAY61572.1| Polyribonucleotide nucleotidyltransferase [Rickettsia felis
           URRWXCal2]
          Length = 747

 Score = 35.8 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 20/130 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-------PMWIRNTKHGWITAEYGMLPRS 69
           T ++++ A+G+  VK G++ LL TA + +K        P+ I   +  + T   G +P  
Sbjct: 20  TGKIARQADGAVTVKMGNSVLLCTAVVAKKAKEGIGFFPLTINYREMAYAT---GKIP-- 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT-- 127
            G   KRE   G+   R   + R+I R +R +   + +    +   C V+  D  T    
Sbjct: 75  -GGFFKRE---GKASDREVLVSRLIDRPIRPLFHPAFVNETHVT--CSVLSYDPETPVDI 128

Query: 128 AAITGAWVAL 137
            AI GA  AL
Sbjct: 129 LAIIGASAAL 138


>gi|84500513|ref|ZP_00998762.1| polyribonucleotide nucleotidyltransferase [Oceanicola batsensis
           HTCC2597]
 gi|84391466|gb|EAQ03798.1| polyribonucleotide nucleotidyltransferase [Oceanicola batsensis
           HTCC2597]
          Length = 712

 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 21/173 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R+I +   +     GS L   G+T  L   TL       I +  HG   +
Sbjct: 318 RIDGRALDQVRQIEVETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQIIDALHGNFRS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+  +      I +  +
Sbjct: 378 NFLLHYNFPPYSVGEAGR----VGPPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           + +++G +  A++ G  +++ D                 LK  VA ++ G++ 
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDA-------------GVPLKAAVAGVAMGLVL 473


>gi|118602474|ref|YP_903689.1| polynucleotide phosphorylase/polyadenylase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|187611284|sp|A1AWB1|PNP_RUTMC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|118567413|gb|ABL02218.1| Polyribonucleotide nucleotidyltransferase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 695

 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 10/145 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
           R+ GR    +RE+ +   V +   GS L   G+T  L   TL  K    +         +
Sbjct: 315 RIDGRDNETVRELKIETGVLENTHGSALFTRGETQALVVTTLGSKREAQLIEKLESSERQ 374

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           + +    Y   P   G   +      R+ G  + ++R I   L S+ +        + + 
Sbjct: 375 NDYFLLHYNFPPYCVGEIGRVGTTKRREIGHGRLVRRGIAACLPSIEEF----PYTVRVV 430

Query: 116 CDVIQADGGTRTAAITGAWVALHDC 140
            ++ +++G +  A+I GA ++L D 
Sbjct: 431 SEITESNGSSSMASICGASLSLMDA 455


>gi|15618907|ref|NP_225193.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila
           pneumoniae CWL029]
 gi|15836530|ref|NP_301054.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila
           pneumoniae J138]
 gi|16752027|ref|NP_445393.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila
           pneumoniae AR39]
 gi|81789835|sp|Q9Z6R0|PNP_CHLPN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|4377328|gb|AAD19136.1| Polyribonucleotide Nucleotidyltransferase [Chlamydophila pneumoniae
           CWL029]
 gi|7189766|gb|AAF38644.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae
           AR39]
 gi|8979372|dbj|BAA99206.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae
           J138]
          Length = 694

 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 8/143 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R  GR    +R I++         GSCL   G+T  L   TL  +         +G   
Sbjct: 314 IRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSEAMAQRYEDLNGEGL 373

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G  V R    GR   R     ++  +AL   +  SA     I I+ 
Sbjct: 374 SKFYLQYFFPPFSVG-EVGRIGSPGR---REIGHGKLAEKALSHALPDSATFPYTIRIES 429

Query: 117 DVIQADGGTRTAAITGAWVALHD 139
           ++ +++G +  A++ G  +AL D
Sbjct: 430 NITESNGSSSMASVCGGCLALMD 452


>gi|115470767|ref|NP_001058982.1| Os07g0168000 [Oryza sativa Japonica Group]
 gi|50509724|dbj|BAD31776.1| putative polynucleotide phosphorylase [Oryza sativa Japonica Group]
 gi|113610518|dbj|BAF20896.1| Os07g0168000 [Oryza sativa Japonica Group]
          Length = 902

 Score = 35.8 bits (81), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 83/211 (39%), Gaps = 32/211 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R  GR   ++R I+    +   A GS L   G+T  L   TL      +++   +   + 
Sbjct: 448 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEES 507

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +  A + R+ G       +  RAL  ++         I ++ 
Sbjct: 508 KSFYLQYTFPPSSVGEVGRIGAPNRREIGHGM----LAERALEPILPPEEDFPYTIRVES 563

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------ 170
            + +++G +  A++ G  +AL D                 +K  VA I+ G++       
Sbjct: 564 TITESNGSSSMASVCGGCLALQDA-------------GVPIKFPVAGIAMGLVLDTLEFG 610

Query: 171 --GYPIV--DLDYGEDSTIDVDANFVMTDSG 197
             G P++  D+   ED++ D+D      ++G
Sbjct: 611 GDGKPLILSDITGAEDASGDMDFKVAGNENG 641


>gi|255082324|ref|XP_002504148.1| predicted protein [Micromonas sp. RCC299]
 gi|226519416|gb|ACO65406.1| predicted protein [Micromonas sp. RCC299]
          Length = 261

 Score = 35.8 bits (81), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 20/184 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT--ATLEEKVPMWIRNTKHGW 58
           +RL GR+  + R +         ++GS + + G+T +L       E + P   R      
Sbjct: 9   LRLDGRRPKETRRMRCELTALPGSDGSAVFELGNTKVLAAVHGPHECRRPSE-RLEDRLL 67

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  E  M   STG R +R     R    + E+   + R + + V    L   Q+ +   V
Sbjct: 68  VKCEVSMAAFSTGERRRRTKGDRR----TNELSTFVRRCIETCVSAELLARSQLDVSIQV 123

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QADGG R AA+  A +A+ D    M+D              +A  S G L   P++DL+
Sbjct: 124 LQADGGVRAAAVNAAVLAIVDAGIPMQDT-------------MACCSAGYLDDTPLLDLN 170

Query: 179 YGED 182
           Y E+
Sbjct: 171 YMEE 174


>gi|125557368|gb|EAZ02904.1| hypothetical protein OsI_25038 [Oryza sativa Indica Group]
          Length = 865

 Score = 35.8 bits (81), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 83/211 (39%), Gaps = 32/211 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R  GR   ++R I+    +   A GS L   G+T  L   TL      +++   +   + 
Sbjct: 411 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEES 470

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +  A + R+ G       +  RAL  ++         I ++ 
Sbjct: 471 KSFYLQYTFPPSSVGEVGRIGAPNRREIGHGM----LAERALEPILPPEEDFPYTIRVES 526

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------ 170
            + +++G +  A++ G  +AL D                 +K  VA I+ G++       
Sbjct: 527 TITESNGSSSMASVCGGCLALQDA-------------GVPIKFPVAGIAMGLVLDTLEFG 573

Query: 171 --GYPIV--DLDYGEDSTIDVDANFVMTDSG 197
             G P++  D+   ED++ D+D      ++G
Sbjct: 574 GDGKPLILSDITGAEDASGDMDFKVAGNENG 604


>gi|229495732|ref|ZP_04389460.1| polyribonucleotide nucleotidyltransferase [Porphyromonas
           endodontalis ATCC 35406]
 gi|229317306|gb|EEN83211.1| polyribonucleotide nucleotidyltransferase [Porphyromonas
           endodontalis ATCC 35406]
          Length = 737

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 12/144 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           RL GR+  ++R I +         GS +   G+T  LTT TL     E+ V   +   K 
Sbjct: 318 RLDGRKTTEIRPIWIETDCLPMPHGSAVFTRGETQSLTTVTLGTKADEKLVDDVLCRCKE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++   Y   P STG    + A   R+ G       +  RAL+ ++        ++I   
Sbjct: 378 RFLL-HYNFPPFSTGEARPQRATGRREIGHGN----LAFRALKRMIPDEYPYVVRVI--S 430

Query: 117 DVIQADGGTRTAAITGAWVALHDC 140
           D+++++G +  A +    +AL D 
Sbjct: 431 DILESNGSSSMATVCAGTLALMDA 454


>gi|187611322|sp|A4XYD6|PNP_PSEMY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 702

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 14/175 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R + +   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 317 RIDGRDTRTVRPLKIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R + +++         I +
Sbjct: 377 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRGVAAMLPKDDEFPYTIRV 429

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M+       +  VL+G   A+   +L
Sbjct: 430 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGEKFAVLTDIL 484


>gi|124266592|ref|YP_001020596.1| polynucleotide phosphorylase/polyadenylase [Methylibium
           petroleiphilum PM1]
 gi|187610284|sp|A2SFM2|PNP_METPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|124259367|gb|ABM94361.1| putative polyribonucleotide nucleotidyltransferase protein
           [Methylibium petroleiphilum PM1]
          Length = 751

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 72/180 (40%), Gaps = 37/180 (20%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55
           R+ GR    +R I +   V     GS L   G+T  L   TL  +     R+T+      
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVITTLGTE-----RDTQRIDALA 371

Query: 56  ---HGWITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEI--QRMIGRALRSVVDLSALGS 109
                     Y M P +TG        +GR G  + +EI   R+  RAL  V+      +
Sbjct: 372 GEFEDRFMFHYNMPPFATGE-------TGRVGSPKRREIGHGRLAKRALIPVLPKKDEFA 424

Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             I +  ++ +++G +  A++ G  +++ D                 LK HVA I+ G++
Sbjct: 425 YAIRVVSEITESNGSSSMASVCGGCLSMMDA-------------GVPLKAHVAGIAMGLI 471


>gi|325103803|ref|YP_004273457.1| polyribonucleotide nucleotidyltransferase [Pedobacter saltans DSM
           12145]
 gi|324972651|gb|ADY51635.1| polyribonucleotide nucleotidyltransferase [Pedobacter saltans DSM
           12145]
          Length = 732

 Score = 35.8 bits (81), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 8/144 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +RL GR   Q+R I         A GS +   G+T  LTT TL    +E++      + +
Sbjct: 318 VRLDGRNSKQIRPIWSEVDYLPSAHGSSIFTRGETQSLTTVTLGSNDDEQMIDGAFISGY 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     STG       V  R+ G       +  RA++ V+         I +  
Sbjct: 378 NRFMLHYNFPAFSTGEARPNRGVGRREVGHGN----LAMRAIKKVLPPDNENPYVIRVVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDC 140
           D+++++G +  A +    +AL D 
Sbjct: 434 DILESNGSSSMATVCAGTLALLDA 457


>gi|269302800|gb|ACZ32900.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae
           LPCoLN]
          Length = 694

 Score = 35.8 bits (81), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 8/143 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R  GR    +R I++         GSCL   G+T  L   TL  +         +G   
Sbjct: 314 IRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSEAMAQRYEDLNGEGL 373

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G  V R    GR   R     ++  +AL   +  SA     I I+ 
Sbjct: 374 SKFYLQYFFPPFSVG-EVGRIGSPGR---REIGHGKLAEKALSHALPDSATFPYTIRIES 429

Query: 117 DVIQADGGTRTAAITGAWVALHD 139
           ++ +++G +  A++ G  +AL D
Sbjct: 430 NITESNGSSSMASVCGGCLALMD 452


>gi|183600370|ref|ZP_02961863.1| hypothetical protein PROSTU_03936 [Providencia stuartii ATCC 25827]
 gi|188020161|gb|EDU58201.1| hypothetical protein PROSTU_03936 [Providencia stuartii ATCC 25827]
          Length = 722

 Score = 35.8 bits (81), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 8/143 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +    + +   G  T 
Sbjct: 330 RIDGREKDMVRALDVRTSVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTD 389

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 390 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVMAVMPDHADFPYTVRVVSE 445

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           + +++G +  A++ GA +AL D 
Sbjct: 446 ITESNGSSSMASVCGASLALMDA 468


>gi|317477841|ref|ZP_07937027.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 4_1_36]
 gi|316905977|gb|EFV27745.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 4_1_36]
          Length = 714

 Score = 35.8 bits (81), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 10/143 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGW- 58
           RL GR+  ++R I           GS +   G+T  L+T TL  K+   I +   +HG  
Sbjct: 319 RLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +  +     +++   D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPANYPYVVRVV--SD 432

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           +++++G +  A +    +AL D 
Sbjct: 433 ILESNGSSSMATVCAGTLALMDA 455


>gi|160887886|ref|ZP_02068889.1| hypothetical protein BACUNI_00289 [Bacteroides uniformis ATCC 8492]
 gi|156862572|gb|EDO56003.1| hypothetical protein BACUNI_00289 [Bacteroides uniformis ATCC 8492]
          Length = 714

 Score = 35.8 bits (81), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 10/143 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGW- 58
           RL GR+  ++R I           GS +   G+T  L+T TL  K+   I +   +HG  
Sbjct: 319 RLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +  +     +++   D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPANYPYVVRVV--SD 432

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           +++++G +  A +    +AL D 
Sbjct: 433 ILESNGSSSMATVCAGTLALMDA 455


>gi|87200495|ref|YP_497752.1| polynucleotide phosphorylase/polyadenylase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|123736106|sp|Q2G5F5|PNP_NOVAD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|87136176|gb|ABD26918.1| Polyribonucleotide nucleotidyltransferase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 772

 Score = 35.8 bits (81), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 8/172 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR   Q+R I           GS L   G+T  + T TL     E++   +   ++ 
Sbjct: 315 RIDGRTTTQVRPIEAIVGFLPRTHGSSLFTRGETQAICTTTLGTKDAEQMIDGLEGLRYE 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  V R    GR   R     ++  RAL  V+         I I  D
Sbjct: 375 NFMLHYNFPPYSVGE-VGRFGAPGR---REVGHGKLAWRALHPVLPTKEEFPYTIRILSD 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A + G  +++ D    ++   +   +  +L+G   A+   +L
Sbjct: 431 ITESNGSSSMATVCGGCLSMMDAGVPVKRPVSGIAMGLILEGDKFAVLSDIL 482


>gi|153004013|ref|YP_001378338.1| polynucleotide phosphorylase/polyadenylase [Anaeromyxobacter sp.
           Fw109-5]
 gi|187470964|sp|A7H9F8|PNP_ANADF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|152027586|gb|ABS25354.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 722

 Score = 35.8 bits (81), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 79/199 (39%), Gaps = 26/199 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTT----ATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           T +V+K A GS  V+ GD+ +L T    A  +E +  +     +       G +P   G+
Sbjct: 19  TGKVAKQAHGSVWVRMGDSIVLVTVVSAAEKKEGIDFFPLTVDYQEKLFAAGRVP---GS 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
             +RE   GR   +     R++ R+ R +         QII        +  T   A+TG
Sbjct: 76  FFRRE---GRPTEKETLTSRIVDRSCRPLFAEGYPNETQIIATVISFDQENDTDVLALTG 132

Query: 133 AWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
           A  ALH              LS +   G +A +  G + G  + +    + +  D+D   
Sbjct: 133 ASAALH--------------LSDIPFNGPIAGVRVGRVNGQFVANPTLAQRAEADLDV-I 177

Query: 192 VMTDSGHIVEVQGSAERAT 210
           +      IV V+G A+  +
Sbjct: 178 MAASRDAIVMVEGGAKEVS 196


>gi|110678016|ref|YP_681023.1| polynucleotide phosphorylase/polyadenylase [Roseobacter
           denitrificans OCh 114]
 gi|123065912|sp|Q16CF6|PNP_ROSDO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|109454132|gb|ABG30337.1| polyribonucleotide nucleotidyltransferase [Roseobacter
           denitrificans OCh 114]
          Length = 711

 Score = 35.8 bits (81), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 87/208 (41%), Gaps = 32/208 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR+ +++R+I     +     GS L   G+T  L   TL     E+ +     N K 
Sbjct: 318 RIDGRKTDEIRDIVCETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377

Query: 57  GWITAEYGMLPRSTGN--RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
            ++   Y   P S G   RV      G  G R     ++  RAL++V+  +      + +
Sbjct: 378 NFLL-HYNFPPYSVGEAGRV------GPPGRREIGHGKLAWRALQAVLPAATDFPYTVRV 430

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---- 170
             ++ +++G +  A++ G  +++ D                 LK  VA ++ G++     
Sbjct: 431 VSEITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLILEEDG 477

Query: 171 GYPIV-DLDYGEDSTIDVDANFVMTDSG 197
            Y I+ D+   ED   D+D     T++G
Sbjct: 478 SYAILSDILGDEDHLGDMDFKVAGTEAG 505


>gi|237743308|ref|ZP_04573789.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 7_1]
 gi|229433087|gb|EEO43299.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 7_1]
          Length = 703

 Score = 35.8 bits (81), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 67/172 (38%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR   ++R +     V     GS L   G+T  L   TL    +E++   +    + 
Sbjct: 328 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 387

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  V R +  GR   R      +  RALR V+         I +  +
Sbjct: 388 KFYLHYNFPPYSVG-EVGRMSSPGR---RELGHGSLAERALRYVIPTEEEFPYTIRVVSE 443

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A+I G  ++L                   +K HVA I+ G++
Sbjct: 444 ITESNGSSSQASICGGSLSLMAA-------------GVPIKEHVAGIAMGLI 482


>gi|319760252|ref|YP_004124190.1| polyribonucleotide nucleotidyltransferase [Candidatus Blochmannia
           vafer str. BVAF]
 gi|318038966|gb|ADV33516.1| polyribonucleotide nucleotidyltransferase [Candidatus Blochmannia
           vafer str. BVAF]
          Length = 697

 Score = 35.8 bits (81), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 28/154 (18%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR ++ +REI +   V     GS L   G+T  L   TL  +     RN ++    
Sbjct: 315 LRLDGRSQDMIREIDIKIGVLPRTHGSALFTRGETQALVAVTLGTE-----RNAQN---- 365

Query: 61  AEYGMLPRSTGNRVKREAVS--------GRQGGRSQEIQRMIG------RALRSVVDLSA 106
                L   TG+RV R  +         G  G      +R IG      R + +V+  S 
Sbjct: 366 -----LDELTGDRVDRFLMHYNFNPYCVGEIGIVGAPKRREIGHGRLAKRGMLAVMPDSN 420

Query: 107 LGSRQIIIDCDVIQADGGTRTAAITGAWVALHDC 140
                I +  ++ +++G +  A+I GA +AL D 
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASICGASLALMDA 454


>gi|319649514|ref|ZP_08003670.1| PnpA protein [Bacillus sp. 2_A_57_CT2]
 gi|317398676|gb|EFV79358.1| PnpA protein [Bacillus sp. 2_A_57_CT2]
          Length = 706

 Score = 35.8 bits (81), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 17/90 (18%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTG 71
           +++K A G+ LV++GDT +L+TAT   K P   +N     +T  Y       G +P   G
Sbjct: 23  QLAKQANGAVLVRYGDTVVLSTATA-SKEP---KNLDFFPLTVNYEERLYAVGKIP---G 75

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSV 101
             +KRE   GR   ++    R+I R +R +
Sbjct: 76  GFIKRE---GRPSEKAILASRLIDRPIRPL 102


>gi|241889884|ref|ZP_04777182.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans ATCC
           10379]
 gi|241863506|gb|EER67890.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans ATCC
           10379]
          Length = 695

 Score = 35.8 bits (81), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 103/238 (43%), Gaps = 50/238 (21%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRSTGNR 73
           +++ A  + +VK+GDT +LTTA   ++       P+ +   +  +     G +P   G  
Sbjct: 24  MARQANAAVVVKYGDTVVLTTAVASKEAKDVDFFPLTVNYEEKMYAV---GKIP---GGF 77

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII-------IDCDVIQADGGTR 126
           ++RE   GR G  +    R+I R +R + +       Q+I        DCD + A     
Sbjct: 78  LRRE---GRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLSVEYDCDPVMA----- 129

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD--LDYGEDST 184
                    A+      +   +  F      KG +A ++ G + G  +++  ++  E ST
Sbjct: 130 ---------AMLGSSLSLSVSNIPF------KGPIAGVTVGYVDGEYVINPTVEQMERST 174

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           +D+      +D+ ++VE  G+ E    S++     +    + I  LI+ Q+ ++ NE+
Sbjct: 175 VDLKVAGT-SDAINMVEA-GAKE---VSEEIMLNAIMFGHEEIKRLIEFQQQIV-NEI 226


>gi|126459545|ref|YP_001055823.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum calidifontis
           JCM 11548]
 gi|126249266|gb|ABO08357.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum calidifontis
           JCM 11548]
          Length = 274

 Score = 35.8 bits (81), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 94/239 (39%), Gaps = 26/239 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R + +   V K A+GS  VK G TH++    +    P +      G +  
Sbjct: 29  RIDGREVDQVRPVEVKTGVVKTADGSAEVKLGKTHVVAGVKIGLGQP-FPDAPDEGVLVV 87

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVD---LSALGSRQII--I 114
              +LP ++          G     + E+ R++ R LR    VD   LS  G +  +  +
Sbjct: 88  NAEVLPHASPY-----TEVGPPDEFAIELARVVDRGLRHCGYVDFKKLSVEGGKAYVLWV 142

Query: 115 DCDVIQADGG----------TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
           D  VI  DG                     V   +      D +++  +   L+    A+
Sbjct: 143 DLYVINDDGNLVDAANLAAVAALKNAALPAVVKDETGAVKLDRNSRTPMPLDLEKAPIAV 202

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           S G +     +D  + E+ ++D    +       IV +Q +    +F+Q    A L+LA
Sbjct: 203 SVGKIANVLFLDPIFEEELSLDGRITYTFAQE-RIVAIQKTL--GSFTQQELEAALDLA 258


>gi|84684402|ref|ZP_01012303.1| polyribonucleotide nucleotidyltransferase [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667381|gb|EAQ13850.1| polyribonucleotide nucleotidyltransferase [Rhodobacterales
           bacterium HTCC2654]
          Length = 716

 Score = 35.8 bits (81), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 96/233 (41%), Gaps = 27/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  +Q+R I     +     GS L   G+T  L   TL    +E++   +  T   
Sbjct: 318 RIDGRALDQVRPILAEVGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDALTGTYKS 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  V R    GR   R     ++  RAL++V+  +      I +  +
Sbjct: 378 NFLLHYNFPPYSVG-EVGRVGSPGR---REIGHGKLAWRALQAVLPAATDFPYTIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GYP 173
           + +++G +  A++ G  +++ D              +  LK  VA ++ G++      Y 
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDA-------------AVPLKAPVAGVAMGLVLEDDGSYA 480

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
           ++ D+   ED   D+D     T++G I  +Q   + A  + +     L  AKD
Sbjct: 481 VLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKALAQAKD 532


>gi|269797830|ref|YP_003311730.1| 3' exoribonuclease [Veillonella parvula DSM 2008]
 gi|269094459|gb|ACZ24450.1| 3' exoribonuclease [Veillonella parvula DSM 2008]
          Length = 689

 Score = 35.8 bits (81), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 35/232 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T  ++K A G+ +V +GDT +L TAT  ++     ++     +T +Y       G LP  
Sbjct: 17  TGELAKQAGGAVMVGYGDTRVLVTATGSKEA----KDIDFFPLTVDYEEKMYAVGRLP-- 70

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KREA   R    +    R+I R +R + +        ++     +  D       
Sbjct: 71  -GGFIKREA---RPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPAICG 126

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           + GA  AL               +S V   G +A +  G + G  +V+    +    D++
Sbjct: 127 MIGASAAL--------------SISDVPWNGPIAGVRMGRINGEFVVNPTKAQLEETDLN 172

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                T    I+ V+G AE     +D    ++  A + I  ++  Q+D+ + 
Sbjct: 173 IVVAGTKDA-ILMVEGGAEE--VPEDIILEVIMAAHEEIKKIVAFQEDMTAK 221


>gi|90022349|ref|YP_528176.1| polynucleotide phosphorylase/polyadenylase [Saccharophagus
           degradans 2-40]
 gi|122996024|sp|Q21H65|PNP_SACD2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|89951949|gb|ABD81964.1| Polyribonucleotide nucleotidyltransferase [Saccharophagus degradans
           2-40]
          Length = 722

 Score = 35.8 bits (81), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 80/204 (39%), Gaps = 25/204 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R + +   V     GS L   G+T  L  +TL    + ++   +   +  
Sbjct: 327 RIDGRDSKTVRPLHVEVGVLPKVHGSALFTRGETQALVVSTLGSARDAQIIDALEGERKD 386

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G  +  +R IG  L    D        + +  +
Sbjct: 387 PFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGIGAVLPKEEDF----PYTMRVVSE 442

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 LK  VA I+ G++    G+ +
Sbjct: 443 ITESNGSSSMASVCGASLALMDA-------------GVPLKAPVAGIAMGLVKEDNGFAV 489

Query: 175 V-DLDYGEDSTIDVDANFVMTDSG 197
           + D+   ED   D+D     T  G
Sbjct: 490 LTDILGDEDHLGDMDFKVAGTADG 513


>gi|327482021|gb|AEA85331.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri
           DSM 4166]
          Length = 701

 Score = 35.8 bits (81), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 8/172 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLAIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G  +  +R +   L S  +        I +  +
Sbjct: 376 AFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPSADEF----PYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A++ GA +AL D    M+       +  V +G   A+   +L
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDIL 483


>gi|284108781|ref|ZP_06386446.1| polyribonucleotide nucleotidyltransferase [Candidatus Poribacteria
           sp. WGA-A3]
 gi|283829855|gb|EFC34146.1| polyribonucleotide nucleotidyltransferase [Candidatus Poribacteria
           sp. WGA-A3]
          Length = 700

 Score = 35.8 bits (81), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 22/151 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPM----WI 51
           +R  GR  + +R I+    +     GS L   G+T  L   TL     E+++      + 
Sbjct: 311 VRADGRGASDIRPITCETSILPRTHGSALFTRGETQSLAVVTLGTSDDEQRIDALEGEYF 370

Query: 52  RNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQ--RMIGRALRSVVDLSALGS 109
           RN         Y   P S G     EA   R  GR +E+   ++  RAL+SV+       
Sbjct: 371 RN-----FMLHYNFPPFSVG-----EARPLRSPGR-REVGHGKLAERALKSVLPDKEAFP 419

Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDC 140
             I I  D+++++G +  A + G  +A+ D 
Sbjct: 420 YTIRIVSDILESNGSSSMATVCGGTLAMMDA 450


>gi|146308619|ref|YP_001189084.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina
           ymp]
 gi|145576820|gb|ABP86352.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas mendocina
           ymp]
          Length = 725

 Score = 35.8 bits (81), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 14/175 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R + +   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 340 RIDGRDTRTVRPLKIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 399

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R + +++         I +
Sbjct: 400 PFMLHYNFPPFSVGE-------CGRMGGAGRREIGHGRLARRGVAAMLPKDDEFPYTIRV 452

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             ++ +++G +  A++ GA +AL D    M+       +  VL+G   A+   +L
Sbjct: 453 VSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGEKFAVLTDIL 507


>gi|167772649|ref|ZP_02444702.1| hypothetical protein ANACOL_04030 [Anaerotruncus colihominis DSM
           17241]
 gi|167665127|gb|EDS09257.1| hypothetical protein ANACOL_04030 [Anaerotruncus colihominis DSM
           17241]
          Length = 706

 Score = 35.8 bits (81), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 82/210 (39%), Gaps = 37/210 (17%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR+ +++R ++    +     GS +   G T +LT ATL    E +    I + +  
Sbjct: 315 RVDGRKMDEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTVATLGTISEAQKLDGIDDQEQK 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVDLSALGSRQ 111
                Y     S G     E    R  GR     R IG      RAL  V+         
Sbjct: 375 RYIHHYNFPSYSVG-----ETRPSRGPGR-----REIGHGALAERALEPVIPPVEEFPYT 424

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
           I +  +V+ ++G T   +I G+ +AL D                 +K  VA ISCG++  
Sbjct: 425 IRLVSEVLSSNGSTSQGSICGSTLALMDA-------------GVPIKRPVAGISCGLITE 471

Query: 172 ----YPIVDLDYGEDSTIDVDANFVMTDSG 197
                 +VD+   ED   D+D     T+ G
Sbjct: 472 GDRWMTMVDIQGLEDFFGDMDFKVGGTEKG 501


>gi|242047540|ref|XP_002461516.1| hypothetical protein SORBIDRAFT_02g003900 [Sorghum bicolor]
 gi|241924893|gb|EER98037.1| hypothetical protein SORBIDRAFT_02g003900 [Sorghum bicolor]
          Length = 877

 Score = 35.8 bits (81), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 81/211 (38%), Gaps = 32/211 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R  GR   ++R I+    +   A GS L   G+T  L   TL      +++   +     
Sbjct: 424 RSDGRSPWELRPINSQCGLLPRAHGSALFTRGETQSLAVVTLGGYQMAQRIDNLVDTEDS 483

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P   G   +  A S R+ G       +  RAL  ++         I ++ 
Sbjct: 484 KSFYLQYSFPPSCVGEVGRIGAPSRREIGHGM----LAERALEPILPPEEDFPYTIRVES 539

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------ 170
            + +++G +  A++ G  +AL D                 +K  VA I+ G++       
Sbjct: 540 TITESNGSSSMASVCGGCLALQDA-------------GVPIKFPVAGIAMGLVLDTQEFG 586

Query: 171 --GYPIV--DLDYGEDSTIDVDANFVMTDSG 197
             G P++  D+   ED++ D+D      +SG
Sbjct: 587 GDGSPLILSDITGAEDASGDMDLKIAGNESG 617


>gi|149193793|ref|ZP_01870891.1| polynucleotide phosphorylase/polyadenylase [Caminibacter
           mediatlanticus TB-2]
 gi|149135746|gb|EDM24224.1| polynucleotide phosphorylase/polyadenylase [Caminibacter
           mediatlanticus TB-2]
          Length = 725

 Score = 35.8 bits (81), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 12/143 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWI--RNT 54
           +R  GR+ +++R IS+   V   A GSCL   G T  L  AT    ++ +V   +  +  
Sbjct: 341 IRADGRKLDEIRPISIETNVLPRAHGSCLFTRGQTQALAVATRGGDMDAQVYANLTDKEE 400

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           K       Y     + G  V+    S R+ G       +  RA+  ++D     + +++ 
Sbjct: 401 KLEKFMLHYNFPAFAVGEAVRLGPPSRRELGHGN----LAKRAIEPLLDPEFDETVRVV- 455

Query: 115 DCDVIQADGGTRTAAITGAWVAL 137
             ++++++G +  A I  + +AL
Sbjct: 456 -SEILESNGSSSMATICASSIAL 477


>gi|57168155|ref|ZP_00367294.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter
           coli RM2228]
 gi|57020529|gb|EAL57198.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter
           coli RM2228]
          Length = 719

 Score = 35.8 bits (81), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 4/138 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWI 59
           R  GR  N++R I++   +   A GSCL   G T  L  ATL  E    M    T+   I
Sbjct: 336 RADGRNLNEVRPIAIETNILPNAHGSCLFTRGQTQALVVATLGSENDAQMVDVLTEKNPI 395

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              + +     G  V   +     G R      +  RAL   +D +     +++   +++
Sbjct: 396 NERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSIDENYPYIIRLV--SEIL 453

Query: 120 QADGGTRTAAITGAWVAL 137
           +++G +  A + G  +AL
Sbjct: 454 ESNGSSSMATVCGGSLAL 471


>gi|282848815|ref|ZP_06258208.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula ATCC
           17745]
 gi|282581469|gb|EFB86859.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula ATCC
           17745]
          Length = 689

 Score = 35.8 bits (81), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 35/232 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T  ++K A G+ +V +GDT +L TAT  ++     ++     +T +Y       G LP  
Sbjct: 17  TGELAKQAGGAVMVGYGDTRVLVTATGSKEA----KDIDFFPLTVDYEEKMYAVGRLP-- 70

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KREA   R    +    R+I R +R + +        ++     +  D       
Sbjct: 71  -GGFIKREA---RPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPAICG 126

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           + GA  AL               +S V   G +A +  G + G  +V+    +    D++
Sbjct: 127 MIGASAAL--------------SISDVPWNGPIAGVRMGRINGEFVVNPTKAQLEETDLN 172

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                T    I+ V+G AE     +D    ++  A + I  ++  Q+D+ + 
Sbjct: 173 IVVAGTKDA-ILMVEGGAEE--VPEDIILEVIMAAHEEIKKIVAFQEDMTAK 221


>gi|156845783|ref|XP_001645781.1| hypothetical protein Kpol_1010p39 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116449|gb|EDO17923.1| hypothetical protein Kpol_1010p39 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 246

 Score = 35.8 bits (81), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 83/186 (44%), Gaps = 16/186 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           +RL GR+ N++R    +     +A +GS  ++ G+  ++T     ++ P+ +R+      
Sbjct: 12  LRLDGRRWNELRRFECSINTHAHASDGSSYLEQGNNKIVTLVKGPQE-PI-LRSQLDATK 69

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
            +    +  +  ++++R   S +   R  E+Q  + R     V L       I I+  V+
Sbjct: 70  ASLNITVNITKFSKMERSKSSHKNERRVLEMQTALVRTFEKNVMLHLYPRTLIDIEIHVL 129

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           Q DGG   + I    +AL D    M D             +V+AIS G+    P++D++ 
Sbjct: 130 QQDGGILGSLINSITLALIDSGIAMYD-------------YVSAISIGLYDTTPLLDVNT 176

Query: 180 GEDSTI 185
            E++ +
Sbjct: 177 LEENAM 182


>gi|146283626|ref|YP_001173779.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri
           A1501]
 gi|187611273|sp|A4VPN6|PNP_PSEU5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145571831|gb|ABP80937.1| polyribonucleotide nucleotidyltransferase [Pseudomonas stutzeri
           A1501]
          Length = 701

 Score = 35.4 bits (80), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 8/172 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLAIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G  +  +R +   L S  +        I +  +
Sbjct: 376 AFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPSADEF----PYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A++ GA +AL D    M+       +  V +G   A+   +L
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDIL 483


>gi|326794274|ref|YP_004312094.1| polyribonucleotide nucleotidyltransferase [Marinomonas mediterranea
           MMB-1]
 gi|326545038|gb|ADZ90258.1| Polyribonucleotide nucleotidyltransferase [Marinomonas mediterranea
           MMB-1]
          Length = 702

 Score = 35.4 bits (80), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 85/207 (41%), Gaps = 31/207 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I++   + K   GS L   G+T  + T TL    + ++   +      
Sbjct: 315 RIDGRDNQTVRPINVEVGLLKKTHGSSLFTRGETQAIATCTLGTSRDAQISDGLAGENKD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRS-QEI--QRMIGRALRSVVDLSALGSRQIII 114
                Y   P S G         GR GG   +EI   R+  R +++V+         I I
Sbjct: 375 SFMLHYNFPPYSVGE-------CGRMGGVGRREIGHGRLARRGVQAVLPSEDEFPYTIRI 427

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---G 171
             ++ +++G +  A++ GA +++ D                 LK  VA I+ G++    G
Sbjct: 428 VSEITESNGSSSMASVCGASLSMMDA-------------GVPLKAPVAGIAMGLVKEDDG 474

Query: 172 YPIV-DLDYGEDSTIDVDANFVMTDSG 197
           + ++ D+   ED   D+D     T+ G
Sbjct: 475 FAVLTDILGDEDHLGDMDFKVAGTEEG 501


>gi|254563353|ref|YP_003070448.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           extorquens DM4]
 gi|254270631|emb|CAX26635.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           extorquens DM4]
          Length = 748

 Score = 35.4 bits (80), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 16/176 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I     V   A GS L   G+T  L  ATL    +E+    +  T   
Sbjct: 316 RIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTGEDEQFIDALEGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQG--GRSQEI--QRMIGRALRSVVDLSALGSRQII 113
                Y   P S G        +GR G  GR +EI   ++  RA+R V+  +      I 
Sbjct: 376 RFLLHYNFPPYSVGE-------TGRMGSPGR-REIGHGKLAWRAIRPVLPPAHEFPYTIR 427

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           +  ++ +++G +  A++ G  ++L D    +        +  +L+G   A+   +L
Sbjct: 428 VVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLSDIL 483


>gi|218532284|ref|YP_002423100.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           chloromethanicum CM4]
 gi|240140844|ref|YP_002965324.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           extorquens AM1]
 gi|254782727|sp|B7KN55|PNP_METC4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096722|sp|A9W8P8|PNP_METEP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218524587|gb|ACK85172.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium
           chloromethanicum CM4]
 gi|240010821|gb|ACS42047.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           extorquens AM1]
          Length = 745

 Score = 35.4 bits (80), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 16/176 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I     V   A GS L   G+T  L  ATL    +E+    +  T   
Sbjct: 316 RIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTGEDEQFIDALEGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQG--GRSQEI--QRMIGRALRSVVDLSALGSRQII 113
                Y   P S G        +GR G  GR +EI   ++  RA+R V+  +      I 
Sbjct: 376 RFLLHYNFPPYSVGE-------TGRMGSPGR-REIGHGKLAWRAIRPVLPPAHEFPYTIR 427

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           +  ++ +++G +  A++ G  ++L D    +        +  +L+G   A+   +L
Sbjct: 428 VVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLSDIL 483


>gi|225715750|gb|ACO13721.1| Exosome complex exonuclease MTR3 [Esox lucius]
          Length = 277

 Score = 35.4 bits (80), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 14/151 (9%)

Query: 2   RLSGRQENQM--REISLTRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTK 55
           R+ GRQ  Q+  R + +   +   A+GS  ++ G+T L+        +E K      + K
Sbjct: 36  RVDGRQRGQVDVRSVFVRCGLISQAKGSAYIEAGNTKLICCVYGPREMERKDET---DMK 92

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
            G +  +    P S      RE  S  QG   +++  M+  +LR  V L      QI ++
Sbjct: 93  SGRLMTDMRFAPFSC-----RERGSWIQGSDEKDLSLMLLESLRPGVCLHKYPRSQIEVN 147

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMED 146
             V++ DG     A+T A +AL D    M D
Sbjct: 148 VMVLENDGSVLAHAVTCASMALADAGIEMYD 178


>gi|307721696|ref|YP_003892836.1| polyribonucleotide nucleotidyltransferase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979789|gb|ADN09824.1| polyribonucleotide nucleotidyltransferase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 726

 Score = 35.4 bits (80), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 9/141 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGW 58
           +R  GR+  ++R I++   V   A  SCL   G T  L   T+   +   M+   T  G 
Sbjct: 344 VRADGRKLTEIRPITIDTNVLPAAHSSCLFTRGQTQALVVLTMGGPKDAQMFEGLTDEGT 403

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116
               + +     G  V     S   G + +E+    +  RAL  ++DL     R +    
Sbjct: 404 QNENFMVHYNFPGFSVGE--ASPVMGTKRRELGHGNLAKRALEPIIDLDGQTVRLV---S 458

Query: 117 DVIQADGGTRTAAITGAWVAL 137
           ++++++G +  A + G ++AL
Sbjct: 459 EILESNGSSSMATVCGGYMAL 479


>gi|46578918|ref|YP_009726.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120603481|ref|YP_967881.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio vulgaris
           DP4]
 gi|81567122|sp|Q72ER6|PNP_DESVH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610296|sp|A1VG88|PNP_DESVV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|46448330|gb|AAS94985.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120563710|gb|ABM29454.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris
           DP4]
 gi|311232776|gb|ADP85630.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris
           RCH1]
          Length = 760

 Score = 35.4 bits (80), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 9/143 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I +   +   A GS L   G+T  L  ATL         ++  G +T 
Sbjct: 322 RIDGRDTTTVRPILIEAGILPRAHGSALFARGETKSLVVATLGSSTDEQRMDSLTGDVTK 381

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G  VK   VS R+ G       +  +ALR ++ L       + +  +
Sbjct: 382 RFMLHYNFAPYCVGE-VKPVRVSRREIGHGA----LAEKALRPILPLGEDFPFTLRVVAE 436

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
            ++++G +  AA+ G  ++L D 
Sbjct: 437 TMESNGSSSMAAVCGGCLSLMDA 459


>gi|237738958|ref|ZP_04569439.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           2_1_31]
 gi|229423558|gb|EEO38605.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           2_1_31]
          Length = 699

 Score = 35.4 bits (80), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR   ++R +     V     GS L   G+T  L   TL    +E++   +    + 
Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKADEQLIDDLEKEYYK 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  V R    GR   R      +  RALR V+         I +  +
Sbjct: 384 KFYLHYNFPPYSVG-EVGRMGSPGR---RELGHGSLAERALRYVIPSEEEFPYTIRVVSE 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A+I G  ++L                   +K HVA I+ G++
Sbjct: 440 ITESNGSSSQASICGGSLSLMSA-------------GVPIKEHVAGIAMGLI 478


>gi|262066017|ref|ZP_06025629.1| polyribonucleotide nucleotidyltransferase [Fusobacterium
           periodonticum ATCC 33693]
 gi|291380267|gb|EFE87785.1| polyribonucleotide nucleotidyltransferase [Fusobacterium
           periodonticum ATCC 33693]
          Length = 699

 Score = 35.4 bits (80), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR   ++R +     V     GS L   G+T  L   TL    +E++   +    + 
Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKSDEQLIDDLEKEYYK 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  V R    GR   R      +  RALR V+         I +  +
Sbjct: 384 KFYLHYNFPPYSVG-EVGRMGSPGR---RELGHGSLAERALRYVIPSEEEFPYTIRVVSE 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A+I G  ++L                   +K HVA I+ G++
Sbjct: 440 ITESNGSSSQASICGGSLSLMSA-------------GVPIKEHVAGIAMGLI 478


>gi|187251573|ref|YP_001876055.1| polyribonucleotide nucleotidyltransferase [Elusimicrobium minutum
           Pei191]
 gi|257096702|sp|B2KDX2|PNP_ELUMP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|186971733|gb|ACC98718.1| Polyribonucleotide nucleotidyltransferase [Elusimicrobium minutum
           Pei191]
          Length = 698

 Score = 35.4 bits (80), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 91/223 (40%), Gaps = 33/223 (14%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTAT--------LEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           V+K A+GS + + GDT +L TA         + + VP+ +   +  +     G +P   G
Sbjct: 25  VAKQADGSVIARMGDTMVLATAVSDKVQKPGISDFVPLTVNYKERTYAA---GKIP---G 78

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
              KRE+   R   +     R+I R+LR +    +  + +  +   V+ ADG   T    
Sbjct: 79  GFFKRES---RASKKETLASRIIDRSLRPL--FPSGYTCETNVTAMVLSADGVYDT---- 129

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
                  + L  M   +     S      VAA+  G L G  IV+    E  + D+D   
Sbjct: 130 -------EVLAVMASSTALIISSIPFTTPVAAVRIGRLNGNFIVNPTLEEQKSCDMDLII 182

Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
             +  G ++ V+G A+    S++     L  AK  I  L K Q
Sbjct: 183 SGSLEGMLM-VEGGAKEV--SEEDVIKALETAKPAIDILCKAQ 222


>gi|163734274|ref|ZP_02141714.1| polyribonucleotide nucleotidyltransferase [Roseobacter litoralis
           Och 149]
 gi|161392282|gb|EDQ16611.1| polyribonucleotide nucleotidyltransferase [Roseobacter litoralis
           Och 149]
          Length = 711

 Score = 35.4 bits (80), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 87/208 (41%), Gaps = 32/208 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR+ +++R+I     +     GS L   G+T  L   TL     E+ +     N K 
Sbjct: 318 RIDGRKTDEIRDIVSETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377

Query: 57  GWITAEYGMLPRSTGN--RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
            ++   Y   P S G   RV      G  G R     ++  RAL++V+  +      + +
Sbjct: 378 NFLL-HYNFPPYSVGEAGRV------GPPGRREIGHGKLAWRALQAVLPAATDFPYTVRV 430

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---- 170
             ++ +++G +  A++ G  +++ D                 LK  VA ++ G++     
Sbjct: 431 VSEITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLILEEDG 477

Query: 171 GYPIV-DLDYGEDSTIDVDANFVMTDSG 197
            Y I+ D+   ED   D+D     T++G
Sbjct: 478 SYAILSDILGDEDHLGDMDFKVAGTEAG 505


>gi|222110082|ref|YP_002552346.1| polynucleotide phosphorylase/polyadenylase [Acidovorax ebreus TPSY]
 gi|254782718|sp|B9MEL0|PNP_DIAST RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|221729526|gb|ACM32346.1| polynucleotide phosphorylase, phosphorolytic RNA-binding
           [Acidovorax ebreus TPSY]
          Length = 727

 Score = 35.4 bits (80), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 23/173 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R I +   V     GS L   G+T  L  +TL      +++       + 
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFED 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            +I   Y M P +TG   +  +   R+ G      R+  RAL + +         I +  
Sbjct: 377 RFIF-HYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVACLPSKDEFPYTIRVVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           ++ +++G +  A++ G  ++L D    M             K HVA I+ G++
Sbjct: 432 EITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLI 471


>gi|163853425|ref|YP_001641468.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           extorquens PA1]
 gi|163665030|gb|ABY32397.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium
           extorquens PA1]
          Length = 752

 Score = 35.4 bits (80), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 16/176 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I     V   A GS L   G+T  L  ATL    +E+    +  T   
Sbjct: 323 RIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTGEDEQFIDALEGTYKE 382

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQG--GRSQEI--QRMIGRALRSVVDLSALGSRQII 113
                Y   P S G        +GR G  GR +EI   ++  RA+R V+  +      I 
Sbjct: 383 RFLLHYNFPPYSVGE-------TGRMGSPGR-REIGHGKLAWRAIRPVLPPAHEFPYTIR 434

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           +  ++ +++G +  A++ G  ++L D    +        +  +L+G   A+   +L
Sbjct: 435 VVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLSDIL 490


>gi|89070994|ref|ZP_01158217.1| polyribonucleotide nucleotidyltransferase [Oceanicola granulosus
           HTCC2516]
 gi|89043457|gb|EAR49672.1| polyribonucleotide nucleotidyltransferase [Oceanicola granulosus
           HTCC2516]
          Length = 710

 Score = 35.4 bits (80), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 30/207 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +++R I    ++     GS L   G+T  L   TL       I +  HG   +
Sbjct: 318 RIDGRALDEVRPIVSETQILPRTHGSALFTRGETQALVVTTLGTGDDEQIIDALHGNFRS 377

Query: 62  E----YGMLPRSTGN--RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                Y   P S G   RV      G  G R     ++  RAL++V+  +      I + 
Sbjct: 378 NFLLHYNFPPYSVGEAGRV------GPPGRREIGHGKLAWRALQAVLPPATDFPYTIRLV 431

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----G 171
            ++ +++G +  A++ G  +++ D                 LK  VA ++ G++      
Sbjct: 432 SEITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLVLEDDGS 478

Query: 172 YPIV-DLDYGEDSTIDVDANFVMTDSG 197
           Y I+ D+   ED   D+D     T++G
Sbjct: 479 YGILTDILGDEDHLGDMDFKVAGTENG 505


>gi|296120652|ref|YP_003628430.1| polyribonucleotide nucleotidyltransferase [Planctomyces limnophilus
           DSM 3776]
 gi|296012992|gb|ADG66231.1| Polyribonucleotide nucleotidyltransferase [Planctomyces limnophilus
           DSM 3776]
          Length = 703

 Score = 35.4 bits (80), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 10/145 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTK 55
           +RL GR+ + +R +S    V     GS L   G+T  L T TL      ++V        
Sbjct: 314 VRLDGRKHDDLRAVSCAASVLPRVHGSSLFTRGETQSLATVTLGTIRDVQRVEGLFGEEA 373

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++  +Y   P S G          R+ G     +R +   L S           I + 
Sbjct: 374 KAFML-DYYFPPYSVGECKPLRGPGRRELGHGALAERSVASVLPSPEKF----PYTIRVI 428

Query: 116 CDVIQADGGTRTAAITGAWVALHDC 140
            D+++++G +  A++  A +AL D 
Sbjct: 429 SDILESNGSSSMASVCSATLALMDA 453


>gi|254471003|ref|ZP_05084406.1| polyribonucleotide nucleotidyltransferase protein [Pseudovibrio sp.
           JE062]
 gi|211960145|gb|EEA95342.1| polyribonucleotide nucleotidyltransferase protein [Pseudovibrio sp.
           JE062]
          Length = 712

 Score = 35.4 bits (80), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  + +R I     +   A GS L   G+T  +  ATL    +E+    +  TK  
Sbjct: 315 RIDGRDLSTVRSIVSEVGMLPRAHGSSLFTRGETQAMVVATLGTGEDEQFIDLLEGTKKA 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G  +   R +   L +  D        + +  +
Sbjct: 375 TFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVNPMLPAHHDF----PYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A++ GA ++L D                 LK  VA I+ G++
Sbjct: 431 ITESNGSSSMASVCGASLSLMDA-------------GVPLKAPVAGIAMGLI 469


>gi|85712994|ref|ZP_01044032.1| Polynucleotide phosphorylase [Idiomarina baltica OS145]
 gi|85693163|gb|EAQ31123.1| Polynucleotide phosphorylase [Idiomarina baltica OS145]
          Length = 713

 Score = 35.4 bits (80), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 8/143 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  + +R IS+   V     GS L   G+T  L TATL    + ++   +  T   
Sbjct: 314 RIDGRDPDMVRAISVATGVLPRTHGSALFTRGETQALVTATLGTDRDAQMIDELTGTSTS 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      A   R+ G      R+  R +++V+         + +  +
Sbjct: 374 RFLLHYNFPPYCVGETGMVGAPKRREIGHG----RLAKRGIQAVMPSHEEFPYTVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           + +++G +  A++ G+ +AL D 
Sbjct: 430 ITESNGSSSMASVCGSSLALMDA 452


>gi|294793588|ref|ZP_06758725.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 3_1_44]
 gi|294455158|gb|EFG23530.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 3_1_44]
          Length = 689

 Score = 35.4 bits (80), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 35/232 (15%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T  ++K A G+ +V +GDT +L TAT  ++     ++     +T +Y       G LP  
Sbjct: 17  TGELAKQAGGAVMVGYGDTRVLVTATGSKEA----KDIDFFPLTVDYEEKMYAVGRLP-- 70

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KREA   R    +    R+I R +R + +        ++     +  D       
Sbjct: 71  -GGFIKREA---RPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPAICG 126

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVL-KGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           + GA  AL               +S V   G +A +  G + G  +V+    +    D++
Sbjct: 127 MIGASAAL--------------SISDVPWNGPIAGVRMGRINGEFVVNPTKSQLEETDLN 172

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                T    I+ V+G AE     +D    ++  A + I  ++  Q+D+ + 
Sbjct: 173 IVVAGTKDA-ILMVEGGAEE--VPEDIILEVIMAAHEEIKKIVAFQEDMTAK 221


>gi|83313216|ref|YP_423480.1| polynucleotide phosphorylase/polyadenylase [Magnetospirillum
           magneticum AMB-1]
 gi|123754041|sp|Q2VZQ4|PNP_MAGMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|82948057|dbj|BAE52921.1| Polyribonucleotide nucleotidyltransferase [Magnetospirillum
           magneticum AMB-1]
          Length = 720

 Score = 35.4 bits (80), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 16/148 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR    +R I +   V   A GS L   G+T  L  ATL    +E++   +     
Sbjct: 315 VRIDGRDTKTVRAIEVEVGVLPRAHGSALFTRGETQALVVATLGTGQDEQIIDQLAGEYR 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQG--GRSQEI--QRMIGRALRSVVDLSALGSRQI 112
                 Y   P S G        +GR G  GR +EI   ++  RA+R  +         +
Sbjct: 375 EHFMLHYNFPPYSVGE-------AGRMGSPGR-REIGHGKLAWRAMRPCLPAKESFPYTM 426

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC 140
            +  ++ +++G +  A++ G+ +AL D 
Sbjct: 427 RVVSEITESNGSSSMASVCGSSLALMDA 454


>gi|319900855|ref|YP_004160583.1| polyribonucleotide nucleotidyltransferase [Bacteroides helcogenes P
           36-108]
 gi|319415886|gb|ADV42997.1| polyribonucleotide nucleotidyltransferase [Bacteroides helcogenes P
           36-108]
          Length = 735

 Score = 35.4 bits (80), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 10/143 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGW- 58
           RL GR+  ++R I           GS +   G+T  L+T TL  K+   I +   +HG  
Sbjct: 319 RLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+    + A     + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKG--QIPADYPYVVRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           +++++G +  A +    +AL D 
Sbjct: 433 ILESNGSSSMATVCAGTLALMDA 455


>gi|260495072|ref|ZP_05815201.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_33]
 gi|260197515|gb|EEW95033.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_33]
          Length = 703

 Score = 35.4 bits (80), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 97/254 (38%), Gaps = 35/254 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR   ++R +     V     GS L   G+T  L   TL    +E++   +    + 
Sbjct: 328 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 387

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  V R    GR   R      +  RALR V+         I +  +
Sbjct: 388 KFYLHYNFPPYSVG-EVGRMGSPGR---RELGHGSLAERALRYVIPTEEEFPYTIRVVSE 443

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  ++L                   +K HVA I+ G++        
Sbjct: 444 ITESNGSSSQASICGGSLSLMAA-------------GVPIKEHVAGIAMGLIKEGEEFTV 490

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHI-----VEVQGSAE---RATFSQDH--FFAMLNLA 223
           + D+   ED   D+D     T SG       +++ G  E   R   +Q H     +L L 
Sbjct: 491 LTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHQARLEILELM 550

Query: 224 KDRIADLIKLQKDV 237
            + I+   KL+ +V
Sbjct: 551 NNTISKPAKLKSNV 564


>gi|94501380|ref|ZP_01307900.1| polyribonucleotide nucleotidyltransferase [Oceanobacter sp. RED65]
 gi|94426493|gb|EAT11481.1| polyribonucleotide nucleotidyltransferase [Oceanobacter sp. RED65]
          Length = 698

 Score = 35.4 bits (80), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 71/172 (41%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R++++   V K   GS L   G+T  + T TL    + +V  ++   +  
Sbjct: 319 RIDGRDNKTVRDLNIQTDVLKGTHGSALFTRGETQSIGTVTLGSTRDAQVVEFLHEVQKD 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G  +  +R +   + S+ D        + +  +
Sbjct: 379 NFLFHYNFPPYSVGECGRMGAPGRREVGHGRLARRGVQAMMPSLEDF----PYTVRVVSE 434

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A++  A +AL D                 +K  VA I+ G++
Sbjct: 435 ITESNGSSSMASVCSASLALMDA-------------GVPIKAPVAGIAMGLV 473


>gi|299133369|ref|ZP_07026564.1| polyribonucleotide nucleotidyltransferase [Afipia sp. 1NLS2]
 gi|298593506|gb|EFI53706.1| polyribonucleotide nucleotidyltransferase [Afipia sp. 1NLS2]
          Length = 714

 Score = 35.4 bits (80), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 88/229 (38%), Gaps = 18/229 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR    +R I     V   A GS L   G+T  L   TL    +E+    +  T  
Sbjct: 315 LRIDGRDVKTVRPIVAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDALSGTYK 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R     ++  RA+  V+         + +  
Sbjct: 375 ETFLLHYNFPPFSVGETGR----IGSPGRREIGHGKLAWRAIHPVLPAHHEFPYTLRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++ +++G +  A + G+ +AL D    ++  +    +  +L+G   A+   +L       
Sbjct: 431 EITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRFAVLSDILG------ 484

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
               ED   D+D     TD G +  +Q   + A  +++     L  AKD
Sbjct: 485 ---DEDHLGDMDFKVAGTDKG-VTSLQMDIKIAGITEEIMKIALTQAKD 529


>gi|294784020|ref|ZP_06749342.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           1_1_41FAA]
 gi|294479832|gb|EFG27611.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           1_1_41FAA]
          Length = 703

 Score = 35.4 bits (80), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR   ++R +     V     GS L   G+T  L   TL    +E++   +    + 
Sbjct: 328 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKADEQLIDDLEKEYYK 387

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  V R    GR   R      +  RALR V+         I +  +
Sbjct: 388 KFYLHYNFPPYSVG-EVGRMGSPGR---RELGHGSLAERALRYVIPSEEEFPYTIRVVSE 443

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A+I G  ++L                   +K HVA I+ G++
Sbjct: 444 ITESNGSSSQASICGGSLSLMSA-------------GVPIKEHVAGIAMGLI 482


>gi|328953964|ref|YP_004371298.1| Polyribonucleotide nucleotidyltransferase [Desulfobacca acetoxidans
           DSM 11109]
 gi|328454288|gb|AEB10117.1| Polyribonucleotide nucleotidyltransferase [Desulfobacca acetoxidans
           DSM 11109]
          Length = 711

 Score = 35.4 bits (80), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 10/144 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R IS    +     GS L   G+T  L  ATL     E+++     +T  
Sbjct: 324 RIDGRSYTDIRPISCEVGLLSRTHGSALFSRGETQALAVATLGTVSDEQRIETLTGDTFK 383

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++   Y   P S G        S R+ G     +R + R L    +        I +  
Sbjct: 384 AFML-HYNFPPYSVGETRMLRGPSRREIGHGALAERALSRVLPQPEEF----PYTIRVVS 438

Query: 117 DVIQADGGTRTAAITGAWVALHDC 140
           +++ ++G +  A + G  +A+ D 
Sbjct: 439 EILSSNGSSSMATVCGGSLAMMDA 462


>gi|239816487|ref|YP_002945397.1| polynucleotide phosphorylase/polyadenylase [Variovorax paradoxus
           S110]
 gi|259534173|sp|C5CT24|PNP_VARPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|239803064|gb|ACS20131.1| Polyribonucleotide nucleotidyltransferase [Variovorax paradoxus
           S110]
          Length = 772

 Score = 35.4 bits (80), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGW-- 58
           R+ GR    +R I +   V     GS L   G+T  L   TL  E+    I      +  
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQGLVVTTLGTERDAQRIDALAGEYED 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL +V+         I +  +
Sbjct: 377 RFLFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVAVLPTKEEFPYTIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A++ G  +++ D    M             K HVA I+ G++
Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLI 471


>gi|121593373|ref|YP_985269.1| polynucleotide phosphorylase/polyadenylase [Acidovorax sp. JS42]
 gi|187470958|sp|A1W4L8|PNP_ACISJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|120605453|gb|ABM41193.1| 3' exoribonuclease [Acidovorax sp. JS42]
          Length = 727

 Score = 35.4 bits (80), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 23/173 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R I +   V     GS L   G+T  L  +TL      +++       + 
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFED 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            +I   Y M P +TG   +  +   R+ G      R+  RAL + +         I +  
Sbjct: 377 RFIF-HYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVACLPSKDEFPYTIRVVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           ++ +++G +  A++ G  ++L D    M             K HVA I+ G++
Sbjct: 432 EITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLI 471


>gi|289766578|ref|ZP_06525956.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D11]
 gi|289718133|gb|EFD82145.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D11]
          Length = 703

 Score = 35.4 bits (80), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR   ++R +     V     GS L   G+T  L   TL    +E++   +    + 
Sbjct: 328 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 387

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  V R    GR   R      +  RALR V+         I +  +
Sbjct: 388 KFYLHYNFPPYSVG-EVGRMGSPGR---RELGHGSLAERALRYVIPTEEEFPYTIRVVSE 443

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A+I G  ++L                   +K HVA I+ G++
Sbjct: 444 ITESNGSSSQASICGGSLSLMAA-------------GVPIKEHVAGIAMGLI 482


>gi|189208598|ref|XP_001940632.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187976725|gb|EDU43351.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 250

 Score = 35.4 bits (80), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 61/153 (39%), Gaps = 16/153 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------ 54
           +RL GR+ N++R I         A+GS  ++ G+T +L + T     P   R +      
Sbjct: 13  LRLDGRRWNELRRIHAQISTQAAADGSSYLEQGNTKILVSVT----GPHEGRQSGQRGGA 68

Query: 55  -KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K   +  E      S   R KR     +   R+ E++  I  A   V+ L       I 
Sbjct: 69  DKQAKVEVEINFAGFSGVERRKR-----KSDKRTSEMEHCIRSAFEGVLLLHLYPHSTIT 123

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMED 146
           ++  ++  DG    A I  + +AL D    M D
Sbjct: 124 LNIHIVSQDGSLLAACINASTLALIDAGIPMTD 156


>gi|37528344|ref|NP_931689.1| polynucleotide phosphorylase/polyadenylase [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|81418115|sp|Q7MYZ0|PNP_PHOLL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|36787782|emb|CAE16897.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) (PNPase) (CAP87K) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 709

 Score = 35.4 bits (80), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 8/143 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +    I +   G  T 
Sbjct: 315 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 375 RFLLHYNFPPYSVGETGMMGSPKRREIGHG----RLAKRGVAAVMPKANEFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           + +++G +  A++ GA +AL D 
Sbjct: 431 ITESNGSSSMASVCGASLALMDA 453


>gi|319794672|ref|YP_004156312.1| polyribonucleotide nucleotidyltransferase [Variovorax paradoxus
           EPS]
 gi|315597135|gb|ADU38201.1| polyribonucleotide nucleotidyltransferase [Variovorax paradoxus
           EPS]
          Length = 775

 Score = 35.4 bits (80), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGW-- 58
           R+ GR    +R I +   V     GS L   G+T  L   TL  E+    I      +  
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVITTLGTERDAQRIDALAGEYED 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL +V+         + +  +
Sbjct: 377 RFLFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVAVLPTKEEFPYTVRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A++ G  +++ D    M             K HVA I+ G++
Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLI 471


>gi|124027457|ref|YP_001012777.1| exosome complex RNA-binding protein Rrp42 [Hyperthermus butylicus
           DSM 5456]
 gi|123978151|gb|ABM80432.1| RNase PH-related exoribonuclease [Hyperthermus butylicus DSM 5456]
          Length = 328

 Score = 35.4 bits (80), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 84/223 (37%), Gaps = 26/223 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-IRNTKHGWI 59
           +RL GR+ ++ R + +T      AEGS LVK G T +L     +   P     N     +
Sbjct: 27  VRLDGRKLDETRPVEITPGYIDRAEGSALVKLGQTVVLAGVKTDIVAPFPDTPNEAVLVV 86

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSAL----GSR--Q 111
            AE+  L   T          G     + E+ R+I R+LR +  V L  L    G    +
Sbjct: 87  HAEFVPLASPTFE-------PGPPDENAIELARVIDRSLREIKAVALDKLVLEPGKHVWR 139

Query: 112 IIIDCDVIQADGG---------TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA 162
           + +D  ++  DG                T    A+     +  D S KF     +   V 
Sbjct: 140 LYVDLYILNHDGNLFDASMLAAMAALMTTRLPAAVKTEDGYTVDRS-KFTGLVPVNHKVV 198

Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
            ++   L    IVD  Y E+   D      ++D G I  +Q +
Sbjct: 199 TVTIAKLSNRLIVDPTYEEEQVADTRLVVAVSDDGRIAGIQKT 241


>gi|54307819|ref|YP_128839.1| polynucleotide phosphorylase/polyadenylase [Photobacterium
           profundum SS9]
 gi|81400130|sp|Q6LUI8|PNP_PHOPR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|46912242|emb|CAG19037.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium
           profundum SS9]
          Length = 707

 Score = 35.4 bits (80), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 25/204 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL    + ++   I   K  
Sbjct: 314 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSIMGEKKD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G  +  +R I   + SV +        + +  +
Sbjct: 374 HFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVEEF----PYTVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIV- 175
           + +++G +  A++ G  +AL D                 +K  VA I+ G++  G   V 
Sbjct: 430 ITESNGSSSMASVCGTSLALMDA-------------GVPIKASVAGIAMGLVKEGDDFVV 476

Query: 176 --DLDYGEDSTIDVDANFVMTDSG 197
             D+   ED   D+D     TD G
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTDDG 500


>gi|221068616|ref|ZP_03544721.1| Polyribonucleotide nucleotidyltransferase [Comamonas testosteroni
           KF-1]
 gi|220713639|gb|EED69007.1| Polyribonucleotide nucleotidyltransferase [Comamonas testosteroni
           KF-1]
          Length = 747

 Score = 35.4 bits (80), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 23/173 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R I +   V     GS L   G+T  L  +TL      +K+       + 
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTERDAQKIDALAGEFED 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++   Y M P +TG   +  +   R+ G      R+  RAL + +         I +  
Sbjct: 377 RFLF-HYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALAACLPTKEEFPYTIRVVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           ++ +++G +  A++ G  +++ D    M             K HVA I+ G++
Sbjct: 432 EITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLI 471


>gi|256028665|ref|ZP_05442499.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium sp. D11]
          Length = 699

 Score = 35.0 bits (79), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR   ++R +     V     GS L   G+T  L   TL    +E++   +    + 
Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  V R    GR   R      +  RALR V+         I +  +
Sbjct: 384 KFYLHYNFPPYSVG-EVGRMGSPGR---RELGHGSLAERALRYVIPTEEEFPYTIRVVSE 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A+I G  ++L                   +K HVA I+ G++
Sbjct: 440 ITESNGSSSQASICGGSLSLMAA-------------GVPIKEHVAGIAMGLI 478


>gi|299530738|ref|ZP_07044153.1| polynucleotide phosphorylase/polyadenylase [Comamonas testosteroni
           S44]
 gi|298721254|gb|EFI62196.1| polynucleotide phosphorylase/polyadenylase [Comamonas testosteroni
           S44]
          Length = 747

 Score = 35.0 bits (79), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 23/173 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R I +   V     GS L   G+T  L  +TL      +K+       + 
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTERDAQKIDALAGEFED 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++   Y M P +TG   +  +   R+ G      R+  RAL + +         I +  
Sbjct: 377 RFLF-HYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALAACLPTKEEFPYTIRVVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           ++ +++G +  A++ G  +++ D    M             K HVA I+ G++
Sbjct: 432 EITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLI 471


>gi|264677193|ref|YP_003277099.1| 3' exoribonuclease [Comamonas testosteroni CNB-2]
 gi|262207705|gb|ACY31803.1| 3' exoribonuclease [Comamonas testosteroni CNB-2]
          Length = 747

 Score = 35.0 bits (79), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 23/173 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R I +   V     GS L   G+T  L  +TL      +K+       + 
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTERDAQKIDALAGEFED 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++   Y M P +TG   +  +   R+ G      R+  RAL + +         I +  
Sbjct: 377 RFLF-HYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALAACLPTKEEFPYTIRVVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           ++ +++G +  A++ G  +++ D    M             K HVA I+ G++
Sbjct: 432 EITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLI 471


>gi|138894789|ref|YP_001125242.1| polynucleotide phosphorylase/polyadenylase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196247587|ref|ZP_03146289.1| Polyribonucleotide nucleotidyltransferase [Geobacillus sp. G11MC16]
 gi|187610268|sp|A4IME3|PNP_GEOTN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|134266302|gb|ABO66497.1| Polynucleotide phosphorylase PNPase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196212371|gb|EDY07128.1| Polyribonucleotide nucleotidyltransferase [Geobacillus sp. G11MC16]
          Length = 722

 Score = 35.0 bits (79), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 17/128 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRS 69
           T  ++K A G+ LV++GDT +L+TAT   +     ++     +T  Y       G +P  
Sbjct: 21  TGELAKQANGAALVRYGDTVVLSTATASREA----KDVDFFPLTVNYEERLYAVGKIP-- 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KRE   GR   ++    R+I R +R +         Q++     +  D     AA
Sbjct: 75  -GGFIKRE---GRPSEKAILASRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCSPEVAA 130

Query: 130 ITGAWVAL 137
           + G+ VAL
Sbjct: 131 LIGSSVAL 138


>gi|329960360|ref|ZP_08298785.1| polyribonucleotide nucleotidyltransferase [Bacteroides fluxus YIT
           12057]
 gi|328532798|gb|EGF59580.1| polyribonucleotide nucleotidyltransferase [Bacteroides fluxus YIT
           12057]
          Length = 714

 Score = 35.0 bits (79), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 10/143 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGW- 58
           RL GR+  ++R I           GS +   G+T  L+T TL  K+   I +   +HG  
Sbjct: 319 RLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+    + A     + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKG--QIPADYPYVVRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           +++++G +  A +    +AL D 
Sbjct: 433 ILESNGSSSMATVCAGTLALMDA 455


>gi|291276965|ref|YP_003516737.1| polyribonucleotide nucleotidyltransferase [Helicobacter mustelae
           12198]
 gi|290964159|emb|CBG40004.1| polyribonucleotide nucleotidyltransferase [Helicobacter mustelae
           12198]
          Length = 693

 Score = 35.0 bits (79), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 13/146 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI- 59
           +R  GR+  ++R IS+   +  +A GS L   G T  L  ATL  +     R   +  I 
Sbjct: 316 IRADGRKTTEVRPISIETNILPFAHGSVLFTRGQTQSLVVATLGSENDAQTRENLNDSIP 375

Query: 60  -----TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                T  Y     S G  +   +V  R+ G           A +++ D      R + +
Sbjct: 376 QKENFTFHYNFPGFSVGEALMIGSVGRRELGHGN-------LAKKALEDSIIEKDRTLRL 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDC 140
             ++++++G +  A++ G  +A+  C
Sbjct: 429 VSEILESNGSSSMASVCGGSLAICAC 454


>gi|268592821|ref|ZP_06127042.1| polyribonucleotide nucleotidyltransferase [Providencia rettgeri DSM
           1131]
 gi|291311606|gb|EFE52059.1| polyribonucleotide nucleotidyltransferase [Providencia rettgeri DSM
           1131]
          Length = 707

 Score = 35.0 bits (79), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 8/143 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +    + +   G  T 
Sbjct: 315 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 375 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDHADFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           + +++G +  A++ GA +AL D 
Sbjct: 431 ITESNGSSSMASVCGASLALMDA 453


>gi|253997787|ref|YP_003049850.1| polynucleotide phosphorylase/polyadenylase [Methylovorus sp.
           SIP3-4]
 gi|313199851|ref|YP_004038509.1| polyribonucleotide nucleotidyltransferase [Methylovorus sp. MP688]
 gi|253984466|gb|ACT49323.1| Polyribonucleotide nucleotidyltransferase [Methylovorus sp. SIP3-4]
 gi|312439167|gb|ADQ83273.1| Polyribonucleotide nucleotidyltransferase [Methylovorus sp. MP688]
          Length = 707

 Score = 35.0 bits (79), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 71/178 (39%), Gaps = 33/178 (18%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I++   V     GS L   G+T  L  ATL    +E++   ++     
Sbjct: 315 RIDGRNTRTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDALQGEYTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ------ 111
                Y M P +TG        +GR G      +R IG    +   L A    Q      
Sbjct: 375 RFMLHYNMPPYATGE-------TGRVGTPK---RREIGHGRLAKRALLAALPSQEEFGYT 424

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           I +  ++ +++G +  A++ G  +AL D                 +K HVA I+ G++
Sbjct: 425 IRVVSEITESNGSSSMASVCGGCLALMDA-------------GVPVKTHVAGIAMGLI 469


>gi|297184126|gb|ADI20245.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 711

 Score = 35.0 bits (79), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 14/145 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR   ++R I         A GS +   G+T  LTT TL     +          T 
Sbjct: 320 RLDGRATTEVRPIWSEVDYLPGAHGSAVFTRGETQSLTTVTL--GTSLDANRIDDATFTG 377

Query: 62  E------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           E      Y   P STG       VS R+ G     Q    RAL  +VD     + +++  
Sbjct: 378 EEKFYLHYNFPPFSTGEARPIRGVSRREIGHGNLAQ----RALYQMVDPENPFTIRVV-- 431

Query: 116 CDVIQADGGTRTAAITGAWVALHDC 140
            D+++++G +  A +    +A+ D 
Sbjct: 432 SDILESNGSSSMATVCAGTLAMMDA 456


>gi|37680881|ref|NP_935490.1| polynucleotide phosphorylase/polyadenylase [Vibrio vulnificus
           YJ016]
 gi|37199630|dbj|BAC95461.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus YJ016]
          Length = 725

 Score = 35.0 bits (79), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 35/172 (20%), Positives = 70/172 (40%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL    + ++   +   K  
Sbjct: 333 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGEKKD 392

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
           +    Y   P   G      +   R+ G  +  +R I   + S+ +        + +  +
Sbjct: 393 YFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSIDEF----PYTVRVVSE 448

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A++ G  +AL D                 +K  VA I+ G++
Sbjct: 449 ITESNGSSSMASVCGTSLALMDA-------------GVPIKASVAGIAMGLV 487


>gi|730350|sp|P41121|PNP_PHOLU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=CAP87K; AltName: Full=Polynucleotide phosphorylase;
           Short=PNPase
 gi|561531|emb|CAA53671.1| polynucleotide phosphorylase [Photorhabdus luminescens]
          Length = 709

 Score = 35.0 bits (79), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 8/143 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +    I +   G  T 
Sbjct: 315 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 375 RFLLHYNFPPYSVGETGMMGSPKRREIGHG----RLAKRGVLAVMPKANEFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           + +++G +  A++ GA +AL D 
Sbjct: 431 ITESNGSSSMASVCGASLALMDA 453


>gi|270158094|ref|ZP_06186751.1| polyribonucleotide nucleotidyltransferase [Legionella longbeachae
           D-4968]
 gi|289163641|ref|YP_003453779.1| Polynucleotide phosphorylase (PNPase) [Legionella longbeachae
           NSW150]
 gi|269990119|gb|EEZ96373.1| polyribonucleotide nucleotidyltransferase [Legionella longbeachae
           D-4968]
 gi|288856814|emb|CBJ10625.1| Polynucleotide phosphorylase (PNPase) [Legionella longbeachae
           NSW150]
          Length = 721

 Score = 35.0 bits (79), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R IS+  ++ + A GS L   G+T  +  ATL  +    I +   G    
Sbjct: 314 RIDGRDCKTVRPISIRTKLLERAHGSVLFTRGETQAIVVATLGNERDAQILDNITGESKD 373

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  RA+ +V+  S      + +  +
Sbjct: 374 RFMLHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRAIMAVLPESNDFPYVLRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A + G  +AL D                 LK  VA ++ G++
Sbjct: 430 ITESNGSSSMATVCGTSLALMDA-------------GVPLKAPVAGVAMGLI 468


>gi|312211270|emb|CBX91355.1| similar to exosome complex exonuclease RRP41 [Leptosphaeria
           maculans]
          Length = 280

 Score = 35.0 bits (79), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 8/149 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHG 57
           +RL GR+ N++R I         A+GS  ++ G+T +L + T   +             G
Sbjct: 13  LRLDGRRWNELRRIHAQISTQAAADGSSYLEMGNTKILVSVTGPAEGRQSGQRGGQNGQG 72

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +  E      S  +R KR     +   R+ E++  +  A   V+ L       I ++  
Sbjct: 73  KVEVEINFAGFSGVDRRKR-----KSDKRTSEMEHCLRSAFEGVLLLHLYPHSTITLNIH 127

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED 146
           +I  DG    A I  A +AL D    M D
Sbjct: 128 IISQDGSLLAACINAATLALIDAGIPMSD 156


>gi|90412489|ref|ZP_01220492.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium
           profundum 3TCK]
 gi|90326526|gb|EAS42932.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium
           profundum 3TCK]
          Length = 707

 Score = 35.0 bits (79), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 25/204 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL    + ++   I   K  
Sbjct: 314 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSIMGEKKD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G  +  +R I   + SV +        + +  +
Sbjct: 374 HFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVEEF----PYTVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIV- 175
           + +++G +  A++ G  +AL D                 +K  VA I+ G++  G   V 
Sbjct: 430 ITESNGSSSMASVCGTSLALMDA-------------GVPIKASVAGIAMGLVKEGDDFVV 476

Query: 176 --DLDYGEDSTIDVDANFVMTDSG 197
             D+   ED   D+D     TD G
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTDDG 500


>gi|330447373|ref|ZP_08311022.1| polyribonucleotide nucleotidyltransferase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491564|dbj|GAA05519.1| polyribonucleotide nucleotidyltransferase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 708

 Score = 35.0 bits (79), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 35/172 (20%), Positives = 70/172 (40%), Gaps = 21/172 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL    + ++   +   K  
Sbjct: 314 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGEKKD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
           +    Y   P   G      +   R+ G  +  +R I   + S+ +        + +  +
Sbjct: 374 YFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSIDEF----PYTVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           + +++G +  A++ G  +AL D                 +K  VA I+ G++
Sbjct: 430 ITESNGSSSMASVCGTSLALMDA-------------GVPIKASVAGIAMGLV 468


>gi|226313012|ref|YP_002772906.1| polyribonucleotide nucleotidyltransferase [Brevibacillus brevis
           NBRC 100599]
 gi|254782708|sp|C0ZF43|PNP_BREBN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226095960|dbj|BAH44402.1| polyribonucleotide nucleotidyltransferase [Brevibacillus brevis
           NBRC 100599]
          Length = 715

 Score = 35.0 bits (79), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 80/208 (38%), Gaps = 29/208 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +R  GR  N++R +S    +     GS +   G T  L+  TL     + I +     + 
Sbjct: 317 VRPDGRALNEIRPLSSETTILSRTHGSAMFTRGQTQALSVCTLGALGDVQILDGLGLEES 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG-RALRSVVDLSALGSRQIIID 115
                 Y   P S G     EA   R  GR +     +G RA+  ++         I + 
Sbjct: 377 KRFMHHYNFPPYSVG-----EARPLRPPGRREIGHGALGERAIEPIIPSEVEFPYTIRLV 431

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            +VI+++G T  A+I  + +AL D                 +K  VA I+ G++      
Sbjct: 432 SEVIESNGSTSQASICASVLALMDA-------------GVPIKAPVAGIAMGLIMSKDEK 478

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSG 197
               + D+   ED   D+D     T++G
Sbjct: 479 SFSILTDIQGMEDHLGDMDFKVAGTEAG 506


>gi|117926996|ref|YP_867613.1| polynucleotide phosphorylase/polyadenylase [Magnetococcus sp. MC-1]
 gi|187610282|sp|A0LE14|PNP_MAGSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|117610752|gb|ABK46207.1| Polyribonucleotide nucleotidyltransferase [Magnetococcus sp. MC-1]
          Length = 701

 Score = 35.0 bits (79), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 8/143 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I+    +     G+ L   G+T  + T TL    +E++   +      
Sbjct: 318 RVDGRGLTDIRPIACEVSILPRVHGTALFTRGETQAIATVTLGTSRDEQIVETLSGEYRD 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G   +  A   R+ G      ++  RAL ++V  + +    + I  +
Sbjct: 378 RFYLNYTFPPYCVGETGRMGAPGRREIGHG----KLATRALTAIVPSAEVFPYTLRITSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           + +++G +  A + GA +A+ D 
Sbjct: 434 ITESNGSSSMATVCGAVLAMQDA 456


>gi|328853860|gb|EGG02996.1| hypothetical protein MELLADRAFT_109732 [Melampsora
          larici-populina 98AG31]
          Length = 319

 Score = 35.0 bits (79), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 2  RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
          R   R    +R ++++      A+GSC   FGD  +L   T   +V +W    KH   T 
Sbjct: 5  RSDARTNLDIRPLTISLSTLSRADGSCNFAFGDLKVLGAMTGPAEVKVWDEKPKHA--TV 62

Query: 62 EYGMLPRST 70
          E  +LP S+
Sbjct: 63 EVNVLPISS 71


>gi|27365068|ref|NP_760596.1| polynucleotide phosphorylase/polyadenylase [Vibrio vulnificus
           CMCP6]
 gi|320155451|ref|YP_004187830.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus
           MO6-24/O]
 gi|81448563|sp|Q8DBU9|PNP_VIBVU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611443|sp|Q7MI20|PNP_VIBVY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|27361214|gb|AAO10123.1| Polyribonucleotide nucleotidyltransferase [Vibrio vulnificus CMCP6]
 gi|319930763|gb|ADV85627.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus
           MO6-24/O]
          Length = 708

 Score = 35.0 bits (79), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL    + ++   +   K  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
           +    Y   P   G      +   R+ G  +  +R I   + S+ +        + +  +
Sbjct: 376 YFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSIDEF----PYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDC 140
           + +++G +  A++ G  +AL D 
Sbjct: 432 ITESNGSSSMASVCGTSLALMDA 454


>gi|224125980|ref|XP_002319726.1| predicted protein [Populus trichocarpa]
 gi|222858102|gb|EEE95649.1| predicted protein [Populus trichocarpa]
          Length = 853

 Score = 35.0 bits (79), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 32/211 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKH 56
           R  GR    +R I  +  +   A GS L   G+T  L   TL +K     V   +   + 
Sbjct: 376 RSDGRTPEGIRPIDSSCGLLPRAHGSALFTRGETQSLAVVTLGDKQMAQRVDNLVDEEEF 435

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P   G   +  A S R+ G     +R +   L S  D        + ++ 
Sbjct: 436 KRFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERALEPILPSENDF----PYTVRVES 491

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC------ 170
            + +++G +  A++ G  +AL D                 +K  +A I+ GM+       
Sbjct: 492 TITESNGSSSMASVCGGCLALQDA-------------GVPVKCMIAGIAMGMVLDTEEFG 538

Query: 171 --GYPIV--DLDYGEDSTIDVDANFVMTDSG 197
             G P++  D+   ED++ D+D      + G
Sbjct: 539 GDGTPLILSDITGSEDASGDMDFKVAGNEDG 569


>gi|256820519|ref|YP_003141798.1| polynucleotide phosphorylase/polyadenylase [Capnocytophaga ochracea
           DSM 7271]
 gi|256582102|gb|ACU93237.1| Polyribonucleotide nucleotidyltransferase [Capnocytophaga ochracea
           DSM 7271]
          Length = 735

 Score = 35.0 bits (79), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 10/144 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +RL GR   Q+R I         A GS +   G+T  LTT TL    E  V         
Sbjct: 318 IRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTLGTSREANVIDLPSEQGE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG        S R+ G     QR + R +      +      + +  
Sbjct: 378 ERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKRMIPEDCPYT------VRVVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDC 140
           ++++++G +  A +    +AL D 
Sbjct: 432 EILESNGSSSMATVCAGTLALMDA 455


>gi|260432181|ref|ZP_05786152.1| polyribonucleotide nucleotidyltransferase [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416009|gb|EEX09268.1| polyribonucleotide nucleotidyltransferase [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 716

 Score = 35.0 bits (79), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 93/234 (39%), Gaps = 29/234 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR    +R I     +     GS L   G+T  L   TL     E+ +     N K 
Sbjct: 318 RIDGRSTTDVRPIVAETGLLPRTHGSALFTRGETQALAVTTLGTGDDEQFIDALHGNFKS 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++   Y   P S G  V R    GR   R     ++  RAL++V+         I +  
Sbjct: 378 NFLL-HYNFPPYSVG-EVGRVGPPGR---REVGHGKLAWRALQAVLPAPTDFPYTIRVVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC----GY 172
           ++ +++G +  A++ G  +++ D                 LK  VA ++ G++      Y
Sbjct: 433 EITESNGSSSMASVCGGSLSMMDA-------------GVPLKAPVAGVAMGLILEEDGDY 479

Query: 173 PIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
            ++ D+   ED   D+D     T++G I  +Q   + A  + +     L  AKD
Sbjct: 480 AVLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKALAQAKD 532


>gi|73669985|ref|YP_306000.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina barkeri
           str. Fusaro]
 gi|72397147|gb|AAZ71420.1| ribosomal RNA-processing protein RRP42 [Methanosarcina barkeri str.
           Fusaro]
          Length = 260

 Score = 35.0 bits (79), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR     R+I L   V   AEGS  V  GDT +L    L+   P +  +   G I  
Sbjct: 22  RQDGRGFKDFRDIKLETNVIPKAEGSAKVTLGDTQVLVGVKLQPGTP-FPDSQDEGVIIT 80

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR 99
              + P ++      E   G     + E+ R++ R +R
Sbjct: 81  NLELNPIAS-----PEFEPGPPREEAIEMARVVDRGIR 113


Searching..................................................done


Results from round 2




>gi|222084657|ref|YP_002543186.1| ribonuclease PH [Agrobacterium radiobacter K84]
 gi|254808098|sp|B9J7T9|RNPH_AGRRK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|221722105|gb|ACM25261.1| ribonuclease PH [Agrobacterium radiobacter K84]
          Length = 238

 Score =  365 bits (939), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 153/239 (64%), Positives = 195/239 (81%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR++S  R  SK+AEGSCLVKFGDTH+L TA+LEEK P W+RN+  GW+T
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R+KREA SG+QGGR+QEIQR+IGR+LR+VVDL  LG RQI IDCDVIQ
Sbjct: 61  AEYGMLPRATGERMKREAASGKQGGRTQEIQRLIGRSLRAVVDLKELGERQITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAW+AL+DCL+ ME   N  ++ +VLK H+AAISCG+    P++DLDY 
Sbjct: 121 ADGGTRTASITGAWIALYDCLKWME-SRNMIKVERVLKDHIAAISCGIFASQPVIDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS+ + DANFVMT  G IVE+QG+AE   FS++ F  +++LAK+ IA+L++LQK  I+
Sbjct: 180 EDSSAETDANFVMTGKGGIVEIQGTAEGTPFSEEEFTTLMHLAKNGIAELVELQKQAIA 238


>gi|307822918|ref|ZP_07653148.1| ribonuclease PH [Methylobacter tundripaludum SV96]
 gi|307735693|gb|EFO06540.1| ribonuclease PH [Methylobacter tundripaludum SV96]
          Length = 345

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 122/241 (50%), Positives = 166/241 (68%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R+I  T   +K+AEGS LV+FGDT +L TA+++  VP +++    GWIT
Sbjct: 106 MRPSGRNPDQLRDIKFTCGFTKHAEGSVLVEFGDTRVLCTASVDRSVPRFLKGKGEGWIT 165

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA +G+QGGR+ EIQR+IGR+LR+ +DL ALG   I+IDCDV+Q
Sbjct: 166 AEYGMLPRSTHSRMGREASNGKQGGRTLEIQRLIGRSLRAAIDLKALGEHTIMIDCDVLQ 225

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +VAL   +Q M     K   +  L G +A++S G+  G P++DLDY 
Sbjct: 226 ADGGTRTASITGGFVALSLAVQKM--LKRKQIKTNPLHGQIASVSVGIYNGVPVLDLDYA 283

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM D+   +EVQG+AE   F ++   AML LA   I +L++ Q+  I N
Sbjct: 284 EDSNAETDMNVVMNDAAAFIEVQGTAEGHAFRKEELDAMLALAGSGIKELLEKQRFAIEN 343

Query: 241 E 241
            
Sbjct: 344 H 344


>gi|325291761|ref|YP_004277625.1| ribonuclease PH [Agrobacterium sp. H13-3]
 gi|325059614|gb|ADY63305.1| ribonuclease PH [Agrobacterium sp. H13-3]
          Length = 238

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 155/239 (64%), Positives = 193/239 (80%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR++S  R  SK+AEGSCLVKFGDTH+L TA+LEEK P W+RN+  GW+T
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLVTASLEEKTPPWLRNSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG RQI IDCDVIQ
Sbjct: 61  AEYGMLPRSTHERMKREASAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQISIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAW+ALHDCL+ ME   N  ++ +VLK H+AAISCG+    P++DLDY 
Sbjct: 121 ADGGTRTASITGAWIALHDCLKWME-TRNMIKVEKVLKDHIAAISCGIFAKQPVIDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS+ + DANFV+T SG IVEVQG+AE A FS++ F  +L LAK   ++L+ LQK  I+
Sbjct: 180 EDSSAETDANFVITGSGGIVEVQGTAEGAPFSEEEFLTLLGLAKAGCSELVALQKQAIA 238


>gi|159184261|ref|NP_353359.2| ribonuclease PH [Agrobacterium tumefaciens str. C58]
 gi|21759397|sp|Q8UIG8|RNPH_AGRT5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|159139588|gb|AAK86144.2| ribonuclease PH [Agrobacterium tumefaciens str. C58]
          Length = 238

 Score =  362 bits (930), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 156/239 (65%), Positives = 193/239 (80%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR++S  R  SK+AEGSCLVKFGDTH+L TA+LEEK P W+RN+  GW+T
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLVTASLEEKTPPWLRNSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+KREA SG+QGGR+QEIQR+IGR+LR+VVDL ALG RQI IDCDVIQ
Sbjct: 61  AEYGMLPRSTNERMKREAASGKQGGRTQEIQRLIGRSLRAVVDLQALGERQISIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAW+ALHDCL+ ME   N  ++ +VLK H+AAISCG+    P++DLDY 
Sbjct: 121 ADGGTRTASITGAWIALHDCLKWME-TRNMIKVEKVLKDHIAAISCGIFAKQPVIDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS+ + DANFV+T SG IVEVQG+AE A FS++ F  +L LAK   ++L+ LQK  I+
Sbjct: 180 EDSSAETDANFVITGSGGIVEVQGTAEGAPFSEEEFLTLLGLAKAGCSELVALQKQAIA 238


>gi|222147322|ref|YP_002548279.1| ribonuclease PH [Agrobacterium vitis S4]
 gi|254808101|sp|B9JZG3|RNPH_AGRVS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|221734312|gb|ACM35275.1| ribonuclease PH [Agrobacterium vitis S4]
          Length = 239

 Score =  361 bits (928), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 155/240 (64%), Positives = 192/240 (80%), Gaps = 1/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR+IS  R  SK+AEGSCLVKFGDTH+L TA+LE++ P W+RNT  GW+T
Sbjct: 1   MRPSGRKTDQMRKISFERNFSKHAEGSCLVKFGDTHVLCTASLEDRTPPWLRNTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R+KREA SG+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATGERIKREASSGKQSGRTQEIQRLIGRSLRAVVDLEALGERQISLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAW+ALHDCL+ ME   N  ++ +VLK HVAAISCG+    P++DLDY 
Sbjct: 121 ADGGTRTASITGAWIALHDCLKWME-SRNIIKVDRVLKDHVAAISCGIFAAQPVIDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + DANFVMT +G IVE+QG+AE   FSQ+ F  +L LA+  IA+L+ LQK  I+ 
Sbjct: 180 EDSAAETDANFVMTGTGGIVEIQGTAEGKPFSQEEFLTLLGLAQTGIAELVDLQKQAIAG 239


>gi|256752250|ref|ZP_05493114.1| ribonuclease PH [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748902|gb|EEU61942.1| ribonuclease PH [Thermoanaerobacter ethanolicus CCSD1]
          Length = 261

 Score =  360 bits (926), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 121/241 (50%), Positives = 172/241 (71%), Gaps = 2/241 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ N++R I +TR  +K+AEGS L++ G+T ++ TA++E+KVP + + T  GWIT+
Sbjct: 3   RIDGREFNELRPIKITRNFNKFAEGSVLIEMGNTKVICTASIEDKVPPFQKGTGKGWITS 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  RE   GR  GR+ EIQR+IGR+LRSVVDL  LG + I IDCDVIQA
Sbjct: 63  EYGMLPRATETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLEVLGEKTIWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITG+++AL D L  + +  +  ++   LKG VAA+S G++ G  ++DL + E
Sbjct: 123 DGGTRTASITGSFIALADALNKLVEKGDIPKI--PLKGFVAAVSVGIVEGNELLDLSFQE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS   VD N VMTD G IVE+QG+ E   F++ +   +L+LA+  I  +IK+QK+V+S+ 
Sbjct: 181 DSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLTDLLSLAEYGIEQIIKIQKEVLSDI 240

Query: 242 V 242
           V
Sbjct: 241 V 241


>gi|89093846|ref|ZP_01166792.1| Ribonuclease PH [Oceanospirillum sp. MED92]
 gi|89081976|gb|EAR61202.1| Ribonuclease PH [Oceanospirillum sp. MED92]
          Length = 256

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 171/239 (71%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +QMRE+ +TR  +K+AEGS LV+FG+T +L TAT+E  VP ++R +  GW+TA
Sbjct: 18  RPSGRDNDQMREVKITRNFTKHAEGSVLVEFGETKVLCTATVERGVPRFLRGSGQGWVTA 77

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+QGGR+ EIQR+IGR+LR+ +DL+ LG   I +DCDV+QA
Sbjct: 78  EYGMLPRSTTTRNAREAAKGKQGGRTVEIQRLIGRSLRAALDLNKLGENTITLDCDVLQA 137

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  ++   N       +K  +AA+S G+  G  ++DLDY E
Sbjct: 138 DGGTRTASITGAFVALQDAINVLKQDKNGAMKGDPIKQAIAAVSVGIFEGEAVLDLDYAE 197

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N +MT  G  +EVQG+AE A ++Q+   AML+LA+  I+++++LQ++ ++ 
Sbjct: 198 DSKAETDMNVIMTSKGGFIEVQGTAEGAPYTQEELNAMLDLARKGISEIVELQQEALAE 256


>gi|86356020|ref|YP_467912.1| ribonuclease PH [Rhizobium etli CFN 42]
 gi|123513255|sp|Q2KDA1|RNPH_RHIEC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|86280122|gb|ABC89185.1| ribonuclease PH protein [Rhizobium etli CFN 42]
          Length = 239

 Score =  360 bits (924), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 150/240 (62%), Positives = 193/240 (80%), Gaps = 1/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR++S  R  SK+AEGSCLVKFGDTH+L TA+LEEK P W+RNT  GW+T
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG +QI +DCDVIQ
Sbjct: 61  AEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGEKQITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG W+AL+DCL+ ME   N  ++ +VLK HVAAISCG+     ++DLDY 
Sbjct: 121 ADGGTRTASITGGWIALYDCLKWME-SRNMIKVDRVLKDHVAAISCGVFANQAVIDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS+ + DANFVMT +G IVE+QG+AE   FS++ F +++ LAK+ I +L+ LQK  I+ 
Sbjct: 180 EDSSAETDANFVMTGAGGIVEIQGTAEGTPFSEEEFSSLMRLAKNGIGELVALQKQAIAG 239


>gi|209547618|ref|YP_002279535.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|226736929|sp|B5ZMW8|RNPH_RHILW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|209533374|gb|ACI53309.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 239

 Score =  359 bits (923), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 151/240 (62%), Positives = 194/240 (80%), Gaps = 1/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR++S  R  SK+AEGSCLVKFGDTH+L TA+LEEK P W+RN+  GW+T
Sbjct: 1   MRPSGRKIDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG W+AL+DCL+ ME   N  ++ +VLK HVAAISCG+    P++DLDY 
Sbjct: 121 ADGGTRTASITGGWIALYDCLKWME-SRNMIKVDRVLKDHVAAISCGVFASQPVIDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS+ + DANFVMT +G IVE+QG+AE   FS++ F +++ LAK+ I +L+ LQK  I+ 
Sbjct: 180 EDSSAETDANFVMTGAGGIVEIQGTAEGTPFSEEEFTSLMGLAKNGIGELVALQKQAIAG 239


>gi|303258091|ref|ZP_07344099.1| tRNA nucleotidyltransferase [Burkholderiales bacterium 1_1_47]
 gi|330998696|ref|ZP_08322425.1| tRNA nucleotidyltransferase [Parasutterella excrementihominis YIT
           11859]
 gi|302859110|gb|EFL82193.1| tRNA nucleotidyltransferase [Burkholderiales bacterium 1_1_47]
 gi|329576435|gb|EGG57947.1| tRNA nucleotidyltransferase [Parasutterella excrementihominis YIT
           11859]
          Length = 245

 Score =  359 bits (923), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 125/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ +++R I +TR  +KYAEGS L++ G T ++ TA++EEKVP W+++   GW+TA
Sbjct: 8   RPSGRKADELRPIKITRHYTKYAEGSVLIEVGGTKVICTASVEEKVPGWLKDQGKGWVTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R  REA  G+Q GR+QEIQR+IGR+LR+VVD+ ALG R I IDCDV QA
Sbjct: 68  EYGMLPRATGTRTDREAAKGKQSGRTQEIQRLIGRSLRAVVDMEALGERMIKIDCDVTQA 127

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+ITGA+VAL D +  +    N       LKG VAA+S G+  G P+ D DY E
Sbjct: 128 DGGTRCASITGAYVALADAVNWL--IKNGSLEKSPLKGQVAALSVGIYEGVPVADFDYDE 185

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D   D D N VMTD+G  VE+QG+AE   FS++   A+L LA+D +  L   Q+  ++ E
Sbjct: 186 DHLSDTDMNVVMTDAGKFVELQGTAEGEPFSREDLDALLKLAEDGLKQLFAAQRAALAEE 245


>gi|167038078|ref|YP_001665656.1| ribonuclease PH [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167039210|ref|YP_001662195.1| ribonuclease PH [Thermoanaerobacter sp. X514]
 gi|300915534|ref|ZP_07132845.1| ribonuclease PH [Thermoanaerobacter sp. X561]
 gi|307267211|ref|ZP_07548716.1| ribonuclease PH [Thermoanaerobacter wiegelii Rt8.B1]
 gi|307723791|ref|YP_003903542.1| ribonuclease PH [Thermoanaerobacter sp. X513]
 gi|320116486|ref|YP_004186645.1| ribonuclease PH [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|326390883|ref|ZP_08212434.1| ribonuclease PH [Thermoanaerobacter ethanolicus JW 200]
 gi|226736946|sp|B0KBM5|RNPH_THEP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736947|sp|B0K3T4|RNPH_THEPX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166853450|gb|ABY91859.1| ribonuclease PH [Thermoanaerobacter sp. X514]
 gi|166856912|gb|ABY95320.1| ribonuclease PH [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|300888432|gb|EFK83583.1| ribonuclease PH [Thermoanaerobacter sp. X561]
 gi|306917760|gb|EFN48029.1| ribonuclease PH [Thermoanaerobacter wiegelii Rt8.B1]
 gi|307580852|gb|ADN54251.1| ribonuclease PH [Thermoanaerobacter sp. X513]
 gi|319929577|gb|ADV80262.1| ribonuclease PH [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|325993031|gb|EGD51472.1| ribonuclease PH [Thermoanaerobacter ethanolicus JW 200]
          Length = 261

 Score =  359 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 121/241 (50%), Positives = 172/241 (71%), Gaps = 2/241 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ N++R I +TR  +K+AEGS L++ G+T ++ TA++E+KVP + + T  GWIT+
Sbjct: 3   RIDGREFNELRPIKITRNFNKFAEGSVLIEMGNTKVICTASIEDKVPPFQKGTGKGWITS 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  RE   GR  GR+ EIQR+IGR+LRSVVDL  LG + I IDCDVIQA
Sbjct: 63  EYGMLPRATETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLDVLGEKTIWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITG+++AL D L  + +  +  ++   LKG VAA+S G++ G  ++DL + E
Sbjct: 123 DGGTRTASITGSFIALADALNKLVEKGDIPKI--PLKGFVAAVSVGIVEGNELLDLSFQE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS   VD N VMTD G IVE+QG+ E   F++ +   +L+LA+  I  +IK+QK+V+S+ 
Sbjct: 181 DSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLTDLLSLAEYGIEQIIKIQKEVLSDI 240

Query: 242 V 242
           V
Sbjct: 241 V 241


>gi|15964129|ref|NP_384482.1| ribonuclease PH [Sinorhizobium meliloti 1021]
 gi|307301274|ref|ZP_07581036.1| ribonuclease PH [Sinorhizobium meliloti BL225C]
 gi|307317945|ref|ZP_07597382.1| ribonuclease PH [Sinorhizobium meliloti AK83]
 gi|21759408|sp|Q92SK2|RNPH_RHIME RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|15073305|emb|CAC41813.1| Probable ribonuclease PH protein [Sinorhizobium meliloti 1021]
 gi|306896347|gb|EFN27096.1| ribonuclease PH [Sinorhizobium meliloti AK83]
 gi|306903730|gb|EFN34317.1| ribonuclease PH [Sinorhizobium meliloti BL225C]
          Length = 239

 Score =  358 bits (920), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 154/240 (64%), Positives = 195/240 (81%), Gaps = 1/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR++S  R  SK+AEGSCLV+FGDTH+L TA+LEEKVP W+RN   GWIT
Sbjct: 1   MRPSGRKTDQMRKVSFERSFSKHAEGSCLVRFGDTHVLCTASLEEKVPAWLRNGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R++REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI IDCDVIQ
Sbjct: 61  AEYGMLPRATGERMRREAATGKQSGRTQEIQRLIGRSLRAVVDLPALGERQISIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAW+ALHDCL+ ME   N  +L +VLK HVAAISCG+    P++DLDY 
Sbjct: 121 ADGGTRTASITGAWIALHDCLKWME-ARNMVKLEKVLKDHVAAISCGIFANQPVIDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + DANFVMT SG +VE+QG+AE   FS++ F +++ LAK+ IA+L+++QK  I+ 
Sbjct: 180 EDSAAETDANFVMTGSGGLVEIQGTAEGKPFSEEEFASLMLLAKNGIAELVEMQKQAIAG 239


>gi|254780630|ref|YP_003065043.1| ribonuclease PH [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040307|gb|ACT57103.1| ribonuclease PH [Candidatus Liberibacter asiaticus str. psy62]
          Length = 242

 Score =  358 bits (920), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 242/242 (100%), Positives = 242/242 (100%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT
Sbjct: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ
Sbjct: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG
Sbjct: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN
Sbjct: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240

Query: 241 EV 242
           EV
Sbjct: 241 EV 242


>gi|227820597|ref|YP_002824567.1| ribonuclease PH [Sinorhizobium fredii NGR234]
 gi|254808598|sp|C3MEJ1|RNPH_RHISN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|227339596|gb|ACP23814.1| ribonuclease PH [Sinorhizobium fredii NGR234]
          Length = 239

 Score =  357 bits (917), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 153/240 (63%), Positives = 193/240 (80%), Gaps = 1/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR++S  R  SK+AEGSCLV+FGDTH+L TA+LE+KVP W+RN   GWIT
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVRFGDTHVLCTASLEDKVPAWLRNGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R++REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI IDCDVIQ
Sbjct: 61  AEYGMLPRATGERMRREASTGKQSGRTQEIQRLIGRSLRAVVDLPALGERQISIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAW+ALHDCL+ ME   N  ++ +VLK HVAAISCG+     +VDLDY 
Sbjct: 121 ADGGTRTASITGAWIALHDCLKWME-ARNMIKVERVLKDHVAAISCGIFANQAVVDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + DANFVMT SG +VE+QG+AE   FS++ F +++ LAKD IA+L+ LQK  ++ 
Sbjct: 180 EDSAAETDANFVMTGSGGLVEIQGTAEGKPFSEEEFASLMQLAKDGIAELVALQKQAVAG 239


>gi|20807113|ref|NP_622284.1| RNase PH [Thermoanaerobacter tengcongensis MB4]
 gi|22096086|sp|Q8RC30|RNPH_THETN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|20515606|gb|AAM23888.1| RNase PH [Thermoanaerobacter tengcongensis MB4]
          Length = 261

 Score =  357 bits (917), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 121/239 (50%), Positives = 170/239 (71%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ N++R I +TR  +K+AEGS L++ G+T ++ TA++E+KVP + + T  GWIT+
Sbjct: 3   RIDGREFNELRPIKITRNFNKFAEGSVLIEMGETKVICTASIEDKVPPFQKGTGKGWITS 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  RE   GR  GR+ EIQR+IGR+LR+VVDL ALG R I IDCDVIQA
Sbjct: 63  EYGMLPRATEVRNPREVTKGRPSGRTMEIQRLIGRSLRAVVDLEALGERTIWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITG+++AL D L  + +     ++   LK  VAA+S G++ G  ++DL + E
Sbjct: 123 DGGTRTASITGSFIALADALNKLVEKGELQKI--PLKSFVAAVSVGIVEGNKLLDLSFQE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D+   VD N VMTD G IVE+QG+ E   FS+ +F  +L+LA   I  +IK+QK+V+S+
Sbjct: 181 DANALVDMNVVMTDKGEIVEIQGTGEGGPFSRQNFEELLDLAAHGIEQIIKIQKEVLSD 239


>gi|254448548|ref|ZP_05062008.1| ribonuclease PH [gamma proteobacterium HTCC5015]
 gi|198261931|gb|EDY86216.1| ribonuclease PH [gamma proteobacterium HTCC5015]
          Length = 240

 Score =  357 bits (916), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 124/239 (51%), Positives = 174/239 (72%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGRQ +Q+R++ LTR+ + +AEGS LV+FG+T ++ TA++EE+VP +++    GW+TA
Sbjct: 4   RPSGRQADQLRDVRLTRQYTCHAEGSVLVEFGNTKVICTASVEERVPPFLKGQGQGWVTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG+R+ REA  G+Q GR+QEIQR+IGR+LR+ +DL ALG RQI +DCDVIQA
Sbjct: 64  EYGMLPRSTGSRMGREAARGKQSGRTQEIQRLIGRSLRAAIDLEALGERQITLDCDVIQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +   ++       L G VA+IS G+  G P++DLDY E
Sbjct: 124 DGGTRTASITGAFVALTDAVNQL--INDGKLSKSPLLGQVASISVGIYEGTPVLDLDYPE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VM D+GH +EVQG+AE   F ++    +L+LA   I +L ++QK  ++ 
Sbjct: 182 DSNAETDMNVVMNDAGHFIEVQGTAEGHAFRREELNQLLDLADKGIRELFEVQKAALAK 240


>gi|297544117|ref|YP_003676419.1| ribonuclease PH [Thermoanaerobacter mathranii subsp. mathranii str.
           A3]
 gi|296841892|gb|ADH60408.1| ribonuclease PH [Thermoanaerobacter mathranii subsp. mathranii str.
           A3]
          Length = 259

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 119/237 (50%), Positives = 169/237 (71%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ N++R I +TR  +K+AEGS L++ G+T ++ TA++E+KVP + + T  GWIT+
Sbjct: 3   RIDGREFNELRPIKITRNFNKFAEGSVLIEMGETKVICTASIEDKVPPFQKGTGKGWITS 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  RE   GR  GR+ EIQR+IGR+LRSVVDL  LG + I IDCDVIQA
Sbjct: 63  EYGMLPRATETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLEVLGEKTIWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITG+++AL D L  + +  +  ++   LKG VAA+S G++ G  ++DL + E
Sbjct: 123 DGGTRTASITGSFIALADALNKLVEKGDIPKI--PLKGFVAAVSVGIVDGNKLLDLSFQE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS   VD N VMTD G IVE+QG+ E   F++ +   +L+LA+  I  +IK+QK+V+
Sbjct: 181 DSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLSDLLSLAEYGIEQIIKIQKEVL 237


>gi|90420650|ref|ZP_01228556.1| ribonuclease PH [Aurantimonas manganoxydans SI85-9A1]
 gi|90334941|gb|EAS48702.1| ribonuclease PH [Aurantimonas manganoxydans SI85-9A1]
          Length = 241

 Score =  356 bits (915), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 145/239 (60%), Positives = 187/239 (78%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R +SL R  S++AEGSCLV+FGDTH+L TA+LEE+VP W++N+  GW+T
Sbjct: 1   MRPSKRAFDELRPVSLERNYSRHAEGSCLVRFGDTHVLCTASLEERVPGWLKNSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG+R++REA SG+Q GR+QEIQR++GR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATGDRMRREAASGKQSGRTQEIQRLVGRSLRAVVDLQALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG +VAL DCL  M   +     ++VLK HVAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGGYVALADCLAWMGQRA-MVDPAKVLKDHVAAISCGIYKGEPVLDLDYP 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFVMT +G IVE+QG+AE   FSQD F  +L+LA+  I DL+ +Q+  I 
Sbjct: 180 EDSAAETDANFVMTGAGGIVEIQGTAEGTPFSQDEFLKLLDLARKGINDLVGMQRQAIE 238


>gi|157963655|ref|YP_001503689.1| ribonuclease PH [Shewanella pealeana ATCC 700345]
 gi|189043776|sp|A8H9B7|RNPH_SHEPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157848655|gb|ABV89154.1| ribonuclease PH [Shewanella pealeana ATCC 700345]
          Length = 237

 Score =  356 bits (915), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 123/239 (51%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q R +++TR+ + +AEGS LV+FGDT +L TA+ EE VP +++    GW+T
Sbjct: 1   MRPSNRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+Q GR+QEIQR+IGR+LR+ VD+  LG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAARGKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D L            +  LK  +AA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G I+E+QG+AE   FS +   ++L+LAK  I +++ +QK  +S
Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLSLLDLAKHGIREIVDIQKASLS 237


>gi|330447145|ref|ZP_08310795.1| ribonuclease PH [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491336|dbj|GAA05292.1| ribonuclease PH [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 238

 Score =  356 bits (915), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 128/240 (53%), Positives = 171/240 (71%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  NQ+R I++TR+ + +AEGS LV+FG+T ++ TA++EE VP W++    GW+T
Sbjct: 1   MRPSGRSANQVRPITITRQYTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+QGGR+ EIQR+I R+LR+ VDL  LG + I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNRREAANGKQGGRTMEIQRLIARSLRAAVDLEVLGEQMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D + +M +          LKG VAA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTASITGAMVALVDAINYMLE--KGMIKKNPLKGMVAAVSVGIYNGEPICDLEYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G ++E+QG+AE   FS +   AML LAKD I+D+I +QK  + N
Sbjct: 179 EDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGISDIISMQKQALEN 238


>gi|190890032|ref|YP_001976574.1| ribonuclease PH protein [Rhizobium etli CIAT 652]
 gi|218516544|ref|ZP_03513384.1| ribonuclease PH [Rhizobium etli 8C-3]
 gi|226736928|sp|B3PZA2|RNPH_RHIE6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|190695311|gb|ACE89396.1| ribonuclease PH protein [Rhizobium etli CIAT 652]
          Length = 239

 Score =  356 bits (915), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 149/240 (62%), Positives = 193/240 (80%), Gaps = 1/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR++S  R  SK+AEGSCLVKFGDTH+L TA+LE+K P W+RNT  GW+T
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEDKTPPWLRNTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG W+AL+DCL+ ME   N  ++ +VLK HVAAISCG+     ++DLDY 
Sbjct: 121 ADGGTRTASITGGWIALYDCLKWME-SRNMIKVDRVLKDHVAAISCGVFASQAVIDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS+ + DANFVMT +G IVE+QG+AE   F+++ F +++ LAK+ I +L+ LQK  I+ 
Sbjct: 180 EDSSAETDANFVMTGAGGIVEIQGTAEGTPFTEEEFTSLMGLAKNGIGELVALQKQAIAG 239


>gi|107104436|ref|ZP_01368354.1| hypothetical protein PaerPA_01005513 [Pseudomonas aeruginosa PACS2]
          Length = 239

 Score =  356 bits (914), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 125/239 (52%), Positives = 164/239 (68%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T + E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R +REA  G+QGGR+ EIQR+IGR+LR+ +DLS LG   + IDCDVIQA
Sbjct: 63  EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++           LK  VAA+S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGATVALIDALAVLKKRGAL--KGNPLKQMVAAVSVGIYQGVPVLDLDYLE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMTD+G  +EVQG+AE A F  D   AML LA+  + +L +LQ+  ++ 
Sbjct: 181 DSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPDELNAMLELAQQGMQELFELQRAALAE 239


>gi|152984751|ref|YP_001351426.1| ribonuclease PH [Pseudomonas aeruginosa PA7]
 gi|166228301|sp|A6VEE1|RNPH_PSEA7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|150959909|gb|ABR81934.1| ribonuclease PH [Pseudomonas aeruginosa PA7]
          Length = 239

 Score =  355 bits (913), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 125/239 (52%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T + E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R +REA  G+QGGR+ EIQR+IGR+LR+ +DLS LG   + IDCDVIQA
Sbjct: 63  EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++           LK  VAA+S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGATVALIDALAVLKKRGAL--KGNPLKQMVAAVSVGIYQGVPVLDLDYLE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMTDSG  +EVQG+AE A F      AML LA+  + +L +LQ+  ++ 
Sbjct: 181 DSAAETDLNVVMTDSGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALAE 239


>gi|13473880|ref|NP_105448.1| ribonuclease PH [Mesorhizobium loti MAFF303099]
 gi|21759410|sp|Q98DN6|RNPH_RHILO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|14024631|dbj|BAB51234.1| ribonuclease PH [Mesorhizobium loti MAFF303099]
          Length = 238

 Score =  355 bits (912), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 152/239 (63%), Positives = 187/239 (78%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S RQ ++MR IS  R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RN+  GW+T
Sbjct: 1   MRPSKRQFDEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG R++REA +G+QGGR+ EIQR+IGR+LR+VVDL ALG +QI +DCDVIQ
Sbjct: 61  AEYGMLPRSTGERMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG WVAL+DCL+ ME       +S+VLK HVAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGGWVALYDCLRWME-ARQMASVSKVLKDHVAAISCGIHDGQPVIDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    DANFVMT  G IVE+QG+AE   FS+D F  ++ LAK  I  L+ LQ+  ++
Sbjct: 180 EDSAAGTDANFVMTGKGGIVEIQGTAEGEPFSEDQFAELMGLAKKGIQRLVSLQQMAVA 238


>gi|299066246|emb|CBJ37430.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum
           CMR15]
          Length = 238

 Score =  355 bits (912), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 129/239 (53%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ +Q+R ++LTR  +++AEGS LV FGDTH+L TA++  KVP   + +  GW+T
Sbjct: 1   MRPSGRQPDQLRPVTLTRHYTRHAEGSVLVCFGDTHVLCTASVLPKVPPHKKGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGRA+RSV DLSALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTIHLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA HD +  M          + ++  VAA+S G++ G P++DLDY 
Sbjct: 121 ADGGTRTASITGAFVAAHDAISVMRKKGQL--AGEPIRDFVAAVSVGVVDGVPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS+ D D N VMT +G  VEVQG+AE   F++    A+L LA   I  LI LQK  + 
Sbjct: 179 EDSSCDTDMNVVMTGAGGFVEVQGTAEGTPFTRTEMDALLGLADQGIRTLIGLQKQALG 237


>gi|241202761|ref|YP_002973857.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240856651|gb|ACS54318.1| ribonuclease PH [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 239

 Score =  355 bits (912), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 150/240 (62%), Positives = 192/240 (80%), Gaps = 1/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR++S  R  SK+AEGSCLVKFGDTH+L TA+LEEK P W+RNT  GW+T
Sbjct: 1   MRPSGRKIDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG W+AL+DCL+ ME   N  ++ +VLK HVAAISCG+    P++DLDY 
Sbjct: 121 ADGGTRTASITGGWIALYDCLKWME-SRNMIKVERVLKDHVAAISCGIFASQPVIDLDYI 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS+ + DANFVMT +G IVE+QG+AE   FS+  F +++ LA++ I +L+ LQK  +  
Sbjct: 180 EDSSAETDANFVMTGTGGIVEIQGTAEGTPFSEGEFTSLMQLARNGIGELVALQKQAVEG 239


>gi|150395238|ref|YP_001325705.1| ribonuclease PH [Sinorhizobium medicae WSM419]
 gi|166228322|sp|A6U5E0|RNPH_SINMW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|150026753|gb|ABR58870.1| ribonuclease PH [Sinorhizobium medicae WSM419]
          Length = 239

 Score =  355 bits (912), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 153/240 (63%), Positives = 195/240 (81%), Gaps = 1/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR++S  R  SK+AEGSCLV+FGDTH+L TA+LE+KVP W+RN   GW+T
Sbjct: 1   MRPSGRKTDQMRKVSFERNFSKHAEGSCLVRFGDTHVLCTASLEDKVPGWLRNGGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R++REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATGERMRREASAGKQSGRTQEIQRLIGRSLRAVVDLPALGERQISVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAW+ALHDCL+ ME   N  +L +VLK HVAAISCG+    P+VDLDY 
Sbjct: 121 ADGGTRTASITGAWIALHDCLKWME-ARNMVKLEKVLKDHVAAISCGIFASQPVVDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + DANFVMT SG +VE+QG+AE   FS++ F +++ LAK+ IA+LI++QK  I+ 
Sbjct: 180 EDSAAETDANFVMTGSGGLVEIQGTAEGKPFSEEEFASLMLLAKNGIAELIEMQKLAIAG 239


>gi|116250149|ref|YP_765987.1| ribonuclease PH [Rhizobium leguminosarum bv. viciae 3841]
 gi|166228307|sp|Q1MMD1|RNPH_RHIL3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|115254797|emb|CAK05871.1| putative ribonuclease [Rhizobium leguminosarum bv. viciae 3841]
          Length = 239

 Score =  355 bits (912), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 150/240 (62%), Positives = 192/240 (80%), Gaps = 1/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR++S  R  SK+AEGSCLVKFGDTH+L TA+LEEK P W+RNT  GW+T
Sbjct: 1   MRPSGRKIDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTPPWLRNTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R+KREA +G+QGGR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATGERMKREAAAGKQGGRTQEIQRLIGRSLRAVVDLQALGERQITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG W+AL+DCL+ ME   N  ++ +VLK HVAAISCG+    P++DLDY 
Sbjct: 121 ADGGTRTASITGGWIALYDCLKWME-SRNMIKVDRVLKDHVAAISCGIFASQPVIDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS+ + DANFVMT +G IVE+QG+AE   FS+  F +++ LA++ I +L+ LQK  +  
Sbjct: 180 EDSSAETDANFVMTGTGGIVEIQGTAEGTPFSEGEFTSLMQLARNGIGELVALQKQAVEG 239


>gi|295677344|ref|YP_003605868.1| ribonuclease PH [Burkholderia sp. CCGE1002]
 gi|295437187|gb|ADG16357.1| ribonuclease PH [Burkholderia sp. CCGE1002]
          Length = 245

 Score =  355 bits (912), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 129/238 (54%), Positives = 170/238 (71%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGRQ NQ+R++ +TR  +K+AEGS LV+FGDT ++ TA++ E VP ++R+   GW+TA
Sbjct: 7   RPSGRQPNQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASVSESVPPFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALRSV DL  LG+R I +DCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTINLDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   +     S  +  +VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVARL--LATGRIESSPITDYVAAISVGVYDGVPVLDLDYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMT +G  VE+QG+AE   FS++   A+L+LA D I+ LI  QK+ + 
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSREEMNALLDLASDGISTLIAKQKEALG 242


>gi|71553993|gb|AAZ33204.1| ribonuclease PH [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 294

 Score =  355 bits (911), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 165/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 57  RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 116

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 117 EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 176

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  +       +    LK  +AA+S GM  G P++DLDY E
Sbjct: 177 DGGTRTASITGAMVALADAL-KVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYPE 235

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  +   AML LA+  + +L +LQ+  +++
Sbjct: 236 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQRAALAD 294


>gi|304317496|ref|YP_003852641.1| ribonuclease PH [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302778998|gb|ADL69557.1| ribonuclease PH [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 259

 Score =  355 bits (911), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 113/239 (47%), Positives = 162/239 (67%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I +TR  ++YAEGS L++ G+T ++ TA++E+KVP + + T  GWIT+
Sbjct: 3   RVDGRDPKSLRPIKITRNFNRYAEGSVLIEVGNTKVICTASIEDKVPPFQKGTGKGWITS 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY M+PR+T  R +RE+  G+Q GR+ EIQR+IGRALR+VVDL ALG + I IDCDVIQA
Sbjct: 63  EYSMIPRATETRTQRESTKGKQSGRTMEIQRLIGRALRAVVDLDALGEKTIWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITG++VAL D +  +            +K  VAA+S G++    ++DL Y E
Sbjct: 123 DGGTRTASITGSFVALVDAMNKL--LQKGVISKMPIKSFVAAVSVGIVGDNKLLDLCYLE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D    VD N VMTD G  +E+QG+ E   FS+D F  +L LA+D +  +I++QK+ + +
Sbjct: 181 DCNAHVDMNIVMTDKGEFIEIQGTGEGGPFSKDDFTELLGLAEDGLNKIIEIQKEALGD 239


>gi|167586475|ref|ZP_02378863.1| ribonuclease PH [Burkholderia ubonensis Bu]
          Length = 246

 Score =  355 bits (911), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 130/238 (54%), Positives = 171/238 (71%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ +++R+++LTR  +K+AEGS LV+FGDT ++ TA++ E+VP ++R+   GW+TA
Sbjct: 7   RPSGRRADELRKVTLTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +            +  HVAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLIAAGKL--ARSPITDHVAAISVGVFDGTPVLDLDYPE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMT +G  VEVQG+AE   FS+D   A+L+LA+  I  L++LQKD + 
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRDEMNALLDLAQSGIGQLVRLQKDALG 242


>gi|110636340|ref|YP_676548.1| ribonuclease PH [Mesorhizobium sp. BNC1]
 gi|122965408|sp|Q11B42|RNPH_MESSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|110287324|gb|ABG65383.1| RNAse PH [Chelativorans sp. BNC1]
          Length = 238

 Score =  354 bits (910), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 150/239 (62%), Positives = 186/239 (77%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S RQ ++MR IS  R VSK+AEGSCLV+FGDTH+L TA+LEEKVP W+RN+  GW+T
Sbjct: 1   MRPSRRQPDEMRAISFERGVSKHAEGSCLVRFGDTHVLCTASLEEKVPAWLRNSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG R++REA SG+QGGR+ EIQR++GR+LRSV+DL ALG  QI +DCDV+Q
Sbjct: 61  AEYGMLPRSTGERMRREAASGKQGGRTLEIQRLVGRSLRSVIDLEALGEMQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG +VALHDCL  M        + +VLK HVAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGGFVALHDCLSWM-QARQMVTVERVLKDHVAAISCGIYDGTPVLDLDYA 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFVMT  G IVE+QG+AE A F+++ F  +L LA+  I  L++LQK  +S
Sbjct: 180 EDSAAETDANFVMTGKGGIVEIQGTAEGAPFTEEEFHELLRLARKGIFRLVELQKMAVS 238


>gi|212635008|ref|YP_002311533.1| ribonuclease PH [Shewanella piezotolerans WP3]
 gi|226736939|sp|B8CM22|RNPH_SHEPW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|212556492|gb|ACJ28946.1| Ribonuclease PH [Shewanella piezotolerans WP3]
          Length = 237

 Score =  354 bits (910), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 121/239 (50%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q R +++TR+ + +AEGS LV+FGDT +L TA+ EE VP +++    GW+T
Sbjct: 1   MRPSNRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+Q GR+QEIQR+IGR+LR+ VD+  LG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D L            +  LK  +AA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G ++E+QG+AE   F+ +   ++L+LAK  I +++ +QK  +S
Sbjct: 179 EDSAAETDMNVVMTETGKMIEIQGTAEGEPFTHEELLSLLDLAKHGIREIVDIQKASLS 237


>gi|269103912|ref|ZP_06156609.1| ribonuclease PH [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163810|gb|EEZ42306.1| ribonuclease PH [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 238

 Score =  354 bits (910), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 125/240 (52%), Positives = 170/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R I++TR+ + +AEGS LV+FG+T ++ TA++EE VP W++    GW+T
Sbjct: 1   MRPSGRSASQVRPITITRQFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+ VDL  LG + I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEVLGEQMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D + +M +          LK  VAA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTASITGAMVALVDAIHYMLE--KGMIKKNPLKTMVAAVSVGIYNGEPICDLEYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G ++E+QG+AE   FS +   AML LAK+ I ++I  QK  ++N
Sbjct: 179 EDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKEGINEIIAQQKQALAN 238


>gi|15600527|ref|NP_254021.1| ribonuclease PH [Pseudomonas aeruginosa PAO1]
 gi|116053481|ref|YP_793808.1| ribonuclease PH [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894437|ref|YP_002443307.1| ribonuclease PH [Pseudomonas aeruginosa LESB58]
 gi|254237972|ref|ZP_04931295.1| ribonuclease PH [Pseudomonas aeruginosa C3719]
 gi|254243780|ref|ZP_04937102.1| ribonuclease PH [Pseudomonas aeruginosa 2192]
 gi|296392194|ref|ZP_06881669.1| ribonuclease PH [Pseudomonas aeruginosa PAb1]
 gi|313106761|ref|ZP_07792977.1| ribonuclease PH [Pseudomonas aeruginosa 39016]
 gi|12230959|sp|P50597|RNPH_PSEAE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|122256498|sp|Q02E28|RNPH_PSEAB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736925|sp|B7V5M5|RNPH_PSEA8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|46015434|pdb|1R6M|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
           From Pseudomonas Aeruginosa In Complex With Phosphate
 gi|9951653|gb|AAG08719.1|AE004946_3 ribonuclease PH [Pseudomonas aeruginosa PAO1]
 gi|115588702|gb|ABJ14717.1| ribonuclease PH [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126169903|gb|EAZ55414.1| ribonuclease PH [Pseudomonas aeruginosa C3719]
 gi|126197158|gb|EAZ61221.1| ribonuclease PH [Pseudomonas aeruginosa 2192]
 gi|218774666|emb|CAW30483.1| ribonuclease PH [Pseudomonas aeruginosa LESB58]
 gi|310879479|gb|EFQ38073.1| ribonuclease PH [Pseudomonas aeruginosa 39016]
          Length = 239

 Score =  354 bits (910), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 124/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T + E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R +REA  G+QGGR+ EIQR+IGR+LR+ +DLS LG   + IDCDVIQA
Sbjct: 63  EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++           LK  VAA+S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGATVALIDALAVLKKRGAL--KGNPLKQMVAAVSVGIYQGVPVLDLDYLE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMTD+G  +EVQG+AE A F      AML LA+  + +L +LQ+  ++ 
Sbjct: 181 DSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALAE 239


>gi|71278026|ref|YP_266880.1| ribonuclease PH [Colwellia psychrerythraea 34H]
 gi|123634261|sp|Q48AN3|RNPH_COLP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|71143766|gb|AAZ24239.1| ribonuclease PH [Colwellia psychrerythraea 34H]
          Length = 237

 Score =  354 bits (910), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 129/239 (53%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q+R +++TR+ + +AEGS L++FGDT ++ TAT+E  VP +++    GW+T
Sbjct: 1   MRPSGRTLGQIRPVTITRQFTTHAEGSVLIEFGDTKVICTATVEVGVPRFLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R++REA SG+Q GR+ EI R+I RALR+ VDL ALG   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHTRMRREAASGKQSGRTLEISRLIARALRAAVDLKALGENTISVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D L +M   +     +  LK  +AA+S G+  G P+ DLDY 
Sbjct: 121 ADGGTRTAAITGACVALVDALNYMR--AKDIIKTNPLKHMIAAVSVGIYKGEPVADLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMTD+G ++EVQG+AE   FS +   AML LAK+ I +L  LQK  +S
Sbjct: 179 EDSAADTDMNVVMTDTGKLIEVQGTAEEEPFSFEEMQAMLELAKNGINELFDLQKAALS 237


>gi|17546878|ref|NP_520280.1| ribonuclease PH [Ralstonia solanacearum GMI1000]
 gi|21759400|sp|Q8XXF5|RNPH_RALSO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|17429178|emb|CAD15866.1| probable ribonuclease ph (rnase ph) (trnanucleotidyltransferase)
           protein [Ralstonia solanacearum GMI1000]
          Length = 238

 Score =  354 bits (910), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 128/239 (53%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ +Q+R ++LTR  +++AEGS LV FGDTH+L TA++  KVP   + +  GW+T
Sbjct: 1   MRPSGRQPDQLRPVTLTRHYTRHAEGSVLVCFGDTHVLCTASVLPKVPPHKKGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGRA+RSV DLSALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTIHLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA HD +  M          + ++  VAA+S G++ G P++DLDY 
Sbjct: 121 ADGGTRTASITGAFVAAHDAISVMRKKGQL--TGEPIRDFVAAVSVGVVDGVPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED++ D D N VMT +G  VEVQG+AE   F++    A+L LA   I  LI LQK  + 
Sbjct: 179 EDASCDTDMNIVMTGAGGFVEVQGTAEGTPFTRTEMDALLGLADHGIRTLIGLQKQALG 237


>gi|110799614|ref|YP_696926.1| ribonuclease PH [Clostridium perfringens ATCC 13124]
 gi|123344527|sp|Q0TN64|RNPH_CLOP1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|110674261|gb|ABG83248.1| ribonuclease PH [Clostridium perfringens ATCC 13124]
          Length = 248

 Score =  354 bits (910), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 113/241 (46%), Positives = 160/241 (66%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR++ Q+R + +TR  +KYAEGS L++ GDT +L TA++EEKVP +++ +  GWIT
Sbjct: 1   MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASIEEKVPPFLKGSGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST +R +RE    +  GR+ EIQR+IGRALRS VD+ ALG + I IDCDV+Q
Sbjct: 61  AEYNMLPRSTQSRKQREINKLKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG++VAL D +  +     K      ++  V+A+S G++    ++DL Y 
Sbjct: 121 ADGGTRTTSITGSFVALVDAVNKLHQ--KKPFNVYPIRHFVSAVSVGIVGEEKVLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED    VD N VMT+ G  +E+QG+ E   FS+     +LNLA+     +I+ QKD +  
Sbjct: 179 EDHVAKVDMNVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQAQKDALKT 238

Query: 241 E 241
           +
Sbjct: 239 D 239


>gi|291612874|ref|YP_003523031.1| ribonuclease PH [Sideroxydans lithotrophicus ES-1]
 gi|291582986|gb|ADE10644.1| ribonuclease PH [Sideroxydans lithotrophicus ES-1]
          Length = 238

 Score =  354 bits (909), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 125/238 (52%), Positives = 165/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R+ +Q+R I +TR  +K+AEGS L++ GDT ++ TA++EE+VP   + +  GW+T
Sbjct: 1   MRPSQRKHDQLRAIRITRHYTKHAEGSVLIECGDTKVICTASVEERVPPHKKGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG R+ REA  G+Q GR+QEIQR+IGR+LR+VVDL  LG R + +DCDVIQ
Sbjct: 61  AEYGMLPRSTGERMSREAAKGKQSGRTQEIQRLIGRSLRAVVDLGKLGERTVTLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D +  +            LK  VAAIS G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAFVALSDAVAALMQ--QGLVKENPLKHAVAAISVGIYQGIPVLDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  D D N VM  +GH VEVQG+AE   FS++    +L LAK  I  L+ +Q+  +
Sbjct: 179 EDSDCDTDMNVVMLGNGHFVEVQGTAEGHAFSREEMDTLLELAKHGITQLVAMQQKAL 236


>gi|289577832|ref|YP_003476459.1| ribonuclease PH [Thermoanaerobacter italicus Ab9]
 gi|289527545|gb|ADD01897.1| ribonuclease PH [Thermoanaerobacter italicus Ab9]
          Length = 261

 Score =  354 bits (908), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 121/241 (50%), Positives = 172/241 (71%), Gaps = 2/241 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ N++R I +TR  +K+AEGS L++ G+T ++ TA++E+KVP + + T  GWIT+
Sbjct: 3   RIDGREFNELRPIKITRNFNKFAEGSVLIEMGETKVICTASIEDKVPPFQKGTGKGWITS 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  RE   GR  GR+ EIQR+IGR+LRSVVDL  LG + I IDCDVIQA
Sbjct: 63  EYGMLPRATETRNPREVTKGRPSGRTMEIQRLIGRSLRSVVDLDVLGEKTIWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITG+++AL D L  + +  +  ++   LKG VAA+S G++ G  ++DL + E
Sbjct: 123 DGGTRTASITGSFIALADALNKLVEKGDISKI--PLKGFVAAVSVGIVDGNKLLDLSFQE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS   VD N VMTD G IVE+QG+ E   F++ +   +L+LA+  I  +IK+QK+V+S+ 
Sbjct: 181 DSNALVDMNVVMTDKGEIVEIQGTGEGGPFTKQNLSDLLSLAEYGIEQIIKIQKEVLSDI 240

Query: 242 V 242
           V
Sbjct: 241 V 241


>gi|297537277|ref|YP_003673046.1| ribonuclease PH [Methylotenera sp. 301]
 gi|297256624|gb|ADI28469.1| ribonuclease PH [Methylotenera sp. 301]
          Length = 243

 Score =  354 bits (908), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 133/238 (55%), Positives = 170/238 (71%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R S R  NQ+R + + R  +K+AEGS LVKFGDTH+L TA++EEKVP +++    GW+TA
Sbjct: 7   RPSQRANNQLRNVEIIRHYTKHAEGSVLVKFGDTHVLCTASVEEKVPGFLKGKGQGWVTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG+R+ REA  G+Q GR+QEIQR+IGR+LR+++DL  LG R I +DCDVIQA
Sbjct: 67  EYGMLPRSTGSRMDREAAKGKQSGRTQEIQRLIGRSLRAIIDLEKLGERSIHMDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VALHD +  +    N    +  LK  VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAYVALHDAISTL--LKNGKLTTSPLKQGVAAISVGVYKGTPVLDLDYIE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMT  G  VE+QG+AE   FS+D   AML+LA   I  L+  Q +V+S
Sbjct: 185 DSDCDTDMNVVMTADGGFVEIQGTAEGEPFSRDAMNAMLDLAAHGIKQLVIKQNEVLS 242


>gi|300690924|ref|YP_003751919.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum
           PSI07]
 gi|299077984|emb|CBJ50625.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum
           PSI07]
          Length = 238

 Score =  354 bits (908), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 129/239 (53%), Positives = 164/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ +Q+R ++LTR  +++AEGS LV FGDT +L TA++  KVP   + +  GW+T
Sbjct: 1   MRPSGRQPDQLRPVTLTRHYTRHAEGSVLVCFGDTQVLCTASVLPKVPPHKKGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGRA+RSV DLSALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGENTIHLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA HD +  M          + ++  VAA+S G++ G P++DLDY 
Sbjct: 121 ADGGTRTASITGAFVAAHDAVSVMR--GRGLLAGEPIRDFVAAVSVGVVDGAPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT SG  VEVQG+AE   F++    A+L LA   I  LI LQK  + 
Sbjct: 179 EDSACDTDMNVVMTGSGGFVEVQGTAEGTPFTRTEMDALLGLADQGIRTLIGLQKQALG 237


>gi|59710718|ref|YP_203494.1| ribonuclease PH [Vibrio fischeri ES114]
 gi|75431903|sp|Q5E8P0|RNPH_VIBF1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|59478819|gb|AAW84606.1| ribonuclease PH [Vibrio fischeri ES114]
          Length = 238

 Score =  354 bits (908), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 129/240 (53%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q+R I+LTR  + +AEGS LV+FG+T ++ TA++EE VP W++    GW+T
Sbjct: 1   MRPSGRTAQQVRPITLTRNFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA SG+QGGR+ EIQR+I R+LR+ VDL ALG + I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D + HM   +     S  +KGHVAA+S G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASITGASVALADAINHM--IATGKLKSNPMKGHVAAVSVGIYNGEAICDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VM + G ++EVQG+AE A FS      ML LA+  I D+I+ QK  ++ 
Sbjct: 179 EDSAADTDMNVVMMEDGKMIEVQGTAEEAPFSHQELLDMLALAQQGINDIIEKQKAALAE 238


>gi|197333899|ref|YP_002154880.1| ribonuclease PH [Vibrio fischeri MJ11]
 gi|226736949|sp|B5FFE2|RNPH_VIBFM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|197315389|gb|ACH64836.1| ribonuclease PH [Vibrio fischeri MJ11]
          Length = 238

 Score =  353 bits (907), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 129/240 (53%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q+R I+LTR  + +AEGS LV+FG+T ++ TA++EE VP W++    GW+T
Sbjct: 1   MRPSGRTAQQVRPITLTRNFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA SG+QGGR+ EIQR+I R+LR+ VDL ALG + I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D + HM   +     S  +KGHVAA+S G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASITGASVALADAINHM--IATGKLKSNPMKGHVAAVSVGIYNGEAICDLEYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VM + G ++EVQG+AE A FS      ML LA+  I D+I+ QK  ++ 
Sbjct: 179 EDSAADTDMNVVMMEDGKMIEVQGTAEEAPFSHQELLDMLALAQQGINDIIEKQKAALAE 238


>gi|320010557|gb|ADW05407.1| ribonuclease PH [Streptomyces flavogriseus ATCC 33331]
          Length = 245

 Score =  353 bits (906), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 119/241 (49%), Positives = 159/241 (65%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS LV FGDT +  TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  RE+V G+ GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L G VAAIS G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAIAWAQGKKIVKHGRKPLTGTVAAISVGIVDGTPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D   + D N V T  G  VEVQG+AE   F +D   A+L+LA    ADL KLQ++ ++  
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEAEPFDRDELNALLDLATAGCADLAKLQEEALART 242

Query: 242 V 242
           +
Sbjct: 243 L 243


>gi|330505631|ref|YP_004382500.1| ribonuclease PH [Pseudomonas mendocina NK-01]
 gi|328919917|gb|AEB60748.1| ribonuclease PH [Pseudomonas mendocina NK-01]
          Length = 239

 Score =  353 bits (906), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 168/239 (70%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVESGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L+ ++         + LK  +AA+S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALIDALKVLKKRGAL--KGEPLKQMIAAVSVGIYQGEPVLDLDYLE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT++G  +EVQG+AE A F  D F AML LA+  + ++ +LQK  + +
Sbjct: 181 DSAAETDLNVVMTNAGGFIEVQGTAEGAPFQPDEFNAMLALAQKGMNEIFELQKAALVD 239


>gi|126666552|ref|ZP_01737530.1| tRNA nucleotidyltransferase [Marinobacter sp. ELB17]
 gi|126628940|gb|EAZ99559.1| tRNA nucleotidyltransferase [Marinobacter sp. ELB17]
          Length = 238

 Score =  353 bits (906), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 131/240 (54%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q R+I +TR  +++AEGS L++FGDT ++ TA++E KVP ++R    GWIT
Sbjct: 1   MRPSGRTPEQPRDIRITRNYTRHAEGSVLIEFGDTKVICTASVENKVPPFLRGEGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+IGR+LR+ VDL ALG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTNSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLKALGEHTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG  VAL D L  +   + K      LK  VAA+S G+  G P+VDLDY 
Sbjct: 121 ADGGTRTAAITGGCVALVDALNFL--VAQKRLKKSPLKQMVAAVSVGVFKGKPVVDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMTD G  +E+QG+AE A F+Q+   +ML LAK  I  L  LQ + ++ 
Sbjct: 179 EDSVAETDMNVVMTDKGGFIEIQGTAEGAPFAQEELDSMLVLAKQGIETLFALQNEALNG 238


>gi|319780511|ref|YP_004139987.1| ribonuclease PH [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317166399|gb|ADV09937.1| ribonuclease PH [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 238

 Score =  353 bits (906), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 150/239 (62%), Positives = 187/239 (78%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S RQ ++MR IS  R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RN+  GW+T
Sbjct: 1   MRPSKRQFDEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG R++REA +G+QGGR+ EIQR+IGR+LR+VVDL ALG +QI +DCDVIQ
Sbjct: 61  AEYGMLPRSTGERMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG WVAL+DCL+ ME       +++VLK HVAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGGWVALYDCLRWME-ARQMASVAKVLKDHVAAISCGIHDGQPVIDLDYI 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    DANFVMT  G IVE+QG+AE   FS++ F  ++ LAK  I  L+ LQ+  ++
Sbjct: 180 EDSAAGTDANFVMTGKGGIVEIQGTAEGEPFSEEQFADLMGLAKKGIQRLVSLQQMAVA 238


>gi|149376205|ref|ZP_01893970.1| tRNA nucleotidyltransferase [Marinobacter algicola DG893]
 gi|149359610|gb|EDM48069.1| tRNA nucleotidyltransferase [Marinobacter algicola DG893]
          Length = 238

 Score =  353 bits (906), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 131/240 (54%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q R+I +TR  +++AEGS LV+FGDT ++ TA++E KVP ++R    GWIT
Sbjct: 1   MRPSGRTPEQPRDIRITRHYTRHAEGSVLVEFGDTKVICTASVENKVPPFLRGEGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R+ REA  G+QGGR+ EIQR+IGR+LR+ VDLSALG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLSALGEHSITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG  VAL D L H+         +  LK  +AA S G+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGGCVALVDALNHLVKEGRL--KTSPLKQMIAAFSVGVYKGTPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N +MTD G  +E+QG+AE A F Q+    ML LAK  I  L + QK  ++ 
Sbjct: 179 EDSEAETDMNVIMTDQGGFIEIQGTAEGAPFEQEELDGMLKLAKLGIGQLFEAQKAALAQ 238


>gi|256823650|ref|YP_003147613.1| ribonuclease PH [Kangiella koreensis DSM 16069]
 gi|256797189|gb|ACV27845.1| ribonuclease PH [Kangiella koreensis DSM 16069]
          Length = 238

 Score =  353 bits (906), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 121/239 (50%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  NQ+R I++TR+ +K+AEGS L++FG+T +L  A++ + VP +++    GWIT
Sbjct: 1   MRPSGRTSNQLRPITITRQFTKHAEGSVLIEFGETKVLCNASVVDNVPRFLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+IGR+LR+ VDLS LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRMDREASRGKQGGRTLEIQRLIGRSLRAAVDLSQLGENTIYVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA +ALHD L HM         +  LK  V ++S G+  G PI+DLDY 
Sbjct: 121 ADGGTRTASISGASIALHDALFHMRKTG--MIKTNPLKHMVGSVSVGIYKGTPILDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM ++G  +E+QG+AE  TF+ D    ML L K  I ++  LQ   ++
Sbjct: 179 EDSAAETDMNLVMDENGGFIEIQGTAEGETFTGDELMQMLELGKQGIREIFDLQHKAVA 237


>gi|221135142|ref|ZP_03561445.1| RNase PH (tRNA nucleotidyltransferase) [Glaciecola sp. HTCC2999]
          Length = 238

 Score =  353 bits (906), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 123/240 (51%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  NQ+R +++TR  + +AEGS LV+FG+T ++  AT+EE VP +++    GWIT
Sbjct: 1   MRPSGRTANQIRPVTITRHFTCHAEGSVLVEFGNTKVICNATVEEGVPRFMKGKGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYSMLPRATHSRSGREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L HM   S     +  LK  +AA+S G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALTHMR--SKGILKANPLKHMIAALSVGVYKGNAIADLEYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT++G ++EVQG+AE   FS +    ML+LAK  + +L  +QK  ++N
Sbjct: 179 EDSDAETDMNVVMTETGKLIEVQGTAEGEPFSFEEMSEMLDLAKHGLRELFDIQKTALNN 238


>gi|18311236|ref|NP_563170.1| ribonuclease PH [Clostridium perfringens str. 13]
 gi|168205082|ref|ZP_02631087.1| ribonuclease PH [Clostridium perfringens E str. JGS1987]
 gi|168211260|ref|ZP_02636885.1| ribonuclease PH [Clostridium perfringens B str. ATCC 3626]
 gi|168216782|ref|ZP_02642407.1| ribonuclease PH [Clostridium perfringens NCTC 8239]
 gi|169347042|ref|ZP_02865984.1| ribonuclease PH [Clostridium perfringens C str. JGS1495]
 gi|182625546|ref|ZP_02953317.1| ribonuclease PH [Clostridium perfringens D str. JGS1721]
 gi|21759399|sp|Q8XI67|RNPH_CLOPE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|18145919|dbj|BAB81960.1| ribonuclease PH [Clostridium perfringens str. 13]
 gi|169296725|gb|EDS78854.1| ribonuclease PH [Clostridium perfringens C str. JGS1495]
 gi|170663269|gb|EDT15952.1| ribonuclease PH [Clostridium perfringens E str. JGS1987]
 gi|170710734|gb|EDT22916.1| ribonuclease PH [Clostridium perfringens B str. ATCC 3626]
 gi|177909234|gb|EDT71699.1| ribonuclease PH [Clostridium perfringens D str. JGS1721]
 gi|182381123|gb|EDT78602.1| ribonuclease PH [Clostridium perfringens NCTC 8239]
          Length = 248

 Score =  352 bits (905), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 113/241 (46%), Positives = 160/241 (66%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR++ Q+R + +TR  +KYAEGS L++ GDT +L TA++EEKVP +++ +  GWIT
Sbjct: 1   MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASIEEKVPPFLKGSGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST +R +R+    +  GR+ EIQR+IGRALRS VD+ ALG + I IDCDV+Q
Sbjct: 61  AEYNMLPRSTQSRKQRDINKLKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG++VAL D +  +     K      ++  V+A+S G++    I+DL Y 
Sbjct: 121 ADGGTRTTSITGSFVALVDAVNKLHQ--KKPFNVYPIRHFVSAVSVGIVGEEKILDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED    VD N VMT+ G  +E+QG+ E   FS+     +LNLA+     +I+ QKD +  
Sbjct: 179 EDHVAKVDMNVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQAQKDALKT 238

Query: 241 E 241
           +
Sbjct: 239 D 239


>gi|127514416|ref|YP_001095613.1| ribonuclease PH [Shewanella loihica PV-4]
 gi|166228318|sp|A3QIQ6|RNPH_SHELP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|126639711|gb|ABO25354.1| RNAse PH [Shewanella loihica PV-4]
          Length = 237

 Score =  352 bits (905), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q R +++TR+ + +AEGS L++FG+T +L TA+  E VP +++    GW+T
Sbjct: 1   MRPSDRTPAQSRPVTITRQFTAHAEGSVLIEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+Q GR+QEIQR+IGRALR+ VD+ ALG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRAAVDMKALGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D L            +  LK  +AA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGLIKTNPLKFLIAAVSVGIYKGEPICDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G I+E+QG+AE   FS +   ++L+LAK  I +++ +QK  +S
Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLSLLDLAKHGIREIVDVQKAALS 237


>gi|168213163|ref|ZP_02638788.1| ribonuclease PH [Clostridium perfringens CPE str. F4969]
 gi|170715201|gb|EDT27383.1| ribonuclease PH [Clostridium perfringens CPE str. F4969]
          Length = 248

 Score =  352 bits (905), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 113/241 (46%), Positives = 160/241 (66%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR++ Q+R + +TR  +KYAEGS L++ GDT +L TA++EEKVP +++ +  GWIT
Sbjct: 1   MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASIEEKVPPFLKGSGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST +R +R+    +  GR+ EIQR+IGRALRS VD+ ALG + I IDCDV+Q
Sbjct: 61  AEYNMLPRSTQSRKQRDINKLKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG++VAL D +  +     K      ++  V+A+S G++    I+DL Y 
Sbjct: 121 ADGGTRTTSITGSFVALVDAVNKLHQ--KKPFNVYPIRHFVSAVSVGIVGEEKILDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED    VD N VMT+ G  +E+QG+ E   FS+     +LNLA+     +I+ QKD +  
Sbjct: 179 EDHIAKVDMNVVMTEEGEFIEIQGTGEAGPFSRKELDELLNLAEKGAKQMIQAQKDALKT 238

Query: 241 E 241
           +
Sbjct: 239 D 239


>gi|294142837|ref|YP_003558815.1| ribonuclease PH [Shewanella violacea DSS12]
 gi|293329306|dbj|BAJ04037.1| ribonuclease PH [Shewanella violacea DSS12]
          Length = 237

 Score =  352 bits (905), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 164/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q R +++TR+ + +AEGS LV+FG+T +L TA+ EE VP +++    GW+T
Sbjct: 1   MRPSDRTPAQSRPVTITRQFTAHAEGSVLVEFGETKVLCTASFEEGVPRFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGR+LR+ VD+ ALG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTHTRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D L            +  LK  +AA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G ++E+QG+AE   FS +   +ML LAK  I +++ +QK  ++
Sbjct: 179 EDSAAETDMNVVMTETGKMIEIQGTAEGEPFSHEELLSMLELAKHGIREIVDVQKAALN 237


>gi|209693820|ref|YP_002261748.1| ribonuclease PH [Aliivibrio salmonicida LFI1238]
 gi|226736880|sp|B6EPI9|RNPH_ALISL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|208007771|emb|CAQ77892.1| ribonuclease PH [Aliivibrio salmonicida LFI1238]
          Length = 238

 Score =  352 bits (904), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 127/240 (52%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q+R I++TR  + +AEGS LV+FG+T ++ TA++EE VP W++    GW+T
Sbjct: 1   MRPSGRTAQQVRPITITRHFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA SG+QGGR+ EIQR+I R+LR+ VDL ALG + I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNNREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D + HM       +    +KGHVAA+S G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASITGASVALADAINHMIASGKLKK--NPMKGHVAAVSVGIYKGEAICDLEYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VM + G ++EVQG+AE A FS      ML LA+  I D+I+ QK  ++ 
Sbjct: 179 EDSAADTDMNVVMMEDGKMIEVQGTAEVAPFSHQELLDMLALAQQGINDIIEKQKAALAE 238


>gi|94499853|ref|ZP_01306389.1| ribonuclease PH [Oceanobacter sp. RED65]
 gi|94428054|gb|EAT13028.1| ribonuclease PH [Oceanobacter sp. RED65]
          Length = 238

 Score =  352 bits (904), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 123/240 (51%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R++ +TR  +K+AEGS LV+ GDT ++  A++E KVP ++R    GW+T
Sbjct: 1   MRPSGRALDQLRDVKITRNFTKHAEGSVLVEVGDTKVICNASVENKVPPFLRGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R+ REA  G+QGGR+ EI R+IGR+LR+ VDL ALG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMIREAAKGKQGGRTVEISRLIGRSLRAAVDLEALGENSITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITGA VAL D +  M +       +  LK  +AA+S G+  G  I+DLDY 
Sbjct: 121 ADGGTRCASITGACVALADAINSMIEAGTL--KASPLKYMIAAVSVGVYEGQAILDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N +M D+G  VE+QG+AE   F  +   AML+LAK  +A++ ++QK  ++N
Sbjct: 179 EDSNAETDLNVIMADNGGFVEIQGTAEGEPFQPEELTAMLDLAKKGLAEITEIQKQSLAN 238


>gi|260463468|ref|ZP_05811668.1| ribonuclease PH [Mesorhizobium opportunistum WSM2075]
 gi|259030793|gb|EEW32069.1| ribonuclease PH [Mesorhizobium opportunistum WSM2075]
          Length = 238

 Score =  352 bits (904), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 151/239 (63%), Positives = 187/239 (78%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S RQ ++MR IS  R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RN+  GW+T
Sbjct: 1   MRPSKRQFDEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG R++REA +G+QGGR+ EIQR+IGR+LR+VVDL ALG +QI +DCDVIQ
Sbjct: 61  AEYGMLPRSTGERMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG WVAL+DCL+ ME       +S+VLK HVAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGGWVALYDCLRWME-ARQMTSVSKVLKDHVAAISCGIHDGQPVIDLDYI 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS+   DANFVMT  G IVE+QG+AE   FS+  F  ++ LAK  I  L+ LQ+  ++
Sbjct: 180 EDSSAGTDANFVMTGKGGIVEIQGTAEGEPFSEGQFADLMGLAKKGIQRLVSLQQMAVA 238


>gi|119773461|ref|YP_926201.1| ribonuclease PH [Shewanella amazonensis SB2B]
 gi|166228315|sp|A1S2C5|RNPH_SHEAM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|119765961|gb|ABL98531.1| RNAse PH [Shewanella amazonensis SB2B]
          Length = 237

 Score =  352 bits (904), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 123/239 (51%), Positives = 159/239 (66%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R   Q R IS+TR  + +AEGS LV+FG+T +L TA+  E VP +++ +  GW+T
Sbjct: 1   MRPGNRTPAQTRPISITRNFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGSGQGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+Q GR+QEIQR+IGRALR+ VDL  LG   I++DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRAAVDLKQLGENTIVVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D L            +  LK  +AA+S G+  G  I DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGLVKANPLKFLIAAVSVGIHNGEAICDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G I+EVQG+AE   F+ +    ML LAK  I ++I  QK  ++
Sbjct: 179 EDSAAETDMNVVMTETGKIIEVQGTAEGEPFTHEELLTMLELAKHGIREIIDTQKAALN 237


>gi|304310165|ref|YP_003809763.1| Ribonuclease PH [gamma proteobacterium HdN1]
 gi|301795898|emb|CBL44099.1| Ribonuclease PH [gamma proteobacterium HdN1]
          Length = 238

 Score =  352 bits (904), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 118/239 (49%), Positives = 164/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+  ++R+I++TR  + +AEGS LV+FG+T ++ TA+  E VP +++ T  GW+T
Sbjct: 1   MRPSGRKPEELRKINITRDYTCHAEGSVLVEFGNTKVICTASATEGVPRFLKGTGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHDRMDREASRGKQGGRTLEIQRLIARSLRAAVDLKLLGENTIYVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG  VAL D L  +       Q    L+  +A++S G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGGCVALVDALSFLLKKGTIKQ--DPLQRLIASVSVGIYKGVPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT  G +VEVQG+AE   F+++   AM+ LA+  I +L  LQ+  ++
Sbjct: 179 EDSKAETDMNVVMTQHGGLVEVQGTAEAEPFTREQMNAMMELAEKGIGELFLLQQKALN 237


>gi|254502638|ref|ZP_05114789.1| ribonuclease PH [Labrenzia alexandrii DFL-11]
 gi|222438709|gb|EEE45388.1| ribonuclease PH [Labrenzia alexandrii DFL-11]
          Length = 272

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 147/238 (61%), Positives = 184/238 (77%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R ++L R VSK+AEGSCLVKFGDTH+L TA+LEE+VP W+R    GW+T
Sbjct: 36  MRPSKRAADELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRGQNKGWVT 95

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG+R++REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG  QI +DCDVIQ
Sbjct: 96  AEYGMLPRATGSRMRREASAGKQSGRTQEIQRLIGRSLRAVVDLQALGEVQISVDCDVIQ 155

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVAL DC++ M+  +       VL  H+AAISCG+    P++DLDY 
Sbjct: 156 ADGGTRTAAITGAWVALRDCVEWMK--ARDMVSGDVLTDHIAAISCGIYESTPVLDLDYD 213

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDST + DANFVMT SG IVE+QG+AE   FS+D F  ++NLAK  I  L+ LQK  I
Sbjct: 214 EDSTAETDANFVMTGSGGIVEIQGTAEGKPFSEDEFGQLMNLAKAGIKRLVDLQKMAI 271


>gi|283458297|ref|YP_003362916.1| RNase PH [Rothia mucilaginosa DY-18]
 gi|283134331|dbj|BAI65096.1| RNase PH [Rothia mucilaginosa DY-18]
          Length = 243

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 111/238 (46%), Positives = 163/238 (68%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  N++R I++TR  S+ AEGS L++FG+T +L TA+  E VP W++    GW+TA
Sbjct: 5   REDGRALNELRPITITRGWSRNAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGKGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE++ GR GGR+ EI R+IGR+LR+V+++  LG   I++DCDV+QA
Sbjct: 65  EYAMLPRATNTRSSRESLKGRVGGRTHEISRLIGRSLRAVINMDELGENTIVLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +   ++       +  L   V+AIS G++ G P++DL Y E
Sbjct: 125 DGGTRTASITGAYVALADAISWAKEQKILPAKANPLIDSVSAISVGIIDGTPMLDLPYTE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   + D N V+T SG  VEVQG+AE A F +D   ++L+LA +  A+L ++Q++ ++
Sbjct: 185 DVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNSLLDLALEGTAELAQIQREALA 242


>gi|146309400|ref|YP_001189865.1| ribonuclease PH [Pseudomonas mendocina ymp]
 gi|166228302|sp|A4Y0L7|RNPH_PSEMY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145577601|gb|ABP87133.1| RNAse PH [Pseudomonas mendocina ymp]
          Length = 239

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 169/239 (70%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVESGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L+ ++   +     + LK  +AA+S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALIDALKVLKKRGSL--KGEPLKQMIAAVSVGIYQGEPVLDLDYLE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT++G  +EVQG+AE A F  + F AML LA+  + ++ +LQK  + +
Sbjct: 181 DSAAETDLNVVMTNAGGFIEVQGTAEGAPFQPEEFNAMLALAQKGMNEIFELQKAALVD 239


>gi|209519146|ref|ZP_03267951.1| ribonuclease PH [Burkholderia sp. H160]
 gi|209500446|gb|EEA00497.1| ribonuclease PH [Burkholderia sp. H160]
          Length = 245

 Score =  352 bits (903), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 129/238 (54%), Positives = 169/238 (71%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGRQ NQ+R++ +TR  +K+AEGS LV+FGDT ++ TA++ E VP ++R+   GW+TA
Sbjct: 7   RPSGRQPNQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASISESVPPFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALRSV DL  LG+R + +DCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLNLDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   +     S  +  +VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVAKL--LATGRIESSPINDYVAAISVGVYDGVPVLDLDYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMT +G  VE+QG+AE   FS+D   A+L+LA D I+ LI  QK  + 
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMSALLDLASDGISTLIAKQKAALG 242


>gi|241663552|ref|YP_002981912.1| ribonuclease PH [Ralstonia pickettii 12D]
 gi|240865579|gb|ACS63240.1| ribonuclease PH [Ralstonia pickettii 12D]
          Length = 238

 Score =  352 bits (903), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 127/239 (53%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ +Q+R ++LTR  +++AEGS LV FGDT +L TA++  KVP   + +  GW+T
Sbjct: 1   MRPSGRQPDQLRPVTLTRNFTRHAEGSVLVCFGDTQVLCTASVLPKVPPHKKGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGRA+RSV DL ALG   + +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLRALGEHTLHLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA +D +  M +          ++  VAA+S G++ G P++DLDY 
Sbjct: 121 ADGGTRTASITGAFVAAYDAVSVMREKGQLV--GNPIRDFVAAVSVGVVDGVPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT SG  VEVQG+AE   FS+    A+L LA   I  LI LQK  + 
Sbjct: 179 EDSACDTDMNVVMTGSGGFVEVQGTAEGTPFSRAEMDALLGLADQGIRTLIGLQKQALG 237


>gi|330812597|ref|YP_004357059.1| ribonuclease PH [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327380705|gb|AEA72055.1| ribonuclease PH [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 240

 Score =  351 bits (902), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 121/239 (50%), Positives = 165/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  +       +    LK  +AA+S GM  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALVDAL-KVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  +   AML LAK  + ++ +LQK  +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLELAKKGMNEIFELQKAALAD 240


>gi|90581389|ref|ZP_01237184.1| putative ribonuclease PH [Vibrio angustum S14]
 gi|90437366|gb|EAS62562.1| putative ribonuclease PH [Vibrio angustum S14]
          Length = 238

 Score =  351 bits (902), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 128/240 (53%), Positives = 170/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q+R I++TR+ + +AEGS LV+FG+T ++ TA++EE VP W++    GW+T
Sbjct: 1   MRPSGRSATQVRPITITRQYTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA SG+QGGR+ EIQR+I R+LR+ VDL+ LG + I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLNVLGEQMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D + +M +          LKG VAA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTASITGAMVALVDAINYMLE--KGMIKKSPLKGMVAAVSVGIYKGEPICDLEYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G ++E+QG+AE   FS +   AML LAKD I D+I +QK  + N
Sbjct: 179 EDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGITDIISMQKQALEN 238


>gi|120553485|ref|YP_957836.1| ribonuclease PH [Marinobacter aquaeolei VT8]
 gi|166228289|sp|A1TY30|RNPH_MARAV RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|120323334|gb|ABM17649.1| RNAse PH [Marinobacter aquaeolei VT8]
          Length = 238

 Score =  351 bits (902), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 133/239 (55%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q R++ +TR  +++AEGS LV+FGDT ++ TA++E KVP ++R    GWIT
Sbjct: 1   MRPSGRTPEQPRDVRITRNYTRHAEGSVLVEFGDTKVICTASVENKVPPFLRGEGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R+ REA  G+QGGR+ EIQR+IGR+LR+ VDL ALG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLEALGEHTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG  VAL D L H+     K      LK  VAA+S G+  G P+ DLDY 
Sbjct: 121 ADGGTRTAAITGGCVALVDALNHLVK--EKRLKKSPLKQMVAAVSVGVYRGTPVADLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N +MTD G  +E+QG+AE A F Q    AML LA+  I  L +LQK+ +S
Sbjct: 179 EDSEAETDMNVIMTDQGGFIEIQGTAEGAPFEQAELDAMLALARKAIDQLFELQKEALS 237


>gi|205354664|ref|YP_002228465.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|226736934|sp|B5RG80|RNPH_SALG2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|205274445|emb|CAR39477.1| RNase PH [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|326629803|gb|EGE36146.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 238

 Score =  351 bits (902), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 126/240 (52%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   +N    +  +KG VAA+S G++ G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   FS +    +L+LA+  I  ++  QK  + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLSLARGGIESIVATQKAALEN 238


>gi|224824865|ref|ZP_03697972.1| ribonuclease PH [Lutiella nitroferrum 2002]
 gi|224603358|gb|EEG09534.1| ribonuclease PH [Lutiella nitroferrum 2002]
          Length = 238

 Score =  351 bits (902), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 130/240 (54%), Positives = 174/240 (72%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  + +R ++LTR  +K+AEGS LV+FGDT ++ TA+++E VP +++    GW+T
Sbjct: 1   MRPSSRPNDALRRVTLTRGYTKHAEGSVLVEFGDTKVICTASVDESVPGFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R++REA SG+Q GR+QEIQR+IGR+LR+VVDL  LG RQI IDCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMRREAASGKQSGRTQEIQRLIGRSLRAVVDLGKLGERQIQIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VALHD +  +   +        ++  VAA+S G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAFVALHDAISGL--IAQGKLQESPIRDFVAAVSVGVFEGRPVLDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT SGH VEVQG+AE   FS+    AML LA+  + +LI +QK  ++ 
Sbjct: 179 EDSACETDMNVVMTGSGHFVEVQGTAEGVPFSRAELDAMLRLAEQGVGELIAIQKAALAG 238


>gi|330815847|ref|YP_004359552.1| Ribonuclease PH [Burkholderia gladioli BSR3]
 gi|327368240|gb|AEA59596.1| Ribonuclease PH [Burkholderia gladioli BSR3]
          Length = 243

 Score =  351 bits (902), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 130/239 (54%), Positives = 170/239 (71%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+RE+ LTR  +K+AEGS LV+FGDT ++ TA++ E+VP ++R+   GW+TA
Sbjct: 7   RPSGRPADQLREVRLTRHYTKHAEGSVLVEFGDTKVICTASVVERVPEFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+VVDL  LG+R I IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVVDLEQLGARTIHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA+ D +  +         S  +   VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAVQDAVAKLIAAGKL--ASSPITDSVAAISVGVYQGTPVLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  D D N VMT  G +VEVQG+AE   F++D   A+L+LA+  I +LI LQK  + +
Sbjct: 185 DSRCDTDMNVVMTGKGGLVEVQGTAEGVPFTRDEMNALLDLAQKGIGELIALQKAALGD 243


>gi|83746454|ref|ZP_00943505.1| Ribonuclease PH [Ralstonia solanacearum UW551]
 gi|207723807|ref|YP_002254205.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein
           [Ralstonia solanacearum MolK2]
 gi|207743767|ref|YP_002260159.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein
           [Ralstonia solanacearum IPO1609]
 gi|300703571|ref|YP_003745173.1| RNAse ph (tRNA nucleotidyltransferase) [Ralstonia solanacearum
           CFBP2957]
 gi|83726785|gb|EAP73912.1| Ribonuclease PH [Ralstonia solanacearum UW551]
 gi|206589012|emb|CAQ35974.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein
           [Ralstonia solanacearum MolK2]
 gi|206595166|emb|CAQ62093.1| ribonuclease ph (rnase ph) (trnanucleotidyltransferase) protein
           [Ralstonia solanacearum IPO1609]
 gi|299071234|emb|CBJ42552.1| RNase PH (tRNA nucleotidyltransferase) [Ralstonia solanacearum
           CFBP2957]
          Length = 238

 Score =  351 bits (901), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 127/239 (53%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ +Q+R ++LTR  +++AEGS LV FGDTH+L TA++  KVP   + +  GW+T
Sbjct: 1   MRPSGRQPDQLRSVTLTRHYTRHAEGSVLVCFGDTHVLCTASVLPKVPPHKKGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGRA+RSV DLSALG   + +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTLHLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA +D +  M          + ++  VAA+S G++ G P++DLDY 
Sbjct: 121 ADGGTRTASITGAFVAAYDAVSVMR--GKGLLTGEPIRDFVAAVSVGVVDGVPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT +G  VEVQG+AE   F++    A+L LA   I  LI LQK  + 
Sbjct: 179 EDSACDTDMNVVMTGNGGFVEVQGTAEGTPFTRTEMDALLGLADQGIRTLIGLQKQALG 237


>gi|255326296|ref|ZP_05367382.1| tRNA nucleotidyltransferase [Rothia mucilaginosa ATCC 25296]
 gi|255296750|gb|EET76081.1| tRNA nucleotidyltransferase [Rothia mucilaginosa ATCC 25296]
          Length = 243

 Score =  351 bits (901), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 110/238 (46%), Positives = 162/238 (68%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  N++R I++TR  S+ AEGS L++FG+T +L TA+  E VP W++    GW+TA
Sbjct: 5   REDGRALNELRPITITRGWSRNAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGKGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE++ GR GGR+ EI R+IGR+LR+V+++  LG   I++DCDV+QA
Sbjct: 65  EYAMLPRATNTRSSRESLKGRVGGRTHEISRLIGRSLRAVINMDELGENTIVLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +   ++       +  L   V+AIS G++ G P++DL Y E
Sbjct: 125 DGGTRTASITGAYVALADAISWAKEQKILPAKANPLIDSVSAISVGIIDGTPMLDLPYTE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   + D N V+T SG  VEVQG+AE   F +D   ++L+LA +  A+L ++Q++ ++
Sbjct: 185 DVRAETDMNVVVTGSGKFVEVQGTAEGVPFDRDELNSLLDLALEGTAELAQIQREALA 242


>gi|254472318|ref|ZP_05085718.1| ribonuclease PH [Pseudovibrio sp. JE062]
 gi|211958601|gb|EEA93801.1| ribonuclease PH [Pseudovibrio sp. JE062]
          Length = 239

 Score =  351 bits (901), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 144/234 (61%), Positives = 184/234 (78%), Gaps = 1/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R S R   +MR +SL R V+K+AEGSCL+KFGDTH+L TA+LEE+VP W+R    GW+TA
Sbjct: 3   RPSKRTPEEMRPVSLERGVAKHAEGSCLIKFGDTHVLCTASLEERVPPWLRGQNRGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T +R++RE+ +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQA
Sbjct: 63  EYGMLPRATHDRMRRESSAGKQSGRTQEIQRLIGRSLRAVVDLGALGERQITVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGAWVALHDCL+ ME   +  +  +VLK H+AAISCG+  G P+ DLDY E
Sbjct: 123 DGGTRTASITGAWVALHDCLKWME-ARDMVKTDKVLKDHIAAISCGIYEGTPVADLDYAE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DS+ D DANFVMT  G IVE+QG+AE   FS++    ++ LAK  I+ L++LQK
Sbjct: 182 DSSADTDANFVMTGKGGIVEIQGTAEGEPFSEEELGQLMGLAKQSISKLVELQK 235


>gi|309812199|ref|ZP_07705957.1| tRNA nucleotidyltransferase [Dermacoccus sp. Ellin185]
 gi|308433886|gb|EFP57760.1| tRNA nucleotidyltransferase [Dermacoccus sp. Ellin185]
          Length = 255

 Score =  351 bits (901), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 126/238 (52%), Positives = 165/238 (69%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+RE+ +TR    +AEGSCLV+FG T +L  A+  E VP W++    GW+T+
Sbjct: 10  RHDGRTPDQLREVRITRNWLDHAEGSCLVEFGRTRVLCAASFTEGVPRWLKGQGTGWVTS 69

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  REA  G+ GGR+ EI R+IGR+LR+V+D  ALG   I+IDCDV+QA
Sbjct: 70  EYEMLPRSTNTRSDREARKGKVGGRTHEISRLIGRSLRAVIDTKALGENTIVIDCDVLQA 129

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +   +      + ++ L   VAAIS G++ G P++DLDY E
Sbjct: 130 DGGTRTASITGAYVALADAIADAQARGLIAKKAKPLTDSVAAISVGIVAGQPVLDLDYPE 189

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DST + D N VMT SG IVEVQG+AE A FS+D   A+L+LA D IADL   Q+D ++
Sbjct: 190 DSTAETDMNVVMTGSGGIVEVQGTAEGAPFSRDELNALLDLAADGIADLTTKQRDALA 247


>gi|254491824|ref|ZP_05105003.1| ribonuclease PH [Methylophaga thiooxidans DMS010]
 gi|224463302|gb|EEF79572.1| ribonuclease PH [Methylophaga thiooxydans DMS010]
          Length = 239

 Score =  351 bits (901), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 128/240 (53%), Positives = 176/240 (73%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ N++R++S+TR  +K+AEGS LV+FGDT +L TA++EE++P ++R +  GW+T
Sbjct: 1   MRPSGRQANELRQVSITRNYTKHAEGSVLVEFGDTKVLCTASVEERIPPFLRGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R++REA  G+QGGR+ EIQR+IGR+LR+ ++L ALG R I IDCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMQREAARGKQGGRTMEIQRLIGRSLRAAINLKALGERSITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D + H+     K      L G VA++S G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAFVALQDAINHL--IKTKKLKKSPLFGQVASVSVGIYNGTPVLDLDYD 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS+ + D N VM D+G  +E+QG+AE   F  D   +ML+LA   I  L+  Q+D ++ 
Sbjct: 179 EDSSAETDMNVVMNDAGAYIELQGTAEGHAFRADELQSMLDLASHGIEQLMIKQRDALAE 238


>gi|304392746|ref|ZP_07374686.1| ribonuclease PH [Ahrensia sp. R2A130]
 gi|303295376|gb|EFL89736.1| ribonuclease PH [Ahrensia sp. R2A130]
          Length = 239

 Score =  350 bits (900), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 141/233 (60%), Positives = 181/233 (77%), Gaps = 2/233 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  ++MR +++ R  SK+AEGSCL+KFGDTH+L TA+LEE+VP W+R    GW+TA
Sbjct: 5   RPSGRAPDEMRAVTIERGFSKHAEGSCLIKFGDTHVLCTASLEERVPPWLRGAGKGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R++REA +G+Q GR+QEIQR+IGR+LR+VVD+ ALG RQI +DCDVIQA
Sbjct: 65  EYGMLPRSTGGRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMKALGERQISLDCDVIQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL +CL  M+  +       VL  +VAAISCG+  G P++DLDY E
Sbjct: 125 DGGTRTASITGAYVALKECLDWMQ--ARSMIGGDVLIDNVAAISCGIYEGTPVLDLDYDE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           DS  D DANFVMT  G IVE+QG+AE A FS++ F A+++LA   I +L+ LQ
Sbjct: 183 DSEADTDANFVMTGKGGIVEIQGTAEAAPFSREEFSALMDLASKGIGELVDLQ 235


>gi|237756090|ref|ZP_04584666.1| ribonuclease PH [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691740|gb|EEP60772.1| ribonuclease PH [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 257

 Score =  350 bits (900), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 116/240 (48%), Positives = 155/240 (64%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+  Q+R I +TR  + YAEGS L++FG+T ++ TA++E+KVP +++ T  GWIT
Sbjct: 1   MRPDGRKPAQLRPIKITRDFNIYAEGSVLIEFGNTKVIVTASVEDKVPPFLKGTGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR++  R  RE V G   GR+ EIQR+IGR+LR+ VDL  LG + I IDCDVIQ
Sbjct: 61  AEYSMIPRASETRSLREVVRGSPSGRTHEIQRLIGRSLRAAVDLKKLGEKTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITGA++A+ D    +         +  LK +VAAIS G +    ++DL+Y 
Sbjct: 121 ADGGTRVASITGAFIAVADACIKL--TKQNLVKANPLKDYVAAISIGKVRNEIVLDLNYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VMT  G  VE+  + E  TFSQ+ F  ML   K  I  LIK+QK+ I  
Sbjct: 179 EDSNAQVDMNLVMTGKGEFVEIGATGEENTFSQEDFNKMLEYGKSGIERLIKIQKEFIEG 238


>gi|77461768|ref|YP_351275.1| ribonuclease PH [Pseudomonas fluorescens Pf0-1]
 gi|123602792|sp|Q3K4M0|RNPH_PSEPF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|77385771|gb|ABA77284.1| ribonuclease PH [Pseudomonas fluorescens Pf0-1]
          Length = 240

 Score =  350 bits (900), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 164/239 (68%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDLTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  +       +    LK  + A+S GM  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALVDAL-KVIKKRGGLKGGDPLKQMIGAVSVGMYQGEPVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  +   AML LAK  + ++ +LQK  +++
Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPEELNAMLELAKKGMNEIFELQKAALAD 240


>gi|302877637|ref|YP_003846201.1| ribonuclease PH [Gallionella capsiferriformans ES-2]
 gi|302580426|gb|ADL54437.1| ribonuclease PH [Gallionella capsiferriformans ES-2]
          Length = 238

 Score =  350 bits (900), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 130/240 (54%), Positives = 171/240 (71%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S RQ NQ+REI +TR  +K+AEGS L++ GDT ++ TA++EE+VP   + +  GW+T
Sbjct: 1   MRPSSRQANQLREIRITRHYTKHAEGSVLIECGDTKVICTASVEERVPPHKKGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R++REA  G+Q GR+QEIQR+IGR+LR+VVDL  LG R I IDCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMQREAAKGKQSGRTQEIQRLIGRSLRAVVDLKKLGERTIQIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D +  + +          +   +AAIS G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAYVALQDAVSSLIE--KGLLTETPVTDAIAAISVGIYQGTPVLDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VM  SGH VEVQG+AE   FS+     +L LA++ I DLIK+Q+  ++ 
Sbjct: 179 EDSACDTDMNVVMLGSGHFVEVQGTAEGHAFSRVEMDQLLELAQNGIVDLIKMQQAALAG 238


>gi|49082078|gb|AAT50439.1| PA5334 [synthetic construct]
          Length = 240

 Score =  350 bits (900), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 123/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T + E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTRVICTVSAESGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R +REA  G+QG R+ EIQR+IGR+LR+ +DLS LG   + IDCDVIQA
Sbjct: 63  EYGMLPRSTGERNQREASRGKQGSRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++           LK  VAA+S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGATVALIDALAVLKKRGAL--KGNPLKQMVAAVSVGIYQGVPVLDLDYLE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMTD+G  +EVQG+AE A F      AML LA+  + +L +LQ+  ++ 
Sbjct: 181 DSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALAE 239


>gi|89076053|ref|ZP_01162413.1| putative ribonuclease PH [Photobacterium sp. SKA34]
 gi|89048205|gb|EAR53787.1| putative ribonuclease PH [Photobacterium sp. SKA34]
          Length = 238

 Score =  350 bits (900), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 127/240 (52%), Positives = 169/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q+R I++TR+ + +AEGS LV+FG+T ++ TA++EE VP W++    GW+T
Sbjct: 1   MRPSGRSATQVRPITITRQYTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA SG+QGGR+ EIQR+I R+LR+ VDL  LG + I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLKILGEQMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D + +M +  N       LK  VAA+S G+  G P  DL+Y 
Sbjct: 121 ADGGTRTASITGAMVALVDAINYMLE--NGMIKKSPLKSMVAAVSVGIYKGEPTCDLEYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G ++E+QG+AE   FS +   AML LAKD I+D+I +QK  + N
Sbjct: 179 EDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGISDIISMQKKALEN 238


>gi|289625446|ref|ZP_06458400.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289646372|ref|ZP_06477715.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298484821|ref|ZP_07002921.1| Ribonuclease PH [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298160675|gb|EFI01696.1| Ribonuclease PH [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330866527|gb|EGH01236.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 240

 Score =  350 bits (900), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 121/239 (50%), Positives = 165/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  +       +    LK  +AA+S GM  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALADAL-KVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  +   AML LA+  I +L +LQ+  +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGITELFELQRAALAD 240


>gi|91784888|ref|YP_560094.1| ribonuclease PH [Burkholderia xenovorans LB400]
 gi|122970210|sp|Q13V47|RNPH_BURXL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|91688842|gb|ABE32042.1| RNAse PH [Burkholderia xenovorans LB400]
          Length = 246

 Score =  350 bits (900), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 129/240 (53%), Positives = 169/240 (70%), Gaps = 2/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGRQ +Q+R++ +TR  +K+AEGS LV+FGDT ++ TA++ E VP ++R+   GW+TA
Sbjct: 7   RPSGRQADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAESVPSFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALRSV DL  LG+R + IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   +     S  +  +VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVARL--LATGRIESSPITDYVAAISVGVYDGLPVLDLDYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  D D N VMT +G  VE+QG+AE   FS+D   A+L+LA D I  LI  QK  +  +
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMNALLDLASDGINTLIAKQKAALEQK 244


>gi|152978104|ref|YP_001343733.1| ribonuclease PH [Actinobacillus succinogenes 130Z]
 gi|171472953|sp|A6VLF1|RNPH_ACTSZ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|150839827|gb|ABR73798.1| ribonuclease PH [Actinobacillus succinogenes 130Z]
          Length = 238

 Score =  350 bits (900), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 124/240 (51%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  NQ R I +TR  +K+AEGS LV+FGDT +L TAT++E VP +++    GW+T
Sbjct: 1   MRPNNRAINQPRPIKITRHYTKHAEGSVLVEFGDTKVLCTATVDESVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSVTLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  + D  N       LKG VAAIS G++ G P+ DL+Y 
Sbjct: 121 ADGGTRTASITGACVALIDAVNGLVD--NGTLTVSPLKGLVAAISVGIVDGTPVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +    +LNLAK     + + Q+  +++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLNLAKQGCKRIFEAQRAALAD 238


>gi|311693191|gb|ADP96064.1| ribonuclease PH [marine bacterium HP15]
          Length = 238

 Score =  350 bits (900), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 132/239 (55%), Positives = 168/239 (70%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q R++ +TR  +++AEGS LV+FGDT ++ TA++E KVP ++R    GWIT
Sbjct: 1   MRPSGRTPEQPRDVRITRNYTRHAEGSVLVEFGDTKVICTASVENKVPPFLRGEGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R+ REA  G+QGGR+ EIQR+IGR+LR+ VDL+ALG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLTALGEHSITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG  VAL D L H+   ++K      LK  VAA+S G+  G P+VDLDY 
Sbjct: 121 ADGGTRTAAITGGCVALVDALNHL--VADKRLKKSPLKQMVAALSVGVYKGTPVVDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N +MTD G  +E+QG+AE A F Q    +ML LAK  I  L ++QK  + 
Sbjct: 179 EDSEAETDMNVIMTDQGGFIEIQGTAEGAPFDQSELDSMLTLAKQGIEQLFEIQKAALE 237


>gi|163757816|ref|ZP_02164905.1| ribonuclease PH [Hoeflea phototrophica DFL-43]
 gi|162285318|gb|EDQ35600.1| ribonuclease PH [Hoeflea phototrophica DFL-43]
          Length = 238

 Score =  350 bits (900), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 152/239 (63%), Positives = 192/239 (80%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR +S  R VSK+AEGSCLVKFGDTH+L TA+LEE+VP W+RN   GW+T
Sbjct: 1   MRPSGRKTDQMRAVSFERGVSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRNGGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R++REA SG+QGGR+ EIQR+IGR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRSTGDRMRREATSGKQGGRTLEIQRLIGRSLRAVVDLPALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAW+ALHDCL+ ME+ S   ++ +VLK HVAA+SCG+  G  + DLDY 
Sbjct: 121 ADGGTRTAAITGAWIALHDCLKWMEERS-MVKVERVLKDHVAAVSCGIFAGQAVTDLDYL 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS+ + DANFVMT +G IVE+QG+AE   F+++    ++ LAK  I DL+ LQK  ++
Sbjct: 180 EDSSAETDANFVMTGTGGIVEIQGTAEGEPFTEEQLGQLMGLAKAAINDLVALQKSAVA 238


>gi|170698512|ref|ZP_02889583.1| ribonuclease PH [Burkholderia ambifaria IOP40-10]
 gi|170136596|gb|EDT04853.1| ribonuclease PH [Burkholderia ambifaria IOP40-10]
          Length = 246

 Score =  350 bits (899), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 131/238 (55%), Positives = 172/238 (72%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ +++R+++LTR  +K+AEGS LV+FGDT ++ TA++ E+VP ++R+   GW+TA
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +            +  HVAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLIAAGKL--ARSPITDHVAAISVGVYEGVPLLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMT +G  VEVQG+AE A FS+    A+L+LA+  I  L++LQKDV+ 
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGAPFSRAEMNALLDLAQSGIGQLVQLQKDVLG 242


>gi|296160047|ref|ZP_06842867.1| ribonuclease PH [Burkholderia sp. Ch1-1]
 gi|295889793|gb|EFG69591.1| ribonuclease PH [Burkholderia sp. Ch1-1]
          Length = 246

 Score =  350 bits (899), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 129/240 (53%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGRQ +Q+R++ +TR  +K+AEGS LV+FGDT ++ TA++ E VP ++R+   GW+TA
Sbjct: 7   RPSGRQADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAESVPSFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALRSV DL  LG R + IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGVRTLHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   +     S  +  +VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVARL--LATGRIESSPITDYVAAISVGVYDGLPVLDLDYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  D D N VMT +G  VE+QG+AE   FS+D   A+L+LA D I  LI  QK  +  +
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMNALLDLASDGINTLIAKQKAALEQK 244


>gi|297194142|ref|ZP_06911540.1| ribonuclease PH [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721967|gb|EDY65875.1| ribonuclease PH [Streptomyces pristinaespiralis ATCC 25486]
          Length = 244

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 113/239 (47%), Positives = 153/239 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS L+ FGDT +  TA+  E VP W + +  GW+T+
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASFTEGVPRWRKGSGEGWVTS 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  RE+V G+ GGR+ EI R+IGR+LR+V+D  ALG   +++DCDV+QA
Sbjct: 63  EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L G VAA+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAIAWAQAKKIVKPGRKPLTGTVAAVSVGIVDGTPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   + D N V T  G  VEVQG+AE   F +    A+L+LA    ADL  LQ + +  
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLATGGCADLAALQAEALGQ 241


>gi|262374498|ref|ZP_06067772.1| ribonuclease PH [Acinetobacter junii SH205]
 gi|262310494|gb|EEY91584.1| ribonuclease PH [Acinetobacter junii SH205]
          Length = 238

 Score =  350 bits (898), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 123/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R  +Q+R++ +TR  ++YAEGS LV+FG T +L TA+++  VP +++    GW+T
Sbjct: 1   MRIDQRALDQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR++VDL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D +  +   SNK      LKG VAAIS GM     ++DL Y 
Sbjct: 121 ADGGTRTAAITGAAVALVDAMNVL--LSNKKIKHDPLKGLVAAISVGMYQDEVLLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N VMT +G  +E+QG+AE   F++    AML LA+  I++LI+ Q+  + 
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRQQCNAMLELAEKGISELIQKQQQALG 237


>gi|237797786|ref|ZP_04586247.1| ribonuclease PH [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020636|gb|EGI00693.1| ribonuclease PH [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 240

 Score =  350 bits (898), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 164/239 (68%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  +       +    LK  +AA+S GM  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALADAL-KVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT  G  +E+QG+AE A F  +   AML LAK  + +L +LQ+  +++
Sbjct: 182 DSAAETDLNVVMTSEGGFIEIQGTAEGAPFQPEELNAMLALAKKGMNELFELQRAALAD 240


>gi|153800847|ref|ZP_01955433.1| ribonuclease PH [Vibrio cholerae MZO-3]
 gi|124123678|gb|EAY42421.1| ribonuclease PH [Vibrio cholerae MZO-3]
          Length = 257

 Score =  350 bits (898), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 20  MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 80  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D   H+   +        +KGHVAA+S G+L G  + DL+Y 
Sbjct: 140 ADGGTRTASITGASVALADAFTHL--IAKGQLKKNPMKGHVAAVSVGILGGDVLCDLEYV 197

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK  + +
Sbjct: 198 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASLLD 257


>gi|311113412|ref|YP_003984634.1| tRNA nucleotidyltransferase [Rothia dentocariosa ATCC 17931]
 gi|310944906|gb|ADP41200.1| tRNA nucleotidyltransferase [Rothia dentocariosa ATCC 17931]
          Length = 245

 Score =  350 bits (898), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 117/239 (48%), Positives = 165/239 (69%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  N++R I++TR  S  AEGS LV+FGDT +L TA+  E VP W++    GW+TA
Sbjct: 6   RADGRALNELRPITITRGWSNQAEGSALVEFGDTRVLCTASFTEGVPRWLKGEGKGWVTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+TG R  RE+V G+ GGR+ EI R+IGR+LR+V+D++ALG   I++DCDV+QA
Sbjct: 66  EYAMLPRATGTRSSRESVKGKIGGRTHEISRLIGRSLRAVIDMNALGENTIVLDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +   +        ++ LK  V+AIS G++ G P++DL Y E
Sbjct: 126 DGGTRTASITGAYVALADSIAWAQRNGLLSPSAKPLKDSVSAISVGIIDGTPMLDLPYTE 185

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   + D N V+T SG  VEVQG+AE A F ++   A+L+LA +  A+L ++Q++ +  
Sbjct: 186 DVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRNELNALLDLALEGTAELARIQRESLEE 244


>gi|300741332|ref|ZP_07071353.1| tRNA nucleotidyltransferase [Rothia dentocariosa M567]
 gi|300380517|gb|EFJ77079.1| tRNA nucleotidyltransferase [Rothia dentocariosa M567]
          Length = 245

 Score =  350 bits (898), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 117/239 (48%), Positives = 164/239 (68%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  N++R I++TR  S  AEGS LV+FGDT +L TA+  E VP W++    GW+TA
Sbjct: 6   RADGRTLNELRPITITRGWSNQAEGSALVEFGDTRVLCTASFTEGVPRWLKGEGKGWVTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+TG R  RE+V G+ GGR+ EI R+IGR+LR+++D++ALG   I++DCDV+QA
Sbjct: 66  EYAMLPRATGTRSSRESVKGKIGGRTHEISRLIGRSLRAIIDMNALGENTIVLDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +   +         + LK  V+AIS G++ G P++DL Y E
Sbjct: 126 DGGTRTASITGAYVALADSIAWAQRNGLLSPSDKPLKDSVSAISVGIIDGTPMLDLPYTE 185

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   + D N V+T SG  VEVQG+AE A F +D   A+L+LA +  A+L ++Q++ +  
Sbjct: 186 DVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNALLDLALEGTAELARIQRESLEE 244


>gi|226311377|ref|YP_002771271.1| ribonuclease PH [Brevibacillus brevis NBRC 100599]
 gi|254808581|sp|C0ZAF8|RNPH_BREBN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226094325|dbj|BAH42767.1| ribonuclease PH [Brevibacillus brevis NBRC 100599]
          Length = 253

 Score =  349 bits (897), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 125/240 (52%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR  +Q+R +++TR   K+AEGSCL++ GDT ++ TATLEE+VP ++R    GWIT
Sbjct: 1   MRVDGRAHDQLRPVTITRNYIKHAEGSCLIEVGDTKVICTATLEERVPPFMRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+ GGR+ EIQR+IGRALRSVV+L A+G R I +DCDVIQ
Sbjct: 61  AEYSMLPRATATRNARESSKGKVGGRTMEIQRLIGRALRSVVNLEAMGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA+ D +Q + D     QL   L   +AA S G++    ++DL+Y 
Sbjct: 121 ADGGTRTASITGAFVAMVDAMQKLVDSGTWKQL--PLNDFLAATSVGVVGEEAVLDLNYK 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDST  VD N VMT  G  VE+QG+ E A FS +    M++LAK  I +LI  QK+ +++
Sbjct: 179 EDSTAIVDMNVVMTGKGKFVELQGTGEDAPFSPEQLQEMISLAKVGIDNLIHSQKEALAD 238


>gi|146280858|ref|YP_001171011.1| ribonuclease PH [Pseudomonas stutzeri A1501]
 gi|166228304|sp|A4VGR8|RNPH_PSEU5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145569063|gb|ABP78169.1| ribonuclease PH [Pseudomonas stutzeri A1501]
 gi|327479126|gb|AEA82436.1| ribonuclease PH [Pseudomonas stutzeri DSM 4166]
          Length = 240

 Score =  349 bits (897), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 168/239 (70%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ TA++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTASIETGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + IDCDVIQA
Sbjct: 63  EYGMLPRATGERNQREAARGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VA+ D L+ ++      +    +K  +AA+S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVAVIDALKVLKKRG-GLKGGDPVKQMIAAVSVGIYQGEPVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMTD+G  +EVQG+AE A F  D   AML LA D +  L +LQ+  +++
Sbjct: 182 DSAAETDLNVVMTDAGGFIEVQGTAEGAPFHADELNAMLALAHDGVRQLFELQRAALAD 240


>gi|295396715|ref|ZP_06806861.1| tRNA nucleotidyltransferase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970461|gb|EFG46390.1| tRNA nucleotidyltransferase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 248

 Score =  349 bits (897), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 121/242 (50%), Positives = 167/242 (69%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GRQ N++RE+ +TR    +AEGS LV+FG T +L  A+L E VP W++    GW T
Sbjct: 1   MRFDGRQANELREVKITRGWLDHAEGSVLVEFGRTRVLCAASLTEGVPRWMKGEGRGWAT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+V+DLS LG   + +DCDV+Q
Sbjct: 61  AEYAMLPRATHTRSSRESVKGKIGGRTHEISRLIGRSLRAVLDLSKLGENTLQVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D +   ++     + ++VLK  VAAIS G++ G P++DL Y 
Sbjct: 121 ADGGTRTAAITGAYVALVDAVAKGKELGWIPKNAEVLKDSVAAISVGIVDGTPVLDLPYE 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDST + D N VMT SG  VEVQG+AE A F +    ++L+LA+   A+L ++Q   ++ 
Sbjct: 181 EDSTAETDMNVVMTGSGAFVEVQGTAEGAPFDRAELGSLLDLAEHGCAELARIQASALAQ 240

Query: 241 EV 242
           ++
Sbjct: 241 DL 242


>gi|187925061|ref|YP_001896703.1| ribonuclease PH [Burkholderia phytofirmans PsJN]
 gi|226736896|sp|B2T6B5|RNPH_BURPP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|187716255|gb|ACD17479.1| ribonuclease PH [Burkholderia phytofirmans PsJN]
          Length = 246

 Score =  349 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 130/240 (54%), Positives = 169/240 (70%), Gaps = 2/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGRQ NQ+R++ +TR  +K+AEGS LV+FGDT ++ TA++ E VP ++R+   GW+TA
Sbjct: 7   RPSGRQANQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAESVPSFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALRSV DL  LG+R + IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +   +     S  +  +VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVAKL--LATGRIESSPITDYVAAISVGVYDGLPVLDLDYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  D D N VMT +G  VE+QG+AE   FS+D   A+L+LA D I  LI  QK  +  +
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVAFSRDEMNALLDLASDGINTLIAKQKAALEQK 244


>gi|110833067|ref|YP_691926.1| ribonuclease PH [Alcanivorax borkumensis SK2]
 gi|123345879|sp|Q0VT66|RNPH_ALCBS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|110646178|emb|CAL15654.1| ribonuclease PH [Alcanivorax borkumensis SK2]
          Length = 238

 Score =  349 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+RE+S TR  + +AEGS LV FG+T +L TA++E+ VP +++    GW+T
Sbjct: 1   MRPSGRAPDQLRELSFTRNYTVHAEGSVLVAFGNTKVLCTASVEDGVPRFLKGKGQGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST  R  REA  G+QGGR+ EIQR+IGR+LR+ VD+ ALG R I +DCDV+Q
Sbjct: 61  AEYSMLPRSTHTRSGREATRGKQGGRTLEIQRLIGRSLRAAVDMKALGERTIYLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D   ++ +   K   +  L G V A+S GM    P++DLDY 
Sbjct: 121 ADGGTRTASISGACVALVDAFTYLLE--TKKIKNDPLTGLVGAVSVGMYKDTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N VMT  G  +E+QGSAE A F+++    +L LA++ I ++IK Q+  + 
Sbjct: 179 EDSNAGTDMNVVMTQQGGFIEIQGSAEGAPFTREQSDNLLELAENGIGEIIKAQQVALG 237


>gi|171315534|ref|ZP_02904770.1| ribonuclease PH [Burkholderia ambifaria MEX-5]
 gi|172059924|ref|YP_001807576.1| ribonuclease PH [Burkholderia ambifaria MC40-6]
 gi|226736891|sp|B1YUN3|RNPH_BURA4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|171099371|gb|EDT44109.1| ribonuclease PH [Burkholderia ambifaria MEX-5]
 gi|171992441|gb|ACB63360.1| ribonuclease PH [Burkholderia ambifaria MC40-6]
          Length = 246

 Score =  349 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 130/238 (54%), Positives = 171/238 (71%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ +++R+++LTR  +K+AEGS LV+FGDT ++ TA++ E+VP ++R+   GW+TA
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +            +  HVAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLIAAGKL--ARSPITDHVAAISVGVYEGVPLLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMT +G  VEVQG+AE   FS+    A+L+LA+  I  L++LQKDV+ 
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQSGIGQLVQLQKDVLG 242


>gi|326779081|ref|ZP_08238346.1| ribonuclease PH [Streptomyces cf. griseus XylebKG-1]
 gi|326659414|gb|EGE44260.1| ribonuclease PH [Streptomyces cf. griseus XylebKG-1]
          Length = 245

 Score =  349 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 117/239 (48%), Positives = 155/239 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS L+ FGDT +  TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  REAV G+ GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L   VAAIS G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   + D N V T  G  VEVQG+AE A F +    A+L+LA     DL  LQ+D ++ 
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRKELGALLDLATAGCVDLAALQRDALAT 241


>gi|282865124|ref|ZP_06274177.1| ribonuclease PH [Streptomyces sp. ACTE]
 gi|282560047|gb|EFB65596.1| ribonuclease PH [Streptomyces sp. ACTE]
          Length = 245

 Score =  349 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 115/241 (47%), Positives = 158/241 (65%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS L+ FGDT +  TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  RE+V G+ GGR+ EI R+IGR+LR+V+D  ALG   +++DCDV+QA
Sbjct: 63  EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L G VAA+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGKKIVKHGRKPLTGTVAAVSVGIVDGTPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D   + D N V T  G  VEVQG+AE A F +    A+L+LA     DL KLQ++ ++  
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEAAPFDRSELDALLDLATAGCVDLAKLQQEALART 242

Query: 242 V 242
           +
Sbjct: 243 L 243


>gi|119900252|ref|YP_935465.1| ribonuclease PH [Azoarcus sp. BH72]
 gi|166228264|sp|A1KCM3|RNPH_AZOSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|119672665|emb|CAL96579.1| ribonuclease PH [Azoarcus sp. BH72]
          Length = 239

 Score =  349 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 131/240 (54%), Positives = 176/240 (73%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S RQ N++R + LTRR +++AEGS LV+FGDT +L TA++EE VP +++    GW+T
Sbjct: 1   MRPSQRQANELRPVRLTRRYTRHAEGSVLVEFGDTRVLCTASVEEAVPPFLKGKGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVDL+ALG RQ++IDCDV+Q
Sbjct: 61  AEYGMLPRATHTRSAREAAKGKQTGRTQEIQRLIGRSLRAVVDLAALGERQVVIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VALHD L+ +         +  +   VAAIS G++ G P++DLDY 
Sbjct: 121 ADGGTRTASITGAYVALHDALEGLVAAGKL--AANPMTDFVAAISVGIVDGVPVLDLDYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT SG I+EVQG+AE   FS+    A+++LA+  I  L++LQK  ++ 
Sbjct: 179 EDSGCDTDMNVVMTGSGGIIEVQGTAEGTPFSRTELNALIDLAEAGIGRLVELQKAALAG 238


>gi|251791523|ref|YP_003006244.1| ribonuclease PH [Dickeya zeae Ech1591]
 gi|247540144|gb|ACT08765.1| ribonuclease PH [Dickeya zeae Ech1591]
          Length = 238

 Score =  349 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++ TR  +K+AEGS LV+FGDT +L  AT+EE VP +++    GWIT
Sbjct: 1   MRPTGRSAQQIRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL+ LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLNKLGEYTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   +     +  LKG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNGL--VAGGKLKASPLKGMVAAVSVGIVKGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G ++EVQG+AE   FS D   ++L LA+  I D+++ QK  +++
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLSLLALARQGIEDIVRAQKAALAD 238


>gi|307133086|ref|YP_003885102.1| ribonuclease PH [Dickeya dadantii 3937]
 gi|306530615|gb|ADN00546.1| ribonuclease PH [Dickeya dadantii 3937]
          Length = 238

 Score =  349 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 123/240 (51%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++LTR  +K+AEGS LV+FGDT +L  AT+E+ VP +++    GWIT
Sbjct: 1   MRPTGRSAQQIRPLTLTRHYTKHAEGSVLVEFGDTKVLCNATVEDGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL+ LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLNKLGEYTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  M         +  LKG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNGMVASGKL--KTSPLKGMVAAVSVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G ++EVQG+AE   FS D   ++L LA+  I D+++ QK  +++
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLSLLALARQGIEDIVRAQKAALAD 238


>gi|50083344|ref|YP_044854.1| ribonuclease PH [Acinetobacter sp. ADP1]
 gi|49529320|emb|CAG67032.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter sp. ADP1]
          Length = 251

 Score =  349 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 121/239 (50%), Positives = 160/239 (66%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MRL  R  +Q+R++ +TR  ++YAEGS LV+FG T +L TA+++  VP +++    GW+T
Sbjct: 14  MRLDQRALDQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR++VDL  LG   I IDCDVIQ
Sbjct: 74  AEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D +  + +   K      LKG VAAIS G+     ++DL Y 
Sbjct: 134 ADGGTRTAAITGAAVALIDAMNVLLE--KKKIKQDPLKGLVAAISVGIYQDEVLLDLCYE 191

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N VMT +G  +E+QG+AE   F++    AML +A+  I +LIK Q+  + 
Sbjct: 192 EDSNCQTDLNVVMTQAGEFIEIQGTAEEKPFTRTQANAMLEVAEKGIQELIKKQQQALG 250


>gi|289209634|ref|YP_003461700.1| ribonuclease PH [Thioalkalivibrio sp. K90mix]
 gi|288945265|gb|ADC72964.1| ribonuclease PH [Thioalkalivibrio sp. K90mix]
          Length = 242

 Score =  349 bits (896), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 123/240 (51%), Positives = 170/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ ++MR +  TR  +++AEGS LV+FGDT +L  AT+E +VP W++N   GW+T
Sbjct: 1   MRPSGRQADEMRPVRFTRHFTRHAEGSVLVEFGDTRVLCNATIESRVPPWLKNKGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST +R+ REA  G+ GGR+ EIQR+IGR+LR+VVDL ALG RQII+DCDVIQ
Sbjct: 61  AEYSMLPRSTHDRMAREAARGKLGGRTMEIQRLIGRSLRAVVDLEALGERQIIVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA+VAL D ++   +          L GH+AAIS G+  G P++DLDY 
Sbjct: 121 ADGGTRTASISGAYVALRDAIRKARE--QGMIRKDPLHGHLAAISVGIFNGAPVLDLDYD 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM ++G ++E+QG+AE   F +D    ML+L +  I  +++ Q+  ++ 
Sbjct: 179 EDSQAETDLNLVMNEAGGVIEIQGTAEGHAFRRDELNQMLDLGEKGIQQIVEAQRAALAK 238


>gi|115350911|ref|YP_772750.1| ribonuclease PH [Burkholderia ambifaria AMMD]
 gi|122323780|sp|Q0BHF7|RNPH_BURCM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|115280899|gb|ABI86416.1| RNAse PH [Burkholderia ambifaria AMMD]
          Length = 246

 Score =  349 bits (896), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 130/238 (54%), Positives = 171/238 (71%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ +++R+++LTR  +K+AEGS LV+FGDT ++ TA++ E+VP ++R+   GW+TA
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +            +  HVAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLIAAGKL--ARSPITDHVAAISVGVYEGVPLLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMT +G  VEVQG+AE   FS+    A+L+LA+  I  L++LQKDV+ 
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQSGIGQLVQLQKDVLG 242


>gi|83595868|gb|ABC25230.1| ribonuclease PH [uncultured marine bacterium Ant4D3]
          Length = 256

 Score =  349 bits (896), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 117/239 (48%), Positives = 166/239 (69%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R+I +TR  +K+AEGS L++FGDT +L TAT+E  VP ++R +  GW+TA
Sbjct: 18  RPSGRATDQLRDIKITRGFTKHAEGSVLIEFGDTRVLCTATVERGVPRFLRGSGSGWVTA 77

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T +R  REA  G+QGGR+ EIQR+IGR+LR+ ++L  LG   I +DCDV+QA
Sbjct: 78  EYGMLPRATHSRNGREAARGKQGGRTLEIQRLIGRSLRASLNLEKLGENTITLDCDVLQA 137

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA++A+ D +  ++   N       L+  +AAIS G+    P++DLDY E
Sbjct: 138 DGGTRTASITGAYIAMVDAINVLKKDKNGAMRGDPLRRQIAAISVGIYKDEPVLDLDYDE 197

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT  G  +EVQG+AE + ++QD   AML LA+  I ++  LQ   +++
Sbjct: 198 DSKAETDMNVVMTADGGFIEVQGTAEGSPYTQDQMMAMLALARKGITEIAALQTAALAD 256


>gi|330964252|gb|EGH64512.1| ribonuclease PH [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 240

 Score =  349 bits (896), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 167/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L+ ++      +    LK  +AA+S GM  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALADALKVLKKRG-GLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  +   AML LA+  + +L +LQ+  +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQRAALAD 240


>gi|187929359|ref|YP_001899846.1| ribonuclease PH [Ralstonia pickettii 12J]
 gi|309781786|ref|ZP_07676519.1| tRNA nucleotidyltransferase [Ralstonia sp. 5_7_47FAA]
 gi|226736927|sp|B2U8D8|RNPH_RALPJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|187726249|gb|ACD27414.1| ribonuclease PH [Ralstonia pickettii 12J]
 gi|308919427|gb|EFP65091.1| tRNA nucleotidyltransferase [Ralstonia sp. 5_7_47FAA]
          Length = 238

 Score =  349 bits (896), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 127/239 (53%), Positives = 164/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ +Q+R ++LTR+ +++AEGS LV FGDT +L TA++  KVP   + +  GW+T
Sbjct: 1   MRPSGRQPDQLRPVTLTRKFTRHAEGSVLVCFGDTQVLCTASVLPKVPPHKKGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGRA+R+V DL ALG   + +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRTVFDLRALGEHTLHLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA +D +  M +          ++  VAA+S G++ G P++DLDY 
Sbjct: 121 ADGGTRTASITGAFVAAYDAVSVMREKGQLV--GDPVRDFVAAVSVGVVDGVPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT SG  VEVQG+AE   FS+    AML LA   I  LI LQK  + 
Sbjct: 179 EDSACDTDMNVVMTGSGGFVEVQGTAEGTPFSRAEMDAMLGLADQGIRTLISLQKQALG 237


>gi|188996466|ref|YP_001930717.1| ribonuclease PH [Sulfurihydrogenibium sp. YO3AOP1]
 gi|226736945|sp|B2V890|RNPH_SULSY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|188931533|gb|ACD66163.1| ribonuclease PH [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 257

 Score =  349 bits (896), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 115/240 (47%), Positives = 154/240 (64%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+  Q+R I + R  + YAEGS L++FG+T ++ TA++E+KVP +++ T  GWIT
Sbjct: 1   MRPDGRKPAQLRPIKIIRDFNIYAEGSVLIEFGNTKVIVTASVEDKVPPFLKGTGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR++  R  RE V G   GR+ EIQR+IGR+LR+ VDL  LG + I IDCDVIQ
Sbjct: 61  AEYSMIPRASETRSLREVVRGSPSGRTHEIQRLIGRSLRAAVDLKKLGEKTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITGA++A+ D    +         +  LK +VAAIS G +    ++DL+Y 
Sbjct: 121 ADGGTRVASITGAFIAVADACIKL--TKQNLVKANPLKDYVAAISVGKVRNEIVLDLNYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VMT  G  VE+  + E  TFSQ+ F  ML   K  I  LIK+QK+ I  
Sbjct: 179 EDSNAQVDMNLVMTGKGEFVEIGATGEENTFSQEDFNKMLEYGKSGIERLIKIQKEFIEG 238


>gi|299772068|ref|YP_003734094.1| ribonuclease PH [Acinetobacter sp. DR1]
 gi|298702156|gb|ADI92721.1| ribonuclease PH [Acinetobacter sp. DR1]
          Length = 238

 Score =  349 bits (896), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R  +Q+RE+ +TR  ++YAEGS LV+FG T +L TA+++  VP +++    GW+T
Sbjct: 1   MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+Q GR+QEIQR+IGR+LR++VDL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRCDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +   S K      LKG VAAIS GM     ++DL Y 
Sbjct: 121 ADGGTRTASITGAAVALVDAMNVL--LSQKKIKHDPLKGLVAAISVGMYQDEVLLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N VMT +G  +E+QG+AE   F++     ML +A+  IA+LIK Q++ + 
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNDMLEMAEKGIAELIKKQQEALG 237


>gi|255320662|ref|ZP_05361839.1| ribonuclease PH [Acinetobacter radioresistens SK82]
 gi|262380705|ref|ZP_06073858.1| ribonuclease PH [Acinetobacter radioresistens SH164]
 gi|255302278|gb|EET81518.1| ribonuclease PH [Acinetobacter radioresistens SK82]
 gi|262297653|gb|EEY85569.1| ribonuclease PH [Acinetobacter radioresistens SH164]
          Length = 238

 Score =  349 bits (896), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 123/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R  NQ+R++ +TR  ++YAEGS LV+FG T +L TA+++  VP +++    GW+T
Sbjct: 1   MRIDQRALNQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR++VDL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D +  + +   K      LKG VAAIS GM     ++DL Y 
Sbjct: 121 ADGGTRTAAITGAAVALVDAMNVLLE--RKKIKHDPLKGLVAAISVGMYQDEVLLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N VMT +G  +E+QG+AE   F++    AML LA+  I++LIK Q++ + 
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQCNAMLELAEQGISELIKKQQEALG 237


>gi|298293788|ref|YP_003695727.1| ribonuclease PH [Starkeya novella DSM 506]
 gi|296930299|gb|ADH91108.1| ribonuclease PH [Starkeya novella DSM 506]
          Length = 237

 Score =  349 bits (896), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 135/239 (56%), Positives = 178/239 (74%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S RQ ++MR +S  R V ++AEGSCLVKFG+TH+L  ATLEE++P W++    GW+T
Sbjct: 1   MRPSRRQPDEMRAVSFERGVLRHAEGSCLVKFGETHVLVAATLEERLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +RE  +G+  GR+ EIQR+IGR+LR+VVDL  LG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATHERTRREVTAGKPSGRTHEIQRLIGRSLRTVVDLEKLGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAW+ALHDCL  M+  +     +  L+ H+AA+SCG++ G P +DLDY 
Sbjct: 121 ADGGTRTASITGAWIALHDCLSWMK--TRGMLATIPLRDHIAAVSCGIVDGEPRLDLDYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS+   D NFVMT +G  VE+QG+AE+  F++D F AML LA+  +A L+ LQK  +S
Sbjct: 179 EDSSAHTDVNFVMTGTGGFVEIQGTAEKTPFTEDEFGAMLGLARKGVAKLVDLQKLAVS 237


>gi|271498722|ref|YP_003331747.1| ribonuclease PH [Dickeya dadantii Ech586]
 gi|270342277|gb|ACZ75042.1| ribonuclease PH [Dickeya dadantii Ech586]
          Length = 238

 Score =  349 bits (896), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 123/240 (51%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++ TR  +K+AEGS LV+FGDT +L  AT+EE VP +++    GWIT
Sbjct: 1   MRPTGRSAQQIRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL+ LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLNKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  M         +  LKG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNGMVASGKL--KASPLKGMVAAVSVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G ++EVQG+AE   FS D   ++L LA+  I D+++ QK  +++
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLSLLALARQGIEDIVRAQKATLAD 238


>gi|253995547|ref|YP_003047611.1| ribonuclease PH [Methylotenera mobilis JLW8]
 gi|253982226|gb|ACT47084.1| ribonuclease PH [Methylotenera mobilis JLW8]
          Length = 241

 Score =  349 bits (896), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 131/239 (54%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R S R  NQ+RE+ + R  +K+AEGS LVKFGDTH+L TA+++EKVP +++    GW+T
Sbjct: 5   IRPSQRACNQLREVEIIRHYTKHAEGSVLVKFGDTHVLCTASVDEKVPGFLKGKGQGWVT 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R+ REA  G+Q GR+QEIQR+IGR+LR+++DL  LG R I IDCDVIQ
Sbjct: 65  AEYGMLPRSTGSRMDREAARGKQSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDCDVIQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VALHD +  +            LK  VAAIS G+  G P++DLDY 
Sbjct: 125 ADGGTRTASITGAYVALHDAISFLLKSGKI--SESPLKDSVAAISVGVYQGTPVLDLDYI 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT  G  VE+QG+AE   F++D   AML+LA   I  LI  Q   + 
Sbjct: 183 EDSDCDTDMNVVMTGKGGFVEIQGTAEGEPFARDAMNAMLDLAAHGIQQLIIEQNKALG 241


>gi|332968500|gb|EGK07563.1| tRNA nucleotidyltransferase [Psychrobacter sp. 1501(2011)]
          Length = 238

 Score =  349 bits (896), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R+ +Q+R ++  R  +K+AEGS LV FGDT +L TA++E  VP W++    GW+T
Sbjct: 1   MRIDNRELDQLRTVTFERNYTKHAEGSVLVCFGDTKVLCTASVESGVPRWLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA  G+Q GR+QEIQR+IGR+LR++VDL+ LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMVDLNKLGENTIYLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +AL D L+ ++    K   +  L G VAA+S G+  G  ++DL+Y 
Sbjct: 121 ADGGTRTASITGAAIALIDALESLQQ--KKKLKADPLVGLVAAVSVGVKNGEILLDLNYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS+ D D N VMT  G  +E+QG+AE   F++     ML +A+  IADLIKLQ+  + 
Sbjct: 179 EDSSCDTDLNVVMTQKGEFIEIQGTAEEKPFTRAEADKMLAMAEKGIADLIKLQQTALG 237


>gi|119472968|ref|ZP_01614824.1| RNase PH (tRNA nucleotidyltransferase) [Alteromonadales bacterium
           TW-7]
 gi|119444637|gb|EAW25947.1| RNase PH (tRNA nucleotidyltransferase) [Alteromonadales bacterium
           TW-7]
          Length = 237

 Score =  349 bits (896), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 127/239 (53%), Positives = 161/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  NQ+R +S TR  + +AEGS LV+FG+T +L TAT+E  VP +++    GWI 
Sbjct: 1   MRPSQRTPNQIRPVSFTRNYTLHAEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWIN 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHTRNAREASRGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L HM   +     S  LK  +AAIS G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASISGACVALVDALTHMR--AKGMINSNPLKHMIAAISVGIYKGQAISDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N ++T++G I+EVQG+AE   FS D    +L LAK  I ++I +QK  ++
Sbjct: 179 EDSAAETDMNVILTETGKIIEVQGTAEGEPFSFDELDELLTLAKHSIREIIDVQKQALA 237


>gi|161611344|ref|YP_272506.2| ribonuclease PH [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320322255|gb|EFW78351.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331904|gb|EFW87842.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330873180|gb|EGH07329.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 240

 Score =  349 bits (895), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 165/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  +       +    LK  +AA+S GM  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALADAL-KVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYPE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  +   AML LA+  + +L +LQ+  +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQRAALAD 240


>gi|71909462|ref|YP_287049.1| ribonuclease PH [Dechloromonas aromatica RCB]
 gi|123626372|sp|Q479A2|RNPH_DECAR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|71849083|gb|AAZ48579.1| RNAse PH [Dechloromonas aromatica RCB]
          Length = 238

 Score =  349 bits (895), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 121/239 (50%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S RQ +Q+R + +TR  +++AEGS L++ GDT +L TA++EE VP ++R    GW+T
Sbjct: 1   MRPSQRQPDQLRTVRITRNFTRHAEGSVLIEMGDTRVLCTASVEENVPPFLRGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALRSV+DL ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATHTRSSREAAKGKQTGRTQEIQRLIGRALRSVIDLKALGERQITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITGAWVAL++    +         +  ++ HVAAIS G+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGAWVALYEACDKLVQAGKL--PANPVRDHVAAISVGIYKGAPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT +G IVE+QG+AE   F+++    +++LA   +  L+  Q+  ++
Sbjct: 179 EDSDCDTDMNVVMTGAGGIVEIQGTAEGEPFTREQMSVLVDLATLGVRHLVAAQQSALA 237


>gi|293611262|ref|ZP_06693560.1| ribonuclease PH [Acinetobacter sp. SH024]
 gi|292826513|gb|EFF84880.1| ribonuclease PH [Acinetobacter sp. SH024]
 gi|325124022|gb|ADY83545.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 238

 Score =  349 bits (895), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 123/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R  +Q+RE+ +TR  ++YAEGS LV+FG T +L TA+++  VP +++    GW+T
Sbjct: 1   MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+Q GR+QEIQR+IGR+LR++VDL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRCDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +   S K      LKG VAAIS GM     ++DL Y 
Sbjct: 121 ADGGTRTASITGAAVALVDAMNVL--LSQKKIKHDPLKGLVAAISVGMYQDEVLLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N VMT +G  +E+QG+AE   F++    AML +A+  IA+LIK Q++ + 
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELIKKQQEALG 237


>gi|225848159|ref|YP_002728322.1| ribonuclease PH [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644653|gb|ACN99703.1| ribonuclease PH [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 257

 Score =  349 bits (895), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 115/240 (47%), Positives = 154/240 (64%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R+  Q+R I +TR  + YAEGS L++FG+T ++ TA++E+KVP +++ +  GWIT
Sbjct: 1   MRPDNRKPAQLRPIKITRDFNIYAEGSVLIEFGNTKVIVTASIEDKVPPFLKGSGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR++  R  RE V G   GR+ EIQR+IGR+LR+ VDL  LG R I IDCDVIQ
Sbjct: 61  AEYSMIPRASETRSLREVVRGSPSGRTHEIQRLIGRSLRAAVDLKKLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITGA++A+ D L  +E   N    S  LK +VAAIS G +    ++DL+Y 
Sbjct: 121 ADGGTRVASITGAFIAVADALIKLEK--NNLVKSNPLKDYVAAISVGKVNNEIVLDLNYQ 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VMT  G  VE+  + E  TF+      M+   K  I  LIK+QK+ I  
Sbjct: 179 EDSKAQVDMNIVMTGKGEFVELGATGEENTFTYQELQKMIEYGKSGIERLIKIQKEFIEG 238


>gi|226952284|ref|ZP_03822748.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter sp. ATCC 27244]
 gi|294648770|ref|ZP_06726228.1| tRNA nucleotidyltransferase [Acinetobacter haemolyticus ATCC 19194]
 gi|226836950|gb|EEH69333.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter sp. ATCC 27244]
 gi|292825340|gb|EFF84085.1| tRNA nucleotidyltransferase [Acinetobacter haemolyticus ATCC 19194]
          Length = 238

 Score =  349 bits (895), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 124/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R  +Q+RE+ +TR  ++YAEGS LV+FG T +L TA+++  VP +++    GW+T
Sbjct: 1   MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR++VDL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D +  +   SNK      LKG +AAIS GM     ++DL Y 
Sbjct: 121 ADGGTRTAAITGAAVALVDAMNVL--LSNKKIKQDPLKGLIAAISVGMYQDEVLLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N VMT +G  +E+QG+AE   F++    AML LA+  IA+LI+ Q+  + 
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRQQCNAMLELAEKGIAELIQKQQQALG 237


>gi|223041894|ref|ZP_03612080.1| ribonuclease PH [Actinobacillus minor 202]
 gi|240948855|ref|ZP_04753211.1| ribonuclease PH [Actinobacillus minor NM305]
 gi|223017310|gb|EEF15735.1| ribonuclease PH [Actinobacillus minor 202]
 gi|240296670|gb|EER47281.1| ribonuclease PH [Actinobacillus minor NM305]
          Length = 238

 Score =  349 bits (895), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ+R + +TR  +KYAEGS L++FG+T +L  AT+EE VP +++  + GW+T
Sbjct: 1   MRPNNRELNQVRPVKITRHYTKYAEGSVLIEFGETKVLCNATVEETVPRFLKGQQQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I IDCDVIQ
Sbjct: 61  AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAIVDLKALGERTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VALHD +  +   ++    +  LKG VAAIS G++    + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALHDAINKL--MADGVLKTNPLKGLVAAISVGIVNNNAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM D G +VEVQG+AE   F+      +L+LA   I  LI+ Q+  ++ 
Sbjct: 179 EDSNAETDMNVVMVDDGRLVEVQGTAEGEPFTHMELLQLLDLAHQGIEQLIEAQRKALAE 238


>gi|319795588|ref|YP_004157228.1| ribonuclease ph [Variovorax paradoxus EPS]
 gi|315598051|gb|ADU39117.1| ribonuclease PH [Variovorax paradoxus EPS]
          Length = 243

 Score =  349 bits (895), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 121/237 (51%), Positives = 168/237 (70%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R + +TR  + +AEGS L++FG T +L TA++EE+VP   + +  GW+TA
Sbjct: 6   RSGGRAADQLRPVRITRGFTIHAEGSVLIEFGQTRVLCTASVEERVPPHKKGSGEGWVTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR++R+V DL+ALG R I +DCDV+QA
Sbjct: 66  EYGMLPRATHTRSSREAAKGKQTGRTQEIQRLIGRSMRAVFDLAALGERTIHLDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VA  D +  +   +     +  +KGHVAAIS G++ G P++DL+Y E
Sbjct: 126 DGGTRTAAITGAFVAAQDAVNKL--LAAGTLKASPIKGHVAAISVGIVGGTPLLDLEYTE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS+ D D N VMT +GH VEVQG+AE   F+++    +L LA+  I +L+ LQK  +
Sbjct: 184 DSSCDTDMNVVMTGAGHFVEVQGTAEGVAFTREEMNLLLGLAEKGIGELVTLQKQAL 240


>gi|163750741|ref|ZP_02157977.1| ribonuclease PH [Shewanella benthica KT99]
 gi|161329585|gb|EDQ00577.1| ribonuclease PH [Shewanella benthica KT99]
          Length = 237

 Score =  349 bits (895), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q R +++TR+ + +AEGS LV+FG+T +L TA+ E  VP +++    GW+T
Sbjct: 1   MRPSDRTPAQSRPVTITRQFTAHAEGSVLVEFGETKVLCTASFEVGVPRFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGR+LR+ VD+ ALG   IIIDCDVIQ
Sbjct: 61  AEYGMLPRSTHTRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D L            +  LK  +AA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G ++E+QG+AE   FS +   +ML LAK  I +++ +QK  ++
Sbjct: 179 EDSEAETDMNVVMTETGQMIEIQGTAEGEPFSHEELLSMLELAKHGIREIVDVQKAALN 237


>gi|254482749|ref|ZP_05095987.1| ribonuclease PH [marine gamma proteobacterium HTCC2148]
 gi|214037108|gb|EEB77777.1| ribonuclease PH [marine gamma proteobacterium HTCC2148]
          Length = 240

 Score =  349 bits (895), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 127/239 (53%), Positives = 169/239 (70%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR   Q+R+IS+TR  + +AEGS LV FG T ++ TA++EE VP ++R    GW+TA
Sbjct: 3   RPSGRTPEQLRDISITRNFTCHAEGSVLVSFGKTKVICTASVEEGVPRFLRGKGSGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG+R+ REA  G+QGGR+ EIQR+IGR+LR+ VDL  LG   I IDCDVIQA
Sbjct: 63  EYGMLPRSTGSRMGREASRGKQGGRTVEIQRLIGRSLRAAVDLKKLGENTINIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D + +++    K   +  L   +A++S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGALVALVDAINYLQR--KKIINTDPLLEMMASVSVGIYQGVPVLDLDYPE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  D D N +M +SG  +EVQG+AE ATF++D   AML+LA   I +LI+ QK  ++ 
Sbjct: 181 DSAADTDMNVIMGESGGFIEVQGTAEGATFARDELNAMLDLASAGILELIEKQKAALAE 239


>gi|328541647|ref|YP_004301756.1| ribonuclease PH [polymorphum gilvum SL003B-26A1]
 gi|326411399|gb|ADZ68462.1| Ribonuclease PH [Polymorphum gilvum SL003B-26A1]
          Length = 237

 Score =  349 bits (895), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 146/235 (62%), Positives = 183/235 (77%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R ++L R VSK+AEGSCLVKFGDTH+L TA+LEE+VP W+R  + GW+T
Sbjct: 1   MRPSKRDADELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRGQQRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R++REA  G+Q GR+QEIQR+IGR+LR+VVDL ALG  QI +DCDVIQ
Sbjct: 61  AEYGMLPRATGERMRREASVGKQSGRTQEIQRLIGRSLRAVVDLEALGEYQISVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DC++ M   +       VLK HVAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALRDCIEWMR--ARDMVTKPVLKDHVAAISCGIYKGTPVLDLDYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  + DANFV+T +G IVE+QG+AE A F++D F A+L LAK  I  L+ LQK
Sbjct: 179 EDSAAETDANFVLTGTGGIVEIQGTAEGAPFTEDEFAALLGLAKKGIGRLVDLQK 233


>gi|254428098|ref|ZP_05041805.1| ribonuclease PH [Alcanivorax sp. DG881]
 gi|196194267|gb|EDX89226.1| ribonuclease PH [Alcanivorax sp. DG881]
          Length = 238

 Score =  349 bits (895), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 124/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+RE+S TR  + +AEGS LV FG T +L TA++EE VP +++    GW+T
Sbjct: 1   MRPSGRAPDQLRELSFTRNYTVHAEGSVLVAFGGTKVLCTASVEEGVPRFLKGKGQGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST  R  REA  G+QGGR+ EIQR+IGR+LR+ VD+ ALG R I +DCDV+Q
Sbjct: 61  AEYSMLPRSTHTRSGREATRGKQGGRTLEIQRLIGRSLRAAVDMKALGERTIYLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D   H+ +   K   S  L G V A+S GM  G P++DLDY 
Sbjct: 121 ADGGTRTASISGACVALVDAFTHLLE--TKKIKSDPLTGLVGAVSVGMYEGAPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N VMT  G  +E+QGSAE A F+++   ++L LA+  I ++IK Q+  + 
Sbjct: 179 EDSNAGTDMNVVMTQQGGFIEIQGSAEGAPFTREQSDSLLGLAEKGIGEIIKAQQVALG 237


>gi|302551723|ref|ZP_07304065.1| ribonuclease PH [Streptomyces viridochromogenes DSM 40736]
 gi|302469341|gb|EFL32434.1| ribonuclease PH [Streptomyces viridochromogenes DSM 40736]
          Length = 245

 Score =  349 bits (895), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 117/237 (49%), Positives = 155/237 (65%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R I++ R  SK+AEGS LV FGDT +  TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPQQLRPITIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  RE+V GR GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRSTNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         Q L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQRKKLIKAGRQPLTGTVSAVSVGIVGGVPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   D D N V T  G  VEVQG+AE   F++D   A+L+LA    ++L   Q+  +
Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVAGCSELAAHQRTAL 239


>gi|257092562|ref|YP_003166203.1| ribonuclease PH [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045086|gb|ACV34274.1| ribonuclease PH [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 238

 Score =  349 bits (895), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 130/240 (54%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S RQ +Q+R++ +TR+ + +AEGS L++ GDT +L TA++EE VP + R T  GW+T
Sbjct: 1   MRPSQRQPSQLRQVRITRQFTSHAEGSVLIEIGDTRVLCTASVEEFVPPFRRGTGAGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R +REA  G+Q GR+QEIQR+IGRALR+V DL ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRTQREAAKGKQTGRTQEIQRLIGRALRAVTDLKALGERQITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR AAITGAW+AL+D   H+            L  HVAAIS G+  G P++DLDY 
Sbjct: 121 ADGGTRCAAITGAWLALNDACAHLLAQGRLVV--NPLSDHVAAISVGIYQGSPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS+ D D N VMT SG IVE+QG+AE   F++     +L+LA   I  LI  QK  ++ 
Sbjct: 179 EDSSCDTDMNVVMTGSGGIVEIQGTAEGVPFTRGQMNQLLDLADAGIGQLIARQKAALAQ 238


>gi|325579215|ref|ZP_08149171.1| tRNA nucleotidyltransferase [Haemophilus parainfluenzae ATCC 33392]
 gi|325159450|gb|EGC71584.1| tRNA nucleotidyltransferase [Haemophilus parainfluenzae ATCC 33392]
          Length = 238

 Score =  349 bits (895), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q R I +TR  +K+AEGS LV+FGDT +L TA+++E VP +++    GW+T
Sbjct: 1   MRPNNRENHQPRPIKITRNYTKHAEGSVLVEFGDTKVLCTASVDESVPRFLKGQNQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +   +N    +  +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALCDAINGL--IANGTLKTNPIKGLVAAISVGIVEGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G ++EVQG+AE   FS +    +L LAK     +   Q++ + 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLGLAKQGCEQIFAAQREALG 237


>gi|186475433|ref|YP_001856903.1| ribonuclease PH [Burkholderia phymatum STM815]
 gi|226736895|sp|B2JEI0|RNPH_BURP8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|184191892|gb|ACC69857.1| ribonuclease PH [Burkholderia phymatum STM815]
          Length = 246

 Score =  348 bits (894), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 125/240 (52%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R++ +TR  +K+AEGS LV+FGDT ++ TA++ E VP ++R+   GW+TA
Sbjct: 7   RPSGRTADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAESVPAFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALRSV DL  LG+R + IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLERLGARTLHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA  D +  +   +     +  +  +VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAARDAVAKL--LATGRIETSPITDYVAAISVGVFDGIPVLDLDYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  D D N VMT  G  VE+QG+AE   FS+D    +L+LA+  IA LI  QK+ + ++
Sbjct: 185 DSQCDTDMNVVMTGDGGFVEIQGTAEGVPFSRDEMNKLLDLAQAGIATLIAKQKEALESK 244


>gi|164686704|ref|ZP_02210732.1| hypothetical protein CLOBAR_00299 [Clostridium bartlettii DSM
           16795]
 gi|164604094|gb|EDQ97559.1| hypothetical protein CLOBAR_00299 [Clostridium bartlettii DSM
           16795]
          Length = 449

 Score =  348 bits (894), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 117/239 (48%), Positives = 159/239 (66%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ +TR  +KYAEGS  ++ GDT +L  A++E+KVP ++RNT  GWI A
Sbjct: 3   RIDGREFDQIRDLKITRNYTKYAEGSVFIEMGDTKVLCNASIEDKVPPFLRNTGTGWINA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  R+A  G+  GRSQEIQR+IGRA+RSVVDL  LG R I IDCDVIQA
Sbjct: 63  EYSMLPRSTQQRKIRDASRGKIDGRSQEIQRLIGRAIRSVVDLDKLGERTIWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA+ D +  +     K      ++  V+AIS G++ G  ++DL Y E
Sbjct: 123 DGGTRTASITGAFVAVLDAINKLHK--EKAIKHMPVRNFVSAISVGIVNGEYLLDLCYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS   VD N +MTD G  VE+QG+ E   FS+     +L L +     L+K Q++ +  
Sbjct: 181 DSNAQVDMNIIMTDKGEFVELQGTGEECPFSRKDLEKLLELGEKGNKMLLKAQREALGE 239


>gi|329901883|ref|ZP_08272970.1| Ribonuclease PH [Oxalobacteraceae bacterium IMCC9480]
 gi|327548975|gb|EGF33592.1| Ribonuclease PH [Oxalobacteraceae bacterium IMCC9480]
          Length = 244

 Score =  348 bits (894), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 128/239 (53%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R SGR  + +R + LTR  +K+AEGS L++FGDT ++ TA++E+KVP +++    GW+T
Sbjct: 5   LRPSGRTADALRPVRLTRHYTKHAEGSVLIEFGDTKVICTASIEDKVPGFLKGKGQGWMT 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGR+LR+  DLSA G R + +DCDVIQ
Sbjct: 65  AEYGMLPRSTHTRMAREAAKGKQSGRTQEIQRLIGRSLRAAFDLSAFGERTLHLDCDVIQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VA HD    + D       +  LK  VAAIS G+  G P++DLDY 
Sbjct: 125 ADGGTRTASITGAMVAAHDAFSKLVDTG--VLSAMPLKHFVAAISVGVFQGTPVLDLDYD 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST D D N VMTD+GH +EVQG+AE A F +     +L+LA   I DLI LQ+  + 
Sbjct: 183 EDSTCDTDMNVVMTDAGHFIEVQGTAEGAAFDRATMNQLLDLADGGIRDLIALQRRELG 241


>gi|251798434|ref|YP_003013165.1| ribonuclease PH [Paenibacillus sp. JDR-2]
 gi|247546060|gb|ACT03079.1| ribonuclease PH [Paenibacillus sp. JDR-2]
          Length = 245

 Score =  348 bits (894), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 112/240 (46%), Positives = 163/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GRQ NQ+R +++T  V+KYAEGS L++ G+T ++ TA++EE+VP +++    GWIT
Sbjct: 1   MRTDGRQPNQLRPVTITTGVNKYAEGSVLIEVGETKVICTASVEERVPPFMKGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  RE+  G+  GR+ EIQR+IGRALRS+VDL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATHSRNHRESAKGKLSGRTMEIQRLIGRALRSIVDLQALGERTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITGA+VAL   +  +   +   +    +   +A++S G++    ++DL+Y 
Sbjct: 121 ADGGTRTTSITGAFVALCLAVNKLSKTTQFPKY--PITAFLASVSVGVIQERELLDLNYD 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VMT  G  VE+QG+ E + FS++    +L LA+  I +LI+ Q++ +  
Sbjct: 179 EDSKAKVDMNVVMTGEGKFVELQGTGEDSPFSREELNKLLELAEGGIEELIEKQREALGE 238


>gi|328882703|emb|CCA55942.1| Ribonuclease PH [Streptomyces venezuelae ATCC 10712]
          Length = 243

 Score =  348 bits (894), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 111/241 (46%), Positives = 154/241 (63%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS L+ FGDT +  TA++ E VP W + +  GW+T 
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTG 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L G V A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQTKKLVKAGRKPLTGTVGAVSVGIVDGVPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D   D D N V T  G  VEVQG+AE   F +    A+L+LA    A+L ++Q+  +   
Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLASGGCAELAEIQRKALEGT 242

Query: 242 V 242
           +
Sbjct: 243 L 243


>gi|27364280|ref|NP_759808.1| ribonuclease PH [Vibrio vulnificus CMCP6]
 gi|37678463|ref|NP_933072.1| ribonuclease PH [Vibrio vulnificus YJ016]
 gi|320157673|ref|YP_004190052.1| ribonuclease PH [Vibrio vulnificus MO6-24/O]
 gi|33301654|sp|Q8DDX4|RNPH_VIBVU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61216003|sp|Q7MPT3|RNPH_VIBVY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|27360398|gb|AAO09335.1| ribonuclease PH [Vibrio vulnificus CMCP6]
 gi|37197203|dbj|BAC93043.1| RNase PH [Vibrio vulnificus YJ016]
 gi|319932985|gb|ADV87849.1| ribonuclease PH [Vibrio vulnificus MO6-24/O]
          Length = 238

 Score =  348 bits (894), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLEAMGEFMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ D       +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKL--KANPMKGHVAAVSVGILGEDVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +   A+L  AK  I++++  QK  ++N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLALLESAKKGISEIVAAQKAALAN 238


>gi|239941573|ref|ZP_04693510.1| ribonuclease PH [Streptomyces roseosporus NRRL 15998]
 gi|239988038|ref|ZP_04708702.1| ribonuclease PH [Streptomyces roseosporus NRRL 11379]
 gi|291445016|ref|ZP_06584406.1| ribonuclease PH [Streptomyces roseosporus NRRL 15998]
 gi|291347963|gb|EFE74867.1| ribonuclease PH [Streptomyces roseosporus NRRL 15998]
          Length = 245

 Score =  348 bits (894), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 116/239 (48%), Positives = 155/239 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS L+ FGDT +  TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  REAV G+ GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L   VAAIS G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVTWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   + D N V T  G  VEVQG+AE A F +    ++L+LA     DL  LQ+D ++ 
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRKELGSLLDLATAGCVDLAALQRDALAT 241


>gi|262377117|ref|ZP_06070342.1| ribonuclease PH [Acinetobacter lwoffii SH145]
 gi|262307855|gb|EEY88993.1| ribonuclease PH [Acinetobacter lwoffii SH145]
          Length = 238

 Score =  348 bits (894), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 161/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R  +Q+RE+ +TR  ++YAEGS LV+FG T +L TA+++  VP +++    GW+T
Sbjct: 1   MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASVDSSVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LRS+VDL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRSMVDLKKLGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D +  + +   K      LKG VAA+S G+     ++DL Y 
Sbjct: 121 ADGGTRTAAITGAAVALVDAMNVLLE--RKKIKHDPLKGLVAAVSVGIFKDEVLLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N VMT +G  +E+QG+AE   F++    AML +A+  I +L+K Q++ + 
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIQELVKKQQEALG 237


>gi|239994379|ref|ZP_04714903.1| RNase PH (tRNA nucleotidyltransferase) [Alteromonas macleodii ATCC
           27126]
          Length = 237

 Score =  348 bits (894), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 162/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R +++TR+ + +AEGS LV+FG+T +L  AT+EE VP +++    GWIT
Sbjct: 1   MRPSGRTASQIRPVTITRQYTCHAEGSVLVEFGNTKVLCNATVEEGVPRFMKGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYSMLPRATHTRSGREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L +M   +     +  LK  +AA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALTYMR--AKGIIKTNPLKHMIAALSVGIYEGTPIADLEYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G ++EVQG+AE   FS +    ML + K  + +L  +QK  ++
Sbjct: 179 EDSEAETDMNIVMTETGKLIEVQGTAEGEPFSFEELDEMLKIGKHGLRELFDIQKAALA 237


>gi|213970694|ref|ZP_03398819.1| ribonuclease ph rph [Pseudomonas syringae pv. tomato T1]
 gi|213924528|gb|EEB58098.1| ribonuclease ph rph [Pseudomonas syringae pv. tomato T1]
          Length = 262

 Score =  348 bits (894), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 164/239 (68%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 25  RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 84

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 85  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 144

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  +       +    LK  +AA S GM  G P++DLDY E
Sbjct: 145 DGGTRTASITGAMVALADAL-KVIKKRGGLKGGDPLKQMIAAASVGMYQGEPVLDLDYLE 203

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  +   AML LA+  + +L ++Q+  +++
Sbjct: 204 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEMQRAALAD 262


>gi|113971932|ref|YP_735725.1| ribonuclease PH [Shewanella sp. MR-4]
 gi|114045862|ref|YP_736412.1| ribonuclease PH [Shewanella sp. MR-7]
 gi|117922209|ref|YP_871401.1| ribonuclease PH [Shewanella sp. ANA-3]
 gi|123131815|sp|Q0HZV0|RNPH_SHESR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123324577|sp|Q0HE49|RNPH_SHESM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228320|sp|A0L1S6|RNPH_SHESA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|113886616|gb|ABI40668.1| RNAse PH [Shewanella sp. MR-4]
 gi|113887304|gb|ABI41355.1| RNAse PH [Shewanella sp. MR-7]
 gi|117614541|gb|ABK49995.1| RNAse PH [Shewanella sp. ANA-3]
          Length = 237

 Score =  348 bits (893), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q R I++TR+ + +AEGS LV+FG+T +L TA+  E VP +++    GW+T
Sbjct: 1   MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+Q GR+QEIQR+IGRALR+ VD+ ALG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L            S  LK  +AA+S G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALNWAR--GKGIIKSNPLKFLIAAVSVGIYNGEAISDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G I+E+QG+AE   FS +    +L LAK+ I +++ +QK  ++
Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELIELLGLAKNSIREIVDVQKAALN 237


>gi|110801547|ref|YP_699516.1| ribonuclease PH [Clostridium perfringens SM101]
 gi|123145921|sp|Q0SQU1|RNPH_CLOPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|110682048|gb|ABG85418.1| tRNA nucleotidyltransferase [Clostridium perfringens SM101]
          Length = 248

 Score =  348 bits (893), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 109/241 (45%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR++ Q+R + +TR  +KYAEGS L++ GDT +L TA++EEKVP +++ +  GWIT
Sbjct: 1   MRSSGRKKEQIRPVKITRNFTKYAEGSVLIEVGDTKVLCTASIEEKVPPFLKGSGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PRST +R +R+    +  GR+ EIQR+IGRALRS VD+ ALG + I IDCDV+Q
Sbjct: 61  AEYNMIPRSTQSRKQRDINKLKIDGRTMEIQRLIGRALRSAVDMKALGEKTIWIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG++VAL D +  +     K      ++  V+A+S G++    ++DL Y 
Sbjct: 121 ADGGTRTTSITGSFVALVDAVNKLHQ--KKPFNVYPIRHFVSAVSIGIVGEEKVLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED    VD N VM + G  +E+QG+ E   FS+     +LNLA+     +I+ QK+ +  
Sbjct: 179 EDHVAKVDMNVVMIEEGEFIEIQGTGEIGPFSRKELDELLNLAEKGAKQMIQAQKNALKT 238

Query: 241 E 241
           +
Sbjct: 239 D 239


>gi|66043483|ref|YP_233324.1| ribonuclease PH [Pseudomonas syringae pv. syringae B728a]
 gi|257481756|ref|ZP_05635797.1| ribonuclease PH [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|302189241|ref|ZP_07265914.1| ribonuclease PH [Pseudomonas syringae pv. syringae 642]
 gi|75503908|sp|Q4ZZY6|RNPH_PSEU2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|63254190|gb|AAY35286.1| Ribonuclease PH [Pseudomonas syringae pv. syringae B728a]
 gi|330876506|gb|EGH10655.1| ribonuclease PH [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330890924|gb|EGH23585.1| ribonuclease PH [Pseudomonas syringae pv. mori str. 301020]
 gi|330895695|gb|EGH27987.1| ribonuclease PH [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330941124|gb|EGH44004.1| ribonuclease PH [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330957289|gb|EGH57549.1| ribonuclease PH [Pseudomonas syringae pv. maculicola str. ES4326]
 gi|330972206|gb|EGH72272.1| ribonuclease PH [Pseudomonas syringae pv. aceris str. M302273PT]
 gi|330977343|gb|EGH77296.1| ribonuclease PH [Pseudomonas syringae pv. aptata str. DSM 50252]
 gi|330986869|gb|EGH84972.1| ribonuclease PH [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331009390|gb|EGH89446.1| ribonuclease PH [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 240

 Score =  348 bits (893), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 165/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  +       +    LK  +AA+S GM  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALADAL-KVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  +   AML LA+  + +L +LQ+  +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQRAALAD 240


>gi|24375740|ref|NP_719783.1| ribonuclease PH [Shewanella oneidensis MR-1]
 gi|61216058|sp|Q8E9L4|RNPH_SHEON RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|24350681|gb|AAN57227.1|AE015858_8 ribonuclease PH [Shewanella oneidensis MR-1]
          Length = 237

 Score =  348 bits (893), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 121/239 (50%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q R I++TR+ + +AEGS LV+FG+T +L TA+  E VP +++    GW+T
Sbjct: 1   MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+Q GR+QEIQR+IGRALR+ VD+ ALG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L            S  LK  +AA+S G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALNWAR--GKGIIKSNPLKFLIAAVSVGIYNGEAISDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G I+E+QG+AE   F+ +    +L LAK+ I +++ +QK  ++
Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFTHEELIELLGLAKNSIREIVDVQKAALN 237


>gi|167036328|ref|YP_001671559.1| ribonuclease PH [Pseudomonas putida GB-1]
 gi|189043769|sp|B0KQ94|RNPH_PSEPG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166862816|gb|ABZ01224.1| ribonuclease PH [Pseudomonas putida GB-1]
          Length = 240

 Score =  348 bits (893), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++      +    LK  +AA+S GM  G  ++DLDY E
Sbjct: 123 DGGTRTASITGAMVALCDALAVIKKRG-GLKAGNPLKHMIAAVSVGMYQGEAVLDLDYPE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  + F AML LA+  + ++ +LQ+  +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMNEIFELQQAALAD 240


>gi|229524838|ref|ZP_04414243.1| ribonuclease PH [Vibrio cholerae bv. albensis VL426]
 gi|229338419|gb|EEO03436.1| ribonuclease PH [Vibrio cholerae bv. albensis VL426]
          Length = 257

 Score =  348 bits (893), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 20  MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 80  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D   H+       +    +KGHVAA+S G+L    + DL+Y 
Sbjct: 140 ADGGTRTASITGASVALADAFAHLMAKGQLKK--NPMKGHVAAVSVGILGEDVLCDLEYV 197

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK  + +
Sbjct: 198 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASLLD 257


>gi|87121112|ref|ZP_01077003.1| ribonuclease PH [Marinomonas sp. MED121]
 gi|86163604|gb|EAQ64878.1| ribonuclease PH [Marinomonas sp. MED121]
          Length = 239

 Score =  348 bits (893), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 118/238 (49%), Positives = 163/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R++ +TR  +K+AEGS L++ GDT ++ TATL   VP +++    GWIT
Sbjct: 1   MRPSGRAVDQLRDLKITRNFTKHAEGSVLIECGDTKVICTATLVPGVPRFLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +RV REA  G+Q GR+ EIQR+IGR+LR+ VDL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRVDREAARGKQTGRTVEIQRLIGRSLRAAVDLKKLGEHTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +VAL D ++ + +   K      +   +AAIS G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGGFVALADAVKKLVE--RKKIKENPIVSQIAAISVGVYKGEPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N +M D G  +E+QG+AE   FS +H   ML +A+  I ++++ Q+D +
Sbjct: 179 EDSNAETDMNVIMNDKGGFIEIQGTAEGEAFSDEHMMGMLKVARKGINEILQAQRDAL 236


>gi|152998356|ref|YP_001343191.1| ribonuclease PH [Marinomonas sp. MWYL1]
 gi|189043766|sp|A6W3H7|RNPH_MARMS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|150839280|gb|ABR73256.1| ribonuclease PH [Marinomonas sp. MWYL1]
          Length = 239

 Score =  348 bits (893), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 118/241 (48%), Positives = 167/241 (69%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +Q+R + +TR  +K+AEGS L++ GDT ++ TAT+   VP +++    GWIT
Sbjct: 1   MRPSGREADQLRPLKITRNFTKHAEGSVLIECGDTKVICTATVVSGVPRFLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+IGR+LR+ VDL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMDREAARGKQGGRTVEIQRLIGRSLRAAVDLKKLGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +VAL D ++ + +  NK      +   +AAIS G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGGFVALADAMRVLVE--NKKVKENPIVSQIAAISVGVYKGVPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N +M D G  +E+QG+AE   FS +H   ML +A+  IA++++ Q+  + +
Sbjct: 179 EDSNAETDMNVIMNDKGGFIEIQGTAEGEAFSDEHMMGMLAVARKGIAEIMEAQRAALFD 238

Query: 241 E 241
           +
Sbjct: 239 K 239


>gi|56461525|ref|YP_156806.1| RNase PH [Idiomarina loihiensis L2TR]
 gi|61215805|sp|Q5QYL5|RNPH_IDILO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|56180535|gb|AAV83257.1| RNase PH [Idiomarina loihiensis L2TR]
          Length = 237

 Score =  348 bits (893), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 121/239 (50%), Positives = 164/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q+R +++TR  +K+AEGS L++FG+T +L  A++E  VP +++    GW+T
Sbjct: 1   MRPSGRTAQQIRPVTITRNFTKHAEGSVLIEFGETKVLCNASVERGVPRFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+QGGR+ EIQR+IGR+LR+ +D+SALG   I IDCDVIQ
Sbjct: 61  AEYSMLPRATHTRSAREASRGKQGGRTLEIQRLIGRSLRTCIDMSALGEHTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  M   +        LK  VAAIS G+L G P+ DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALNWMR--AQGMVKVNPLKEMVAAISVGILDGEPVSDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT++G  +E+QG+AE   FS D   +++ +A+  I +LI +QK  ++
Sbjct: 179 EDSKADTDMNIVMTEAGKFIEIQGTAEGEAFSFDEMNSLVEMARHSIRELIDIQKQALA 237


>gi|153830706|ref|ZP_01983373.1| ribonuclease PH [Vibrio cholerae 623-39]
 gi|148873826|gb|EDL71961.1| ribonuclease PH [Vibrio cholerae 623-39]
          Length = 257

 Score =  348 bits (893), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 20  MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 80  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D   H+   +        +KGHVAA+S G+L G  + DL+Y 
Sbjct: 140 ADGGTRTASITGASVALADAFTHL--IAKGQLKKNPMKGHVAAVSVGILGGDVLCDLEYV 197

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   F  +    +L +AK  IAD++ +QK  + +
Sbjct: 198 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFCHEQLLELLAVAKKGIADIVAVQKASLLD 257


>gi|332995822|gb|AEF05877.1| ribonuclease PH [Alteromonas sp. SN2]
          Length = 237

 Score =  348 bits (893), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 121/239 (50%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  NQ+R +++TR+ + +AEGS LV+FG+T +L  AT+EE VP +++    GWIT
Sbjct: 1   MRPSGRTANQIRPVTITRQYTCHAEGSVLVEFGNTKVLCNATVEEGVPRFMKGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYSMLPRATHTRSGREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L +M   S     +  LK  +AA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALTYMR--SKGILKANPLKHMIAALSVGIYKGTPIADLEYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G ++EVQG+AE   F+ +    ML +AK  + +L  +QK  ++
Sbjct: 179 EDSVAETDMNIVMTETGKLIEVQGTAEGEPFAFEELDEMLTIAKHGLRELFDIQKAALA 237


>gi|170693638|ref|ZP_02884796.1| ribonuclease PH [Burkholderia graminis C4D1M]
 gi|170141420|gb|EDT09590.1| ribonuclease PH [Burkholderia graminis C4D1M]
          Length = 246

 Score =  348 bits (893), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 129/238 (54%), Positives = 168/238 (70%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R++ +TR  +K+AEGS LV+FGDT ++ TA++ E VP ++R+   GW+TA
Sbjct: 7   RPSGRLAHQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAETVPSFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALRSV DL  LG+R + IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +         S  +  +VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLLAAGRI--ESSPISDYVAAISVGVYDGLPVLDLDYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMT +G  VE+QG+AE   FS+D   A+L+LA D IA LI  QK+ + 
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMNALLDLASDGIATLIAKQKEALE 242


>gi|154254011|ref|YP_001414835.1| ribonuclease PH [Parvibaculum lavamentivorans DS-1]
 gi|171769691|sp|A7HZ45|RNPH_PARL1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|154157961|gb|ABS65178.1| ribonuclease PH [Parvibaculum lavamentivorans DS-1]
          Length = 238

 Score =  348 bits (893), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 146/239 (61%), Positives = 184/239 (76%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ  +MR +S    V+K+AEGSCLV+FGDTH+L TA+LEE+VP +++    GW+T
Sbjct: 1   MRPSGRQPQEMRTVSFEPGVAKHAEGSCLVRFGDTHVLCTASLEERVPPFLKGGGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R++REA  G+Q GR+QEIQR++GR+LRSVVDL ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRSTHERMRREAAQGKQSGRTQEIQRLVGRSLRSVVDLKALGERQISVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVALH C++ M   +     + VLK HVAAISCG+  G P+VDLDY 
Sbjct: 121 ADGGTRTASITGAWVALHQCIEWMR--ARSMISAPVLKDHVAAISCGIYQGVPVVDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST D DANFV+T  G I E+QG+AE   FS + F ++L LAK  IADL++ QK+ +S
Sbjct: 179 EDSTADTDANFVITGKGGICEIQGTAEGEPFSDEEFLSLLALAKTSIADLVRRQKEAVS 237


>gi|153216091|ref|ZP_01950265.1| ribonuclease PH [Vibrio cholerae 1587]
 gi|153819951|ref|ZP_01972618.1| ribonuclease PH [Vibrio cholerae NCTC 8457]
 gi|153821600|ref|ZP_01974267.1| ribonuclease PH [Vibrio cholerae B33]
 gi|153825939|ref|ZP_01978606.1| ribonuclease PH [Vibrio cholerae MZO-2]
 gi|227080431|ref|YP_002808982.1| ribonuclease PH [Vibrio cholerae M66-2]
 gi|229506989|ref|ZP_04396497.1| ribonuclease PH [Vibrio cholerae BX 330286]
 gi|229509359|ref|ZP_04398842.1| ribonuclease PH [Vibrio cholerae B33]
 gi|229512476|ref|ZP_04401948.1| ribonuclease PH [Vibrio cholerae TMA 21]
 gi|229516306|ref|ZP_04405754.1| ribonuclease PH [Vibrio cholerae RC9]
 gi|229527287|ref|ZP_04416680.1| ribonuclease PH [Vibrio cholerae 12129(1)]
 gi|229606497|ref|YP_002877145.1| ribonuclease PH [Vibrio cholerae MJ-1236]
 gi|254291599|ref|ZP_04962388.1| ribonuclease PH [Vibrio cholerae AM-19226]
 gi|297581663|ref|ZP_06943585.1| ribonuclease PH [Vibrio cholerae RC385]
 gi|298500852|ref|ZP_07010654.1| ribonuclease PH [Vibrio cholerae MAK 757]
 gi|9654617|gb|AAF93386.1| ribonuclease PH [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|124114467|gb|EAY33287.1| ribonuclease PH [Vibrio cholerae 1587]
 gi|126509515|gb|EAZ72109.1| ribonuclease PH [Vibrio cholerae NCTC 8457]
 gi|126520887|gb|EAZ78110.1| ribonuclease PH [Vibrio cholerae B33]
 gi|149740347|gb|EDM54483.1| ribonuclease PH [Vibrio cholerae MZO-2]
 gi|150422456|gb|EDN14414.1| ribonuclease PH [Vibrio cholerae AM-19226]
 gi|227008319|gb|ACP04531.1| ribonuclease PH [Vibrio cholerae M66-2]
 gi|229335295|gb|EEO00779.1| ribonuclease PH [Vibrio cholerae 12129(1)]
 gi|229346732|gb|EEO11702.1| ribonuclease PH [Vibrio cholerae RC9]
 gi|229350475|gb|EEO15423.1| ribonuclease PH [Vibrio cholerae TMA 21]
 gi|229353674|gb|EEO18611.1| ribonuclease PH [Vibrio cholerae B33]
 gi|229356094|gb|EEO21013.1| ribonuclease PH [Vibrio cholerae BX 330286]
 gi|229369152|gb|ACQ59575.1| ribonuclease PH [Vibrio cholerae MJ-1236]
 gi|297534070|gb|EFH72909.1| ribonuclease PH [Vibrio cholerae RC385]
 gi|297540356|gb|EFH76415.1| ribonuclease PH [Vibrio cholerae MAK 757]
          Length = 257

 Score =  348 bits (893), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 20  MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 80  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D   H+   +        +KGHVAA+S G+L    + DL+Y 
Sbjct: 140 ADGGTRTASITGASVALADAFAHL--IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 197

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK  + +
Sbjct: 198 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASLLD 257


>gi|330719753|gb|EGG98274.1| Ribonuclease PH [gamma proteobacterium IMCC2047]
          Length = 238

 Score =  347 bits (892), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 127/240 (52%), Positives = 169/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+RE+ +TR  +K+AEGS LV+FGDT ++ TAT E  VP ++R    GW+T
Sbjct: 1   MRPSGRTPDQLREVKITRNYTKHAEGSVLVEFGDTKVICTATAETGVPHFLRGKGVGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R+ REA  G+QGGR+ EIQR+IGR+LR+ +D+  LG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAIDMKKLGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +   S     +  +K  +AA+S G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGACVALVDAVNSLR--SKGAIKADPIKHRIAAVSVGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N +MTDSG  VEVQG+AE+  FS      ML LA+  IA+L +LQ+  ++ 
Sbjct: 179 EDSNAETDLNLIMTDSGGFVEVQGTAEQEPFSATELADMLKLAELGIANLSELQQQALAE 238


>gi|301155568|emb|CBW15036.1| ribonuclease PH (pseudogene) [Haemophilus parainfluenzae T3T1]
          Length = 238

 Score =  347 bits (892), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 118/239 (49%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q R I +TR  +K+AEGS LV+FGDT +L TA+++E VP +++    GW+T
Sbjct: 1   MRPNNRENHQPRPIKITRNYTKHAEGSVLVEFGDTKVLCTASVDESVPRFLKGQNQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +   +N    +  +KG +AAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALCDAINGL--IANGTLKTNPIKGLIAAISVGIVEGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G ++EVQG+AE   FS +    +L LAK     +   Q++ + 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLGLAKQGCEQIFAAQREALG 237


>gi|150388786|ref|YP_001318835.1| ribonuclease PH [Alkaliphilus metalliredigens QYMF]
 gi|149948648|gb|ABR47176.1| ribonuclease PH [Alkaliphilus metalliredigens QYMF]
          Length = 255

 Score =  347 bits (892), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 117/239 (48%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +++R +  T+  +K+A+GS LV+ G+T ++ TA +EE+VP +++N+  GW+TA
Sbjct: 3   RVDGRKFDELRPVKFTKNYTKHAQGSVLVEMGETKVICTAMVEERVPHFLKNSGKGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R  RE+  G+  GR+QEIQR+IGRALRSV+DL ALG R I IDCDVIQA
Sbjct: 63  EYSMLPSSTNTRKIRESSRGKIEGRTQEIQRLIGRALRSVIDLEALGERTIWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA++AL + +  +++   K      +K +V+AIS G++   P++DL Y E
Sbjct: 123 DGGTRTASITGAFIALVEAINSVKEA--KKITYIPIKNYVSAISVGIVNDQPVLDLCYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS   VD N VMTD    +EVQG+ E A FS+D    +L L ++  A LI LQK+V+ +
Sbjct: 181 DSKAMVDMNIVMTDMKEFIEVQGTGEEAPFSRDSLMELLRLGEEGNAQLIALQKEVLGS 239


>gi|169632071|ref|YP_001705807.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter baumannii SDF]
 gi|169797749|ref|YP_001715542.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter baumannii AYE]
 gi|184156383|ref|YP_001844722.1| ribonuclease PH [Acinetobacter baumannii ACICU]
 gi|213155451|ref|YP_002317496.1| ribonuclease PH [Acinetobacter baumannii AB0057]
 gi|215485100|ref|YP_002327341.1| ribonuclease PH [Acinetobacter baumannii AB307-0294]
 gi|239503769|ref|ZP_04663079.1| ribonuclease PH [Acinetobacter baumannii AB900]
 gi|260552994|ref|ZP_05825909.1| ribonuclease PH [Acinetobacter sp. RUH2624]
 gi|260557749|ref|ZP_05829963.1| ribonuclease PH [Acinetobacter baumannii ATCC 19606]
 gi|301347449|ref|ZP_07228190.1| ribonuclease PH [Acinetobacter baumannii AB056]
 gi|301513309|ref|ZP_07238546.1| ribonuclease PH [Acinetobacter baumannii AB058]
 gi|301595797|ref|ZP_07240805.1| ribonuclease PH [Acinetobacter baumannii AB059]
 gi|332852852|ref|ZP_08434434.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013150]
 gi|332866699|ref|ZP_08437161.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013113]
 gi|332873553|ref|ZP_08441502.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6014059]
 gi|226736873|sp|B7H2J6|RNPH_ACIB3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736874|sp|B7IBN8|RNPH_ACIB5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736875|sp|B2I029|RNPH_ACIBC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736876|sp|B0VMP4|RNPH_ACIBS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736877|sp|B0V5W8|RNPH_ACIBY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226737251|sp|A3M0U3|RNPH_ACIBT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|169150676|emb|CAM88586.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter baumannii AYE]
 gi|169150863|emb|CAO99466.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Acinetobacter baumannii]
 gi|183207977|gb|ACC55375.1| RNase PH [Acinetobacter baumannii ACICU]
 gi|193075957|gb|ABO10537.2| ribonuclease PH [Acinetobacter baumannii ATCC 17978]
 gi|213054611|gb|ACJ39513.1| ribonuclease PH [Acinetobacter baumannii AB0057]
 gi|213986624|gb|ACJ56923.1| ribonuclease PH [Acinetobacter baumannii AB307-0294]
 gi|260405236|gb|EEW98733.1| ribonuclease PH [Acinetobacter sp. RUH2624]
 gi|260408922|gb|EEX02226.1| ribonuclease PH [Acinetobacter baumannii ATCC 19606]
 gi|322506253|gb|ADX01707.1| RNase PH [Acinetobacter baumannii 1656-2]
 gi|323516129|gb|ADX90510.1| ribonuclease PH [Acinetobacter baumannii TCDC-AB0715]
 gi|332728966|gb|EGJ60317.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013150]
 gi|332734468|gb|EGJ65583.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6013113]
 gi|332738250|gb|EGJ69128.1| tRNA nucleotidyltransferase [Acinetobacter baumannii 6014059]
          Length = 238

 Score =  347 bits (892), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R  +Q+RE+ +TR  ++YAEGS LV+FG T +L TA+++  VP +++    GW+T
Sbjct: 1   MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+Q GR+QEIQR+IGR+LR++VDL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRCDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +   + K      LKG VAAIS GM     ++DL Y 
Sbjct: 121 ADGGTRTASITGAAVALVDAMNVL--LAQKKIKQDPLKGLVAAISVGMYQDEVLLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N VMT +G  +E+QG+AE   F++    AML +A+  IA+LIK Q++ + 
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELIKKQQEALG 237


>gi|90415478|ref|ZP_01223412.1| ribonuclease PH [marine gamma proteobacterium HTCC2207]
 gi|90332801|gb|EAS47971.1| ribonuclease PH [marine gamma proteobacterium HTCC2207]
          Length = 239

 Score =  347 bits (892), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 123/239 (51%), Positives = 168/239 (70%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+  Q+R + +TR  + +AEGS L++FG T ++ TA++   VP ++R    GW+TA
Sbjct: 3   RPSGRRPEQLRPVKITRDFTCHAEGSVLIEFGKTKVICTASVTPGVPRFLRGKGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG+R+ REA  G+QGGR+QEIQR+IGR+LR+ VD+  LG   I IDCDVIQA
Sbjct: 63  EYGMLPRSTGSRMDREAARGKQGGRTQEIQRLIGRSLRAAVDMKKLGEHTINIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VA+ D ++H++    K  L   L   +A++S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGACVAMVDAIRHLQR--KKAILDDPLLCMIASVSVGIYKGTPVLDLDYPE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VM   G  +EVQG+AE A FS++   AML LAK  IADL+++QK  ++ 
Sbjct: 181 DSKAETDMNVVMNSEGGFIEVQGTAEAAPFSEEELSAMLGLAKQGIADLVRVQKMALAQ 239


>gi|209883567|ref|YP_002287424.1| ribonuclease PH [Oligotropha carboxidovorans OM5]
 gi|226736922|sp|B6JCH9|RNPH_OLICO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|209871763|gb|ACI91559.1| ribonuclease PH [Oligotropha carboxidovorans OM5]
          Length = 238

 Score =  347 bits (892), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 146/239 (61%), Positives = 184/239 (76%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  N++R +SL R V KYAEGSC+VKFGDT +L TATLEE++P W++    GW+T
Sbjct: 1   MRPSGRAPNELRPVSLERGVVKYAEGSCMVKFGDTRVLVTATLEERLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  RV+REA +G+Q GR+ EIQR+IGR+LR+ VDL ALG RQI IDCDVIQ
Sbjct: 61  AEYGMLPRATHERVRREASAGKQSGRTVEIQRLIGRSLRTTVDLVALGERQITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DCLQ M+   N  +   VL+ +VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALADCLQWMK-ARNMLKNDNVLRDNVAAISCGIYNGTPVLDLDYA 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFVMT  G +VEVQG+AER  FSQ+ F  ++ LA++ I  L++LQK  ++
Sbjct: 180 EDSEAETDANFVMTGDGRLVEVQGTAERTPFSQEEFLQLMALAQNGIGRLVELQKIAMA 238


>gi|91774399|ref|YP_544155.1| ribonuclease PH [Methylobacillus flagellatus KT]
 gi|122399230|sp|Q1GXA4|RNPH_METFK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|91708386|gb|ABE48314.1| RNAse PH [Methylobacillus flagellatus KT]
          Length = 238

 Score =  347 bits (892), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 132/239 (55%), Positives = 168/239 (70%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +Q+RE+ + R  +K+AEGS LVKFGDTH+L TA++E+KVP ++R    GW T
Sbjct: 1   MRPSNRAPDQLREVEIIRHYTKHAEGSVLVKFGDTHVLCTASVEDKVPPFLRGRNQGWTT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R+ REA  G+Q GR+QEIQR+IGR+LR+V+DL  LG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMDREAARGKQSGRTQEIQRLIGRSLRAVIDLGKLGERTIHLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VALHD +  M   +N       L+  VAAIS G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAYVALHDAVGFM--LANDMIQESPLRDAVAAISVGVYQGTPVLDLDYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT SG  VE+QG+AE   F +     ML LA+  I  L+  QK+ + 
Sbjct: 179 EDSACDTDMNVVMTGSGGFVEIQGTAEGEPFQRAAMNRMLELAESGIRTLLLKQKEALG 237


>gi|313501268|gb|ADR62634.1| Rph [Pseudomonas putida BIRD-1]
          Length = 240

 Score =  347 bits (892), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 121/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRVADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++      +    LK  +AA+S GM  G  ++DLDY E
Sbjct: 123 DGGTRTASITGAMVALCDALAVIKKRG-GLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  + F AML LA+  I ++ +LQ+  +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGINEIFELQQAALAD 240


>gi|262281423|ref|ZP_06059204.1| ribonuclease PH [Acinetobacter calcoaceticus RUH2202]
 gi|262257249|gb|EEY75986.1| ribonuclease PH [Acinetobacter calcoaceticus RUH2202]
          Length = 238

 Score =  347 bits (892), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 123/239 (51%), Positives = 164/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R+ +Q+RE+ +TR  ++YAEGS LV+FG T +L TA+++  VP +++    GW+T
Sbjct: 1   MRIDQRELDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+Q GR+QEIQR+IGR+LR++VDL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRCDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D +  +   S K      LKG VAAIS GM     ++DL Y 
Sbjct: 121 ADGGTRTAAITGAAVALVDAMNVL--LSQKKIKHDPLKGLVAAISVGMYQDEVLLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N VMT +G  +E+QG+AE   F++    AML +A+  IA+L+K Q++ + 
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELVKKQQEALG 237


>gi|118593717|ref|ZP_01551092.1| ribonuclease PH [Stappia aggregata IAM 12614]
 gi|118433727|gb|EAV40389.1| ribonuclease PH [Stappia aggregata IAM 12614]
          Length = 237

 Score =  347 bits (892), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 144/238 (60%), Positives = 187/238 (78%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R ++L R VSK+AEGSCLVKFGDTH+L TA+LEE+VP W+R    GW+T
Sbjct: 1   MRPSKRAADELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRGQNRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG+R++REA +G+Q GR+QEIQR+IGR+LR+VV+L ALG  QI +DCDVIQ
Sbjct: 61  AEYGMLPRATGDRMRREASAGKQSGRTQEIQRLIGRSLRAVVNLEALGENQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DC++ M+  +      +VLK H+AAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALRDCIEWMK--ARDMVSGEVLKDHIAAISCGIYEGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDST + DANFV+T +G IVE+QG+AE A FS++ F  ++ LAK  I  L+ LQK  I
Sbjct: 179 EDSTAETDANFVLTGAGGIVEIQGTAEGAPFSEEEFGKLMGLAKLGIGKLVDLQKMAI 236


>gi|58425360|gb|AAW74397.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 305

 Score =  347 bits (892), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 124/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R + + R  +++AEGS LV FGDTH+L TA++E +VP ++R    GW+TA
Sbjct: 69  RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTHVLCTASVENRVPNFLRGKGEGWVTA 128

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 129 EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 188

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +       +    L G VAA+S G+  G P++DLDY E
Sbjct: 189 DGGTRTAAITGAYVALADAVNLLLKRGEIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 246

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  + DL  LQ+  ++ 
Sbjct: 247 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGDLFALQRAALAG 305


>gi|297559365|ref|YP_003678339.1| ribonuclease PH [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296843813|gb|ADH65833.1| ribonuclease PH [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 239

 Score =  347 bits (892), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 116/239 (48%), Positives = 159/239 (66%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   Q+R +++TR   ++AEGS LV+FGDT +L  A++E+ VP W R T  GW+TA
Sbjct: 3   RPDGRVPTQLRPVTITRNWLRHAEGSVLVEFGDTRVLCAASVEDGVPRWRRGTGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  RE+V G+ GGR+ EI R++GR+LR+VVD  A+G   I +DCDV+QA
Sbjct: 63  EYAMLPRSTDTRGSRESVRGKIGGRTHEISRLVGRSLRAVVDFKAMGEHTITLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D ++ +     +   +  L G +AA+S G++ G P +DL+Y E
Sbjct: 123 DGGTRTAAITGAYVALADAMKWLRK--RRKLKNNPLTGSLAAVSVGVVQGQPRLDLNYLE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  D D N V+T  G  +EVQG+AE A F +D    +L+LA     +L  +QK  +S 
Sbjct: 181 DSVADTDMNVVITGDGKFIEVQGTAEGAPFDRDLLNQLLDLAVSGCGELTAIQKKALSE 239


>gi|269965906|ref|ZP_06179999.1| ribonuclease PH [Vibrio alginolyticus 40B]
 gi|269829459|gb|EEZ83700.1| ribonuclease PH [Vibrio alginolyticus 40B]
          Length = 240

 Score =  347 bits (892), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 123/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 3   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 63  AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ D       +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 123 ADGGTRTASISGASVAMADAFQHLVDSGKL--KANPMKGHVAAVSVGLLGDEVLCDLEYV 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +   A+L  AK  I +++  QK  ++N
Sbjct: 181 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 240


>gi|62263530|gb|AAX78169.1| unknown protein [synthetic construct]
          Length = 270

 Score =  347 bits (892), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 116/232 (50%), Positives = 162/232 (69%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R + +T   +K+AEGS L++FGDT ++ TA++   VP + +++  GW+T
Sbjct: 27  MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 86

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGRALR+ VDL+A+G   I +DCDVIQ
Sbjct: 87  AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 146

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +A+ D +++M+      + +  L   VAAIS G+    P++DLDY 
Sbjct: 147 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 206

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           EDS  + D N VM  +G I+E+QG+AE   FS++ F  ML LAK  I ++  
Sbjct: 207 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 258


>gi|254373825|ref|ZP_04989308.1| tRNA nucleotidyltransferase [Francisella novicida GA99-3548]
 gi|151571546|gb|EDN37200.1| tRNA nucleotidyltransferase [Francisella novicida GA99-3548]
          Length = 235

 Score =  347 bits (891), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 116/232 (50%), Positives = 161/232 (69%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R + +T   +K+AEGS L++FGDT ++ TA++   VP + +++  GW+T
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVSGVPKFKKDSGEGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGRALR+ VDL+A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +A+ D +++M+      + +  L   VAAIS G+    P++DLDY 
Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           EDS  + D N VM   G I+E+QG+AE   FS++ F  ML LAK  I ++  
Sbjct: 181 EDSNAETDMNVVMNSKGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 232


>gi|307943385|ref|ZP_07658729.1| ribonuclease PH [Roseibium sp. TrichSKD4]
 gi|307773015|gb|EFO32232.1| ribonuclease PH [Roseibium sp. TrichSKD4]
          Length = 237

 Score =  347 bits (891), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 146/235 (62%), Positives = 186/235 (79%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R ++L R VSK+AEGSCLVKFGDTH+L TA+LEE+VP W+R  + GW+T
Sbjct: 1   MRPSKRANDELRAVTLERGVSKHAEGSCLVKFGDTHVLCTASLEERVPPWLRGQQRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG+R++REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG  QI +DCDVIQ
Sbjct: 61  AEYGMLPRATGDRMRREASAGKQSGRTQEIQRLIGRSLRAVVDLEALGECQISVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG+WVAL DC++ M+  +       VLK H+AAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGSWVALRDCIEWMK--ARDMVKKDVLKDHIAAISCGIHDGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDST + DANFVMT SG IVE+QG+AE A FS++ F  ++ LAK  I  L+ LQK
Sbjct: 179 EDSTAETDANFVMTGSGGIVEIQGTAEGAPFSEEEFGQLMGLAKAGIGRLVDLQK 233


>gi|107022076|ref|YP_620403.1| ribonuclease PH [Burkholderia cenocepacia AU 1054]
 gi|116689020|ref|YP_834643.1| ribonuclease PH [Burkholderia cenocepacia HI2424]
 gi|170732309|ref|YP_001764256.1| ribonuclease PH [Burkholderia cenocepacia MC0-3]
 gi|254246044|ref|ZP_04939365.1| RNase PH [Burkholderia cenocepacia PC184]
 gi|123245179|sp|Q1BY75|RNPH_BURCA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228269|sp|A0K5H3|RNPH_BURCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736892|sp|B1JXM2|RNPH_BURCC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|105892265|gb|ABF75430.1| RNAse PH [Burkholderia cenocepacia AU 1054]
 gi|116647109|gb|ABK07750.1| RNAse PH [Burkholderia cenocepacia HI2424]
 gi|124870820|gb|EAY62536.1| RNase PH [Burkholderia cenocepacia PC184]
 gi|169815551|gb|ACA90134.1| ribonuclease PH [Burkholderia cenocepacia MC0-3]
          Length = 246

 Score =  347 bits (891), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 132/238 (55%), Positives = 172/238 (72%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ +++R+++LTR  +K+AEGS LV+FGDT +L TA++ E+VP ++R    GW+TA
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVLCTASVAERVPEFLRERGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +            +  HVAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSTLIAAGKL--ARSPITDHVAAISVGVYEGAPVLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMT +G  VEVQG+AE   FS+    A+L+LA+  IA+L++LQKDV+ 
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQGGIAELVQLQKDVLG 242


>gi|307730700|ref|YP_003907924.1| ribonuclease PH [Burkholderia sp. CCGE1003]
 gi|307585235|gb|ADN58633.1| ribonuclease PH [Burkholderia sp. CCGE1003]
          Length = 246

 Score =  347 bits (891), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 127/238 (53%), Positives = 167/238 (70%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R++ +TR  +K+AEGS LV+FGDT ++ TA++ E VP ++R+   GW+TA
Sbjct: 7   RPSGRLADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAETVPSFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALRSV DL  LG+R + IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +    +       +   VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLLAAGHI--EGSPISDFVAAISVGIYDGVPVLDLDYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMT +G  VE+QG+AE   FS++   A+L+LA D IA LI  QK+ + 
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSREEMNALLDLASDGIATLIARQKEALE 242


>gi|91225015|ref|ZP_01260274.1| ribonuclease PH [Vibrio alginolyticus 12G01]
 gi|91190261|gb|EAS76531.1| ribonuclease PH [Vibrio alginolyticus 12G01]
          Length = 238

 Score =  347 bits (891), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 124/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GWIT
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ D       +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKL--KANPMKGHVAAVSVGLLGDEVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +   A+L  AK  I +++  QK  ++N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 238


>gi|229521070|ref|ZP_04410491.1| ribonuclease PH [Vibrio cholerae TM 11079-80]
 gi|229341955|gb|EEO06956.1| ribonuclease PH [Vibrio cholerae TM 11079-80]
          Length = 257

 Score =  347 bits (891), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 20  MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 80  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D   H+   +        +KGHVAA+S G+L    + DL+Y 
Sbjct: 140 ADGGTRTASITGASVALADAFAHL--IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 197

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK  + +
Sbjct: 198 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASLLD 257


>gi|54307419|ref|YP_128439.1| putative ribonuclease PH [Photobacterium profundum SS9]
 gi|90412679|ref|ZP_01220680.1| putative ribonuclease PH [Photobacterium profundum 3TCK]
 gi|61215939|sp|Q6LVN8|RNPH_PHOPR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|46911839|emb|CAG18637.1| putative ribonuclease PH [Photobacterium profundum SS9]
 gi|90326254|gb|EAS42673.1| putative ribonuclease PH [Photobacterium profundum 3TCK]
          Length = 238

 Score =  347 bits (891), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 127/240 (52%), Positives = 170/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R I++TR  + +AEGS LV+FGDT ++ TA++EE VP W++    GW+T
Sbjct: 1   MRPSGRSTSQVRPITITRNFTAHAEGSVLVEFGDTKVICTASVEENVPRWLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA SG+QGGR+ EIQR+I R+LR+ VDL ALG + I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNRREASSGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  M +     +    +KG VAA+S G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASITGAMVALVDAVNSMIEKGTLKK--SPIKGMVAAVSVGIYKGEAICDLEYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G ++E+QG+AE   FS +   AML LAKD IAD++ +QK  + +
Sbjct: 179 EDSAAETDMNVVMTEEGKMIEIQGTAEGEAFSHEELLAMLALAKDGIADIVTMQKQALES 238


>gi|121593343|ref|YP_985239.1| ribonuclease PH [Acidovorax sp. JS42]
 gi|120605423|gb|ABM41163.1| RNAse PH [Acidovorax sp. JS42]
          Length = 244

 Score =  347 bits (891), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 129/239 (53%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R I +TR  + +AEG+ L++FG+T +L TA++EEKVP   R +  GW+TA
Sbjct: 8   RSGGRALDQLRPIRITRHYTMHAEGAVLIEFGNTRVLCTASVEEKVPPHKRGSGEGWVTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR+V DL ALG R I IDCDVIQA
Sbjct: 68  EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTIQIDCDVIQA 127

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGAWVA  D +  +         +  L G VAA+S G++ G P++DL+Y E
Sbjct: 128 DGGTRTAAITGAWVAAQDAVNTLLAAGKI--SASPLTGAVAAVSVGIVQGQPLLDLEYVE 185

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   D D N VMT +GH VEVQG+AE ATFS+     +L LA+  IA+L+ LQ+  + N
Sbjct: 186 DVACDTDMNVVMTGTGHYVEVQGTAEGATFSRQEMDQLLALAEKGIAELLALQRQSLRN 244


>gi|78065577|ref|YP_368346.1| ribonuclease PH [Burkholderia sp. 383]
 gi|123569063|sp|Q39IL4|RNPH_BURS3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|77966322|gb|ABB07702.1| RNAse PH [Burkholderia sp. 383]
          Length = 243

 Score =  347 bits (891), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 132/238 (55%), Positives = 172/238 (72%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ + +R+++LTR  +K+AEGS LV+FGDT +L TA++ E+VP ++R+   GW+TA
Sbjct: 7   RPSGRRADALRKVALTRHYTKHAEGSVLVEFGDTKVLCTASVSERVPDFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +            +  HVAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLIAAGKI--TRSPITDHVAAISVGVYEGAPVLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMT +G  VEVQG+AE   FS+    A+L+LA+  IA+L++LQKDV+ 
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQGGIAELVQLQKDVLG 242


>gi|148981863|ref|ZP_01816548.1| ribonuclease PH [Vibrionales bacterium SWAT-3]
 gi|145960714|gb|EDK26055.1| ribonuclease PH [Vibrionales bacterium SWAT-3]
          Length = 238

 Score =  347 bits (891), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 120/240 (50%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEIMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D ++ + D     +    +KGHVAA+S G++    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAIKSLIDSGKLKK--NPMKGHVAAVSVGIVGAEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +    +L LA   IAD+++ QK  +++
Sbjct: 179 EDSAADTDMNVVMTEDGKMIEIQGTAEGEPFSHEELMKLLALANKGIADIVEAQKAALAD 238


>gi|28867317|ref|NP_789936.1| ribonuclease PH [Pseudomonas syringae pv. tomato str. DC3000]
 gi|61216049|sp|Q88BE0|RNPH_PSESM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|28850551|gb|AAO53631.1| ribonuclease PH [Pseudomonas syringae pv. tomato str. DC3000]
 gi|331018562|gb|EGH98618.1| ribonuclease PH [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 240

 Score =  347 bits (891), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 165/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  +       +    LK  +AA+S GM  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALADAL-KVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  +   AML LA+  + +L ++Q+  +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEMQRAALAD 240


>gi|328675533|gb|AEB28208.1| Ribonuclease PH [Francisella cf. novicida 3523]
          Length = 235

 Score =  347 bits (891), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 115/232 (49%), Positives = 162/232 (69%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R + +T   +K+AEGS L++FGDT ++ TA++   VP + +++  GW+T
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGRALR+ VDL+A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +A+ D +++M+      + +  L   VAA+S G+    P++DLDY 
Sbjct: 121 ADGGTRTASITGASLAIADAIKYMKQNGMLDEQANPLLSQVAAVSVGIYNNEPVLDLDYD 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           EDS  + D N VM  +G I+E+QG+AE   FS++ F  ML LAK  I ++  
Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 232


>gi|226942447|ref|YP_002797520.1| ribonuclease PH [Azotobacter vinelandii DJ]
 gi|259494117|sp|C1DI48|RNPH_AZOVD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226717374|gb|ACO76545.1| ribonuclease PH [Azotobacter vinelandii DJ]
          Length = 239

 Score =  347 bits (891), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 123/239 (51%), Positives = 164/239 (68%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +++AEGS LV+FGDT ++ T + E  VP +++    GW+TA
Sbjct: 3   RPSGRAPHQLRPIRITRNYTRHAEGSVLVEFGDTRVICTVSAEAGVPRFLKGQGKGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R+ REA  GRQGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERMAREASRGRQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++           LK  VAA+S G+  G PI+DLDY E
Sbjct: 123 DGGTRTASITGAMVALVDALAVLKKRGAL--KGDPLKQMVAAVSVGIYQGEPILDLDYPE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMTD+G  +EVQG+AE   F  +   AML LA   I +L +LQ+ V+++
Sbjct: 181 DSDAETDLNVVMTDAGGFIEVQGTAEGEPFQPEELNAMLALATQGIRELFELQRAVLAD 239


>gi|315127898|ref|YP_004069901.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas sp.
           SM9913]
 gi|315016412|gb|ADT69750.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas sp.
           SM9913]
          Length = 237

 Score =  347 bits (891), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 121/239 (50%), Positives = 161/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  NQ+R ++ TR  + +AEGS LV+FG+T +L TAT+E  VP +++    GW+ 
Sbjct: 1   MRPSERTPNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVEAGVPRFMKGQGKGWVN 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I R+LR+ +DL ALG   I IDCDVIQ
Sbjct: 61  AEYGMLPRATHTRNSREATRGKQGGRTMEIQRLIARSLRAAIDLKALGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L +M   +     S  LK  +AAIS G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASISGACVALVDALTYMR--AKGMINSNPLKHMIAAISVGIYKGQAISDLEYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N ++T++G I+EVQG+AE   FS D    +L LAK  I ++I +QK  ++
Sbjct: 179 EDSDAETDMNVILTETGKIIEVQGTAEGEPFSFDELDELLTLAKHSIREIIDVQKQALA 237


>gi|300856830|ref|YP_003781814.1| ribonuclease PH [Clostridium ljungdahlii DSM 13528]
 gi|300436945|gb|ADK16712.1| ribonuclease PH [Clostridium ljungdahlii DSM 13528]
          Length = 248

 Score =  347 bits (891), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 112/239 (46%), Positives = 162/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ +Q+R I +TR  +KYAEGS L++ GDT ++ TA++E++VP +++    GWIT
Sbjct: 1   MRIDGRKYDQIRPIKITRDYTKYAEGSVLIETGDTKVICTASIEDRVPPFLKGKGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            EY MLPR+T  R  R+   G+  GR+ EIQR+IGRALRSVVDL A+G + I +DCDVIQ
Sbjct: 61  CEYNMLPRATQVRKIRDITKGKIDGRTMEIQRIIGRALRSVVDLKAMGEKTIWVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA+VAL D +  +   +        ++  V+AIS G++    ++DL Y 
Sbjct: 121 ADGGTRTASISGAFVALVDAVNKLHKRTPFTVY--PIRDFVSAISVGIVNNVRMLDLCYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD N VMTDSG  VE+QG+ E++ F++D    +L L +  I ++I  QK+ + 
Sbjct: 179 EDSRAQVDMNIVMTDSGEFVEIQGTGEQSPFTRDDLQELLRLGEKGINNMIHAQKESLK 237


>gi|328471748|gb|EGF42625.1| ribonuclease PH [Vibrio parahaemolyticus 10329]
          Length = 238

 Score =  347 bits (890), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 123/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ D       +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKL--KANPMKGHVAAVSVGLLGDEVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +   A+L  AK  I ++I  QK  ++N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIIAAQKAALAN 238


>gi|95113322|emb|CAK18050.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
           [Pseudomonas entomophila L48]
          Length = 253

 Score =  347 bits (890), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 16  RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 75

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 76  EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 135

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++      +    LK  +AA+S GM  G  ++DLDY E
Sbjct: 136 DGGTRTASITGAMVALCDALAVIKKRG-GLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLE 194

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  + F AML LA+  + ++ +LQ+  +++
Sbjct: 195 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMGEIFELQQAALAD 253


>gi|120597163|ref|YP_961737.1| ribonuclease PH [Shewanella sp. W3-18-1]
 gi|146291563|ref|YP_001181987.1| ribonuclease PH [Shewanella putrefaciens CN-32]
 gi|166228319|sp|A4Y2K5|RNPH_SHEPC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228321|sp|A1RET8|RNPH_SHESW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|120557256|gb|ABM23183.1| RNAse PH [Shewanella sp. W3-18-1]
 gi|145563253|gb|ABP74188.1| RNAse PH [Shewanella putrefaciens CN-32]
 gi|319424735|gb|ADV52809.1| ribonuclease PH [Shewanella putrefaciens 200]
          Length = 237

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 121/239 (50%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q R I++TR+ + +AEGS LV+FG+T +L TA+  E VP +++    GW+T
Sbjct: 1   MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+Q GR+QEIQR+IGRALR+ VD+ ALG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L            S  LK  +AA+S G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALNWAR--GKGIIKSNPLKFLIAAVSVGIYKGEAISDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G I+E+QG+AE   F+ +    +L LAK+ I +++ +QK  ++
Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFTHEELIELLGLAKNSIREIVDVQKAALN 237


>gi|17988058|ref|NP_540692.1| ribonuclease PH [Brucella melitensis bv. 1 str. 16M]
 gi|225851706|ref|YP_002731939.1| ribonuclease PH [Brucella melitensis ATCC 23457]
 gi|256045962|ref|ZP_05448834.1| ribonuclease PH [Brucella melitensis bv. 1 str. Rev.1]
 gi|256112675|ref|ZP_05453596.1| ribonuclease PH [Brucella melitensis bv. 3 str. Ether]
 gi|256264784|ref|ZP_05467316.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|260563245|ref|ZP_05833731.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|265992375|ref|ZP_06104932.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994118|ref|ZP_06106675.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|21759402|sp|Q8YEV2|RNPH_BRUME RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808582|sp|C0RGM7|RNPH_BRUMB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|17983807|gb|AAL52956.1| ribonuclease ph [Brucella melitensis bv. 1 str. 16M]
 gi|225640071|gb|ACN99984.1| ribonuclease PH [Brucella melitensis ATCC 23457]
 gi|260153261|gb|EEW88353.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|262765099|gb|EEZ11020.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|263003441|gb|EEZ15734.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263095193|gb|EEZ18862.1| tRNA nucleotidyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408195|gb|ADZ65260.1| ribonuclease PH [Brucella melitensis M28]
 gi|326537910|gb|ADZ86125.1| ribonuclease PH [Brucella melitensis M5-90]
          Length = 238

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 151/239 (63%), Positives = 188/239 (78%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  ++MR IS  R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RNT  GW+T
Sbjct: 1   MRPSKRAADEMRTISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG R++REA +G+QGGR+QEIQR+IGR+LR+VVD+ ALG  QI +DCDVIQ
Sbjct: 61  AEYGMLPRSTGERMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEMQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG WVALH+CL+ ME      ++ +VLK HVAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGGWVALHECLRWME-ARQMVRVEKVLKDHVAAISCGIYEGVPVLDLDYA 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D+NFVMT  G IVE+QG+AE   FS++ F A++ LA+  I  L+ LQK  ++
Sbjct: 180 EDSVAETDSNFVMTGKGGIVEIQGTAEGVPFSEEEFGALMKLARSGIDRLVSLQKMAVA 238


>gi|332308581|ref|YP_004436432.1| ribonuclease PH [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175910|gb|AEE25164.1| ribonuclease PH [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 237

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 116/239 (48%), Positives = 158/239 (66%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q+R +++TR  + +AEGS L++FG+T +L  A++ E VP +++    GW+T
Sbjct: 1   MRPNDRTASQIRPVTITRNFTCHAEGSVLIEFGNTKVLCNASVTEGVPRFMKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+QGGR+ EIQR+I R+LR+ +DL  LG   I++DCDVIQ
Sbjct: 61  AEYSMLPRATHTRSDREAARGKQGGRTLEIQRLIARSLRAALDLKLLGENTIVVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  M   S     +  +K  +AAIS G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALTWMR--SKGIIKTNPMKHMIAAISVGIYKGNAIADLEYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMTD+G ++EVQG+AE   FS +    ML LAK  I +L   QK  ++
Sbjct: 179 EDSDAETDMNVVMTDTGKMIEVQGTAEGEPFSIEEMHEMLELAKHGIRELFDEQKAALN 237


>gi|254228598|ref|ZP_04922023.1| ribonuclease PH [Vibrio sp. Ex25]
 gi|151938980|gb|EDN57813.1| ribonuclease PH [Vibrio sp. Ex25]
          Length = 240

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 123/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 3   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 63  AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ D       +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 123 ADGGTRTASISGASVAMADAFQHLVDSGKL--KANPMKGHVAAVSVGLLGDDVLCDLEYV 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +   A+L  AK  I +++  QK  ++N
Sbjct: 181 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKIGITEIVAAQKAALAN 240


>gi|251793341|ref|YP_003008069.1| ribonuclease PH [Aggregatibacter aphrophilus NJ8700]
 gi|247534736|gb|ACS97982.1| ribonuclease PH [Aggregatibacter aphrophilus NJ8700]
          Length = 238

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 124/240 (51%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  NQ R I +TR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GW+T
Sbjct: 1   MRPNQRANNQTRPIKITRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGLGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   +N       LKG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALCDALNGL--VANGTLSKNPLKGLVAAISVGIVDGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK     + + Q+  +++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCDIIFQTQRAALAD 238


>gi|325524722|gb|EGD02709.1| ribonuclease PH [Burkholderia sp. TJI49]
          Length = 246

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 130/238 (54%), Positives = 170/238 (71%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ + +R+++LTR  +K+AEGS LV+FGDT ++ TA++ E+VP ++R    GW+TA
Sbjct: 7   RPSGRRADALRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +            +  HVAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLIAAGKL--ERSPIVDHVAAISVGVYEGTPVLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMT +G  VEVQG+AE   FS+    A+L+LA+  I +L++LQKDV+ 
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQSGIGELVQLQKDVLG 242


>gi|62289149|ref|YP_220942.1| ribonuclease PH [Brucella abortus bv. 1 str. 9-941]
 gi|82699088|ref|YP_413662.1| ribonuclease PH [Brucella melitensis biovar Abortus 2308]
 gi|148559274|ref|YP_001258205.1| ribonuclease PH [Brucella ovis ATCC 25840]
 gi|161618161|ref|YP_001592048.1| ribonuclease PH [Brucella canis ATCC 23365]
 gi|163842442|ref|YP_001626846.1| ribonuclease PH [Brucella suis ATCC 23445]
 gi|189023423|ref|YP_001934191.1| ribonuclease PH [Brucella abortus S19]
 gi|225626711|ref|ZP_03784750.1| ribonuclease PH [Brucella ceti str. Cudo]
 gi|237814642|ref|ZP_04593640.1| ribonuclease PH [Brucella abortus str. 2308 A]
 gi|254690474|ref|ZP_05153728.1| ribonuclease PH [Brucella abortus bv. 6 str. 870]
 gi|254694963|ref|ZP_05156791.1| ribonuclease PH [Brucella abortus bv. 3 str. Tulya]
 gi|254696594|ref|ZP_05158422.1| ribonuclease PH [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700978|ref|ZP_05162806.1| ribonuclease PH [Brucella suis bv. 5 str. 513]
 gi|254705349|ref|ZP_05167177.1| ribonuclease PH [Brucella suis bv. 3 str. 686]
 gi|254707138|ref|ZP_05168966.1| ribonuclease PH [Brucella pinnipedialis M163/99/10]
 gi|254709319|ref|ZP_05171130.1| ribonuclease PH [Brucella pinnipedialis B2/94]
 gi|254713260|ref|ZP_05175071.1| ribonuclease PH [Brucella ceti M644/93/1]
 gi|254716387|ref|ZP_05178198.1| ribonuclease PH [Brucella ceti M13/05/1]
 gi|254718387|ref|ZP_05180198.1| ribonuclease PH [Brucella sp. 83/13]
 gi|254731507|ref|ZP_05190085.1| ribonuclease PH [Brucella abortus bv. 4 str. 292]
 gi|256030842|ref|ZP_05444456.1| ribonuclease PH [Brucella pinnipedialis M292/94/1]
 gi|256060312|ref|ZP_05450485.1| ribonuclease PH [Brucella neotomae 5K33]
 gi|256158871|ref|ZP_05456725.1| ribonuclease PH [Brucella ceti M490/95/1]
 gi|256254248|ref|ZP_05459784.1| ribonuclease PH [Brucella ceti B1/94]
 gi|256258730|ref|ZP_05464266.1| ribonuclease PH [Brucella abortus bv. 9 str. C68]
 gi|256368637|ref|YP_003106143.1| ribonuclease PH [Brucella microti CCM 4915]
 gi|260169746|ref|ZP_05756557.1| ribonuclease PH [Brucella sp. F5/99]
 gi|260546446|ref|ZP_05822186.1| ribonuclease PH [Brucella abortus NCTC 8038]
 gi|260567190|ref|ZP_05837660.1| ribonuclease PH [Brucella suis bv. 4 str. 40]
 gi|260756028|ref|ZP_05868376.1| tRNA nucleotidyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260759252|ref|ZP_05871600.1| tRNA nucleotidyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260760975|ref|ZP_05873318.1| tRNA nucleotidyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260885049|ref|ZP_05896663.1| tRNA nucleotidyltransferase [Brucella abortus bv. 9 str. C68]
 gi|261215305|ref|ZP_05929586.1| tRNA nucleotidyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|261218173|ref|ZP_05932454.1| tRNA nucleotidyltransferase [Brucella ceti M13/05/1]
 gi|261221399|ref|ZP_05935680.1| tRNA nucleotidyltransferase [Brucella ceti B1/94]
 gi|261314614|ref|ZP_05953811.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261316830|ref|ZP_05956027.1| tRNA nucleotidyltransferase [Brucella pinnipedialis B2/94]
 gi|261320979|ref|ZP_05960176.1| tRNA nucleotidyltransferase [Brucella ceti M644/93/1]
 gi|261324287|ref|ZP_05963484.1| tRNA nucleotidyltransferase [Brucella neotomae 5K33]
 gi|261751499|ref|ZP_05995208.1| tRNA nucleotidyltransferase [Brucella suis bv. 5 str. 513]
 gi|261756063|ref|ZP_05999772.1| tRNA nucleotidyltransferase [Brucella suis bv. 3 str. 686]
 gi|261759287|ref|ZP_06002996.1| ribonuclease PH [Brucella sp. F5/99]
 gi|265983351|ref|ZP_06096086.1| tRNA nucleotidyltransferase [Brucella sp. 83/13]
 gi|265987900|ref|ZP_06100457.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M292/94/1]
 gi|265997361|ref|ZP_06109918.1| tRNA nucleotidyltransferase [Brucella ceti M490/95/1]
 gi|294851571|ref|ZP_06792244.1| ribonuclease PH [Brucella sp. NVSL 07-0026]
 gi|297247565|ref|ZP_06931283.1| ribonuclease PH [Brucella abortus bv. 5 str. B3196]
 gi|306839620|ref|ZP_07472424.1| ribonuclease PH [Brucella sp. NF 2653]
 gi|306842542|ref|ZP_07475193.1| ribonuclease PH [Brucella sp. BO2]
 gi|306844440|ref|ZP_07477030.1| ribonuclease PH [Brucella sp. BO1]
 gi|75497456|sp|Q57FK3|RNPH_BRUAB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123546812|sp|Q2YP33|RNPH_BRUA2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228268|sp|A5VNA8|RNPH_BRUO2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043754|sp|A9M7B8|RNPH_BRUC2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043755|sp|B0CJ32|RNPH_BRUSI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736890|sp|B2S8G4|RNPH_BRUA1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|62195281|gb|AAX73581.1| Rph, ribonuclease PH [Brucella abortus bv. 1 str. 9-941]
 gi|82615189|emb|CAJ10128.1| 3' exoribonuclease:Ribonuclease PH [Brucella melitensis biovar
           Abortus 2308]
 gi|148370531|gb|ABQ60510.1| ribonuclease PH [Brucella ovis ATCC 25840]
 gi|161334972|gb|ABX61277.1| ribonuclease PH [Brucella canis ATCC 23365]
 gi|163673165|gb|ABY37276.1| ribonuclease PH [Brucella suis ATCC 23445]
 gi|189018995|gb|ACD71717.1| Ribonuclease PH [Brucella abortus S19]
 gi|225618368|gb|EEH15411.1| ribonuclease PH [Brucella ceti str. Cudo]
 gi|237789479|gb|EEP63689.1| ribonuclease PH [Brucella abortus str. 2308 A]
 gi|255998795|gb|ACU47194.1| ribonuclease PH [Brucella microti CCM 4915]
 gi|260096553|gb|EEW80429.1| ribonuclease PH [Brucella abortus NCTC 8038]
 gi|260156708|gb|EEW91788.1| ribonuclease PH [Brucella suis bv. 4 str. 40]
 gi|260669570|gb|EEX56510.1| tRNA nucleotidyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260671407|gb|EEX58228.1| tRNA nucleotidyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676136|gb|EEX62957.1| tRNA nucleotidyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260874577|gb|EEX81646.1| tRNA nucleotidyltransferase [Brucella abortus bv. 9 str. C68]
 gi|260916912|gb|EEX83773.1| tRNA nucleotidyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|260919983|gb|EEX86636.1| tRNA nucleotidyltransferase [Brucella ceti B1/94]
 gi|260923262|gb|EEX89830.1| tRNA nucleotidyltransferase [Brucella ceti M13/05/1]
 gi|261293669|gb|EEX97165.1| tRNA nucleotidyltransferase [Brucella ceti M644/93/1]
 gi|261296053|gb|EEX99549.1| tRNA nucleotidyltransferase [Brucella pinnipedialis B2/94]
 gi|261300267|gb|EEY03764.1| tRNA nucleotidyltransferase [Brucella neotomae 5K33]
 gi|261303640|gb|EEY07137.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261739271|gb|EEY27267.1| ribonuclease PH [Brucella sp. F5/99]
 gi|261741252|gb|EEY29178.1| tRNA nucleotidyltransferase [Brucella suis bv. 5 str. 513]
 gi|261745816|gb|EEY33742.1| tRNA nucleotidyltransferase [Brucella suis bv. 3 str. 686]
 gi|262551829|gb|EEZ07819.1| tRNA nucleotidyltransferase [Brucella ceti M490/95/1]
 gi|264660097|gb|EEZ30358.1| tRNA nucleotidyltransferase [Brucella pinnipedialis M292/94/1]
 gi|264661943|gb|EEZ32204.1| tRNA nucleotidyltransferase [Brucella sp. 83/13]
 gi|294820160|gb|EFG37159.1| ribonuclease PH [Brucella sp. NVSL 07-0026]
 gi|297174734|gb|EFH34081.1| ribonuclease PH [Brucella abortus bv. 5 str. B3196]
 gi|306275253|gb|EFM57003.1| ribonuclease PH [Brucella sp. BO1]
 gi|306287398|gb|EFM58878.1| ribonuclease PH [Brucella sp. BO2]
 gi|306405318|gb|EFM61593.1| ribonuclease PH [Brucella sp. NF 2653]
          Length = 238

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 151/239 (63%), Positives = 188/239 (78%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  ++MR IS  R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RNT  GW+T
Sbjct: 1   MRPSKRAADEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG R++REA +G+QGGR+QEIQR+IGR+LR+VVD+ ALG  QI +DCDVIQ
Sbjct: 61  AEYGMLPRSTGERMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEMQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG WVALH+CL+ ME      ++ +VLK HVAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGGWVALHECLRWME-ARQMVRVEKVLKDHVAAISCGIYEGVPVLDLDYA 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D+NFVMT  G IVE+QG+AE   FS++ F A++ LA+  I  L+ LQK  ++
Sbjct: 180 EDSVAETDSNFVMTGKGGIVEIQGTAEGVPFSEEEFGALMKLARSGIDRLVSLQKMAVA 238


>gi|332532804|ref|ZP_08408678.1| ribonuclease PH [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037831|gb|EGI74281.1| ribonuclease PH [Pseudoalteromonas haloplanktis ANT/505]
          Length = 237

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 124/239 (51%), Positives = 161/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  NQ+R ++ TR  + +AEGS LV+FG+T +L TAT+E  VP +++    GWI 
Sbjct: 1   MRPSERTPNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWIN 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I IDCDVIQ
Sbjct: 61  AEYGMLPRATHTRNAREAARGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L HM   +     S  LK  +AAIS G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASISGACVALVDALTHMR--AKGMINSNPLKHMIAAISVGIYKGQAISDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N ++T++G I+E+QG+AE   FS D    +L LAK  I ++I +QK  ++
Sbjct: 179 EDSAAETDMNVILTETGKIIEIQGTAEGEPFSFDELDELLTLAKHSIREIIDVQKQALA 237


>gi|72162764|ref|YP_290421.1| ribonuclease PH [Thermobifida fusca YX]
 gi|71916496|gb|AAZ56398.1| RNAse PH [Thermobifida fusca YX]
          Length = 239

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 116/239 (48%), Positives = 162/239 (67%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R + +TR   ++AEGS L++FG+T +L  AT+EE VP W R T  GW+TA
Sbjct: 3   RPDGRTPNQLRPVRITRNWLRHAEGSALIEFGETRVLCAATVEEGVPRWRRGTGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+VVD  A+G   I +DCDV+QA
Sbjct: 63  EYAMLPRATDTRSARESVKGKIGGRTHEISRLIGRSLRAVVDFKAMGEYTITLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D ++++    +    +  L G VAA+S G++ G P +DL+Y E
Sbjct: 123 DGGTRTAAITGAYVALVDAVRYLRKQLDL--KTNPLTGSVAAVSVGIVQGQPRLDLNYLE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N V+T +G  +E+QG+AE A F +     +L+LA    A+L ++QK  +S 
Sbjct: 181 DSVAETDMNVVVTGTGEFIEIQGTAENAPFDRKLLDTLLDLAVAGCAELTEIQKKALSE 239


>gi|61215919|sp|Q6FFX5|RNPH_ACIAD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
          Length = 238

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 121/239 (50%), Positives = 160/239 (66%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MRL  R  +Q+R++ +TR  ++YAEGS LV+FG T +L TA+++  VP +++    GW+T
Sbjct: 1   MRLDQRALDQLRDVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR++VDL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHTRSDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D +  + +   K      LKG VAAIS G+     ++DL Y 
Sbjct: 121 ADGGTRTAAITGAAVALIDAMNVLLE--KKKIKQDPLKGLVAAISVGIYQDEVLLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N VMT +G  +E+QG+AE   F++    AML +A+  I +LIK Q+  + 
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEEKPFTRTQANAMLEVAEKGIQELIKKQQQALG 237


>gi|220932375|ref|YP_002509283.1| ribonuclease PH [Halothermothrix orenii H 168]
 gi|219993685|gb|ACL70288.1| ribonuclease PH [Halothermothrix orenii H 168]
          Length = 246

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 113/239 (47%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR+ +Q+R++ ++R+ +KYAEGS L++ GDT ++ TA++EE VP ++R    GW+T
Sbjct: 7   LRVDGRKNDQLRDVKISRQYTKYAEGSVLIETGDTKVICTASVEESVPPFLRGQNTGWLT 66

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY +LPRST +R  RE   GR  GR+QEIQR+IGR+LR+VVDL  LG R I +DCDVIQ
Sbjct: 67  AEYSLLPRSTHSRTIREVARGRLSGRTQEIQRLIGRSLRAVVDLGKLGERTIWVDCDVIQ 126

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D + ++ +          L   +AA S G++ G  ++DL Y 
Sbjct: 127 ADGGTRTASITGAYVALVDAINYLIE--EGVLEESPLNSFMAATSVGVVDGEMLLDLCYE 184

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED    VD N VMT+ G ++E+QG+AE+  FS+D    +++LA+  I +L+  QK  + 
Sbjct: 185 EDFQAQVDMNIVMTEDGRVIEIQGTAEKFPFSRDQMNTLMDLAEKGIRELVSFQKKSLG 243


>gi|88705452|ref|ZP_01103163.1| ribonuclease PH (RNase PH) [Congregibacter litoralis KT71]
 gi|88700542|gb|EAQ97650.1| ribonuclease PH (RNase PH) [Congregibacter litoralis KT71]
          Length = 269

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 125/239 (52%), Positives = 169/239 (70%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R+IS+ R+ + +AEGS LV FG+T ++ TA++E+ VP ++R    GWITA
Sbjct: 32  RPSGRAPDQLRDISIERQFTCHAEGSVLVSFGNTRVICTASVEDSVPRFLRGKNSGWITA 91

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG+R+ REA  G+QGGR+QEIQR+IGR+LR+ VDLS LG   I +DCDVIQA
Sbjct: 92  EYGMLPRSTGSRMGREAARGKQGGRTQEIQRLIGRSLRAAVDLSKLGEHTITLDCDVIQA 151

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  ++   +K   +  L+  VA++S G+  G  ++DLDY E
Sbjct: 152 DGGTRTASITGAFVALVDAINGLQR--DKKISTDPLRHFVASVSVGVYQGEAVLDLDYPE 209

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  D D N VM + G  +EVQG+AE A FS+     ML+LA   IA LI  Q+  ++ 
Sbjct: 210 DSKADTDLNVVMAEGGEFIEVQGTAEAAPFSRTDLDKMLDLASGGIATLIDCQRAALAT 268


>gi|222110072|ref|YP_002552336.1| ribonuclease ph [Acidovorax ebreus TPSY]
 gi|221729516|gb|ACM32336.1| ribonuclease PH [Acidovorax ebreus TPSY]
          Length = 244

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 128/239 (53%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R I +TR  + +AEG+ L++FG+T +L TA++EEKVP   R +  GW+TA
Sbjct: 8   RSGGRALDQLRPIRITRHYTMHAEGAVLIEFGNTRVLCTASVEEKVPPHKRGSGEGWVTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR+V DL ALG R I IDCDVIQA
Sbjct: 68  EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTIQIDCDVIQA 127

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGAWVA  D +  +         +  L G VAA+S G++ G P++DL+Y E
Sbjct: 128 DGGTRTAAITGAWVAAQDAVNTLLAAGKI--SASPLTGAVAAVSVGIVQGQPLLDLEYVE 185

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   D D N VMT +GH VEVQG+AE A FS+     +L LA+  IA+L+ LQ+  + N
Sbjct: 186 DVACDTDMNVVMTGTGHYVEVQGTAEGAAFSRQEMDQLLALAEKGIAELVALQRQSLRN 244


>gi|332141636|ref|YP_004427374.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype']
 gi|332143438|ref|YP_004429176.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype']
 gi|226736881|sp|B4S201|RNPH_ALTMD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|327551658|gb|AEA98376.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553460|gb|AEB00179.1| ribonuclease PH [Alteromonas macleodii str. 'Deep ecotype']
          Length = 237

 Score =  346 bits (889), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 117/239 (48%), Positives = 162/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R +++TR+ + +AEGS LV+FG+T +L  AT+EE VP +++    GW+T
Sbjct: 1   MRPSGRTASQIRPVTITRQYTCHAEGSVLVEFGNTKVLCNATVEEGVPRFMKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+QGGR+ EIQR+I R+LR+ +DL  LG   I +DCDVIQ
Sbjct: 61  AEYSMLPRATHTRSGREAARGKQGGRTLEIQRLIARSLRAALDLKLLGENTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L +M   S     +  LK  +AA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALTYMR--SKGIIKTNPLKHMIAALSVGIYEGTPIADLEYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G ++EVQG+AE   FS +    +L + K  + +L  +QK  ++
Sbjct: 179 EDSEAETDMNIVMTETGKLIEVQGTAEGEPFSFEELDELLKIGKHGLRELFDIQKAALA 237


>gi|148653988|ref|YP_001281081.1| ribonuclease PH [Psychrobacter sp. PRwf-1]
 gi|172048586|sp|A5WHJ0|RNPH_PSYWF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|148573072|gb|ABQ95131.1| RNAse PH [Psychrobacter sp. PRwf-1]
          Length = 238

 Score =  346 bits (889), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R+ +Q+R ++  R  +K+AEGS LV FGDT +L TA++E  VP W++    GW+T
Sbjct: 1   MRIDNRELDQLRTVTFERNYTKHAEGSVLVCFGDTKVLCTASVEAGVPRWLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA  G+Q GR+QEIQR+IGR+LR++VDL+ LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMVDLTKLGENTIYLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +AL D L+ ++    K   +  L G VAA+S G+  G  ++DL+Y 
Sbjct: 121 ADGGTRTASITGAAIALIDALEVLQQ--KKKLKADPLIGLVAAVSVGVKNGEVLLDLNYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS+ D D N VMT  G  +E+QG+AE   F++     ML +A+  IADL+KLQ+  + 
Sbjct: 179 EDSSCDTDLNVVMTQKGEFIEIQGTAEEKPFTRAEADKMLAMAEKGIADLVKLQQTALG 237


>gi|262370973|ref|ZP_06064296.1| ribonuclease PH [Acinetobacter johnsonii SH046]
 gi|262314049|gb|EEY95093.1| ribonuclease PH [Acinetobacter johnsonii SH046]
          Length = 238

 Score =  346 bits (889), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 161/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R  +Q+R++++TR  ++YAEGS LV+FG T +L TA+++  VP +++    GW+T
Sbjct: 1   MRIDQRTLDQLRDVTITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR++VDL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D +  + +   K      LKG VAAIS G+     ++DL Y 
Sbjct: 121 ADGGTRTAAITGAAVALIDAMNTLLE--KKKIKQDPLKGLVAAISVGIFQDEVLLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N VMT +G  +E+QG+AE   F++    AML +A+  I +L+K Q+  + 
Sbjct: 179 EDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRVQCNAMLEMAEKGIQELVKKQQQALG 237


>gi|262392601|ref|YP_003284455.1| ribonuclease PH [Vibrio sp. Ex25]
 gi|262336195|gb|ACY49990.1| ribonuclease PH [Vibrio sp. Ex25]
          Length = 238

 Score =  346 bits (889), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 123/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ D       +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKL--KANPMKGHVAAVSVGLLGDDVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +   A+L  AK  I +++  QK  ++N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKIGITEIVAAQKAALAN 238


>gi|91791686|ref|YP_561337.1| ribonuclease PH [Shewanella denitrificans OS217]
 gi|123357198|sp|Q12SG2|RNPH_SHEDO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|91713688|gb|ABE53614.1| RNAse PH [Shewanella denitrificans OS217]
          Length = 237

 Score =  346 bits (889), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q R I++TR  + +AEGS LV+FG+T +L TA+  E VP +++    GW+T
Sbjct: 1   MRPSKRTPAQTRPITITRNFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+Q GR+QEIQR+IGR+LR+ VD+ ALG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VA+ D L      +     S  LK  +AA+S G+  G  I DL+Y 
Sbjct: 121 ADGGTRTAAITGACVAMVDALNWAR--AKNIIKSNPLKFLIAAVSVGIYKGEAISDLEYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G I+EVQG+AE   FS +    +L LAK+ I +++ +QK  ++
Sbjct: 179 EDSAAETDMNVVMTETGKIIEVQGTAEGEPFSHEELNELLGLAKNSIREIVDVQKSALN 237


>gi|46201192|ref|ZP_00055593.2| COG0689: RNase PH [Magnetospirillum magnetotacticum MS-1]
          Length = 239

 Score =  346 bits (889), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 135/239 (56%), Positives = 170/239 (71%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R + L   VS++AEGSC+ KFGDTH+L TA++EEKVP ++RNT  GW+T
Sbjct: 1   MRPSGRAPDQLRTVILETGVSRHAEGSCIAKFGDTHVLCTASVEEKVPPFLRNTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+ EIQR+IGR+LRSV DL A+G RQI IDCDV+Q
Sbjct: 61  AEYGMLPRSTHTRTDREAAKGKQSGRTHEIQRLIGRSLRSVTDLVAMGERQIKIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VALH   Q +         +  L  HVAAISCG+  G  ++DLDY 
Sbjct: 121 ADGGTRTASITGAFVALHLAFQRLVRLE--LLKAIPLTDHVAAISCGIYEGTAVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    DANFVMT +G IVE+QG+AE   FS+  F  + +LA+  I  L++ QK  + 
Sbjct: 179 EDSNAQADANFVMTGNGGIVEIQGTAEERPFSRAQFLELTDLAEAGIRQLVEAQKKALG 237


>gi|326797277|ref|YP_004315097.1| ribonuclease PH [Marinomonas mediterranea MMB-1]
 gi|326548041|gb|ADZ93261.1| Ribonuclease PH [Marinomonas mediterranea MMB-1]
          Length = 241

 Score =  346 bits (889), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 114/238 (47%), Positives = 163/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R +  TR  +K+AEGS L++ GDT ++ TAT+   VP +++    GWIT
Sbjct: 1   MRPSGRAADQLRPMKFTRNFTKHAEGSVLIECGDTKVICTATVVSGVPRFLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+IGR+LR+ +DL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMDREAARGKQGGRTVEIQRLIGRSLRAAIDLKKLGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+G +VAL D ++ + +   K      +   +AAIS G+  G P++DLDY 
Sbjct: 121 ADGGTRTASISGGFVALADAVKTLVE--QKKLKENPIVSQIAAISVGVYKGTPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N +M D G  +E+QG+AE A F  +    ML++A+  I +++++Q+ V+
Sbjct: 179 EDSNAETDMNVIMNDKGGFIEIQGTAEGAAFGDEQMMGMLSVARKGINEIMEMQRQVL 236


>gi|307329928|ref|ZP_07609081.1| ribonuclease PH [Streptomyces violaceusniger Tu 4113]
 gi|306884419|gb|EFN15452.1| ribonuclease PH [Streptomyces violaceusniger Tu 4113]
          Length = 243

 Score =  346 bits (889), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 114/241 (47%), Positives = 157/241 (65%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R +++ R  SK+AEGS LV FGDT +L TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPDQLRPVTIERGWSKHAEGSVLVSFGDTRVLCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  RE+V G+ GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYAMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +             Q L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAIGWARGKKLIKATRQPLTGTVSAVSVGIVGGIPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D   + D N V T  G  VEVQG+AE   F+++    +L+LA      L  +Q+  ++ E
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGEPFAREELNGLLDLAVAGCETLAGIQRAALALE 242

Query: 242 V 242
           +
Sbjct: 243 M 243


>gi|56707964|ref|YP_169860.1| ribonuclease PH [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670435|ref|YP_666992.1| ribonuclease PH [Francisella tularensis subsp. tularensis FSC198]
 gi|134302244|ref|YP_001122213.1| ribonuclease PH [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|208780450|ref|ZP_03247790.1| ribonuclease PH [Francisella novicida FTG]
 gi|224457045|ref|ZP_03665518.1| ribonuclease PH [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370452|ref|ZP_04986457.1| ribonuclease PH [Francisella tularensis subsp. tularensis FSC033]
 gi|254372353|ref|ZP_04987844.1| tRNA nucleotidyltransferase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254874766|ref|ZP_05247476.1| ribonuclease PH [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|61215787|sp|Q5NGI2|RNPH_FRATT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123169418|sp|Q14HY4|RNPH_FRAT1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228282|sp|A4IYU1|RNPH_FRATW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|54112559|gb|AAV28913.1| NT02FT0689 [synthetic construct]
 gi|56604456|emb|CAG45491.1| Ribonuclease PH [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320768|emb|CAL08874.1| Ribonuclease PH [Francisella tularensis subsp. tularensis FSC198]
 gi|134050021|gb|ABO47092.1| ribonuclease PH [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|151568695|gb|EDN34349.1| ribonuclease PH [Francisella tularensis subsp. tularensis FSC033]
 gi|151570082|gb|EDN35736.1| tRNA nucleotidyltransferase [Francisella novicida GA99-3549]
 gi|208743596|gb|EDZ89900.1| ribonuclease PH [Francisella novicida FTG]
 gi|254840765|gb|EET19201.1| ribonuclease PH [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159150|gb|ADA78541.1| ribonuclease PH [Francisella tularensis subsp. tularensis NE061598]
          Length = 235

 Score =  346 bits (889), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 116/232 (50%), Positives = 162/232 (69%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R + +T   +K+AEGS L++FGDT ++ TA++   VP + +++  GW+T
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGRALR+ VDL+A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +A+ D +++M+      + +  L   VAAIS G+    P++DLDY 
Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           EDS  + D N VM  +G I+E+QG+AE   FS++ F  ML LAK  I ++  
Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 232


>gi|152979839|ref|YP_001353022.1| ribonuclease PH [Janthinobacterium sp. Marseille]
 gi|151279916|gb|ABR88326.1| ribonuclease PH [Janthinobacterium sp. Marseille]
          Length = 244

 Score =  346 bits (889), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 125/238 (52%), Positives = 165/238 (69%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  + +R I LTR  +K+AEGS L++ GDT ++ TA++E++VP +++    GW+TA
Sbjct: 6   RPSGRAADALRAIKLTRNYTKHAEGSVLIECGDTKVICTASIEDRVPGFLKGKGQGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R+ REA  G+Q GR+QEIQR+IGR+LR+  DL A G R + +DCDVIQA
Sbjct: 66  EYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRSLRAAFDLQAFGERTLHLDCDVIQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITG  VA +D    +   +     +  LK  VAAIS G+  G P++DLDY E
Sbjct: 126 DGGTRTAAITGTMVAAYDAFSKL--VAQNVIPAIPLKHFVAAISVGVYKGQPVLDLDYDE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMTD+GH +EVQG+AE A F +     +L+LA+D I DLI LQK  ++
Sbjct: 184 DSDCDTDMNIVMTDAGHFIEVQGTAEGAAFDRATMDKLLDLAQDGIRDLIVLQKQALA 241


>gi|254252975|ref|ZP_04946293.1| RNase PH [Burkholderia dolosa AUO158]
 gi|124895584|gb|EAY69464.1| RNase PH [Burkholderia dolosa AUO158]
          Length = 246

 Score =  346 bits (889), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 130/238 (54%), Positives = 172/238 (72%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ +++R+++LTR  +K+AEGS LV+FGDT ++ TA++ E+VP ++R+   GW+TA
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPDFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDV QA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHIDCDVTQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +       +    +  HVAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSTLIAAGKLVR--SPITDHVAAISVGVYEGVPVLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMT +G  VEVQG+AE A FS+    A+L+LA+  I  L++LQKDV+ 
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGAPFSRAEMNALLDLAQSGIGRLVQLQKDVLG 242


>gi|182438431|ref|YP_001826150.1| ribonuclease PH [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|226736942|sp|B1VVV6|RNPH_STRGG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|178466947|dbj|BAG21467.1| putative ribonuclease PH [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 245

 Score =  346 bits (889), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 117/237 (49%), Positives = 154/237 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS L+ FGDT +  TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  REAV G+ GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDCKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L   VAAIS G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   + D N V T  G  VEVQG+AE A F +    A+L+LA     DL  LQ+D +
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRKELGALLDLATAGCVDLAALQRDAL 239


>gi|315121831|ref|YP_004062320.1| ribonuclease PH [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495233|gb|ADR51832.1| ribonuclease PH [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 250

 Score =  346 bits (889), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 202/240 (84%), Positives = 228/240 (95%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MRL GR+ENQMREIS TR +SK+AEGSCLVKFG+THLLTTATLEEKVP+W+RNTK+GWIT
Sbjct: 3   MRLLGRKENQMREISFTRGISKHAEGSCLVKFGETHLLTTATLEEKVPIWLRNTKNGWIT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R+KREAVSGRQGGR+QEIQR+IGR+LRS+VDLSALG RQIIIDCDVIQ
Sbjct: 63  AEYGMLPRSTGSRIKREAVSGRQGGRTQEIQRLIGRSLRSIVDLSALGPRQIIIDCDVIQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAW+ALHDCLQHMED ++KFQLSQVLKGHVAAISCG+L G PIVDL+Y 
Sbjct: 123 ADGGTRTAAITGAWIALHDCLQHMEDRNSKFQLSQVLKGHVAAISCGILSGNPIVDLNYE 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS+ID DANFVMTD+G+IVE+Q SAE+ATFSQD FF+MLNLAKDRI+DLI+LQKDVIS 
Sbjct: 183 EDSSIDADANFVMTDAGNIVEIQVSAEKATFSQDQFFSMLNLAKDRISDLIRLQKDVISG 242


>gi|238026484|ref|YP_002910715.1| ribonuclease PH [Burkholderia glumae BGR1]
 gi|237875678|gb|ACR28011.1| Ribonuclease PH [Burkholderia glumae BGR1]
          Length = 243

 Score =  346 bits (889), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 130/236 (55%), Positives = 170/236 (72%), Gaps = 2/236 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGRQ +Q+RE+ LTR  +K+AEGS LV+FGDT ++ TA++ E+VP ++R+   GW+TA
Sbjct: 7   RPSGRQADQLREVRLTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+VVDL  LG R I IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVVDLEHLGPRTIHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA+ D +  +   ++       +   VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAVQDAVAKL--VADGKLPRSPISDSVAAISVGVYQGTPLLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           DS  D D N VMT +G +VEVQG+AE A F++    A+L+LA+  I +LI LQK  
Sbjct: 185 DSRCDTDMNVVMTGAGGLVEVQGTAEGAPFTRAEMDALLDLAQKGIGELIALQKAA 240


>gi|145637126|ref|ZP_01792788.1| ribonuclease PH [Haemophilus influenzae PittHH]
 gi|145640205|ref|ZP_01795789.1| ribonuclease PH [Haemophilus influenzae R3021]
 gi|148825447|ref|YP_001290200.1| ribonuclease PH [Haemophilus influenzae PittEE]
 gi|229846361|ref|ZP_04466469.1| ribonuclease PH [Haemophilus influenzae 7P49H1]
 gi|166228284|sp|A5UAL6|RNPH_HAEIE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145269571|gb|EDK09512.1| ribonuclease PH [Haemophilus influenzae PittHH]
 gi|145274791|gb|EDK14653.1| ribonuclease PH [Haemophilus influenzae 22.4-21]
 gi|148715607|gb|ABQ97817.1| ribonuclease PH [Haemophilus influenzae PittEE]
 gi|229810454|gb|EEP46172.1| ribonuclease PH [Haemophilus influenzae 7P49H1]
 gi|309972566|gb|ADO95767.1| Ribonuclease PH [Haemophilus influenzae R2846]
          Length = 238

 Score =  346 bits (889), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ R+I +TR  +K+AEGS LV+FGDT +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  + +  N    +  +KG V+AIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALCDAINSLIE--NGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK     +   Q++ + 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREALG 237


>gi|257454134|ref|ZP_05619407.1| ribonuclease PH [Enhydrobacter aerosaccus SK60]
 gi|257448462|gb|EEV23432.1| ribonuclease PH [Enhydrobacter aerosaccus SK60]
          Length = 238

 Score =  346 bits (889), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 121/239 (50%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R+ NQ+R +S  R  +K+AEG+ LV +GDT +L TA++E +VP W++ T  GWIT
Sbjct: 1   MRIDNRENNQLRPMSFVRNFTKHAEGAVLVSYGDTKVLCTASIETQVPRWLKGTGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA  G+Q GR+QEIQR+IGR+LR++VDL  LG   I IDCDV+Q
Sbjct: 61  AEYGMLPRATHERTQREAAKGKQSGRTQEIQRLIGRSLRAMVDLEKLGENTIHIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L+ ++  + K   +  L G VAA+S G+  G  ++DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALVDALEKLQ--AAKKLKADPLVGLVAAVSVGIKNGEVLLDLNYS 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS+ D D N VMT  G  +E+QG+AE   F++     ML +A++ I  LI  Q+ V+ 
Sbjct: 179 EDSSCDTDLNVVMTQKGEFIEIQGTAEEKPFTRAQADEMLAIAEEGIKQLIAEQQAVLG 237


>gi|153837893|ref|ZP_01990560.1| ribonuclease PH [Vibrio parahaemolyticus AQ3810]
 gi|260902523|ref|ZP_05910918.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AQ4037]
 gi|149748756|gb|EDM59601.1| ribonuclease PH [Vibrio parahaemolyticus AQ3810]
 gi|308109638|gb|EFO47178.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AQ4037]
          Length = 238

 Score =  346 bits (889), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ D       +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKL--KANPMKGHVAAVSVGLLGDEVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +   A+L  AK  I +++  QK  ++N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 238


>gi|89255778|ref|YP_513140.1| ribonuclease PH [Francisella tularensis subsp. holarctica LVS]
 gi|115314270|ref|YP_762993.1| tRNA nucleotidyltransferase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156501746|ref|YP_001427811.1| ribonuclease PH [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167009694|ref|ZP_02274625.1| ribonuclease PH [Francisella tularensis subsp. holarctica FSC200]
 gi|254367139|ref|ZP_04983171.1| ribonuclease PH [Francisella tularensis subsp. holarctica 257]
 gi|290954430|ref|ZP_06559051.1| ribonuclease PH [Francisella tularensis subsp. holarctica URFT1]
 gi|295312131|ref|ZP_06802940.1| ribonuclease PH [Francisella tularensis subsp. holarctica URFT1]
 gi|122325696|sp|Q0BNH8|RNPH_FRATO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|122501188|sp|Q2A562|RNPH_FRATH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228280|sp|A7NA52|RNPH_FRATF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|89143609|emb|CAJ78797.1| Ribonuclease PH [Francisella tularensis subsp. holarctica LVS]
 gi|115129169|gb|ABI82356.1| tRNA nucleotidyltransferase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134252961|gb|EBA52055.1| ribonuclease PH [Francisella tularensis subsp. holarctica 257]
 gi|156252349|gb|ABU60855.1| ribonuclease PH [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 235

 Score =  346 bits (889), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 116/232 (50%), Positives = 162/232 (69%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R + +T   +K+AEGS L++FGDT ++ TA++   VP + +++  GW+T
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGRALR+ VDL+A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +A+ D +++M+      + +  L   VAAIS G+    P++DLDY 
Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGILDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           EDS  + D N VM  +G I+E+QG+AE   FS++ F  ML LAK  I ++  
Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 232


>gi|220936120|ref|YP_002515019.1| ribonuclease PH [Thioalkalivibrio sp. HL-EbGR7]
 gi|254808601|sp|B8GPB2|RNPH_THISH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|219997430|gb|ACL74032.1| ribonuclease PH [Thioalkalivibrio sp. HL-EbGR7]
          Length = 239

 Score =  346 bits (889), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 128/240 (53%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ +Q+REI  TRR +K+AEGS LV+FGDT +L TA+++++ P W+RN   GW+T
Sbjct: 1   MRPSGRQPDQLREIRFTRRFTKHAEGSVLVEFGDTRVLCTASVDDRTPPWLRNKGSGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+QGGR+QEIQR+IGR+LR+ VDL  LG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRSTHERMAREAARGKQGGRTQEIQRLIGRSLRAAVDLEGLGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+G +VALHD + H+            L G VA++S G+  G P++DLDY 
Sbjct: 121 ADGGTRTASISGGYVALHDAITHLMKQGKL--KRNPLFGAVASVSVGIYQGVPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM D+   +EVQG+AE   F  D   +ML LA+  I D+I  Q+  +  
Sbjct: 179 EDSNAETDMNVVMNDANAFIEVQGTAEGHAFRMDELNSMLALAQSGIQDIIAAQRAALEQ 238


>gi|328676457|gb|AEB27327.1| Ribonuclease PH [Francisella cf. novicida Fx1]
          Length = 235

 Score =  346 bits (889), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 116/232 (50%), Positives = 161/232 (69%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R + +T   +K+AEGS L++FGDT ++ TA++   VP + +++  GW+T
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGRALR+ VDL+A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +A+ D +++M+      + +  L   VAAIS G+    P++DLDY 
Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           EDS  + D N VM   G I+E+QG+AE   FS++ F  ML LAK  I ++  
Sbjct: 181 EDSNAETDMNVVMNSKGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 232


>gi|325272059|ref|ZP_08138496.1| ribonuclease PH [Pseudomonas sp. TJI-51]
 gi|324102805|gb|EGC00215.1| ribonuclease PH [Pseudomonas sp. TJI-51]
          Length = 240

 Score =  346 bits (889), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++      +    LK  +AA+S GM  G  ++DLDY E
Sbjct: 123 DGGTRTASITGAMVALCDALAVIKKRG-GLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  + F AML LA+  + ++ +LQ+  +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMTEIFELQQAALAD 240


>gi|260579680|ref|ZP_05847543.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium ATCC 43734]
 gi|258602199|gb|EEW15513.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium ATCC 43734]
          Length = 256

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 111/241 (46%), Positives = 161/241 (66%), Gaps = 2/241 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  N++R + +TR  +    GS LV+FG+T ++ TA++EE VP + +++  GW+TA
Sbjct: 18  RADGRATNELRPVRITRGFTSNPAGSVLVEFGNTRVMCTASVEEGVPRFKKDSGEGWLTA 77

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R+ RE++ G+  GR+QEI R++GRALR+ VDL  LG   + IDCDV+QA
Sbjct: 78  EYAMLPASTHERMPRESMKGKVKGRTQEISRLVGRALRAAVDLKELGENTVNIDCDVLQA 137

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D L  ++  +      Q L+  VAA+S G++ G P +DL Y E
Sbjct: 138 DGGTRTAAITGAYVALADALAVLQ--ARGVVPGQPLRAPVAAVSVGIIDGVPCLDLPYEE 195

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  DVD N  MT  G  VE+QG+ E A F+++    +L+LA+  + +LI+ Q+  ++ E
Sbjct: 196 DSRADVDMNVAMTAEGRFVEIQGTGENAEFTREELNTLLDLAEGGLRELIEAQRAALAQE 255

Query: 242 V 242
           +
Sbjct: 256 L 256


>gi|162139697|ref|YP_610833.2| ribonuclease PH [Pseudomonas entomophila L48]
          Length = 240

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++      +    LK  +AA+S GM  G  ++DLDY E
Sbjct: 123 DGGTRTASITGAMVALCDALAVIKKRG-GLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  + F AML LA+  + ++ +LQ+  +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMGEIFELQQAALAD 240


>gi|261213164|ref|ZP_05927447.1| ribonuclease PH [Vibrio sp. RC341]
 gi|260837582|gb|EEX64276.1| ribonuclease PH [Vibrio sp. RC341]
          Length = 238

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 1   MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D   H+       +    +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASITGASVALADAFAHLMAKGQLKK--NPMKGHVAAVSVGILGEDVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK  + +
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASLLD 238


>gi|167854865|ref|ZP_02477642.1| ribonuclease PH [Haemophilus parasuis 29755]
 gi|167854044|gb|EDS25281.1| ribonuclease PH [Haemophilus parasuis 29755]
          Length = 244

 Score =  346 bits (888), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q R + +TR  ++YAEGS LV+FG+T +L  AT+EE VP +++  + GW+T
Sbjct: 1   MRPNNRPVDQTRPVKITRNYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+QGGR+ EIQR+I R+LR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VALHD +  +   ++       +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALHDAINKL--IADGLLKENPMKGLVAAISVGIVDGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G +VEVQG+AE   FS      +L+LA+  I  L + Q+  ++
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAQKGIEQLFEAQRQALN 237


>gi|258625880|ref|ZP_05720755.1| ribonuclease PH [Vibrio mimicus VM603]
 gi|258581844|gb|EEW06718.1| ribonuclease PH [Vibrio mimicus VM603]
          Length = 238

 Score =  346 bits (888), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 1   MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D   H+       +    +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASITGASVALADAFAHLMAKGQLKK--NPMKGHVAAVSVGILGEDVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK  + +
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASLLD 238


>gi|299133261|ref|ZP_07026456.1| ribonuclease PH [Afipia sp. 1NLS2]
 gi|298593398|gb|EFI53598.1| ribonuclease PH [Afipia sp. 1NLS2]
          Length = 238

 Score =  346 bits (888), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 145/239 (60%), Positives = 185/239 (77%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +++R +SL R V KYAEGSC+VKFGDTH+L TATLEE++P W++    GW+T
Sbjct: 1   MRPSGRAPDELRPVSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +RV+REA +G+Q GR+ EIQR+IGR+LR+ VDL ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATHDRVRREASAGKQSGRTVEIQRLIGRSLRTTVDLVALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DCLQ M+   N  +   VL+ +VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALADCLQWMK-ARNMLKNDNVLRDNVAAISCGIHNGTPVLDLDYA 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFVMT  G +VEVQG+AER  FSQD F  ++ LA+  +  L++LQK  ++
Sbjct: 180 EDSEAETDANFVMTGDGRLVEVQGTAERTPFSQDEFLKLMALAQSGVGRLVELQKIAMA 238


>gi|219871463|ref|YP_002475838.1| ribonuclease PH [Haemophilus parasuis SH0165]
 gi|254808589|sp|B8F6D8|RNPH_HAEPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|219691667|gb|ACL32890.1| ribonuclease PH [Haemophilus parasuis SH0165]
          Length = 244

 Score =  346 bits (888), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q R + +TR  ++YAEGS LV+FG+T +L  AT+EE VP +++  + GW+T
Sbjct: 1   MRPNNRPVDQTRPVKITRNYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+QGGR+ EIQR+I R+LR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VALHD +  +   ++       +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALHDAINKL--IADGLLKENPMKGLVAAISVGIVDGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G +VEVQG+AE   FS      +L+LA+  I  L + Q+  ++
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAQKGIEQLFEAQRQALN 237


>gi|305681138|ref|ZP_07403945.1| tRNA nucleotidyltransferase [Corynebacterium matruchotii ATCC
           14266]
 gi|305659343|gb|EFM48843.1| tRNA nucleotidyltransferase [Corynebacterium matruchotii ATCC
           14266]
          Length = 242

 Score =  346 bits (888), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 103/239 (43%), Positives = 155/239 (64%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R I +TR  +    GS L+++G+T ++ TA+ E+ VP + +++  GW+TA
Sbjct: 6   RADGRAPDQLRPIRITRGFTTNPAGSVLIEYGNTRVMCTASAEQGVPRFKKDSGEGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R+ RE++ G+  GR+ EI R++GR+LR+ +DL+ LG   I IDCDV+QA
Sbjct: 66  EYAMLPAATHERMPRESMRGKVKGRTHEISRLVGRSLRAAIDLTLLGENTINIDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA++AL D + ++   +        L   +AA+S G++ G+  +DL Y E
Sbjct: 126 DGGTRTASITGAYIALADAIAYL--TAQGVVPGNPLLPPIAAVSVGIIDGHVCLDLPYEE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  DVD N +MT  G  VE+QG+AE  TFS+D   AML+ A+    +LI+ Q   +  
Sbjct: 184 DSRADVDLNVIMTQEGKFVEIQGTAEHNTFSRDELNAMLDYAEKGCKELIEAQLASLGK 242


>gi|323527036|ref|YP_004229189.1| ribonuclease PH [Burkholderia sp. CCGE1001]
 gi|323384038|gb|ADX56129.1| ribonuclease PH [Burkholderia sp. CCGE1001]
          Length = 246

 Score =  346 bits (888), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 127/238 (53%), Positives = 164/238 (68%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R++ +TR  +K+AEGS LV+FGDT ++ TA++ E VP ++R+   GW+TA
Sbjct: 7   RPSGRLADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAETVPSFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALRSV DL  LG+R + IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +         S  +   VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLLAAGRI--ESSPISDFVAAISVGVYDGVPVLDLDYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMT +G  VE+QG+AE   FS+D   A+L+LA   IA L   QK  + 
Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMNALLDLASSGIATLTAKQKAALE 242


>gi|161582033|ref|NP_229867.2| ribonuclease PH [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|254851339|ref|ZP_05240689.1| ribonuclease PH [Vibrio cholerae MO10]
 gi|255744021|ref|ZP_05417975.1| ribonuclease PH [Vibrio cholera CIRS 101]
 gi|262153620|ref|ZP_06028747.1| ribonuclease PH [Vibrio cholerae INDRE 91/1]
 gi|21759419|sp|Q9KVD6|RNPH_VIBCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254847044|gb|EET25458.1| ribonuclease PH [Vibrio cholerae MO10]
 gi|255738286|gb|EET93677.1| ribonuclease PH [Vibrio cholera CIRS 101]
 gi|262030561|gb|EEY49198.1| ribonuclease PH [Vibrio cholerae INDRE 91/1]
 gi|327483090|gb|AEA77497.1| Ribonuclease PH [Vibrio cholerae LMA3894-4]
          Length = 238

 Score =  346 bits (888), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 1   MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D   H+   +        +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASITGASVALADAFAHL--IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK  + +
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASLLD 238


>gi|148264306|ref|YP_001231012.1| ribonuclease PH [Geobacter uraniireducens Rf4]
 gi|189043764|sp|A5G3S1|RNPH_GEOUR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|146397806|gb|ABQ26439.1| RNAse PH [Geobacter uraniireducens Rf4]
          Length = 238

 Score =  346 bits (888), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 119/238 (50%), Positives = 165/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR    +RE+ +TR   K+AEGS L++FGDT ++ TA++E  VP ++R    GW+T
Sbjct: 1   MRFDGRGAESLREVKITRNYLKHAEGSVLIEFGDTKVICTASVEGSVPPFLRGKGTGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+ GGR+ EIQR+IGR+LR+V+D++ LG R ++IDCDVIQ
Sbjct: 61  AEYSMLPRATHTRSHRESSKGKVGGRTHEIQRLIGRSLRAVMDMNLLGERSVLIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL+D L  +        +   LK  VAA+S G++ G P++DL+Y 
Sbjct: 121 ADGGTRTASITGAYVALYDALDGLVKKGELAAM--PLKEAVAAVSVGIVDGTPLLDLNYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS+ +VD NFVMT S   VEVQG+AE   F+ +   AM +LA   I  L ++QK+ +
Sbjct: 179 EDSSAEVDMNFVMTSSNRFVEVQGTAEAEPFTVEQMDAMRDLAISGIKRLFQIQKEAL 236


>gi|301382581|ref|ZP_07230999.1| ribonuclease PH [Pseudomonas syringae pv. tomato Max13]
 gi|302063052|ref|ZP_07254593.1| ribonuclease PH [Pseudomonas syringae pv. tomato K40]
 gi|302133600|ref|ZP_07259590.1| ribonuclease PH [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 240

 Score =  346 bits (888), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 164/239 (68%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  +       +    LK  +AA S GM  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALADAL-KVIKKRGGLKGGDPLKQMIAAASVGMYQGEPVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  +   AML LA+  + +L ++Q+  +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEMQRAALAD 240


>gi|262190382|ref|ZP_06048643.1| ribonuclease PH [Vibrio cholerae CT 5369-93]
 gi|262033743|gb|EEY52222.1| ribonuclease PH [Vibrio cholerae CT 5369-93]
          Length = 238

 Score =  346 bits (888), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 1   MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D   H+   +        +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASITGASVALADAFAHL--IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK  + +
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLTVAKKGIADIVAVQKASLLD 238


>gi|261867317|ref|YP_003255239.1| ribonuclease PH [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412649|gb|ACX82020.1| ribonuclease PH [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 238

 Score =  346 bits (888), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q R I +TR  +K+AEGS LV+FGDT +L TA++EE VP +++    GW+T
Sbjct: 1   MRPNQRANHQPRPIQITRHYTKHAEGSVLVEFGDTKVLCTASVEESVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   +N       LKG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALCDALNSL--VTNGTLAKNPLKGLVAAISVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK     + + Q+  ++ 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGKPFSHEELLTLLDLAKQGCDMIFQTQRATLAE 238


>gi|183597211|ref|ZP_02958704.1| hypothetical protein PROSTU_00454 [Providencia stuartii ATCC 25827]
 gi|188023525|gb|EDU61565.1| hypothetical protein PROSTU_00454 [Providencia stuartii ATCC 25827]
          Length = 237

 Score =  346 bits (888), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR  +QMR I ++R  +K+AEGS L++FGDT +L  AT+EE VP +++    GW+T
Sbjct: 1   MRPEGRMADQMRPIKISRNYTKHAEGSVLIEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+Q GR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATNSRNQREAAKGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+GA VAL D L  M +     Q    LK  VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTAAISGACVALVDALNKMVEQGKLAQ--SPLKSMVAAVSVGIVDGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM D G ++EVQG+AE   FS D   ++L LAK  +  + + Q++ + 
Sbjct: 179 EDSAAETDMNVVMMDDGRMIEVQGTAEGEPFSHDELLSLLALAKTGLGSIFEAQREALK 237


>gi|319775856|ref|YP_004138344.1| ribonuclease PH [Haemophilus influenzae F3047]
 gi|329123701|ref|ZP_08252261.1| tRNA nucleotidyltransferase [Haemophilus aegyptius ATCC 11116]
 gi|317450447|emb|CBY86663.1| ribonuclease PH [Haemophilus influenzae F3047]
 gi|327469900|gb|EGF15365.1| tRNA nucleotidyltransferase [Haemophilus aegyptius ATCC 11116]
          Length = 238

 Score =  346 bits (888), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ R+I +TR  +K+AEGS LV+FGDT +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+Q GR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  + +  N    +  +KG V+AIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALCDAINGLIE--NGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK     +   Q++ + 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREALG 237


>gi|145635181|ref|ZP_01790886.1| ribonuclease PH [Haemophilus influenzae PittAA]
 gi|145267602|gb|EDK07601.1| ribonuclease PH [Haemophilus influenzae PittAA]
          Length = 238

 Score =  346 bits (888), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ R+I +TR  +K+AEGS LV+FGDT +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+Q GR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  + +  N    +  +KG V+AIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALCDAINSLIE--NGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK     +   Q++V+ 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREVLG 237


>gi|71066420|ref|YP_265147.1| ribonuclease PH [Psychrobacter arcticus 273-4]
 gi|123647900|sp|Q4FQJ5|RNPH_PSYA2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|71039405|gb|AAZ19713.1| RNAse PH [Psychrobacter arcticus 273-4]
          Length = 238

 Score =  346 bits (888), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 164/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R+ NQ+R IS  R  +K+AEGS LV FGDT +L TA++E  VP W++    GWIT
Sbjct: 1   MRIDNRELNQLRSISFERHYTKHAEGSVLVSFGDTKVLCTASVESGVPRWLKGKGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA  G+Q GR+QEIQR+IGR+LR+++DLS LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMIDLSKLGENTIYLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA +AL D L+ ++    K   +  L G VAA+S GM  G   +DL+Y 
Sbjct: 121 ADGGTRTASVTGAAIALIDALESIQK--TKKLKADPLIGLVAAVSVGMKDGEAYLDLNYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED++ D D N VMT  G  +E+QG+AE   F++     ML LA+  IA+LI +QK  + 
Sbjct: 179 EDASCDTDLNVVMTQKGEFIELQGTAEEKPFTRAQADDMLVLAEKGIAELIAMQKTALG 237


>gi|300714644|ref|YP_003739447.1| ribonuclease PH [Erwinia billingiae Eb661]
 gi|299060480|emb|CAX57587.1| Ribonuclease PH [Erwinia billingiae Eb661]
          Length = 238

 Score =  346 bits (888), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 124/240 (51%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GW+T
Sbjct: 1   MRPAGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATIEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ +DL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAALDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L H+         +  +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNHLVSIGKL--KTNPMKGMVAAISVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G ++EVQG+AE   FS D    +L LA+  I  LI  QK  + +
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLQLLALARGGIDSLILAQKAALKD 238


>gi|68535568|ref|YP_250273.1| ribonuclease PH [Corynebacterium jeikeium K411]
 gi|68263167|emb|CAI36655.1| ribonuclease PH [Corynebacterium jeikeium K411]
          Length = 256

 Score =  346 bits (888), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 110/241 (45%), Positives = 161/241 (66%), Gaps = 2/241 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R + +TR  +    GS LV+FG+T ++ TA++EE VP + +++  GW+TA
Sbjct: 18  RADGRATDELRPVRITRGFTSNPAGSVLVEFGNTRVMCTASVEEGVPRFKKDSGEGWLTA 77

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R+ RE++ G+  GR+QEI R++GRALR+ VDL  LG   + IDCDV+QA
Sbjct: 78  EYAMLPASTHERMPRESMKGKVKGRTQEISRLVGRALRAAVDLKELGENTVNIDCDVLQA 137

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D L  ++  +      Q L+  VAA+S G++ G P +DL Y E
Sbjct: 138 DGGTRTAAITGAYVALADALAVLQ--ARGVVPGQPLRAPVAAVSVGIIDGVPCLDLPYEE 195

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  DVD N  MT  G  VE+QG+ E A F+++    +L+LA+  + +LI+ Q+  ++ E
Sbjct: 196 DSRADVDMNVAMTAEGRFVEIQGTGENAEFTREELNTLLDLAEGGLRELIEAQRAALAQE 255

Query: 242 V 242
           +
Sbjct: 256 L 256


>gi|70733342|ref|YP_263117.1| ribonuclease PH [Pseudomonas fluorescens Pf-5]
 gi|123652029|sp|Q4K3R6|RNPH_PSEF5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|68347641|gb|AAY95247.1| ribonuclease PH [Pseudomonas fluorescens Pf-5]
          Length = 240

 Score =  345 bits (887), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 164/239 (68%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  +       +    LK  +AA+S GM  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALVDAL-KVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F      AML LA+  + ++ +LQ+  +++
Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPAELNAMLALAQQGMNEIFQLQQAALAD 240


>gi|88861108|ref|ZP_01135742.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas tunicata
           D2]
 gi|88816830|gb|EAR26651.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas tunicata
           D2]
          Length = 237

 Score =  345 bits (887), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 124/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  NQ+R ++ TR  + +AEGS LV+FG+T +L TAT+E  VP +++    GWIT
Sbjct: 1   MRPSERTLNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVEAGVPRFMKGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+ EIQR+I R+LR+ VDL ALG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHTRCDREAARGKQSGRTMEIQRLIARSLRAAVDLKALGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L HM   +     +  LK  +AAIS G+  G PI DL+Y 
Sbjct: 121 ADGGTRTASISGACVALVDALTHMR--AKGMINTNPLKYMIAAISVGIYKGEPITDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N +MT++G ++EVQG+AE   FS +    +L LAK  I ++I +QK  ++
Sbjct: 179 EDSAAETDMNVIMTETGKLIEVQGTAEAEPFSFEELDQLLTLAKHSIREIIDIQKQTLA 237


>gi|134295025|ref|YP_001118760.1| ribonuclease PH [Burkholderia vietnamiensis G4]
 gi|166228274|sp|A4JCC2|RNPH_BURVG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|134138182|gb|ABO53925.1| RNAse PH [Burkholderia vietnamiensis G4]
          Length = 246

 Score =  345 bits (887), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 130/238 (54%), Positives = 170/238 (71%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ +++R+++LTR  +K+AEGS LV+FGDT ++ TA++ E+VP ++R    GW+TA
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVVERVPEFLRERGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R I IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTINIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +            +  HVAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSKLIAAGKL--ARSPITDHVAAISVGVYEGAPVLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMT +G  VEVQG+AE   FS+    A+L+LA+  I  L++LQKDV+ 
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQAGIGRLVQLQKDVLG 242


>gi|315635018|ref|ZP_07890299.1| tRNA nucleotidyltransferase [Aggregatibacter segnis ATCC 33393]
 gi|315476280|gb|EFU67031.1| tRNA nucleotidyltransferase [Aggregatibacter segnis ATCC 33393]
          Length = 238

 Score =  345 bits (887), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q R I +TR  +K+AEGS LV+FGDT +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNQRANHQTRPIKITRHYTKHAEGSVLVEFGDTKVLCTATVEDGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCVTLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   +N       LKG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALCDALNGL--VANGTLSKNPLKGLVAAISVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK     + + Q+  ++ 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCEVIFQTQRAALAE 238


>gi|117617491|ref|YP_858647.1| ribonuclease PH [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117558898|gb|ABK35846.1| ribonuclease PH [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 257

 Score =  345 bits (887), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 123/238 (51%), Positives = 162/238 (68%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R S R   Q+R +++TR  +K+AEGS LV+FG+T +L TA+++  VP +++    GW+TA
Sbjct: 22  RPSDRTAAQLRPVTITRHFTKHAEGSVLVEFGNTRVLCTASVDTSVPRFLKGKNQGWVTA 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST +R+ REA SG+Q GR+ EI R+I R+LR+ VDL+ALG   I +DCDV+QA
Sbjct: 82  EYGMLPRSTHSRMNREAASGKQSGRTLEISRLIARSLRAAVDLTALGEHSITVDCDVLQA 141

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA VAL D L  M +          LK  +AA+S GM  G  I DL+Y E
Sbjct: 142 DGGTRTAAITGACVALVDALNWMVE--KGMLKQSPLKQMIAAVSVGMYQGEAICDLEYIE 199

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  + D N VMT+ G I+EVQG+AE   F+ +    ML LAK  IAD+I LQK  ++
Sbjct: 200 DSAAETDMNVVMTEDGRIIEVQGTAEAEPFTHEELLEMLALAKGGIADIIALQKQSLA 257


>gi|16272231|ref|NP_438442.1| ribonuclease PH [Haemophilus influenzae Rd KW20]
 gi|68248879|ref|YP_247991.1| ribonuclease PH [Haemophilus influenzae 86-028NP]
 gi|229844976|ref|ZP_04465113.1| ribonuclease PH [Haemophilus influenzae 6P18H1]
 gi|260580844|ref|ZP_05848669.1| ribonuclease PH [Haemophilus influenzae RdAW]
 gi|319896608|ref|YP_004134801.1| ribonuclease ph [Haemophilus influenzae F3031]
 gi|1173102|sp|P44444|RNPH_HAEIN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|81336705|sp|Q4QNR6|RNPH_HAEI8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|1573239|gb|AAC21939.1| ribonuclease PH (rph) [Haemophilus influenzae Rd KW20]
 gi|68057078|gb|AAX87331.1| ribonuclease PH [Haemophilus influenzae 86-028NP]
 gi|229812110|gb|EEP47802.1| ribonuclease PH [Haemophilus influenzae 6P18H1]
 gi|260092467|gb|EEW76405.1| ribonuclease PH [Haemophilus influenzae RdAW]
 gi|317432110|emb|CBY80461.1| ribonuclease PH [Haemophilus influenzae F3031]
          Length = 238

 Score =  345 bits (887), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ R+I +TR  +K+AEGS LV+FGDT +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  + +  N    +  +KG V+AIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALCDAINGLIE--NGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK     +   Q++ + 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREALG 237


>gi|93006978|ref|YP_581415.1| ribonuclease PH [Psychrobacter cryohalolentis K5]
 gi|122414849|sp|Q1Q8S2|RNPH_PSYCK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|92394656|gb|ABE75931.1| RNAse PH [Psychrobacter cryohalolentis K5]
          Length = 238

 Score =  345 bits (887), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 164/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R+ NQ+R IS  R  +K+AEGS LV FGDT +L TA++E  VP W++    GWIT
Sbjct: 1   MRIDNRELNQLRSISFERHYTKHAEGSVLVSFGDTKVLCTASVESGVPRWLKGKGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA  G+Q GR+QEIQR+IGR+LR+++DLS LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATNTRNQREAARGKQSGRTQEIQRLIGRSLRAMIDLSKLGENTIYLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA +AL D L+ ++    K   +  L G VAA+S GM  G   +DL+Y 
Sbjct: 121 ADGGTRTASVTGAAIALIDALESIQK--TKKLKADPLIGLVAAVSVGMKDGKAYLDLNYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED++ D D N VMT  G  +E+QG+AE   F++     ML LA+  IA+LI +QK  + 
Sbjct: 179 EDASCDTDLNVVMTQKGEFIELQGTAEEKPFTRAQADDMLILAEKGIAELIAMQKTALG 237


>gi|28896951|ref|NP_796556.1| ribonuclease PH [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365861|ref|ZP_05778355.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus K5030]
 gi|260877852|ref|ZP_05890207.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AN-5034]
 gi|260895499|ref|ZP_05903995.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus Peru-466]
 gi|33301645|sp|Q87T93|RNPH_VIBPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|28805159|dbj|BAC58440.1| ribonuclease PH [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088601|gb|EFO38296.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus Peru-466]
 gi|308089812|gb|EFO39507.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AN-5034]
 gi|308113474|gb|EFO51014.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus K5030]
          Length = 238

 Score =  345 bits (887), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ D       +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKL--KANPMKGHVAAVSVGLLGDEVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +   A+L  AK  I +++  QK  ++N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 238


>gi|86146528|ref|ZP_01064850.1| ribonuclease PH [Vibrio sp. MED222]
 gi|218708240|ref|YP_002415861.1| ribonuclease PH [Vibrio splendidus LGP32]
 gi|254808602|sp|B7VHJ7|RNPH_VIBSL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|85835585|gb|EAQ53721.1| ribonuclease PH [Vibrio sp. MED222]
 gi|218321259|emb|CAV17209.1| Ribonuclease PH [Vibrio splendidus LGP32]
          Length = 238

 Score =  345 bits (887), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 118/240 (49%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA SG+QGGR+ EIQR+I R+LR+VVDL  +G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKVMGEIMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D +  +       +    +KGHVAA+S G++    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAINSLLASGKLKK--NPMKGHVAAVSVGIVGAQALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +    +L LA   IAD+++ QK  +++
Sbjct: 179 EDSAADTDMNVVMTEDGKMIEIQGTAEGEPFSHEELMQLLALANKGIADIVEAQKAALAD 238


>gi|109900580|ref|YP_663835.1| ribonuclease PH [Pseudoalteromonas atlantica T6c]
 gi|123063997|sp|Q15MV7|RNPH_PSEA6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|109702861|gb|ABG42781.1| RNAse PH [Pseudoalteromonas atlantica T6c]
          Length = 237

 Score =  345 bits (887), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 115/239 (48%), Positives = 157/239 (65%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q+R +++TR  + +AEGS L++FG+T +L  A++ E VP +++    GW+ 
Sbjct: 1   MRPNDRTASQIRPVTITRNFTCHAEGSVLIEFGNTKVLCNASVTEGVPRFMKGQGKGWVN 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+QGGR+ EIQR+I R+LR+ +DL  LG   I++DCDVIQ
Sbjct: 61  AEYSMLPRATHTRSDREAARGKQGGRTLEIQRLIARSLRAALDLKLLGENTIVVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  M   S     +  +K  +AAIS G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALTWMR--SKGIIKTNPMKHMIAAISVGIYKGNAIADLEYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMTD+G ++EVQG+AE   FS +    ML LAK  I +L   QK  ++
Sbjct: 179 EDSEAETDMNVVMTDTGKMIEVQGTAEGEPFSIEEMHEMLELAKHGIRELFDEQKAALN 237


>gi|21221351|ref|NP_627130.1| ribonuclease PH [Streptomyces coelicolor A3(2)]
 gi|256787469|ref|ZP_05525900.1| ribonuclease PH [Streptomyces lividans TK24]
 gi|289771366|ref|ZP_06530744.1| ribonuclease PH [Streptomyces lividans TK24]
 gi|21759422|sp|Q9S2H7|RNPH_STRCO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|5531353|emb|CAB50985.1| putative ribonuclease PH [Streptomyces coelicolor A3(2)]
 gi|289701565|gb|EFD68994.1| ribonuclease PH [Streptomyces lividans TK24]
          Length = 245

 Score =  345 bits (887), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 113/237 (47%), Positives = 155/237 (65%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS LV FGDT +L  A++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPQQLRPVTIERGWSKHAEGSVLVSFGDTKVLCNASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+V+D  ALG   +++DCDV+QA
Sbjct: 63  EYAMLPRATNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGRKLIKANRKPLTGTVSAVSVGIVDGTPLLDLRYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   D D N V T  G  VEVQG+AE   F++D    +L+LA     +L +LQ+  +
Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNTLLDLATAGCTELAELQRKAL 239


>gi|23501084|ref|NP_697211.1| ribonuclease PH [Brucella suis 1330]
 gi|38258602|sp|Q8G2Y5|RNPH_BRUSU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|23346953|gb|AAN29126.1| ribonuclease PH [Brucella suis 1330]
          Length = 238

 Score =  345 bits (887), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 151/239 (63%), Positives = 187/239 (78%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  ++MR IS  R VSK+AEGSCLVKFGDTH+L TA+LEEKVP W+RNT  GW+T
Sbjct: 1   MRPSKRAADEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG R++REA +G+QGGR+QEIQR IGR+LR+VVD+ ALG  QI +DCDVIQ
Sbjct: 61  AEYGMLPRSTGERMRREAAAGKQGGRTQEIQRFIGRSLRAVVDMQALGEMQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG WVALH+CL+ ME      ++ +VLK HVAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGGWVALHECLRWME-ARQMVRVEKVLKDHVAAISCGIYEGVPVLDLDYA 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D+NFVMT  G IVE+QG+AE   FS++ F A++ LA+  I  L+ LQK  ++
Sbjct: 180 EDSVAETDSNFVMTGKGGIVEIQGTAEGVPFSEEEFGALMKLARSGIDRLVSLQKMAVA 238


>gi|91204195|emb|CAJ71848.1| strongly similar to ribonuclease PH [Candidatus Kuenenia
           stuttgartiensis]
          Length = 238

 Score =  345 bits (887), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 113/240 (47%), Positives = 160/240 (66%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R+ +++R +++TR  +KY+ GS LV+ G+T ++ TA++EE VP  I+NT  GWIT
Sbjct: 1   MRVDNRKYDELRPVTITRNFTKYSAGSVLVESGNTKVICTASIEEYVPPHIKNTGTGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY +LP +T +RV RE+  G+  GR+ EIQR+IGR+LR++ DL+ L  R I IDCDVIQ
Sbjct: 61  AEYSLLPGATPSRVPRESTKGKISGRTHEIQRLIGRSLRAICDLTLLKERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG+++AL D +Q + D          L   VAAIS G++    ++DL Y 
Sbjct: 121 ADGGTRTAAITGSYIALADAVQWLLD--KNVIKENPLINSVAAISAGIVNNIALLDLCYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED++  VD NFVMT SG  +EVQG+ E   F +D    ML LA   I ++ ++QK  +  
Sbjct: 179 EDASAQVDMNFVMTGSGKYIEVQGTGEEYAFDEDQLAKMLTLAHKGICEITEIQKKALGT 238


>gi|206561359|ref|YP_002232124.1| ribonuclease PH [Burkholderia cenocepacia J2315]
 gi|226736893|sp|B4EBP8|RNPH_BURCJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|198037401|emb|CAR53336.1| ribonuclease PH [Burkholderia cenocepacia J2315]
          Length = 246

 Score =  345 bits (887), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 131/238 (55%), Positives = 172/238 (72%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ +++R+++LTR  +K+AEGS LV+FGDT +L TA++ E+VP ++R    GW+TA
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVLCTASVAERVPEFLRERGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R + IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTLHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +            +  HVAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSTLIAAGKL--TRSPITDHVAAISVGVYEGAPVLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMT +G  VEVQG+AE   FS+    A+L+LA+  IA+L++LQKDV+ 
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQGGIAELVQLQKDVLG 242


>gi|254226345|ref|ZP_04919935.1| ribonuclease PH [Vibrio cholerae V51]
 gi|125621150|gb|EAZ49494.1| ribonuclease PH [Vibrio cholerae V51]
          Length = 257

 Score =  345 bits (887), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 20  MRQDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 80  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D   H+   +        +KGHVAA+S G+L    + DL+Y 
Sbjct: 140 ADGGTRTASITGASVALADAFAHL--IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 197

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK  + +
Sbjct: 198 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASLLD 257


>gi|294629581|ref|ZP_06708141.1| ribonuclease PH [Streptomyces sp. e14]
 gi|292832914|gb|EFF91263.1| ribonuclease PH [Streptomyces sp. e14]
          Length = 241

 Score =  345 bits (887), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 116/239 (48%), Positives = 156/239 (65%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS LV FGDT +L TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTRVLCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+V+D  ALG   +++DCDV+QA
Sbjct: 63  EYAMLPRATNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         Q L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAFVALADAVAWAQGKKLIKTGRQPLTGTVSAVSVGIVGGVPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   D D N V T  G  VEVQG+AE   F++D   A+L+LA     DL  +Q+  +  
Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVAGCTDLAAIQRAALEK 241


>gi|225021578|ref|ZP_03710770.1| hypothetical protein CORMATOL_01599 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945569|gb|EEG26778.1| hypothetical protein CORMATOL_01599 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 242

 Score =  345 bits (887), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 103/239 (43%), Positives = 155/239 (64%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R I +TR  +    GS L+++G+T ++ TA+ E+ VP + +++  GW+TA
Sbjct: 6   RADGRAPDQLRPIRITRGFTTNPAGSVLIEYGNTRVMCTASAEQGVPRFKKDSGEGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R+ RE++ G+  GR+ EI R++GR+LR+ +DL+ LG   I IDCDV+QA
Sbjct: 66  EYAMLPAATHERMPRESMRGKVKGRTHEISRLVGRSLRAAIDLTLLGENTINIDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA++AL D + H+   +        L   +AA+S G++ G+  +DL Y E
Sbjct: 126 DGGTRTASITGAYIALADAIAHL--TAQGVVPGNPLLPPIAAVSVGIIDGHVCLDLPYEE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  DVD N +MT  G  VE+QG+AE  TFS++   AML+ A+    +LI+ Q   +  
Sbjct: 184 DSRADVDLNVIMTQEGKFVEIQGTAEHNTFSREELNAMLDYAEKGCKELIEAQLASLGK 242


>gi|52424307|ref|YP_087444.1| ribonuclease PH [Mannheimia succiniciproducens MBEL55E]
 gi|61215869|sp|Q65W01|RNPH_MANSM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|52306359|gb|AAU36859.1| Rph protein [Mannheimia succiniciproducens MBEL55E]
          Length = 240

 Score =  345 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  N+ R I +TR  +K+AEGS LV+FGDT ++ TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNNRAVNEPRPIKITRHYTKHAEGSVLVEFGDTKVICTATVEDSVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+I R+LR++VDL+ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMLREAAKGKQGGRTMEIQRLIARSLRAMVDLTALGERSITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  + +  N    +  LKG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALTDAINALVE--NGTLKTSPLKGLVAAVSVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G ++EVQG+AE   FS +    +LNLAK     +   Q+  ++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLNLAKQGCNMIFDAQRRALA 237


>gi|300024890|ref|YP_003757501.1| ribonuclease PH [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526711|gb|ADJ25180.1| ribonuclease PH [Hyphomicrobium denitrificans ATCC 51888]
          Length = 237

 Score =  345 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 138/235 (58%), Positives = 179/235 (76%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R+ +++R +S+ R VSK+AEGSCL+KFGDTH+L TA+LEE++P W++    GW+T
Sbjct: 1   MRPSKRKPDELRRVSIERAVSKHAEGSCLIKFGDTHVLCTASLEERLPQWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE  SG   GR+QEIQR++GRALR+VVDL  LG RQI +DCDVIQ
Sbjct: 61  AEYSMLPRATHERTRREVTSGHPSGRTQEIQRLVGRALRAVVDLPKLGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVALHDC+Q M+          VL+ HVAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALHDCIQWMK--MRDMVKDGVLRDHVAAVSCGIYKGDPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  D D+NFVMT +G IVE+QG+AE   F+++ F  +L LAK  I +L++LQK
Sbjct: 179 EDSNADADSNFVMTGTGGIVEIQGTAETTPFTEERFGDLLTLAKKGIGELVQLQK 233


>gi|293390938|ref|ZP_06635272.1| ribonuclease PH [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951472|gb|EFE01591.1| ribonuclease PH [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 238

 Score =  345 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q R I +TR  +K+AEGS LV+FGDT +L TA++EE VP +++    GW+T
Sbjct: 1   MRPNQRANHQPRPIQITRHYTKHAEGSVLVEFGDTKVLCTASVEESVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERCITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   +N       LKG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALCDALNSL--VTNGTLAKNPLKGLVAAISVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK     + + Q+  ++ 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCDMIFQTQRATLAE 238


>gi|158425913|ref|YP_001527205.1| ribonuclease PH [Azorhizobium caulinodans ORS 571]
 gi|172047841|sp|A8HV93|RNPH_AZOC5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|158332802|dbj|BAF90287.1| ribonuclease PH [Azorhizobium caulinodans ORS 571]
          Length = 238

 Score =  345 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 141/239 (58%), Positives = 178/239 (74%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  ++MR +S  R V ++AEGSCLVKFGDTH+L  ATLEE++P W++    GW+T
Sbjct: 1   MRPSRRANDEMRAVSFERGVLRHAEGSCLVKFGDTHVLVAATLEERLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +REA +G+Q GR+QEIQR+IGR+LRSV DL  LG RQI +DCDV+Q
Sbjct: 61  AEYSMLPRATLERTRREATTGKQSGRTQEIQRLIGRSLRSVTDLVGLGERQITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVALHDCL  M   S     +  LK +VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGAWVALHDCLNWMYQRS--MLKTIPLKENVAAISCGIHEGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFVMT +G IVE+QG+AE+  FSQD   ++L LA+  + +L++LQK  I 
Sbjct: 179 EDSKAETDANFVMTGTGGIVEIQGTAEKTPFSQDELLSLLALARKGVGELVELQKQAIK 237


>gi|319789115|ref|YP_004150748.1| ribonuclease PH [Thermovibrio ammonificans HB-1]
 gi|317113617|gb|ADU96107.1| ribonuclease PH [Thermovibrio ammonificans HB-1]
          Length = 234

 Score =  345 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 126/239 (52%), Positives = 167/239 (69%), Gaps = 7/239 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q+RE+ +T    K+AEGSCL++FGDT ++ TA++EEKVP ++R T  GWIT
Sbjct: 2   IRSDGRAPDQLREVKITLDYIKHAEGSCLIEFGDTKVICTASVEEKVPPFLRGTGQGWIT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R+ REA  G+  GR+QEIQR+IGR+LRS VDL+ALG   I IDCDVIQ
Sbjct: 62  AEYAMLPRATAQRMVREAARGKLTGRTQEIQRLIGRSLRSAVDLTALGEVTIWIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL+  L+ ME           ++  +AA+S G++ G  ++DL+Y 
Sbjct: 122 ADGGTRTASITGAFVALYRALEKMEKLEA-------VRSFLAAVSVGIVDGTVLLDLNYE 174

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  +VD N VM + G   EVQGSAE   F++D    MLNLA   I +LI  QK+V+ 
Sbjct: 175 EDSMAEVDMNVVMNEKGEFAEVQGSAEGRPFTRDELDRMLNLASKGIMELISKQKEVLK 233


>gi|145632517|ref|ZP_01788251.1| ribonuclease PH [Haemophilus influenzae 3655]
 gi|144986712|gb|EDJ93264.1| ribonuclease PH [Haemophilus influenzae 3655]
          Length = 238

 Score =  345 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ R+I +TR  +K+AEGS LV+FGDT +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  + +          +KG V+AIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALCDAINSLIENGTLKI--NPIKGLVSAISVGIVDGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK     +   Q++ + 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREALG 237


>gi|156972970|ref|YP_001443877.1| ribonuclease PH [Vibrio harveyi ATCC BAA-1116]
 gi|269959372|ref|ZP_06173755.1| ribonuclease PH [Vibrio harveyi 1DA3]
 gi|156524564|gb|ABU69650.1| hypothetical protein VIBHAR_00648 [Vibrio harveyi ATCC BAA-1116]
 gi|269835809|gb|EEZ89885.1| ribonuclease PH [Vibrio harveyi 1DA3]
          Length = 240

 Score =  345 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 3   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 63  AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ D       +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 123 ADGGTRTASISGASVAMADAFQHLVDSGKL--KANPMKGHVAAVSVGLLGDDVLCDLEYV 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +   A+L  AK  I +++  QK  ++N
Sbjct: 181 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 240


>gi|300311449|ref|YP_003775541.1| tRNA nucleotidyltransferase [Herbaspirillum seropedicae SmR1]
 gi|124483528|emb|CAM32637.1| tRNA nucleotidyltransferase (ribonuclease PH) protein
           [Herbaspirillum seropedicae]
 gi|300074234|gb|ADJ63633.1| tRNA nucleotidyltransferase (ribonuclease PH) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score =  345 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 131/238 (55%), Positives = 168/238 (70%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR   Q+RE+ LTR+ +K+AEGS LV+FGDT +L TA++EEKVP +++    GW+TA
Sbjct: 6   RPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R+ REA  G+Q GR+QEIQR+IGRALR+  DL A G R + +DCDV+QA
Sbjct: 66  EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA VA +D    ++  S     +  +K  VAAIS G+  G P++DLDY E
Sbjct: 126 DGGTRTAAITGAMVAAYDAFAGLK--SQGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMTD+GH VEVQG+AE A F +    A+L+LA+  IA L  LQ+  + 
Sbjct: 184 DSDCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQALG 241


>gi|312963858|ref|ZP_07778329.1| ribonuclease PH [Pseudomonas fluorescens WH6]
 gi|311281893|gb|EFQ60503.1| ribonuclease PH [Pseudomonas fluorescens WH6]
          Length = 240

 Score =  345 bits (886), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 162/239 (67%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  +       +    LK  +AA+S GM  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALVDAL-KVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F      AML LA+  + ++  LQ   +++
Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPAELNAMLALAQKGMTEIFALQNAALAD 240


>gi|46015433|pdb|1R6L|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
           From Pseudomonas Aeruginosa
          Length = 239

 Score =  345 bits (886), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 121/239 (50%), Positives = 159/239 (66%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T + E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYG LPRSTG R +REA  G+QGGR+ EIQR+IGR+LR+ +DLS LG   + IDCDVIQA
Sbjct: 63  EYGXLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++           LK  VAA+S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGATVALIDALAVLKKRGAL--KGNPLKQXVAAVSVGIYQGVPVLDLDYLE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N V TD+G  +EVQG+AE A F      A L LA+    +L +LQ+  ++ 
Sbjct: 181 DSAAETDLNVVXTDAGGFIEVQGTAEGAPFRPAELNAXLELAQQGXQELFELQRAALAE 239


>gi|254389819|ref|ZP_05005043.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
 gi|197703530|gb|EDY49342.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
          Length = 246

 Score =  345 bits (886), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 118/241 (48%), Positives = 154/241 (63%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS L+ FGDT +  TA++ E VP W + +  GW+T 
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTG 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  RE+V G+ GGR+ EI R+IGR+LR+VVD  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDCKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +    +        Q L   VAA+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAITWAREKKLVRAGRQPLTTTVAAVSVGIVDGTPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D   D D N V T  G  VEVQG+AE   F +    A+L+LA    ADL  LQ D ++  
Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRAELDALLDLAAGGCADLAALQNDALART 242

Query: 242 V 242
           V
Sbjct: 243 V 243


>gi|262163750|ref|ZP_06031490.1| ribonuclease PH [Vibrio mimicus VM223]
 gi|262027730|gb|EEY46395.1| ribonuclease PH [Vibrio mimicus VM223]
          Length = 238

 Score =  345 bits (886), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 1   MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D   H+   +        +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASITGASVALADAFAHL--IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK  + +
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGDPFSHEQLLELLAVAKKGIADIVAVQKASLLD 238


>gi|323137091|ref|ZP_08072171.1| ribonuclease PH [Methylocystis sp. ATCC 49242]
 gi|322397852|gb|EFY00374.1| ribonuclease PH [Methylocystis sp. ATCC 49242]
          Length = 238

 Score =  345 bits (886), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 134/240 (55%), Positives = 178/240 (74%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  ++MR +S  R V++YAEGSCLVKFG+TH+L  A+LE+K P W+R    GW+T
Sbjct: 1   MRPSKRAPDEMRPVSFERGVARYAEGSCLVKFGNTHVLCAASLEDKPPPWLRGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+ +G+  GR+QEIQR+IGR+LR+V +L A+G RQI+IDCDVIQ
Sbjct: 61  AEYSMLPRATHTRTRRESSAGKLTGRTQEIQRLIGRSLRAVTNLPAMGERQIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAW+AL DC + M   S        L+ HVAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWLALRDCFEWMR--SRSIIKDNPLRDHVAAVSCGIFNGTPVIDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDST + DANFV+T SG +VE+Q +AE A FS D   ++L LA+  +ADL+ LQK  +++
Sbjct: 179 EDSTAETDANFVITGSGGLVEIQATAEVAVFSPDELTSLLTLAQGGVADLVALQKAALAS 238


>gi|227115107|ref|ZP_03828763.1| ribonuclease PH [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 238

 Score =  345 bits (886), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 117/238 (49%), Positives = 160/238 (67%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++ TR  +K+AEGS LV+FGDT +L  AT+EE VP +++    GW+T
Sbjct: 1   MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ +DL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNSREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  M       +    +KG +AA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNQMVAKGKLKK--NPMKGMIAAVSVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VMT+ G ++EVQG+AE   FS D    +L LA+  I  +++ QK  +
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHDELLTLLALARGGIDTIVQAQKAAL 236


>gi|170719366|ref|YP_001747054.1| ribonuclease PH [Pseudomonas putida W619]
 gi|226736926|sp|B1J4L4|RNPH_PSEPW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|169757369|gb|ACA70685.1| ribonuclease PH [Pseudomonas putida W619]
          Length = 240

 Score =  345 bits (886), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++      +    LK  +AA+S GM  G  ++DLDY E
Sbjct: 123 DGGTRTASITGAMVALVDALAVIKKRG-GLKAGNPLKHMIAAVSVGMYQGEAVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  + F AML LA+  + ++ +LQ+  +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMNEIFELQQVALAD 240


>gi|153835514|ref|ZP_01988181.1| ribonuclease PH [Vibrio harveyi HY01]
 gi|148867911|gb|EDL67124.1| ribonuclease PH [Vibrio harveyi HY01]
          Length = 238

 Score =  345 bits (886), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ D       +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKL--KANPMKGHVAAVSVGLLGDDVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +   A+L  AK  I +++  QK  ++N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKVGITEIVAAQKAALAN 238


>gi|26991970|ref|NP_747395.1| ribonuclease PH [Pseudomonas putida KT2440]
 gi|148550402|ref|YP_001270504.1| ribonuclease PH [Pseudomonas putida F1]
 gi|61216052|sp|Q88C89|RNPH_PSEPK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228303|sp|A5WB10|RNPH_PSEP1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|24987100|gb|AAN70859.1|AE016730_5 ribonuclease PH [Pseudomonas putida KT2440]
 gi|148514460|gb|ABQ81320.1| RNAse PH [Pseudomonas putida F1]
          Length = 240

 Score =  345 bits (886), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRVADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDITLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++      +    LK  +AA+S GM  G  ++DLDY E
Sbjct: 123 DGGTRTASITGAMVALCDALAVIKKRG-GLKGGNPLKHMIAAVSVGMYQGEAVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F  + F AML LA+  + ++ +LQ+  +++
Sbjct: 182 DSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMNEIFELQQAALAD 240


>gi|84386442|ref|ZP_00989470.1| ribonuclease PH [Vibrio splendidus 12B01]
 gi|84378866|gb|EAP95721.1| ribonuclease PH [Vibrio splendidus 12B01]
          Length = 238

 Score =  345 bits (886), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 117/240 (48%), Positives = 163/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA SG+QGGR+ EIQR+I R+LR+VVDL  +G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKVMGEIMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D +  +       +    +KGHVAA+S G++    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAINSLLASGKLKK--NPMKGHVAAVSVGIVGAQALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +    +L LA   I D+++ QK  +++
Sbjct: 179 EDSAADTDMNVVMTEDGKMIEIQGTAEGEPFSHEELMQLLALANKGITDIVEAQKAALAD 238


>gi|301168926|emb|CBW28521.1| ribonuclease PH (pseudogene) [Haemophilus influenzae 10810]
          Length = 238

 Score =  345 bits (886), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ R+I +TR  +K+AEGS LV+FGDT +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  + +  N    +  +KG V+AIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALCDAINGLIE--NGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK     +   Q+  + 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQRKALG 237


>gi|254385745|ref|ZP_05001066.1| ribonuclease PH [Streptomyces sp. Mg1]
 gi|194344611|gb|EDX25577.1| ribonuclease PH [Streptomyces sp. Mg1]
          Length = 244

 Score =  345 bits (886), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 114/237 (48%), Positives = 152/237 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS L+ FGDT +  TA+  E VP W + +  GW+T+
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASFTEGVPRWRKGSGEGWVTS 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  RE+V G+ GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L G VAA+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWGQRKKLIKAGRKPLTGTVAAVSVGIVDGEPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   + D N V T  G  VEVQG+AE   F +    A+L+LA    ADL  LQ   +
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGEPFDRKELNALLDLAAGGCADLQALQLGAL 239


>gi|84684654|ref|ZP_01012555.1| ribonuclease PH [Maritimibacter alkaliphilus HTCC2654]
 gi|84667633|gb|EAQ14102.1| ribonuclease PH [Rhodobacterales bacterium HTCC2654]
          Length = 250

 Score =  345 bits (886), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 133/239 (55%), Positives = 176/239 (73%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +++R IS+   V+K+AEGSCL+K GDTH+L TA+LEE+VP W+RNT  GW+T
Sbjct: 14  MRPSGRNVDELRPISIETGVTKHAEGSCLIKVGDTHVLCTASLEERVPPWLRNTGMGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA +G+QGGR+ EIQR+IGR+LR+ VD  ALG RQI +DCDVIQ
Sbjct: 74  AEYGMLPRSTSSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRQALGERQITVDCDVIQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +Q +    +    S  L   VAA+SCG+  G P++DLDY 
Sbjct: 134 ADGGTRCASITGGWVALRLAVQKLMKAGDIV--SDPLIDPVAAVSCGIYAGQPVLDLDYP 191

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD NFVMT +G ++EVQ SAE +TFS+     ++ LA+  +A+L+  QK  ++
Sbjct: 192 EDSEAGVDGNFVMTGTGRLIEVQMSAEGSTFSRAQMDDLMGLAEKGVAELVAAQKAAVA 250


>gi|239831019|ref|ZP_04679348.1| ribonuclease PH [Ochrobactrum intermedium LMG 3301]
 gi|239823286|gb|EEQ94854.1| ribonuclease PH [Ochrobactrum intermedium LMG 3301]
          Length = 238

 Score =  345 bits (885), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 148/239 (61%), Positives = 190/239 (79%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  ++MR +S  R +SK+AEGSCLVKFGDTH+L TA+LEEKVP W+RNT  GW+T
Sbjct: 1   MRPSKRAADEMRAVSFERGISKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R++REA +G+QGGR+QEIQR+IGR+LR+VVD+ ALG  QI +DCDVIQ
Sbjct: 61  AEYGMLPRSTGDRMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEVQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG WVALH+CL+ ME      ++ +VLK H+AAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGGWVALHECLRWME-ARQMVRVEKVLKDHIAAISCGIYEGEPVLDLDYA 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D+NFVMT  G IVE+QG+AE A FS++ F +++ LA+  I  L+ LQK  ++
Sbjct: 180 EDSVAETDSNFVMTGKGGIVEIQGTAEGAPFSEEEFASLMKLARGGIDRLVSLQKMAVA 238


>gi|163783654|ref|ZP_02178642.1| RNase PH [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881059|gb|EDP74575.1| RNase PH [Hydrogenivirga sp. 128-5-R1-1]
          Length = 255

 Score =  345 bits (885), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 113/236 (47%), Positives = 160/236 (67%), Gaps = 2/236 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+E+++R + + R    + EGSCL++FGDT ++ TA++ E VP +++    GWIT
Sbjct: 1   MRKDGRREDELRPVKIVRDFLSHPEGSCLIEFGDTKVICTASVTESVPPFLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+  GR+ EIQRMIGRA+R+ VDL+ LG R + +DCDVIQ
Sbjct: 61  AEYSMLPRATHTRNIRESVQGKISGRTHEIQRMIGRAMRTAVDLTKLGERTLWVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA+ D L  + +  +    S  +K  VAA+S G++ G P++DL++ 
Sbjct: 121 ADGGTRTASITGAFVAVADALIKLYE--DGIIQSVPIKDFVAAVSVGIVNGKPLLDLNFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           EDS   VD N V T  G   EVQ   E  TFS+D    +L+LA   I++L++LQ+ 
Sbjct: 179 EDSMAQVDMNVVGTGEGRFSEVQSMGEEYTFSRDELDNLLDLALKGISELVELQRA 234


>gi|294812846|ref|ZP_06771489.1| Ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
 gi|326441376|ref|ZP_08216110.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
 gi|294325445|gb|EFG07088.1| Ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
          Length = 248

 Score =  345 bits (885), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 118/241 (48%), Positives = 154/241 (63%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS L+ FGDT +  TA++ E VP W + +  GW+T 
Sbjct: 5   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKGSGEGWVTG 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  RE+V G+ GGR+ EI R+IGR+LR+VVD  ALG   I++DCDV+QA
Sbjct: 65  EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDCKALGENTIVLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +    +        Q L   VAA+S G++ G P++DL Y E
Sbjct: 125 DGGTRTAAITGAYVALADAITWAREKKLVRAGRQPLTTTVAAVSVGIVDGTPLLDLCYEE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D   D D N V T  G  VEVQG+AE   F +    A+L+LA    ADL  LQ D ++  
Sbjct: 185 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRAELDALLDLAAGGCADLAALQNDALART 244

Query: 242 V 242
           V
Sbjct: 245 V 245


>gi|153007527|ref|YP_001368742.1| ribonuclease PH [Ochrobactrum anthropi ATCC 49188]
 gi|166228300|sp|A6WVA9|RNPH_OCHA4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|151559415|gb|ABS12913.1| ribonuclease PH [Ochrobactrum anthropi ATCC 49188]
          Length = 238

 Score =  345 bits (885), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 148/239 (61%), Positives = 189/239 (79%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  ++MR +S  R +SK+AEGSCLVKFGDTH+L TA+LEEKVP W+RNT  GW+T
Sbjct: 1   MRPSKRAADEMRAVSFERGISKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRNTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R++REA +G+QGGR+QEIQR+IGR+LR+VVD+ ALG  QI +DCDVIQ
Sbjct: 61  AEYGMLPRSTGDRMRREAAAGKQGGRTQEIQRLIGRSLRAVVDMQALGEVQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG WVALH+CL+ ME      ++ +VLK H+AAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGGWVALHECLRWME-ARQMVRVEKVLKDHIAAISCGIYEGEPVLDLDYA 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D+NFVMT  G IVE+QG+AE A FS++ F  ++ LA+  I  L+ LQK  ++
Sbjct: 180 EDSVAETDSNFVMTGKGGIVEIQGTAEGAPFSEEEFANLMKLARGGIDRLVSLQKMAVA 238


>gi|260582842|ref|ZP_05850627.1| ribonuclease PH [Haemophilus influenzae NT127]
 gi|260094055|gb|EEW77958.1| ribonuclease PH [Haemophilus influenzae NT127]
          Length = 238

 Score =  345 bits (885), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ R+I +TR  +K+AEGS LV+FGDT +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+Q GR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  + +  N    +  +KG V+AIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALCDAINSLIE--NGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK     +   Q++ + 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLILLDLAKQGCNQIFIAQREALG 237


>gi|260906180|ref|ZP_05914502.1| ribonuclease PH [Brevibacterium linens BL2]
          Length = 240

 Score =  345 bits (885), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 117/240 (48%), Positives = 160/240 (66%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR  +++RE+++TR     AEGS LV+FG+T +L  A+L   VP W++    GW+T
Sbjct: 1   MRADGRNADELREVTITRNWINTAEGSALVEFGNTRVLVAASLTAGVPRWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  RE+V G+ GGR+ EI R+IGR+LR+V+DL  LG   +++DCDV+Q
Sbjct: 61  AEYAMLPRATDSRNTRESVKGKLGGRTHEISRLIGRSLRAVIDLDKLGENTLVLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D +            +  +K  +AAIS G++ G P++DL Y 
Sbjct: 121 ADGGTRTASITGAYVALADAIDKGRSTGIIPAANNPIKDSIAAISVGIIDGEPVLDLPYV 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT SG  VEVQG+AE A F +D    +L+LA    ADL  +Q +V+S 
Sbjct: 181 EDSRADTDMNVVMTGSGQFVEVQGTAEGAPFDRDELGTLLDLAAKGCADLTGIQSEVLSK 240


>gi|83648974|ref|YP_437409.1| ribonuclease PH [Hahella chejuensis KCTC 2396]
 gi|123530517|sp|Q2S8P0|RNPH_HAHCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|83637017|gb|ABC32984.1| ribonuclease PH [Hahella chejuensis KCTC 2396]
          Length = 238

 Score =  345 bits (885), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 124/240 (51%), Positives = 163/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ +Q R+I +T+  +K+AEGS LV+FGDT ++ TAT+E  VP ++R    GW+T
Sbjct: 1   MRPSGRQPDQTRDIKITKNYTKHAEGSVLVEFGDTKVICTATVENGVPRFLRGEDQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ VDL  +    I IDCDVIQ
Sbjct: 61  AEYGMLPRATGTRNQREAARGKQGGRTLEIQRLIGRSLRAAVDLKKMPDISITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +VA+ D +  +   +     +  +   VAAIS G+  G P+VDLDY 
Sbjct: 121 ADGGTRTASITGGFVAMADAINSL--LAKGQLKNNPILHKVAAISVGVYEGVPVVDLDYD 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMTD    +EVQG+AE A FS     AML+LA   I  L   Q++V+ +
Sbjct: 179 EDSKAETDMNVVMTDQDGFIEVQGTAEAAPFSSAELTAMLDLAGKGIRQLFVAQEEVLQS 238


>gi|114705078|ref|ZP_01437986.1| ribonuclease PH [Fulvimarina pelagi HTCC2506]
 gi|114539863|gb|EAU42983.1| ribonuclease PH [Fulvimarina pelagi HTCC2506]
          Length = 240

 Score =  345 bits (885), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 139/240 (57%), Positives = 187/240 (77%), Gaps = 1/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  + MRE+SLT  V+++AEGSCLVKFG+T +L TA+LEE++P W++N+  GW+T
Sbjct: 1   MRPSKRPADSMREVSLTTGVNRHAEGSCLVKFGETQVLCTASLEERIPPWLKNSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG+R++REA +G+QGGR+ EIQR+IGR+LR+VVD+ ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATGDRMRREASAGKQGGRTVEIQRLIGRSLRAVVDMGALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +VAL +CL+ ME   +  Q   VLKGHVAA+SCG+    P++DLDY 
Sbjct: 121 ADGGTRTASITGGYVALAECLKWME-ARSMCQRKNVLKGHVAAVSCGIYKNEPVLDLDYA 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + DANFVMT +G IVE+QG+AE   FS++ F  ++ LAK  I +L++ Q   + +
Sbjct: 180 EDSVAETDANFVMTGAGGIVEIQGTAEGTPFSEEEFTKLMALAKKGIGELVEAQTAALGD 239


>gi|262404946|ref|ZP_06081498.1| ribonuclease PH [Vibrio sp. RC586]
 gi|262348785|gb|EEY97926.1| ribonuclease PH [Vibrio sp. RC586]
          Length = 238

 Score =  345 bits (885), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 120/240 (50%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 1   MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+    I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMSEIMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D   H+       +    +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASITGASVALADAFAHLMAKGQLKK--NPMKGHVAAVSVGILGENVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK  + +
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASLLD 238


>gi|329896532|ref|ZP_08271590.1| Ribonuclease PH [gamma proteobacterium IMCC3088]
 gi|328921749|gb|EGG29122.1| Ribonuclease PH [gamma proteobacterium IMCC3088]
          Length = 240

 Score =  345 bits (885), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 125/239 (52%), Positives = 170/239 (71%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGRQ +++REI+++R  + +AEGS LV+FG T +L  A++ E VP ++R +  GWITA
Sbjct: 3   RPSGRQPHELREITISRNYTCHAEGSVLVEFGRTKVLCNASVSEGVPRFLRGSGQGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG+R+ REA  G+QGGR+ EIQR+IGR+LR+VVDL  LG   I +DCDVIQA
Sbjct: 63  EYGMLPRSTGSRMDREAARGKQGGRTLEIQRLIGRSLRAVVDLKRLGEYTITVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  ++   +K   +  L   VA++S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGACVALVDALNGLQR--DKALKTDPLNQLVASVSVGVYQGVPVLDLDYPE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS+ D D N VM + G ++EVQG+AE ATF +     ML+LA+  I DL + Q+  ++ 
Sbjct: 181 DSSADTDMNVVMGEDGGLIEVQGTAEGATFDRATLNQMLDLAEAGIRDLFEAQRKALAQ 239


>gi|145631050|ref|ZP_01786825.1| ribonuclease PH [Haemophilus influenzae R3021]
 gi|144983335|gb|EDJ90817.1| ribonuclease PH [Haemophilus influenzae R3021]
          Length = 238

 Score =  345 bits (885), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ R+I +TR  +K+AEGS LV+FGDT +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+Q GR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  + +  N    +  +KG V+AIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALCDAINGLIE--NGTLKTNPIKGLVSAISVGIVEGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK     +   Q+  + 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQRKALG 237


>gi|83313597|ref|YP_423861.1| ribonuclease PH [Magnetospirillum magneticum AMB-1]
 gi|82948438|dbj|BAE53302.1| RNase PH [Magnetospirillum magneticum AMB-1]
          Length = 241

 Score =  345 bits (885), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 135/239 (56%), Positives = 171/239 (71%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R + L   VS++AEGSC+ KFGDTH+L TA++EEKVP ++RNT  GW+T
Sbjct: 3   MRPSGRAPDQLRTVILETGVSRHAEGSCIAKFGDTHVLCTASVEEKVPPFLRNTGKGWVT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+ EIQR+IGR+LRSV DL+A+G RQI IDCDV+Q
Sbjct: 63  AEYGMLPRSTHTRTDREAAKGKQSGRTHEIQRLIGRSLRSVTDLAAMGERQIKIDCDVLQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VALH   Q +         +  L  HVAAISCG+  G  ++DLDY 
Sbjct: 123 ADGGTRTASITGAFVALHLAFQRLVRLE--LLKAIPLTDHVAAISCGIYEGVAVLDLDYP 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    DANFVMT +G IVE+QG+AE   FS+  F  + +LA+  I  L++ QK  + 
Sbjct: 181 EDSNAQADANFVMTGTGGIVEIQGTAEERPFSRTQFLELTDLAEAGIRQLVEAQKKALG 239


>gi|148827427|ref|YP_001292180.1| ribonuclease PH [Haemophilus influenzae PittGG]
 gi|166228285|sp|A5UG91|RNPH_HAEIG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|148718669|gb|ABQ99796.1| ribonuclease PH [Haemophilus influenzae PittGG]
          Length = 238

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ R+I +TR  +K+AEGS LV+FGDT +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+Q GR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQSGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  + +  N    +  +KG V+AIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALCDAINSLIE--NGTLKTNPIKGLVSAISVGIVEGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK     +   Q+ V+ 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQRKVLG 237


>gi|118496994|ref|YP_898044.1| ribonuclease PH [Francisella tularensis subsp. novicida U112]
 gi|194324228|ref|ZP_03058002.1| ribonuclease PH [Francisella tularensis subsp. novicida FTE]
 gi|166228281|sp|A0Q4X5|RNPH_FRATN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|118422900|gb|ABK89290.1| ribonuclease PH [Francisella novicida U112]
 gi|194321675|gb|EDX19159.1| ribonuclease PH [Francisella tularensis subsp. novicida FTE]
          Length = 235

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 116/232 (50%), Positives = 162/232 (69%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R + +T   +K+AEGS L++FGDT ++ TA++   VP + +++  GW+T
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPEFKKDSGEGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGRALR+ VDL+A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +A+ D +++M+      + +  L   VAAIS G+    P++DLDY 
Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           EDS  + D N VM  +G I+E+QG+AE   FS++ F  ML LAK  I ++  
Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 232


>gi|121728030|ref|ZP_01681069.1| ribonuclease PH [Vibrio cholerae V52]
 gi|121629733|gb|EAX62152.1| ribonuclease PH [Vibrio cholerae V52]
 gi|146315337|gb|ABQ19876.1| ribonuclease PH [Vibrio cholerae O395]
 gi|227012057|gb|ACP08267.1| ribonuclease PH [Vibrio cholerae O395]
          Length = 257

 Score =  344 bits (884), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 20  MRPDNRAADQVRSIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 80  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D   H+   +        +KGHVAA+S G+L    + DL+Y 
Sbjct: 140 ADGGTRTASITGASVALADAFAHL--IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 197

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK  + +
Sbjct: 198 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASLLD 257


>gi|148359584|ref|YP_001250791.1| ribonuclease PH [Legionella pneumophila str. Corby]
 gi|296107626|ref|YP_003619327.1| ribonuclease PH [Legionella pneumophila 2300/99 Alcoy]
 gi|166228288|sp|A5IDJ5|RNPH_LEGPC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|148281357|gb|ABQ55445.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Legionella pneumophila str. Corby]
 gi|295649528|gb|ADG25375.1| ribonuclease PH [Legionella pneumophila 2300/99 Alcoy]
          Length = 235

 Score =  344 bits (884), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 115/237 (48%), Positives = 165/237 (69%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R+ +Q+R +++TR  + YAEGS LV+FG T ++  A++ E VP +++    GWIT
Sbjct: 1   MRPSNREHDQLRPVTITRNFTNYAEGSVLVEFGQTKVICNASIVEGVPRFLKGKNQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+QGGR+ EIQR+IGR+LR+ +DL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTEREASKGKQGGRTLEIQRLIGRSLRACIDLKVLGENTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG+ VA+ D +  M       ++   +  +VAA+S G+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGSCVAMRDAIHWMVQREKIKKM--PVFNYVAAVSVGIYRGQPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           ED   + D N VM + GH +EVQG+AE  +F+++   +ML+LA+  I  LI++QK+ 
Sbjct: 179 EDVLAETDMNVVMNEQGHFIEVQGTAEDNSFNREQLNSMLSLAEIGIPQLIEIQKNA 235


>gi|312795401|ref|YP_004028323.1| ribonuclease PH [Burkholderia rhizoxinica HKI 454]
 gi|312167176|emb|CBW74179.1| Ribonuclease PH (EC 2.7.7.56) [Burkholderia rhizoxinica HKI 454]
          Length = 243

 Score =  344 bits (884), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 122/237 (51%), Positives = 165/237 (69%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  + +R++ +TR  +K+AEGS L++ GDT ++ TA++ EKVP ++R+   GW+TA
Sbjct: 7   RPSGRAADALRDVCITRHYTKHAEGSVLIECGDTKVICTASVLEKVPEFLRDRGRGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL  LG R + IDCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRALRAVFDLEKLGPRTLHIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+ITGA++A HD +  +   ++    +  +  HVAA+S G+    P++DLDY E
Sbjct: 127 DGGTRCASITGAFIAAHDAVDTL--LAHGKLTATPILDHVAAVSVGIHGATPVLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VMT +G  VEVQG+AE   FS+D   A+L LA+  I  LI+LQK  +
Sbjct: 185 DSHCDTDMNVVMTGAGRFVEVQGTAEGEPFSRDELNALLGLAESGITRLIELQKKAL 241


>gi|144897368|emb|CAM74232.1| RNase PH [Magnetospirillum gryphiswaldense MSR-1]
          Length = 241

 Score =  344 bits (884), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 133/238 (55%), Positives = 170/238 (71%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I L    S++AEGSCL KFGDTH+L TA++EE+VP ++RNT  GW+TA
Sbjct: 4   RPSGRAFDQLRVIRLETGFSRHAEGSCLAKFGDTHVLCTASVEERVPPFLRNTGKGWVTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+Q GR+ EIQR+IGR+LR+V DL+A+G  QI +DCDV+QA
Sbjct: 64  EYGMLPRSTHTRTDREAAKGKQSGRTHEIQRLIGRSLRAVTDLTAMGEMQIKLDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGAWVALH   Q + +      +   L   VAAISCG+  G  ++DLDY E
Sbjct: 124 DGGTRTASITGAWVALHLAFQKLVEAGKLSAV--PLIDQVAAISCGIYEGQAVLDLDYPE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS+   DANFV+T +G IVEVQG+AE   FS+D F  +L LA+  + +L  LQK  + 
Sbjct: 182 DSSAQADANFVLTGTGGIVEVQGTAEERPFSRDQFTQLLELAEKGVTELALLQKKAVG 239


>gi|187931269|ref|YP_001891253.1| ribonuclease PH [Francisella tularensis subsp. mediasiatica FSC147]
 gi|226736911|sp|B2SF43|RNPH_FRATM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|187712178|gb|ACD30475.1| ribonuclease PH [Francisella tularensis subsp. mediasiatica FSC147]
          Length = 235

 Score =  344 bits (884), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 117/232 (50%), Positives = 162/232 (69%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R + +T   +K+AEGS L++FGDT ++ TA++   VP + +++  GW+T
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGRALR+ VDL+A+G   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHMRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +A+ D +++M+      + +  L   VAAIS G+    P++DLDY 
Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGMLDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           EDS  + D N VM  +G I+E+QG+AE   FS++ F  ML LAK  I ++  
Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 232


>gi|254362020|ref|ZP_04978149.1| tRNA nucleotidyltransferase [Mannheimia haemolytica PHL213]
 gi|153093571|gb|EDN74545.1| tRNA nucleotidyltransferase [Mannheimia haemolytica PHL213]
          Length = 238

 Score =  344 bits (884), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 170/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  NQ+REI +TR  ++YAEGS L++FG+T +L  AT+EE VP +++  + GW+T
Sbjct: 1   MRPNNRANNQVREIKITRNYTRYAEGSVLIEFGETKVLCNATVEESVPRFLKGQQQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL+D +  +   +N    +  +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALYDAMNKL--VANGTLKTNPMKGLVAAISVGIVAGEAVCDLEYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G +VEVQG+AE   FS      +L+LAK  I+ L++ Q+  ++ 
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHQELLTLLDLAKQGISQLVEAQRKALAE 238


>gi|21759411|sp|Q9AES0|RNPH_PASHA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|13591380|gb|AAK29744.1| ribonuclease PH-like protein [Mannheimia haemolytica]
          Length = 238

 Score =  344 bits (884), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 169/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  NQ+REI +TR  ++YAEGS L++FG+T +L  AT+EE VP +++  + GW+T
Sbjct: 1   MRPNNRANNQVREIKITRNYTRYAEGSVLIEFGETKVLCNATVEESVPRFLKGQQQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL+D +  +   +N    +  +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALYDAMNKL--VANGTLKTNPMKGLVAAISVGIVAGEAVCDLEYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM   G +VEVQG+AE   FS      +L+LAK  I+ L++ Q+  ++ 
Sbjct: 179 EDSNAETDMNVVMVQDGRLVEVQGTAEGEPFSHQELLTLLDLAKQGISQLVEAQRKALAE 238


>gi|262273502|ref|ZP_06051316.1| ribonuclease PH [Grimontia hollisae CIP 101886]
 gi|262222480|gb|EEY73791.1| ribonuclease PH [Grimontia hollisae CIP 101886]
          Length = 238

 Score =  344 bits (884), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 123/238 (51%), Positives = 163/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+  Q+R +++TR  + +AEGS LV FGDT ++ TA++EE VP +++    GWIT
Sbjct: 1   MRPSGREVGQIRPVTITRHFTAHAEGSVLVAFGDTKVICTASVEEGVPRFLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNRREAANGKQGGRTMEIQRLIARSLRAAVDLEKLGDFTITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +            +KGHVAA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTASITGASVALADALNKLVSEGKL--KENPMKGHVAAVSVGIFEGTPICDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  D D N VM + G ++EVQG+AE   F+ +   AML+LA   I D++ +QK  +
Sbjct: 179 EDSAADTDMNVVMLEDGRMIEVQGTAEAEPFTAEELNAMLSLAAKGIQDIVAIQKASL 236


>gi|56476728|ref|YP_158317.1| ribonuclease PH [Aromatoleum aromaticum EbN1]
 gi|81598865|sp|Q5P5J6|RNPH_AZOSE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|56312771|emb|CAI07416.1| Ribonuclease PH [Aromatoleum aromaticum EbN1]
          Length = 239

 Score =  344 bits (884), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 131/238 (55%), Positives = 168/238 (70%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R+ +Q+R + +TR  + +AEGS LV+FG T +L TA++E+ VP ++R    GW+T
Sbjct: 1   MRPSQRRPDQLRAVMITRNFTCHAEGSVLVEFGATRVLCTASVEDTVPPFLRGRGQGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVDLSALG RQI+IDCDV+Q
Sbjct: 61  AEYGMLPRATHTRSAREAAKGKQSGRTQEIQRLIGRSLRAVVDLSALGERQIVIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VA+HD  + +            L+  VAA+S GM  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGACVAVHDAFRKLVTEGKL--PYSPLREFVAAVSVGMFQGVPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  D D N VMT +G  VEVQG+AE ATFS+    A+L LA+  I  L++ QK  I
Sbjct: 179 EDSGCDTDMNVVMTGAGGFVEVQGTAEGATFSRAELNALLELAESGIRRLVEAQKAAI 236


>gi|29831713|ref|NP_826347.1| ribonuclease PH [Streptomyces avermitilis MA-4680]
 gi|61216038|sp|Q82D17|RNPH_STRAW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|29608829|dbj|BAC72882.1| putative ribonuclease PH [Streptomyces avermitilis MA-4680]
          Length = 244

 Score =  344 bits (884), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 113/238 (47%), Positives = 153/238 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R I++ R  SK+AEGS LV FGDT +  TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPEQLRPITIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGRKLVKAGRKPLTGTVSAVSVGIVGGVPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   D D N V T  G  VEVQG+AE   F +    A+L+LA     +L  +Q+  + 
Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLAVSGCDELAVIQRAALE 240


>gi|229593356|ref|YP_002875475.1| ribonuclease PH [Pseudomonas fluorescens SBW25]
 gi|259494125|sp|C3K479|RNPH_PSEFS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|229365222|emb|CAY53520.1| ribonuclease PH [Pseudomonas fluorescens SBW25]
          Length = 240

 Score =  344 bits (884), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 163/239 (68%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  +       +    LK  +AA+S GM  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALVDAL-KVIKKRGGLKAGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT +G  +EVQG+AE A F      AML LA+  + ++ +LQ   +++
Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPADLNAMLALAQKGMTEIFELQNAALAD 240


>gi|115522381|ref|YP_779292.1| ribonuclease PH [Rhodopseudomonas palustris BisA53]
 gi|115516328|gb|ABJ04312.1| RNAse PH [Rhodopseudomonas palustris BisA53]
          Length = 243

 Score =  344 bits (883), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 139/239 (58%), Positives = 182/239 (76%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R +SL R V KYAEGSCLVKFGDTH+L TA+LEE++P W++    GW+T
Sbjct: 7   MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTASLEERLPPWLKGQGRGWVT 66

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +RE+ +G+Q GR+ EIQR+IGR+LR+ VDL A+G RQI +DCDV+Q
Sbjct: 67  AEYGMLPRATHERTRRESAAGKQSGRTVEIQRLIGRSLRASVDLEAMGERQITVDCDVLQ 126

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVAL DCL  M+  +     ++VL+ +VAAISCG+  G P++DLDY 
Sbjct: 127 ADGGTRTAAITGAWVALADCLAWMK--ARNMIKAKVLRDNVAAISCGIYNGTPVLDLDYA 184

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFVMT  G I+EVQG+AE+  FSQD F A++ LA+  +A L+ LQ   ++
Sbjct: 185 EDSEAETDANFVMTGDGRIIEVQGTAEKTPFSQDEFLALMALAQKGVARLVDLQNMAVA 243


>gi|90421849|ref|YP_530219.1| ribonuclease PH [Rhodopseudomonas palustris BisB18]
 gi|122477603|sp|Q21CI6|RNPH_RHOPB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|90103863|gb|ABD85900.1| RNAse PH [Rhodopseudomonas palustris BisB18]
          Length = 239

 Score =  344 bits (883), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 142/239 (59%), Positives = 182/239 (76%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R +SL R V KYAEGSC+VKFGDTH+L TATLE+++P W++    GW+T
Sbjct: 1   MRPSRRAPDELRAVSLERGVVKYAEGSCMVKFGDTHVLVTATLEDRLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+ EIQR+IGR+LR+ VDL ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATLERTRREASAGKQNGRTVEIQRLIGRSLRATVDLQALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DC+  M+  +     + VL+ +VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALADCIGWMKTRNMFKGTAPVLRDNVAAISCGIYNGTPVLDLDYA 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D DANFVMT  G I+EVQG+AE+  FSQD F A++ LAK  +A L+ LQK  ++
Sbjct: 181 EDSEADTDANFVMTGDGRIIEVQGTAEKTPFSQDEFLALMALAKKGVARLVDLQKMAVA 239


>gi|21232680|ref|NP_638597.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66767292|ref|YP_242054.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. 8004]
 gi|188990329|ref|YP_001902339.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. B100]
 gi|24638173|sp|Q8P5T5|RNPH_XANCP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|81306727|sp|Q4UY39|RNPH_XANC8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736950|sp|B0RP96|RNPH_XANCB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|21114489|gb|AAM42521.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66572624|gb|AAY48034.1| ribonuclease PH [Xanthomonas campestris pv. campestris str. 8004]
 gi|167732089|emb|CAP50281.1| ribonuclease PH [Xanthomonas campestris pv. campestris]
          Length = 241

 Score =  344 bits (883), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 164/239 (68%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R + + R  +++AEGS LV FGDT +L TA++E +VP ++R    GW+TA
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPNFLRGKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +    +  +    L G VAA+S G+  G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  + +L +LQ+  ++ 
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGVGELFELQRAALAG 241


>gi|302560437|ref|ZP_07312779.1| ribonuclease PH [Streptomyces griseoflavus Tu4000]
 gi|302478055|gb|EFL41148.1| ribonuclease PH [Streptomyces griseoflavus Tu4000]
          Length = 245

 Score =  344 bits (883), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 118/237 (49%), Positives = 159/237 (67%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R +S+ R  SK+AEGS LV FGDT +L TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTKVLCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+V+D  ALG   +++DCDV+QA
Sbjct: 63  EYAMLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +Q  +D        + L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVQWAQDKKLVRAGRRPLTGTVSAVSVGIVGGVPLLDLRYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   D D N V T  G  VEVQG+AE   F++D   A+L+LA    A+L   Q+  +
Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVTGCAELAAAQRKAL 239


>gi|121534591|ref|ZP_01666413.1| ribonuclease PH [Thermosinus carboxydivorans Nor1]
 gi|121306843|gb|EAX47763.1| ribonuclease PH [Thermosinus carboxydivorans Nor1]
          Length = 246

 Score =  344 bits (883), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 126/240 (52%), Positives = 162/240 (67%), Gaps = 3/240 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GRQ   +R IS+TR   K+AEGS  ++ GDT ++  ATLE+KVP +++ T  GWIT
Sbjct: 1   MRIDGRQAADLRPISITRHYLKHAEGSVFIEVGDTKVICAATLEDKVPPFLKGTGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY +LPRST  R  REA  GR  GR+ EIQR+IGRALRSVVDL ALG R I IDCDVIQ
Sbjct: 61  AEYSLLPRSTQTRNIREAAKGRLTGRTHEIQRLIGRALRSVVDLKALGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D +  +     K      +K  +AA+S G++ G  ++DL Y 
Sbjct: 121 ADGGTRTASITGAFVALVDAVNTIYTDPEK---PFPVKDFLAAVSVGVVDGAAVLDLCYA 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VMT +G +VEVQG+ E+  F++     ML L +  IA+LI  QK+V+  
Sbjct: 178 EDSAAVVDMNIVMTGNGDLVEVQGTGEKHPFTKAQLAEMLALGERGIAELIDYQKEVLGE 237


>gi|241667227|ref|ZP_04754805.1| tRNA nucleotidyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254875778|ref|ZP_05248488.1| ribonuclease PH [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254841799|gb|EET20213.1| ribonuclease PH [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 235

 Score =  344 bits (883), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 115/232 (49%), Positives = 161/232 (69%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R + +T   +K+AEGS L++FGDT +L TA++   VP + +++  GW+T
Sbjct: 1   MRPSGRNNDQLRTLKVTHNFTKHAEGSVLIEFGDTKVLCTASVVAGVPRFKKDSGEGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGRALR+ VDL+ +G   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTKIGENTIKVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +A+ D + +M+      + +  L   VAAIS G+    P++DLDY 
Sbjct: 121 ADGGTRTASITGASLAIRDAIDYMKQNGMLDEQTNPLMSQVAAISVGIYNNEPVLDLDYD 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           EDS  + D N VM  +G ++E+QG+AE   FS++ F  ML LAK  I ++ +
Sbjct: 181 EDSNAETDMNVVMNSNGGMIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFE 232


>gi|161525573|ref|YP_001580585.1| ribonuclease PH [Burkholderia multivorans ATCC 17616]
 gi|189349699|ref|YP_001945327.1| ribonuclease PH [Burkholderia multivorans ATCC 17616]
 gi|226736894|sp|A9AEQ7|RNPH_BURM1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|160343002|gb|ABX16088.1| ribonuclease PH [Burkholderia multivorans ATCC 17616]
 gi|189333721|dbj|BAG42791.1| ribonuclease PH [Burkholderia multivorans ATCC 17616]
          Length = 246

 Score =  344 bits (883), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 129/238 (54%), Positives = 170/238 (71%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ +++R+++LTR  +K+AEGS LV+FGDT ++ TA++ E+VP ++R    GW+TA
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R I +DCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHLDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +            +  HVAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSTLLAAGKL--ERSPIVDHVAAISVGVYEGTPVLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMT +G  VEVQG+AE   FS+    A+L+LA+  I  L++LQKDV+ 
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQSGIGTLVQLQKDVLG 242


>gi|167837502|ref|ZP_02464385.1| ribonuclease PH [Burkholderia thailandensis MSMB43]
          Length = 243

 Score =  344 bits (883), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 125/238 (52%), Positives = 170/238 (71%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ +Q+R++ +TR  +K+AEGS LV+FGDT ++ TA++ E+VP ++R    GW+TA
Sbjct: 7   RPSGRRADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +            +  +VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVTQLVAAGKI--ARSPITDYVAAISVGVFGGAPVLDLDYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMT +G  VEVQG+AE A FS+    A+L+LA+  I +L++LQ+  + 
Sbjct: 185 DSACDTDMNIVMTGAGGFVEVQGTAEGAPFSRAEMNALLDLAQAGIGELVRLQRAALE 242


>gi|260913198|ref|ZP_05919680.1| tRNA nucleotidyltransferase [Pasteurella dagmatis ATCC 43325]
 gi|260632785|gb|EEX50954.1| tRNA nucleotidyltransferase [Pasteurella dagmatis ATCC 43325]
          Length = 238

 Score =  344 bits (883), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q R+I +TR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GW+T
Sbjct: 1   MRPNERANHQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEESVPRFLKGQNQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERSVTLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +   +N    +  +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALCDAINGL--VANGTLKTNPIKGLVAAISVGIVDGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G ++EVQG+AE   F+ D    +L+LAK     +   Q+  ++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFNHDELLTLLDLAKQGCETIFVAQRQALA 237


>gi|92115783|ref|YP_575512.1| ribonuclease PH [Nitrobacter hamburgensis X14]
 gi|122418904|sp|Q1QRU5|RNPH_NITHX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|91798677|gb|ABE61052.1| RNAse PH [Nitrobacter hamburgensis X14]
          Length = 237

 Score =  344 bits (883), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 144/239 (60%), Positives = 183/239 (76%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R +SL R V KYAEGSC+VKFGDTH+L TATLEE++P W++    GW+T
Sbjct: 1   MRPSRRAPDELRAVSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+QGGR+ EIQR+IGR+LR+ VDL ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATLERTRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DC+  M+  +     + VL+ +VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALADCIGWMK--ARNMIKTSVLRDNVAAVSCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D DANFVMT  G I+EVQG+AE+  FSQD F A+L LAK  +A L+ LQK  ++
Sbjct: 179 EDSEADTDANFVMTGDGRIIEVQGTAEKTPFSQDEFLALLALAKKGVARLVDLQKMAVA 237


>gi|226941559|ref|YP_002796633.1| RnpH [Laribacter hongkongensis HLHK9]
 gi|254808590|sp|C1DCK5|RNPH_LARHH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226716486|gb|ACO75624.1| RnpH [Laribacter hongkongensis HLHK9]
          Length = 238

 Score =  344 bits (883), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 125/237 (52%), Positives = 169/237 (71%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R +   R  +++AEGS LV+FGDT ++ TAT+EE VP +++    GW+T
Sbjct: 1   MRPSQRAASELRPVRFIRHYTRHAEGSVLVEFGDTKVICTATVEESVPGFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA SG+Q GR+QEIQR+IGR+LR+VVDL  LG RQI++DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMRREAASGKQSGRTQEIQRLIGRSLRAVVDLQKLGERQIVVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GAWVAL D +  +   +        L+ HVAA+S GM+ G P++DLDY 
Sbjct: 121 ADGGTRTASISGAWVALADAIDGL--MAKGLLTENPLRDHVAAVSVGMVDGQPVLDLDYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS  D D N VMT  G  VE+QG+AE   FS++   A+L LA + I  ++ LQ+  
Sbjct: 179 EDSGCDTDMNVVMTGQGGFVEIQGTAEGVPFSREDMQALLALADEGIRAIVGLQQAA 235


>gi|297160096|gb|ADI09808.1| ribonuclease PH [Streptomyces bingchenggensis BCW-1]
          Length = 243

 Score =  344 bits (883), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 113/240 (47%), Positives = 158/240 (65%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R +++ R  SK+AEGS LV FGDT +L TA+  E VP W + +  GW+TA
Sbjct: 3   RIDGRTPDQLRPVTIERAWSKHAEGSVLVSFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+V+D  ALG   +++DCDV+QA
Sbjct: 63  EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D L   +         Q L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADALTWGQGKKLIKAGRQPLTGTVSAVSVGIVGGIPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D   + D N V T  G  VEVQG+AE   F+++    +L+LA     +L ++Q+  ++ E
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGEPFAREELNGLLDLAVAGCGELAEIQRAALAGE 242


>gi|302534682|ref|ZP_07287024.1| ribonuclease PH [Streptomyces sp. C]
 gi|302443577|gb|EFL15393.1| ribonuclease PH [Streptomyces sp. C]
          Length = 244

 Score =  344 bits (883), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 115/241 (47%), Positives = 154/241 (63%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS L+ FGDT +  TA+  E VP W + +  GW+T+
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASFTEGVPRWRKGSGEGWVTS 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  RE+V G+ GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L G VAA+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAIAWGQGKKLIKAGRKPLTGTVAAVSVGIVDGVPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D   + D N V T  G  VEVQG+AE   F +    A+L+LA    ADL  LQ   +  +
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGEPFDRKELNALLDLAAGGCADLEALQLGALDLQ 242

Query: 242 V 242
           V
Sbjct: 243 V 243


>gi|253997760|ref|YP_003049823.1| ribonuclease PH [Methylovorus sp. SIP3-4]
 gi|253984439|gb|ACT49296.1| ribonuclease PH [Methylovorus sp. SIP3-4]
          Length = 238

 Score =  344 bits (883), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 129/239 (53%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R+ +Q+R I + R  +K+AEGS LVKFGDTH+L TA+++EKVP ++R    GW+T
Sbjct: 1   MRPSQRETHQLRPIEIIRHYTKHAEGSVLVKFGDTHVLCTASVDEKVPGFLRGKNQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R+ REA  G+Q GR+QEIQR+IGR+LR+++DL  LG R I IDCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMDREAARGKQSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VALHD +  +   +        L+  VAA+S G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAYVALHDAISRL--LAQGLISESPLRDSVAAVSVGVYQGTPVLDLDYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT SG  VE+QG+AE   F +     ML+LA   I +L  LQ   + 
Sbjct: 179 EDSDCDTDMNVVMTGSGGYVEIQGTAEGVPFQRADMDRMLDLAAAGIRELTSLQAKALG 237


>gi|27375785|ref|NP_767314.1| ribonuclease PH [Bradyrhizobium japonicum USDA 110]
 gi|61216053|sp|Q89WK4|RNPH_BRAJA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|27348923|dbj|BAC45939.1| Ribonuclease PH [Bradyrhizobium japonicum USDA 110]
          Length = 237

 Score =  344 bits (883), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 137/239 (57%), Positives = 181/239 (75%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R ++L R V KYAEGSCLVKFGDTH+L TATLE+++P W++    GW+T
Sbjct: 1   MRPSRRAPDELRPVTLERGVVKYAEGSCLVKFGDTHVLVTATLEDRLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+ EIQR+IGR+LR++++L ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATSERTRREASAGKQSGRTVEIQRLIGRSLRTIINLEALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DC+  M+  +     + VL+ +VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALADCVNWMK--ARNMVKANVLRDNVAAISCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    DANFVMT  G I+EVQG+AER  F+QD   A++ LA+  IA L+ LQK  ++
Sbjct: 179 EDSEAQTDANFVMTGDGRIIEVQGTAEREPFTQDELLALMALAQKGIARLVDLQKLAVA 237


>gi|124515183|gb|EAY56694.1| ribonuclease PH [Leptospirillum rubarum]
          Length = 245

 Score =  344 bits (883), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 116/239 (48%), Positives = 160/239 (66%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+   +R +S+   V+ YAEGS LV+ G+T +L TA++EEKVP ++++   GW+T
Sbjct: 2   MRSDGRKPENLRSLSIKTGVNLYAEGSVLVEMGNTKVLCTASVEEKVPPFLKDQGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LRSVVD   +G R I IDCDV+Q
Sbjct: 62  AEYGMLPRSTHERNSREAAKGKQSGRTQEIQRLIGRSLRSVVDTKKMGVRTITIDCDVLQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+G +VA+      +            ++ ++AA+S G++ G P++DL Y 
Sbjct: 122 ADGGTRTASISGGFVAMCLAFSELHK--RGLMPEWPVREYLAAVSVGVVEGEPVLDLCYT 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT+SGH VE+QG+AE   FS+     +L L +  I ++I  QK V S
Sbjct: 180 EDSGAETDMNLVMTESGHFVEIQGTAEETPFSRQTLDTLLGLGEKGIREIIVCQKSVFS 238


>gi|77361698|ref|YP_341273.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas
           haloplanktis TAC125]
 gi|123588968|sp|Q3IJI0|RNPH_PSEHT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|76876609|emb|CAI87831.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 237

 Score =  344 bits (883), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 124/239 (51%), Positives = 161/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  NQ+R ++ TR  + +AEGS LV+FG+T +L TAT+E  VP +++    GWI 
Sbjct: 1   MRPSERTANQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWIN 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I IDCDVIQ
Sbjct: 61  AEYGMLPRATHTRNAREAARGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L HM   +     S  LK  +AAIS G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASISGACVALVDALTHMR--AKGMINSNPLKYMIAAISVGIYKGQAISDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N ++T++G I+E+QG+AE   FS D    +L LAK  I ++I +QK  ++
Sbjct: 179 EDSAAETDMNVILTETGKIIEIQGTAEGEPFSFDELDELLTLAKHSIREIIDVQKQALA 237


>gi|258620570|ref|ZP_05715607.1| ribonuclease PH [Vibrio mimicus VM573]
 gi|262172697|ref|ZP_06040375.1| ribonuclease PH [Vibrio mimicus MB-451]
 gi|258587085|gb|EEW11797.1| ribonuclease PH [Vibrio mimicus VM573]
 gi|261893773|gb|EEY39759.1| ribonuclease PH [Vibrio mimicus MB-451]
          Length = 238

 Score =  343 bits (882), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 120/240 (50%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 1   MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+    I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMSEIMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D   H+       +    +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASITGASVALADAFAHLMAKGQLKK--NPMKGHVAAVSVGILGEDVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK  + +
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASLLD 238


>gi|302545021|ref|ZP_07297363.1| tRNA nucleotidyltransferase [Streptomyces hygroscopicus ATCC 53653]
 gi|302462639|gb|EFL25732.1| tRNA nucleotidyltransferase [Streptomyces himastatinicus ATCC
           53653]
          Length = 241

 Score =  343 bits (882), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 111/238 (46%), Positives = 156/238 (65%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R +++ R  SK+AEGS LV FGDT +L TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPDQLRPVTIERGWSKHAEGSVLVSFGDTRVLCTASVNEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+V+D  ALG   +++DCDV+QA
Sbjct: 63  EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         Q L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAITWAQGKKLIKAGRQPLTGTVSAVSVGIVGGVPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   + D N V T  G  VEVQG+AE   F+++   ++L+LA     +L   Q+  + 
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGEPFAREELNSLLDLAVGGCVELAGNQRAALG 240


>gi|145639813|ref|ZP_01795414.1| ribonuclease PH [Haemophilus influenzae PittII]
 gi|145271031|gb|EDK10947.1| ribonuclease PH [Haemophilus influenzae PittII]
 gi|309750310|gb|ADO80294.1| Ribonuclease PH [Haemophilus influenzae R2866]
          Length = 238

 Score =  343 bits (882), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ R+I +TR  +K+AEGS LV+FGDT +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  + +  N    +  +KG V+AIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALCDAINGLIE--NGTLKTNPIKGLVSAISVGIVDGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G ++EVQG+AE   FS +    +L+LAK     +   Q++ + 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQRESLG 237


>gi|37528679|ref|NP_932024.1| ribonuclease PH [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|61215997|sp|Q7MAX2|RNPH_PHOLL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|36788118|emb|CAE17242.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 242

 Score =  343 bits (882), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 119/240 (49%), Positives = 158/240 (65%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R I++TR  +K+AEGS LV+FGDT +L  A++EE VP +++    GW+T
Sbjct: 1   MRPTGRAAEQVRPITITRHYTKHAEGSVLVEFGDTKVLCNASVEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHTRNAREAARGKQGGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  + +          LK  VAA+S G++ G    DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALNKIVEAGKL--KESPLKSMVAAVSVGIVDGEGRCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS D   ++L LAK  + D+   Q++ +  
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELLSLLALAKGGLEDIFDAQRNALKQ 238


>gi|261491672|ref|ZP_05988254.1| tRNA nucleotidyltransferase [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261494209|ref|ZP_05990709.1| tRNA nucleotidyltransferase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310112|gb|EEY11315.1| tRNA nucleotidyltransferase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261312687|gb|EEY13808.1| tRNA nucleotidyltransferase [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 238

 Score =  343 bits (882), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 121/240 (50%), Positives = 170/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  NQ+REI +TR  ++YAEGS L++FG+T +L  AT+EE VP +++  + GW+T
Sbjct: 1   MRPNNRANNQVREIKITRNYTRYAEGSVLIEFGETKVLCNATVEESVPRFLKGQQQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL+D +  +   ++    +  +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALYDAMNKL--VADGTLKTNPMKGLVAAISVGIVAGEAVCDLEYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G +VEVQG+AE   FS      +L+LAK  I+ L++ Q+  ++ 
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHQELLTLLDLAKQGISQLVEAQRKALAE 238


>gi|297199995|ref|ZP_06917392.1| ribonuclease PH [Streptomyces sviceus ATCC 29083]
 gi|197710467|gb|EDY54501.1| ribonuclease PH [Streptomyces sviceus ATCC 29083]
          Length = 245

 Score =  343 bits (882), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 112/237 (47%), Positives = 155/237 (65%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS LV FGDT +  TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGKKLIKAGRRPLTGTVSAVSVGIVGGVPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   + D N V T  G  VEVQG+AE   F++D   ++L+LA    ++L  LQ   +
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEAEPFARDELNSLLDLAVLGCSELTVLQSKAL 239


>gi|307256075|ref|ZP_07537863.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306865497|gb|EFM97392.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 238

 Score =  343 bits (882), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ+R + +TR  ++YAEGS LV+FG+T +L  AT+EE VP +++  + GW+T
Sbjct: 1   MRPNNRKLNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VALHD +  +   ++       +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALHDAMSKL--VADGVLKENPMKGLVAAISVGIVDGNAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G +VEVQG+AE   FS      +L+LA   I  L+  Q+  ++
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALA 237


>gi|315497101|ref|YP_004085905.1| ribonuclease ph [Asticcacaulis excentricus CB 48]
 gi|315415113|gb|ADU11754.1| ribonuclease PH [Asticcacaulis excentricus CB 48]
          Length = 250

 Score =  343 bits (882), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 122/237 (51%), Positives = 167/237 (70%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R S RQ +Q+R+++L   V++YAEGSCL+  G T +L TA++E+ VP +++    GW+T
Sbjct: 13  FRPSNRQADQLRKVTLETGVTRYAEGSCLITVGHTKVLATASVEQGVPPFLKGKGQGWVT 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQ
Sbjct: 73  AEYGMLPRSTHTRSRREAAAGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVIQ 132

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+IT AWVAL      + +   K   +  +   VAA+SCG+    P++DLDY 
Sbjct: 133 ADGGTRCASITAAWVALSLACDKLLE--QKLISASPIIDQVAAVSCGVFENVPVLDLDYD 190

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDST + D+NFV+T SGHIVE+Q + E+  FS+D F  + +LA     +L  LQ++ 
Sbjct: 191 EDSTAETDSNFVLTGSGHIVEIQATGEKRGFSRDEFNTLFDLATQGATELFALQREA 247


>gi|307249253|ref|ZP_07531250.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306858777|gb|EFM90836.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
          Length = 238

 Score =  343 bits (882), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 123/239 (51%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ+R + +TR  ++YAEGS LV+FG+T +L  AT+EE VP +++  + GW+T
Sbjct: 1   MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VALHD +  +   ++       +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALHDAMSKL--VADGVLKENPMKGLVAAISVGIVNGNAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G +VEVQG+AE   FS      +L+LA   I  L+  Q+  ++
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALA 237


>gi|91787235|ref|YP_548187.1| ribonuclease PH [Polaromonas sp. JS666]
 gi|91696460|gb|ABE43289.1| RNAse PH [Polaromonas sp. JS666]
          Length = 243

 Score =  343 bits (882), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 125/241 (51%), Positives = 168/241 (69%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+  R  + +R + +TR  + YAEGS L++FG T +L TA++EEKVP   + +  GW+T
Sbjct: 5   VRVDARAADALRPVRITRHYTAYAEGSVLIEFGGTKVLCTASVEEKVPGHKKGSGEGWVT 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR++RSV DL  LG R I +DCDVIQ
Sbjct: 65  AEYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSMRSVFDLKKLGERTIYLDCDVIQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA+ D +  +       +    +  HVAAIS G++ G P++DL+Y 
Sbjct: 125 ADGGTRTASITGAFVAVQDAVNQLLALGKLQET--PILDHVAAISVGIVQGTPLLDLEYT 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT +G+ VEVQG+AE A FS+    A+L LA+  IA+L+ LQK  +SN
Sbjct: 183 EDSACDTDMNVVMTGAGNYVEVQGTAEGAAFSRKEMDALLVLAEKGIAELVGLQKKSLSN 242

Query: 241 E 241
           E
Sbjct: 243 E 243


>gi|163802281|ref|ZP_02196176.1| ribonuclease PH [Vibrio sp. AND4]
 gi|159174086|gb|EDP58896.1| ribonuclease PH [Vibrio sp. AND4]
          Length = 238

 Score =  343 bits (882), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA SG+QGGR+ EIQR+I R+LR+VVDL A+G   + +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMVTVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ D       +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKL--KANPMKGHVAAVSVGLLGEDVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +   A+L  AK  I +++  QK  + N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLMALLESAKIGITEIVAAQKAALEN 238


>gi|322383243|ref|ZP_08057054.1| ribonuclease PH-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152512|gb|EFX45298.1| ribonuclease PH-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 251

 Score =  343 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 117/239 (48%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GRQ N++R + +T   +K+AEGS L++ GDT ++ TAT+EE+VP +++N   GW+T
Sbjct: 1   MRADGRQPNELRPVRITPNYNKHAEGSVLIEVGDTKVICTATIEERVPPFLKNEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +REA  G+ GGR+ EIQR+IGRALRSV++L ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATQVRNQREASKGKLGGRTMEIQRLIGRALRSVINLEALGERSITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITGA++A+   +  + +  +K      +  ++A++S G++ G  ++DL Y 
Sbjct: 121 ADGGTRTTSITGAFIAMSLAIHKLME--DKKITVNPITDYLASVSVGIVQGETLLDLMYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD N VMT  GH VEVQG+ E + FS+D    ML LA++ I  LI+LQ++ + 
Sbjct: 179 EDSQAHVDMNVVMTGRGHFVEVQGTGEESPFSKDDLDRMLGLAEEGILRLIELQREALG 237


>gi|114321593|ref|YP_743276.1| ribonuclease PH [Alkalilimnicola ehrlichii MLHE-1]
 gi|122310932|sp|Q0A5V1|RNPH_ALHEH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|114227987|gb|ABI57786.1| RNAse PH [Alkalilimnicola ehrlichii MLHE-1]
          Length = 238

 Score =  343 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 125/239 (52%), Positives = 168/239 (70%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +++R + LTR  +++AEGS LV+FGDT +L TA++EE+VP W+RN   GW+T
Sbjct: 1   MRPSGRKPDELRPVRLTRHYTRHAEGSVLVEFGDTRVLCTASVEERVPPWLRNQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG R  REA  G+Q GR+ EIQR+IGRALR+ VDL ALG R++++DCDV+Q
Sbjct: 61  AEYGMLPRSTGTRNDREAARGKQQGRTIEIQRLIGRALRAAVDLEALGERRVVLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D    +            + G VAA+S G+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGAYVALVDACNLLRKEGRI--RRSPIFGQVAAVSVGIYQGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM ++G  +E+QG+AE   F +D   AM  LA+  +A LI+ Q+  + 
Sbjct: 179 EDSEAETDMNVVMNEAGGFIELQGTAEGHAFRRDELNAMTELAELGVAQLIETQRQALE 237


>gi|313199824|ref|YP_004038482.1| ribonuclease ph [Methylovorus sp. MP688]
 gi|312439140|gb|ADQ83246.1| ribonuclease PH [Methylovorus sp. MP688]
          Length = 238

 Score =  343 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 129/239 (53%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R+ +Q+R I + R  +K+AEGS LVKFGDTH+L TA+++EKVP ++R    GW+T
Sbjct: 1   MRPSQRETHQLRPIEIIRHYTKHAEGSVLVKFGDTHVLCTASVDEKVPGFLRGKNQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R+ REA  G+Q GR+QEIQR+IGR+LR+++DL  LG R I IDCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMDREAARGKQSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VALHD +  +   +        L   VAA+S G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAYVALHDAISRL--LAQGLISESPLLDSVAAVSVGVYQGTPVLDLDYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT SG  VE+QG+AE   F +     ML+LA   I +L  LQ   + 
Sbjct: 179 EDSDCDTDMNVVMTGSGGYVEIQGTAEGVPFQRADMDRMLDLAAAGIRELTTLQTKALG 237


>gi|294501440|ref|YP_003565140.1| ribonuclease PH [Bacillus megaterium QM B1551]
 gi|294351377|gb|ADE71706.1| ribonuclease PH [Bacillus megaterium QM B1551]
          Length = 248

 Score =  343 bits (881), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 113/238 (47%), Positives = 163/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MRL GR+ N++R +SL     K+ EGS L+  GDT ++ TA+++++VP ++R    GWIT
Sbjct: 1   MRLDGREFNELRPVSLHTSYLKHPEGSVLISVGDTKVICTASIDDRVPPFMRGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALRSVVDL  +G + I IDCDVIQ
Sbjct: 61  AEYSMLPRATAQRNIRESSKGKVTGRTMEIQRLIGRALRSVVDLEKVGEKTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA+      + + +   ++   ++ ++AA S G+     I+DL+Y 
Sbjct: 121 ADGGTRTASITGAFVAMVLAFGKLVEENKLTEI--PIRDYLAATSVGIHGENSILDLNYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDST +VD N VMT SG  VE+QG+ E +TFS++    +L+L +  +  LI+ QK+V+
Sbjct: 179 EDSTAEVDMNIVMTGSGQFVELQGTGEESTFSREQLNHLLDLGEKGVYQLIEQQKEVL 236


>gi|254784432|ref|YP_003071860.1| ribonuclease PH [Teredinibacter turnerae T7901]
 gi|259494129|sp|C5BLF9|RNPH_TERTT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|237687110|gb|ACR14374.1| tRNA nucleotidyltransferase [Teredinibacter turnerae T7901]
          Length = 239

 Score =  343 bits (881), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 130/240 (54%), Positives = 176/240 (73%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R SGR  NQ+R+IS+TR  +++AEGS LV FGDT ++ TAT+EE VP +++    GW+T
Sbjct: 2   LRPSGRAANQLRDISITRHYTRHAEGSVLVCFGDTKVICTATVEEGVPRFLKGEGQGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R+ REA  G+QGGR+ EIQR+IGR+LR+ VDL+ LG   I IDCDVIQ
Sbjct: 62  AEYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLTLLGEHSITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L+ M+    K   +  L+  VA++S GM  G  ++DLDY 
Sbjct: 122 ADGGTRTASITGACVALVDALRFMQRS--KMIQTDPLRHLVASVSVGMYQGEAVLDLDYP 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE+A FS+D F  M  LAK+ I++L + Q+  +++
Sbjct: 180 EDSNADTDMNMVMTEQGGLIEIQGTAEQAPFSEDEFIQMFTLAKEGISELCEFQRQSLTD 239


>gi|34499302|ref|NP_903517.1| tRNA nucleotidyltransferase [Chromobacterium violaceum ATCC 12472]
 gi|61215999|sp|Q7MBD4|RNPH_CHRVO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|34105153|gb|AAQ61509.1| tRNA nucleotidyltransferase [Chromobacterium violaceum ATCC 12472]
          Length = 238

 Score =  343 bits (881), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 129/239 (53%), Positives = 174/239 (72%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  + MR + LTR  +K+AEGS LV+FGDT ++ TA++EE VP +++    GW+T
Sbjct: 1   MRPSQRSADAMRVVRLTRSYTKHAEGSVLVEFGDTKVICTASVEETVPSFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R++RE+ +G+Q GR+QEIQR+IGR+LR+V DL+ LG RQI+IDCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMRRESAAGKQSGRTQEIQRLIGRSLRAVTDLAKLGERQIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D ++ + D          L+  VAA+S G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAYVALADAIRGLIDAGKLSAT--PLRDQVAAVSVGVYKGQPVLDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT SG  VEVQG+AE   FS++   AML LA+  IA+L+  Q+  ++
Sbjct: 179 EDSDCETDMNVVMTGSGRFVEVQGTAEGEPFSEEEMAAMLGLARKGIAELLAHQRQALN 237


>gi|320539880|ref|ZP_08039539.1| defective ribonuclease PH [Serratia symbiotica str. Tucson]
 gi|320030066|gb|EFW12086.1| defective ribonuclease PH [Serratia symbiotica str. Tucson]
          Length = 238

 Score =  343 bits (881), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 123/240 (51%), Positives = 162/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR    +R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPVGRAPQHVRPLTLTRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   II+DCDV+Q
Sbjct: 61  AEYSMLPRSTHSRNVREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTIILDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   +N    +  +KG VAA+S G+L G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALIDALNAL--VANGKLKANPMKGLVAAVSVGILNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS D   A+L LA+  I  + + QK  ++ 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELMALLTLARGGIETIFQAQKAALAG 238


>gi|145297207|ref|YP_001140048.1| ribonuclease PH [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142849979|gb|ABO88300.1| ribonuclease PH [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 240

 Score =  343 bits (881), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 121/238 (50%), Positives = 162/238 (68%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R S R   Q+R +++TR  +K+AEGS LV+FG+T +L TA+++  VP +++    GW+TA
Sbjct: 3   RPSDRSAAQLRPVTITRNFTKHAEGSVLVEFGNTRVLCTASVDTSVPRFLKGKGQGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST +R+ REA +G+Q GR+ EI R+I R+LR+ VDL+ALG   I +DCDV+QA
Sbjct: 63  EYGMLPRSTHSRMNREAAAGKQSGRTLEISRLIARSLRAAVDLTALGEHSITVDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  M +          LK  +AA+S GM  G  I DL+Y E
Sbjct: 123 DGGTRTASITGACVALVDALNWMVE--KGMIKQSPLKQMIAAVSVGMYQGEAICDLEYIE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  + D N VMT+ G I+EVQG+AE   F+ +   AML LAK  I ++I LQK  +S
Sbjct: 181 DSAAETDMNVVMTEDGRIIEVQGTAEAEPFTHEELLAMLGLAKGGIEEIIALQKQSLS 238


>gi|260779667|ref|ZP_05888557.1| ribonuclease PH [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604476|gb|EEX30780.1| ribonuclease PH [Vibrio coralliilyticus ATCC BAA-450]
          Length = 238

 Score =  343 bits (881), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + RQ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRQADQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G   + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ +     +    +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLIENGKLKK--NPMKGHVAAVSVGILGEDVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++EVQG+AE   F+      +L  A   I +++  QK  + N
Sbjct: 179 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGITEIVAAQKAALEN 238


>gi|221201201|ref|ZP_03574241.1| ribonuclease PH [Burkholderia multivorans CGD2M]
 gi|221206345|ref|ZP_03579358.1| ribonuclease PH [Burkholderia multivorans CGD2]
 gi|221213625|ref|ZP_03586599.1| ribonuclease PH [Burkholderia multivorans CGD1]
 gi|221166414|gb|EED98886.1| ribonuclease PH [Burkholderia multivorans CGD1]
 gi|221173654|gb|EEE06088.1| ribonuclease PH [Burkholderia multivorans CGD2]
 gi|221179051|gb|EEE11458.1| ribonuclease PH [Burkholderia multivorans CGD2M]
          Length = 246

 Score =  343 bits (881), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 129/238 (54%), Positives = 170/238 (71%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ +++R+++LTR  +K+AEGS LV+FGDT ++ TA++ E+VP ++R    GW+TA
Sbjct: 7   RPSGRRADELRKVALTRHYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRERGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R I +DCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLEALGPRTIHLDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +            +  HVAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVSTLLAAGKL--ERSPIVDHVAAISVGVYEGTPVLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMT +G  VEVQG+AE   FS+    A+L+LA+  I  L++LQKDV+ 
Sbjct: 185 DSRCDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMDALLDLAQSGIGTLVQLQKDVLG 242


>gi|330831556|ref|YP_004394508.1| RNase PH [Aeromonas veronii B565]
 gi|328806692|gb|AEB51891.1| RNase PH [Aeromonas veronii B565]
          Length = 238

 Score =  343 bits (881), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 123/238 (51%), Positives = 162/238 (68%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R S R   Q+R +++TR  +K+AEGS LV+FG+T +L TA+++  VP +++    GW+TA
Sbjct: 3   RPSDRSAAQLRPVTITRNFTKHAEGSVLVEFGNTRVLCTASVDTSVPRFLKGKNQGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST +R+ REA SG+Q GR+ EI R+I R+LR+ VDL+ALG   I +DCDV+QA
Sbjct: 63  EYGMLPRSTHSRMNREAASGKQSGRTLEISRLIARSLRAAVDLTALGEHSITVDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  M +          LK  +AA+S GM  G  I DL+Y E
Sbjct: 123 DGGTRTASITGACVALVDALNWMVE--KGMIKQSPLKQMIAAVSVGMYQGEAICDLEYIE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  + D N VMT+ G I+EVQG+AE   F+ +    ML LAK  IAD+I LQK  +S
Sbjct: 181 DSAAETDMNVVMTEDGRIIEVQGTAEAEPFTHEELLEMLALAKGGIADIIALQKQSLS 238


>gi|52842229|ref|YP_096028.1| ribonuclease PH [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|54294910|ref|YP_127325.1| ribonuclease PH [Legionella pneumophila str. Lens]
 gi|54297939|ref|YP_124308.1| ribonuclease PH [Legionella pneumophila str. Paris]
 gi|21759423|sp|Q9X528|RNPH_LEGPN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61215813|sp|Q5WV28|RNPH_LEGPL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61215816|sp|Q5X3P0|RNPH_LEGPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61215829|sp|Q5ZTZ6|RNPH_LEGPH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|4704704|gb|AAD28218.1|AF120720_1 ribonuclease PH [Legionella pneumophila 130b]
 gi|52629340|gb|AAU28081.1| ribonuclease PH [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|53751724|emb|CAH13146.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Legionella pneumophila str. Paris]
 gi|53754742|emb|CAH16229.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Legionella pneumophila str. Lens]
 gi|307610737|emb|CBX00344.1| ribonuclease PH [Legionella pneumophila 130b]
          Length = 235

 Score =  343 bits (881), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 115/237 (48%), Positives = 164/237 (69%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R+ +Q+R +++TR  + YAEGS LV+FG T ++  A++ E VP +++    GWIT
Sbjct: 1   MRPSNREHDQLRPVTITRNFTNYAEGSVLVEFGQTKVICNASIVEGVPRFLKGKNQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+QGGR+ EIQR+IGR+LR+ +DL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTEREASKGKQGGRTLEIQRLIGRSLRACIDLKVLGENTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG+ VA+ D +  M       ++      +VAA+S G+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGSCVAMRDAIHWMVQREKIKKM--PAFNYVAAVSVGIYRGQPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           ED   + D N VM + GH +EVQG+AE  +F+++   +ML+LA+  I  LI++QK+ 
Sbjct: 179 EDVLAETDMNVVMNEQGHFIEVQGTAEDNSFNREQLNSMLSLAEIGIPQLIEIQKNA 235


>gi|308047849|ref|YP_003911415.1| ribonuclease PH [Ferrimonas balearica DSM 9799]
 gi|307630039|gb|ADN74341.1| ribonuclease PH [Ferrimonas balearica DSM 9799]
          Length = 238

 Score =  343 bits (881), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 124/240 (51%), Positives = 163/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  +Q+R +S+TR  + +AEGS LV FG+T ++ TA++EE VP ++R    GWIT
Sbjct: 1   MRSNGRAADQVRPVSITRNFTAHAEGSVLVAFGNTKVICTASVEESVPRFLRGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+Q GR+ EIQR+IGR+LR+ VDL ALG   I IDCDVIQ
Sbjct: 61  AEYGMLPRATHSRNDREAARGKQSGRTMEIQRLIGRSLRAAVDLEALGEVTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D + H++  +        LK  +AAIS G++  + + DLDY 
Sbjct: 121 ADGGTRTAAITGACVALMDAIDHLK--AKGVLKVSPLKQQIAAISVGVVGEHAVCDLDYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS+ + D N VM + G I+EVQG+AE   F+ +    M+ LAK  I  LI  QK   +N
Sbjct: 179 EDSSAETDMNVVMAEDGRIIEVQGTAEGEPFTYEQMLEMMALAKTGIEQLIAAQKAAYNN 238


>gi|113461435|ref|YP_719504.1| ribonuclease PH [Haemophilus somnus 129PT]
 gi|123132220|sp|Q0I4U1|RNPH_HAES1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|112823478|gb|ABI25567.1| RNAse PH [Haemophilus somnus 129PT]
          Length = 238

 Score =  343 bits (881), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 120/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  NQ R I +TR  +K+AEGS LV+FG+T ++ TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNARAINQPRPIKITRHYTKHAEGSVLVEFGETKVICTATVEDSVPRFLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERAITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +    N    +  +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALIDAINFL--LKNGTLTTNPIKGLVAAISVGIVNGETVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS      +L+LAK     L   Q+  ++ 
Sbjct: 179 EDSIAETDMNVVMMEDGRMIEVQGTAEGEPFSHAELLTLLDLAKQGCEQLFVAQRVALAE 238


>gi|158319608|ref|YP_001512115.1| ribonuclease PH [Alkaliphilus oremlandii OhILAs]
 gi|158139807|gb|ABW18119.1| ribonuclease PH [Alkaliphilus oremlandii OhILAs]
          Length = 247

 Score =  343 bits (880), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 121/238 (50%), Positives = 167/238 (70%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ N++R +  TR  ++YA+GS LV+ G+T ++ TAT+E+KVP +++NT  GWITA
Sbjct: 3   RIDGRKNNELRPVKFTRNFTRYAQGSVLVEMGETKVICTATIEDKVPPFLKNTGKGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST +R  RE+  G+  GR+QEIQR+IGRALRSVVDL ALG R + IDCDVIQA
Sbjct: 63  EYSMLPSSTQSRKVRESSRGKVEGRTQEIQRLIGRALRSVVDLDALGERTLWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITG++VAL D L  +++       S  ++  V+AIS G++ G  ++DL Y E
Sbjct: 123 DGGTRTASITGSFVALVDALNKLKE--EGAIESIPVRSFVSAISVGIINGEAMLDLCYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DST  VD N VMTD G  VEVQG+ E + F++     +L L +    +LI+LQK+ + 
Sbjct: 181 DSTAKVDMNIVMTDRGEFVEVQGTGEESPFAKADLMNLLELGEKGNLELIQLQKEALG 238


>gi|85711491|ref|ZP_01042549.1| RNase PH [Idiomarina baltica OS145]
 gi|85694643|gb|EAQ32583.1| RNase PH [Idiomarina baltica OS145]
          Length = 237

 Score =  343 bits (880), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q+R +++TR  +K+AEGS L++FGDT +L  AT+E  VP +++    GW+T
Sbjct: 1   MRPSGRTAQQIRPVTITRNFTKHAEGSVLIEFGDTKVLCNATVEAGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST  R +REA  G+QGGR+ EIQR+I R+LR+ +DL ALG   I +DCDV+Q
Sbjct: 61  AEYSMLPRSTHTRSQREAARGKQGGRTMEIQRLIARSLRACIDLKALGENTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L +M   ++K      LK  VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALNYMR--ASKMVKVNPLKEMVAAISVGIVDGDAVSDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G  +E+QG+AE   FS D   +++++A+  I +LI +QK  ++
Sbjct: 179 EDSQAETDMNVVMTEAGKFIEIQGTAEGEAFSYDEMQSLVDIARVSIKELIDIQKAALA 237


>gi|84622697|ref|YP_450069.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|161899009|ref|YP_199782.2| ribonuclease PH [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188578263|ref|YP_001915192.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|123522908|sp|Q2P6N2|RNPH_XANOM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736951|sp|B2SLL1|RNPH_XANOP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|84366637|dbj|BAE67795.1| Ribonuclease PH [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188522715|gb|ACD60660.1| ribonuclease PH [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 241

 Score =  343 bits (880), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 124/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R + + R  +++AEGS LV FGDTH+L TA++E +VP ++R    GW+TA
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTHVLCTASVENRVPNFLRGKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +       +    L G VAA+S G+  G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKRGEIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  + DL  LQ+  ++ 
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGDLFALQRAALAG 241


>gi|167626670|ref|YP_001677170.1| ribonuclease PH [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|189043763|sp|B0U040|RNPH_FRAP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|167596671|gb|ABZ86669.1| tRNA nucleotidyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 235

 Score =  343 bits (880), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 115/232 (49%), Positives = 161/232 (69%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R + +T   +K+AEGS L++FGDT +L TA++   VP + +++  GW+T
Sbjct: 1   MRPSGRNNDQLRTLKVTHNFTKHAEGSVLIEFGDTKVLCTASVVAGVPRFKKDSGEGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGRALR+ VDL+ +G   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRALRASVDLTKIGENTIKVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +A+ D + +M+      + +  L   VAAIS G+    P++DLDY 
Sbjct: 121 ADGGTRTASITGASLAIRDAIDYMKQNGMLDEQTSPLMSQVAAISVGIFNNEPVLDLDYD 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           EDS  + D N VM  +G ++E+QG+AE   FS++ F  ML LAK  I ++ +
Sbjct: 181 EDSNAETDMNVVMNSNGGMIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFE 232


>gi|319761729|ref|YP_004125666.1| ribonuclease ph [Alicycliphilus denitrificans BC]
 gi|317116290|gb|ADU98778.1| ribonuclease PH [Alicycliphilus denitrificans BC]
          Length = 245

 Score =  343 bits (880), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 127/239 (53%), Positives = 168/239 (70%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R + +TRR + +AEGS L++FG+T +L TA++EEKVP   R +  GW+TA
Sbjct: 9   RSGGRAPDELRPVRITRRYTMHAEGSVLIEFGNTRVLCTASVEEKVPPHKRGSGSGWVTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR+V DL ALG R + IDCDVIQA
Sbjct: 69  EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTLQIDCDVIQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGAWVA HD +  +         +  + G VAA+S G++ G P++DL+Y E
Sbjct: 129 DGGTRTAAITGAWVAAHDAVGTLLAAGKV--AASPITGAVAAVSVGIVQGQPLLDLEYVE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   D D N VMT +GH VEVQG+AE A FS+     +L LA+  IA+L+ LQ++ + N
Sbjct: 187 DVACDTDMNVVMTGAGHYVEVQGTAEGAAFSRREMDQLLALAEKGIAELVLLQQESLRN 245


>gi|83719437|ref|YP_442125.1| ribonuclease PH [Burkholderia thailandensis E264]
 gi|167580996|ref|ZP_02373870.1| ribonuclease PH [Burkholderia thailandensis TXDOH]
 gi|167619073|ref|ZP_02387704.1| ribonuclease PH [Burkholderia thailandensis Bt4]
 gi|257138313|ref|ZP_05586575.1| ribonuclease PH [Burkholderia thailandensis E264]
 gi|123537265|sp|Q2SY74|RNPH_BURTA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|83653262|gb|ABC37325.1| ribonuclease PH [Burkholderia thailandensis E264]
          Length = 243

 Score =  343 bits (880), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 123/238 (51%), Positives = 169/238 (71%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ +Q+R++ +TR  +K+AEGS LV+FG+T ++ TA++ E+VP ++R    GW+TA
Sbjct: 7   RPSGRRADQLRDVRITRHYTKHAEGSVLVEFGETKVICTASVVERVPEFLRERGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +            +  +VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVTKLVAAGKI--ARSPITDYVAAISVGVFGGAPVLDLDYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMT +G  VEVQG+AE   FS+    A+L+LA+  I +L++LQ+  + 
Sbjct: 185 DSACDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQAGIGELVRLQRAALE 242


>gi|134095311|ref|YP_001100386.1| RNase PH [Herminiimonas arsenicoxydans]
 gi|133739214|emb|CAL62263.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Herminiimonas arsenicoxydans]
          Length = 244

 Score =  343 bits (880), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 122/238 (51%), Positives = 163/238 (68%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  + +R I   R  +K+AEGS L++ GDT ++ TA++E++VP +++    GW+TA
Sbjct: 6   RPSGRAADALRAIKFIRNYTKHAEGSVLIECGDTKVICTASIEDRVPGFLKGKGQGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R+ REA  G+Q GR+QEIQR+IGR+LR+  DL A G R + +DCDVIQA
Sbjct: 66  EYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRSLRAAFDLQAFGERTLHLDCDVIQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITG  VA +D    +   +     +  LK  VAAIS G+  G P++DLDY E
Sbjct: 126 DGGTRTAAITGTMVAAYDAFSKL--VAQNVIPAIPLKHFVAAISVGVYKGQPVLDLDYDE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMTD+GH +EVQG+AE A F +     +L+LA+D I DLI +QK  ++
Sbjct: 184 DSDCDTDMNIVMTDAGHFIEVQGTAEGAAFDRATMDRLLDLAQDGIRDLIVMQKQALA 241


>gi|162329623|ref|YP_001218468.2| ribonuclease PH [Vibrio cholerae O395]
 gi|262167372|ref|ZP_06035080.1| ribonuclease PH [Vibrio cholerae RC27]
 gi|262024174|gb|EEY42867.1| ribonuclease PH [Vibrio cholerae RC27]
          Length = 238

 Score =  343 bits (880), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 1   MRPDNRAADQVRSIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D   H+   +        +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASITGASVALADAFAHL--IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++ +QK  + +
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASLLD 238


>gi|323497057|ref|ZP_08102080.1| ribonuclease PH [Vibrio sinaloensis DSM 21326]
 gi|323317901|gb|EGA70889.1| ribonuclease PH [Vibrio sinaloensis DSM 21326]
          Length = 238

 Score =  343 bits (880), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 120/240 (50%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G   + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ +       +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVEKGKL--KANPMKGHVAAVSVGILGEDILCDLEYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++EVQG+AE   F+      +L  A   I++++  QK  + N
Sbjct: 179 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGISEIVAAQKAALEN 238


>gi|330826509|ref|YP_004389812.1| ribonuclease PH [Alicycliphilus denitrificans K601]
 gi|329311881|gb|AEB86296.1| Ribonuclease PH [Alicycliphilus denitrificans K601]
          Length = 245

 Score =  343 bits (880), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 127/239 (53%), Positives = 168/239 (70%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R + +TRR + +AEGS L++FG+T +L TA++EEKVP   R +  GW+TA
Sbjct: 9   RSGGRAPDELRPVRITRRYTMHAEGSVLIEFGNTRVLCTASVEEKVPPHKRGSGSGWVTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR+V DL ALG R + IDCDVIQA
Sbjct: 69  EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTLQIDCDVIQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGAWVA HD +  +         +  + G VAA+S G++ G P++DL+Y E
Sbjct: 129 DGGTRTAAITGAWVAAHDAVGTLLAAGKV--AASPITGAVAAVSVGIVQGQPLLDLEYVE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   D D N VMT +GH VEVQG+AE A FS+     +L LA+  IA+L+ LQ++ + N
Sbjct: 187 DVACDTDMNVVMTGTGHYVEVQGTAEGAAFSRREMDQLLALAEKGIAELMLLQQESLRN 245


>gi|239931006|ref|ZP_04687959.1| ribonuclease PH [Streptomyces ghanaensis ATCC 14672]
 gi|291439379|ref|ZP_06578769.1| ribonuclease PH [Streptomyces ghanaensis ATCC 14672]
 gi|291342274|gb|EFE69230.1| ribonuclease PH [Streptomyces ghanaensis ATCC 14672]
          Length = 245

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 114/241 (47%), Positives = 155/241 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R I++ R  SK+AEGS LV FGDT +L TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPEQLRPITIERGWSKHAEGSVLVSFGDTKVLCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R++GR+LR+V+D  ALG   +++DCDV+QA
Sbjct: 63  EYAMLPRATHTRGDRESVKGRIGGRTHEISRLVGRSLRAVIDYKALGENTVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITG++VAL D +   +         + L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGSYVALADAISWAQGKKLIKAGRRPLTGSVSAVSVGIVGGVPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D   D D N V T  G  VEVQG+AE   F++    A+L+LA    A L   Q+  +   
Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFARAELDALLDLAVAGCARLADAQRAALGTV 242

Query: 242 V 242
           V
Sbjct: 243 V 243


>gi|296113600|ref|YP_003627538.1| ribonuclease PH [Moraxella catarrhalis RH4]
 gi|295921294|gb|ADG61645.1| ribonuclease PH [Moraxella catarrhalis RH4]
 gi|326562662|gb|EGE12964.1| ribonuclease PH [Moraxella catarrhalis 103P14B1]
 gi|326564700|gb|EGE14918.1| ribonuclease PH [Moraxella catarrhalis 46P47B1]
 gi|326568642|gb|EGE18713.1| ribonuclease PH [Moraxella catarrhalis BC7]
 gi|326568768|gb|EGE18838.1| ribonuclease PH [Moraxella catarrhalis BC8]
 gi|326572636|gb|EGE22625.1| ribonuclease PH [Moraxella catarrhalis CO72]
 gi|326574233|gb|EGE24181.1| ribonuclease PH [Moraxella catarrhalis 101P30B1]
 gi|326575018|gb|EGE24947.1| ribonuclease PH [Moraxella catarrhalis O35E]
          Length = 238

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 127/239 (53%), Positives = 168/239 (70%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + RQ N++R I   R+ +K+AEGS LV FGDT +L TA++E  VP W++    GW+T
Sbjct: 1   MRSNNRQNNELRPIHFIRQYTKHAEGSVLVCFGDTKVLCTASIEAGVPRWLKGQGKGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R +REA  G+Q GR+QEIQR+IGR+LR+++DLS LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRATGTRTQREAARGKQSGRTQEIQRLIGRSLRAMLDLSKLGENTIYIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L+H++    K      L G VAA+S G+  G  ++DLDY 
Sbjct: 121 ADGGTRTASISGAAVALIDALEHLQR--RKKLTQDPLLGLVAAVSVGVNQGRVLLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST D D N VMT +G  +E+QG+AE   F++    AML+LA+  I  +I+ QK V+ 
Sbjct: 179 EDSTCDTDLNVVMTQAGGFIEIQGTAEEKPFTRAEANAMLDLAELGIGQIIEAQKQVLG 237


>gi|154246476|ref|YP_001417434.1| ribonuclease PH [Xanthobacter autotrophicus Py2]
 gi|226736952|sp|A7IID4|RNPH_XANP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|154160561|gb|ABS67777.1| ribonuclease PH [Xanthobacter autotrophicus Py2]
          Length = 237

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 137/239 (57%), Positives = 178/239 (74%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  ++MR +S  R V ++AEGSCLVKFGDTH+L +ATLEE++P W++    GW+T
Sbjct: 1   MRPSKRAADEMRAVSFERGVMRHAEGSCLVKFGDTHVLVSATLEERLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R +RE+ +G+Q GR+QEIQR+IGR+LRSV DL ALG +QI +DCDV+Q
Sbjct: 61  AEYSMLPRATHDRTRRESTTGKQSGRTQEIQRLIGRSLRSVTDLVALGEKQITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAW+AL+DCL  M   S        LK HVAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGAWIALYDCLSWMRQRS--MVKEIPLKDHVAAVSCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFVMT +G IVE+QG+AE+  FSQD    +L+LA+  +  L+ LQK  + 
Sbjct: 179 EDSVAETDANFVMTGTGGIVEIQGTAEKTPFSQDELLGLLSLARSGVEKLVGLQKLAVG 237


>gi|294667389|ref|ZP_06732607.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292602830|gb|EFF46263.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 241

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R + + R  +++AEGS LV FGDT +L TA++E +VP ++R    GW+TA
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPGFLRGKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +    +  +    L G VAA+S G+  G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  + +L  LQ+  ++ 
Sbjct: 183 DSDCDTDMNVVMNDDGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQRAALAG 241


>gi|254507299|ref|ZP_05119435.1| ribonuclease PH [Vibrio parahaemolyticus 16]
 gi|219549759|gb|EED26748.1| ribonuclease PH [Vibrio parahaemolyticus 16]
          Length = 240

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 120/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 3   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G   + +DCDVIQ
Sbjct: 63  AEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ +       +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 123 ADGGTRTASISGASVAMADAFQHLVEKGKL--KANPMKGHVAAVSVGILGEDILCDLEYT 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++EVQG+AE   F+      +L  A   I +++  QK  + N
Sbjct: 181 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGITEIVAAQKAALEN 240


>gi|21244122|ref|NP_643704.1| ribonuclease PH [Xanthomonas axonopodis pv. citri str. 306]
 gi|24638175|sp|Q8PH63|RNPH_XANAC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|21109751|gb|AAM38240.1| ribonuclease PH [Xanthomonas axonopodis pv. citri str. 306]
          Length = 241

 Score =  342 bits (879), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R + + R  +++AEGS LV FGDT +L TA++E +VP ++R    GW+TA
Sbjct: 5   RPSGRTADQLRPVRIERSFTRHAEGSVLVSFGDTRVLCTASVENRVPGFLRGKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +    +  +    L G VAA+S G+  G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALADAVNLLIKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  + +L  LQ+  ++ 
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQRAALAG 241


>gi|170718459|ref|YP_001783675.1| ribonuclease PH [Haemophilus somnus 2336]
 gi|189043765|sp|B0UWM2|RNPH_HAES2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|168826588|gb|ACA31959.1| ribonuclease PH [Haemophilus somnus 2336]
          Length = 238

 Score =  342 bits (879), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 120/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  NQ R I +TR  +K+AEGS LV+FG+T ++ TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNARAINQPRPIKITRHYTKHAEGSVLVEFGETKVICTATVEDSVPRFLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLEALGERAITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +    N    +  +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALIDAINFL--LQNGTLTTNPIKGLVAAISVGIVNGETVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS      +L+LAK     L   Q+  ++ 
Sbjct: 179 EDSIAETDMNVVMMEDGRMIEVQGTAEGEPFSHAELLTLLDLAKQGCEQLFVAQRVALAE 238


>gi|316931691|ref|YP_004106673.1| ribonuclease PH [Rhodopseudomonas palustris DX-1]
 gi|315599405|gb|ADU41940.1| ribonuclease PH [Rhodopseudomonas palustris DX-1]
          Length = 237

 Score =  342 bits (879), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 143/239 (59%), Positives = 182/239 (76%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R +SL R V KYAEGSCLVKFGDTH+L TATLEE++P W++    GW+T
Sbjct: 1   MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+ EIQR+IGR+LR++VDL ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATLERTRREASAGKQNGRTVEIQRLIGRSLRTIVDLEALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DCL  M+  +     +QVL+ +VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALADCLNWMK--ARNMIKTQVLRDNVAAISCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFVMT  G +VEVQG+AER  FSQD F  ++ LA+  +A L+ LQK  + 
Sbjct: 179 EDSEAETDANFVMTGDGRLVEVQGTAERTPFSQDEFLQLMALAQKGVARLVDLQKMAVG 237


>gi|261250540|ref|ZP_05943115.1| ribonuclease PH [Vibrio orientalis CIP 102891]
 gi|323495223|ref|ZP_08100305.1| ribonuclease PH [Vibrio brasiliensis LMG 20546]
 gi|260939109|gb|EEX95096.1| ribonuclease PH [Vibrio orientalis CIP 102891]
 gi|323310483|gb|EGA63665.1| ribonuclease PH [Vibrio brasiliensis LMG 20546]
          Length = 238

 Score =  342 bits (879), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 120/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G   + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  QH+ +       +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVEKGKL--KANPMKGHVAAVSVGILGEDILCDLEYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++EVQG+AE   F+      +L  A   I +++  QK  + N
Sbjct: 179 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGITEIVAAQKAALEN 238


>gi|75674392|ref|YP_316813.1| ribonuclease PH [Nitrobacter winogradskyi Nb-255]
 gi|123614308|sp|Q3SW80|RNPH_NITWN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|74419262|gb|ABA03461.1| RNAse PH [Nitrobacter winogradskyi Nb-255]
          Length = 237

 Score =  342 bits (879), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 146/239 (61%), Positives = 183/239 (76%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R +SL R V KYAEGSCLVKFGDTH+L TATLEE++P W++    GW+T
Sbjct: 1   MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+QGGR+ EIQR+IGR+LR+ VDL ALG RQI IDCDVIQ
Sbjct: 61  AEYGMLPRATLERTRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DC+  M+  +     + VL+G+VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALADCVNWMK--ARNMLKAGVLRGNVAAISCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D DANFVMT  G I+EVQG+AE+  FS D F A++ LAK  +A L+ LQK  ++
Sbjct: 179 EDSEADTDANFVMTGEGRIIEVQGTAEKVPFSDDEFLALMALAKKGVARLVDLQKMAVA 237


>gi|184200648|ref|YP_001854855.1| ribonuclease PH [Kocuria rhizophila DC2201]
 gi|183580878|dbj|BAG29349.1| ribonuclease PH [Kocuria rhizophila DC2201]
          Length = 244

 Score =  342 bits (879), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 114/240 (47%), Positives = 161/240 (67%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR   ++R I++TR  S+ AEGS L++FG T +L TA+L E VP W++    GW+T
Sbjct: 1   MRADGRSVAELRPITITRGWSEQAEGSALIEFGGTRVLCTASLTEGVPRWLKGEGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LRS++DL ALG   +++DCDV+Q
Sbjct: 61  AEYAMLPRATSTRSARESVKGKIGGRTHEISRLIGRSLRSIIDLEALGENTVVLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL + +    D     +    L   VAA+S G++ G P++DL Y 
Sbjct: 121 ADGGTRTASITGAYVALAEAINWAHDNGVLKRRVNPLTDSVAAVSVGIIDGVPMLDLPYV 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   + D N V+T SG  VEVQG+AE A F +D   A+L+LA    + L ++Q++ + +
Sbjct: 181 EDVRAETDMNVVVTGSGDFVEVQGTAEGAPFRRDELDALLDLAVAGCSQLAQIQRETLES 240


>gi|39933406|ref|NP_945682.1| ribonuclease PH [Rhodopseudomonas palustris CGA009]
 gi|192288763|ref|YP_001989368.1| ribonuclease PH [Rhodopseudomonas palustris TIE-1]
 gi|61215953|sp|Q6NCY8|RNPH_RHOPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736930|sp|B3Q968|RNPH_RHOPT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|39647252|emb|CAE25773.1| ribonuclease PH [Rhodopseudomonas palustris CGA009]
 gi|192282512|gb|ACE98892.1| ribonuclease PH [Rhodopseudomonas palustris TIE-1]
          Length = 237

 Score =  342 bits (879), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 143/239 (59%), Positives = 181/239 (75%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R +SL R V KYAEGSCLVKFGDTH+L TATLEE++P W++    GW+T
Sbjct: 1   MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+ EIQR+IGR+LR++VDL ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATLERTRREASAGKQNGRTVEIQRLIGRSLRTIVDLEALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DCL  M+  +      QVL+ +VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALADCLNWMK--ARNMIKGQVLRDNVAAISCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFVMT  G +VEVQG+AER  FSQD F  ++ LA+  +A L+ LQK  + 
Sbjct: 179 EDSEAETDANFVMTGDGRLVEVQGTAERTPFSQDEFLQLMALAQKGVARLVDLQKMAVG 237


>gi|167570847|ref|ZP_02363721.1| ribonuclease PH [Burkholderia oklahomensis C6786]
          Length = 243

 Score =  342 bits (879), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 126/238 (52%), Positives = 170/238 (71%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ NQ+R++ +TRR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+   GW+TA
Sbjct: 7   RPSGRRANQLRDVRITRRYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R + +DCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLDALGPRTLHLDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +            +  +VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVTKLVSTGKI--PRSPITDYVAAISVGVFGGAPVLDLDYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMT SG  VEVQG+AE   FS+    A+L+LA+  I +L+++Q+  + 
Sbjct: 185 DSACDTDMNVVMTGSGGFVEVQGTAEGVPFSRAEMNALLDLAQAGIGELVRVQRAALE 242


>gi|291278861|ref|YP_003495696.1| tRNA nucleotidyltransferase [Deferribacter desulfuricans SSM1]
 gi|290753563|dbj|BAI79940.1| tRNA nucleotidyltransferase [Deferribacter desulfuricans SSM1]
          Length = 238

 Score =  342 bits (879), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 116/239 (48%), Positives = 161/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+ ++MR I +T    KY EGS L++FG+T ++  A++ E VP +++ T  GWIT
Sbjct: 1   MRSDGRKNDEMRLIKITTDYIKYPEGSVLIEFGETKVICNASITEGVPPFLKGTGTGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+  GR+QEI R+IGRALRSVVD+S LG R ++IDCDVIQ
Sbjct: 61  AEYSMLPRATHTRNVRESVKGKLSGRTQEISRLIGRALRSVVDMSVLGERTVVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+G +VAL+   + +       +    +K  VAA+S G+L    I+DL+Y 
Sbjct: 121 ADGGTRTASISGGFVALYSAFEKLVKSGELEK--NPIKNFVAAVSVGVLNDDVILDLNYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST  VD N V TDSG I+E+QG+ E + FS+D    M++ A   I ++I+ QK  + 
Sbjct: 179 EDSTARVDMNVVATDSGEIIEIQGTGEESPFSRDVLNKMIDYAFIGINNIIEAQKKALG 237


>gi|225849820|ref|YP_002730054.1| ribonuclease PH [Persephonella marina EX-H1]
 gi|254808597|sp|C0QTN9|RNPH_PERMH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|225646433|gb|ACO04619.1| ribonuclease PH [Persephonella marina EX-H1]
          Length = 261

 Score =  342 bits (878), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 119/240 (49%), Positives = 159/240 (66%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+  Q+R + + R  + YAEGS L++ G+T ++ TA++EEKVP ++R T  GWIT
Sbjct: 1   MRPDGRKPTQLRPVKIIRDFNIYAEGSVLIEMGNTKVIITASIEEKVPPFLRGTGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST +R  RE V G   GR+QEIQR+IGR+LR VVDL  LG R + +DCDVIQ
Sbjct: 61  AEYAMLPRSTESRSIREVVRGAPSGRTQEIQRLIGRSLRGVVDLKKLGERTLWVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITGA++A+ D +  + +     Q    LK +VAAIS G++    ++DL++ 
Sbjct: 121 ADGGTRVASITGAFIAVADAMIKLTESGKVRQ--NPLKDYVAAISTGIVGNEVVLDLNFK 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS+  VD N VMT SG+ VEVQ + E  +F+Q  F  ML   K  I  LI +QK  I  
Sbjct: 179 EDSSAKVDMNLVMTGSGNFVEVQATGEEYSFTQQEFDKMLEYGKLGINKLIHIQKKFIEG 238


>gi|237785978|ref|YP_002906683.1| ribonuclease PH [Corynebacterium kroppenstedtii DSM 44385]
 gi|259494118|sp|C4LJY5|RNPH_CORK4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|237758890|gb|ACR18140.1| ribonuclease PH [Corynebacterium kroppenstedtii DSM 44385]
          Length = 254

 Score =  342 bits (878), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 105/241 (43%), Positives = 162/241 (67%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  ++MR + + R  +    GS LV+FG+T ++ TA++E++VP + +++  GW+T
Sbjct: 5   VRADGRALDEMRPVRIVRGFTTNPAGSVLVEFGNTRVMCTASVEDRVPRFKKDSGEGWLT 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP +T  R+ RE++ G+  GR+ EI R++GR+LR+ +DL ALG   I +DCDV+Q
Sbjct: 65  AEYSMLPSATAERMPRESMRGKVKGRTHEISRLVGRSLRAAIDLKALGENTIALDCDVLQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D L ++E  +        L   VAA+S G++ G+  +DL Y 
Sbjct: 125 ADGGTRTASITGAYVALADALTYLE--AEGLVSQNALLPPVAAVSVGLIDGHVCLDLPYE 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  +VD N VMT+SG  VE+QG+ E +TFS++     ++ A+   ++LI+ QK+ +S 
Sbjct: 183 EDSRAEVDMNVVMTESGEFVEIQGTGEHSTFSREQLMQFMDAAEKGCSELIRAQKEALSK 242

Query: 241 E 241
            
Sbjct: 243 P 243


>gi|53720176|ref|YP_109162.1| ribonuclease PH [Burkholderia pseudomallei K96243]
 gi|53726007|ref|YP_103672.1| ribonuclease PH [Burkholderia mallei ATCC 23344]
 gi|124386333|ref|YP_001028601.1| ribonuclease PH [Burkholderia mallei NCTC 10229]
 gi|126449191|ref|YP_001081500.1| ribonuclease PH [Burkholderia mallei NCTC 10247]
 gi|126454192|ref|YP_001067258.1| ribonuclease PH [Burkholderia pseudomallei 1106a]
 gi|134280511|ref|ZP_01767222.1| ribonuclease PH [Burkholderia pseudomallei 305]
 gi|162139483|ref|YP_992156.2| ribonuclease PH [Burkholderia mallei SAVP1]
 gi|162210051|ref|YP_334425.2| ribonuclease PH [Burkholderia pseudomallei 1710b]
 gi|167739724|ref|ZP_02412498.1| ribonuclease PH [Burkholderia pseudomallei 14]
 gi|167816928|ref|ZP_02448608.1| ribonuclease PH [Burkholderia pseudomallei 91]
 gi|167825331|ref|ZP_02456802.1| ribonuclease PH [Burkholderia pseudomallei 9]
 gi|167846833|ref|ZP_02472341.1| ribonuclease PH [Burkholderia pseudomallei B7210]
 gi|167895425|ref|ZP_02482827.1| ribonuclease PH [Burkholderia pseudomallei 7894]
 gi|167912075|ref|ZP_02499166.1| ribonuclease PH [Burkholderia pseudomallei 112]
 gi|167920049|ref|ZP_02507140.1| ribonuclease PH [Burkholderia pseudomallei BCC215]
 gi|226193870|ref|ZP_03789472.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei Pakistan 9]
 gi|242317328|ref|ZP_04816344.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1106b]
 gi|254175672|ref|ZP_04882332.1| ribonuclease PH [Burkholderia mallei ATCC 10399]
 gi|254181028|ref|ZP_04887626.1| ribonuclease PH [Burkholderia pseudomallei 1655]
 gi|254191874|ref|ZP_04898377.1| ribonuclease PH [Burkholderia pseudomallei Pasteur 52237]
 gi|254202370|ref|ZP_04908733.1| ribonuclease PH [Burkholderia mallei FMH]
 gi|254259675|ref|ZP_04950729.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1710a]
 gi|254298852|ref|ZP_04966302.1| ribonuclease PH [Burkholderia pseudomallei 406e]
 gi|254356396|ref|ZP_04972672.1| ribonuclease PH [Burkholderia mallei 2002721280]
 gi|61215844|sp|Q62HZ8|RNPH_BURMA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61215857|sp|Q63RV5|RNPH_BURPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228270|sp|A3MML4|RNPH_BURM7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228271|sp|A2S9I2|RNPH_BURM9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228272|sp|A3NY37|RNPH_BURP0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|52210590|emb|CAH36573.1| ribonuclease PH [Burkholderia pseudomallei K96243]
 gi|52429430|gb|AAU50023.1| ribonuclease PH [Burkholderia mallei ATCC 23344]
 gi|124294353|gb|ABN03622.1| tRNA nucleotidyltransferase [Burkholderia mallei NCTC 10229]
 gi|126227834|gb|ABN91374.1| ribonuclease PH [Burkholderia pseudomallei 1106a]
 gi|126242061|gb|ABO05154.1| tRNA nucleotidyltransferase [Burkholderia mallei NCTC 10247]
 gi|134248518|gb|EBA48601.1| ribonuclease PH [Burkholderia pseudomallei 305]
 gi|147746617|gb|EDK53694.1| ribonuclease PH [Burkholderia mallei FMH]
 gi|148025393|gb|EDK83547.1| ribonuclease PH [Burkholderia mallei 2002721280]
 gi|157808936|gb|EDO86106.1| ribonuclease PH [Burkholderia pseudomallei 406e]
 gi|157939545|gb|EDO95215.1| ribonuclease PH [Burkholderia pseudomallei Pasteur 52237]
 gi|160696716|gb|EDP86686.1| ribonuclease PH [Burkholderia mallei ATCC 10399]
 gi|184211567|gb|EDU08610.1| ribonuclease PH [Burkholderia pseudomallei 1655]
 gi|225934175|gb|EEH30160.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei Pakistan 9]
 gi|242140567|gb|EES26969.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1106b]
 gi|254218364|gb|EET07748.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 1710a]
          Length = 243

 Score =  342 bits (878), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 124/239 (51%), Positives = 171/239 (71%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R SGR+ +Q+R++ +TR  +K+AEG+ LV+FGDT ++ TA++ E+VP ++R    GW+T
Sbjct: 6   LRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLT 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQ
Sbjct: 66  AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQ 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA HD +  +            +  +VAAIS G+  G P++DLDY 
Sbjct: 126 ADGGTRTASITGAFVAAHDAVTKLVAAGRI--ARSPITDYVAAISVGVFGGTPVLDLDYD 183

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT +G  VEVQG+AE A FS+    A+L+LA+  I +L++LQ+  + 
Sbjct: 184 EDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAALE 242


>gi|16079889|ref|NP_390715.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310778|ref|ZP_03592625.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315103|ref|ZP_03596908.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221320021|ref|ZP_03601315.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221324304|ref|ZP_03605598.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321312370|ref|YP_004204657.1| ribonuclease PH [Bacillus subtilis BSn5]
 gi|133188|sp|P28619|RNPH_BACSU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|47168514|pdb|1OYP|A Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168515|pdb|1OYP|B Chain B, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168516|pdb|1OYP|C Chain C, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168517|pdb|1OYP|D Chain D, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168518|pdb|1OYP|E Chain E, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168519|pdb|1OYP|F Chain F, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168520|pdb|1OYR|A Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168521|pdb|1OYR|B Chain B, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168522|pdb|1OYR|C Chain C, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168523|pdb|1OYR|D Chain D, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168524|pdb|1OYR|E Chain E, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|47168525|pdb|1OYR|F Chain F, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
 gi|143444|gb|AAA22705.1| RNase PH [Bacillus subtilis]
 gi|1770059|emb|CAA99554.1| RNase PH [Bacillus subtilis]
 gi|2635302|emb|CAB14797.1| ribonuclease PH [Bacillus subtilis subsp. subtilis str. 168]
 gi|320018644|gb|ADV93630.1| ribonuclease PH [Bacillus subtilis BSn5]
          Length = 245

 Score =  342 bits (878), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 110/243 (45%), Positives = 158/243 (65%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GRQ +++R I+       + EGS L+  G+T ++  A++E++VP ++R    GWIT
Sbjct: 1   MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL  LG R I IDCDVIQ
Sbjct: 61  AEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA++A+   +  +         +  +   +AAIS G+      ++DL+Y
Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLIKAGTI--KTNPITDFLAAISVGIDKEQGILLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS+ +VD N +MT SG  VE+QG+ E ATFS++    +L LA+  I +LI  QK+V+ 
Sbjct: 179 EEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLG 238

Query: 240 NEV 242
           + +
Sbjct: 239 DSL 241


>gi|206603687|gb|EDZ40167.1| Ribonuclease PH [Leptospirillum sp. Group II '5-way CG']
          Length = 245

 Score =  342 bits (878), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 116/239 (48%), Positives = 160/239 (66%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+   +R +S+   V+ YAEGS LV+ G+T +L TA++EEKVP ++++   GW+T
Sbjct: 2   MRSDGRKPENLRSLSIKTGVNLYAEGSVLVEMGNTKVLCTASVEEKVPPFLKDQGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LRSVVD   +G R I IDCDV+Q
Sbjct: 62  AEYGMLPRSTHERNSREAAKGKQSGRTQEIQRLIGRSLRSVVDTKKMGVRTITIDCDVLQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+G +VA+      +            ++ ++AA+S G++ G P++DL Y 
Sbjct: 122 ADGGTRTASISGGFVAMCLAFSELHK--RGLMPEWPVREYLAAVSVGVVEGLPVLDLCYT 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT+SGH VE+QG+AE   FS+     +L L +  I ++I  QK V S
Sbjct: 180 EDSGAETDMNLVMTESGHFVEIQGTAEETPFSRQTLDTLLGLGEKGIREIIACQKSVFS 238


>gi|167563697|ref|ZP_02356613.1| ribonuclease PH [Burkholderia oklahomensis EO147]
          Length = 243

 Score =  342 bits (878), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 126/238 (52%), Positives = 170/238 (71%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+ NQ+R++ +TRR +K+AEGS LV+FGDT ++ TA++ E+VP ++R+   GW+TA
Sbjct: 7   RPSGRRANQLRDVRITRRYTKHAEGSVLVEFGDTKVICTASVAERVPEFLRDRGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL ALG R + +DCDVIQA
Sbjct: 67  EYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLDALGPRTLHLDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +  +            +  +VAAIS G+  G P++DLDY E
Sbjct: 127 DGGTRTASITGAFVAAHDAVTKLVATGKI--PRSPITDYVAAISVGVFGGAPVLDLDYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMT SG  VEVQG+AE   FS+    A+L+LA+  I +L+++Q+  + 
Sbjct: 185 DSACDTDMNVVMTGSGGFVEVQGTAEGVPFSRAEMNALLDLAQAGIGELVRVQRAALE 242


>gi|239817292|ref|YP_002946202.1| ribonuclease PH [Variovorax paradoxus S110]
 gi|239803869|gb|ACS20936.1| ribonuclease PH [Variovorax paradoxus S110]
          Length = 243

 Score =  342 bits (878), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 123/240 (51%), Positives = 170/240 (70%), Gaps = 2/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R + +TR  + +AEGS L++FG T +L TA++EE+VP   R +  GW+TA
Sbjct: 6   RSGGRAADQLRPVRITRGFTIHAEGSVLIEFGQTRVLCTASVEERVPPHKRGSGEGWVTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR++R+V DL+ALG R I +DCDV+QA
Sbjct: 66  EYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSMRAVFDLAALGERTIHLDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VA  D +  +   +     +  ++GHVAAIS G++ G P++DL+Y E
Sbjct: 126 DGGTRTAAITGAFVAAQDAVNKL--LAAGTIPASPIRGHVAAISVGIVAGTPLLDLEYTE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  D D N VMT +GH VEVQG+AE A FS++    +L LA+  I +LI LQ+  + ++
Sbjct: 184 DSACDTDMNVVMTGAGHFVEVQGTAEGAAFSREEMNLLLGLAEKGIGELIVLQQQSLVSK 243


>gi|322513841|ref|ZP_08066923.1| tRNA nucleotidyltransferase [Actinobacillus ureae ATCC 25976]
 gi|322120328|gb|EFX92267.1| tRNA nucleotidyltransferase [Actinobacillus ureae ATCC 25976]
          Length = 238

 Score =  342 bits (878), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 123/239 (51%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ+R + +TR  ++YAEGS LV+FG+T +L  AT+EE VP +++  + GW+T
Sbjct: 1   MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VALHD +  +   ++       +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALHDAMSKL--VADSVLKENPMKGLVAAISVGIVDGNAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G +VEVQG+AE   FS      +L+LA   I  L+  Q+  + 
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALG 237


>gi|331007601|ref|ZP_08330748.1| Ribonuclease PH [gamma proteobacterium IMCC1989]
 gi|330418594|gb|EGG93113.1| Ribonuclease PH [gamma proteobacterium IMCC1989]
          Length = 239

 Score =  342 bits (878), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 124/239 (51%), Positives = 160/239 (66%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q R I LT+  +K+AEGS L++FG+T ++ TA++E  VP ++R    GWITA
Sbjct: 3   RPSGRTPDQTRPIRLTKNFTKHAEGSVLIEFGETKVICTASIENSVPGFLRGQGKGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST +R+ REA  G+Q GR+ EIQR+IGR+LR+ VDL  LG R I IDCDVIQA
Sbjct: 63  EYGMLPRSTHSRMNREAARGKQTGRTVEIQRLIGRSLRAAVDLEVLGERTITIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  +   +N       L   +A+IS G+  G  ++DLDY E
Sbjct: 123 DGGTRTASITGACVALADALNKL--LANGTLKQNPLTRMIASISVGIYQGEAVLDLDYPE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS+ D D N VM D G ++EVQG+AE   FS+  F  ML LAK  I +L   Q   ++ 
Sbjct: 181 DSSADTDMNIVMADDGGMIEVQGTAEGEPFSEAEFMQMLTLAKKGIKELNAAQLACLAE 239


>gi|254515846|ref|ZP_05127906.1| ribonuclease PH [gamma proteobacterium NOR5-3]
 gi|219675568|gb|EED31934.1| ribonuclease PH [gamma proteobacterium NOR5-3]
          Length = 240

 Score =  342 bits (878), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 124/238 (52%), Positives = 170/238 (71%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R+IS+ R+ + +AEGS LV FG+T ++ TA++E+ VP ++R    GWITA
Sbjct: 3   RPSGRATDQLRDISIERQFTCHAEGSVLVSFGNTRVICTASVEDSVPRFLRGKNSGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG+R+ REA  G+QGGR+QEIQR+IGR+LR+ VDLS LG   I +DCDVIQA
Sbjct: 63  EYGMLPRSTGSRMGREAARGKQGGRTQEIQRLIGRSLRAAVDLSKLGEHTITLDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  ++   +K   +  L+  VA++S G+  G  ++DLDY E
Sbjct: 123 DGGTRTASITGAFVALVDAINGLQR--DKKISTDPLRHFVASVSVGVYQGEAVLDLDYIE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VM + G  +EVQG+AE A FS+     ML+LA   I+ LI+ Q+  ++
Sbjct: 181 DSKADTDLNVVMAEHGEFIEVQGTAEAAPFSRTELDQMLDLASGGISTLIECQRQALA 238


>gi|78042648|ref|YP_359184.1| ribonuclease PH [Carboxydothermus hydrogenoformans Z-2901]
 gi|123577019|sp|Q3AFA0|RNPH_CARHZ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|77994763|gb|ABB13662.1| ribonuclease PH [Carboxydothermus hydrogenoformans Z-2901]
          Length = 254

 Score =  342 bits (878), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 127/240 (52%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+++Q+R + +T    K+AEGS L++ GDT ++ TAT+E+KVP + +    GWIT
Sbjct: 1   MRIDGREKDQLRTVKITTNYIKHAEGSVLIEMGDTRVVCTATVEDKVPPFAKGEGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  GRQ GR+ EIQR+IGRALR VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYGMLPRSTETRNVREATKGRQSGRTLEIQRLIGRALRGVVDLKALGERTLWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VAL   L  + +          LK  VAA+S G++ G  I+DL++ 
Sbjct: 121 ADGGTRTAAITGSFVALALALNKLVE--EGILPVIPLKDFVAAVSVGIVDGEEILDLNFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VMT S   VEVQG+ E ATFS +    +L LA+  I +LI+LQK  + +
Sbjct: 179 EDSKALVDMNVVMTGSNRFVEVQGTGEEATFSMEELQRLLTLAQKGIRELIELQKQALGD 238


>gi|83942034|ref|ZP_00954496.1| ribonuclease PH [Sulfitobacter sp. EE-36]
 gi|83953083|ref|ZP_00961805.1| ribonuclease PH [Sulfitobacter sp. NAS-14.1]
 gi|83842051|gb|EAP81219.1| ribonuclease PH [Sulfitobacter sp. NAS-14.1]
 gi|83847854|gb|EAP85729.1| ribonuclease PH [Sulfitobacter sp. EE-36]
          Length = 237

 Score =  342 bits (877), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 125/239 (52%), Positives = 174/239 (72%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +++R +S+    +K+AEGS L+K GDTH+L TAT+E++VP +I+ +  GW+T
Sbjct: 1   MRPSGRKLDELRAVSIETGFTKHAEGSALIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA  G+QGGR+ EIQR+IGRALR+ VD SALG RQI IDCDV+Q
Sbjct: 61  AEYGMLPRATNTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRSALGERQITIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +    +    S  L   VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALKLAVNKLMKAGDVV--SDPLVDPVAAISCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD NF+MT +G ++E+Q SAE +T+S+D    +++LA+  +A+L++ QK   +
Sbjct: 179 EDSEAGVDGNFIMTGTGKLIEIQMSAEGSTYSRDQMNQLMDLAEKGVAELVEKQKAATA 237


>gi|126438556|ref|YP_001059966.1| ribonuclease PH [Burkholderia pseudomallei 668]
 gi|167903809|ref|ZP_02491014.1| ribonuclease PH [Burkholderia pseudomallei NCTC 13177]
 gi|166228273|sp|A3NC95|RNPH_BURP6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|126218049|gb|ABN81555.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 668]
          Length = 243

 Score =  342 bits (877), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 125/239 (52%), Positives = 171/239 (71%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R SGR+ +Q+R++ +TR  +K+AEG+ LV+FGDT ++ TA++ E+VP ++R    GW+T
Sbjct: 6   LRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLT 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQ
Sbjct: 66  AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQ 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA HD +  +            +  +VAAIS GM  G P++DLDY 
Sbjct: 126 ADGGTRTASITGAFVAAHDAVTKLVAAGRI--ARSPITDYVAAISVGMFGGTPVLDLDYD 183

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT +G  VEVQG+AE A FS+    A+L+LA+  I +L++LQ+  + 
Sbjct: 184 EDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAALE 242


>gi|326565518|gb|EGE15689.1| ribonuclease PH [Moraxella catarrhalis 12P80B1]
          Length = 238

 Score =  342 bits (877), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 127/239 (53%), Positives = 168/239 (70%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + RQ N++R I   R+ +K+AEGS LV FGDT +L TA++E  VP W++    GW+T
Sbjct: 1   MRSNNRQNNELRPIYFIRQYTKHAEGSVLVCFGDTKVLCTASIEAGVPRWLKGQGKGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R +REA  G+Q GR+QEIQR+IGR+LR+++DLS LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRATGTRTQREAARGKQSGRTQEIQRLIGRSLRAMLDLSKLGENTIYIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L+H++    K      L G VAA+S G+  G  ++DLDY 
Sbjct: 121 ADGGTRTASISGAAVALIDALEHLQR--RKKLTQDPLLGLVAAVSVGVNQGRVLLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST D D N VMT +G  +E+QG+AE   F++    AML+LA+  I  +I+ QK V+ 
Sbjct: 179 EDSTCDTDLNVVMTQAGGFIEIQGTAEEKPFTRAEANAMLDLAELGIGQIIEAQKQVLG 237


>gi|32035564|ref|ZP_00135495.1| COG0689: RNase PH [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|126207543|ref|YP_001052768.1| ribonuclease PH [Actinobacillus pleuropneumoniae L20]
 gi|165975512|ref|YP_001651105.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|303251878|ref|ZP_07338049.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247031|ref|ZP_07529085.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|307260507|ref|ZP_07542201.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|166228262|sp|A3MYC7|RNPH_ACTP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736879|sp|B0BRL3|RNPH_ACTPJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|126096335|gb|ABN73163.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
 gi|165875613|gb|ABY68661.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|302649308|gb|EFL79493.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306856483|gb|EFM88632.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|306869819|gb|EFN01602.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 238

 Score =  342 bits (877), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ+R + +TR  ++YAEGS LV+FG+T +L  AT+EE VP +++  + GW+T
Sbjct: 1   MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VALHD +  +   ++       +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALHDAMSKL--VADGVLKENPMKGLVAAISVGIVDGNAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G +VEVQG+AE   FS      +L+LA   I  L+  Q+  ++
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALA 237


>gi|294627116|ref|ZP_06705704.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|325918115|ref|ZP_08180270.1| RNAse PH [Xanthomonas vesicatoria ATCC 35937]
 gi|325922286|ref|ZP_08184067.1| RNAse PH [Xanthomonas gardneri ATCC 19865]
 gi|292598549|gb|EFF42698.1| ribonuclease PH [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|325535661|gb|EGD07502.1| RNAse PH [Xanthomonas vesicatoria ATCC 35937]
 gi|325547239|gb|EGD18312.1| RNAse PH [Xanthomonas gardneri ATCC 19865]
          Length = 241

 Score =  342 bits (877), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R + + R  +++AEGS LV FGDT +L TA++E +VP ++R    GW+TA
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPGFLRGKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +    +  +    L G VAA+S G+  G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  + +L  LQ+  ++ 
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQRAALAG 241


>gi|126738497|ref|ZP_01754202.1| ribonuclease PH [Roseobacter sp. SK209-2-6]
 gi|126720296|gb|EBA17002.1| ribonuclease PH [Roseobacter sp. SK209-2-6]
          Length = 237

 Score =  342 bits (877), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 130/237 (54%), Positives = 170/237 (71%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ N+MR +S+    +K+AEGSCL+K G+TH+L TATLEE+VP +I+ +  GW+T
Sbjct: 1   MRPSGRELNEMRPVSIETGFTKHAEGSCLIKMGETHVLCTATLEERVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA SG+QGGR+ EIQR+IGRALR+ VD  ALG RQI IDCDV+Q
Sbjct: 61  AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR AAITG WVAL   +  +    +       L   V+AISCG+  G P++DLDY 
Sbjct: 121 ADGGTRCAAITGGWVALRLAVNKLMKAGDVTI--DPLMDPVSAISCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS   VD NF+MT SG ++EVQ SAE + FS+D    +++LA+   ++L  LQK  
Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEVQMSAEGSIFSRDQMNQLMDLAEKGTSELAALQKAA 235


>gi|254369050|ref|ZP_04985063.1| ribonuclease PH [Francisella tularensis subsp. holarctica FSC022]
 gi|157121971|gb|EDO66141.1| ribonuclease PH [Francisella tularensis subsp. holarctica FSC022]
          Length = 235

 Score =  342 bits (877), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 115/232 (49%), Positives = 161/232 (69%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R + +T   +K+AEGS L++FGDT ++ TA++   VP + +++  GW+ 
Sbjct: 1   MRPSGRNNDQLRNLKVTHNFTKHAEGSVLIEFGDTKVICTASVVAGVPKFKKDSGEGWLI 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+QEIQR+IGRALR+ VDL+A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHMRMDREAARGKQSGRTQEIQRLIGRALRASVDLTAIGENTIKVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +A+ D +++M+      + +  L   VAAIS G+    P++DLDY 
Sbjct: 121 ADGGTRTASITGASLAIADAIEYMKQNGILDEQANPLLSQVAAISVGIYNNEPVLDLDYD 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           EDS  + D N VM  +G I+E+QG+AE   FS++ F  ML LAK  I ++  
Sbjct: 181 EDSNAETDMNVVMNSNGGIIEIQGTAEGKDFSEEEFAKMLGLAKKGIKEIFA 232


>gi|296268927|ref|YP_003651559.1| ribonuclease PH [Thermobispora bispora DSM 43833]
 gi|296091714|gb|ADG87666.1| ribonuclease PH [Thermobispora bispora DSM 43833]
          Length = 247

 Score =  342 bits (877), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 117/242 (48%), Positives = 162/242 (66%), Gaps = 3/242 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60
           R  GR+ +Q+R +++TR    +AEGS LV+FG T +L  AT+E   VP W + +  GW+T
Sbjct: 3   RSDGRRPDQLRPVTITRNWLAHAEGSVLVEFGATKVLCAATVEAGNVPRWRKGSGLGWVT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+TG R +RE+V G+ GGR+ EI R+IGRALR+ VD   +G   IIIDCDV+Q
Sbjct: 63  AEYAMLPRATGTRSERESVKGKIGGRTHEISRLIGRALRACVDFKVMGENSIIIDCDVLQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D +  M   +N+  L   L   V+A+S G++   P++DL Y 
Sbjct: 123 ADGGTRTAAITGAFVALADAVAWMR--ANEVCLGDPLVNSVSAVSVGIVGSEPLLDLCYE 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   + D N VMT +G  VEVQG+AE A F +D   A+L+LA    A+L ++Q + +  
Sbjct: 181 EDVVAETDMNVVMTGAGAFVEVQGTAEGAPFGRDQLNALLDLATAGCAELARIQAEALGR 240

Query: 241 EV 242
           ++
Sbjct: 241 DL 242


>gi|284029809|ref|YP_003379740.1| ribonuclease PH [Kribbella flavida DSM 17836]
 gi|283809102|gb|ADB30941.1| ribonuclease PH [Kribbella flavida DSM 17836]
          Length = 238

 Score =  342 bits (877), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 113/238 (47%), Positives = 159/238 (66%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R ++LTR+   +AEGS LV+FG T +L  A++ E VP W + +  GW++A
Sbjct: 3   RIDGRTPDQLRPVTLTRKWLDHAEGSVLVEFGRTRVLCAASVTEGVPRWRKGSGLGWVSA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  RE+V GR GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYAMLPRSTNTRSDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTILLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  + D   K    + L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVSFLRD--RKALKGEPLTGSVSAVSVGIIDGTPMLDLCYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   + D N V+T  G  +EVQG+AE A F +    ++L L      +L KLQ++ ++
Sbjct: 181 DVRAETDMNLVLTGDGKFIEVQGTAEGAPFDRAELDSLLELGTAGCVELTKLQREALA 238


>gi|53802880|ref|YP_115411.1| ribonuclease PH [Methylococcus capsulatus str. Bath]
 gi|61215834|sp|Q602N9|RNPH_METCA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|53756641|gb|AAU90932.1| ribonuclease PH [Methylococcus capsulatus str. Bath]
          Length = 243

 Score =  342 bits (877), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 118/238 (49%), Positives = 168/238 (70%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +Q+R I+ T   +K+AEGS LV+FGDT ++ TA++EE+VP +++    GWIT
Sbjct: 1   MRPSGRRPDQLRRIAFTCNYTKHAEGSVLVEFGDTRVICTASVEERVPPFLKGKGSGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+IGR+LR+ ++L ALG R + +DCDVIQ
Sbjct: 61  AEYGMLPRATHERTGREAARGKQGGRTMEIQRLIGRSLRAALNLEALGERTVTLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +VAL   +Q +    ++   +  + G +A++S G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGGYVALVLAVQRL--LKSRKIKTNPVHGQIASVSVGICQGVPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           ED   + D N VM D+G  +E+QG+AE   F +D   AML LA+  IADL+  Q++ +
Sbjct: 179 EDCDAETDMNVVMNDAGAFIEIQGTAEGHAFRRDELDAMLRLAEAGIADLLLHQQEAL 236


>gi|303250534|ref|ZP_07336731.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307251576|ref|ZP_07533483.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|302650522|gb|EFL80681.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306861040|gb|EFM93046.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 238

 Score =  342 bits (877), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ+R + +TR  ++YAEGS LV+FG+T +L  AT+EE VP +++  + GW+T
Sbjct: 1   MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR+VVDL  LG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKVLGERTITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VALHD +  +   ++       +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALHDAMSKL--VADGVLKENPMKGLVAAISVGIVDGNAVCDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G +VEVQG+AE   FS      +L+LA   I  L+  Q+  ++
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALA 237


>gi|270157357|ref|ZP_06186014.1| ribonuclease PH [Legionella longbeachae D-4968]
 gi|289164250|ref|YP_003454388.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Legionella longbeachae NSW150]
 gi|269989382|gb|EEZ95636.1| ribonuclease PH [Legionella longbeachae D-4968]
 gi|288857423|emb|CBJ11251.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Legionella longbeachae NSW150]
          Length = 235

 Score =  341 bits (876), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 117/237 (49%), Positives = 161/237 (67%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R+ NQ+R I LTR  +K+AEGS LV+FG T +L  A++ E VP +I+    GW+T
Sbjct: 1   MRPSNREANQLRPIQLTRNYTKHAEGSVLVEFGQTKVLCNASVTEGVPRFIKGKNQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+QGGR+ EIQR+IGR+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTEREASKGKQGGRTMEIQRLIGRSLRACVDLKFLGENTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG+ VA+ D +  M +     ++      ++AA+S G+  G  ++DLDY 
Sbjct: 121 ADGGTRTAAITGSCVAMRDAISWMVEREKIRRM--PAFNYIAAVSVGLYRGQAVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           ED   + D N VM ++GH +E+QG+AE   F+++    ML LA+  I  LI++QK  
Sbjct: 179 EDVLAETDMNVVMNEAGHFIEIQGTAEDRHFNREELNNMLALAEIGIPQLIEIQKKA 235


>gi|302871436|ref|YP_003840072.1| ribonuclease PH [Caldicellulosiruptor obsidiansis OB47]
 gi|302574295|gb|ADL42086.1| ribonuclease PH [Caldicellulosiruptor obsidiansis OB47]
          Length = 258

 Score =  341 bits (876), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  N++R I +TR   KYAEGSCL++ G+T ++ TAT+++KVP + + +  GWIT
Sbjct: 1   MRQDQRAYNELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  R+    R  GRS EIQR+IGRALR+ ++  ALG R IIIDCDVIQ
Sbjct: 61  AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG ++A+ D  + + D   K   +  +   VAA+S G+  G  ++DL + 
Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPITDFVAAVSVGICDGVEMLDLCFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VM D G  +E+QG+AE A FS + F  +L L K  I  +I++QK+V+  
Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQKLLELGKQGIQKIIEVQKEVLGQ 238

Query: 241 E 241
           +
Sbjct: 239 D 239


>gi|237741270|ref|ZP_04571751.1| ribonuclease ph [Fusobacterium sp. 4_1_13]
 gi|229430802|gb|EEO41014.1| ribonuclease ph [Fusobacterium sp. 4_1_13]
          Length = 434

 Score =  341 bits (876), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 111/241 (46%), Positives = 160/241 (66%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T  GW+T
Sbjct: 2   LREDGRKFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+IGRALR+ +DL  LG R I IDCDVIQ
Sbjct: 62  AEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG ++AL   ++ + D   +      L  +VAAIS G +    +VDL Y 
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKLLD--EEILEENPLISNVAAISVGKINSELMVDLKYS 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   +VD N +M   G  +EVQG+ E +TF++     +L+LA++ I  LI+LQ  +I+ 
Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQDKIINQ 239

Query: 241 E 241
           E
Sbjct: 240 E 240


>gi|255657266|ref|ZP_05402675.1| ribonuclease PH [Clostridium difficile QCD-23m63]
 gi|296451893|ref|ZP_06893610.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP08]
 gi|296879712|ref|ZP_06903687.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP07]
 gi|296259275|gb|EFH06153.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP08]
 gi|296429301|gb|EFH15173.1| ribonuclease PH/Ham1 protein [Clostridium difficile NAP07]
          Length = 449

 Score =  341 bits (876), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 114/239 (47%), Positives = 157/239 (65%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R   Q+R + +TR  +KYAEGS L++ G+T ++ TA++EEKVP ++RN+  GWI A
Sbjct: 3   RSYDRSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  R+A  G+  GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQA
Sbjct: 63  EYSMLPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA+ + +  +     K      +   V+AIS G++ G  ++DL Y E
Sbjct: 123 DGGTRTASITGAFVAVAEAIYKLYKA--KTVKEMPITNFVSAISVGIVNGTHMLDLCYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS   VD N +MTD    VEVQG+ E   FS+     +L L +    +LI+LQK+ +  
Sbjct: 181 DSKAQVDMNIIMTDKCEFVEVQGTGEEKPFSRTDLNLLLELGEKGNKELIRLQKEALGE 239


>gi|239982007|ref|ZP_04704531.1| ribonuclease PH [Streptomyces albus J1074]
 gi|291453857|ref|ZP_06593247.1| ribonuclease PH [Streptomyces albus J1074]
 gi|291356806|gb|EFE83708.1| ribonuclease PH [Streptomyces albus J1074]
          Length = 241

 Score =  341 bits (876), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 115/239 (48%), Positives = 153/239 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS LV FGDT +L TA+  E VP W + +  GW+TA
Sbjct: 3   RIDGRTPAQLRPLTIERSWSKHAEGSVLVAFGDTKVLCTASFTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L G VAA+S G++   P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAISWAQGKKIIKPGRKPLTGSVAAVSVGIVGSTPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   + D N V T  G  VEVQG+AE A F +    A+L+L     ADL K Q   ++ 
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRTELDALLDLGATGCADLTKGQLAALAE 241


>gi|312882913|ref|ZP_07742645.1| ribonuclease PH [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369432|gb|EFP96952.1| ribonuclease PH [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 238

 Score =  341 bits (876), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 123/240 (51%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRLADQIRPIKMTRHYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMRREASSGKQGGRTLEIQRLIARSLRAVVDLEAMGEMMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D  + +            +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFETLVKSGKL--KHNPMKGHVAAVSVGILGQDILCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++EVQG+AE   FS+     +L++A+  IAD++K QK  + N
Sbjct: 179 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFSRQELNVLLDVAEKGIADIVKAQKLALEN 238


>gi|153956061|ref|YP_001396826.1| ribonuclease PH [Clostridium kluyveri DSM 555]
 gi|219856397|ref|YP_002473519.1| hypothetical protein CKR_3054 [Clostridium kluyveri NBRC 12016]
 gi|189043757|sp|A5N2V9|RNPH_CLOK5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808584|sp|B9DWL2|RNPH_CLOK1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|146348919|gb|EDK35455.1| RpH [Clostridium kluyveri DSM 555]
 gi|219570121|dbj|BAH08105.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 248

 Score =  341 bits (876), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 113/239 (47%), Positives = 161/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ NQ+R + +TR  +KYAEGS L++ GDT ++ TA++E+KVP +++    GWIT
Sbjct: 1   MRVDGRKCNQIRPVKITRNYTKYAEGSVLIENGDTKVICTASIEDKVPPFLKGRGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            EY M+PR+T  R  R+   GR  GR+ EIQR+IGRALRSVVDL A+G + I +DCDVIQ
Sbjct: 61  CEYNMIPRATQVRKARDINRGRIDGRTMEIQRIIGRALRSVVDLRAIGEKTIWVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA+VAL D +  +   +        ++  V+A+S G++    ++DL Y 
Sbjct: 121 ADGGTRTASISGAFVALVDAVNKLHKQNPFTIY--PIRDFVSAVSVGIVNDTRMLDLCYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD N VMTDSG  VE+QG+ E+  F+++    +L LA+  I  +I  QKD + 
Sbjct: 179 EDSRAKVDMNVVMTDSGEFVEIQGTGEQNPFTREDLKELLALAEKGIKSMISAQKDSLK 237


>gi|78049070|ref|YP_365245.1| ribonuclease PH [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325927895|ref|ZP_08189119.1| RNAse PH [Xanthomonas perforans 91-118]
 gi|123584287|sp|Q3BPR8|RNPH_XANC5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|78037500|emb|CAJ25245.1| ribonuclease PH [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325541735|gb|EGD13253.1| RNAse PH [Xanthomonas perforans 91-118]
          Length = 241

 Score =  341 bits (876), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R + + R  +++AEGS LV FGDT +L TA++E +VP ++R    GW+TA
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPGFLRGKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +    +  +    L G VAA+S G+  G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALADAVNLLIKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  + +L  LQ+  ++ 
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQRAALAG 241


>gi|149927822|ref|ZP_01916073.1| ribonuclease PH [Limnobacter sp. MED105]
 gi|149823444|gb|EDM82675.1| ribonuclease PH [Limnobacter sp. MED105]
          Length = 243

 Score =  341 bits (876), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 123/237 (51%), Positives = 166/237 (70%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR    +R ISL R  +K+AEGS +V+FGDTH+L T ++E+KVP +++    GW+TA
Sbjct: 7   RPDGRNPRALRNISLERNYTKHAEGSVMVRFGDTHVLCTCSVEDKVPGFLKGKNQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST +R+ REA  G+Q GR+QEIQR+IGRALR+ VDL+ LG R + IDCDVIQA
Sbjct: 67  EYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRAAVDLNKLGERTLKIDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VA+ D +  +   +N       +K  VAA+S G++ G  ++DL+Y E
Sbjct: 127 DGGTRTASITGAMVAVADAIGKL--IANGALPENPIKQFVAAVSVGVVNGQVVLDLNYDE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DST + D N VMT+ G  VEVQG+AE   FS++    ML+ A   I +L++LQK  +
Sbjct: 185 DSTCETDLNVVMTEKGGFVEVQGTAEGDAFSREELNGMLDSAAAGIIELVRLQKAAL 241


>gi|260770721|ref|ZP_05879651.1| ribonuclease PH [Vibrio furnissii CIP 102972]
 gi|260614302|gb|EEX39491.1| ribonuclease PH [Vibrio furnissii CIP 102972]
 gi|315178484|gb|ADT85398.1| ribonuclease PH [Vibrio furnissii NCTC 11218]
          Length = 238

 Score =  341 bits (876), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 120/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNNRAADQVRPIQITRHYTAYAEGSVLVEFGNTKVLCNATVEEGVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLEAMGELMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D    +   ++       +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFDKL--VADGKLKKNPMKGHVAAVSVGILGQDVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD++  QK  + N
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLDLLAVAKKGIADIVSAQKASLEN 238


>gi|290960058|ref|YP_003491240.1| ribonuclease [Streptomyces scabiei 87.22]
 gi|260649584|emb|CBG72699.1| putative ribonuclease [Streptomyces scabiei 87.22]
          Length = 245

 Score =  341 bits (876), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 114/237 (48%), Positives = 155/237 (65%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +++ R  SK+AEGS LV FGDT +  TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         Q L G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVSWAQGRKLIKAGRQPLTGTVSAVSVGIVGGVPLLDLRYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   D D N V T  G  VEVQG+AE   F+++   ++L+LA     +L  LQ+  +
Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFAREELNSLLDLAVSGCTELALLQRKAL 239


>gi|190149324|ref|YP_001967849.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|307244856|ref|ZP_07526955.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307253810|ref|ZP_07535664.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258266|ref|ZP_07540009.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|307262637|ref|ZP_07544267.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|226736878|sp|B3GZP5|RNPH_ACTP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189914455|gb|ACE60707.1| ribonuclease PH [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|306854301|gb|EFM86507.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306863294|gb|EFM95234.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867726|gb|EFM99571.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306872060|gb|EFN03774.1| Ribonuclease PH [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 238

 Score =  341 bits (876), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ+R + +TR  ++YAEGS LV+FG+T +L  AT+EE VP +++  + GW+T
Sbjct: 1   MRPNNRELNQVRPVKITRHYTRYAEGSVLVEFGETKVLCNATVEETVPRFLKGQQQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR+VVDL ALG R + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAVVDLKALGERTVTVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VALHD +  +   ++       +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALHDAMSKL--VADGVLKENPMKGLVAAISVGIVDGNAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G +VEVQG+AE   FS      +L+LA   I  L+  Q+  + 
Sbjct: 179 EDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHMELLQLLDLAHQGINQLLDAQRKALG 237


>gi|291485267|dbj|BAI86342.1| ribonuclease PH [Bacillus subtilis subsp. natto BEST195]
          Length = 245

 Score =  341 bits (876), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 110/243 (45%), Positives = 158/243 (65%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GRQ +++R I+       + EGS L+  G+T ++  A++E++VP ++R    GWIT
Sbjct: 1   MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL  LG R I IDCDVIQ
Sbjct: 61  AEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA++A+   +  +         +  +   +AAIS G+      ++DL+Y
Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLIKAGTI--KTSPITDFLAAISVGIDKEQGILLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS+ +VD N +MT SG  VE+QG+ E ATFS++    +L LA+  I +LI  QK+V+ 
Sbjct: 179 EEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLG 238

Query: 240 NEV 242
           + +
Sbjct: 239 DSL 241


>gi|187933801|ref|YP_001884652.1| ribonuclease PH [Clostridium botulinum B str. Eklund 17B]
 gi|226736899|sp|B2TJ05|RNPH_CLOBB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|187721954|gb|ACD23175.1| tRNA nucleotidyltransferase [Clostridium botulinum B str. Eklund
           17B]
          Length = 249

 Score =  341 bits (876), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 110/239 (46%), Positives = 155/239 (64%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+  Q+R + +TR  +KYAEGS  ++ GDT +L   ++E+KVP +++ T  GWIT
Sbjct: 1   MRIDGRKNEQIRHVKVTRHYTKYAEGSVYIEVGDTKVLCNVSIEDKVPPFMKGTGSGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST  R  R+    +  GR+ EIQR+IGRALRSVVDL ALG + + IDCDVIQ
Sbjct: 61  AEYNMLPRSTETRKIRDIARLKIDGRTMEIQRLIGRALRSVVDLKALGEKTLWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT AI+GA++AL D +  +            ++  VAA+S G++    I+DL Y 
Sbjct: 121 ADGGTRTTAISGAFIALVDAVNKLHKIKPFKIY--PIRSFVAAVSVGIVNEEKILDLCYQ 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD N +MTD G  VEVQG+ E + +++     +L+L +  I  +I +QK+ + 
Sbjct: 179 EDSKAKVDMNIIMTDEGSFVEVQGTGEESPYTRAELNELLDLGEKGIKQMINVQKESLK 237


>gi|114769782|ref|ZP_01447392.1| ribonuclease PH [alpha proteobacterium HTCC2255]
 gi|114549487|gb|EAU52369.1| ribonuclease PH [alpha proteobacterium HTCC2255]
          Length = 237

 Score =  341 bits (876), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 133/239 (55%), Positives = 172/239 (71%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  + MR I +    +K+AEGSCL+K GDTH+L TA++E++ P W+RNT  GW+T
Sbjct: 1   MRPSGRAIDIMRPIEVEVGFTKHAEGSCLIKCGDTHVLCTASVEDRTPPWLRNTGMGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R +REA SG+Q GR+QEIQR+IGR+LR+ +D   LG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRSTGSRNRREAASGKQSGRTQEIQRLIGRSLRAGIDRLTLGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG W+AL   +  M    +       L  HVAA+SCG+  G PI+DLDY 
Sbjct: 121 ADGGTRCASITGGWIALRLAINAMIKAGDL--KEDPLTEHVAAVSCGIYGGQPILDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    DANFVMT S  +VE+QGSAE ATF +  F ++++LA+  I++LI  QK  IS
Sbjct: 179 EDSEAGTDANFVMTGSNGLVEIQGSAEGATFDRTEFNSLMDLAEKGISELIIAQKAAIS 237


>gi|253991850|ref|YP_003043206.1| ribonuclease PH [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253783300|emb|CAQ86465.1| ribonuclease ph [Photorhabdus asymbiotica]
          Length = 237

 Score =  341 bits (876), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 118/239 (49%), Positives = 157/239 (65%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R I++TR  +K+AEGS LV+FGDT +L  A++EE VP +++    GWIT
Sbjct: 1   MRPAGRAAEQVRPITITRHYTKHAEGSVLVEFGDTKVLCNASVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRNAREAARGKQGGRTMEIQRLIARSLRAAVDLKKLGEYTVTLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  M +          LK  VAA+S G++      DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALNKMVEAGKL--KENPLKSMVAAVSVGIVDNEGRCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G ++EVQG+AE   FS D   ++L+LAK  +  +   Q+  + 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELLSLLSLAKGGLETIFAAQRTALK 237


>gi|166713272|ref|ZP_02244479.1| ribonuclease PH [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 241

 Score =  341 bits (876), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 121/239 (50%), Positives = 161/239 (67%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R + + R  +++AEGS LV FGDT +L TA++E +VP ++R    GW+TA
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPNFLRGKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRT AITGA+VAL D +  +       +    L G VAA+S G+  G P++DLDY E
Sbjct: 125 DGGTRTTAITGAYVALADAVNLLLKRGEIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  + +L  LQ+  ++ 
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGELFALQRAALAG 241


>gi|90407865|ref|ZP_01216041.1| putative ribonuclease PH [Psychromonas sp. CNPT3]
 gi|90311040|gb|EAS39149.1| putative ribonuclease PH [Psychromonas sp. CNPT3]
          Length = 239

 Score =  341 bits (876), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 118/241 (48%), Positives = 155/241 (64%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q REI +TR  + YAEGS L++ G+T +L  A++ + VP +++    GW+T
Sbjct: 1   MRPSKRTPEQNREIKITRNFTDYAEGSVLIEIGNTKVLCNASVSDSVPRFLKGKGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +REA  G+QGGR+ EIQR+I R+LR+ VDL A G   I +DCDVIQ
Sbjct: 61  AEYAMLPRATHTRNQREAAKGKQGGRTLEIQRLIARSLRAAVDLDAFGENMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +AL D L  M       +    LK  +AA+S G+    P+ DLDY 
Sbjct: 121 ADGGTRTASITGACIALADALNWMVKEGKIKK--SPLKQMIAAVSVGIYKDTPVCDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS    D N VMT+ G ++E+QG+AE   FS +   AML+LAK  I  LI  QK  ++ 
Sbjct: 179 EDSNAQTDMNVVMTEDGGMIEIQGTAEDGAFSHEQLLAMLSLAKGGIDKLIVEQKKALTG 238

Query: 241 E 241
           E
Sbjct: 239 E 239


>gi|239622472|ref|ZP_04665503.1| ribonuclease PH [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|61216065|sp|Q8G7I0|RNPH_BIFLO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|239514469|gb|EEQ54336.1| ribonuclease PH [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 248

 Score =  341 bits (875), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 107/239 (44%), Positives = 157/239 (65%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R + +TR  +   EGS L++ G+T ++ TAT    VP W +++  GW+T
Sbjct: 8   IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 67

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR V+D+ ALG  QI +DCDV+Q
Sbjct: 68  AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 127

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA+VAL D +   E   +    S+VLK +V+A+S G++ G P++DL Y 
Sbjct: 128 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 187

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N  MT SG  +E+QG+AE   F++     +L+LA+    +L   Q+  +S
Sbjct: 188 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 246


>gi|92115321|ref|YP_575249.1| ribonuclease PH [Chromohalobacter salexigens DSM 3043]
 gi|91798411|gb|ABE60550.1| RNAse PH [Chromohalobacter salexigens DSM 3043]
          Length = 245

 Score =  341 bits (875), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 126/239 (52%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ +Q REI+L R  +++AEGS LV FGDT +L  A++E  VP W+R  + GWIT
Sbjct: 6   MRPSGRQPDQPREITLERGYTRHAEGSVLVSFGDTKVLCNASVEAGVPRWLRGKQQGWIT 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+IGR+LR+VVDL  LG   I +DCDVIQ
Sbjct: 66  AEYGMLPRATHTRGGREATRGKQGGRTLEIQRLIGRSLRTVVDLKKLGEFTITVDCDVIQ 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG  VAL D + H++    K       K  V+++S G+  G P+VDLDY 
Sbjct: 126 ADGGTRTASITGGCVALVDAIHHLQR--EKLIKKDPFKQLVSSVSVGIFKGQPVVDLDYP 183

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST   D N VM + G ++EVQG+AE ATF++    AML+LA+     L   Q++ + 
Sbjct: 184 EDSTAGTDMNVVMAEDGGLIEVQGTAETATFTRQELNAMLDLAEGAGRQLFAHQREALG 242


>gi|256846413|ref|ZP_05551870.1| ribonuclease ph [Fusobacterium sp. 3_1_36A2]
 gi|256718182|gb|EEU31738.1| ribonuclease ph [Fusobacterium sp. 3_1_36A2]
          Length = 434

 Score =  341 bits (875), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 111/241 (46%), Positives = 160/241 (66%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T  GW+T
Sbjct: 2   LREDGRKFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+IGRALR+ +DL  LG R I IDCDVIQ
Sbjct: 62  AEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG ++AL   ++ + D   +      L  +VAAIS G +    +VDL Y 
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKLLD--EEILEENPLISNVAAISVGKINSELMVDLKYS 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   +VD N +M   G  +EVQG+ E +TF++     +L+LA++ I  LI+LQ  +I+ 
Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQDKIINQ 239

Query: 241 E 241
           E
Sbjct: 240 E 240


>gi|148251804|ref|YP_001236389.1| ribonuclease PH [Bradyrhizobium sp. BTAi1]
 gi|166228266|sp|A5E8I9|RNPH_BRASB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|146403977|gb|ABQ32483.1| RNAse PH [Bradyrhizobium sp. BTAi1]
          Length = 237

 Score =  341 bits (875), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 137/239 (57%), Positives = 183/239 (76%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R +SL R V KYAEGSCLVKFGDTH+L TATLE+++P W++    GWIT
Sbjct: 1   MRPSRRAPDELRPVSLERGVVKYAEGSCLVKFGDTHVLVTATLEDRLPPWLKGQGRGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+ EIQR+IGR+LR+ +DL ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATLERTRREASAGKQTGRTVEIQRLIGRSLRTAIDLEALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DC++ M+  +     ++VL+ +VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALADCIKWMK--TRNMLKTEVLRANVAAISCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFVMT  G I+EVQG+AE+  F++  F A++ LA+  +A L+ LQK  ++
Sbjct: 179 EDSEAETDANFVMTGDGRIIEVQGTAEKTPFTEAEFLALMALARKGVARLVDLQKMAVA 237


>gi|91974875|ref|YP_567534.1| ribonuclease PH [Rhodopseudomonas palustris BisB5]
 gi|123735818|sp|Q13E56|RNPH_RHOPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|91681331|gb|ABE37633.1| RNAse PH [Rhodopseudomonas palustris BisB5]
          Length = 237

 Score =  341 bits (875), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 141/239 (58%), Positives = 181/239 (75%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R +SL R V KYAEGSCLVKFGDTH+L TATLEE++P W++    GW+T
Sbjct: 1   MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+ EIQR+IGR+LR++VDL ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATLERTRREAAAGKQNGRTVEIQRLIGRSLRAIVDLQALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DCL  M+  +       VL+ +VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALADCLGWMK--TRNMIKGTVLRDNVAAISCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFVMT  G I+EVQG+AE+  FSQD F A++ LA+  +  L+ LQK  ++
Sbjct: 179 EDSEAETDANFVMTGDGRIIEVQGTAEKTPFSQDEFLALMALAQKGVTRLVDLQKMAVA 237


>gi|319786148|ref|YP_004145623.1| ribonuclease PH [Pseudoxanthomonas suwonensis 11-1]
 gi|317464660|gb|ADV26392.1| ribonuclease PH [Pseudoxanthomonas suwonensis 11-1]
          Length = 241

 Score =  341 bits (875), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 120/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R SGR  +Q+R + + R  +++AEGS LV FGDT +L TA+++ KVP ++R    GW+T
Sbjct: 4   VRPSGRAPDQLRPVRIERGFTRHAEGSVLVSFGDTRVLCTASIDNKVPAFLRGKGEGWVT 63

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+IGR LR+ +D  ALG R I +DCDV+Q
Sbjct: 64  AEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRTLRACIDRGALGERTITLDCDVLQ 123

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D ++ ++           + G VAA+S G+  G P++DLDY 
Sbjct: 124 ADGGTRTAAITGAYVALVDAVRWLQ--GRGEIKRDPVFGAVAAVSVGVYRGVPVLDLDYA 181

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  I  L++LQ+  ++ 
Sbjct: 182 EDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLALAETGIGQLLELQRQALAG 241


>gi|237813382|ref|YP_002897833.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei MSHR346]
 gi|237506567|gb|ACQ98885.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei MSHR346]
          Length = 243

 Score =  341 bits (875), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 125/239 (52%), Positives = 172/239 (71%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R SGR+ +Q+R++ +TR  +K+AEG+ LV+FGDT ++ TA++ E+VP ++R    GW+T
Sbjct: 6   LRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLT 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQ
Sbjct: 66  AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQ 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA HD +  +            +  +VAAIS G+  G P++DLDYG
Sbjct: 126 ADGGTRTASITGAFVAAHDAVTKLVAAGRI--ARSPITDYVAAISVGVFGGTPVLDLDYG 183

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT +G  VEVQG+AE A FS+    A+L+LA+  I +L++LQ+  + 
Sbjct: 184 EDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAALE 242


>gi|188588196|ref|YP_001919836.1| ribonuclease PH [Clostridium botulinum E3 str. Alaska E43]
 gi|251780372|ref|ZP_04823292.1| tRNA nucleotidyltransferase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|226736898|sp|B2UZ31|RNPH_CLOBA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|188498477|gb|ACD51613.1| ribonuclease PH [Clostridium botulinum E3 str. Alaska E43]
 gi|243084687|gb|EES50577.1| tRNA nucleotidyltransferase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 249

 Score =  341 bits (875), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 110/239 (46%), Positives = 155/239 (64%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+  Q+R + +TR  +KYAEGS  ++ GDT +L   ++E+KVP +++ T  GWIT
Sbjct: 1   MRIDGRKNEQIRHVKVTRHYTKYAEGSVYIEVGDTKVLCNVSIEDKVPPFMKGTGSGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST  R  R+    +  GR+ EIQR+IGRALRSVVDL ALG + + IDCDVIQ
Sbjct: 61  AEYNMLPRSTETRKIRDIARLKIDGRTMEIQRLIGRALRSVVDLKALGEKTLWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT AI+GA++AL D +  +            ++  VAA+S G++    I+DL Y 
Sbjct: 121 ADGGTRTTAISGAFIALVDAVNKLHKIKPFKIY--PIRSFVAAVSVGIVNEEKILDLCYQ 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD N +MTD G  VEVQG+ E + +++     +L+L +  I  +I +QK+ + 
Sbjct: 179 EDSKAKVDMNIIMTDEGSFVEVQGTGEESPYTRTELNELLDLGEKGIKQMINVQKESLK 237


>gi|118594148|ref|ZP_01551495.1| tRNA nucleotidyltransferase [Methylophilales bacterium HTCC2181]
 gi|118439926|gb|EAV46553.1| tRNA nucleotidyltransferase [Methylophilales bacterium HTCC2181]
          Length = 240

 Score =  341 bits (875), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 118/241 (48%), Positives = 164/241 (68%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R I   R  +K+AEGS LVK GDTH++  A++EE VP +++    GW+T
Sbjct: 1   MRASNRNADELRPIEFIRSYTKHAEGSVLVKCGDTHVICNASIEENVPSFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ RE+  G+Q GR+QEIQR+IGR+LR+++DL  LG R I IDCDVIQ
Sbjct: 61  AEYGMLPRSTSSRMGRESSRGKQSGRTQEIQRLIGRSLRAIIDLKKLGERTIFIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+G++VALHD ++ +   SNK      +   +AAIS G+     ++DLDY 
Sbjct: 121 ADGGTRTASISGSYVALHDAIEFL--LSNKKITESPIIDSIAAISAGIKGADILLDLDYS 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D NFVMT  G  VE+QG+AE   F++D    + N+A   I  +I +Q + +  
Sbjct: 179 EDSECDTDMNFVMTGKGSFVEIQGTAEGIPFTKDEMDQLTNVASKGIQSIINIQSEALDK 238

Query: 241 E 241
           +
Sbjct: 239 K 239


>gi|170742381|ref|YP_001771036.1| ribonuclease PH [Methylobacterium sp. 4-46]
 gi|226736918|sp|B0UP55|RNPH_METS4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|168196655|gb|ACA18602.1| ribonuclease PH [Methylobacterium sp. 4-46]
          Length = 237

 Score =  341 bits (875), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 134/239 (56%), Positives = 177/239 (74%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R+++L + V++YAEGSCLV FG+T +L TA+LEE+ P W+R +  GW+T
Sbjct: 1   MRPSKRAPDELRKVTLEKGVARYAEGSCLVTFGETKVLCTASLEERGPPWLRGSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE  +G+  GR+QEIQR+IGR+LR+VV+L A+G RQI++DCDV+Q
Sbjct: 61  AEYAMLPRATHERNRREVTAGKPSGRTQEIQRLIGRSLRAVVNLPAIGERQIVVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVALH+C   M            ++ HVAAISCG+  G PI+DLDY 
Sbjct: 121 ADGGTRTASITGAWVALHECFTWMR--GRSIISVDPMRDHVAAISCGIHKGIPILDLDYD 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D DANFV+T SG IVEVQG+AE A FS++ F  +L LAK  +A L+ LQK  + 
Sbjct: 179 EDSAADTDANFVITGSGGIVEVQGTAEIAPFSEEQFLGLLRLAKAGVAQLVALQKQAVG 237


>gi|145628603|ref|ZP_01784403.1| ribonuclease PH [Haemophilus influenzae 22.1-21]
 gi|144979073|gb|EDJ88759.1| ribonuclease PH [Haemophilus influenzae 22.1-21]
          Length = 238

 Score =  341 bits (875), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ R+I +TR  +K+AEGS LV+FGDT +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  + +  N    +  +KG V+AIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGAAVALCDAINGLIE--NGTLKTNPIKGLVSAISVGIVEGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G ++EVQG+A    FS +    +L+LAK     +   Q++ + 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAGSEPFSHEELLTLLDLAKQGCNQIFIAQREALG 237


>gi|310657898|ref|YP_003935619.1| nucleoside-triphosphatase [Clostridium sticklandii DSM 519]
 gi|308824676|emb|CBH20714.1| Nucleoside-triphosphatase [Clostridium sticklandii]
          Length = 443

 Score =  341 bits (875), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 117/234 (50%), Positives = 164/234 (70%), Gaps = 2/234 (0%)

Query: 9   NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
           N +REI +T+  +KYAEGS L++FGDT +L  A++EEKVP +++NT  GWI+AEY MLPR
Sbjct: 6   NMLREIKITKNFTKYAEGSVLIEFGDTVVLCNASIEEKVPPFLKNTGTGWISAEYSMLPR 65

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
           ST  R  R++  G+  GR+ EIQR+IGRALRSVVD+  LG R I IDCDV+QADGGTRTA
Sbjct: 66  STHQRKIRDSARGKIDGRTHEIQRLIGRALRSVVDMKVLGERTIWIDCDVLQADGGTRTA 125

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           +ITGA+VAL D +  + +   +   S  +   V+A+S G++ G P++DL Y EDS+ +VD
Sbjct: 126 SITGAFVALCDAMAKLYE--KEAIKSFPINAFVSAVSVGIVKGKPVLDLCYEEDSSAEVD 183

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            N VMTD G  +EVQG+ E+  FS++    +L+LA+     L+K+Q+  I   +
Sbjct: 184 MNVVMTDKGEFIEVQGTGEQHPFSKNQLMQLLDLAQQGNEQLMKIQRRAIGEPI 237


>gi|117923369|ref|YP_863986.1| ribonuclease PH [Magnetococcus sp. MC-1]
 gi|117607125|gb|ABK42580.1| RNAse PH [Magnetococcus sp. MC-1]
          Length = 243

 Score =  341 bits (875), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 131/240 (54%), Positives = 171/240 (71%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+SGR+ ++MR +++TR  +K+AEGSCL+ FGDT +L TAT+EE  P W+RN   GW+T
Sbjct: 5   LRISGRRPDEMRAVTITRHYTKHAEGSCLIAFGDTQVLCTATVEESQPRWMRNEDRGWVT 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+ EIQR+IGRA+R+VVDL ALG R I +DCDVIQ
Sbjct: 65  AEYGMLPRSTNVRMGREAAKGKQSGRTLEIQRLIGRAMRAVVDLQALGKRTIWLDCDVIQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA+HD +  +            L+ HVAA+SCGM+ G P +DLDY 
Sbjct: 125 ADGGTRTASITGAFVAMHDAVTGLLKAG--LIRHNPLRDHVAAVSCGMVAGMPALDLDYQ 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D NFVMT +G  VE+QG+AE   F++  F +M  LA   I  L++ QK  +  
Sbjct: 183 EDSRCDTDMNFVMTGAGGFVEIQGTAEGVPFTRPEFESMAALADQGIKALVQAQKLALLK 242


>gi|161170278|gb|ABX59248.1| RNase PH [uncultured marine bacterium EB000_55B11]
 gi|297183806|gb|ADI19929.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 252

 Score =  340 bits (874), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 132/239 (55%), Positives = 171/239 (71%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  + MR I +    +K+AEGSCL+K GDTH+L TA++ ++ P W+RNT  GW+T
Sbjct: 16  MRPSGRAIDIMRPIEVEVGFTKHAEGSCLIKCGDTHVLCTASVXDRTPPWLRNTGMGWVT 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R +REA SG+Q GR+QEIQR+IGR+LR+ +D   LG RQI +DCDV+Q
Sbjct: 76  AEYGMLPRSTGSRNRREAASGKQSGRTQEIQRLIGRSLRAGIDRLTLGERQITVDCDVLQ 135

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG W+AL   +  M    +       L  HVAA+SCG+  G PI+DLDY 
Sbjct: 136 ADGGTRCASITGGWIALRLAINAMIKAGDL--KEDPLTEHVAAVSCGIYGGQPILDLDYA 193

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    DANFVMT S  +VE+QGSAE ATF +  F ++++LA+  I++LI  QK  IS
Sbjct: 194 EDSEAGTDANFVMTGSNGLVEIQGSAEGATFDRTEFNSLMDLAEKGISELIIAQKAAIS 252


>gi|89900419|ref|YP_522890.1| ribonuclease PH [Rhodoferax ferrireducens T118]
 gi|89345156|gb|ABD69359.1| RNAse PH [Rhodoferax ferrireducens T118]
          Length = 243

 Score =  340 bits (874), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 126/241 (52%), Positives = 169/241 (70%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+  R  NQ+R + + R  + +AEGS L++FG+T +L TA++EEKVP   + +  GW+T
Sbjct: 5   LRVGARAANQLRAVKIQRGYTMHAEGSVLIEFGNTKVLCTASVEEKVPAHKKGSGQGWVT 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+Q GR+QEIQR+IGRALRSV DLS LG R I +DCDV+Q
Sbjct: 65  AEYGMLPRATHSRNEREAARGKQSGRTQEIQRLIGRALRSVFDLSLLGERTIHLDCDVLQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VA  D +  +            ++ HVAAIS G++ G P++DL+Y 
Sbjct: 125 ADGGTRTAAITGAFVAAQDAVTQLLMQGKLQL--SPIRDHVAAISVGIVDGTPLLDLEYT 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT +G  VEVQG+AE A FS+    A+L LA+  I+DL+ LQK  + N
Sbjct: 183 EDSACDTDMNVVMTGAGQFVEVQGTAEGAAFSRREMDALLALAEQGISDLVALQKISLLN 242

Query: 241 E 241
           +
Sbjct: 243 K 243


>gi|326559598|gb|EGE10012.1| ribonuclease PH [Moraxella catarrhalis 7169]
 gi|326567722|gb|EGE17828.1| ribonuclease PH [Moraxella catarrhalis BC1]
          Length = 238

 Score =  340 bits (874), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 126/239 (52%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + RQ N++R I   R+ +K+AEGS LV FGDT +L TA++E  VP W++    GW+T
Sbjct: 1   MRSNNRQNNELRPIHFIRQYTKHAEGSVLVCFGDTKVLCTASIEAGVPRWLKGQGKGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R +REA  G+Q GR+QEIQR+IGR+LR+++DLS LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRATGTRTQREAARGKQSGRTQEIQRLIGRSLRAMLDLSKLGENTIYIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L+H++    K      L G VAA+S G+  G  ++DLDY 
Sbjct: 121 ADGGTRTASISGAAVALIDALEHLQR--RKKLTQDPLLGLVAAVSVGVNQGRVLLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST D D N VM  +G  +E+QG+AE   F++    AML+LA+  I  +I+ QK V+ 
Sbjct: 179 EDSTCDTDLNVVMMQAGGFIEIQGTAEEKPFTRAEANAMLDLAELGIGQIIEAQKQVLG 237


>gi|148927584|ref|ZP_01811056.1| ribonuclease PH [candidate division TM7 genomosp. GTL1]
 gi|147887071|gb|EDK72567.1| ribonuclease PH [candidate division TM7 genomosp. GTL1]
          Length = 244

 Score =  340 bits (874), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 126/236 (53%), Positives = 171/236 (72%), Gaps = 2/236 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MRL+ R  N++REI++TR+ +K+AEGS LV FGDT ++ TA++   VP ++++   GW+T
Sbjct: 6   MRLANRANNKLREINITRKFTKHAEGSVLVTFGDTKVICTASVTNGVPPFLKDKGQGWVT 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R++REA  G+Q GR+QEIQR+I R+LR+ VDL+A+G   I IDCDVIQ
Sbjct: 66  AEYGMLPRSTHERMQREAAKGKQVGRTQEIQRLIARSLRAAVDLTAMGENTITIDCDVIQ 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG  VALHD LQ++ +   K   +   +  VA++S G++ G P++DLDY 
Sbjct: 126 ADGGTRTAAITGGCVALHDALQYLTE--KKQLATNPFQQFVASVSVGIINGEPMLDLDYQ 183

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           EDS  D D N VMT+ G  +EVQG+AE+  F Q    A+L+LAK  I +L K+QK 
Sbjct: 184 EDSNADTDMNVVMTEQGGFIEVQGTAEKTVFQQSELDALLHLAKQGITELTKMQKQ 239


>gi|241767033|ref|ZP_04764818.1| ribonuclease PH [Acidovorax delafieldii 2AN]
 gi|241362436|gb|EER58380.1| ribonuclease PH [Acidovorax delafieldii 2AN]
          Length = 243

 Score =  340 bits (874), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 123/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R + +TRR + +AEGS L++FG+T +L TA++E+KVP   R T  GW+T+
Sbjct: 6   RSGGRAADQLRPVRITRRYTMHAEGSVLIEFGNTQVLCTASVEDKVPPHQRGTGEGWVTS 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V DL  LG R I +DCDVIQA
Sbjct: 66  EYGMLPRATHKRSDREAAKGKQSGRTQEIQRLIGRSLRAVFDLRLLGERTIQLDCDVIQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGAWVA  D +  +   ++    +  ++G VAAIS G++ G P++DL+Y E
Sbjct: 126 DGGTRTAAITGAWVAAQDAVNQL--LASGKITASPIRGSVAAISVGIVQGTPLLDLEYAE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D   D D N VMT +GH VEVQG+AE A F++     +L LA+  IA+L+ LQ+  +  +
Sbjct: 184 DVGCDTDMNVVMTGAGHFVEVQGTAEGAAFTRAEMDQLLGLAEKGIAELVALQQQSLLKQ 243


>gi|292490867|ref|YP_003526306.1| ribonuclease PH [Nitrosococcus halophilus Nc4]
 gi|291579462|gb|ADE13919.1| ribonuclease PH [Nitrosococcus halophilus Nc4]
          Length = 239

 Score =  340 bits (874), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 123/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +++R I LTR  +KYAEGS LV+FGDT ++ TA++E++VP +++    GW+T
Sbjct: 1   MRPSGRAPDELRPIRLTRHYTKYAEGSVLVEFGDTRVICTASVEDRVPRFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  GRQGGR+ EIQR+IGR+LR++VDLSALG   + IDCDVIQ
Sbjct: 61  AEYGMLPRSTNIRMGREAAQGRQGGRTMEIQRLIGRSLRAIVDLSALGEITVTIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D +  +     +      + G VA++S G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAYVALVDAVGSL--LKKRVIAHSPIHGQVASVSVGICEGRPVLDLDYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDST + D N +M ++G  +E+QG+AE   F  +   AML LAK  I  L+  Q + ++ 
Sbjct: 179 EDSTAETDMNVIMNEAGGFIEIQGTAEGHAFRMNELQAMLELAKSGIGTLLAKQTEALAK 238


>gi|289422671|ref|ZP_06424511.1| tRNA nucleotidyltransferase [Peptostreptococcus anaerobius 653-L]
 gi|289156850|gb|EFD05475.1| tRNA nucleotidyltransferase [Peptostreptococcus anaerobius 653-L]
          Length = 475

 Score =  340 bits (874), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 110/239 (46%), Positives = 159/239 (66%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R++ +TR  +KY+ GS L++ G+T ++ TA++EE VP +++    GWITA
Sbjct: 26  RPDGRSLDQIRDVKITRNYTKYSAGSVLIEVGNTKVICTASIEEGVPHFMKGAGSGWITA 85

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R KR++  G+  GRSQEIQR+IGR++RSVVD+ ALG R I IDCDVIQA
Sbjct: 86  EYSMLPSATESRKKRDSSKGKVDGRSQEIQRLIGRSIRSVVDMEALGERTIWIDCDVIQA 145

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D L  +       ++   +K  +AAIS G++     +D+ Y E
Sbjct: 146 DGGTRTASITGAYVALADALYKLYKSGQIKKM--PVKNLLAAISIGIIDDEVRLDICYEE 203

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS   VD N VM + G  +E+QG+ E   F++D    +L LA+    DL++LQ+  +  
Sbjct: 204 DSKAMVDTNVVMNNRGEFIEIQGTGEERPFTRDELSRILELAEKGNRDLMRLQRQALGE 262


>gi|206889521|ref|YP_002249186.1| ribonuclease PH [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|226736948|sp|B5YFY8|RNPH_THEYD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|206741459|gb|ACI20516.1| ribonuclease PH [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 236

 Score =  340 bits (874), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 113/233 (48%), Positives = 163/233 (69%), Gaps = 2/233 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+ +++R I + +   K A+GS L++ G+T ++ TA++E KVP ++++ K GWIT
Sbjct: 1   MRPDGRKNDELRPIKIEKNFIKNADGSVLIELGNTRVICTASIENKVPPFLKDQKKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ RE+ SGR GGR+ EIQR+IGR LR+VVDL  LG R I IDCDVI+
Sbjct: 61  AEYGMLPRSTPVRMLRESTSGRVGGRTHEIQRLIGRTLRAVVDLEKLGERTIWIDCDVIE 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG ++AL + ++   +          +K  +AAIS G++ G P +DL Y 
Sbjct: 121 ADGGTRTASITGGYIALVEAVKKAMNAG--MITENPIKDSIAAISVGIVLGEPRLDLCYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           EDS  +VD N VMT SG  +E+QG+AE   FS+++   +L+LA+  I ++I++
Sbjct: 179 EDSQAEVDMNIVMTGSGKFIEIQGTAEIYPFSKENLLQLLSLAEKGIREIIRV 231


>gi|86747551|ref|YP_484047.1| ribonuclease PH [Rhodopseudomonas palustris HaA2]
 gi|123099251|sp|Q2J324|RNPH_RHOP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|86570579|gb|ABD05136.1| RNAse PH [Rhodopseudomonas palustris HaA2]
          Length = 237

 Score =  340 bits (874), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 143/239 (59%), Positives = 183/239 (76%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R +SL R V KYAEGSCLVKFGDTH+L TATLEE++P W++    GW+T
Sbjct: 1   MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+ EIQR+IGR+LR++VDL ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATLERTRREAAAGKQNGRTVEIQRLIGRSLRTIVDLQALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DCL  M+  +      QV++ +VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALADCLAWMK--TRNMLKGQVMRDNVAAISCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFVMT  G IVEVQG+AE+  FSQD F A++ LA+  +A L+ LQK  ++
Sbjct: 179 EDSEAETDANFVMTGDGRIVEVQGTAEKTPFSQDEFLALMALAQKGVARLVDLQKMAVA 237


>gi|25028957|ref|NP_739011.1| ribonuclease PH [Corynebacterium efficiens YS-314]
 gi|259508022|ref|ZP_05750922.1| tRNA nucleotidyltransferase [Corynebacterium efficiens YS-314]
 gi|61216064|sp|Q8FMU8|RNPH_COREF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|23494244|dbj|BAC19211.1| putative ribonuclease [Corynebacterium efficiens YS-314]
 gi|259164363|gb|EEW48917.1| tRNA nucleotidyltransferase [Corynebacterium efficiens YS-314]
          Length = 245

 Score =  340 bits (874), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 109/238 (45%), Positives = 157/238 (65%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++QMR + +TR  +    GS L++FG+T ++ TA++E  VP + R++  GW+TA
Sbjct: 9   RADGRAQDQMRTVKITRGFTTNPAGSVLIEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE+++G+  GR+ EI R+IGR+LR+ VDLS LG   I IDCDV+QA
Sbjct: 69  EYAMLPAATAERNRRESMAGKVKGRTHEISRLIGRSLRAAVDLSQLGENTIAIDCDVLQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D ++ +++          L   VAA+S G++ G P +DL Y E
Sbjct: 129 DGGTRTAAITGAYVALADAIRVLKE--QGVVPGDPLLPPVAAVSVGLIDGQPCLDLPYEE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   DVD N VMT+SG  VE+QG+ E  TF++     ML++A+    +L+  QK  + 
Sbjct: 187 DVRADVDMNVVMTESGEFVEIQGTGEETTFTRAQLNEMLDIAEKGCRELVHAQKAALG 244


>gi|295706788|ref|YP_003599863.1| ribonuclease PH [Bacillus megaterium DSM 319]
 gi|294804447|gb|ADF41513.1| ribonuclease PH [Bacillus megaterium DSM 319]
          Length = 248

 Score =  340 bits (873), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 113/238 (47%), Positives = 163/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MRL GR+ N++R +SL     K+ EGS L+  GDT ++ TA+++++VP ++R    GWIT
Sbjct: 1   MRLDGREFNELRSVSLHTSYLKHPEGSVLISVGDTKVICTASIDDRVPPFMRGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALRSVVDL  +G + I IDCDVIQ
Sbjct: 61  AEYSMLPRATAQRNIRESSKGKVTGRTMEIQRLIGRALRSVVDLEKVGEKTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA+      + + +   ++   ++ ++AA S G+     I+DL+Y 
Sbjct: 121 ADGGTRTASITGAFVAMVLAFGKLVEENKLTEI--PIRDYLAATSVGIHGENSILDLNYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDST +VD N VMT SG  VE+QG+ E +TFS++    +L+L +  +  LI+ QK+V+
Sbjct: 179 EDSTAEVDMNIVMTGSGQFVELQGTGEESTFSREQLNHLLDLGEKGVYQLIEQQKEVL 236


>gi|126700927|ref|YP_001089824.1| ribonuclease PH [Clostridium difficile 630]
 gi|115252364|emb|CAJ70205.1| Bifunctional enzyme, tRNA nucleotidyltransferase ;
           Nucleoside-triphosphatase [Clostridium difficile]
          Length = 449

 Score =  340 bits (873), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 113/239 (47%), Positives = 157/239 (65%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R   Q+R + +TR  +KYAEGS L++ G+T ++ TA++EEKVP ++RN+  GWI A
Sbjct: 3   RSYDRSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  R+A  G+  GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQA
Sbjct: 63  EYSMLPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA+ + +  +     K      +   V+AIS G++ G  ++DL Y E
Sbjct: 123 DGGTRTASITGAFVAVAEAIYKLYKA--KTIKEMPITNFVSAISVGIVNGIHMLDLCYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS   VD N +MTD    VEVQG+ E   FS+     +L L +    +LI+LQ++ +  
Sbjct: 181 DSKAQVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREALGE 239


>gi|34763588|ref|ZP_00144521.1| RIBONUCLEASE PH; NUCLEOSIDE-TRIPHOSPHATASE [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27886731|gb|EAA23871.1| RIBONUCLEASE PH; NUCLEOSIDE-TRIPHOSPHATASE [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 434

 Score =  340 bits (873), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 110/241 (45%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ ++ R+I +T+ V+ YAEGS L++ G+T ++ TA++ +KVP ++R T  GW+T
Sbjct: 2   LREDGRKFDEERKIKITKDVNIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+IGRALR+ +DL  LG R I IDCDVIQ
Sbjct: 62  AEYSMLPRATNERNPREASKGKLSGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG ++AL   ++ + D   +      L  +VAAIS G +    +VDL Y 
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKLLD--EEILEENPLISNVAAISVGKINSELMVDLKYS 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   +VD N +M   G  +EVQG+ E +TF++     +L+LA++ I   I+LQ  +I+ 
Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRFIELQDKIINQ 239

Query: 241 E 241
           E
Sbjct: 240 E 240


>gi|255308380|ref|ZP_05352551.1| ribonuclease PH [Clostridium difficile ATCC 43255]
          Length = 449

 Score =  340 bits (873), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 113/239 (47%), Positives = 157/239 (65%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R   Q+R + +TR  +KYAEGS L++ G+T ++ TA++EEKVP ++RN+  GWI A
Sbjct: 3   RSYDRSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  R+A  G+  GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQA
Sbjct: 63  EYSMLPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA+ + +  +     K      +   V+AIS G++ G  ++DL Y E
Sbjct: 123 DGGTRTASITGAFVAVAEAIYKLYKA--KTIKEMPITNFVSAISVGIVNGIHMLDLCYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS   VD N +MTD    VEVQG+ E   FS+     +L L +    +LI+LQ++ +  
Sbjct: 181 DSKAQVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREALGE 239


>gi|145589263|ref|YP_001155860.1| ribonuclease PH [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047669|gb|ABP34296.1| RNAse PH [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 246

 Score =  340 bits (873), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 122/238 (51%), Positives = 163/238 (68%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR+   +R ++++R  +K+AEGS L+ FGDT +L TA++ +KVP   R +  GW+TA
Sbjct: 11  RPSGRKPKDLRPVTISRAFTKHAEGSVLIAFGDTKVLCTASILDKVPPHKRGSGEGWVTA 70

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+Q GR+QEIQR+IGRA+RSV +L  LG R I +DCDV+QA
Sbjct: 71  EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFNLKTLGERTIHLDCDVLQA 130

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA  D +  +       Q    +   VAAIS G+  G P++DLDY E
Sbjct: 131 DGGTRTASITGAYVAARDAVNQLLKSGALTQ--DPIIDSVAAISVGIYQGAPVLDLDYPE 188

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS+ D D N VMT  G ++EVQG+AE A FS+    A+L+LA+  I +L +LQ D + 
Sbjct: 189 DSSCDTDMNVVMTGKGGMIEVQGTAEGAAFSRAELNALLDLAEQGIQELTQLQIDSLK 246


>gi|85060191|ref|YP_455893.1| ribonuclease PH [Sodalis glossinidius str. 'morsitans']
 gi|123518740|sp|Q2NQT7|RNPH_SODGM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|84780711|dbj|BAE75488.1| ribonuclease PH [Sodalis glossinidius str. 'morsitans']
          Length = 239

 Score =  340 bits (873), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 120/238 (50%), Positives = 161/238 (67%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R +++TR  +++AEGS L+ FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSVQQVRPVTITRHFTRHAEGSVLIAFGDTRVLCTASVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I R+LR+ VDL+ LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNPREAAKGKQGGRTLEIQRLIARSLRAAVDLTKLGEYTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  M+        +  +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALSSMQKKGQL--KTNPMKGFVAAISVGIVAGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VM + G ++EVQG+AE   FSQ     +L LA+  I  L++ QK  +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSQQELNTLLELARGGIDSLVQAQKAAL 236


>gi|325981263|ref|YP_004293665.1| ribonuclease PH [Nitrosomonas sp. AL212]
 gi|325530782|gb|ADZ25503.1| ribonuclease PH [Nitrosomonas sp. AL212]
          Length = 240

 Score =  340 bits (873), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 117/241 (48%), Positives = 166/241 (68%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   Q+R +++ R  +K+A+GS L++ GDT ++ TA++ E+VP ++R    GW+T
Sbjct: 2   IRSHQRTPAQIRPVNIIRHYTKHADGSVLIECGDTKVICTASISEQVPPFLRGQGQGWLT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST  R++REA  G+Q GR+ EIQR+IGRALR+ VDL  LG R I +DCDVIQ
Sbjct: 62  AEYGMLPGSTNTRMQREAAKGKQSGRTMEIQRLIGRALRAAVDLKKLGERTIQLDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VALHD ++ +     +   +  +  HVAAIS G+  G  ++DLDY 
Sbjct: 122 ADGGTRTASITGAFVALHDAIEKL--IYQQLIETSPITDHVAAISVGIHQGVAMLDLDYV 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS+ D D N VMT +  I+EVQG+AE   F++     ML+LA+  I +LI +Q+ V+  
Sbjct: 180 EDSSCDTDMNVVMTGNLGIIEVQGTAEGNAFNRKELDTMLDLAQQGIQELITIQRKVLLA 239

Query: 241 E 241
           +
Sbjct: 240 K 240


>gi|311896220|dbj|BAJ28628.1| putative ribonuclease PH [Kitasatospora setae KM-6054]
          Length = 241

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 111/238 (46%), Positives = 156/238 (65%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R +++ R  SK+AEGS LV +GDT +L TA++ E VP W + +  GW+TA
Sbjct: 3   RIDGRTPDQLRPVTIERNWSKHAEGSVLVSYGDTKVLCTASVTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+V+D  AL    I++DCDV+QA
Sbjct: 63  EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDHRALAENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +    +        Q + G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALVDAVSWAREKKLLRAKGQPITGGVSAVSVGIIDGVPMLDLRYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   + D N V T  G  VEVQG+AE A F +D    +L+L     A+L ++Q+  + 
Sbjct: 183 DVRAETDMNIVCTSDGRFVEVQGTAEGAPFDRDLLNQLLDLGSLGCAELDEIQRKALE 240


>gi|227494822|ref|ZP_03925138.1| ribonuclease PH [Actinomyces coleocanis DSM 15436]
 gi|226831274|gb|EEH63657.1| ribonuclease PH [Actinomyces coleocanis DSM 15436]
          Length = 246

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 115/242 (47%), Positives = 160/242 (66%), Gaps = 3/242 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R + +TR     AEGSCL++FG+T +L  A+L E VP W + +  GW+TA
Sbjct: 5   RADGRANNQLRPVKITRNWIANAEGSCLIEFGNTRVLCVASLTEGVPRWRQGSGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R +RE+V G+ GGR+ EI R+IGR+LR+VVD ++LG   I++DCDV+QA
Sbjct: 65  EYSMLPRATSQRSQRESVKGKIGGRTHEISRLIGRSLRAVVDTASLGENTIVLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS---QVLKGHVAAISCGMLCGYPIVDLD 178
           DGGTRTA+ITGA+VAL D ++  +            +VLK  VAAIS G++ G P +DL 
Sbjct: 125 DGGTRTASITGAYVALADAIKWGQKNGLIPLDKAHQKVLKDSVAAISVGIIDGEPRLDLP 184

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y ED   + D N V+T SG  +EVQG+AE A F++    A+L+LA+    +L   Q+  +
Sbjct: 185 YEEDVRAETDMNVVVTGSGEFIEVQGTAEHAPFTRAELGALLDLAEGGCKELAVFQEVAL 244

Query: 239 SN 240
           S 
Sbjct: 245 SE 246


>gi|317482025|ref|ZP_07941050.1| ribonuclease PH [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688513|ref|YP_004208247.1| ribonuclease PH [Bifidobacterium longum subsp. infantis 157F]
 gi|322690521|ref|YP_004220091.1| ribonuclease PH [Bifidobacterium longum subsp. longum JCM 1217]
 gi|316916592|gb|EFV37989.1| ribonuclease PH [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455377|dbj|BAJ65999.1| putative ribonuclease PH [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320459849|dbj|BAJ70469.1| putative ribonuclease PH [Bifidobacterium longum subsp. infantis
           157F]
          Length = 254

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 107/239 (44%), Positives = 157/239 (65%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R + +TR  +   EGS L++ G+T ++ TAT    VP W +++  GW+T
Sbjct: 14  IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR V+D+ ALG  QI +DCDV+Q
Sbjct: 74  AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA+VAL D +   E   +    S+VLK +V+A+S G++ G P++DL Y 
Sbjct: 134 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 193

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N  MT SG  +E+QG+AE   F++     +L+LA+    +L   Q+  +S
Sbjct: 194 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 252


>gi|90023323|ref|YP_529150.1| ribonuclease PH [Saccharophagus degradans 2-40]
 gi|123395477|sp|Q21EE1|RNPH_SACD2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|89952923|gb|ABD82938.1| RNAse PH [Saccharophagus degradans 2-40]
          Length = 239

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 124/239 (51%), Positives = 175/239 (73%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR   Q+R++++TR+ +++AEGS LV FGDT ++ TA++E  VP +++    GWITA
Sbjct: 3   RPSGRAPEQLRDVTITRQFTRHAEGSVLVCFGDTKVICTASVEAGVPRFLKGQGQGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG+R+ REA  G+QGGR+ EIQR+IGR+LR+ VDL+ALG   I+IDCDVIQA
Sbjct: 63  EYGMLPRSTGSRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLTALGEHSIVIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D +++++    K   +  L   VAA+S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGALVALVDAIRYLQR--EKMITTDPLVHMVAAVSVGIYEGVPVLDLDYPE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMT+ G ++E+QG+AE+  F+ + F  M +LAK  +A+L+ LQK  ++ 
Sbjct: 181 DSNAETDMNMVMTEEGGLIEIQGTAEKKPFTDEQFAGMFSLAKKGVAELVALQKAALAQ 239


>gi|289668014|ref|ZP_06489089.1| ribonuclease PH [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 241

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R + + R  +++AEGS LV FGDT +L TA++E +VP ++R    GW+TA
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPNFLRGKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +    +  +    L G VAA+S G+  G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  +  L  LQ+  ++ 
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMDALFALQRAALAG 241


>gi|289662153|ref|ZP_06483734.1| ribonuclease PH [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 240

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 122/238 (51%), Positives = 162/238 (68%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R + + R  +++AEGS LV FGDT +L TA++E +VP ++R    GW+TA
Sbjct: 5   RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTRVLCTASVENRVPNFLRGKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +    +  +    L G VAA+S G+  G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALADAVNLLLKRGDIKK--HPLIGAVAAVSVGIYRGEPVLDLDYPE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  +  L  LQ+  ++
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMDALFALQRAALA 240


>gi|85714061|ref|ZP_01045050.1| ribonuclease PH [Nitrobacter sp. Nb-311A]
 gi|85699187|gb|EAQ37055.1| ribonuclease PH [Nitrobacter sp. Nb-311A]
          Length = 237

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 143/239 (59%), Positives = 183/239 (76%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R +SL R V KYAEGSC+VKFGDTH+L TATLEE++P W++    GW+T
Sbjct: 1   MRPSRRAPDELRAVSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+QGGR+ EIQR+IGR+LR+ +DL ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATLERTRREASAGKQGGRTVEIQRLIGRSLRAAIDLEALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DC+  M+  +     + VL+G+VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALADCVNWMK--ARDMLKASVLRGNVAAISCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D DANFVMT  G I+EVQG+AE+  FS D F A++ LAK  +A L+ LQK  ++
Sbjct: 179 EDSEADTDANFVMTGEGRIIEVQGTAEKVPFSDDEFLALMALAKKGVARLVDLQKMAVA 237


>gi|310826563|ref|YP_003958920.1| ribonuclease PH [Eubacterium limosum KIST612]
 gi|308738297|gb|ADO35957.1| ribonuclease PH [Eubacterium limosum KIST612]
          Length = 240

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 115/239 (48%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R +S+TR  ++ A+G+ L++ G+T ++ TA +E+KVP ++R  K GW+TA
Sbjct: 3   RIDGRSNECLRPVSITRHFTRNAQGAVLIEVGNTKVICTAMVEDKVPPFLRGEKKGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP STG+R  R+   G+  GR+ EIQR+IGR+LRSV+D+  LG R I IDCDVIQA
Sbjct: 63  EYEMLPSSTGSRKGRDRSRGKIDGRTVEIQRLIGRSLRSVIDMEKLGERTIWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL+D +  + +   +      + G+VAA S G+    PI+DL Y E
Sbjct: 123 DGGTRTASITGAFVALYDAVTWLME--EEIIDEWPINGYVAATSVGINQNEPIMDLCYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DST +VD N VMTD G IVE+QG+ E   F++D F  +L L +D +  LI +QK+ +  
Sbjct: 181 DSTAEVDMNIVMTDEGEIVEIQGTGEERPFTRDEFQKLLALGEDGVYQLINIQKEALGT 239


>gi|323701932|ref|ZP_08113601.1| ribonuclease PH [Desulfotomaculum nigrificans DSM 574]
 gi|323533018|gb|EGB22888.1| ribonuclease PH [Desulfotomaculum nigrificans DSM 574]
          Length = 250

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 117/241 (48%), Positives = 167/241 (69%), Gaps = 2/241 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R + +T   +KYAEGS L++ GDT ++ TAT+E++VP +++    GW+TA
Sbjct: 3   RVDGRTPGQIRPVKITANYNKYAEGSVLIEIGDTRVICTATVEDRVPPFLKGLGKGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY M+PR+TG R  REA  G+  GR+ EIQR+IGRALRSVVDL ALG R + +DCDVIQA
Sbjct: 63  EYSMIPRATGTRTTREAAKGKLSGRTMEIQRLIGRALRSVVDLEALGERMVTMDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRT++ITGA+VA+   L  + +     ++   +   +AA S G++ G P++DL Y E
Sbjct: 123 DGGTRTSSITGAYVAMILALNKLVEQGMLEKI--PVNDFIAATSVGIVNGTPVLDLCYAE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  +VD N V+T +G  VE+QG+ E ATFS+D    +L+LA   I +LIK+Q+ V+  E
Sbjct: 181 DSAAEVDMNVVLTGTGRFVEIQGTGEEATFSRDEMNQLLDLAAAGIKELIKVQQQVLGPE 240

Query: 242 V 242
           +
Sbjct: 241 I 241


>gi|320457392|dbj|BAJ68013.1| putative ribonuclease PH [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 254

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 107/239 (44%), Positives = 157/239 (65%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R + +TR  +   EGS L++ G+T ++ TAT    VP W +++  GW+T
Sbjct: 14  IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR V+D+ ALG  QI +DCDV+Q
Sbjct: 74  AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA+VAL D +   E   +    S+VLK +V+A+S G++ G P++DL Y 
Sbjct: 134 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 193

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N  MT SG  +E+QG+AE   F++     +L+LA+    +L   Q+  +S
Sbjct: 194 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 252


>gi|255102475|ref|ZP_05331452.1| ribonuclease PH [Clostridium difficile QCD-63q42]
          Length = 449

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 113/239 (47%), Positives = 157/239 (65%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R   Q+R + +TR  +KYAEGS L++ G+T ++ TA++EEKVP ++RN+  GWI A
Sbjct: 3   RSYDRSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  R+A  G+  GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQA
Sbjct: 63  EYSMLPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA+ + +  +     K      +   V+AIS G++ G  ++DL Y E
Sbjct: 123 DGGTRTASITGAFVAVAEAIYKLYKA--KTIKEMPITNFVSAISVGIVNGIHMLDLCYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS   VD N +MTD    VEVQG+ E   FS+     +L L +    +LI+LQ++ +  
Sbjct: 181 DSKAQVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREALGE 239


>gi|312143229|ref|YP_003994675.1| ribonuclease PH [Halanaerobium sp. 'sapolanicus']
 gi|311903880|gb|ADQ14321.1| ribonuclease PH [Halanaerobium sp. 'sapolanicus']
          Length = 239

 Score =  340 bits (872), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 109/235 (46%), Positives = 160/235 (68%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+ +Q+R+I +TR  +KYAEGS LV+ GDT +L   ++E+ VP ++R    GW+T
Sbjct: 1   MRNDGRELDQLRDIQITRDFTKYAEGSVLVETGDTMVLCNVSIEDSVPYFLRGQNTGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY +LPR+T +R  REA   +  GR+QEIQR+IGR+LR+++DL  +G R I +DCDV+Q
Sbjct: 61  AEYSLLPRATQDRNIREAAKRKLSGRTQEIQRLIGRSLRAIIDLDKMGERTIWVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D +  +   +        LK  +AA S G++ G  ++DL Y 
Sbjct: 121 ADGGTRTASITGAYVALVDAVNFL--LAEGKLSENPLKDFMAATSVGIVEGKAMLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           ED    VD N  MT++G I+E+QG+AE   F+++    + +LA+  I +LI++QK
Sbjct: 179 EDFRAQVDMNIAMTENGEIIEIQGTAEENPFTREEMNKLYDLAEKGIRELIEIQK 233


>gi|294783495|ref|ZP_06748819.1| ribonuclease PH/Ham1 protein [Fusobacterium sp. 1_1_41FAA]
 gi|294480373|gb|EFG28150.1| ribonuclease PH/Ham1 protein [Fusobacterium sp. 1_1_41FAA]
          Length = 435

 Score =  340 bits (872), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ N+ R+I +T+ V+ YAEGS L++ G+T ++ TA++ EKVP ++R T  GW+T
Sbjct: 2   LREDGRKFNEERKIKITKDVNIYAEGSVLIEVGNTKVICTASVSEKVPPFLRGTGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +REA  G+  GR+ EIQR+IGRALRS +DL  LG R I IDCDVIQ
Sbjct: 62  AEYSMLPRATNERNQREASKGKLTGRTVEIQRLIGRALRSAIDLEKLGERLITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG +VAL   ++ +    ++      L  +VAAIS G +    +VDL Y 
Sbjct: 122 ADGGTRTTSITGGYVALALAIKKL--LKDEILEENPLIANVAAISVGKIDSELMVDLKYS 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  +VD N +M   G  +EVQG+ E +TF++     +L+LA+  I  +I LQ  VI  
Sbjct: 180 EDSVAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNGLLDLAEASIKRIIDLQDKVIEQ 239

Query: 241 E 241
           E
Sbjct: 240 E 240


>gi|254976907|ref|ZP_05273379.1| ribonuclease PH [Clostridium difficile QCD-66c26]
 gi|255316047|ref|ZP_05357630.1| ribonuclease PH [Clostridium difficile QCD-76w55]
 gi|255518704|ref|ZP_05386380.1| ribonuclease PH [Clostridium difficile QCD-97b34]
 gi|255651826|ref|ZP_05398728.1| ribonuclease PH [Clostridium difficile QCD-37x79]
 gi|260684852|ref|YP_003216137.1| ribonuclease Ph [Clostridium difficile CD196]
 gi|260688510|ref|YP_003219644.1| ribonuclease Ph [Clostridium difficile R20291]
 gi|306521613|ref|ZP_07407960.1| ribonuclease Ph [Clostridium difficile QCD-32g58]
 gi|260211015|emb|CBA66330.1| ribonuclease Ph [Clostridium difficile CD196]
 gi|260214527|emb|CBE07044.1| ribonuclease Ph [Clostridium difficile R20291]
          Length = 449

 Score =  340 bits (872), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 113/239 (47%), Positives = 157/239 (65%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R   Q+R + +TR  +KYAEGS L++ G+T ++ TA++EEKVP ++RN+  GWI A
Sbjct: 3   RSYDRSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  R+A  G+  GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQA
Sbjct: 63  EYSMLPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA+ + +  +     K      +   V+AIS G++ G  ++DL Y E
Sbjct: 123 DGGTRTASITGAFVAVAEAIYKLYKA--KTIKEMPITNFVSAISVGIVNGIHMLDLCYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS   VD N +MTD    VEVQG+ E   FS+     +L L +    +LI+LQ++ +  
Sbjct: 181 DSKAQVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREALGE 239


>gi|288817498|ref|YP_003431845.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
 gi|288786897|dbj|BAI68644.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
 gi|308751105|gb|ADO44588.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
          Length = 253

 Score =  340 bits (872), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 113/236 (47%), Positives = 159/236 (67%), Gaps = 2/236 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+ N++R I + R   ++ EGSCL++FG+T ++ T ++++ VP +++    GWIT
Sbjct: 1   MRKDGRKPNELRPIRIVRDYLQHPEGSCLIEFGNTKVICTVSVQDGVPPFLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V GR  GR+ EIQRMIGRA+R+ +DL+ +G R   IDCDVIQ
Sbjct: 61  AEYSMLPRATITRNVRESVQGRISGRTHEIQRMIGRAMRTALDLTKIGERTFWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA+ D +  +   +     S  +K  VA++S G + G  ++DL+Y 
Sbjct: 121 ADGGTRTASITGAFVAIADAVIKL--YNEGILSSTPIKDFVASVSVGTVNGQILLDLNYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           EDST  VD N V T SG I E+Q   E  TFS++ F  ML+LA   I+ LI+LQ+ 
Sbjct: 179 EDSTASVDMNVVATGSGRISEIQALGEENTFSREEFDRMLSLALAGISQLIELQRA 234


>gi|255094294|ref|ZP_05323772.1| ribonuclease PH [Clostridium difficile CIP 107932]
          Length = 378

 Score =  340 bits (872), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 113/239 (47%), Positives = 157/239 (65%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R   Q+R + +TR  +KYAEGS L++ G+T ++ TA++EEKVP ++RN+  GWI A
Sbjct: 3   RSYDRSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  R+A  G+  GR+QEIQR+IGRA+RSVVDL+ LG R I +DCDVIQA
Sbjct: 63  EYSMLPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA+ + +  +     K      +   V+AIS G++ G  ++DL Y E
Sbjct: 123 DGGTRTASITGAFVAVAEAIYKLYKA--KTIKEMPITNFVSAISVGIVNGIHMLDLCYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS   VD N +MTD    VEVQG+ E   FS+     +L L +    +LI+LQ++ +  
Sbjct: 181 DSKAQVDMNIIMTDKCEFVEVQGTGEEKPFSRADLNLLLELGEKGNKELIRLQREALGE 239


>gi|294784524|ref|ZP_06749813.1| ribonuclease PH/Ham1 protein [Fusobacterium sp. 3_1_27]
 gi|294487740|gb|EFG35099.1| ribonuclease PH/Ham1 protein [Fusobacterium sp. 3_1_27]
          Length = 434

 Score =  340 bits (872), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 111/241 (46%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T  GWIT
Sbjct: 2   LREDGRKFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWIT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+IGRALR+ +DL  LG R I IDCDVIQ
Sbjct: 62  AEYSMLPRATNERNPREASKGKLSGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG ++AL   ++ + D   +      L  +VAAIS G +    +VDL Y 
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKLLD--EEILEENPLISNVAAISVGKINSELMVDLKYS 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   +VD N +M   G  +EVQG+ E +TF++     +L+LA++ I   I+LQ  +I+ 
Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRFIELQDKIINQ 239

Query: 241 E 241
           E
Sbjct: 240 E 240


>gi|309388890|gb|ADO76770.1| RNAse PH [Halanaerobium praevalens DSM 2228]
          Length = 239

 Score =  340 bits (872), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 118/241 (48%), Positives = 164/241 (68%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+ NQ+REI +TR  +KYAEGS L++ GDT +L   ++E+ VP ++R    GW+T
Sbjct: 1   MRTDGREYNQLREIEITRNYTKYAEGSVLIETGDTMVLCNVSIEDSVPYFLRGQNKGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY +LPR+T +R  REA   +  GR+QEIQR+IGR+LR+++DL  +G R I +DCDV+Q
Sbjct: 61  AEYSLLPRATQSRNIREAAKRKLSGRTQEIQRLIGRSLRAIIDLEKIGERTIWVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D +  +   +        LKG++AA S G++ G  ++DL Y 
Sbjct: 121 ADGGTRTAAITGAFVALVDGINFL--LAEGKIEENPLKGYMAATSVGLVKGEALLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VMT++G I+E+QG+AE   FS++    M  LA+  I  LI+ QK V+  
Sbjct: 179 EDSQAQVDMNIVMTEAGKIIEIQGTAEENPFSREELDQMYELAEKGILGLIEEQKLVLGG 238

Query: 241 E 241
           E
Sbjct: 239 E 239


>gi|237806963|ref|YP_002891403.1| ribonuclease PH [Tolumonas auensis DSM 9187]
 gi|259494130|sp|C4L818|RNPH_TOLAT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|237499224|gb|ACQ91817.1| ribonuclease PH [Tolumonas auensis DSM 9187]
          Length = 237

 Score =  339 bits (871), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 118/224 (52%), Positives = 157/224 (70%), Gaps = 2/224 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q+R I++TR+ + +AEGS LV+FG T +L TAT+ E VP +++    GW+T
Sbjct: 1   MRPSGRTPEQLRPITITRQYTCHAEGSVLVEFGRTKVLCTATVTEGVPRFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA SG+QGGR+ EIQR+I R+LR+ VDL+ LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRMHREAASGKQGGRTLEIQRLIARSLRAAVDLTKLGENTITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  M   +     +  L   VAA+S G+  G P+ DLDY 
Sbjct: 121 ADGGTRTASITGACVALADALNWM--LAKGSLKTNPLNFMVAAVSVGIYEGAPVCDLDYD 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           EDS+ + D N VMT++G ++E+QG+AE   FSQ+    +L L K
Sbjct: 179 EDSSAETDMNLVMTETGKMIEIQGTAEGEPFSQEELMQLLELGK 222


>gi|23464887|ref|NP_695490.1| ribonuclease PH [Bifidobacterium longum NCC2705]
 gi|227545828|ref|ZP_03975877.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|296453555|ref|YP_003660698.1| ribonuclease PH [Bifidobacterium longum subsp. longum JDM301]
 gi|312133310|ref|YP_004000649.1| rph [Bifidobacterium longum subsp. longum BBMN68]
 gi|23325477|gb|AAN24126.1| probable ribonuclease PH [Bifidobacterium longum NCC2705]
 gi|227213944|gb|EEI81783.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|291517381|emb|CBK70997.1| RNAse PH [Bifidobacterium longum subsp. longum F8]
 gi|296182986|gb|ADG99867.1| ribonuclease PH [Bifidobacterium longum subsp. longum JDM301]
 gi|311772524|gb|ADQ02012.1| Rph [Bifidobacterium longum subsp. longum BBMN68]
          Length = 258

 Score =  339 bits (871), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 107/239 (44%), Positives = 157/239 (65%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R + +TR  +   EGS L++ G+T ++ TAT    VP W +++  GW+T
Sbjct: 18  IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 77

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR V+D+ ALG  QI +DCDV+Q
Sbjct: 78  AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 137

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA+VAL D +   E   +    S+VLK +V+A+S G++ G P++DL Y 
Sbjct: 138 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 197

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N  MT SG  +E+QG+AE   F++     +L+LA+    +L   Q+  +S
Sbjct: 198 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 256


>gi|213965923|ref|ZP_03394114.1| ribonuclease PH [Corynebacterium amycolatum SK46]
 gi|213951501|gb|EEB62892.1| ribonuclease PH [Corynebacterium amycolatum SK46]
          Length = 253

 Score =  339 bits (871), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 110/238 (46%), Positives = 156/238 (65%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  ++MR++++TR  +    GS LV FG+T ++ TA++E+ VP + R++  GW+TA
Sbjct: 10  RADGRAVDEMRKVTITRGFTDNPAGSVLVTFGNTRVMCTASVEQSVPRFKRDSGEGWLTA 69

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R+ RE++ G+  GR+ EI R+IGR+LR+ +DL  LG   I IDCDV+QA
Sbjct: 70  EYSMLPASTHERMPRESMRGKVKGRTHEISRLIGRSLRAAIDLKELGENTINIDCDVLQA 129

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D L ++            LK  VAA+S G++ G   +DL Y E
Sbjct: 130 DGGTRTASITGAYVALADALTYLHAVGAV--PGTPLKAPVAAVSVGIIDGRVCLDLPYEE 187

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N VMT  G  VE+QG+ E  TF +D    ML+ A+  + +LI LQ++V+ 
Sbjct: 188 DSRAEVDLNVVMTAEGKFVEIQGTGEEGTFDRDQLNDMLDSAEKGLRELIALQQEVLR 245


>gi|82701201|ref|YP_410767.1| ribonuclease PH [Nitrosospira multiformis ATCC 25196]
 gi|123545290|sp|Q2YCZ6|RNPH_NITMU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|82409266|gb|ABB73375.1| RNAse PH [Nitrosospira multiformis ATCC 25196]
          Length = 238

 Score =  339 bits (871), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 124/239 (51%), Positives = 174/239 (72%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R+ +Q+R + +TR  +++AEGS L++ GDT ++ TA+++EKVP+++R    GW+T
Sbjct: 1   MRPSKRRPDQLRSVQITRHYTRHAEGSVLIECGDTRIICTASVDEKVPLFLRGKGQGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R++REA  G+Q GR+ EIQR+IGRALRSV+DL+ LG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTNERMQREAAKGKQSGRTMEIQRLIGRALRSVMDLTKLGERTIQVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA+HD +  +     +   +  + GHVAA+S G+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAFVAVHDAIGTL--LRKQAIEATPITGHVAAVSVGVYEGVPMLDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMTD   +VE+QG+AE   FS++    ML+LA+  I +LI  QK+ ++
Sbjct: 179 EDSRCDTDMNIVMTDDLGLVEMQGTAEGMPFSRNDLDMMLDLAQQGIRELIAAQKNALN 237


>gi|213691324|ref|YP_002321910.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213522785|gb|ACJ51532.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 258

 Score =  339 bits (871), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 107/239 (44%), Positives = 157/239 (65%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R + +TR  +   EGS L++ G+T ++ TAT    VP W +++  GW+T
Sbjct: 18  IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 77

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR V+D+ ALG  QI +DCDV+Q
Sbjct: 78  AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 137

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA+VAL D +   E   +    S+VLK +V+A+S G++ G P++DL Y 
Sbjct: 138 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 197

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N  MT SG  +E+QG+AE   F++     +L+LA+    +L   Q+  +S
Sbjct: 198 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 256


>gi|306819763|ref|ZP_07453420.1| ribonuclease PH/Ham1 protein [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304552198|gb|EFM40132.1| ribonuclease PH/Ham1 protein [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 459

 Score =  339 bits (871), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 107/237 (45%), Positives = 159/237 (67%), Gaps = 2/237 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  N+MR I +T+  + YA+GS L++FG+T ++ TA++EEKVP +++N+  GWI+AEY M
Sbjct: 15  RANNEMRRIRITKNYAGYADGSVLIEFGNTKVICTASVEEKVPPFLKNSGTGWISAEYSM 74

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST  R  R++  G+  GRSQEIQR+IGR+LR+ VD + LG R I IDCDVIQADGGT
Sbjct: 75  LPGSTKQRKVRDSTRGKIDGRSQEIQRLIGRSLRNAVDFTKLGERTIWIDCDVIQADGGT 134

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RT +I GA++A+   ++ + D   K      +   ++AIS G++ G  ++DL Y +DS  
Sbjct: 135 RTTSINGAFIAMALAVKKLYD--RKIISHFPIDSFISAISVGIVRGENVLDLCYEQDSNA 192

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            VD N VMT  G  VE+QG+ E+  FS+D    +L LA+     ++ LQK+++ +E+
Sbjct: 193 QVDMNIVMTSKGEFVEIQGTGEQTPFSRDSLNDLLTLAEKANEKIVNLQKEILGDEI 249


>gi|167622362|ref|YP_001672656.1| ribonuclease PH [Shewanella halifaxensis HAW-EB4]
 gi|189043775|sp|B0TQK4|RNPH_SHEHH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|167352384|gb|ABZ74997.1| ribonuclease PH [Shewanella halifaxensis HAW-EB4]
          Length = 237

 Score =  339 bits (870), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 123/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q R +++TR+ + +AEGS LV+FGDT +L TA+ EE VP +++    GW+T
Sbjct: 1   MRPSNRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+Q GR+QEIQR+IGR+LR+ VD+  LG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAARGKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D L            +  LK  +AA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G I+E+QG+AE   FS +   ++L LAK  I +++ +QK  +S
Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLSLLELAKHGIREIVDIQKASLS 237


>gi|312622868|ref|YP_004024481.1| ribonuclease ph [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203335|gb|ADQ46662.1| ribonuclease PH [Caldicellulosiruptor kronotskyensis 2002]
          Length = 258

 Score =  339 bits (870), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  N++R I +TR   KYAEGSCL++ G+T ++ TAT+++KVP + + +  GWIT
Sbjct: 1   MRQDQRAYNEIRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  R+    R  GRS EIQR+IGRALR+ ++  ALG R IIIDCDVIQ
Sbjct: 61  AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG ++A+ D  + + D   K   +  +   VAA+S G+  G  ++DL + 
Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPVTDFVAAVSVGICDGVEMLDLCFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VM D G  +E+QG+AE A FS D F  +L L K  I  +I++Q++V+  
Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWDQFQKLLELGKQGIQKIIEIQREVLGE 238

Query: 241 E 241
           +
Sbjct: 239 D 239


>gi|312134722|ref|YP_004002060.1| ribonuclease ph [Caldicellulosiruptor owensensis OL]
 gi|311774773|gb|ADQ04260.1| ribonuclease PH [Caldicellulosiruptor owensensis OL]
          Length = 258

 Score =  339 bits (870), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 116/241 (48%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  N++R I +TR   KYAEGSCL++ G+T ++ TAT+++KVP + + +  GWIT
Sbjct: 1   MRQDQRGYNELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  R+    R  GRS EIQR+IGRALR+ ++  ALG R IIIDCDVIQ
Sbjct: 61  AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG ++A+ D  + + D   K   +  +   VAA+S G+  G  ++DL + 
Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPITDFVAAVSVGICDGVEMLDLCFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VM D G  +E+QG+AE A FS D F  +L L K  I  +I++QK+V+  
Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWDQFQKLLELGKQGIQKIIEVQKEVLGQ 238

Query: 241 E 241
           +
Sbjct: 239 D 239


>gi|259418160|ref|ZP_05742079.1| ribonuclease PH [Silicibacter sp. TrichCH4B]
 gi|259347066|gb|EEW58880.1| ribonuclease PH [Silicibacter sp. TrichCH4B]
          Length = 237

 Score =  339 bits (870), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 126/237 (53%), Positives = 169/237 (71%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  N+MR +S+    +K+AEGSCL+K GDTH+L TAT+E++VP +I+ +  GW+T
Sbjct: 1   MRPSGRALNEMRSVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA SG+QGGR+ EIQR+IGRALR+ VD  ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +    +       L   V+AISCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDVTM--DPLVDPVSAISCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS   VD NF+MT SG ++EVQ SAE + FS+D    +++LA    ++L ++QK  
Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEVQMSAEGSVFSRDQMNELMDLATKGTSELAEMQKAA 235


>gi|308235684|ref|ZP_07666421.1| ribonuclease PH [Gardnerella vaginalis ATCC 14018]
 gi|311114281|ref|YP_003985502.1| tRNA nucleotidyltransferase [Gardnerella vaginalis ATCC 14019]
 gi|310945775|gb|ADP38479.1| tRNA nucleotidyltransferase [Gardnerella vaginalis ATCC 14019]
          Length = 254

 Score =  339 bits (870), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 110/240 (45%), Positives = 153/240 (63%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +++R + +TR  +   EGS L++ G+T ++ TAT    VP W R+T  GW+T
Sbjct: 14  IRFDGRDVDELRPVKITRNFTNVPEGSVLIECGNTRVMCTATFTIGVPRWRRDTGLGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR V+D+ A+G   I IDCDV+Q
Sbjct: 74  AEYSMLPRATAERTDRESVKGKIGGRTHEISRLIGRCLRGVIDMKAMGECLIQIDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D L   E   +      VLK  V+A+S G++ G P++DL Y 
Sbjct: 134 ADGGTRTASITGAYVALVDALNWAEKHKHIRSAKNVLKDSVSAVSVGVINGTPMLDLPYV 193

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS    D N  MT SG+ +E+QG+AE   F++D    +L+LA     +L   Q+  +S 
Sbjct: 194 EDSQAMTDMNVAMTGSGNFIEIQGTAEHRPFNRDELNVLLDLAAKGNRELQAAQRAALSQ 253


>gi|258544503|ref|ZP_05704737.1| tRNA nucleotidyltransferase [Cardiobacterium hominis ATCC 15826]
 gi|258520238|gb|EEV89097.1| tRNA nucleotidyltransferase [Cardiobacterium hominis ATCC 15826]
          Length = 238

 Score =  339 bits (870), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R+ +Q+R +S+ R V+KYAEGS L++ GDTH+L TA++EEKVP ++R    GW+T
Sbjct: 1   MRASNRRPDQLRPVSIERGVNKYAEGSALIRCGDTHVLCTASVEEKVPPFLRGKNQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  RE+  G+Q GR+ EIQR+IGR+LR+VVDL+ALG R I IDCDV+Q
Sbjct: 61  AEYGMLPRATHERTVRESARGKQQGRTVEIQRLIGRSLRAVVDLTALGERAITIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+G +VAL D ++ +       Q    L G +AA+S G+  G P++DL+Y 
Sbjct: 121 ADGGTRTAAISGGFVALADAIRTLIQQGRLKQ--NPLHGQLAAVSVGVYRGTPLLDLEYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM D G  +E+QG+AE   F  +   AML LA   I +++++QK  + 
Sbjct: 179 EDSEAETDMNIVMNDGGAFIEIQGTAEGHAFRHEEMQAMLALADKGIREIMQVQKQALG 237


>gi|315153645|gb|EFT97661.1| ribonuclease PH [Enterococcus faecalis TX0031]
          Length = 451

 Score =  339 bits (870), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   ++R+I++   V K+ EGS ++ FGDT ++ +AT+EEKVP ++R    GW+ 
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I++DCDVIQ
Sbjct: 62  AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   + H+            +K H+AA+S G+L  GY ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LITGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  VE+QG+ E ATFS D   AML   K  I +LI  QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238


>gi|154686972|ref|YP_001422133.1| ribonuclease PH [Bacillus amyloliquefaciens FZB42]
 gi|166228265|sp|A7Z7C6|RNPH_BACA2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|154352823|gb|ABS74902.1| Rph [Bacillus amyloliquefaciens FZB42]
          Length = 245

 Score =  339 bits (870), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 111/243 (45%), Positives = 158/243 (65%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GRQ +++R I+       + EGS L+  G+T ++  A++E++VP ++R    GWIT
Sbjct: 1   MRHDGRQHDELRPITFDLDFITHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL  LG R I IDCDVIQ
Sbjct: 61  AEYSMLPRATNQRTIRESSKGKVSGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA++A+   +  +         +  +  ++AAIS GM      ++DL+Y
Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLVKSG--VIKTSPVTDYLAAISVGMDKEEGLLLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  +VD N +MT SG  VE+QG+ E ATFS++    +L+LA+  I  LI+ QK+V+ 
Sbjct: 179 EEDSAAEVDMNIIMTGSGRFVELQGTGEEATFSREDLNGLLSLAEKGIQTLIQKQKEVLG 238

Query: 240 NEV 242
             +
Sbjct: 239 ETL 241


>gi|312128053|ref|YP_003992927.1| ribonuclease ph [Caldicellulosiruptor hydrothermalis 108]
 gi|311778072|gb|ADQ07558.1| ribonuclease PH [Caldicellulosiruptor hydrothermalis 108]
          Length = 258

 Score =  339 bits (870), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +++R I +TR   KYAEGSCL++ G+T ++ TAT+++KVP + + +  GWIT
Sbjct: 1   MRQDQRAYDELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  R+    R  GRS EIQR+IGRALR+ ++  ALG R IIIDCDVIQ
Sbjct: 61  AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG ++A+ D  + + D   K   +  +   VAA+S G+  G  ++DL + 
Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPITDFVAAVSVGICDGVEMLDLCFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VM D G  +E+QG+AE A FS D F  +L L K  I  +I++QK+V+  
Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWDQFQKLLELGKRGIQRIIEVQKEVLGE 238

Query: 241 E 241
           +
Sbjct: 239 D 239


>gi|300932726|ref|ZP_07147982.1| ribonuclease PH [Corynebacterium resistens DSM 45100]
          Length = 250

 Score =  339 bits (870), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 112/239 (46%), Positives = 158/239 (66%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  ++MR + +TR  +    GS LV+FG+T ++ TA++E  VP + +++  GW+TA
Sbjct: 11  RADGRAVDEMRPVRITRGFTTNPAGSVLVEFGNTRVMCTASVEIGVPRFKKDSGEGWLTA 70

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R+ RE++ G+  GR+ EI R++GRALR+ VDL+ LG   I IDCDV+QA
Sbjct: 71  EYAMLPSSTHERMPRESMKGKVKGRTHEISRLVGRALRAAVDLTQLGENTIAIDCDVLQA 130

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D L+ +++        + L   VAA+S G++ G   +DL Y E
Sbjct: 131 DGGTRTAAITGAYVALADALKVLKE--QGVVPGEPLLPPVAAVSVGIIDGVACLDLPYEE 188

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  DVD N VMT+ G  VE+QG+ E A F +    AMLNLA+  + +LI  QK+ ++ 
Sbjct: 189 DSRADVDMNVVMTEQGRFVEIQGTGEHAEFDRAELNAMLNLAEGGLRELISAQKEALAQ 247


>gi|289706339|ref|ZP_06502697.1| tRNA nucleotidyltransferase [Micrococcus luteus SK58]
 gi|289556834|gb|EFD50167.1| tRNA nucleotidyltransferase [Micrococcus luteus SK58]
          Length = 254

 Score =  339 bits (870), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 113/238 (47%), Positives = 162/238 (68%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R I++TR  S+ AEGS L++FG+T +L TA+  E VP W++    GW+TA
Sbjct: 10  RPDGRAVDELRPITITRGWSRQAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGTGWVTA 69

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R +RE+V GR GGR+ EI R+IGR+LR+V+DLSALG   I++DCDV+ A
Sbjct: 70  EYAMLPRATNERNQRESVKGRIGGRTHEISRLIGRSLRAVIDLSALGENTIVLDCDVLDA 129

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL + +          + + VLK  VAA+S G++ G P++DL Y E
Sbjct: 130 DGGTRTAAITGAYVALAEAVAWARREGILAKGAAVLKDSVAAVSVGIVDGVPVLDLPYVE 189

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   + D N V+T +G  VEVQG+AE A F++     +L+LA     +L ++Q + ++
Sbjct: 190 DVKAETDMNVVVTGAGEFVEVQGTAEGAPFTRAELDTLLDLALIGTGELARIQAETLA 247


>gi|312899597|ref|ZP_07758923.1| ribonuclease PH [Enterococcus faecalis TX0470]
 gi|311293276|gb|EFQ71832.1| ribonuclease PH [Enterococcus faecalis TX0470]
          Length = 451

 Score =  339 bits (870), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   ++R+I++   V K+ EGS ++ FGDT ++ +AT+EEKVP ++R    GW+ 
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I++DCDVIQ
Sbjct: 62  AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   + H+            +K H+AA+S G+L  GY ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAINHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  VE+QG+ E ATFS D   AML   K  I +LI  QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238


>gi|257085617|ref|ZP_05579978.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Fly1]
 gi|256993647|gb|EEU80949.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Fly1]
          Length = 451

 Score =  339 bits (870), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   ++R+I++   V K+ EGS ++ FGDT ++ +AT+EEKVP ++R    GW+ 
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I++DCDVIQ
Sbjct: 62  AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   + H+            +K H+AA+S G+L  GY ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  VE+QG+ E ATFS D   AML   K  I +LI  QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238


>gi|308174534|ref|YP_003921239.1| ribonuclease PH [Bacillus amyloliquefaciens DSM 7]
 gi|307607398|emb|CBI43769.1| ribonuclease PH [Bacillus amyloliquefaciens DSM 7]
 gi|328554456|gb|AEB24948.1| ribonuclease PH [Bacillus amyloliquefaciens TA208]
 gi|328912859|gb|AEB64455.1| ribonuclease PH [Bacillus amyloliquefaciens LL3]
          Length = 245

 Score =  339 bits (870), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 111/243 (45%), Positives = 158/243 (65%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GRQ +++R I+       + EGS L+  G+T ++  A++E++VP ++R    GWIT
Sbjct: 1   MRHDGRQHDELRPITFDLDFITHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL  LG R I IDCDVIQ
Sbjct: 61  AEYSMLPRATNQRTIRESSKGKVSGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA++A+      +         +  +  ++AAIS GM      ++DL+Y
Sbjct: 121 ADGGTRTASITGAFLAMAIAAGKLVKSG--VIKTSPVTDYLAAISVGMDKEEGLLLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  +VD N +MT SG  VE+QG+ E ATFS++    +L+LA+  I  LI+ QK+V+ 
Sbjct: 179 EEDSAAEVDMNIIMTGSGRFVELQGTGEEATFSREDLNGLLSLAEKGIQTLIQKQKEVLG 238

Query: 240 NEV 242
           + +
Sbjct: 239 DTL 241


>gi|229546199|ref|ZP_04434924.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX1322]
 gi|229550384|ref|ZP_04439109.1| tRNA nucleotidyltransferase [Enterococcus faecalis ATCC 29200]
 gi|255973155|ref|ZP_05423741.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T1]
 gi|255976198|ref|ZP_05426784.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T2]
 gi|256762130|ref|ZP_05502710.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T3]
 gi|256852772|ref|ZP_05558142.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T8]
 gi|256958619|ref|ZP_05562790.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis DS5]
 gi|256965477|ref|ZP_05569648.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis HIP11704]
 gi|257078027|ref|ZP_05572388.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis JH1]
 gi|257082915|ref|ZP_05577276.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis E1Sol]
 gi|257086477|ref|ZP_05580838.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis D6]
 gi|257415736|ref|ZP_05592730.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis AR01/DG]
 gi|257422961|ref|ZP_05599951.1| ribonuclease PH [Enterococcus faecalis X98]
 gi|294780993|ref|ZP_06746345.1| tRNA nucleotidyltransferase [Enterococcus faecalis PC1.1]
 gi|300860046|ref|ZP_07106134.1| tRNA nucleotidyltransferase [Enterococcus faecalis TUSoD Ef11]
 gi|307273813|ref|ZP_07555035.1| ribonuclease PH [Enterococcus faecalis TX0855]
 gi|307274576|ref|ZP_07555756.1| ribonuclease PH [Enterococcus faecalis TX2134]
 gi|307278842|ref|ZP_07559905.1| ribonuclease PH [Enterococcus faecalis TX0860]
 gi|307288573|ref|ZP_07568557.1| ribonuclease PH [Enterococcus faecalis TX0109]
 gi|307291105|ref|ZP_07570990.1| ribonuclease PH [Enterococcus faecalis TX0411]
 gi|312951374|ref|ZP_07770272.1| ribonuclease PH [Enterococcus faecalis TX0102]
 gi|229304506|gb|EEN70502.1| tRNA nucleotidyltransferase [Enterococcus faecalis ATCC 29200]
 gi|229308723|gb|EEN74710.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX1322]
 gi|255964173|gb|EET96649.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T1]
 gi|255969070|gb|EET99692.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T2]
 gi|256683381|gb|EEU23076.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T3]
 gi|256711231|gb|EEU26269.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis T8]
 gi|256949115|gb|EEU65747.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis DS5]
 gi|256955973|gb|EEU72605.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis HIP11704]
 gi|256986057|gb|EEU73359.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis JH1]
 gi|256990945|gb|EEU78247.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis E1Sol]
 gi|256994507|gb|EEU81809.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis D6]
 gi|257157564|gb|EEU87524.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis ARO1/DG]
 gi|257164785|gb|EEU94745.1| ribonuclease PH [Enterococcus faecalis X98]
 gi|294451939|gb|EFG20389.1| tRNA nucleotidyltransferase [Enterococcus faecalis PC1.1]
 gi|300850864|gb|EFK78613.1| tRNA nucleotidyltransferase [Enterococcus faecalis TUSoD Ef11]
 gi|306497759|gb|EFM67291.1| ribonuclease PH [Enterococcus faecalis TX0411]
 gi|306500480|gb|EFM69813.1| ribonuclease PH [Enterococcus faecalis TX0109]
 gi|306504513|gb|EFM73720.1| ribonuclease PH [Enterococcus faecalis TX0860]
 gi|306508728|gb|EFM77818.1| ribonuclease PH [Enterococcus faecalis TX2134]
 gi|306509498|gb|EFM78546.1| ribonuclease PH [Enterococcus faecalis TX0855]
 gi|310630634|gb|EFQ13917.1| ribonuclease PH [Enterococcus faecalis TX0102]
 gi|315028079|gb|EFT40011.1| ribonuclease PH [Enterococcus faecalis TX2137]
 gi|315030712|gb|EFT42644.1| ribonuclease PH [Enterococcus faecalis TX4000]
 gi|315031600|gb|EFT43532.1| ribonuclease PH [Enterococcus faecalis TX0017]
 gi|315034958|gb|EFT46890.1| ribonuclease PH [Enterococcus faecalis TX0027]
 gi|315148459|gb|EFT92475.1| ribonuclease PH [Enterococcus faecalis TX4244]
 gi|315156537|gb|EFU00554.1| ribonuclease PH [Enterococcus faecalis TX0043]
 gi|315158363|gb|EFU02380.1| ribonuclease PH [Enterococcus faecalis TX0312]
 gi|315165533|gb|EFU09550.1| ribonuclease PH [Enterococcus faecalis TX1302]
 gi|315168390|gb|EFU12407.1| ribonuclease PH [Enterococcus faecalis TX1341]
 gi|323480361|gb|ADX79800.1| ribonuclease PH [Enterococcus faecalis 62]
 gi|329576387|gb|EGG57900.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX1467]
          Length = 451

 Score =  339 bits (870), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   ++R+I++   V K+ EGS ++ FGDT ++ +AT+EEKVP ++R    GW+ 
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I++DCDVIQ
Sbjct: 62  AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   + H+            +K H+AA+S G+L  GY ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  VE+QG+ E ATFS D   AML   K  I +LI  QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238


>gi|23335847|ref|ZP_00121079.1| COG0689: RNase PH [Bifidobacterium longum DJO10A]
 gi|189439894|ref|YP_001954975.1| ribonuclease PH [Bifidobacterium longum DJO10A]
 gi|189428329|gb|ACD98477.1| RNase PH [Bifidobacterium longum DJO10A]
          Length = 258

 Score =  338 bits (869), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 107/239 (44%), Positives = 157/239 (65%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R + +TR  +   EGS L++ G+T ++ TAT    VP W +++  GW+T
Sbjct: 18  IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 77

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR V+D+ ALG  QI +DCDV+Q
Sbjct: 78  AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 137

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA+VAL D +   E   +    S+VLK +V+A+S G++ G P++DL Y 
Sbjct: 138 ADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYI 197

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N  MT SG  +E+QG+AE   F++     +L+LA+    +L   Q+  +S
Sbjct: 198 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQAAQRAALS 256


>gi|296331615|ref|ZP_06874084.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675426|ref|YP_003867098.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151210|gb|EFG92090.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413670|gb|ADM38789.1| ribonuclease PH [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 245

 Score =  338 bits (869), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 108/243 (44%), Positives = 157/243 (64%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GRQ +++R I+       + EGS L+  G+T ++  A++E++VP ++R    GWIT
Sbjct: 1   MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL  LG R I IDCDVIQ
Sbjct: 61  AEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA++A+   +  +         +  +   +AAIS G+      ++DL+Y
Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLIKAGTI--KTNPITDFLAAISVGIDKEQGILLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS+ +VD N +MT SG  VE+QG+ E ATFS++    +L LA+  I +L+  QK+ + 
Sbjct: 179 EEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELVDKQKEELG 238

Query: 240 NEV 242
           + +
Sbjct: 239 DSL 241


>gi|29375698|ref|NP_814852.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis V583]
 gi|256962282|ref|ZP_05566453.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Merz96]
 gi|257418951|ref|ZP_05595945.1| ribonuclease PH/Ham1 [Enterococcus faecalis T11]
 gi|293383311|ref|ZP_06629226.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis R712]
 gi|293387532|ref|ZP_06632081.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis S613]
 gi|312905818|ref|ZP_07764838.1| ribonuclease PH [Enterococcus faecalis DAPTO 512]
 gi|312909127|ref|ZP_07767986.1| ribonuclease PH [Enterococcus faecalis DAPTO 516]
 gi|29343159|gb|AAO80922.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis V583]
 gi|256952778|gb|EEU69410.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis Merz96]
 gi|257160779|gb|EEU90739.1| ribonuclease PH/Ham1 [Enterococcus faecalis T11]
 gi|291079334|gb|EFE16698.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis R712]
 gi|291083042|gb|EFE20005.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis S613]
 gi|310628157|gb|EFQ11440.1| ribonuclease PH [Enterococcus faecalis DAPTO 512]
 gi|311290551|gb|EFQ69107.1| ribonuclease PH [Enterococcus faecalis DAPTO 516]
 gi|315174641|gb|EFU18658.1| ribonuclease PH [Enterococcus faecalis TX1346]
 gi|315573714|gb|EFU85905.1| ribonuclease PH [Enterococcus faecalis TX0309B]
 gi|315582671|gb|EFU94862.1| ribonuclease PH [Enterococcus faecalis TX0309A]
 gi|327534753|gb|AEA93587.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis OG1RF]
          Length = 451

 Score =  338 bits (869), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   ++R+I++   V K+ EGS ++ FGDT ++ +AT+EEKVP ++R    GW+ 
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I++DCDVIQ
Sbjct: 62  AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   + H+            +K H+AA+S G+L  GY ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  VE+QG+ E ATFS D   AML   K  I +LI  QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238


>gi|307268764|ref|ZP_07550132.1| ribonuclease PH [Enterococcus faecalis TX4248]
 gi|306514892|gb|EFM83439.1| ribonuclease PH [Enterococcus faecalis TX4248]
          Length = 451

 Score =  338 bits (869), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   ++R+I++   V K+ EGS ++ FGDT ++ +AT+EEKVP ++R    GW+ 
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I++DCDVIQ
Sbjct: 62  AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   + H+            +K H+AA+S G+L  GY ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  VE+QG+ E ATFS D   AML   K  I +LI  QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238


>gi|291460911|ref|ZP_06025826.2| ribonuclease PH/Ham1 protein [Fusobacterium periodonticum ATCC
           33693]
 gi|291380070|gb|EFE87588.1| ribonuclease PH/Ham1 protein [Fusobacterium periodonticum ATCC
           33693]
          Length = 436

 Score =  338 bits (869), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 114/241 (47%), Positives = 158/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ N+ R+I +T+ V+ YAEGS L++ G+T ++ TA++ EKVP ++R T  GW+T
Sbjct: 3   LREDGRKFNEERKIKITKDVNIYAEGSVLIEVGNTKVICTASVSEKVPPFLRGTGKGWVT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +REA  G+  GR+ EIQR+IGRALRS +DL  LG R I IDCDVIQ
Sbjct: 63  AEYSMLPRATNERNQREASKGKLTGRTVEIQRLIGRALRSAIDLEKLGERLITIDCDVIQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG ++AL   ++ +     +      L  +VAAIS G +    +VDL Y 
Sbjct: 123 ADGGTRTTSITGGYIALALAIKKL--LKEEILEENPLIANVAAISVGKINSELMVDLKYS 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  +VD N +M   G  +EVQG+ E +TF++     +L+LA+  I  +I LQ  VI  
Sbjct: 181 EDSAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNGLLDLAEASIKRIIDLQDKVIEQ 240

Query: 241 E 241
           E
Sbjct: 241 E 241


>gi|99082712|ref|YP_614866.1| RNAse PH [Ruegeria sp. TM1040]
 gi|122397509|sp|Q1GCL2|RNPH_SILST RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|99038992|gb|ABF65604.1| RNAse PH [Ruegeria sp. TM1040]
          Length = 237

 Score =  338 bits (869), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 126/237 (53%), Positives = 169/237 (71%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  N+MR +S+    +K+AEGSCL+K GDTH+L TAT+E++VP +I+ +  GW+T
Sbjct: 1   MRPSGRALNEMRSVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA SG+QGGR+ EIQR+IGRALR+ VD  ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +    +       L   V+AISCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDVTM--DPLVDPVSAISCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS   VD NF+MT SG ++EVQ SAE + FS+D    +++LA    ++L ++QK  
Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEVQMSAEGSVFSRDQMNELMDLAAKGTSELAEMQKAA 235


>gi|312903655|ref|ZP_07762831.1| ribonuclease PH [Enterococcus faecalis TX0635]
 gi|310633008|gb|EFQ16291.1| ribonuclease PH [Enterococcus faecalis TX0635]
          Length = 451

 Score =  338 bits (869), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   ++R+I++   V K+ EGS ++ FGDT ++ +AT+EEKVP ++R    GWI 
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWIA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I++DCDVIQ
Sbjct: 62  AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   + H+            +K H+AA+S G+L  GY ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  VE+QG+ E ATFS D   AML   K  I +LI  QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238


>gi|222528843|ref|YP_002572725.1| ribonuclease PH [Caldicellulosiruptor bescii DSM 6725]
 gi|254808576|sp|B9MQJ8|RNPH_ANATD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|222455690|gb|ACM59952.1| ribonuclease PH [Caldicellulosiruptor bescii DSM 6725]
          Length = 258

 Score =  338 bits (869), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  N++R I +TR   KYAEGSCL++ G+T ++ TAT+++KVP + + +  GWIT
Sbjct: 1   MRQDQRAYNEIRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  R+    R  GRS EIQR+IGRALR+ ++  ALG R IIIDCDVIQ
Sbjct: 61  AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG ++A+ D  + + D   K   +  +   VAA+S G+  G  ++DL + 
Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPVTDFVAAVSVGICDGVEMLDLCFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VM D G  +E+QG+AE A FS + F  +L L K  I  +I++QK+V+  
Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQKLLELGKQGIQKIIEVQKEVLGQ 238

Query: 241 E 241
           +
Sbjct: 239 D 239


>gi|317129838|ref|YP_004096120.1| ribonuclease PH [Bacillus cellulosilyticus DSM 2522]
 gi|315474786|gb|ADU31389.1| ribonuclease PH [Bacillus cellulosilyticus DSM 2522]
          Length = 255

 Score =  338 bits (869), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 113/240 (47%), Positives = 159/240 (66%), Gaps = 3/240 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+ + +R++ +     K+ EGS L+ FG+T ++  A++E++VP ++R    GWIT
Sbjct: 1   MRHDGRKTDDIRKVDIIPHYIKHPEGSVLISFGETKVICAASIEDRVPPFMRGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALRSVVDL A+G R I IDCDVIQ
Sbjct: 61  AEYSMLPRATEQRNIRESAKGKLSGRTMEIQRLIGRALRSVVDLDAIGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA++TGA+VA+   L  +++     +    +K  +AAIS G+  G   I+DLDY
Sbjct: 121 ADGGTRTASVTGAFVAMALALHKLKEAKQIKKF--PIKHFLAAISVGVNEGNIAILDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  +VD N +MT +   VE+QG+ E ATFS+     ML+LA+  I +L   QK+ + 
Sbjct: 179 IEDSKANVDMNIIMTGNSEFVEIQGTGEEATFSRKQLNEMLDLAELGINELFLHQKEALG 238


>gi|256618706|ref|ZP_05475552.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis ATCC 4200]
 gi|257089534|ref|ZP_05583895.1| ribonuclease PH [Enterococcus faecalis CH188]
 gi|256598233|gb|EEU17409.1| ribonuclease PH/Ham1 protein [Enterococcus faecalis ATCC 4200]
 gi|256998346|gb|EEU84866.1| ribonuclease PH [Enterococcus faecalis CH188]
 gi|315577483|gb|EFU89674.1| ribonuclease PH [Enterococcus faecalis TX0630]
          Length = 451

 Score =  338 bits (869), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   ++R+I++   V K+ EGS ++ FGDT ++ +AT+EEKVP ++R    GW+ 
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGAGTGWVA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I++DCDVIQ
Sbjct: 62  AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   + H+            +K H+AA+S G+L  GY ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  VE+QG+ E ATFS D   AML   K  I +LI  QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238


>gi|239917361|ref|YP_002956919.1| RNAse PH [Micrococcus luteus NCTC 2665]
 gi|281414156|ref|ZP_06245898.1| RNAse PH [Micrococcus luteus NCTC 2665]
 gi|239838568|gb|ACS30365.1| RNAse PH [Micrococcus luteus NCTC 2665]
          Length = 254

 Score =  338 bits (869), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 113/238 (47%), Positives = 162/238 (68%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R I++TR  S+ AEGS L++FG+T +L TA+  E VP W++    GW+TA
Sbjct: 10  RPDGRAVDELRPITITRGWSRQAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGTGWVTA 69

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R +RE+V GR GGR+ EI R+IGR+LR+V+DLSALG   I++DCDV+ A
Sbjct: 70  EYAMLPRATNERSQRESVKGRIGGRTHEISRLIGRSLRAVIDLSALGENTIVLDCDVLDA 129

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL + +          + + VLK  VAA+S G++ G P++DL Y E
Sbjct: 130 DGGTRTAAITGAYVALAEAVAWARREGILAKGAAVLKDSVAAVSVGIVDGVPVLDLPYVE 189

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   + D N V+T +G  VEVQG+AE A F++     +L+LA     +L ++Q + ++
Sbjct: 190 DVKAETDMNVVVTGAGEFVEVQGTAEGAPFTRAELDTLLDLALIGTGELARIQAETLA 247


>gi|145296503|ref|YP_001139324.1| ribonuclease PH [Corynebacterium glutamicum R]
 gi|166228277|sp|A4QGQ6|RNPH_CORGB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|140846423|dbj|BAF55422.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 245

 Score =  338 bits (868), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 108/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++QMR + +TR  +    GS LV+FG+T ++ TA++E  VP + R++  GW+TA
Sbjct: 9   RFDGRAQDQMRAVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE+++G+  GR+ EI R+IGR+LR+ VDLS LG   I IDCDV+QA
Sbjct: 69  EYAMLPAATAERNRRESMAGKVKGRTHEISRLIGRSLRAAVDLSQLGENTIAIDCDVLQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D ++ +++          L   VAA+S G++ G   +DL Y E
Sbjct: 129 DGGTRTASITGAYVALADAIKVLQE--RGVVPGSPLLAPVAAVSVGLVDGNVCLDLPYEE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  DVD N VMT+ G  VE+QG+ E  TF++     ML+ A+    +L+  QK  + 
Sbjct: 187 DSRADVDLNVVMTEHGEFVEIQGTGEETTFTRAQLNDMLDYAEKGCRELVAAQKAALG 244


>gi|315150398|gb|EFT94414.1| ribonuclease PH [Enterococcus faecalis TX0012]
          Length = 451

 Score =  338 bits (868), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 118/239 (49%), Positives = 159/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   ++R+I++   V K+ EGS ++ FGDT ++ +AT+EEKVP ++R    GW+ 
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I++DCDVIQ
Sbjct: 62  AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   + H+            +K H+AA+S G+L  GY ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  VE+QG+ E ATFS D    ML   K  I +LI  QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNTMLFYGKTGIEELIAYQKEAL 238


>gi|39996894|ref|NP_952845.1| ribonuclease PH [Geobacter sulfurreducens PCA]
 gi|61215993|sp|Q74C79|RNPH_GEOSL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|39983782|gb|AAR35172.1| ribonuclease PH [Geobacter sulfurreducens PCA]
 gi|307634928|gb|ADI84630.2| ribonuclease PH [Geobacter sulfurreducens KN400]
          Length = 238

 Score =  338 bits (868), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR    +R I +TR+  K+AEGS LV+FGDT +L TA++EE VP ++R    GW+T
Sbjct: 1   MRSDGRNPASLRNIRITRKYLKHAEGSVLVEFGDTKVLCTASVEESVPPFLRGKGGGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+ GGR+ EIQR+IGR+LR+V DL+ LG R ++IDCDV+Q
Sbjct: 61  AEYSMLPRATHTRSPREAAKGKLGGRTHEIQRLIGRSLRAVTDLTLLGERSVLIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D  Q +   S     +  ++  VAA+S G++ G  ++DL+Y 
Sbjct: 121 ADGGTRTASITGAYVALVDAFQWL--VSQGTIATLPVREAVAAVSVGIVGGEVLLDLNYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  DVD NFVMT SG  VEVQG+AE   F+      M +LA   I  L+ +Q++V+  
Sbjct: 179 EDSRADVDMNFVMTSSGRFVEVQGTAEAEPFTCAQMDDMRSLAMIGIERLMAIQQEVLEQ 238


>gi|125972712|ref|YP_001036622.1| ribonuclease PH [Clostridium thermocellum ATCC 27405]
 gi|125712937|gb|ABN51429.1| RNAse PH [Clostridium thermocellum ATCC 27405]
          Length = 263

 Score =  338 bits (868), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 112/240 (46%), Positives = 162/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR ++ +R + +TR   K+AEGS L++ GDT ++ TAT+++KVP + +NT  GW+T
Sbjct: 2   LRIDGRGQSDLRPVKITRNYIKHAEGSVLIEMGDTKVICTATVDDKVPPFKKNTGEGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  R+    +  GRSQEIQR+IGRALRSVV+L+ LG R+IIIDCDVIQ
Sbjct: 62  AEYSMLPRATAARNPRDISKLKLSGRSQEIQRLIGRALRSVVNLNLLGEREIIIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +VAL D  + + D  +       +   +AA+S G++ G  ++DL Y 
Sbjct: 122 ADGGTRTASITGGFVALVDACKKLVD--DGIIEKIPVTDFLAAVSVGIVDGEEMLDLCYM 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS    D N VMT  G  +E+Q + E+  F ++ F  +L+ A+  I+ LI++QKD +  
Sbjct: 180 EDSNAATDMNVVMTSKGEFIEIQATGEQLPFKKEQFDKLLSFAEKGISQLIEIQKDALGQ 239


>gi|260431972|ref|ZP_05785943.1| ribonuclease PH [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415800|gb|EEX09059.1| ribonuclease PH [Silicibacter lacuscaerulensis ITI-1157]
          Length = 237

 Score =  338 bits (868), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 124/239 (51%), Positives = 170/239 (71%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  ++MR +S+    +K+AEGSCL+K GDTH+L TAT+E++VP +I+ +  GW+T
Sbjct: 1   MRPSGRDLSEMRPVSIETGFTKHAEGSCLIKIGDTHVLCTATIEDRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA SG+QGGR+ EIQR+IGRALR+ VD  ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +    +    +  L   VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDVI--TDPLVDPVAAVSCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD NF+MT SG ++EVQ SAE + FS+     ++ LA+  +++L+  QK   +
Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEVQMSAEGSVFSRAQMDQLMELAEKGVSELVAAQKAATA 237


>gi|255528421|ref|ZP_05395219.1| ribonuclease PH [Clostridium carboxidivorans P7]
 gi|296184854|ref|ZP_06853265.1| ribonuclease PH [Clostridium carboxidivorans P7]
 gi|255507888|gb|EET84330.1| ribonuclease PH [Clostridium carboxidivorans P7]
 gi|296050636|gb|EFG90059.1| ribonuclease PH [Clostridium carboxidivorans P7]
          Length = 249

 Score =  338 bits (868), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 110/239 (46%), Positives = 161/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ +Q+R   +TR  +KYAEGS L++ GDT ++ TA++E+KVP +++    GWIT
Sbjct: 1   MRIDGRKNDQIRHTKITRNYTKYAEGSVLIEAGDTKVICTASIEDKVPPFLKGKGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            EY M+PRST  R  R+   G+  GR+ EIQR+IGRALRSVVDL ++G + I IDCDVIQ
Sbjct: 61  CEYNMIPRSTKVRKVRDINRGKIDGRTMEIQRIIGRALRSVVDLKSIGEKTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA++AL D +  +   +        ++  V AIS G++    ++DL Y 
Sbjct: 121 ADGGTRTASISGAFIALVDAVNKLHKQTPFNVY--PVRDFVGAISVGIVGNVKMLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  +VD N VMTDSG  +E+QG+ E   FS+     +L+LA+  I  +I+++K+ + 
Sbjct: 179 EDSKANVDMNVVMTDSGEFIEIQGTGEEKPFSKQDLSELLSLAEQGINHVIQIEKESLK 237


>gi|297618203|ref|YP_003703362.1| ribonuclease PH [Syntrophothermus lipocalidus DSM 12680]
 gi|297146040|gb|ADI02797.1| ribonuclease PH [Syntrophothermus lipocalidus DSM 12680]
          Length = 241

 Score =  338 bits (868), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 123/240 (51%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  ++ R I++    +K+A GS L++ GDT ++ TA++E+KVP +++ T  GW+TA
Sbjct: 3   RTSGRAFDEPRPINIITGYTKFAPGSVLIETGDTRVICTASVEDKVPPFLKGTGTGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R  RE   GR  GR+ EIQR+IGRALR+VVD+SALG R + IDCDVIQA
Sbjct: 63  EYSMLPGSTPTRTAREVTRGRVSGRTSEIQRLIGRALRAVVDMSALGERTVWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL+  +Q +++          +  +VAA S G++ G P++DL+YGE
Sbjct: 123 DGGTRTASITGAFVALYLAMQKLKESG--IIERLPVTDYVAATSVGIVRGIPLLDLEYGE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  +VD N VMT+SG  VE+QG+AE   FSQD    +L LAK  I+ LI  QK V+  E
Sbjct: 181 DSEAEVDMNVVMTESGKFVEIQGTAENNPFSQDELDELLRLAKKGISILIAKQKAVLGAE 240


>gi|217420445|ref|ZP_03451950.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 576]
 gi|238561030|ref|ZP_00442682.2| tRNA nucleotidyltransferase [Burkholderia mallei GB8 horse 4]
 gi|251766543|ref|ZP_02264154.2| tRNA nucleotidyltransferase [Burkholderia mallei PRL-20]
 gi|254196137|ref|ZP_04902562.1| ribonuclease PH [Burkholderia pseudomallei S13]
 gi|254207704|ref|ZP_04914054.1| ribonuclease PH [Burkholderia mallei JHU]
 gi|121229702|gb|ABM52220.1| ribonuclease PH [Burkholderia mallei SAVP1]
 gi|147751598|gb|EDK58665.1| ribonuclease PH [Burkholderia mallei JHU]
 gi|169652881|gb|EDS85574.1| ribonuclease PH [Burkholderia pseudomallei S13]
 gi|217395857|gb|EEC35874.1| tRNA nucleotidyltransferase [Burkholderia pseudomallei 576]
 gi|238525408|gb|EEP88836.1| tRNA nucleotidyltransferase [Burkholderia mallei GB8 horse 4]
 gi|243065369|gb|EES47555.1| tRNA nucleotidyltransferase [Burkholderia mallei PRL-20]
          Length = 295

 Score =  338 bits (868), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 124/239 (51%), Positives = 171/239 (71%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R SGR+ +Q+R++ +TR  +K+AEG+ LV+FGDT ++ TA++ E+VP ++R    GW+T
Sbjct: 58  LRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLT 117

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQ
Sbjct: 118 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQ 177

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA HD +  +            +  +VAAIS G+  G P++DLDY 
Sbjct: 178 ADGGTRTASITGAFVAAHDAVTKLVAAGRI--ARSPITDYVAAISVGVFGGTPVLDLDYD 235

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT +G  VEVQG+AE A FS+    A+L+LA+  I +L++LQ+  + 
Sbjct: 236 EDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAALE 294


>gi|114330335|ref|YP_746557.1| ribonuclease PH [Nitrosomonas eutropha C91]
 gi|122314626|sp|Q0AJ79|RNPH_NITEC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|114307349|gb|ABI58592.1| RNAse PH [Nitrosomonas eutropha C91]
          Length = 242

 Score =  338 bits (868), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 123/239 (51%), Positives = 169/239 (70%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R + R   QMR I +TR   ++AEGS L+++G+T ++ TA++ EKVP +++    GW+TA
Sbjct: 3   RYNHRTLAQMRPIRITRHYIRHAEGSVLIEYGETKVICTASVIEKVPPFLKGAGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R++REA  G+Q GR+ EIQR+IGRALRSV+DL  LG R I IDCDVIQA
Sbjct: 63  EYGMLPRSTGERMQREAAKGKQSGRTMEIQRLIGRALRSVLDLKKLGERTIQIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D + ++   + K      +K HVAA+S G+L G P++DLDY E
Sbjct: 123 DGGTRTASITGAFVALCDAVGYLR--AEKIISENPIKDHVAAVSVGILKGQPLLDLDYAE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS+ D D N VMT +  +VEVQG+AE+  FS+     ML++A+  + +L  LQ+  +  
Sbjct: 181 DSSCDTDLNVVMTGNLGLVEVQGTAEKVVFSRQELDVMLDMAQQGLQELFDLQRKTLET 239


>gi|163745104|ref|ZP_02152464.1| ribonuclease PH [Oceanibulbus indolifex HEL-45]
 gi|161381922|gb|EDQ06331.1| ribonuclease PH [Oceanibulbus indolifex HEL-45]
          Length = 237

 Score =  338 bits (868), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 123/239 (51%), Positives = 173/239 (72%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ ++MR +S+    +K+AEGS L+K GDTH+L TAT+E++VP +I+ +  GW+T
Sbjct: 1   MRPSGRKLDEMRAVSIETGFTKHAEGSALIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA  G+QGGR+ EIQR+IGRALR+ VD SALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATNTRMRREAALGKQGGRTVEIQRLIGRALRAGVDRSALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG W+AL   +  +    +    S  L   VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWIALRLAVNKLMKAGDVV--SDPLVDPVAAVSCGIYAGQPLLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD NF+MT SG ++E+Q SAE +T+++D    +++LA+  + +L  +QK V +
Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEIQMSAEGSTYTRDQMNQLMDLAEKGVGELAAIQKSVTA 237


>gi|188579737|ref|YP_001923182.1| ribonuclease PH [Methylobacterium populi BJ001]
 gi|226736916|sp|B1ZJ73|RNPH_METPB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|179343235|gb|ACB78647.1| ribonuclease PH [Methylobacterium populi BJ001]
          Length = 237

 Score =  338 bits (868), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 137/239 (57%), Positives = 175/239 (73%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  + MR+++L R V++YAEGSCLV FG+T +L TA+LEE+ P W+R +  GW+T
Sbjct: 1   MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASLEERGPPWLRGSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE  SG+  GR+QEIQR+IGR+LR+V +L ALG RQI +DCDVIQ
Sbjct: 61  AEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVALHDC   M   +        LK HVAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALHDCFAWMR--ARSIISVDPLKDHVAAVSCGIYKGQPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFV+T  G IVEVQG+AE   FS+  F  +L LAK  IA+L++LQ+  I+
Sbjct: 179 EDSAAETDANFVVTGKGGIVEVQGTAEMEPFSEAQFIELLALAKGGIANLVELQRKAIA 237


>gi|312794043|ref|YP_004026966.1| ribonuclease ph [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181183|gb|ADQ41353.1| ribonuclease PH [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 258

 Score =  338 bits (867), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 115/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  N++R I +TR   KYAEGSCL++ G+T ++ TAT+++KVP + + +  GWIT
Sbjct: 1   MRQDQRAYNELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  R+    R  GRS EIQR+IGRALR+ ++  ALG R IIIDCDVIQ
Sbjct: 61  AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG ++A+ D  + + D   K   +  +   VAA+S G+  G  ++DL + 
Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPITDFVAAVSVGICDGVEMLDLCFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VM D G  +E+QG+AE A FS + F  +L L K  I  +I++QK+V+  
Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQRLLELGKQGIQKIIEVQKEVLGE 238

Query: 241 E 241
           +
Sbjct: 239 D 239


>gi|218551172|ref|YP_002384963.1| ribonuclease PH [Escherichia fergusonii ATCC 35469]
 gi|218560715|ref|YP_002393628.1| ribonuclease PH [Escherichia coli S88]
 gi|218691927|ref|YP_002400139.1| ribonuclease PH [Escherichia coli ED1a]
 gi|218702410|ref|YP_002410039.1| ribonuclease PH [Escherichia coli IAI39]
 gi|218707277|ref|YP_002414796.1| ribonuclease PH [Escherichia coli UMN026]
 gi|26110719|gb|AAN82903.1|AE016769_18 Ribonuclease PH [Escherichia coli CFT073]
 gi|91074734|gb|ABE09615.1| ribonuclease PH [Escherichia coli UTI89]
 gi|218358713|emb|CAQ91369.1| ribonuclease PH [Escherichia fergusonii ATCC 35469]
 gi|218367484|emb|CAR05266.1| ribonuclease PH [Escherichia coli S88]
 gi|218372396|emb|CAR20270.1| ribonuclease PH [Escherichia coli IAI39]
 gi|218429491|emb|CAR10314.1| ribonuclease PH [Escherichia coli ED1a]
 gi|218434374|emb|CAR15299.1| ribonuclease PH [Escherichia coli UMN026]
          Length = 246

 Score =  338 bits (867), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 126/240 (52%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 9   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 69  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D LQ + +  N    +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 129 ADGGTRTASITGACVALADALQKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 186

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 187 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 246


>gi|149189226|ref|ZP_01867513.1| ribonuclease PH [Vibrio shilonii AK1]
 gi|148836980|gb|EDL53930.1| ribonuclease PH [Vibrio shilonii AK1]
          Length = 238

 Score =  338 bits (867), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 119/240 (49%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA SG+QGGR+ EIQR+I R+LR+VVDL A+G   + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMRREASSGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VA+ D   H+   +     +  +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASISGASVAMADAFAHL--VAKGKLKANPMKGHVAAVSVGILGEDILCDLEYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   F+     A+L  A   IA+++  QK  + +
Sbjct: 179 EDSAADTDMNVVMTEDGRMIEIQGTAEGEPFTHKELMALLESANKGIAEIVAAQKLALED 238


>gi|300780583|ref|ZP_07090438.1| tRNA nucleotidyltransferase [Corynebacterium genitalium ATCC 33030]
 gi|300533569|gb|EFK54629.1| tRNA nucleotidyltransferase [Corynebacterium genitalium ATCC 33030]
          Length = 245

 Score =  338 bits (867), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 107/239 (44%), Positives = 157/239 (65%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  ++MR + +TR  +    GS LV+FG+T ++ TA+ EE VP + +++  GW+T
Sbjct: 8   LRADGRALDEMRPVRITRGFTSNPAGSVLVEFGNTRVMCTASAEEGVPRFKKDSGEGWLT 67

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP +T +R+ RE++ G+  GR+ EI R++GR+LR+ VDL+ALG   I +DCDV+Q
Sbjct: 68  AEYAMLPAATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLTALGENTIQLDCDVLQ 127

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D + ++++        + L   VAA+S G++ G   +DL Y 
Sbjct: 128 ADGGTRTASITGAYVALADAIGYLKE--QGVVPGEPLLAPVAAVSVGIVDGRVCLDLPYE 185

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  +VD N VMTDSG  VEVQG+ E   F ++    ML+ A+    +LI  QK  + 
Sbjct: 186 EDSRAEVDLNVVMTDSGDFVEVQGTGEHGLFGREQLGLMLDAAEKGCRELIDAQKAALG 244


>gi|260494952|ref|ZP_05815081.1| ribonuclease PH [Fusobacterium sp. 3_1_33]
 gi|260197395|gb|EEW94913.1| ribonuclease PH [Fusobacterium sp. 3_1_33]
          Length = 434

 Score =  338 bits (867), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 112/241 (46%), Positives = 160/241 (66%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T  GW+T
Sbjct: 2   LREDGRNFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVSDKVPSFLRGTGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+IGRALR+ +DL  LG R I IDCDVIQ
Sbjct: 62  AEYSMLPRATNERNPREASKGKLAGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG ++AL   ++ +     +      L  +VAAIS G +    +VDL Y 
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKL--LKEEILEENPLISNVAAISVGKVNSELMVDLKYS 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  +VD N +M   G  +EVQG+ E +TF++     +L+LA++ I  LIKLQ ++I+ 
Sbjct: 180 EDSAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIKLQDEIINQ 239

Query: 241 E 241
           E
Sbjct: 240 E 240


>gi|260774477|ref|ZP_05883391.1| ribonuclease PH [Vibrio metschnikovii CIP 69.14]
 gi|260610604|gb|EEX35809.1| ribonuclease PH [Vibrio metschnikovii CIP 69.14]
          Length = 238

 Score =  338 bits (867), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 119/240 (49%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  +Q+R I +TR  + YAEGS LV+FG+T +L  AT+EE VP W++    GW+T
Sbjct: 1   MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEETVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLKAMGEIMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+GA VA+ D   H+   +     +  +K HVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTAAISGASVAMADAFAHL--VAKGKLKANPMKSHVAAVSVGILGENILCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++E+QG+AE   FS +   A+L  A+  I D++  QK  ++ 
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLALLASAQKGIVDIVAAQKAALAE 238


>gi|219670395|ref|YP_002460830.1| ribonuclease PH [Desulfitobacterium hafniense DCB-2]
 gi|219540655|gb|ACL22394.1| ribonuclease PH [Desulfitobacterium hafniense DCB-2]
          Length = 247

 Score =  338 bits (867), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 113/236 (47%), Positives = 153/236 (64%), Gaps = 2/236 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  ++R + LTR  +   EGS L++ G T ++ TAT+EEKVP++ + T  GW+TA
Sbjct: 3   RFDGREAFELRPVKLTRGFTNIPEGSVLIEVGQTRVICTATVEEKVPLFKKGTGSGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALRSVVDL  LG R I +DCDVIQA
Sbjct: 63  EYSMLPRATQTRNPRESSKGKLTGRTMEIQRLIGRALRSVVDLKKLGERTIWLDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D + H+   +        +   +AA+S G + G  ++DL Y E
Sbjct: 123 DGGTRTASITGAYVALVDAVNHL--LAKGLIKENPILDSLAAVSVGKVDGMALLDLAYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           DS  +VD N VMT  G  VE+QG+AE   F ++     L LA+  I +L+ +QK  
Sbjct: 181 DSKAEVDMNVVMTGQGKFVEIQGTAEDIPFGREELDQFLELAEKGIQELMGMQKAA 236


>gi|110677820|ref|YP_680827.1| ribonuclease PH [Roseobacter denitrificans OCh 114]
 gi|123362332|sp|Q16D02|RNPH_ROSDO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|109453936|gb|ABG30141.1| ribonuclease PH [Roseobacter denitrificans OCh 114]
          Length = 237

 Score =  338 bits (867), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 125/239 (52%), Positives = 171/239 (71%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ N+MR +S+    +K+AEGS L+K GDTH+L TAT+E++VP +I+ +  GW+T
Sbjct: 1   MRPSGRELNEMRPVSIETGFTKHAEGSALIKIGDTHVLCTATIEDRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++RE+ +G+QGGR+ EIQR+IGR+LR+ VD  ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATNTRMRRESTAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +    +    S  L   VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDVI--SDPLVDPVAAISCGIYAGQPVMDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD NF+MT S  ++EVQ SAE ATFS+D    +++LA+  + +L+  QK   +
Sbjct: 179 EDSEAGVDGNFIMTGSKQLIEVQMSAEGATFSRDQMNQLMDLAEKGVGELVAAQKAATA 237


>gi|312877642|ref|ZP_07737599.1| ribonuclease PH [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795589|gb|EFR11961.1| ribonuclease PH [Caldicellulosiruptor lactoaceticus 6A]
          Length = 258

 Score =  338 bits (867), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 114/241 (47%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +++R I +TR   KYAEGSCL++ G+T ++ TAT+++KVP + + +  GWIT
Sbjct: 1   MRQDQRAYDELRPIKITRNFIKYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  R+    R  GRS EIQR+IGRALR+ ++  ALG R IIIDCDVIQ
Sbjct: 61  AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG ++A+ D  + + D   K   +  +   VAA+S G+  G  ++DL + 
Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--EKIIENFPITDFVAAVSVGICDGVEMLDLCFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VM D G  +E+QG+AE A FS + F  +L L K  I  +I++QK+V+  
Sbjct: 179 EDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQRLLELGKQGIQKIIEVQKEVLGE 238

Query: 241 E 241
           +
Sbjct: 239 D 239


>gi|315170973|gb|EFU14990.1| ribonuclease PH [Enterococcus faecalis TX1342]
          Length = 451

 Score =  338 bits (867), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   ++R+I++   V K+ EGS ++ FGDT ++ +AT+EEKVP ++R    GW+ 
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I++DCDVIQ
Sbjct: 62  AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   + H+            +K H+AA+S G+L  GY ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAINHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  VE+QG+ E ATFS D   AML   K  I +LI  QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELITYQKEAL 238


>gi|302865661|ref|YP_003834298.1| ribonuclease PH [Micromonospora aurantiaca ATCC 27029]
 gi|315502225|ref|YP_004081112.1| ribonuclease ph [Micromonospora sp. L5]
 gi|302568520|gb|ADL44722.1| ribonuclease PH [Micromonospora aurantiaca ATCC 27029]
 gi|315408844|gb|ADU06961.1| ribonuclease PH [Micromonospora sp. L5]
          Length = 242

 Score =  338 bits (867), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 116/240 (48%), Positives = 162/240 (67%), Gaps = 1/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ +Q+R ++LTR  S + EGS LV+FG T +L TA++ E VP W + +  GW+TA
Sbjct: 3   RPDGRQPDQLRPVTLTRGWSTHPEGSVLVEFGATRVLCTASVTEGVPRWRKGSGLGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+ VDL ALG   I++DCDV+QA
Sbjct: 63  EYAMLPRATNTRSDRESVRGKVGGRTHEISRLIGRSLRACVDLKALGENSIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKF-QLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTAAITGA+VALHD +  + +      ++ +V+   VAA+S G++ G P++DL Y 
Sbjct: 123 DGGTRTAAITGAYVALHDAVTWLAERKALAGKVEKVMHRSVAAVSVGVIGGEPMLDLCYA 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED T +VD N V T +G  VEVQG+ E   F++D   A+L+L      +L   Q+  +S+
Sbjct: 183 EDVTAEVDMNVVCTGTGDFVEVQGTGEAGVFARDQLDALLDLGVAGCLELADAQRKALSS 242


>gi|257069148|ref|YP_003155403.1| RNAse PH [Brachybacterium faecium DSM 4810]
 gi|256559966|gb|ACU85813.1| RNAse PH [Brachybacterium faecium DSM 4810]
          Length = 252

 Score =  338 bits (867), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 115/240 (47%), Positives = 160/240 (66%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+RE+ +TR    +AEGS L++FG T +L  A+    VP W + +  GW+TA
Sbjct: 12  RIDGRTPDQLREVRITRGWLDHAEGSALIEFGRTRVLCAASFTAGVPRWKQGSGSGWVTA 71

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T +R  RE+V G+ GGR+ EI R+IGR+LR+V+DL ALG   I +DCDV+QA
Sbjct: 72  EYAMLPRATNSRSPRESVKGKIGGRTHEISRLIGRSLRAVIDLDALGENTIQLDCDVLQA 131

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +  +     +QVL   V+AIS G++   P++DL+Y E
Sbjct: 132 DGGTRTAAITGAYVALADAISWGKQHTALPAAAQVLTDSVSAISVGIVDDRPLLDLEYRE 191

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D     D N V+T SG  VEVQG+AE A F +    A+L+LA    A L + Q+DV++ +
Sbjct: 192 DVAAGTDMNVVVTGSGSFVEVQGTAEGAPFDRAELGALLDLATGGCAQLAQTQQDVLAQQ 251


>gi|218556206|ref|YP_002389119.1| ribonuclease PH [Escherichia coli IAI1]
 gi|218697364|ref|YP_002405031.1| ribonuclease PH [Escherichia coli 55989]
 gi|254038843|ref|ZP_04872895.1| ribonuclease PH [Escherichia sp. 1_1_43]
 gi|218354096|emb|CAV00651.1| ribonuclease PH [Escherichia coli 55989]
 gi|218362974|emb|CAR00611.1| ribonuclease PH [Escherichia coli IAI1]
 gi|226838808|gb|EEH70835.1| ribonuclease PH [Escherichia sp. 1_1_43]
          Length = 246

 Score =  338 bits (867), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 127/240 (52%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 9   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 69  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D LQ + +  N    +  +KG VAA+S G++ G  I DL+Y 
Sbjct: 129 ADGGTRTASITGACVALADALQKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 186

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 187 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 246


>gi|220924628|ref|YP_002499930.1| ribonuclease PH [Methylobacterium nodulans ORS 2060]
 gi|254808593|sp|B8IFR7|RNPH_METNO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|219949235|gb|ACL59627.1| ribonuclease PH [Methylobacterium nodulans ORS 2060]
          Length = 237

 Score =  338 bits (867), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 135/239 (56%), Positives = 176/239 (73%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   ++R+++L R V++YAEGSCLV FG+T +L TA+LEE+ P W+R +  GWIT
Sbjct: 1   MRPSKRAPEELRKVTLERGVARYAEGSCLVTFGETRVLCTASLEERGPSWLRGSGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE  +G+  GR+QEIQR+IGR+LR+VV+L A+G RQI+IDCDV+Q
Sbjct: 61  AEYAMLPRATHERNRREVNAGKPSGRTQEIQRLIGRSLRAVVNLPAIGERQIVIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVALH+C   M   S        ++ HVAA+SCG+  G PI+DLDY 
Sbjct: 121 ADGGTRTASITGAWVALHECFTWMR--SRSIISVDPMRDHVAAVSCGIHKGTPILDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFV+T SG IVEVQG+AE   FS++ F  +L LAK  +A L+ LQK  + 
Sbjct: 179 EDSAAETDANFVITGSGGIVEVQGTAEVTPFSEEEFLGLLRLAKSGVAQLVALQKQAVG 237


>gi|294787314|ref|ZP_06752567.1| tRNA nucleotidyltransferase [Parascardovia denticolens F0305]
 gi|294484670|gb|EFG32305.1| tRNA nucleotidyltransferase [Parascardovia denticolens F0305]
          Length = 260

 Score =  337 bits (866), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 107/242 (44%), Positives = 157/242 (64%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q+R + +TR  ++  EGS L++ G+T +L TAT  + VP W R++  GW+T
Sbjct: 17  IRADGRAVDQLRPVKITRGWTQAPEGSVLIECGNTRVLCTATFTQGVPRWRRDSGLGWVT 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T +R  RE+V G+ GGR+ EI R+IGR LR +VD+ ALG  QI IDCDV+Q
Sbjct: 77  AEYAMIPRATADRTDRESVKGKVGGRTHEISRLIGRVLRGIVDMGALGENQIQIDCDVLQ 136

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA+VAL D +   +         +VL   V+A+S G++ G P++DL Y 
Sbjct: 137 ADGGTRTASVTGAYVALADAVSWAKRNKKIKAGKKVLTDQVSAVSVGIINGTPMLDLPYV 196

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS    D N  MT SG+ +E+QG+AE   FS+     +L+LA+    +L  +Q + +  
Sbjct: 197 EDSQAMTDMNVAMTGSGNFIEIQGTAEHRPFSRAELNTLLDLAEKGNRELQGMQAEALEQ 256

Query: 241 EV 242
            +
Sbjct: 257 AI 258


>gi|288942595|ref|YP_003444835.1| ribonuclease PH [Allochromatium vinosum DSM 180]
 gi|288897967|gb|ADC63803.1| ribonuclease PH [Allochromatium vinosum DSM 180]
          Length = 241

 Score =  337 bits (866), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 119/241 (49%), Positives = 162/241 (67%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R+ ++ R I  TR  +++AEGS LV+FGDT +L TA++E +VP +++    GWIT
Sbjct: 1   MRPSQRRPDEARPICFTRGFTRHAEGSVLVEFGDTRVLCTASVEPRVPPFLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG R+ REA  G+QGGR+ EIQR+IGRALR+ V L+ALG R I +DCDV+Q
Sbjct: 61  AEYGMLPRSTGERMPREAARGKQGGRTLEIQRLIGRALRAAVYLNALGERTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVAL + + H+         +  +K  +AA+S G+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGAWVALREAIDHLLASGQL--TADPIKTQIAAVSVGIYQGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS+ + D N VM   G  +EVQG+AE   F++    A+L L    I  +   Q+  + +
Sbjct: 179 EDSSAETDMNLVMDGEGRFIEVQGTAEGHPFTRAELDALLELGAAGIRSIQAAQRAALED 238

Query: 241 E 241
            
Sbjct: 239 R 239


>gi|315144635|gb|EFT88651.1| ribonuclease PH [Enterococcus faecalis TX2141]
 gi|315160934|gb|EFU04951.1| ribonuclease PH [Enterococcus faecalis TX0645]
          Length = 451

 Score =  337 bits (866), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   ++R+I++   V K+ EGS ++ FGDT ++ +AT+EEKVP ++R    GW+ 
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I++DCDVIQ
Sbjct: 62  AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   + H+            +K H+AA+S G+L  GY ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  VE+QG+ E ATFS D   AML   K  I +LI  QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELITYQKEAL 238


>gi|89895968|ref|YP_519455.1| hypothetical protein DSY3222 [Desulfitobacterium hafniense Y51]
 gi|89335416|dbj|BAE85011.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 247

 Score =  337 bits (866), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 113/236 (47%), Positives = 153/236 (64%), Gaps = 2/236 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  ++R + LTR  +   EGS L++ G T ++ TAT+EEKVP++ + T  GW+TA
Sbjct: 3   RFDGREAFELRPVKLTRGFTNIPEGSVLIEVGQTRVICTATVEEKVPLFKKGTGSGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALRSVVDL  LG R I +DCDVIQA
Sbjct: 63  EYSMLPRATQTRNHRESSKGKLTGRTMEIQRLIGRALRSVVDLKKLGERTIWLDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D + H+   +        +   +AA+S G + G  ++DL Y E
Sbjct: 123 DGGTRTASITGAYVALVDAVNHL--LAKGLIKENPILDSLAAVSVGKVDGMALLDLAYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           DS  +VD N VMT  G  VE+QG+AE   F ++     L LA+  I +L+ +QK  
Sbjct: 181 DSKAEVDMNVVMTGQGKFVEIQGTAEDIPFGREELDQFLELAEKGIQELMGMQKAA 236


>gi|329925260|ref|ZP_08280203.1| tRNA nucleotidyltransferase [Paenibacillus sp. HGF5]
 gi|328940093|gb|EGG36426.1| tRNA nucleotidyltransferase [Paenibacillus sp. HGF5]
          Length = 252

 Score =  337 bits (866), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 114/239 (47%), Positives = 164/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR+ +++R ++L+  V+KYAEGS  ++ GDT +L TAT++EKVP +++    GW+T
Sbjct: 1   MRSNGRKSDELRPMNLSTHVNKYAEGSVYIEMGDTKVLITATVDEKVPPFLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R +REA  G+  GR+ EIQR+IGRALRSVV+L ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATQSRNQREANRGKLSGRTMEIQRLIGRALRSVVNLHALGERTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITGA+VAL   +  + +          +  ++A+IS G+  G  ++DL+Y 
Sbjct: 121 ADGGTRTTSITGAFVALAIAVNKIAEQHKLAVF--PITDYLASISVGIAGGQALLDLNYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD N VMT SG  VEVQG+ E + FS++    +L L +  I +LI+ Q++ + 
Sbjct: 179 EDSKAKVDMNLVMTGSGKFVEVQGTGEESPFSREELDQILELGEQGIRELIERQQEALG 237


>gi|119947081|ref|YP_944761.1| ribonuclease PH [Psychromonas ingrahamii 37]
 gi|166228305|sp|A1T097|RNPH_PSYIN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|119865685|gb|ABM05162.1| RNAse PH [Psychromonas ingrahamii 37]
          Length = 239

 Score =  337 bits (866), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 118/241 (48%), Positives = 156/241 (64%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q REI +TR  + YAEGS L++ G+T +L  A++   VP +++    GW+T
Sbjct: 1   MRPSNRTPEQNREIKITRHYTDYAEGSVLIEMGNTKVLCNASVSGSVPRFLKGKGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+QGGR+ EIQR+I R+LR+ VDL+ALG   I +DCDVIQ
Sbjct: 61  AEYAMLPRATHIRNMREAAKGKQGGRTLEIQRLIARSLRAAVDLNALGENMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG  +AL D L  M       +    LK  +AA+S G+  G P+ DLDY 
Sbjct: 121 ADGGTRTAAITGGCIALADALNWMVKKGKLKK--SPLKQMIAAVSVGIYQGTPVCDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+SG ++E+Q +AE   FS +   +ML+LAK  I  L+  QK  ++ 
Sbjct: 179 EDSNAETDTNVVMTESGGLIEIQATAEDGAFSHEQLLSMLSLAKGGIEALVVEQKKALNA 238

Query: 241 E 241
           E
Sbjct: 239 E 239


>gi|227504000|ref|ZP_03934049.1| ribonuclease PH [Corynebacterium striatum ATCC 6940]
 gi|227199394|gb|EEI79442.1| ribonuclease PH [Corynebacterium striatum ATCC 6940]
          Length = 245

 Score =  337 bits (866), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 105/238 (44%), Positives = 157/238 (65%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +QMR + +TR  +    GS LV+FG+T ++ TA++E  VP + +++  GW+TA
Sbjct: 9   RADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEFGVPRFKKDSGEGWLTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R+ RE++ G+  GR+ EI R++GR+LR+ VDLS LG   I +DCDV+QA
Sbjct: 69  EYSMLPAATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLSELGENTIQLDCDVLQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +++++  S      + L   VAA+S G++ G   +DL Y E
Sbjct: 129 DGGTRTASITGAYVALADAIEYLK--SEGVVPGEPLLDPVAAVSVGIIDGQICLDLPYEE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N VM + G  VE+QG+ E   F +D   +ML++A+    +LI+ QK  + 
Sbjct: 187 DSRAEVDLNVVMQEGGDFVEIQGTGEHGLFGRDELNSMLDVAQKGCEELIEAQKAALG 244


>gi|86136764|ref|ZP_01055342.1| ribonuclease PH [Roseobacter sp. MED193]
 gi|85826088|gb|EAQ46285.1| ribonuclease PH [Roseobacter sp. MED193]
          Length = 237

 Score =  337 bits (866), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 127/237 (53%), Positives = 166/237 (70%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R+ N+MR +S+    +K+AEGSCL+K G+TH+L TA+LE +VP +I+ +  GW+T
Sbjct: 1   MRPSNRELNEMRSVSIETGFTKHAEGSCLIKMGETHVLCTASLEPRVPSFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA +G+QGGR+ EIQR+IGRALR+ VD  ALG RQI IDCDV+Q
Sbjct: 61  AEYGMLPRATNTRMRREAAAGKQGGRTVEIQRLIGRALRAGVDRVALGERQITIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR AAITG WVAL   +  +            L   V+AISCG+  G P++DLDY 
Sbjct: 121 ADGGTRCAAITGGWVALRLAVNKLMKAGEVKI--DPLMDPVSAISCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS   VD NFVMT SG ++EVQ SAE + FS+D    +++LA+    +L  LQK  
Sbjct: 179 EDSEAGVDGNFVMTGSGKLIEVQMSAEGSVFSRDQMNQLMDLAEKGTQELAALQKAA 235


>gi|261405343|ref|YP_003241584.1| ribonuclease PH [Paenibacillus sp. Y412MC10]
 gi|261281806|gb|ACX63777.1| ribonuclease PH [Paenibacillus sp. Y412MC10]
          Length = 252

 Score =  337 bits (866), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 114/239 (47%), Positives = 164/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR+ +++R ++L+  V+KYAEGS  ++ GDT +L TAT++EKVP +++    GW+T
Sbjct: 1   MRSNGRKSDELRPMNLSTHVNKYAEGSVYIEMGDTKVLITATVDEKVPPFLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R +REA  G+  GR+ EIQR+IGRALRSVV+L ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATQSRNQREANRGKLSGRTMEIQRLIGRALRSVVNLHALGERTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITGA+VAL   +  + +          +  ++A+IS G+  G  ++DL+Y 
Sbjct: 121 ADGGTRTTSITGAFVALAIAVNKIAEQHKLAVF--PITDYLASISVGIAGGQALLDLNYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD N VMT SG  VEVQG+ E + FS++    +L L +  I +LI+ Q++ + 
Sbjct: 179 EDSKAKVDMNLVMTGSGKFVEVQGTGEESPFSREELDQILELGEQGIRELIERQQEALG 237


>gi|237743440|ref|ZP_04573921.1| ribonuclease ph [Fusobacterium sp. 7_1]
 gi|229433219|gb|EEO43431.1| ribonuclease ph [Fusobacterium sp. 7_1]
          Length = 434

 Score =  337 bits (866), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 111/241 (46%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T  GW+T
Sbjct: 2   VREDGRNFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+IGRALR+ +DL  LG R I IDCDVIQ
Sbjct: 62  AEYSMLPRATNERNPREASKGKLAGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG ++AL   ++ +     +      L  +VAAIS G +    +VDL Y 
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKL--LKEEILEENPLISNVAAISVGKVNSELMVDLKYS 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   +VD N +M   G  +EVQG+ E +TF++     +L+LA++ I  LIKLQ ++I+ 
Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIKLQDEIINQ 239

Query: 241 E 241
           E
Sbjct: 240 E 240


>gi|311741212|ref|ZP_07715036.1| tRNA nucleotidyltransferase [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311303382|gb|EFQ79461.1| tRNA nucleotidyltransferase [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 242

 Score =  337 bits (866), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 104/238 (43%), Positives = 154/238 (64%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +QMR + +TR  +    GS LV+FG+T ++ TA++E  VP + R++  GW+TA
Sbjct: 6   RADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEYGVPRFKRDSGEGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R+ RE++ G+  GR+ EI R++GR+LR+ VDL  LG   I +DCDV+QA
Sbjct: 66  EYAMLPSATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLEELGENTIQLDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D + H++  +      + L   +AA+S G++ G   +DL Y E
Sbjct: 126 DGGTRTASITGAYVALADAIAHLK--AEGVVPGEPLLDPIAAVSVGIIDGEICLDLPYEE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N VM +SG  VE+QG+ E   F ++    ML++A+    +LI  QK  + 
Sbjct: 184 DSRAEVDLNVVMQESGDFVEIQGTGEHGLFGREELNEMLDVAQKGCRELIAAQKAALG 241


>gi|212638433|ref|YP_002314953.1| ribonuclease PH [Anoxybacillus flavithermus WK1]
 gi|226736883|sp|B7GH12|RNPH_ANOFW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|212559913|gb|ACJ32968.1| Ribonuclease PH [Anoxybacillus flavithermus WK1]
          Length = 255

 Score =  337 bits (866), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 116/242 (47%), Positives = 157/242 (64%), Gaps = 5/242 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR  +++R + +     K+ EGS L+  GDT ++ TA++E+KVP ++R    GWIT
Sbjct: 1   MRVDGRTNDELRPVHIEPNYLKHPEGSVLISIGDTKVICTASIEDKVPPFMRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  REA  G+  GR+ EIQR+IGRALRSVVDL  LG + I IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRNIREASKGKLSGRTMEIQRLIGRALRSVVDLQKLGEKTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--PIVDLD 178
           ADGGTRTA+ITGA+VA+   L  M +   K   +  +   +AA S G + G    I+DL+
Sbjct: 121 ADGGTRTASITGAFVAMTLALGKMVE--EKKLPALPITDFLAATSVG-IDGEHGIILDLN 177

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y EDS   VD N VMT SG  VE+QG+ E ATFS +    +L +A+  I +LI  QK+ +
Sbjct: 178 YIEDSKAQVDMNIVMTGSGRFVEIQGTGEEATFSYEQLLDLLTVAEKGIHELIARQKEAL 237

Query: 239 SN 240
            +
Sbjct: 238 GS 239


>gi|256004871|ref|ZP_05429845.1| ribonuclease PH [Clostridium thermocellum DSM 2360]
 gi|281416900|ref|ZP_06247920.1| ribonuclease PH [Clostridium thermocellum JW20]
 gi|255991181|gb|EEU01289.1| ribonuclease PH [Clostridium thermocellum DSM 2360]
 gi|281408302|gb|EFB38560.1| ribonuclease PH [Clostridium thermocellum JW20]
 gi|316941052|gb|ADU75086.1| ribonuclease PH [Clostridium thermocellum DSM 1313]
          Length = 263

 Score =  337 bits (866), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 112/240 (46%), Positives = 162/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR ++ +R + +TR   K+AEGS L++ GDT ++ TAT+++KVP + +NT  GW+T
Sbjct: 2   LRIDGRGQSDLRPVKITRNYIKHAEGSVLIEMGDTKVICTATVDDKVPPFKKNTGEGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  R+    +  GRSQEIQR+IGRALRSVV+L+ LG R+IIIDCDVIQ
Sbjct: 62  AEYSMLPRATAARNPRDISKLKLSGRSQEIQRLIGRALRSVVNLNLLGEREIIIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +VAL D  + + D  +       +   +AA+S G++ G  ++DL Y 
Sbjct: 122 ADGGTRTASITGGFVALVDACKKLVD--DGIIEKIPVTDFLAAVSVGIVDGVEMLDLCYM 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS    D N VMT  G  +E+Q + E+  F ++ F  +L+ A+  I+ LI++QKD +  
Sbjct: 180 EDSNAATDMNVVMTSKGEFIEIQATGEQLPFKKEQFDKLLSFAEKGISQLIEIQKDALGQ 239


>gi|296447435|ref|ZP_06889360.1| ribonuclease PH [Methylosinus trichosporium OB3b]
 gi|296255055|gb|EFH02157.1| ribonuclease PH [Methylosinus trichosporium OB3b]
          Length = 237

 Score =  337 bits (866), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 135/239 (56%), Positives = 175/239 (73%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  ++MR +S  R V++YAEGSCLVKFG+TH+L  A+LE+K P W+R    GW+T
Sbjct: 1   MRPSKRAPDEMRPVSFERGVARYAEGSCLVKFGNTHVLCAASLEDKPPPWLRGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+ SG+  GR+QEIQR+IGR+LR+V  L ALG RQ+++DCDV+Q
Sbjct: 61  AEYAMLPRATHTRTRRESSSGKPSGRTQEIQRLIGRSLRAVTHLPALGERQVVVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+GAW+ALHDC Q M   S        L+ HVAA+SCG+    P++DLDYG
Sbjct: 121 ADGGTRTAAISGAWLALHDCFQWMR--SRSIIKENPLRDHVAAVSCGVCDAGPVIDLDYG 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST   DANFV+T  G +VEVQ +AE A F++    AML+LA+  I  LI++QK  I+
Sbjct: 179 EDSTAKTDANFVITGGGGLVEVQSTAEAAVFTEADLSAMLSLARAGIGKLIEMQKAAIA 237


>gi|315227127|ref|ZP_07868914.1| tRNA nucleotidyltransferase [Parascardovia denticolens DSM 10105]
 gi|315119577|gb|EFT82710.1| tRNA nucleotidyltransferase [Parascardovia denticolens DSM 10105]
          Length = 263

 Score =  337 bits (866), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 107/242 (44%), Positives = 157/242 (64%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q+R + +TR  ++  EGS L++ G+T +L TAT  + VP W R++  GW+T
Sbjct: 20  IRADGRAVDQLRPVKITRGWTQAPEGSVLIECGNTRVLCTATFTQGVPRWRRDSGLGWVT 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T +R  RE+V G+ GGR+ EI R+IGR LR +VD+ ALG  QI IDCDV+Q
Sbjct: 80  AEYAMIPRATADRTDRESVKGKVGGRTHEISRLIGRVLRGIVDMGALGENQIQIDCDVLQ 139

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA+VAL D +   +         +VL   V+A+S G++ G P++DL Y 
Sbjct: 140 ADGGTRTASVTGAYVALADAVSWAKRNKKIKAGKKVLTDQVSAVSVGIINGTPMLDLPYV 199

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS    D N  MT SG+ +E+QG+AE   FS+     +L+LA+    +L  +Q + +  
Sbjct: 200 EDSQAMTDMNVAMTGSGNFIEIQGTAEHRPFSRAELNTLLDLAEKGNRELQGMQAEALEQ 259

Query: 241 EV 242
            +
Sbjct: 260 AI 261


>gi|23308945|ref|NP_601703.2| ribonuclease PH [Corynebacterium glutamicum ATCC 13032]
 gi|62391341|ref|YP_226743.1| ribonuclease PH [Corynebacterium glutamicum ATCC 13032]
 gi|24638170|sp|Q8NMR4|RNPH_CORGL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|21325272|dbj|BAB99894.1| RNase PH [Corynebacterium glutamicum ATCC 13032]
 gi|41326682|emb|CAF21164.1| PROBABLE RIBONUCLEASE PH [Corynebacterium glutamicum ATCC 13032]
          Length = 245

 Score =  337 bits (866), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 108/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++QMR + +TR  +    GS LV+FG+T ++ TA++E  VP + R++  GW+TA
Sbjct: 9   RFDGRAQDQMRAVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE+++G+  GR+ EI R+IGR+LR+ VDLS LG   I IDCDV+QA
Sbjct: 69  EYAMLPAATAERNRRESMAGKVKGRTHEISRLIGRSLRAAVDLSQLGENTIAIDCDVLQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D ++ +++          L   VAA+S G++ G   +DL Y E
Sbjct: 129 DGGTRTASITGAYVALADAIKVLQE--RGVVPGSPLLAPVAAVSVGLVDGNVCLDLPYEE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  DVD N VMT+ G  VE+QG+ E  TF++     ML+ A+    +L+  QK  + 
Sbjct: 187 DSRADVDLNVVMTEHGEFVEIQGTGEETTFTRAQLNDMLDHAEKGCRELVAAQKAALG 244


>gi|319441882|ref|ZP_07991038.1| ribonuclease PH [Corynebacterium variabile DSM 44702]
          Length = 256

 Score =  337 bits (866), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 110/237 (46%), Positives = 155/237 (65%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R + +TR  +    GS LV+FG+T ++ TA++ E VP + R++  GW+TA
Sbjct: 8   RFDGRAVDELRPVRITRGFTTNPAGSVLVEFGNTRVMCTASVSEGVPRFKRDSGEGWLTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R+ REA+ G+  GR+ EI R+IGR+LR+ VDL ALG   + IDCDV+QA
Sbjct: 68  EYAMLPSATAERMPREALKGKVKGRTHEISRLIGRSLRAAVDLRALGENTVNIDCDVLQA 127

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D L  ++         + L   VAA+S G++ G P +DL Y E
Sbjct: 128 DGGTRTASITGAYVALADALAVLQQ--RGVVPGEPLLDPVAAVSVGVIDGVPCLDLPYPE 185

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  DVD N VMT  G  VE+QG+ E A FS+     +L+LA+  + DL+ LQ+  +
Sbjct: 186 DSRADVDMNVVMTAEGRFVEIQGTGEHAEFSRSELNELLDLAEGGLYDLVDLQRAAL 242


>gi|288956860|ref|YP_003447201.1| ribonuclease PH [Azospirillum sp. B510]
 gi|288909168|dbj|BAI70657.1| ribonuclease PH [Azospirillum sp. B510]
          Length = 239

 Score =  337 bits (865), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 131/239 (54%), Positives = 171/239 (71%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R +SL    S+YAEGSC+V+FG+TH+L TA+++E VP +++NT  GW+T
Sbjct: 1   MRPSGRALDQLRTVSLEPGFSRYAEGSCMVRFGNTHVLCTASVDETVPRFLKNTGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+Q GR+QEIQR+IGRALR+V D SA+G +QI IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRTDREAAKGKQSGRTQEIQRLIGRALRAVTDRSAMGEKQIKIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VALH   QH+         +  L   VAA+SCG+  G  ++DLDY 
Sbjct: 121 ADGGTRTAAITGSYVALHLAFQHLIQIGAL--KTMPLTDQVAAVSCGIYQGNAVLDLDYD 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    DANFV+T    IVE+QG+AE + FS+  F  +L LA+  + +L  LQK  + 
Sbjct: 179 EDSKAQADANFVLTGKAGIVEIQGTAEESPFSEPQFMELLALARKGVTELAALQKQALG 237


>gi|23099561|ref|NP_693027.1| ribonuclease PH [Oceanobacillus iheyensis HTE831]
 gi|61216060|sp|Q8EPJ5|RNPH_OCEIH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|22777791|dbj|BAC14062.1| ribonuclease PH (tRNA nucleotidyltransferase) [Oceanobacillus
           iheyensis HTE831]
          Length = 244

 Score =  337 bits (865), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 163/243 (67%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R+ NQ+R I++T     + EGS L++ G+T ++  A++E++VP ++R    GWIT
Sbjct: 1   MRNDQREVNQLRNINITTNYISHPEGSVLIEMGNTKVICNASIEDRVPPFMRGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALRSVVDL  +G R + IDCDVIQ
Sbjct: 61  AEYAMLPRATAQRNIRESSKGKVSGRTMEIQRLIGRALRSVVDLDQIGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VA+      + +     +    ++ ++AAIS G+L  G  I+DL+Y
Sbjct: 121 ADGGTRTASITGAFVAMSLAFAKLVEAKTLKKT--PIQDYLAAISVGVLTNGTEILDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N VMT  G  VE+QG+ E ATF+ +    ML L ++ I  L+K+QK++++
Sbjct: 179 EEDSEAAVDMNIVMTGEGEFVEIQGTGEEATFTPNQLQNMLKLGEEGIQQLVKIQKELLA 238

Query: 240 NEV 242
           +++
Sbjct: 239 DKL 241


>gi|215488923|ref|YP_002331354.1| ribonuclease PH [Escherichia coli O127:H6 str. E2348/69]
 gi|254808587|sp|B7UM50|RNPH_ECO27 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|215266995|emb|CAS11440.1| ribonuclease PH [Escherichia coli O127:H6 str. E2348/69]
 gi|323965909|gb|EGB61357.1| ribonuclease PH [Escherichia coli M863]
 gi|323975137|gb|EGB70242.1| ribonuclease PH [Escherichia coli TW10509]
 gi|327250769|gb|EGE62471.1| ribonuclease PH [Escherichia coli STEC_7v]
          Length = 238

 Score =  337 bits (865), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 125/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  + +  N    +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238


>gi|89098915|ref|ZP_01171795.1| ribonuclease PH [Bacillus sp. NRRL B-14911]
 gi|89086319|gb|EAR65440.1| ribonuclease PH [Bacillus sp. NRRL B-14911]
          Length = 277

 Score =  337 bits (865), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 113/243 (46%), Positives = 158/243 (65%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR++ Q+R I +      + EGS L+  G+T ++ TA+++E+VP ++R    GWIT
Sbjct: 31  MRKDGREQLQLRPIHIETNYLMHPEGSVLISVGNTKVICTASIDERVPPFMRGEGKGWIT 90

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 91  AEYSMLPRATEQRNIREAAKGKITGRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQ 150

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDY 179
           ADGGTRTA+ITGA+VA+   ++ +   SNK      +   +AA S G+L     ++DL+Y
Sbjct: 151 ADGGTRTASITGAFVAMAIAVEKL--YSNKKLSKFPITQFLAATSVGILENKQVVLDLNY 208

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  +VD N VMT +G  VE+QG+ E ATFS      +L  A++ +  L  +QK V+ 
Sbjct: 209 AEDSKAEVDMNVVMTGNGEFVELQGTGEEATFSASQLTELLKAAEEGVGRLFDIQKQVLG 268

Query: 240 NEV 242
            ++
Sbjct: 269 EKI 271


>gi|47168526|pdb|1OYS|A Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease
           Rnase Ph From Bacillus Subtilis
          Length = 245

 Score =  337 bits (865), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 107/243 (44%), Positives = 158/243 (65%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GRQ +++R I+       + EGS L+  G+T ++  A++E++VP ++R    GWIT
Sbjct: 1   MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP++T  +  +E+  G+  GR+ EIQR+IGRALR+VVDL  LG R I IDCDVIQ
Sbjct: 61  AEYSMLPQATNQQTIQESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA++A+   +  +         +  +   +AAIS G+      ++DL+Y
Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLIKAGTI--KTNPITDFLAAISVGIDKEQGILLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS+ +VD N +MT SG  VE+QG+ E ATFS++    +L LA+  I +LI  QK+V+ 
Sbjct: 179 EEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLG 238

Query: 240 NEV 242
           + +
Sbjct: 239 DSL 241


>gi|206900914|ref|YP_002251052.1| ribonuclease PH [Dictyoglomus thermophilum H-6-12]
 gi|226736903|sp|B5YEU4|RNPH_DICT6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|206740017|gb|ACI19075.1| ribonuclease PH [Dictyoglomus thermophilum H-6-12]
          Length = 240

 Score =  337 bits (865), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 116/239 (48%), Positives = 160/239 (66%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+  R    +R + +TR+  KY  GS L++ G+T ++ T ++EEKVP +++ T  GW+T
Sbjct: 2   IRIDKRSNVDLRPVKITRKYLKYPLGSVLIEMGETKVICTVSMEEKVPPFLKGTNQGWLT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST  R  R+ V G   GRSQEIQR+IGR+LR+V+D S LG R I ID DVIQ
Sbjct: 62  AEYGMLPGSTPERKVRDVVKGVINGRSQEIQRLIGRSLRAVIDFSKLGERTIWIDTDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL+D L+ ++   +       +K  VAA+S G++ G  ++DL   
Sbjct: 122 ADGGTRTAAITGAFVALYDALEKLKR--DGVIKEIPIKEFVAAVSVGIVDGEILLDLSAN 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED   +VD N VMT+SG  VE+QG+AE+  F+ +    MLNLAK  I  LI++QK  + 
Sbjct: 180 EDMRAEVDMNVVMTESGKFVEIQGTAEKTPFTYEQLQQMLNLAKQGIMKLIEIQKKALG 238


>gi|94309797|ref|YP_583007.1| ribonuclease PH [Cupriavidus metallidurans CH34]
 gi|166228306|sp|Q1LQ38|RNPH_RALME RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|93353649|gb|ABF07738.1| ribonuclease PH [Cupriavidus metallidurans CH34]
          Length = 238

 Score =  337 bits (865), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 127/239 (53%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  + +R I+LTR+ +++AEGS L  FGDT +L TA++  KVP   + +  GW+T
Sbjct: 1   MRPSGRAADALRPITLTRQYTRHAEGSVLSAFGDTKVLCTASVLAKVPPHKKGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRA+RSV DL+ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTIHLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VA HD +  M    +    +  ++  VAA+S GM+ G P++DLDY 
Sbjct: 121 ADGGTRTAAITGAFVAAHDAVSAM--LRDGQIKASPIRDFVAAVSVGMVNGVPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT SG  VEVQG+AE   FS+    AM  LA+  IA+L++ QK  + 
Sbjct: 179 EDSNCDTDMNVVMTGSGGFVEVQGTAEGTPFSRADLDAMTRLAEAGIAELVRHQKQALG 237


>gi|326385028|ref|ZP_08206700.1| ribonuclease PH [Gordonia neofelifaecis NRRL B-59395]
 gi|326196242|gb|EGD53444.1| ribonuclease PH [Gordonia neofelifaecis NRRL B-59395]
          Length = 252

 Score =  337 bits (865), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 113/240 (47%), Positives = 161/240 (67%), Gaps = 1/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R I  TR  + +  GS LV+FG+T ++ TA++ E VP W R +  GW+TA
Sbjct: 4   RADGRADDELRPIKFTRGFTSHPAGSVLVEFGNTRVMCTASVTEGVPSWRRGSGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R KRE+V G+ GGR+ EI R+IGR+LR+ +DL+ALG   I IDCDV+QA
Sbjct: 64  EYSMLPAATHERSKRESVRGKIGGRTHEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++     K    Q L   +AA+S G++ G   +DL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVTYL-GAGGKLADPQPLSCIIAAVSVGVVDGRVRLDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  +VD N V TD+G +VEVQG+ E ATF++     ML++A   I +++  Q++V++  
Sbjct: 183 DSRAEVDMNVVATDAGTLVEVQGTGEGATFARGTLDKMLDVACAGIENIVAAQREVLAQP 242


>gi|171057396|ref|YP_001789745.1| ribonuclease PH [Leptothrix cholodnii SP-6]
 gi|170774841|gb|ACB32980.1| ribonuclease PH [Leptothrix cholodnii SP-6]
          Length = 241

 Score =  337 bits (865), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 121/238 (50%), Positives = 162/238 (68%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  + +R + +TR  +K+AEGS L++FGDT +L TA++EEKVP   + +  GW+TA
Sbjct: 5   RPLGRAADALRPVRITRSYTKHAEGSVLIEFGDTQVLCTASVEEKVPPHKKGSGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR V DL+ALG R I+IDCDV+QA
Sbjct: 65  EYGMLPRATHTRSAREAAKGKQSGRTQEIQRLIGRSLRCVFDLAALGERSILIDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA HD +Q +   +        ++  VAA+S G+L G  ++DL+Y E
Sbjct: 125 DGGTRTASITGAFVAAHDAVQGL--IAQGKLKRSPIRDFVAAVSVGILDGVALLDLEYVE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMT +G  VEVQG+AE   FS+     +L L    IA+L+  QK  + 
Sbjct: 183 DSACDTDMNIVMTGAGGFVEVQGTAEGVAFSRAEMDQLLALGSAGIAELVAAQKAALG 240


>gi|119475382|ref|ZP_01615735.1| ribonuclease PH [marine gamma proteobacterium HTCC2143]
 gi|119451585|gb|EAW32818.1| ribonuclease PH [marine gamma proteobacterium HTCC2143]
          Length = 239

 Score =  337 bits (865), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 124/238 (52%), Positives = 164/238 (68%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+REI++TR  + +AEGS LV FGDT ++ TA++E+ VP ++R T  GWITA
Sbjct: 3   RPSGRSIDQLREITITRNFTCHAEGSVLVTFGDTKVICTASVEKNVPHFLRGTGQGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG+R+ REA  G+QGGR+ EIQR+IGR+LR+ VDL  LG  QI IDCDVIQA
Sbjct: 63  EYGMLPRSTGDRMGREAARGKQGGRTVEIQRLIGRSLRAAVDLKVLGENQITIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D +  M +          LK  +AA+S G+  G  ++DLDY E
Sbjct: 123 DGGTRTASITGACVALVDAITAMRE--QGIITGNPLKHMIAAVSVGIYQGTAVLDLDYAE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  + D N +MT+ G  +EVQG+AE   +S+     +L LA   I  LI+ Q+  ++
Sbjct: 181 DSNAETDMNVIMTEQGGFIEVQGTAEGEPYSRIELDQLLGLADAGIQTLIEKQRVALA 238


>gi|146296019|ref|YP_001179790.1| ribonuclease PH [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|166228275|sp|A4XI64|RNPH_CALS8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145409595|gb|ABP66599.1| RNAse PH [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 258

 Score =  337 bits (865), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 112/241 (46%), Positives = 160/241 (66%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  N++R I +TR   KYAEGSCL++ G+T ++ TAT+++KVP + + +  GWIT
Sbjct: 1   MRQDQRSYNELRPIKITRNFIKYAEGSCLIEMGNTKVIITATIDDKVPPFKKGSGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  R+    R  GRS EIQR+IGRALR+ ++  ALG R II+DCDVIQ
Sbjct: 61  AEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIILDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG ++A+ D  + + D  +K   +  +   VAA+S G+  G  ++DL + 
Sbjct: 121 ADGGTRTASITGGFIAMFDACKKLYD--DKVIENFPITDFVAAVSVGICDGVEMLDLCFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VM D G  +E+QG+AE   F+Q+ F  +L L K  I  +I++Q++V+  
Sbjct: 179 EDSKASVDMNLVMNDKGEFIEIQGTAEGGAFTQEQFEKLLELGKQGIQKIIEIQREVLGE 238

Query: 241 E 241
           +
Sbjct: 239 D 239


>gi|227518377|ref|ZP_03948426.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX0104]
 gi|227074055|gb|EEI12018.1| tRNA nucleotidyltransferase [Enterococcus faecalis TX0104]
          Length = 451

 Score =  337 bits (865), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 118/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   ++R+I++   V K+ EGS ++ FGDT ++ +AT+EEKVP ++R    GW+ 
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R +++DCDVIQ
Sbjct: 62  AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSVVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   + H+            +K H+AA+S G+L  GY ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  VE+QG+ E ATFS D   AML   K  I +LI  QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238


>gi|153208640|ref|ZP_01946892.1| ribonuclease PH [Coxiella burnetii 'MSU Goat Q177']
 gi|161829800|ref|YP_001596248.1| ribonuclease PH [Coxiella burnetii RSA 331]
 gi|165919767|ref|ZP_02219510.1| ribonuclease PH [Coxiella burnetii RSA 334]
 gi|61216043|sp|Q83EL9|RNPH_COXBU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043758|sp|A9KGR9|RNPH_COXBN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043759|sp|A9NB33|RNPH_COXBR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|120575826|gb|EAX32450.1| ribonuclease PH [Coxiella burnetii 'MSU Goat Q177']
 gi|161761667|gb|ABX77309.1| ribonuclease PH [Coxiella burnetii RSA 331]
 gi|165916850|gb|EDR35454.1| ribonuclease PH [Coxiella burnetii RSA 334]
          Length = 237

 Score =  337 bits (865), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 115/239 (48%), Positives = 164/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  N++R +S T + ++YAEGS LV  G+T ++  A++ E VP +++N++ GW+T
Sbjct: 1   MRPSKRAANELRPLSFTTQFTRYAEGSVLVTLGNTKVICNASIVEGVPRFLKNSEQGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+IGR+LR+ +DL  LG   I IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMDREASRGKQGGRTVEIQRLIGRSLRAALDLKLLGPYTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI G+ +A+ + L+H++        +  LK  VAA+S G+  G P++DLDY 
Sbjct: 121 ADGGTRTAAINGSCIAMIEALRHLQR--KGILQTDPLKHKVAAVSVGIYKGVPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N VMTD+   +E+QG+AE   F      A++NLA+  I  +I+ Q++ +S
Sbjct: 179 EDSNAHTDMNVVMTDNDAFIEIQGTAEGDAFHAKELDALINLARHGIKQIIEKQQEALS 237


>gi|325294219|ref|YP_004280733.1| ribonuclease PH [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325064667|gb|ADY72674.1| Ribonuclease PH [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 235

 Score =  337 bits (865), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 116/239 (48%), Positives = 165/239 (69%), Gaps = 7/239 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R + +T    K+AEGSCL++FGDT ++ TA++EEK+P +++ T  GWIT
Sbjct: 2   IRNDGRKIDELRPVKITVDYIKHAEGSCLIEFGDTKVICTASVEEKIPPFLKGTGQGWIT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  GR  GR+QEIQR+IGR++RS VDL+ALG   + IDCDVIQ
Sbjct: 62  AEYSMLPRATATRTIRESAKGRLTGRTQEIQRLIGRSVRSTVDLTALGEITVWIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL+  L+ ++           +K  VAA+S G++ G  ++DL+Y 
Sbjct: 122 ADGGTRTASITGAFVALYRALEKIDKL-------DAVKNFVAAVSVGIVGGEYLLDLNYE 174

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  +VD N VM D G  VE+QG+AE   FS+     +L+L +  I  LI  QK+++ 
Sbjct: 175 EDSIAEVDMNIVMNDVGEFVELQGTAEGKPFSRKDLEKLLSLGEKGITKLILKQKEILG 233


>gi|300721256|ref|YP_003710526.1| RNase PH [Xenorhabdus nematophila ATCC 19061]
 gi|297627743|emb|CBJ88269.1| RNase PH [Xenorhabdus nematophila ATCC 19061]
          Length = 247

 Score =  337 bits (865), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 117/240 (48%), Positives = 161/240 (67%), Gaps = 2/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R +GR   Q+R I +TR  +K+AEGS LV+FGDT +L  A++EE +P +++    GWITA
Sbjct: 7   RPAGRTAGQVRPIKMTRHYTKHAEGSVLVEFGDTKVLCNASVEEGIPRFLKGQGQGWITA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T +R  REA  G+Q GR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQA
Sbjct: 67  EYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAI+GA VAL D L  +   ++       LK  VAA+S G++ G  + DL+Y E
Sbjct: 127 DGGTRTAAISGACVALVDALNKL--VADGKLKESPLKSMVAAVSVGIVGGEGLCDLEYVE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  + D N VM D G ++EVQG+AE   FS D   ++L+LAK+ +  + + Q+D +  +
Sbjct: 185 DSAAETDMNVVMIDDGRMIEVQGTAEGEPFSHDELLSLLSLAKEGLETIFEAQRDALKQD 244


>gi|318057177|ref|ZP_07975900.1| ribonuclease PH [Streptomyces sp. SA3_actG]
 gi|318078066|ref|ZP_07985398.1| ribonuclease PH [Streptomyces sp. SA3_actF]
 gi|333024799|ref|ZP_08452863.1| putative ribonuclease PH [Streptomyces sp. Tu6071]
 gi|332744651|gb|EGJ75092.1| putative ribonuclease PH [Streptomyces sp. Tu6071]
          Length = 241

 Score =  337 bits (864), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 115/239 (48%), Positives = 155/239 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R +S+ R  SK+AEGS LV FGDT +L TA+  E VP W + +  GW+TA
Sbjct: 3   RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+VVD  ALG   +++DCDV+QA
Sbjct: 63  EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDTRALGENTVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D ++  +           L+  V+A+S G++   P +DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGIVDSVPYLDLRYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   + D N V T  G  VEVQG+AE A F +    A+L+LA    ADL  LQ++ +  
Sbjct: 183 DVRAETDMNVVRTGDGRFVEVQGTAEAAPFDRAELDALLDLASAGCADLAALQREALEG 241


>gi|170766572|ref|ZP_02901025.1| ribonuclease PH [Escherichia albertii TW07627]
 gi|170124010|gb|EDS92941.1| ribonuclease PH [Escherichia albertii TW07627]
          Length = 238

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 126/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  + +  N    +  +KG VAA+S G++ G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238


>gi|121997764|ref|YP_001002551.1| ribonuclease PH [Halorhodospira halophila SL1]
 gi|166228286|sp|A1WVN7|RNPH_HALHL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|121589169|gb|ABM61749.1| RNAse PH [Halorhodospira halophila SL1]
          Length = 238

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 120/240 (50%), Positives = 169/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +++R IS+ R+ +K+AEGS L+ FGDT +L TA++E +VP W+R    GW+T
Sbjct: 1   MRPSGRRADELRPISIQRQFTKHAEGSVLIGFGDTRVLCTASVEARVPPWLRGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+ EIQR+IGR+LR+ VDL ALG R +++DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRSDREAARGKQQGRTVEIQRLIGRSLRAAVDLQALGERSVVVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D L+ +     +   +  L G VA++S G+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGAFVALTDALEGLVR--QRALPASPLHGQVASVSVGVYRGEPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   + D N VM D+G  +E+QG+AE   F +D    ML LA+  + +L++ Q++ ++ 
Sbjct: 179 EDGEAETDMNVVMNDAGAFIELQGTAEGHAFRRDELDRMLALAEKGVGELLQHQQEALAT 238


>gi|260219850|emb|CBA26795.1| Ribonuclease PH [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 242

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 120/240 (50%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R  + +R + +TR  + +AEGS L++FG+T +L TA++EEKVP   R +  GW+T
Sbjct: 5   VRQGARAADALRPVRITRHYTMHAEGSVLIEFGNTKVLCTASVEEKVPPHKRGSGEGWVT 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+Q GR+QEIQR+IGR+LR+V DL  LG R I +DCDVIQ
Sbjct: 65  AEYGMLPRATHSRSDREAARGKQTGRTQEIQRLIGRSLRAVFDLKKLGERTIQLDCDVIQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VA  D +  +       +    +   VAAIS G++ G P++DL+Y 
Sbjct: 125 ADGGTRTAAITGAFVAAQDAVNGLLAAGKITET--PITAAVAAISVGIVEGTPLLDLEYT 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT +GH VEVQG+AE  TF++     +L LA+  + +L+ LQ+ V+S 
Sbjct: 183 EDSACDTDMNVVMTGAGHFVEVQGTAEGVTFTRAEMDQLLTLAEKGVGELMLLQQQVLSK 242


>gi|124267890|ref|YP_001021894.1| tRNA nucleotidyltransferase [Methylibium petroleiphilum PM1]
 gi|124260665|gb|ABM95659.1| tRNA nucleotidyltransferase [Methylibium petroleiphilum PM1]
          Length = 241

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 164/239 (68%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R  + +R +++TRR +K+AEGS L+ FGDT +L TA++EEKVP   R +  GW+TA
Sbjct: 5   RTQARAADALRPLTITRRYTKHAEGSVLIAFGDTKVLCTASVEEKVPPHKRGSGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR+V DL ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERSIHLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VA HD +  +   +     +  ++  VAA+S G++ G P++DL+Y E
Sbjct: 125 DGGTRTAAITGAYVAAHDAVTWL--LAQGKIGASPIREPVAAVSVGIVQGTPLLDLEYIE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  D D N VMT +GH +EVQG+AE A FS+     +L LA+  I  L+  Q   + +
Sbjct: 183 DSACDTDMNVVMTGAGHFIEVQGTAEGAAFSRAEMDRLLALAEQGIRTLVAAQAAALKD 241


>gi|146337341|ref|YP_001202389.1| ribonuclease PH [Bradyrhizobium sp. ORS278]
 gi|166228267|sp|A4YJR3|RNPH_BRASO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|146190147|emb|CAL74139.1| RNase PH [Bradyrhizobium sp. ORS278]
          Length = 237

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 137/239 (57%), Positives = 182/239 (76%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  ++MR +SL R V KYAEGSCLVKFGDTH+L TATLE+++P W++    GWIT
Sbjct: 1   MRPSRRAPDEMRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEDRLPPWLKGQGRGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+ EIQR+IGR+LR+ +DL ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATLERTRREASAGKQTGRTVEIQRLIGRSLRTAIDLEALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL DC++ M+  +     ++VL+ +VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALADCIRWMK--ARNMIKTEVLRTNVAAVSCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFVMT  G I+EVQG+AE+  FS+  F A++ LA+  +  L+ LQK  ++
Sbjct: 179 EDSEAETDANFVMTGDGRIIEVQGTAEKTPFSEAEFLALMALARKGVGRLVDLQKMAVA 237


>gi|228993220|ref|ZP_04153141.1| Ribonuclease PH [Bacillus pseudomycoides DSM 12442]
 gi|228999269|ref|ZP_04158849.1| Ribonuclease PH [Bacillus mycoides Rock3-17]
 gi|229006824|ref|ZP_04164457.1| Ribonuclease PH [Bacillus mycoides Rock1-4]
 gi|228754446|gb|EEM03858.1| Ribonuclease PH [Bacillus mycoides Rock1-4]
 gi|228760466|gb|EEM09432.1| Ribonuclease PH [Bacillus mycoides Rock3-17]
 gi|228766546|gb|EEM15188.1| Ribonuclease PH [Bacillus pseudomycoides DSM 12442]
          Length = 245

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 115/243 (47%), Positives = 163/243 (67%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GRQ  ++R I L     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGRQAAELRNIHLHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++     ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEDQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  GH VEVQG+ E ATFS+     +L+ A++ I  LI+ QK+ + 
Sbjct: 179 AEDSQADVDMNVIMTGKGHFVEVQGTGEEATFSRAELNELLDAAENGILQLIEKQKEALG 238

Query: 240 NEV 242
           + V
Sbjct: 239 DIV 241


>gi|198284080|ref|YP_002220401.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667606|ref|YP_002426735.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198248601|gb|ACH84194.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519819|gb|ACK80405.1| ribonuclease PH [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 242

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 123/236 (52%), Positives = 162/236 (68%), Gaps = 2/236 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R SGR  + +R + +TR  +K+AEGS L+  GDT +L TA++EEKVP ++R    GW+T
Sbjct: 2   IRPSGRNADALRPVQVTRNFTKHAEGSVLIACGDTKVLCTASVEEKVPPFLRGAGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  RV RE+  GR GGR+ EIQR+IGR+LR+ VDL ALG R I +DCDV+Q
Sbjct: 62  AEYSMLPRATRERVARESAKGRIGGRTHEIQRLIGRSLRAAVDLQALGERTIWVDCDVLQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +A+ D +QH+         +  L+  VAA+S G+  G  ++DLDY 
Sbjct: 122 ADGGTRTASITGACLAVADAVQHLRTVGQL--RNNPLRDWVAAVSVGVYQGQAVLDLDYA 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           EDS  DVD N VMT +G  VEVQG+AE A FS +    ML LA+  IA+L+  Q  
Sbjct: 180 EDSNADVDMNVVMTGAGAFVEVQGTAEGAVFSAEQMAEMLALARKGIAELVARQHQ 235


>gi|163742618|ref|ZP_02150004.1| ribonuclease PH [Phaeobacter gallaeciensis 2.10]
 gi|161384203|gb|EDQ08586.1| ribonuclease PH [Phaeobacter gallaeciensis 2.10]
          Length = 237

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 127/237 (53%), Positives = 167/237 (70%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +QMR +S+    +K+AEGSCL+K GDTH+L TAT+E++VP +I+ +  GW+T
Sbjct: 1   MRPSGRNLDQMRAVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA  G+QGGR+ EIQR+IGRALR+ VD  ALG RQI IDCDV+Q
Sbjct: 61  AEYGMLPRATNTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRVALGERQISIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +            L   VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKTGEVKI--DPLVDPVAAVSCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS   VD NF+MT SG ++EVQ SAE + FS++    +++LA    A+L +LQK  
Sbjct: 179 EDSEAGVDGNFIMTGSGQLIEVQMSAEGSMFSREQMNTLMDLATKGTAELAELQKAA 235


>gi|256026996|ref|ZP_05440830.1| ribonuclease PH [Fusobacterium sp. D11]
 gi|289764980|ref|ZP_06524358.1| ribonuclease ph [Fusobacterium sp. D11]
 gi|289716535|gb|EFD80547.1| ribonuclease ph [Fusobacterium sp. D11]
          Length = 428

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 111/241 (46%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  N+ R+I +T+ ++ YAEGS L++ G+T ++ TA++ +KVP ++R T  GW+T
Sbjct: 2   VREDGRNFNEERKIKITKNINIYAEGSVLIEVGNTKVICTASVTDKVPSFLRGTGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+IGRALR+ +DL  LG R I IDCDVIQ
Sbjct: 62  AEYSMLPRATNERNPREASKGKLAGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG ++AL   ++ +     +      L  +VAAIS G +    +VDL Y 
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKL--LKEEILEENPLISNVAAISVGKVNSELMVDLKYS 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   +VD N +M   G  +EVQG+ E +TF++     +L+LA++ I  LIKLQ ++I+ 
Sbjct: 180 EDFAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIKLQDEIINQ 239

Query: 241 E 241
           E
Sbjct: 240 E 240


>gi|209364175|ref|YP_001425114.2| ribonuclease PH [Coxiella burnetii Dugway 5J108-111]
 gi|212213192|ref|YP_002304128.1| ribonuclease PH [Coxiella burnetii CbuG_Q212]
 gi|212218134|ref|YP_002304921.1| ribonuclease PH [Coxiella burnetii CbuK_Q154]
 gi|215918932|ref|NP_819342.2| ribonuclease PH [Coxiella burnetii RSA 493]
 gi|206583817|gb|AAO89856.2| ribonuclease PH [Coxiella burnetii RSA 493]
 gi|207082108|gb|ABS77511.2| ribonuclease PH [Coxiella burnetii Dugway 5J108-111]
 gi|212011602|gb|ACJ18983.1| ribonuclease PH [Coxiella burnetii CbuG_Q212]
 gi|212012396|gb|ACJ19776.1| ribonuclease PH [Coxiella burnetii CbuK_Q154]
          Length = 239

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 115/239 (48%), Positives = 164/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  N++R +S T + ++YAEGS LV  G+T ++  A++ E VP +++N++ GW+T
Sbjct: 3   MRPSKRAANELRPLSFTTQFTRYAEGSVLVTLGNTKVICNASIVEGVPRFLKNSEQGWLT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+IGR+LR+ +DL  LG   I IDCDVIQ
Sbjct: 63  AEYGMLPRSTHSRMDREASRGKQGGRTVEIQRLIGRSLRAALDLKLLGPYTITIDCDVIQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI G+ +A+ + L+H++        +  LK  VAA+S G+  G P++DLDY 
Sbjct: 123 ADGGTRTAAINGSCIAMIEALRHLQR--KGILQTDPLKHKVAAVSVGIYKGVPVLDLDYA 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N VMTD+   +E+QG+AE   F      A++NLA+  I  +I+ Q++ +S
Sbjct: 181 EDSNAHTDMNVVMTDNDAFIEIQGTAEGDAFHAKELDALINLARHGIKQIIEKQQEALS 239


>gi|159046003|ref|YP_001534797.1| ribonuclease PH [Dinoroseobacter shibae DFL 12]
 gi|189043761|sp|A8LPD1|RNPH_DINSH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157913763|gb|ABV95196.1| ribonuclease PH [Dinoroseobacter shibae DFL 12]
          Length = 237

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 129/237 (54%), Positives = 173/237 (72%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ ++MR +S+    +++AEGSCL+  G+T +L TA++EE+VP ++RNT  GW+T
Sbjct: 1   MRPSGRQTHEMRGVSIETGFTRHAEGSCLISMGETRVLCTASVEERVPPFLRNTGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+QEIQR+IGR+LR+ VD  ALG RQI IDCDVIQ
Sbjct: 61  AEYGMLPRATHTRGRREAAAGKQSGRTQEIQRLIGRSLRAGVDRVALGERQITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITGAWVAL   +  +    +    +  L  HVAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGAWVALRLAVNKLMKAGDII--TDPLTDHVAAVSCGLYAGQPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS    DANFVMT SG ++EVQGSAE A FS++    +++LA+  +A+L+  QK  
Sbjct: 179 EDSEAGTDANFVMTGSGGLIEVQGSAEGAPFSRNALNTLMDLAEVGVAELVAAQKAA 235


>gi|153876824|ref|ZP_02003946.1| ribonuclease PH [Beggiatoa sp. PS]
 gi|152066712|gb|EDN66054.1| ribonuclease PH [Beggiatoa sp. PS]
          Length = 240

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 123/242 (50%), Positives = 173/242 (71%), Gaps = 2/242 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  N++R+I+ TR  + +AEGS L +FG T ++   +++E+VP +I++ K GW+T
Sbjct: 1   MRPSGRAPNELRQINFTRHYTCHAEGSVLAEFGRTKVICNVSIDERVPRFIKDKKSGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  GRQGGR+ EIQR+IGR+LR+VV+L ALG R + IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMSREASRGRQGGRTLEIQRLIGRSLRAVVNLEALGERTVNIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG+++AL D +QH+     +      + G +AA+S G+  G PI+DLDY 
Sbjct: 121 ADGGTRTAAITGSYIALVDAMQHL--LKKRLIRKNPIHGAIAAVSVGIYKGIPILDLDYN 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N +M D+   VE+QG+AE   F QD    ML+LAK+  + L++ Q  V+++
Sbjct: 179 EDSDAETDMNIIMNDAFAYVEIQGTAEGHAFRQDELQTMLSLAKEGTSQLLEKQNAVLND 238

Query: 241 EV 242
           E+
Sbjct: 239 EL 240


>gi|311069329|ref|YP_003974252.1| ribonuclease PH [Bacillus atrophaeus 1942]
 gi|310869846|gb|ADP33321.1| ribonuclease PH [Bacillus atrophaeus 1942]
          Length = 245

 Score =  336 bits (863), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 110/241 (45%), Positives = 155/241 (64%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GRQ +++R I+       + EGS L+  G+T ++  A++E++VP ++R    GWIT
Sbjct: 1   MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGEGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL  LG R I IDCDVIQ
Sbjct: 61  AEYSMLPRATNQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA++A+   +  +            +   +AAIS G+      ++DL+Y
Sbjct: 121 ADGGTRTASITGAFLAMGIAIGKLVKSG--VLKKTPVTDFLAAISVGIDKEQGLLLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  +VD N +MT SG  VE+QG+ E ATFS++    +L+LA+  I +LI  QK V+ 
Sbjct: 179 TEDSAAEVDMNVIMTGSGRFVELQGTGEEATFSREDLDGLLSLAEKGIQELIDKQKAVLG 238

Query: 240 N 240
           +
Sbjct: 239 D 239


>gi|147677126|ref|YP_001211341.1| ribonuclease PH [Pelotomaculum thermopropionicum SI]
 gi|146273223|dbj|BAF58972.1| RNase PH [Pelotomaculum thermopropionicum SI]
          Length = 257

 Score =  336 bits (863), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 124/235 (52%), Positives = 166/235 (70%), Gaps = 2/235 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R + +TR   K+AEGS L++ GDT ++ TAT+E+KVP++++    GWITA
Sbjct: 3   RIDGRKPDQLRPVRITRNYIKHAEGSVLIEIGDTRVICTATVEDKVPLFLKGEGKGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R  REA  G+ GGR+ EIQR+IGR+LRSVVDL+ALG R + +DCDVIQA
Sbjct: 63  EYGMLPRSTGVRTPREAARGKIGGRTCEIQRLIGRSLRSVVDLAALGERTVWLDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D L  +++     ++   +   VAA S G L G   +DL Y E
Sbjct: 123 DGGTRTASITGAFVALVDALNRLKEQGQIDRI--PVSDFVAATSVGRLNGRIYLDLCYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           DS  +VD N VMT SG  VEVQG+ E A+F++    +M+ LA   I+ LI  QK+
Sbjct: 181 DSAAEVDMNIVMTGSGRFVEVQGTGEEASFTRQEMDSMIELAAQGISRLILHQKE 235


>gi|15804184|ref|NP_290223.1| ribonuclease PH [Escherichia coli O157:H7 EDL933]
 gi|15833772|ref|NP_312545.1| ribonuclease PH [Escherichia coli O157:H7 str. Sakai]
 gi|74314123|ref|YP_312542.1| ribonuclease PH [Shigella sonnei Ss046]
 gi|82546006|ref|YP_409953.1| ribonuclease PH [Shigella boydii Sb227]
 gi|117625915|ref|YP_859238.1| ribonuclease PH [Escherichia coli APEC O1]
 gi|157158506|ref|YP_001465123.1| ribonuclease PH [Escherichia coli E24377A]
 gi|161486067|ref|NP_756329.2| ribonuclease PH [Escherichia coli CFT073]
 gi|162138338|ref|YP_543146.2| ribonuclease PH [Escherichia coli UTI89]
 gi|168748709|ref|ZP_02773731.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4113]
 gi|168753467|ref|ZP_02778474.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4401]
 gi|168759740|ref|ZP_02784747.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4501]
 gi|168766063|ref|ZP_02791070.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4486]
 gi|168772391|ref|ZP_02797398.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4196]
 gi|168779798|ref|ZP_02804805.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4076]
 gi|168785519|ref|ZP_02810526.1| ribonuclease PH [Escherichia coli O157:H7 str. EC869]
 gi|168798588|ref|ZP_02823595.1| ribonuclease PH [Escherichia coli O157:H7 str. EC508]
 gi|170680501|ref|YP_001745943.1| ribonuclease PH [Escherichia coli SMS-3-5]
 gi|187733771|ref|YP_001882340.1| ribonuclease PH [Shigella boydii CDC 3083-94]
 gi|191167816|ref|ZP_03029622.1| ribonuclease PH [Escherichia coli B7A]
 gi|193063848|ref|ZP_03044935.1| ribonuclease PH [Escherichia coli E22]
 gi|193070385|ref|ZP_03051327.1| ribonuclease PH [Escherichia coli E110019]
 gi|194430060|ref|ZP_03062565.1| ribonuclease PH [Escherichia coli B171]
 gi|194431006|ref|ZP_03063299.1| ribonuclease PH [Shigella dysenteriae 1012]
 gi|195936204|ref|ZP_03081586.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4024]
 gi|208807479|ref|ZP_03249816.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4206]
 gi|208812475|ref|ZP_03253804.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4045]
 gi|208819811|ref|ZP_03260131.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4042]
 gi|209399306|ref|YP_002273121.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4115]
 gi|209921114|ref|YP_002295198.1| ribonuclease PH [Escherichia coli SE11]
 gi|217324320|ref|ZP_03440404.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14588]
 gi|227883811|ref|ZP_04001616.1| ribonuclease PH [Escherichia coli 83972]
 gi|237703414|ref|ZP_04533895.1| ribonuclease PH [Escherichia sp. 3_2_53FAA]
 gi|254795598|ref|YP_003080435.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14359]
 gi|256021353|ref|ZP_05435218.1| ribonuclease PH [Shigella sp. D9]
 gi|256025627|ref|ZP_05439492.1| ribonuclease PH [Escherichia sp. 4_1_40B]
 gi|260846592|ref|YP_003224370.1| ribonuclease PH [Escherichia coli O103:H2 str. 12009]
 gi|261224174|ref|ZP_05938455.1| ribonuclease PH [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254784|ref|ZP_05947317.1| ribonuclease PH [Escherichia coli O157:H7 str. FRIK966]
 gi|291285014|ref|YP_003501832.1| Ribonuclease PH [Escherichia coli O55:H7 str. CB9615]
 gi|293407266|ref|ZP_06651190.1| rph [Escherichia coli FVEC1412]
 gi|293413077|ref|ZP_06655745.1| ribonuclease PH [Escherichia coli B354]
 gi|293417104|ref|ZP_06659731.1| ribonuclease PH [Escherichia coli B185]
 gi|293463967|ref|ZP_06664381.1| ribonuclease PH [Escherichia coli B088]
 gi|298383012|ref|ZP_06992607.1| ribonuclease PH [Escherichia coli FVEC1302]
 gi|300815118|ref|ZP_07095343.1| ribonuclease PH [Escherichia coli MS 107-1]
 gi|300822413|ref|ZP_07102553.1| ribonuclease PH [Escherichia coli MS 119-7]
 gi|300898578|ref|ZP_07116908.1| ribonuclease PH [Escherichia coli MS 198-1]
 gi|300919790|ref|ZP_07136265.1| ribonuclease PH [Escherichia coli MS 115-1]
 gi|300939243|ref|ZP_07153922.1| ribonuclease PH [Escherichia coli MS 21-1]
 gi|300948023|ref|ZP_07162164.1| ribonuclease PH [Escherichia coli MS 116-1]
 gi|300954463|ref|ZP_07166913.1| ribonuclease PH [Escherichia coli MS 175-1]
 gi|300984904|ref|ZP_07177192.1| ribonuclease PH [Escherichia coli MS 45-1]
 gi|301018972|ref|ZP_07183195.1| ribonuclease PH [Escherichia coli MS 69-1]
 gi|301028402|ref|ZP_07191648.1| ribonuclease PH [Escherichia coli MS 196-1]
 gi|301047433|ref|ZP_07194512.1| ribonuclease PH [Escherichia coli MS 185-1]
 gi|301644309|ref|ZP_07244311.1| ribonuclease PH [Escherichia coli MS 146-1]
 gi|307140341|ref|ZP_07499697.1| ribonuclease PH [Escherichia coli H736]
 gi|307314272|ref|ZP_07593880.1| ribonuclease PH [Escherichia coli W]
 gi|309797616|ref|ZP_07692004.1| ribonuclease PH [Escherichia coli MS 145-7]
 gi|331644361|ref|ZP_08345490.1| tRNA nucleotidyltransferase [Escherichia coli H736]
 gi|331649458|ref|ZP_08350544.1| tRNA nucleotidyltransferase [Escherichia coli M605]
 gi|331655275|ref|ZP_08356274.1| tRNA nucleotidyltransferase [Escherichia coli M718]
 gi|331659963|ref|ZP_08360901.1| tRNA nucleotidyltransferase [Escherichia coli TA206]
 gi|331665268|ref|ZP_08366169.1| tRNA nucleotidyltransferase [Escherichia coli TA143]
 gi|331670483|ref|ZP_08371322.1| tRNA nucleotidyltransferase [Escherichia coli TA271]
 gi|331675122|ref|ZP_08375879.1| tRNA nucleotidyltransferase [Escherichia coli TA280]
 gi|331679734|ref|ZP_08380404.1| tRNA nucleotidyltransferase [Escherichia coli H591]
 gi|331685306|ref|ZP_08385892.1| tRNA nucleotidyltransferase [Escherichia coli H299]
 gi|332282587|ref|ZP_08395000.1| ribonuclease PH [Shigella sp. D9]
 gi|54039263|sp|P66680|RNPH_ECO57 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|54042177|sp|P66679|RNPH_ECOL6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123558299|sp|Q31UY3|RNPH_SHIBS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123615832|sp|Q3YW05|RNPH_SHISS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228279|sp|A1AHH4|RNPH_ECOK1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166991083|sp|A7ZTJ4|RNPH_ECO24 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736905|sp|B5YWE1|RNPH_ECO5E RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736906|sp|B6I3M0|RNPH_ECOSE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736907|sp|B1LK80|RNPH_ECOSM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736941|sp|B2TTV7|RNPH_SHIB3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|12518399|gb|AAG58787.1|AE005591_11 RNase PH [Escherichia coli O157:H7 str. EDL933]
 gi|13363993|dbj|BAB37941.1| RNase PH [Escherichia coli O157:H7 str. Sakai]
 gi|73857600|gb|AAZ90307.1| RNase PH [Shigella sonnei Ss046]
 gi|81247417|gb|ABB68125.1| RNase PH [Shigella boydii Sb227]
 gi|115515039|gb|ABJ03114.1| ribonuclease PH [Escherichia coli APEC O1]
 gi|157080536|gb|ABV20244.1| ribonuclease PH [Escherichia coli E24377A]
 gi|170518219|gb|ACB16397.1| ribonuclease PH [Escherichia coli SMS-3-5]
 gi|187430763|gb|ACD10037.1| ribonuclease PH [Shigella boydii CDC 3083-94]
 gi|187771578|gb|EDU35422.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4196]
 gi|188016889|gb|EDU55011.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4113]
 gi|189002636|gb|EDU71622.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4076]
 gi|189359228|gb|EDU77647.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4401]
 gi|189364689|gb|EDU83108.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4486]
 gi|189369513|gb|EDU87929.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4501]
 gi|189374286|gb|EDU92702.1| ribonuclease PH [Escherichia coli O157:H7 str. EC869]
 gi|189378769|gb|EDU97185.1| ribonuclease PH [Escherichia coli O157:H7 str. EC508]
 gi|190902159|gb|EDV61902.1| ribonuclease PH [Escherichia coli B7A]
 gi|192930563|gb|EDV83170.1| ribonuclease PH [Escherichia coli E22]
 gi|192956324|gb|EDV86785.1| ribonuclease PH [Escherichia coli E110019]
 gi|194411887|gb|EDX28204.1| ribonuclease PH [Escherichia coli B171]
 gi|194420461|gb|EDX36537.1| ribonuclease PH [Shigella dysenteriae 1012]
 gi|208727280|gb|EDZ76881.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4206]
 gi|208733752|gb|EDZ82439.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4045]
 gi|208739934|gb|EDZ87616.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4042]
 gi|209160706|gb|ACI38139.1| ribonuclease PH [Escherichia coli O157:H7 str. EC4115]
 gi|209754598|gb|ACI75606.1| RNase PH [Escherichia coli]
 gi|209754600|gb|ACI75607.1| RNase PH [Escherichia coli]
 gi|209754602|gb|ACI75608.1| RNase PH [Escherichia coli]
 gi|209754604|gb|ACI75609.1| RNase PH [Escherichia coli]
 gi|209754606|gb|ACI75610.1| RNase PH [Escherichia coli]
 gi|209914373|dbj|BAG79447.1| ribonuclease PH [Escherichia coli SE11]
 gi|217320541|gb|EEC28965.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14588]
 gi|222035351|emb|CAP78096.1| ribonuclease PH [Escherichia coli LF82]
 gi|226902678|gb|EEH88937.1| ribonuclease PH [Escherichia sp. 3_2_53FAA]
 gi|227839089|gb|EEJ49555.1| ribonuclease PH [Escherichia coli 83972]
 gi|254594998|gb|ACT74359.1| ribonuclease PH [Escherichia coli O157:H7 str. TW14359]
 gi|257761739|dbj|BAI33236.1| ribonuclease PH [Escherichia coli O103:H2 str. 12009]
 gi|281180689|dbj|BAI57019.1| ribonuclease PH [Escherichia coli SE15]
 gi|284923676|emb|CBG36773.1| ribonuclease PH [Escherichia coli 042]
 gi|290764887|gb|ADD58848.1| Ribonuclease PH [Escherichia coli O55:H7 str. CB9615]
 gi|291321599|gb|EFE61035.1| ribonuclease PH [Escherichia coli B088]
 gi|291426077|gb|EFE99111.1| rph [Escherichia coli FVEC1412]
 gi|291431135|gb|EFF04128.1| ribonuclease PH [Escherichia coli B185]
 gi|291468724|gb|EFF11217.1| ribonuclease PH [Escherichia coli B354]
 gi|294492761|gb|ADE91517.1| ribonuclease PH [Escherichia coli IHE3034]
 gi|298276848|gb|EFI18366.1| ribonuclease PH [Escherichia coli FVEC1302]
 gi|299878513|gb|EFI86724.1| ribonuclease PH [Escherichia coli MS 196-1]
 gi|300300641|gb|EFJ57026.1| ribonuclease PH [Escherichia coli MS 185-1]
 gi|300318542|gb|EFJ68326.1| ribonuclease PH [Escherichia coli MS 175-1]
 gi|300357741|gb|EFJ73611.1| ribonuclease PH [Escherichia coli MS 198-1]
 gi|300399466|gb|EFJ83004.1| ribonuclease PH [Escherichia coli MS 69-1]
 gi|300408333|gb|EFJ91871.1| ribonuclease PH [Escherichia coli MS 45-1]
 gi|300413143|gb|EFJ96453.1| ribonuclease PH [Escherichia coli MS 115-1]
 gi|300452418|gb|EFK16038.1| ribonuclease PH [Escherichia coli MS 116-1]
 gi|300455842|gb|EFK19335.1| ribonuclease PH [Escherichia coli MS 21-1]
 gi|300525060|gb|EFK46129.1| ribonuclease PH [Escherichia coli MS 119-7]
 gi|300532010|gb|EFK53072.1| ribonuclease PH [Escherichia coli MS 107-1]
 gi|301077347|gb|EFK92153.1| ribonuclease PH [Escherichia coli MS 146-1]
 gi|306906095|gb|EFN36614.1| ribonuclease PH [Escherichia coli W]
 gi|307555742|gb|ADN48517.1| ribonuclease PH [Escherichia coli ABU 83972]
 gi|307628716|gb|ADN73020.1| ribonuclease PH [Escherichia coli UM146]
 gi|308118803|gb|EFO56065.1| ribonuclease PH [Escherichia coli MS 145-7]
 gi|312948204|gb|ADR29031.1| ribonuclease PH [Escherichia coli O83:H1 str. NRG 857C]
 gi|315062931|gb|ADT77258.1| ribonuclease PH [Escherichia coli W]
 gi|315285457|gb|EFU44902.1| ribonuclease PH [Escherichia coli MS 110-3]
 gi|315296969|gb|EFU56249.1| ribonuclease PH [Escherichia coli MS 16-3]
 gi|315618654|gb|EFU99240.1| ribonuclease PH [Escherichia coli 3431]
 gi|320176298|gb|EFW51358.1| Ribonuclease PH [Shigella dysenteriae CDC 74-1112]
 gi|320179979|gb|EFW54921.1| Ribonuclease PH [Shigella boydii ATCC 9905]
 gi|320186817|gb|EFW61537.1| Ribonuclease PH [Shigella flexneri CDC 796-83]
 gi|320191306|gb|EFW65956.1| Ribonuclease PH [Escherichia coli O157:H7 str. EC1212]
 gi|320193850|gb|EFW68483.1| Ribonuclease PH [Escherichia coli WV_060327]
 gi|320639550|gb|EFX09158.1| ribonuclease PH [Escherichia coli O157:H7 str. G5101]
 gi|320644989|gb|EFX14019.1| ribonuclease PH [Escherichia coli O157:H- str. 493-89]
 gi|320650256|gb|EFX18745.1| ribonuclease PH [Escherichia coli O157:H- str. H 2687]
 gi|320661342|gb|EFX28766.1| ribonuclease PH [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666356|gb|EFX33355.1| ribonuclease PH [Escherichia coli O157:H7 str. LSU-61]
 gi|323160749|gb|EFZ46685.1| ribonuclease PH [Escherichia coli E128010]
 gi|323166871|gb|EFZ52610.1| ribonuclease PH [Shigella sonnei 53G]
 gi|323182671|gb|EFZ68074.1| ribonuclease PH [Escherichia coli 1357]
 gi|323189449|gb|EFZ74730.1| ribonuclease PH [Escherichia coli RN587/1]
 gi|323376476|gb|ADX48744.1| ribonuclease PH [Escherichia coli KO11]
 gi|323934812|gb|EGB31194.1| ribonuclease PH [Escherichia coli E1520]
 gi|323939598|gb|EGB35804.1| ribonuclease PH [Escherichia coli E482]
 gi|323949882|gb|EGB45766.1| ribonuclease PH [Escherichia coli H252]
 gi|323954817|gb|EGB50597.1| ribonuclease PH [Escherichia coli H263]
 gi|324008099|gb|EGB77318.1| ribonuclease PH [Escherichia coli MS 57-2]
 gi|324019680|gb|EGB88899.1| ribonuclease PH [Escherichia coli MS 117-3]
 gi|324111538|gb|EGC05519.1| ribonuclease PH [Escherichia fergusonii B253]
 gi|324116018|gb|EGC09944.1| ribonuclease PH [Escherichia coli E1167]
 gi|326337358|gb|EGD61193.1| Ribonuclease PH [Escherichia coli O157:H7 str. 1044]
 gi|326339883|gb|EGD63690.1| Ribonuclease PH [Escherichia coli O157:H7 str. 1125]
 gi|330909705|gb|EGH38219.1| ribonuclease PH [Escherichia coli AA86]
 gi|331036655|gb|EGI08881.1| tRNA nucleotidyltransferase [Escherichia coli H736]
 gi|331041956|gb|EGI14100.1| tRNA nucleotidyltransferase [Escherichia coli M605]
 gi|331047290|gb|EGI19368.1| tRNA nucleotidyltransferase [Escherichia coli M718]
 gi|331053178|gb|EGI25211.1| tRNA nucleotidyltransferase [Escherichia coli TA206]
 gi|331057778|gb|EGI29764.1| tRNA nucleotidyltransferase [Escherichia coli TA143]
 gi|331062545|gb|EGI34465.1| tRNA nucleotidyltransferase [Escherichia coli TA271]
 gi|331068031|gb|EGI39429.1| tRNA nucleotidyltransferase [Escherichia coli TA280]
 gi|331072906|gb|EGI44231.1| tRNA nucleotidyltransferase [Escherichia coli H591]
 gi|331077677|gb|EGI48889.1| tRNA nucleotidyltransferase [Escherichia coli H299]
 gi|332084483|gb|EGI89678.1| ribonuclease PH [Shigella dysenteriae 155-74]
 gi|332084823|gb|EGI90006.1| ribonuclease PH [Shigella boydii 5216-82]
 gi|332089330|gb|EGI94434.1| ribonuclease PH [Shigella boydii 3594-74]
 gi|332104939|gb|EGJ08285.1| ribonuclease PH [Shigella sp. D9]
          Length = 238

 Score =  336 bits (863), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 126/240 (52%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D LQ + +  N    +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALQKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238


>gi|294791355|ref|ZP_06756512.1| tRNA nucleotidyltransferase [Scardovia inopinata F0304]
 gi|294457826|gb|EFG26180.1| tRNA nucleotidyltransferase [Scardovia inopinata F0304]
          Length = 259

 Score =  336 bits (863), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 111/242 (45%), Positives = 157/242 (64%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q+R +++TR  ++  EGS L++ G T +L TAT  + VP W +++  GW+T
Sbjct: 17  IRADGRAVDQLRPVTITRGWTQAPEGSVLIECGQTRVLCTATFSQGVPRWRKDSGLGWVT 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T +R  RE+V G+ GGR+ EI R+IGR LR +VDL ALG   I IDCDV+Q
Sbjct: 77  AEYAMIPRATADRTDRESVRGKIGGRTHEISRLIGRVLRGIVDLGALGENMIQIDCDVLQ 136

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D +   +         +VL   V+A+S G++ G P++DL Y 
Sbjct: 137 ADGGTRTASITGAYVALADAVSWAKKNKKIKAAKRVLLDQVSAVSVGIINGTPMLDLPYT 196

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS    D N  MT SG  +E+QG+AE   FS+D    +L+LA+     L +LQK  +  
Sbjct: 197 EDSQAMTDMNVAMTASGKFIEIQGTAEHRPFSRDELNTLLDLAQKGNTQLQELQKQALKK 256

Query: 241 EV 242
           E+
Sbjct: 257 EI 258


>gi|77165901|ref|YP_344426.1| ribonuclease PH [Nitrosococcus oceani ATCC 19707]
 gi|123593634|sp|Q3J8F0|RNPH_NITOC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|76884215|gb|ABA58896.1| RNAse PH [Nitrosococcus oceani ATCC 19707]
          Length = 239

 Score =  336 bits (863), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 123/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +++R I  TR  ++YAEGS LV+FG+T ++  A++E+++P +++ T  GWIT
Sbjct: 1   MRPSGRAPHELRPIHFTRHYTRYAEGSVLVEFGNTRVICNASVEDRIPRFLKGTGRGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST NR+ REA  GRQGGR+ EIQR IGRALR+VVDL+ALG   + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHNRMGREAAQGRQGGRTLEIQRFIGRALRAVVDLAALGEVTVTLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VAL D +        +      + G +A+IS G+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGSYVALVDAIN--NRLKKRIITHSPIHGQLASISVGIYEGTPVLDLDYR 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDST + D N VM ++G  +E+QG+AE   F  +   AML+LAK  I  L+  Q +V++ 
Sbjct: 179 EDSTAETDMNVVMNEAGAFIEIQGTAEGHAFRMNELQAMLDLAKSGINTLLAQQTEVLAK 238


>gi|332978052|gb|EGK14790.1| tRNA nucleotidyltransferase [Desmospora sp. 8437]
          Length = 289

 Score =  336 bits (863), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 113/238 (47%), Positives = 157/238 (65%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GRQ N++R++ +     K+AEGS L+  GDT ++ TA++EE+VP ++R +  GW+T
Sbjct: 31  LRVDGRQYNELRKVEMISDYIKHAEGSVLMCVGDTKVICTASVEERVPPFLRGSGKGWVT 90

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  RE+  G+ GGR+ EIQR+IGR+LRSV+ L  LG R I +DCDVIQ
Sbjct: 91  AEYSMLPRATQSRTIRESSKGKVGGRTMEIQRLIGRSLRSVIQLDRLGERTIWLDCDVIQ 150

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA    +  +         S  +   +AA S G++ G P +DL Y 
Sbjct: 151 ADGGTRTASITGAFVAAAQAIHGLVKSGAL--DSVPITDFLAATSVGIVDGQPCLDLCYE 208

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS   VD N VMT SG  VE+QG+ E + F+ +    +L LA      LI+LQKDV+
Sbjct: 209 EDSKAKVDMNVVMTGSGKYVEIQGTGEESPFTPEELHQLLALAGHGTEQLIRLQKDVL 266


>gi|332529685|ref|ZP_08405639.1| ribonuclease ph [Hylemonella gracilis ATCC 19624]
 gi|332040706|gb|EGI77078.1| ribonuclease ph [Hylemonella gracilis ATCC 19624]
          Length = 254

 Score =  336 bits (863), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 119/243 (48%), Positives = 163/243 (67%), Gaps = 6/243 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R  +Q+R + +TR  + +AEGS L++FG T +L TA++EE+VP   + +  GW+T
Sbjct: 13  LRADQRAADQLRAVRITRHYTVHAEGSVLIEFGRTRVLCTASVEERVPPHKKGSGEGWVT 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR+V DL ALG R I +DCDV+Q
Sbjct: 73  AEYGMLPRSTHTRSDREAARGKQNGRTQEIQRLIGRSLRAVFDLKALGERTITLDCDVLQ 132

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVA  D +  +   +     +  +   VAA+S G++ G  ++DL+Y 
Sbjct: 133 ADGGTRTAAITGAWVAAQDAVNTL--IAQGKLTTSPIIAPVAAVSVGIVEGQALLDLEYT 190

Query: 181 EDSTIDVDANFVMT----DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           EDS  D D N VMT      GH +EVQG+AE A FS+    A+L LA+  I +L+ LQ+ 
Sbjct: 191 EDSACDTDMNVVMTVNAAGEGHYIEVQGTAEGAAFSRKEMDALLALAEKGIHELVALQRQ 250

Query: 237 VIS 239
            ++
Sbjct: 251 ALA 253


>gi|210621777|ref|ZP_03292806.1| hypothetical protein CLOHIR_00751 [Clostridium hiranonis DSM 13275]
 gi|210154541|gb|EEA85547.1| hypothetical protein CLOHIR_00751 [Clostridium hiranonis DSM 13275]
          Length = 449

 Score =  336 bits (863), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 116/237 (48%), Positives = 157/237 (66%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL  R  +++R + +T   +KYA GS L++ G+T ++ TAT+E+KVP ++RNT  GWI A
Sbjct: 3   RLGNRANDEIRPVKITTNFTKYAAGSVLIEMGETKVICTATVEDKVPPFLRNTGTGWINA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R  R++V G+  GR+QEIQR+IGRA+RSV++L  LG R I +DCDVIQA
Sbjct: 63  EYSMLPSSTQQRKIRDSVRGKIDGRTQEIQRLIGRAIRSVIELDLLGERTIWVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITG +VA    +  +       +L   +K  V+AIS G+L    I+DL Y E
Sbjct: 123 DGGTRTASITGGFVAAAQAIYGLYQNKEIKKL--PIKNFVSAISAGVLNDEHILDLCYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS   VD NFVMTD G  VEVQG+ E A FS++    +L L +    +LIK+Q+  I
Sbjct: 181 DSAAKVDMNFVMTDKGEFVEVQGTGEEAPFSREDLNKLLELGEKGNKELIKIQRAAI 237


>gi|91205422|ref|YP_537777.1| ribonuclease PH [Rickettsia bellii RML369-C]
 gi|122425711|sp|Q1RIX6|RNPH_RICBR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|91068966|gb|ABE04688.1| Ribonuclease PH [Rickettsia bellii RML369-C]
          Length = 239

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 129/240 (53%), Positives = 169/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ NQ+R ISL       AEGSCL+K G+TH++ +A+ +  VP ++RN   GWIT
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSASYDTTVPPFLRNQNRGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP ST  R KREAV G+Q GR+QEIQR+IGR +RS++DL  LG RQI IDCDVI 
Sbjct: 61  AEYSMLPGSTSQRNKREAVQGKQSGRTQEIQRLIGRTMRSIIDLQKLGERQITIDCDVIN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VALH  ++ +     +      L   VAA+SCG+    PI+DLDY 
Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSLMK--KRILKVNPLINQVAAVSCGIYKDQPILDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  +VD+NFV   +G+++E+QG+AE+  FS++ F  ML LAK  +A+L KLQ  V+ N
Sbjct: 179 EDSDAEVDSNFVFAGNGNLIEIQGTAEKKPFSEEQFLEMLKLAKAGVAELFKLQNQVLLN 238


>gi|312113394|ref|YP_004010990.1| ribonuclease PH [Rhodomicrobium vannielii ATCC 17100]
 gi|311218523|gb|ADP69891.1| ribonuclease PH [Rhodomicrobium vannielii ATCC 17100]
          Length = 237

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 136/235 (57%), Positives = 174/235 (74%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S RQ   +R +S  R  S +AEGSCL+KFG+TH+L TA+LE++VP W++    GWIT
Sbjct: 1   MRPSKRQAGDLRPVSFQRAFSHHAEGSCLIKFGNTHVLCTASLEDRVPPWLKGQGRGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G Q GRSQEIQR+IGR+LR+VVDL ALG RQI++DCDV+Q
Sbjct: 61  AEYGMLPRATSDRTRREATTGHQSGRSQEIQRLIGRSLRAVVDLQALGERQIMVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVALHDC Q M   +      + +K +VAAISCG+  G  ++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALHDCFQWMR--ARDMLRGEPMKDNVAAISCGIYKGEAVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  + DANFV T  G IVE+Q +AE+  FS++    +  LAK  IA+L+ LQK
Sbjct: 179 EDSDAEADANFVFTGKGQIVEIQATAEKGAFSEERMAELTALAKKGIAELVNLQK 233


>gi|295836838|ref|ZP_06823771.1| tRNA nucleotidyltransferase [Streptomyces sp. SPB74]
 gi|197697479|gb|EDY44412.1| tRNA nucleotidyltransferase [Streptomyces sp. SPB74]
          Length = 241

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 114/238 (47%), Positives = 154/238 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R +S+ R  SK+AEGS LV FGDT +L TA+  E VP W + +  GW+TA
Sbjct: 3   RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+VVD  ALG   +++DCDV+QA
Sbjct: 63  EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDTRALGENTVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D ++  +           L+  V+A+S G++   P +DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGIIDSVPYLDLRYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   + D N V T  G  VEVQG+AE A F +    A+L+LA     DL  LQ++ + 
Sbjct: 183 DVRAETDMNVVRTGDGRFVEVQGTAEAAPFDRAELDALLDLASAGCTDLAALQREALE 240


>gi|254559085|ref|YP_003066180.1| ribonuclease PH [Methylobacterium extorquens DM4]
 gi|254266363|emb|CAX22127.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Methylobacterium extorquens DM4]
          Length = 237

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 136/239 (56%), Positives = 174/239 (72%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  + MR+++L R V++YAEGSCLV FG+T +L TA+LEE+ P W+R +  GW+T
Sbjct: 1   MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASLEERGPPWLRGSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE  SG+  GR+QEIQR+IGR+LR+V +L ALG RQI +DCDVIQ
Sbjct: 61  AEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVALHDC   M   +        LK HVAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALHDCFAWMR--ARSIISVDPLKDHVAAVSCGIYKGQPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D DANFV+T  G IVEVQG+AE   F+ + F  +L LAK  +A L++LQ+  I+
Sbjct: 179 EDSAADTDANFVVTGKGGIVEVQGTAEMEPFTDEQFLELLRLAKGGVAGLVELQRKAIA 237


>gi|254303318|ref|ZP_04970676.1| tRNA nucleotidyltransferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323510|gb|EDK88760.1| tRNA nucleotidyltransferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 434

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 110/241 (45%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ ++ R+I + + V+ YAEGS L++ G+T ++ TA++ +KVP ++R T  GW+T
Sbjct: 2   LREDGRKFDEERKIKIIKNVNIYAEGSVLIEVGNTKVICTASVSDKVPSFLRGTGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+IGRALR+ +DL  LG R I IDCDVIQ
Sbjct: 62  AEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG ++AL   ++ +     +      L  +VAAIS G +    +VDL Y 
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKL--LQEEILEENPLISNVAAISVGKIDSNLMVDLKYS 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  +VD N +M   G  +EVQG+ E +TF++     +L+LA++ I  LI+LQ  +I+ 
Sbjct: 180 EDSAAEVDMNVIMNKKGEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQDRIINQ 239

Query: 241 E 241
           E
Sbjct: 240 E 240


>gi|30065081|ref|NP_839252.1| ribonuclease PH [Shigella flexneri 2a str. 2457T]
 gi|56480393|ref|NP_709422.2| ribonuclease PH [Shigella flexneri 2a str. 301]
 gi|110807680|ref|YP_691200.1| ribonuclease PH [Shigella flexneri 5 str. 8401]
 gi|157163124|ref|YP_001460442.1| ribonuclease PH [Escherichia coli HS]
 gi|170018127|ref|YP_001723081.1| ribonuclease PH [Escherichia coli ATCC 8739]
 gi|194435850|ref|ZP_03067953.1| ribonuclease PH [Escherichia coli 101-1]
 gi|253771516|ref|YP_003034347.1| ribonuclease PH [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254163571|ref|YP_003046679.1| ribonuclease PH [Escherichia coli B str. REL606]
 gi|260857962|ref|YP_003231853.1| ribonuclease PH [Escherichia coli O26:H11 str. 11368]
 gi|260870373|ref|YP_003236775.1| ribonuclease PH [Escherichia coli O111:H- str. 11128]
 gi|297518127|ref|ZP_06936513.1| ribonuclease PH [Escherichia coli OP50]
 gi|300907685|ref|ZP_07125313.1| ribonuclease PH [Escherichia coli MS 84-1]
 gi|300923429|ref|ZP_07139469.1| ribonuclease PH [Escherichia coli MS 182-1]
 gi|300927927|ref|ZP_07143486.1| ribonuclease PH [Escherichia coli MS 187-1]
 gi|301303877|ref|ZP_07209996.1| ribonuclease PH [Escherichia coli MS 124-1]
 gi|301325325|ref|ZP_07218832.1| ribonuclease PH [Escherichia coli MS 78-1]
 gi|312972072|ref|ZP_07786246.1| ribonuclease PH [Escherichia coli 1827-70]
 gi|61216048|sp|Q83PN2|RNPH_SHIFL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123047760|sp|Q0SYH0|RNPH_SHIF8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166991084|sp|A8A6A5|RNPH_ECOHS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043762|sp|B1IYV7|RNPH_ECOLC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|30043342|gb|AAP19063.1| RNase PH [Shigella flexneri 2a str. 2457T]
 gi|56383944|gb|AAN45129.2| RNase PH [Shigella flexneri 2a str. 301]
 gi|110617228|gb|ABF05895.1| RNase PH [Shigella flexneri 5 str. 8401]
 gi|157068804|gb|ABV08059.1| ribonuclease PH [Escherichia coli HS]
 gi|169753055|gb|ACA75754.1| ribonuclease PH [Escherichia coli ATCC 8739]
 gi|194425393|gb|EDX41377.1| ribonuclease PH [Escherichia coli 101-1]
 gi|253322560|gb|ACT27162.1| ribonuclease PH [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975472|gb|ACT41143.1| ribonuclease PH [Escherichia coli B str. REL606]
 gi|253979628|gb|ACT45298.1| ribonuclease PH [Escherichia coli BL21(DE3)]
 gi|257756611|dbj|BAI28113.1| ribonuclease PH [Escherichia coli O26:H11 str. 11368]
 gi|257766729|dbj|BAI38224.1| ribonuclease PH [Escherichia coli O111:H- str. 11128]
 gi|281603006|gb|ADA75990.1| Ribonuclease PH [Shigella flexneri 2002017]
 gi|300400621|gb|EFJ84159.1| ribonuclease PH [Escherichia coli MS 84-1]
 gi|300420256|gb|EFK03567.1| ribonuclease PH [Escherichia coli MS 182-1]
 gi|300464019|gb|EFK27512.1| ribonuclease PH [Escherichia coli MS 187-1]
 gi|300840840|gb|EFK68600.1| ribonuclease PH [Escherichia coli MS 124-1]
 gi|300847852|gb|EFK75612.1| ribonuclease PH [Escherichia coli MS 78-1]
 gi|309704045|emb|CBJ03391.1| ribonuclease PH [Escherichia coli ETEC H10407]
 gi|310334449|gb|EFQ00654.1| ribonuclease PH [Escherichia coli 1827-70]
 gi|313647483|gb|EFS11933.1| ribonuclease PH [Shigella flexneri 2a str. 2457T]
 gi|313848787|emb|CAQ33969.2| rph [Escherichia coli BL21(DE3)]
 gi|315254030|gb|EFU33998.1| ribonuclease PH [Escherichia coli MS 85-1]
 gi|320201331|gb|EFW75912.1| Ribonuclease PH [Escherichia coli EC4100B]
 gi|323155294|gb|EFZ41477.1| ribonuclease PH [Escherichia coli EPECa14]
 gi|323173236|gb|EFZ58865.1| ribonuclease PH [Escherichia coli LT-68]
 gi|323179387|gb|EFZ64954.1| ribonuclease PH [Escherichia coli 1180]
 gi|323944096|gb|EGB40176.1| ribonuclease PH [Escherichia coli H120]
 gi|323959891|gb|EGB55539.1| ribonuclease PH [Escherichia coli H489]
 gi|323971285|gb|EGB66530.1| ribonuclease PH [Escherichia coli TA007]
 gi|332750601|gb|EGJ81009.1| ribonuclease PH [Shigella flexneri 4343-70]
 gi|332751354|gb|EGJ81757.1| ribonuclease PH [Shigella flexneri 2747-71]
 gi|332764155|gb|EGJ94392.1| ribonuclease PH [Shigella flexneri 2930-71]
 gi|332996132|gb|EGK15759.1| ribonuclease PH [Shigella flexneri VA-6]
 gi|332997420|gb|EGK17036.1| ribonuclease PH [Shigella flexneri K-218]
 gi|332997778|gb|EGK17389.1| ribonuclease PH [Shigella flexneri K-272]
 gi|333012908|gb|EGK32285.1| ribonuclease PH [Shigella flexneri K-304]
 gi|333013313|gb|EGK32685.1| ribonuclease PH [Shigella flexneri K-227]
          Length = 238

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 127/240 (52%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D LQ + +  N    +  +KG VAA+S G++ G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALQKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238


>gi|182677771|ref|YP_001831917.1| ribonuclease PH [Beijerinckia indica subsp. indica ATCC 9039]
 gi|226736889|sp|B2IH14|RNPH_BEII9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|182633654|gb|ACB94428.1| ribonuclease PH [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 237

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 137/239 (57%), Positives = 170/239 (71%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R    +R ++L R V++YAEGSCLVKFG TH+L TA+LE+K P W+R    GW+T
Sbjct: 1   MRPSKRAAQDLRPVTLERNVARYAEGSCLVKFGGTHVLCTASLEDKPPPWLRGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE++SG+  GR+QEIQR+IGR+LR+V +L ALG RQI +DCDV+Q
Sbjct: 61  AEYAMLPRATHTRTRRESMSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVALHDC + M            L+ HVAA+SCG+  G  ++DLDY 
Sbjct: 121 ADGGTRTAAITGAWVALHDCCKWMH--GRSIIKEFPLREHVAAVSCGIYQGEAVLDLDYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    DANFVMT  G +VEVQ SAE A FS+D    +L LAK  IA L+ +QK  I 
Sbjct: 179 EDSVAQTDANFVMTGGGALVEVQASAEGAVFSEDELSVLLALAKGGIAQLVNIQKLAIG 237


>gi|329847441|ref|ZP_08262469.1| ribonuclease PH [Asticcacaulis biprosthecum C19]
 gi|328842504|gb|EGF92073.1| ribonuclease PH [Asticcacaulis biprosthecum C19]
          Length = 250

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 124/239 (51%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R S R+ +QMR ++L   V++YAEGSCLV FG T +L TA++E  VP +++    GW+T
Sbjct: 13  IRPSNRKPDQMRNVTLETGVTRYAEGSCLVTFGHTRVLVTASVETGVPSFLKGKGQGWVT 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R +REA +G+Q GR+QEIQR+IGR++R+V+DL ALG RQI +DCDV+Q
Sbjct: 73  AEYGMLPRSTHTRSRREAATGKQSGRTQEIQRLIGRSMRAVIDLKALGERQITLDCDVLQ 132

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVAL      +   ++K      L   VAAISCG+    P++DLDY 
Sbjct: 133 ADGGTRTASITGAWVALAAACDKL--VADKIIEKSPLLDQVAAISCGIFEAVPVLDLDYD 190

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFV+T SGH VE+Q + E+  FS+  F  + +LA    ++L  LQ  V+ 
Sbjct: 191 EDSNAETDANFVITGSGHAVEIQATGEKRGFSRQEFDTLYDLALKGTSELFALQNQVLG 249


>gi|238902734|ref|YP_002928530.1| defective ribonuclease PH [Escherichia coli BW2952]
 gi|298351813|sp|P0CG18|RNPH_ECOBW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|238860742|gb|ACR62740.1| defective ribonuclease PH [Escherichia coli BW2952]
 gi|260447338|gb|ACX37760.1| ribonuclease PH [Escherichia coli DH1]
 gi|315138225|dbj|BAJ45384.1| ribonuclease PH [Escherichia coli DH1]
          Length = 238

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 126/240 (52%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D LQ + +  N    +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALQKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGGIESIVATQKAALAN 238


>gi|188495519|ref|ZP_03002789.1| ribonuclease PH [Escherichia coli 53638]
 gi|188490718|gb|EDU65821.1| ribonuclease PH [Escherichia coli 53638]
 gi|332345611|gb|AEE58945.1| ribonuclease PH [Escherichia coli UMNK88]
          Length = 238

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 126/240 (52%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D LQ + +  N    +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALQKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238


>gi|303241597|ref|ZP_07328096.1| ribonuclease PH [Acetivibrio cellulolyticus CD2]
 gi|302590817|gb|EFL60566.1| ribonuclease PH [Acetivibrio cellulolyticus CD2]
          Length = 282

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 117/240 (48%), Positives = 168/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR+++ +R++ +TR   K+AEGS L++ GDT ++ TA++++KVP + +N+  GW+T
Sbjct: 25  LRIDGREKSNLRKVKITRNYIKHAEGSVLIEMGDTKVICTASVDDKVPPFKKNSGEGWVT 84

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRSTG R +R+    +  GRSQEIQR+IGRALRSVV+  ALG R IIIDCDVIQ
Sbjct: 85  AEYSMLPRSTGVRNQRDISKLKLNGRSQEIQRLIGRALRSVVNFHALGERAIIIDCDVIQ 144

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA+ D  + + +  +       +   VAA+S G++    ++DL YG
Sbjct: 145 ADGGTRTASITGAFVAMVDACKKLVE--DGVIEKIPITDMVAAVSVGIIGDEEMLDLCYG 202

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VMT SG  +EVQ + E++ F +D    +L+LA+  I +LI +QKDV+  
Sbjct: 203 EDSNAVVDMNVVMTSSGEFIEVQATGEQSPFRRDQLNKLLDLAEVGIKELISIQKDVLGQ 262


>gi|228941669|ref|ZP_04104216.1| Ribonuclease PH [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228974596|ref|ZP_04135162.1| Ribonuclease PH [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228981191|ref|ZP_04141491.1| Ribonuclease PH [Bacillus thuringiensis Bt407]
 gi|228778391|gb|EEM26658.1| Ribonuclease PH [Bacillus thuringiensis Bt407]
 gi|228784999|gb|EEM33012.1| Ribonuclease PH [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228817881|gb|EEM63959.1| Ribonuclease PH [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326942277|gb|AEA18173.1| ribonuclease PH [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 245

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++     ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEKGIFQLIDIQKEALG 238

Query: 240 NEV 242
           + V
Sbjct: 239 DIV 241


>gi|291086420|ref|ZP_06355763.2| tRNA nucleotidyltransferase [Citrobacter youngae ATCC 29220]
 gi|291068205|gb|EFE06314.1| tRNA nucleotidyltransferase [Citrobacter youngae ATCC 29220]
          Length = 273

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 123/240 (51%), Positives = 162/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA+++E VP +++    GWIT
Sbjct: 36  MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWIT 95

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDVIQ
Sbjct: 96  AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 155

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +         +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 156 ADGGTRTASITGACVALADALNKLVASGKL--KTNPMKGMVAAVSVGIVNGEALCDLEYV 213

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   FS +    +L LA+  I  ++  QK  + N
Sbjct: 214 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 273


>gi|218528482|ref|YP_002419298.1| ribonuclease PH [Methylobacterium chloromethanicum CM4]
 gi|254808592|sp|B7L092|RNPH_METC4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|218520785|gb|ACK81370.1| ribonuclease PH [Methylobacterium chloromethanicum CM4]
          Length = 237

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 135/239 (56%), Positives = 174/239 (72%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  + MR+++L R V++YAEGSCLV FG+T +L TA+LEE+ P W+R +  GW+T
Sbjct: 1   MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASLEERGPPWLRGSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE  SG+  GR+QEIQR+IGR+LR+V +L ALG RQI +DCDVIQ
Sbjct: 61  AEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVALHDC   M   +        LK HVAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALHDCFAWMR--ARSIISVDPLKDHVAAVSCGIYKGQPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFV+T  G IVEVQG+AE   F+ + F  +L LAK  +A L++LQ+  I+
Sbjct: 179 EDSAAETDANFVVTGKGGIVEVQGTAELEPFTDEQFLELLRLAKGGVAGLVELQRKAIA 237


>gi|121587563|ref|ZP_01677329.1| ribonuclease PH [Vibrio cholerae 2740-80]
 gi|121548201|gb|EAX58271.1| ribonuclease PH [Vibrio cholerae 2740-80]
          Length = 229

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 119/230 (51%), Positives = 159/230 (69%), Gaps = 2/230 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R I +TR  + YAEGS LV+FG+T +L  A++EE VP W++    GW+T
Sbjct: 1   MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+QGGR+ EIQR+I R+LR+VVDL A+G   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D   H+   +        +KGHVAA+S G+L    + DL+Y 
Sbjct: 121 ADGGTRTASITGASVALADAFAHL--IAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           EDS  D D N VMT+ G ++E+QG+AE   FS +    +L +AK  IAD+
Sbjct: 179 EDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADM 228


>gi|65321848|ref|ZP_00394807.1| COG0689: RNase PH [Bacillus anthracis str. A2012]
          Length = 258

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 14  MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 74  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++     ++DL+Y
Sbjct: 134 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 191

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 192 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 251

Query: 240 NEV 242
           + V
Sbjct: 252 DIV 254


>gi|296134058|ref|YP_003641305.1| ribonuclease PH [Thermincola sp. JR]
 gi|296032636|gb|ADG83404.1| ribonuclease PH [Thermincola potens JR]
          Length = 239

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 117/239 (48%), Positives = 160/239 (66%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R + +TR   K+AEGS L++ GDT ++ TAT+E+KVP +++    GWITA
Sbjct: 3   RNDGRANDQLRPVKITRHYIKHAEGSVLIEMGDTKVICTATVEDKVPPFMKGEGKGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRS   R+ REA  G+ GGR+ EIQR+IGR+LR+VVDL ALG R + +DCDVIQA
Sbjct: 63  EYGMLPRSAATRIPREAAKGKIGGRTYEIQRLIGRSLRAVVDLEALGERTVTVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D L+H  D          +  ++AA+S G + G  ++DL + E
Sbjct: 123 DGGTRTASITGAFVALVDALRHQVD--QGVLEKFPVLDYMAAVSVGKVNGEILLDLAFSE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  +VD N VMT  G  +EVQG+AE + F ++     L +A   I  LI+ Q +V+  
Sbjct: 181 DSVAEVDMNVVMTRGGKFLEVQGTAEGSPFDREELEKFLEMAGKGIQQLIQAQMEVLGE 239


>gi|157373519|ref|YP_001472119.1| tRNA nucleotidyltransferase [Shewanella sediminis HAW-EB3]
 gi|189043777|sp|A8FQ68|RNPH_SHESH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157315893|gb|ABV34991.1| tRNA nucleotidyltransferase [Shewanella sediminis HAW-EB3]
          Length = 237

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 123/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q R +++TR+ + +AEGS LV+FGDT +L TA+ EE VP +++    GW+T
Sbjct: 1   MRPSDRTPAQSRPVTITRQFTAHAEGSVLVEFGDTKVLCTASFEEGVPRFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+Q GR+QEIQR+IGR+LR+ VD+ ALG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMNREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D L            +  LK  +AA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALVDSLNWAR--GKGILKTNPLKFLIAAVSVGIYKGEPICDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G ++E+QG+AE   FS +   ++L LAK  I +++ +QK  +S
Sbjct: 179 EDSEAETDMNVVMTETGKMIEIQGTAEGEPFSHEELLSLLELAKHGIREIVDIQKAALS 237


>gi|302521564|ref|ZP_07273906.1| ribonuclease PH [Streptomyces sp. SPB78]
 gi|302430459|gb|EFL02275.1| ribonuclease PH [Streptomyces sp. SPB78]
          Length = 241

 Score =  335 bits (861), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 115/239 (48%), Positives = 155/239 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R +S+ R  SK+AEGS LV FGDT +L TA+  E VP W + +  GW+TA
Sbjct: 3   RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+VVD  ALG   +++DCDV+QA
Sbjct: 63  EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDPRALGENTVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D ++  +           L+  V+A+S G++   P +DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGIVDSVPYLDLRYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   + D N V T  G  VEVQG+AE A F +    A+L+LA    ADL  LQ++ +  
Sbjct: 183 DVRAETDMNVVRTGDGRFVEVQGTAEAAPFDRAELDALLDLASAGCADLAALQREALEG 241


>gi|163849851|ref|YP_001637894.1| ribonuclease PH [Methylobacterium extorquens PA1]
 gi|240137077|ref|YP_002961546.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Methylobacterium extorquens AM1]
 gi|226736915|sp|A9VZR7|RNPH_METEP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|163661456|gb|ABY28823.1| ribonuclease PH [Methylobacterium extorquens PA1]
 gi|240007043|gb|ACS38269.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Methylobacterium extorquens AM1]
          Length = 237

 Score =  335 bits (861), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 135/239 (56%), Positives = 174/239 (72%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  + MR+++L R V++YAEGSCLV FG+T +L TA+LEE+ P W+R +  GW+T
Sbjct: 1   MRPSKRAADAMRDVTLERAVARYAEGSCLVTFGNTRVLCTASLEERGPPWLRGSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE  SG+  GR+QEIQR+IGR+LR+V +L ALG RQI +DCDVIQ
Sbjct: 61  AEYAMLPRATHERTRREVNSGKPSGRTQEIQRLIGRSLRAVTNLPALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVALHDC   M   +        LK HVAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVALHDCFAWMR--ARSIISVDPLKDHVAAVSCGIYKGQPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFV+T  G IVEVQG+AE   F+ + F  +L LAK  +A L++LQ+  I+
Sbjct: 179 EDSAAETDANFVVTGKGGIVEVQGTAEMEPFTDEQFLELLRLAKGGVAGLVELQRKAIA 237


>gi|82779134|ref|YP_405483.1| ribonuclease PH [Shigella dysenteriae Sd197]
 gi|309784379|ref|ZP_07679018.1| ribonuclease PH [Shigella dysenteriae 1617]
 gi|123561122|sp|Q329L3|RNPH_SHIDS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|81243282|gb|ABB63992.1| RNase PH [Shigella dysenteriae Sd197]
 gi|308927886|gb|EFP73354.1| ribonuclease PH [Shigella dysenteriae 1617]
          Length = 238

 Score =  335 bits (861), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 125/240 (52%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA +AL D LQ + +  N    +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACMALADALQKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 238


>gi|297571668|ref|YP_003697442.1| ribonuclease PH [Arcanobacterium haemolyticum DSM 20595]
 gi|296932015|gb|ADH92823.1| ribonuclease PH [Arcanobacterium haemolyticum DSM 20595]
          Length = 246

 Score =  335 bits (861), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 110/240 (45%), Positives = 153/240 (63%), Gaps = 2/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  N++R + +TR      EGS LV+FG+T +L  A+  E VP W +++  GW+T 
Sbjct: 6   RADGRATNELRPVKITRNFLDAGEGSVLVEFGNTKVLCVASFTEGVPRWRKDSGLGWVTG 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R +RE+V G+  GR+QEI R++GRALR+VVD+SALG   I++DCDV+QA
Sbjct: 66  EYSMLPRATSTRNQRESVKGKVSGRTQEISRLVGRALRAVVDMSALGDNTIVLDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS--QVLKGHVAAISCGMLCGYPIVDLDY 179
           DGGTRTA+ITGA+VAL D +    +  +    +   VL+  VAAIS G++ G P +DL Y
Sbjct: 126 DGGTRTASITGAYVALADAVAWGIERGHIKPRAGKPVLRDSVAAISVGIIDGVPCLDLPY 185

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED   + D N VMT +G  +EVQG+AE   F +     +L+LA     +L   Q D + 
Sbjct: 186 EEDVRAETDMNVVMTGTGKFIEVQGTAEGEPFDRTELGQLLDLATAGCQELTSKQNDALG 245


>gi|157827025|ref|YP_001496089.1| ribonuclease PH [Rickettsia bellii OSU 85-389]
 gi|166228311|sp|A8GW25|RNPH_RICB8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157802329|gb|ABV79052.1| ribonuclease PH [Rickettsia bellii OSU 85-389]
          Length = 239

 Score =  335 bits (861), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 129/240 (53%), Positives = 169/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ NQ+R ISL       AEGSCL+K G+TH++ +A+ +  VP ++RN   GWIT
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSASYDTTVPPFLRNQNRGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP ST  R KREAV G+Q GR+QEIQR+IGR +RS++DL  LG RQI IDCDVI 
Sbjct: 61  AEYSMLPGSTSQRNKREAVQGKQSGRTQEIQRLIGRTMRSIIDLQKLGERQITIDCDVIN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VALH  ++ +     +      L   VAA+SCG+    PI+DLDY 
Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSLMK--ERILKVNPLINQVAAVSCGIYKDQPILDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  +VD+NFV   +G+++E+QG+AE+  FS++ F  ML LAK  +A+L KLQ  V+ N
Sbjct: 179 EDSDAEVDSNFVFAGNGNLIEIQGTAEKKPFSEEQFLEMLKLAKAGVAELFKLQNQVLLN 238


>gi|194367042|ref|YP_002029652.1| ribonuclease PH [Stenotrophomonas maltophilia R551-3]
 gi|226736943|sp|B4SU06|RNPH_STRM5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|194349846|gb|ACF52969.1| ribonuclease PH [Stenotrophomonas maltophilia R551-3]
          Length = 241

 Score =  335 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 119/238 (50%), Positives = 163/238 (68%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGRQ +Q+R + + R  +++AEGS LV FG+T +L TA++E +VP ++R    GW+TA
Sbjct: 5   RPSGRQPDQLRPVVIQRGFTRHAEGSVLVCFGETRVLCTASVENRVPGFLRGKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+QGGR+ EIQR+IGR+LR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRATHTRSDREAARGKQGGRTLEIQRLIGRSLRACVDRNALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +    +       + G VAA+S G+  G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALVDAVNVLMKRGDI--KRNPILGAVAAVSVGVYRGTPVLDLDYAE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  + +L+  Q+  +S
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLGLAEKGVRELLDAQQAALS 240


>gi|75760745|ref|ZP_00740767.1| Ribonuclease PH [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|218899648|ref|YP_002448059.1| ribonuclease PH [Bacillus cereus G9842]
 gi|228903010|ref|ZP_04067149.1| Ribonuclease PH [Bacillus thuringiensis IBL 4222]
 gi|228967584|ref|ZP_04128608.1| Ribonuclease PH [Bacillus thuringiensis serovar sotto str. T04001]
 gi|226736885|sp|B7IIZ1|RNPH_BACC2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|74491773|gb|EAO54967.1| Ribonuclease PH [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|218545068|gb|ACK97462.1| ribonuclease PH [Bacillus cereus G9842]
 gi|228792108|gb|EEM39686.1| Ribonuclease PH [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228856603|gb|EEN01124.1| Ribonuclease PH [Bacillus thuringiensis IBL 4222]
          Length = 245

 Score =  335 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++     ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEKGIFQLIDMQKEALG 238

Query: 240 NEV 242
           + V
Sbjct: 239 DIV 241


>gi|223365844|pdb|3DD6|A Chain A, Crystal Structure Of Rph, An Exoribonuclease From Bacillus
           Anthracis At 1.7 A Resolution
          Length = 255

 Score =  335 bits (860), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 11  MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 70

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 71  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++     ++DL+Y
Sbjct: 131 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 188

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 189 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 248

Query: 240 NEV 242
           + V
Sbjct: 249 DIV 251


>gi|332284454|ref|YP_004416365.1| ribonuclease PH [Pusillimonas sp. T7-7]
 gi|330428407|gb|AEC19741.1| ribonuclease PH [Pusillimonas sp. T7-7]
          Length = 271

 Score =  335 bits (860), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 117/238 (49%), Positives = 161/238 (67%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RLSGR  +++R + +    +++AEGS L+K GDTH+L  A++ EKVP +++    GW+TA
Sbjct: 36  RLSGRAASELRPVVIETGYTRHAEGSVLIKAGDTHVLCNASVLEKVPPFLKGKSQGWVTA 95

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR+V DL+ALG R + +DCDV+QA
Sbjct: 96  EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLTALGERTVQLDCDVLQA 155

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+ITGAWVA    ++ + +          L   VAA+S G++ G  ++DLDY E
Sbjct: 156 DGGTRCASITGAWVAAALAVRGLVE--QGVLAQSPLLDQVAAVSVGLVGGQALLDLDYTE 213

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS    D N VMT +GH VEVQG+AE  TF +     +L+LA+D I  L+  QK  ++
Sbjct: 214 DSGCGADMNIVMTGAGHFVEVQGTAEGQTFERKALDELLDLAQDGIRQLLAEQKRALA 271


>gi|229192693|ref|ZP_04319652.1| Ribonuclease PH [Bacillus cereus ATCC 10876]
 gi|228590783|gb|EEK48643.1| Ribonuclease PH [Bacillus cereus ATCC 10876]
          Length = 258

 Score =  335 bits (860), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 14  MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 74  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++     ++DL+Y
Sbjct: 134 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 191

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 192 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 251

Query: 240 NEV 242
           + V
Sbjct: 252 DIV 254


>gi|304407458|ref|ZP_07389110.1| ribonuclease PH [Paenibacillus curdlanolyticus YK9]
 gi|304343409|gb|EFM09251.1| ribonuclease PH [Paenibacillus curdlanolyticus YK9]
          Length = 248

 Score =  335 bits (860), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 120/240 (50%), Positives = 170/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+  Q+R I++   V+KYAEGS L+ FGDT +L TAT+E++VP +++    GW+T
Sbjct: 1   MRIDGREAAQLRSITIETGVNKYAEGSVLIAFGDTKVLVTATVEDRVPPFMKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R +REA  G+ GGR+ EIQR+IGRALRSVVDL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATQSRNQREAARGKLGGRTMEIQRLIGRALRSVVDLQALGERTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITGA++AL   +  + + ++    S  +  ++A++S G++ G P++DL+Y 
Sbjct: 121 ADGGTRTTSITGAFIALAIAVDKLAEKASF--KSYPITDYLASVSVGVVNGSPVLDLNYD 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VMT +G  VEVQG+ E + FS+    A+L LA+  I +LI  Q++V+  
Sbjct: 179 EDSKAKVDMNVVMTGAGQFVEVQGTGEESPFSRSELDALLGLAETGITELIGKQREVLGQ 238


>gi|229105117|ref|ZP_04235768.1| Ribonuclease PH [Bacillus cereus Rock3-28]
 gi|228678298|gb|EEL32524.1| Ribonuclease PH [Bacillus cereus Rock3-28]
          Length = 258

 Score =  335 bits (860), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 161/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR + ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 14  MRVDGRGKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 74  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++     ++DL+Y
Sbjct: 134 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVGEQGVVLDLNY 191

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 192 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRTQLNELLDAAEQGIFQLIDMQKEALG 251

Query: 240 NEV 242
           + V
Sbjct: 252 DIV 254


>gi|149908596|ref|ZP_01897258.1| putative ribonuclease PH [Moritella sp. PE36]
 gi|149808430|gb|EDM68367.1| putative ribonuclease PH [Moritella sp. PE36]
          Length = 243

 Score =  335 bits (860), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 119/242 (49%), Positives = 159/242 (65%), Gaps = 2/242 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q+R +++TR  +  AEGS LV+FG T +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPSQRTLGQVRPVTITRNFTANAEGSVLVEFGGTKVLCTATVEKGVPRFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+Q GR+ EIQR+I R+LR+ +DL +LG   IIIDCDVIQ
Sbjct: 61  AEYGMLPRSTHKRMHREAARGQQTGRTMEIQRLIARSLRACIDLESLGEHTIIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D ++ +            +K  +AA+S G+  G  + DLDY 
Sbjct: 121 ADGGTRTAAITGACVALADAIEFL--IRKGKLTVSPIKFMIAAVSVGIYKGEAVCDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT++G  +E+QG+AE   FS +    ML LAKD I  +I  QK  + +
Sbjct: 179 EDSDAETDMNVVMTETGKFIEIQGTAEGVPFSHEEMLDMLALAKDGIEMIIIEQKKALGD 238

Query: 241 EV 242
            +
Sbjct: 239 SL 240


>gi|217967720|ref|YP_002353226.1| ribonuclease PH [Dictyoglomus turgidum DSM 6724]
 gi|226736904|sp|B8E0G7|RNPH_DICTD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|217336819|gb|ACK42612.1| ribonuclease PH [Dictyoglomus turgidum DSM 6724]
          Length = 240

 Score =  335 bits (860), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 116/239 (48%), Positives = 159/239 (66%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+  R    +R + +TR+  KY  GS L++ G+T ++ T ++EEKVP +++ T  GW+T
Sbjct: 2   VRIDKRSNTDLRPVKITRKYLKYPLGSVLIEMGETKVICTVSMEEKVPPFLKGTNQGWLT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST  R  R+ V G   GRSQEIQR+IGR+LR+VVD S LG R I ID DVIQ
Sbjct: 62  AEYGMLPGSTPERKVRDVVKGAINGRSQEIQRLIGRSLRAVVDFSKLGERTIWIDADVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL+D L+ ++           ++  VAA+S G++ G  ++DL   
Sbjct: 122 ADGGTRTAAITGAFVALYDALEKLKR--EGIIKEIPIREFVAAVSVGIVDGEILLDLSAN 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED   +VD N VMT+SG  VE+QG+AE+  F+ +    MLNLAK  I  LI++QK  + 
Sbjct: 180 EDMRAEVDMNVVMTESGKFVEIQGTAEKTPFTHEQLQHMLNLAKQGIMRLIEIQKKTLG 238


>gi|217978304|ref|YP_002362451.1| ribonuclease PH [Methylocella silvestris BL2]
 gi|254808594|sp|B8ERN7|RNPH_METSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|217503680|gb|ACK51089.1| ribonuclease PH [Methylocella silvestris BL2]
          Length = 237

 Score =  335 bits (860), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 133/239 (55%), Positives = 174/239 (72%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R ++  R V++YAEGSCL+KFG TH+L TA+LE+K P W+R    GW++
Sbjct: 1   MRPSQRAADELRPVTFERNVARYAEGSCLIKFGSTHVLCTASLEDKPPAWLRGQGRGWVS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R KRE+ +G+  GR+QEIQR+IGR+LR+V +L  LG RQI IDCDV+Q
Sbjct: 61  AEYAMLPRATHTRTKRESTTGKPSGRTQEIQRLIGRSLRAVTNLQGLGERQITIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVALHDCL+ M   S        L+ HVAAISCG+  G  ++DLDY 
Sbjct: 121 ADGGTRTAAITGAWVALHDCLKWMRQRS--IIKDLPLRDHVAAISCGVSNGESVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFV+T SG +VEVQ +AE A F++    AML LA+  I  L+++QK  ++
Sbjct: 179 EDSAAETDANFVITGSGSLVEVQATAEGAVFTETQLTAMLALARGGITTLVEMQKAAVA 237


>gi|77464799|ref|YP_354303.1| RNAse PH [Rhodobacter sphaeroides 2.4.1]
 gi|77389217|gb|ABA80402.1| RNAse PH [Rhodobacter sphaeroides 2.4.1]
          Length = 241

 Score =  335 bits (860), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 128/239 (53%), Positives = 175/239 (73%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR +S+   V K+AEGSCL++ G+TH+L +A++E+K P +++NT  GW+T
Sbjct: 5   MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVT 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ VD SALG RQI+IDCDV+Q
Sbjct: 65  AEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +        +S  +  HVAA+SCG+  G P++DLDY 
Sbjct: 125 ADGGTRCASITGGWVALRLAVNKLLKAG--IIVSDPIVDHVAAVSCGIYAGQPVLDLDYA 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST   D NFV+T    ++EVQ SAE A+FS+D    +L+LA+  IA+L+  QK  + 
Sbjct: 183 EDSTAGTDGNFVLTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQKAALG 241


>gi|229098953|ref|ZP_04229888.1| Ribonuclease PH [Bacillus cereus Rock3-29]
 gi|228684451|gb|EEL38394.1| Ribonuclease PH [Bacillus cereus Rock3-29]
          Length = 258

 Score =  335 bits (860), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 14  MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 74  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++     ++DL+Y
Sbjct: 134 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 191

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 192 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRTQLNELLDAAEQGIFQLIDMQKEALG 251

Query: 240 NEV 242
           + V
Sbjct: 252 DIV 254


>gi|290477306|ref|YP_003470227.1| RNase PH [Xenorhabdus bovienii SS-2004]
 gi|289176660|emb|CBJ83469.1| RNase PH [Xenorhabdus bovienii SS-2004]
          Length = 242

 Score =  335 bits (859), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 116/238 (48%), Positives = 159/238 (66%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R +GR   Q+R I +TR  +K+AEGS LV+FGDT +L  A++EE +P +++    GWITA
Sbjct: 7   RPAGRTAGQVRPIKMTRHYTKHAEGSVLVEFGDTKVLCNASVEEGIPRFLKGQGQGWITA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T +R  REA  G+Q GR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQA
Sbjct: 67  EYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAI+GA VAL D L  +   ++       +K  VAA+S G++ G  + DL+Y E
Sbjct: 127 DGGTRTAAISGACVALVDALNKL--VADGKLKKSPMKSMVAAVSVGIVEGEGLCDLEYVE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  + D N VM D G ++EVQG+AE   FS D   ++L+LAK+ +  +   Q+D + 
Sbjct: 185 DSAAETDMNIVMMDDGRMIEVQGTAEGEPFSHDELLSLLSLAKEGLETIFAAQRDALK 242


>gi|30264550|ref|NP_846927.1| ribonuclease PH [Bacillus anthracis str. Ames]
 gi|47530015|ref|YP_021364.1| ribonuclease PH [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187372|ref|YP_030624.1| ribonuclease PH [Bacillus anthracis str. Sterne]
 gi|49481507|ref|YP_038534.1| ribonuclease PH [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52141017|ref|YP_085813.1| ribonuclease PH [Bacillus cereus E33L]
 gi|162382773|ref|YP_896797.2| ribonuclease PH [Bacillus thuringiensis str. Al Hakam]
 gi|165871495|ref|ZP_02216142.1| ribonuclease PH [Bacillus anthracis str. A0488]
 gi|167635642|ref|ZP_02393954.1| ribonuclease PH [Bacillus anthracis str. A0442]
 gi|167641666|ref|ZP_02399911.1| ribonuclease PH [Bacillus anthracis str. A0193]
 gi|170688310|ref|ZP_02879520.1| ribonuclease PH [Bacillus anthracis str. A0465]
 gi|170708334|ref|ZP_02898778.1| ribonuclease PH [Bacillus anthracis str. A0389]
 gi|177653076|ref|ZP_02935363.1| ribonuclease PH [Bacillus anthracis str. A0174]
 gi|190566932|ref|ZP_03019848.1| ribonuclease PH [Bacillus anthracis Tsiankovskii-I]
 gi|196034453|ref|ZP_03101862.1| ribonuclease PH [Bacillus cereus W]
 gi|196039169|ref|ZP_03106475.1| tRNA nucleotidyltransferase [Bacillus cereus NVH0597-99]
 gi|196044912|ref|ZP_03112146.1| ribonuclease PH [Bacillus cereus 03BB108]
 gi|218905683|ref|YP_002453517.1| ribonuclease PH [Bacillus cereus AH820]
 gi|225866464|ref|YP_002751842.1| ribonuclease PH [Bacillus cereus 03BB102]
 gi|227817261|ref|YP_002817270.1| ribonuclease PH [Bacillus anthracis str. CDC 684]
 gi|228929528|ref|ZP_04092547.1| Ribonuclease PH [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228935800|ref|ZP_04098612.1| Ribonuclease PH [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228948205|ref|ZP_04110489.1| Ribonuclease PH [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|229093577|ref|ZP_04224678.1| Ribonuclease PH [Bacillus cereus Rock3-42]
 gi|229124021|ref|ZP_04253213.1| Ribonuclease PH [Bacillus cereus 95/8201]
 gi|229186723|ref|ZP_04313881.1| Ribonuclease PH [Bacillus cereus BGSC 6E1]
 gi|229601018|ref|YP_002868764.1| tRNA nucleotidyltransferase [Bacillus anthracis str. A0248]
 gi|254687030|ref|ZP_05150888.1| ribonuclease PH [Bacillus anthracis str. CNEVA-9066]
 gi|254724592|ref|ZP_05186375.1| ribonuclease PH [Bacillus anthracis str. A1055]
 gi|254736584|ref|ZP_05194290.1| ribonuclease PH [Bacillus anthracis str. Western North America
           USA6153]
 gi|254741622|ref|ZP_05199309.1| ribonuclease PH [Bacillus anthracis str. Kruger B]
 gi|254754780|ref|ZP_05206815.1| ribonuclease PH [Bacillus anthracis str. Vollum]
 gi|254757612|ref|ZP_05209639.1| ribonuclease PH [Bacillus anthracis str. Australia 94]
 gi|301055992|ref|YP_003794203.1| ribonuclease PH [Bacillus anthracis CI]
 gi|61215848|sp|Q633V4|RNPH_BACCZ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61215928|sp|Q6HD42|RNPH_BACHK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61216034|sp|Q81LA9|RNPH_BACAN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736884|sp|B7JQ74|RNPH_BACC0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808577|sp|C3PA74|RNPH_BACAA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808578|sp|C3L7T5|RNPH_BACAC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808579|sp|C1ETS9|RNPH_BACC3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|30259208|gb|AAP28413.1| tRNA nucleotidyltransferase [Bacillus anthracis str. Ames]
 gi|47505163|gb|AAT33839.1| ribonuclease PH [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181299|gb|AAT56675.1| ribonuclease PH [Bacillus anthracis str. Sterne]
 gi|49333063|gb|AAT63709.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974486|gb|AAU16036.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Bacillus
           cereus E33L]
 gi|164712792|gb|EDR18322.1| ribonuclease PH [Bacillus anthracis str. A0488]
 gi|167510373|gb|EDR85774.1| ribonuclease PH [Bacillus anthracis str. A0193]
 gi|167529062|gb|EDR91817.1| ribonuclease PH [Bacillus anthracis str. A0442]
 gi|170126709|gb|EDS95592.1| ribonuclease PH [Bacillus anthracis str. A0389]
 gi|170667816|gb|EDT18569.1| ribonuclease PH [Bacillus anthracis str. A0465]
 gi|172081600|gb|EDT66671.1| ribonuclease PH [Bacillus anthracis str. A0174]
 gi|190561923|gb|EDV15892.1| ribonuclease PH [Bacillus anthracis Tsiankovskii-I]
 gi|195992995|gb|EDX56954.1| ribonuclease PH [Bacillus cereus W]
 gi|196024400|gb|EDX63073.1| ribonuclease PH [Bacillus cereus 03BB108]
 gi|196029796|gb|EDX68397.1| tRNA nucleotidyltransferase [Bacillus cereus NVH0597-99]
 gi|218536266|gb|ACK88664.1| ribonuclease PH [Bacillus cereus AH820]
 gi|225790478|gb|ACO30695.1| tRNA nucleotidyltransferase [Bacillus cereus 03BB102]
 gi|227004760|gb|ACP14503.1| tRNA nucleotidyltransferase [Bacillus anthracis str. CDC 684]
 gi|228596736|gb|EEK54398.1| Ribonuclease PH [Bacillus cereus BGSC 6E1]
 gi|228659323|gb|EEL14971.1| Ribonuclease PH [Bacillus cereus 95/8201]
 gi|228689786|gb|EEL43592.1| Ribonuclease PH [Bacillus cereus Rock3-42]
 gi|228811563|gb|EEM57900.1| Ribonuclease PH [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228823857|gb|EEM69677.1| Ribonuclease PH [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228830107|gb|EEM75725.1| Ribonuclease PH [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|229265426|gb|ACQ47063.1| tRNA nucleotidyltransferase [Bacillus anthracis str. A0248]
 gi|300378161|gb|ADK07065.1| ribonuclease PH [Bacillus cereus biovar anthracis str. CI]
          Length = 245

 Score =  335 bits (859), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++     ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 238

Query: 240 NEV 242
           + V
Sbjct: 239 DIV 241


>gi|296393943|ref|YP_003658827.1| ribonuclease PH [Segniliparus rotundus DSM 44985]
 gi|296181090|gb|ADG97996.1| ribonuclease PH [Segniliparus rotundus DSM 44985]
          Length = 261

 Score =  335 bits (859), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 111/238 (46%), Positives = 157/238 (65%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR +++MR + +TR  +    GS LV+FG T +   A++ E VP W + T  GW+TA
Sbjct: 4   RLDGRHDDEMRPVKITRGFTSNPPGSVLVEFGQTRVFCAASVTEGVPRWRKGTGEGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V G+ GGR+QEI R+IGR+LR+ +DL+ALG   I +DCDV+QA
Sbjct: 64  EYAMLPAATATRNDRESVKGKLGGRTQEISRLIGRSLRACIDLAALGENTISVDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +   S +    Q +   +AA+S G++ G   +DL Y E
Sbjct: 124 DGGTRTAAITGAFVALSDAVTWL-AASGRLADPQPISCGIAAVSVGVVDGRVRLDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D+  +VD N V TD+G +VEVQG+AE ATF +     +L+LA   I  L+  Q++ ++
Sbjct: 183 DARAEVDMNVVATDTGALVEVQGTAEGATFHRKTLDKLLDLAFSGIERLVAAQQEALA 240


>gi|110643884|ref|YP_671614.1| ribonuclease PH [Escherichia coli 536]
 gi|191170501|ref|ZP_03032054.1| ribonuclease PH [Escherichia coli F11]
 gi|300983477|ref|ZP_07176624.1| ribonuclease PH [Escherichia coli MS 200-1]
 gi|306816009|ref|ZP_07450147.1| ribonuclease PH [Escherichia coli NC101]
 gi|123048705|sp|Q0TBG6|RNPH_ECOL5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|110345476|gb|ABG71713.1| ribonuclease PH [Escherichia coli 536]
 gi|190909309|gb|EDV68895.1| ribonuclease PH [Escherichia coli F11]
 gi|300306941|gb|EFJ61461.1| ribonuclease PH [Escherichia coli MS 200-1]
 gi|305850405|gb|EFM50862.1| ribonuclease PH [Escherichia coli NC101]
 gi|324012723|gb|EGB81942.1| ribonuclease PH [Escherichia coli MS 60-1]
          Length = 238

 Score =  335 bits (859), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 126/240 (52%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D LQ + +  N    +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALQKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVVTQKAALAN 238


>gi|126463642|ref|YP_001044756.1| ribonuclease PH [Rhodobacter sphaeroides ATCC 17029]
 gi|166228308|sp|A3PNR8|RNPH_RHOS1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|126105306|gb|ABN77984.1| RNAse PH [Rhodobacter sphaeroides ATCC 17029]
          Length = 237

 Score =  335 bits (859), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 128/239 (53%), Positives = 175/239 (73%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR +S+   V K+AEGSCL++ G+TH+L +A++E+K P +++NT  GW+T
Sbjct: 1   MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ VD SALG RQI+IDCDV+Q
Sbjct: 61  AEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +        +S  +  HVAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLLKAG--IIVSDPIVDHVAAVSCGIYAGQPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST   D NFV+T    ++EVQ SAE A+FS+D    +L+LA+  IA+L+  QK  + 
Sbjct: 179 EDSTAGTDGNFVLTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQKAALG 237


>gi|259906754|ref|YP_002647110.1| ribonuclease PH [Erwinia pyrifoliae Ep1/96]
 gi|224962376|emb|CAX53831.1| Ribonuclease PH (TRNA nucleotidyltransferase) [Erwinia pyrifoliae
           Ep1/96]
 gi|283476540|emb|CAY72368.1| ribonuclease PH [Erwinia pyrifoliae DSM 12163]
 gi|310765964|gb|ADP10914.1| ribonuclease PH [Erwinia sp. Ejp617]
          Length = 238

 Score =  335 bits (859), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 124/240 (51%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GW+T
Sbjct: 1   MRPSGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATIEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ +DL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L H+         +  +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNHLVSIGKL--KANPMKGMVAAISVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G ++EVQG+AE   FS +    +L LA+  I  L+  QK  ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLKLLELARGGIDTLVAAQKAALTN 238


>gi|113866973|ref|YP_725462.1| ribonuclease PH [Ralstonia eutropha H16]
 gi|123134290|sp|Q0KD27|RNPH_RALEH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|113525749|emb|CAJ92094.1| Ribonuclease PH [Ralstonia eutropha H16]
          Length = 239

 Score =  335 bits (859), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 128/239 (53%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  + +R ISLTR  +++AEGS L  FGDT +L TA++  KVP   + +  GW+T
Sbjct: 1   MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHKKGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRA+RSV DL+ALG   + +DCDV+Q
Sbjct: 61  AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTVHLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VA HD +  M    +    +  ++ HVAA+S GM+ G P++DLDY 
Sbjct: 121 ADGGTRTAAITGAFVAAHDAVSTM--LRDGLIAASPIRDHVAAVSVGMVDGVPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS+ D D N VMT SG  VEVQG+AE A FS+    AM  LA+  IA L++ Q++ + 
Sbjct: 179 EDSSCDTDMNVVMTGSGGFVEVQGTAEGAPFSRADLDAMTRLAEAGIARLVQHQREALG 237


>gi|76580232|gb|ABA49707.1| ribonuclease PH [Burkholderia pseudomallei 1710b]
          Length = 622

 Score =  335 bits (859), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 124/239 (51%), Positives = 171/239 (71%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R SGR+ +Q+R++ +TR  +K+AEG+ LV+FGDT ++ TA++ E+VP ++R    GW+T
Sbjct: 385 LRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLT 444

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQ
Sbjct: 445 AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQ 504

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA HD +  +            +  +VAAIS G+  G P++DLDY 
Sbjct: 505 ADGGTRTASITGAFVAAHDAVTKLVAAGRI--ARSPITDYVAAISVGVFGGTPVLDLDYD 562

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT +G  VEVQG+AE A FS+    A+L+LA+  I +L++LQ+  + 
Sbjct: 563 EDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAALE 621


>gi|255324313|ref|ZP_05365434.1| tRNA nucleotidyltransferase [Corynebacterium tuberculostearicum
           SK141]
 gi|255298643|gb|EET77939.1| tRNA nucleotidyltransferase [Corynebacterium tuberculostearicum
           SK141]
          Length = 242

 Score =  335 bits (859), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 104/238 (43%), Positives = 154/238 (64%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +QMR + +TR  +    GS LV+FG+T ++ TA++E  VP + R++  GW+TA
Sbjct: 6   RADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEYGVPRFKRDSGEGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R+ RE++ G+  GR+ EI R++GR+LR+ VDL  LG   I +DCDV+QA
Sbjct: 66  EYAMLPSATHDRMPRESMKGKVKGRTHEISRLVGRSLRAAVDLEELGENTIQLDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D + H++  +      + L   +AA+S G++ G   +DL Y E
Sbjct: 126 DGGTRTASITGAYVALADAIAHLK--AEGVVPGEPLLDSIAAVSVGIIDGEICLDLPYEE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N VM +SG  VE+QG+ E   F ++    ML++A+    +LI  QK  + 
Sbjct: 184 DSRAEVDLNVVMQESGDFVEIQGTGEHGLFGREDLNEMLDVAQKGCRELIAAQKAALG 241


>gi|226307366|ref|YP_002767326.1| ribonuclease PH [Rhodococcus erythropolis PR4]
 gi|229494008|ref|ZP_04387777.1| ribonuclease PH [Rhodococcus erythropolis SK121]
 gi|259494126|sp|C1A1V2|RNPH_RHOE4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226186483|dbj|BAH34587.1| ribonuclease PH [Rhodococcus erythropolis PR4]
 gi|229319077|gb|EEN84929.1| ribonuclease PH [Rhodococcus erythropolis SK121]
          Length = 261

 Score =  335 bits (859), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 104/240 (43%), Positives = 159/240 (66%), Gaps = 1/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  + +  GS LV+FG+T ++ TA++EE VP W + +  GW+TA
Sbjct: 4   REDGRADDELRTVKITRGFTSHPAGSVLVEFGNTRVMCTASVEEGVPRWRKGSGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V G+ GGR+QEI R+IGR+LR+ +DL+A+G   I +DCDV+QA
Sbjct: 64  EYAMLPAATHTRSGRESVKGKVGGRTQEISRLIGRSLRACIDLAAIGENTIALDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAA+TGA+VAL D + ++   ++     Q +   +AA+S G++ G   +DL Y E
Sbjct: 124 DGGTRTAAVTGAYVALVDAVTYLR-AADLLSDPQPISCGIAAVSVGVVDGRVRLDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  +VD N V TD+G +VE+QG+ E ATF +     +L+ A      L ++Q+  ++  
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFEIQRQALAEP 242


>gi|332527984|ref|ZP_08404018.1| tRNA nucleotidyltransferase [Rubrivivax benzoatilyticus JA2]
 gi|332112558|gb|EGJ12351.1| tRNA nucleotidyltransferase [Rubrivivax benzoatilyticus JA2]
          Length = 241

 Score =  335 bits (859), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 121/229 (52%), Positives = 160/229 (69%), Gaps = 2/229 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R SGR  + +R +++TR  +K+AEGS LV FGDT +L TA++EEKVP   R +  GW+T
Sbjct: 4   VRSSGRAHDALRPVTITRHYTKHAEGSVLVCFGDTQVLCTASVEEKVPPHKRGSGEGWVT 63

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V DL ALG R I+IDCDV+Q
Sbjct: 64  AEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRTVFDLGALGERSILIDCDVLQ 123

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VA  D +  +   +     +  ++  VAAIS G++ G P++DL+Y 
Sbjct: 124 ADGGTRTAAITGAFVAAQDAVNWL--LAQGKIAASPIRDQVAAISVGIVQGTPLLDLEYI 181

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
           EDS  D D N VMT SG  VE+QG+AE   F++    A+L LA   I +
Sbjct: 182 EDSACDTDMNVVMTGSGGFVEIQGTAEGVPFTRAEMDALLALAGKGIGE 230


>gi|229163445|ref|ZP_04291396.1| Ribonuclease PH [Bacillus cereus R309803]
 gi|228620014|gb|EEK76889.1| Ribonuclease PH [Bacillus cereus R309803]
          Length = 245

 Score =  334 bits (858), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++     ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 179 IEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238

Query: 240 NEV 242
           + V
Sbjct: 239 DIV 241


>gi|194289073|ref|YP_002004980.1| ribonuclease ph [Cupriavidus taiwanensis LMG 19424]
 gi|226736900|sp|B3R3N0|RNPH_CUPTR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|193222908|emb|CAQ68913.1| RNase PH [Cupriavidus taiwanensis LMG 19424]
          Length = 239

 Score =  334 bits (858), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 128/239 (53%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  + +R ISLTR  +++AEGS L  FGDT +L TA++  KVP   + +  GW+T
Sbjct: 1   MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHKKGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRA+RSV DL+ALG   + +DCDV+Q
Sbjct: 61  AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTLHLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VA HD +  M    +    +  ++ HVAA+S GM+ G P++DLDY 
Sbjct: 121 ADGGTRTAAITGAFVAAHDAVATM--LRDGLIAASPIRDHVAAVSVGMVDGVPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT SG  VEVQG+AE A FS+    AM  LA+  IA L++ Q++ + 
Sbjct: 179 EDSNCDTDMNVVMTGSGGFVEVQGTAEGAPFSRADLDAMTRLAEAGIARLVQYQREALG 237


>gi|260893784|ref|YP_003239881.1| ribonuclease PH [Ammonifex degensii KC4]
 gi|260865925|gb|ACX53031.1| ribonuclease PH [Ammonifex degensii KC4]
          Length = 258

 Score =  334 bits (858), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 117/239 (48%), Positives = 161/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MRL GR   ++R + +    SKYAEGSCL++ GDT +L TA++++KVP +++ T  GW+T
Sbjct: 1   MRLDGRGTGELRPVKIIPGYSKYAEGSCLIEMGDTRVLCTASIDDKVPSFLKGTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  RE   GR  GR+ EIQR+IGR+LR+ VDL ALG R II+DCDV+Q
Sbjct: 61  AEYGMLPRATESRNLREVTKGRPSGRTLEIQRLIGRSLRAAVDLEALGERTIIVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG +VAL   L  + +      L   +K  VAA+S G +    ++DL + 
Sbjct: 121 ADGGTRTAAITGGFVALVYALDWLRNEGAIESL--PVKDLVAAVSVGKVKDAYLLDLTFA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  +VD N VMT  G +VEVQG+AE   F+++    ML+LA   ++ LI  Q++ + 
Sbjct: 179 EDSMAEVDLNVVMTGKGELVEVQGTAEGKPFTREELNLMLDLAAQGVSVLIAKQREALG 237


>gi|228954763|ref|ZP_04116785.1| Ribonuclease PH [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|107124175|gb|ABF83610.1| Rph [Bacillus thuringiensis serovar kurstaki]
 gi|228804961|gb|EEM51558.1| Ribonuclease PH [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 245

 Score =  334 bits (858), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++     ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQVEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238

Query: 240 NEV 242
           + V
Sbjct: 239 DIV 241


>gi|1079663|gb|AAC44429.1| RNase PH [Pseudomonas aeruginosa PAO1]
          Length = 239

 Score =  334 bits (858), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 118/239 (49%), Positives = 158/239 (66%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T + E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGML RSTG R +REA  G+QGGR+ EIQR+I R+LR+ +DLS LG   + IDCDVIQ 
Sbjct: 63  EYGMLRRSTGERNQREASRGKQGGRTLEIQRLIDRSLRAALDLSKLGENTLYIDCDVIQT 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA V+L D L  ++           LK  VAA+S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGATVSLIDALAVLKK--RVALKGNPLKQIVAAVSVGIYQGVPVLDLDYLE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  + D N VMTD    +EVQG+AE A F      AML LA+  + +L++ Q+  ++ 
Sbjct: 181 DSAAESDLNVVMTDCRRFIEVQGTAEGAPFRPAELNAMLELAQQGMQELVRTQRAALAE 239


>gi|118418871|gb|ABK87290.1| RNAse PH [Bacillus thuringiensis str. Al Hakam]
          Length = 251

 Score =  334 bits (858), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 7   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 66

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 67  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 126

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++     ++DL+Y
Sbjct: 127 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 184

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 185 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 244

Query: 240 NEV 242
           + V
Sbjct: 245 DIV 247


>gi|30022573|ref|NP_834204.1| ribonuclease PH [Bacillus cereus ATCC 14579]
 gi|42783632|ref|NP_980879.1| ribonuclease PH [Bacillus cereus ATCC 10987]
 gi|206969838|ref|ZP_03230792.1| ribonuclease PH [Bacillus cereus AH1134]
 gi|206976011|ref|ZP_03236921.1| ribonuclease PH [Bacillus cereus H3081.97]
 gi|217961976|ref|YP_002340546.1| ribonuclease PH [Bacillus cereus AH187]
 gi|222097944|ref|YP_002532001.1| ribonuclease ph [Bacillus cereus Q1]
 gi|228910315|ref|ZP_04074132.1| Ribonuclease PH [Bacillus thuringiensis IBL 200]
 gi|228960757|ref|ZP_04122396.1| Ribonuclease PH [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228987732|ref|ZP_04147843.1| Ribonuclease PH [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229048198|ref|ZP_04193767.1| Ribonuclease PH [Bacillus cereus AH676]
 gi|229071999|ref|ZP_04205209.1| Ribonuclease PH [Bacillus cereus F65185]
 gi|229081747|ref|ZP_04214240.1| Ribonuclease PH [Bacillus cereus Rock4-2]
 gi|229111953|ref|ZP_04241497.1| Ribonuclease PH [Bacillus cereus Rock1-15]
 gi|229129777|ref|ZP_04258744.1| Ribonuclease PH [Bacillus cereus BDRD-Cer4]
 gi|229141223|ref|ZP_04269762.1| Ribonuclease PH [Bacillus cereus BDRD-ST26]
 gi|229147051|ref|ZP_04275411.1| Ribonuclease PH [Bacillus cereus BDRD-ST24]
 gi|229152684|ref|ZP_04280872.1| Ribonuclease PH [Bacillus cereus m1550]
 gi|229158099|ref|ZP_04286169.1| Ribonuclease PH [Bacillus cereus ATCC 4342]
 gi|229180760|ref|ZP_04308098.1| Ribonuclease PH [Bacillus cereus 172560W]
 gi|229198610|ref|ZP_04325312.1| Ribonuclease PH [Bacillus cereus m1293]
 gi|296504969|ref|YP_003666669.1| ribonuclease PH [Bacillus thuringiensis BMB171]
 gi|61215974|sp|Q72ZT1|RNPH_BACC1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61216033|sp|Q817P3|RNPH_BACCR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736887|sp|B7HQP4|RNPH_BACC7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808580|sp|B9IZ73|RNPH_BACCQ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|29898131|gb|AAP11405.1| Ribonuclease PH [Bacillus cereus ATCC 14579]
 gi|42739561|gb|AAS43487.1| ribonuclease PH [Bacillus cereus ATCC 10987]
 gi|206735526|gb|EDZ52694.1| ribonuclease PH [Bacillus cereus AH1134]
 gi|206745763|gb|EDZ57160.1| ribonuclease PH [Bacillus cereus H3081.97]
 gi|217063584|gb|ACJ77834.1| ribonuclease PH [Bacillus cereus AH187]
 gi|221242002|gb|ACM14712.1| ribonuclease PH [Bacillus cereus Q1]
 gi|228584892|gb|EEK43008.1| Ribonuclease PH [Bacillus cereus m1293]
 gi|228602738|gb|EEK60221.1| Ribonuclease PH [Bacillus cereus 172560W]
 gi|228625418|gb|EEK82175.1| Ribonuclease PH [Bacillus cereus ATCC 4342]
 gi|228630830|gb|EEK87471.1| Ribonuclease PH [Bacillus cereus m1550]
 gi|228636439|gb|EEK92909.1| Ribonuclease PH [Bacillus cereus BDRD-ST24]
 gi|228642264|gb|EEK98556.1| Ribonuclease PH [Bacillus cereus BDRD-ST26]
 gi|228653693|gb|EEL09564.1| Ribonuclease PH [Bacillus cereus BDRD-Cer4]
 gi|228671517|gb|EEL26817.1| Ribonuclease PH [Bacillus cereus Rock1-15]
 gi|228701592|gb|EEL54085.1| Ribonuclease PH [Bacillus cereus Rock4-2]
 gi|228711158|gb|EEL63123.1| Ribonuclease PH [Bacillus cereus F65185]
 gi|228723185|gb|EEL74561.1| Ribonuclease PH [Bacillus cereus AH676]
 gi|228772006|gb|EEM20461.1| Ribonuclease PH [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228798973|gb|EEM45948.1| Ribonuclease PH [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228849375|gb|EEM94212.1| Ribonuclease PH [Bacillus thuringiensis IBL 200]
 gi|296326021|gb|ADH08949.1| ribonuclease PH [Bacillus thuringiensis BMB171]
 gi|324328384|gb|ADY23644.1| ribonuclease PH [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 245

 Score =  334 bits (858), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++     ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238

Query: 240 NEV 242
           + V
Sbjct: 239 DIV 241


>gi|114798422|ref|YP_761988.1| ribonuclease PH [Hyphomonas neptunium ATCC 15444]
 gi|114738596|gb|ABI76721.1| ribonuclease PH [Hyphomonas neptunium ATCC 15444]
          Length = 241

 Score =  334 bits (858), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 115/239 (48%), Positives = 159/239 (66%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R +GR  +++R ISL   V++YAEGSCL KFG TH+L TA+ E+ VP W++    GW+T
Sbjct: 5   VRPTGRAFDELRPISLETSVTRYAEGSCLAKFGHTHVLCTASWEKGVPGWLKGKGEGWVT 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            EYGMLPR+T  R +REA +G+Q GR+QEIQR+IGR+LRSVVDL ALG   I IDCDVIQ
Sbjct: 65  GEYGMLPRATHTRGRREAAAGKQSGRTQEIQRLIGRSLRSVVDLKALGENTITIDCDVIQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +VAL    ++++  +     +  ++   AAIS G+   +P++D+DY 
Sbjct: 125 ADGGTRTASITGGFVALAMACRYLQ--TEGVIKASPIQKQAAAISVGLFQNHPVLDVDYP 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM+  G  +EVQG+ E    S+     M+ LA+    +L   Q+  I 
Sbjct: 183 EDSEGEADMNVVMSSDGGFIEVQGTGESRPMSRTELDEMMRLAEKGCNELFAAQRAAIG 241


>gi|222056103|ref|YP_002538465.1| ribonuclease PH [Geobacter sp. FRC-32]
 gi|254808588|sp|B9M3E3|RNPH_GEOSF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|221565392|gb|ACM21364.1| ribonuclease PH [Geobacter sp. FRC-32]
          Length = 238

 Score =  334 bits (858), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 126/239 (52%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR E  +RE+ +TR   K+AEGS LV+FGDT ++ TA++E  VP ++R    GW+T
Sbjct: 1   MRFDGRGEGSLREVRITRNYIKHAEGSVLVEFGDTKVICTASVESSVPPFLRGKGTGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  REA  G+ GGR+ EIQR+IGR+LR+VVD+S LG R IIIDCDVIQ
Sbjct: 61  AEYSMLPRATHSRSPREAAKGKVGGRTHEIQRLIGRSLRAVVDMSLLGERSIIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D LQ +         S  ++  VAA+S G++ G  ++DL+Y 
Sbjct: 121 ADGGTRTASITGAYVALCDALQGLVAKGEL--SSLPIREAVAAVSVGIVGGVAVLDLNYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  +VD NFVMT S   VEVQG+AE   F+ +   AM  LA D I  L ++Q+ V++
Sbjct: 179 EDSAAEVDMNFVMTSSNRFVEVQGTAEAEPFTIEQMDAMRTLAVDGIKQLFQIQQAVLA 237


>gi|300113393|ref|YP_003759968.1| ribonuclease PH [Nitrosococcus watsonii C-113]
 gi|299539330|gb|ADJ27647.1| ribonuclease PH [Nitrosococcus watsonii C-113]
          Length = 239

 Score =  334 bits (858), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 169/239 (70%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +++R I  TR  ++YAEGS LV+FG+T ++  A++E+++P +++ T  GWIT
Sbjct: 1   MRPSGRAPHELRPIHFTRHYTQYAEGSVLVEFGNTRVICNASVEDRIPRFLKGTGRGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST NR+ REA  GRQGGR+ EIQR+IGRALR+VVDL+ALG   + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHNRMGREAAQGRQGGRTLEIQRLIGRALRAVVDLAALGEVTVTLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VAL D +        +      + G +A++S G+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGSYVALVDAIH--NRLKKRAIAHSPIHGQIASVSVGIYEGTPVLDLDYR 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST + D N VM ++G  +E+QG+AE   F  +   AML LAK+ I  L+  Q +V++
Sbjct: 179 EDSTAETDMNVVMNEAGAFIEIQGTAEGHAFRMNELQAMLELAKNGITTLLAQQTEVLA 237


>gi|330466053|ref|YP_004403796.1| ribonuclease PH [Verrucosispora maris AB-18-032]
 gi|328809024|gb|AEB43196.1| ribonuclease PH [Verrucosispora maris AB-18-032]
          Length = 243

 Score =  334 bits (858), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 118/240 (49%), Positives = 158/240 (65%), Gaps = 1/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ +Q+R ++LTR  S + EGS LV+FG T +L TA++ E VP W R +  GW+TA
Sbjct: 3   RPDGRQPDQLRPVTLTRGWSTHPEGSVLVEFGATRVLCTASVTEGVPRWRRGSGLGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+ +DL ALG   I++DCDV+QA
Sbjct: 63  EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRAAIDLKALGENSIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS-QVLKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTAAITGA+VALHD +  +           +V+   VAAIS G++ G P +DL Y 
Sbjct: 123 DGGTRTAAITGAYVALHDAVSWLAARKALTGTPEKVMHRSVAAISVGVVAGEPRLDLCYD 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   +VD N V T +G  VEVQG+ E   F++D   A+L+LA     DL + Q+  + +
Sbjct: 183 EDVAAEVDMNVVCTGAGDFVEVQGTGEAGVFARDQLDALLDLATVGCLDLAEAQRKALGS 242


>gi|315645714|ref|ZP_07898838.1| hypothetical protein PVOR_09560 [Paenibacillus vortex V453]
 gi|315279192|gb|EFU42502.1| hypothetical protein PVOR_09560 [Paenibacillus vortex V453]
          Length = 252

 Score =  334 bits (858), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 113/239 (47%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR+ +++R ++L+  V+KYAEGS  ++ GDT +L TAT++EKVP +++    GW+T
Sbjct: 1   MRSNGRKSDELRPMNLSTHVNKYAEGSVYIEMGDTKVLITATVDEKVPPFLKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R +REA  G+  GR+ EIQR+IGRALRSVV+L ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATQSRNQREANRGKLTGRTMEIQRLIGRALRSVVNLYALGERTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITGA+VAL   +  + +          +  ++A+IS G+  G  ++DL+Y 
Sbjct: 121 ADGGTRTTSITGAFVALAIAVNKIAEQHKLAVF--PITDYLASISVGIAGGQALLDLNYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD N VMT  G  VEVQG+ E + FS++    +L L +  I +LI+ Q++ + 
Sbjct: 179 EDSKAKVDMNLVMTGGGKFVEVQGTGEESPFSREELDQILELGEKGIRELIERQQEALG 237


>gi|332559695|ref|ZP_08414017.1| ribonuclease PH [Rhodobacter sphaeroides WS8N]
 gi|332277407|gb|EGJ22722.1| ribonuclease PH [Rhodobacter sphaeroides WS8N]
          Length = 237

 Score =  334 bits (858), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 128/239 (53%), Positives = 174/239 (72%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR +S+   V K+AEGSCL++ G+TH+L +A++E+K P +++NT  GW+T
Sbjct: 1   MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ VD SALG RQI+IDCDV+Q
Sbjct: 61  AEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +        +S  +  HVAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLLKAG--IIVSDPIVDHVAAVSCGIYAGQPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST   D NFV T    ++EVQ SAE A+FS+D    +L+LA+  IA+L+  QK  + 
Sbjct: 179 EDSTAGTDGNFVFTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQKAALG 237


>gi|302390319|ref|YP_003826140.1| RNAse PH [Thermosediminibacter oceani DSM 16646]
 gi|302200947|gb|ADL08517.1| RNAse PH [Thermosediminibacter oceani DSM 16646]
          Length = 252

 Score =  334 bits (858), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 119/241 (49%), Positives = 170/241 (70%), Gaps = 4/241 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ +++R +++ RR +KYAEGS L++ GDT ++ TAT++EKVP ++R    GW+TA
Sbjct: 3   RADGREFDEIRPVNIIRRFNKYAEGSVLIEAGDTKVICTATVDEKVPPFLRGKGQGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE++  +  GR+ EIQR+IGRA+RSVVDL+ALG R + +DCDVIQA
Sbjct: 63  EYSMLPRATEIRNIRESL--KPSGRTMEIQRLIGRAMRSVVDLAALGERTVWLDCDVIQA 120

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D  ++++D  N       +   VAA+S G++ G  ++DL++ E
Sbjct: 121 DGGTRTAAITGAFVALVDAFKYLKD--NGIIEVIPVNSFVAAVSVGIVDGEKLLDLNFEE 178

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D    VD N VMTD G +VEVQG+ E   F++     ML+LA+  + +LI +QK V+S+ 
Sbjct: 179 DCRAQVDMNVVMTDKGQLVEVQGTGEAFPFTRQDLNDMLDLAQKGVFELISIQKQVLSDV 238

Query: 242 V 242
           V
Sbjct: 239 V 239


>gi|229032136|ref|ZP_04188113.1| Ribonuclease PH [Bacillus cereus AH1271]
 gi|228729192|gb|EEL80191.1| Ribonuclease PH [Bacillus cereus AH1271]
          Length = 245

 Score =  334 bits (857), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++     ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVQEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238

Query: 240 NEV 242
           + V
Sbjct: 239 DIV 241


>gi|319778262|ref|YP_004129175.1| Ribonuclease PH [Taylorella equigenitalis MCE9]
 gi|317108286|gb|ADU91032.1| Ribonuclease PH [Taylorella equigenitalis MCE9]
          Length = 251

 Score =  334 bits (857), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 115/238 (48%), Positives = 159/238 (66%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R +S+TR  + YAEGS L+K G TH+L  A++  KVP +++    GW+TA
Sbjct: 8   RSDGRSNNQIRNVSITRNYTPYAEGSVLIKVGQTHVLCNASVLPKVPPFLKGQGTGWVTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T +R+ REA  G+Q GR+QEIQR+IGR+LR+ +DL+ALG   I IDCDVIQA
Sbjct: 68  EYGMLPRATHDRMDREASKGKQTGRTQEIQRLIGRSLRACIDLAALGEISIHIDCDVIQA 127

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+ITGAWVAL+D +            S  +   + AIS G++    ++DLDY E
Sbjct: 128 DGGTRCASITGAWVALYDAINK--CIERGLIQSNPIHQQIVAISVGVVGDGLLLDLDYSE 185

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  + D N VMT +   VE+QG+AE  TFS+D    +L+LA+     L+++Q + + 
Sbjct: 186 DSNCESDINVVMTSNKTFVEIQGTAEGETFSRDSLNQLLDLAQFGCDQLLRVQLESLG 243


>gi|19705156|ref|NP_602651.1| ribonuclease PH [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19713093|gb|AAL93950.1| Ribonuclease PH [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 434

 Score =  334 bits (857), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 111/241 (46%), Positives = 158/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  N+ R+I +T+ V+ YAEGS L++ G+T ++ TA++ +KVP ++R T  GW+T
Sbjct: 2   LREDGRNFNEERKIKITKNVNIYAEGSVLIEVGNTKVICTASVSDKVPSFLRGTGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+IGRALR+ +DL  LG R I IDCDVIQ
Sbjct: 62  AEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG ++AL   ++ +     +      L  +VAAIS G +    +VDL Y 
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKL--LQEEILEENPLISNVAAISVGKIDSNLMVDLKYS 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  +VD N +M      +EVQG+ E +TF++     +L+LA++ I  LI+LQ  +I+ 
Sbjct: 180 EDSAAEVDMNVIMNKKDEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQDRIINQ 239

Query: 241 E 241
           E
Sbjct: 240 E 240


>gi|228917119|ref|ZP_04080677.1| Ribonuclease PH [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228842537|gb|EEM87627.1| Ribonuclease PH [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 245

 Score =  334 bits (857), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++     ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLRAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 238

Query: 240 NEV 242
           + V
Sbjct: 239 DIV 241


>gi|254418052|ref|ZP_05031776.1| ribonuclease PH [Brevundimonas sp. BAL3]
 gi|196184229|gb|EDX79205.1| ribonuclease PH [Brevundimonas sp. BAL3]
          Length = 241

 Score =  334 bits (857), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 124/239 (51%), Positives = 171/239 (71%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R ++Q+R +++   V++YAEGSCL+ FG T +L TA++EE +P W+R    GW+T
Sbjct: 1   MRHSQRTDDQLRPVTIETGVNRYAEGSCLITFGHTKVLVTASVEETIPGWMRGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQ+++DCDVIQ
Sbjct: 61  AEYGMLPRATHTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQVVLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVA+   L ++ D       S  +   VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVAMASALNYLRD--EGVLKSDPILDQVAAVSCGVCDGVPVLDLDYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D+NFV+T +G IVEVQ + E+  FS+  F  + +LA+    +L  LQK  + 
Sbjct: 179 EDSEAEADSNFVLTGAGQIVEVQATGEKRGFSRAEFDRLFSLAEIGCTELFALQKAALE 237


>gi|227502998|ref|ZP_03933047.1| ribonuclease PH [Corynebacterium accolens ATCC 49725]
 gi|227076059|gb|EEI14022.1| ribonuclease PH [Corynebacterium accolens ATCC 49725]
          Length = 242

 Score =  334 bits (857), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 105/238 (44%), Positives = 155/238 (65%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +QMR + +TR  +    GS LV+FG+T ++ TA++E  VP + R++  GW+TA
Sbjct: 6   RADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R+ RE++ G+  GR+ EI R++GR+LR+ VDL  LG   I +DCDV+QA
Sbjct: 66  EYAMLPSATHDRMPRESMRGKVKGRTHEISRLVGRSLRAAVDLEELGENTIQLDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D + H++  S      + L   +AA+S G++ G   +DL Y E
Sbjct: 126 DGGTRTASITGAYVALADAIAHLK--SEGVVPGEPLLDPIAAVSVGIIDGEICLDLPYEE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N VM +SG  VE+QG+ E   F ++    ML++A+   ++LI  QK  + 
Sbjct: 184 DSRAEVDLNVVMQESGDFVEIQGTGEHGLFGREQLNGMLDVAQKGCSELIAAQKAALG 241


>gi|296139019|ref|YP_003646262.1| ribonuclease PH [Tsukamurella paurometabola DSM 20162]
 gi|296027153|gb|ADG77923.1| ribonuclease PH [Tsukamurella paurometabola DSM 20162]
          Length = 260

 Score =  334 bits (857), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 109/238 (45%), Positives = 158/238 (66%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R +++TR  ++   GS LV+FG+T +L TA++E  VP W R +  GW+TA
Sbjct: 4   RADGRADDELRPVTITRGFTQNPAGSVLVEFGNTKVLCTASVELGVPGWRRGSGQGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE+  G+ GGR+ EI R+IGR+LR+ +DL+ALG   I IDCDV+QA
Sbjct: 64  EYAMLPGATHERSRRESTKGKVGGRTHEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D + ++   + K    Q +   +AA+S G++ G   +DL Y E
Sbjct: 124 DGGTRTASITGAYVALCDAVTYL-GAAGKLTDPQPISCAIAAVSVGVVDGRVRLDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VEVQG+ E ATF++     ML+ A      L  +QK  ++
Sbjct: 183 DSRAEVDMNVVATDTGTLVEVQGTGEGATFARTTLDWMLDSALSGTEKLFAVQKQALA 240


>gi|227548661|ref|ZP_03978710.1| ribonuclease PH [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079275|gb|EEI17238.1| ribonuclease PH [Corynebacterium lipophiloflavum DSM 44291]
          Length = 246

 Score =  334 bits (857), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 105/238 (44%), Positives = 154/238 (64%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR  ++MR + +TR  +    GS LV+FG T ++ TA++E  VP + +++  GW+TA
Sbjct: 10  RLDGRAFDEMRPVRITRGFTTNPAGSVLVEFGATRVMCTASVEVGVPRFKKDSGEGWLTA 69

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R+ RE++ G+  GR+ EI R++GR+LR+ VDL+ LG   I +DCDV+QA
Sbjct: 70  EYAMLPSATHERMPRESMKGKVKGRTHEISRLVGRSLRAAVDLAQLGENTIQLDCDVLQA 129

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  + +        + L   VAA+S G++ G+  +DL Y E
Sbjct: 130 DGGTRTASITGAYVALADAIAFLSE--RGLVPGEPLLAPVAAVSAGLVDGHVALDLPYEE 187

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N VM DSG+ VE+QG+ E   F +    AML +A+    +LI+ QK  + 
Sbjct: 188 DSRAEVDLNVVMNDSGNFVEIQGTGEHGLFGRAELDAMLTVAEKGCRELIEAQKAALG 245


>gi|262040695|ref|ZP_06013932.1| tRNA nucleotidyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329996940|ref|ZP_08302637.1| tRNA nucleotidyltransferase [Klebsiella sp. MS 92-3]
 gi|259041961|gb|EEW42995.1| tRNA nucleotidyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328539230|gb|EGF65259.1| tRNA nucleotidyltransferase [Klebsiella sp. MS 92-3]
          Length = 251

 Score =  334 bits (857), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 125/240 (52%), Positives = 163/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA+++E VP +++    GWIT
Sbjct: 14  MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWIT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 74  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +         +  +KG VAA+S G++ G  I DL+Y 
Sbjct: 134 ADGGTRTASITGACVALADALNKLVAAGKL--KTNPMKGMVAAVSVGIVNGEAICDLEYI 191

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  +I  QK  + N
Sbjct: 192 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIITTQKAALEN 251


>gi|326318286|ref|YP_004235958.1| ribonuclease PH [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375122|gb|ADX47391.1| ribonuclease PH [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 253

 Score =  334 bits (857), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 118/238 (49%), Positives = 160/238 (67%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R +GR  + +R + +TR  + +AEGS LV+FG T +L TA++EE+VP   R +  GW+TA
Sbjct: 12  RSAGRGVDALRPVRITRHYTMHAEGSVLVEFGHTKVLCTASVEERVPPHKRGSGEGWVTA 71

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V DL ALG R I +DCDV+QA
Sbjct: 72  EYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLRALGERTIQLDCDVLQA 131

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGAWVA HD +  +   +     +  +   +AA+S G++ G P++DL+Y E
Sbjct: 132 DGGTRTAAITGAWVAAHDAVSAL--LAGGKIAASPITAPLAAVSVGIVQGTPLLDLEYTE 189

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   D D N VM D G  VEVQG+AE   F++     +L+LA   +  LI LQ+  +S
Sbjct: 190 DVQCDTDMNVVMMDGGRFVEVQGTAEGVAFTRSEMDRLLDLAAQGVDALIALQRQALS 247


>gi|229117982|ref|ZP_04247342.1| Ribonuclease PH [Bacillus cereus Rock1-3]
 gi|228665431|gb|EEL20913.1| Ribonuclease PH [Bacillus cereus Rock1-3]
          Length = 245

 Score =  334 bits (857), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++     ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRTQLNELLDAAEQGIFQLIDMQKEALG 238

Query: 240 NEV 242
           + V
Sbjct: 239 DIV 241


>gi|229818320|ref|ZP_04448601.1| hypothetical protein BIFANG_03620 [Bifidobacterium angulatum DSM
           20098]
 gi|229784190|gb|EEP20304.1| hypothetical protein BIFANG_03620 [Bifidobacterium angulatum DSM
           20098]
          Length = 254

 Score =  334 bits (857), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 107/240 (44%), Positives = 155/240 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ +++R + +TR  +   EGS L++ G+T ++ TAT    VP W +++  GW+TA
Sbjct: 15  RADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTAGVPRWRKDSGLGWVTA 74

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR VVD+ ALG   I IDCDV+QA
Sbjct: 75  EYAMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENMIQIDCDVLQA 134

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA++TGA+VAL D L   E   +     +VL   V+A+S G++ G P++DL Y E
Sbjct: 135 DGGTRTASVTGAYVALVDALDWAEKHHHIRSAKKVLTDCVSAVSVGVISGTPMLDLPYVE 194

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS    D N  MT SG  +E+QG+AE   F++D    +L+LA+    +L   Q++ ++ +
Sbjct: 195 DSAAMTDMNVAMTGSGAFIELQGTAEHRPFTRDELGTLLDLAEKGNKELQAAQREALAKD 254


>gi|83594970|ref|YP_428722.1| ribonuclease PH [Rhodospirillum rubrum ATCC 11170]
 gi|123525443|sp|Q2RN60|RNPH_RHORT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|83577884|gb|ABC24435.1| RNAse PH [Rhodospirillum rubrum ATCC 11170]
          Length = 240

 Score =  334 bits (857), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 134/240 (55%), Positives = 169/240 (70%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  + +R I L    SK+AEGSC+ +FGDTH+L TA++EE+VP W+R    GW+T
Sbjct: 1   MRPSGRAVDSLRSIVLEPGYSKHAEGSCMARFGDTHVLCTASIEERVPGWMRGGGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  GRQ GR+QEIQR+IGR+LRSV DL  +G  QI +DCDVIQ
Sbjct: 61  AEYGMLPRSTHTRTDREAARGRQSGRTQEIQRLIGRSLRSVTDLKKIGEIQIRLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG+WVAL+  L   E           L  HVAA+SCG+  G  ++DLDY 
Sbjct: 121 ADGGTRTAAITGSWVALYQALARFEKLGLGAL--PPLTDHVAAVSCGLCDGVAVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDST   DANFV+T +G IVE+QG+AE + F+Q  F  +L LA+  I +L+ LQK  +++
Sbjct: 179 EDSTAQADANFVLTGTGGIVEIQGTAETSPFAQAQFMELLALAQKGITELVALQKAALAS 238


>gi|317508770|ref|ZP_07966420.1| ribonuclease PH [Segniliparus rugosus ATCC BAA-974]
 gi|316252933|gb|EFV12353.1| ribonuclease PH [Segniliparus rugosus ATCC BAA-974]
          Length = 261

 Score =  334 bits (857), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 112/238 (47%), Positives = 157/238 (65%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR +++MR + +TR  +    GS LV+FG T +   A++ E VP W + T  GW+TA
Sbjct: 4   RLDGRHDDEMRPVKITRGFTGNPPGSVLVEFGQTRVFCAASVTEGVPRWRKGTGEGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V G+ GGR+QEI R+IGR+LR+ +DL+ALG   I +DCDV+QA
Sbjct: 64  EYAMLPAATATRNDRESVRGKLGGRTQEISRLIGRSLRACIDLAALGENTISVDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +   S +    Q +   +AA+S G++ G   +DL Y E
Sbjct: 124 DGGTRTAAITGAFVALSDAVTWL-AASGRLADPQPISCAIAAVSVGLVDGRVRLDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VEVQG+AE ATF +     +L+LA   I  L+  Q++ ++
Sbjct: 183 DSRAEVDMNVVATDTGTLVEVQGTAEGATFHRKTLDKLLDLAFAGIEQLVVAQREALA 240


>gi|306836769|ref|ZP_07469730.1| tRNA nucleotidyltransferase [Corynebacterium accolens ATCC 49726]
 gi|304567356|gb|EFM42960.1| tRNA nucleotidyltransferase [Corynebacterium accolens ATCC 49726]
          Length = 242

 Score =  334 bits (857), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 104/238 (43%), Positives = 155/238 (65%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +QMR + +TR  +    GS LV+FG+T ++ TA++E  VP + R++  GW+TA
Sbjct: 6   RADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R+ RE++ G+  GR+ EI R++GR+LR+ VDL  LG   I +DCDV+QA
Sbjct: 66  EYAMLPSATHDRMPRESMRGKVKGRTHEISRLVGRSLRAAVDLEELGENTIQLDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D + H++  +      + L   +AA+S G++ G   +DL Y E
Sbjct: 126 DGGTRTASITGAYVALADAIAHLK--AEGVVPGEPLLDPIAAVSVGIIDGEICLDLPYEE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N VM +SG  VE+QG+ E   F ++    ML++A+   ++LI  QK  + 
Sbjct: 184 DSRAEVDLNVVMQESGDFVEIQGTGEHGLFGREQLNGMLDVAQKGCSELIAAQKAALG 241


>gi|296328289|ref|ZP_06870818.1| ribonuclease PH/Ham1 protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154593|gb|EFG95381.1| ribonuclease PH/Ham1 protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 434

 Score =  334 bits (857), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 110/241 (45%), Positives = 157/241 (65%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  N+ R+I +T+ V+ YAEGS L++ G+T ++ TA++ +KVP ++R T  GW+T
Sbjct: 2   LREDGRNFNEERKIKITKNVNIYAEGSVLIEVGNTKVICTASVSDKVPSFLRGTGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+IGRALR+ +DL  LG R I IDCDVIQ
Sbjct: 62  AEYSMLPRATNERNPREASKGKLTGRTVEIQRLIGRALRASIDLEKLGERLITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG ++AL   ++ +     +      L  +VAAIS G +    +VDL Y 
Sbjct: 122 ADGGTRTTSITGGYIALALAIKKL--LQEEILEEDPLISNVAAISVGKINSNLMVDLKYS 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   +VD N +M      +EVQG+ E +TF++     +L+LA++ I  LI+LQ  +I+ 
Sbjct: 180 EDFAAEVDMNVIMNKKDEFIEVQGTGEESTFTRAELNQLLDLAENSIKRLIELQDRIINQ 239

Query: 241 E 241
           E
Sbjct: 240 E 240


>gi|213579701|ref|ZP_03361527.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 238

 Score =  334 bits (857), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 126/240 (52%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   +N    +  +KG VAA+S G++ G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   FS +    +L LA+  I  ++ +QK  + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVAMQKAALEN 238


>gi|167628594|ref|YP_001679093.1| ribonuclease ph [Heliobacterium modesticaldum Ice1]
 gi|167591334|gb|ABZ83082.1| ribonuclease ph [Heliobacterium modesticaldum Ice1]
          Length = 243

 Score =  334 bits (857), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 118/239 (49%), Positives = 159/239 (66%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GRQ +Q+R + + R+   + EGS L+  G+T ++ TAT+EEKVP + + +  GW+TA
Sbjct: 3   RVDGRQADQLRPVQIQRQYLIHPEGSVLITVGNTKVICTATVEEKVPPFQKGSGKGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +RE   G+  GR+ EIQR+IGRALRSVVDL  LG R I IDCDVIQA
Sbjct: 63  EYGMLPRATGTRTQREVTRGKATGRTMEIQRLIGRALRSVVDLQRLGERTIWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D  + +    NK      +   +AA+S G + G  ++DL Y E
Sbjct: 123 DGGTRTASITGAFVALKDACRRL--LKNKQIQKDPIIEALAAVSVGKVAGELLLDLAYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D+  +VD N VMT  G  VE+QG+AE   F +D   AML LA+  I +LI+ Q   ++ 
Sbjct: 181 DAKAEVDMNVVMTAGGRFVELQGTAEGTPFGRDELDAMLRLAEKGICELIEAQNQALAE 239


>gi|146278691|ref|YP_001168850.1| ribonuclease PH [Rhodobacter sphaeroides ATCC 17025]
 gi|166228309|sp|A4WVY1|RNPH_RHOS5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145556932|gb|ABP71545.1| RNAse PH [Rhodobacter sphaeroides ATCC 17025]
          Length = 237

 Score =  333 bits (856), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 128/239 (53%), Positives = 175/239 (73%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR +S+   V K+AEGSCL++ G+TH+L +A++E+K P +++NT  GW+T
Sbjct: 1   MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ +D SALG RQI+IDCDV+Q
Sbjct: 61  AEYGMLPRATTSRNRREATAGKQSGRTQEIQRLIGRALRAGIDRSALGERQIVIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +        +S  +  HVAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLLKAG--IVVSDPIVDHVAAVSCGIYAGQPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST   D NFV+T    ++EVQ SAE A+FS+D    +L+LA+  IADL+  QK  + 
Sbjct: 179 EDSTAGTDGNFVLTGRQRLIEVQMSAEGASFSRDEMGQLLDLAEAGIADLVAAQKAALG 237


>gi|228923234|ref|ZP_04086524.1| Ribonuclease PH [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228836440|gb|EEM81791.1| Ribonuclease PH [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 245

 Score =  333 bits (856), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 113/243 (46%), Positives = 163/243 (67%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++     ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+V+ 
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEVLG 238

Query: 240 NEV 242
           + V
Sbjct: 239 DIV 241


>gi|56694936|ref|YP_165281.1| ribonuclease PH [Ruegeria pomeroyi DSS-3]
 gi|81350765|sp|Q5LWF6|RNPH_SILPO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|56676673|gb|AAV93339.1| ribonuclease PH [Ruegeria pomeroyi DSS-3]
          Length = 237

 Score =  333 bits (856), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 125/239 (52%), Positives = 168/239 (70%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  ++MR +S+    +K+AEGSCL+K GDTH+L TAT+E++VP +I+ +  GW+T
Sbjct: 1   MRPSGRDLSEMRPVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA SG+QGGR+ EIQR+IGRALR+ VD  ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +    +    S  L   VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDVI--SDPLVDPVAAVSCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD NF+MT SG ++EVQ SAE + F++     +L LA+  + +L+  Q    +
Sbjct: 179 EDSEAGVDGNFIMTGSGKLIEVQMSAEGSVFNRAQLDQLLGLAEKGVGELVAAQMAATA 237


>gi|229175161|ref|ZP_04302677.1| Ribonuclease PH [Bacillus cereus MM3]
 gi|228608297|gb|EEK65603.1| Ribonuclease PH [Bacillus cereus MM3]
          Length = 245

 Score =  333 bits (856), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 161/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+  ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGRERTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++     ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 179 VEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238

Query: 240 NEV 242
           + V
Sbjct: 239 DIV 241


>gi|229087047|ref|ZP_04219199.1| Ribonuclease PH [Bacillus cereus Rock3-44]
 gi|228696240|gb|EEL49073.1| Ribonuclease PH [Bacillus cereus Rock3-44]
          Length = 245

 Score =  333 bits (856), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 161/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+  ++R I L     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGREAAELRHIHLHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++     ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEDQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  L++ QK+ + 
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAELNELLDAAEHGILQLVEKQKEALG 238

Query: 240 NEV 242
           + V
Sbjct: 239 DIV 241


>gi|257468117|ref|ZP_05632213.1| ribonuclease PH [Fusobacterium ulcerans ATCC 49185]
 gi|317062402|ref|ZP_07926887.1| ribonuclease PH [Fusobacterium ulcerans ATCC 49185]
 gi|313688078|gb|EFS24913.1| ribonuclease PH [Fusobacterium ulcerans ATCC 49185]
          Length = 254

 Score =  333 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 111/240 (46%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ + +REI +T+  + YAEGS L++FG+T ++ TA++ EKVP ++R    GW+T
Sbjct: 17  LREDGRKVDSLREIKITKDFNLYAEGSVLIEFGNTKVICTASVSEKVPPFMRGQGKGWLT 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+TG R +RE+  G+  GR+ EIQR+IGRALR+ VDL  LG R I IDCDVIQ
Sbjct: 77  AEYSMIPRATGERNQRESAKGKLSGRTMEIQRLIGRALRTAVDLEKLGERTITIDCDVIQ 136

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +I+G ++AL   ++ +    ++      +  +VAAIS G++ G P++DL Y 
Sbjct: 137 ADGGTRTTSISGGFIALALAVKKLMK--DRVLNVNPIVSNVAAISVGIVRGTPMLDLMYT 194

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  +VD N VM   G  VEVQG+ E AT+++     +++LA+  I ++I+LQ +VI  
Sbjct: 195 EDSAAEVDMNVVMNGKGEFVEVQGTGEEATYTRKELNELIDLAEVGIKEIIRLQNEVIGE 254


>gi|326201646|ref|ZP_08191517.1| ribonuclease PH [Clostridium papyrosolvens DSM 2782]
 gi|325988246|gb|EGD49071.1| ribonuclease PH [Clostridium papyrosolvens DSM 2782]
          Length = 240

 Score =  333 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 111/238 (46%), Positives = 159/238 (66%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR   Q+R + + R   K+AEGS L++ GDT ++ TA++EE++P + +++  GWIT
Sbjct: 2   LRHDGRSNTQLRPVRILRNYIKHAEGSVLIEVGDTKVICTASVEERIPPFKKDSGEGWIT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +R+    +  GRS EIQR+IGR+LR++VDL  LG R I +DCDVIQ
Sbjct: 62  AEYSMLPRATAVRNQRDISKLKLNGRSSEIQRLIGRSLRTIVDLKLLGERTITVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +VAL D  + +    N       + G VAA S G++ G  ++DL Y 
Sbjct: 122 ADGGTRTASITGGYVALADACRTLVK--NGLISKTPIIGIVAATSVGIVNGEELLDLCYI 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  +VD N +MTD G  +E+Q + E+++FS+     +LNLA+  I +LIK Q +VI
Sbjct: 180 EDSNAEVDMNVIMTDKGEFIELQATGEKSSFSKKQLDKLLNLAESGIHELIKAQNEVI 237


>gi|221640718|ref|YP_002526980.1| ribonuclease PH [Rhodobacter sphaeroides KD131]
 gi|254808599|sp|B9KPU4|RNPH_RHOSK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|221161499|gb|ACM02479.1| Ribonuclease PH [Rhodobacter sphaeroides KD131]
          Length = 237

 Score =  333 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 127/239 (53%), Positives = 175/239 (73%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ +QMR +S+   V K+AEGSCL++ G+TH+L +A++E+K P +++NT  GW+T
Sbjct: 1   MRPSGRKLDQMRSVSIEPNVMKHAEGSCLIRMGETHVLCSASIEDKPPPFLKNTGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ VD SALG RQI+IDCDV+Q
Sbjct: 61  AEYGMLPRATTSRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +        +S  +  +VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLLKAG--IIVSDPIVDNVAAVSCGIYAGQPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST   D NFV+T    ++EVQ SAE A+FS+D    +L+LA+  IA+L+  QK  + 
Sbjct: 179 EDSTAGTDGNFVLTGRSRMIEVQMSAEGASFSRDEMGQLLDLAEAGIAELVAAQKAALG 237


>gi|261341748|ref|ZP_05969606.1| hypothetical protein ENTCAN_08227 [Enterobacter cancerogenus ATCC
           35316]
 gi|288316116|gb|EFC55054.1| tRNA nucleotidyltransferase [Enterobacter cancerogenus ATCC 35316]
          Length = 238

 Score =  333 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 124/240 (51%), Positives = 163/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPSGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKVLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +         +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKLVAAGKL--KTNPMKGMVAAVSVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +   ++L LA+  I  ++  QK  + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLSLLALARGGIESIVTTQKAALEN 238


>gi|120612226|ref|YP_971904.1| ribonuclease PH [Acidovorax citrulli AAC00-1]
 gi|120590690|gb|ABM34130.1| RNAse PH [Acidovorax citrulli AAC00-1]
          Length = 253

 Score =  333 bits (855), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 118/238 (49%), Positives = 160/238 (67%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R +GR  + +R + +TR  + +AEGS LV+FG T +L TA++EE+VP   R +  GW+TA
Sbjct: 12  RSAGRGVDALRPVRITRHYTMHAEGSVLVEFGHTKVLCTASVEERVPPHKRGSGEGWVTA 71

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V DL ALG R I +DCDV+QA
Sbjct: 72  EYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLRALGERTIQLDCDVLQA 131

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGAWVA HD +  + +       +  +   +AA+S G++ G P++DL+Y E
Sbjct: 132 DGGTRTAAITGAWVAAHDAVSALLE--GGKIAASPITAPLAAVSVGIVQGTPLLDLEYTE 189

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   D D N VM D G  VEVQG+AE   F++     +L+LA   +  LI LQ+  +S
Sbjct: 190 DVQCDTDMNVVMMDGGRFVEVQGTAEGIAFTRSEMDRLLDLAARGVDALIALQRQALS 247


>gi|238063132|ref|ZP_04607841.1| ribonuclease PH [Micromonospora sp. ATCC 39149]
 gi|237884943|gb|EEP73771.1| ribonuclease PH [Micromonospora sp. ATCC 39149]
          Length = 241

 Score =  333 bits (855), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 113/239 (47%), Positives = 158/239 (66%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R ++L+R  S + EGS LV+FG T +L TA++ E VP W + +  GW+TA
Sbjct: 3   RPDGRLPDQLRPVTLSRGWSTHPEGSVLVEFGGTRVLCTASVTEGVPRWRKGSGLGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+ +DL ALG   +++DCDV+QA
Sbjct: 63  EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRASIDLKALGENSVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKF-QLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTAA+TGA+VALHD +  +        +  +V+   VAA+S G++ G   +DL Y 
Sbjct: 123 DGGTRTAAVTGAYVALHDAVSWLAARKALAGKPEKVMHRSVAAVSVGVIAGEARLDLCYE 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED   +VD N V T SG  VEVQG+ E   F++D   A+L+LA    A+L + Q+  +S
Sbjct: 183 EDVAAEVDMNVVCTGSGEFVEVQGTGESGVFARDQLDALLDLAVAGCAELAEAQRKALS 241


>gi|297529172|ref|YP_003670447.1| ribonuclease PH [Geobacillus sp. C56-T3]
 gi|297252424|gb|ADI25870.1| ribonuclease PH [Geobacillus sp. C56-T3]
          Length = 460

 Score =  333 bits (855), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 118/241 (48%), Positives = 154/241 (63%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR   ++R + +     K+AEGS L++ GDT ++ TAT+EEKVP ++R    GWIT
Sbjct: 1   MRADGRSSCELRPVHIHPHYMKHAEGSVLIEIGDTKVICTATVEEKVPSFMRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+  GR+ EIQR+IGRALRSVVDL  LG R I IDCDVIQ
Sbjct: 61  AEYGMLPRATEQRNVREASKGKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VAL   L  + +      L   ++  +AA S G+   +  I+DLDY
Sbjct: 121 ADGGTRTASITGAYVALVLALAKLVEEGKLEAL--PIRDFLAATSVGIDPEHGVILDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED+   VD N VMT +G  VE+QG+ E A FS+     +L  A+  I  LI +Q+  + 
Sbjct: 179 NEDARAKVDMNVVMTGAGQFVEIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQRCALG 238

Query: 240 N 240
            
Sbjct: 239 E 239


>gi|114762203|ref|ZP_01441671.1| ribonuclease PH [Pelagibaca bermudensis HTCC2601]
 gi|114545227|gb|EAU48230.1| ribonuclease PH [Roseovarius sp. HTCC2601]
          Length = 237

 Score =  333 bits (855), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 128/239 (53%), Positives = 173/239 (72%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  ++MR +S+   V+K+AEGSCL+K GDTH++ TA+LE +VP +I+ +  GW+T
Sbjct: 1   MRPSGRDLSEMRPVSIETGVTKHAEGSCLIKMGDTHVICTASLEPRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R++REA +G+QGGR+ EIQR+IGR+LR+ VD  ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMRREATTGKQGGRTVEIQRLIGRSLRAGVDRVALGERQISVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR AAITG WVAL   +  +    +    +  L   VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCAAITGGWVALRLAVNKLMKAGDVI--TDPLISPVAAVSCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD NF++   G ++EVQ SAE ATFS+D    +L+LA+  +A L++ QK   +
Sbjct: 179 EDSEAGVDGNFILRGDGQLIEVQMSAEGATFSRDQMGTLLDLAESGVAQLVEAQKAATA 237


>gi|260429579|ref|ZP_05783556.1| ribonuclease PH [Citreicella sp. SE45]
 gi|260420202|gb|EEX13455.1| ribonuclease PH [Citreicella sp. SE45]
          Length = 296

 Score =  333 bits (855), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 127/239 (53%), Positives = 173/239 (72%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  ++MR +S+   ++K+AEGSCL+K GDT ++ TA+LEE+VP +I+ +  GW+T
Sbjct: 60  MRPSGRHLSEMRTVSIETGITKHAEGSCLIKVGDTQVICTASLEERVPPFIKGSGLGWVT 119

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R++REA SG+QGGR+ EIQR+IGR+LR+ VD  ALG RQI IDCDVIQ
Sbjct: 120 AEYGMLPRSTGSRMRREATSGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITIDCDVIQ 179

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +    +    +  L   VAA+SCG+  G PI+DLDY 
Sbjct: 180 ADGGTRCASITGGWVALRLAVNKLMKAGDV--KTDPLVSPVAAVSCGIYAGQPILDLDYP 237

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD NF++   G ++EVQ SAE ATFS+     +++LA+  +A L++ QK  ++
Sbjct: 238 EDSEAGVDGNFILRGDGQLIEVQMSAEGATFSRAQMSELMDLAEKGVAQLVEAQKAAVA 296


>gi|227552907|ref|ZP_03982956.1| tRNA nucleotidyltransferase [Enterococcus faecalis HH22]
 gi|227177961|gb|EEI58933.1| tRNA nucleotidyltransferase [Enterococcus faecalis HH22]
          Length = 316

 Score =  333 bits (855), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   ++R+I++   V K+ EGS ++ FGDT ++ +AT+EEKVP ++R    GW+ 
Sbjct: 2   IRHDSRAPKELRKITIETNVFKHPEGSVVISFGDTKVICSATVEEKVPPFLRGGGTGWVA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I++DCDVIQ
Sbjct: 62  AEYSMLPRATNTRNIRESAKGKLTGRTMEIQRLIGRSLRAVVDLEKLGERSIVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   + H+            +K H+AA+S G+L  GY ++DLDY
Sbjct: 122 ADGGTRTASITGAFVALRLAVNHL--LMTGALAEDPIKEHLAAVSVGILPDGYCVLDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  VE+QG+ E ATFS D   AML   K  I +LI  QK+ +
Sbjct: 180 AEDSNAAVDMNIVMTESGEFVEIQGTGEEATFSGDELNAMLFYGKTGIEELIAYQKEAL 238


>gi|292486561|ref|YP_003529429.1| ribonuclease PH [Erwinia amylovora CFBP1430]
 gi|292897799|ref|YP_003537168.1| ribonuclease PH [Erwinia amylovora ATCC 49946]
 gi|291197647|emb|CBJ44742.1| ribonuclease PH [Erwinia amylovora ATCC 49946]
 gi|291551976|emb|CBA19013.1| ribonuclease PH [Erwinia amylovora CFBP1430]
 gi|312170622|emb|CBX78885.1| ribonuclease PH [Erwinia amylovora ATCC BAA-2158]
          Length = 238

 Score =  333 bits (855), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 123/238 (51%), Positives = 163/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GW+T
Sbjct: 1   MRPSGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATIEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ +DL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L H+         +  +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNHLVFIGKL--KANPMKGMVAAISVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VMT+ G ++EVQG+AE   FS +    +L LA+  I  L+  QK  +
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLKLLELARGGIDTLVAAQKAAL 236


>gi|88797478|ref|ZP_01113067.1| ribonuclease PH [Reinekea sp. MED297]
 gi|88779650|gb|EAR10836.1| ribonuclease PH [Reinekea sp. MED297]
          Length = 239

 Score =  333 bits (855), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 116/240 (48%), Positives = 163/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ +Q+RE++L R  +K+AEGS LV FGDT ++ TA+++  VP +++    GW+T
Sbjct: 1   MRPSGRQTDQLREVTLQRHFTKHAEGSVLVSFGDTQVICTASVDSGVPRFMKGEGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG+R +REA  G+Q GR+ EI R+IGR+LR+ +D+  LG   + IDCDVIQ
Sbjct: 61  AEYGMLPRATGSRNQREAARGKQTGRTVEIGRLIGRSLRAAIDMELLGENTVTIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D +  M   +        +K +VAA+S G+     ++DLDY 
Sbjct: 121 ADGGTRTASITGAFVALSDAINGM--LAEGTLKKNPIKHNVAAVSVGIWQDTAVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDST + D N V+  +G  VE+QG+AE   F  D   AML+LA+    DL ++Q   ++ 
Sbjct: 179 EDSTAETDLNVVLASNGGFVEIQGTAEGEPFMPDQLKAMLDLAEKGGRDLFEIQNRALTE 238


>gi|315079375|gb|EFT51373.1| ribonuclease PH [Propionibacterium acnes HL053PA2]
          Length = 254

 Score =  333 bits (855), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 110/238 (46%), Positives = 155/238 (65%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ + R     AEGS LV FG T +L  A++ E VP W + +  GW+TA
Sbjct: 16  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+ GGR+ EI R++GR+LR+VVD  ALG   II+DCDV+QA
Sbjct: 76  EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +        +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALVDAVNWLR--GRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEE 193

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VM+ SG  VE+QG+AE   F+++    +L+LA    A L + Q + + 
Sbjct: 194 DSRADTDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLASGGCATLKQAQSEALG 251


>gi|194017374|ref|ZP_03055986.1| ribonuclease PH [Bacillus pumilus ATCC 7061]
 gi|194011242|gb|EDW20812.1| ribonuclease PH [Bacillus pumilus ATCC 7061]
          Length = 242

 Score =  333 bits (855), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 110/243 (45%), Positives = 159/243 (65%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MRL  R  +++R+I +      + EGS L+  G+T ++  A++E++VP ++R    GWIT
Sbjct: 1   MRLDERHYDELRKIEIEAGYITHPEGSVLISAGNTKVICNASIEDRVPPFLRGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL  LG R I IDCDVIQ
Sbjct: 61  AEYSMLPRATAQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VA+   +Q +   +        +  ++AAIS G+      ++DL+Y
Sbjct: 121 ADGGTRTASITGAFVAMTLAIQKLR--AEGVIKQNPITDYLAAISVGIDSQQGLLLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS+ +VD N +MT +G  VE+QG+ E ATFS++    +L+LA+  I +LI+ QK V  
Sbjct: 179 EEDSSAEVDMNVIMTGAGRFVELQGTGEEATFSREQLNGLLDLAEKGIKELIEKQKAVTG 238

Query: 240 NEV 242
             +
Sbjct: 239 EVI 241


>gi|319651759|ref|ZP_08005885.1| ribonuclease PH [Bacillus sp. 2_A_57_CT2]
 gi|317396578|gb|EFV77290.1| ribonuclease PH [Bacillus sp. 2_A_57_CT2]
          Length = 256

 Score =  333 bits (855), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 115/243 (47%), Positives = 158/243 (65%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+  Q+R I +     K+ EGS L+  GDT ++ TA+++E+VP ++R    GWIT
Sbjct: 1   MRADGREPKQLRPIHIESDYLKHPEGSVLITVGDTKVICTASIDERVPPFMRGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + +DCDVIQ
Sbjct: 61  AEYSMLPRATEQRNIRESAKGKISGRTMEIQRLIGRALRAVVDLDALGERTVWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDY 179
           ADGGTRTA+ITGA+VA+   +  +   S+K      +   +AA S G+L      VDL+Y
Sbjct: 121 ADGGTRTASITGAFVAMSQAMDKL--YSSKKLAHYPINDFLAATSVGILKNKQAAVDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS+ +VD N VMT SG  VE+QG+ E ATFS      ML  A++ I++L + QK  + 
Sbjct: 179 IEDSSAEVDMNVVMTGSGEFVELQGTGEEATFSYTQLQEMLGAAQEGISELFEFQKAALG 238

Query: 240 NEV 242
            ++
Sbjct: 239 EKI 241


>gi|157373079|ref|YP_001481068.1| ribonuclease PH [Serratia proteamaculans 568]
 gi|166991086|sp|A8GLF0|RNPH_SERP5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157324843|gb|ABV43940.1| ribonuclease PH [Serratia proteamaculans 568]
          Length = 238

 Score =  333 bits (855), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPAGRAPQQVRPLTLTRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +   +N    +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNAL--VANGKLKANPMKGLVAAVSVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS D   A+L LA+  I  + + QK  +++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELLALLALARGGIDTIFQAQKAALAD 238


>gi|289427808|ref|ZP_06429517.1| tRNA nucleotidyltransferase [Propionibacterium acnes J165]
 gi|295131196|ref|YP_003581859.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK137]
 gi|289158990|gb|EFD07185.1| tRNA nucleotidyltransferase [Propionibacterium acnes J165]
 gi|291375935|gb|ADD99789.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK137]
 gi|313773261|gb|EFS39227.1| ribonuclease PH [Propionibacterium acnes HL074PA1]
 gi|313793456|gb|EFS41507.1| ribonuclease PH [Propionibacterium acnes HL110PA1]
 gi|313801145|gb|EFS42408.1| ribonuclease PH [Propionibacterium acnes HL110PA2]
 gi|313808494|gb|EFS46959.1| ribonuclease PH [Propionibacterium acnes HL087PA2]
 gi|313812067|gb|EFS49781.1| ribonuclease PH [Propionibacterium acnes HL083PA1]
 gi|313812337|gb|EFS50051.1| ribonuclease PH [Propionibacterium acnes HL025PA1]
 gi|313819229|gb|EFS56943.1| ribonuclease PH [Propionibacterium acnes HL046PA2]
 gi|313821099|gb|EFS58813.1| ribonuclease PH [Propionibacterium acnes HL036PA1]
 gi|313823475|gb|EFS61189.1| ribonuclease PH [Propionibacterium acnes HL036PA2]
 gi|313827022|gb|EFS64736.1| ribonuclease PH [Propionibacterium acnes HL063PA1]
 gi|313829864|gb|EFS67578.1| ribonuclease PH [Propionibacterium acnes HL007PA1]
 gi|313834706|gb|EFS72420.1| ribonuclease PH [Propionibacterium acnes HL056PA1]
 gi|313837925|gb|EFS75639.1| ribonuclease PH [Propionibacterium acnes HL086PA1]
 gi|314925916|gb|EFS89747.1| ribonuclease PH [Propionibacterium acnes HL036PA3]
 gi|314960891|gb|EFT04992.1| ribonuclease PH [Propionibacterium acnes HL002PA2]
 gi|314963345|gb|EFT07445.1| ribonuclease PH [Propionibacterium acnes HL082PA1]
 gi|314974022|gb|EFT18118.1| ribonuclease PH [Propionibacterium acnes HL053PA1]
 gi|314975448|gb|EFT19543.1| ribonuclease PH [Propionibacterium acnes HL045PA1]
 gi|314979453|gb|EFT23547.1| ribonuclease PH [Propionibacterium acnes HL072PA2]
 gi|314984208|gb|EFT28300.1| ribonuclease PH [Propionibacterium acnes HL005PA1]
 gi|314988437|gb|EFT32528.1| ribonuclease PH [Propionibacterium acnes HL005PA2]
 gi|314988644|gb|EFT32735.1| ribonuclease PH [Propionibacterium acnes HL005PA3]
 gi|315083401|gb|EFT55377.1| ribonuclease PH [Propionibacterium acnes HL027PA2]
 gi|315086804|gb|EFT58780.1| ribonuclease PH [Propionibacterium acnes HL002PA3]
 gi|315089451|gb|EFT61427.1| ribonuclease PH [Propionibacterium acnes HL072PA1]
 gi|315097778|gb|EFT69754.1| ribonuclease PH [Propionibacterium acnes HL038PA1]
 gi|327325397|gb|EGE67202.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL096PA2]
 gi|327328264|gb|EGE70028.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL096PA3]
 gi|327443690|gb|EGE90344.1| ribonuclease PH [Propionibacterium acnes HL043PA1]
 gi|327449227|gb|EGE95881.1| ribonuclease PH [Propionibacterium acnes HL043PA2]
 gi|327450179|gb|EGE96833.1| ribonuclease PH [Propionibacterium acnes HL013PA2]
 gi|327451243|gb|EGE97897.1| ribonuclease PH [Propionibacterium acnes HL092PA1]
 gi|328756765|gb|EGF70381.1| ribonuclease PH [Propionibacterium acnes HL020PA1]
 gi|328761039|gb|EGF74591.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL099PA1]
 gi|332676073|gb|AEE72889.1| ribonuclease PH [Propionibacterium acnes 266]
          Length = 254

 Score =  333 bits (854), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 110/238 (46%), Positives = 155/238 (65%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ + R     AEGS LV FG T +L  A++ E VP W + +  GW+TA
Sbjct: 16  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+ GGR+ EI R++GR+LR+VVD  ALG   II+DCDV+QA
Sbjct: 76  EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +        +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALVDAVNWLR--GRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEE 193

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VM+ SG  VE+QG+AE   F+++    +L+LA    A L + Q + + 
Sbjct: 194 DSRADTDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 251


>gi|152972490|ref|YP_001337636.1| ribonuclease PH [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|206579777|ref|YP_002235994.1| ribonuclease PH [Klebsiella pneumoniae 342]
 gi|238897086|ref|YP_002921832.1| ribonuclease PH [Klebsiella pneumoniae NTUH-K2044]
 gi|290511794|ref|ZP_06551162.1| ribonuclease PH [Klebsiella sp. 1_1_55]
 gi|166228287|sp|A6TFN5|RNPH_KLEP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736914|sp|B5XTF9|RNPH_KLEP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|150957339|gb|ABR79369.1| ribonuclease PH [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|206568835|gb|ACI10611.1| ribonuclease PH [Klebsiella pneumoniae 342]
 gi|238549414|dbj|BAH65765.1| ribonuclease PH [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|289775584|gb|EFD83584.1| ribonuclease PH [Klebsiella sp. 1_1_55]
          Length = 238

 Score =  333 bits (854), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 125/240 (52%), Positives = 163/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA+++E VP +++    GWIT
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +         +  +KG VAA+S G++ G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKLVAAGKL--KTNPMKGMVAAVSVGIVNGEAICDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  +I  QK  + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIITTQKAALEN 238


>gi|167947111|ref|ZP_02534185.1| ribonuclease PH [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 239

 Score =  333 bits (854), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 127/223 (56%), Positives = 165/223 (73%), Gaps = 2/223 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ +Q+R I  TR  +K+AEGS LV+FGDT ++ TA++EE+VP W+R    GW+T
Sbjct: 1   MRPSGRQPDQLRPIRFTRHYTKHAEGSVLVEFGDTKVICTASVEERVPGWMRGQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+IGR+LR+ +DL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTDSRMGREASRGKQGGRTMEIQRLIGRSLRAAIDLQALGERSIALDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAW+ALHD +QH+         +  + G VA++S G+  G PI+DLDY 
Sbjct: 121 ADGGTRTASITGAWIALHDAVQHI--LQQDLLKTDPMIGPVASVSVGVHKGTPILDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           EDS+ + D N VM D G  +EVQG+AE A +S+    AML+LA
Sbjct: 179 EDSSAETDMNVVMNDQGGFIEVQGTAEAAAYSRQELDAMLDLA 221


>gi|323359606|ref|YP_004226002.1| RNase PH [Microbacterium testaceum StLB037]
 gi|323275977|dbj|BAJ76122.1| RNase PH [Microbacterium testaceum StLB037]
          Length = 241

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 113/239 (47%), Positives = 154/239 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R +++ R  S +AEGS L+ FG T +L TA+    VP W+     GW+TA
Sbjct: 3   RKDGRTTDQLRPVTIERGWSAHAEGSALITFGGTKVLCTASFTNGVPRWLTGKGKGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T +R  RE++ G+ GGR+ EI R+IGRALR+VVD  ALG   I+IDCDV+QA
Sbjct: 63  EYAMLPRATNSRNDRESIKGKVGGRTHEISRLIGRALRAVVDTKALGENTIVIDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +    +     Q S+VL   V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAIAWGREKKFIAQRSEVLIDSVSAVSVGIIDGEPMLDLAYVE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   + D N V+T  G  VEVQG+AE A F +     +L+LA +  A+L  +Q   +  
Sbjct: 183 DVRAETDMNVVVTGRGLFVEVQGTAEGAPFDKAELDRLLDLAVNGCAELRGIQTAALEG 241


>gi|161611257|ref|YP_296683.2| ribonuclease PH [Ralstonia eutropha JMP134]
          Length = 239

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 128/239 (53%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  + +R ISLTR  +++AEGS L  FGDT +L TA++  KVP   + +  GW+T
Sbjct: 1   MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHKKGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRA+RSV DL+ALG   + +DCDV+Q
Sbjct: 61  AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTLHLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VA HD +  M    +    +  ++  VAA+S GM+ G P++DLDY 
Sbjct: 121 ADGGTRTAAITGAFVAAHDAISTM--LRDGLIAASPIRDFVAAVSVGMVDGVPLLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT SG  VEVQG+AE A FS+    AM  LA+D IA L++ Q+  + 
Sbjct: 179 EDSNCDTDMNVVMTGSGGFVEVQGTAEGAAFSRADLDAMTRLAEDGIAQLVRHQRQALG 237


>gi|16762575|ref|NP_458192.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|16767019|ref|NP_462634.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29144064|ref|NP_807406.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56415624|ref|YP_152699.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161505731|ref|YP_001572843.1| ribonuclease PH [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|167549018|ref|ZP_02342777.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167995207|ref|ZP_02576297.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168233258|ref|ZP_02658316.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168235339|ref|ZP_02660397.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168241913|ref|ZP_02666845.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168260512|ref|ZP_02682485.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|168464958|ref|ZP_02698850.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168818436|ref|ZP_02830436.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194442896|ref|YP_002042983.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194448918|ref|YP_002047765.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194469845|ref|ZP_03075829.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194735193|ref|YP_002116668.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197249680|ref|YP_002148665.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197264642|ref|ZP_03164716.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197364551|ref|YP_002144188.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|198242269|ref|YP_002217694.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|200388670|ref|ZP_03215282.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204928479|ref|ZP_03219678.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|207858971|ref|YP_002245622.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213052654|ref|ZP_03345532.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|213425224|ref|ZP_03357974.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213615659|ref|ZP_03371485.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
 gi|213647931|ref|ZP_03377984.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
 gi|213852853|ref|ZP_03382385.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
 gi|238910231|ref|ZP_04654068.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289809748|ref|ZP_06540377.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
 gi|289824115|ref|ZP_06543712.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|61234148|sp|P0A2C3|RNPH_SALTY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61234155|sp|P0A2C4|RNPH_SALTI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|81599223|sp|Q5PC25|RNPH_SALPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043772|sp|A9MKN2|RNPH_SALAR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736931|sp|B5EXE7|RNPH_SALA4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736932|sp|B5FM66|RNPH_SALDC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736933|sp|B5R5G7|RNPH_SALEP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736935|sp|B4T9Y6|RNPH_SALHS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736936|sp|B4SXE4|RNPH_SALNS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736937|sp|B5BI17|RNPH_SALPK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736938|sp|B4TZY4|RNPH_SALSV RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|25289292|pir||AG0970 RNase PH [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16422302|gb|AAL22593.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16504880|emb|CAD03259.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29139700|gb|AAO71266.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56129881|gb|AAV79387.1| RNase PH [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|160867078|gb|ABX23701.1| hypothetical protein SARI_03907 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|194401559|gb|ACF61781.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194407222|gb|ACF67441.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194456209|gb|EDX45048.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194710695|gb|ACF89916.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195632399|gb|EDX50883.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197096028|emb|CAR61615.1| RNase PH [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|197213383|gb|ACH50780.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197242897|gb|EDY25517.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197291458|gb|EDY30810.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197936785|gb|ACH74118.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|199605768|gb|EDZ04313.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204321912|gb|EDZ07110.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205325541|gb|EDZ13380.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205327076|gb|EDZ13840.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205332556|gb|EDZ19320.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205338962|gb|EDZ25726.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205344359|gb|EDZ31123.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205350221|gb|EDZ36852.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|206710774|emb|CAR35135.1| RNase PH [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|261248882|emb|CBG26736.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|267995995|gb|ACY90880.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160271|emb|CBW19794.1| RNase PH [Salmonella enterica subsp. enterica serovar Typhimurium
           str. SL1344]
 gi|312914760|dbj|BAJ38734.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320088154|emb|CBY97916.1| RNase PH [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321226787|gb|EFX51837.1| Ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322612900|gb|EFY09852.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618965|gb|EFY15852.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625258|gb|EFY22085.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322630074|gb|EFY26847.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322634266|gb|EFY31001.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635833|gb|EFY32542.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322643029|gb|EFY39606.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322645043|gb|EFY41574.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649857|gb|EFY46280.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322653064|gb|EFY49399.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322661117|gb|EFY57345.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662394|gb|EFY58607.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322667272|gb|EFY63438.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322674351|gb|EFY70444.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322678441|gb|EFY74502.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322680947|gb|EFY76981.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322687117|gb|EFY83090.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323132094|gb|ADX19524.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323195841|gb|EFZ81013.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323198242|gb|EFZ83348.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323200860|gb|EFZ85930.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323206614|gb|EFZ91572.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323210473|gb|EFZ95359.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216239|gb|EGA00967.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323220461|gb|EGA04915.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225325|gb|EGA09559.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323228439|gb|EGA12570.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323234260|gb|EGA18348.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323237245|gb|EGA21312.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323244764|gb|EGA28768.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323245861|gb|EGA29851.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323250956|gb|EGA34832.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323257296|gb|EGA40995.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323262220|gb|EGA45781.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323264569|gb|EGA48073.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323268858|gb|EGA52316.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326625479|gb|EGE31824.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
 gi|332990583|gb|AEF09566.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 238

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 126/240 (52%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   +N    +  +KG VAA+S G++ G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   FS +    +L LA+  I  ++  QK  + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 238


>gi|218232088|ref|YP_002369288.1| ribonuclease PH [Bacillus cereus B4264]
 gi|226736886|sp|B7HEB3|RNPH_BACC4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|218160045|gb|ACK60037.1| tRNA nucleotidyltransferase [Bacillus cereus B4264]
          Length = 245

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++ ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGREKIELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G++     ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGIVEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  LI +QK+ + 
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDMQKEALG 238

Query: 240 NEV 242
           + V
Sbjct: 239 DIV 241


>gi|261377578|ref|ZP_05982151.1| tRNA nucleotidyltransferase [Neisseria cinerea ATCC 14685]
 gi|269146325|gb|EEZ72743.1| tRNA nucleotidyltransferase [Neisseria cinerea ATCC 14685]
          Length = 242

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 116/234 (49%), Positives = 168/234 (71%), Gaps = 2/234 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  + +R+I +T     + +GSCL++ G+T ++ TA+++E VP ++R    GW+TAEYGM
Sbjct: 9   RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVTAEYGM 68

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADGGT
Sbjct: 69  LPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGGT 128

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTA+ITGA+VALH  +  +   S+       ++  VAAIS G++ G P++DLDY EDS  
Sbjct: 129 RTASITGAFVALHIAVGKL--ISDGILTENPIREAVAAISVGIVGGVPLLDLDYPEDSGC 186

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D D N VMT SG I+E+QG+AE A FS +    ++ LA+  I +L++ Q++ +S
Sbjct: 187 DSDVNIVMTASGKIIEIQGTAEGAPFSLEELGKLIGLAEQGIRELVRYQQNALS 240


>gi|85706900|ref|ZP_01037990.1| ribonuclease PH [Roseovarius sp. 217]
 gi|85668511|gb|EAQ23382.1| ribonuclease PH [Roseovarius sp. 217]
          Length = 238

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 127/237 (53%), Positives = 172/237 (72%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  ++MR +S+   V K+AEGSCL+K GDTH+L TAT+EE+VP +++ +  GW+T
Sbjct: 1   MRPSGRNLSEMRPVSIETGVLKHAEGSCLIKIGDTHVLCTATIEERVPPFVKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA +G+QGGR+ EIQR+IGR+LR+ VD  ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRSTNSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +Q +    +    S  L   VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALKLAVQKLMKAGDVI--SDPLIDPVAAVSCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS   VD NF+MT S  ++EVQ SAE +T+S+D    +L+LA+  +  L+  Q++ 
Sbjct: 179 EDSEAGVDGNFIMTGSKRLIEVQMSAEGSTYSRDQMNTLLDLAEQGVDLLVAKQREA 235


>gi|317403008|gb|EFV83546.1| ribonuclease PH [Achromobacter xylosoxidans C54]
          Length = 244

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 120/238 (50%), Positives = 165/238 (69%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +++R  SL R  ++YAEGS LVK G+TH+L TA++ EKVP +++    GW+TA
Sbjct: 9   RPSGRAVDELRPFSLERGFTRYAEGSVLVKAGNTHVLCTASVLEKVPPFLKGKGEGWVTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V D+ ALG R + +DCDV+QA
Sbjct: 69  EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMRALGERTLHLDCDVLQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+ITGAWVA  D +  +    +       ++  VAA+S G++ G P++DLDY E
Sbjct: 129 DGGTRCASITGAWVAASDAVALLMQRGDLAV--NPIRDAVAAVSVGLVQGRPVLDLDYEE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N +MT  G  VEVQG+ E ATF++    AML LA++ IA L++ Q+  ++
Sbjct: 187 DSACDADVNVIMTGGGAFVEVQGTGEGATFTRAELDAMLGLAENGIAGLVRAQRAALA 244


>gi|170728887|ref|YP_001762913.1| ribonuclease PH [Shewanella woodyi ATCC 51908]
 gi|226736940|sp|B1KL12|RNPH_SHEWM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|169814234|gb|ACA88818.1| ribonuclease PH [Shewanella woodyi ATCC 51908]
          Length = 237

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 164/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R   Q R +++TR+ + +AEGS LV+FG+T +L TA+  E VP +++    GW+T
Sbjct: 1   MRPNDRTPAQSRPVTITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+Q GR+QEIQR+IGR+LR+ VD+ ALG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRSLRAAVDMKALGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D L            +  LK  +AA+S G+  G PI DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGILKNNPLKFLIAAVSVGIYKGEPICDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G ++E+QG+AE   FS +   ++L LAK  I +++ +QK  +S
Sbjct: 179 EDSEAETDMNVVMTETGKMIEIQGTAEGEPFSHEELLSLLELAKHGIREIVDVQKAALS 237


>gi|288933001|ref|YP_003437060.1| ribonuclease PH [Klebsiella variicola At-22]
 gi|288887730|gb|ADC56048.1| ribonuclease PH [Klebsiella variicola At-22]
          Length = 238

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 125/240 (52%), Positives = 163/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA+++E VP +++    GWIT
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +         +  +KG VAA+S G++ G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKLAAAGKL--KTNPMKGMVAAVSVGIVNGEAICDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  +I  QK  + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIITTQKAALEN 238


>gi|310286881|ref|YP_003938139.1| rph Ribonuclease PH [Bifidobacterium bifidum S17]
 gi|309250817|gb|ADO52565.1| rph Ribonuclease PH [Bifidobacterium bifidum S17]
          Length = 243

 Score =  332 bits (853), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 109/239 (45%), Positives = 155/239 (64%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +++R + +TR  +   EGS L++ G+T ++ TAT    VP W +++  GW+T
Sbjct: 3   IRADGRVVDELRPVRITRHFTDVPEGSVLIECGNTRVMCTATFTPSVPRWRKDSGLGWVT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR VVD+ ALG  QI IDCDV+Q
Sbjct: 63  AEYSMLPRATAERTDRESVRGKVGGRTHEISRLIGRCLRGVVDMKALGENQIQIDCDVLQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D ++  E   +     +VLK  V+A+S G++ G P++DL Y 
Sbjct: 123 ADGGTRTASITGAYVALVDAMRWAEQKRHIRSADRVLKDAVSAVSVGVINGTPMLDLPYI 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N  MT SG  +E+QG+AE   F++     +L+LA+    +L   Q+  +S
Sbjct: 183 EDSQAMTDMNVAMTGSGDFIEIQGTAEHRPFNRAELNTLLDLAEKGNKELQAAQRAALS 241


>gi|295691344|ref|YP_003595037.1| ribonuclease PH [Caulobacter segnis ATCC 21756]
 gi|295433247|gb|ADG12419.1| ribonuclease PH [Caulobacter segnis ATCC 21756]
          Length = 238

 Score =  332 bits (853), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 129/240 (53%), Positives = 174/240 (72%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +QMR ++L   V++YAEGSCL+ FG T +L TAT+EE +P W+RN   GW+T
Sbjct: 1   MRPSERAPDQMRAVTLETGVNRYAEGSCLISFGHTKVLVTATVEESLPGWLRNKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRGRREAAAGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVVQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVAL    +++ D       +  + G VAA+SCG+    P++DLDY 
Sbjct: 121 ADGGTRTAAITGAWVALRLATKYLLD--EGVLKTDPIVGQVAAVSCGVFNDTPVLDLDYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS+ + D+NFV+T++G IVE+Q + E+  FS+  F A+  LA+  I +L  LQ+  I  
Sbjct: 179 EDSSAEADSNFVLTNAGDIVEIQATGEKRGFSRAEFEALFGLAEKGIGELFTLQRAAIGG 238


>gi|227833921|ref|YP_002835628.1| ribonuclease PH [Corynebacterium aurimucosum ATCC 700975]
 gi|262184924|ref|ZP_06044345.1| ribonuclease PH [Corynebacterium aurimucosum ATCC 700975]
 gi|227454937|gb|ACP33690.1| ribonuclease PH [Corynebacterium aurimucosum ATCC 700975]
          Length = 242

 Score =  332 bits (853), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 102/238 (42%), Positives = 153/238 (64%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R + +TR  +    GS LV+FG+T ++ TA++E  VP + +++  GW+TA
Sbjct: 6   RADGRALDQLRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEFGVPRFKKDSGEGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R+ RE++ G+  GR+ EI R++GR+LR+ VDLS LG   I +DCDV+QA
Sbjct: 66  EYAMLPSATHERMPRESMKGKVKGRTHEISRLVGRSLRAAVDLSELGENTIQLDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D + ++++        + L   +AA+S G++ G+  +DL Y E
Sbjct: 126 DGGTRTASITGAYVALADAIAYLKE--EGVVPGEPLLDPIAAVSVGIIDGHVCLDLPYEE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N VM + G  VE+QG+ E   F +     ML++A+   A LI  QK  + 
Sbjct: 184 DSRAEVDLNVVMQEGGDFVEIQGTGEHGLFGRAELNDMLDVAQAGCAQLIDAQKAALG 241


>gi|254295455|ref|YP_003061478.1| ribonuclease PH [Hirschia baltica ATCC 49814]
 gi|254043986|gb|ACT60781.1| ribonuclease PH [Hirschia baltica ATCC 49814]
          Length = 243

 Score =  332 bits (853), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 131/239 (54%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R S R    +RE+SL    S+YAEGSCLVKFG TH+L TA+    VP W++ T  GW+TA
Sbjct: 6   RPSKRAPESLREVSLEVGKSRYAEGSCLVKFGHTHVLCTASWTGDVPRWMKGTGKGWVTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R +REA +G+Q GR+QEIQR+IGRALRSV DL ALG  QI IDCDVIQA
Sbjct: 66  EYGMLPRATHTRGRREAAAGKQSGRTQEIQRLIGRALRSVTDLEALGENQITIDCDVIQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITG +VAL   + ++++       +  L    AAISCG+    P++DLDY E
Sbjct: 126 DGGTRTAAITGGYVALALAINYLKE--EGIISTNPLVSQAAAISCGVYQDVPVLDLDYAE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS   VDANF+M+  G I+EVQG+ E   FS++ F AM +LA     +L  LQK  I N
Sbjct: 184 DSNAMVDANFIMSSDGRIIEVQGTGEERPFSREEFLAMSDLADAGCKELFALQKAAIDN 242


>gi|261400742|ref|ZP_05986867.1| tRNA nucleotidyltransferase [Neisseria lactamica ATCC 23970]
 gi|269209512|gb|EEZ75967.1| tRNA nucleotidyltransferase [Neisseria lactamica ATCC 23970]
          Length = 242

 Score =  332 bits (853), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 116/234 (49%), Positives = 168/234 (71%), Gaps = 2/234 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  + +R+I +T     + +GSCL++ G+T ++ TA+++E VP ++R    GW+TAEYGM
Sbjct: 9   RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVTAEYGM 68

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADGGT
Sbjct: 69  LPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGGT 128

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTA+ITGA+VALH  +  +   S+       ++  VAAIS G++ G P++DLDY EDS  
Sbjct: 129 RTASITGAFVALHIAVGKL--ISDGILTENPIREAVAAISAGIVGGVPLLDLDYPEDSGC 186

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D D N VMT SG I+E+QG+AE A FS +    ++ LA+  I +L++ Q++ +S
Sbjct: 187 DSDVNIVMTASGKIIEIQGTAEGAPFSLEELGKLIGLAEKGIGELLRYQQNALS 240


>gi|296118694|ref|ZP_06837270.1| tRNA nucleotidyltransferase [Corynebacterium ammoniagenes DSM
           20306]
 gi|295968183|gb|EFG81432.1| tRNA nucleotidyltransferase [Corynebacterium ammoniagenes DSM
           20306]
          Length = 242

 Score =  332 bits (853), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 107/238 (44%), Positives = 158/238 (66%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R + +TR  +    GS LV+FG+T ++ TA++E+ VP + +++  GW+TA
Sbjct: 6   RADGRDLDQLRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEQGVPRFKKDSGEGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R+ RE++ G+  GR+ EI R+IGR+LR+ VDLSALG   I +DCDV+QA
Sbjct: 66  EYAMLPSATHDRMPRESMKGKVKGRTHEISRLIGRSLRAAVDLSALGENTIQLDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +++        + L   +AA+S GM+ G   +DL Y E
Sbjct: 126 DGGTRTASITGAYVALADAIAVLKE--QGVVPGEPLLQPIAAVSVGMVEGNVCLDLPYEE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N VM +SG+ VEVQG+ E   F +D   AML++A+    +LI  Q+  + 
Sbjct: 184 DSRAEVDLNVVMQESGNFVEVQGTGENGLFGRDELNAMLDVAQKGCVELIAAQRAALG 241


>gi|302391286|ref|YP_003827106.1| RNAse PH [Acetohalobium arabaticum DSM 5501]
 gi|302203363|gb|ADL12041.1| RNAse PH [Acetohalobium arabaticum DSM 5501]
          Length = 251

 Score =  332 bits (852), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 114/241 (47%), Positives = 164/241 (68%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR  +++RE+++TR  +KYAEGS L+  GDT ++  A++EE VP ++R+   GWIT
Sbjct: 1   MRVDGRDRDELREVTITRDFTKYAEGSILISTGDTKVICNASVEESVPYFLRDQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            EY MLPR+T +R  R A  G+  GR++EIQR+IGRA+RSV+DL  LG R I +DCDVIQ
Sbjct: 61  GEYAMLPRATESRNIRAAAKGKISGRTKEIQRLIGRAMRSVIDLDKLGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D L ++ +          +K  +AA S G++ G P +DL Y 
Sbjct: 121 ADGGTRTASITGAFVALIDALDYLLEKDKI--DEMPVKSFIAATSVGIIDGAPALDLCYK 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS+  VD N VMT+ G I+E+QG+ E   F+Q     ++ L +  I +LI+ QK+ + +
Sbjct: 179 EDSSAQVDLNLVMTEEGRIIEIQGTGEENPFTQQELDKLVELGEKGIKELIRYQKEALGD 238

Query: 241 E 241
           +
Sbjct: 239 K 239


>gi|315104464|gb|EFT76440.1| ribonuclease PH [Propionibacterium acnes HL050PA2]
          Length = 254

 Score =  332 bits (852), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ + R     AEGS LV FG T +L  A++ E VP W + +  GW+TA
Sbjct: 16  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+ GGR+ EI R++GR+LR+VVD  ALG   II+DCDV+QA
Sbjct: 76  EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +        +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 193

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VM+ +G  VE+QG+AE   F+++    +L+LA    A L + Q + + 
Sbjct: 194 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 251


>gi|295095228|emb|CBK84318.1| ribonuclease PH [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 238

 Score =  332 bits (852), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 123/240 (51%), Positives = 162/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +         +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKLVAAGKL--KTNPMKGMVAAVSVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALEN 238


>gi|157693251|ref|YP_001487713.1| ribonuclease PH [Bacillus pumilus SAFR-032]
 gi|166991082|sp|A8FFY6|RNPH_BACP2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157682009|gb|ABV63153.1| tRNA nucleotidyltransferase [Bacillus pumilus SAFR-032]
          Length = 242

 Score =  332 bits (852), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 111/243 (45%), Positives = 159/243 (65%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MRL  R  +++R+I +      + EGS L+  G+T ++  A++E++VP ++R    GWIT
Sbjct: 1   MRLDERHYDELRKIEIEAGYITHPEGSVLISAGNTKVICNASIEDRVPPFLRGEGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL  LG R I IDCDVIQ
Sbjct: 61  AEYSMLPRATAQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VA+   +Q +       Q    +  ++AAIS G+      ++DL+Y
Sbjct: 121 ADGGTRTASITGAFVAMTLAIQKLRAEGAIKQ--NPITDYLAAISVGIDSQQGLLLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS+ +VD N +MT +G  VE+QG+ E ATFS++    +L+LA+  I +LI+ QK V  
Sbjct: 179 EEDSSAEVDMNVIMTGAGRFVELQGTGEEATFSREQLNGLLDLAEKGIKELIEKQKAVTG 238

Query: 240 NEV 242
             +
Sbjct: 239 EVI 241


>gi|282855012|ref|ZP_06264344.1| tRNA nucleotidyltransferase [Propionibacterium acnes J139]
 gi|282581600|gb|EFB86985.1| tRNA nucleotidyltransferase [Propionibacterium acnes J139]
 gi|314924268|gb|EFS88099.1| ribonuclease PH [Propionibacterium acnes HL001PA1]
 gi|315106207|gb|EFT78183.1| ribonuclease PH [Propionibacterium acnes HL030PA1]
          Length = 254

 Score =  332 bits (852), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ + R     AEGS LV FG T +L  A++ E VP W + +  GW+TA
Sbjct: 16  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+ GGR+ EI R++GR+LR+VVD  ALG   II+DCDV+QA
Sbjct: 76  EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +        +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 193

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VM+ +G  VE+QG+AE   F+++    +L+LA    A L + Q + + 
Sbjct: 194 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 251


>gi|315079990|gb|EFT51966.1| ribonuclease PH [Propionibacterium acnes HL078PA1]
          Length = 254

 Score =  332 bits (852), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 110/238 (46%), Positives = 155/238 (65%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ + R     AEGS LV FG T +L  A++ E VP W + +  GW+TA
Sbjct: 16  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+ GGR+ EI R++GR+LR+VVD  ALG   II+DCDV+QA
Sbjct: 76  EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +        +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALVDAVNWLR--GRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEE 193

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VM+ SG  VE+QG+AE   F+++    +L+LA    A L + Q + + 
Sbjct: 194 DSRADTDMNVVMSGSGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 251


>gi|307244059|ref|ZP_07526178.1| tRNA nucleotidyltransferase [Peptostreptococcus stomatis DSM 17678]
 gi|306492583|gb|EFM64617.1| tRNA nucleotidyltransferase [Peptostreptococcus stomatis DSM 17678]
          Length = 486

 Score =  332 bits (852), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 103/239 (43%), Positives = 158/239 (66%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ +Q+R +++TR  + ++ GS L++ G+T ++ TA++E+ VP +++ T  GWI+A
Sbjct: 37  RPDGRQYDQLRPVNITRNYTMHSAGSVLIEVGNTKVICTASVEDGVPGFMKGTGKGWISA 96

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +R++  GR  GRSQEIQR+IGR++RSVV+L  LG R I IDCDVIQA
Sbjct: 97  EYSMLPSATETRKRRDSSKGRVDGRSQEIQRLIGRSIRSVVNLEDLGERTIWIDCDVIQA 156

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D L  +    +  ++   L   +AA+S G++     +D+ Y E
Sbjct: 157 DGGTRTASITGAFVALADALYKLYQAGDIKKM--PLTSMLAAVSVGVVDSQVCLDICYQE 214

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  +VD N +M + G  +E+Q + E   F++D    +L  A+    DL+++Q+ V+  
Sbjct: 215 DSNAEVDTNIIMNNKGQFIEIQCTGEERPFTRDEMDKILEYAEKGNRDLMRIQRRVLGE 273


>gi|16124407|ref|NP_418971.1| ribonuclease PH [Caulobacter crescentus CB15]
 gi|221233090|ref|YP_002515526.1| ribonuclease PH [Caulobacter crescentus NA1000]
 gi|239977592|sp|B8GXP2|RNPH_CAUCN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|239977593|sp|P0CAW5|RNPH_CAUCR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|13421265|gb|AAK22139.1| ribonuclease PH [Caulobacter crescentus CB15]
 gi|220962262|gb|ACL93618.1| ribonuclease PH [Caulobacter crescentus NA1000]
          Length = 238

 Score =  332 bits (852), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 128/240 (53%), Positives = 171/240 (71%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +Q+R ++L   V++YAEGSCL+ FG T +L TAT+EE VP W+RN   GW+T
Sbjct: 1   MRPSERAPDQLRAVTLETGVNRYAEGSCLIGFGHTKVLVTATVEENVPGWMRNKGAGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATHTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVVQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVAL    +++ D       +  + G VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGAWVALRLATKYLLD--EGVLKTDPILGQVAAVSCGVFNGVPVLDLDYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D+NFV+T  G IVE+Q + E+  F++  F ++  LA+  I +L  LQ+  I  
Sbjct: 179 EDSNAEADSNFVLTGVGDIVEIQATGEKRGFTRAEFESLYGLAEKGINELFALQRAAIGG 238


>gi|157149261|ref|YP_001456580.1| ribonuclease PH [Citrobacter koseri ATCC BAA-895]
 gi|166228276|sp|A8ARN1|RNPH_CITK8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157086466|gb|ABV16144.1| hypothetical protein CKO_05101 [Citrobacter koseri ATCC BAA-895]
          Length = 238

 Score =  332 bits (852), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 124/240 (51%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +   +N    +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   FS +    +L LA+  I  ++  QK  + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 238


>gi|328956949|ref|YP_004374335.1| ribonuclease PH [Carnobacterium sp. 17-4]
 gi|328673273|gb|AEB29319.1| ribonuclease PH [Carnobacterium sp. 17-4]
          Length = 454

 Score =  332 bits (852), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 114/243 (46%), Positives = 156/243 (64%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+ ++ R +++     K+ EGS LV FGDT ++  AT+E +VP +++    GW+ 
Sbjct: 1   MRADGRKNDENRLVTIETNYLKHPEGSVLVSFGDTKVICNATIETRVPRFLKGMGSGWVH 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+I R+LRS +DL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNIREAAKGKLSGRTMEIQRLIARSLRSSIDLEALGERSITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   +Q + D          +K +VAAIS G+L  G  ++DL+Y
Sbjct: 121 ADGGTRTASITGAFVALKLAIQTLLDSGEL--TESPIKENVAAISVGILKDGEAVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS+ +VD N VMT  G  VE+QG+ E +TFS +    ML   K  I +LI++Q D   
Sbjct: 179 LEDSSAEVDMNLVMTSLGQFVEIQGTGEESTFSSEQLSVMLEFGKKGINELIQVQDDAFQ 238

Query: 240 NEV 242
             +
Sbjct: 239 QAL 241


>gi|172041146|ref|YP_001800860.1| ribonuclease PH [Corynebacterium urealyticum DSM 7109]
 gi|171852450|emb|CAQ05426.1| ribonuclease PH [Corynebacterium urealyticum DSM 7109]
          Length = 257

 Score =  332 bits (852), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 112/240 (46%), Positives = 161/240 (67%), Gaps = 2/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R+I +TRR +    GS LV+FG+T ++ TA++E  VP + R++  GW+TA
Sbjct: 12  RADGRSVDQLRDIRITRRFTTNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 71

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R+ RE++ G+  GR+ EI R++GRALR+ VDL+ LG   I IDCDV+QA
Sbjct: 72  EYAMLPSATHERMPRESMRGKVKGRTHEISRLVGRALRAAVDLTELGENTIAIDCDVLQA 131

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D L ++++        + L+  VAA+S G++ G   +DL Y E
Sbjct: 132 DGGTRTAAITGAYVALADALAYLQE--QGVVPGKPLRAPVAAVSVGIIDGVACLDLPYEE 189

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  DVD N VMT +G  VE+QG+ E A F +     ML+LA+  +  LI+LQ+  ++ +
Sbjct: 190 DSRADVDMNVVMTKAGRFVEIQGTGEAAEFDRAELNTMLDLAEGGLHQLIELQERALNTD 249


>gi|152976902|ref|YP_001376419.1| ribonuclease PH [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|189043753|sp|A7GTG6|RNPH_BACCN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|152025654|gb|ABS23424.1| ribonuclease PH [Bacillus cytotoxicus NVH 391-98]
          Length = 245

 Score =  332 bits (852), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 161/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+  ++R + +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGREVRELRHVHIHTNYLKHPEGSVLIEVGDTKVICSATVEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL  LG R + IDCDVIQ
Sbjct: 61  AEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEVLGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S G+L     ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVTKI--PVKDYLAATSVGILEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  GH VEVQG+ E ATFS+     +L+ A+  I  LI+ QK+ + 
Sbjct: 179 AEDSKADVDMNVIMTGKGHFVEVQGTGEEATFSRAQLNELLDAAEHGILQLIEKQKEALG 238

Query: 240 NEV 242
           + V
Sbjct: 239 DIV 241


>gi|74316495|ref|YP_314235.1| RNAse PH [Thiobacillus denitrificans ATCC 25259]
 gi|74055990|gb|AAZ96430.1| ribonuclease PH [Thiobacillus denitrificans ATCC 25259]
          Length = 244

 Score =  332 bits (851), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 121/240 (50%), Positives = 156/240 (65%), Gaps = 2/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  + +R +  TRR +K+AEGS LV  GDT +L TA++ +KVP   + +  GW+TA
Sbjct: 7   RPSGRAPDALRALRFTRRFTKHAEGSVLVAMGDTQVLCTASVVDKVPPHKKGSGEGWVTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR+VVDL  LG R + IDCDV+QA
Sbjct: 67  EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVVDLKKLGERTLHIDCDVLQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+I GA+VA+ D +  +       +    L   VAA+S G+  G P++DLDY E
Sbjct: 127 DGGTRCASICGAYVAVADAVSWLVREGALVET--PLVDSVAAVSVGVYQGQPVLDLDYLE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  D D N VMT SG IVEVQG+AE   FS+    A+L+LA   IA +   Q   +   
Sbjct: 185 DSACDTDMNVVMTGSGGIVEVQGTAEGVAFSRTTLEALLDLATAGIAQISAEQVRTLGQP 244


>gi|62182227|ref|YP_218644.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|75479865|sp|Q57I99|RNPH_SALCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|62129860|gb|AAX67563.1| RNase PH [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. SC-B67]
 gi|322716715|gb|EFZ08286.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 238

 Score =  332 bits (851), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 125/240 (52%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVVQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   +N    +  +KG VAA+S G++ G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   FS +    +L LA+  I  ++  QK  + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 238


>gi|293374133|ref|ZP_06620467.1| tRNA nucleotidyltransferase [Turicibacter sanguinis PC909]
 gi|325837445|ref|ZP_08166427.1| tRNA nucleotidyltransferase [Turicibacter sp. HGF1]
 gi|292647236|gb|EFF65212.1| tRNA nucleotidyltransferase [Turicibacter sanguinis PC909]
 gi|325490977|gb|EGC93275.1| tRNA nucleotidyltransferase [Turicibacter sp. HGF1]
          Length = 236

 Score =  332 bits (851), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 111/236 (47%), Positives = 151/236 (63%), Gaps = 2/236 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ N++R +        + EG+ L+  G+T ++ TAT+E K+P ++R    GWIT
Sbjct: 1   MRTNERKNNELRPVEFIPNYIMHPEGAVLISVGNTKVICTATIENKLPPFMRGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+ VDL  LG R I IDCDVIQ
Sbjct: 61  AEYSMLPRATNTRNVRESARGKLSGRTMEIQRLIGRSLRAAVDLEKLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG+ VA+      +   +        LK H+AAIS G+  G  I+DLDY 
Sbjct: 121 ADGGTRTASITGSVVAMKLAFDKL--VAEGVLKESPLKEHLAAISVGIKDGEVILDLDYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           EDS+ +VD N +MT+SG  VE+QG+ E AT+S      ML++A   I  LI+ QK 
Sbjct: 179 EDSSAEVDMNVIMTESGQFVEIQGTGEEATYSHAELLQMLDVASQGIKQLIEAQKQ 234


>gi|224282438|ref|ZP_03645760.1| ribonuclease PH [Bifidobacterium bifidum NCIMB 41171]
 gi|311063782|ref|YP_003970507.1| ribonuclease PH Rph [Bifidobacterium bifidum PRL2010]
 gi|313139586|ref|ZP_07801779.1| RNase PH [Bifidobacterium bifidum NCIMB 41171]
 gi|310866101|gb|ADP35470.1| Rph Ribonuclease PH [Bifidobacterium bifidum PRL2010]
 gi|313132096|gb|EFR49713.1| RNase PH [Bifidobacterium bifidum NCIMB 41171]
          Length = 254

 Score =  332 bits (851), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 109/239 (45%), Positives = 155/239 (64%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +++R + +TR  +   EGS L++ G+T ++ TAT    VP W +++  GW+T
Sbjct: 14  IRADGRVVDELRPVRITRHFTDVPEGSVLIECGNTRVMCTATFTPSVPRWRKDSGLGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR VVD+ ALG  QI IDCDV+Q
Sbjct: 74  AEYSMLPRATAERTDRESVRGKVGGRTHEISRLIGRCLRGVVDMKALGENQIQIDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D ++  E   +     +VLK  V+A+S G++ G P++DL Y 
Sbjct: 134 ADGGTRTASITGAYVALVDAMRWAEQKRHIRSADRVLKDAVSAVSVGVINGTPMLDLPYI 193

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N  MT SG  +E+QG+AE   F++     +L+LA+    +L   Q+  +S
Sbjct: 194 EDSQAMTDMNVAMTGSGDFIEIQGTAEHRPFNRAELNTLLDLAEKGNKELQAAQRAALS 252


>gi|84501187|ref|ZP_00999392.1| ribonuclease PH [Oceanicola batsensis HTCC2597]
 gi|84390478|gb|EAQ02966.1| ribonuclease PH [Oceanicola batsensis HTCC2597]
          Length = 237

 Score =  332 bits (851), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 128/237 (54%), Positives = 174/237 (73%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  ++MR +S+   V+K+AEGSCL+K GDTH++ TAT+E++VP +I+ +  GW+T
Sbjct: 1   MRPSGRDLSEMRAVSIETGVTKHAEGSCLIKVGDTHVICTATIEDRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA +G+QGGR+ EIQR+IGR+LR+ VD  ALG RQI IDCDVIQ
Sbjct: 61  AEYGMLPRSTTSRMRREASAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQISIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +    +    +  L   VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDVV--TDPLVDPVAAVSCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS   VD NFVMT SG ++EVQ SAE AT+S+D    +++LA+  +++L + QK  
Sbjct: 179 EDSEAGVDGNFVMTGSGRLIEVQMSAEGATYSRDQMNQLVDLAEKGVSELAEKQKAA 235


>gi|227354797|ref|ZP_03839214.1| ribonuclease PH [Proteus mirabilis ATCC 29906]
 gi|227165115|gb|EEI49946.1| ribonuclease PH [Proteus mirabilis ATCC 29906]
          Length = 251

 Score =  332 bits (851), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + RQ +Q+R I++TR  +K+AEGS LV+FGDT +L  AT+EE VP +++    GW+T
Sbjct: 14  MRPADRQADQVRPITITRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+Q GR+ EIQR+I R+LR+ VDL ALG   I +DCDVIQ
Sbjct: 74  AEYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKALGEFTITVDCDVIQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  M       +    LK  VAA+S G++ G P+ DL+Y 
Sbjct: 134 ADGGTRTASISGACVALVDALNKMVAEGKLKK--SPLKSMVAAVSVGIVDGQPLCDLEYV 191

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM D G ++EVQG+AE A FS +   A+L LAK  +  + + QK+ +  
Sbjct: 192 EDSAAETDMNVVMIDDGRMIEVQGTAEGAPFSHEELLALLALAKGGLEKIFEAQKEALKQ 251


>gi|83589383|ref|YP_429392.1| ribonuclease PH [Moorella thermoacetica ATCC 39073]
 gi|123524979|sp|Q2RL40|RNPH_MOOTA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|83572297|gb|ABC18849.1| RNAse PH [Moorella thermoacetica ATCC 39073]
          Length = 250

 Score =  332 bits (851), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 123/240 (51%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R +GR   ++R +++ R   KYAEGS L+  GDT ++ +AT+EEKVP +++NT  GWIT
Sbjct: 2   LRANGRGLRELRPVTIERHYLKYAEGSALITVGDTRVICSATVEEKVPPFLKNTGKGWIT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY +LPRST  R  RE   GR  GR+QEIQR+IGR+LRSVVD+S LG R I +DCDV+Q
Sbjct: 62  AEYSLLPRSTKERTIREVTRGRLTGRTQEIQRLIGRSLRSVVDMSLLGERTIWLDCDVLQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VAL + L  +         +  LK  +AA+S G++    I+DLD+ 
Sbjct: 122 ADGGTRTAAITGSFVALAEALAGLVAAGGV--PAMPLKDFLAAVSVGLVDDELILDLDFQ 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VMT SG +VEVQG+AE   F+++   AML+LA + I  LI +QK V+ +
Sbjct: 180 EDSHAGVDMNVVMTGSGQLVEVQGTAEGRPFTREQLTAMLDLAGEGIESLIAIQKQVLGD 239


>gi|52786716|ref|YP_092545.1| ribonuclease PH [Bacillus licheniformis ATCC 14580]
 gi|161760685|ref|YP_080129.2| ribonuclease PH [Bacillus licheniformis ATCC 14580]
 gi|319647246|ref|ZP_08001468.1| ribonuclease PH [Bacillus sp. BT1B_CT2]
 gi|81609007|sp|Q65GG2|RNPH_BACLD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|52349218|gb|AAU41852.1| Rph [Bacillus licheniformis ATCC 14580]
 gi|145903088|gb|AAU24491.2| ribonuclease PH [Bacillus licheniformis ATCC 14580]
 gi|317390593|gb|EFV71398.1| ribonuclease PH [Bacillus sp. BT1B_CT2]
          Length = 246

 Score =  332 bits (851), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 109/241 (45%), Positives = 154/241 (63%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+ N++R +++      + EGS L+  G T ++  A++E++VP ++R    GWIT
Sbjct: 1   MRYDGRKNNELRPVTMDLDFITHPEGSVLITVGGTKVICNASVEDRVPPFLRGEGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL  LG R I IDCDVIQ
Sbjct: 61  AEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDY 179
           ADGGTRTA+ITGA+ A+   +  + +          +   +AA S G+      I+DL+Y
Sbjct: 121 ADGGTRTASITGAFTAMALAVGRLVE--KGALKEMPITDFLAATSVGIDKEKGLILDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  +VD N VMT  G  VE+QG+ E ATFS+     +L LA+  IA+L++ QK+V+ 
Sbjct: 179 QEDSAAEVDMNVVMTGEGRFVELQGTGEEATFSRSELDGLLELAEKGIAELLEKQKEVLG 238

Query: 240 N 240
           +
Sbjct: 239 D 239


>gi|227488224|ref|ZP_03918540.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227091794|gb|EEI27106.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 237

 Score =  332 bits (851), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 103/238 (43%), Positives = 156/238 (65%), Gaps = 7/238 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++RE+ +TR  +    GS LV+FG T ++ TA+++E VP + +++  GW+TA
Sbjct: 7   RADGRATDELREVKITRNFTTNPAGSVLVEFGRTRVMCTASVQEGVPRFKKDSGEGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V G+  GR+QEI R++GR+LR+ +DL+ LG   I +DCDV+QA
Sbjct: 67  EYAMLPAATNERNPRESVKGKVKGRTQEISRLVGRSLRAAIDLTKLGEYTIALDCDVLQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D L            +  L   VAAIS G++ G+P +DL Y E
Sbjct: 127 DGGTRTASITGAYVALADALAS-------IDKTDALLPPVAAISVGLIDGHPCLDLPYEE 179

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N +M ++G  VE+QG+ E   FS++    +L+L +    +L++ QK+ ++
Sbjct: 180 DSRAEVDMNIIMKENGTFVEIQGTGEHGDFSREQLGTLLDLGEKGCRELVEKQKEALA 237


>gi|50843137|ref|YP_056364.1| ribonuclease PH [Propionibacterium acnes KPA171202]
 gi|50840739|gb|AAT83406.1| probable ribonuclease PH [Propionibacterium acnes KPA171202]
          Length = 254

 Score =  332 bits (851), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ + R     AEGS LV FG T +L  A++ E VP W + +  GW+TA
Sbjct: 16  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+ GGR+ EI R++GR+LR+VVD  ALG   II+DCDV+QA
Sbjct: 76  EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +        +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYKE 193

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VM+ +G  VE+QG+AE   F+++    +L+LA    A L + Q + + 
Sbjct: 194 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 251


>gi|114564986|ref|YP_752500.1| ribonuclease PH [Shewanella frigidimarina NCIMB 400]
 gi|122298386|sp|Q07WF3|RNPH_SHEFN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|114336279|gb|ABI73661.1| RNAse PH [Shewanella frigidimarina NCIMB 400]
          Length = 237

 Score =  331 bits (850), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 123/239 (51%), Positives = 161/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q R I++TR  + +AEGS LV+FGDT +L TA+  E VP +++    GW+T
Sbjct: 1   MRPSNRTPAQTRPITITRSFTAHAEGSVLVEFGDTKVLCTASFTEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+Q GR+QEIQR+IGRALR+ VD+  LG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRAAVDMKLLGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D L            +  LK  +AA+S G+  G  I DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALVDALNWAR--GKGIIKANPLKFLIAAVSVGIYKGEAISDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G I+E+QG+AE   FS +    +L LAK+ I +++ +QK  +S
Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLELLVLAKNSIREIVDVQKAALS 237


>gi|289425019|ref|ZP_06426798.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK187]
 gi|289154718|gb|EFD03404.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK187]
 gi|313763384|gb|EFS34748.1| ribonuclease PH [Propionibacterium acnes HL013PA1]
 gi|313814692|gb|EFS52406.1| ribonuclease PH [Propionibacterium acnes HL059PA1]
 gi|313828238|gb|EFS65952.1| ribonuclease PH [Propionibacterium acnes HL063PA2]
 gi|314914538|gb|EFS78369.1| ribonuclease PH [Propionibacterium acnes HL005PA4]
 gi|314917606|gb|EFS81437.1| ribonuclease PH [Propionibacterium acnes HL050PA1]
 gi|314919638|gb|EFS83469.1| ribonuclease PH [Propionibacterium acnes HL050PA3]
 gi|314930289|gb|EFS94120.1| ribonuclease PH [Propionibacterium acnes HL067PA1]
 gi|314957645|gb|EFT01748.1| ribonuclease PH [Propionibacterium acnes HL002PA1]
 gi|314968972|gb|EFT13070.1| ribonuclease PH [Propionibacterium acnes HL037PA1]
 gi|315098009|gb|EFT69985.1| ribonuclease PH [Propionibacterium acnes HL059PA2]
 gi|315102645|gb|EFT74621.1| ribonuclease PH [Propionibacterium acnes HL046PA1]
 gi|315110460|gb|EFT82436.1| ribonuclease PH [Propionibacterium acnes HL030PA2]
 gi|327451224|gb|EGE97878.1| ribonuclease PH [Propionibacterium acnes HL087PA3]
 gi|327452581|gb|EGE99235.1| ribonuclease PH [Propionibacterium acnes HL083PA2]
 gi|328751977|gb|EGF65593.1| ribonuclease PH [Propionibacterium acnes HL025PA2]
 gi|328754779|gb|EGF68395.1| ribonuclease PH [Propionibacterium acnes HL087PA1]
          Length = 254

 Score =  331 bits (850), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ + R     AEGS LV FG T +L  A++ E VP W + +  GW+TA
Sbjct: 16  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+ GGR+ EI R++GR+LR+VVD  ALG   II+DCDV+QA
Sbjct: 76  EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +        +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 193

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VM+ +G  VE+QG+AE   F+++    +L+LA    A L + Q + + 
Sbjct: 194 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 251


>gi|257463721|ref|ZP_05628110.1| ribonuclease PH [Fusobacterium sp. D12]
 gi|317061266|ref|ZP_07925751.1| ribonuclease PH [Fusobacterium sp. D12]
 gi|313686942|gb|EFS23777.1| ribonuclease PH [Fusobacterium sp. D12]
          Length = 249

 Score =  331 bits (850), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 113/240 (47%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR+ENQ+REI +TR  + +AEGS L++ G+T ++ TA++ EKVP +++NT  GW+TA
Sbjct: 3   RLDGRRENQLREIKITRDFNMHAEGSVLIESGNTKVICTASVSEKVPSFLKNTGKGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY M+PR+TG R +REA  G+  GR+ EIQR+IGRALRS VDL  LG R I +DCDVIQA
Sbjct: 63  EYCMIPRATGERTQREAAKGKLSGRTMEIQRLIGRALRSSVDLEKLGERTITLDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITG+++A+   +  +     +      +   VAA+S G      ++DL+Y E
Sbjct: 123 DGGTRTASITGSFIAMAIAVAKL--LKEEILTESPVLSRVAAVSVGKHENSILLDLNYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS+ +VD N +  D G  +EVQG+ E ATF +    A+L++A+  I  L++ QK+V+  +
Sbjct: 181 DSSAEVDMNVIQNDLGEYIEVQGTGEEATFCRKELNALLDMAEIGIHQLLEKQKEVLGED 240


>gi|30248295|ref|NP_840365.1| 3' exoribonuclease [Nitrosomonas europaea ATCC 19718]
 gi|61216039|sp|Q82XJ4|RNPH_NITEU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|30138181|emb|CAD84187.1| 3' exoribonuclease family [Nitrosomonas europaea ATCC 19718]
          Length = 241

 Score =  331 bits (850), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 118/239 (49%), Positives = 168/239 (70%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R + R   QMR + + R   ++AEGS L+++G+T ++ TA++ EKVP +++    GW+TA
Sbjct: 3   RCNNRAPAQMRPVRIIRHYVRHAEGSVLIEYGETRVICTASVIEKVPPFLKGAGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R++REA  G+Q GR+ EIQR+IGRALRS++DL  LG R I +DCDVIQA
Sbjct: 63  EYGMLPRSTGERMQREAAKGKQSGRTMEIQRLIGRALRSILDLEKLGERTIQMDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL+D + ++   + +      ++ HVAA+S G+L G P++DLDY E
Sbjct: 123 DGGTRTASITGAFVALYDAIDYLR--AERMISQNPIRDHVAAVSVGILKGQPLLDLDYLE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  D D N VMT S  +VEVQG+AE+  FS+     MLN+A+  + +L  +Q+  +  
Sbjct: 181 DSGCDTDLNVVMTGSLGLVEVQGTAEKVVFSRQELDVMLNMAQQGLQELFDVQRKALET 239


>gi|322418585|ref|YP_004197808.1| ribonuclease PH [Geobacter sp. M18]
 gi|320124972|gb|ADW12532.1| ribonuclease PH [Geobacter sp. M18]
          Length = 239

 Score =  331 bits (850), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 118/238 (49%), Positives = 163/238 (68%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R +GR  + +RE+ +TR   K+AEGS L++FGDT ++  AT+E KVP +++    GW+TA
Sbjct: 3   RTNGRAADALREVKITRNYLKHAEGSVLIEFGDTKVICNATVETKVPSFLKGKGTGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R +RE+  G+  GR+ EIQR+IGR+LR+VVD+  LG R I+IDCDVIQA
Sbjct: 63  EYCMLPRATHTRNQRESSKGKLSGRTHEIQRLIGRSLRAVVDMEKLGERSILIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D LQ + D          L+  VAA+S G++ G P +DLDY E
Sbjct: 123 DGGTRTASITGAYVALADALQSLVDNGEL--TRSPLREAVAAVSVGIVDGVPFLDLDYPE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS+ +VD NFVMT S   VEVQG+AE   F+ +   AM + A   +  L ++Q++ + 
Sbjct: 181 DSSAEVDMNFVMTSSMRFVEVQGTAEAEPFTIEQMDAMRSHAILGLTRLFEIQQEALG 238


>gi|197286965|ref|YP_002152837.1| ribonuclease PH [Proteus mirabilis HI4320]
 gi|226736924|sp|B4F0W3|RNPH_PROMH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|194684452|emb|CAR46192.1| ribonuclease PH [Proteus mirabilis HI4320]
          Length = 238

 Score =  331 bits (850), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + RQ +Q+R I++TR  +K+AEGS LV+FGDT +L  AT+EE VP +++    GW+T
Sbjct: 1   MRPADRQADQVRPITITRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+Q GR+ EIQR+I R+LR+ VDL ALG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKALGEFTITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  M       +    LK  VAA+S G++ G P+ DL+Y 
Sbjct: 121 ADGGTRTASISGACVALVDALNKMVTEGKLKK--SPLKSMVAAVSVGIVDGQPLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM D G ++EVQG+AE A FS +   A+L LAK  +  + + QK+ +  
Sbjct: 179 EDSAAETDMNVVMIDDGRMIEVQGTAEGAPFSHEELLALLALAKGGLEKIFEAQKEALKQ 238


>gi|269955862|ref|YP_003325651.1| ribonuclease PH [Xylanimonas cellulosilytica DSM 15894]
 gi|269304543|gb|ACZ30093.1| ribonuclease PH [Xylanimonas cellulosilytica DSM 15894]
          Length = 262

 Score =  331 bits (850), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 113/240 (47%), Positives = 155/240 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R + +TR     AEGS LV+FG T +L  A+  E VP W + +  GW+TA
Sbjct: 20  RADGRAPDELRAVKITRGWLDAAEGSVLVEFGGTRVLCAASFTEGVPRWKKGSGEGWVTA 79

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+++D+SALG   I++DCDV+QA
Sbjct: 80  EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRAIIDVSALGENTIVLDCDVLQA 139

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +       +     +VL   V+A+S G++ G P++DL Y E
Sbjct: 140 DGGTRTAAITGAYVALADAVAWGRRHGHIKGGKEVLTDSVSAVSVGIVDGVPMLDLPYVE 199

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D     D N V+T SG  VEVQG+AE   F +    A+L+LA    A L +LQ+  ++ E
Sbjct: 200 DVRAGTDMNVVVTGSGTFVEVQGTAEHGAFDRAELDALLDLAVAGNARLAELQRAALAEE 259


>gi|296100489|ref|YP_003610635.1| ribonuclease PH [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295054948|gb|ADF59686.1| ribonuclease PH [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 238

 Score =  331 bits (850), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 123/240 (51%), Positives = 162/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +         +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKLVAAGKL--KTNPMKGMVAAVSVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVTTQKAALEN 238


>gi|72119576|gb|AAZ61839.1| RNAse PH [Ralstonia eutropha JMP134]
          Length = 258

 Score =  331 bits (850), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 128/239 (53%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  + +R ISLTR  +++AEGS L  FGDT +L TA++  KVP   + +  GW+T
Sbjct: 20  MRPSGRAADALRSISLTRHYTRHAEGSVLCAFGDTKVLCTASVLAKVPPHKKGSGEGWVT 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRA+RSV DL+ALG   + +DCDV+Q
Sbjct: 80  AEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRAMRSVFDLAALGEYTLHLDCDVLQ 139

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VA HD +  M    +    +  ++  VAA+S GM+ G P++DLDY 
Sbjct: 140 ADGGTRTAAITGAFVAAHDAISTM--LRDGLIAASPIRDFVAAVSVGMVDGVPLLDLDYA 197

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT SG  VEVQG+AE A FS+    AM  LA+D IA L++ Q+  + 
Sbjct: 198 EDSNCDTDMNVVMTGSGGFVEVQGTAEGAAFSRADLDAMTRLAEDGIAQLVRHQRQALG 256


>gi|226326904|ref|ZP_03802422.1| hypothetical protein PROPEN_00764 [Proteus penneri ATCC 35198]
 gi|225204741|gb|EEG87095.1| hypothetical protein PROPEN_00764 [Proteus penneri ATCC 35198]
          Length = 251

 Score =  331 bits (850), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + RQ NQ+R I++TR  +K+AEGS LV+FGDT +L  AT+E+ VP +++    GW+T
Sbjct: 14  MRPADRQANQVRPITITRHYTKHAEGSVLVEFGDTKVLCNATVEDGVPRFLKGQGQGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+Q GR+ EIQR+I R+LR+ VDL ALG   I +DCDVIQ
Sbjct: 74  AEYGMLPRATNSRNAREAARGKQTGRTMEIQRLIARSLRAAVDLKALGEFTITVDCDVIQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  M +     +    LK  VAA+S G++ G P+ DL+Y 
Sbjct: 134 ADGGTRTASISGACVALVDALNKMVEEGKLKK--SPLKSMVAAVSVGIVDGEPLCDLEYV 191

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM D G ++EVQG+AE A FS +   A+L LAK  +  + + QK+ +  
Sbjct: 192 EDSAAETDMNVVMIDDGRMIEVQGTAEGAPFSHEELLALLALAKGGLEKIFEAQKEALKQ 251


>gi|499181|emb|CAA25357.1| unnamed protein product [Escherichia coli]
          Length = 238

 Score =  331 bits (850), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 124/240 (51%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD  TRTA+ITGA VAL D LQ + +  N    +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADAWTRTASITGACVALVDALQKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGGIESIVATQKAALAN 238


>gi|119382767|ref|YP_913823.1| ribonuclease PH [Paracoccus denitrificans PD1222]
 gi|119372534|gb|ABL68127.1| RNAse PH [Paracoccus denitrificans PD1222]
          Length = 241

 Score =  331 bits (850), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 124/239 (51%), Positives = 169/239 (70%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  + MR IS+   + ++AEGSCL+  GDT +L +A++EEK P +++ +  GW+T
Sbjct: 2   MRPSGRNLSDMRPISIETGIMRHAEGSCLISCGDTRVLCSASIEEKAPPFLKGSGQGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+QEIQR+IGRALR+ VD  ALG RQI++DCDVIQ
Sbjct: 62  AEYGMLPRATNTRNRREAAAGKQSGRTQEIQRLIGRALRAGVDRRALGERQIVVDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR AAITG WVAL   +  +         +  +  HVAA+SCG+  G PI+DLDY 
Sbjct: 122 ADGGTRCAAITGGWVALRLAMNKLLKAG--IVTADPIMDHVAAVSCGIYAGQPILDLDYA 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D NF+MT +G ++EVQ SAE ATFS+     +L+LA+  IA+L++ Q + ++
Sbjct: 180 EDSEAGTDGNFIMTGAGRLIEVQMSAEGATFSRPEMNQLLDLAEAGIAELVRAQNEAVA 238


>gi|289549062|ref|YP_003474050.1| ribonuclease PH [Thermocrinis albus DSM 14484]
 gi|289182679|gb|ADC89923.1| ribonuclease PH [Thermocrinis albus DSM 14484]
          Length = 255

 Score =  331 bits (849), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 114/235 (48%), Positives = 157/235 (66%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+ N++R+I +TR   K+ EGS LV+FGDT ++ T +++E VP +++    GWIT
Sbjct: 1   MRSDGRKPNELRKIRITRDYLKHPEGSVLVEFGDTKVVCTVSVQESVPPFLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V GR GGR+ EIQRMIGRA+R+ +DL+ +G R   IDCDV+Q
Sbjct: 61  AEYSMLPRATQTRNIRESVQGRVGGRTHEIQRMIGRAMRTALDLTKVGERTFWIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D +  +   +     +  +K  VAA+S G++    ++DL++ 
Sbjct: 121 ADGGTRTAAITGAFVALADAVIKL--YTEGVLTTTPIKDFVAAVSVGIVDDQILLDLNFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS   VD N V T SG I E+    E  TFS++    MLNLA   I  L++LQ+
Sbjct: 179 EDSRAKVDMNVVATGSGMISEIHAMGEEHTFSREDMDKMLNLALAGIRQLVELQR 233


>gi|188532222|ref|YP_001906019.1| ribonuclease PH [Erwinia tasmaniensis Et1/99]
 gi|226736908|sp|B2VF76|RNPH_ERWT9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|188027264|emb|CAO95107.1| Ribonuclease PH (tRNA nucleotidyltransferase) [Erwinia tasmaniensis
           Et1/99]
          Length = 238

 Score =  331 bits (849), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 121/240 (50%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GW+T
Sbjct: 1   MRPSGRSAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATIEEGVPRFLKGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ +DL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L H+         +  +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNHLVSTGKL--KANPMKGMVAAISVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED+  + D N VMT+ G ++EVQG+AE   FS +    +L LA+  I  L+  QK  +++
Sbjct: 179 EDAAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLKLLELARGGIDTLVAAQKAALTD 238


>gi|288553636|ref|YP_003425571.1| ribonuclease PH [Bacillus pseudofirmus OF4]
 gi|288544796|gb|ADC48679.1| ribonuclease PH [Bacillus pseudofirmus OF4]
          Length = 251

 Score =  331 bits (849), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 111/241 (46%), Positives = 157/241 (65%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GRQ N++R + L     K+ EGS L+  GDT ++ TA++EE+VP ++R    GWIT
Sbjct: 1   MRSDGRQVNELRAVQLDTDYLKHPEGSVLISMGDTKVICTASIEERVPPFMRGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGR+LR+++DL  LG R I IDCDVIQ
Sbjct: 61  AEYSMLPRATEQRTIRESSKGKVTGRTMEIQRLIGRSLRTILDLDQLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VAL   +    +       S  +K ++AA+S G+   +  ++DL Y
Sbjct: 121 ADGGTRTASITGAFVALSIAVNKAVE--RGLIKSWPIKDYLAAVSVGVEPTHGEVLDLCY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED+  +VD N +MT +   VE+QG+ E ATFS++    +L+LA+  I +LI  QK  + 
Sbjct: 179 VEDAAAEVDMNVIMTGAHQFVELQGTGEEATFSREQLNQLLDLAEHGIDELISHQKAALG 238

Query: 240 N 240
            
Sbjct: 239 E 239


>gi|270265234|ref|ZP_06193496.1| ribonuclease PH [Serratia odorifera 4Rx13]
 gi|270040868|gb|EFA13970.1| ribonuclease PH [Serratia odorifera 4Rx13]
          Length = 238

 Score =  331 bits (849), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 121/240 (50%), Positives = 162/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPAGRAPQQVRPLTLTRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +         +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNALVAAGKL--KANPMKGLVAAVSVGIVKGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS D   A+L LA+  I  + + QK  ++ 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHDELLALLALARGGIETIFQAQKAALAE 238


>gi|126724518|ref|ZP_01740361.1| ribonuclease PH [Rhodobacterales bacterium HTCC2150]
 gi|126705682|gb|EBA04772.1| ribonuclease PH [Rhodobacterales bacterium HTCC2150]
          Length = 235

 Score =  331 bits (849), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 125/238 (52%), Positives = 171/238 (71%), Gaps = 3/238 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ NQMR++ +   V+++AEGSCL+K GDTH+L TA+LE  VP +++N+  GW+T
Sbjct: 1   MRPSGRELNQMRDVVIETNVTRHAEGSCLIKMGDTHVLCTASLEPGVPRFLKNSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA +G Q GR+QEIQR+IGR+LR+ +D  ALG RQI IDCDVIQ
Sbjct: 61  AEYGMLPRATNTRMRREAKNG-QSGRTQEIQRLIGRSLRACIDRVALGERQITIDCDVIQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +         +  +  H+AA+SCG+  G  ++DLDY 
Sbjct: 120 ADGGTRCASITGGWVALRLAVNRLMKAGEV--KTDPIMDHIAAVSCGIYAGQCVLDLDYP 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS    D NFVMT +  +VE+QGSAE ATFS+D F  +++LA+  + +L+  QK  +
Sbjct: 178 EDSEAGTDGNFVMTGAKGMVELQGSAEGATFSRDQFNQLMDLAEKGVDELVAAQKAAV 235


>gi|269797499|ref|YP_003311399.1| ribonuclease PH [Veillonella parvula DSM 2008]
 gi|269094128|gb|ACZ24119.1| ribonuclease PH [Veillonella parvula DSM 2008]
          Length = 251

 Score =  331 bits (849), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 123/240 (51%), Positives = 162/240 (67%), Gaps = 4/240 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R   Q+R I +TR  ++YAEGS L++ G T ++ TAT+E+ VP W++ +  GW+T
Sbjct: 1   MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATVEDSVPRWLKGSGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY +LPRST  RV REA  G+Q GR+ EIQR+IGRALR+VVDL ALG R I IDCDVIQ
Sbjct: 61  AEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D +      + KF     +    AAIS G+    PI DL Y 
Sbjct: 121 ADGGTRTASITGAFVALVDAVDFTFGGAGKF----PITDFCAAISVGIGPEGPITDLCYE 176

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N V T SG++VEVQG+ E  TF++D   A+L+LA+    +L+  Q++V+ +
Sbjct: 177 EDSAAIVDMNVVRTGSGNMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQREVLGS 236


>gi|237728940|ref|ZP_04559421.1| ribonuclease PH [Citrobacter sp. 30_2]
 gi|283787723|ref|YP_003367588.1| ribonuclease PH [Citrobacter rodentium ICC168]
 gi|226909562|gb|EEH95480.1| ribonuclease PH [Citrobacter sp. 30_2]
 gi|282951177|emb|CBG90870.1| ribonuclease PH [Citrobacter rodentium ICC168]
          Length = 238

 Score =  331 bits (849), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 123/240 (51%), Positives = 162/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA+++E VP +++    GWIT
Sbjct: 1   MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +         +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKLVASGKL--KTNPMKGMVAAVSVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   FS +    +L LA+  I  ++  QK  + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 238


>gi|254487308|ref|ZP_05100513.1| ribonuclease PH [Roseobacter sp. GAI101]
 gi|214044177|gb|EEB84815.1| ribonuclease PH [Roseobacter sp. GAI101]
          Length = 237

 Score =  331 bits (849), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 122/237 (51%), Positives = 173/237 (72%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ ++MR +S+    +K+AEGS L+K G TH+L TAT+E++VP +I+ +  GW+T
Sbjct: 1   MRPSGRKLDEMRAVSVDTDFTKHAEGSALIKMGGTHVLCTATIEDRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA  G+QGGR+ EIQR+IGRALR+ VD SALG RQI IDCDV+Q
Sbjct: 61  AEYGMLPRATNTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRSALGERQITIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG W+AL   +  +    +    +  L   VAAISCG+  G  ++DLDY 
Sbjct: 121 ADGGTRCASITGGWIALKLAVNKLMKAGDVV--NDPLADPVAAISCGIYAGQSVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS   VD NF+MT +G ++E+Q SAE +T+S+D    +++LA+  +++L+++QK V
Sbjct: 179 EDSEAGVDGNFIMTGTGRLIEIQMSAEGSTYSRDQMNQLMDLAEKGVSELVEIQKAV 235


>gi|312139208|ref|YP_004006544.1| ribonuclease ph rpha [Rhodococcus equi 103S]
 gi|325673486|ref|ZP_08153177.1| tRNA nucleotidyltransferase [Rhodococcus equi ATCC 33707]
 gi|311888547|emb|CBH47859.1| ribonuclease PH RphA [Rhodococcus equi 103S]
 gi|325555507|gb|EGD25178.1| tRNA nucleotidyltransferase [Rhodococcus equi ATCC 33707]
          Length = 260

 Score =  331 bits (849), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 106/240 (44%), Positives = 157/240 (65%), Gaps = 1/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++RE+ +TR  + +  GS LV+FG+T ++ TA++EE VP W + +  GW+TA
Sbjct: 4   REDGRTDDELREVRITRGFTNHPAGSVLVEFGNTRVMCTASVEEGVPRWRKGSGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V G+ GGR+QEI R++GR+LR+ +DL+A+G   I IDCDV+QA
Sbjct: 64  EYAMLPAATHTRSGRESVKGKVGGRTQEISRLVGRSLRACIDLAAIGENTIAIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++          Q +   +AA+S G++ G   +DL Y E
Sbjct: 124 DGGTRTAAITGAYVALVDAVTYLRAAGRLAD-PQPISCAIAAVSVGVVDGRVRLDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  +VD N V TD+G +VE+QG+ E ATF +     +L+ A      L  +Q+  ++  
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFAIQQAALAEP 242


>gi|111018437|ref|YP_701409.1| ribonuclease PH [Rhodococcus jostii RHA1]
 gi|110817967|gb|ABG93251.1| tRNA nucleotidyltransferase [Rhodococcus jostii RHA1]
          Length = 262

 Score =  331 bits (849), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 105/238 (44%), Positives = 157/238 (65%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++RE+ +TR  + +  GS LV+FG+T ++ TA++E+ VP W + +  GW+TA
Sbjct: 4   REDGRADDELREVKITRGFTTHPAGSVLVEFGNTRVMCTASVEDGVPRWRQGSGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V G+ GGR+QEI R++GR+LR+ +DL+A+G   I +DCDV+QA
Sbjct: 64  EYAMLPAATHTRSGRESVKGKVGGRTQEISRLVGRSLRACIDLAAIGENTIALDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++          Q +   +AA+S G++ G   +DL Y E
Sbjct: 124 DGGTRTAAITGAYVALVDAVTYLRAAGRLAD-PQPISCGIAAVSVGVVDGRVRLDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VE+QG+ E ATF +     +L+ A      L ++QK  + 
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFEIQKAALE 240


>gi|260576117|ref|ZP_05844110.1| ribonuclease PH [Rhodobacter sp. SW2]
 gi|259021597|gb|EEW24900.1| ribonuclease PH [Rhodobacter sp. SW2]
          Length = 237

 Score =  331 bits (849), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 128/239 (53%), Positives = 171/239 (71%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+  +MR I +   V K+AEGSCL+K G+TH+L +AT+E+K P +++NT  GW+T
Sbjct: 1   MRPSGRKLGEMRPIVIETGVMKHAEGSCLIKMGETHVLCSATIEDKAPPFLKNTGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ VD SALG RQI+IDCDV+Q
Sbjct: 61  AEYGMLPRATNSRNRREAAAGKQTGRTQEIQRLIGRALRAGVDRSALGERQIVIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +        +S  +  HVAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAMNKLLKAG--VIVSDPMIDHVAAVSCGIYAGQPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D NF++T  G ++EVQ SAE ATFS+     +L+LA+   ADL+  QK  + 
Sbjct: 179 EDSAAGTDGNFILTGRGRLIEVQMSAEGATFSRAEMGELLDLAEAGAADLVAAQKAALG 237


>gi|314982113|gb|EFT26206.1| ribonuclease PH [Propionibacterium acnes HL110PA3]
 gi|315090352|gb|EFT62328.1| ribonuclease PH [Propionibacterium acnes HL110PA4]
          Length = 254

 Score =  330 bits (848), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 108/238 (45%), Positives = 154/238 (64%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ +       AEGS LV FG T +L  A++ E VP W + +  GW+TA
Sbjct: 16  RIDGRRLDQLRDVRIECGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+ GGR+ EI R++GR+LR+VVD  ALG   II+DCDV+QA
Sbjct: 76  EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +        +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 193

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VM+ +G  VE+QG+AE   F+++    +L+LA    A L + Q + + 
Sbjct: 194 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 251


>gi|226360555|ref|YP_002778333.1| ribonuclease PH [Rhodococcus opacus B4]
 gi|226239040|dbj|BAH49388.1| ribonuclease PH [Rhodococcus opacus B4]
          Length = 262

 Score =  330 bits (848), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 106/238 (44%), Positives = 157/238 (65%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++RE+ +TR  + +  GS LV+FG+T ++ TA++E+ VP W + T  GW+TA
Sbjct: 4   REDGRADDELREVKITRGFTTHPAGSVLVEFGNTRVMCTASVEDGVPRWRQGTGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V G+ GGR+QEI R++GR+LR+ +DL+A+G   I +DCDV+QA
Sbjct: 64  EYAMLPAATHTRSGRESVKGKVGGRTQEISRLVGRSLRACIDLAAIGENTIALDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++          Q +   +AA+S G++ G   +DL Y E
Sbjct: 124 DGGTRTAAITGAYVALVDAVTYLRAAGRLAD-PQPISCGIAAVSVGVVDGRVRLDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VE+QG+ E ATF +     +L+ A      L ++QK  + 
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDSALAGCEQLFEIQKAALE 240


>gi|149204370|ref|ZP_01881337.1| ribonuclease PH [Roseovarius sp. TM1035]
 gi|149142255|gb|EDM30302.1| ribonuclease PH [Roseovarius sp. TM1035]
          Length = 238

 Score =  330 bits (848), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 129/237 (54%), Positives = 174/237 (73%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  ++MR +S+   V K+AEGSCL+K GDTH+L TAT+EE+VP +++ +  GW+T
Sbjct: 1   MRPSGRNLSEMRSVSIETGVLKHAEGSCLIKIGDTHVLCTATIEERVPPFVKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R++REA +G+QGGR+ EIQR+IGR+LR+ VD  ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRSTGSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +Q +    +    S  L   VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALKLAVQKLMKAGDVL--SDPLIDPVAAVSCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS   VD NF+MT +  ++EVQ SAE AT+S+D   A+L+LA+  +  L+  Q++ 
Sbjct: 179 EDSEAGVDGNFIMTGTKRLIEVQMSAEGATYSRDQMNALLDLAELGVDQLVAKQREA 235


>gi|88811938|ref|ZP_01127191.1| ribonuclease PH [Nitrococcus mobilis Nb-231]
 gi|88790822|gb|EAR21936.1| ribonuclease PH [Nitrococcus mobilis Nb-231]
          Length = 238

 Score =  330 bits (848), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 124/239 (51%), Positives = 167/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  ++MR + +TR  +K+AEGS LV+FGDT +L  A++EE+VP W+RN+  GWIT
Sbjct: 1   MRPSGRHNHEMRAVRITRGFTKHAEGSALVEFGDTKILCNASVEERVPPWLRNSGRGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  REAV GRQ GR+ EIQR+IGR+LR+ +DL ALG R+IIIDCDV+Q
Sbjct: 61  AEYAMLPRATQSRNDREAVRGRQQGRTVEIQRLIGRSLRAAIDLQALGERRIIIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG +VAL D LQ +            L GHVAA+S G+  G  ++DLDY 
Sbjct: 121 ADGGTRTAAITGGYVALADALQSL--IKKGLLKRPPLFGHVAAVSVGIYRGKVVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  + D N VM + G ++E+QG+AE   F +     M++LA++    LI+ Q+  + 
Sbjct: 179 EDAEAETDMNIVMNEVGALIEIQGTAEGHAFRRVELGQMIDLAEEGTRSLIEAQRQALE 237


>gi|313894107|ref|ZP_07827673.1| tRNA nucleotidyltransferase [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313441671|gb|EFR60097.1| tRNA nucleotidyltransferase [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 251

 Score =  330 bits (848), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 160/240 (66%), Gaps = 4/240 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R   Q+R I +TR  ++YAEGS L++ G T ++ TAT+E+ VP W++ +  GW+T
Sbjct: 1   MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATVEDSVPRWLKGSGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY +LPRST  RV REA  G+Q GR+ EIQR+IGRALR+VVDL ALG R I IDCDVIQ
Sbjct: 61  AEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D +      + KF     +    AAIS G+    PI DL Y 
Sbjct: 121 ADGGTRTASITGAFVALVDAVDFTFGGAGKF----PITDFCAAISVGIGPEGPITDLCYE 176

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N V T SG +VEVQG+ E  TF++D   A+L+LA+    +L+  Q++ + +
Sbjct: 177 EDSAAIVDMNVVRTGSGDMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQREALGS 236


>gi|327332417|gb|EGE74153.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL097PA1]
          Length = 280

 Score =  330 bits (848), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ + R     AEGS LV FG T +L  A++ E VP W + +  GW+TA
Sbjct: 42  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 101

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+ GGR+ EI R++GR+LR+VVD  ALG   II+DCDV+QA
Sbjct: 102 EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 161

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +        +S+ + G V AIS G++ G P++DL Y E
Sbjct: 162 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPITGSVQAISVGVVDGIPMLDLAYEE 219

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VM+ +G  VE+QG+AE   F+++    +L+LA    A L + Q + + 
Sbjct: 220 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 277


>gi|83945049|ref|ZP_00957415.1| ribonuclease PH [Oceanicaulis alexandrii HTCC2633]
 gi|83851831|gb|EAP89686.1| ribonuclease PH [Oceanicaulis alexandrii HTCC2633]
          Length = 238

 Score =  330 bits (848), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 113/240 (47%), Positives = 161/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GRQ + +R +S     S YAEGSCL+ FG+T +L TA++E+ VP W+R    GW+T
Sbjct: 1   MRPEGRQPDALRPLSFEMGWSPYAEGSCLISFGNTKVLCTASVEDNVPPWLRGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            EY MLPR+T  R +RE  SG+  GR+QEIQR+IGR+LR+ VDL ALG RQI++DCDV+Q
Sbjct: 61  GEYSMLPRATHQRTRREVQSGKPSGRTQEIQRLIGRSLRAAVDLKALGERQIVVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAW+AL   + ++ +       +  +   +AA+S G++ G  ++DL+Y 
Sbjct: 121 ADGGTRTAAITGAWLALKAAVAYLME--EDVLKADPVIAQIAAVSAGVVNGDCVLDLEYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   + DANFV+T +G ++EVQ +AE A  +Q+ F  +  LA+  ++DL   Q   +  
Sbjct: 179 EDRVAETDANFVLTSTGGVIEVQATAEDAPMTQEQFDQIFALARKGVSDLCAAQLKALGQ 238


>gi|303231308|ref|ZP_07318044.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514038|gb|EFL56044.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-049-V-Sch6]
          Length = 257

 Score =  330 bits (848), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 121/240 (50%), Positives = 161/240 (67%), Gaps = 4/240 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R   Q+R I +TR  ++YAEGS L++ G T ++ TAT+EE VP W++ +  GW+T
Sbjct: 1   MRSDNRTAGQLRPIKITRHFTEYAEGSVLIECGKTKVICTATIEENVPRWLKGSGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY +LPRST  RV REA  G+Q GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYSLLPRSTKTRVSREAARGKQTGRTVEIQRLIGRALRAVVDLKALGERSITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D +        KF     +    AAIS G+    PI DL Y 
Sbjct: 121 ADGGTRTASITGAFVALVDAIDFTFGGFGKF----PITDFCAAISVGIGPEGPITDLCYE 176

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N V T +G+++EVQG+ E  TFS+D    +L+LA+    +L+ +Q++V+ +
Sbjct: 177 EDSAAVVDMNVVRTGAGNLIEVQGTGEHGTFSRDELNQLLDLAESATDELMAVQRNVLGS 236


>gi|294679008|ref|YP_003579623.1| ribonuclease PH [Rhodobacter capsulatus SB 1003]
 gi|294477828|gb|ADE87216.1| ribonuclease PH [Rhodobacter capsulatus SB 1003]
          Length = 237

 Score =  330 bits (848), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 127/239 (53%), Positives = 172/239 (71%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR    +R IS+   V+K+AEGS L+K GDTH+L TAT+E+K P +++ +  GW+T
Sbjct: 1   MRPSGRNLADIRSISIETGVTKHAEGSVLIKMGDTHVLCTATIEDKAPSFLKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA +G+Q GR+QEIQR+IGRALR+ +D SALG RQI++DCDV+Q
Sbjct: 61  AEYGMLPRATNSRNRREAAAGKQSGRTQEIQRLIGRALRAGIDRSALGERQIVVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +    +   +S  +  HVAAISCG+  G PI DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKL--LKSGLIVSDPIIDHVAAISCGIYAGQPIADLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD NF++T  G +VEVQ +AE +TFS++    +L+LA+  +A L+  QK  I+
Sbjct: 179 EDSEAGVDGNFILTGRGRLVEVQMTAEGSTFSREEMTKLLDLAEAGVAQLVAAQKAAIA 237


>gi|302037201|ref|YP_003797523.1| ribonuclease PH [Candidatus Nitrospira defluvii]
 gi|300605265|emb|CBK41598.1| Ribonuclease PH [Candidatus Nitrospira defluvii]
          Length = 247

 Score =  330 bits (848), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 116/239 (48%), Positives = 164/239 (68%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R + +TR  +K+AEGS L++ GDT ++ TA++EEKVP +++    GW+TA
Sbjct: 9   RIDGRRRDQIRPVKVTRNFTKHAEGSVLIEMGDTKVICTASIEEKVPPFLKGKGAGWVTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T +R  RE+V G+QGGR+ EIQR++GRALR+V+D   LG R I IDCDVIQA
Sbjct: 69  EYAMLPRATHDRSPRESVKGKQGGRTLEIQRLVGRALRAVIDTGRLGERTIWIDCDVIQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITG+++AL D +  +            L  ++AAIS G + G  +VDL Y E
Sbjct: 129 DGGTRTASITGSFIALADAVGVLRK--KDLIKVNPLTDYLAAISIGKVGGQVMVDLAYEE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  +VD N VMT +G  VEVQG+AE+  F++      L+L    I +L+ LQK +I +
Sbjct: 187 DSHAEVDLNLVMTGAGQYVEVQGTAEKTPFNKKDMDEFLDLGWGAIRELVDLQKSLIGS 245


>gi|85374029|ref|YP_458091.1| ribonuclease PH [Erythrobacter litoralis HTCC2594]
 gi|122544511|sp|Q2NAJ7|RNPH_ERYLH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|84787112|gb|ABC63294.1| RNase PH [Erythrobacter litoralis HTCC2594]
          Length = 237

 Score =  330 bits (848), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 120/237 (50%), Positives = 162/237 (68%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  ++MR I++    +K+AEGSCL+ FGDT +L TA++EE++P W+R    GW+T
Sbjct: 1   MRPSGRAPDEMRAITIETGYTKHAEGSCLIGFGDTKVLCTASVEERLPPWLRGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            EY MLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVDL  LG RQI +DCDVIQ
Sbjct: 61  GEYSMLPRATHTRGNREAARGKQSGRTQEIQRLIGRSLRAVVDLEKLGERQITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GAW+AL   +  + +          + G +AAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASISGAWIALRLAVSGLMEQGQI--KDDPITGKIAAISCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS  D DANFV+ + G I E Q +AE AT+ ++    +L LA+   A + K Q + 
Sbjct: 179 EDSNADADANFVLIEGGKIAEAQATAEGATYDEEGLMRLLRLAQIGCAQIFKSQDEA 235


>gi|300859074|ref|YP_003784057.1| ribonuclease PH [Corynebacterium pseudotuberculosis FRC41]
 gi|300686528|gb|ADK29450.1| ribonuclease PH [Corynebacterium pseudotuberculosis FRC41]
 gi|302206777|gb|ADL11119.1| Ribonuclease PH [Corynebacterium pseudotuberculosis C231]
 gi|302331330|gb|ADL21524.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 1002]
 gi|308277022|gb|ADO26921.1| Ribonuclease PH [Corynebacterium pseudotuberculosis I19]
          Length = 247

 Score =  330 bits (848), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 108/238 (45%), Positives = 151/238 (63%), Gaps = 3/238 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +QMR + +TR  +    GS LV+FG+T ++ TA+ E  VP + R++  GW+TA
Sbjct: 11  RADGRAVDQMRTVKITRGFTTNPAGSVLVEFGNTRVMCTASAEIGVPRFKRDSGEGWLTA 70

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R  RE++ G+  GR+ EI R+IGR+LR+ VDLS LG   I IDCDV+QA
Sbjct: 71  EYAMLPAATLDRNPRESMRGKVKGRTHEISRLIGRSLRAAVDLSELGENTINIDCDVLQA 130

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D + H++           LK  VAA+S G++ G   +DL Y E
Sbjct: 131 DGGTRTASITGAYVALADAISHLQK--QGVVPGNPLKDPVAAVSVGVIDGAVCLDLPYEE 188

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  DVD N +M  +G  VE+QG+ E  TF +D    +L+ A+    +L+  QK  + 
Sbjct: 189 DSRADVDMNVIM-QNGRFVEIQGTGEHNTFDRDELARILDFAEKGCTELVAAQKAALG 245


>gi|227542822|ref|ZP_03972871.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227181448|gb|EEI62420.1| ribonuclease PH [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 237

 Score =  330 bits (848), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 103/238 (43%), Positives = 156/238 (65%), Gaps = 7/238 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++RE+ +TR  +    GS LV+FG T ++ TA+++E VP + +++  GW+TA
Sbjct: 7   RADGRATDELREVRITRNFTTNPAGSVLVEFGRTRVMCTASVQEGVPRFKKDSGEGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V G+  GR+QEI R++GR+LR+ +DL+ LG   I +DCDV+QA
Sbjct: 67  EYAMLPAATNERNPRESVKGKVKGRTQEISRLVGRSLRAAIDLTKLGEYTIALDCDVLQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D L            +  L   VAAIS G++ G+P +DL Y E
Sbjct: 127 DGGTRTASITGAYVALADALAS-------IDKTDALLPPVAAISVGLIDGHPCLDLPYEE 179

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N +M ++G  VE+QG+ E   FS++    +L+L +    +L++ QK+ ++
Sbjct: 180 DSRAEVDMNIIMKENGTFVEIQGTGEHGDFSREQLGTLLDLGEKGCRELVEKQKEALA 237


>gi|282849100|ref|ZP_06258485.1| tRNA nucleotidyltransferase [Veillonella parvula ATCC 17745]
 gi|282580804|gb|EFB86202.1| tRNA nucleotidyltransferase [Veillonella parvula ATCC 17745]
          Length = 251

 Score =  330 bits (848), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 123/239 (51%), Positives = 161/239 (67%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R   Q+R I +TR  ++YAEGS L++ G T ++ TAT+E+ VP W++ +  GW+T
Sbjct: 1   MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATVEDSVPRWLKGSGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY +LPRST  RV REA  G+Q GR+ EIQR+IGRALR+VVDL ALG R I IDCDVIQ
Sbjct: 61  AEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D +      + KF     +    AAIS G+    PI DL Y 
Sbjct: 121 ADGGTRTASITGAFVALVDAVDFTFGGAGKF----PITNFCAAISVGIGPDGPITDLCYE 176

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD N V T SG++VEVQG+ E  TF++D   A+L+LA+    +L+  Q++V+ 
Sbjct: 177 EDSAAIVDMNVVRTGSGNMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQREVLG 235


>gi|323705986|ref|ZP_08117556.1| ribonuclease PH [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534600|gb|EGB24381.1| ribonuclease PH [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 259

 Score =  330 bits (847), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 113/239 (47%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I +TR  ++YAEGS L++ G+T ++ TA++E+KVP + + T  GWIT+
Sbjct: 3   RVDGRDSRSLRPIKITRNFNRYAEGSVLIEVGNTKVICTASIEDKVPPFQKGTGKGWITS 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY M+PR+T  R +RE+  G+Q GR+ EIQR+IGRALR+VVDL ALG + I IDCDVIQA
Sbjct: 63  EYSMIPRATETRTQRESTKGKQSGRTMEIQRLIGRALRAVVDLDALGEKTIWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITG++VAL D +  +++     +L   +K  VAA+S G++    ++DL Y E
Sbjct: 123 DGGTRTASITGSFVALVDAMNKLKEKGAISKL--PIKSFVAAVSVGIVGNEKLLDLCYLE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS   VD N VMTD G  +E+QG+ E   FS+  F  +L LA++ +  +I++QK+ + +
Sbjct: 181 DSNAHVDMNIVMTDKGEFIEIQGTGEGGPFSKSDFSELLELAEEGLNKIIQVQKESLGD 239


>gi|163791539|ref|ZP_02185943.1| ribonuclease PH/Ham1 protein [Carnobacterium sp. AT7]
 gi|159873175|gb|EDP67275.1| ribonuclease PH/Ham1 protein [Carnobacterium sp. AT7]
          Length = 432

 Score =  330 bits (847), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 114/243 (46%), Positives = 156/243 (64%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+ ++ R +++     K+ EGS LV FGDT ++  AT+E KVP +++    GW+ 
Sbjct: 1   MRADGRKNDENRLVTIETNYLKHPEGSVLVSFGDTKVICNATIETKVPRFLKGMGSGWVH 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+I R+LRS +DL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNIREAAKGKLSGRTMEIQRLIARSLRSCIDLEALGERSITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   +Q + D          +K +VAAIS G+L  G  ++DL+Y
Sbjct: 121 ADGGTRTASITGAFVALKLAIQTLLDSGELAL--SPIKENVAAISVGILEDGQAVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  +VD N VMT  G  VE+QG+ E ATFS +    +L   K  I +LI++Q +  +
Sbjct: 179 LEDSAANVDMNLVMTSGGQFVEIQGTGEEATFSSEQLAVLLEFGKKGIKELIQVQDNAFN 238

Query: 240 NEV 242
             +
Sbjct: 239 QAL 241


>gi|163732970|ref|ZP_02140414.1| ribonuclease PH [Roseobacter litoralis Och 149]
 gi|161393505|gb|EDQ17830.1| ribonuclease PH [Roseobacter litoralis Och 149]
          Length = 237

 Score =  330 bits (847), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 121/237 (51%), Positives = 170/237 (71%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ N+MR +S+    +K+AEGS L+K GDTH+L TAT+E++VP +I+ +  GW+T
Sbjct: 1   MRPSGRELNEMRAVSIETGFTKHAEGSALIKIGDTHVLCTATIEDRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++RE+ +G+QGGR+ EIQR+IGR+LR+ VD  ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATNTRMRRESTAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG W+AL   +  +    +    S  L   VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWIALRLAVNKLMKAGDVI--SDPLVDPVAAISCGIYAGQPVMDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS   VD NF+MT +  ++EVQ SAE +TFS+D    +++LA+  + +L+  Q+  
Sbjct: 179 EDSEAGVDGNFIMTGTKRLIEVQMSAEGSTFSRDQMNQLMDLAEKGVGELVTAQRAA 235


>gi|238020106|ref|ZP_04600532.1| hypothetical protein VEIDISOL_01987 [Veillonella dispar ATCC 17748]
 gi|237863630|gb|EEP64920.1| hypothetical protein VEIDISOL_01987 [Veillonella dispar ATCC 17748]
          Length = 251

 Score =  330 bits (847), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 123/240 (51%), Positives = 161/240 (67%), Gaps = 4/240 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R   Q+R I +TR  ++YAEGS L++ G T ++ TAT+E+ VP W++ +  GW+T
Sbjct: 1   MRSDNRTAGQLRPIKITRNFTEYAEGSVLIECGKTKVICTATVEDSVPRWLKGSGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY +LPRST  RV REA  G+Q GR+ EIQR+IGRALR+VVDL ALG R I IDCDVIQ
Sbjct: 61  AEYSLLPRSTQTRVSREAAKGKQTGRTVEIQRLIGRALRAVVDLEALGERSITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D +      + KF     +    AAIS G+    PI DL Y 
Sbjct: 121 ADGGTRTASITGAFVALVDAVDFTFGGAGKF----PITDFCAAISVGIGPEGPITDLCYE 176

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N V T SG++VEVQG+ E  TF++D   A+L+LA+    +L+  Q++V+  
Sbjct: 177 EDSAAIVDMNVVRTGSGNMVEVQGTGEHGTFNRDELNALLDLAEAATDELMAKQREVLGT 236


>gi|253583583|ref|ZP_04860781.1| ribonuclease PH [Fusobacterium varium ATCC 27725]
 gi|251834155|gb|EES62718.1| ribonuclease PH [Fusobacterium varium ATCC 27725]
          Length = 254

 Score =  330 bits (847), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 109/240 (45%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ + +REI +T+  + YAEGS L++FG+T ++ TA++ +KVP ++R    GW+T
Sbjct: 17  LREDGRKVDSLREIKITKDFNLYAEGSVLIEFGNTKVICTASVSDKVPPFMRGQGKGWLT 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+TG R +RE+  G+  GR+ EIQR+IGRALR+ VDL  LG R I IDCDVIQ
Sbjct: 77  AEYSMIPRATGERNQRESAKGKLSGRTMEIQRLIGRALRTAVDLDKLGERTITIDCDVIQ 136

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +I+G ++AL   ++ +    ++      +  +VAAIS G++ G P++DL Y 
Sbjct: 137 ADGGTRTTSISGGFIALALAVKKLMK--DRVLSVNPIVSNVAAISVGIVRGTPMLDLMYT 194

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  +VD N VM   G  VEVQG+ E AT+++     +++LA+  I ++I+LQ ++I  
Sbjct: 195 EDSAAEVDMNVVMNGKGEFVEVQGTGEEATYTRKELNELIDLAEVGIKEIIRLQNEIIGE 254


>gi|291619462|ref|YP_003522204.1| Rph [Pantoea ananatis LMG 20103]
 gi|291154492|gb|ADD79076.1| Rph [Pantoea ananatis LMG 20103]
 gi|327395785|dbj|BAK13207.1| ribonuclease Rph [Pantoea ananatis AJ13355]
          Length = 238

 Score =  330 bits (847), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 121/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  +Q+R ++LTR  +K+AEGS LV+FG+T +L TAT++E VP +++    GW+T
Sbjct: 1   MRPAGRSAHQVRPVTLTRNYTKHAEGSVLVEFGETKVLCTATVDEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMAREAAKGKQGGRTLEIQRLIARSLRAAVDLKVLGEYTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +         +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKLVASGKL--KANPMKGMVAAVSVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +   A+L LA+  I +LI+ QK  +  
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIEELIQAQKAALEK 238


>gi|146309763|ref|YP_001174837.1| ribonuclease PH [Enterobacter sp. 638]
 gi|166991085|sp|A4W506|RNPH_ENT38 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145316639|gb|ABP58786.1| RNAse PH [Enterobacter sp. 638]
          Length = 238

 Score =  330 bits (847), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 124/240 (51%), Positives = 161/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  NQ+R ++LTR  +K+AEGS LV FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPSGRSANQVRPVTLTRNYTKHAEGSVLVAFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKVLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +       +    +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKLIAAGKLKK--NPMKGMVAAVSVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  + N
Sbjct: 179 EDSVAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVTTQKAALQN 238


>gi|314967394|gb|EFT11493.1| ribonuclease PH [Propionibacterium acnes HL082PA2]
 gi|315093635|gb|EFT65611.1| ribonuclease PH [Propionibacterium acnes HL060PA1]
 gi|327325475|gb|EGE67279.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL103PA1]
          Length = 244

 Score =  330 bits (846), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ + R     AEGS LV FG T +L  A++ E VP W + +  GW+TA
Sbjct: 6   RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+ GGR+ EI R++GR+LR+VVD  ALG   II+DCDV+QA
Sbjct: 66  EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +        +S+ + G V AIS G++ G P++DL Y E
Sbjct: 126 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VM+ +G  VE+QG+AE   F+++    +L+LA    A L + Q + + 
Sbjct: 184 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 241


>gi|189425094|ref|YP_001952271.1| ribonuclease PH [Geobacter lovleyi SZ]
 gi|226736912|sp|B3E3D2|RNPH_GEOLS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189421353|gb|ACD95751.1| ribonuclease PH [Geobacter lovleyi SZ]
          Length = 238

 Score =  330 bits (846), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 159/235 (67%), Gaps = 2/235 (0%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
           GR  + +R I++TR   K+ EG+ LV+FGDT ++ TA++EE VP ++R    GW+TAEY 
Sbjct: 5   GRGLSDLRPITMTRHFIKHPEGAVLVEFGDTRVICTASVEESVPPFLRGKGTGWVTAEYS 64

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           MLPR+T  R  REA  G+Q GR+ EIQR+IGR+LR+V D++ LG R I +DCDVIQADGG
Sbjct: 65  MLPRATHTRSSREAAKGKQSGRTLEIQRLIGRSLRAVTDMTKLGERTIYLDCDVIQADGG 124

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
           TRTA+ITGA+VAL D +  +            LK  VAA+S G++ G  ++DLDY EDS+
Sbjct: 125 TRTASITGAYVALVDAVSAL--LVQGKITGNPLKEAVAAVSVGIVDGQAVLDLDYQEDSS 182

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            +VD NFVMT SG  VEVQG+AE   F+ +   AM +LA   I  L   Q++ ++
Sbjct: 183 AEVDMNFVMTSSGRFVEVQGTAEAEPFTLEQMDAMRSLAMTGINQLFTYQQEALA 237


>gi|251773010|gb|EES53566.1| ribonuclease PH [Leptospirillum ferrodiazotrophum]
          Length = 238

 Score =  330 bits (846), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 117/238 (49%), Positives = 161/238 (67%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR  +Q+R +S+    ++YAEGS L++ G TH+L T +LEEKVP ++++   GW+T
Sbjct: 1   MRSDGRTSDQLRTLSIDPSPNRYAEGSALIRMGFTHVLATVSLEEKVPPFLKDQGRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LRSVV+   +G R   IDCDVIQ
Sbjct: 61  AEYGMLPRSTHERSPREAARGKQSGRTQEIQRLIGRSLRSVVNFEKMGVRTATIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+I GA+VAL     +++           L  ++AA+S G++ G P +DL Y 
Sbjct: 121 ADGGTRCASIGGAFVALALAFSNLKKVG--VIAESPLVDYLAAVSVGIVDGEPCLDLCYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  DVD N VMT  G +VEVQG+AE  +FS+     +L+LA   I++++ LQK ++
Sbjct: 179 EDSAADVDMNVVMTGKGELVEVQGTAEHRSFSRKEMDRLLDLAWKGISEIVDLQKRLV 236


>gi|157964776|ref|YP_001499600.1| ribonuclease PH [Rickettsia massiliae MTU5]
 gi|157844552|gb|ABV85053.1| Ribonuclease PH [Rickettsia massiliae MTU5]
          Length = 250

 Score =  330 bits (846), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 134/238 (56%), Positives = 169/238 (71%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ NQ+R ISL       AEGSCL+K G+TH++ +AT E  VP ++R    GWIT
Sbjct: 12  MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 71

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST  R+KREA  G+QGGR+QEIQR+IGRA+R V+D+  LG RQIIIDCDVI 
Sbjct: 72  AEYGMLPGSTSQRIKREAALGKQGGRTQEIQRLIGRAMRCVIDVKKLGERQIIIDCDVIN 131

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VALH  ++ +     +      L   +AAISCG+  G  I+DLDY 
Sbjct: 132 ADGGTRTAAITGSYVALHLAIRSLMK--KRVLKVNPLISQIAAISCGIYKGEAILDLDYL 189

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  DVD+NFV   +G+++EVQG+AE+  FS+  F AML LAK   A+L KLQ  V+
Sbjct: 190 EDSDADVDSNFVFAGNGNLIEVQGTAEKNPFSEGQFLAMLKLAKGGAAELFKLQNQVL 247


>gi|95929460|ref|ZP_01312203.1| ribonuclease PH [Desulfuromonas acetoxidans DSM 684]
 gi|95134576|gb|EAT16232.1| ribonuclease PH [Desulfuromonas acetoxidans DSM 684]
          Length = 240

 Score =  330 bits (846), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 121/240 (50%), Positives = 160/240 (66%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   RQ +Q+R ++  R  ++YAEGS LV FGDT +L  AT+EE VP ++R    GW+T
Sbjct: 3   IRADQRQPDQLRPVTFQRGYTRYAEGSVLVSFGDTVVLCNATVEESVPPFMRGEGRGWVT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  REA  G+ GGR+ EIQR+IGRALR+V+D  ALG R I +DCDV+Q
Sbjct: 63  AEYAMLPRATHSRNSREAARGKVGGRTHEIQRLIGRALRAVIDFDALGERTIRLDCDVLQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL + +  +    +       LK  +AAIS G++ G P++DL+YG
Sbjct: 123 ADGGTRTASITGAYVALAEAVNGL--LRDGVLTVSPLKDSLAAISVGIVDGQPLLDLNYG 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  DVD N VMT SG  VEVQG+AE   F+     AM  LA    A+L  +Q+  +  
Sbjct: 181 EDSKADVDMNIVMTGSGAFVEVQGTAEAEPFTAQQLDAMRALAMKGCAELAGMQRAALEG 240


>gi|332798597|ref|YP_004460096.1| Ribonuclease PH [Tepidanaerobacter sp. Re1]
 gi|332696332|gb|AEE90789.1| Ribonuclease PH [Tepidanaerobacter sp. Re1]
          Length = 238

 Score =  330 bits (846), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 171/239 (71%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +++R I++TR  +KYAEGS L++ GDT ++ TAT++EKVP ++R    GWITA
Sbjct: 3   RVDGRANDEIRPITITRNFNKYAEGSVLIEAGDTKVVCTATVDEKVPPFLRGKGQGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE +  R  GR+ EIQR+IGRALRSVVDLSALG R I +DCDVIQA
Sbjct: 63  EYSMLPRATEVRNIRETL--RPSGRTMEIQRLIGRALRSVVDLSALGERTIWLDCDVIQA 120

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA++AL D ++ ++D  NK   +  +K +VAAIS G++ G  ++DL + E
Sbjct: 121 DGGTRTASITGAFIALGDAIRTLKD--NKEIETNPIKSYVAAISAGIVDGEKMLDLRFEE 178

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS   VD N VMTD G IVE+QG+ E   F++     +++LA   I++L+ +QK ++ +
Sbjct: 179 DSRAQVDMNLVMTDEGQIVEIQGTGEAFPFTRQDMNDLIDLAFKGISELVCIQKKLLLD 237


>gi|311277436|ref|YP_003939667.1| ribonuclease PH [Enterobacter cloacae SCF1]
 gi|308746631|gb|ADO46383.1| ribonuclease PH [Enterobacter cloacae SCF1]
          Length = 238

 Score =  330 bits (846), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  +Q+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSAHQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L ++         +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNNLVAAGKL--KTNPMKGMVAAVSVGIVDGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  + N
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALEN 238


>gi|134300519|ref|YP_001114015.1| ribonuclease PH [Desulfotomaculum reducens MI-1]
 gi|172044340|sp|A4J7Y7|RNPH_DESRM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|134053219|gb|ABO51190.1| RNAse PH [Desulfotomaculum reducens MI-1]
          Length = 245

 Score =  330 bits (846), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 118/239 (49%), Positives = 169/239 (70%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR++ Q+R + +T   +KYAEGS L++ GDT ++ TAT+EE+VP +++    GW+TA
Sbjct: 3   RVDGRKQGQIRPVRMTPNYNKYAEGSVLIEVGDTRVICTATVEERVPPFLKGLGKGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+TG+R  REA  G+ GGR+ EIQR+IGRALRSVV+L ALG R + +DCDVIQA
Sbjct: 63  EYSMLPRATGSRTIREAARGKLGGRTMEIQRLIGRALRSVVNLEALGERSLTMDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA+   L  + +     ++   +   +AA S G++ G P++DL Y E
Sbjct: 123 DGGTRTASITGAYVAMIFALNRLVEQGMLEKI--PVSDFIAATSVGIVKGRPVIDLCYAE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  +VD N VMT +G  VE+QG+ E ATFS++    +L+LA   I +L K+Q+ V+ +
Sbjct: 181 DSVAEVDMNVVMTGTGRFVEIQGTGEEATFSREEMNQLLDLAAAGIEELNKVQRQVLGD 239


>gi|149184525|ref|ZP_01862843.1| RNase PH [Erythrobacter sp. SD-21]
 gi|148831845|gb|EDL50278.1| RNase PH [Erythrobacter sp. SD-21]
          Length = 238

 Score =  330 bits (846), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 118/237 (49%), Positives = 163/237 (68%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  ++MR I++    +K+AEGSCL+ FG+T +L TA++EE++P W+R    GW+T
Sbjct: 1   MRPSGRAPDEMRAITIETGYTKHAEGSCLISFGETKVLCTASVEERIPPWLRGRGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            EY MLPR+T  R +REA  G+Q GR+QEIQR+IGR+LR+VVD   LG RQI +DCDVIQ
Sbjct: 61  GEYSMLPRATHTRGQREAAKGKQSGRTQEIQRLIGRSLRAVVDHKKLGERQITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GAWVAL   +  +    +  +    +   VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASISGAWVALRLAVNELMKSGDLVE--DPITAKVAAVSCGIYKGTPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS  D DANFV+ + G I E Q +AE A + ++ F  +L LA+   AD+ + Q + 
Sbjct: 179 EDSNADADANFVLIEGGKIAEAQATAEGAPYDEEAFLRLLRLAQMGCADIFRAQDEA 235


>gi|313835876|gb|EFS73590.1| ribonuclease PH [Propionibacterium acnes HL037PA2]
 gi|314927124|gb|EFS90955.1| ribonuclease PH [Propionibacterium acnes HL044PA1]
 gi|314970767|gb|EFT14865.1| ribonuclease PH [Propionibacterium acnes HL037PA3]
 gi|328906032|gb|EGG25807.1| tRNA nucleotidyltransferase [Propionibacterium sp. P08]
          Length = 252

 Score =  330 bits (846), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 110/238 (46%), Positives = 154/238 (64%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ + R     AEGS LV FG T +L  A++ E VP W + +  GW+TA
Sbjct: 14  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 73

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+ GGR+ EI R++GR+LR+V+D  ALG   II+DCDV+QA
Sbjct: 74  EYEMLPRATNERSGRESRRGKIGGRTHEISRLVGRSLRAVIDDKALGENTIILDCDVLQA 133

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +          + + G V AIS G++ G P++DL Y E
Sbjct: 134 DGGTRTASITGAYVALVDAVNWLRKRGGLV--GEPITGSVQAISVGVVGGVPMLDLAYEE 191

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VM+ SG  VE+QG+AE A F++D    +L+LA      L + Q +V+ 
Sbjct: 192 DSRADTDMNVVMSGSGDFVEIQGTAEGAPFNRDLLNELLDLAAGGCVTLKQAQSEVLG 249


>gi|15606253|ref|NP_213631.1| RNase PH [Aquifex aeolicus VF5]
 gi|6094114|sp|O67069|RNPH_AQUAE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|37928163|pdb|1UDN|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
           From Aquifex Aeolicus
 gi|2983451|gb|AAC07032.1| RNase PH [Aquifex aeolicus VF5]
          Length = 255

 Score =  330 bits (846), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 115/236 (48%), Positives = 157/236 (66%), Gaps = 2/236 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+E+Q+R +S+ R   +Y EGSCL+ FG T ++ TA++ E VP W++    GWIT
Sbjct: 1   MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V GR GGR+ EIQRMIGRA+R+ V+L+ +G R I +DCDVIQ
Sbjct: 61  AEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VA+ D +  +            +K  VAA+S G++    ++DL++ 
Sbjct: 121 ADGGTRTAAITGAFVAVADAIIKLHK--EGIIEETPIKDFVAAVSVGIVNDRILLDLNFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           EDS   VD N V T SG + EV    E  +F++D    ML+LA+  I +LI+LQK 
Sbjct: 179 EDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKK 234


>gi|253575653|ref|ZP_04852989.1| ribonuclease PH [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844991|gb|EES73003.1| ribonuclease PH [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 252

 Score =  330 bits (846), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 114/239 (47%), Positives = 160/239 (66%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GRQ ++ R ++LT  V+KYAEGS  ++ GDT ++ TAT+EEKVPM+++    GW+T
Sbjct: 1   MRSNGRQADERRAMNLTVNVNKYAEGSVYIEVGDTKVMCTATVEEKVPMFMKGQGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+I RALRSVVDL ALG R I IDCDV+Q
Sbjct: 61  AEYSMLPRATQTRNQRESARGKLSGRTMEIQRLIARALRSVVDLQALGERSITIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITGA+VAL   +  +       +    +   +A++S G++    ++DL+Y 
Sbjct: 121 ADGGTRTTSITGAFVALALAMHKIAQKHALPKF--PITDFLASVSVGIVGEDTLLDLNYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD N VMT +G  VEVQG+ E   FS+     ML LA+  I ++I+ Q++ + 
Sbjct: 179 EDSKAKVDMNVVMTGNGQFVEVQGTGEENPFSRAELDHMLELAEKGIREMIEQQREALG 237


>gi|260599940|ref|YP_003212511.1| ribonuclease PH [Cronobacter turicensis z3032]
 gi|260219117|emb|CBA34472.1| Ribonuclease PH [Cronobacter turicensis z3032]
          Length = 240

 Score =  330 bits (846), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 123/240 (51%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  +++R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 3   MRPAGRSASEVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDVIQ
Sbjct: 63  AEYGMLPRATHTRNAREAAKGKQGGRTLEIQRLIARALRAAVDLKALGEFTITLDCDVIQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +         +  LKG VAA+S G++ G  + DL+Y 
Sbjct: 123 ADGGTRTASITGACVALADALNALVAAGKL--KTNPLKGMVAAVSVGIVNGEAVCDLEYV 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 181 EDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHEELLDLLALARGGIESIVASQKAALAN 240


>gi|320655608|gb|EFX23536.1| ribonuclease PH [Escherichia coli O55:H7 str. 3256-97 TW 07815]
          Length = 236

 Score =  330 bits (846), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 126/240 (52%), Positives = 167/240 (69%), Gaps = 4/240 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQ--GWIT 58

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 59  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 118

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D LQ + +  N    +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 119 ADGGTRTASITGACVALADALQKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 176

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 177 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 236


>gi|253701667|ref|YP_003022856.1| ribonuclease PH [Geobacter sp. M21]
 gi|251776517|gb|ACT19098.1| ribonuclease PH [Geobacter sp. M21]
          Length = 239

 Score =  329 bits (845), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 121/238 (50%), Positives = 166/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  N +RE+ +TR   K+AEGS LV+FGDT ++  AT+E +VP +++    GW+T
Sbjct: 2   IRREGRAANALREVKITRNYLKHAEGSVLVEFGDTKVICNATVEARVPSFLKGKGSGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I+IDCDVIQ
Sbjct: 62  AEYCMLPRATHTRNQRESAKGKLSGRTHEIQRLIGRSLRAVVDLELLGERSIVIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D LQ++    +  +    L+  VAA+S G++ G P +DLDY 
Sbjct: 122 ADGGTRTASITGAYVALADALQNLVKAGDLEK--SPLREAVAAVSVGIVDGVPFLDLDYP 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDST +VD NFVMT S   VEVQG+AE   F+ D   AM + A   ++ L ++Q++ +
Sbjct: 180 EDSTAEVDMNFVMTSSMRFVEVQGTAEAEPFTLDQMDAMRSHAMLGLSRLFEIQQEAL 237


>gi|314956852|gb|EFT01006.1| ribonuclease PH [Propionibacterium acnes HL027PA1]
          Length = 254

 Score =  329 bits (845), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ + R     AEGS LV FG T +L  A++ E VP W + +  GW+TA
Sbjct: 16  RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 75

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+ GGR+ EI R++GR+LR+VVD  ALG   II+DCDV+QA
Sbjct: 76  EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 135

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +        +S+ + G V AIS G++ G P++DL Y E
Sbjct: 136 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYEE 193

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VM+ +G  VE+QG+AE   F+++    +L+LA    A L + Q + + 
Sbjct: 194 DSRADTDVNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 251


>gi|303229137|ref|ZP_07315938.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-134-V-Col7a]
 gi|302516150|gb|EFL58091.1| tRNA nucleotidyltransferase [Veillonella atypica ACS-134-V-Col7a]
          Length = 257

 Score =  329 bits (845), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 162/240 (67%), Gaps = 4/240 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R   Q+R I +TR  ++YAEGS L++ G T ++ TAT+EE VP W++ +  GW+T
Sbjct: 1   MRSDNRTAGQLRPIKITRHFTEYAEGSVLIECGKTKVICTATIEENVPRWLKGSSQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY +LPRST  RV REA  G+Q GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYSLLPRSTKTRVSREAARGKQTGRTVEIQRLIGRALRAVVDLKALGERSITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D + +      KF     +    AAIS G+    PI DL Y 
Sbjct: 121 ADGGTRTASITGAFVALVDAIDYTFGGFGKF----PITDFCAAISVGIGPEGPITDLCYE 176

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N V T +G+++EVQG+ E  TFS+D    +L+LA+    +L+ +Q+DV+ +
Sbjct: 177 EDSAAVVDMNVVRTGAGNLIEVQGTGEHGTFSRDELNQLLDLAESATDELMAVQRDVLGS 236


>gi|61215895|sp|Q6A759|RNPH_PROAC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
          Length = 244

 Score =  329 bits (845), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R++ + R     AEGS LV FG T +L  A++ E VP W + +  GW+TA
Sbjct: 6   RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKGSGLGWVTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+ GGR+ EI R++GR+LR+VVD  ALG   II+DCDV+QA
Sbjct: 66  EYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +        +S+ + G V AIS G++ G P++DL Y E
Sbjct: 126 DGGTRTASITGAYVALIDAVNWLR--GRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYKE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VM+ +G  VE+QG+AE   F+++    +L+LA    A L + Q + + 
Sbjct: 184 DSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEALG 241


>gi|326330800|ref|ZP_08197101.1| tRNA nucleotidyltransferase [Nocardioidaceae bacterium Broad-1]
 gi|325951330|gb|EGD43369.1| tRNA nucleotidyltransferase [Nocardioidaceae bacterium Broad-1]
          Length = 235

 Score =  329 bits (845), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 114/239 (47%), Positives = 152/239 (63%), Gaps = 7/239 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R I +TR    +A GS L++FG T +L  A+  E VP W + +  GW+TA
Sbjct: 4   RADGRADDELRPIKITRNWLDHAAGSVLIEFGKTRVLCAASASEGVPRWRKGSGLGWVTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R  RE+V G+ GGR+ EI R++GR+LR+V+D  ALG   I IDCDV+QA
Sbjct: 64  EYAMLPASTHERSSRESVKGKIGGRTHEISRLVGRSLRAVIDYKALGENTINIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +        +S+ L G VAAIS G++ G P +DL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVASLG-------VSKALTGSVAAISVGIIDGVPRLDLPYEE 176

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   + D N VMT  G  VEVQG+AE   F +    A+L L +   ADL KLQ+  ++ 
Sbjct: 177 DVRAETDMNIVMTGEGKFVEVQGTAEGVAFDRAELDALLALGEKGCADLTKLQEAALAG 235


>gi|197106932|ref|YP_002132309.1| ribonuclease PH [Phenylobacterium zucineum HLK1]
 gi|226736923|sp|B4RC87|RNPH_PHEZH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|196480352|gb|ACG79880.1| ribonuclease PH [Phenylobacterium zucineum HLK1]
          Length = 238

 Score =  329 bits (845), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 126/237 (53%), Positives = 168/237 (70%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R+ + +R ++L   V++YAEGSCL  FG T +L TA+LEE VP ++R    GW+T
Sbjct: 1   MRPSDRRPDLLRPVTLETGVNRYAEGSCLASFGHTKVLVTASLEEGVPPFLRGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA  G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATHTRGRREAAQGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITVDCDVVQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVAL    +++ +       +  +   VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGAWVALRLATRYLLE--EGVIATDPILDQVAAISCGVFSGTPVLDLDYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS  + DANFV+T +G IVE+Q + E+  FS+  F A+  LA+  I +L +LQ+  
Sbjct: 179 EDSNAEADANFVLTGAGDIVEIQATGEKRGFSEAEFEALFALARKGIGELCELQRAA 235


>gi|192362066|ref|YP_001980727.1| ribonuclease PH [Cellvibrio japonicus Ueda107]
 gi|226736897|sp|B3PGE8|RNPH_CELJU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|190688231|gb|ACE85909.1| ribonuclease PH [Cellvibrio japonicus Ueda107]
          Length = 239

 Score =  329 bits (844), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 120/226 (53%), Positives = 159/226 (70%), Gaps = 2/226 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR    +R I +TRR +K+AEGS L++FGDT ++ TA++   VP ++R    GW+TA
Sbjct: 3   RPSGRNPQALRPIRITRRYTKHAEGSVLIEFGDTKVICTASVVAGVPSFLRGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG R+ REA  G+Q GR+ EIQR+IGR+LR+ +DL+ALG   I +DCDVIQA
Sbjct: 63  EYGMLPRSTGTRMDREAARGKQQGRTVEIQRLIGRSLRAAIDLNALGENTIHLDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGAWVAL D +  ++         + LK  +A++S G+  G P++DLDY E
Sbjct: 123 DGGTRTASITGAWVALADAVAWLKAEGRV--TDEPLKRAIASVSVGIYQGVPVLDLDYPE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
           DS  D D N VM D G I+E+QG+AE   F++  F AML+LAK  I
Sbjct: 181 DSAADTDMNVVMGDDGGIIEIQGTAEAEPFTEAEFAAMLSLAKQGI 226


>gi|261418318|ref|YP_003252000.1| ribonuclease PH [Geobacillus sp. Y412MC61]
 gi|319767722|ref|YP_004133223.1| ribonuclease PH [Geobacillus sp. Y412MC52]
 gi|261374775|gb|ACX77518.1| ribonuclease PH [Geobacillus sp. Y412MC61]
 gi|317112588|gb|ADU95080.1| ribonuclease PH [Geobacillus sp. Y412MC52]
          Length = 256

 Score =  329 bits (844), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 118/241 (48%), Positives = 154/241 (63%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR   ++R + +     K+AEGS L++ GDT ++ TAT+EEKVP ++R    GWIT
Sbjct: 1   MRADGRSSCELRPVHIHPHYMKHAEGSVLIEIGDTKVICTATVEEKVPSFMRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+  GR+ EIQR+IGRALRSVVDL  LG R I IDCDVIQ
Sbjct: 61  AEYGMLPRATEQRNVREASKGKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VAL   L  + +      L   ++  +AA S G+   +  I+DLDY
Sbjct: 121 ADGGTRTASITGAYVALVLALAKLVEEGKLEAL--PIRDFLAATSVGIDPEHGVILDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED+   VD N VMT +G  VE+QG+ E A FS+     +L  A+  I  LI +Q+  + 
Sbjct: 179 NEDARAKVDMNVVMTGAGQFVEIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQRCALG 238

Query: 240 N 240
            
Sbjct: 239 E 239


>gi|304320412|ref|YP_003854055.1| ribonuclease PH [Parvularcula bermudensis HTCC2503]
 gi|303299314|gb|ADM08913.1| ribonuclease PH [Parvularcula bermudensis HTCC2503]
          Length = 234

 Score =  329 bits (844), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 128/235 (54%), Positives = 166/235 (70%), Gaps = 3/235 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  N+MR+++    V++YAEGSCLV+FG+TH+L TA+ EE VP W++N + GW+T
Sbjct: 1   MRPSGRAFNEMRDVTFELGVNRYAEGSCLVRFGNTHVLCTASFEENVPPWLKNQRRGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE   G   GR+QEIQR+IGR+LR+VVDL+ALG RQI +DCDV+Q
Sbjct: 61  AEYSMLPRATHTRGRRERDKG-PSGRTQEIQRLIGRSLRAVVDLNALGERQIQVDCDVLQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +VAL   +      S     +  L   VAAISCG+    P+VDLDY 
Sbjct: 120 ADGGTRTASITGGYVALKQAIDW--ALSAGVLTTSPLTDSVAAISCGLYNRAPVVDLDYD 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDST   DANFV T +G IVE+Q +AE   F+ D F A+++LAK    +L + QK
Sbjct: 178 EDSTAQADANFVFTGTGGIVEIQATAEGDPFADDEFAALVSLAKAACQELSEKQK 232


>gi|329936575|ref|ZP_08286311.1| ribonuclease [Streptomyces griseoaurantiacus M045]
 gi|329304090|gb|EGG47972.1| ribonuclease [Streptomyces griseoaurantiacus M045]
          Length = 244

 Score =  329 bits (844), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 115/229 (50%), Positives = 148/229 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R +SL R  SK+AEGS LV FGDT +L TA+  E VP W + +  GW+TA
Sbjct: 3   RIDGRAPEQLRPVSLARGWSKHAEGSVLVAFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 63  EYSMLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +   +         + L   V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVSWAQGRKLIKAGRRPLTDTVSAVSVGIVGGAPLLDLCYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           D   D D N V T  G  VEVQG+AE   F +    A+L+LA     DL
Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLAVAGCGDL 231


>gi|152967706|ref|YP_001363490.1| ribonuclease PH [Kineococcus radiotolerans SRS30216]
 gi|151362223|gb|ABS05226.1| ribonuclease PH [Kineococcus radiotolerans SRS30216]
          Length = 248

 Score =  329 bits (844), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 107/226 (47%), Positives = 144/226 (63%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R +++TR    +AEGS LV+FG T +L  A+  E VP W + +  GW+TA
Sbjct: 10  RADGRAVDELRPVTITRNWLDHAEGSVLVEFGRTRVLCAASFTEGVPRWRKGSGQGWVTA 69

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+VVD   LG   I++DCDV+QA
Sbjct: 70  EYAMLPRATNTRGDRESVKGKIGGRTHEISRLIGRSLRAVVDTKQLGENTIVLDCDVLQA 129

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAA+TGA+VAL D +             Q L G V+AIS G++ G P++DL Y E
Sbjct: 130 DGGTRTAAVTGAYVALADAISWARGQGIVKASRQPLTGSVSAISVGVVDGVPVLDLPYVE 189

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
           D   + D N V+T  G  VEVQG+AE   F +    A+L+LA    
Sbjct: 190 DVRAETDMNVVVTGDGRFVEVQGTAEGTPFDRAELDALLDLAVGGC 235


>gi|262201910|ref|YP_003273118.1| ribonuclease PH [Gordonia bronchialis DSM 43247]
 gi|262085257|gb|ACY21225.1| ribonuclease PH [Gordonia bronchialis DSM 43247]
          Length = 251

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 111/238 (46%), Positives = 157/238 (65%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R IS TR  + +  GS LV+FG T ++ TA++ + VP W R +  GW+TA
Sbjct: 4   RADGRADDELRPISFTRGFTSHPAGSVLVEFGQTRVMCTASVNDGVPPWRRGSGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V GR GGR+ EI R++GR+LR+ +DL ALG   I +DCDV+QA
Sbjct: 64  EYAMLPAATHERSSRESVKGRVGGRTHEISRLVGRSLRACIDLGALGENTIALDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +     K    Q L   +AA+S G++ G   +DL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVTWLRAAG-KLSDPQPLSCAIAAVSVGVVDGRVRLDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VEVQG+ E ATF++    A+L++A      L + Q++V++
Sbjct: 183 DSRAEVDMNVVATDAGTLVEVQGTGEGATFARSTLDALLDVAAVGTEKLFEAQREVLA 240


>gi|240170903|ref|ZP_04749562.1| ribonuclease PH [Mycobacterium kansasii ATCC 12478]
          Length = 259

 Score =  328 bits (843), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 108/238 (45%), Positives = 157/238 (65%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  ++   GS L++FG T +L TA++ E VP W + +  GW+TA
Sbjct: 4   REDGRLDDELRPVVITRGFTENPAGSVLIEFGRTKVLCTASVTEGVPRWRKGSGVGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V GR GGR+QEI R++GR+LR+ +DL+ALG   I +DCDV+QA
Sbjct: 64  EYAMLPSATHTRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAVDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AAIS G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVTYL-AAAGKLSDPRPLSCAIAAISVGVVDGRIRVDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VE+QG+ E ATF +     +L++A      L   Q++ ++
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDMALGACDKLFAAQREALA 240


>gi|83950767|ref|ZP_00959500.1| ribonuclease PH [Roseovarius nubinhibens ISM]
 gi|83838666|gb|EAP77962.1| ribonuclease PH [Roseovarius nubinhibens ISM]
          Length = 238

 Score =  328 bits (843), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 124/239 (51%), Positives = 174/239 (72%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  ++MR +S+   V+K+AEGSC+++ GDTH+L TAT+E++VP +I+ +  GW+T
Sbjct: 1   MRPSGRALDEMRPVSIETGVTKHAEGSCMIRVGDTHVLCTATIEDRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA +G+QGGR+ EIQR+IGR+LR+ VD  ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRSTTSRMRREASAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +Q +    +    S  L   V A+SCG+  G  ++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALKLAVQKLMKAGDV--TSDPLVDPVGAVSCGIYAGQLVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD NF+MT SG ++E Q SAE +TF++D    +L+LA+  + +L +LQ+  ++
Sbjct: 179 EDSEAGVDGNFIMTASGRMIEAQMSAEGSTFTRDQMTGLLDLAEKGVQELAELQRAAMN 237


>gi|237736793|ref|ZP_04567274.1| ribonuclease PH [Fusobacterium mortiferum ATCC 9817]
 gi|229420655|gb|EEO35702.1| ribonuclease PH [Fusobacterium mortiferum ATCC 9817]
          Length = 255

 Score =  328 bits (843), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 108/240 (45%), Positives = 160/240 (66%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +++R +  T+  + YAEGS L++ G+T ++ TAT+ +KVP +++N   GW+T
Sbjct: 18  LREDGRDVDELRVLKATKDFNLYAEGSVLMECGNTKVICTATVSDKVPPFLKNQGKGWLT 77

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+TG R +RE+  G+  GR+ EIQR+IGRALR+ VDL  LG R I IDCDVIQ
Sbjct: 78  AEYSMIPRATGERNQRESAKGKLTGRTMEIQRLIGRALRTAVDLEKLGERTITIDCDVIQ 137

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITG ++AL   ++ +   +        +  +VAAIS G++ G P++DL Y 
Sbjct: 138 ADGGTRTTSITGGYIALALAMKKL--VAEGVLAENPIISNVAAISVGIVNGTPVLDLKYT 195

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  +VD N VM   G  VEVQG+ E AT+++     ML+LA+  + ++++LQ  +I  
Sbjct: 196 EDSAAEVDMNVVMNGEGKFVEVQGTGEEATYTRKELNEMLDLAEKGLKEIMELQNRIIGE 255


>gi|220928777|ref|YP_002505686.1| ribonuclease PH [Clostridium cellulolyticum H10]
 gi|254808583|sp|B8I1A8|RNPH_CLOCE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|219999105|gb|ACL75706.1| ribonuclease PH [Clostridium cellulolyticum H10]
          Length = 240

 Score =  328 bits (843), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 108/238 (45%), Positives = 158/238 (66%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR   Q+R + + R   K+AEGS L++ GDT ++ TA++EE++P + +++  GW+T
Sbjct: 2   LRHDGRSNTQLRSVRILRNYIKHAEGSVLIEVGDTKVICTASVEERIPPFKKDSGEGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +R+    +  GRS EIQR+IGR+LR++VDL  LG R I IDCDVIQ
Sbjct: 62  AEYSMLPRATAVRNQRDISKLKLNGRSSEIQRLIGRSLRTIVDLKLLGERTITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG++VAL D  + +            + G VAA S G++ G  ++DL Y 
Sbjct: 122 ADGGTRTASITGSYVALVDACRTLVK--KGLISKMPVTGTVAATSVGIVNGEELLDLCYI 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  +VD N + TD G  +E+Q + E+++FS+     +LNLA+  I +LIK Q +V+
Sbjct: 180 EDSNAEVDMNVIKTDKGEFIEIQATGEKSSFSKKQLDQLLNLAESGIHELIKAQNEVL 237


>gi|261823588|ref|YP_003261694.1| ribonuclease PH [Pectobacterium wasabiae WPP163]
 gi|261607601|gb|ACX90087.1| ribonuclease PH [Pectobacterium wasabiae WPP163]
          Length = 238

 Score =  328 bits (843), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 118/240 (49%), Positives = 162/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++ TR  +K+AEGS LV+FGDT +L  AT+EE VP +++    GW+T
Sbjct: 1   MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ +DL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  M       +    +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNQMVAKGKLKK--NPMKGMVAAVSVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G +VEVQG+AE   FS +    +L LA+  I  +++ QK  +++
Sbjct: 179 EDSAAETDMNVVMTEDGRMVEVQGTAEGEPFSHEELLTLLALARGGIDTIVQAQKAALAD 238


>gi|315292912|gb|EFU52264.1| ribonuclease PH [Escherichia coli MS 153-1]
          Length = 214

 Score =  328 bits (843), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 119/216 (55%), Positives = 154/216 (71%), Gaps = 2/216 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D LQ + +  N    +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALQKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
           EDS  + D N VMT+ G I+EVQG+AE   F+ +  
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEEL 214


>gi|161551792|ref|YP_148519.2| ribonuclease PH [Geobacillus kaustophilus HTA426]
 gi|61215778|sp|Q5KWI5|RNPH_GEOKA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
          Length = 256

 Score =  328 bits (843), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 118/241 (48%), Positives = 154/241 (63%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR   ++R + +     K+AEGS L++ GDT ++ TAT+EEKVP ++R    GWIT
Sbjct: 1   MRADGRSSCELRPVHIHPHYMKHAEGSVLIEVGDTKVICTATVEEKVPSFMRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+  GR+ EIQR+IGRALRSVVDL  LG R I IDCDVIQ
Sbjct: 61  AEYGMLPRATEQRNVREASKGKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VAL   L  + +      L   ++  +AA S G+   +  I+DLDY
Sbjct: 121 ADGGTRTASITGAYVALVLALAKLVEEGRLEAL--PIRDFLAATSVGIDPEHGVILDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED+   VD N VMT +G  VE+QG+ E A FS+     +L  A+  I  LI +Q+  + 
Sbjct: 179 NEDARAKVDMNVVMTGAGQFVEIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQRRALG 238

Query: 240 N 240
            
Sbjct: 239 E 239


>gi|126172622|ref|YP_001048771.1| ribonuclease PH [Shewanella baltica OS155]
 gi|152998920|ref|YP_001364601.1| ribonuclease PH [Shewanella baltica OS185]
 gi|160873506|ref|YP_001552822.1| ribonuclease PH [Shewanella baltica OS195]
 gi|217971601|ref|YP_002356352.1| ribonuclease PH [Shewanella baltica OS223]
 gi|304411675|ref|ZP_07393287.1| ribonuclease PH [Shewanella baltica OS183]
 gi|307306273|ref|ZP_07586018.1| ribonuclease PH [Shewanella baltica BA175]
 gi|166228316|sp|A3CZI9|RNPH_SHEB5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228317|sp|A6WI99|RNPH_SHEB8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043774|sp|A9KXZ7|RNPH_SHEB9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808600|sp|B8E4I8|RNPH_SHEB2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|125995827|gb|ABN59902.1| RNAse PH [Shewanella baltica OS155]
 gi|151363538|gb|ABS06538.1| ribonuclease PH [Shewanella baltica OS185]
 gi|160859028|gb|ABX47562.1| ribonuclease PH [Shewanella baltica OS195]
 gi|217496736|gb|ACK44929.1| ribonuclease PH [Shewanella baltica OS223]
 gi|304349863|gb|EFM14269.1| ribonuclease PH [Shewanella baltica OS183]
 gi|306911146|gb|EFN41573.1| ribonuclease PH [Shewanella baltica BA175]
 gi|315265735|gb|ADT92588.1| ribonuclease PH [Shewanella baltica OS678]
          Length = 237

 Score =  328 bits (843), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q R I++TR+ + +AEGS LV+FG+T +L TA+  E VP +++    GW+T
Sbjct: 1   MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+Q GR+QEIQR+IGRALR+ VD+ ALG   I+IDCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L            S  LK  +AA+S G+  G  I DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALNWAR--GKGIIKSNPLKFLIAAVSVGIYKGEAISDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VMT++G I+E+QG+AE   FS +    +L LAK+ I +++ +QK  ++
Sbjct: 179 EDSAAETDMNVVMTETGKIIEIQGTAEGEPFSHEELLELLALAKNSIREIVDVQKAALN 237


>gi|118462847|ref|YP_880792.1| ribonuclease PH [Mycobacterium avium 104]
 gi|166228290|sp|A0QD04|RNPH_MYCA1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|118164134|gb|ABK65031.1| ribonuclease PH [Mycobacterium avium 104]
          Length = 259

 Score =  328 bits (843), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 106/238 (44%), Positives = 155/238 (65%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  +++  GS L++FG T ++ TA++ E VP W + +  GW+TA
Sbjct: 4   REDGRLDDELRPLVITRGFTEHPAGSVLIEFGHTKVMCTASVTEGVPRWRKGSGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V GR  GR+QEI R+IGR+LR+ +DL+ALG   I +DCDV+QA
Sbjct: 64  EYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAFVALADAVTYL-SAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D+  +VD N V TD+G +VEVQG+ E ATF +     +L+ A      L   Q++ + 
Sbjct: 183 DARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDAALAACDKLFAAQREALK 240


>gi|41408520|ref|NP_961356.1| ribonuclease PH [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|254774377|ref|ZP_05215893.1| ribonuclease PH [Mycobacterium avium subsp. avium ATCC 25291]
 gi|61215988|sp|Q73X87|RNPH_MYCPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|41396876|gb|AAS04739.1| RphA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 259

 Score =  328 bits (842), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 106/238 (44%), Positives = 155/238 (65%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  +++  GS L++FG T ++ TA++ E VP W + +  GW+TA
Sbjct: 4   REDGRLDDELRPLVITRGFTEHPAGSVLIEFGHTKVMCTASVTEGVPRWRKGSGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V GR  GR+QEI R+IGR+LR+ +DL+ALG   I +DCDV+QA
Sbjct: 64  EYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAFVALADAVTYL-SAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D+  +VD N V TD+G +VEVQG+ E ATF +     +L+ A      L   Q++ + 
Sbjct: 183 DARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDAALAACDKLFAAQREALK 240


>gi|15603741|ref|NP_246815.1| ribonuclease PH [Pasteurella multocida subsp. multocida str. Pm70]
 gi|21759412|sp|Q9CJW5|RNPH_PASMU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|12722306|gb|AAK03960.1| Rph [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 238

 Score =  328 bits (842), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  NQ R I +TR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GW+T
Sbjct: 1   MRPNERANNQPRPIKITRHYTKHAEGSVLVEFGDTKVLCTATVEESVPRFLKGQNQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA  G+QGGR+ EIQR+I R+LR++VDL ALG R I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERSITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  + +  N       +K  VAAIS G++ G P+ DL+Y 
Sbjct: 121 ADGGTRTASITGACVALCDAIHGLVE--NGTLKVNPIKSLVAAISVGIVEGVPVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +    +L LAK+    +  +Q+  ++ 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALAKEGCQLIFDVQRQALAK 238


>gi|56964417|ref|YP_176148.1| ribonuclease PH [Bacillus clausii KSM-K16]
 gi|61215808|sp|Q5WEM3|RNPH_BACSK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|56910660|dbj|BAD65187.1| ribonuclease PH [Bacillus clausii KSM-K16]
          Length = 250

 Score =  328 bits (842), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 116/241 (48%), Positives = 156/241 (64%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR++NQ+RE+ +    +K+AEGS L+  GDT ++ TA++E +VP ++R    GW+ 
Sbjct: 1   MRQDGRKQNQLREVEIIPHFTKHAEGSVLISVGDTKVICTASIENRVPPFLRGQNKGWLA 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+TG R  REA  G+  GR+ EIQR+IGRALR+VVDL  LG + I IDCDVIQ
Sbjct: 61  AEYSMLPRATGQRTIREAAKGKLSGRTMEIQRLIGRALRAVVDLEKLGEKTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VAL   +Q     + K   +  +   +AAIS G+L     + DL Y
Sbjct: 121 ADGGTRTASITGAYVALVLAVQK--AFAEKTISAWPITDFLAAISVGILPEEGAVCDLCY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N V T SG  VEVQGS E A +++     +L+LA + I  LI +Q+  + 
Sbjct: 179 SEDSQAKVDMNIVQTGSGDFVEVQGSGEEAVYTRSELNELLDLAAEGIDQLIHIQRPFLG 238

Query: 240 N 240
            
Sbjct: 239 E 239


>gi|262277778|ref|ZP_06055571.1| ribonuclease PH [alpha proteobacterium HIMB114]
 gi|262224881|gb|EEY75340.1| ribonuclease PH [alpha proteobacterium HIMB114]
          Length = 237

 Score =  328 bits (842), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 121/239 (50%), Positives = 170/239 (71%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R   ++R + +       A+GSCL+KFG+TH++ TA+ E+KVP W++ +  GW+T
Sbjct: 1   MR-NNRSNTELRPVEIIPNYINNADGSCLIKFGNTHVICTASYEDKVPRWLKGSGKGWVT 59

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R++REA +G+ GGR+ EIQR+IGR+LR+ +DLS LG   I IDCDVIQ
Sbjct: 60  AEYGMLPRSTNERMRREASAGKIGGRTSEIQRLIGRSLRASIDLSLLGENLITIDCDVIQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +VAL+ C++ ++D   K   +  +K HVAAISCG++ G  +VDLDY 
Sbjct: 120 ADGGTRTASITGGFVALNQCVKILQD--KKLINTNPIKNHVAAISCGVVNGETLVDLDYK 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  DVDANFV+ +   I+E+Q + E+ T S++    ML  +K  I  LI+ QK+ +S
Sbjct: 178 EDSGADVDANFVINEKNEIIELQLTGEQTTCSEEKLNEMLKYSKQSIQLLIQKQKEALS 236


>gi|116671127|ref|YP_832060.1| ribonuclease PH [Arthrobacter sp. FB24]
 gi|116611236|gb|ABK03960.1| RNAse PH [Arthrobacter sp. FB24]
          Length = 252

 Score =  328 bits (842), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 115/240 (47%), Positives = 162/240 (67%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q+R IS+TR  SK AEGS L++FG+T +L TA+L E VP W++    GW+T
Sbjct: 11  IRADGRTPDQLRPISITRGWSKQAEGSALIEFGNTRVLCTASLTEGVPRWLKGEGRGWVT 70

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LRS++D  ALG   I++DCDV+Q
Sbjct: 71  AEYAMLPRATNTRSARESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL + ++   +     + +Q L   +AA+S G++ G P++DL Y 
Sbjct: 131 ADGGTRTAAITGAYVALAEAIRFARENKIISKNAQPLIDTIAAVSVGIIDGVPMLDLPYV 190

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   + D N V+T SG  VEVQG+AE A F +D    +L+LA      L  +Q++ ++ 
Sbjct: 191 EDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNQLLDLALLGTEQLAAIQRETLAE 250


>gi|238755573|ref|ZP_04616910.1| Ribonuclease PH [Yersinia ruckeri ATCC 29473]
 gi|238706173|gb|EEP98553.1| Ribonuclease PH [Yersinia ruckeri ATCC 29473]
          Length = 238

 Score =  328 bits (842), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPAGRALEQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHSRNPREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +   +N    S  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNKL--VANGKLKSNPMKGLVAAVSVGIVKGKAMCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +   A+L LA+  I  + + Q+ V+  
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIESIFQAQRAVLEQ 238


>gi|84494376|ref|ZP_00993495.1| ribonuclease PH [Janibacter sp. HTCC2649]
 gi|84383869|gb|EAP99749.1| ribonuclease PH [Janibacter sp. HTCC2649]
          Length = 254

 Score =  328 bits (842), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 117/239 (48%), Positives = 154/239 (64%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR    +REI +TR    +AEGS L++FG T +L  A+  E VP W++    GW+T+
Sbjct: 7   RHDGRAPEDLREIRITRNWLDHAEGSVLIEFGRTRVLCAASFTEGVPRWLKGKGTGWVTS 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  RE+  G+ GGR+ EI R+IGRALR+V+D  ALG   I++DCDV+QA
Sbjct: 67  EYEMLPRSTNTRSDRESRKGKVGGRTHEISRLIGRALRAVIDTKALGENTIVVDCDVLQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D ++         + +Q L   +AA+S G++ G P++DLDY E
Sbjct: 127 DGGTRTASITGAYVALVDAIEDARAKGLIAKNAQPLLDSIAAVSVGVVGGLPVLDLDYPE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAER--ATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DST D D N VMT SG  VEVQG+AE   A F +D    +L+LA    A L   QK  +
Sbjct: 187 DSTADTDMNVVMTGSGRYVEVQGTAEGADAAFDRDRLNELLDLAAAGCATLTLEQKKSL 245


>gi|56381043|dbj|BAD76951.1| ribonuclease PH [Geobacillus kaustophilus HTA426]
          Length = 257

 Score =  328 bits (842), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 118/241 (48%), Positives = 154/241 (63%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR   ++R + +     K+AEGS L++ GDT ++ TAT+EEKVP ++R    GWIT
Sbjct: 2   MRADGRSSCELRPVHIHPHYMKHAEGSVLIEVGDTKVICTATVEEKVPSFMRGGGKGWIT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+  GR+ EIQR+IGRALRSVVDL  LG R I IDCDVIQ
Sbjct: 62  AEYGMLPRATEQRNVREASKGKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VAL   L  + +      L   ++  +AA S G+   +  I+DLDY
Sbjct: 122 ADGGTRTASITGAYVALVLALAKLVEEGRLEAL--PIRDFLAATSVGIDPEHGVILDLDY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED+   VD N VMT +G  VE+QG+ E A FS+     +L  A+  I  LI +Q+  + 
Sbjct: 180 NEDARAKVDMNVVMTGAGQFVEIQGTGEEAVFSRAELDELLEAAQIGIEQLIAVQRRALG 239

Query: 240 N 240
            
Sbjct: 240 E 240


>gi|197117592|ref|YP_002138019.1| ribonuclease PH [Geobacter bemidjiensis Bem]
 gi|197086952|gb|ACH38223.1| ribonuclease PH [Geobacter bemidjiensis Bem]
          Length = 239

 Score =  328 bits (842), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 121/238 (50%), Positives = 165/238 (69%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  N +RE+ +TR   K+AEGS LV+FGDT ++  AT+E +VP +++    GW+T
Sbjct: 2   IRREGRAANALREVKITRNYLKHAEGSVLVEFGDTKVICNATVEARVPSFLKGKGSGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R I+IDCDVIQ
Sbjct: 62  AEYCMLPRATHTRNQRESAKGKLSGRTHEIQRLIGRSLRAVVDLELLGERSIVIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D LQ++ +     +    L+  VAA+S G++ G P +DLDY 
Sbjct: 122 ADGGTRTASITGAYVALADALQNLVNAGELEK--SPLREAVAAVSVGIVDGVPFLDLDYP 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDST +VD NFVMT S   VEVQG+AE   F+ D   AM   A   ++ L ++Q++ +
Sbjct: 180 EDSTAEVDMNFVMTSSMRFVEVQGTAEAEPFTLDQMDAMRRHAMLGLSRLFEIQQEAL 237


>gi|50955004|ref|YP_062292.1| ribonuclease PH [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|61215900|sp|Q6AEK9|RNPH_LEIXX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|50951486|gb|AAT89187.1| ribonuclease PH [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 251

 Score =  328 bits (842), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 112/239 (46%), Positives = 155/239 (64%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q+R +++ R  ++ AEGS LV FG T +L TA+    VP W+     GW+T
Sbjct: 5   IRADGRTADQLRPVTIERAWNRKAEGSALVSFGGTRVLCTASFTNGVPRWMSGKGRGWVT 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST +R+ RE+V GR GGR+ EI R+IGR+LR+VVD+ ALG   I++DCDV+Q
Sbjct: 65  AEYAMLPRSTNDRMDRESVKGRIGGRTHEISRLIGRSLRAVVDMKALGENTIVLDCDVLQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D L+   +     Q +  L   V+A+S G++ G P++DL Y 
Sbjct: 125 ADGGTRTAAITGAYVALADALEWGREHRFIGQKAAPLLDSVSAVSVGIVDGSPMLDLAYT 184

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED   + D N V+T  G  VEVQG+AE A F +     +L+LA      L+ +Q   ++
Sbjct: 185 EDVRAETDMNVVVTGRGLFVEVQGTAEGAPFDRSELNGLLDLALAGTTALVAVQSAALA 243


>gi|227551340|ref|ZP_03981389.1| tRNA nucleotidyltransferase [Enterococcus faecium TX1330]
 gi|257887545|ref|ZP_05667198.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,141,733]
 gi|257896040|ref|ZP_05675693.1| ribonuclease PH/Ham1 [Enterococcus faecium Com12]
 gi|257898668|ref|ZP_05678321.1| ribonuclease PH/Ham1 [Enterococcus faecium Com15]
 gi|293378788|ref|ZP_06624945.1| tRNA nucleotidyltransferase [Enterococcus faecium PC4.1]
 gi|227179551|gb|EEI60523.1| tRNA nucleotidyltransferase [Enterococcus faecium TX1330]
 gi|257823599|gb|EEV50531.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,141,733]
 gi|257832605|gb|EEV59026.1| ribonuclease PH/Ham1 [Enterococcus faecium Com12]
 gi|257836580|gb|EEV61654.1| ribonuclease PH/Ham1 [Enterococcus faecium Com15]
 gi|292642581|gb|EFF60734.1| tRNA nucleotidyltransferase [Enterococcus faecium PC4.1]
          Length = 451

 Score =  328 bits (842), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 122/242 (50%), Positives = 163/242 (67%), Gaps = 3/242 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+  ++R++ L   V KY EGS +++FGDT ++ +AT+E+ VP ++R T  GW+T
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATVEDSVPPFLRETGTGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+IGR+LR+V+DL  LG R IIIDCDVIQ
Sbjct: 61  AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVIDLEKLGERSIIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   ++ +     K      +K H+AA+S G+L  G  + DLDY
Sbjct: 121 ADGGTRTASITGAFVALRLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N VMT+SG  VE+QG+ E ATF  +    ML   K+ I DLIK QK  + 
Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238

Query: 240 NE 241
            E
Sbjct: 239 TE 240


>gi|294085187|ref|YP_003551947.1| RNase PH [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664762|gb|ADE39863.1| RNase PH [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 245

 Score =  328 bits (841), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 128/240 (53%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  + +R I+L    S +AEGSCLV+ G+TH+L TA+++E+VP ++RN+  GW+TA
Sbjct: 3   RPSGRAYDALRSITLESGFSLHAEGSCLVRCGNTHVLCTASVDERVPSFLRNSGKGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+QGGR+ EIQR+IGR+LR+V DL ALG RQI IDCDVIQA
Sbjct: 63  EYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRSLRAVTDLKALGERQIKIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGAWVAL    + +          Q +  +VAAISCG+  G  ++DLDY E
Sbjct: 123 DGGTRTASITGAWVALKIACEKL--LLAGAITRQPIIDNVAAISCGVYKGNSVLDLDYDE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  ++DANFVM+  G +VE+Q + E   FS+D   AML+LA+   A L  LQ   +  +
Sbjct: 181 DSNAEIDANFVMSADGGLVEIQATGEEKPFSRDVLNAMLDLAEAGGATLFALQDQAVQTD 240


>gi|304413132|ref|ZP_07394605.1| ribonuclease PH [Candidatus Regiella insecticola LSR1]
 gi|304283975|gb|EFL92368.1| ribonuclease PH [Candidatus Regiella insecticola LSR1]
          Length = 242

 Score =  328 bits (841), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 160/239 (66%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MRL+GR   Q+R ++LTR  +KYAEGS LV+FGDT +L TAT+EE +P +++    GWIT
Sbjct: 1   MRLAGRAAEQVRPLTLTRHYTKYAEGSVLVEFGDTKVLCTATIEEGIPRFLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I IDCDV+Q
Sbjct: 61  AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLQQLGEHTITIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+GA VAL D L+       K      ++G VAAIS G++    + DL+Y 
Sbjct: 121 ADGGTRTAAISGASVALADALEK--AVIKKKLKKNPMRGLVAAISVGIVKNEALGDLEYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  + D N VM +   ++EVQG+AE   FS +    +L LA+  I  + + QK  ++
Sbjct: 179 EDANAETDMNVVMMEDYQMIEVQGTAEGKPFSHEQLLTLLALARGGIGTIFQAQKAALA 237


>gi|271963272|ref|YP_003337468.1| tRNA nucleotidyltransferase [Streptosporangium roseum DSM 43021]
 gi|270506447|gb|ACZ84725.1| tRNA nucleotidyltransferase [Streptosporangium roseum DSM 43021]
          Length = 238

 Score =  328 bits (841), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 111/238 (46%), Positives = 154/238 (64%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R +++TR    +AEGS LV+FG T +L  A++++ VP W R +  GW+TA
Sbjct: 3   RADGRSPDQLRPVTITRGWLAHAEGSVLVEFGGTKVLCAASVQDSVPRWRRGSGQGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LR+ VD   LG   I+IDCDV+QA
Sbjct: 63  EYAMLPRATNTRNDRESVRGKIGGRTHEISRLIGRSLRACVDYKTLGENSIVIDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  M +   K      L   V+A+S G++   P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWMRE--RKMCKGDPLIDSVSAVSVGVVGSTPLLDLCYTE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   + D N VMT SG  VEVQG+AE   F +     +L+L     A+L +LQ++ ++
Sbjct: 181 DVAAETDMNVVMTGSGAFVEVQGTAEGKPFDRGALDELLDLGVAGCAELTRLQRETLA 238


>gi|117928891|ref|YP_873442.1| ribonuclease PH [Acidothermus cellulolyticus 11B]
 gi|117649354|gb|ABK53456.1| RNAse PH [Acidothermus cellulolyticus 11B]
          Length = 240

 Score =  328 bits (841), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 110/240 (45%), Positives = 153/240 (63%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR  +++R +  TR    +AEGS LV+FG T +L  A++ E VP W + T  GW+T
Sbjct: 2   LRVDGRAADELRPVRFTRGWLLHAEGSVLVEFGRTRVLCAASVLEGVPKWRKGTGLGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            EY MLPR+T  R  RE+V GR GGR+QEI R++GR+LR+ V+ + LG   + +DCDV+Q
Sbjct: 62  GEYAMLPRATTTRTDRESVRGRLGGRTQEISRLVGRSLRACVEPARLGENTVHLDCDVLQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA++AL D  + M D  + +  S  L   VAA+S G++ G P++DL Y 
Sbjct: 122 ADGGTRTAAITGAYLALADACRWMRD--HGWVTSDPLVRSVAAVSVGIVDGVPVLDLCYD 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED     D N VMT  G  VE+QG+AE     +D   A+L LA    A L +LQ+  ++ 
Sbjct: 180 EDVRAGTDMNVVMTGDGDFVEIQGTAEGTPLRRDEVDALLELATRGCARLTELQRTALAE 239


>gi|50119101|ref|YP_048268.1| ribonuclease PH [Pectobacterium atrosepticum SCRI1043]
 gi|61215912|sp|Q6DAW2|RNPH_ERWCT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|49609627|emb|CAG73060.1| ribonuclease PH [Pectobacterium atrosepticum SCRI1043]
          Length = 238

 Score =  328 bits (841), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 119/240 (49%), Positives = 163/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++ TR  +K+AEGS LV+FGDT +L  AT+EE VP +++    GW+T
Sbjct: 1   MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ +DL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  M   +N       +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNQM--VANGKLKKNPMKGMVAAVSVGIVKGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G +VEVQG+AE   FS +    +L LA+  I  +++ QK  +++
Sbjct: 179 EDSAAETDMNVVMTEDGRMVEVQGTAEGEPFSHEELLTLLALARGGIDTIVQAQKAALAD 238


>gi|120405241|ref|YP_955070.1| ribonuclease PH [Mycobacterium vanbaalenii PYR-1]
 gi|166228297|sp|A1TD14|RNPH_MYCVP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|119958059|gb|ABM15064.1| RNAse PH [Mycobacterium vanbaalenii PYR-1]
          Length = 260

 Score =  328 bits (841), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 109/238 (45%), Positives = 157/238 (65%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R +++TR  + +  GS LV+FG T ++ TA++ E VP W + +  GW+TA
Sbjct: 4   REDGRLDDELRPVTITRGFTTHPAGSVLVEFGQTRVMCTASVTEGVPRWRKGSGQGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V GR GGR+QEI R++GR+LR+ +DL+ALG   I IDCDV+QA
Sbjct: 64  EYAMLPAATHERSGRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVTYL-AAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYTE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VE+QG+ E ATF +     ML+ A      L ++Q+  + 
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKMLDAAMAACDQLFEIQRAALE 240


>gi|313672547|ref|YP_004050658.1| rnase ph [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939303|gb|ADR18495.1| RNAse PH [Calditerrivibrio nitroreducens DSM 19672]
          Length = 238

 Score =  328 bits (841), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 103/239 (43%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR  +Q+R+I + +   +Y +GS L+++G+T ++  AT+ E VP +++ T  GW+T
Sbjct: 1   MRNDGRLNDQLRDIRVVKDYIRYPQGSVLIEYGETKVICNATISEGVPPFLKGTGTGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           +EY MLP ST  R +RE+  G+  GR+QEI R+IGR+LRS +DLS +G R I IDCDVIQ
Sbjct: 61  SEYSMLPCSTHTRNQRESQKGKLTGRTQEISRLIGRSLRSAIDLSLIGERTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG ++AL+   Q + +     ++   +K  VAA+S G++ G  ++DL+Y 
Sbjct: 121 ADGGTRTASITGGFLALYIACQKLSED---LKIGNPIKSFVAAVSLGIVNGEIMLDLNYE 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N +  +   I+E+QG++E+ TF +D    M++L  + I  LI +QK V++
Sbjct: 178 EDSNAEADINLIANEKSEIIEIQGTSEKGTFDKDMLNKMIDLGLNGINQLIDIQKRVLN 236


>gi|114566005|ref|YP_753159.1| tRNA nucleotidyltransferase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|122318883|sp|Q0AZR6|RNPH_SYNWW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|114336940|gb|ABI67788.1| RNAse PH [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 239

 Score =  328 bits (841), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 113/238 (47%), Positives = 158/238 (66%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R  +QMR + +     KY +GS L++ GDT ++ +A +EEKVP ++R    GW+TA
Sbjct: 3   RPQNRGNDQMRTVRIIPGFQKYPDGSVLIEAGDTRVMCSAMMEEKVPPFLRGKGSGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP ST  R +REA  G+  GR+ EIQR+IGR+LR+VVD+ A+G R + IDCDV+QA
Sbjct: 63  EYSLLPSSTETRTQREASKGKISGRTSEIQRLIGRSLRAVVDMPAMGERTLWIDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITG++VAL+   +  ++       +  +K  VAAIS G++ G PI+DL+Y E
Sbjct: 123 DGGTRTAAITGSFVALYLAFKKFKE--QGIIETIPVKDFVAAISVGIIDGTPILDLEYIE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  DVD N VMT +G  +E+QG+AE   FS+     +L LA   I +LI LQK ++ 
Sbjct: 181 DSQADVDMNVVMTGNGDFIEIQGTAEGTVFSRAELDQLLELAGKGIQELIALQKTILG 238


>gi|293572585|ref|ZP_06683559.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E980]
 gi|291607368|gb|EFF36716.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E980]
          Length = 451

 Score =  328 bits (841), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 122/242 (50%), Positives = 163/242 (67%), Gaps = 3/242 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+  ++R++ L   V KY EGS +++FGDT ++ +AT+E+ VP ++R T  GW+T
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATVEDSVPPFLRETGTGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+IGR+LR+V+DL  LG R IIIDCDVIQ
Sbjct: 61  AEYSMLPRATSTRNRRESNKGKLSGRTMEIQRLIGRSLRAVIDLEKLGERSIIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   ++ +     K      +K H+AA+S G+L  G  + DLDY
Sbjct: 121 ADGGTRTASITGAFVALRLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N VMT+SG  VE+QG+ E ATF  +    ML   K+ I DLIK QK  + 
Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238

Query: 240 NE 241
            E
Sbjct: 239 TE 240


>gi|293189253|ref|ZP_06607976.1| tRNA nucleotidyltransferase [Actinomyces odontolyticus F0309]
 gi|292821716|gb|EFF80652.1| tRNA nucleotidyltransferase [Actinomyces odontolyticus F0309]
          Length = 255

 Score =  327 bits (840), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 112/242 (46%), Positives = 159/242 (65%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q+R +S+TR  S   EGS L++FG+T +L  A+  E VP W R++  GW+T
Sbjct: 6   LRADGRTPSQLRPVSITRGWSGTGEGSILIEFGNTRVLCVASFTEGVPRWKRDSGEGWVT 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            EY MLPR+T  R  RE+V G+ GGR+QEI R+IGR+LR +VD+SALG   I++DCDV++
Sbjct: 66  GEYSMLPRATEQRSSRESVKGKVGGRTQEISRLIGRSLRGIVDVSALGENTIVLDCDVLR 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D +   ++       ++VL   ++AIS G++ G P++DL Y 
Sbjct: 126 ADGGTRTAAITGAYVALADAVSWAKEQGILKPSAKVLTDSISAISVGVIDGTPMLDLPYV 185

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   + D N V T  G  +EVQG+AE A F++D    +L+LA    A L + QK  +  
Sbjct: 186 EDVRAETDMNVVQTGDGRFIEVQGTAEHAPFNRDELNELLDLATLGNARLAEAQKLALEA 245

Query: 241 EV 242
            +
Sbjct: 246 PL 247


>gi|294637890|ref|ZP_06716159.1| tRNA nucleotidyltransferase [Edwardsiella tarda ATCC 23685]
 gi|291088916|gb|EFE21477.1| tRNA nucleotidyltransferase [Edwardsiella tarda ATCC 23685]
          Length = 237

 Score =  327 bits (840), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR   Q+R + LTR  +K+AEGS LV+FGDT +L TA+++E VP +++    GW+T
Sbjct: 1   MRPEGRAAGQIRPLRLTRHYTKHAEGSVLVEFGDTKVLCTASVDEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMAREAAKGKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +         +  LKG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNALVASGKL--KASPLKGMVAAVSVGIVAGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G ++EVQG+AE   FS +    +L LAKD I  +I+ QK  ++
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALAKDGIGQIIQAQKAALA 237


>gi|311106536|ref|YP_003979389.1| ribonuclease PH [Achromobacter xylosoxidans A8]
 gi|310761225|gb|ADP16674.1| ribonuclease PH [Achromobacter xylosoxidans A8]
          Length = 244

 Score =  327 bits (840), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 117/237 (49%), Positives = 161/237 (67%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +++R  SL R  ++YAEGS LVK G+TH+L TA++ EKVP +++    GW+TA
Sbjct: 9   RPSGRAVDELRPFSLERGFTRYAEGSVLVKAGNTHVLCTASVLEKVPPFLKGKGEGWVTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V D+ ALG R + +DCDV+QA
Sbjct: 69  EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMKALGERTLHLDCDVLQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+ITGAWVA  + +  +    +       ++  VAA+S G++ G  ++DLDY E
Sbjct: 129 DGGTRCASITGAWVAASEAIALLMKRGDLAV--NPIRDAVAAVSVGLVQGRAVLDLDYEE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N +MT  G  VEVQG+ E ATF++     ML LA+  IA L++ Q+  +
Sbjct: 187 DSACDADVNVIMTGGGAFVEVQGTGEGATFTRAELDTMLVLAEGGIAGLVREQRAAL 243


>gi|307546985|ref|YP_003899464.1| ribonuclease PH [Halomonas elongata DSM 2581]
 gi|307219009|emb|CBV44279.1| ribonuclease PH [Halomonas elongata DSM 2581]
          Length = 245

 Score =  327 bits (840), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 117/238 (49%), Positives = 161/238 (67%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q R+I LTR  +++AEGS LV+FGDT +L  A++E  VP W+R  K GW+TA
Sbjct: 7   RPSGRATDQTRDIRLTRDYTRHAEGSVLVEFGDTRVLCNASVEAGVPRWLRGKKQGWVTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+QGGR+ EIQR+IGR+LR+ ++L  LG   I +DCDVIQA
Sbjct: 67  EYGMLPRATHTRGGREASRGKQGGRTVEIQRLIGRSLRASINLKKLGEFTITVDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITG  VAL D +++++    K          ++++S G+  G P+VDLDY E
Sbjct: 127 DGGTRTAAITGGCVALVDAVRYLQR--EKLIKGDPFHQLISSVSVGIYQGTPVVDLDYPE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS    D N VM ++G ++EVQG+AE  T+S+    AML+LA+    +L   Q++ + 
Sbjct: 185 DSRAGTDMNVVMAENGELIEVQGTAESGTYSRAELNAMLDLAEKAGGELFDHQREALG 242


>gi|284799568|ref|ZP_05984302.2| tRNA nucleotidyltransferase [Neisseria subflava NJ9703]
 gi|284797404|gb|EFC52751.1| tRNA nucleotidyltransferase [Neisseria subflava NJ9703]
          Length = 277

 Score =  327 bits (840), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 116/234 (49%), Positives = 168/234 (71%), Gaps = 2/234 (0%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
           GR  + +R+I +T     +A+GSCL++ G+T ++ TA+++E VP ++R  + GW+TAEYG
Sbjct: 43  GRAADSLRDIKITPNFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKEQGWVTAEYG 102

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           MLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADGG
Sbjct: 103 MLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG 162

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
           TRTA+ITGA+VAL   +  +   SN       ++  VAA+S G++ G P++DLDY EDS 
Sbjct: 163 TRTASITGAYVALQIAVDKL--LSNGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDSG 220

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            D D N +MT SG I+E+QG+AE A FS +    ++ LA   IA+L++ Q+  +
Sbjct: 221 CDSDVNIIMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQQAAL 274


>gi|296170279|ref|ZP_06851870.1| tRNA nucleotidyltransferase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895002|gb|EFG74721.1| tRNA nucleotidyltransferase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 259

 Score =  327 bits (840), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 105/238 (44%), Positives = 156/238 (65%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  + +  GS L++FG T ++ TA++ + VP W + +  GW+TA
Sbjct: 4   REDGRLDDELRPVVITRGFTDHPAGSVLIEFGHTKVMCTASVTDGVPRWRKGSGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V GR  GR+QEI R+IGR+LR+ +DL+ALG   I +DCDV+QA
Sbjct: 64  EYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAFVALADAVTYL-AAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D+  +VD N V TD+G +VEVQG+ E ATF +     +L++A      L   Q++ ++
Sbjct: 183 DARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDVALAACDKLFAAQREALA 240


>gi|293554040|ref|ZP_06674640.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1039]
 gi|291601822|gb|EFF32074.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1039]
          Length = 451

 Score =  327 bits (840), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 122/242 (50%), Positives = 163/242 (67%), Gaps = 3/242 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+  ++R++ L   V KY EGS +++FGDT ++ +AT+E+ VP ++R T  GW+T
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R II+DCDVIQ
Sbjct: 61  AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   ++ +     K      +K H+AA+S G+L  G  + DLDY
Sbjct: 121 ADGGTRTASITGAFVALKLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N VMT+SG  VE+QG+ E ATF  +    ML   K+ I DLIK QK  + 
Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238

Query: 240 NE 241
            E
Sbjct: 239 TE 240


>gi|238760457|ref|ZP_04621595.1| Ribonuclease PH [Yersinia aldovae ATCC 35236]
 gi|238783915|ref|ZP_04627932.1| Ribonuclease PH [Yersinia bercovieri ATCC 43970]
 gi|238701352|gb|EEP93931.1| Ribonuclease PH [Yersinia aldovae ATCC 35236]
 gi|238715154|gb|EEQ07149.1| Ribonuclease PH [Yersinia bercovieri ATCC 43970]
          Length = 238

 Score =  327 bits (840), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 119/240 (49%), Positives = 161/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +         +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNKLVASGKL--KANPMKGLVAAVSVGIVKGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +   A+L LA+  I  + + QK  ++ 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIETIFQAQKAALAQ 238


>gi|229062175|ref|ZP_04199499.1| Ribonuclease PH [Bacillus cereus AH603]
 gi|228717158|gb|EEL68834.1| Ribonuclease PH [Bacillus cereus AH603]
          Length = 259

 Score =  327 bits (840), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 110/243 (45%), Positives = 159/243 (65%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR + ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 15  MRVDGRGKAELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 74

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 75  AEYSMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 134

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS-CGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S   +     ++DL+Y
Sbjct: 135 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGVVEEQGVVLDLNY 192

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  L++ QK+ + 
Sbjct: 193 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAELNELLDAAEQGIFQLVEKQKEALG 252

Query: 240 NEV 242
           + V
Sbjct: 253 DIV 255


>gi|255066782|ref|ZP_05318637.1| tRNA nucleotidyltransferase [Neisseria sicca ATCC 29256]
 gi|255048857|gb|EET44321.1| tRNA nucleotidyltransferase [Neisseria sicca ATCC 29256]
          Length = 241

 Score =  327 bits (840), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 168/235 (71%), Gaps = 2/235 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  + +R+I +T     +A+GSCL++ G+T ++ TA+++E VP ++R    GW+TAEYGM
Sbjct: 9   RAADSLRDIKITPHFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKGQGWVTAEYGM 68

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST +R++REA +G+Q GR+QEIQR+IGR+LR++VD+  LG RQI+IDCDVIQADGGT
Sbjct: 69  LPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAIVDMEKLGERQILIDCDVIQADGGT 128

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTA+ITGA+VAL   +  +   S+       ++  VAA+S G++ G P++DLDY EDS  
Sbjct: 129 RTASITGAFVALQIAVNKL--LSDDLISENPIREAVAAVSAGVVNGVPLLDLDYPEDSGC 186

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D D N VMT SG I+E+QG+AE A FS D F  ++ LA+  IA+L   Q+  +S+
Sbjct: 187 DSDVNIVMTASGKIIEIQGTAEGAPFSLDEFGKLIALAQKGIAELTAHQQAALSS 241


>gi|220913058|ref|YP_002488367.1| ribonuclease PH [Arthrobacter chlorophenolicus A6]
 gi|219859936|gb|ACL40278.1| ribonuclease PH [Arthrobacter chlorophenolicus A6]
          Length = 252

 Score =  327 bits (840), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 115/242 (47%), Positives = 162/242 (66%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q+R IS+TR  S  AEGS L++FG+T +L TA+L   VP W++    GW+T
Sbjct: 11  VRADGRAPDQLRPISITRGWSNQAEGSALIEFGNTRVLCTASLTAGVPRWLKGEGRGWVT 70

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LRS++D  ALG   I++DCDV+Q
Sbjct: 71  AEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D ++   D     + +Q L   +AA+S G++ G P++DL Y 
Sbjct: 131 ADGGTRTAAITGAYVALADAIRFARDNKLIARNAQPLTDTIAAVSVGIIDGVPMLDLPYV 190

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   + D N V+T SG  VEVQG+AE A F +D    +L+LA      L  +Q++ +++
Sbjct: 191 EDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNQLLDLALLGTTQLAAIQRETLAD 250

Query: 241 EV 242
            +
Sbjct: 251 TL 252


>gi|291456091|ref|ZP_06595481.1| tRNA nucleotidyltransferase [Bifidobacterium breve DSM 20213]
 gi|291382500|gb|EFE90018.1| tRNA nucleotidyltransferase [Bifidobacterium breve DSM 20213]
          Length = 258

 Score =  327 bits (839), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 103/229 (44%), Positives = 151/229 (65%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R + +TR  +   EGS L++ G+T ++ TAT    VP W +++  GW+T
Sbjct: 18  IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWRKDSGLGWVT 77

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR V+D+ ALG  QI +DCDV+Q
Sbjct: 78  AEYAMLPRATSERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQ 137

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA+VAL D +   E   +     +VLK +V+A+S G++ G P++DL Y 
Sbjct: 138 ADGGTRTASVTGAYVALVDAVNWAEKHHHIKSADKVLKDYVSAVSVGVINGTPMLDLPYI 197

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
           EDS    D N  MT SG  +E+QG+AE   F++     +L+LA+    +
Sbjct: 198 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKE 246


>gi|312880664|ref|ZP_07740464.1| RNAse PH [Aminomonas paucivorans DSM 12260]
 gi|310783955|gb|EFQ24353.1| RNAse PH [Aminomonas paucivorans DSM 12260]
          Length = 248

 Score =  327 bits (839), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 120/237 (50%), Positives = 163/237 (68%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  + +R + L R  ++YAEGS  + FG T +L TAT+E+KVP ++R +  GW++A
Sbjct: 3   RIDGRSFDALRPLELERGCNRYAEGSARIAFGHTQVLCTATVEDKVPPFLRGSGKGWVSA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  R++  GR   R QEIQR+IGR+LR+ VDL ALG R + IDCDVIQA
Sbjct: 63  EYAMLPRATHQRTPRDSTRGRPNARGQEIQRLIGRSLRAAVDLEALGERTVWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D L+ + D +     S  L+  VAA+S G+L G P++DL Y E
Sbjct: 123 DGGTRTASITGAFVALVDALRWIRDRNGL--PSLPLRHQVAAVSVGLLGGCPLLDLCYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  +VD N VM + G  VE+QG+ E A FS+  F A+L+LA+  IA L +LQ+  +
Sbjct: 181 DSGAEVDCNVVMAEDGRFVEIQGTGEDALFSRASFDALLDLARQGIAALHRLQRSTL 237


>gi|311743617|ref|ZP_07717423.1| tRNA nucleotidyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311312747|gb|EFQ82658.1| tRNA nucleotidyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 240

 Score =  327 bits (839), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 115/238 (48%), Positives = 154/238 (64%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R+I +TR    +A+GSCL++FG T +L  A   E VP W + +  GW+TA
Sbjct: 4   REDGRAVDQLRDIRITRGWLDHAQGSCLIEFGKTRVLCAAAASEGVPRWRKGSGLGWVTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP++T +R  RE+V GR GGR+ EI R++GR+LR+ +D  ALG   I IDCDV+QA
Sbjct: 64  EYAMLPQATHDRSSRESVKGRIGGRTHEISRLVGRSLRATIDDKALGENTITIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA++AL D + H++         + L   VAAIS G++ G P++DL Y E
Sbjct: 124 DGGTRTAAITGAYIALADAVAHLKGLG--ATAGEPLVESVAAISVGIVDGVPMLDLPYVE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D     D N VMT SG  VEVQG+AE   F +    A+L LA    ADL +LQ + +S
Sbjct: 182 DVRAHTDMNVVMTGSGAFVEVQGTAEGQPFDKAELDALLELAAGGCADLTRLQTEALS 239


>gi|67458795|ref|YP_246419.1| ribonuclease PH [Rickettsia felis URRWXCal2]
 gi|75535816|sp|Q4UJN4|RNPH_RICFE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|67004328|gb|AAY61254.1| Ribonuclease PH [Rickettsia felis URRWXCal2]
          Length = 239

 Score =  327 bits (839), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 131/238 (55%), Positives = 169/238 (71%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ NQ+R ISL       AEGSCL+K G+TH++ +AT E  VP ++R    GW+T
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST  R+KREA  G+QGGR+QEIQR+IGR +R V+DL  LG RQIIIDCDVI 
Sbjct: 61  AEYGMLPGSTSQRIKREAAQGKQGGRTQEIQRLIGRNMRCVIDLKKLGERQIIIDCDVIN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VALH  ++ +     +      L   +AA+SCG+  G  I+DLDY 
Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSLMK--KRILKVNPLISQIAAVSCGIYKGEAILDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  +VD+NFV   +G+++EVQG+AE+  FS++ F AML LAK   A+L KLQ  V+
Sbjct: 179 EDSDAEVDSNFVFAGNGNLIEVQGTAEKEPFSEEQFIAMLKLAKGGAAELFKLQNQVL 236


>gi|33151538|ref|NP_872891.1| ribonuclease PH [Haemophilus ducreyi 35000HP]
 gi|61216021|sp|Q7VP10|RNPH_HAEDU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|33147758|gb|AAP95280.1| ribonuclease PH [Haemophilus ducreyi 35000HP]
          Length = 238

 Score =  327 bits (839), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 119/240 (49%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ NQ+R + +TR  ++YAEGS L++FG+T +L  A++EE VP +++  + GW+T
Sbjct: 1   MRPNHRENNQIRPVKITRHYTRYAEGSVLIEFGETKVLCNASIEESVPRFLKGQQQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+Q GR+ EIQR+I RALR+VVDL ALG R I IDCDVIQ
Sbjct: 61  AEYGMLPRATHSRNQREAAKGKQSGRTMEIQRLIARALRAVVDLEALGERTITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D +  +   ++    +  LKG VAAIS G++    + DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALQDAIHKL--IADGVLKTNPLKGLVAAISVGIVENEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED+  + D N VM + G +VEVQG+AE   FS      +L+LA   I  L ++Q+  ++ 
Sbjct: 179 EDAKAETDMNVVMVEDGRLVEVQGTAEGKPFSHMELLQLLDLADQGINQLFEVQRQALAE 238


>gi|331695372|ref|YP_004331611.1| Ribonuclease PH [Pseudonocardia dioxanivorans CB1190]
 gi|326950061|gb|AEA23758.1| Ribonuclease PH [Pseudonocardia dioxanivorans CB1190]
          Length = 251

 Score =  327 bits (839), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 115/238 (48%), Positives = 158/238 (66%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR   K+  GS LV+FGDT +L  A++ + VP W + +  GW+TA
Sbjct: 3   RADGRADDELRPVRITRGFQKHPAGSVLVEFGDTKVLCAASVTDGVPRWRKGSGLGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V GR GGR+ EI R+IGR+LR+ +DL ALG   I +DCDVIQA
Sbjct: 63  EYAMLPSATNTRSDRESVRGRIGGRTHEISRLIGRSLRACIDLKALGENTIALDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +    N+    + +   VAA+S G++ G   +DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVTWL-AAHNRLADPKPISCQVAAVSVGVVDGRVRLDLPYEE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G ++EVQG+AE ATFS+    AML+ A   IA L  LQ + ++
Sbjct: 182 DSRAEVDTNVVATDTGTLIEVQGTAEGATFSRRTLDAMLDSALAGIATLATLQAEALA 239


>gi|269123373|ref|YP_003305950.1| ribonuclease PH [Streptobacillus moniliformis DSM 12112]
 gi|268314699|gb|ACZ01073.1| ribonuclease PH [Streptobacillus moniliformis DSM 12112]
          Length = 231

 Score =  327 bits (839), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 106/233 (45%), Positives = 149/233 (63%), Gaps = 2/233 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ N++REI +TR   KY EGS L++FG+T ++   T+EEKVP +++N   GW+T
Sbjct: 1   MRTNNRKNNELREIKITREYIKYPEGSVLIEFGNTKVICNVTVEEKVPPFLKNLGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R KREA  G+  GR+ EIQR+IGR+LR+ +DL  LG R +I+DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNKREASQGKLSGRTMEIQRLIGRSLRAALDLKKLGERTLIVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG ++A+   +  +    +       ++  VAAIS G +     +DL++ 
Sbjct: 121 ADGGTRTASITGGYLAMEIAINKL--ILSGLLNENPIRAKVAAISVGKVNNELFLDLEFY 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           EDS  DVD N VM   G  +E+QG+ E  TF++      + LA      L KL
Sbjct: 179 EDSHADVDMNIVMNSKGEFIEIQGTGEDTTFTKQELDKFIELASLGFEKLFKL 231


>gi|257878167|ref|ZP_05657820.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,230,933]
 gi|257881049|ref|ZP_05660702.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,502]
 gi|257889634|ref|ZP_05669287.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,410]
 gi|257892426|ref|ZP_05672079.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,408]
 gi|260559214|ref|ZP_05831400.1| ribonuclease PH/Ham1 protein [Enterococcus faecium C68]
 gi|261207747|ref|ZP_05922432.1| ribonuclease PH/Ham1 protein [Enterococcus faecium TC 6]
 gi|289565822|ref|ZP_06446264.1| ribonuclease PH [Enterococcus faecium D344SRF]
 gi|293563126|ref|ZP_06677591.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1162]
 gi|294614004|ref|ZP_06693934.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1636]
 gi|294617101|ref|ZP_06696767.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1679]
 gi|294623312|ref|ZP_06702174.1| ribonuclease PH/Ham1 protein [Enterococcus faecium U0317]
 gi|314939893|ref|ZP_07847099.1| ribonuclease PH [Enterococcus faecium TX0133a04]
 gi|314943740|ref|ZP_07850479.1| ribonuclease PH [Enterococcus faecium TX0133C]
 gi|314949696|ref|ZP_07853014.1| ribonuclease PH [Enterococcus faecium TX0082]
 gi|314953242|ref|ZP_07856181.1| ribonuclease PH [Enterococcus faecium TX0133A]
 gi|314993678|ref|ZP_07859026.1| ribonuclease PH [Enterococcus faecium TX0133B]
 gi|314997405|ref|ZP_07862356.1| ribonuclease PH [Enterococcus faecium TX0133a01]
 gi|257812395|gb|EEV41153.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,230,933]
 gi|257816707|gb|EEV44035.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,502]
 gi|257825994|gb|EEV52620.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,410]
 gi|257828805|gb|EEV55412.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,408]
 gi|260074971|gb|EEW63287.1| ribonuclease PH/Ham1 protein [Enterococcus faecium C68]
 gi|260078130|gb|EEW65836.1| ribonuclease PH/Ham1 protein [Enterococcus faecium TC 6]
 gi|289162365|gb|EFD10223.1| ribonuclease PH [Enterococcus faecium D344SRF]
 gi|291593111|gb|EFF24690.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1636]
 gi|291596638|gb|EFF27865.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1679]
 gi|291597280|gb|EFF28469.1| ribonuclease PH/Ham1 protein [Enterococcus faecium U0317]
 gi|291604904|gb|EFF34373.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1162]
 gi|313588540|gb|EFR67385.1| ribonuclease PH [Enterococcus faecium TX0133a01]
 gi|313591852|gb|EFR70697.1| ribonuclease PH [Enterococcus faecium TX0133B]
 gi|313594708|gb|EFR73553.1| ribonuclease PH [Enterococcus faecium TX0133A]
 gi|313597603|gb|EFR76448.1| ribonuclease PH [Enterococcus faecium TX0133C]
 gi|313640856|gb|EFS05436.1| ribonuclease PH [Enterococcus faecium TX0133a04]
 gi|313643954|gb|EFS08534.1| ribonuclease PH [Enterococcus faecium TX0082]
          Length = 451

 Score =  327 bits (839), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 122/242 (50%), Positives = 162/242 (66%), Gaps = 3/242 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+  ++R++ L   V KY EGS +++FGDT ++ +AT+E  VP ++R T  GW+T
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIENSVPPFLRETGTGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R II+DCDVIQ
Sbjct: 61  AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   ++ +     K      +K H+AA+S G+L  G  + DLDY
Sbjct: 121 ADGGTRTASITGAFVALKLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N VMT+SG  VE+QG+ E ATF  +    ML   K+ I DLIK QK  + 
Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238

Query: 240 NE 241
            E
Sbjct: 239 TE 240


>gi|94968644|ref|YP_590692.1| ribonuclease PH [Candidatus Koribacter versatilis Ellin345]
 gi|94550694|gb|ABF40618.1| RNAse PH [Candidatus Koribacter versatilis Ellin345]
          Length = 245

 Score =  327 bits (839), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 111/242 (45%), Positives = 156/242 (64%), Gaps = 2/242 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R   R  +Q+R +S+       AEGSCL++ G+T ++ TA++EE VP ++RN+  GW+T
Sbjct: 3   FRSDNRTPDQLRPVSIIPDYISTAEGSCLIEVGNTRVICTASIEESVPSFLRNSGKGWLT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           +EY MLPR+T  R  RE   GR  GR+ EIQR+IGR+LR+V DL+ LG R + +DCDVIQ
Sbjct: 63  SEYAMLPRATLTRTPREVSKGRASGRTHEIQRLIGRSLRAVTDLTKLGERTLFVDCDVIQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA+   +Q + +          L+ +VAA S G++ G  ++DL Y 
Sbjct: 123 ADGGTRTASITGAFVAVGLAVQKLTEAGTLSI--SPLRDYVAATSVGIVDGAVLLDLAYE 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  +VD N VMT S  +VE+QG+AE+  F  +    M++LAK  I  LI  QK  +  
Sbjct: 181 EDSRAEVDMNIVMTGSRKMVEIQGTAEQHPFDDEQLAKMMSLAKAGIEQLIVKQKAALGT 240

Query: 241 EV 242
            V
Sbjct: 241 TV 242


>gi|119962182|ref|YP_948291.1| ribonuclease PH [Arthrobacter aurescens TC1]
 gi|119949041|gb|ABM07952.1| ribonuclease PH [Arthrobacter aurescens TC1]
          Length = 252

 Score =  327 bits (839), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 115/240 (47%), Positives = 163/240 (67%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q+R IS+TR  SK AEGS L++FG+T +L TA+L E VP W++    GW+T
Sbjct: 11  IRADGRTPDQLRPISITRGWSKQAEGSALIEFGNTRVLCTASLTEGVPRWLKGEGRGWVT 70

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LRS++D  ALG   I++DCDV+Q
Sbjct: 71  AEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL + ++   +     + ++ L   +AA+S G++ G P++DL Y 
Sbjct: 131 ADGGTRTAAITGAYVALAEAIRFARENKLIARNAEPLVDTIAAVSVGIIDGVPMLDLPYV 190

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   + D N V+T SG  VEVQG+AE A F +D   A+L+LA      L  +Q++ ++ 
Sbjct: 191 EDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNALLDLALLGTTQLSAIQRETLAE 250


>gi|238797068|ref|ZP_04640571.1| Ribonuclease PH [Yersinia mollaretii ATCC 43969]
 gi|238719113|gb|EEQ10926.1| Ribonuclease PH [Yersinia mollaretii ATCC 43969]
          Length = 238

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 119/240 (49%), Positives = 161/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +         +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNKLVASGKL--KANPMKGLVAAVSVGIVKGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +   A+L LA+  I  + + QK  ++ 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIETIFQAQKAALAE 238


>gi|37928170|pdb|1UDQ|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
           T125a Mutant From Aquifex Aeolicus
          Length = 255

 Score =  327 bits (838), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 114/236 (48%), Positives = 156/236 (66%), Gaps = 2/236 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+E+Q+R +S+ R   +Y EGSCL+ FG T ++ TA++ E VP W++    GWIT
Sbjct: 1   MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V GR GGR+ EIQRMIGRA+R+ V+L+ +G R I +DCDVIQ
Sbjct: 61  AEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGG RTAAITGA+VA+ D +  +            +K  VAA+S G++    ++DL++ 
Sbjct: 121 ADGGARTAAITGAFVAVADAIIKLHK--EGIIEETPIKDFVAAVSVGIVNDRILLDLNFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           EDS   VD N V T SG + EV    E  +F++D    ML+LA+  I +LI+LQK 
Sbjct: 179 EDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKK 234


>gi|69246345|ref|ZP_00603901.1| Ribonuclease PH:Ham1-like protein [Enterococcus faecium DO]
 gi|68195298|gb|EAN09749.1| Ribonuclease PH:Ham1-like protein [Enterococcus faecium DO]
          Length = 451

 Score =  327 bits (838), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 122/242 (50%), Positives = 163/242 (67%), Gaps = 3/242 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+  ++R++ L   V KY EGS +++FGDT ++ +AT+E+ VP ++R T  GW+T
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R II+DCDVIQ
Sbjct: 61  AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   ++ +     K      +K H+AA+S G+L  G  + DLDY
Sbjct: 121 ADGGTRTASITGAFVALKLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N VMT+SG  VE+QG+ E ATF  +    ML   K+ I DLIK QK  + 
Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238

Query: 240 NE 241
            E
Sbjct: 239 TE 240


>gi|284008817|emb|CBA75581.1| ribonuclease PH [Arsenophonus nasoniae]
          Length = 237

 Score =  327 bits (838), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 162/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R+ +Q+R I +TR+ +K+AEGS L++FGDT +L  AT++E VP +++    GWIT
Sbjct: 1   MRPENREADQVRPIKITRQYTKHAEGSVLIEFGDTKVLCNATIDEGVPRFLKGQSQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+Q GR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATNSRNIREAAKGKQTGRTMEIQRLIARSLRAAVDLKQLGEYTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+GA VAL D L  M       Q    LK  VAA+S G++ G PI DL+Y 
Sbjct: 121 ADGGTRTAAISGACVALTDALNKMVAEGKLKQ--SPLKSMVAAVSVGIVDGKPICDLEYS 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM D+G ++E+QG+AE   FS +   ++L+LAK+ +  +   QK+ + 
Sbjct: 179 EDSVAETDMNVVMMDNGKMIEIQGTAEGEPFSHEELLSLLSLAKNGLQTIFTAQKEALE 237


>gi|42524118|ref|NP_969498.1| ribonuclease PH [Bdellovibrio bacteriovorus HD100]
 gi|61215946|sp|Q6MJR9|RNPH_BDEBA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|39576326|emb|CAE80491.1| ribonuclease PH [Bdellovibrio bacteriovorus HD100]
          Length = 243

 Score =  327 bits (838), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 121/240 (50%), Positives = 159/240 (66%), Gaps = 4/240 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR  +Q+R I +T  VS+YAEGS +V+FG T +L TAT E K P W+  T  GWIT
Sbjct: 1   MRADGRLFDQLRNIKITPNVSEYAEGSAIVEFGRTKVLCTATYESKAPSWLLGTGAGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R++R+      GGR+QEI R+IGR+LR+ VDL  LG +QIIIDCDV+ 
Sbjct: 61  AEYGMLPRSTHTRIRRD--KSMTGGRTQEISRLIGRSLRAAVDLKQLGEKQIIIDCDVLN 118

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TG +VAL   L+ +   S     +  L  +V+AIS G+  G  ++DL+Y 
Sbjct: 119 ADGGTRTASVTGGFVALALALKKLHAVSEI--KTLPLINYVSAISVGLHEGQILLDLNYD 176

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS I  D NFVMTD G  VEVQG+AE   F++D  F M+++A+    +L   Q  V+  
Sbjct: 177 EDSAIGTDMNFVMTDKGQFVEVQGTAEHVPFTRDQLFKMMDVAEKGCRELFIHQASVMGE 236


>gi|224499091|ref|ZP_03667440.1| ribonuclease PH [Listeria monocytogenes Finland 1988]
          Length = 248

 Score =  327 bits (838), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 163/243 (67%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ N +R I +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 1   MRVDGRESNALRNIEITPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADGGTRTA+ITGA++A+   +  +++     +    +K  +AA S G+L  G  ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVPFAKF--PVKDFLAATSVGVLDEGGTVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N +MT SG  VE+QG+ E ATFS+     ++ L K  I++LI++QK+ + 
Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLG 238

Query: 240 NEV 242
           ++V
Sbjct: 239 DKV 241


>gi|227328057|ref|ZP_03832081.1| ribonuclease PH [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 238

 Score =  327 bits (838), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 117/238 (49%), Positives = 160/238 (67%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++ TR  +K+AEGS LV+FGDT +L  AT+EE VP +++    GW+T
Sbjct: 1   MRPTGRSAQQVRPLTFTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ +DL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  M       +    +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNQMVAKGKLKK--NPMKGMVAAVSVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VMT+ G ++EVQG+AE   FS +    +L LA+  I  +++ QK  +
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLTLLALARGGIDTIVQAQKAAL 236


>gi|253690467|ref|YP_003019657.1| ribonuclease PH [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|259494124|sp|C6DIC7|RNPH_PECCP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|251757045|gb|ACT15121.1| ribonuclease PH [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 238

 Score =  327 bits (838), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 119/238 (50%), Positives = 162/238 (68%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R + LTR  +K+AEGS LV+FGDT +L  AT+EE VP +++    GW+T
Sbjct: 1   MRPTGRSAQQVRPLKLTRHYTKHAEGSVLVEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ +DL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAIDLKVLGEYTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  M   +N       +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNQM--VANGKLKKNPMKGMVAAVSVGIVNGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  + D N VMT+ G ++EVQG+AE   FS +   ++L LA+  I  +++ QK  +
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEELLSLLALARGGIETIVQAQKAAL 236


>gi|163942228|ref|YP_001647112.1| ribonuclease PH [Bacillus weihenstephanensis KBAB4]
 gi|229013696|ref|ZP_04170825.1| Ribonuclease PH [Bacillus mycoides DSM 2048]
 gi|229135326|ref|ZP_04264120.1| Ribonuclease PH [Bacillus cereus BDRD-ST196]
 gi|229169222|ref|ZP_04296936.1| Ribonuclease PH [Bacillus cereus AH621]
 gi|226736888|sp|A9VIV4|RNPH_BACWK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|163864425|gb|ABY45484.1| ribonuclease PH [Bacillus weihenstephanensis KBAB4]
 gi|228614288|gb|EEK71399.1| Ribonuclease PH [Bacillus cereus AH621]
 gi|228648149|gb|EEL04190.1| Ribonuclease PH [Bacillus cereus BDRD-ST196]
 gi|228747618|gb|EEL97492.1| Ribonuclease PH [Bacillus mycoides DSM 2048]
          Length = 245

 Score =  327 bits (838), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 110/243 (45%), Positives = 159/243 (65%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR + ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGRGKAELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYSMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS-CGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S   +     ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQAEKVSKI--PVKDYLAATSVGVVEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  L++ QK+ + 
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAELNELLDAAEQGIFQLVEKQKEALG 238

Query: 240 NEV 242
           + V
Sbjct: 239 DIV 241


>gi|229019707|ref|ZP_04176514.1| Ribonuclease PH [Bacillus cereus AH1273]
 gi|229027352|ref|ZP_04183607.1| Ribonuclease PH [Bacillus cereus AH1272]
 gi|228733960|gb|EEL84699.1| Ribonuclease PH [Bacillus cereus AH1272]
 gi|228741614|gb|EEL91807.1| Ribonuclease PH [Bacillus cereus AH1273]
          Length = 245

 Score =  327 bits (838), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 110/243 (45%), Positives = 159/243 (65%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR + ++R I +     K+ EGS L++ GDT ++ +AT+EE+VP ++R    GW+T
Sbjct: 1   MRVDGRGQAELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQ
Sbjct: 61  AEYSMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS-CGMLCGYPIVDLDY 179
           ADGGTRTA+ITGA+VA+    + +       ++   +K ++AA S   +     ++DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFEKLLQADKVSKI--PVKDYLAATSVGVVEEQGVVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  DVD N +MT  G  VEVQG+ E ATFS+     +L+ A+  I  L++ QK+ + 
Sbjct: 179 AEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAELNELLDAAEQGIFQLVEKQKEALG 238

Query: 240 NEV 242
           + V
Sbjct: 239 DIV 241


>gi|322835049|ref|YP_004215076.1| ribonuclease PH [Rahnella sp. Y9602]
 gi|321170250|gb|ADW75949.1| ribonuclease PH [Rahnella sp. Y9602]
          Length = 238

 Score =  327 bits (838), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 119/240 (49%), Positives = 160/240 (66%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPAGRNAQQVRPVTLTRHYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +         +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNALVAAGKL--KANPMKGMVAAVSVGIVKGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +    +L LA+  I  + + QK  ++ 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLGLLALARGGIDTIFQAQKAALAE 238


>gi|291299064|ref|YP_003510342.1| ribonuclease PH [Stackebrandtia nassauensis DSM 44728]
 gi|290568284|gb|ADD41249.1| ribonuclease PH [Stackebrandtia nassauensis DSM 44728]
          Length = 241

 Score =  327 bits (838), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 115/237 (48%), Positives = 153/237 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R  + +R +   R  +K+ EGS LV+FGDT +L TA+++  VP W R +  GW+TA
Sbjct: 3   RPDNRAPDALRPVKFQRGWTKHPEGSVLVEFGDTRVLCTASVDTGVPRWRRGSGSGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  REAV G+ GGR+ EI R+IGRALRS +DL ALG   I IDCDV+QA
Sbjct: 63  EYSMLPRATNTRGDREAVKGKIGGRTHEISRLIGRALRSCLDLKALGENTITIDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITG++VAL D +  + D     +  ++L   VAA+S G++ G P++DL+Y E
Sbjct: 123 DGGTRTAAITGSYVALQDAVTWLTDKKMARKPDKILTRSVAAVSVGVVGGTPVLDLNYVE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS+ DVD N V T  G  VEVQG+ E A F +    A+L+LA     +L   Q   +
Sbjct: 183 DSSADVDMNVVCTGDGDFVEVQGTGEEAVFDRSTLDALLDLATKGCKELTGAQVRAL 239


>gi|268593302|ref|ZP_06127523.1| tRNA nucleotidyltransferase [Providencia rettgeri DSM 1131]
 gi|291310999|gb|EFE51452.1| tRNA nucleotidyltransferase [Providencia rettgeri DSM 1131]
          Length = 237

 Score =  326 bits (837), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 118/239 (49%), Positives = 162/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + RQ +QMR I++TR  +K+AEGS L++FGDT +L  AT+EE VP +++    GW+T
Sbjct: 1   MRPADRQADQMRPITITRNYTKHAEGSVLIEFGDTKVLCNATVEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+Q GR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATNSRNQREAARGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+GA VAL D L +M +     +    LK  VAA+S G++    + DL+Y 
Sbjct: 121 ADGGTRTAAISGACVALVDALNNMVEQGKIAK--SPLKSMVAAVSVGIVNQEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM D G ++EVQG+AE   FS +   A+L LAK  +  + + Q++ + 
Sbjct: 179 EDSAAETDMNVVMMDDGRMIEVQGTAEGEPFSHEELLALLALAKTGLNTIFEAQREALK 237


>gi|225075090|ref|ZP_03718289.1| hypothetical protein NEIFLAOT_00089 [Neisseria flavescens
           NRL30031/H210]
 gi|224953574|gb|EEG34783.1| hypothetical protein NEIFLAOT_00089 [Neisseria flavescens
           NRL30031/H210]
          Length = 277

 Score =  326 bits (837), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 115/234 (49%), Positives = 167/234 (71%), Gaps = 2/234 (0%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
           GR  + +R I +T     +A+GSCL++ G+T ++ TA+++E VP ++R  + GW+TAEYG
Sbjct: 43  GRAADSLRNIKITPNFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKEQGWVTAEYG 102

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           MLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADGG
Sbjct: 103 MLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG 162

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
           TRTA+ITGA+VAL   +  +   S+       ++  VAA+S G++ G P++DLDY EDS 
Sbjct: 163 TRTASITGAYVALQIAVDKL--LSDGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDSG 220

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            D D N +MT SG I+E+QG+AE A FS +    ++ LA   IA+L++ Q+  +
Sbjct: 221 CDSDVNIIMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQQAAL 274


>gi|304399022|ref|ZP_07380891.1| ribonuclease PH [Pantoea sp. aB]
 gi|308188661|ref|YP_003932792.1| ribonuclease PH [Pantoea vagans C9-1]
 gi|304353482|gb|EFM17860.1| ribonuclease PH [Pantoea sp. aB]
 gi|308059171|gb|ADO11343.1| ribonuclease PH [Pantoea vagans C9-1]
          Length = 238

 Score =  326 bits (837), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++LTR  +K+AEGS LV+FG+T +L TA+++E VP +++    GW+T
Sbjct: 1   MRPAGRSAQQVRPVTLTRNYTKHAEGSVLVEFGETKVLCTASVDEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+I R+LR+ VDL ALG   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMAREAAKGKQGGRTLEIQRLIARSLRAAVDLKALGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +         +  +KG VAAIS G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKLVASGKL--KANPMKGMVAAISVGIVKGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +    +L LA+  I +LI+ QK  + N
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARGGIEELIQAQKAALEN 238


>gi|327439325|dbj|BAK15690.1| RNase PH [Solibacillus silvestris StLB046]
          Length = 250

 Score =  326 bits (837), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 110/240 (45%), Positives = 158/240 (65%), Gaps = 3/240 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R  N++R + +      + EGS L+  G+T ++ TAT+EEKVP ++R    GWITA
Sbjct: 3   RHDLRAVNELRPVQIDNNYLMHPEGSVLITVGNTKVICTATIEEKVPGFLRGQGKGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R +RE+ +G+  GR+ EIQR+IGRALR+VVDL ALG + + IDCDVIQA
Sbjct: 63  EYSMLPRATEQRTRRESSAGKVSGRTMEIQRLIGRALRAVVDLEALGEKTVWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYG 180
           DGGTRTA+ITGA+VA+   +  +    +K  ++  +  ++AA S G L     ++DL+Y 
Sbjct: 123 DGGTRTASITGAFVAMTQAIAKLG--VDKPFVNFPVTDYLAATSVGKLENIGAVLDLNYV 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N +MT +G  VE+QG+ E ATFS+     +L+L +  IA LI++QK  + +
Sbjct: 181 EDSAAQVDMNVIMTGAGEFVELQGTGEEATFSRSELNELLDLGEAGIAQLIEMQKTALGD 240


>gi|37928172|pdb|1UDS|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
           R126a Mutant From Aquifex Aeolicus
          Length = 255

 Score =  326 bits (837), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 114/236 (48%), Positives = 156/236 (66%), Gaps = 2/236 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+E+Q+R +S+ R   +Y EGSCL+ FG T ++ TA++ E VP W++    GWIT
Sbjct: 1   MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V GR GGR+ EIQRMIGRA+R+ V+L+ +G R I +DCDVIQ
Sbjct: 61  AEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGT TAAITGA+VA+ D +  +            +K  VAA+S G++    ++DL++ 
Sbjct: 121 ADGGTATAAITGAFVAVADAIIKLHK--EGIIEETPIKDFVAAVSVGIVNDRILLDLNFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           EDS   VD N V T SG + EV    E  +F++D    ML+LA+  I +LI+LQK 
Sbjct: 179 EDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKK 234


>gi|239948344|ref|ZP_04700097.1| ribonuclease PH [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239922620|gb|EER22644.1| ribonuclease PH [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 239

 Score =  326 bits (837), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 133/238 (55%), Positives = 170/238 (71%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ NQ+R ISL       AEGSCL+K G+TH++ +AT E  VP ++R    GWIT
Sbjct: 1   MRQSGRKSNQLRPISLELSPLVNAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST  R+KRE   G+QGGR+QEIQR+IGRA+R V+DL  LG RQIIIDCDVI 
Sbjct: 61  AEYGMLPGSTSQRIKRETALGKQGGRTQEIQRLIGRAMRCVIDLKKLGERQIIIDCDVIN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VALH  ++ +     +      L   +AAISCG+  G  I+DLDY 
Sbjct: 121 ADGGTRTAAITGSYVALHLVIRSLMK--KRVLKVNPLISQIAAISCGIYKGEAILDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  +VD+NFV   +G+++EVQG+AE+  FS++ F AML LAK  +A+L KLQ  V+
Sbjct: 179 EDSDAEVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGVAELFKLQNQVL 236


>gi|256375162|ref|YP_003098822.1| ribonuclease PH [Actinosynnema mirum DSM 43827]
 gi|255919465|gb|ACU34976.1| ribonuclease PH [Actinosynnema mirum DSM 43827]
          Length = 254

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 111/241 (46%), Positives = 160/241 (66%), Gaps = 1/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR ++ +R+I +TR   ++  GS L++FG+T +L  A++ E VP W   +  GW+T
Sbjct: 2   LRTDGRNDDVLRDIRITRGFQQWPAGSVLIEFGNTRVLCAASVTEGVPRWRSGSGLGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP +T  R  RE++ GR GGR+ EI R+IGR+LR+ +DL+ALG   I+IDCDVIQ
Sbjct: 62  AEYAMLPSATHTRGDRESIKGRVGGRTHEISRLIGRSLRACIDLAALGENTIVIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D +  +   + +    Q L   ++A+S G++ G   +DL Y 
Sbjct: 122 ADGGTRTAAITGAYVALADAVTWL-GAAGRLADPQPLSCAISAVSVGVVDGRVRLDLPYE 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  +VD N V TD+G +VEVQG+ E ATF++     ML+LA    A+L +LQ + ++ 
Sbjct: 181 EDSRAEVDMNVVATDAGTLVEVQGTGEGATFARSTLDRMLDLALQGCAELNRLQTEALAQ 240

Query: 241 E 241
            
Sbjct: 241 P 241


>gi|34581401|ref|ZP_00142881.1| ribonuclease PH [Rickettsia sibirica 246]
 gi|28262786|gb|EAA26290.1| ribonuclease PH [Rickettsia sibirica 246]
          Length = 239

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 134/238 (56%), Positives = 170/238 (71%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ NQ+R ISL       AEGSCL+K G+TH++ +AT E  VP ++R    GWIT
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST  R+KREA  G+QGGR+QEIQR+IGRA+R V+D+  LG RQIIIDCDVI 
Sbjct: 61  AEYGMLPGSTSQRIKREATLGKQGGRTQEIQRLIGRAMRCVIDVRKLGERQIIIDCDVIN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VALH  ++ +     +      L   +AAISCG+  G  I+DLDY 
Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSLMK--KRVLKVNPLISQIAAISCGIYKGEAILDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  DVD+NFV   +G+++EVQG+AE+  FS++ F AML LAK   A+L KLQ  V+
Sbjct: 179 EDSDADVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGAAELFKLQNQVL 236


>gi|254828598|ref|ZP_05233285.1| ribonuclease PH [Listeria monocytogenes FSL N3-165]
 gi|254830008|ref|ZP_05234663.1| ribonuclease PH [Listeria monocytogenes 10403S]
 gi|255025220|ref|ZP_05297206.1| ribonuclease PH [Listeria monocytogenes FSL J2-003]
 gi|258600996|gb|EEW14321.1| ribonuclease PH [Listeria monocytogenes FSL N3-165]
          Length = 248

 Score =  326 bits (836), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 163/243 (67%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ N +R I +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 1   MRVDGRESNALRNIEITPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA++A+   +  +++     +    +K  +AA S G+L  G  ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVPFAKF--PVKDFLAATSVGVLEEGGTVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N +MT SG  VE+QG+ E ATFS+     ++ L K  I++LI++QK+ + 
Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLG 238

Query: 240 NEV 242
           ++V
Sbjct: 239 DKV 241


>gi|299144136|ref|ZP_07037216.1| ribonuclease PH/Ham1 protein [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518621|gb|EFI42360.1| ribonuclease PH/Ham1 protein [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 438

 Score =  326 bits (836), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 100/241 (41%), Positives = 151/241 (62%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R+ ++MR I L    +   +GS L+K G+T ++ TA +E+KVP +++    GW++
Sbjct: 1   MR-DNRKFDEMRNIELELNYTSAPDGSVLIKCGNTKVICTAMIEDKVPFFLKGKNSGWLS 59

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            EY MLP ST  R  R+   G+  GRSQEIQR+IGR+LRS VDLS +G + I IDCDVI 
Sbjct: 60  CEYSMLPGSTSVRKVRDISRGKLDGRSQEIQRLIGRSLRSCVDLSKIGEKTIWIDCDVIS 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +I G+++AL   ++          L   +K  VAAIS G++    ++DL+Y 
Sbjct: 120 ADGGTRTTSINGSFIALSLAVK--NAIRQGIILENPIKNKVAAISVGIVENEKLLDLNYD 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VM D+  I+E+QG+AE  +FS+     +++L++  I ++  +Q  V+ +
Sbjct: 178 EDSNAQVDLNVVMNDNKEIIEIQGTAEGRSFSRKELNELIDLSEIAIDNIFNIQNKVLLD 237

Query: 241 E 241
           +
Sbjct: 238 K 238


>gi|160877892|pdb|3B4T|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
           The Mycobacterium Tuberculosis Structural Genomics
           Consortium Target Rv1340
 gi|160877893|pdb|3B4T|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
           The Mycobacterium Tuberculosis Structural Genomics
           Consortium Target Rv1340
 gi|160877894|pdb|3B4T|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
           The Mycobacterium Tuberculosis Structural Genomics
           Consortium Target Rv1340
 gi|160877895|pdb|3B4T|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
           The Mycobacterium Tuberculosis Structural Genomics
           Consortium Target Rv1340
 gi|160877896|pdb|3B4T|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
           The Mycobacterium Tuberculosis Structural Genomics
           Consortium Target Rv1340
 gi|160877897|pdb|3B4T|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Rnase Ph,
           The Mycobacterium Tuberculosis Structural Genomics
           Consortium Target Rv1340
          Length = 262

 Score =  326 bits (836), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 110/238 (46%), Positives = 158/238 (66%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  ++   GS L++FG T +L TA++ E VP W + T  GW+TA
Sbjct: 7   REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R  RE+V GR  GR+QEI R+IGR+LR+ +DL+ALG   I IDCDV+QA
Sbjct: 67  EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 127 DGGTRTAAITGAYVALADAVTYL-SAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 185

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VE+QG+ E ATF++     +L++A      L   Q+D ++
Sbjct: 186 DSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 243


>gi|171910497|ref|ZP_02925967.1| ribonuclease PH [Verrucomicrobium spinosum DSM 4136]
          Length = 269

 Score =  326 bits (836), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 117/243 (48%), Positives = 154/243 (63%), Gaps = 4/243 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GWI 59
           R   R  +Q+R +S    ++ +A GS LV FG+T ++  AT++E+VP W++      GW+
Sbjct: 3   RSDQRTPDQLRNVSFQLDIAPHATGSVLVSFGNTKVICAATIQEEVPRWMKAQGVSGGWL 62

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           TAEY MLP ST +R  R+   G+  GRSQEIQR+IGR+LR+VVDL  LG R + IDCDV+
Sbjct: 63  TAEYSMLPYSTLDRKDRDISKGKLDGRSQEIQRLIGRSLRAVVDLEKLGPRTLWIDCDVL 122

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTRTA+ITGA VA       + +        Q LK  VAAIS G+     ++DL Y
Sbjct: 123 QADGGTRTASITGACVASAIAFNRLLE--KGVLRQQPLKKKVAAISVGIFRNQALLDLCY 180

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED   DVD N VMT+ G  VE+QGS E +TFS+    AML L K  I +L KLQ +VI+
Sbjct: 181 EEDRDADVDCNLVMTEDGQFVEIQGSGEESTFSEAQLSAMLTLGKKGIVELCKLQAEVIN 240

Query: 240 NEV 242
           + V
Sbjct: 241 SAV 243


>gi|37928168|pdb|1UDO|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
           R86a Mutant From Aquifex Aeolicus
          Length = 255

 Score =  326 bits (836), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 114/236 (48%), Positives = 156/236 (66%), Gaps = 2/236 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+E+Q+R +S+ R   +Y EGSCL+ FG T ++ TA++ E VP W++    GWIT
Sbjct: 1   MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V GR GG + EIQRMIGRA+R+ V+L+ +G R I +DCDVIQ
Sbjct: 61  AEYSMLPRATQQRTIRESVQGRIGGATHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VA+ D +  +            +K  VAA+S G++    ++DL++ 
Sbjct: 121 ADGGTRTAAITGAFVAVADAIIKLHK--EGIIEETPIKDFVAAVSVGIVNDRILLDLNFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           EDS   VD N V T SG + EV    E  +F++D    ML+LA+  I +LI+LQK 
Sbjct: 179 EDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKK 234


>gi|317494714|ref|ZP_07953126.1| ribonuclease PH [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917316|gb|EFV38663.1| ribonuclease PH [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 238

 Score =  326 bits (836), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 120/240 (50%), Positives = 160/240 (66%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR   Q+R + LTR  +K+AEGS LV+FG+T +L  AT+EE VP +++    GW+T
Sbjct: 1   MRPEGRTAEQIRPLKLTRHYTKHAEGSVLVEFGETKVLCNATVEEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMAREAAKGKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +         +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNALVAAGKL--KANPMKGMVAAVSVGIVDGQAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +    +L LA+  I  +I+ QK  + N
Sbjct: 179 EDSAAETDMNVVMLEDGRMIEVQGTAEGEPFSHEELLQLLALARGGIDKIIQAQKAALEN 238


>gi|15892898|ref|NP_360612.1| ribonuclease PH [Rickettsia conorii str. Malish 7]
 gi|229586977|ref|YP_002845478.1| ribonuclease PH [Rickettsia africae ESF-5]
 gi|238651083|ref|YP_002916941.1| ribonuclease PH [Rickettsia peacockii str. Rustic]
 gi|21759407|sp|Q92GZ7|RNPH_RICCN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|259494127|sp|C3PP75|RNPH_RICAE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|259494128|sp|C4K2U2|RNPH_RICPU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|15620088|gb|AAL03513.1| ribonuclease PH [Rickettsia conorii str. Malish 7]
 gi|228022027|gb|ACP53735.1| Ribonuclease PH [Rickettsia africae ESF-5]
 gi|238625181|gb|ACR47887.1| ribonuclease PH [Rickettsia peacockii str. Rustic]
          Length = 239

 Score =  326 bits (836), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 134/238 (56%), Positives = 170/238 (71%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ NQ+R ISL       AEGSCL+K G+TH++ +AT E  VP ++R    GWIT
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST  R+KREA  G+QGGR+QEIQR+IGRA+R V+D+  LG RQIIIDCDVI 
Sbjct: 61  AEYGMLPGSTSQRIKREAALGKQGGRTQEIQRLIGRAMRCVIDVRKLGERQIIIDCDVIN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VALH  ++ +     +      L   +AAISCG+  G  I+DLDY 
Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSLMK--KRVLKVNPLISQIAAISCGIYKGEAILDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  DVD+NFV   +G+++EVQG+AE+  FS++ F AML LAK   A+L KLQ  V+
Sbjct: 179 EDSDADVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGAAELFKLQNQVL 236


>gi|257884710|ref|ZP_05664363.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,501]
 gi|257820548|gb|EEV47696.1| ribonuclease PH/Ham1 [Enterococcus faecium 1,231,501]
          Length = 451

 Score =  326 bits (836), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 121/242 (50%), Positives = 163/242 (67%), Gaps = 3/242 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+  ++R++ L   V KY EGS +++FGDT ++ +AT+E+ VP ++R T  GW+T
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R II+DCDVIQ
Sbjct: 61  AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+V+L   ++ +     K      +K H+AA+S G+L  G  + DLDY
Sbjct: 121 ADGGTRTASITGAFVSLKLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N VMT+SG  VE+QG+ E ATF  +    ML   K+ I DLIK QK  + 
Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238

Query: 240 NE 241
            E
Sbjct: 239 TE 240


>gi|138896231|ref|YP_001126684.1| ribonuclease PH [Geobacillus thermodenitrificans NG80-2]
 gi|196250189|ref|ZP_03148883.1| ribonuclease PH [Geobacillus sp. G11MC16]
 gi|166228283|sp|A4IRI5|RNPH_GEOTN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|134267744|gb|ABO67939.1| Ribonuclease PH [Geobacillus thermodenitrificans NG80-2]
 gi|196210373|gb|EDY05138.1| ribonuclease PH [Geobacillus sp. G11MC16]
          Length = 255

 Score =  326 bits (836), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 115/242 (47%), Positives = 156/242 (64%), Gaps = 3/242 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR   ++R + +     K+AEGS L++ GDT ++ TAT+E+KVP ++R    GWIT
Sbjct: 1   MRTDGRNNRELRPVHIQPHYIKHAEGSVLIEIGDTRVICTATVEDKVPPFMRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+  GR+ EIQR+IGRALRSVV+L  LG R + IDCDVIQ
Sbjct: 61  AEYGMLPRATEQRNAREASKGKVSGRTMEIQRLIGRALRSVVELEQLGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VAL   L  +        L   ++  +AA S G+   +  I+DL+Y
Sbjct: 121 ADGGTRTASITGAYVALVLALSKLVAEGKLESL--PVRDFLAATSVGIDPEHGVILDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED+   VD N VMT +G  VE+QG+ E A+FS+     +L  A+  I  LI +Q+ V+ 
Sbjct: 179 SEDARAKVDMNVVMTGAGQFVEIQGTGEEASFSRAELEELLETAQLGIEQLITIQRRVLG 238

Query: 240 NE 241
            +
Sbjct: 239 EQ 240


>gi|82523945|emb|CAI78667.1| ribonuclease PH [uncultured delta proteobacterium]
          Length = 242

 Score =  326 bits (836), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 113/241 (46%), Positives = 162/241 (67%), Gaps = 2/241 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R +GR+ N++R I++T    K   GS LV+FG+T ++  ATLE+K   +++NT  GW+TA
Sbjct: 4   RSAGRKYNELRPINITNNFLKTTAGSALVEFGNTKVICAATLEDKSAPFLKNTGRGWVTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R  RE+  G+ GGR+ EIQR+IGR+LR+V DL++ G + I +DCDVIQA
Sbjct: 64  EYSMLPASTQTRTPRESTRGKVGGRTHEIQRLIGRSLRAVCDLNSFGEKTIYMDCDVIQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITG ++AL + L+ M+  ++       +  +V+AIS G++    ++DL+Y E
Sbjct: 124 DGGTRTASITGGFIALVELLKKMK--ADGIVKEIPVNDYVSAISVGIIENKILLDLEYEE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  DVD NFVMT SG  +EVQG+AE   F ++    M  LA   I +LI LQK ++ N 
Sbjct: 182 DSKADVDMNFVMTGSGKFIEVQGTAEHVPFDKNQMHEMTTLAGQGIEELIALQKKIVGNL 241

Query: 242 V 242
           +
Sbjct: 242 I 242


>gi|315606171|ref|ZP_07881199.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312129|gb|EFU60218.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 255

 Score =  326 bits (836), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 112/242 (46%), Positives = 157/242 (64%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q+R +SLTR  S   EGS LV+FG+T +L  A+  E VP W R++  GW+T
Sbjct: 6   LRADGRTPSQLRPVSLTRGWSGTGEGSVLVEFGNTRVLCVASFTEGVPRWKRDSGEGWVT 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+QEI R+IGR+LR +VD+SALG   I++DCDV++
Sbjct: 66  AEYSMLPRATEQRSSRESVKGKVGGRTQEISRLIGRSLRGIVDVSALGENTIVLDCDVLR 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA+VAL D +   ++       ++VL   V+A+S G++ G  + DL Y 
Sbjct: 126 ADGGTRTASVTGAYVALADAIAWAKERGILTPSARVLTDSVSAVSVGIIDGTAMADLPYV 185

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED     D N V T  G  +EVQG+AE A FS++    +L+LA    A L + QK  +  
Sbjct: 186 EDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFSREELSELLDLATAGNAQLARAQKLALEA 245

Query: 241 EV 242
            +
Sbjct: 246 PL 247


>gi|157803502|ref|YP_001492051.1| ribonuclease PH [Rickettsia canadensis str. McKiel]
 gi|166228312|sp|A8EY33|RNPH_RICCK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157784765|gb|ABV73266.1| ribonuclease PH [Rickettsia canadensis str. McKiel]
          Length = 239

 Score =  325 bits (835), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 134/238 (56%), Positives = 169/238 (71%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ NQ+R ISL       AEGSCL+K G TH++ +AT E  VP ++R    GW+T
Sbjct: 1   MRQSGRKSNQLRPISLELSPLVNAEGSCLIKIGKTHVICSATCETTVPPFLRGQNQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST  R+KREAV G+QGGR+QEIQR+IGRA+R V+DL  LG RQIIIDCDVI 
Sbjct: 61  AEYGMLPSSTSQRIKREAVLGKQGGRTQEIQRLIGRAMRCVIDLKKLGERQIIIDCDVIN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG+++ALH  ++ +   S        L   +AAISCG+  G  I+DLDY 
Sbjct: 121 ADGGTRTAAITGSYIALHLAIRLLMKKS--ILKVNPLISQIAAISCGIYKGETILDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  +VD NFV   +G+++EVQG+AE+  FS++ F AML LAK   A+L KLQ  V+
Sbjct: 179 EDSDAEVDINFVFAGNGNLIEVQGTAEKKPFSEEQFLAMLKLAKVGAAELFKLQNQVL 236


>gi|78223083|ref|YP_384830.1| ribonuclease PH [Geobacter metallireducens GS-15]
 gi|123571779|sp|Q39UG9|RNPH_GEOMG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|78194338|gb|ABB32105.1| RNAse PH [Geobacter metallireducens GS-15]
          Length = 238

 Score =  325 bits (835), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 161/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+   +R I++TR   K+AEG+ LV+FGDT ++ TA++EE VP ++R    GW+T
Sbjct: 1   MRSDGREAGSLRGINITRHYIKHAEGAVLVEFGDTKVICTASVEESVPPFLRGKGTGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST  R  REA  G+ GGR+ EIQR+IGR+LR+V DL+ LG R ++IDCDVIQ
Sbjct: 61  AEYSMLPRSTHTRSSREAARGKIGGRTHEIQRLIGRSLRAVTDLTLLGERSVLIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D L  + +      L   +K  VAA+S G++ G  ++DL+Y 
Sbjct: 121 ADGGTRTASITGAYVALVDALHLLVERGVLPLL--PIKEAVAAVSVGIVDGNILLDLNYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  +VD NFVMT S   VEVQG+AE   F+ +    M   A + I  L  +Q + +S
Sbjct: 179 EDSAAEVDMNFVMTSSDRFVEVQGTAESEPFTVEQMDGMRVAAVEGIRKLFSIQNEALS 237


>gi|254512351|ref|ZP_05124418.1| ribonuclease PH [Rhodobacteraceae bacterium KLH11]
 gi|221536062|gb|EEE39050.1| ribonuclease PH [Rhodobacteraceae bacterium KLH11]
          Length = 237

 Score =  325 bits (835), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 122/227 (53%), Positives = 164/227 (72%), Gaps = 2/227 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  N+MR +S+    +K+AEGSCL+K GDTH+L TAT+E++VP +I+ +  GW+T
Sbjct: 1   MRPSGRDLNEMRAVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA SG+QGGR+ EIQR+IGRALR+ VD  ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +    +    S  L   VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMKAGDVI--SDPLVDPVAAVSCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
           EDS   VD NF+MT +G ++EVQ SAE + FS+     +++LA+  +
Sbjct: 179 EDSEAGVDGNFIMTGTGKLIEVQMSAEGSVFSRTQMDQLMDLAEKGV 225


>gi|8102038|gb|AAF72714.1|AF263927_2 ribonuclease PH [Carnobacterium sp. St2]
          Length = 364

 Score =  325 bits (835), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 111/241 (46%), Positives = 153/241 (63%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +++R +++     K+ EGS LV FGDT ++  AT+E KVP ++R    GW+ 
Sbjct: 1   MRTNTRKNDELRLVTIETNYLKHPEGSVLVSFGDTKVICNATVEPKVPPFMRGQGKGWVH 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+  GR+ EIQR+I R+LRSV+DL  LG R I +DCDVIQ
Sbjct: 61  AEYAMLPRATNTRTIREAAKGKLTGRTMEIQRLIARSLRSVIDLEKLGERAITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   +Q + D          +K ++AA+S G+   G  ++DLDY
Sbjct: 121 ADGGTRTASITGAFVALKMAIQTLLDSGQL--TEDPVKENIAAVSVGITKQGEAVLDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS+  VD N  MT +G   E+QG+ E ATFS D    ML L K  + +L ++Q   + 
Sbjct: 179 LEDSSAAVDMNLFMTANGEFFELQGTGEEATFSNDQLMEMLELGKKGLNELFQIQTQALK 238

Query: 240 N 240
            
Sbjct: 239 E 239


>gi|238794526|ref|ZP_04638134.1| Ribonuclease PH [Yersinia intermedia ATCC 29909]
 gi|238726106|gb|EEQ17652.1| Ribonuclease PH [Yersinia intermedia ATCC 29909]
          Length = 238

 Score =  325 bits (835), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 119/240 (49%), Positives = 162/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +         +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNKLVAAGKL--KANPMKGLVAAVSVGIVKGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +   A+L LA+  I  + + QK V++ 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLALARGGIETIFQAQKAVLAQ 238


>gi|54023062|ref|YP_117304.1| ribonuclease PH [Nocardia farcinica IFM 10152]
 gi|61215825|sp|Q5Z0V1|RNPH_NOCFA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|54014570|dbj|BAD55940.1| putative RNase PH [Nocardia farcinica IFM 10152]
          Length = 257

 Score =  325 bits (835), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 108/238 (45%), Positives = 156/238 (65%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++RE+ +TR  + +  GS LV+FG T ++ TA++ E VP W R++  GW+TA
Sbjct: 4   RADGRADDELREVRITRGFTTHPAGSVLVEFGQTRVMCTASVTEGVPAWRRDSGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V GR GGR+QEI R++GR+LR+ +DL+A+G   I IDCDV+QA
Sbjct: 64  EYAMLPAATHTRSGRESVKGRVGGRTQEISRLVGRSLRACIDLAAIGENTIAIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +          Q +   +AA+S G++ G   +DL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVTWLGAAGALAD-PQPISCAIAAVSVGVVDGRVRLDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VE+QG+ E ATF +     +L+ A      L  +QK+ ++
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDAALAGCEQLFAVQKEALA 240


>gi|261337982|ref|ZP_05965866.1| tRNA nucleotidyltransferase [Bifidobacterium gallicum DSM 20093]
 gi|270277482|gb|EFA23336.1| tRNA nucleotidyltransferase [Bifidobacterium gallicum DSM 20093]
          Length = 255

 Score =  325 bits (835), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 107/239 (44%), Positives = 155/239 (64%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  ++MR I +T   +   EGS L+  G+T ++ TAT  + VP W +++  GW+T
Sbjct: 14  VRPDGRAVDEMRPIRITDSFTDVPEGSVLIACGNTRVMCTATFTQGVPRWRKDSGQGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR VV++ ALG  QI +DCDV+Q
Sbjct: 74  AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVNMKALGENQIQLDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA+ + L+  E+        +V+K  V+A+S G++ G P++DL Y 
Sbjct: 134 ADGGTRTASITGAYVAMVEALRWAEERRFIRSADKVIKDSVSAVSVGVINGTPMLDLPYI 193

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N  MT SG  +E+QG+AE   F++D    +L+LA     +L   Q+ V++
Sbjct: 194 EDSQAMTDMNVAMTGSGEFIEIQGTAEHRPFTRDELNVLLDLATKGNKELQAAQRAVLN 252


>gi|269120934|ref|YP_003309111.1| ribonuclease PH [Sebaldella termitidis ATCC 33386]
 gi|268614812|gb|ACZ09180.1| ribonuclease PH [Sebaldella termitidis ATCC 33386]
          Length = 232

 Score =  325 bits (835), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 104/233 (44%), Positives = 151/233 (64%), Gaps = 2/233 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +++REI +T+    + EGS L++FG+T ++  AT+EEKVP +++ +  GW+T
Sbjct: 1   MRNNNRKNDELREIKITKNFIMHPEGSVLIEFGNTKVICNATVEEKVPPFLKGSGSGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+PR+T  R +RE   G+  GR+ EIQR+IGR+LRS VDL  LG R II+DCDVIQ
Sbjct: 61  AEYSMIPRATNVRTQREVNKGKPTGRTMEIQRLIGRSLRSAVDLKKLGERTIIVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG ++AL   ++ +   ++       +   VAAIS G + G  ++DL+Y 
Sbjct: 121 ADGGTRTASITGGYLALETAVEQL--INSGLLSQNPVIAKVAAISVGKVKGEILLDLEYS 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           EDS  +VD N VM      +E+QG+ E ATFS D     +  AK     L ++
Sbjct: 179 EDSLAEVDMNIVMNSKNEFIEIQGTGEEATFSYDELIKFIEAAKKGFEKLFEI 231


>gi|47097379|ref|ZP_00234931.1| ribonuclease PH [Listeria monocytogenes str. 1/2a F6854]
 gi|254898601|ref|ZP_05258525.1| ribonuclease PH [Listeria monocytogenes J0161]
 gi|254911909|ref|ZP_05261921.1| ribonuclease PH [Listeria monocytogenes J2818]
 gi|254936235|ref|ZP_05267932.1| ribonuclease PH [Listeria monocytogenes F6900]
 gi|47014251|gb|EAL05232.1| ribonuclease PH [Listeria monocytogenes str. 1/2a F6854]
 gi|258608825|gb|EEW21433.1| ribonuclease PH [Listeria monocytogenes F6900]
 gi|293589869|gb|EFF98203.1| ribonuclease PH [Listeria monocytogenes J2818]
          Length = 248

 Score =  325 bits (834), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ N +R I +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 1   MRVDGRESNALRNIEITPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA++A+   +  +++     +    +K  +AA S G+L  G  ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVPFAKF--PVKDFLAATSVGVLEEGGTVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N +MT SG  VE+QG+ E ATFS+     ++ L K  I +LI++QK+ + 
Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGICELIEIQKETLG 238

Query: 240 NEV 242
           ++V
Sbjct: 239 DKV 241


>gi|167644139|ref|YP_001681802.1| ribonuclease PH [Caulobacter sp. K31]
 gi|189043756|sp|B0T369|RNPH_CAUSK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|167346569|gb|ABZ69304.1| ribonuclease PH [Caulobacter sp. K31]
          Length = 242

 Score =  325 bits (834), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 124/239 (51%), Positives = 168/239 (70%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  + +R ++L   V++YAEGSCL+ FG T +L TAT+EE VP W+RN   GW+T
Sbjct: 1   MRPSERAPDVLRVVTLETGVNRYAEGSCLISFGHTKVLVTATVEENVPGWMRNKGAGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA  G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRATHTRGRREAALGKQSGRTQEIQRLIGRSLRAVVDLKALGERQISLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVAL   + ++ +       +  + G VAA+SCG+    P++DLDY 
Sbjct: 121 ADGGTRTAAITGAWVALRIAVNYLLE--EGVLKTDPIVGQVAAVSCGVFKDTPVLDLDYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D+NFV+T+ G IVE+Q + E+  F++  F  +  LA+  I +L   Q + +S
Sbjct: 179 EDSQAEADSNFVLTNVGDIVEIQATGEKRGFTRGEFEQLFALAEKGIGELFVKQLEAVS 237


>gi|77919626|ref|YP_357441.1| ribonuclease PH [Pelobacter carbinolicus DSM 2380]
 gi|77545709|gb|ABA89271.1| RNAse PH [Pelobacter carbinolicus DSM 2380]
          Length = 244

 Score =  325 bits (834), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 121/238 (50%), Positives = 159/238 (66%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R I  +R  ++YAEGS LV FG+T +L  AT+EE VP ++R    GWITA
Sbjct: 8   RADGRTPSELRPIYFSRGFTRYAEGSVLVSFGETRVLCNATVEEGVPSFLRGQGQGWITA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  REA  G+ GGR+ EIQR+IGR+LR++ DL  LG R I+IDCDV+QA
Sbjct: 68  EYSMLPRATQVRSAREATRGKVGGRTSEIQRLIGRSLRAICDLEMLGERTILIDCDVLQA 127

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VALHD +  +   +        L+  V+A+S G++ G+P++DLDY E
Sbjct: 128 DGGTRTAAITGAYVALHDAVYGLVRENQL--SDSPLRDSVSAVSVGLVDGHPLLDLDYAE 185

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D    VD NFV+T SGH VEVQG+AE   FS +    + NLA     DL +LQ   + 
Sbjct: 186 DFRAAVDMNFVITGSGHFVEVQGTAEERPFSMEELDDLRNLALAGCRDLHRLQLRALE 243


>gi|15608480|ref|NP_215856.1| ribonuclease PH [Mycobacterium tuberculosis H37Rv]
 gi|15840795|ref|NP_335832.1| ribonuclease PH [Mycobacterium tuberculosis CDC1551]
 gi|121637271|ref|YP_977494.1| ribonuclease PH [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148661129|ref|YP_001282652.1| ribonuclease PH [Mycobacterium tuberculosis H37Ra]
 gi|148822561|ref|YP_001287315.1| ribonuclease PH [Mycobacterium tuberculosis F11]
 gi|167969088|ref|ZP_02551365.1| ribonuclease PH [Mycobacterium tuberculosis H37Ra]
 gi|215403187|ref|ZP_03415368.1| ribonuclease PH [Mycobacterium tuberculosis 02_1987]
 gi|215410985|ref|ZP_03419793.1| ribonuclease PH [Mycobacterium tuberculosis 94_M4241A]
 gi|215426669|ref|ZP_03424588.1| ribonuclease PH [Mycobacterium tuberculosis T92]
 gi|215430226|ref|ZP_03428145.1| ribonuclease PH [Mycobacterium tuberculosis EAS054]
 gi|215445522|ref|ZP_03432274.1| ribonuclease PH [Mycobacterium tuberculosis T85]
 gi|218753051|ref|ZP_03531847.1| ribonuclease PH [Mycobacterium tuberculosis GM 1503]
 gi|219557243|ref|ZP_03536319.1| ribonuclease PH [Mycobacterium tuberculosis T17]
 gi|224989745|ref|YP_002644432.1| ribonuclease [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253799612|ref|YP_003032613.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 1435]
 gi|254364236|ref|ZP_04980282.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254550352|ref|ZP_05140799.1| ribonuclease PH [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260186279|ref|ZP_05763753.1| ribonuclease PH [Mycobacterium tuberculosis CPHL_A]
 gi|260200397|ref|ZP_05767888.1| ribonuclease PH [Mycobacterium tuberculosis T46]
 gi|289442782|ref|ZP_06432526.1| ribonuclease PH [Mycobacterium tuberculosis T46]
 gi|289446935|ref|ZP_06436679.1| ribonuclease rphA [Mycobacterium tuberculosis CPHL_A]
 gi|289554868|ref|ZP_06444078.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 605]
 gi|289569353|ref|ZP_06449580.1| ribonuclease rphA [Mycobacterium tuberculosis T17]
 gi|289745092|ref|ZP_06504470.1| ribonuclease PH [Mycobacterium tuberculosis 02_1987]
 gi|289749896|ref|ZP_06509274.1| ribonuclease rphA [Mycobacterium tuberculosis T92]
 gi|289753422|ref|ZP_06512800.1| ribonuclease rphA [Mycobacterium tuberculosis EAS054]
 gi|289757445|ref|ZP_06516823.1| ribonuclease rphA [Mycobacterium tuberculosis T85]
 gi|289761501|ref|ZP_06520879.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis GM 1503]
 gi|294994898|ref|ZP_06800589.1| ribonuclease PH [Mycobacterium tuberculosis 210]
 gi|297633893|ref|ZP_06951673.1| ribonuclease PH [Mycobacterium tuberculosis KZN 4207]
 gi|297730881|ref|ZP_06959999.1| ribonuclease PH [Mycobacterium tuberculosis KZN R506]
 gi|298524847|ref|ZP_07012256.1| ribonuclease PH [Mycobacterium tuberculosis 94_M4241A]
 gi|306775519|ref|ZP_07413856.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu001]
 gi|306780669|ref|ZP_07419006.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu002]
 gi|306784070|ref|ZP_07422392.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu003]
 gi|306788431|ref|ZP_07426753.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu004]
 gi|306792760|ref|ZP_07431062.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu005]
 gi|306797164|ref|ZP_07435466.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu006]
 gi|306803043|ref|ZP_07439711.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu008]
 gi|306807237|ref|ZP_07443905.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu007]
 gi|306967434|ref|ZP_07480095.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu009]
 gi|307079339|ref|ZP_07488509.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu011]
 gi|307083904|ref|ZP_07493017.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu012]
 gi|313658214|ref|ZP_07815094.1| ribonuclease PH [Mycobacterium tuberculosis KZN V2475]
 gi|1710618|sp|Q10628|RNPH_MYCTU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228291|sp|A1KID0|RNPH_MYCBP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228295|sp|A5U240|RNPH_MYCTA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808595|sp|C1AMY5|RNPH_MYCBT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|1419043|emb|CAA99973.1| PROBABLE RIBONUCLEASE RPHA (RNase PH) (tRNA nucleotidyltransferase)
           [Mycobacterium tuberculosis H37Rv]
 gi|13880990|gb|AAK45646.1| ribonuclease PH [Mycobacterium tuberculosis CDC1551]
 gi|121492918|emb|CAL71389.1| Probable ribonuclease rphA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|134149750|gb|EBA41795.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148505281|gb|ABQ73090.1| ribonuclease PH [Mycobacterium tuberculosis H37Ra]
 gi|148721088|gb|ABR05713.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis F11]
 gi|224772858|dbj|BAH25664.1| ribonuclease [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253321115|gb|ACT25718.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 1435]
 gi|289415701|gb|EFD12941.1| ribonuclease PH [Mycobacterium tuberculosis T46]
 gi|289419893|gb|EFD17094.1| ribonuclease rphA [Mycobacterium tuberculosis CPHL_A]
 gi|289439500|gb|EFD21993.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 605]
 gi|289543107|gb|EFD46755.1| ribonuclease rphA [Mycobacterium tuberculosis T17]
 gi|289685620|gb|EFD53108.1| ribonuclease PH [Mycobacterium tuberculosis 02_1987]
 gi|289690483|gb|EFD57912.1| ribonuclease rphA [Mycobacterium tuberculosis T92]
 gi|289694009|gb|EFD61438.1| ribonuclease rphA [Mycobacterium tuberculosis EAS054]
 gi|289709007|gb|EFD73023.1| ribonuclease rphA (RNase ph) [Mycobacterium tuberculosis GM 1503]
 gi|289713009|gb|EFD77021.1| ribonuclease rphA [Mycobacterium tuberculosis T85]
 gi|298494641|gb|EFI29935.1| ribonuclease PH [Mycobacterium tuberculosis 94_M4241A]
 gi|308215991|gb|EFO75390.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu001]
 gi|308326498|gb|EFP15349.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu002]
 gi|308331139|gb|EFP19990.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu003]
 gi|308334980|gb|EFP23831.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu004]
 gi|308338786|gb|EFP27637.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu005]
 gi|308342427|gb|EFP31278.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu006]
 gi|308346338|gb|EFP35189.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu007]
 gi|308350261|gb|EFP39112.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu008]
 gi|308354910|gb|EFP43761.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu009]
 gi|308362791|gb|EFP51642.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu011]
 gi|308366438|gb|EFP55289.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu012]
 gi|323720157|gb|EGB29260.1| ribonuclease rphA [Mycobacterium tuberculosis CDC1551A]
 gi|326902963|gb|EGE49896.1| ribonuclease rphA [Mycobacterium tuberculosis W-148]
 gi|328459358|gb|AEB04781.1| ribonuclease rphA [Mycobacterium tuberculosis KZN 4207]
          Length = 259

 Score =  325 bits (834), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 110/238 (46%), Positives = 158/238 (66%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  ++   GS L++FG T +L TA++ E VP W + T  GW+TA
Sbjct: 4   REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R  RE+V GR  GR+QEI R+IGR+LR+ +DL+ALG   I IDCDV+QA
Sbjct: 64  EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVTYL-SAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VE+QG+ E ATF++     +L++A      L   Q+D ++
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240


>gi|89067431|ref|ZP_01154944.1| ribonuclease PH [Oceanicola granulosus HTCC2516]
 gi|89047000|gb|EAR53054.1| ribonuclease PH [Oceanicola granulosus HTCC2516]
          Length = 236

 Score =  325 bits (834), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 128/239 (53%), Positives = 172/239 (71%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   QMR +++   V+K+AEGSCL+K GDTH+L TA++E++ P ++RNT  GW+T
Sbjct: 1   MRPSGRDLGQMRPVTIETGVTKHAEGSCLIKMGDTHVLCTASIEDRPPPFLRNTGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRSTG+R++REA +G+QGGR+ EIQR+IGR+LR+ V+ +ALG RQI +DCDV+Q
Sbjct: 61  AEYGMLPRSTGSRMRREATAGKQGGRTVEIQRLIGRSLRAGVERAALGERQITVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +    +    S  L   V+A+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALRLAVNKLMQAGDV--TSDPLGDPVSAVSCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD NFVMT  G ++EVQ SAE ATFS+D    +L LA+  + +L  LQ   + 
Sbjct: 179 EDSVAGVDGNFVMTG-GRMIEVQMSAEGATFSRDELEQLLGLAERGVGELAALQLAAVG 236


>gi|295399427|ref|ZP_06809409.1| ribonuclease PH [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978893|gb|EFG54489.1| ribonuclease PH [Geobacillus thermoglucosidasius C56-YS93]
          Length = 256

 Score =  325 bits (834), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 108/241 (44%), Positives = 156/241 (64%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+  Q+R + + +   K+AEGS  +  GDT ++ TA++++KVP ++R    GWIT
Sbjct: 1   MRVDGRENKQLRPVHMEKHFIKHAEGSVFITVGDTKVICTASIDDKVPPFMRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALRSVV+L  LG + + IDCDVIQ
Sbjct: 61  AEYAMLPRATEQRNVRESSKGKVSGRTMEIQRLIGRALRSVVNLDKLGEKTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VA+      + +   K      +   +AA S G+   +  I+DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFAKLVE--EKKLDELPVNDFLAATSVGIDPEHGIILDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED+  +VD N VMT +G  VE+QG+ E ATFS++    +L+ A+  I  LI +Q+  + 
Sbjct: 179 TEDARAEVDMNVVMTGAGRFVEIQGTGEEATFSREQLNELLDTAEVGIRQLIDIQRKTLG 238

Query: 240 N 240
            
Sbjct: 239 E 239


>gi|325963801|ref|YP_004241707.1| RNAse PH [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469888|gb|ADX73573.1| RNAse PH [Arthrobacter phenanthrenivorans Sphe3]
          Length = 252

 Score =  325 bits (834), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 113/242 (46%), Positives = 162/242 (66%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q+R IS+TR  S  AEGS L++FG+T +L TA+L   VP W++    GW+T
Sbjct: 11  VRADGRAPDQLRPISITRGWSNQAEGSALIEFGNTRVLCTASLTAGVPRWLKGEGRGWVT 70

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LRS++D  ALG   I++DCDV+Q
Sbjct: 71  AEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D ++   D     + +Q +   +AA+S G++ G P++DL Y 
Sbjct: 131 ADGGTRTAAITGAYVALADSIRFARDNQLIGKNAQPIIDTIAAVSVGIIDGVPMLDLPYV 190

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   + D N V+T SG  VEVQG+AE A F +     +L+LA    + L  +Q++ +++
Sbjct: 191 EDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRAELDQLLDLALLGTSQLAAIQRETLAD 250

Query: 241 EV 242
            +
Sbjct: 251 TL 252


>gi|169335158|ref|ZP_02862351.1| hypothetical protein ANASTE_01565 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257896|gb|EDS71862.1| hypothetical protein ANASTE_01565 [Anaerofustis stercorihominis DSM
           17244]
          Length = 241

 Score =  325 bits (834), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 105/239 (43%), Positives = 153/239 (64%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R+ ++ RE+ +TR  + Y +G  L++ G+T ++ +A +E +VP ++R    GWIT
Sbjct: 2   VRSDNRKFDEKREVKITRNYTMYPDGCVLIESGNTKVICSAFIENRVPPFLRGEGTGWIT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            EY MLP ST  R +R+    +  GRS EIQR+IGR+LRSVVDLS LG + I+IDCDVIQ
Sbjct: 62  CEYSMLPSSTQTRKQRDINRLKLDGRSSEIQRLIGRSLRSVVDLSILGEKTIMIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITGA+VAL+D L  M +     +L   L   +AAIS G++   P++DL Y 
Sbjct: 122 ADGGTRVASITGAFVALYDALSKMVEKGEIERL--PLTSFLAAISVGIVENEPLLDLCYI 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    D N VM + G  +E+  + E+    ++    +L LAK  I +LI++QK+V+ 
Sbjct: 180 EDSNAIADMNVVMNEYGEFIELGMTGEKRPIKEEELNKLLILAKKGIKELIEIQKEVLG 238


>gi|270308459|ref|YP_003330517.1| ribonuclease PH [Dehalococcoides sp. VS]
 gi|270154351|gb|ACZ62189.1| ribonuclease PH [Dehalococcoides sp. VS]
          Length = 239

 Score =  325 bits (834), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 110/233 (47%), Positives = 150/233 (64%), Gaps = 2/233 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R I++T     +AEGS L++ G T ++ + ++E+KVP ++RN+  GW+TA
Sbjct: 3   RGDGRNFNQLRPITITPGFQSFAEGSVLIEQGKTRVICSVSMEDKVPQFLRNSGTGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R +R++ +G+  GRSQEIQR+IGR+LRS VDL+ALG R  IIDCDVIQA
Sbjct: 63  EYSMLPRSTVTRTQRDSSAGKISGRSQEIQRLIGRSLRSCVDLTALGERSFIIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTA+ITGA++AL+   + M D              VAA+S  +  G  ++D  Y E
Sbjct: 123 DAGTRTASITGAYIALYLAFKKMVDMG--ILSKMPFTSQVAAVSVSIFKGNIVLDPCYDE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D   +VD N VM D    VE+QG+AE  TFS+D    +L L +  I  L  +Q
Sbjct: 181 DFQAEVDFNLVMNDRAEFVEIQGTAEGKTFSRDTLDQVLKLGESGIKQLFDIQ 233


>gi|312110014|ref|YP_003988330.1| ribonuclease PH [Geobacillus sp. Y4.1MC1]
 gi|311215115|gb|ADP73719.1| ribonuclease PH [Geobacillus sp. Y4.1MC1]
          Length = 256

 Score =  325 bits (833), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 108/241 (44%), Positives = 156/241 (64%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+  Q+R + + +   K+AEGS  +  GDT ++ TA++++KVP ++R    GWIT
Sbjct: 1   MRVDGRENKQLRPVHMEKHFIKHAEGSVFITVGDTKVICTASIDDKVPPFMRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALRSVV+L  LG + + IDCDVIQ
Sbjct: 61  AEYAMLPRATEQRNVRESSKGKVSGRTMEIQRLIGRALRSVVNLDKLGEKTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VA+      + +   K      +   +AA S G+   +  I+DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFAKLVE--EKKLDELPVNDFLAATSVGIDPEHGIILDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED+  +VD N VMT +G  VE+QG+ E ATFS++    +L+ A+  I  LI +Q+  + 
Sbjct: 179 TEDARAEVDMNVVMTGAGRFVEIQGTGEEATFSREQLNELLDTAEVGIRQLIDIQRKTLG 238

Query: 240 N 240
            
Sbjct: 239 E 239


>gi|15827593|ref|NP_301856.1| ribonuclease PH [Mycobacterium leprae TN]
 gi|221230070|ref|YP_002503486.1| ribonuclease PH [Mycobacterium leprae Br4923]
 gi|585906|sp|P37939|RNPH_MYCLE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808596|sp|B8ZR59|RNPH_MYCLB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|466905|gb|AAA50880.1| rnpH [Mycobacterium leprae]
 gi|13093144|emb|CAC31555.1| ribonuclease PH [Mycobacterium leprae]
 gi|219933177|emb|CAR71269.1| ribonuclease PH [Mycobacterium leprae Br4923]
          Length = 259

 Score =  325 bits (833), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 104/238 (43%), Positives = 155/238 (65%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  +++  GS L++FG T ++ TA+  E VP W + +  GW+TA
Sbjct: 4   RADGRLDDELRAVVITRGFTEHPAGSVLIEFGHTKVMCTASPTEGVPRWRKGSGKGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE+V GR  GR+QEI R+IGR+LR+ +DL+ALG   I +DCDV+QA
Sbjct: 64  EYAMLPSATHTRSERESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAA+TGA+VAL D + ++          + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAVTGAYVALADAVTYLSAAGRLLD-PRPLSCAIAAVSVGVVDGRIRVDLSYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N + TD+G +VE+QG+ E ATF +     +L++A      L   Q+D ++
Sbjct: 183 DSRAEVDMNVIATDTGTLVEIQGTGEGATFPRSTLDKLLDMALGACDKLFVAQRDALA 240


>gi|255019644|ref|ZP_05291723.1| Ribonuclease PH [Acidithiobacillus caldus ATCC 51756]
 gi|254970867|gb|EET28350.1| Ribonuclease PH [Acidithiobacillus caldus ATCC 51756]
          Length = 241

 Score =  325 bits (833), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 124/234 (52%), Positives = 155/234 (66%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR    +R + + R  +KYAEGS L+  GDT +L TA++E+KVP +++    GW+TA
Sbjct: 3   RPSGRDAQTLRPVEIIRPFTKYAEGSVLIACGDTRVLCTASIEDKVPPFLKGQGRGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R+ REA  G+ GGR+ EIQR+IGR+LR+ VDL ALG R + IDCDV+QA
Sbjct: 63  EYGMLPRSTQERMPREAAKGKIGGRTHEIQRLIGRSLRAAVDLEALGERTVWIDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA +AL D LQ +             +  VAA+S G+     I+DLDY E
Sbjct: 123 DGGTRTASITGACIALADALQGL--LQRGVLTHNPWRHWVAAVSVGIREDEAILDLDYAE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DST +VD N VMTD G  VEVQG+AE A FS      ML LA+  I  LI  QK
Sbjct: 181 DSTAEVDMNVVMTDDGRFVEVQGTAEGAAFSAARMADMLLLARRGIDRLIARQK 234


>gi|126652649|ref|ZP_01724810.1| ribonuclease PH [Bacillus sp. B14905]
 gi|126590498|gb|EAZ84616.1| ribonuclease PH [Bacillus sp. B14905]
          Length = 248

 Score =  325 bits (833), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 107/241 (44%), Positives = 154/241 (63%), Gaps = 3/241 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R + +      + EGS L++ G+T ++ TAT+E+KVP ++R    GWITA
Sbjct: 3   RFDGRMADELRPVKMVGEYLLHPEGSVLIQVGNTKVICTATIEDKVPGFLRGQGKGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQA
Sbjct: 63  EYSMLPRATAQRTPRESSRGKVNGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYG 180
           DGGTRTA+ITGA+VA+   +    +     +    +   +AA S G++     ++DL+Y 
Sbjct: 123 DGGTRTASITGAFVAMTQAIAKFAEEKPFVKF--PVTDFLAATSVGIVEEQGAVLDLNYV 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED    VD N VMT +G  VE+QG+ E ATFS++    +L L +  I  L++LQK  ++ 
Sbjct: 181 EDVAAAVDMNIVMTGAGRFVELQGTGEEATFSREELNDLLALGEKGIQQLVELQKTALAE 240

Query: 241 E 241
           +
Sbjct: 241 Q 241


>gi|325266593|ref|ZP_08133270.1| tRNA nucleotidyltransferase [Kingella denitrificans ATCC 33394]
 gi|324982036|gb|EGC17671.1| tRNA nucleotidyltransferase [Kingella denitrificans ATCC 33394]
          Length = 292

 Score =  325 bits (833), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 113/237 (47%), Positives = 163/237 (68%), Gaps = 3/237 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R  + +R I++T     +A+GS L+  G+T ++ TAT++E +P ++R    GW+TA
Sbjct: 55  RTD-RATDALRPITITPNFLPHADGSVLMACGNTKVICTATIDENIPPFLRGKGQGWVTA 113

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLP ST +R+KREA +G+Q GR+QEIQR+IGR+LR+ VD++ LG RQI+IDCDVIQA
Sbjct: 114 EYGMLPASTQSRMKREAAAGKQSGRTQEIQRLIGRSLRAAVDMTKLGERQILIDCDVIQA 173

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL   ++ +   ++       L G VAAIS G++ G P++DLDY E
Sbjct: 174 DGGTRTASITGAFVALQIAVRKL--LADGRIAENPLVGSVAAISVGVVGGVPLLDLDYPE 231

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N VM ++  I+E+QG+AE A F  D    ++ L +  I +L +LQ+  +
Sbjct: 232 DSGCDSDINLVMLNADKIIEIQGTAEGAAFGMDELQQLVALGQKGIRELSELQRQAV 288


>gi|260204601|ref|ZP_05772092.1| ribonuclease PH [Mycobacterium tuberculosis K85]
 gi|289574006|ref|ZP_06454233.1| ribonuclease rphA [Mycobacterium tuberculosis K85]
 gi|289538437|gb|EFD43015.1| ribonuclease rphA [Mycobacterium tuberculosis K85]
          Length = 259

 Score =  325 bits (833), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 110/238 (46%), Positives = 158/238 (66%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  ++   GS L++FG T +L TA++ E VP W + T  GW+TA
Sbjct: 4   REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R  RE+V GR  GR+QEI R+IGR+LR+ +DL+ALG   I IDCDV+QA
Sbjct: 64  EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVTYL-SAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VE+QG+ E ATF++     +L++A      L   Q+D ++
Sbjct: 183 DSPAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240


>gi|325290671|ref|YP_004266852.1| RNAse PH [Syntrophobotulus glycolicus DSM 8271]
 gi|324966072|gb|ADY56851.1| RNAse PH [Syntrophobotulus glycolicus DSM 8271]
          Length = 246

 Score =  325 bits (833), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 111/239 (46%), Positives = 161/239 (67%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R++ R   ++R + +TRR ++  EGS L++ G T +L TA++E++VP +++    GWITA
Sbjct: 3   RIAERNNQELRPVRITRRYTEIPEGSVLIEIGKTMVLCTASIEDRVPPFLKGAGKGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+TG R +RE+  G+  GR+ EIQR+IGRALRSVVDLS LG + I +DCDV+QA
Sbjct: 63  EYSMLPRATGVRNQRESSKGKLSGRTMEIQRLIGRALRSVVDLSKLGEKTIWLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VALHD +  +         +  +   +AA+S G + G  ++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALHDAVSFL--LGAGLLKTNPITDSLAAVSVGKVRGEYLLDLAYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  +VD N VMT SG ++EVQG+AE+  F +     +L+LA++ I  L+  Q+  +  
Sbjct: 181 DSKAEVDMNVVMTGSGKLIEVQGTAEKEPFDRKELDELLDLAENGIRTLMGYQRQALEE 239


>gi|308378909|ref|ZP_07484288.2| ribonuclease rphA [Mycobacterium tuberculosis SUMu010]
 gi|308358854|gb|EFP47705.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu010]
          Length = 296

 Score =  325 bits (833), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 110/238 (46%), Positives = 158/238 (66%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  ++   GS L++FG T +L TA++ E VP W + T  GW+TA
Sbjct: 41  REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 100

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R  RE+V GR  GR+QEI R+IGR+LR+ +DL+ALG   I IDCDV+QA
Sbjct: 101 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 160

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 161 DGGTRTAAITGAYVALADAVTYL-SAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 219

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VE+QG+ E ATF++     +L++A      L   Q+D ++
Sbjct: 220 DSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 277


>gi|254449788|ref|ZP_05063225.1| ribonuclease PH [Octadecabacter antarcticus 238]
 gi|198264194|gb|EDY88464.1| ribonuclease PH [Octadecabacter antarcticus 238]
          Length = 235

 Score =  325 bits (833), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 129/239 (53%), Positives = 172/239 (71%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ ++MR IS+   V+++AEGSCL+K GDTH+L TA+++E+VP +++N+  GW+T
Sbjct: 1   MRPSGRKIDEMRSISIEVNVTRHAEGSCLIKCGDTHVLCTASIDERVPPFLKNSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA +G Q GR+QEIQR+IGR+LR+ VD  ALG RQIIIDCDVIQ
Sbjct: 61  AEYGMLPRATNTRMRREAKNG-QSGRTQEIQRLIGRSLRAGVDRVALGERQIIIDCDVIQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +Q +    +    S  L   VAA+SCG+  G  ++DLDY 
Sbjct: 120 ADGGTRCASITGGWVALKLAVQKLMKAGDVI--SDPLLIPVAAVSCGIYAGQSVLDLDYP 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD NFVMT    ++E+Q SAE +TFS+D   AM++LA   IA+L   Q   + 
Sbjct: 178 EDSEAGVDGNFVMTGD-KLIEIQMSAEGSTFSRDQMNAMMDLADKGIAELTAAQIAAVG 235


>gi|315282015|ref|ZP_07870521.1| ribonuclease PH [Listeria marthii FSL S4-120]
 gi|313614342|gb|EFR87980.1| ribonuclease PH [Listeria marthii FSL S4-120]
          Length = 248

 Score =  325 bits (833), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+ N +R I +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 1   MRFDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA++A+   +  +++ +   +    +K  +AA S G+L  G  ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEETPFTKF--PVKDFLAATSVGVLEEGGTVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N +MT SG  VE+QG+ E ATFS+     ++ L K  I++LI++QK+ + 
Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGISELIEIQKETLG 238

Query: 240 NEV 242
            +V
Sbjct: 239 EKV 241


>gi|258516735|ref|YP_003192957.1| ribonuclease PH [Desulfotomaculum acetoxidans DSM 771]
 gi|257780440|gb|ACV64334.1| ribonuclease PH [Desulfotomaculum acetoxidans DSM 771]
          Length = 244

 Score =  325 bits (833), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 117/239 (48%), Positives = 162/239 (67%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ ++MR++ +TR  +KYAEGS L++ GDTH+L TAT+E+KVP ++R    GW+TA
Sbjct: 3   RVDGRKPDEMRQVRMTRNFNKYAEGSVLIEVGDTHVLCTATVEDKVPPFLRGANKGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE   G+  GR+ EIQR+IGRALRSVV+L ALG R +++DCDV+QA
Sbjct: 63  EYAMLPRATDLRTGRE--RGKVSGRTMEIQRLIGRALRSVVNLEALGERTVLVDCDVLQA 120

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA+ D L  +       +    +K  +AA S G +    ++DL Y E
Sbjct: 121 DGGTRTASITGAFVAMTDALYKLAVNGQIKKF--PIKEFIAATSVGRVNNEMVLDLCYKE 178

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  +VD N VMT     VE+QG+ E ATFS+    ++L+LA   I  LI  Q +V+ +
Sbjct: 179 DSAAEVDMNIVMTGGDRFVEIQGTGEEATFSRAEVNSLLDLAAGGIKSLIAFQSEVLGS 237


>gi|261346766|ref|ZP_05974410.1| tRNA nucleotidyltransferase [Providencia rustigianii DSM 4541]
 gi|282565165|gb|EFB70700.1| tRNA nucleotidyltransferase [Providencia rustigianii DSM 4541]
          Length = 237

 Score =  325 bits (833), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 116/239 (48%), Positives = 160/239 (66%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  +QMR I +TR  +K+AEGS L++FGDT +L TAT+E+ VP +++    GW+T
Sbjct: 1   MRPAGRLADQMRPIKITRNYTKHAEGSVLIEFGDTKVLCTATVEDGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+Q GR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATNSRNQREAAKGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L +M   +        LK  VAA+S G++    + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALVDALNNM--IAQGKITKSPLKAMVAAVSVGIVKQEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM D G ++EVQG+AE   FS +    +L LAK  +  + + Q++ + 
Sbjct: 179 EDSAAETDMNVVMMDDGRMIEVQGTAEGEPFSHEELLELLALAKTGLDTIFEAQREALK 237


>gi|293569789|ref|ZP_06680876.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1071]
 gi|291587537|gb|EFF19414.1| ribonuclease PH/Ham1 protein [Enterococcus faecium E1071]
          Length = 451

 Score =  325 bits (833), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 120/242 (49%), Positives = 163/242 (67%), Gaps = 3/242 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+  ++R++ L   V KY EGS +++FGDT ++ +AT+E+ VP ++R T  GW+T
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           A+Y MLPR+T  R +RE+  G+  GR+ EIQR+IGR+LR+VVDL  +G R II+DCDVIQ
Sbjct: 61  AKYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKIGERSIIVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   ++ +     K      +K H+AA+S G+L  G  + DLDY
Sbjct: 121 ADGGTRTASITGAFVALKLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N VMT+SG  VE+QG+ E ATF  +    ML   K+ I DLIK QK  + 
Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238

Query: 240 NE 241
            E
Sbjct: 239 TE 240


>gi|82523716|emb|CAI78497.1| hypothetical protein [uncultured beta proteobacterium]
          Length = 243

 Score =  325 bits (833), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 115/238 (48%), Positives = 156/238 (65%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  + +R +S TR  +K+AEGS LV  GDT +L TA++ +K+P   + +  GW+TA
Sbjct: 6   RPSGRAPDALRTLSFTRGFTKHAEGSVLVSMGDTRVLCTASVLDKIPPHKKGSGEGWVTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LR+VVDL  LG R + IDCDV+QA
Sbjct: 66  EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRSLRAVVDLKKLGERTLHIDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+I GA+VA+ D +  +       +    L   +AA+S G+  G+P++DLDY E
Sbjct: 126 DGGTRCASICGAYVAVADAVAGLLREGKLAET--PLNDSIAAVSVGVYEGHPVLDLDYIE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   D D N VMT SG IVE+QG+AE   FS+    A+++LA   I  +   Q+  + 
Sbjct: 184 DFECDTDMNVVMTGSGGIVEIQGTAEGVPFSRATLDALVDLAAAGIVQISTAQQAALK 241


>gi|239827937|ref|YP_002950561.1| ribonuclease PH [Geobacillus sp. WCH70]
 gi|259494121|sp|C5D5M7|RNPH_GEOSW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|239808230|gb|ACS25295.1| ribonuclease PH [Geobacillus sp. WCH70]
          Length = 255

 Score =  324 bits (832), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 108/241 (44%), Positives = 156/241 (64%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+  Q+R + + +   K+AEGS  +  GDT ++ TA++++KVP ++R    GWIT
Sbjct: 1   MRIDGRENKQLRPVHMEKHFIKHAEGSVFITVGDTKVICTASIDDKVPPFMRGGGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALRSVV+L  LG + + IDCDVIQ
Sbjct: 61  AEYAMLPRATEQRNVRESSKGKLSGRTMEIQRLIGRALRSVVNLDKLGEKTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VA+      + +   K      +   +AA S G+   +  I+DL+Y
Sbjct: 121 ADGGTRTASITGAYVAMVLAFAKLME--EKKLDELPVNDFLAATSVGIDPEHGIILDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED+  +VD N VMT +G  VE+QG+ E ATFS++    +L+ A+  I  LI +Q+  + 
Sbjct: 179 AEDARAEVDMNIVMTGAGRFVEIQGTGEEATFSREQLNELLDTAEVGIRQLIDIQRKTLG 238

Query: 240 N 240
            
Sbjct: 239 E 239


>gi|16803278|ref|NP_464763.1| ribonuclease PH [Listeria monocytogenes EGD-e]
 gi|46907457|ref|YP_013846.1| ribonuclease PH [Listeria monocytogenes serotype 4b str. F2365]
 gi|47093490|ref|ZP_00231252.1| ribonuclease PH [Listeria monocytogenes str. 4b H7858]
 gi|217964696|ref|YP_002350374.1| ribonuclease PH [Listeria monocytogenes HCC23]
 gi|224503807|ref|ZP_03672114.1| ribonuclease PH [Listeria monocytogenes FSL R2-561]
 gi|226223838|ref|YP_002757945.1| ribonuclease PH [Listeria monocytogenes Clip81459]
 gi|254823508|ref|ZP_05228509.1| ribonuclease PH [Listeria monocytogenes FSL J1-194]
 gi|254932884|ref|ZP_05266243.1| ribonuclease PH [Listeria monocytogenes HPB2262]
 gi|284801558|ref|YP_003413423.1| ribonuclease PH [Listeria monocytogenes 08-5578]
 gi|284994700|ref|YP_003416468.1| ribonuclease PH [Listeria monocytogenes 08-5923]
 gi|290893280|ref|ZP_06556266.1| ribonuclease PH [Listeria monocytogenes FSL J2-071]
 gi|21759401|sp|Q8Y7N6|RNPH_LISMO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61215964|sp|Q720J1|RNPH_LISMF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808591|sp|B8DHZ4|RNPH_LISMH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|259494123|sp|C1L2E3|RNPH_LISMC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|16410654|emb|CAC99316.1| lmo1238 [Listeria monocytogenes EGD-e]
 gi|46880725|gb|AAT04023.1| ribonuclease PH [Listeria monocytogenes serotype 4b str. F2365]
 gi|47018108|gb|EAL08879.1| ribonuclease PH [Listeria monocytogenes str. 4b H7858]
 gi|217333966|gb|ACK39760.1| ribonuclease PH [Listeria monocytogenes HCC23]
 gi|225876300|emb|CAS05009.1| Putative ribonuclease PH [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|284057120|gb|ADB68061.1| ribonuclease PH [Listeria monocytogenes 08-5578]
 gi|284060167|gb|ADB71106.1| ribonuclease PH [Listeria monocytogenes 08-5923]
 gi|290557088|gb|EFD90616.1| ribonuclease PH [Listeria monocytogenes FSL J2-071]
 gi|293584438|gb|EFF96470.1| ribonuclease PH [Listeria monocytogenes HPB2262]
 gi|293592728|gb|EFG00489.1| ribonuclease PH [Listeria monocytogenes FSL J1-194]
 gi|307570743|emb|CAR83922.1| ribonuclease PH [Listeria monocytogenes L99]
 gi|313609161|gb|EFR84844.1| ribonuclease PH [Listeria monocytogenes FSL F2-208]
 gi|328475256|gb|EGF46037.1| ribonuclease PH [Listeria monocytogenes 220]
 gi|332311624|gb|EGJ24719.1| Ribonuclease PH [Listeria monocytogenes str. Scott A]
          Length = 248

 Score =  324 bits (832), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 163/243 (67%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ N +R I +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 1   MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA++A+   +  +++     +    +K  +AA S G+L  G  ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVPFAKF--PVKDFLAATSVGVLEEGGTVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N +MT SG  VE+QG+ E ATFS+     ++ L K  I++LI++QK+ + 
Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLG 238

Query: 240 NEV 242
           ++V
Sbjct: 239 DKV 241


>gi|302381326|ref|YP_003817149.1| ribonuclease PH [Brevundimonas subvibrioides ATCC 15264]
 gi|302191954|gb|ADK99525.1| ribonuclease PH [Brevundimonas subvibrioides ATCC 15264]
          Length = 242

 Score =  324 bits (832), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 164/235 (69%), Gaps = 2/235 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R   Q+R ++L   V++YAEGSCLV FG T +L TA++EE VP W+R    GW+T
Sbjct: 1   MRPSDRTPEQLRAVTLETGVNRYAEGSCLVSFGHTKVLVTASVEENVPGWMRGKGAGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQ++IDCDVIQ
Sbjct: 61  AEYGMLPRATHTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQVLIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVA+   L ++   +        +   VAA+SCG+    P++DLDY 
Sbjct: 121 ADGGTRTASITGAWVAMATALNYLR--AEGVMKVDPILDQVAAVSCGIFADTPVLDLDYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           EDS  + D NFV+T SG IVE+Q + E+  FS+  F  +  LA+    DL  LQ+
Sbjct: 179 EDSNAEADGNFVLTGSGTIVEIQATGEKRGFSRPEFDRLFQLAELGCNDLFALQR 233


>gi|254524022|ref|ZP_05136077.1| ribonuclease PH [Stenotrophomonas sp. SKA14]
 gi|219721613|gb|EED40138.1| ribonuclease PH [Stenotrophomonas sp. SKA14]
          Length = 241

 Score =  324 bits (832), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 116/228 (50%), Positives = 157/228 (68%), Gaps = 2/228 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGRQ +Q+R + + R  +++AEGS LV FG+T +L TA++E +VP ++R    GW+TA
Sbjct: 5   RPSGRQPDQLRPVVIQRGFTRHAEGSVLVCFGETRVLCTASVENRVPGFLRGKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+QGGR+ EIQR+IGR+LR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRATHTRSDREAARGKQGGRTLEIQRLIGRSLRACVDRNALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +    +       + G VAA+S G+  G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALVDAVNVLMKRGDI--KRNPILGAVAAVSVGVYRGTPVLDLDYAE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
           DS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  + +
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLGLAEKGVRE 230


>gi|212712586|ref|ZP_03320714.1| hypothetical protein PROVALCAL_03681 [Providencia alcalifaciens DSM
           30120]
 gi|212684802|gb|EEB44330.1| hypothetical protein PROVALCAL_03681 [Providencia alcalifaciens DSM
           30120]
          Length = 237

 Score =  324 bits (832), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 116/239 (48%), Positives = 159/239 (66%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  +QMR I +TR  +K+AEGS L++FGDT +L  AT+EE VP +++    GWIT
Sbjct: 1   MRPAGRLADQMRPIKITRNYTKHAEGSVLIEFGDTKVLCNATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +REA  G+Q GR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATNSRNQREAAKGKQTGRTMEIQRLIARSLRAAVDLKKLGEYTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L +M       +    LK  VAA+S G++    + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALVDALNNMVAQGKLAK--SPLKSMVAAVSVGIVGQEGLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM + G ++EVQG+AE   FS +    +L LAK  +  + + Q++ + 
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLELLALAKTGLDTIFEAQREALK 237


>gi|332289145|ref|YP_004419997.1| ribonuclease PH [Gallibacterium anatis UMN179]
 gi|330432041|gb|AEC17100.1| ribonuclease PH [Gallibacterium anatis UMN179]
          Length = 239

 Score =  324 bits (831), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 123/241 (51%), Positives = 166/241 (68%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R  + MR I +TR  +K+AEGS L++FGDT +L  AT+EE VP +++    GWIT
Sbjct: 1   MRPNNRDNHAMRPIKITRHYTKHAEGSVLIEFGDTKVLCNATVEETVPRFLKGQNQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA  G+Q GR+ EIQR+IGR+LR++VDL+ LG R I +DCDVIQ
Sbjct: 61  AEYGMLPRATNVRTQREAAKGKQSGRTMEIQRLIGRSLRAMVDLTLLGERTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+G+ VALHD +Q + D          +K  VAA+S G++    + DL+Y 
Sbjct: 121 ADGGTRTAAISGSAVALHDAIQTLLD--KGLIKQNPIKNLVAAVSVGIVEQQQLCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMTD G ++EVQG+AE   FS D   A+L+LAK  IA + + QK  + +
Sbjct: 179 EDSNAETDMNVVMTDDGRMIEVQGTAEGEPFSHDELLALLDLAKQGIAQINQAQKAALQD 238

Query: 241 E 241
           +
Sbjct: 239 K 239


>gi|242237612|ref|YP_002985793.1| ribonuclease PH [Dickeya dadantii Ech703]
 gi|242129669|gb|ACS83971.1| ribonuclease PH [Dickeya dadantii Ech703]
          Length = 238

 Score =  324 bits (831), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q R I+LTR  +K+AEG+ LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPTGRSAQQTRPITLTRHYTKHAEGAVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ VDL+ LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNAREAARGKQGGRTLEIQRLIARSLRAAVDLAKLGEYTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D +  +       +    +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADAIAGLVASGKLAK--NPMKGMVAAVSVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VMT+ G ++EVQG+AE   FS +    +L LA+  I D+I+ QK  ++N
Sbjct: 179 EDSAAETDMNVVMTEDGRMIEVQGTAEGEPFSHEQLLELLALARGGIEDIIRAQKAALAN 238


>gi|190575702|ref|YP_001973547.1| ribonuclease PH [Stenotrophomonas maltophilia K279a]
 gi|226736944|sp|B2FT17|RNPH_STRMK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|190013624|emb|CAQ47259.1| putative ribonuclease PH [Stenotrophomonas maltophilia K279a]
          Length = 241

 Score =  324 bits (831), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 116/228 (50%), Positives = 157/228 (68%), Gaps = 2/228 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGRQ +Q+R + + R  +++AEGS LV FG+T +L TA++E +VP ++R    GW+TA
Sbjct: 5   RPSGRQPDQLRPVVIQRGFTRHAEGSVLVCFGETRVLCTASVENRVPGFLRGKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+QGGR+ EIQR+IGR+LR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRATHTRSDREAARGKQGGRTLEIQRLIGRSLRACVDRNALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +    +       + G VAA+S G+  G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALVDAVNVLMKRGDI--KRNPILGAVAAVSVGVYRGTPVLDLDYAE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
           DS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  + +
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLGLAEKGVGE 230


>gi|157783152|ref|YP_001491547.1| defective ribonuclease PH [Escherichia coli str. K-12 substr.
           MG1655]
 gi|298351814|sp|P0CG19|RNPH_ECOLI RecName: Full=Inactive ribonuclease PH; Short=RNase PH; AltName:
           Full=tRNA nucleotidyltransferase
 gi|290493|gb|AAA61996.1| RNase PH [Escherichia coli]
 gi|157672248|gb|ABV59576.1| defective ribonuclease PH [Escherichia coli str. K-12 substr.
           MG1655]
          Length = 228

 Score =  324 bits (831), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 119/213 (55%), Positives = 153/213 (71%), Gaps = 2/213 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWIT
Sbjct: 1   MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D LQ + +  N    +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALVDALQKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
           EDS  + D N VMT+ G I+EVQG+AE   F+ 
Sbjct: 179 EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTH 211


>gi|241762326|ref|ZP_04760406.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241373120|gb|EER62759.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 234

 Score =  324 bits (831), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 161/239 (67%), Gaps = 5/239 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R +S+    +++AEGSCL+ FGDT +L TA+LEE++P W+R    GW+T
Sbjct: 1   MRPSGRTPDQLRSLSIETGFTRHAEGSCLISFGDTRVLVTASLEERLPSWLRGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+Q GR+QEIQR+IGR+LR+ +DL  LG RQI IDCDV+Q
Sbjct: 61  AEYGMLPRSTHSRTNREAARGKQSGRTQEIQRLIGRSLRAGIDLKKLGERQITIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+G WVAL   +  +            +   VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASISGGWVALRLAVNKLLASGQL--TEDPIISQVAAVSCGISQGVPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST + DANFVM     ++EVQ SAE A + ++    +L LA+     +   QK  ++
Sbjct: 179 EDSTAEADANFVMMGDSRLIEVQASAEGAPYDEE---GLLRLARMGCQQIFAEQKKAVA 234


>gi|254460324|ref|ZP_05073740.1| ribonuclease PH [Rhodobacterales bacterium HTCC2083]
 gi|206676913|gb|EDZ41400.1| ribonuclease PH [Rhodobacteraceae bacterium HTCC2083]
          Length = 237

 Score =  324 bits (831), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 126/239 (52%), Positives = 171/239 (71%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  NQMR++S+   V+K+AEGSC++K GDTH+L TATLE +VP +I+ +  GW+T
Sbjct: 1   MRPSGRDLNQMRDVSIETNVTKHAEGSCMIKMGDTHVLCTATLENRVPPFIKGSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R++REA +G+QGGR+ EIQR+IGR+LR+ VD  ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRSTTSRMRREATAGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +         S  L   VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRCASITGGWVALKLAVNKLIKAGEI--TSDPLISPVAAISCGIYAGQPVLDLDYP 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD NF+M  +G ++E Q SAE +T+S+D    +++LA+  +++L  +Q    +
Sbjct: 179 EDSEAGVDGNFIMLANGQMIETQMSAEGSTYSRDQMNQLIDLAEKGVSELAAMQLAATA 237


>gi|157828824|ref|YP_001495066.1| ribonuclease PH [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933550|ref|YP_001650339.1| ribonuclease PH [Rickettsia rickettsii str. Iowa]
 gi|166228313|sp|A8GT33|RNPH_RICRS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043770|sp|B0BUM3|RNPH_RICRO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157801305|gb|ABV76558.1| ribonuclease PH [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908637|gb|ABY72933.1| ribonuclease PH [Rickettsia rickettsii str. Iowa]
          Length = 239

 Score =  324 bits (831), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 134/238 (56%), Positives = 170/238 (71%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ NQ+R ISL       AEGSCL+K G+TH++ +AT E  VP ++R    GWIT
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST  R+KREA  G+QGGR+QEIQR+IGRA+R V+D+  LG RQIIIDCDVI 
Sbjct: 61  AEYGMLPGSTSQRIKREAALGQQGGRTQEIQRLIGRAMRCVIDVRKLGERQIIIDCDVIN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VALH  ++ +     +      L   +AAISCG+  G  I+DLDY 
Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSLMK--KRVLKVNPLISQIAAISCGIYKGEVILDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  DVD+NFV   +G+++EVQG+AE+  FS++ F AML LAK   A+L KLQ  V+
Sbjct: 179 EDSDADVDSNFVFAGNGNLIEVQGTAEKNPFSEEQFLAMLKLAKGGAAELFKLQNQVL 236


>gi|257869443|ref|ZP_05649096.1| ribonuclease PH/Ham1 [Enterococcus gallinarum EG2]
 gi|257803607|gb|EEV32429.1| ribonuclease PH/Ham1 [Enterococcus gallinarum EG2]
          Length = 450

 Score =  324 bits (831), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 113/239 (47%), Positives = 157/239 (65%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+   +R + +   V K+ EGS ++ FGDT ++ +AT+E++VP ++R++  GW+T
Sbjct: 1   MRHDGRKAGSIRPVEIKTNVFKHPEGSVVISFGDTTVICSATIEDRVPPFLRDSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+I R+LR+VVDL  LG R I++DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   +  +   +N       +K H+AAIS G+L     + DLDY
Sbjct: 121 ADGGTRTASITGAFVALRLAIDQL--LTNHELTEDPIKEHLAAISVGILPDNTCVTDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS   VD N VMT+SG  +E+QG+ E ATF       ML   K  I +LI  QK+ +
Sbjct: 179 EEDSAAAVDMNLVMTESGRFIEIQGTGEEATFDGQQLNEMLIYGKTAIEELIAYQKEAL 237


>gi|254670670|emb|CBA06757.1| ribonuclease PH [Neisseria meningitidis alpha153]
 gi|261392252|emb|CAX49772.1| ribonuclease PH (RNase PH; tRNA nucleotidyltransferase) [Neisseria
           meningitidis 8013]
 gi|325204479|gb|ADY99932.1| ribonuclease PH [Neisseria meningitidis M01-240355]
          Length = 242

 Score =  324 bits (831), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 118/239 (49%), Positives = 172/239 (71%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+S R  + +R+I +T     +A+GSCL++ G+T ++ TA+++E VP ++R    GW+T
Sbjct: 5   IRIS-RAADSLRDIKITPHFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVT 63

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQ
Sbjct: 64  AEYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL   +  +   S+       ++  VAA+S G++ G P++DLDY 
Sbjct: 124 ADGGTRTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSVGVVNGVPLLDLDYP 181

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT SG I+E+QG+AE A FS D    ++ LA+  I +L++ Q++ +S
Sbjct: 182 EDSGCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALS 240


>gi|170749350|ref|YP_001755610.1| ribonuclease PH [Methylobacterium radiotolerans JCM 2831]
 gi|226736917|sp|B1M4N1|RNPH_METRJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|170655872|gb|ACB24927.1| ribonuclease PH [Methylobacterium radiotolerans JCM 2831]
          Length = 237

 Score =  324 bits (831), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 135/239 (56%), Positives = 172/239 (71%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R +SL R VS+YAEGSCLV FG+T +L TA+LEE+ P W+R +  GW+T
Sbjct: 1   MRPSKRAADELRPVSLERAVSRYAEGSCLVSFGNTRVLCTASLEERAPPWLRGSGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE  SG+  GR+QEIQR+IGR+LR+V +L A+G RQI IDCDVIQ
Sbjct: 61  AEYAMLPRATHERTRREVGSGKPSGRTQEIQRLIGRSLRAVTNLPAMGERQITIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVALHDC   M   +        L+ HVAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGAWVALHDCFAWMR--TRSIISVDPLRDHVAAVSCGLYKGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + DANFV+T  G IVEVQG+AE   F+Q+    +L LA+     L+ LQK+ I+
Sbjct: 179 EDSAAETDANFVLTGRGGIVEVQGTAEMEPFTQEQLLELLGLARAGTERLVALQKEAIA 237


>gi|269793131|ref|YP_003318035.1| ribonuclease PH [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100766|gb|ACZ19753.1| ribonuclease PH [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 248

 Score =  324 bits (831), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 117/238 (49%), Positives = 159/238 (66%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R + + R  ++YAEGS L+++G+TH+L TA++EEKVP ++R +  GW++A
Sbjct: 3   RIDGRSSGDLRPVRIERGCNRYAEGSALIRWGNTHVLCTASVEEKVPQFLRGSGRGWVSA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R +RE   G+   R QEIQR+IGR+LR+ VDLS LG R I IDCDV+QA
Sbjct: 63  EYAMLPRSTHQRTQREISRGKPNARGQEIQRLIGRSLRASVDLSLLGERTIWIDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAIT ++VAL D  + +   SN    S  +   VAA+S G++ G  ++DL Y E
Sbjct: 123 DGGTRTAAITASFVALVDACRWL--MSNGLVGSMPVVHQVAAVSAGIVAGEVMLDLCYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS+  VD N VM + G  VE+QG+ E A FS + F  ML+LA   I  L  LQ +V+ 
Sbjct: 181 DSSAQVDCNVVMAEDGRFVEIQGTGEDALFSMESFRDMLSLADVGIRRLHALQLEVLG 238


>gi|238764323|ref|ZP_04625274.1| Ribonuclease PH [Yersinia kristensenii ATCC 33638]
 gi|238697474|gb|EEP90240.1| Ribonuclease PH [Yersinia kristensenii ATCC 33638]
          Length = 238

 Score =  324 bits (831), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 120/240 (50%), Positives = 160/240 (66%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPAGRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +         +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNKLVAAGKL--KANPMKGLVAAVSVGIVKGEALCDLEYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +   A+L LA+  I  +   QK  +  
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLELARGGIETIFLAQKAALEQ 238


>gi|237748601|ref|ZP_04579081.1| ribonuclease PH [Oxalobacter formigenes OXCC13]
 gi|229379963|gb|EEO30054.1| ribonuclease PH [Oxalobacter formigenes OXCC13]
          Length = 247

 Score =  324 bits (831), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 121/239 (50%), Positives = 160/239 (66%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R +GR  + MR I   R  +KYAEGS L  FGDT ++ TA++EE VP ++R    GW+T
Sbjct: 7   IRANGRPLDSMRSIEFIRNYTKYAEGSVLTVFGDTKVICTASIEESVPPFLRGRGRGWLT 66

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  GRQ GR+QEIQR+IGR++R+  DL A G R + +DCDVIQ
Sbjct: 67  AEYGMLPRSTHTRMDREAARGRQSGRTQEIQRLIGRSIRAAFDLDAFGERTLKLDCDVIQ 126

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+G  +A +D    M +          L+  VAAIS G+  G P++DLDY 
Sbjct: 127 ADGGTRTASISGVMIAAYDAFSMMVE--EGLIDKVPLRHFVAAISVGVNQGVPLLDLDYQ 184

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST D D N VMT++G  VE+QG+AE   FS+     ML +A+  I++LI +QK V+ 
Sbjct: 185 EDSTCDTDMNVVMTEAGEFVEIQGTAEGGAFSRQTLNDMLGMAEKGISELIGMQKKVLG 243


>gi|332686498|ref|YP_004456272.1| ribonuclease PH [Melissococcus plutonius ATCC 35311]
 gi|332370507|dbj|BAK21463.1| ribonuclease PH [Melissococcus plutonius ATCC 35311]
          Length = 453

 Score =  324 bits (831), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 115/239 (48%), Positives = 161/239 (67%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR E Q+R I++   V KY EGS ++ FGDT ++ +AT+EEKVP ++++++ GW+T
Sbjct: 2   IRNDGRGEQQLRSITIETNVFKYPEGSVVISFGDTKVICSATIEEKVPFFLKDSEKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +R++  G+  GR+ EIQR+I R+LR+VVDL  L  + IIIDCDVIQ
Sbjct: 62  AEYSMLPRATQRRNRRDSNKGKLNGRATEIQRLISRSLRAVVDLEKLTGKSIIIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   ++ +            +K ++AA+S GML     I DL+Y
Sbjct: 122 ADGGTRTASITGAFVALKLAVEKL--LQQGLLTENPIKEYLAAVSVGMLSNDNCITDLNY 179

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED+   VD N VMT++G+ VE+QG+ E ATFS +    ML   K  I +LI +QK  I
Sbjct: 180 EEDTAAKVDMNLVMTETGNFVEIQGTGEEATFSGEELNTMLFYGKQAIEELISIQKQAI 238


>gi|291166728|gb|EFE28774.1| ribonuclease PH/Ham1 protein [Filifactor alocis ATCC 35896]
          Length = 471

 Score =  323 bits (830), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 106/233 (45%), Positives = 158/233 (67%), Gaps = 2/233 (0%)

Query: 10  QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
           Q+R+I++   ++KYAEGS LV FGDT ++ TA++EEKVP +++ T  GW++AEY MLPRS
Sbjct: 6   QLRDINIETGINKYAEGSVLVSFGDTRVICTASVEEKVPAFLKGTGKGWVSAEYAMLPRS 65

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
           T  R KR++  G+  GR QEIQR+IGR+LR+ +D   LG R I IDCDVIQADGGTRTA+
Sbjct: 66  TEQRKKRDSSRGKVDGRGQEIQRLIGRSLRNAIDFDLLGERTIWIDCDVIQADGGTRTAS 125

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           I+G++VA+    + + D   K      +  +++A+S G++ G  I+DL+Y  DS  DVD 
Sbjct: 126 ISGSFVAMAIACKQLYD--KKMIEEFPISHYISAVSVGIVNGKNILDLNYEFDSKADVDL 183

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           N VM ++   VE+QG+AE   F +    ++L LA+    ++I+LQK  +  ++
Sbjct: 184 NVVMNENLEYVELQGTAEGVAFRRQQLDSLLTLAEIGCKEIIELQKTALGKQI 236


>gi|313619283|gb|EFR91024.1| ribonuclease PH [Listeria innocua FSL S4-378]
 gi|313624060|gb|EFR94144.1| ribonuclease PH [Listeria innocua FSL J1-023]
          Length = 248

 Score =  323 bits (830), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 164/243 (67%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR++N +REI +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 1   MRFDGREKNALREIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA++A+   +  +++     +    +K  +AA S G+L  G  ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEEVPFTKF--PVKDFLAATSVGVLEEGGTVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N +MT SG  VE+QG+ E ATFS+     ++ L K  I++LI++QK+ + 
Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGISELIEIQKETLG 238

Query: 240 NEV 242
           +++
Sbjct: 239 DKI 241


>gi|294101305|ref|YP_003553163.1| ribonuclease PH [Aminobacterium colombiense DSM 12261]
 gi|293616285|gb|ADE56439.1| ribonuclease PH [Aminobacterium colombiense DSM 12261]
          Length = 260

 Score =  323 bits (830), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 115/238 (48%), Positives = 160/238 (67%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ N++R IS  R  + YAEG+ L  FGDT ++ TA++E++VP ++R +  GWI+
Sbjct: 6   LRSDGRKFNEIRPISFQRHFTCYAEGAVLACFGDTKVICTASVEDRVPPFLRGSGQGWIS 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  R    G   GRS EIQR+IGR+LR+  DLS LG R I +DCDVIQ
Sbjct: 66  AEYAMLPRATAERTSRMTSKGAISGRSHEIQRLIGRSLRASADLSLLGERTIWLDCDVIQ 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+GA+VAL D ++ ++  +        +K  VAA+S G + G  ++DL Y 
Sbjct: 126 ADGGTRTAAISGAFVALFDAMRCLK--AQDVIEKIPVKSFVAAVSVGKIEGSLLLDLCYE 183

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  DVD N VM     ++E+QG+ ER TF++D F AML+LA+D I  ++  Q +V+
Sbjct: 184 EDSCADVDCNVVMNGDKQLIEIQGTGERGTFARDEFDAMLDLAEDGIQTIMFSQAEVL 241


>gi|116872609|ref|YP_849390.1| ribonuclease PH [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|123463713|sp|A0AHX9|RNPH_LISW6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|116741487|emb|CAK20611.1| ribonuclease PH [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 248

 Score =  323 bits (830), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 111/243 (45%), Positives = 165/243 (67%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR++N +R+I +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 1   MRVDGREKNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA++A+   +  +++          +K  +AA S G+L  G  ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDE--QVPFTKFPVKDFLAATSVGVLEEGGTVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N +MT SG  VE+QG+ E ATFS+     ++ L K  I++LI++QK+++ 
Sbjct: 179 IEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKEILG 238

Query: 240 NEV 242
           +++
Sbjct: 239 DKI 241


>gi|256396655|ref|YP_003118219.1| ribonuclease PH [Catenulispora acidiphila DSM 44928]
 gi|256362881|gb|ACU76378.1| ribonuclease PH [Catenulispora acidiphila DSM 44928]
          Length = 243

 Score =  323 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 158/239 (66%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+  Q+R ++LTR+ S + EGS LV+FG T +L TA++ E VP W+R +  GW+TA
Sbjct: 5   RVDGRKVGQLRPVTLTRKWSIHPEGSVLVEFGQTKVLCTASVTEGVPRWLRGSGKGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+QEI R+IGRALR+VVD  ALG   II+DCDV+QA
Sbjct: 65  EYAMLPRATNTRGDRESVKGKVGGRTQEISRLIGRALRAVVDTKALGENTIIVDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  M D        + L G V+A+S G++ G P++DL Y E
Sbjct: 125 DGGTRTAAITGAYVALQDAVTWMRDKKMIKASREPLAGSVSAVSVGIIDGVPMLDLCYEE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   + D N V T  G  VEVQG+AE A F +    A+L+LA     +L   Q   + +
Sbjct: 185 DVRAETDMNVVCTADGKFVEVQGTAEGAPFDRAELDALLDLAAAGCRELASHQVKALLS 243


>gi|332981492|ref|YP_004462933.1| ribonuclease PH [Mahella australiensis 50-1 BON]
 gi|332699170|gb|AEE96111.1| ribonuclease PH [Mahella australiensis 50-1 BON]
          Length = 247

 Score =  323 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 116/240 (48%), Positives = 157/240 (65%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +Q+R ++LTR   K+ +GS L++ G+T ++ TA +E+KVP +++ T  GWIT
Sbjct: 1   MRAYHRGFDQLRPVTLTRDYLKHPDGSVLIEAGETKIICTAMIEDKVPPFLKGTGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           +EYGMLP ST  R  RE+  G   GR+QEIQR+IGR LRSVVD+SALG R I IDCDVIQ
Sbjct: 61  SEYGMLPGSTQARKIRESTRGHIEGRTQEIQRIIGRTLRSVVDISALGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG++VAL   +  + +   K      +   VAA+S G++ G  ++DL Y 
Sbjct: 121 ADGGTRTASITGSFVALAIAINKLFE--KKKIERFPISNLVAAVSVGIVDGQIMLDLCYD 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED+   VD N  MTD G  VEVQG+ E A FS+     ++NLA   I +L+ LQ D +  
Sbjct: 179 EDARAQVDMNIAMTDDGRFVEVQGTGEAAPFSRRQMDELINLADKGIQELMALQIDCLGE 238


>gi|297625967|ref|YP_003687730.1| ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921732|emb|CBL56290.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 253

 Score =  323 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 115/238 (48%), Positives = 160/238 (67%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R +S+TR    +AEGSCL++ G T +L  A++ E VP W R +  GW+T+
Sbjct: 10  RSDGRSLDQLRPVSITRHWLDHAEGSCLIEAGRTRVLVAASVTEGVPRWRRGSGLGWVTS 69

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+  GR+ EI R+IGR+LR+V+D  ALG   I++D DV+QA
Sbjct: 70  EYEMLPRATNTRNDRESRRGKISGRTHEISRLIGRSLRAVIDYKALGENTIVVDADVLQA 129

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VALHD ++ + +  +     + L G V+AIS G++ G P++DL Y E
Sbjct: 130 DGGTRTASITGAYVALHDAVEWLRERGSL--AGEPLTGSVSAISVGIVKGVPMLDLAYDE 187

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DST DVD N V T +G  VEVQG+AE ATF +     +L+LA     +L  LQ+ VI+
Sbjct: 188 DSTADVDMNIVATGTGDFVEVQGTAEGATFDRKLLGRLLDLADKGNRELTDLQQRVIA 245


>gi|160872895|ref|ZP_02063027.1| ribonuclease PH [Rickettsiella grylli]
 gi|159121694|gb|EDP47032.1| ribonuclease PH [Rickettsiella grylli]
          Length = 237

 Score =  323 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 119/240 (49%), Positives = 155/240 (64%), Gaps = 4/240 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +++R I+L R  + YAEGS  V FG T +L TA++   VP +++ + HGWIT
Sbjct: 1   MRASQRALDELRAITLIRSYTNYAEGSVWVAFGQTKVLCTASIIPGVPKFLKGSNHGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GRS EIQR+IGR LR  VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRSDREASRGKQTGRSLEIQRLIGRVLRMSVDLKQLGENTIFLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D L  M+               VAA+S G+  G  ++DLDY 
Sbjct: 121 ADGGTRTAAITGASVALKDALATMK----GEMKYNPWCFLVAAVSVGIYKGQALLDLDYE 176

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  ++D N +MT+ G ++E+Q +AE+A FS+     +LNLA+  I   +K QK+V+  
Sbjct: 177 EDSHAEMDMNVIMTEQGKLLEIQATAEKAAFSKQQLNQLLNLAETGIKQCVKKQKEVLGE 236


>gi|31792536|ref|NP_855029.1| ribonuclease PH [Mycobacterium bovis AF2122/97]
 gi|59798839|sp|Q7U076|RNPH_MYCBO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|31618125|emb|CAD94236.1| PROBABLE RIBONUCLEASE RPHA (RNase PH) (tRNA nucleotidyltransferase)
           [Mycobacterium bovis AF2122/97]
          Length = 259

 Score =  323 bits (829), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 109/238 (45%), Positives = 157/238 (65%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  ++   GS L++FG T +L TA++ E VP W + T  GW+TA
Sbjct: 4   REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R  RE+V GR  GR+QEI R+I R+LR+ +DL+ALG   I IDCDV+QA
Sbjct: 64  EYAMLPSATHSRSDRESVRGRLSGRTQEISRLISRSLRACIDLAALGENTIAIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVTYL-SAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VE+QG+ E ATF++     +L++A      L   Q+D ++
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240


>gi|16800270|ref|NP_470538.1| ribonuclease PH [Listeria innocua Clip11262]
 gi|21759406|sp|Q92CH1|RNPH_LISIN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|16413660|emb|CAC96432.1| lin1201 [Listeria innocua Clip11262]
          Length = 248

 Score =  323 bits (829), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 164/243 (67%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR++N +REI +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 1   MRFDGREKNALREIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA++A+   +  +++     +    +K  +AA S G+L  G  ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEEVPFTKF--PVKDFLAATSVGVLEEGGTVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N +MT SG  VE+QG+ E ATFS+     ++ L K  I++LI++QK+ + 
Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLG 238

Query: 240 NEV 242
           +++
Sbjct: 239 DKI 241


>gi|298253316|ref|ZP_06977108.1| ribonuclease PH [Gardnerella vaginalis 5-1]
 gi|297532711|gb|EFH71597.1| ribonuclease PH [Gardnerella vaginalis 5-1]
          Length = 247

 Score =  323 bits (829), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 105/229 (45%), Positives = 151/229 (65%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR  +++R + +TR+ +   EGS L++ G+T ++ TAT    VP W R++  GW+T
Sbjct: 8   IRVDGRDVDELRPVHITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRRDSGLGWVT 67

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR VVD+ A+G  QI IDCDV+Q
Sbjct: 68  AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQIDCDVLQ 127

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA+VAL D L   E   +    + V+K  ++A+S G++ G P++DL Y 
Sbjct: 128 ADGGTRTASVTGAYVALVDALHWAEKNGHIRSAANVIKDSISAVSVGVINGTPMLDLPYV 187

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
           EDS    D N  MT SG  +E+QG+AE   F++D    +L+LA     +
Sbjct: 188 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRDELNTLLDLATKGNHE 236


>gi|257866170|ref|ZP_05645823.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC30]
 gi|257872500|ref|ZP_05652153.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC10]
 gi|257800104|gb|EEV29156.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC30]
 gi|257806664|gb|EEV35486.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC10]
          Length = 450

 Score =  323 bits (829), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 116/239 (48%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+E  +R + +   V K+ EGS ++ FGDT ++ +AT+E++VP ++R+T  GW+T
Sbjct: 1   MRHDGRKETMLRPVKIQTNVYKHPEGSVVISFGDTTVICSATIEDRVPPFLRDTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+I R+LR+VVDL  LG R I++DCDV+Q
Sbjct: 61  AEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDCDVVQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   +  +    +K      +K H+AAIS G+L  G  + DLDY
Sbjct: 121 ADGGTRTASITGAFVALRLAIDTL--LRDKALTEDPIKEHLAAISVGILPDGTCVTDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS+  VD N VMT+SG  VE+QG+ E ATF       ML   K  I +LI  QK+ +
Sbjct: 179 QEDSSAAVDMNLVMTESGRFVELQGTGEEATFDGQQLNEMLIYGKTAIEELIAYQKEAL 237


>gi|319637683|ref|ZP_07992449.1| ribonuclease PH [Neisseria mucosa C102]
 gi|317400838|gb|EFV81493.1| ribonuclease PH [Neisseria mucosa C102]
          Length = 242

 Score =  323 bits (829), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 116/237 (48%), Positives = 168/237 (70%), Gaps = 2/237 (0%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
           GR  + +R I +T     +A+GSCL++ G+T ++ TA+++E VP ++R  + GW+TAEYG
Sbjct: 8   GRAADSLRNIKITPNFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKEQGWVTAEYG 67

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           MLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADGG
Sbjct: 68  MLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG 127

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
           TRTA+ITGA+VAL   +  +   S+       ++  VAA+S G++ G P++DLDY EDS 
Sbjct: 128 TRTASITGAYVALQIAVDKL--LSDGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDSG 185

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
            D D N +MT SG I+E+QG+AE A FS +    ++ LA   IA+L++ QK  + + 
Sbjct: 186 CDSDVNIIMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQKAALLSR 242


>gi|73748973|ref|YP_308212.1| ribonuclease PH [Dehalococcoides sp. CBDB1]
 gi|147669740|ref|YP_001214558.1| ribonuclease PH [Dehalococcoides sp. BAV1]
 gi|289432969|ref|YP_003462842.1| ribonuclease PH [Dehalococcoides sp. GT]
 gi|123619918|sp|Q3ZYH8|RNPH_DEHSC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043760|sp|A5FQ49|RNPH_DEHSB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|73660689|emb|CAI83296.1| ribonuclease PH [Dehalococcoides sp. CBDB1]
 gi|146270688|gb|ABQ17680.1| RNAse PH [Dehalococcoides sp. BAV1]
 gi|288946689|gb|ADC74386.1| ribonuclease PH [Dehalococcoides sp. GT]
          Length = 241

 Score =  323 bits (829), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 107/234 (45%), Positives = 151/234 (64%), Gaps = 2/234 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R I++T     +AEGS L++ G T ++ + ++E++VP ++RN+  GW+TA
Sbjct: 3   RGDGRNFNQLRPITITPGFQSFAEGSVLIEQGKTRVICSVSMEDRVPQFLRNSGTGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R +R++ +G+  GRSQEIQR+IGR+LRS VD++ALG R  I+DCDVIQA
Sbjct: 63  EYSMLPRSTVTRTQRDSSAGKISGRSQEIQRLIGRSLRSCVDMAALGERSFIVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTA+ITG+++AL+   + M D              VAA+S  +  G  ++D  Y E
Sbjct: 123 DAGTRTASITGSYIALYLAFKKMVDMG--ILSKMPFTSQVAAVSVSIFKGNIVLDPCYDE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D   +VD N VM D G  VE+QG+AE   FS+D    +L L +  I  L  +QK
Sbjct: 181 DFQAEVDFNLVMNDRGEFVEIQGTAEGKAFSRDTLDQVLKLGEAGIRQLFDIQK 234


>gi|325499450|gb|EGC97309.1| ribonuclease PH [Escherichia fergusonii ECD227]
          Length = 228

 Score =  323 bits (829), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 120/230 (52%), Positives = 159/230 (69%), Gaps = 2/230 (0%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           MR ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWITAEYGMLPRST
Sbjct: 1   MRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRST 60

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
             R  REA  G+QGGR+ EIQR+I RALR+ VDL ALG   I +DCDV+QADGGTRTA+I
Sbjct: 61  HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASI 120

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
           TGA VAL D L  + +  N    +  +KG VAA+S G++ G  + DL+Y EDS  + D N
Sbjct: 121 TGACVALADALNKLVE--NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMN 178

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            VMT+ G I+EVQG+AE   F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 179 VVMTEDGRIIEVQGTAEGEPFTHEELLTLLALARGGIESIVATQKAALAN 228


>gi|146328830|ref|YP_001209573.1| ribonuclease PH [Dichelobacter nodosus VCS1703A]
 gi|166228278|sp|A5EV74|RNPH_DICNV RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|146232300|gb|ABQ13278.1| ribonuclease PH [Dichelobacter nodosus VCS1703A]
          Length = 238

 Score =  323 bits (829), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 116/239 (48%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +QMRE+ + R V+ +AEGS L+  G T +L TA++EE+VP ++R    GW+T
Sbjct: 1   MRPHHRLPDQMRELHIERAVNCHAEGSALITLGRTQVLCTASIEERVPPFLRGQNQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVDLSALG R I +DCDV+Q
Sbjct: 61  AEYGMLPRATHERSTREAARGKQQGRTQEIQRLIGRSLRAVVDLSALGERSITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+G ++AL D ++ +         +  L+G +AA+S G   G  ++DL+Y 
Sbjct: 121 ADGGTRTAAISGGFIALADAIRVLMQQGRL--KANPLRGQLAAVSVGFYQGEALLDLEYC 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D N VM D+G ++E+QG+AE   FS+    A+L+LA+  I++++  Q+ V+ 
Sbjct: 179 EDSAAETDMNIVMNDAGALIEIQGTAEGRAFSRQEMNALLDLAEKGISEIMAEQRRVLG 237


>gi|310643658|ref|YP_003948416.1| ribonuclease ph:ham1-like protein [Paenibacillus polymyxa SC2]
 gi|309248608|gb|ADO58175.1| Ribonuclease PH:Ham1-like protein [Paenibacillus polymyxa SC2]
          Length = 253

 Score =  323 bits (828), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 108/238 (45%), Positives = 158/238 (66%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R +GR  +++R + LT  V+KYAEGS  ++ G+T ++ TAT+EE+VP +++    GW+TA
Sbjct: 3   RSNGRNGDELRPMKLTAGVNKYAEGSVFIEVGETKVICTATVEERVPPFMKGQGKGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T +R +REA  G+  GR+ EIQR+IGRALRSVV+L ALG R I +DCDVIQA
Sbjct: 63  EYSMLPRATHSRNQREAARGKLTGRTMEIQRLIGRALRSVVNLQALGERTITLDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRT +ITG++VAL   +  +            +   +A++S G++    ++DL+Y E
Sbjct: 123 DGGTRTTSITGSFVALAIAVNKIAIQHKLPVF--PITDFLASVSVGVVGDKALLDLNYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS   VD N VMT SG  VE+QG+ E + F +     +L+L +  I  +I+ QK+V+ 
Sbjct: 181 DSKAKVDMNLVMTGSGKYVELQGTGEESPFDRQELDQLLSLGEQGILQMIERQKEVLG 238


>gi|315302796|ref|ZP_07873561.1| ribonuclease PH [Listeria ivanovii FSL F6-596]
 gi|313628833|gb|EFR97201.1| ribonuclease PH [Listeria ivanovii FSL F6-596]
          Length = 248

 Score =  323 bits (828), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 113/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ N +R+I +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 1   MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA++A+   +  ++  +        +K  +AA S G+L  G  ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLD--AEVPFTKFPVKDFLAATSVGVLEEGGTVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N +MT SG  VE+QG+ E ATFS+     ++ L K  IA+LI++QK+ + 
Sbjct: 179 IEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGIAELIEIQKETLG 238

Query: 240 NEV 242
            +V
Sbjct: 239 EKV 241


>gi|22124017|ref|NP_667440.1| ribonuclease PH [Yersinia pestis KIM 10]
 gi|45439910|ref|NP_991449.1| ribonuclease PH [Yersinia pestis biovar Microtus str. 91001]
 gi|51594399|ref|YP_068590.1| ribonuclease PH [Yersinia pseudotuberculosis IP 32953]
 gi|108809489|ref|YP_653405.1| ribonuclease PH [Yersinia pestis Antiqua]
 gi|108813966|ref|YP_649733.1| ribonuclease PH [Yersinia pestis Nepal516]
 gi|145601101|ref|YP_001165177.1| ribonuclease PH [Yersinia pestis Pestoides F]
 gi|150260892|ref|ZP_01917620.1| ribonuclease PH [Yersinia pestis CA88-4125]
 gi|153946899|ref|YP_001399057.1| ribonuclease PH [Yersinia pseudotuberculosis IP 31758]
 gi|162421592|ref|YP_001604689.1| ribonuclease PH [Yersinia pestis Angola]
 gi|165926075|ref|ZP_02221907.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165936276|ref|ZP_02224845.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011471|ref|ZP_02232369.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213648|ref|ZP_02239683.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167402127|ref|ZP_02307604.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167419312|ref|ZP_02311065.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426642|ref|ZP_02318395.1| ribonuclease PH [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167468220|ref|ZP_02332924.1| ribonuclease PH [Yersinia pestis FV-1]
 gi|170026367|ref|YP_001722872.1| ribonuclease PH [Yersinia pseudotuberculosis YPIII]
 gi|186893387|ref|YP_001870499.1| ribonuclease PH [Yersinia pseudotuberculosis PB1/+]
 gi|218927265|ref|YP_002345140.1| ribonuclease PH [Yersinia pestis CO92]
 gi|229836156|ref|ZP_04456324.1| ribonuclease PH [Yersinia pestis Pestoides A]
 gi|229839893|ref|ZP_04460052.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229841975|ref|ZP_04462130.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. India 195]
 gi|229904496|ref|ZP_04519607.1| ribonuclease PH [Yersinia pestis Nepal516]
 gi|270488496|ref|ZP_06205570.1| tRNA nucleotidyltransferase [Yersinia pestis KIM D27]
 gi|294502151|ref|YP_003566213.1| ribonuclease PH [Yersinia pestis Z176003]
 gi|21759404|sp|Q8ZJP8|RNPH_YERPE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61215882|sp|Q66GE1|RNPH_YERPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|122382629|sp|Q1C262|RNPH_YERPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|122384026|sp|Q1CCZ7|RNPH_YERPN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228325|sp|A4TSE2|RNPH_YERPP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166991087|sp|A7FCS9|RNPH_YERP3 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736955|sp|B2JYM8|RNPH_YERPB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736956|sp|A9R668|RNPH_YERPG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736957|sp|B1JQX8|RNPH_YERPY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|21956760|gb|AAM83691.1|AE013610_3 RNase PH [Yersinia pestis KIM 10]
 gi|45434765|gb|AAS60326.1| ribonuclease PH [Yersinia pestis biovar Microtus str. 91001]
 gi|51587681|emb|CAH19281.1| ribonuclease PH [Yersinia pseudotuberculosis IP 32953]
 gi|108777614|gb|ABG20133.1| RNAse PH [Yersinia pestis Nepal516]
 gi|108781402|gb|ABG15460.1| RNAse PH [Yersinia pestis Antiqua]
 gi|115345876|emb|CAL18734.1| ribonuclease PH [Yersinia pestis CO92]
 gi|145212797|gb|ABP42204.1| RNAse PH [Yersinia pestis Pestoides F]
 gi|149290300|gb|EDM40377.1| ribonuclease PH [Yersinia pestis CA88-4125]
 gi|152958394|gb|ABS45855.1| ribonuclease PH [Yersinia pseudotuberculosis IP 31758]
 gi|162354407|gb|ABX88355.1| ribonuclease PH [Yersinia pestis Angola]
 gi|165915890|gb|EDR34498.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921935|gb|EDR39112.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989617|gb|EDR41918.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205050|gb|EDR49530.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166963306|gb|EDR59327.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048502|gb|EDR59910.1| ribonuclease PH [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167054331|gb|EDR64148.1| ribonuclease PH [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|169752901|gb|ACA70419.1| ribonuclease PH [Yersinia pseudotuberculosis YPIII]
 gi|186696413|gb|ACC87042.1| ribonuclease PH [Yersinia pseudotuberculosis PB1/+]
 gi|229678614|gb|EEO74719.1| ribonuclease PH [Yersinia pestis Nepal516]
 gi|229690285|gb|EEO82339.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. India 195]
 gi|229696259|gb|EEO86306.1| ribonuclease PH [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706604|gb|EEO92610.1| ribonuclease PH [Yersinia pestis Pestoides A]
 gi|262360230|gb|ACY56951.1| ribonuclease PH [Yersinia pestis D106004]
 gi|262364176|gb|ACY60733.1| ribonuclease PH [Yersinia pestis D182038]
 gi|270337000|gb|EFA47777.1| tRNA nucleotidyltransferase [Yersinia pestis KIM D27]
 gi|294352610|gb|ADE62951.1| ribonuclease PH [Yersinia pestis Z176003]
 gi|320013398|gb|ADV96969.1| ribonuclease PH [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 238

 Score =  323 bits (828), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 119/240 (49%), Positives = 162/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +         +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNKLVASGKL--KANPMKGLVAAVSVGIVKGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +   A+L+LA+  I  + + QK  + +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLDLARGGIETIFQAQKAALES 238


>gi|299535538|ref|ZP_07048859.1| ribonuclease PH [Lysinibacillus fusiformis ZC1]
 gi|298728738|gb|EFI69292.1| ribonuclease PH [Lysinibacillus fusiformis ZC1]
          Length = 249

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 109/240 (45%), Positives = 151/240 (62%), Gaps = 3/240 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  + +R + +      + EGS L++ G+T ++ TAT+E+KVP ++R    GWITA
Sbjct: 3   RFDGRNADGLRPVKIDSEYLLHPEGSVLIQVGNTKVICTATIEDKVPGFLRGQGKGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R + IDCDVIQA
Sbjct: 63  EYSMLPRATAQRTPRESSRGKVNGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYG 180
           DGGTRTA+ITGA+VA+   +    +   K      +   +AA S G++     I+DL+Y 
Sbjct: 123 DGGTRTASITGAFVAMTQAIAKFAE--EKPFEKFPVTDFLAATSVGIVEEQGAILDLNYV 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED    VD N VMT +G  VE+QG+ E ATFS++    +L L +  I  L++LQK  +  
Sbjct: 181 EDVAAAVDMNIVMTGAGRFVELQGTGEEATFSREELNELLALGEKGIQQLVELQKITLGE 240


>gi|157826032|ref|YP_001493752.1| ribonuclease PH [Rickettsia akari str. Hartford]
 gi|166228310|sp|A8GPB9|RNPH_RICAH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157799990|gb|ABV75244.1| ribonuclease PH [Rickettsia akari str. Hartford]
          Length = 239

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 127/238 (53%), Positives = 168/238 (70%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ NQ+R ISL        EGSC++K G+TH++ +AT E  VP ++R    GW+T
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINTEGSCIIKIGNTHVMCSATCETTVPPFLRGQNQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST  R+KREA  G+QGGR+QEIQR+IGR++R V+DL  LG RQIIIDCDVI 
Sbjct: 61  AEYGMLPGSTSQRIKREAAQGKQGGRTQEIQRLIGRSMRCVMDLKKLGERQIIIDCDVIN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG++VALH  ++ +     +      L   +AA+SCG+  G  I+DLDY 
Sbjct: 121 ADGGTRTASITGSYVALHLAIRSLMK--KRILKVNPLISQIAAVSCGIYKGEAILDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  +VD+NFV   +G+++EVQG+AE+  FS++ F  ML LAK   A+L KLQ  V+
Sbjct: 179 EDSDAEVDSNFVFAGNGNLIEVQGTAEQEPFSEEQFIEMLKLAKCGAAELFKLQNQVL 236


>gi|308070476|ref|YP_003872081.1| tRNA nucleotidyltransferase [Paenibacillus polymyxa E681]
 gi|305859755|gb|ADM71543.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Paenibacillus polymyxa E681]
          Length = 253

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 108/238 (45%), Positives = 160/238 (67%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R +GR  +++R + LT  V+KYAEGS  ++ G+T ++ TAT+EE+VP +++    GW+TA
Sbjct: 3   RSNGRNGDELRPMKLTAGVNKYAEGSVFIEVGETKVICTATVEERVPPFMKGQGKGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T +R +REA  G+  GR+ EIQR+IGRALRSVV+L ALG R I +DCDVIQA
Sbjct: 63  EYSMLPRATHSRNQREAARGKLTGRTMEIQRLIGRALRSVVNLQALGERTITLDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRT +ITG++VAL   +  +   +        +   +A++S G++    ++DL+Y E
Sbjct: 123 DGGTRTTSITGSFVALAIAVNKI--ATQHKLPVFPITDFLASVSVGVVGEKALLDLNYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS   VD N VMT SG  VE+QG+ E + F ++    +L+L +  I  +I+ QK+V+ 
Sbjct: 181 DSKAKVDMNLVMTGSGKYVELQGTGEESPFDRNELDQLLSLGEQGILQMIERQKEVLG 238


>gi|254852893|ref|ZP_05242241.1| ribonuclease PH [Listeria monocytogenes FSL R2-503]
 gi|254993151|ref|ZP_05275341.1| ribonuclease PH [Listeria monocytogenes FSL J2-064]
 gi|300764387|ref|ZP_07074381.1| ribonuclease PH [Listeria monocytogenes FSL N1-017]
 gi|258606228|gb|EEW18836.1| ribonuclease PH [Listeria monocytogenes FSL R2-503]
 gi|300515039|gb|EFK42092.1| ribonuclease PH [Listeria monocytogenes FSL N1-017]
          Length = 248

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 112/243 (46%), Positives = 163/243 (67%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ N +R I +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 1   MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA++A+   +  +++     +    +K  +AA S G+L  G  ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVPFAKF--PVKDFLAATSVGVLEEGGTVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N +MT SG  VE+QG+ E ATFS+     ++ L K  I++LI++QK+ + 
Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIVLGKKGISELIEIQKETLG 238

Query: 240 NEV 242
           ++V
Sbjct: 239 DKV 241


>gi|57233914|ref|YP_182001.1| ribonuclease PH [Dehalococcoides ethenogenes 195]
 gi|123618391|sp|Q3Z6Z8|RNPH_DEHE1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|57224362|gb|AAW39419.1| ribonuclease PH [Dehalococcoides ethenogenes 195]
          Length = 239

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 110/233 (47%), Positives = 150/233 (64%), Gaps = 2/233 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R I++T     +AEGS L++ G T ++ + ++E+KVP ++RN+  GW+TA
Sbjct: 3   RGDGRNFNQLRPITITPGFQSFAEGSVLIEQGKTRVICSVSMEDKVPQFLRNSGTGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R +R++ +G+  GRSQEIQR+IGR+LRS VDL+ALG R  IIDCDVIQA
Sbjct: 63  EYSMLPRSTVTRTQRDSSAGKISGRSQEIQRLIGRSLRSCVDLAALGERSFIIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTA+ITGA++AL+   + M D              VAA+S  +  G  ++D  Y E
Sbjct: 123 DAGTRTASITGAYIALYLAFKKMVDMG--ILSKMPFTSQVAAVSVSIFKGNIVLDPCYDE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D   +VD N VM D    VE+QG+AE  TFS+D    +L L +  I  L  +Q
Sbjct: 181 DFQAEVDFNLVMNDRAEFVEIQGTAEGKTFSRDTLDQVLKLGEAGIWQLFDIQ 233


>gi|254421303|ref|ZP_05035021.1| ribonuclease PH [Synechococcus sp. PCC 7335]
 gi|196188792|gb|EDX83756.1| ribonuclease PH [Synechococcus sp. PCC 7335]
          Length = 241

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 104/241 (43%), Positives = 155/241 (64%), Gaps = 4/241 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   RQ +Q+R     R+ ++Y+ GS L   G+T +L TA++ E VP +++++  GW+TA
Sbjct: 5   RPDQRQPDQLRPFKFERQFTQYSAGSVLAHCGNTRVLCTASVLEGVPRFLKDSGQGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R  RE +  +  GR+QEIQR+IGR+LR+ +D+ ALG R I ID DV+QA
Sbjct: 65  EYRMLPGSTQTRKSREFM--KLSGRTQEIQRLIGRSLRAALDMEALGERTITIDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRT +ITGA+VAL D + H+   +     +  L+  +AA S G++ G P +DL+Y E
Sbjct: 123 DGGTRTTSITGAYVALEDAIAHLIKTNEL--TTSPLRHQIAATSVGLIEGDPFLDLNYPE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D   D+D N VM +    +EVQG+AE  +F++    AML  A+  I+ L+++QK  +S  
Sbjct: 181 DFAADIDFNVVMNEKLEFIEVQGTAEAGSFTRSQLNAMLEYAEKGISQLMQIQKATLSES 240

Query: 242 V 242
           +
Sbjct: 241 L 241


>gi|139438503|ref|ZP_01772019.1| Hypothetical protein COLAER_01011 [Collinsella aerofaciens ATCC
           25986]
 gi|133776042|gb|EBA39862.1| Hypothetical protein COLAER_01011 [Collinsella aerofaciens ATCC
           25986]
          Length = 241

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 124/238 (52%), Positives = 166/238 (69%), Gaps = 4/238 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R +GR  N++R + LTR V K+A GSCL +FGDT +L  AT+EE VP W +  K GW+TA
Sbjct: 8   RANGRAANELRPVKLTRGVMKHAHGSCLAEFGDTRVLCAATIEEGVPGWRKGAKAGWVTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP STG R KRE  + +  GRS EI+R+IGR+LR+VV++ ALG   + +DCDVIQA
Sbjct: 68  EYAMLPASTGKRCKREYANRK--GRSMEIERLIGRSLRTVVNMKALGEYTVTVDCDVIQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGAWVALHD L    +     ++   L G VAAIS G++ G  ++DLDY E
Sbjct: 126 DGGTRTASITGAWVALHDALAMWVEAGKIERI--PLTGQVAAISMGVVDGNTMLDLDYSE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G I+E+QG+ E+A F +    A+L+L    IA+LI+LQ+  ++
Sbjct: 184 DSHAEVDMNLVATDTGEIIELQGTGEQAPFDRKRLNALLDLGDKGIAELIELQRQALA 241


>gi|269128062|ref|YP_003301432.1| ribonuclease PH [Thermomonospora curvata DSM 43183]
 gi|268313020|gb|ACY99394.1| ribonuclease PH [Thermomonospora curvata DSM 43183]
          Length = 239

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 109/238 (45%), Positives = 153/238 (64%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R  +Q+R + + R    +AEGS L++FG T +L  A++++ VP W R++  GW+TA
Sbjct: 3   RPDDRAPDQLRPVRIQRNWLDHAEGSVLIEFGATRVLCAASVQDSVPRWRRDSGLGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R +RE+V GR GGR+QEI R+IGR+LR+ VD   LG   +++DCDV+QA
Sbjct: 63  EYAMLPRATHTRGERESVKGRLGGRTQEISRLIGRSLRACVDFKELGENTVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  M +   +      L   VAA+S G++ G P +DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAWMRE--RELIKGDPLICSVAAVSVGVVDGEPRLDLCYAE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D     D N V T  G  VEVQG+AE   F +    A+L+LA    A+L +LQ++ ++
Sbjct: 181 DVEAGTDMNVVCTGDGKFVEVQGTAEGQPFDRAELDALLDLAAGGCAELTRLQQEALN 238


>gi|123440458|ref|YP_001004452.1| ribonuclease PH [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|166228324|sp|A1JHW7|RNPH_YERE8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|122087419|emb|CAL10200.1| ribonuclease PH [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 238

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 118/240 (49%), Positives = 159/240 (66%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +         +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNKLVASGKL--KANPMKGLVAAVSVGIVKGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +    +L LA+  I  + + QK  +  
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARGGIETIFQAQKAALEQ 238


>gi|325570405|ref|ZP_08146182.1| ribonuclease PH/Ham1 protein [Enterococcus casseliflavus ATCC
           12755]
 gi|325156615|gb|EGC68792.1| ribonuclease PH/Ham1 protein [Enterococcus casseliflavus ATCC
           12755]
          Length = 450

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 117/239 (48%), Positives = 161/239 (67%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+E  +R +++   V K+ EGS ++ FGDT ++ +AT+E++VP ++R+T  GWIT
Sbjct: 1   MRHDGRKETMLRPVNIQTNVYKHPEGSVVISFGDTTVICSATIEDRVPPFLRDTGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+I R+LR+VVDL  LG R I++DCDV+Q
Sbjct: 61  AEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDCDVVQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   +  +    +K      +K H+AAIS G+L  G  + DLDY
Sbjct: 121 ADGGTRTASITGAFVALRLAIDTL--LRDKALTEDPIKEHLAAISVGILPDGTCVTDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS+  VD N VMT+SG  VE+QG+ E ATF       ML   K  I +LI  QK+ +
Sbjct: 179 QEDSSAAVDMNLVMTESGRFVELQGTGEEATFDGQQLNEMLIYGKTAIEELIAYQKEAL 237


>gi|256824846|ref|YP_003148806.1| RNAse PH [Kytococcus sedentarius DSM 20547]
 gi|256688239|gb|ACV06041.1| RNAse PH [Kytococcus sedentarius DSM 20547]
          Length = 288

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 111/226 (49%), Positives = 151/226 (66%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R++ +TR    +A GS L++FG T +L  A+ +  VP W++    GW+T 
Sbjct: 23  RHDGRAPDQLRDVRITRGWLDHAAGSVLIEFGRTRVLCAASFQPGVPRWLKGQGTGWVTG 82

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V G+  GR+QEI R++GRALR+ VD SALG   I+IDCDV+QA
Sbjct: 83  EYAMLPAATHTRSDRESVKGKVKGRTQEISRLLGRALRAAVDTSALGENTIVIDCDVLQA 142

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGAWVAL D +   +   +    +QVL+  + AIS G++ G P++DLDY E
Sbjct: 143 DGGTRTAAITGAWVALADAVAAGKASGDIPANAQVLRDSIQAISVGIVDGQPVLDLDYPE 202

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
           DS    D N VMT +G +VEVQG+AE  TF +    A+L+LA+D  
Sbjct: 203 DSGAGADMNVVMTGAGELVEVQGTAEGQTFDRAMLNALLDLAQDGC 248


>gi|297242886|ref|ZP_06926824.1| ribonuclease PH [Gardnerella vaginalis AMD]
 gi|296889097|gb|EFH27831.1| ribonuclease PH [Gardnerella vaginalis AMD]
          Length = 253

 Score =  322 bits (827), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 105/229 (45%), Positives = 151/229 (65%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR  +++R + +TR+ +   EGS L++ G+T ++ TAT    VP W R++  GW+T
Sbjct: 14  IRVDGRNVDELRPVRITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRRDSGLGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR VVD+ A+G  QI IDCDV+Q
Sbjct: 74  AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQIDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA+VAL D L   E   +    + V+K  ++A+S G++ G P++DL Y 
Sbjct: 134 ADGGTRTASVTGAYVALVDALNWAEKNGHIRSAASVIKDSISAVSVGVINGTPMLDLPYV 193

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
           EDS    D N  MT SG  +E+QG+AE   F++D    +L+LA     +
Sbjct: 194 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRDELNTLLDLATKGNRE 242


>gi|296314065|ref|ZP_06864006.1| tRNA nucleotidyltransferase [Neisseria polysaccharea ATCC 43768]
 gi|296839317|gb|EFH23255.1| tRNA nucleotidyltransferase [Neisseria polysaccharea ATCC 43768]
          Length = 241

 Score =  322 bits (827), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 114/234 (48%), Positives = 166/234 (70%), Gaps = 2/234 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  + +R+I +T     + +GSCL++ G+T ++ TA+++E VP ++R    GW+TAEYGM
Sbjct: 9   RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVTAEYGM 68

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADGGT
Sbjct: 69  LPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGGT 128

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTA+ITGA+VAL   +  +   S+       ++  VAA+S G++ G P++DLDY EDS  
Sbjct: 129 RTASITGAFVALQIAVGKL--VSDGILTENPIREAVAAVSAGVVNGVPLLDLDYPEDSGC 186

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D D N VMT SG I+E+QG+AE A FS +    ++ LA+  I +L++ QK  ++
Sbjct: 187 DSDVNIVMTASGKIIEIQGTAEGAPFSLEELGKLIGLAEKGIRELVRYQKAALN 240


>gi|313638210|gb|EFS03458.1| ribonuclease PH [Listeria seeligeri FSL S4-171]
          Length = 248

 Score =  322 bits (827), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 114/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ N +R+I +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 1   MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA++A+   +  ++  +        +K  +AA S G+L  G  ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLD--AEVPFTKFPVKDFLAATSVGVLEEGGTVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N +MT SG  VE+QG+ E ATFS+     ++ L K  IA+LI++QK+ + 
Sbjct: 179 IEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGIAELIEIQKETLG 238

Query: 240 NEV 242
            EV
Sbjct: 239 EEV 241


>gi|317050112|ref|YP_004117760.1| ribonuclease PH [Pantoea sp. At-9b]
 gi|316951729|gb|ADU71204.1| ribonuclease PH [Pantoea sp. At-9b]
          Length = 238

 Score =  322 bits (827), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 125/240 (52%), Positives = 166/240 (69%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR  NQ+R ++LTR  +K+AEGS LV+FG+T +L TAT++E VP +++    GW+T
Sbjct: 1   MRPAGRHTNQVRPVTLTRHYTKHAEGSVLVEFGETKVLCTATVDEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+I R+LR+ VDL ALG   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMAREAAKGKQGGRTLEIQRLIARSLRAAVDLQALGEYTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +   ++    S  LKG VAAIS G++ G    DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALNKL--VADGKLKSSPLKGMVAAISVGIVEGEARCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +    +L LA+  I  LI  QK  +++
Sbjct: 179 EDSAAETDMNVVMLEDGRMIEVQGTAEGEPFSHEELLELLALARGGIEQLIVAQKAALAD 238


>gi|154486637|ref|ZP_02028044.1| hypothetical protein BIFADO_00454 [Bifidobacterium adolescentis
           L2-32]
 gi|154084500|gb|EDN83545.1| hypothetical protein BIFADO_00454 [Bifidobacterium adolescentis
           L2-32]
          Length = 254

 Score =  322 bits (827), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 105/229 (45%), Positives = 152/229 (66%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R + +TR  +   EGS L++ G+T ++ TAT    VP W +++  GW+T
Sbjct: 14  VRADGRKVDELRPVRITRHFTDVPEGSVLIECGNTRVMCTATFTAGVPRWRKDSGLGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  RE+V G+ GGR+ EI R+IGR LR VVD+ ALG  Q+ IDCDV+Q
Sbjct: 74  AEYAMLPRATADRTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENQVQIDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D +   E+  +     +VLK  V+A+S G++ G P++DL Y 
Sbjct: 134 ADGGTRTASITGAYVALVDAMHWAEEHKHVKSADRVLKDWVSAVSVGVINGKPMLDLPYI 193

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
           EDS    D N  MT SG  +E+QG+AE   F++     +L+LA+    +
Sbjct: 194 EDSQAMTDMNVAMTGSGDFIEIQGTAEHRPFNRAELNTLLDLAEKGNRE 242


>gi|283782839|ref|YP_003373593.1| tRNA nucleotidyltransferase [Gardnerella vaginalis 409-05]
 gi|283441100|gb|ADB13566.1| tRNA nucleotidyltransferase [Gardnerella vaginalis 409-05]
          Length = 253

 Score =  322 bits (827), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 105/229 (45%), Positives = 151/229 (65%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR  +++R + +TR+ +   EGS L++ G+T ++ TAT    VP W R++  GW+T
Sbjct: 14  IRVDGRDVDELRPVHITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRRDSGLGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR VVD+ A+G  QI IDCDV+Q
Sbjct: 74  AEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQIDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA++TGA+VAL D L   E   +    + V+K  ++A+S G++ G P++DL Y 
Sbjct: 134 ADGGTRTASVTGAYVALVDALHWAEKNGHIRSAANVIKDSISAVSVGVINGTPMLDLPYV 193

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
           EDS    D N  MT SG  +E+QG+AE   F++D    +L+LA     +
Sbjct: 194 EDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRDELNTLLDLATKGNRE 242


>gi|86609199|ref|YP_477961.1| ribonuclease PH [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123502063|sp|Q2JKT3|RNPH_SYNJB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|86557741|gb|ABD02698.1| ribonuclease PH [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 244

 Score =  322 bits (827), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 110/239 (46%), Positives = 154/239 (64%), Gaps = 3/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R   Q+R +S  R  ++YA GS LVKFG TH+L TA++ E+VP +++NT  GW+TA
Sbjct: 5   RPDNRTAAQLRPVSFERHFTRYAPGSVLVKFGHTHVLCTASVAEEVPPFLQNTGQGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE +  +  GR+ EIQR+IGR+LR+ +D   LGSR I +D DV+QA
Sbjct: 65  EYRMLPGATQQRQPREML--KLSGRTAEIQRLIGRSLRAALDFRKLGSRTITVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-SQVLKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTAAITG +VALHD +  +             L+  VAA+S G++ G  +VDL Y 
Sbjct: 123 DGGTRTAAITGGYVALHDAITWLYKQGALDPAQGSPLRQQVAALSVGIVQGEVLVDLCYE 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  +VD N VM + G  +E+QG+AE A FS+     ML +A+  I +L++ Q+  ++
Sbjct: 183 EDSQAEVDMNIVMNEQGSFIEIQGTAEAACFSRPQLLQMLEMAQAGIQELLQAQRQALN 241


>gi|172039437|ref|YP_001805938.1| ribonuclease PH [Cyanothece sp. ATCC 51142]
 gi|254808585|sp|B1WUL8|RNPH_CYAA5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|171700891|gb|ACB53872.1| ribonuclease PH [Cyanothece sp. ATCC 51142]
          Length = 240

 Score =  322 bits (827), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 106/239 (44%), Positives = 153/239 (64%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ NQ+R ++     ++++ GS L + G+T +L TA++EE VP ++  +  GW+TA
Sbjct: 5   RPDGRQPNQLRPVNFELNFTRFSAGSVLAQCGETKVLCTASIEEYVPRFLLGSGQGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE +  +  GR+QEIQR+IGR+LRS +DL  LG R I IDCDV+QA
Sbjct: 65  EYRMLPSATQERQRRELL--KLSGRTQEIQRLIGRSLRSCIDLQQLGERSITIDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRT +ITG +VAL   L  +       Q    L+  VAAIS G++ G   +DL+Y E
Sbjct: 123 DAGTRTTSITGGYVALALALNKLIKKGELIQ--SPLRFPVAAISVGLIEGEAFLDLNYPE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  D+D N VMT +  ++EVQG+AE  +F++     +L+LA+  I +L+ LQ   +S 
Sbjct: 181 DSKADIDFNVVMTGNLDLIEVQGTAEENSFTRSQLNDILDLAELGIKELVSLQNQALSQ 239


>gi|15615630|ref|NP_243934.1| ribonuclease PH [Bacillus halodurans C-125]
 gi|21759418|sp|Q9K8D8|RNPH_BACHD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|10175690|dbj|BAB06787.1| ribonuclease PH [Bacillus halodurans C-125]
          Length = 257

 Score =  322 bits (827), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 107/240 (44%), Positives = 152/240 (63%), Gaps = 3/240 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+  R+ +++R IS+      + EGS L+  G+T ++ TA+LE++VP ++R    GWIT
Sbjct: 1   MRMDERKADELRPISIEINYLHHPEGSVLISIGNTKVICTASLEDRVPPFLRGQGKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALRS++DL  +G R + IDCDVIQ
Sbjct: 61  AEYSMLPRATEQRNMRESTRGKVSGRTMEIQRLIGRALRSIIDLDKIGERTVWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDY 179
           ADGGTRT +ITGA+VAL   ++     +N       +   +AA+S G+      I+DL Y
Sbjct: 121 ADGGTRTTSITGAFVALSLAMEK--ALANGAIQEWPIDDFLAAVSVGIDPKLGAILDLCY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED+  +VD N VMT  G  VE+QG+ E ATFS +    +L LA   I  LI+ Q++ + 
Sbjct: 179 AEDAQAEVDMNVVMTGKGEYVELQGTGEEATFSHNQLLTILALADKGIKQLIEEQRNALG 238


>gi|298369114|ref|ZP_06980432.1| tRNA nucleotidyltransferase [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298283117|gb|EFI24604.1| tRNA nucleotidyltransferase [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 246

 Score =  322 bits (826), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 117/234 (50%), Positives = 170/234 (72%), Gaps = 2/234 (0%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
           GR  + +R+I +T     +A+GSCL++ G+T ++ TA+++E VP ++R  + GW+TAEYG
Sbjct: 8   GRAADSLRDIKITPHFLPHADGSCLIECGNTKVICTASVDENVPPFLRGKEQGWVTAEYG 67

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           MLP ST  R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADGG
Sbjct: 68  MLPASTATRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG 127

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
           TRTA+ITGA+VAL   ++ +   S+       ++  VAA+S G++ G P++DLDY EDS 
Sbjct: 128 TRTASITGAFVALQIAVEKL--LSDGLIGENPIREAVAAVSAGVVGGVPLLDLDYPEDSG 185

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            D D N VMT SG I+E+QG+AE A FS D    ++ LA+  IA+L++ Q++ +
Sbjct: 186 CDSDVNIVMTASGKIIEIQGTAEGAPFSLDELGKLIALAQKGIAELVRHQQNAL 239


>gi|238918030|ref|YP_002931544.1| ribonuclease PH, [Edwardsiella ictaluri 93-146]
 gi|259494120|sp|C5B9C9|RNPH_EDWI9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|238867598|gb|ACR67309.1| ribonuclease PH, putative [Edwardsiella ictaluri 93-146]
          Length = 238

 Score =  322 bits (826), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 121/240 (50%), Positives = 160/240 (66%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR   Q+R + LTR  +K+AEGS LV+FGDT +L TA+++E VP +++    GW+T
Sbjct: 1   MRPEGRAAGQIRPLRLTRHYTKHAEGSVLVEFGDTKVLCTASVDEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMAREAAKGKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +            LKG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALGALVAAGKL--KESPLKGMVAAVSVGIVAGGAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +    +L LA+D I  +I+ QK  +  
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARDGIGQIIQAQKTALEQ 238


>gi|254520650|ref|ZP_05132706.1| ribonuclease Ph [Clostridium sp. 7_2_43FAA]
 gi|226914399|gb|EEH99600.1| ribonuclease Ph [Clostridium sp. 7_2_43FAA]
          Length = 248

 Score =  322 bits (826), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 115/239 (48%), Positives = 159/239 (66%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+  Q+R   +TR  +KYAEGS L++ GDT ++ TA++E+KVP +++    GWIT
Sbjct: 1   MRIDGRKNEQVRIAKITRGYTKYAEGSVLIEVGDTKVICTASIEDKVPPFLKGQGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRSTG R  R+    +  GR+ EIQR+IGRALRSV+DL ALG + I IDCDVIQ
Sbjct: 61  AEYNMLPRSTGTRKVRDIARLKVDGRTMEIQRLIGRALRSVMDLKALGEKTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +ITGA+VAL D +  +     K      ++  V+A S G+L    I+DL Y 
Sbjct: 121 ADGGTRTTSITGAFVALVDAVNKLHK--EKPFEVYPIRKFVSATSVGILNDEKILDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD N + TD G  +E+QG+ E + FS+D    +L+LA+  I  ++++QKD + 
Sbjct: 179 EDSNAKVDMNVIATDEGEFIEIQGTGEESPFSRDDLNDLLDLAQKGIKQMVQIQKDALK 237


>gi|258592582|emb|CBE68891.1| RNase PH [NC10 bacterium 'Dutch sediment']
          Length = 258

 Score =  322 bits (826), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 116/242 (47%), Positives = 165/242 (68%), Gaps = 2/242 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R + + R   ++AEGS L++ G+T +L TAT+EEKVP ++R T  GW+T
Sbjct: 14  VRSDGRKIDEIRPVKVDRGYLRHAEGSLLIEVGETRVLCTATVEEKVPPFLRATGQGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  RE+ +GR  GR+ EIQR+IGR+LR+V+DL+ LG R ++IDCDVIQ
Sbjct: 74  AEYGMLPRATKTRTPRESATGRASGRTFEIQRLIGRSLRAVIDLTRLGERTVLIDCDVIQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT AITGA+VA+ D L  +++         +LK  VA IS G + G  ++DL+Y 
Sbjct: 134 ADGGTRTTAITGAFVAMADALSRLQENGQL--KGPLLKDFVAGISIGYVDGELLLDLNYA 191

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  DVD N VMT +   VEVQG+AE   + +     ML+LA   I  L+ LQ+ ++  
Sbjct: 192 EDSMADVDMNVVMTGARKFVEVQGTAEEVPYDKAQLDRMLDLATRGIDQLVDLQRQLLGT 251

Query: 241 EV 242
           ++
Sbjct: 252 DI 253


>gi|288921256|ref|ZP_06415540.1| ribonuclease PH [Frankia sp. EUN1f]
 gi|288347346|gb|EFC81639.1| ribonuclease PH [Frankia sp. EUN1f]
          Length = 256

 Score =  322 bits (826), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 109/241 (45%), Positives = 151/241 (62%), Gaps = 7/241 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR+ +Q+R+I++ R   ++AEGS L+  G T +L  A++ E VP W + +  GW+T
Sbjct: 2   IRVDGRKTDQLRDITIVRGWQEHAEGSALISAGLTRVLCAASVTEGVPRWRKGSGLGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+ +DL ALG   I IDCDV+ 
Sbjct: 62  AEYSMLPRATHTRNDRESVRGRIGGRTHEISRLIGRSLRAAIDLKALGENTIAIDCDVLL 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D  + +            +   V A+S G++ G P++DL Y 
Sbjct: 122 ADGGTRTAAITGAYVALADACRWLGR-------PSAIVTSVCAVSVGIVKGVPMLDLAYT 174

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDST D D N V T +G  VEVQG+AE   F +     +LNLA      L ++Q   ++ 
Sbjct: 175 EDSTADTDMNVVCTGTGGFVEVQGTAEGTPFDRAALDELLNLATAGCNRLTEIQNAALAQ 234

Query: 241 E 241
            
Sbjct: 235 P 235


>gi|237745873|ref|ZP_04576353.1| ribonuclease PH/Ham1 protein [Oxalobacter formigenes HOxBLS]
 gi|229377224|gb|EEO27315.1| ribonuclease PH/Ham1 protein [Oxalobacter formigenes HOxBLS]
          Length = 248

 Score =  322 bits (826), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 161/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R +GR  + MR I   R  +KYAEGS L  FGDT ++ TA++EE VP ++R    GW+T
Sbjct: 9   IRSNGRPLDAMRSIEFIRNYTKYAEGSVLTVFGDTQVICTASIEESVPPFLRGRGRGWLT 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R++REA  GRQ GR+QEIQR+IGR++R+  DL+A G R + +DCDVIQ
Sbjct: 69  AEYGMLPRSTHTRMEREAARGRQSGRTQEIQRLIGRSIRAAFDLNAFGERTLRLDCDVIQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+G  +A +D    M +          L+  VAAIS G++ G P++DLDY 
Sbjct: 129 ADGGTRTASISGVMIAAYDAFSLMVE--EGLIEKVPLRHFVAAISVGVIQGVPMLDLDYQ 186

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS+ D D N VMT++G  VE+QG+AE   FS      ML +A+  I +LI +QK V+ 
Sbjct: 187 EDSSCDTDMNVVMTEAGDFVEIQGTAEGGAFSHSLLNEMLGMAQQGIGELIHMQKRVLG 245


>gi|325068398|ref|ZP_08127071.1| ribonuclease PH [Actinomyces oris K20]
          Length = 268

 Score =  322 bits (826), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 106/242 (43%), Positives = 146/242 (60%), Gaps = 2/242 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R +++TR    +AEGS LV FG T +L  A+  E VP W + +  GW+TA
Sbjct: 8   RKDGRAVDELRPVTMTRHWLDHAEGSVLVTFGRTRVLCAASFTEGVPRWRKGSGEGWVTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+   R  RE+V G+ GGR+ EI R+IGR+LR ++D++ALG   I +DCDV+QA
Sbjct: 68  EYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRSLRGIIDVAALGENTIALDCDVLQA 127

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS--QVLKGHVAAISCGMLCGYPIVDLDY 179
           DGGTRTAAITGA+VAL D +                VL   ++AIS G++ G P +DL Y
Sbjct: 128 DGGTRTAAITGAYVALADAVAWGTQRGLIKARPGRPVLSDSLSAISVGIIDGVPCLDLPY 187

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED     D N V T  G  +EVQG+AE A F +     +L+LA    + L  LQ+  ++
Sbjct: 188 EEDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFDRSELGELLDLAATGNSRLAALQRQALA 247

Query: 240 NE 241
             
Sbjct: 248 GP 249


>gi|326773720|ref|ZP_08233003.1| tRNA nucleotidyltransferase [Actinomyces viscosus C505]
 gi|326636950|gb|EGE37853.1| tRNA nucleotidyltransferase [Actinomyces viscosus C505]
          Length = 268

 Score =  322 bits (826), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 106/242 (43%), Positives = 146/242 (60%), Gaps = 2/242 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R +++TR    +AEGS LV FG T +L  A+  E VP W + +  GW+TA
Sbjct: 8   RKDGRAVDELRPVTMTRHWLDHAEGSVLVTFGRTRVLCAASFTEGVPRWRKGSGEGWVTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+   R  RE+V G+ GGR+ EI R+IGR+LR ++D++ALG   I +DCDV+QA
Sbjct: 68  EYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRSLRGIIDVAALGENTIALDCDVLQA 127

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS--QVLKGHVAAISCGMLCGYPIVDLDY 179
           DGGTRTAAITGA+VAL D +                VL   ++AIS G++ G P +DL Y
Sbjct: 128 DGGTRTAAITGAYVALTDAVAWGTQRGLIKARPGKPVLSDSLSAISVGIIDGVPCLDLPY 187

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED     D N V T  G  +EVQG+AE A F +     +L+LA    + L  LQ+  ++
Sbjct: 188 EEDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFDRSELGELLDLAATGNSRLAALQRQALA 247

Query: 240 NE 241
             
Sbjct: 248 GP 249


>gi|257466146|ref|ZP_05630457.1| ribonuclease PH [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917304|ref|ZP_07913544.1| ribonuclease PH [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691179|gb|EFS28014.1| ribonuclease PH [Fusobacterium gonidiaformans ATCC 25563]
          Length = 249

 Score =  322 bits (826), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 114/240 (47%), Positives = 162/240 (67%), Gaps = 2/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ENQ+REI +TR  + +AEGS L++ G+T ++ TA++ EKVP +I+NT  GW+TA
Sbjct: 3   RIDGRKENQLREIKITRDFNIHAEGSVLIESGNTKVICTASVSEKVPSFIKNTGKGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY M+PR+TG R +REA  G+  GR+ EIQR+IGRALRS +DL  LG R I +DCDVIQA
Sbjct: 63  EYSMIPRATGERNQREAAKGKLSGRTMEIQRLIGRALRSSIDLEKLGERTITLDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA+      +            +   VAA+S G   G   +DL+Y E
Sbjct: 123 DGGTRTASITGAFVAMAIAAAKL--LREGTITESPVLSSVAAVSVGKCEGNIFLDLNYVE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS+ +VD N +  D G  +EVQG+ E ATF +    A+L++A+  I  L++ Q++V+  +
Sbjct: 181 DSSAEVDMNVIQNDLGEYIEVQGTGEEATFCRKELNALLDMAEIGIHQLLEKQREVLGED 240


>gi|288573194|ref|ZP_06391551.1| ribonuclease PH [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568935|gb|EFC90492.1| ribonuclease PH [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 257

 Score =  322 bits (826), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 118/238 (49%), Positives = 159/238 (66%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR    MR++S  R  S YAEGSCLV FG T +L TA++EEKVP ++R +  GW+TA
Sbjct: 10  RADGRSGYDMRKVSFQRGFSCYAEGSCLVSFGKTKVLCTASVEEKVPPFLRGSDRGWVTA 69

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LPRST  RV R+   G+  GRS EIQR++GR+LR+ VD+ +LG R I IDCDV+QA
Sbjct: 70  EYSLLPRSTSTRVPRDISRGKLNGRSSEIQRLVGRSLRAAVDMESLGERTIWIDCDVLQA 129

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR+AA+TG +VAL D L+H+         S  L+ +VAA+S G + G  + DL Y E
Sbjct: 130 DGGTRSAAVTGGFVALVDALRHLWRIGKL--KSIPLRSYVAAVSVGKISGKLLTDLCYDE 187

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N VM   G ++E+QG+ E+ TFS+D    ML+LA   + +LI LQ+  + 
Sbjct: 188 DSRAEVDMNVVMDGLGRLIEIQGTGEKDTFSRDEMNGMLDLAFRSVEELIVLQERALE 245


>gi|310778905|ref|YP_003967238.1| ribonuclease PH [Ilyobacter polytropus DSM 2926]
 gi|309748228|gb|ADO82890.1| ribonuclease PH [Ilyobacter polytropus DSM 2926]
          Length = 245

 Score =  322 bits (825), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 106/240 (44%), Positives = 158/240 (65%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R+ +Q+R+I +    + YAEGS L++ G+T ++ TA++ ++VP ++RN   GW+T
Sbjct: 5   LRDDNRKLDQIRDIKIKPNFTIYAEGSVLIEMGNTKVICTASISDRVPPFLRNQGRGWLT 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  REAV G+  GR+ EIQR+IGR+LR+ +DL  +G + I +DCDVIQ
Sbjct: 65  AEYSMLPRATEDRNMREAVKGKLSGRTMEIQRLIGRSLRACIDLEKIGEKTITVDCDVIQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +  +   L   +           L  +VAAIS G++ G P++DL Y 
Sbjct: 125 ADGGTRTASITGGY--MALALAVKKLLKKDKLKENPLIANVAAISAGIVGGQPMLDLKYT 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDST +VD N +M   G  VEVQG+ E AT+++     ML+LA+  I +L++LQ  ++  
Sbjct: 183 EDSTAEVDMNVIMNSKGEFVEVQGTGEEATYTRRELNEMLDLAEKGIMELVELQNKIVEE 242


>gi|289434487|ref|YP_003464359.1| ribonuclease PH [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289170731|emb|CBH27271.1| ribonuclease PH [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 248

 Score =  322 bits (825), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 114/243 (46%), Positives = 162/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ N +R+I +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 1   MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVENKVPPFMRGEGRGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA++A+   +  ++  +        +K  +AA S G+L  G  ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLD--AEVPFTKFPVKDLLAATSVGVLEEGGTVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N +MT SG  VE+QG+ E ATFS+     ++ L K  IA+LI++QK+ + 
Sbjct: 179 IEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSEAELAELIALGKKGIAELIEIQKETLG 238

Query: 240 NEV 242
            EV
Sbjct: 239 EEV 241


>gi|269137419|ref|YP_003294119.1| RNase PH [Edwardsiella tarda EIB202]
 gi|267983079|gb|ACY82908.1| RNase PH [Edwardsiella tarda EIB202]
 gi|304557493|gb|ADM40157.1| Ribonuclease PH [Edwardsiella tarda FL6-60]
          Length = 238

 Score =  322 bits (825), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 120/240 (50%), Positives = 159/240 (66%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR   Q+R + LTR  +K+AEGS LV+FGDT +L TA+++E VP +++    GW+T
Sbjct: 1   MRPEGRAAGQIRPLRLTRHYTKHAEGSVLVEFGDTKVLCTASVDEGVPRFLKGQGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R+ REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDVIQ
Sbjct: 61  AEYGMLPRSTHSRMAREAAKGKQGGRTMEIQRLIARSLRAAVDLKKLGEFTITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA VAL D L  +            LKG VAA+S G++    + DL+Y 
Sbjct: 121 ADGGTRTASITGACVALADALGALVAAGKL--KESPLKGMVAAVSVGIVADEAVCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +    +L LA+D I  +I+ QK  +  
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARDGIGQIIQAQKTALEQ 238


>gi|227495770|ref|ZP_03926081.1| ribonuclease PH [Actinomyces urogenitalis DSM 15434]
 gi|226834699|gb|EEH67082.1| ribonuclease PH [Actinomyces urogenitalis DSM 15434]
          Length = 263

 Score =  322 bits (825), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 110/242 (45%), Positives = 156/242 (64%), Gaps = 2/242 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R +++TRR  ++ EGS LV+FG T +L  A+  E VP W + +  GW+TA
Sbjct: 9   RKDGRATDELRPVTITRRWQEHGEGSVLVEFGRTRVLCVASFTEGVPRWRKGSGEGWVTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+   R  RE+V G+ GGR+ EI R+IGRALR VVD++ALG   I +DCDV+QA
Sbjct: 69  EYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRALRGVVDVAALGENTIALDCDVLQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS--QVLKGHVAAISCGMLCGYPIVDLDY 179
           DGGTRTA++TGA+VAL D +    +       +   V+   ++AIS G++ G P +DL Y
Sbjct: 129 DGGTRTASVTGAYVALADAVAWGTERGLISPRAGKPVIADSLSAISVGIIDGVPCLDLPY 188

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED     D N V T +G  +EVQG+AE A F++D   A+L+LA     +L +LQK V++
Sbjct: 189 EEDVRAHTDMNVVQTGAGKFIEVQGTAEHAPFNRDELCALLDLATKGNGELAELQKAVLA 248

Query: 240 NE 241
             
Sbjct: 249 GP 250


>gi|238789552|ref|ZP_04633336.1| Ribonuclease PH [Yersinia frederiksenii ATCC 33641]
 gi|238722305|gb|EEQ13961.1| Ribonuclease PH [Yersinia frederiksenii ATCC 33641]
          Length = 238

 Score =  322 bits (825), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 118/240 (49%), Positives = 161/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +         +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNKLVASGKL--KANPMKGLVAAVSVGIVKGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +   A+L+LA+  I  + + QK  +  
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLDLARGGIETIFQAQKAALEQ 238


>gi|257452055|ref|ZP_05617354.1| ribonuclease PH [Fusobacterium sp. 3_1_5R]
 gi|317058603|ref|ZP_07923088.1| ribonuclease Ph [Fusobacterium sp. 3_1_5R]
 gi|313684279|gb|EFS21114.1| ribonuclease Ph [Fusobacterium sp. 3_1_5R]
          Length = 249

 Score =  322 bits (825), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 113/240 (47%), Positives = 161/240 (67%), Gaps = 2/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ENQ+REI +TR  + +AEGS L++ G+T ++ TA++ EKVP +I+NT  GW+TA
Sbjct: 3   RIDGRKENQLREIKITRDFNIHAEGSVLIESGNTKVICTASVSEKVPSFIKNTGKGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY M+PR+TG R +REA  G+  GR+ EIQR+IGRALRS +DL  LG R I +DCDVIQA
Sbjct: 63  EYSMIPRATGERNQREAAKGKLSGRTMEIQRLIGRALRSSIDLEKLGERTITLDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA+      +            +   VAA+S G   G   +DL+Y E
Sbjct: 123 DGGTRTASITGAFVAMAIAAAKL--LREGTITDSPVLSSVAAVSVGKCEGNIFLDLNYVE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS+ +VD N +  D G  +EVQG+ E ATF +     +L++A+  I  L++ Q++V+  +
Sbjct: 181 DSSAEVDMNVIQNDLGEYIEVQGTGEEATFCRKELNTLLDMAEIGIHQLLEKQREVLGED 240


>gi|225351161|ref|ZP_03742184.1| hypothetical protein BIFPSEUDO_02751 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158617|gb|EEG71859.1| hypothetical protein BIFPSEUDO_02751 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 253

 Score =  322 bits (825), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 106/229 (46%), Positives = 153/229 (66%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R + +TR  +   EGS LV+ G+T ++ TAT    VP W +++  GW+T
Sbjct: 13  IRTDGRKVDELRPVRITRHFTDVPEGSVLVECGNTRVMCTATFTAGVPRWRKDSGLGWVT 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  RE+V G+ GGR+ EI R+IGR LR VVD+ ALG  Q+ IDCDV+Q
Sbjct: 73  AEYAMLPRATADRTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENQVQIDCDVLQ 132

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D ++  E   +     +V+K  V+A+S G++ G P++DL Y 
Sbjct: 133 ADGGTRTASITGAYVALVDAMRWAEKHKHIRSAERVIKDSVSAVSVGVIDGTPMLDLPYI 192

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
           EDS    D N  MT SG  +E+QG+AE   F++    A+L+LA+    +
Sbjct: 193 EDSKAMTDMNVAMTGSGEFIEIQGTAEHRPFNRAELNALLDLAEKGNKE 241


>gi|86607255|ref|YP_476018.1| ribonuclease PH [Synechococcus sp. JA-3-3Ab]
 gi|123504955|sp|Q2JRJ9|RNPH_SYNJA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|86555797|gb|ABD00755.1| ribonuclease PH [Synechococcus sp. JA-3-3Ab]
          Length = 242

 Score =  321 bits (824), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 110/239 (46%), Positives = 156/239 (65%), Gaps = 3/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   Q+R IS  R  ++YA GS LVKFGDTH+L TA++ E+VP +++NT  GW+TA
Sbjct: 5   RPDGRTAAQLRPISFQRHFTRYAPGSVLVKFGDTHVLCTASVAEEVPPFLQNTGQGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE +  +  GR+ EIQR+IGR+LR+ +D   LGSR I +D DV+QA
Sbjct: 65  EYRMLPTATQQRQPRETL--KVSGRTAEIQRLIGRSLRAALDFHKLGSRTITVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-SQVLKGHVAAISCGMLCGYPIVDLDYG 180
           DG TRTAAITG +VALHD +  +             L+  VAA+S G++ G  +VDL Y 
Sbjct: 123 DGSTRTAAITGGYVALHDAITWLYKQGLLDPAQGSPLRQQVAALSVGIVRGEVLVDLCYE 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  +VD N VM + G ++E+QG+AE   F +     ML++A+  I +L++ Q++ ++
Sbjct: 183 EDSQAEVDMNIVMNEQGALIEIQGTAEAGCFDRSQLLQMLDMAQAGIQELLRAQRETLN 241


>gi|319943444|ref|ZP_08017726.1| tRNA nucleotidyltransferase [Lautropia mirabilis ATCC 51599]
 gi|319743259|gb|EFV95664.1| tRNA nucleotidyltransferase [Lautropia mirabilis ATCC 51599]
          Length = 253

 Score =  321 bits (824), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 122/245 (49%), Positives = 162/245 (66%), Gaps = 7/245 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  + +R +   RR +++AEGS LV FGDT +L TA++ + VP ++R    GW+TA
Sbjct: 9   RHDGRALDGLRPVRFQRRFTRHAEGSVLVSFGDTRVLCTASVLDSVPPFLRGKGQGWVTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V DL  LG R I +DCDV+QA
Sbjct: 69  EYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSLRAVTDLKRLGERTIHLDCDVLQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGYP---IVD 176
           DGGTRTAAITGAWVAL D +  +         S  L+  VAAIS G++   G     ++D
Sbjct: 129 DGGTRTAAITGAWVALRDAVNGLLAAGKL--TSDPLREAVAAISVGIVALPGAAPACVLD 186

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           LDY EDS  + D N VMT SG +VE+QG+AE A FS+     +L+LA   I +L++LQ+ 
Sbjct: 187 LDYQEDSGCETDMNVVMTASGGLVEIQGTAEGAPFSRQQASELLDLAAKGIDELVRLQRA 246

Query: 237 VISNE 241
            +  E
Sbjct: 247 ALQEE 251


>gi|126656098|ref|ZP_01727482.1| ribonuclease PH [Cyanothece sp. CCY0110]
 gi|126622378|gb|EAZ93084.1| ribonuclease PH [Cyanothece sp. CCY0110]
          Length = 240

 Score =  321 bits (824), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 104/239 (43%), Positives = 158/239 (66%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ NQ+R ++     ++++ GS +++ G+T +L TA++E++VP ++  +  GW+TA
Sbjct: 5   RPDGRQPNQLRPVNFELNFTRFSAGSVVIECGETKVLCTASIEDRVPRFLLGSGQGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE +  +  GR+QEIQR+IGR+LRS +DL  LG R I IDCDV+QA
Sbjct: 65  EYRMLPSATQERQRRELL--KLSGRTQEIQRLIGRSLRSCIDLQQLGERSITIDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTA+ITG +VAL   +  +       Q    L+  VAAIS G++ G   +DL+Y E
Sbjct: 123 DAGTRTASITGGYVALGLAVNKLIKQGELIQ--SPLRFPVAAISVGLIEGEAFLDLNYPE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  D+D N VMT++  ++EVQG+AE  +F++     +L+LA+  I +L+ LQ  V++ 
Sbjct: 181 DSKADIDFNVVMTENLDLIEVQGTAEENSFTRSQLNDILDLAEIGIKELVSLQNKVLNE 239


>gi|313633649|gb|EFS00407.1| ribonuclease PH [Listeria seeligeri FSL N1-067]
          Length = 251

 Score =  321 bits (824), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 113/243 (46%), Positives = 161/243 (66%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ N +R+I +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 4   MRVDGRESNALRKIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 63

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 64  AEYAMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTIWLDCDVIQ 123

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA++A+   +  ++  +        +K  +AA S G+L  G  ++DL+Y
Sbjct: 124 ADGGTRTASITGAFIAMVMAIAKLD--AEVPFTKFPVKDFLAATSVGVLEEGGTVLDLNY 181

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N +MT SG  VE+QG+ E  TFS+     ++ L K  IA+LI++QK+ + 
Sbjct: 182 IEDSAAQVDMNIIMTGSGAFVELQGTGEETTFSEAELAELIALGKKGIAELIEIQKETLG 241

Query: 240 NEV 242
            EV
Sbjct: 242 EEV 244


>gi|212716722|ref|ZP_03324850.1| hypothetical protein BIFCAT_01659 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660426|gb|EEB21001.1| hypothetical protein BIFCAT_01659 [Bifidobacterium catenulatum DSM
           16992]
          Length = 254

 Score =  321 bits (824), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 105/229 (45%), Positives = 152/229 (66%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R + +TR  +   EGS LV+ G+T ++ TAT    VP W +++  GW+T
Sbjct: 14  IRADGRKVDELRPVRITRHFTDVPEGSVLVECGNTRVMCTATFTAGVPRWRKDSGLGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  RE+V G+ GGR+ EI R+IGR LR VVD+ ALG  Q+ IDCDV+Q
Sbjct: 74  AEYAMLPRATADRTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENQVQIDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D ++  E   +     +V+K  V+A+S G++ G P++DL Y 
Sbjct: 134 ADGGTRTASITGAYVALVDAMRWAEKHKHIRSADRVIKDSVSAVSVGVIDGKPMLDLPYI 193

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
           EDS    D N  MT SG  +E+QG+AE   F++     +L+LA+    +
Sbjct: 194 EDSKAMTDMNVAMTGSGEFIEIQGTAEHRPFNRAELNTLLDLAEKGNKE 242


>gi|258616327|ref|ZP_05714097.1| ribonuclease PH/Ham1 protein [Enterococcus faecium DO]
          Length = 253

 Score =  321 bits (824), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 122/242 (50%), Positives = 163/242 (67%), Gaps = 3/242 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+  ++R++ L   V KY EGS +++FGDT ++ +AT+E+ VP ++R T  GW+T
Sbjct: 1   MRHDGRKAQELRKLELQTNVFKYPEGSVVIRFGDTTVICSATIEDSVPPFLRETGTGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+IGR+LR+VVDL  LG R II+DCDVIQ
Sbjct: 61  AEYSMLPRATSTRNRRESSKGKLSGRTMEIQRLIGRSLRAVVDLEKLGERSIIVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   ++ +     K      +K H+AA+S G+L  G  + DLDY
Sbjct: 121 ADGGTRTASITGAFVALKLAIEKL--LREKELSEDPIKEHLAAVSVGILPDGTCVTDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS   VD N VMT+SG  VE+QG+ E ATF  +    ML   K+ I DLIK QK  + 
Sbjct: 179 QEDSAALVDMNLVMTESGKFVEIQGTGEEATFDGEQLNEMLFFGKNAIEDLIKEQKHALL 238

Query: 240 NE 241
            E
Sbjct: 239 TE 240


>gi|85859450|ref|YP_461652.1| ribonuclease PH [Syntrophus aciditrophicus SB]
 gi|123516627|sp|Q2LTS3|RNPH_SYNAS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|85722541|gb|ABC77484.1| ribonuclease PH [Syntrophus aciditrophicus SB]
          Length = 240

 Score =  321 bits (824), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 114/242 (47%), Positives = 169/242 (69%), Gaps = 2/242 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R E+++RE+ +TR   K+ +GS L++ GDT ++ TA LE KVP ++RN+  GW+T
Sbjct: 1   MRKNRRHEDELREVKITRNYLKHPQGSVLIEVGDTKVICTAALEAKVPPFLRNSGKGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP +T  R +RE+V G  GGR+ EIQR+IGR+LR+V DL +LG   + IDCDVIQ
Sbjct: 61  AEYAMLPMATQERNQRESVRGHIGGRTHEIQRLIGRSLRAVTDLDSLGENTVYIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG++VAL D  + M++       +  ++ +V+A+S G++ G  ++DL+Y 
Sbjct: 121 ADGGTRTASITGSFVALVDLFRKMKE--KGICETMPIRDYVSAVSVGVVDGQLLLDLEYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  DVD N VMT +G  +EVQG+AER  F +D   AM+ LA   I  L ++Q++++  
Sbjct: 179 EDSRADVDMNVVMTGAGEFIEVQGTAERVPFGRDRLTAMVELAGRGIRKLTEVQREILGG 238

Query: 241 EV 242
           ++
Sbjct: 239 QI 240


>gi|332970986|gb|EGK09959.1| tRNA nucleotidyltransferase [Kingella kingae ATCC 23330]
          Length = 242

 Score =  321 bits (824), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 116/233 (49%), Positives = 162/233 (69%), Gaps = 2/233 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  N++REI +T     +A+GS L++ G+T ++ TAT++E VP ++R    GW+TAEYGM
Sbjct: 8   RAANELREIRITPNFLPHADGSVLIECGNTKVICTATIDENVPPFLRGKNQGWVTAEYGM 67

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST +R+KREA +G+Q GR+QEIQR+IGR+LR+ VD+  LG RQI+IDCDVIQADGGT
Sbjct: 68  LPASTQSRMKREAAAGKQSGRTQEIQRLIGRSLRACVDMQKLGERQILIDCDVIQADGGT 127

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTA+ITGA+VAL   +Q M   ++       L G VAAIS G++ G P++DLDY EDS  
Sbjct: 128 RTASITGAFVALKIAVQKM--LNDGRLTDTPLMGSVAAISVGVVGGVPLLDLDYPEDSGC 185

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D D N VM ++  I+E+QG+AE A F  D    ++ L +  I +L + Q+  +
Sbjct: 186 DSDVNLVMLNAEKIIEIQGTAEGAAFGLDELQQLIALGQKGIRELTEWQEKAV 238


>gi|121635173|ref|YP_975418.1| ribonuclease PH [Neisseria meningitidis FAM18]
 gi|161870362|ref|YP_001599532.1| ribonuclease PH [Neisseria meningitidis 053442]
 gi|218768484|ref|YP_002342996.1| ribonuclease PH [Neisseria meningitidis Z2491]
 gi|304387097|ref|ZP_07369348.1| tRNA nucleotidyltransferase [Neisseria meningitidis ATCC 13091]
 gi|21759416|sp|Q9JTN2|RNPH_NEIMA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228298|sp|A1KUT9|RNPH_NEIMF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|189043768|sp|A9M0T5|RNPH_NEIM0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|120866879|emb|CAM10638.1| ribonuclease PH [Neisseria meningitidis FAM18]
 gi|121052492|emb|CAM08831.1| ribonuclease PH [Neisseria meningitidis Z2491]
 gi|161595915|gb|ABX73575.1| ribonuclease PH [Neisseria meningitidis 053442]
 gi|304338846|gb|EFM04949.1| tRNA nucleotidyltransferase [Neisseria meningitidis ATCC 13091]
 gi|308389647|gb|ADO31967.1| ribonuclease PH [Neisseria meningitidis alpha710]
 gi|319410733|emb|CBY91115.1| ribonuclease PH (RNase PH; tRNA nucleotidyltransferase) [Neisseria
           meningitidis WUE 2594]
 gi|325132653|gb|EGC55339.1| ribonuclease PH [Neisseria meningitidis M6190]
 gi|325134681|gb|EGC57321.1| ribonuclease PH [Neisseria meningitidis M13399]
 gi|325138569|gb|EGC61132.1| ribonuclease PH [Neisseria meningitidis ES14902]
 gi|325198624|gb|ADY94080.1| ribonuclease PH [Neisseria meningitidis G2136]
 gi|325201806|gb|ADY97260.1| ribonuclease PH [Neisseria meningitidis M01-240149]
 gi|325205751|gb|ADZ01204.1| ribonuclease PH [Neisseria meningitidis M04-240196]
 gi|325208441|gb|ADZ03893.1| ribonuclease PH [Neisseria meningitidis NZ-05/33]
          Length = 242

 Score =  321 bits (824), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 117/239 (48%), Positives = 171/239 (71%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+S R  + +R+I +T     + +GSCL++ G+T ++ TA+++E VP ++R    GW+T
Sbjct: 5   IRIS-RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVT 63

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQ
Sbjct: 64  AEYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL   +  +   S+       ++  VAA+S G++ G P++DLDY 
Sbjct: 124 ADGGTRTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSVGVVNGVPLLDLDYP 181

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT SG I+E+QG+AE A FS D    ++ LA+  I +L++ Q++ +S
Sbjct: 182 EDSGCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALS 240


>gi|196230861|ref|ZP_03129722.1| ribonuclease PH [Chthoniobacter flavus Ellin428]
 gi|196225202|gb|EDY19711.1| ribonuclease PH [Chthoniobacter flavus Ellin428]
          Length = 256

 Score =  321 bits (823), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 115/241 (47%), Positives = 157/241 (65%), Gaps = 4/241 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GWI 59
           R  GR+ +Q+R IS T  ++ ++ GS LV  G+T ++ +A +EE +P W++  K   GW+
Sbjct: 3   RNDGRKNDQLRPISFTPNIAPHSTGSVLVAAGNTRVICSAMIEESIPNWMKFQKVPGGWL 62

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           TAEY MLP ST  R +R++  GR  GRS EIQR+IGR+LR+VVDL  LG R + IDCDV+
Sbjct: 63  TAEYSMLPYSTLERKQRDSAKGRIDGRSVEIQRLIGRSLRAVVDLDLLGPRTLCIDCDVL 122

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTRTA+ITGA VA    ++ + +   K      +K  VAA+S G++ G P++DL+Y
Sbjct: 123 QADGGTRTASITGACVAASLAVEKLIE--KKLLTKSPIKQLVAAVSVGVVNGEPMLDLNY 180

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED    VD N VMT +G  VEVQGS E  TFS+    AM+ L K  I +LI  Q+  IS
Sbjct: 181 LEDKDASVDMNLVMTANGQFVEVQGSGEEQTFSESELAAMMTLGKKGIGELIAAQRAAIS 240

Query: 240 N 240
           +
Sbjct: 241 S 241


>gi|15604475|ref|NP_220993.1| ribonuclease PH [Rickettsia prowazekii str. Madrid E]
 gi|6226021|sp|Q9ZCT5|RNPH_RICPR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|3861169|emb|CAA15069.1| RIBONUCLEASE PH (rph) [Rickettsia prowazekii]
 gi|292572257|gb|ADE30172.1| Ribonuclease PH [Rickettsia prowazekii Rp22]
          Length = 240

 Score =  321 bits (823), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 130/238 (54%), Positives = 171/238 (71%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ NQ+R ISL       AEGSCL+K G+TH++ +AT E  VP ++R    GWIT
Sbjct: 1   MRQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGM+P ST +R+KREA  G+QGGR+QEIQR+IGRA+R V++L  LG RQIIIDCDVI 
Sbjct: 61  AEYGMIPGSTSHRIKREAALGKQGGRTQEIQRLIGRAMRCVINLQKLGERQIIIDCDVIN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG++VALH  ++ +     +      L   +AAISCG+  G  ++DLDY 
Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSLMK--KRILKVNPLISQIAAISCGIYKGNAVLDLDYL 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  +VD+NFV   +G+++EVQG+AE+  FS++ F AML LAK  + +L KLQ  V+
Sbjct: 179 EDSDAEVDSNFVFACNGNLIEVQGTAEKEPFSEEQFLAMLKLAKSGVVELFKLQNQVL 236


>gi|254805268|ref|YP_003083489.1| ribonuclease PH [Neisseria meningitidis alpha14]
 gi|254668810|emb|CBA06795.1| ribonuclease PH [Neisseria meningitidis alpha14]
 gi|325136604|gb|EGC59205.1| ribonuclease PH [Neisseria meningitidis M0579]
          Length = 242

 Score =  321 bits (823), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 115/234 (49%), Positives = 167/234 (71%), Gaps = 2/234 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  + +R+I +T     + +GSCL++ G+T ++ TA+++E VP ++R    GW+TAEYGM
Sbjct: 9   RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVTAEYGM 68

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADGGT
Sbjct: 69  LPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGGT 128

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTA+ITGA+VAL   +  +   S+       ++  VAA+S G++ G P++DLDY EDS  
Sbjct: 129 RTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDSGC 186

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D D N VMT SG I+E+QG+AE A FS D    ++ LA+  I +L++ Q++ +S
Sbjct: 187 DSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALS 240


>gi|103485749|ref|YP_615310.1| ribonuclease PH [Sphingopyxis alaskensis RB2256]
 gi|123380170|sp|Q1GWJ5|RNPH_SPHAL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|98975826|gb|ABF51977.1| RNAse PH [Sphingopyxis alaskensis RB2256]
          Length = 238

 Score =  320 bits (822), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 124/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +QMR I++    + +AEGS LV FG+T +L TA++EEKVP ++R    GW+T
Sbjct: 1   MRPSGRAADQMRPIAIETNFTIHAEGSVLVSFGNTRVLVTASVEEKVPPFLRGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQ
Sbjct: 61  AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDMQKLGERQIVIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GAWVAL   +  + +   K      +   VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASISGAWVALRLAVDKLIEA--KQLTEDPIVDSVAAISCGIYKGTPVLDLDYD 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  + D NFV+T  G IVEVQ SAE AT+ ++    +L LA+    ++   Q   + 
Sbjct: 179 EDSVAEADGNFVLTGKGQIVEVQASAEGATYDEEGLLRLLRLARIGCGEIFAAQAKAVG 237


>gi|119503532|ref|ZP_01625615.1| ribonuclease PH [marine gamma proteobacterium HTCC2080]
 gi|119460594|gb|EAW41686.1| ribonuclease PH [marine gamma proteobacterium HTCC2080]
          Length = 243

 Score =  320 bits (822), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 115/238 (48%), Positives = 159/238 (66%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +++R I+  R  + +AEGS LV FG T +L TA+L   VP ++R    GW+TA
Sbjct: 7   RPSGRALDELRAITFERNFTCHAEGSVLVSFGQTRVLCTASLTPGVPGFLRGKGQGWLTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRSTG+R+ REA  G+Q GR+ EIQR+IGR+LR+ +DL ALG   + +DCDVIQA
Sbjct: 67  EYGMLPRSTGSRMNREASRGKQSGRTVEIQRLIGRSLRAAIDLKALGENTLTLDCDVIQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+I+GA VA+ D L  ++   +    S  LK  + A+S G+  G  ++DLDY E
Sbjct: 127 DGGTRTASISGACVAVVDALNTLQRKQSL--QSDPLKFLIGAVSVGVWKGQAVLDLDYAE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DST D D N V+ + G ++EVQG+AE A F +    +ML+LA      +I  Q++ +S
Sbjct: 185 DSTADTDMNVVVAEGGGLIEVQGTAEGAAFERAELNSMLDLAVAGGEIIISKQREALS 242


>gi|241760285|ref|ZP_04758380.1| tRNA nucleotidyltransferase [Neisseria flavescens SK114]
 gi|241319163|gb|EER55641.1| tRNA nucleotidyltransferase [Neisseria flavescens SK114]
          Length = 242

 Score =  320 bits (822), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 115/234 (49%), Positives = 167/234 (71%), Gaps = 2/234 (0%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
           GR  + +R I +T     +A+GSCL++ G+T ++ TA+++E VP ++R  + GW+TAEYG
Sbjct: 8   GRAADSLRNIKITPNFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKEQGWVTAEYG 67

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           MLP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADGG
Sbjct: 68  MLPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGG 127

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
           TRTA+ITGA+VAL   +  +   S+       ++  VAA+S G++ G P++DLDY EDS 
Sbjct: 128 TRTASITGAYVALQIAVDKL--LSDGLISENPIREAVAAVSAGVVGGVPLLDLDYPEDSG 185

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            D D N +MT SG I+E+QG+AE A FS +    ++ LA   IA+L++ Q+  +
Sbjct: 186 CDSDVNIIMTASGKIIEIQGTAEGAPFSIEELGKLIALAHKGIAELVQHQQAAL 239


>gi|254475610|ref|ZP_05088996.1| ribonuclease PH [Ruegeria sp. R11]
 gi|214029853|gb|EEB70688.1| ribonuclease PH [Ruegeria sp. R11]
          Length = 227

 Score =  320 bits (822), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 122/227 (53%), Positives = 161/227 (70%), Gaps = 2/227 (0%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           MR +S+    +K+AEGSCL+K GDTH+L TAT+E++VP +I+ T  GW+TAEYGMLPR+T
Sbjct: 1   MRAVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGTGLGWVTAEYGMLPRAT 60

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
             R++REA  G+QGGR+ EIQR+IGRALR+ VD  ALG RQI IDCDV+QADGGTR A+I
Sbjct: 61  NTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRVALGERQISIDCDVLQADGGTRCASI 120

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
           TG WVAL   +  +    +       L   VAA+SCG+  G P++DLDY EDS   VD N
Sbjct: 121 TGGWVALRLAVNKLMKAGDVTI--DPLVDPVAAVSCGIYAGQPVLDLDYPEDSEAGVDGN 178

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           F+MT SG ++EVQ SAE + FS+D    +++LA    A+L ++QK  
Sbjct: 179 FIMTGSGKLIEVQMSAEGSVFSRDQMNELMDLATKGTAELAEIQKAA 225


>gi|163856581|ref|YP_001630879.1| ribonuclease PH [Bordetella petrii DSM 12804]
 gi|163260309|emb|CAP42611.1| ribonuclease PH [Bordetella petrii]
          Length = 246

 Score =  320 bits (822), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 121/238 (50%), Positives = 167/238 (70%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R  SL R  ++YAEGS LV+ G+TH+L TA++ +KVP +++    GW+TA
Sbjct: 11  RPSGRAVDQLRPFSLQRGYTRYAEGSVLVRAGNTHVLCTASVLDKVPPFLKGRGEGWVTA 70

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V D+ ALG R + +DCDV+QA
Sbjct: 71  EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMKALGERTLHLDCDVLQA 130

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+ITGAWVA  D +  +    +    +  ++  VAA+S GM+ G P++DLDY E
Sbjct: 131 DGGTRCASITGAWVAAADAVALLMQRGDL--AANPIRDAVAAVSVGMVAGRPVLDLDYQE 188

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VMT +G  VEVQG+ E ATF++    AML LA+  IA L++ Q++ ++
Sbjct: 189 DSACDADVNVVMTGAGAFVEVQGTGEGATFARSELDAMLGLAEQGIAQLVRAQREALA 246


>gi|332159681|ref|YP_004296258.1| ribonuclease PH [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|318603777|emb|CBY25275.1| ribonuclease PH [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325663911|gb|ADZ40555.1| ribonuclease PH [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 238

 Score =  320 bits (822), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 118/240 (49%), Positives = 158/240 (65%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +         +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNKLVASGKL--KANPMKGLVAAVSVGIVKGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +    +L LA+  I  +   QK  +  
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARGGIETIFLAQKAALEQ 238


>gi|325128546|gb|EGC51419.1| ribonuclease PH [Neisseria meningitidis N1568]
 gi|325143439|gb|EGC65766.1| ribonuclease PH [Neisseria meningitidis M01-240013]
          Length = 242

 Score =  320 bits (822), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 115/234 (49%), Positives = 167/234 (71%), Gaps = 2/234 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  + +R+I +T     + +GSCL++ G+T ++ TA+++E VP ++R    GW+TAEYGM
Sbjct: 9   RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVTAEYGM 68

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADGGT
Sbjct: 69  LPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGGT 128

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTA+ITGA+VAL   +  +   S+       ++  VAA+S G++ G P++DLDY EDS  
Sbjct: 129 RTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDSGC 186

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D D N VMT SG I+E+QG+AE A FS D    ++ LA+  I +L++ Q++ +S
Sbjct: 187 DSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALS 240


>gi|114326689|ref|YP_743846.1| ribonuclease PH [Granulibacter bethesdensis CGDNIH1]
 gi|114314863|gb|ABI60923.1| ribonuclease PH [Granulibacter bethesdensis CGDNIH1]
          Length = 250

 Score =  320 bits (821), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 122/237 (51%), Positives = 163/237 (68%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  + +R +SL    + +AEGSCL++ G T +L TA+ E ++P ++R T  GW+TA
Sbjct: 10  RPSGRAADALRSVSLETGFAHHAEGSCLIRMGRTEVLCTASAEPRIPGFLRGTGKGWVTA 69

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGRALR+VVD  A+G   I +DCDV+ A
Sbjct: 70  EYGMLPRATHKRGDREAARGKQSGRTQEIQRLIGRALRAVVDRDAMGEMSITLDCDVLNA 129

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A++TGA+VAL      M         +  L G VAA+SCG++ G P++DLDY E
Sbjct: 130 DGGTRCASVTGAYVALSLAFHKMVKAG--VLKAVPLHGQVAAVSCGVVGGQPVLDLDYIE 187

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  + D+NFV+TD+G IVE+QG+AE A FS+  F AML LA+   A L  +Q+D I
Sbjct: 188 DSGAEADSNFVLTDAGGIVEIQGTAEGAPFSEADFSAMLGLARQGTAQLFTMQRDAI 244


>gi|329114777|ref|ZP_08243534.1| Ribonuclease PH [Acetobacter pomorum DM001]
 gi|326695908|gb|EGE47592.1| Ribonuclease PH [Acetobacter pomorum DM001]
          Length = 267

 Score =  320 bits (821), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 116/239 (48%), Positives = 159/239 (66%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ +QMR I++    + +AEGS L++ G T +L TA++E +VP ++R    GW+T
Sbjct: 24  MRPSGRQPDQMRPITIETGFAHHAEGSALIRVGGTEVLCTASIENRVPPFLRGKGTGWVT 83

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V DL+ALG   I +DCDV+ 
Sbjct: 84  AEYGMLPRATHTRGNREAAKGKQSGRTQEIQRLIGRSLRAVTDLNALGEMSITLDCDVLN 143

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITGAWVAL   L  +   +        L+G VAA+SCG+     ++DLDY 
Sbjct: 144 ADGGTRCASITGAWVALRLALGKL--VATNVLPRLPLRGQVAAVSCGLTTEGAVLDLDYV 201

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS+   D NFV+T    IVE+QG+AE A F++D F  +  LA+  + +L + Q   + 
Sbjct: 202 EDSSASADTNFVLTADRRIVEIQGTAESAPFTEDAFDNLFALARKGVTELFEAQIAAVE 260


>gi|319948537|ref|ZP_08022668.1| ribonuclease PH [Dietzia cinnamea P4]
 gi|319437784|gb|EFV92773.1| ribonuclease PH [Dietzia cinnamea P4]
          Length = 261

 Score =  320 bits (821), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 110/238 (46%), Positives = 157/238 (65%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R++++TR  + +  GS LV FG T ++ TA++ E VP W + +  GW+TA
Sbjct: 8   RADGRGVDELRDVTITRGFTSHPAGSVLVTFGQTRVMCTASVTEGVPRWRKGSGLGWLTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V G+ GGR+ EI R++GR+LR+ +DLSALG   I +DCDV+QA
Sbjct: 68  EYAMLPAATHERSGRESVRGKVGGRTHEISRLVGRSLRACIDLSALGENTIALDCDVLQA 127

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  ++           L G VAA+S G++ G+ + DL Y E
Sbjct: 128 DGGTRTAAITGAYVALADAITWLQSSGAV--TGNPLTGAVAAVSVGVVDGHVLCDLPYEE 185

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD G ++EVQG+AE A F +D   AML+ A+     L  LQ++ ++
Sbjct: 186 DSRAEVDMNVVCTDGGKLIEVQGTAEGAAFGRDVLDAMLDSAQAGCERLFALQREALA 243


>gi|183601855|ref|ZP_02963224.1| probable ribonuclease PH [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219682769|ref|YP_002469152.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis AD011]
 gi|183218740|gb|EDT89382.1| probable ribonuclease PH [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219620419|gb|ACL28576.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis AD011]
 gi|289178068|gb|ADC85314.1| Ribonuclease PH [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 246

 Score =  320 bits (821), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 104/228 (45%), Positives = 145/228 (63%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R + +TR  +   EGS L++ G+T ++ TAT  + VP W +++  GW+TA
Sbjct: 5   RADGRAYDELRPVRITRAFTDVPEGSVLIECGNTRVMCTATFTDTVPRWRKDSGLGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+ GGR+ EI R+IGR LR V+D+ ALG   I +DCDV+QA
Sbjct: 65  EYSMLPRATAQRTDRESVRGKVGGRTHEISRLIGRCLRGVIDMKALGENTIQMDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L   +       +  VL   V+A+S G++ G P++DL Y E
Sbjct: 125 DGGTRTASITGAHVALVDALNWAKQNGKIKSVKNVLLDSVSAVSVGVIDGEPMLDLPYVE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
           DS    D N  MT SG  VE+QG+AE   FS++    +L+LA     +
Sbjct: 185 DSRAMTDMNVAMTGSGKFVEIQGTAEHRPFSRNELGVLLDLATKGNRE 232


>gi|320534625|ref|ZP_08035070.1| ribonuclease PH [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133145|gb|EFW25648.1| ribonuclease PH [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 268

 Score =  320 bits (820), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 105/242 (43%), Positives = 146/242 (60%), Gaps = 2/242 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R +++TR    +AEGS LV FG T +L  A+  E VP W + +  GW+TA
Sbjct: 8   RKDGRAVDELRPVTMTRHWLDHAEGSVLVSFGRTRVLCAASFTEGVPRWRKGSGEGWVTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+   R  RE+V G+ GGR+ EI R+IGR+LR ++D++ALG   I +DCDV+QA
Sbjct: 68  EYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRSLRGIIDVAALGENTIALDCDVLQA 127

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS--QVLKGHVAAISCGMLCGYPIVDLDY 179
           DGGTRTAAITGA+VAL D +    +            L   ++AIS G++ G P +DL Y
Sbjct: 128 DGGTRTAAITGAYVALADAVAWGTERGLIKARPGKPALSDSLSAISVGIIDGVPCLDLPY 187

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED     D N V T  G  +EVQG+AE A F +     +L+LA    + L  LQ+  ++
Sbjct: 188 EEDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFDRSELGELLDLAAVGNSRLAALQRQALA 247

Query: 240 NE 241
             
Sbjct: 248 GP 249


>gi|15677352|ref|NP_274507.1| ribonuclease PH [Neisseria meningitidis MC58]
 gi|21759417|sp|Q9JYN5|RNPH_NEIMB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|7226741|gb|AAF41855.1| ribonuclease PH [Neisseria meningitidis MC58]
 gi|316986046|gb|EFV64983.1| ribonuclease PH [Neisseria meningitidis H44/76]
 gi|325140644|gb|EGC63162.1| ribonuclease PH [Neisseria meningitidis CU385]
 gi|325199896|gb|ADY95351.1| ribonuclease PH [Neisseria meningitidis H44/76]
          Length = 242

 Score =  320 bits (820), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 117/239 (48%), Positives = 170/239 (71%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+S R  + +R+I +T     + +GSCL++ G+T ++ TA+++E VP ++R    GW+T
Sbjct: 5   IRIS-RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVT 63

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP ST +R+ REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQ
Sbjct: 64  AEYGMLPASTASRMLREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQ 123

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL   +  +   S+       ++  VAA+S G++ G P++DLDY 
Sbjct: 124 ADGGTRTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSVGVVNGVPLLDLDYP 181

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D D N VMT SG I+E+QG+AE A FS D    ++ LA+  I +L++ Q++ +S
Sbjct: 182 EDSGCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNALS 240


>gi|311031422|ref|ZP_07709512.1| ribonuclease PH [Bacillus sp. m3-13]
          Length = 253

 Score =  320 bits (820), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 109/239 (45%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR++NQ+REI +      + EGS L+  G+T ++ +AT+E++VP ++R    GWITA
Sbjct: 3   RTDGREQNQLREIEIITDYITHPEGSVLISVGNTKVICSATIEDRVPPFMRGGGKGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALRSVV+L  +G + I IDCDVIQA
Sbjct: 63  EYSMLPRATEKRTMRESTKGKVTGRTMEIQRLIGRALRSVVELDKIGEKTIWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYG 180
           DGGTRTA+ITGA+VA+    Q + +   K   S  +   +AA S G++  G  ++DL+Y 
Sbjct: 123 DGGTRTASITGAFVAMVLAFQKLVEA--KRIASLPVTDFLAATSVGVMKDGQALLDLNYI 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST  VD N +MT S  +VE+QG+ E +TF++     +L++A++ I  L+++QK  + 
Sbjct: 181 EDSTAQVDMNVIMTGSLDLVELQGTGEESTFTRKQLNELLDMAEEGILHLVEVQKKALG 239


>gi|291286002|ref|YP_003502818.1| ribonuclease PH [Denitrovibrio acetiphilus DSM 12809]
 gi|290883162|gb|ADD66862.1| ribonuclease PH [Denitrovibrio acetiphilus DSM 12809]
          Length = 236

 Score =  320 bits (820), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 111/239 (46%), Positives = 155/239 (64%), Gaps = 3/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ + +R++ + +    + EGS LV FGDT ++  A++ E VP ++R++  GW+T
Sbjct: 1   MR-NERKNDSLRKVEIIKDYISHPEGSVLVAFGDTKVICNASVSEGVPPFLRDSGTGWVT 59

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+Q GRSQEI R+IGR+LR+ VD   LG   + IDCDVIQ
Sbjct: 60  AEYAMLPRATHTRNQRESKRGKQDGRSQEISRLIGRSLRAAVDFEKLGENTVTIDCDVIQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG + AL+   + M            + G V+AIS G++ G P++DL+Y 
Sbjct: 120 ADGGTRTAAITGGFCALYMACEWM--IKQGMIAENPVTGMVSAISVGIVMGEPMLDLEYA 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  DVD N V+ D+  IVE+QGSAE+  F +D    ML+L    I +L  +QK VI 
Sbjct: 178 EDSIADVDMNLVVKDNAEIVEIQGSAEKVAFDRDLLNKMLDLGFKGIKELTDIQKQVIK 236


>gi|261365535|ref|ZP_05978418.1| tRNA nucleotidyltransferase [Neisseria mucosa ATCC 25996]
 gi|288565953|gb|EFC87513.1| tRNA nucleotidyltransferase [Neisseria mucosa ATCC 25996]
          Length = 246

 Score =  320 bits (820), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 116/234 (49%), Positives = 166/234 (70%), Gaps = 2/234 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  + +R+I +T     +A+GSCL++ G+T ++ TA+++E VP ++R    GW+TAEYGM
Sbjct: 9   RDADSLRDIKITPNFLPHADGSCLIECGNTKVICTASIDENVPPFLRGKGQGWVTAEYGM 68

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADGGT
Sbjct: 69  LPASTASRMRREAAAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGGT 128

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTA+ITGA+VAL   +  +   S+       ++  VAA+S G++ G P++DLDY EDS  
Sbjct: 129 RTASITGAFVALQIAVNKL--ISDDLISENPIREAVAAVSAGVVGGVPLLDLDYPEDSGC 186

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D D N VMT SG I+E+QG+AE A FS D    ++ LA+  IA+L   Q++ + 
Sbjct: 187 DSDVNIVMTASGKIIEIQGTAEGAPFSLDELGKLIALAQKGIAELTAHQQNALK 240


>gi|285017590|ref|YP_003375301.1| ribonuclease ph protein [Xanthomonas albilineans GPE PC73]
 gi|283472808|emb|CBA15313.1| hypothetical ribonuclease ph protein [Xanthomonas albilineans]
          Length = 241

 Score =  320 bits (820), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 117/228 (51%), Positives = 157/228 (68%), Gaps = 2/228 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR   Q+R + + R  +++AEGS LV FGDT +L  A+++ +VP ++R    GW+TA
Sbjct: 5   RPSGRTAEQLRPVRIERAFTRHAEGSVLVSFGDTRVLCNASVDNRVPGFLRGKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T +R +REA  G+QGGR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRATHSRSEREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +       +   V+ G VAA+S G+  G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALVDAVNWLRQRGELKK--PVVLGAVAAVSVGIYRGVPVLDLDYAE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
           DS  D D N VM D G  +E+QG+AE   F +D   A+L LA+  I +
Sbjct: 183 DSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELDALLGLAERGIGE 230


>gi|56550910|ref|YP_161749.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ZM4]
 gi|260753398|ref|YP_003226291.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|61215796|sp|Q5NRL6|RNPH_ZYMMO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|56542484|gb|AAV88638.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis ZM4]
 gi|258552761|gb|ACV75707.1| ribonuclease PH [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 237

 Score =  320 bits (820), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 161/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +Q+R +S+    +++AEGSCL+ FGDT +L TA+LEE++P W+R    GW+T
Sbjct: 1   MRPSGRTPDQLRSLSIETGFTRHAEGSCLISFGDTRVLVTASLEERLPSWLRGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+Q GR+QEIQR+IGR+LR+ +DL  LG RQI IDCDV+Q
Sbjct: 61  AEYGMLPRSTHSRTNREAARGKQSGRTQEIQRLIGRSLRAGIDLKKLGERQITIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+G WVAL   +  +            +   VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASISGGWVALRLAVNKLLASGQL--TEDPIISQVAAVSCGISQGVPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST + DANFVM     ++EVQ SAE A + ++    +L LA+     +   QK  ++
Sbjct: 179 EDSTAEADANFVMMGDSRLIEVQASAEGAPYDEEGLLRLLRLARMGCQQIFAEQKKAVA 237


>gi|329947440|ref|ZP_08294644.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328525190|gb|EGF52241.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 264

 Score =  320 bits (820), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 108/242 (44%), Positives = 148/242 (61%), Gaps = 2/242 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R +++TR    +AEGS LV FG T +L  A+  E VP W + +  GW+TA
Sbjct: 8   RKDGRAVDELRPVTMTRHWLDHAEGSVLVTFGRTRVLCAASFTEGVPRWRKGSGEGWVTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+   R  RE+V G+ GGR+ EI R+IGR+LR ++D+SALG   I +DCDV+QA
Sbjct: 68  EYAMLPRAGSERSGRESVRGKVGGRTHEISRLIGRSLRGIIDVSALGENTIALDCDVLQA 127

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS--QVLKGHVAAISCGMLCGYPIVDLDY 179
           DGGTRTAAITGA+VAL D +    +       S   VL   ++AIS G++ G P +DL Y
Sbjct: 128 DGGTRTAAITGAYVALADAVTWGTERGLIKARSGKPVLSDSLSAISVGIIDGVPCLDLPY 187

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED     D N V T  G  +EVQG+AE A F +    ++L+LA      L  LQ+  ++
Sbjct: 188 EEDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFDRSELGSLLDLAATGNTRLAALQRRALA 247

Query: 240 NE 241
             
Sbjct: 248 GP 249


>gi|118580726|ref|YP_901976.1| ribonuclease PH [Pelobacter propionicus DSM 2379]
 gi|118503436|gb|ABK99918.1| RNAse PH [Pelobacter propionicus DSM 2379]
          Length = 239

 Score =  320 bits (820), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 120/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R +GR    +R +++TR  +KYAEG+ LV+FGDT ++ TA++EE VP ++R    GW+T
Sbjct: 2   VRKNGRDSRALRPVAITRNFTKYAEGAVLVEFGDTRVICTASVEESVPSFLRGRGTGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+Q GR+ EIQR+IGR+LR+V DL+ALG R + +DCDV+Q
Sbjct: 62  AEYSMLPRATHTRSSREASKGKQSGRTLEIQRLIGRSLRAVTDLAALGERSVYLDCDVLQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D L  ++           L+  VAA+S G++ G  ++DLDY 
Sbjct: 122 ADGGTRTASITGAYVALADALATLKQ--RGLLERIPLREAVAAVSVGIVGGESLLDLDYD 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS+ +VD NFVMT S   VEVQG+AE   F+ +   AM +LA D I  L  LQ++ +  
Sbjct: 180 EDSSAEVDMNFVMTSSQRFVEVQGTAEVEPFTLEQMDAMRSLAMDGIQCLFDLQREALKG 239


>gi|126734415|ref|ZP_01750162.1| ribonuclease PH [Roseobacter sp. CCS2]
 gi|126717281|gb|EBA14145.1| ribonuclease PH [Roseobacter sp. CCS2]
          Length = 235

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 125/239 (52%), Positives = 172/239 (71%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ N+MRE+S+   V+ +AEGSCL+K G+TH+L TAT++E+VP +++N+  GW+T
Sbjct: 1   MRPSGRQTNEMREVSIETGVTMHAEGSCLIKCGNTHVLCTATIDERVPPFLKNSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA +G Q GR+QEIQR+IGR+LR+ VD  AL  RQI++DCDVIQ
Sbjct: 61  AEYGMLPRATNTRMRREAKNG-QSGRTQEIQRLIGRSLRAGVDRVALSERQIVVDCDVIQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +Q +    +    S  L   VAAISCG+  G  ++DLDY 
Sbjct: 120 ADGGTRCASITGGWVALKLAVQKLMKAGDVI--SDPLIDPVAAISCGIYAGQEVLDLDYP 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD NFVMT  G ++E+Q SAE +TF++     +++LA+  + +L  +Q   +S
Sbjct: 178 EDSEAGVDGNFVMTG-GKMIEIQMSAEGSTFTRAQMDGLVDLAEKGVGELTAIQLAAVS 235


>gi|225165849|ref|ZP_03727626.1| tRNA nucleotidyltransferase [Opitutaceae bacterium TAV2]
 gi|224799908|gb|EEG18360.1| tRNA nucleotidyltransferase [Opitutaceae bacterium TAV2]
          Length = 254

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 111/243 (45%), Positives = 155/243 (63%), Gaps = 4/243 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GWI 59
           R  GR+ +Q+R I+    ++ +A GS L  FG+T ++  AT+E KVP+W++  K   GW+
Sbjct: 6   RADGRRPDQLRPITFEANIAPHATGSVLASFGNTRVICAATIEPKVPLWMKQQKVPGGWL 65

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           TAEY +LP ST +R  R+   G+  GR+ EIQR+IGRALR+V+DLS LG   + IDCDV+
Sbjct: 66  TAEYSLLPYSTHDRKARDISKGKLDGRTVEIQRLIGRALRAVLDLSKLGENTLWIDCDVL 125

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTRTA+ITGA++A    LQ + D              +AAIS G+L G  ++DL Y
Sbjct: 126 QADGGTRTASITGAYLATRLALQKLLDTGKL--AENPFTDSIAAISVGILGGRELLDLPY 183

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED   +VDAN VMT  GH VEVQ S E ATF+ D   A+L LA+  + ++  LQ   ++
Sbjct: 184 TEDKDAEVDANIVMTGRGHFVEVQTSGEEATFTYDQLQALLGLAQKGLKEIAALQTAFLT 243

Query: 240 NEV 242
            ++
Sbjct: 244 RQL 246


>gi|308177068|ref|YP_003916474.1| tRNA nucleotidyltransferase [Arthrobacter arilaitensis Re117]
 gi|307744531|emb|CBT75503.1| tRNA nucleotidyltransferase [Arthrobacter arilaitensis Re117]
          Length = 244

 Score =  319 bits (819), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 114/240 (47%), Positives = 160/240 (66%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR   Q+R+I++TR  S  AEGS L++FG+T +L TA+  E VP W++    GW+T
Sbjct: 3   LRADGRGAAQLRDITITRGWSAQAEGSALIEFGNTRVLCTASFTEGVPRWLKGQGTGWVT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+  GR+ EI R+IGR+LR+VVD  ALG   I++DCDV+Q
Sbjct: 63  AEYAMLPRATNTRNSRESVKGKLSGRTHEISRLIGRSLRAVVDTKALGENTIVLDCDVLQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL + +          Q ++VL   VAAIS G++ G P++DL Y 
Sbjct: 123 ADGGTRTAAITGAYVALAEAIAWATSQGIVKQNAKVLTDSVAAISVGIIDGTPMLDLPYE 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   + D N V+T SG  VEVQG+AE   F +    A+L+LA    ++L ++Q++ + +
Sbjct: 183 EDVRAETDMNVVVTGSGDFVEVQGTAEGVPFKRAELDALLDLALGGTSELAEIQRETLGS 242


>gi|238750796|ref|ZP_04612294.1| Ribonuclease PH [Yersinia rohdei ATCC 43380]
 gi|238710940|gb|EEQ03160.1| Ribonuclease PH [Yersinia rohdei ATCC 43380]
          Length = 238

 Score =  319 bits (819), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 118/240 (49%), Positives = 160/240 (66%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +         +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNKLVASGKL--KANPMKGLVAAVSVGIVKGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  + D N VM + G ++EVQG+AE   FS +   A+L+LA+  I  +   QK  +  
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLALLDLARGGIETIFLAQKAALEQ 238


>gi|163737986|ref|ZP_02145402.1| heat-inducible transcription repressor [Phaeobacter gallaeciensis
           BS107]
 gi|161388602|gb|EDQ12955.1| heat-inducible transcription repressor [Phaeobacter gallaeciensis
           BS107]
          Length = 227

 Score =  319 bits (819), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 121/227 (53%), Positives = 160/227 (70%), Gaps = 2/227 (0%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           MR +S+    +K+AEGSCL+K GDTH+L TAT+E++VP +I+ +  GW+TAEYGMLPR+T
Sbjct: 1   MRAVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKGSGLGWVTAEYGMLPRAT 60

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
             R++REA  G+QGGR+ EIQR+IGRALR+ VD  ALG RQI IDCDV+QADGGTR A+I
Sbjct: 61  NTRMRREAAMGKQGGRTVEIQRLIGRALRAGVDRVALGERQISIDCDVLQADGGTRCASI 120

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
           TG WVAL   +  +            L   VAA+SCG+  G P++DLDY EDS   VD N
Sbjct: 121 TGGWVALRLAVNKLMKTGEVKI--DPLVDPVAAVSCGIYAGQPVLDLDYPEDSEAGVDGN 178

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           F+MT SG ++EVQ SAE + FS++    +++LA    A+L +LQK  
Sbjct: 179 FIMTGSGQLIEVQMSAEGSMFSREQMNTLMDLATKGTAELAELQKAA 225


>gi|188586564|ref|YP_001918109.1| RNAse PH [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351251|gb|ACB85521.1| RNAse PH [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 246

 Score =  319 bits (819), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 105/240 (43%), Positives = 157/240 (65%), Gaps = 3/240 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +++R + +     K+ EGS L+  GDT ++ +AT+E KVP +++    GW+T
Sbjct: 1   MREN-RKVDEIRPVKIETDFVKHPEGSVLITVGDTKVICSATIESKVPSFLKGEGKGWVT 59

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  REA  G+ GGR+QEIQR+IGR+LRS+V+L  LG R I +DCDVIQ
Sbjct: 60  AEYSMLPRATESRNIREAAKGKLGGRTQEIQRLIGRSLRSMVNLKKLGERTIWLDCDVIQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+V++   L  + +     +L   ++G++AAIS G++    ++DLD  
Sbjct: 120 ADGGTRTASITGAFVSMVLALNKLVEEKELSEL--PVEGYLAAISVGIVNDEIMLDLDGK 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   D D N   TD G  VE+QG+ E   FS++    ML+ A+  +  L+++Q   +S 
Sbjct: 178 EDFQADTDMNVAGTDKGEFVEIQGTGENHPFSKNEMEKMLSYAEKGMHALMEVQSQALSE 237


>gi|255263447|ref|ZP_05342789.1| ribonuclease PH [Thalassiobium sp. R2A62]
 gi|255105782|gb|EET48456.1| ribonuclease PH [Thalassiobium sp. R2A62]
          Length = 235

 Score =  319 bits (819), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 129/237 (54%), Positives = 172/237 (72%), Gaps = 4/237 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  ++MR I++   V+K+AEGSCL++ GDTH+L  AT+E++VP ++RN+  GW+T
Sbjct: 1   MRPSGRSIDEMRAITIETDVTKHAEGSCLIQCGDTHVLCAATVEDRVPPFMRNSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA +G Q GR+QEIQR+IGR+LR+ VD  ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATNTRMRREAKNG-QSGRTQEIQRLIGRSLRAGVDRVALGERQITVDCDVIQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +    +    S  L+  VAAISCG+  G  ++DLDY 
Sbjct: 120 ADGGTRCASITGGWVALKLAVNKLIKAGDII--SDPLETPVAAISCGIYAGQAVLDLDYP 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS   VD NFVMT S  ++EVQ SAE ATFS+D    +++LA+  +A+L +LQ D 
Sbjct: 178 EDSEAGVDGNFVMTGS-QMIEVQMSAEGATFSRDQMNELVDLAEKGVAELSRLQIDA 233


>gi|255659135|ref|ZP_05404544.1| tRNA nucleotidyltransferase [Mitsuokella multacida DSM 20544]
 gi|260848582|gb|EEX68589.1| tRNA nucleotidyltransferase [Mitsuokella multacida DSM 20544]
          Length = 248

 Score =  319 bits (818), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 112/242 (46%), Positives = 153/242 (63%), Gaps = 5/242 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R  + +R   + R   KY  GS L++ G+T ++  A++E++VP ++R T  GWI A
Sbjct: 3   RPDRRTADALRPYEMHRHFQKYPAGSVLIEMGNTKVICAASIEDRVPFFLRGTGEGWIAA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP +T  R +REAV G+Q GR+QEI+R+IGR+LRSVVD  ALG R I+IDCDVIQA
Sbjct: 63  EYSLLPSATETRTQREAVRGKQSGRTQEIERLIGRSLRSVVDTKALGERTIMIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYG 180
           DGGTRTA+ITGA+VAL +      +    F     +K  ++AIS G+   G PI+DL Y 
Sbjct: 123 DGGTRTASITGAFVALVEACASFYEKGKIF----PVKDFLSAISVGVSHEGVPILDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VMT  G  VEVQG+ E   F+ +    +L L +    +LI  +KDV+  
Sbjct: 179 EDSRAIVDMNVVMTGVGRFVEVQGTGEGRPFTHEELGELLALGEKGCRELISYEKDVLGG 238

Query: 241 EV 242
           E+
Sbjct: 239 EL 240


>gi|330813340|ref|YP_004357579.1| ribonuclease PH [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486435|gb|AEA80840.1| ribonuclease PH [Candidatus Pelagibacter sp. IMCC9063]
          Length = 237

 Score =  319 bits (818), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 121/240 (50%), Positives = 168/240 (70%), Gaps = 3/240 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R+  ++R+I +T    K A+ SCL+K GDTH++ TA++EEKVP W++ +  GW+T
Sbjct: 1   MRND-RKNLELRKIEITTDFIKNADASCLIKSGDTHVVCTASIEEKVPRWLKGSGKGWVT 59

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R++RE+  G+ GGR+ EIQR+IGR+LR+ ++L  LG   I IDCDV+Q
Sbjct: 60  AEYGMLPRSTHERMRRESSVGKVGGRTSEIQRLIGRSLRASMNLKLLGEYLITIDCDVLQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +VAL  C+  M     K      +K +VAAISCG++ G  ++DLDY 
Sbjct: 120 ADGGTRTASITGGFVALKKCIDLM--IKRKQINHNPIKSYVAAISCGIVNGEFLMDLDYE 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  DVD+N+VM D G I+E+Q + E+ T S++ F  ML  +K  IA++I LQK  +S 
Sbjct: 178 EDSQADVDSNYVMNDKGDIIELQLTGEQTTCSEEEFMKMLRHSKSSIAEIITLQKKALSE 237


>gi|171741378|ref|ZP_02917185.1| hypothetical protein BIFDEN_00461 [Bifidobacterium dentium ATCC
           27678]
 gi|283455270|ref|YP_003359834.1| ribonuclease PH [Bifidobacterium dentium Bd1]
 gi|306823668|ref|ZP_07457043.1| tRNA nucleotidyltransferase [Bifidobacterium dentium ATCC 27679]
 gi|309803034|ref|ZP_07697135.1| tRNA nucleotidyltransferase [Bifidobacterium dentium JCVIHMP022]
 gi|171276992|gb|EDT44653.1| hypothetical protein BIFDEN_00461 [Bifidobacterium dentium ATCC
           27678]
 gi|283101904|gb|ADB09010.1| rph Ribonuclease PH [Bifidobacterium dentium Bd1]
 gi|304553375|gb|EFM41287.1| tRNA nucleotidyltransferase [Bifidobacterium dentium ATCC 27679]
 gi|308220501|gb|EFO76812.1| tRNA nucleotidyltransferase [Bifidobacterium dentium JCVIHMP022]
          Length = 254

 Score =  319 bits (818), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 108/229 (47%), Positives = 154/229 (67%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R + +TRR +   EGS L++ G+T ++ TAT    VP W +++  GW+T
Sbjct: 14  IRADGRKVDELRPVRITRRFTDVPEGSVLIECGNTRVMCTATFTSGVPRWRKDSGLGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  RE+V G+ GGR+ EI R+IGR LR VVD+ ALG  Q+ IDCDV+Q
Sbjct: 74  AEYAMLPRATADRTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENQVQIDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL D ++  E   +     +VLK  V+A+S G++ G P++DL Y 
Sbjct: 134 ADGGTRTASITGAYVALVDAMRWAERHRHIKSADRVLKDCVSAVSVGVINGKPMLDLPYI 193

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
           EDS    D N  MT SG  +E+QG+AE   FS+    A+L+LA+    +
Sbjct: 194 EDSQAMTDMNVAMTGSGEFIEIQGTAEHRPFSRAELNALLDLAEQGNKE 242


>gi|28198628|ref|NP_778942.1| ribonuclease PH [Xylella fastidiosa Temecula1]
 gi|71274728|ref|ZP_00651016.1| Ribonuclease PH [Xylella fastidiosa Dixon]
 gi|71899591|ref|ZP_00681746.1| Ribonuclease PH [Xylella fastidiosa Ann-1]
 gi|71900258|ref|ZP_00682395.1| Ribonuclease PH [Xylella fastidiosa Ann-1]
 gi|170730030|ref|YP_001775463.1| ribonuclease PH [Xylella fastidiosa M12]
 gi|182681311|ref|YP_001829471.1| ribonuclease PH [Xylella fastidiosa M23]
 gi|32129976|sp|Q87DG3|RNPH_XYLFT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736953|sp|B2IA38|RNPH_XYLF2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736954|sp|B0U6W7|RNPH_XYLFM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|28056712|gb|AAO28591.1| ribonuclease PH [Xylella fastidiosa Temecula1]
 gi|71164460|gb|EAO14174.1| Ribonuclease PH [Xylella fastidiosa Dixon]
 gi|71729971|gb|EAO32065.1| Ribonuclease PH [Xylella fastidiosa Ann-1]
 gi|71730633|gb|EAO32709.1| Ribonuclease PH [Xylella fastidiosa Ann-1]
 gi|167964823|gb|ACA11833.1| tRNA nucleotidyltransferase [Xylella fastidiosa M12]
 gi|182631421|gb|ACB92197.1| ribonuclease PH [Xylella fastidiosa M23]
 gi|307579762|gb|ADN63731.1| ribonuclease PH [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 241

 Score =  319 bits (818), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 121/238 (50%), Positives = 164/238 (68%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGRQ + +R + + R  + +AEGS LV FG+T ++ TA++E KVP+++RN   GWITA
Sbjct: 5   RPSGRQADALRPVRIERAFTCHAEGSVLVSFGNTLVVCTASVEAKVPVFLRNKGEGWITA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R +REA  G+Q GR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRSTHTRSEREAARGKQAGRTLEIQRLIGRALRTCVDRTALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D ++ +E      +    L G VAA+S G+  G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALVDAVRCLEQRGQLKK--SPLIGAVAAVSVGIYRGMPVLDLDYPE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VM D G  +E+QG+AE+  F +     +L LA+   A L  +Q++ ++
Sbjct: 183 DSDCDTDMNVVMNDEGGFIELQGTAEQQAFRRGELDMLLALAERGTAMLFDIQREALA 240


>gi|116626750|ref|YP_828906.1| ribonuclease PH [Candidatus Solibacter usitatus Ellin6076]
 gi|122251374|sp|Q01NZ9|RNPH_SOLUE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|116229912|gb|ABJ88621.1| RNAse PH [Candidatus Solibacter usitatus Ellin6076]
          Length = 238

 Score =  318 bits (817), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 114/240 (47%), Positives = 157/240 (65%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R   Q+R + +T      AEGS L+K G+TH+L  AT+E+ VP ++RNT  GW+T
Sbjct: 1   MRTDNRTAGQLRPVQITTGCLMTAEGSALIKVGNTHVLCAATIEDTVPPFLRNTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE   GR  GR+ EIQR+IGR++RS VD+S+ G R +IIDCDVIQ
Sbjct: 61  AEYSMLPRATAKRTPREVTKGRPSGRTHEIQRLIGRSMRSAVDMSSFGERTLIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA+    + + +   +   +  ++ +VAA S G++ G P++DL Y 
Sbjct: 121 ADGGTRTASITGAFVAMALAFRQLIEY--RALKANPIRDYVAATSVGLVGGIPMLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  DVD N VMT  G  VEVQ +AE + F       +  LA+  IA L+++QK++I  
Sbjct: 179 EDSQADVDMNVVMTGGGKFVEVQATAEHSAFDDAQMAELTELARTGIAQLVRMQKEIIEG 238


>gi|225175207|ref|ZP_03729203.1| ribonuclease PH [Dethiobacter alkaliphilus AHT 1]
 gi|225169383|gb|EEG78181.1| ribonuclease PH [Dethiobacter alkaliphilus AHT 1]
          Length = 239

 Score =  318 bits (817), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 116/238 (48%), Positives = 162/238 (68%), Gaps = 4/238 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ ++MR + +T    KY EGS L++ GDT ++ TA++EEKVP ++R    GW+T
Sbjct: 1   MRVDGRRTDEMRPLKITPEFLKYPEGSVLIEVGDTRVICTASVEEKVPPFLRGENKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE   G+  GRS EIQR+IGRALRSVVDL ALG R + +DCDV+Q
Sbjct: 61  AEYAMLPRATQIRTMRE--RGKISGRSSEIQRLIGRALRSVVDLKALGERTVWVDCDVVQ 118

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+G++VAL+  L  +       ++   +  ++AA S G++    ++DL + 
Sbjct: 119 ADGGTRTAAISGSFVALYLALSKLVAAGTLSEV--PVTDYLAATSIGIVDDKLMLDLAFS 176

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  DVD N VMT SG+IVEVQG+AE A FS+     M++LA   I +++  QK ++
Sbjct: 177 EDSKADVDMNVVMTGSGNIVEVQGTAEGAAFSRQAMDEMMDLAAKGIDEIVDYQKRLL 234


>gi|296533566|ref|ZP_06896135.1| tRNA nucleotidyltransferase [Roseomonas cervicalis ATCC 49957]
 gi|296266103|gb|EFH12159.1| tRNA nucleotidyltransferase [Roseomonas cervicalis ATCC 49957]
          Length = 239

 Score =  318 bits (817), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 124/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  + +R +SL   V+++AEGSCL++ G T +L TA++E +VP ++R    GW+T
Sbjct: 1   MRPSGRAADALRSVSLQPGVARHAEGSCLIRMGVTEVLCTASVEGRVPPFLRGKGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVD  A+G   I++DCDVI 
Sbjct: 61  AEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVVDRKAMGEVSIVLDCDVIT 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR AAITGAWVALH  L+H    +     +  L+  VAAISCG+  G PI+DL+Y 
Sbjct: 121 ADGGTRCAAITGAWVALHQALEH--CVTKNLISANPLRDQVAAISCGLWEGEPILDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS    DANFV+T  G IVEVQG+AE   FS      ++ LA+   A+L   Q+  I 
Sbjct: 179 EDSAAQADANFVLTGKGGIVEVQGTAEGEPFSDAQLLGLMALARKGTAELFAAQRRAIG 237


>gi|323489951|ref|ZP_08095172.1| ribonuclease PH [Planococcus donghaensis MPA1U2]
 gi|323396247|gb|EGA89072.1| ribonuclease PH [Planococcus donghaensis MPA1U2]
          Length = 249

 Score =  318 bits (816), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 111/240 (46%), Positives = 159/240 (66%), Gaps = 7/240 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+  RQ N++R +++      + EGS L+  G T ++ TAT+E+KVP ++R    GWITA
Sbjct: 3   RIDNRQTNELRPVTVDVEYLIHPEGSVLITVGQTKVICTATIEDKVPGFLRGQGKGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T +R +REA +G+ GGR+ EIQR+IGRALR+VVDL  LG R + IDCDVIQA
Sbjct: 63  EYSMLPRATNSRNRREASAGKIGGRTMEIQRLIGRALRAVVDLEKLGERTLWIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYG 180
           DGGTRTA+ITGA++A+   +  +E           +   +AA S G+     PI+DL+Y 
Sbjct: 123 DGGTRTASITGAFIAMTMAIGKLE------LPDFPVTDFLAATSVGVTAENGPILDLNYV 176

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS+ +VD N VMT +GH VE+QG+ E +TF++     +L+L +  I  LI +Q+D +  
Sbjct: 177 EDSSAEVDMNLVMTGAGHFVELQGTGEESTFTRAQLNELLDLGEAGIRQLIAMQQDALGE 236


>gi|262038518|ref|ZP_06011887.1| tRNA nucleotidyltransferase [Leptotrichia goodfellowii F0264]
 gi|261747387|gb|EEY34857.1| tRNA nucleotidyltransferase [Leptotrichia goodfellowii F0264]
          Length = 230

 Score =  318 bits (816), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 110/233 (47%), Positives = 157/233 (67%), Gaps = 3/233 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR++ R+ ++MRE+ +T+    + EGS L++FG+T ++  AT+EEKVP ++R T  GWIT
Sbjct: 1   MRVN-RKNDEMREVKVTKNYIMHPEGSVLIEFGNTKVICNATVEEKVPPFLRGTNSGWIT 59

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T NRV+REA  GR  GR+ EIQR+IGRALR+ V+L  LG R +IIDCDVIQ
Sbjct: 60  AEYSMLPRATNNRVQREANKGRLSGRTMEIQRLIGRALRAAVNLEKLGERTVIIDCDVIQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG ++AL   ++ + D     ++   +   VAA+S G +    ++DL+Y 
Sbjct: 120 ADGGTRTASITGGYLALELAIEKLIDKGKLNEI--PINSRVAAVSVGKIKNEILLDLEYE 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           ED   DVD N +M D G  +E+QG+ E ATF+Q+     + ++K     L  L
Sbjct: 178 EDFRADVDMNIIMNDKGEFIELQGTGEEATFTQEELLKFIEISKKGFEKLFNL 230


>gi|224585533|ref|YP_002639332.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224470061|gb|ACN47891.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 228

 Score =  318 bits (816), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 120/230 (52%), Positives = 157/230 (68%), Gaps = 2/230 (0%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           MR ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWITAEYGMLPR+T
Sbjct: 1   MRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRAT 60

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
             R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDV+QADGGTRTA+I
Sbjct: 61  HTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVVQADGGTRTASI 120

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
           TGA VAL D L  +   +N    +  +KG VAA+S G++ G  I DL+Y EDS  + D N
Sbjct: 121 TGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDSAAETDMN 178

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            VMT+ G I+EVQG+AE   FS +    +L LA+  I  ++  QK  + N
Sbjct: 179 VVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 228


>gi|294056535|ref|YP_003550193.1| ribonuclease PH [Coraliomargarita akajimensis DSM 45221]
 gi|293615868|gb|ADE56023.1| ribonuclease PH [Coraliomargarita akajimensis DSM 45221]
          Length = 252

 Score =  318 bits (815), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 106/240 (44%), Positives = 143/240 (59%), Gaps = 4/240 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGWI 59
           R   R  +Q+R I     ++ +A GS LV FG T ++  A++++KVP W+R    + GW+
Sbjct: 11  RPDQRAVDQLRPIHFETGIAPHALGSVLVSFGQTRVICAASIDKKVPGWMRAQGVEGGWM 70

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           TAEY MLP ST +R  R+   G+  GR+ EIQR+IGR+LR+V DL  L  R I IDCDV+
Sbjct: 71  TAEYSMLPYSTLDRKPRDISRGKADGRTIEIQRLIGRSLRAVFDLKKLPGRTIWIDCDVL 130

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTRTA+I+GA+VA    +Q +         +      VAAIS G+    P++DL+Y
Sbjct: 131 QADGGTRTASISGAYVAAQIAVQKLIAAGEL--EANPFTDSVAAISVGVFQDTPVLDLNY 188

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED    VDAN VMT +G  VEVQ S E ATF +     +L L    I +L  LQ+  I 
Sbjct: 189 PEDKDASVDANIVMTGTGKYVEVQSSGEEATFDRAELDTLLELGAKGIQELSALQQQAIE 248


>gi|237654670|ref|YP_002890984.1| ribonuclease PH [Thauera sp. MZ1T]
 gi|237625917|gb|ACR02607.1| ribonuclease PH [Thauera sp. MZ1T]
          Length = 243

 Score =  318 bits (815), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 126/242 (52%), Positives = 168/242 (69%), Gaps = 2/242 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S RQ +Q+R + LTR  + +AEGS LV+FG T +L TA++EE VP ++R    GW+T
Sbjct: 1   MRPSLRQPDQLRAVRLTRGFTCHAEGSVLVEFGATRVLCTASVEETVPGFLRGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI++DCDV+Q
Sbjct: 61  AEYGMLPRATHTRSAREAAKGKQSGRTQEIQRLIGRSLRAVVDLGALGERQIVVDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VA+HD L  +            ++  VAA+S G+  G P++DLDY 
Sbjct: 121 ADGGTRTAAITGACVAVHDALVGLVAAGKL--AHNPMREFVAAVSVGIHQGVPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D D N VMT+ G ++EVQG+AE   FS+    A+L+LA+     L +LQ+  + +
Sbjct: 179 EDSDCDTDMNVVMTEGGGLIEVQGTAEGTPFSRAELDALLDLAELGGRQLFELQRGAVRS 238

Query: 241 EV 242
            +
Sbjct: 239 AI 240


>gi|313668116|ref|YP_004048400.1| ribonuclease PH [Neisseria lactamica ST-640]
 gi|313005578|emb|CBN87014.1| ribonuclease PH [Neisseria lactamica 020-06]
          Length = 242

 Score =  318 bits (815), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 115/234 (49%), Positives = 167/234 (71%), Gaps = 2/234 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  + +R+I +T R   + +GSCL++ G+T ++ TA+++E VP ++R    GW+TAEYGM
Sbjct: 9   RAADSLRDIKITPRFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVTAEYGM 68

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST +R++REA  G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADGGT
Sbjct: 69  LPASTASRMRREASEGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGGT 128

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTA+ITGA+VAL   +  +   S+       ++  VAA+S G++ G P++DLDY EDS  
Sbjct: 129 RTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSAGVVNGVPLLDLDYPEDSGC 186

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D D N VMT SG I+E+QG+AE A FS +    ++ LA+  I +L++ Q++ +S
Sbjct: 187 DSDVNIVMTASGKIIEIQGTAEGAPFSLEELGKLIGLAEKGIGELLRYQQNALS 240


>gi|297583709|ref|YP_003699489.1| ribonuclease PH [Bacillus selenitireducens MLS10]
 gi|297142166|gb|ADH98923.1| ribonuclease PH [Bacillus selenitireducens MLS10]
          Length = 261

 Score =  318 bits (815), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 115/239 (48%), Positives = 159/239 (66%), Gaps = 3/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R  +Q+R+I +     K+ EGS L+ FGDT ++ +A++E++VP ++R    GW+TA
Sbjct: 3   RAFERLNHQLRDIDMIPGYIKHPEGSVLISFGDTKVICSASIEDRVPPFLRGQGKGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T +R  RE+  G+  GR+ EIQR+IGRALRSVV+L  LG R + +DCDVIQA
Sbjct: 63  EYAMLPRATESRNIRESSKGKVTGRTMEIQRLIGRALRSVVNLDLLGERTVWVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYG 180
           DGGTRTA+ITGA+ A+    +++ +          L   +AAIS G+   G  ++DLDY 
Sbjct: 123 DGGTRTASITGAFTAVALAFENLMEEGKL--EENPLTDFLAAISVGVASDGDILLDLDYS 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST DVD N VMT +G +VEVQG+ E ATFS+     ML++A++ I  LI  QK VI 
Sbjct: 181 EDSTADVDMNIVMTGTGQLVEVQGTGEEATFSRAEMNKMLDVAEEGIGKLIDKQKAVIG 239


>gi|282858123|ref|ZP_06267318.1| tRNA nucleotidyltransferase [Pyramidobacter piscolens W5455]
 gi|282584045|gb|EFB89418.1| tRNA nucleotidyltransferase [Pyramidobacter piscolens W5455]
          Length = 251

 Score =  318 bits (815), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 116/233 (49%), Positives = 158/233 (67%), Gaps = 2/233 (0%)

Query: 7   QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
           + + +R +++ R  + YAEGSC++  G T +L TAT+E+KVP ++R    GW+TAEY +L
Sbjct: 13  RADALRPVTMERNWNVYAEGSCVISCGRTRVLCTATVEDKVPPFLRGQGKGWVTAEYSLL 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           PRST  RV R++  GR  GRSQEIQR+IGR+LR+ VDL ALG R + +DCDVIQADGGTR
Sbjct: 73  PRSTMTRVPRDSTKGRINGRSQEIQRLIGRSLRAAVDLDALGERCVTLDCDVIQADGGTR 132

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
           TA+ITGA+VAL D L+ +       +L   LK  VAA+S G + G  ++DL Y EDST +
Sbjct: 133 TASITGAYVALVDALRWLRGQGAFEKL--PLKSPVAAVSVGKVRGQLLLDLCYEEDSTAE 190

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           VD N VM   G  +EVQG+ E   FS++    ML+LA   I +L+ LQ+ V+ 
Sbjct: 191 VDFNVVMNGQGDFIEVQGTGEGGVFSREEMAGMLDLASAGIHELMALQRHVLR 243


>gi|299822585|ref|ZP_07054471.1| tRNA nucleotidyltransferase [Listeria grayi DSM 20601]
 gi|299816114|gb|EFI83352.1| tRNA nucleotidyltransferase [Listeria grayi DSM 20601]
          Length = 248

 Score =  317 bits (814), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 113/243 (46%), Positives = 159/243 (65%), Gaps = 3/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR + ++R+I L +    + EGS L+  GDT ++ +A++EEKVP ++R    GWI+
Sbjct: 1   MRHDGRNKGELRKIELIKDYLIHPEGSVLISTGDTKVICSASIEEKVPPFMRGEGKGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+ GGR+ EIQR+IGRALR+VVDL ALG R I IDCDVIQ
Sbjct: 61  AEYAMLPRATTTRNIRESSKGKVGGRTMEIQRLIGRALRAVVDLDALGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDY 179
           ADGGTRTA+ITGA+VAL   ++ +       +    +K  +AA S G+L     ++DL+Y
Sbjct: 121 ADGGTRTASITGAFVALALAIEKLYQTVPLAKF--PIKDFLAATSVGILENEGAVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  +VD N VMT +G  VE+QG+ E ATFS+     ++ L K  I  L  +Q++++ 
Sbjct: 179 IEDSAAEVDMNIVMTGAGQFVELQGTGEEATFSETDLQELITLGKKGIQALNIMQQEILG 238

Query: 240 NEV 242
             +
Sbjct: 239 AAL 241


>gi|205374390|ref|ZP_03227188.1| ribonuclease PH [Bacillus coahuilensis m4-4]
          Length = 247

 Score =  317 bits (814), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 106/241 (43%), Positives = 153/241 (63%), Gaps = 3/241 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +++R +++      + EGS L+  G T ++ TA++EE+VP ++R    GW+ 
Sbjct: 1   MRRNERKVDELRPVTIETDYLIHPEGSVLISIGQTKVICTASVEERVPPFMRGEGKGWVN 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+I R+LR+VVDL+ALG R I IDCDVIQ
Sbjct: 61  AEYSMLPRATEKRTIRESSKGKVTGRTMEIQRLISRSLRAVVDLTALGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDY 179
           ADGGTRTA+ITGA++A+   +  +     K      +   ++AIS G+      I+DL Y
Sbjct: 121 ADGGTRTASITGAFIAMTIAIDKI--SKEKKLPRFPVNDFLSAISVGIDREKTVILDLSY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDST  VD N VMT SG  VEVQG+ E ATF+      +L++A+    +L+K QK+ + 
Sbjct: 179 DEDSTARVDMNVVMTGSGEFVEVQGTGEEATFTMSELQQLLSVAEKGNRELMKFQKEALG 238

Query: 240 N 240
            
Sbjct: 239 E 239


>gi|254439955|ref|ZP_05053449.1| ribonuclease PH [Octadecabacter antarcticus 307]
 gi|198255401|gb|EDY79715.1| ribonuclease PH [Octadecabacter antarcticus 307]
          Length = 235

 Score =  317 bits (814), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 125/234 (53%), Positives = 170/234 (72%), Gaps = 4/234 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  + MR IS+   V+++AEGSCL+K GDT +L TA+++E+VP +++N+  GW+T
Sbjct: 1   MRPSGRTIDGMRPISIEIDVTRHAEGSCLIKCGDTQVLCTASIDERVPSFLKNSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA +G Q GR+QEIQR+IGR+LR+ +D  ALG RQI+IDCDVIQ
Sbjct: 61  AEYGMLPRATNTRMRREAKNG-QSGRTQEIQRLIGRSLRAGIDRVALGERQIVIDCDVIQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +Q + +  +    S  L   VAA+SCG+  G  ++DLDY 
Sbjct: 120 ADGGTRCASITGGWVALKLAVQKLMNAGDVI--SDPLLIPVAAVSCGIYAGQSVLDLDYP 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           EDS   VD NFVMT    ++E+Q SAE +TF++D   AM++LA   IA+L  +Q
Sbjct: 178 EDSEAGVDGNFVMTAD-KLIEIQMSAEGSTFTRDQMNAMMDLAHKGIAELTAVQ 230


>gi|38234421|ref|NP_940188.1| ribonuclease PH [Corynebacterium diphtheriae NCTC 13129]
 gi|61215954|sp|Q6NFN6|RNPH_CORDI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|38200684|emb|CAE50380.1| Putative ribonuclease PH [Corynebacterium diphtheriae]
          Length = 241

 Score =  317 bits (814), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 105/239 (43%), Positives = 147/239 (61%), Gaps = 3/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +QMR + +TR  +    GS LV+FG+T ++ TA++E  VP + R++  GW+TA
Sbjct: 6   RADGRAVDQMRTVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE++ G+  GR+ EI R+IGR+LR+ VDL  LG   I IDCDV+QA
Sbjct: 66  EYAMLPAATAERNARESMRGKVKGRTHEISRLIGRSLRAAVDLDELGENTINIDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VAL D +  +++          LK  VAA+S G++ G   +DL Y E
Sbjct: 126 DGGTRTASITGAYVALADAIAVLKE--QGVVPGNPLKAAVAAVSVGVIDGQVCLDLPYEE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  DVD N +M      VE+QG+ E  TF +D    +L+ A+    +L   QK  +  
Sbjct: 184 DSRADVDMNVIMQGD-RFVEIQGTGEHNTFDRDELAVILDFAQKGCQELFAAQKAALEQ 241


>gi|33592677|ref|NP_880321.1| ribonuclease PH [Bordetella pertussis Tohama I]
 gi|33601937|ref|NP_889497.1| ribonuclease PH [Bordetella bronchiseptica RB50]
 gi|61216026|sp|Q7VXY3|RNPH_BORPE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61216032|sp|Q7WI90|RNPH_BORBR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|33572323|emb|CAE41877.1| ribonuclease PH [Bordetella pertussis Tohama I]
 gi|33576375|emb|CAE33453.1| ribonuclease PH [Bordetella bronchiseptica RB50]
 gi|332382092|gb|AEE66939.1| ribonuclease PH [Bordetella pertussis CS]
          Length = 246

 Score =  317 bits (814), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 118/237 (49%), Positives = 160/237 (67%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  + +R  SL R  ++YAEGS LV+ G+TH+L TA++ EKVP +++    GW+TA
Sbjct: 11  RPSGRAVDALRPFSLERGFTRYAEGSVLVRAGNTHVLCTASVLEKVPPFLKGRGEGWVTA 70

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V DL  LG R + +DCDV+QA
Sbjct: 71  EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDLRLLGERTLHLDCDVLQA 130

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+ITGAWVA  D +  +    +       ++  VAA+S G++ G  ++DLDY E
Sbjct: 131 DGGTRCASITGAWVAAADAVALLMQRGDL--AHNPIRDAVAAVSVGLVDGRAVLDLDYQE 188

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS    D N VMT SG  VEVQG+ E ATF++     ML LA+  IA L++ Q++ +
Sbjct: 189 DSACAADVNVVMTGSGAFVEVQGTGEGATFTRGELDTMLGLAEGGIAQLVRAQREAL 245


>gi|229918348|ref|YP_002886994.1| ribonuclease PH [Exiguobacterium sp. AT1b]
 gi|229469777|gb|ACQ71549.1| ribonuclease PH [Exiguobacterium sp. AT1b]
          Length = 249

 Score =  317 bits (814), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 117/239 (48%), Positives = 154/239 (64%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R+ +++R + +   V+K+AEGS L+  GDT ++ TAT+EE+VP ++R  K GWI 
Sbjct: 1   MR-DARRFDELRPVEIVPHVNKHAEGSVLISIGDTKVICTATVEERVPNFLRGKKQGWIN 59

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+TG+R  RE+V G+Q GR+ EIQR+IGR+LRSVVDL  LG R I +DCDVIQ
Sbjct: 60  AEYAMLPRATGDRTVRESVRGKQSGRTMEIQRLIGRSLRSVVDLERLGERTIWVDCDVIQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG + AL   +  +            +K  VAAIS G      ++DLDY 
Sbjct: 120 ADGGTRTASITGGFCALVLAVDRLIRQGKLEDT--PIKEGVAAISVGRTD-ELVLDLDYL 176

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  +VD N VMT SG  VEVQG+ E ATF+      ML LA+  I  L K  +  + 
Sbjct: 177 EDAAAEVDMNVVMTASGRFVEVQGTGEEATFTLQEMNEMLALAQHGIESLFKTAEAALG 235


>gi|296114411|ref|ZP_06833065.1| ribonuclease PH [Gluconacetobacter hansenii ATCC 23769]
 gi|295979172|gb|EFG85896.1| ribonuclease PH [Gluconacetobacter hansenii ATCC 23769]
          Length = 242

 Score =  317 bits (813), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 116/242 (47%), Positives = 164/242 (67%), Gaps = 2/242 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  + +R +S+    +++AEGS L++ G T +L  A++E +VP ++R    GW+T
Sbjct: 1   MRPSGRAIDALRPVSIQTGFARHAEGSALIRMGGTEVLCAASIESRVPPFLRGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  G+QGGR+ EIQR+I RALR+ +DL ALG   I +DCDV+ 
Sbjct: 61  AEYGMLPRATHSRGPREAAKGKQGGRTHEIQRLIARALRAGIDLRALGEISITVDCDVLN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR AAITGAWVAL   L  +   +     +  +   VAA+SCG+     ++DLDY 
Sbjct: 121 ADGGTRCAAITGAWVALRLALDGLVRAN--VIPALPITAQVAAVSCGLTGAGAVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS    DANFV+T++G IVE+QG+AE+A FSQ+ F  ++ LA+   A L ++Q+D ++ 
Sbjct: 179 EDSNAVADANFVLTETGGIVEIQGTAEQAPFSQEQFNELMRLAQVGTAQLFEIQRDAVAQ 238

Query: 241 EV 242
            V
Sbjct: 239 AV 240


>gi|84514911|ref|ZP_01002274.1| ribonuclease PH [Loktanella vestfoldensis SKA53]
 gi|84511070|gb|EAQ07524.1| ribonuclease PH [Loktanella vestfoldensis SKA53]
          Length = 235

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 129/239 (53%), Positives = 168/239 (70%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ N+MR +++   V+ +AEGSCL+K G+TH+L TAT++++VP +++N+  GW+T
Sbjct: 1   MRPSGRQINEMRNVTIETNVTMHAEGSCLIKCGNTHVLCTATIDDRVPPFLKNSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R++REA  G Q GR+QEIQR+IGR+LR+ VD  ALG RQII+DCDVIQ
Sbjct: 61  AEYGMLPRATNTRMRREAKEG-QSGRTQEIQRLIGRSLRAGVDRVALGERQIIVDCDVIQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG WVAL   +  +         S  L   VAAISCG+  G  ++DLDY 
Sbjct: 120 ADGGTRCASITGGWVALKLAVLKLMKTGQII--SDPLVDPVAAISCGIYAGQEVLDLDYP 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD NFVMT  G +VEVQ SAE ATFS+     +L LA+  +A+L  LQ   + 
Sbjct: 178 EDSEAGVDGNFVMTG-GRLVEVQMSAEGATFSRAQMDGLLGLAEKGVAELTALQLAAVR 235


>gi|15838106|ref|NP_298794.1| ribonuclease PH [Xylella fastidiosa 9a5c]
 gi|21759420|sp|Q9PD74|RNPH_XYLFA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|9106537|gb|AAF84314.1|AE003980_6 ribonuclease PH [Xylella fastidiosa 9a5c]
          Length = 241

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 120/238 (50%), Positives = 165/238 (69%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGRQ + +R + + R  + +AEGS LV FG+T ++ TA++E KVP+++RN   GW+TA
Sbjct: 5   RPSGRQADALRPVRIERAFTCHAEGSVLVSFGNTLVVCTASVEAKVPVFLRNKGEGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R +REA  G+Q GR+ EIQR+IGRALR+ VD +ALG R I +DCDV+QA
Sbjct: 65  EYGMLPRSTHTRSEREAARGKQAGRTLEIQRLIGRALRTCVDRTALGERTITLDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D ++ +E      +    L G VAA+S G+  G P++DLDY E
Sbjct: 125 DGGTRTAAITGAYVALVDAVRCLEQRGQLKK--SPLIGAVAAVSVGIYRGMPVLDLDYPE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  D D N VM D G ++E+QG+AE+  F +     +L LA+   A L  +Q++ ++
Sbjct: 183 DSDCDTDMNVVMNDEGGVIELQGTAEQQAFRRGELDMLLALAERGTAMLFDIQREALA 240


>gi|134097802|ref|YP_001103463.1| ribonuclease PH [Saccharopolyspora erythraea NRRL 2338]
 gi|166228314|sp|A4F913|RNPH_SACEN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|133910425|emb|CAM00538.1| ribonuclease PH [Saccharopolyspora erythraea NRRL 2338]
          Length = 251

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 108/238 (45%), Positives = 155/238 (65%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++ +RE+ +TR    +  GS LV+FG T +L  A+++E VP W   +  GW+TA
Sbjct: 3   RADGRSDDALREVRITRGYQDWPAGSVLVEFGRTRVLCAASVQEGVPRWRAGSGLGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R  RE+V GR GGR+ EI R++GR+LR+ +DL+ALG   I +DCDVIQA
Sbjct: 63  EYAMLPSSTNTRSARESVKGRIGGRTHEISRLVGRSLRACIDLAALGENTIALDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +   + +    + L   +AA+S G++ G   +DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAITWL-SAAGRLTDPKPLSCSIAAVSVGVVDGRVRLDLPYEE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD G +VEVQG+ E ATF++     M++ A    ++L ++Q + ++
Sbjct: 182 DSRAEVDMNVVATDHGTLVEVQGTGEGATFTRSTMDKMIDFALAGCSELSRIQSEALA 239


>gi|225874384|ref|YP_002755843.1| tRNA nucleotidyltransferase [Acidobacterium capsulatum ATCC 51196]
 gi|225793778|gb|ACO33868.1| tRNA nucleotidyltransferase [Acidobacterium capsulatum ATCC 51196]
          Length = 246

 Score =  317 bits (812), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 114/240 (47%), Positives = 158/240 (65%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R SGR+ ++MR + LT   +   EGS L++ G T +L  AT+E+ VP W+RN+  GW+T
Sbjct: 7   FRASGRRPDEMRPVKLTAGYTSMPEGSVLIEVGHTRVLCAATVEQGVPGWMRNSGRGWVT 66

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  RE+  G+ GGR+ EIQR+IGR+LR+VVD+ ALG R +I+DCDV+Q
Sbjct: 67  AEYGMLPRATLTRTARESERGKVGGRTHEIQRLIGRSLRAVVDMQALGERTVILDCDVLQ 126

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA  AL    Q +         +  L+  VAA S G++ G  ++DL Y 
Sbjct: 127 ADGGTRTAAITGACTALAIACQRLVKAGTL--KASPLRQLVAATSVGIVEGTTLLDLAYE 184

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  +VD N VMT+ G +VEVQ +AER  F +     M++ A+  I +L+ LQ+  + +
Sbjct: 185 EDSQAEVDMNLVMTEDGGLVEVQATAERQAFPRARMMEMMDYAEKGIRELLALQRAAMES 244


>gi|302529720|ref|ZP_07282062.1| ribonuclease PH [Streptomyces sp. AA4]
 gi|302438615|gb|EFL10431.1| ribonuclease PH [Streptomyces sp. AA4]
          Length = 258

 Score =  317 bits (812), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 117/238 (49%), Positives = 160/238 (67%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++Q+RE+ LTR   K+  GS LV+FG+T +L  A++ E VP W   +  GW+TA
Sbjct: 3   RKDGRNDDQLREVKLTRGFQKWPAGSVLVEFGNTRVLCAASVTEGVPRWRAGSGLGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  REAV GR GGR+ EI R+IGR+LR+ +DL+ALG   I+IDCDVIQA
Sbjct: 63  EYAMLPSATNTRSDREAVKGRIGGRTHEISRLIGRSLRACIDLAALGENTIVIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAA+TG +VAL D +  +   +N+    Q L   VAA+S G++ G   +DL Y E
Sbjct: 123 DGGTRTAAVTGGYVALADAITWL-GAANRLNDPQPLSSSVAAVSVGVVDGRVRLDLPYEE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G ++EVQG+ E ATF++     ML+LA     +L +LQK+ ++
Sbjct: 182 DSRAEVDMNVVATDAGTLIEVQGTGEGATFARSTLDTMLDLALAGCEELTRLQKEALA 239


>gi|255029953|ref|ZP_05301904.1| ribonuclease PH [Listeria monocytogenes LO28]
          Length = 244

 Score =  317 bits (812), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 110/239 (46%), Positives = 160/239 (66%), Gaps = 3/239 (1%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
           GR+ N +R I +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+AEY 
Sbjct: 1   GRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYS 60

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQADGG
Sbjct: 61  MLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGG 120

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYGEDS 183
           TRTA+ITGA++A+   +  +++     +    +K  +AA S G+L  G  ++DL+Y EDS
Sbjct: 121 TRTASITGAFIAMVMAIAKLDEAVPFAKF--PVKDFLAATSVGVLEEGGTVLDLNYVEDS 178

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
              VD N +MT SG  VE+QG+ E ATFS+     ++ L K  I++LI++QK+ + ++V
Sbjct: 179 AAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLGDKV 237


>gi|257056884|ref|YP_003134716.1| ribonuclease PH [Saccharomonospora viridis DSM 43017]
 gi|256586756|gb|ACU97889.1| RNAse PH [Saccharomonospora viridis DSM 43017]
          Length = 258

 Score =  317 bits (812), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 110/239 (46%), Positives = 161/239 (67%), Gaps = 1/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR ++Q+RE+ +TR   ++  GS L++ G+T +L  A++ E VP W   +  GW+T
Sbjct: 2   VRVDGRDDDQLREVRITRGFQQWPAGSVLIEVGNTRVLCAASVVEGVPRWRNGSGLGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP +T  R  RE+V GR GGR+ EI R+IGR+LRS +DL+ALG   I+IDCDVIQ
Sbjct: 62  AEYSMLPSATHTRGDRESVKGRIGGRTHEISRLIGRSLRSCIDLAALGENTIVIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG +VAL D +  +   + +    + L   V+A+S G++ G   +DL Y 
Sbjct: 122 ADGGTRTAAITGGYVALADAITWL-GAAGRLADPKPLSAAVSAVSVGVVDGRVRLDLPYE 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  +VD N V TD+G ++EVQG+ E ATF++     ML+LA+   A+L ++Q + ++
Sbjct: 181 EDSRAEVDMNVVATDAGTLIEVQGTGEGATFTRSTLDKMLDLAQAGCAELARIQAEALA 239


>gi|148272475|ref|YP_001222036.1| ribonuclease PH [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830405|emb|CAN01340.1| ribonuclease PH (tRNA nucleotidyltransferase) [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 245

 Score =  317 bits (812), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 120/238 (50%), Positives = 156/238 (65%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+REI++ R  S+ AEGS L+ FG T +L TA+   +VP W   +  GW+TA
Sbjct: 7   RHDGRTADQLREITIERNWSEQAEGSALISFGRTRVLCTASFTNRVPRWKAGSGQGWVTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R+ REAV G+ GGR+ EI R+IGR+LR+VVD+ ALG   I+IDCDV+QA
Sbjct: 67  EYAMLPRATNERMDREAVKGKVGGRTHEISRLIGRSLRAVVDMKALGENTIVIDCDVLQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D L+   +     Q +  LK  VAA+S G++ G P++DL Y E
Sbjct: 127 DGGTRTAAITGAYVALADALEWGREKKFIAQRATPLKDSVAAVSVGIVDGKPLLDLAYVE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   + D N VMT SG  VEVQG+AE A F +    A+L+LA      L  LQ   + 
Sbjct: 187 DVRAETDMNVVMTGSGSFVEVQGTAEGAPFDRAELDALLDLALGGGTTLTALQAQALG 244


>gi|59801347|ref|YP_208059.1| putative ribonuclease PH [Neisseria gonorrhoeae FA 1090]
 gi|194098405|ref|YP_002001463.1| ribonuclease PH [Neisseria gonorrhoeae NCCP11945]
 gi|239998810|ref|ZP_04718734.1| putative ribonuclease PH [Neisseria gonorrhoeae 35/02]
 gi|240014274|ref|ZP_04721187.1| putative ribonuclease PH [Neisseria gonorrhoeae DGI18]
 gi|240016710|ref|ZP_04723250.1| putative ribonuclease PH [Neisseria gonorrhoeae FA6140]
 gi|240080902|ref|ZP_04725445.1| putative ribonuclease PH [Neisseria gonorrhoeae FA19]
 gi|240112738|ref|ZP_04727228.1| putative ribonuclease PH [Neisseria gonorrhoeae MS11]
 gi|240115487|ref|ZP_04729549.1| putative ribonuclease PH [Neisseria gonorrhoeae PID18]
 gi|240117781|ref|ZP_04731843.1| putative ribonuclease PH [Neisseria gonorrhoeae PID1]
 gi|240121837|ref|ZP_04734799.1| putative ribonuclease PH [Neisseria gonorrhoeae PID24-1]
 gi|240123337|ref|ZP_04736293.1| putative ribonuclease PH [Neisseria gonorrhoeae PID332]
 gi|240125585|ref|ZP_04738471.1| putative ribonuclease PH [Neisseria gonorrhoeae SK-92-679]
 gi|240128040|ref|ZP_04740701.1| putative ribonuclease PH [Neisseria gonorrhoeae SK-93-1035]
 gi|254493595|ref|ZP_05106766.1| ribonuclease PH [Neisseria gonorrhoeae 1291]
 gi|260440703|ref|ZP_05794519.1| ribonuclease PH [Neisseria gonorrhoeae DGI2]
 gi|268594653|ref|ZP_06128820.1| ribonuclease PH [Neisseria gonorrhoeae 35/02]
 gi|268597020|ref|ZP_06131187.1| ribonuclease PH [Neisseria gonorrhoeae FA19]
 gi|268598803|ref|ZP_06132970.1| ribonuclease PH [Neisseria gonorrhoeae MS11]
 gi|268601161|ref|ZP_06135328.1| ribonuclease PH [Neisseria gonorrhoeae PID18]
 gi|268603481|ref|ZP_06137648.1| ribonuclease PH [Neisseria gonorrhoeae PID1]
 gi|268681961|ref|ZP_06148823.1| ribonuclease PH [Neisseria gonorrhoeae PID332]
 gi|268684174|ref|ZP_06151036.1| ribonuclease PH [Neisseria gonorrhoeae SK-92-679]
 gi|268686430|ref|ZP_06153292.1| ribonuclease PH [Neisseria gonorrhoeae SK-93-1035]
 gi|291044013|ref|ZP_06569729.1| ribonuclease PH [Neisseria gonorrhoeae DGI2]
 gi|293399206|ref|ZP_06643371.1| ribonuclease PH [Neisseria gonorrhoeae F62]
 gi|75432481|sp|Q5F840|RNPH_NEIG1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|226736920|sp|B4RL28|RNPH_NEIG2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|59718242|gb|AAW89647.1| putative ribonuclease PH [Neisseria gonorrhoeae FA 1090]
 gi|193933695|gb|ACF29519.1| putative ribonuclease PH [Neisseria gonorrhoeae NCCP11945]
 gi|226512635|gb|EEH61980.1| ribonuclease PH [Neisseria gonorrhoeae 1291]
 gi|268548042|gb|EEZ43460.1| ribonuclease PH [Neisseria gonorrhoeae 35/02]
 gi|268550808|gb|EEZ45827.1| ribonuclease PH [Neisseria gonorrhoeae FA19]
 gi|268582934|gb|EEZ47610.1| ribonuclease PH [Neisseria gonorrhoeae MS11]
 gi|268585292|gb|EEZ49968.1| ribonuclease PH [Neisseria gonorrhoeae PID18]
 gi|268587612|gb|EEZ52288.1| ribonuclease PH [Neisseria gonorrhoeae PID1]
 gi|268622245|gb|EEZ54645.1| ribonuclease PH [Neisseria gonorrhoeae PID332]
 gi|268624458|gb|EEZ56858.1| ribonuclease PH [Neisseria gonorrhoeae SK-92-679]
 gi|268626714|gb|EEZ59114.1| ribonuclease PH [Neisseria gonorrhoeae SK-93-1035]
 gi|291012476|gb|EFE04465.1| ribonuclease PH [Neisseria gonorrhoeae DGI2]
 gi|291610620|gb|EFF39730.1| ribonuclease PH [Neisseria gonorrhoeae F62]
 gi|317164098|gb|ADV07639.1| ribonuclease PH [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 242

 Score =  316 bits (811), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 113/234 (48%), Positives = 163/234 (69%), Gaps = 2/234 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  + +R+I +T     + +GSCL++ G+T ++ TA+++E  P ++     GW+TAEYGM
Sbjct: 9   RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASVDENAPPFLHGKNQGWVTAEYGM 68

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST  R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADGGT
Sbjct: 69  LPASTALRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGGT 128

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTA+ITGA+VAL   +  +   S+       +   VAA+S G++ G P++DLDY EDS  
Sbjct: 129 RTASITGAFVALQIAVGKL--VSDGILSENPILEAVAAVSAGVVNGVPLLDLDYPEDSGC 186

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D D N VMT SG I+E+QG+AE A FS D    ++ LA+  I +L++ Q++ +S
Sbjct: 187 DSDVNIVMTASGKIIEIQGTAEGAPFSLDELGKLVALAQKGIGELLRYQQNALS 240


>gi|332188380|ref|ZP_08390105.1| ribonuclease PH [Sphingomonas sp. S17]
 gi|332011609|gb|EGI53689.1| ribonuclease PH [Sphingomonas sp. S17]
          Length = 238

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 124/239 (51%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +QMR I++    +++AEGS L+ FGDT +L TA++EE+VP ++R    GW+T
Sbjct: 1   MRPSGRMPDQMRPITIEPNFTRHAEGSVLIGFGDTKVLVTASVEERVPPFLRGKGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V DL ALG RQI +DCDVIQ
Sbjct: 61  AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVCDLKALGERQITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+GAWVAL   +  +         S  ++  VAA+SCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAISGAWVALRMAVNKLMAEGKL--TSDPIRHKVAAVSCGIHQGTPVLDLDYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D DANFV+ ++GHI EVQ +AE AT+ ++    +L LA+    ++   Q+  I 
Sbjct: 179 EDSNADADANFVLIENGHIAEVQATAEHATYDEEALLRLLRLARMGCTEIFAAQERAIR 237


>gi|310817156|ref|YP_003965120.1| ribonuclease PH [Ketogulonicigenium vulgare Y25]
 gi|308755891|gb|ADO43820.1| ribonuclease PH [Ketogulonicigenium vulgare Y25]
          Length = 235

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 126/239 (52%), Positives = 167/239 (69%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ ++MR++++   VS++AEGSCL+K GDTH+L TA+L+ +VP +++N+  GW+T
Sbjct: 1   MRPSGRKPDEMRKVTIETGVSRHAEGSCLIKMGDTHVLCTASLDARVPPFLKNSGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R+KREA  G Q GR+QEIQR++GRALR+ VD  ALG RQI IDCDVIQ
Sbjct: 61  AEYGMLPRATHSRMKREAKDG-QSGRTQEIQRLVGRALRAGVDRVALGERQITIDCDVIQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR AAITG WVAL   +  +        +S  L   V+AISCG+  G  ++DLDY 
Sbjct: 120 ADGGTRCAAITGGWVALRLAVNKLLKAG--VIISDPLSAPVSAISCGIYAGQALLDLDYP 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD NF+MT    +VE+Q SAE ATFS+     +L+LA    A L   Q + + 
Sbjct: 178 EDSEAGVDGNFIMTAD-RLVEIQMSAEGATFSRAQMDTLLDLATQGNAWLAAAQLEAVK 235


>gi|257783975|ref|YP_003179192.1| ribonuclease PH [Atopobium parvulum DSM 20469]
 gi|257472482|gb|ACV50601.1| ribonuclease PH [Atopobium parvulum DSM 20469]
          Length = 253

 Score =  316 bits (810), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 121/237 (51%), Positives = 160/237 (67%), Gaps = 4/237 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R  +Q+R ++L R + K A+GSCLV FGDT +L  AT+EE VP W R ++ GW+T
Sbjct: 16  LRSYNRAWDQIRPVTLERNLMKNADGSCLVSFGDTRVLCAATIEEGVPAWRRASRAGWVT 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP ST  R KRE  + +  GRS EI+R+IGR+LRSVVDL+ LG   I +DCDV+Q
Sbjct: 76  AEYAMLPASTNQRTKRERANRK--GRSMEIERLIGRSLRSVVDLNRLGEYTITLDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVALHD L  + +          L G VAAIS G++ G  ++DLDY 
Sbjct: 134 ADGGTRTASITGAWVALHDALFSLVE--KDVLSRLPLTGQVAAISMGVVDGQVLLDLDYP 191

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS  D+D N V T+SG I+EVQG+ E   F ++    +L++ +  IA L++LQ  V
Sbjct: 192 EDSHADIDMNLVGTESGQIIEVQGTGEGGPFDREKLNQLLDVGQAGIAHLVELQNQV 248


>gi|307294011|ref|ZP_07573855.1| ribonuclease PH [Sphingobium chlorophenolicum L-1]
 gi|306880162|gb|EFN11379.1| ribonuclease PH [Sphingobium chlorophenolicum L-1]
          Length = 238

 Score =  316 bits (810), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 123/237 (51%), Positives = 163/237 (68%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +QMREI++    + +AEGSCL+ FGDT +L TA++EEKVP ++R    GW+T
Sbjct: 1   MRPSGRAPDQMREITMEPGFTIHAEGSCLISFGDTRVLCTASIEEKVPPFLRGKGSGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVDL  LG RQI++DCDVIQ
Sbjct: 61  AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDLEKLGERQIVVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+G+WVAL   +  +   ++       +   VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAISGSWVALRIAVDKL--LASGALKEDPIVQKVAAISCGIYKGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS  + DAN ++T  G   EVQ +AE AT+ ++    +L LA+   A +   Q  V
Sbjct: 179 EDSNAEADANLILTGDGKFAEVQATAEGATYDEEELLRLLRLARIGCAQIFAAQDKV 235


>gi|258541167|ref|YP_003186600.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-01]
 gi|256632245|dbj|BAH98220.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-01]
 gi|256635302|dbj|BAI01271.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-03]
 gi|256638357|dbj|BAI04319.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-07]
 gi|256641411|dbj|BAI07366.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-22]
 gi|256644466|dbj|BAI10414.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-26]
 gi|256647521|dbj|BAI13462.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-32]
 gi|256650574|dbj|BAI16508.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653565|dbj|BAI19492.1| ribonuclease PH [Acetobacter pasteurianus IFO 3283-12]
          Length = 244

 Score =  316 bits (810), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 116/239 (48%), Positives = 158/239 (66%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGRQ +QMR I++    + +AEGS L++ G T +L TA++E +VP ++R    GW+T
Sbjct: 1   MRPSGRQPDQMRPITIETGFAHHAEGSALIRVGGTEVLCTASIENRVPPFLRGKGTGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V DL ALG   I +DCDV+ 
Sbjct: 61  AEYGMLPRATHTRGNREAAKGKQSGRTQEIQRLIGRSLRAVTDLDALGEMSITLDCDVLN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITGAWVAL   L  +   +        L+G VAA+SCG+     ++DLDY 
Sbjct: 121 ADGGTRCASITGAWVALRLALGKL--VATNVLPRLPLRGQVAAVSCGLTTEGAVLDLDYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS+   D NFV+T    IVE+QG+AE A F++D F  +  LA+  + +L + Q   + 
Sbjct: 179 EDSSASADTNFVLTADRRIVEIQGTAESAPFTEDAFDNLFALARKGVTELFEAQMAAVE 237


>gi|227875768|ref|ZP_03993896.1| ribonuclease PH [Mobiluncus mulieris ATCC 35243]
 gi|269977414|ref|ZP_06184386.1| ribonuclease PH [Mobiluncus mulieris 28-1]
 gi|306819041|ref|ZP_07452758.1| tRNA nucleotidyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|307700330|ref|ZP_07637370.1| tRNA nucleotidyltransferase [Mobiluncus mulieris FB024-16]
 gi|227843710|gb|EEJ53891.1| ribonuclease PH [Mobiluncus mulieris ATCC 35243]
 gi|269934330|gb|EEZ90892.1| ribonuclease PH [Mobiluncus mulieris 28-1]
 gi|304648234|gb|EFM45542.1| tRNA nucleotidyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|307614541|gb|EFN93770.1| tRNA nucleotidyltransferase [Mobiluncus mulieris FB024-16]
          Length = 252

 Score =  316 bits (810), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 112/234 (47%), Positives = 155/234 (66%), Gaps = 2/234 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+ +Q+R ++         EG+ L++ G+T +L  A+L E VP W ++T  GW+T
Sbjct: 1   MRKDGRRIDQLRNMAFHLDWVSTPEGAVLIEAGNTRVLCCASLSEGVPRWRKDTGLGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+QEI R+IGR+LR+ VD +ALG   I IDCDV+Q
Sbjct: 61  AEYSMLPRATATRSTRESVKGKLGGRTQEISRLIGRSLRAGVDYTALGENTIEIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAW+ALH  ++  E  ++ F   + LK  V AIS G++ G   +DL Y 
Sbjct: 121 ADGGTRTAAITGAWIALHRAIE--EGKTSGFIPGEPLKDSVCAISVGIIDGEARLDLPYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           ED   + D N VMT +G ++EVQG+AE   FS++    +L+LA+   ADL + Q
Sbjct: 179 EDVRAETDMNVVMTGTGKLIEVQGTAEGEPFSREDLSKLLDLAQGGCADLTRAQ 232


>gi|317124457|ref|YP_004098569.1| RNAse PH [Intrasporangium calvum DSM 43043]
 gi|315588545|gb|ADU47842.1| RNAse PH [Intrasporangium calvum DSM 43043]
          Length = 256

 Score =  316 bits (810), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 115/239 (48%), Positives = 155/239 (64%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  ++ RE+ +TR    +AEGS LV+FG T +L  A+  E VP W++    GW+TA
Sbjct: 11  RHDGRAPDETREVRITRGWLDHAEGSVLVEFGRTRVLCAASFTEGVPRWLKGRGTGWVTA 70

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+V+D  ALG   I++DCDV+QA
Sbjct: 71  EYAMLPRATNTRSDRESVKGRIGGRTHEISRLIGRSLRAVIDTKALGENTIVLDCDVLQA 130

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D ++         + +Q L G VAA+S G++ G  ++DLDY E
Sbjct: 131 DGGTRTAAITGAYVALADAIEDARARGLIAKGAQPLTGSVAAVSVGIVGGRAVIDLDYPE 190

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DST + D N VMT  G  +EVQG+AE   F +     +L LA    ADL   Q+  +++
Sbjct: 191 DSTAETDMNVVMTGDGRYIEVQGTAEGEPFDRALLDDLLELAAKGCADLTAAQRAALAS 249


>gi|293605635|ref|ZP_06688015.1| tRNA nucleotidyltransferase [Achromobacter piechaudii ATCC 43553]
 gi|292816015|gb|EFF75116.1| tRNA nucleotidyltransferase [Achromobacter piechaudii ATCC 43553]
          Length = 244

 Score =  316 bits (810), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 120/237 (50%), Positives = 162/237 (68%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +++R  SL R  ++YAEGS LVK GDTH+L TA++ EKVP +++    GW+TA
Sbjct: 9   RPSGRAVDELRPFSLERGFTRYAEGSVLVKAGDTHVLCTASVLEKVPPFLKGKGEGWVTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V D+ ALG R + +DCDV+QA
Sbjct: 69  EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDMRALGERTLHLDCDVLQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+ITGAWVA  D +  +    +       ++  VAA+S G++ G  ++DLDY E
Sbjct: 129 DGGTRCASITGAWVAAADAVALLMKRGDLAV--NPIRDAVAAVSVGLVQGRSVLDLDYQE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  D D N +MT SG  VEVQG+ E ATF++     ML LA+  IA L++ Q+  +
Sbjct: 187 DSACDADVNVIMTGSGAFVEVQGTGEGATFTRAELDTMLVLAEGGIASLVRAQRAAL 243


>gi|195953232|ref|YP_002121522.1| ribonuclease PH [Hydrogenobaculum sp. Y04AAS1]
 gi|226736913|sp|B4U8T3|RNPH_HYDS0 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|195932844|gb|ACG57544.1| ribonuclease PH [Hydrogenobaculum sp. Y04AAS1]
          Length = 255

 Score =  316 bits (810), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 106/234 (45%), Positives = 159/234 (67%), Gaps = 2/234 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ +++R I + R  + +AEGSCLV+FG+T ++ TA++ E VP +++    GWIT
Sbjct: 1   MRKNNRKLDELRPIRIQRDFNIHAEGSCLVEFGNTRVICTASIAESVPPFLKGKNQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V+G+ GGR+ EIQRMIGRA+R+V+DL+ +G R I IDCDVIQ
Sbjct: 61  AEYSMLPRATATRNMRESVTGKIGGRTHEIQRMIGRAMRAVIDLTKIGERTIWIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I GA++A+ D +  + +   K   S  ++  V A+S G++    ++DLD+ 
Sbjct: 121 ADGGTRTASIVGAFIAMTDAIIKLNE--QKLINSVPIRDTVGAVSVGIVNDRLMLDLDFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           EDS   VD   V T +G +VE+    E AT+++  F AML+L  + +  + +LQ
Sbjct: 179 EDSNAAVDMTIVATGNGEMVEIHSLGEEATYTRKEFEAMLDLGLESLKQIAELQ 232


>gi|254445470|ref|ZP_05058946.1| ribonuclease PH [Verrucomicrobiae bacterium DG1235]
 gi|198259778|gb|EDY84086.1| ribonuclease PH [Verrucomicrobiae bacterium DG1235]
          Length = 252

 Score =  315 bits (809), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 108/243 (44%), Positives = 150/243 (61%), Gaps = 4/243 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GWI 59
           R  GR+ + +REIS     +  A GS LV FGDT ++  A LE++VP W+R      GW+
Sbjct: 6   RPDGRKCDALREISFQADFAANATGSVLVSFGDTKVICGAMLEKRVPGWMRAQNVSGGWL 65

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           TAEY MLP ST +R +R+A  G+Q GR  EIQR+IGR+LR+V+DL  L    + +DCDV+
Sbjct: 66  TAEYSMLPYSTLDRKQRDASRGKQDGRGVEIQRLIGRSLRAVIDLQKLPGHTLWVDCDVL 125

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTRTA+ITGA++A    +Q + D           +  +AA+S G+  G P++DL Y
Sbjct: 126 QADGGTRTASITGAYLAARLAVQKLIDAGTL--KENPFRDSIAAVSVGIYEGEPVLDLPY 183

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED    VD N VMT  G  VE+QG+ E ATFS+D    ++ LAK  I +L  +Q   ++
Sbjct: 184 IEDRDASVDFNVVMTGKGEFVELQGTGEEATFSEDELAKLIGLAKKGIKELSSMQAAFLT 243

Query: 240 NEV 242
             +
Sbjct: 244 QRL 246


>gi|238022211|ref|ZP_04602637.1| hypothetical protein GCWU000324_02118 [Kingella oralis ATCC 51147]
 gi|237866825|gb|EEP67867.1| hypothetical protein GCWU000324_02118 [Kingella oralis ATCC 51147]
          Length = 243

 Score =  315 bits (809), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 117/225 (52%), Positives = 162/225 (72%), Gaps = 2/225 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  +Q+R +++T     +A+GS L+  G+T ++ TAT+++ VP ++R    GW+TAEYGM
Sbjct: 8   RAAHQLRPVAITPNFLPHADGSVLMVCGNTKVICTATVDDNVPPFLRGKNQGWVTAEYGM 67

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST +R+KREA +G+Q GR+QEIQR+IGR+LR+ VDL+ LG RQI+IDCDVIQADGGT
Sbjct: 68  LPASTQSRMKREAAAGKQSGRTQEIQRLIGRSLRACVDLTLLGERQILIDCDVIQADGGT 127

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTA+ITGA+VAL   +Q + D  N    +  L G VAA+S GM+ G P++DLDY EDS  
Sbjct: 128 RTASITGAFVALQIAIQKLLD--NGTLPANPLIGSVAAVSAGMVNGVPLLDLDYPEDSGC 185

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           D D N VM ++ +I+E+QG+AE A FS     A++ LA+  IA L
Sbjct: 186 DSDVNIVMLNAENIIEIQGTAEGAAFSVAELNALIALAQQGIAQL 230


>gi|298345213|ref|YP_003717900.1| ribonuclease PH [Mobiluncus curtisii ATCC 43063]
 gi|304390773|ref|ZP_07372725.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|298235274|gb|ADI66406.1| ribonuclease PH [Mobiluncus curtisii ATCC 43063]
 gi|304325656|gb|EFL92902.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 257

 Score =  315 bits (809), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 113/237 (47%), Positives = 151/237 (63%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ +Q+RE++L        EG  LV  G+T +L +A+L E VP W +++  GW+TA
Sbjct: 7   RADGRRMDQLREVTLHMDWVSAPEGCVLVSCGNTRVLCSASLTEGVPRWRKDSGFGWVTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+  GR+ EI R+IGRALR+ VD +ALG   I IDCDV+QA
Sbjct: 67  EYAMLPRATDTRNTRESVKGKISGRTSEISRLIGRALRAAVDYAALGENTIAIDCDVLQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGAW+AL   +    D    F      +  V AIS G++   P +DL Y E
Sbjct: 127 DGGTRTASITGAWIALQRAIAVGRDSG--FIPGNPTRDSVCAISVGIIDSIPRLDLPYEE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  + D N VMT SG +VEVQG+AE A FS+    A+L+LA+    DL +LQ+  +
Sbjct: 185 DSRAETDMNVVMTGSGSLVEVQGTAEGAPFSRAELDALLDLAQAGCRDLTRLQRAAV 241


>gi|238927868|ref|ZP_04659628.1| ribonuclease PH [Selenomonas flueggei ATCC 43531]
 gi|238884288|gb|EEQ47926.1| ribonuclease PH [Selenomonas flueggei ATCC 43531]
          Length = 248

 Score =  315 bits (809), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 111/242 (45%), Positives = 154/242 (63%), Gaps = 5/242 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R+ +Q+R + + R   +YA+GS L++ G T ++  AT+EE+VP +++ T  GW+TA
Sbjct: 3   RRDLRRADQLRPVRIERGYQRYADGSALIETGHTRVVCAATVEERVPFFLKGTGTGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +   R  REAV G Q GR+QEIQR+IGRALR+VVD  ALG R I IDCDV+QA
Sbjct: 63  EYSMLPGAGAERTAREAVRGHQSGRTQEIQRLIGRALRAVVDTKALGERTIHIDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYG 180
           DGGTRTA++TGA+VAL +           F     ++ +VAA+S G+     P++DL Y 
Sbjct: 123 DGGTRTASVTGAFVALVEACASFYAKRGIF----PVRDYVAAVSVGINAENEPLLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VMT +G  VEVQG+ E   F++    A+L+L +  I  LI  QK  + +
Sbjct: 179 EDSAAMVDMNIVMTGAGAFVEVQGTGEGRAFARKELNALLDLGEQGIRTLIDQQKVALGD 238

Query: 241 EV 242
            +
Sbjct: 239 VL 240


>gi|320106016|ref|YP_004181606.1| ribonuclease PH [Terriglobus saanensis SP1PR4]
 gi|319924537|gb|ADV81612.1| ribonuclease PH [Terriglobus saanensis SP1PR4]
          Length = 246

 Score =  315 bits (809), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 119/240 (49%), Positives = 155/240 (64%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R  GR   Q+R I LT      AEGS L++ G+T +L  AT+E  VP W+RN+  GW+T
Sbjct: 9   FRPGGRTAAQLRSIKLTPDYVATAEGSVLIEAGNTRVLCNATIEPSVPGWLRNSGKGWVT 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+ GGR+ EIQR+IGR+LRSVVDL ALG R II+DCDV+Q
Sbjct: 69  AEYSMLPRATLTRTPRESERGKIGGRTHEIQRLIGRSLRSVVDLKALGERMIILDCDVLQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL   L  +            LK  VAA S G++ G  ++DL Y 
Sbjct: 129 ADGGTRTAAITGACVALAMALDKLVAAGTL--PVSPLKQLVAATSVGIVDGNILLDLAYE 186

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  DVD N VMT+ G +VEVQ +AE  T+++    A+L++A   + +L+  Q+ V+  
Sbjct: 187 EDSRADVDMNVVMTEDGGLVEVQATAEHNTYTRPQLDALLDIAASGVKNLLVHQRSVLKK 246


>gi|254819170|ref|ZP_05224171.1| ribonuclease PH [Mycobacterium intracellulare ATCC 13950]
          Length = 259

 Score =  315 bits (808), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 106/240 (44%), Positives = 156/240 (65%), Gaps = 1/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  + +  GS L++FG T ++ TA++ E VP W + +  GW+TA
Sbjct: 4   REDGRLDDELRPVVITRGFTDHPAGSVLIEFGHTKVMCTASVTEGVPRWRKGSGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V GR  GR+QEI R+IGR+LR+ +DL+ALG   I +DCDV+QA
Sbjct: 64  EYAMLPSATHTRSDRESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAFVALADAVTYL-GAAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D+  +VD N V TD+G +VEVQG+ E ATF +     +L++A      L   Q++ ++  
Sbjct: 183 DARAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDVALAACDKLFAAQREALAQP 242


>gi|292669539|ref|ZP_06602965.1| tRNA nucleotidyltransferase [Selenomonas noxia ATCC 43541]
 gi|292648748|gb|EFF66720.1| tRNA nucleotidyltransferase [Selenomonas noxia ATCC 43541]
          Length = 248

 Score =  315 bits (808), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 111/242 (45%), Positives = 157/242 (64%), Gaps = 5/242 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R+ +Q+R + + R   +Y  GS LV+ G T ++  AT+EE+VP +++ +  GW+TA
Sbjct: 3   RRDLRRTDQLRPVHIERGYQRYPAGSALVETGHTRVVCAATVEERVPFFLKGSGTGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +   R  REAV GRQ GR+QEIQR+IGRALR+VVD+  LG R I IDCDV+QA
Sbjct: 63  EYAMLPGAGAERTAREAVRGRQSGRTQEIQRLIGRALRAVVDMKVLGERTIHIDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYG 180
           DGGTRTA++TGA+VAL +           F     ++ +VAA+S G+   G P++D+ Y 
Sbjct: 123 DGGTRTASVTGAFVALVEACATFYTKHGIF----PVRDYVAAVSVGIDTEGTPLLDICYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS+  VD N VMT +G  VEVQG+ E  +FS+    A+L+L +  I +LI+ QK  +  
Sbjct: 179 EDSSAMVDMNLVMTGAGEFVEVQGTGEGRSFSRAEMNALLDLGERGIRELIEHQKTALGE 238

Query: 241 EV 242
            +
Sbjct: 239 TL 240


>gi|119512637|ref|ZP_01631712.1| Ribonuclease PH [Nodularia spumigena CCY9414]
 gi|119462708|gb|EAW43670.1| Ribonuclease PH [Nodularia spumigena CCY9414]
          Length = 247

 Score =  315 bits (808), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 104/239 (43%), Positives = 147/239 (61%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ  ++R IS     +++A GS L KFGDT +L T ++ E VP ++  T  GW+T+
Sbjct: 5   RPDGRQPYELRPISFHAGFTRFAPGSVLTKFGDTQILCTVSVSEGVPKFLAGTGKGWLTS 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R  RE +  +  GR+QEIQR+IGR+LR+ +D  ALG R + +D DV+QA
Sbjct: 65  EYRMLPSSTQERQPRELL--KLSGRTQEIQRLIGRSLRAAIDFEALGERTLTVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTAAITG +VAL   +  +    +       L G VAAIS G+L G P +DL+Y E
Sbjct: 123 DAGTRTAAITGGFVALAHAVGQL--LHSGVLERSPLCGQVAAISVGLLQGEPYLDLNYIE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D    VD N VM  +  I+E+QG+AE  ++S+     +L+ A+  I  L+  Q++ I+ 
Sbjct: 181 DVGAAVDFNVVMNQNLGIIEIQGTAEEGSYSRTQLNQLLDFAEKGIQQLLIAQREAIAG 239


>gi|33597539|ref|NP_885182.1| ribonuclease PH [Bordetella parapertussis 12822]
 gi|61216028|sp|Q7W6C1|RNPH_BORPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|33573967|emb|CAE38285.1| ribonuclease PH [Bordetella parapertussis]
          Length = 250

 Score =  315 bits (808), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 117/238 (49%), Positives = 161/238 (67%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R +GR  + +R  SL R  ++YAEGS LV+ G+TH+L TA++ EKVP +++    GW+T
Sbjct: 14  VRPAGRAVDALRPFSLERGFTRYAEGSVLVRAGNTHVLCTASVLEKVPPFLKGRGEGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V DL  LG R + +DCDV+Q
Sbjct: 74  AEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDLRLLGERTLHLDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITGAWVA  D +  +    +       ++  VAA+S G++ G  ++DLDY 
Sbjct: 134 ADGGTRCASITGAWVAAADAVALLMQRGDL--AHNPIRDAVAAVSVGLVDGRAVLDLDYQ 191

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS    D N VMT SG  VEVQG+ E ATF++     ML LA+  IA L++ Q++ +
Sbjct: 192 EDSACAADVNVVMTGSGAFVEVQGTGEGATFTRGELDTMLGLAEGGIAQLVRAQREAL 249


>gi|304438692|ref|ZP_07398630.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304368341|gb|EFM22028.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 248

 Score =  315 bits (808), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 111/242 (45%), Positives = 154/242 (63%), Gaps = 5/242 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R+ +Q+R + + R   +YA+GS L++ G T ++  AT+EE+VP +++ T  GW+TA
Sbjct: 3   RRDLRRADQLRPVRIERGYQRYADGSALIETGHTRVVCAATVEERVPFFLKGTGTGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +   R  REAV G Q GR+QEIQR+IGRALR+VVD  ALG R I IDCDV+QA
Sbjct: 63  EYSMLPGAGAERTAREAVRGHQSGRTQEIQRLIGRALRAVVDTKALGERTIHIDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYG 180
           DGGTRTA++TGA+VAL +           F     ++ +VAA+S G+     P++DL Y 
Sbjct: 123 DGGTRTASVTGAFVALVEACASFYAKRGIF----PVRDYVAAVSVGINAENEPLLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N VMT +G  VEVQG+ E   F++    A+L+L +  I  LI  QK  + +
Sbjct: 179 EDSAAMVDMNIVMTGAGVFVEVQGTGEGRAFARKELNALLDLGEQGIRTLIDQQKVALGD 238

Query: 241 EV 242
            +
Sbjct: 239 VL 240


>gi|254465231|ref|ZP_05078642.1| ribonuclease PH [Rhodobacterales bacterium Y4I]
 gi|206686139|gb|EDZ46621.1| ribonuclease PH [Rhodobacterales bacterium Y4I]
          Length = 224

 Score =  315 bits (808), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 118/224 (52%), Positives = 159/224 (70%), Gaps = 2/224 (0%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
           +S+    +K+AEGSCL+K GDTH+L TAT+E++VP +I+ T  GW+TAEYGMLPR+T  R
Sbjct: 1   MSIETGFTKHAEGSCLIKVGDTHVLCTATIEDRVPPFIKGTGLGWVTAEYGMLPRATNTR 60

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
           ++REA SG+QGGR+ EIQR+IGRALR+ VD  ALG RQI +DCDV+QADGGTR A+ITG 
Sbjct: 61  MRREASSGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVLQADGGTRCASITGG 120

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
           WVAL   +  +    +       L   V+A+SCG+  G P++DLDY EDS   VD NF+M
Sbjct: 121 WVALRLAVNKLMKAGDVHI--DPLLDPVSAVSCGIYAGQPVLDLDYPEDSEAGVDGNFIM 178

Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           T SG ++EVQ SAE + FS+D    +++LA     +L ++QK  
Sbjct: 179 TGSGKLIEVQMSAEGSVFSRDQMNELMDLAAKGTVELAEMQKAA 222


>gi|300867701|ref|ZP_07112346.1| ribonuclease PH [Oscillatoria sp. PCC 6506]
 gi|300334284|emb|CBN57518.1| ribonuclease PH [Oscillatoria sp. PCC 6506]
          Length = 243

 Score =  315 bits (807), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 105/239 (43%), Positives = 154/239 (64%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ NQ+R IS  R  +K+A GS L + GDT +L T +++  VP +++ T  GW+TA
Sbjct: 5   RPDGRQPNQLRPISFQREFTKFATGSVLARSGDTQVLCTVSIQPGVPKFLQFTGQGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE +  +  GR+QEIQR+IGR+LRS +D++ LG R II+D DV+QA
Sbjct: 65  EYRMLPGATPQRQERELM--KLSGRTQEIQRLIGRSLRSCLDMNLLGERTIIVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRT +ITG +VAL D L  +       Q    +   VAA+S G+L G P +DL+Y E
Sbjct: 123 DAGTRTTSITGGFVALADALDKLVKNGELEQ--SPIVSQVAAVSVGLLEGEPFLDLNYPE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   +VD N VM ++  I+E+QG+AE  +FS+     +L++A+  I +L++ Q+  +  
Sbjct: 181 DVAAEVDFNVVMKENLSIIEMQGTAEEGSFSRTQLNQILDVAEKGIKELLEFQRQALRT 239


>gi|296284093|ref|ZP_06862091.1| ribonuclease PH [Citromicrobium bathyomarinum JL354]
          Length = 237

 Score =  315 bits (807), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 162/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +QMR IS+    +K+AEGSCL+ FGDT +L TA++E  VP W+R    GW+T
Sbjct: 1   MRPSGRAPDQMRAISIETGFTKHAEGSCLISFGDTRVLCTASVENSVPPWMRGKGAGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            EY MLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI +DCDVIQ
Sbjct: 61  GEYSMLPRATHTRGSREAARGKQSGRTQEIQRLIGRSLRAVVDMKKLGERQITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+GAWVAL   +  ++      +    + G +AAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAISGAWVALRLAIDGLKKSGAILE--DPITGKIAAISCGVYKGTPVLDLDYD 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS+ D DANFV+ + G I EVQ +AE A + ++    +L LA+    ++ K Q   + 
Sbjct: 179 EDSSADADANFVLIEGGKIAEVQATAEGAAYDEEALLRLLRLAQMGCGEIFKAQDAAVK 237


>gi|163840218|ref|YP_001624623.1| ribonuclease PH [Renibacterium salmoninarum ATCC 33209]
 gi|162953694|gb|ABY23209.1| ribonuclease PH [Renibacterium salmoninarum ATCC 33209]
          Length = 250

 Score =  315 bits (807), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 115/239 (48%), Positives = 162/239 (67%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q+R+IS+TR  S  AEGS L++FG+T +L T++L E VP W+R    GW+T
Sbjct: 10  LRADGRTADQLRDISITRGWSSQAEGSALIEFGNTRVLCTSSLTEGVPRWLRGEGRGWVT 69

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V G+ GGR+ EI R+IGR+LRS++D  ALG   I++DCDV+Q
Sbjct: 70  AEYAMLPRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGENTIVLDCDVLQ 129

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL + ++   +       +Q L   VAA+S G++   P++DL Y 
Sbjct: 130 ADGGTRTAAITGAYVALAESIRFARENKLISATAQPLTDTVAAVSAGIIDTVPMLDLAYV 189

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED   + D N V+T SG  VEVQG+AE A F ++   A+L+LA    A L ++Q++ + 
Sbjct: 190 EDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRNQLDALLDLALLGTAQLAQIQRETLG 248


>gi|167720743|ref|ZP_02403979.1| ribonuclease PH [Burkholderia pseudomallei DM98]
          Length = 219

 Score =  315 bits (807), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 118/221 (53%), Positives = 158/221 (71%), Gaps = 2/221 (0%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           MR++ +TR  +K+AEG+ LV+FGDT ++ TA++ E+VP ++R    GW+TAEYGMLPR+T
Sbjct: 1   MRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERGQGWLTAEYGMLPRAT 60

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
             R  REA  G+Q GR+QEIQR+IGRALR+V DL+ALG R + +DCDVIQADGGTRTA+I
Sbjct: 61  HTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLDCDVIQADGGTRTASI 120

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
           TGA+VA HD +  +            +  +VAAIS G+  G P++DLDY EDS  D D N
Sbjct: 121 TGAFVAAHDAVTKLVAAGRI--ARSPITDYVAAISVGVFGGTPVLDLDYDEDSACDTDMN 178

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
            VMT +G  VEVQG+AE A FS+    A+L+LA+  I +L+
Sbjct: 179 VVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELV 219


>gi|322436088|ref|YP_004218300.1| ribonuclease PH [Acidobacterium sp. MP5ACTX9]
 gi|321163815|gb|ADW69520.1| ribonuclease PH [Acidobacterium sp. MP5ACTX9]
          Length = 245

 Score =  314 bits (806), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 115/238 (48%), Positives = 152/238 (63%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R   R  NQ+R   +T       EGS L++ G+T +L  AT+E  VP W+RN+  GW+T
Sbjct: 6   FRPDNRTANQLRPTRITPGYVSTPEGSVLIEVGNTRVLCNATIETGVPGWMRNSGKGWVT 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+ GGR+ EIQR+IGR+LR +VD+ ALG R II+DCDV+Q
Sbjct: 66  AEYGMLPRATLTRSPREAEKGKIGGRTHEIQRLIGRSLRGIVDMRALGERTIILDCDVLQ 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL   L  +         +  LK  +AA S G++ G  ++DL Y 
Sbjct: 126 ADGGTRTAAITGASVALAIALGKLVQAGTL--KASPLKQMIAATSVGIVDGNTLLDLAYE 183

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS   VD N VM  SG +VE Q +AE+ ++S+     ML+LA+  I DL+ LQ+  +
Sbjct: 184 EDSRATVDMNVVMLASGGLVETQATAEKDSYSRQQLTEMLDLAEAGIRDLLILQQTAL 241


>gi|315656450|ref|ZP_07909339.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315493009|gb|EFU82611.1| tRNA nucleotidyltransferase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 259

 Score =  314 bits (806), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 113/237 (47%), Positives = 151/237 (63%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ +Q+RE++L        EG  LV  G+T +L +A+L E VP W +++  GW+TA
Sbjct: 9   RADGRRMDQLREVTLHMDWVSAPEGCVLVSCGNTRVLCSASLTEGVPRWRKDSGLGWVTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+  GR+ EI R+IGRALR+ VD +ALG   I IDCDV+QA
Sbjct: 69  EYAMLPRATDTRNTRESVKGKISGRTSEISRLIGRALRAAVDYAALGENTIAIDCDVLQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGAW+AL   +    D    F      +  V AIS G++   P +DL Y E
Sbjct: 129 DGGTRTASITGAWIALQCAIAVGRDSG--FIPGNPTRDSVCAISVGIIDSIPRLDLPYEE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  + D N VMT SG +VEVQG+AE A FS+    A+L+LA+    DL +LQ+  +
Sbjct: 187 DSRAETDMNVVMTGSGSLVEVQGTAEGAPFSRAELDALLDLAQAGCRDLTRLQRAAV 243


>gi|172058161|ref|YP_001814621.1| ribonuclease PH [Exiguobacterium sibiricum 255-15]
 gi|226736909|sp|B1YJW6|RNPH_EXIS2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|171990682|gb|ACB61604.1| ribonuclease PH [Exiguobacterium sibiricum 255-15]
          Length = 250

 Score =  314 bits (806), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 118/239 (49%), Positives = 155/239 (64%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MRL  R ++ MR+I L   V+K+AEGS L+  GDT +L TAT+EEKVP ++R  +HGWI 
Sbjct: 1   MRLDQRAQSDMRKIQLETDVNKHAEGSVLISVGDTRVLCTATVEEKVPPFLRGKRHGWIN 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REAV G+Q GR+ EIQR+I RALRSVV+L  LG R + IDCDV+Q
Sbjct: 61  AEYAMLPRATAQRTGREAVRGKQTGRTMEIQRLISRALRSVVNLEKLGERTVWIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG ++AL   +  +            +K  +AA+S G +    ++DL Y 
Sbjct: 121 ADGGTRTAAITGGFLALVLAVDGLIQSGKLTDT--PIKEGIAAVSVGKVGTELLLDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  DVD N VMT SG IVE+Q + E ATFS+     ML L +  I +L+   +  + 
Sbjct: 179 EDAAADVDLNLVMTSSGKIVELQATGEEATFSRKEMLDMLELGEKGIEELLHAAEQSLG 237


>gi|158335996|ref|YP_001517170.1| ribonuclease PH [Acaryochloris marina MBIC11017]
 gi|189043752|sp|B0CAB9|RNPH_ACAM1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|158306237|gb|ABW27854.1| ribonuclease PH [Acaryochloris marina MBIC11017]
          Length = 239

 Score =  314 bits (806), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 103/239 (43%), Positives = 150/239 (62%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ +Q+R I   R  + +A GS L + G T +L T +++  VP ++ +T  GW+TA
Sbjct: 5   RPDGRQPDQLRPIRFHREYTHFAAGSVLAECGQTKVLCTVSVQPGVPRFLEDTGQGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R +RE +  +  GR+QEIQR+IGR+LR+ +DL ALG R +++D DV+QA
Sbjct: 65  EYRMLPGSTPERQRRELM--KLSGRTQEIQRLIGRSLRAALDLQALGERTLVVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRT +ITG +VAL D +  +       Q    ++ HVAA+S G+L G P +DL+Y E
Sbjct: 123 DAGTRTTSITGGFVALVDAVNQLVSKGEIPQ--SPIRHHVAAVSVGLLEGQPFLDLNYPE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D    VD N V T+   ++EVQG+AE  T  +     ML+LA+  I  LI+ Q+  +++
Sbjct: 181 DVGAAVDLNVVATEQLELLEVQGTAEEGTLPRPQLNQMLDLAEIGIQQLIEAQRQALAS 239


>gi|315655635|ref|ZP_07908533.1| tRNA nucleotidyltransferase [Mobiluncus curtisii ATCC 51333]
 gi|315489699|gb|EFU79326.1| tRNA nucleotidyltransferase [Mobiluncus curtisii ATCC 51333]
          Length = 257

 Score =  314 bits (806), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 113/237 (47%), Positives = 151/237 (63%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ +Q+RE++L        EG  LV  G+T +L +A+L E VP W +++  GW+TA
Sbjct: 7   RADGRRMDQLREVTLHMDWVSAPEGCVLVSCGNTRVLCSASLTEGVPRWRKDSGLGWVTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V G+  GR+ EI R+IGRALR+ VD +ALG   I IDCDV+QA
Sbjct: 67  EYAMLPRATDTRNTRESVKGKISGRTSEISRLIGRALRAAVDYAALGENTIAIDCDVLQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGAW+AL   +    D    F      +  V AIS G++   P +DL Y E
Sbjct: 127 DGGTRTASITGAWIALQRAIAVGRDSG--FIPGNPTRDSVCAISVGIIDSIPRLDLPYEE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  + D N VMT SG +VEVQG+AE A FS+    A+L+LA+    DL +LQ+  +
Sbjct: 185 DSRAETDMNVVMTGSGSLVEVQGTAEGAPFSRAELDALLDLAQAGCRDLTRLQRAAV 241


>gi|309378698|emb|CBX22648.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 242

 Score =  314 bits (806), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 116/234 (49%), Positives = 169/234 (72%), Gaps = 2/234 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  + +R+I +T R   + +GSCL++ G+T ++ TA+++E VP ++R    GW+TAEYGM
Sbjct: 9   RAADSLRDIKITPRFLPHTDGSCLIECGNTKVICTASVDENVPPFLRGKNQGWVTAEYGM 68

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADGGT
Sbjct: 69  LPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGGT 128

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTA+ITGA+VALH  +  +   S+       ++  VAA+S G++ G P++DLDY EDS  
Sbjct: 129 RTASITGAFVALHIAVGKL--VSDGILTENPIREAVAAVSAGVVGGVPLLDLDYPEDSGC 186

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D D N VMT SG I+E+QG+AE A FS +    ++ LA+  I +L++ Q++ +S
Sbjct: 187 DSDVNIVMTTSGKIIEIQGTAEGAPFSLEELGKLIGLAEKGIGELLRYQQNALS 240


>gi|300789523|ref|YP_003769814.1| ribonuclease PH [Amycolatopsis mediterranei U32]
 gi|299799037|gb|ADJ49412.1| ribonuclease PH [Amycolatopsis mediterranei U32]
          Length = 258

 Score =  314 bits (806), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 112/238 (47%), Positives = 160/238 (67%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++Q+R+I +TR   ++  GS L++FG+T +L  A++ E VP W   +  GW+TA
Sbjct: 3   RKDGRNDDQLRDIKITRGFQQWPAGSVLIEFGNTRVLCAASVTEGVPRWRAGSGLGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V GR GGR+ EI R+IGR+LR+ +DL+ALG   I+IDCDVIQA
Sbjct: 63  EYAMLPSATNTRGDRESVKGRIGGRTHEISRLIGRSLRACIDLAALGENTIVIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAA+TG +VAL D +  +   +N+    Q L   VAA+S G++ G   +DL Y E
Sbjct: 123 DGGTRTAAVTGGYVALADAITWL-SAANRLNDPQPLSSSVAAVSVGVVDGRVRLDLPYEE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G ++EVQG+ E ATF++     ML++A    A+L +LQ + ++
Sbjct: 182 DSRAEVDMNVVATDAGTLIEVQGTGEGATFARSTLDTMLDMALAGCAELTRLQNEALA 239


>gi|294011052|ref|YP_003544512.1| ribonuclease PH [Sphingobium japonicum UT26S]
 gi|292674382|dbj|BAI95900.1| ribonuclease PH [Sphingobium japonicum UT26S]
          Length = 238

 Score =  314 bits (805), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 122/237 (51%), Positives = 162/237 (68%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +QMR+I++    + +AEGSCLV FGDT +L TA++EEKVP ++R    GW+T
Sbjct: 1   MRPSGRAPDQMRDITMEPGFTIHAEGSCLVSFGDTRVLCTASIEEKVPPFLRGKGSGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVDL  LG RQI++DCDVIQ
Sbjct: 61  AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDLQKLGERQIVVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+G+WVAL   +  +   ++       +   VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAISGSWVALRIAIDGL--LASGALAEDPIVQKVAAISCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS  + DAN ++T  G   EVQ +AE AT+ ++    +L LA+   A +   Q   
Sbjct: 179 EDSNAEADANLILTGDGKFAEVQATAEGATYDEEELLRLLRLARIGCAQIFAAQDKA 235


>gi|163797073|ref|ZP_02191028.1| molecular chaperone DnaK [alpha proteobacterium BAL199]
 gi|159177589|gb|EDP62142.1| molecular chaperone DnaK [alpha proteobacterium BAL199]
          Length = 243

 Score =  314 bits (805), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 131/238 (55%), Positives = 168/238 (70%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  + +RE+ L    +K+AEGSCLV+FGDTH+L TA++E++VP W++    GW+TA
Sbjct: 8   RPSGRAVDALREVRLEPGFAKHAEGSCLVRFGDTHVLCTASVEDRVPPWLKGGGKGWVTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRST  R  REA  G+Q GR+QEIQR+IGR+LRSV DL ALG RQI +DCDVIQA
Sbjct: 68  EYGMLPRSTHTRTDREAARGKQSGRTQEIQRLIGRSLRSVTDLVALGERQIRVDCDVIQA 127

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITG+WVALH  +  +         S  L   VAAISCG+  G P++DLDY E
Sbjct: 128 DGGTRTAAITGSWVALHQAMSTLLRFGAV--KSLPLTDKVAAISCGIYKGQPVLDLDYAE 185

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  + DANFV+T  G IVE+Q +AE   F +  F  +L LA+  I +L  LQ++ ++
Sbjct: 186 DSNCETDANFVLTGRGGIVEIQATAEAEPFEEAAFHELLRLARKGIGELAVLQEEAVA 243


>gi|269836459|ref|YP_003318687.1| ribonuclease PH [Sphaerobacter thermophilus DSM 20745]
 gi|269785722|gb|ACZ37865.1| ribonuclease PH [Sphaerobacter thermophilus DSM 20745]
          Length = 246

 Score =  314 bits (805), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 115/240 (47%), Positives = 159/240 (66%), Gaps = 4/240 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R +++    + YAEGS L+  G+TH+L TAT+EE+VP ++     GW+TA
Sbjct: 9   RPGGRANDELRPVTIQPGFAPYAEGSALITMGNTHVLCTATIEERVPPFLVGKGQGWVTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPRS+  R+ RE      GGR+QEIQR+IGR+LR+V  L  LG R I+IDCDV++A
Sbjct: 69  EYGMLPRSSPQRIPRE--RSLTGGRTQEIQRLIGRSLRAVTKLDLLGERTILIDCDVLRA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITG +VAL   L+ +        +   L G+VAA+S G++     +DL+Y E
Sbjct: 127 DGGTRTAAITGGYVALRLALERLVRTGQLKAV--PLTGYVAAVSVGVVWDEVRLDLEYEE 184

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  +VD N VMTD G IVEVQG+AE   F +    AML+LA+  +  L++ QK  +S+ 
Sbjct: 185 DSQAEVDCNVVMTDRGDIVEVQGTAEGKPFPRARLDAMLDLAERGVRQLVEYQKAALSSH 244


>gi|119715559|ref|YP_922524.1| ribonuclease PH [Nocardioides sp. JS614]
 gi|166228299|sp|A1SGA2|RNPH_NOCSJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|119536220|gb|ABL80837.1| RNAse PH [Nocardioides sp. JS614]
          Length = 242

 Score =  313 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 117/238 (49%), Positives = 157/238 (65%), Gaps = 2/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R I++TR    +A GS LV+FG T +L  A+  E VP W + +  GW+TA
Sbjct: 6   REDGRADDELRPITITRHWLDHAAGSVLVEFGRTRVLCAASAAEGVPRWRKGSGLGWVTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R  RE+V GR GGR+ EI R+IGR+LR+++D  ALG   I +DCDV+QA
Sbjct: 66  EYAMLPASTNTRSDRESVKGRIGGRTHEISRLIGRSLRAIIDYKALGENTIQLDCDVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D ++H+          + L G VAA+S G++ G P +DL Y E
Sbjct: 126 DGGTRTAAITGAYVALADAVEHLRSTGAL--TGEPLTGSVAAVSVGIIDGVPRLDLPYVE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   + D N VMT SG  VEVQG+AE A F +    A+L LA+   ADL +LQ++ +S
Sbjct: 184 DVRAETDMNVVMTGSGKFVEVQGTAEGAAFDRAELDALLALAEKGCADLTRLQQEALS 241


>gi|94496905|ref|ZP_01303479.1| RNase PH [Sphingomonas sp. SKA58]
 gi|94423581|gb|EAT08608.1| RNase PH [Sphingomonas sp. SKA58]
          Length = 238

 Score =  313 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 123/237 (51%), Positives = 160/237 (67%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +QMR I++    + +AEGSCLV FGDT +L TA++EEKVP ++R    GW+T
Sbjct: 1   MRPSGRAPDQMRNITMEPGFTIHAEGSCLVSFGDTRVLCTASVEEKVPPFLRGKGSGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI++DCDVIQ
Sbjct: 61  AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRTVVDLKALGERQIVVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+G+WVAL   +  +       Q    +   VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTAAISGSWVALRIAVDKLLASGALTQ--DPIIQKVAAISCGIYNGTPVLDLDYA 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS  + DAN ++T  G   EVQ +AE A + ++    +L LA+   A +   Q   
Sbjct: 179 EDSNAETDANLILTGDGKFAEVQATAEGAAYDEEELLRLLRLARIGCAKIFAAQDAA 235


>gi|183984013|ref|YP_001852304.1| ribonuclease RphA [Mycobacterium marinum M]
 gi|183177339|gb|ACC42449.1| ribonuclease RphA [Mycobacterium marinum M]
          Length = 276

 Score =  313 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 108/238 (45%), Positives = 158/238 (66%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+++++R + +TR  ++   GS L++FG T ++ TA++ E VP W + +  GW+TA
Sbjct: 21  REDGRRDDELRPVVITRGFTENPAGSVLIEFGRTKVMCTASVTEGVPRWRKGSGLGWLTA 80

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V GR GGR+QEI R++GR+LR+ +DL+ALG   I +DCDV+QA
Sbjct: 81  EYAMLPSATHTRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAVDCDVLQA 140

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 141 DGGTRTAAITGAYVALADAVNYL-AAAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYEE 199

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VEVQG+ E ATF +     +L++A      L   Q+D ++
Sbjct: 200 DSRAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDMALGACDTLFAAQRDALA 257


>gi|170782454|ref|YP_001710787.1| ribonuclease PH [Clavibacter michiganensis subsp. sepedonicus]
 gi|169157023|emb|CAQ02196.1| ribonuclease PH [Clavibacter michiganensis subsp. sepedonicus]
          Length = 245

 Score =  313 bits (803), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 119/238 (50%), Positives = 156/238 (65%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+REI++ R  S+ AEGS L+ FG T +L TA+   +VP W   +  GW+TA
Sbjct: 7   RHDGRTADQLREITIERDWSEQAEGSALISFGRTRVLCTASFTNRVPRWKAGSGQGWVTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R+ REAV G+ GGR+ EI R+IGR+LR+VVD+ ALG   ++IDCDV+QA
Sbjct: 67  EYAMLPRATNERMDREAVKGKVGGRTHEISRLIGRSLRAVVDMKALGENTVVIDCDVLQA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D L+   +     Q +  LK  VAA+S G++ G P++DL Y E
Sbjct: 127 DGGTRTAAITGAYVALADALEWGRERKFIAQRATPLKDSVAAVSVGIVDGKPLLDLAYVE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   + D N VMT SG  VEVQG+AE A F +    A+L+LA      L  LQ   + 
Sbjct: 187 DVRAETDMNVVMTGSGSFVEVQGTAEGAPFDRAELDALLDLALGGGTTLTALQAQALG 244


>gi|145222946|ref|YP_001133624.1| ribonuclease PH [Mycobacterium gilvum PYR-GCK]
 gi|315443409|ref|YP_004076288.1| RNAse PH [Mycobacterium sp. Spyr1]
 gi|189043767|sp|A4T8F7|RNPH_MYCGI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145215432|gb|ABP44836.1| RNAse PH [Mycobacterium gilvum PYR-GCK]
 gi|315261712|gb|ADT98453.1| RNAse PH [Mycobacterium sp. Spyr1]
          Length = 260

 Score =  313 bits (803), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 109/238 (45%), Positives = 159/238 (66%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R +++TR  + +  GS LV+FG+T ++ TA++ E VP W + +  GW+TA
Sbjct: 4   REDGRLDDELRPVTITRGFTTHPAGSVLVEFGETRVMCTASVTEGVPRWRKGSGQGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R  RE+V GR GGR+QEI R++GR+LR+ +DL+ALG   I IDCDV+QA
Sbjct: 64  EYAMLPAATHDRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAFVALSDAVTYL-GAAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYTE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VE+QG+ E ATF +     ML+ A      L ++Q+  + 
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKMLDAAMAACDQLFEIQRAALE 240


>gi|296129173|ref|YP_003636423.1| ribonuclease PH [Cellulomonas flavigena DSM 20109]
 gi|296020988|gb|ADG74224.1| ribonuclease PH [Cellulomonas flavigena DSM 20109]
          Length = 257

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 110/226 (48%), Positives = 150/226 (66%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+ +++R +++TRR     EGS LV+FG T +L  A+  E VP W + +  GW+T
Sbjct: 1   MRKDGRRADELRPVTITRRFLDAGEGSVLVEFGGTKVLCVASFTEGVPRWRKGSGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  RE+V G+ GGR+ EI R++GR+LR+VVD++ALG   I++DCDV+Q
Sbjct: 61  AEYAMLPRATNSRSDRESVRGKVGGRTHEISRLVGRSLRAVVDVAALGENTIVLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D +              VL+  VAAIS G++ G P++DL Y 
Sbjct: 121 ADGGTRTAAITGAYVALADAVAWATTKRLVKPGRTVLRDSVAAISVGVVDGVPVLDLPYE 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           ED   + D N V T +G  VEVQG+AE A F +    A+L+LA   
Sbjct: 181 EDVRAETDMNVVTTGAGAFVEVQGTAEHAPFDRAELDALLDLAVAG 226


>gi|319942267|ref|ZP_08016582.1| ribonuclease PH [Sutterella wadsworthensis 3_1_45B]
 gi|319804140|gb|EFW01040.1| ribonuclease PH [Sutterella wadsworthensis 3_1_45B]
          Length = 277

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 118/240 (49%), Positives = 157/240 (65%), Gaps = 2/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  + +R + +TRR +KYAEGS L+  GDTH+L TA++   VP ++R    GW+TA
Sbjct: 35  RPDGRAVDALRPVEITRRFTKYAEGSVLMCAGDTHVLCTASVTVGVPNFLRGKGEGWVTA 94

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYG+LPRSTG R  REA  G+Q GR+QEIQR+IGR+LR+VVD   LG   I IDCDV+QA
Sbjct: 95  EYGLLPRSTGTRTDREAARGKQTGRTQEIQRLIGRSLRAVVDRKKLGEHTIQIDCDVLQA 154

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+ITGAW+AL D +  M   +        +   V+A+S GM  G P++DL+Y E
Sbjct: 155 DGGTRCASITGAWIALRDAVDWM--LAKGMISEDPILAQVSAVSVGMWSGEPVLDLNYAE 212

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  D D N VMT +G  VE+QG+AE   FS+     +L LAK   A+L   Q+  ++ +
Sbjct: 213 DSASDTDMNVVMTSAGKYVEIQGTAEGDPFSEGDLAKLLALAKKGNAELAAFQRKALTEK 272


>gi|159036643|ref|YP_001535896.1| ribonuclease PH [Salinispora arenicola CNS-205]
 gi|189043771|sp|A8M4I1|RNPH_SALAI RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|157915478|gb|ABV96905.1| ribonuclease PH [Salinispora arenicola CNS-205]
          Length = 241

 Score =  312 bits (801), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 114/239 (47%), Positives = 159/239 (66%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  + +R ++LTR  S + EGS LV+FG T +L TA++ E VP W + +  GW+TA
Sbjct: 3   RPDGRLPDHLRPVTLTRGWSTHPEGSVLVEFGATRVLCTASVTEGVPRWRKGSGLGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+ +DL ALG   +++DCDV+QA
Sbjct: 63  EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRASIDLKALGENSVVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKF-QLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTAAITGA+VAL+D +  +    +   +   V+   VAA+S G++ G P +DL+Y 
Sbjct: 123 DGGTRTAAITGAYVALYDAVTWLAARRSLAGRPENVMHRSVAAVSVGVVAGEPRLDLNYD 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+T +VD N V T +G  VEVQG+ E   FS+    A+L+LA     DL + Q+  +S
Sbjct: 183 EDATAEVDLNVVCTGTGDFVEVQGTGEAGVFSRGQLDALLDLAVAGCLDLAEAQRKALS 241


>gi|148553491|ref|YP_001261073.1| ribonuclease PH [Sphingomonas wittichii RW1]
 gi|166228323|sp|A5V3R9|RNPH_SPHWW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|148498681|gb|ABQ66935.1| RNAse PH [Sphingomonas wittichii RW1]
          Length = 238

 Score =  312 bits (801), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 120/237 (50%), Positives = 163/237 (68%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  +QMR IS+    + +AEGS L+ FGDT +L TA++EEKVP ++R    GW+T
Sbjct: 1   MRPSGRAPDQMRAISIETGFTVHAEGSVLISFGDTRVLVTASVEEKVPPFLRGKGQGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVD++ LG RQI+IDCDV+Q
Sbjct: 61  AEYGMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDMAKLGERQIVIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+G WVAL   +  +   ++       +   VAAISCG+  G P++DLDY 
Sbjct: 121 ADGGTRTASISGGWVALRLAVDKL--LASGAIAEDPITAQVAAISCGIHEGTPVLDLDYI 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS    DANFV+ D+G+I E Q +AE AT+ ++    +L LA+    ++   Q+  
Sbjct: 179 EDSNAHADANFVLLDNGNIAEAQATAEGATYDEEALLRLLRLARIGCGEIFAAQRKA 235


>gi|169628575|ref|YP_001702224.1| ribonuclease PH [Mycobacterium abscessus ATCC 19977]
 gi|226736919|sp|B1MLZ3|RNPH_MYCA9 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|169240542|emb|CAM61570.1| Probable ribonuclease PH [Mycobacterium abscessus]
          Length = 258

 Score =  312 bits (801), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 114/238 (47%), Positives = 158/238 (66%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ++++R +++TR  + +  GS L++FG T ++ TA+  E VP W + +  GW+TA
Sbjct: 4   REDGRQDDELRPVTITRGFTSHPAGSVLIEFGQTRVMCTASATEGVPRWRKGSGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R  RE+V GR GGR+QEI R+IGR+LR+ +DLSALG   I IDCDV+QA
Sbjct: 64  EYAMLPASTHTRSDRESVKGRVGGRTQEISRLIGRSLRACIDLSALGENTIAIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++     K    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVTYLAAHG-KLADDEPLSCAIAAVSVGVVDGRVRVDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VEVQG+ E ATF++     +L+ A      L  LQK+ ++
Sbjct: 183 DSRAEVDMNVVATDTGTLVEVQGTGEGATFARSTLDKLLDAAVGAADQLFVLQKEALA 240


>gi|145593656|ref|YP_001157953.1| ribonuclease PH [Salinispora tropica CNB-440]
 gi|189043773|sp|A4X3X5|RNPH_SALTO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|145302993|gb|ABP53575.1| RNAse PH [Salinispora tropica CNB-440]
          Length = 241

 Score =  312 bits (801), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 114/239 (47%), Positives = 159/239 (66%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  + +R ++LTR  S + EGS LV+FG T +L TA++ E VP W + +  GW+TA
Sbjct: 3   RPDGRLPDHLRPVTLTRGWSTHPEGSVLVEFGATRVLCTASVTEGVPRWRKGSGLGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+ +DL ALG   I++DCDV+QA
Sbjct: 63  EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRASIDLKALGENSIVLDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-VLKGHVAAISCGMLCGYPIVDLDYG 180
           DGGTRTAAITGA+VALHD +  +    +     + V+   VAA+S G++ G P +DL+Y 
Sbjct: 123 DGGTRTAAITGAYVALHDAVTWLAARRSLAGRPETVMHRSVAAVSVGVVAGEPRLDLNYA 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED++ +VD N V T +G  VEVQG+ E   FS+    A+L+LA     +L + Q+  +S
Sbjct: 183 EDASAEVDLNVVCTGAGDFVEVQGTGEAGVFSRGQLDALLDLAVAGCVELAEAQRKALS 241


>gi|28493589|ref|NP_787750.1| ribonuclease PH [Tropheryma whipplei str. Twist]
 gi|28572785|ref|NP_789565.1| ribonuclease PH [Tropheryma whipplei TW08/27]
 gi|28410918|emb|CAD67303.1| ribonuclease PH [Tropheryma whipplei TW08/27]
 gi|28476631|gb|AAO44719.1| ribonuclease PH [Tropheryma whipplei str. Twist]
          Length = 256

 Score =  312 bits (801), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 106/238 (44%), Positives = 151/238 (63%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R + R  +++R + + R  + YAEGS L+ FG+T +L  AT +  VP ++R  + GWIT
Sbjct: 20  LRKNSRAHDEIRPVKIIRGWNIYAEGSALIAFGNTRVLCNATFQRGVPPFLRGQRSGWIT 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRS   R  RE+V G+  GRS EI R+IGR++R+++D  AL    II+DCDV+Q
Sbjct: 80  AEYAMLPRSGTERSDRESVKGKISGRSHEISRLIGRSMRAILDRYALEENTIILDCDVLQ 139

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG+++AL+D L   ++   K      L   V+A+S G++     +DLDY 
Sbjct: 140 ADGGTRTAAITGSYIALYDALVWAKN--QKILSKHPLTDSVSAVSVGLVGDQIFLDLDYS 197

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS    D N V T SG +VE+QG+AE++ FS   F  M+ LAK     L ++Q   +
Sbjct: 198 EDSNAQADINLVFTGSGKLVEIQGTAEKSPFSYGQFEQMMELAKTGCQALKEIQAASL 255


>gi|169831661|ref|YP_001717643.1| ribonuclease PH [Candidatus Desulforudis audaxviator MP104C]
 gi|226736902|sp|B1I4W9|RNPH_DESAP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|169638505|gb|ACA60011.1| ribonuclease PH [Candidatus Desulforudis audaxviator MP104C]
          Length = 261

 Score =  312 bits (800), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 117/240 (48%), Positives = 163/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR   QMR + +TR  +KYAEGS L++ GDT ++ TA+++ +VP +++    GW+T
Sbjct: 2   IRVDGRAPAQMRPVYITRHYNKYAEGSALIEVGDTRVICTASIDNRVPTFLKGAGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AE+GMLPR+TG R  RE+V G  GGRS EIQR+IGR+LR+VVDL ALG R +I+DCDVIQ
Sbjct: 62  AEFGMLPRATGVRGIRESVKGHPGGRSLEIQRLIGRSLRAVVDLPALGERTVILDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG +VAL D +Q +   +        +  +VAA S G+  G  ++DL + 
Sbjct: 122 ADGGTRTAAITGGFVALVDAMQTL--VTEGVTPRLPVLDYVAATSVGLFEGEAVLDLCFA 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  +VD N VMT +G  VEVQG+ E  TF +     +L+LA   I  L++ Q+ V+ +
Sbjct: 180 EDSAAEVDFNVVMTGTGRFVEVQGTGEGTTFERADVDRLLDLAVVGIRSLVEQQRAVLGS 239


>gi|61216045|sp|Q83FT1|RNPH_TROWT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|61216046|sp|Q83HF6|RNPH_TROW8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
          Length = 247

 Score =  312 bits (800), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 106/238 (44%), Positives = 151/238 (63%), Gaps = 2/238 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R + R  +++R + + R  + YAEGS L+ FG+T +L  AT +  VP ++R  + GWIT
Sbjct: 11  LRKNSRAHDEIRPVKIIRGWNIYAEGSALIAFGNTRVLCNATFQRGVPPFLRGQRSGWIT 70

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRS   R  RE+V G+  GRS EI R+IGR++R+++D  AL    II+DCDV+Q
Sbjct: 71  AEYAMLPRSGTERSDRESVKGKISGRSHEISRLIGRSMRAILDRYALEENTIILDCDVLQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG+++AL+D L   ++   K      L   V+A+S G++     +DLDY 
Sbjct: 131 ADGGTRTAAITGSYIALYDALVWAKN--QKILSKHPLTDSVSAVSVGLVGDQIFLDLDYS 188

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS    D N V T SG +VE+QG+AE++ FS   F  M+ LAK     L ++Q   +
Sbjct: 189 EDSNAQADINLVFTGSGKLVEIQGTAEKSPFSYGQFEQMMELAKTGCQALKEIQAASL 246


>gi|86159780|ref|YP_466565.1| ribonuclease PH [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123496476|sp|Q2IEX1|RNPH_ANADE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|85776291|gb|ABC83128.1| RNAse PH [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 239

 Score =  312 bits (800), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 125/241 (51%), Positives = 166/241 (68%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR    +R I L  RVSK+AEGSCLV+FGDTH+L TA+++EKVP  +  T  GW+T
Sbjct: 1   MRKNGRGPLDLRPILLEPRVSKHAEGSCLVRFGDTHVLCTASVDEKVPPHVYGTGAGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R++REA  G+Q GR+ EIQR++GRALR+ VDL A+G R + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHERMQREAARGKQTGRTLEIQRLVGRALRAAVDLRAIGPRTVTLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL   ++ ++    K      +K  VAA+S G++ G   +DLDY 
Sbjct: 121 ADGGTRTAAITGAYVALVQAVRSIQK--RKQLAHDPVKRSVAAVSVGIVAGEVHLDLDYD 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDST +VD N V T  G +VEVQG+AE   F++     ML+ A   ++ L +LQ+  +  
Sbjct: 179 EDSTAEVDMNVVATGEGALVEVQGTAEGKPFARAELDRMLDAALAGLSRLKELQEAALRT 238

Query: 241 E 241
            
Sbjct: 239 P 239


>gi|260654137|ref|ZP_05859627.1| tRNA nucleotidyltransferase [Jonquetella anthropi E3_33 E1]
 gi|260631122|gb|EEX49316.1| tRNA nucleotidyltransferase [Jonquetella anthropi E3_33 E1]
          Length = 250

 Score =  312 bits (800), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 107/239 (44%), Positives = 162/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R +GR    +R+ISLT  V+++AEGSCLV++G+T +L TA+++ KVP ++R +  GW+T
Sbjct: 6   LRNNGRGACDLRKISLTLDVNRWAEGSCLVEWGETKVLCTASVDNKVPPFLRGSGQGWVT 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  RE+V GRQ GRS EI R+IGR+LR+ VDL+ LG   + +DCDV+Q
Sbjct: 66  AEYAMLPRATSSRTVRESVKGRQSGRSMEISRLIGRSLRASVDLAQLGELTVTLDCDVLQ 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA++AL   ++ +   +     +   +  VAA+S G + G  + DLDY 
Sbjct: 126 ADGGTRTASITGAFLALAGAVRSL--IAGGRIAASPFRMPVAAVSIGKVDGQILTDLDYS 183

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  +VD N V   +G  +E+QG+ E  TFS+     +L+  ++ +A + +LQ+  + 
Sbjct: 184 EDSRAEVDFNVVGNGNGVFIELQGTGEGGTFSRSELNELLDCGENALAQITELQRKTMG 242


>gi|332295803|ref|YP_004437726.1| Ribonuclease PH [Thermodesulfobium narugense DSM 14796]
 gi|332178906|gb|AEE14595.1| Ribonuclease PH [Thermodesulfobium narugense DSM 14796]
          Length = 241

 Score =  312 bits (800), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 103/240 (42%), Positives = 157/240 (65%), Gaps = 3/240 (1%)

Query: 1   MRLSG-RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           MRL   R+ +++R I + +    Y EGS L+ FG+T ++  A++E+KVP +++ +  GWI
Sbjct: 1   MRLDKSRKNDELRHIEIIKDFLIYPEGSVLISFGNTKVICNASVEDKVPPFLKGSGSGWI 60

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           T+EY M+PR+T +R  RE+ SG+  GR+QEIQR+IGR+LRS VDLS LG R I ID +VI
Sbjct: 61  TSEYSMIPRATQDRNVRESTSGKISGRNQEIQRIIGRSLRSAVDLSLLGERTIYIDAEVI 120

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QAD GTR A+ITG +VAL   L+ +++       +  LK +VAA+S  +L    I+D ++
Sbjct: 121 QADAGTRCASITGGFVALVLALRKLKEYG--LIKTSPLKYYVAAVSVAVLNDEVILDPNF 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED   DVD N +  ++  I+E+QG+AE+  FS++    +L +A   I  +I +QK V+ 
Sbjct: 179 EEDVIADVDLNIIANENREIIEIQGTAEKKPFSKEKLNEILYIAYSGIEKIIAIQKKVLK 238


>gi|300087418|ref|YP_003757940.1| ribonuclease PH [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527151|gb|ADJ25619.1| ribonuclease PH [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 240

 Score =  312 bits (800), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 107/239 (44%), Positives = 153/239 (64%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  N MR +++T     +A+GS L++ G T ++ + ++EE+VP ++RN+  GW+TA
Sbjct: 3   RIDGRAANAMRPVTITPGFQAFADGSVLIEQGKTRVICSVSMEERVPAFLRNSGTGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T +R  RE+V G+  GRSQEIQR+IGR+LR+V DLSALG R  ++DCDVIQA
Sbjct: 63  EYAMLPRATTSRTPRESVKGKVSGRSQEIQRLIGRSLRAVTDLSALGERSFVVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTAAITG +VAL+  L  +            L+  VAAIS  M     ++D  Y E
Sbjct: 123 DAGTRTAAITGGYVALYLALNKLFRLG--VFKEMPLRAQVAAISVVMRQNNLLLDPVYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   D D N VM   G  +E+QG+AE+  F ++   A+L LA+  I  L ++Q+  ++ 
Sbjct: 181 DCGADADFNLVMNSKGEFLEIQGTAEQRPFKRNTLDAVLGLAEKGIGQLFEIQQTTLAG 239


>gi|330859984|emb|CBX70312.1| ribonuclease PH [Yersinia enterocolitica W22703]
          Length = 239

 Score =  312 bits (799), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 116/230 (50%), Positives = 155/230 (67%), Gaps = 2/230 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R   Q+R ++LTR  +K+AEGS LV+FGDT +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPADRAAQQVRPLTLTRNYTKHAEGSVLVEFGDTKVLCTATVEEGVPRFLKGQGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST +R  REA  G+QGGR+ EIQR+I R+LR+ VDL  LG   I +DCDV+Q
Sbjct: 61  AEYGMLPRSTHSRNAREAAKGKQGGRTLEIQRLIARSLRAAVDLKKLGEFTITLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GA VAL D L  +         +  +KG VAA+S G++ G  + DL+Y 
Sbjct: 121 ADGGTRTASISGACVALADALNKLVASGKL--KANPMKGLVAAVSVGIVKGEALCDLEYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           EDS  + D N VM + G ++EVQG+AE   FS +    +L LA+  I  +
Sbjct: 179 EDSAAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALARGGIETI 228


>gi|326403855|ref|YP_004283937.1| ribonuclease PH [Acidiphilium multivorum AIU301]
 gi|325050717|dbj|BAJ81055.1| ribonuclease PH [Acidiphilium multivorum AIU301]
          Length = 243

 Score =  312 bits (799), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 117/237 (49%), Positives = 162/237 (68%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  + +R++ +    S++AEGS L++ G T +L  A++E +VP ++R    GW+TA
Sbjct: 6   RPSGRMADALRQVEIVTGFSRHAEGSALIRMGGTEVLCAASVEGRVPGFLRGAGQGWVTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVD +ALG   I +DCDV+ A
Sbjct: 66  EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVVDRTALGEMTITLDCDVLNA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR AAITGAWVAL   ++ +   +     +  L G VAA+SCG+  G P++DLDY E
Sbjct: 126 DGGTRCAAITGAWVALALAIRTLRKAN--VIATDPLIGQVAAVSCGVFGGVPVLDLDYAE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  + DANFV+T +G IVE+Q +AERATF +  F  +L LA+   A+L   Q+  +
Sbjct: 184 DSNAEADANFVLTGTGGIVEIQATAERATFEEATFGTLLGLARKGTAELFTAQRAAL 240


>gi|330991184|ref|ZP_08315137.1| Ribonuclease PH [Gluconacetobacter sp. SXCC-1]
 gi|329761770|gb|EGG78261.1| Ribonuclease PH [Gluconacetobacter sp. SXCC-1]
          Length = 253

 Score =  312 bits (799), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 114/242 (47%), Positives = 160/242 (66%), Gaps = 2/242 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  + +R + +    +++AEGS L++ G T +L  A++E +VP ++R    GW+T
Sbjct: 12  MRPSGRATDALRPVFIQTGFARHAEGSALIRMGGTEVLCAASVETRVPSFLRGKGQGWVT 71

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R  REA  GRQ GR+QEIQR+I R+LR+V DL ALG   I +DCDV+ 
Sbjct: 72  AEYGMLPRATHSRGPREAAKGRQSGRTQEIQRLIARSLRAVTDLRALGEISITVDCDVLN 131

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR AAITGAWVAL   L+ +         +  LKG VAA+SCG+     ++DLDY 
Sbjct: 132 ADGGTRCAAITGAWVALRLALETLVRAGTL--PAVPLKGQVAAVSCGLTQEGAVLDLDYA 189

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDST   D+NFV+T  G IVE+QG+AE+  F++  F  ++ LA+   A+L ++Q   +  
Sbjct: 190 EDSTARADSNFVLTADGGIVEIQGTAEQDPFTEAQFNTLMRLARTGTAELFRIQTATVEE 249

Query: 241 EV 242
            +
Sbjct: 250 AL 251


>gi|114571545|ref|YP_758225.1| ribonuclease PH [Maricaulis maris MCS10]
 gi|122314919|sp|Q0AKA6|RNPH_MARMM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|114342007|gb|ABI67287.1| RNAse PH [Maricaulis maris MCS10]
          Length = 238

 Score =  311 bits (798), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 129/240 (53%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR  + MREI L   VS YAEGSCL +FG TH+L TA++EE VP W+R    GW+T
Sbjct: 1   MRPHGRARDAMREIKLEAGVSVYAEGSCLARFGGTHVLCTASIEESVPPWMRGGGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI IDCDV+Q
Sbjct: 61  AEYGMLPRATHTRSRREATAGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITIDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVAL     ++ +       S  + G +AAISCG++ G   +DL+Y 
Sbjct: 121 ADGGTRTAAITGAWVALKQATGYLIE--EGLLTSDPVHGQLAAISCGVIDGETRLDLEYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   + DANFV+TD+G IVE+Q +AE     +  F  +  LAK  + DL + Q   +  
Sbjct: 179 EDRRAEADANFVLTDTGGIVEIQATAEDKPIPETDFDLLFALAKAGVVDLCEAQLAALKG 238


>gi|315924264|ref|ZP_07920488.1| tRNA nucleotidyltransferase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622425|gb|EFV02382.1| tRNA nucleotidyltransferase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 247

 Score =  311 bits (798), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 117/238 (49%), Positives = 156/238 (65%), Gaps = 3/238 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  N+ R   + R  +K+A GS L+  GDT ++ TA  EE VP ++R    GW+TA
Sbjct: 10  RQDGRFYNEGRPTQVMRHFTKHAHGSVLMAVGDTKVICTAMCEETVPGFMRGEGRGWVTA 69

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +R+  +G+  GRS EIQR+IGR+LR+V+D+  LG R I IDCDVIQA
Sbjct: 70  EYSMLPSATETRKRRD-RNGKTDGRSVEIQRLIGRSLRAVMDMETLGERTIRIDCDVIQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRT AITGA++AL DC+  + D          ++G VAA S G+  G PI+DL Y E
Sbjct: 129 DGGTRTTAITGAFIALWDCVASLLDSG--MIEKNPIRGFVAATSVGVWQGTPILDLCYLE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N VMTD G I+E+QG+ E   F++D F  ++ L +D IA LI +QKDV+ 
Sbjct: 187 DSHAEVDMNLVMTDDGRIIEIQGTGEARPFTRDEFDRLMALGQDGIAHLIAVQKDVLG 244


>gi|118467865|ref|YP_889156.1| ribonuclease PH [Mycobacterium smegmatis str. MC2 155]
 gi|166228292|sp|A0R1W8|RNPH_MYCS2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|118169152|gb|ABK70048.1| ribonuclease PH [Mycobacterium smegmatis str. MC2 155]
          Length = 259

 Score =  311 bits (798), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 110/237 (46%), Positives = 156/237 (65%), Gaps = 1/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  + +  GS LV+FG T ++ TA++ E VP W + +  GW+TA
Sbjct: 4   REDGRLDDELRPVVITRGFTSHPAGSVLVEFGQTRVMCTASVTEGVPRWRKGSGQGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R  RE+V GR GGR+QEI R+IGR+LR+ +DL+ALG   I IDCDV+QA
Sbjct: 64  EYAMLPAATHDRSDRESVKGRIGGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  +   + +    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALSDAVTWL-AAAGRLSDPRPLSCAIAAVSVGVVDGRVRVDLPYSE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  +VD N V TD+G +VE+QG+ E ATF +     ML+ A      L  LQ++ +
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKMLDAALGATEQLFVLQREAL 239


>gi|182416017|ref|YP_001821083.1| ribonuclease PH [Opitutus terrae PB90-1]
 gi|177843231|gb|ACB77483.1| ribonuclease PH [Opitutus terrae PB90-1]
          Length = 260

 Score =  311 bits (797), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 105/241 (43%), Positives = 148/241 (61%), Gaps = 4/241 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GWI 59
           R  GR  +Q+R I+    ++ YA GS LV FG T ++  A +E KVP+W+R      GW+
Sbjct: 17  RSDGRHPDQLRPITFEANIAPYATGSVLVSFGSTRVICAAMIEPKVPLWMRQQGVRGGWL 76

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           TAEY MLP ST +R  R+   G+  GR+ EIQR+IGR+LR+VVDL  LG   + IDCDV+
Sbjct: 77  TAEYSMLPYSTLDRKPRDISKGKLDGRTVEIQRLIGRSLRAVVDLMKLGENTLWIDCDVL 136

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTRTA+ITGA++A    +Q + D          +   VAA+S G+  G  ++DL+Y
Sbjct: 137 QADGGTRTASITGAYLATRLAVQRLVDAGKL--AENPVLDSVAAVSAGVCGGQELLDLNY 194

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED   +VDAN VMT  G  VE+Q S E ATF+ +   ++  LA+  + ++  LQ   ++
Sbjct: 195 VEDKDAEVDANIVMTGRGQFVEMQSSGEEATFTHEQLLSLTALAQKGLKEIAALQTAFLT 254

Query: 240 N 240
            
Sbjct: 255 K 255


>gi|332711140|ref|ZP_08431074.1| RNAse PH [Lyngbya majuscula 3L]
 gi|332350122|gb|EGJ29728.1| RNAse PH [Lyngbya majuscula 3L]
          Length = 234

 Score =  311 bits (797), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 103/234 (44%), Positives = 149/234 (63%), Gaps = 4/234 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   RQ +Q+R I   R  ++YA GS L   G+T +L T T++E+VP ++++T  GW+TA
Sbjct: 5   RPDNRQPDQLRPILFEREFTRYAPGSVLAHCGETKVLCTVTVQEEVPRFLKDTGSGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE +  +  GR+QEIQR+IGR+LR+ VDL ALG R + +D DVIQA
Sbjct: 65  EYRMLPGATPERQRRELL--KLSGRTQEIQRLIGRSLRAAVDLKALGERTLTVDADVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRT +ITG +VAL D +  +            L   VAA+S G+L G P +DL+Y E
Sbjct: 123 DAGTRTTSITGGYVALVDAVDKLVKTG--VLERSPLIHQVAAVSVGLLEGEPFLDLNYIE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D   +VD N VM D   I+EVQG+AE   +++     +++LA+  I +L++ Q+
Sbjct: 181 DVAAEVDFNVVMNDEMGIIEVQGTAESGAYTRHQLNQLIDLAEKGIKELLEAQR 234


>gi|88856298|ref|ZP_01130957.1| ribonuclease PH [marine actinobacterium PHSC20C1]
 gi|88814382|gb|EAR24245.1| ribonuclease PH [marine actinobacterium PHSC20C1]
          Length = 255

 Score =  311 bits (797), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 113/233 (48%), Positives = 155/233 (66%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ N++R++++ R  S  AEGS L+ FG T +L TA+    VP W+     GW+TA
Sbjct: 3   RHDGRENNELRKVTIERGWSDQAEGSALISFGKTKVLCTASFTNGVPRWMAGKGKGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST +R+ REAV G+ GGR+ EI R+IGR+LR+VVD+ ALG   I+IDCDV+QA
Sbjct: 63  EYSMLPRSTNSRMDREAVKGKVGGRTHEISRLIGRSLRAVVDMKALGENTIVIDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D ++   +     + S+ L   +AA+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAIEWGREKKFIGKNSKALFDSLAAVSVGIIDGEPMLDLAYVE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D   + D N V+T  G  VEVQG+AE A F +    ++L+LA     DL  +Q
Sbjct: 183 DVRAETDMNVVVTGRGLFVEVQGTAEGAPFDRRELDSLLDLALAGAVDLTAMQ 235


>gi|329119666|ref|ZP_08248347.1| tRNA nucleotidyltransferase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464263|gb|EGF10567.1| tRNA nucleotidyltransferase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 241

 Score =  311 bits (797), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 112/234 (47%), Positives = 159/234 (67%), Gaps = 2/234 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  + +R + +T     +A+GS L++ G+T ++ TA+++E VP ++R    GWITAEYGM
Sbjct: 9   RAADALRPVRITPHFLPHADGSALIECGNTRVICTASIDENVPPFLRGQGQGWITAEYGM 68

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP +T  R +REA +G+Q GR+QEIQR+IGR+LR+  DL  LG RQI+IDCDVIQADGGT
Sbjct: 69  LPAATATRSRREAAAGKQSGRTQEIQRLIGRSLRAAADLQKLGERQILIDCDVIQADGGT 128

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTA+ITGA+VAL   ++ +   S+       L   +AA+S G++ G P++DLDY EDS  
Sbjct: 129 RTASITGAYVALALAVRKL--LSDGLIAENPLVSQIAAVSAGIVGGVPLLDLDYPEDSGC 186

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D D N VM  +G I+E+QG+AE A FS     A+L LA+  I +L+  QK  ++
Sbjct: 187 DSDVNIVMNGAGGIIEIQGTAEGAPFSPAELAALLRLAQKGIGELMAEQKRALA 240


>gi|187734903|ref|YP_001877015.1| ribonuclease PH [Akkermansia muciniphila ATCC BAA-835]
 gi|187424955|gb|ACD04234.1| ribonuclease PH [Akkermansia muciniphila ATCC BAA-835]
          Length = 270

 Score =  311 bits (797), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 109/242 (45%), Positives = 149/242 (61%), Gaps = 4/242 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGWI 59
           R   R  +Q+R IS    ++  A  S LV FG T ++   T+EE VP W++    + GW+
Sbjct: 12  RQDKRLVDQLRPISFETGIAPNATASVLVTFGRTKVICAVTIEEDVPRWMKVQRVEGGWL 71

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           TAEY MLP ST +R +R+  +G+  GRS EIQR+IGR+LR+ VDL  +G R I +DCDV+
Sbjct: 72  TAEYSMLPYSTLDRKRRDITAGKLDGRSSEIQRLIGRSLRAAVDLGKIGQRTIWVDCDVL 131

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTRTA+ITGA VAL   +  +            +K  V+A+S G+L G  ++DL Y
Sbjct: 132 QADGGTRTASITGASVALAIAVNKLVAEGKL--AESPMKRLVSAVSVGILEGEALLDLCY 189

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED   +VD N VMTD G  VEVQGS E A F+ D    ML L +  + ++ +LQ+ VI+
Sbjct: 190 VEDKDAEVDMNLVMTDQGEFVEVQGSGEEAVFTADQMNRMLELGRKGLEEIAELQRQVIA 249

Query: 240 NE 241
            E
Sbjct: 250 EE 251


>gi|187478429|ref|YP_786453.1| ribonuclease PH [Bordetella avium 197N]
 gi|115423015|emb|CAJ49545.1| ribonuclease PH [Bordetella avium 197N]
          Length = 244

 Score =  310 bits (796), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 115/237 (48%), Positives = 158/237 (66%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  + +R  SL R  ++YAEGS LV  G+T +L TA++ EKVP +++    GW+T
Sbjct: 8   LRADGRAVDTLRAFSLKRGFTRYAEGSVLVVAGNTQVLCTASVLEKVPPFLKGKGEGWVT 67

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V DL ALG R + +DCDV+Q
Sbjct: 68  AEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVFDLKALGERTLHLDCDVLQ 127

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITGAWVA  D +  + +          ++ HVAA+S G++ G  ++DL+Y 
Sbjct: 128 ADGGTRCASITGAWVAAADAVALLME--RGLLTQNPIRDHVAAVSVGLVGGRAVLDLNYE 185

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS  + D N +MT +G  VEVQG+ E ATF++     ML LA+  IA L+  Q+  
Sbjct: 186 EDSACEADVNVIMTGAGAFVEVQGTGEEATFTRAQLDTMLTLAEGGIAKLVAEQRAA 242


>gi|119493583|ref|ZP_01624247.1| ribonuclease PH [Lyngbya sp. PCC 8106]
 gi|119452573|gb|EAW33756.1| ribonuclease PH [Lyngbya sp. PCC 8106]
          Length = 241

 Score =  310 bits (796), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 94/240 (39%), Positives = 148/240 (61%), Gaps = 4/240 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL  R+ +Q+R +      ++Y+  S L K G+T ++   T++  VP +++++  GW+TA
Sbjct: 5   RLDDRKPDQLRPVHFELNYTRYSSASVLTKCGNTQVICNVTIQPGVPNFLKDSGQGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE +  +  GR+QEIQR+IGR+LR+ VDL  LG + +IID DV+QA
Sbjct: 65  EYRMLPGATQQRHSRELM--KLSGRTQEIQRLIGRSLRAAVDLKVLGEKTVIIDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTA+ITG +VAL +    + D     +    +   +AAIS G+L G P +DL+Y E
Sbjct: 123 DAGTRTASITGGFVALANAFNKLVDKGELEK--SPISHQIAAISVGLLEGEPYLDLNYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D   DVD N VM D   ++E+QG+AE  +F++     +++ A+  I  L++ Q   + ++
Sbjct: 181 DVAADVDCNIVMNDQLGMIELQGTAEAESFTRQQLNKIMDYAEIGIKQLLEAQNQALKSD 240


>gi|320530746|ref|ZP_08031790.1| ribonuclease PH [Selenomonas artemidis F0399]
 gi|320137033|gb|EFW28971.1| ribonuclease PH [Selenomonas artemidis F0399]
          Length = 248

 Score =  310 bits (796), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 107/242 (44%), Positives = 153/242 (63%), Gaps = 5/242 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R+ +Q+R + + R   +Y  GS L++ G T ++ +AT+EE+VP +++ +  GW+TA
Sbjct: 3   RRDLRRPDQLRPVRIERGYQRYPAGSALIEMGHTRVVCSATVEERVPFFLKGSGTGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +   R  REA  GRQ GR+QEIQR+IGRALR+VVD  ALG R I IDCDV+QA
Sbjct: 63  EYAMLPGAGTERTAREAARGRQTGRTQEIQRLIGRALRAVVDTRALGERTIHIDCDVVQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYG 180
           DGGTRTA+ITGA+VAL +           F     ++ + AA+S G+     P++D+ Y 
Sbjct: 123 DGGTRTASITGAFVALVEACATFYTKRGVF----PVRDYAAAVSVGIGAENTPLLDICYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED+   VD N VMT +G  +EVQG+ E   FS+    A+L+L +  I +LI +QK  +  
Sbjct: 179 EDAQAMVDMNLVMTGAGSFIEVQGTGEGRAFSRAEMNALLDLGERGIRELIDVQKRALGE 238

Query: 241 EV 242
            +
Sbjct: 239 TL 240


>gi|317050733|ref|YP_004111849.1| ribonuclease PH [Desulfurispirillum indicum S5]
 gi|316945817|gb|ADU65293.1| ribonuclease PH [Desulfurispirillum indicum S5]
          Length = 244

 Score =  310 bits (796), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 108/242 (44%), Positives = 152/242 (62%), Gaps = 3/242 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  +++R I++TR  +KYAEGS L+  G+T +L  AT+++ VP ++     GW+T
Sbjct: 1   MRT-QRAPHELRPITITRNYTKYAEGSVLIAMGETIVLCNATVQKTVPRFLIGKDSGWVT 59

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  GR  GR+ EIQR+IGR+LRS++DL A+    I IDCDV+Q
Sbjct: 60  AEYSMLPRATDVRNRRESQQGRPSGRTMEIQRLIGRSLRSIIDLHAMSGYTITIDCDVLQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A++ GA++AL D +  M   +        L+  VAAIS G+   +P+ DLDY 
Sbjct: 120 ADGGTRCASVNGAFIALADAVDSM--LAAGMIGESPLRSTVAAISVGIFNNWPLADLDYL 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS   VD N V T  G  VE+QG+ E   FS+     +L LA D I  +  LQ + +S 
Sbjct: 178 EDSQAMVDMNVVATGKGEFVEIQGTGESRPFSRKDHDILLELALDGIGQISALQFEQLSA 237

Query: 241 EV 242
           ++
Sbjct: 238 QI 239


>gi|58039735|ref|YP_191699.1| ribonuclease PH [Gluconobacter oxydans 621H]
 gi|58002149|gb|AAW61043.1| Ribonuclease PH [Gluconobacter oxydans 621H]
          Length = 240

 Score =  310 bits (795), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 117/239 (48%), Positives = 158/239 (66%), Gaps = 7/239 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  ++ R +S+    +++AEGS L++ G T +L TAT+E++VP ++RN   GWITA
Sbjct: 8   RPSGRAPDENRIVSIETGFARHAEGSALIRVGGTEVLCTATIEDRVPPFLRNKGQGWITA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T +R +REA  G+Q GR+QEIQR+I R+LR+ VDL  +G R I +DCDV+ A
Sbjct: 68  EYGMLPRATHSRGQREAAKGKQSGRTQEIQRLIARSLRACVDLKKIGERTITLDCDVLNA 127

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+ITGAWVAL   L        K + SQ L   VAA+SCG+     ++DLDY E
Sbjct: 128 DGGTRCASITGAWVALSLAL-------KKAKRSQALTAQVAAVSCGLTDAGAVLDLDYVE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS+   D NFV+T  G I+E+QG+AE   F +  FF +L LAK   A L + Q   +  
Sbjct: 181 DSSAQADTNFVLTADGGIIEIQGTAEDKPFQESEFFELLRLAKLGTARLFEAQNKALET 239


>gi|332655285|ref|ZP_08421025.1| tRNA nucleotidyltransferase [Ruminococcaceae bacterium D16]
 gi|332515790|gb|EGJ45400.1| tRNA nucleotidyltransferase [Ruminococcaceae bacterium D16]
          Length = 237

 Score =  309 bits (793), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 102/238 (42%), Positives = 149/238 (62%), Gaps = 3/238 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +++R I +   ++K+AEGSCL++ G+TH+L TA++E+K P  +     GW+TA
Sbjct: 3   RIDGRKNDELRPIEIIPNINKFAEGSCLIRCGNTHVLCTASVEDKPPRHV-PEGEGWVTA 61

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+   R +R+    +  GRS EIQR+IGR+LRSVVD   LG   I IDCDV+Q 
Sbjct: 62  EYSMLPRANRERSRRDISKLKLNGRSAEIQRLIGRSLRSVVDRKKLGPWNITIDCDVLQG 121

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITG +VA+    Q M +          + G+VAA+S G++   P++DL Y E
Sbjct: 122 DGGTRTASITGGFVAMMLAFQKMMEKGQL--SEYPISGYVAAVSAGVVNDVPMLDLCYEE 179

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS+  VD N VM D G ++E+QG+ E   F+ +    ++ L    I +L   QK  + 
Sbjct: 180 DSSAMVDLNCVMDDQGRLIEIQGTGEGRPFTLEEQQKLVELCAKGIQELQAAQKKALG 237


>gi|254673252|emb|CBA08277.1| ribonuclease PH [Neisseria meningitidis alpha275]
          Length = 261

 Score =  309 bits (793), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 113/227 (49%), Positives = 160/227 (70%), Gaps = 2/227 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  + +R+I +T     + +GSCL++ G+T ++ TA+++E VP ++R    GW+TAEYGM
Sbjct: 9   RAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENVPPFLRGKNQGWVTAEYGM 68

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST +R++REA +G+Q GR+QEIQR+IGR+LR+VVD+  LG RQI+IDCDVIQADGGT
Sbjct: 69  LPASTASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGGT 128

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTA+ITGA+VAL   +  +   S+       ++  VAA+S G++ G P++DLDY EDS  
Sbjct: 129 RTASITGAFVALQIAVGKL--VSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDSGC 186

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           D D N VMT SG I+E+QG+AE A FS D    ++ LA+  I +L  
Sbjct: 187 DSDVNIVMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELAA 233


>gi|313895897|ref|ZP_07829451.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975322|gb|EFR40783.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 248

 Score =  309 bits (792), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 106/242 (43%), Positives = 154/242 (63%), Gaps = 5/242 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R+ +Q+R + + R   +Y  GS L++ G T ++ +A++EE+VP +++ +  GW+TA
Sbjct: 3   RRDLRRHDQLRPVRIERGYQRYPAGSALIEMGHTRVVCSASVEERVPFFLKGSGTGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +   R  REA+ GRQ GR+QEIQR+IGRALR+VVD  ALG R I IDCDV+QA
Sbjct: 63  EYAMLPGAGTERTAREAMRGRQTGRTQEIQRLIGRALRAVVDTRALGERTIHIDCDVVQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYG 180
           DGGTRTA+ITGA+VAL +           F     ++ + AA+S G+     P++D+ Y 
Sbjct: 123 DGGTRTASITGAFVALVEACATFYTKRGVF----PVRDYTAAVSVGIGAENTPLLDICYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED+   VD N VMT +G  +EVQG+ E   FS+    A+L+L +  I +LI +QK  +  
Sbjct: 179 EDAQAMVDMNLVMTGAGSFIEVQGTGEGRAFSRAEMNALLDLGERGIRELIDVQKRALGE 238

Query: 241 EV 242
            +
Sbjct: 239 TL 240


>gi|281356100|ref|ZP_06242593.1| ribonuclease PH [Victivallis vadensis ATCC BAA-548]
 gi|281317469|gb|EFB01490.1| ribonuclease PH [Victivallis vadensis ATCC BAA-548]
          Length = 247

 Score =  309 bits (792), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 103/243 (42%), Positives = 150/243 (61%), Gaps = 4/243 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GWI 59
           R+ GR  +++R+I +T     +   S L++ G T ++   +++ KVP W++N K   GWI
Sbjct: 3   RIDGRAPDELRKIVITPDYLSHPLASVLIRNGGTRVVCAVSIDAKVPAWMKNRKVPGGWI 62

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           T EYGMLP ST +R+KRE+ +G+QGGR+ EIQR+IGR+LR   DL  LG     +DCDVI
Sbjct: 63  TCEYGMLPASTHDRMKRESSAGKQGGRTVEIQRLIGRSLRMSADLLKLGENTAYLDCDVI 122

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
            ADGGTR A ITGA  AL    +     +         K  VAAIS G++ G P++DL Y
Sbjct: 123 DADGGTRCAGITGAATALAIACR--RGVAKGIFPENPFKESVAAISVGVIGGVPMLDLCY 180

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            EDS  +VD N VMT+SG +VEVQG+AE   FS+     +++LA+  +  +  +Q++ + 
Sbjct: 181 EEDSNAEVDMNVVMTESGKLVEVQGTAEGEPFSRARLNELIDLAEHGLKQVFAMQREAVE 240

Query: 240 NEV 242
             +
Sbjct: 241 TAL 243


>gi|118619118|ref|YP_907450.1| ribonuclease PH [Mycobacterium ulcerans Agy99]
 gi|166228296|sp|A0PUG0|RNPH_MYCUA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|118571228|gb|ABL05979.1| ribonuclease RphA [Mycobacterium ulcerans Agy99]
          Length = 259

 Score =  309 bits (792), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 107/238 (44%), Positives = 156/238 (65%), Gaps = 1/238 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+++++R + +TR  ++   GS L++FG T ++ TA++ E V  W + +  GW+TA
Sbjct: 4   REDGRRDDELRPVVITRGFTENPAGSVLIEFGRTKVMCTASVTEGVSRWRKGSGLGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V GR GGR+QEI R++GR+LR+ +DL+ALG   I +DCDV+QA
Sbjct: 64  EYAMLPSATHTRSDRESVKGRVGGRTQEISRLVGRSLRACIDLAALGENTIAVDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVNYL-AAAGKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYEE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G +VEVQG+ E ATF +     +L++A      L   Q D ++
Sbjct: 183 DSRAEVDMNVVATDTGTLVEVQGTGEGATFPRSTLDKLLDMALGACDTLFAAQCDALA 240


>gi|197123834|ref|YP_002135785.1| ribonuclease PH [Anaeromyxobacter sp. K]
 gi|220918599|ref|YP_002493903.1| ribonuclease PH [Anaeromyxobacter dehalogenans 2CP-1]
 gi|226736882|sp|B4UBI2|RNPH_ANASK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|254808575|sp|B8J5H5|RNPH_ANAD2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|196173683|gb|ACG74656.1| ribonuclease PH [Anaeromyxobacter sp. K]
 gi|219956453|gb|ACL66837.1| ribonuclease PH [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 239

 Score =  308 bits (791), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 126/241 (52%), Positives = 166/241 (68%), Gaps = 2/241 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR E  +R I L  RVSK+AEGSCLV+FGDTH+L TA+++EKVP  +  T  GW+T
Sbjct: 1   MRKNGRGELDLRPILLEPRVSKHAEGSCLVRFGDTHVLCTASVDEKVPPHVYGTGAGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R++REA  G+Q GR+ EIQR++GRALR+ VDL A+G R + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHERMQREAARGKQTGRTLEIQRLVGRALRAAVDLRAIGPRTVTLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL   ++ ++      Q    +K  VAA+S G++ G   +DLDY 
Sbjct: 121 ADGGTRTAAITGAYVALVQAVRGIQKRRQLAQ--DPVKRSVAAVSVGIVAGQVHLDLDYD 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDST +VD N V T  G +VEVQG+AE   F +     ML+ A   ++ L +LQ+  +  
Sbjct: 179 EDSTAEVDMNVVATGDGALVEVQGTAEGKPFPRAELDRMLDAALAGLSRLKELQEAALRT 238

Query: 241 E 241
            
Sbjct: 239 P 239


>gi|87308273|ref|ZP_01090414.1| ribonuclease PH [Blastopirellula marina DSM 3645]
 gi|87288830|gb|EAQ80723.1| ribonuclease PH [Blastopirellula marina DSM 3645]
          Length = 237

 Score =  308 bits (791), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 108/240 (45%), Positives = 148/240 (61%), Gaps = 8/240 (3%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ NQ+RE+ + RR +K A GS L++ G T +L TA++E  VP W++ +  GWITA
Sbjct: 3   RHDGRKANQLRELKIKRRFTKNAAGSVLIQTGATTVLCTASVESSVPPWLKGSGKGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R  R     +  GR+ EIQR+IGR+LR+V DL ALG + I +DCDV+ A
Sbjct: 63  EYNMLPGSTPTRKSR-----KVDGRTTEIQRLIGRSLRAVADLEALGEQMITVDCDVLDA 117

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA++AL D    ++           L   VAA+S G++ G   +DLDY E
Sbjct: 118 DGGTRTASITGAFIALVDA---LQTIVLPDPKKFPLVDSVAAVSVGLVNGAGALDLDYIE 174

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D    VD N VMT SG  VEVQG+ E ATF+++    ++ L K  +  L + Q   +  +
Sbjct: 175 DVDAAVDMNVVMTGSGKFVEVQGAGEEATFTEEELMKLIQLGKHGVKVLTEAQAKALGKK 234


>gi|258651924|ref|YP_003201080.1| ribonuclease PH [Nakamurella multipartita DSM 44233]
 gi|258555149|gb|ACV78091.1| ribonuclease PH [Nakamurella multipartita DSM 44233]
          Length = 246

 Score =  308 bits (790), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 109/240 (45%), Positives = 156/240 (65%), Gaps = 1/240 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R ++ TR   ++  GS LV+FG T +L  A++   VP W + +  GW+TA
Sbjct: 3   RADGRADHELRPVTFTRGFQQHPAGSVLVEFGGTKVLCAASVTTGVPRWRKGSGLGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE+V GR GGR+ EI R+IGR+LR+ +DL +LG   I +DCDV+QA
Sbjct: 63  EYAMLPSATHERSDRESVKGRVGGRTHEISRLIGRSLRACLDLRSLGENTIAVDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++ +        Q L   +AA+S G++ G   +DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADAVAYLRERGQLAD-PQPLSCQIAAVSVGVVGGRVRLDLPYEE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D+  +VD N V TD G +VEVQG+AE AT+S+    AML+ A   IA L ++Q+  ++  
Sbjct: 182 DARAEVDMNVVATDVGTLVEVQGTAEGATYSRSTLDAMLDSALAGIATLTEMQRAALAGP 241


>gi|254409968|ref|ZP_05023748.1| ribonuclease PH [Microcoleus chthonoplastes PCC 7420]
 gi|196183004|gb|EDX77988.1| ribonuclease PH [Microcoleus chthonoplastes PCC 7420]
          Length = 238

 Score =  307 bits (788), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 102/238 (42%), Positives = 147/238 (61%), Gaps = 4/238 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   RQ NQ+R IS  R  +K+A  S L K GDT +L   T++  +P ++  T  GW+TA
Sbjct: 5   RPDHRQPNQLRPISFVRGFTKFAPASVLTKCGDTQVLCNVTIQPGIPRFLEGTGSGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE +  +  GR+QEIQR+IGR+LR+ VDL+ALG R + +D DV+QA
Sbjct: 65  EYRMLPGATPQRQTRELL--KLSGRTQEIQRLIGRSLRAAVDLTALGERTVFVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTA+ITG +VAL + L  +            ++  +AA+S G+L G P +DL Y E
Sbjct: 123 DAGTRTASITGGYVALAEALDKLVQAGEL--ERSPIRHQIAAVSVGLLAGEPFLDLKYEE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D     D N VM D  +I+E+QG+AE  +FS+     +++LA+  I +L+  Q+  +S
Sbjct: 181 DVAAQTDFNIVMNDELNIIEIQGTAEAESFSRTQLNQLIDLAETGIQELLDAQRHALS 238


>gi|113475741|ref|YP_721802.1| ribonuclease PH [Trichodesmium erythraeum IMS101]
 gi|110166789|gb|ABG51329.1| RNAse PH [Trichodesmium erythraeum IMS101]
          Length = 238

 Score =  307 bits (788), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 102/238 (42%), Positives = 149/238 (62%), Gaps = 4/238 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ NQ+R IS     +K+A  S L KFG+T +L   T++  VP ++ +T  GW+TA
Sbjct: 5   RPDGRKSNQLRPISFELDYTKFATSSVLTKFGETKVLCNVTIQPGVPKFLADTGQGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE +  +  GR+QEIQR+IGR+LR+ +D++ LG R II+D DV+QA
Sbjct: 65  EYRMLPAATSERQQREFM--KLSGRTQEIQRLIGRSLRAALDMNLLGERTIIVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRT +ITG +VA+ + +  + D          +   VAA+S G+L   P +DL+Y E
Sbjct: 123 DAGTRTVSITGGFVAVANAISKLIDQGKL--ERSPILHQVAAVSVGLLEKEPYLDLNYPE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   ++D N VM D   ++EVQG+AE  +FS+     +L+LA+  I  L   Q+ VIS
Sbjct: 181 DVAAEIDFNVVMNDQPALIEVQGTAEIGSFSRTQLNQILDLAEAGIKKLFDAQRQVIS 238


>gi|269218709|ref|ZP_06162563.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269211820|gb|EEZ78160.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 245

 Score =  307 bits (787), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 109/231 (47%), Positives = 147/231 (63%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           MR +S++R      EGS LV FG T +L  A+  E VP W ++T  GW+TAEY MLPR+T
Sbjct: 1   MRPVSISRGWLDAGEGSVLVSFGKTTVLCVASFTEGVPRWRKDTGLGWVTAEYSMLPRAT 60

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
             R  RE+V G+ GGR+ EI R+IGRALR+ VD+ ALG   I +DCDV++ADGGTRTA+I
Sbjct: 61  DERSARESVKGKIGGRTHEISRLIGRALRACVDMRALGENTIQLDCDVLRADGGTRTASI 120

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
           TGA+ AL D +              VL   V+A+S G++ G P++DL Y EDS  D D N
Sbjct: 121 TGAFAALADAVDWAVGEGIVKPRRPVLSDTVSAVSVGVVDGRPVLDLPYEEDSRADTDMN 180

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
            V T +G  +E+QG+AERA FS+     +L+LA    A L  +QK+ ++ E
Sbjct: 181 VVATGAGQFIEIQGTAERAPFSRGELGELLDLAAIGTAHLAAVQKEALTGE 231


>gi|324997302|ref|ZP_08118414.1| ribonuclease PH [Pseudonocardia sp. P1]
          Length = 245

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 107/225 (47%), Positives = 150/225 (66%), Gaps = 1/225 (0%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
           +++TR   K+  GS LV+FGDT +L  A++ E VP W + +  GW+TAEY MLP ST  R
Sbjct: 1   MTITRGFQKHPAGSVLVEFGDTKVLCAASVTEGVPRWRKGSGLGWVTAEYAMLPSSTDTR 60

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
             RE+V G+ GGR+ EI R+IGR+LR+ +DL ALG   I IDCDV+QADGGTRTAAITGA
Sbjct: 61  SSRESVKGKIGGRTHEISRLIGRSLRACIDLRALGENTIAIDCDVLQADGGTRTAAITGA 120

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
           +VAL D +  + +   K    + +   VAA+S G++ G   +DL Y EDS  +VD N V 
Sbjct: 121 YVALCDAVTWLGEHG-KLTDPKPISCQVAAVSVGVVDGRVRLDLPYEEDSRAEVDTNVVA 179

Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           T++G ++EVQG+ E ATF++    AML+ A   IA + ++Q + +
Sbjct: 180 TETGTLIEVQGTGEGATFARKTLDAMLDSALAGIAGIARMQIEAL 224


>gi|326387915|ref|ZP_08209521.1| ribonuclease PH [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207961|gb|EGD58772.1| ribonuclease PH [Novosphingobium nitrogenifigens DSM 19370]
          Length = 238

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 119/237 (50%), Positives = 160/237 (67%), Gaps = 2/237 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR  ++MR I++    +K+AEGS L+ FGDT ++ TA++EE+VP ++R    GW+T
Sbjct: 1   MRASGRAADEMRAITIETHFTKHAEGSVLIGFGDTKVIVTASVEERVPPFLRGKGEGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+V DL  LG RQI +DCDVIQ
Sbjct: 61  AEYSMLPRATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVTDLKKLGERQITLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+GAW+AL   +  +            L   VAAISCG++ G P++DLDY 
Sbjct: 121 ADGGTRTASISGAWIALRLAVDKLMASGQI--KEDPLPRKVAAISCGIVDGTPVLDLDYT 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDST D DANFV+ + G I EVQ +AE AT+ ++    +L LA+    ++   Q   
Sbjct: 179 EDSTADADANFVLIEGGQIAEVQATAEGATYDEEALLRLLRLARIGCGEIFAAQDRA 235


>gi|332669877|ref|YP_004452885.1| ribonuclease PH [Cellulomonas fimi ATCC 484]
 gi|332338915|gb|AEE45498.1| ribonuclease PH [Cellulomonas fimi ATCC 484]
          Length = 262

 Score =  306 bits (784), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 119/235 (50%), Positives = 161/235 (68%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R ++LTRR     EGS LV+FG T +L  A+L E VP W + +  GW+T
Sbjct: 8   LRADGRRPDELRPVTLTRRFLDAGEGSVLVEFGGTKVLCVASLTEGVPRWRKGSGEGWVT 67

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V GR GGR+QEI R+IGR+LR+VVD+SALG   I++DCDV+Q
Sbjct: 68  AEYAMLPRATSTRSDRESVKGRVGGRTQEISRLIGRSLRAVVDVSALGENTIVLDCDVLQ 127

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D +   +         QVL+  VAA+S G++ G P++DL Y 
Sbjct: 128 ADGGTRTAAITGAYVALADAVAWAQQRRLVPAGRQVLRDSVAAVSVGIVDGVPVLDLPYV 187

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           ED   + D N V+T SG  VEVQG+AE A F +    ++L+LA    A+L +LQ+
Sbjct: 188 EDVRAETDMNVVVTGSGTFVEVQGTAEHAPFDRRELDSLLDLALAGTAELTRLQR 242


>gi|325110867|ref|YP_004271935.1| RNAse PH [Planctomyces brasiliensis DSM 5305]
 gi|324971135|gb|ADY61913.1| RNAse PH [Planctomyces brasiliensis DSM 5305]
          Length = 245

 Score =  306 bits (784), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 114/243 (46%), Positives = 156/243 (64%), Gaps = 4/243 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK--HGW 58
           MR  GRQ  Q+R I + R  +  A GS  +K G T LL TA+++  VP W ++ +   GW
Sbjct: 1   MRNDGRQAEQLRPIRVQRHFTGSAPGSVYIKAGRTTLLCTASVDLDVPPWKKHEENPSGW 60

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +TAEY MLP ST  R +RE    +  GRS EIQR+IGR+LR+VVD +ALG R I IDCDV
Sbjct: 61  VTAEYNMLPGSTSPRKRRE--RTKVDGRSSEIQRLIGRSLRAVVDFAALGPRTITIDCDV 118

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ++ADGGTRT  ITG ++AL D L  ++         ++L   VAAIS G++   P++DLD
Sbjct: 119 LEADGGTRTLGITGGFIALVDALIWLQKQEPTCDPKKILTDTVAAISVGIVRQTPMLDLD 178

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           Y EDST +VD N VMT SG  VE+QG+AE+ +FS+      L LA+  I +L ++Q+D  
Sbjct: 179 YSEDSTAEVDLNVVMTGSGEFVEIQGTAEQKSFSRTQLDQQLGLAEKAIVELTRIQRDAF 238

Query: 239 SNE 241
            ++
Sbjct: 239 GDQ 241


>gi|294787659|ref|ZP_06752903.1| tRNA nucleotidyltransferase [Simonsiella muelleri ATCC 29453]
 gi|294483952|gb|EFG31635.1| tRNA nucleotidyltransferase [Simonsiella muelleri ATCC 29453]
          Length = 245

 Score =  306 bits (784), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 114/235 (48%), Positives = 160/235 (68%), Gaps = 2/235 (0%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  N++REI++      +A+GS L+  G+T ++ TAT+++ VP ++R    GW+TAEYGM
Sbjct: 12  RAANELREITIQPNFLPHADGSVLISCGNTKVICTATIDQNVPSFLRGKGEGWVTAEYGM 71

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST +R+KREA SG+Q GR+QEIQR+IGR+LR+ VD+  LG RQI+IDCDVIQADGGT
Sbjct: 72  LPASTQSRMKREAASGKQSGRTQEIQRLIGRSLRACVDMKKLGERQILIDCDVIQADGGT 131

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RT +ITGA+VAL   +Q M   ++       L G VAA+S G++ G P++DLDY EDS  
Sbjct: 132 RTTSITGAFVALKMAIQKM--LNDGRLPETPLIGSVAAVSVGVVGGVPLLDLDYPEDSNC 189

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D D N VM ++  I+E+QG+AE A FS      ++ L +  I  L +LQ+  +  
Sbjct: 190 DSDVNLVMLNADKIIEIQGTAEGAAFSLAELQTLIALGQKGITQLAQLQQKALRT 244


>gi|186682825|ref|YP_001866021.1| ribonuclease PH [Nostoc punctiforme PCC 73102]
 gi|226736921|sp|B2J9Q1|RNPH_NOSP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|186465277|gb|ACC81078.1| ribonuclease PH [Nostoc punctiforme PCC 73102]
          Length = 247

 Score =  306 bits (784), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 100/239 (41%), Positives = 146/239 (61%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   ++R IS     +++A GS L + GDT +L T ++ + VP ++  T  GW+TA
Sbjct: 5   RPDGRLPYELRPISFYPSFTRFAPGSVLARCGDTQVLCTVSVNKGVPKFLEGTGKGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE +  +  GR+QEIQR+IGR+LR+ VD  ALG R + +D DV+QA
Sbjct: 65  EYRMLPSATQKRQERELL--KLSGRTQEIQRLIGRSLRAAVDFEALGERTLTVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRT AITG++VAL   +  +            L G VAA+S G+L   P +DL+Y E
Sbjct: 123 DAGTRTTAITGSFVALAHAISKL--LQEGVLERSPLCGQVAAVSVGLLEAEPFLDLNYIE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D    VD N VM     I+EVQG+AE  +FS+     +L++A+  I +L+  Q++ I++
Sbjct: 181 DVAATVDFNVVMDQHLGIIEVQGTAEEGSFSRTQLDQLLDVAQKGIQELLIAQREAIAD 239


>gi|153006268|ref|YP_001380593.1| ribonuclease PH [Anaeromyxobacter sp. Fw109-5]
 gi|166228263|sp|A7HFW3|RNPH_ANADF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|152029841|gb|ABS27609.1| ribonuclease PH [Anaeromyxobacter sp. Fw109-5]
          Length = 238

 Score =  305 bits (783), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 126/240 (52%), Positives = 162/240 (67%), Gaps = 2/240 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR +GR    +R + L   VSK+AEGSCL +FGDTH+L TA+++EKVP  +  T  GW+T
Sbjct: 1   MRTNGRGPRDLRNVVLEPGVSKHAEGSCLARFGDTHVLCTASVDEKVPPHVYGTGAGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R+ REA  G+QGGR+ EIQR+IGRALR+ VDL ALG+R + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHERMAREAARGKQGGRTLEIQRLIGRALRAAVDLRALGTRTVTLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG +VAL   L+ ++    K      L   VAA+S G++ G   VDLDYG
Sbjct: 121 ADGGTRTAAITGGYVALALALRGLQQ--RKTLSRNPLARSVAAVSVGLVEGEVCVDLDYG 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDST +VD N V T  G +VEVQG+AE   F +     M++ A + I  L + Q+  +  
Sbjct: 179 EDSTAEVDMNVVATGDGALVEVQGTAEGKPFPRSDLDRMVDAALEAIGRLKERQEQALRG 238


>gi|299139261|ref|ZP_07032437.1| ribonuclease PH [Acidobacterium sp. MP5ACTX8]
 gi|298598941|gb|EFI55103.1| ribonuclease PH [Acidobacterium sp. MP5ACTX8]
          Length = 248

 Score =  305 bits (782), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 116/239 (48%), Positives = 154/239 (64%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R  GR  +Q R + LT      AEGS L++ G T +L  AT+E  VP W+RN+  GW+T
Sbjct: 10  FRSGGRAASQARALRLTPGFVATAEGSVLIEVGHTRVLCNATVENGVPGWMRNSGRGWVT 69

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R  RE+  G+ GGR+ EIQR+IGR+LRSVVD+  LG R II+DCDV+Q
Sbjct: 70  AEYGMLPRATLTRTARESERGKIGGRTHEIQRLIGRSLRSVVDMRLLGERTIILDCDVLQ 129

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA  AL   L  +    +       LK  VAA S G++ G  ++DL Y 
Sbjct: 130 ADGGTRTAAITGACTALALALGKLVQAGSL--KESPLKQMVAATSVGIVDGRVLLDLAYE 187

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  +VD N VMT  G +VE Q +AER T+++     ML++A   I +L+K Q++ ++
Sbjct: 188 EDSRAEVDMNVVMTADGGLVETQATAERGTYTRAQLNEMLDVAAVGIEELLKAQRECLA 246


>gi|209523065|ref|ZP_03271622.1| ribonuclease PH [Arthrospira maxima CS-328]
 gi|209496652|gb|EDZ96950.1| ribonuclease PH [Arthrospira maxima CS-328]
          Length = 242

 Score =  305 bits (782), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 97/238 (40%), Positives = 146/238 (61%), Gaps = 4/238 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ +Q+R +      +++A  S L K G+T +L T T++  VP ++++T  GW+TA
Sbjct: 6   RPDGRQPHQLRPVQFELDYTQFAAASVLAKSGNTQVLCTVTIQPGVPRFLQDTGKGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE +  +  GR+QEIQR+IGR+LR+ VDL A+G   + +D DV+QA
Sbjct: 66  EYRMLPGATPQRQPRELM--KLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRT +ITG +VAL      M            +   +AAIS GM+ G P++DL+Y E
Sbjct: 124 DAGTRTTSITGGFVALAHAFNKMVKQGQL--KRSPIIHQIAAISVGMMHGEPLLDLNYQE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   D+D N VM D   I+E+QG+AE  + +++    +L+ A+  I +L +LQ+ V+ 
Sbjct: 182 DVAADIDFNVVMRDDLGIIELQGTAEAESLNRNQLNQILDYAEKGITELCQLQRQVLG 239


>gi|229821215|ref|YP_002882741.1| ribonuclease PH [Beutenbergia cavernae DSM 12333]
 gi|229567128|gb|ACQ80979.1| ribonuclease PH [Beutenbergia cavernae DSM 12333]
          Length = 279

 Score =  305 bits (781), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 105/215 (48%), Positives = 144/215 (66%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  + +R I +TR     AEGS LV+FG+T +L  A+    VP W + +  GW+T
Sbjct: 14  VRADGRAPDDLRPIRITRGWLDAAEGSVLVEFGNTRVLCAASFTAGVPRWRKGSGEGWVT 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+V+D++ALG   I++DCDV+Q
Sbjct: 74  AEYAMLPRATNTRNDRESVRGRIGGRTHEISRLIGRSLRAVIDVAALGENTIVVDCDVLQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D +    +     + + VL+  V+A+S G++ G P++DL Y 
Sbjct: 134 ADGGTRTAAITGAYVALADAVAWGLEHGEVRRGAHVLRDSVSAVSVGIVDGAPLLDLPYA 193

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
           ED   + D N V+T SG  VEVQG+AE A F +  
Sbjct: 194 EDVRAETDMNVVVTGSGSFVEVQGTAEGAPFDRAE 228


>gi|75908883|ref|YP_323179.1| ribonuclease PH [Anabaena variabilis ATCC 29413]
 gi|123609297|sp|Q3M9Q2|RNPH_ANAVT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|75702608|gb|ABA22284.1| RNAse PH [Anabaena variabilis ATCC 29413]
          Length = 247

 Score =  304 bits (780), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 97/239 (40%), Positives = 145/239 (60%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  ++R I+   + +++A GS L   G+T +L T ++ E VP ++  +  GW+TA
Sbjct: 5   RPDGRKPYELRPINFHTKFTRFAPGSVLTICGETKVLCTVSVAESVPKFLAGSGKGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE +  +  GR+QEIQR+IGR+LR+ +D  ALG R + +D DV+QA
Sbjct: 65  EYRMLPSATQQRHERELL--KLSGRTQEIQRLIGRSLRAAIDFEALGERTLTVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTAAITG +VAL + +  +            L G VAA+S G+L     +DL+Y E
Sbjct: 123 DAGTRTAAITGGFVALAEAISQL--LQRGVLERSPLCGQVAAVSVGLLEQEAYLDLNYIE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D    VD N VM  +  I+EVQG+AE  +FS+     +L+ A+  I  L+  Q+  I++
Sbjct: 181 DVAATVDFNVVMNKNLGIIEVQGTAEEGSFSRTQLNQLLDCAETGIQQLLIAQQKAITD 239


>gi|260886704|ref|ZP_05897967.1| tRNA nucleotidyltransferase [Selenomonas sputigena ATCC 35185]
 gi|330839468|ref|YP_004414048.1| ribonuclease PH [Selenomonas sputigena ATCC 35185]
 gi|260863556|gb|EEX78056.1| tRNA nucleotidyltransferase [Selenomonas sputigena ATCC 35185]
 gi|329747232|gb|AEC00589.1| ribonuclease PH [Selenomonas sputigena ATCC 35185]
          Length = 248

 Score =  304 bits (780), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 115/242 (47%), Positives = 155/242 (64%), Gaps = 5/242 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  + +R + + R   K   GS L++ G T ++  A++E++VP ++R T  GWI A
Sbjct: 3   RIRGRAADALRPLKMMRGFQKGPAGSVLIEMGRTRVICAASVEDRVPYFLRGTGTGWIKA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP +T  R  REA  GRQ GR+QEIQR+IGR+LRSVVDL+ALG R I +DCDVI+A
Sbjct: 63  EYALLPSATSTRTPREACQGRQSGRTQEIQRLIGRSLRSVVDLAALGERTIALDCDVIEA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYG 180
           DGGTRTAAITGA+VAL +      +    F     +K  +AA+S G+   G PI+DL Y 
Sbjct: 123 DGGTRTAAITGAFVALVEACASFYEKGKTF----PVKDFLAAVSVGLAQDGEPILDLCYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDST  VD N VMT +   VEVQG+ E   FS+     +L LA+  + +LI  QKD +  
Sbjct: 179 EDSTALVDMNVVMTGAYDFVEVQGTGEGRPFSRREMADLLALAEKGVDELIARQKDALGG 238

Query: 241 EV 242
           E+
Sbjct: 239 EL 240


>gi|148260661|ref|YP_001234788.1| ribonuclease PH [Acidiphilium cryptum JF-5]
 gi|146402342|gb|ABQ30869.1| RNAse PH [Acidiphilium cryptum JF-5]
          Length = 243

 Score =  304 bits (780), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 116/230 (50%), Positives = 159/230 (69%), Gaps = 2/230 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  + +R++ +    S++AEGS L++ G T +L  A++E +VP ++R    GW+TA
Sbjct: 6   RPSGRMADALRQVEIVTGFSRHAEGSALIRMGGTEVLCAASVEGRVPGFLRGAGQGWVTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVD +ALG   I +DCDV+ A
Sbjct: 66  EYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVVDRTALGEMTITLDCDVLNA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR AAITGAWVAL   ++ +   +     +  L G VAA+SCG+  G P++DLDY E
Sbjct: 126 DGGTRCAAITGAWVALALAIRTLRKAN--VIATDPLIGQVAAVSCGVFGGVPVLDLDYAE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           DS  + DANFV+T +G IVE+Q +AERATF +  F  +L LA+   A+L 
Sbjct: 184 DSNAEADANFVLTGTGGIVEIQATAERATFEEATFGTLLGLARKGTAELF 233


>gi|218439976|ref|YP_002378305.1| ribonuclease PH [Cyanothece sp. PCC 7424]
 gi|226736901|sp|B7KB81|RNPH_CYAP7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|218172704|gb|ACK71437.1| ribonuclease PH [Cyanothece sp. PCC 7424]
          Length = 242

 Score =  304 bits (779), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 102/239 (42%), Positives = 150/239 (62%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   RQ +Q+R I      S++  GS L   G+T +L TAT++  VP ++ N+  GW+TA
Sbjct: 5   RPDSRQPDQLRPILFETNYSRFRVGSVLAHCGETRVLCTATIQPNVPKFLLNSGKGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE +     GR+QEIQR+IGR+LR+ +D   LG R IIID DV+QA
Sbjct: 65  EYRMLPGATPERQSRELMQ--LSGRTQEIQRLIGRSLRACLDFERLGERTIIIDTDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRT AITG ++AL   ++ + +          LK  VAA+S G++ G P +DL+Y E
Sbjct: 123 DAGTRTTAITGGYIALGLAIKKLLEVGEL--QESPLKLPVAAVSVGLIEGEPFLDLNYAE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D+  +VD N VMT +  ++EVQG+AE  +FS+     +L+LA+  I +L+  Q++ I++
Sbjct: 181 DTAAEVDFNVVMTGNLDLIEVQGTAESGSFSRLQLNQLLDLAQTGIQELLVAQQNAINS 239


>gi|168702929|ref|ZP_02735206.1| RNase PH [Gemmata obscuriglobus UQM 2246]
          Length = 243

 Score =  304 bits (779), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 110/239 (46%), Positives = 152/239 (63%), Gaps = 2/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R + R    +RE+S TR  ++ A GS LVK G T +L T  +E KVP ++     GW+TA
Sbjct: 3   RPNDRSPTALRELSFTRGYTRPAPGSVLVKMGRTTVLCTCCVEPKVPDFLVGKGKGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLP ST  R  R+   G+  GRS EIQR+IGR+LR+VV+L  LG R + IDCDV++A
Sbjct: 63  EYGMLPGSTHTRKPRDKA-GKVDGRSVEIQRLIGRSLRAVVNLDKLGERTLWIDCDVLEA 121

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA+VA  D +  ++       +++VL   VAA+S G++ G   +DL+Y E
Sbjct: 122 DGGTRTASITGAFVAAVDAINSIKSLLT-VPVTEVLTDSVAAVSVGLIEGEERLDLEYVE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   DVD N VMT SG I+EVQGS E ATF++     +++L +  I  +   QK  + +
Sbjct: 181 DRDADVDMNLVMTGSGKIIEVQGSGEEATFTRKQLDRLVDLGEAGIQAITLAQKAALGS 239


>gi|210632429|ref|ZP_03297357.1| hypothetical protein COLSTE_01253 [Collinsella stercoris DSM 13279]
 gi|210159524|gb|EEA90495.1| hypothetical protein COLSTE_01253 [Collinsella stercoris DSM 13279]
          Length = 244

 Score =  304 bits (779), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 119/238 (50%), Positives = 160/238 (67%), Gaps = 4/238 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R  + MR ++LTR V K A GSCLV+FGDT +L  AT+EE VP W + ++ GW+TA
Sbjct: 8   RSFDRAADAMRPVNLTRDVMKNALGSCLVEFGDTKVLCAATIEEGVPGWRKASRQGWVTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R +RE  + +  GRS EI+R+IGR+LR+VV++ ALG   + +DCDVIQA
Sbjct: 68  EYAMLPASTNRRTRRETSNRK--GRSMEIERLIGRSLRTVVNMKALGEHTVTVDCDVIQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGAWVALHD L    +     +L   L G VAA+S G++ G  ++DLDY E
Sbjct: 126 DGGTRTASITGAWVALHDALMAWVEAGKISRL--PLTGQVAAVSMGLVDGCELLDLDYAE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V TD+G I+E+QG+ E+  F +     +L+L +  I  LI LQ +V +
Sbjct: 184 DSHAEVDMNLVATDAGEIIEIQGTGEQTPFDRARLNRLLDLGELGIKQLIDLQNEVTA 241


>gi|163845843|ref|YP_001633887.1| ribonuclease PH [Chloroflexus aurantiacus J-10-fl]
 gi|222523554|ref|YP_002568024.1| ribonuclease PH [Chloroflexus sp. Y-400-fl]
 gi|163667132|gb|ABY33498.1| ribonuclease PH [Chloroflexus aurantiacus J-10-fl]
 gi|222447433|gb|ACM51699.1| ribonuclease PH [Chloroflexus sp. Y-400-fl]
          Length = 250

 Score =  304 bits (779), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 110/230 (47%), Positives = 152/230 (66%), Gaps = 4/230 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR  +Q+R IS+    + YAEGS L+ +G T +L TAT+E+ VP W+R  + GW+T
Sbjct: 2   MRIDGRSPDQLRPISIEIGAAPYAEGSALIAYGKTRVLCTATVEDGVPAWMRGQQSGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE       GR+QEIQR+IGR+LR+ +DL+ALG R I IDCDV+Q
Sbjct: 62  AEYAMLPRATLQRTRRE--RNGPSGRTQEIQRLIGRSLRAAIDLNALGERTITIDCDVLQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAI+G +VAL   + ++         ++     VAA+S GML G  ++DL Y 
Sbjct: 120 ADGGTRTAAISGGYVALALAVDYLVRSG--VLETRPTLTPVAAVSVGMLQGVLLLDLCYE 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           EDS  D+D N VM  +G  +EVQ +AER+  ++D   A+L+LA   I  +
Sbjct: 178 EDSQADLDCNVVMNSAGGYIEVQATAERSAVTRDQLNALLDLAGRGIQQI 227


>gi|262193889|ref|YP_003265098.1| ribonuclease PH [Haliangium ochraceum DSM 14365]
 gi|262077236|gb|ACY13205.1| ribonuclease PH [Haliangium ochraceum DSM 14365]
          Length = 250

 Score =  303 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 110/229 (48%), Positives = 153/229 (66%), Gaps = 5/229 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ NQ+R + +T    +YAEGS L+K G+T +L  A++EE+VP ++     GW+TA
Sbjct: 3   RPDGREANQLRPVEITTGFQQYAEGSALIKSGNTWVLCAASIEERVPPFLAGRGTGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPRST  R  R +     GGR +EIQR+IGR+LR+ V++ ALG R I IDCDV+QA
Sbjct: 63  EYAMLPRSTHTRSGRHS-----GGRGKEIQRLIGRSLRAAVNMEALGERAITIDCDVLQA 117

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+ITG +VAL   +  +        +  VL+  +AAIS G++ G   +DL Y E
Sbjct: 118 DGGTRVASITGGYVALALAVDGLVRAGLVASVESVLREPIAAISVGIIDGEARLDLPYAE 177

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           DST +VD N VMT+SGH+VEVQG+ E+ TFS+    ++L+LA + +  L
Sbjct: 178 DSTAEVDMNVVMTESGHLVEVQGTGEQGTFSRAQLDSLLDLATEGVKRL 226


>gi|269925889|ref|YP_003322512.1| ribonuclease PH [Thermobaculum terrenum ATCC BAA-798]
 gi|269789549|gb|ACZ41690.1| ribonuclease PH [Thermobaculum terrenum ATCC BAA-798]
          Length = 245

 Score =  303 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 106/240 (44%), Positives = 157/240 (65%), Gaps = 5/240 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR+ N++R  S+      +  GS +++ G T +L  A+++E VP ++  T  GW+T
Sbjct: 6   IRVDGRKPNELRPHSIEIYPLAFPPGSAIIQCGVTKVLCAASIQEGVPKFLEGTGQGWLT 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP ST  R  RE+ +GR  GR+QEIQR+IGR+LR+ V L  +G   II+DCDV+Q
Sbjct: 66  AEYSMLPASTQTRTPRESHTGRLQGRTQEIQRLIGRSLRAAVKLDQIGEITIIVDCDVLQ 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +VA    L+ +   + +  +S      VAA+S G++ G P++DL+Y 
Sbjct: 126 ADGGTRTASITGGYVATVLALRKIFPDTYRDLVS-----PVAAVSVGIVNGTPMLDLNYA 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDST D D N V    G  +E+Q +AER +FS++   AML+LA   IA+L++ Q  V+S+
Sbjct: 181 EDSTADTDLNVVKNHLGDYIEIQATAERVSFSREELDAMLSLADKGIAELMESQSKVLSS 240


>gi|209966225|ref|YP_002299140.1| ribonuclease PH [Rhodospirillum centenum SW]
 gi|209959691|gb|ACJ00328.1| ribonuclease PH [Rhodospirillum centenum SW]
          Length = 239

 Score =  303 bits (777), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 127/228 (55%), Positives = 166/228 (72%), Gaps = 2/228 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +QMR +SL   VSK+AEGSCLV+FGDTH+L TA++E++VP ++R    GW+TA
Sbjct: 3   RPSGRSLDQMRPVSLETNVSKHAEGSCLVRFGDTHVLCTASVEDRVPPFLRGQGQGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  GRQ GR+QEIQR+IGR+LR+V D+ A+G   + IDCDV+QA
Sbjct: 63  EYGMLPRATAERTDREAAKGRQTGRTQEIQRLIGRSLRAVTDVKAMGEITVKIDCDVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITG++VAL    +H+      F  +Q L   VAA+SCG+  G P++DLDY E
Sbjct: 123 DGGTRTAAITGSYVALALAFRHLTSIG--FLKAQPLTDSVAAVSCGLYQGAPVLDLDYAE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
           DS+   DANFV+T  G IVE+QG+AE+  F +  F A+L LA+  I +
Sbjct: 181 DSSAQADANFVLTGKGGIVEIQGTAEKTPFQEAEFLALLALARKGIGE 228


>gi|220910436|ref|YP_002485747.1| ribonuclease PH [Cyanothece sp. PCC 7425]
 gi|254808586|sp|B8HPC6|RNPH_CYAP4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|219867047|gb|ACL47386.1| ribonuclease PH [Cyanothece sp. PCC 7425]
          Length = 239

 Score =  303 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 102/239 (42%), Positives = 148/239 (61%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ +Q+R IS  R  +++A GS L + G T +L   T+   VP ++     GW+TA
Sbjct: 5   RPDGRQSHQLRPISFERGFTRFAAGSVLTRCGQTQVLCNVTVRPGVPKFLEGRGQGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE +  +  GR+QEIQR+IGR+LR+ +D   LG R +++D DV+QA
Sbjct: 65  EYRMLPAATPQRQEREML--KLSGRTQEIQRLIGRSLRAALDFDLLGERTLVVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRT AITG++VAL D +  +            ++ +VAA+S G+L G P +DL Y E
Sbjct: 123 DAGTRTTAITGSFVALADAIDQLLQAGEL--QRSPIRNYVAAVSVGLLEGEPFLDLSYQE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D    VD N VMT+S  I+E+QG+AE  +FS+     +L++A+  I +LI  QK V+  
Sbjct: 181 DVAASVDFNVVMTESLQILELQGTAEGESFSRTQLNQILDVAEVGIRELIAAQKSVLGQ 239


>gi|309792378|ref|ZP_07686846.1| ribonuclease PH [Oscillochloris trichoides DG6]
 gi|308225599|gb|EFO79359.1| ribonuclease PH [Oscillochloris trichoides DG6]
          Length = 240

 Score =  303 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 114/238 (47%), Positives = 154/238 (64%), Gaps = 4/238 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR   ++R I +    + YAEGS L+  G+T +L  A+LE +VP W+R  + GW+TA
Sbjct: 7   RQSGRLPTELRSIEILVNAAPYAEGSALISCGNTRVLCAASLEPQVPGWLRGQQRGWVTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LPRST  R +RE       GR+QEIQR+IGR+LR+ VDL ALG   I +DCDV+QA
Sbjct: 67  EYSLLPRSTHTRTRRE--RSGPSGRTQEIQRLIGRSLRAAVDLEALGECMITVDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITG +VAL   L+ +   +     +  ++  VAAIS G++ G  ++DLDY E
Sbjct: 125 DGGTRTAAITGGYVALALALRKLH--AEGLIATNPIRYAVAAISVGVVEGQMLLDLDYAE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS+ D+D N V T SG  VEVQG+AE     +    A+L+LA   IA LI +Q+ V+ 
Sbjct: 183 DSSADLDCNIVQTASGAFVEVQGTAEGMPIDRAQLDALLDLASQGIARLITIQQAVLG 240


>gi|154507583|ref|ZP_02043225.1| hypothetical protein ACTODO_00063 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797217|gb|EDN79637.1| hypothetical protein ACTODO_00063 [Actinomyces odontolyticus ATCC
           17982]
          Length = 235

 Score =  302 bits (775), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 107/227 (47%), Positives = 150/227 (66%)

Query: 16  LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           +TR  S   EGS L++FG+T +L  A+  E VP W R++  GW+T EY MLPR+T  R  
Sbjct: 1   MTRGWSGTGEGSVLIEFGNTRVLCVASFTEGVPRWKRDSGEGWVTGEYSMLPRATEQRSS 60

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE+V G+ GGR+QEI R+IGR+LR +VD+SALG   I++DCDV++ADGGTRTAAITGA+V
Sbjct: 61  RESVKGKVGGRTQEISRLIGRSLRGIVDVSALGENTIVLDCDVLRADGGTRTAAITGAYV 120

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
           AL D +   ++       ++VL   ++AIS G++ G P++DL Y ED   + D N V T 
Sbjct: 121 ALADAVSWAKEQGILKPSAKVLTDSISAISVGVIDGTPMLDLPYVEDVRAETDMNVVQTG 180

Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           SG  +EVQG+AE A F++D    +L+LA    A L + QK  +   +
Sbjct: 181 SGRFIEVQGTAEHAPFNRDELNELLDLATLGNARLAEAQKLALEAPL 227


>gi|254166930|ref|ZP_04873784.1| ribonuclease PH [Aciduliprofundum boonei T469]
 gi|254168500|ref|ZP_04875344.1| ribonuclease PH [Aciduliprofundum boonei T469]
 gi|289596090|ref|YP_003482786.1| ribonuclease PH [Aciduliprofundum boonei T469]
 gi|197622555|gb|EDY35126.1| ribonuclease PH [Aciduliprofundum boonei T469]
 gi|197624540|gb|EDY37101.1| ribonuclease PH [Aciduliprofundum boonei T469]
 gi|289533877|gb|ADD08224.1| ribonuclease PH [Aciduliprofundum boonei T469]
          Length = 234

 Score =  302 bits (774), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 102/239 (42%), Positives = 150/239 (62%), Gaps = 6/239 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R+ +++R + +     K   GS L+K GDT +L +A + E VP W++    GW+T
Sbjct: 1   MR--NRKPDEIRNVEIIPNYQKKPYGSALIKQGDTVVLCSAQVIENVPDWLKEQNSGWLT 58

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP S+  R+ R+   G   GRS+EI+R+IGR LR+ VDL  LG R I IDCDVIQ
Sbjct: 59  AEYSMLPGSSETRIFRD--RGHVNGRSKEIERIIGRCLRAAVDLKKLGPRTIWIDCDVIQ 116

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+IT  +VAL   ++ +       +    +K  VAAIS G++ G P++DL Y 
Sbjct: 117 ADGGTRTASITAGFVALSLAIRRLMKEGKLGE--NPIKYKVAAISAGIVNGEPLLDLAYE 174

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  DVD N  M + G  +E+QG++E+   S+++   +L+LA+  I +L K Q++ ++
Sbjct: 175 EDSQADVDINIAMNEEGKYIEIQGTSEKEPLSRENLNILLDLAEKGIKELFKKQEEALN 233


>gi|302336447|ref|YP_003801654.1| RNAse PH [Olsenella uli DSM 7084]
 gi|301320287|gb|ADK68774.1| RNAse PH [Olsenella uli DSM 7084]
          Length = 267

 Score =  302 bits (774), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 126/236 (53%), Positives = 158/236 (66%), Gaps = 4/236 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +QMR   LTR + K A+GSCL +FGDT ++ TAT+EE VP W + ++ GW++A
Sbjct: 31  RSYGRAADQMRPAKLTRDIMKNADGSCLAEFGDTRVICTATVEEGVPAWRKGSRAGWVSA 90

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R +RE    +  GRS EI+R+IGR+LR+VVDL  LG   +I DCDVIQA
Sbjct: 91  EYAMLPASTSTRSRREYKGRK--GRSMEIERLIGRSLRAVVDLHRLGELTVICDCDVIQA 148

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGAWVALHD L    D     +L   L G VAAIS GM+ G  ++DLDY E
Sbjct: 149 DGGTRTASITGAWVALHDALMASVDAGRLARL--PLTGQVAAISMGMVDGSLLLDLDYPE 206

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           DS   VD N V TD+G IVEVQG+ ER+T  +    A+L+L +  I  L+ LQ  V
Sbjct: 207 DSHAQVDMNLVGTDAGGIVEVQGTGERSTIDRAQLNALLDLGQVGIGRLVALQNQV 262


>gi|86739583|ref|YP_479983.1| ribonuclease PH [Frankia sp. CcI3]
 gi|123765222|sp|Q2JEN8|RNPH_FRASC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|86566445|gb|ABD10254.1| RNAse PH [Frankia sp. CcI3]
          Length = 247

 Score =  302 bits (774), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 104/242 (42%), Positives = 149/242 (61%), Gaps = 7/242 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R++++ R   ++AEGS L+  G T +L  A++   VP W + +  GW+T
Sbjct: 2   IRADGRRPDELRQVTILRGWQEHAEGSALISAGRTRVLCAASVTTGVPRWRKGSGLGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V GR  GR+ EI R+IGR+LR+ +DL ALG   I IDCDV+ 
Sbjct: 62  AEYSMLPRATDTRNDRESVRGRISGRTHEISRLIGRSLRACIDLKALGENTIAIDCDVLL 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D  + +            +   V+A+S G++ G  ++DL Y 
Sbjct: 122 ADGGTRTAAITGAYVALVDAARWLGR-------PDAIITSVSAVSVGVVKGEAMLDLAYS 174

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDST D D N V T +   VEVQG+AE   F +    ++L+LA    A L  +Q + +  
Sbjct: 175 EDSTADTDMNVVCTGADGFVEVQGTAEGTPFDRTMLDSLLDLAVRGCAQLTAIQTEALRG 234

Query: 241 EV 242
            V
Sbjct: 235 PV 236


>gi|56750485|ref|YP_171186.1| ribonuclease PH [Synechococcus elongatus PCC 6301]
 gi|81299882|ref|YP_400090.1| ribonuclease PH [Synechococcus elongatus PCC 7942]
 gi|61215786|sp|Q5N4V3|RNPH_SYNP6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|123557014|sp|Q31PB6|RNPH_SYNE7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|56685444|dbj|BAD78666.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81168763|gb|ABB57103.1| RNAse PH [Synechococcus elongatus PCC 7942]
          Length = 238

 Score =  302 bits (774), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/239 (41%), Positives = 147/239 (61%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +Q+R I+  RR +++  GS L +FG T +L T T++  VP W+     GW+T
Sbjct: 4   IRPDGRRPDQLRAIAFQRRFTQFPAGSVLAQFGQTQVLCTVTIQAGVPRWLTGQGQGWLT 63

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP +T +R  RE +  +  GR+QEIQR+IGR+LR+ +DL  LG R ++ID DV+Q
Sbjct: 64  AEYRMLPGATPDRQSREWL--KLSGRTQEIQRLIGRSLRAAIDLKKLGERTLLIDADVLQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTRT AI G+WVAL D +  +   +        ++  +AA+S  ++ G   +D DY 
Sbjct: 122 ADAGTRTTAINGSWVALQDAIAQL--IAQGELTESPIQRSIAAVSVALIGGEAFLDPDYP 179

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED   DVD N VM D G ++E+QG+AE   FS+     +L+LA+  IA +   Q + + 
Sbjct: 180 EDVQADVDCNVVMGDRGELIEIQGTAEANPFSRTQLNHILDLAEQGIAQIQAAQLEALR 238


>gi|238897732|ref|YP_002923411.1| RNase PH [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|259494122|sp|C4K3X0|RNPH_HAMD5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|229465489|gb|ACQ67263.1| RNase PH [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 241

 Score =  302 bits (773), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 126/243 (51%), Positives = 161/243 (66%), Gaps = 5/243 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR   Q+R ++ TR  +KYAEG+ LV+FG+T +L TAT+EE VP +++    GWIT
Sbjct: 1   MRPSGRTAQQLRPLTFTRHYTKYAEGAVLVEFGETRVLCTATVEEGVPRFLKGQNKGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPRST  R  RE+V G+QGGR+ EIQR+I RALR+ VDL+ LG   I +DCDV+Q
Sbjct: 61  AEYSMLPRSTHQRHARESVKGKQGGRTLEIQRLIARALRAAVDLTKLGEFTIKLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA VAL D LQ M         S  +KG VAA+S G++ G  I DL+Y 
Sbjct: 121 ADGGTRTAAITGACVALQDALQKMRVEGKL--KSNPMKGLVAAVSVGVVGGESICDLEYI 178

Query: 181 EDSTIDVDANFVMTDSG---HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           ED+  + D N VM + G    I+E+QG+AE A FS      +L LA D I  + + QK V
Sbjct: 179 EDAIAETDMNVVMIEEGAGRKIIEIQGTAEGAPFSHQQLLELLALADDGIKTIFQAQKKV 238

Query: 238 ISN 240
           +  
Sbjct: 239 LEK 241


>gi|296137098|ref|YP_003644340.1| ribonuclease PH [Thiomonas intermedia K12]
 gi|294341380|emb|CAZ89797.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Thiomonas
           sp. 3As]
 gi|295797220|gb|ADG32010.1| ribonuclease PH [Thiomonas intermedia K12]
          Length = 243

 Score =  302 bits (773), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 119/235 (50%), Positives = 159/235 (67%), Gaps = 2/235 (0%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
           GR  + +R I++ R  +++AEGS LV FG T +L TA++EE+VP   R +  GW+TAEYG
Sbjct: 10  GRGLSALRAIAIERHFTRHAEGSVLVAFGHTRVLCTASVEERVPPHKRGSGQGWVTAEYG 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           MLPR+T  R +REA  G+Q GR++EIQR+IGR+LR+V D SALG RQI +DCDV+QADGG
Sbjct: 70  MLPRATHTRGEREAKRGKQQGRTEEIQRLIGRSLRAVFDFSALGERQITLDCDVLQADGG 129

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
           TRTAAITGA VA  D  Q +       Q    ++  VAA+S G+L     +DLDY EDS 
Sbjct: 130 TRTAAITGAAVAAWDACQWLMAQGRIPQ--NPMRQLVAAVSVGLLGDDYRLDLDYAEDSQ 187

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            D D N V T  G ++EVQG+AE A FS+     M++LA+  IA+L+ LQ+  + 
Sbjct: 188 CDTDMNVVGTADGALIEVQGTAEGAPFSRQQLDGMIDLAQRGIAELVALQRQALE 242


>gi|158317399|ref|YP_001509907.1| ribonuclease PH [Frankia sp. EAN1pec]
 gi|226736910|sp|A8L766|RNPH_FRASN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|158112804|gb|ABW15001.1| ribonuclease PH [Frankia sp. EAN1pec]
          Length = 260

 Score =  302 bits (773), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 107/234 (45%), Positives = 148/234 (63%), Gaps = 7/234 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR  +Q+R++++ R   ++AEGS L+  G T +L  A++ E VP W + +  GW+T
Sbjct: 2   IRVDGRTTDQLRDVTIERGWQEHAEGSALISAGRTRVLCAASVTEGVPRWRKGSGLGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+ +DL ALG   I IDCDV+ 
Sbjct: 62  AEYSMLPRATHTRNDRESVRGRIGGRTHEISRLIGRSLRAAIDLKALGENTIAIDCDVLL 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL D  + +   +            V A+S G++ G P++DL Y 
Sbjct: 122 ADGGTRTAAITGAYVALADACRWLGRPAAIV-------TSVCAVSVGVVGGVPMLDLAYT 174

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           EDST D D N V T +G  VEVQG+AE   F +     +L+LA      L ++Q
Sbjct: 175 EDSTADTDMNVVRTGAGGFVEVQGTAEGTPFERSTLDELLDLAVAGCTRLTEIQ 228


>gi|254479649|ref|ZP_05092951.1| ribonuclease PH [Carboxydibrachium pacificum DSM 12653]
 gi|214034420|gb|EEB75192.1| ribonuclease PH [Carboxydibrachium pacificum DSM 12653]
          Length = 229

 Score =  301 bits (772), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 107/209 (51%), Positives = 147/209 (70%), Gaps = 2/209 (0%)

Query: 32  FGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQ 91
            G+T ++ TA++E+KVP + + T  GWIT+EYGMLPR+T  R  RE   GR  GR+ EIQ
Sbjct: 1   MGETKVICTASIEDKVPPFQKGTGKGWITSEYGMLPRATEVRNPREVTKGRPSGRTMEIQ 60

Query: 92  RMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF 151
           R+IGR+LR+VVDL ALG R I IDCDVIQADGGTRTA+ITG+++AL D L  + +     
Sbjct: 61  RLIGRSLRAVVDLEALGERTIWIDCDVIQADGGTRTASITGSFIALADALNKLVEKGELQ 120

Query: 152 QLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
           ++   LK  VAA+S G++ G  ++DL + ED+   VD N VMTD G IVE+QG+ E   F
Sbjct: 121 KI--PLKSFVAAVSVGIVEGNKLLDLSFQEDANALVDMNVVMTDKGEIVEIQGTGEGGPF 178

Query: 212 SQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           S+ +F  +L+LA   I  +IK+QK+V+S+
Sbjct: 179 SRQNFEELLDLAAHGIEQIIKIQKEVLSD 207


>gi|298490673|ref|YP_003720850.1| ribonuclease PH ['Nostoc azollae' 0708]
 gi|298232591|gb|ADI63727.1| ribonuclease PH ['Nostoc azollae' 0708]
          Length = 246

 Score =  301 bits (772), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 101/239 (42%), Positives = 146/239 (61%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   ++R +S     +++A GS L K GDT +L T ++ + VP ++  T  GW+TA
Sbjct: 5   RPDGRNSYELRPLSFYSNFTRFASGSVLAKCGDTQVLCTVSVSDSVPKFLNGTGKGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE +  +  GR+QEIQR+IGR+LR+ +D   LG R +IID DV+QA
Sbjct: 65  EYRMLPSATQKRQERELL--KLSGRTQEIQRLIGRSLRAALDFEVLGERTLIIDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRT AITG++VAL   +  M            L   VAA+S G+L G   +DL+Y E
Sbjct: 123 DAGTRTTAITGSFVALAHAISQM--LQQGVLERSPLCRQVAAVSVGLLAGEAFLDLNYIE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D    VD N VM  +  I+EVQG+AE  +F++     +L++A+  I +L+  Q+D I+N
Sbjct: 181 DVAATVDFNVVMNQNLEIIEVQGTAEEGSFNRQQLNKLLDVAEKGIQELLIAQRDAITN 239


>gi|328466632|gb|EGF37767.1| ribonuclease PH [Listeria monocytogenes 1816]
          Length = 228

 Score =  301 bits (772), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 106/226 (46%), Positives = 149/226 (65%), Gaps = 3/226 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GR+ N +R I +T     + EGS L+  G+T ++ +A++E KVP ++R    GWI+
Sbjct: 1   MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWIS 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQ
Sbjct: 61  AEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA++A+   +  +++     +    +K  +AA S G+L  G  ++DL+Y
Sbjct: 121 ADGGTRTASITGAFIAMVMAIAKLDEAVPFAKF--PVKDFLAATSVGVLEEGGTVLDLNY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
            EDS   VD N +MT SG  VE+QG+ E ATFS+     ++ L K 
Sbjct: 179 VEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKK 224


>gi|291005562|ref|ZP_06563535.1| ribonuclease PH [Saccharopolyspora erythraea NRRL 2338]
          Length = 237

 Score =  301 bits (771), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 103/226 (45%), Positives = 147/226 (65%), Gaps = 1/226 (0%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
           + +TR    +  GS LV+FG T +L  A+++E VP W   +  GW+TAEY MLP ST  R
Sbjct: 1   MRITRGYQDWPAGSVLVEFGRTRVLCAASVQEGVPRWRAGSGLGWVTAEYAMLPSSTNTR 60

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
             RE+V GR GGR+ EI R++GR+LR+ +DL+ALG   I +DCDVIQADGGTRTAAITGA
Sbjct: 61  SARESVKGRIGGRTHEISRLVGRSLRACIDLAALGENTIALDCDVIQADGGTRTAAITGA 120

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
           +VAL D +  +   + +    + L   +AA+S G++ G   +DL Y EDS  +VD N V 
Sbjct: 121 YVALADAITWL-SAAGRLTDPKPLSCSIAAVSVGVVDGRVRLDLPYEEDSRAEVDMNVVA 179

Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           TD G +VEVQG+ E ATF++     M++ A    ++L ++Q + ++
Sbjct: 180 TDHGTLVEVQGTGEGATFTRSTMDKMIDFALAGCSELSRIQSEALA 225


>gi|85708632|ref|ZP_01039698.1| RNase PH [Erythrobacter sp. NAP1]
 gi|85690166|gb|EAQ30169.1| RNase PH [Erythrobacter sp. NAP1]
          Length = 227

 Score =  301 bits (771), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 119/229 (51%), Positives = 156/229 (68%), Gaps = 2/229 (0%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           MR I++    +K+AEGSCL+ FGDT +L TA++EE++P W+R    GW+T EY MLPR+T
Sbjct: 1   MRTITIETGYTKHAEGSCLISFGDTKVLCTASVEERIPPWLRGKGEGWVTGEYSMLPRAT 60

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
             R  REA  G+Q GR+QEIQR+IGR+LR+VVDL  LG RQI +DCDVIQADGGTRTA+I
Sbjct: 61  HTRGSREAARGKQSGRTQEIQRLIGRSLRAVVDLQKLGERQITLDCDVIQADGGTRTASI 120

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
           +GAWVAL   +  +   +        + G VAAISCG+  G P++DLDY EDS+ D DAN
Sbjct: 121 SGAWVALRLAVSKL--MAEGAIKEDPITGQVAAISCGIFEGTPVLDLDYDEDSSADADAN 178

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           FV+ D G I EVQ +AE AT+ ++    +L LA      + K Q D + 
Sbjct: 179 FVLIDGGQIAEVQATAEGATYDEEGLLRLLRLANIGCDAIFKAQLDAVK 227


>gi|255522701|ref|ZP_05389938.1| ribonuclease PH [Listeria monocytogenes FSL J1-175]
          Length = 229

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 104/224 (46%), Positives = 151/224 (67%), Gaps = 3/224 (1%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
              + EGS L+  G+T ++ +A++E KVP ++R    GWI+AEY MLPR+T  R  RE+ 
Sbjct: 1   YLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYSMLPRATNTRNIRESS 60

Query: 80  SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD 139
            G+  GR+ EIQR+IGRALR+VVDL ALG R I +DCDVIQADGGTRTA+ITGA++A+  
Sbjct: 61  KGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGGTRTASITGAFIAMVM 120

Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYGEDSTIDVDANFVMTDSGH 198
            +  +++     +    +K  +AA S G+L  G  ++DL+Y EDS   VD N +MT SG 
Sbjct: 121 AIAKLDEAVPFAKF--PVKDFLAATSVGVLEEGGTVLDLNYVEDSAAQVDMNIIMTGSGA 178

Query: 199 IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            VE+QG+ E ATFS+     ++ L K  I++LI++QK+ + ++V
Sbjct: 179 FVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLGDKV 222


>gi|88808003|ref|ZP_01123514.1| Ribonuclease PH [Synechococcus sp. WH 7805]
 gi|88788042|gb|EAR19198.1| Ribonuclease PH [Synechococcus sp. WH 7805]
          Length = 340

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 100/240 (41%), Positives = 151/240 (62%), Gaps = 4/240 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ +++R  ++      +A  S +V+ G T +L +   E+ VP W R+   GW++A
Sbjct: 105 RKDGRQASELRPFAVEWDPMGFALSSVIVRTGRTAVLCSVCHEQGVPRWRRDQGLGWLSA 164

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP ST  R +RE +  +  GR+QEIQR+IGR+LR+ + + ALG   +++DCDVIQA
Sbjct: 165 EYRLLPGSTPERQRREWL--KLSGRTQEIQRLIGRSLRAALSMEALGENTLLVDCDVIQA 222

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTA+ITGAW+ALH     +   S     +  ++  VAA+S G+L G  ++DLDY E
Sbjct: 223 DAGTRTASITGAWLALHHACASL--VSQGLIPANPVRAQVAAVSVGLLQGEALLDLDYSE 280

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  DVD N VM  SG ++E+QG+AE ATFS+     +L+ A+  +  L++ Q + +  +
Sbjct: 281 DSQADVDLNVVMNASGELLELQGTAEGATFSRQQLNLLLDRAEPGLKQLMRAQNEALRTQ 340


>gi|154500957|ref|ZP_02038995.1| hypothetical protein BACCAP_04643 [Bacteroides capillosus ATCC
           29799]
 gi|150269981|gb|EDM97500.1| hypothetical protein BACCAP_04643 [Bacteroides capillosus ATCC
           29799]
          Length = 238

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 104/239 (43%), Positives = 153/239 (64%), Gaps = 3/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R I +   ++K+AEGSCL++ G+TH+L TA++E++VP  +     GW+TA
Sbjct: 3   RIDGRANDQLRPIEIIPGINKFAEGSCLIRCGNTHVLCTASVEDRVPPHV-PEGEGWVTA 61

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+   R KR+    +   RS EIQR++GR+LR+ VD+ ALG R I +DCDV+Q 
Sbjct: 62  EYSMLPRANRERSKRDIAKLKLSARSAEIQRLVGRSLRAAVDMKALGPRTITVDCDVLQG 121

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA++TG +VAL   L  + +       +  LK  VAAIS G++    ++DL Y E
Sbjct: 122 DGGTRTASVTGGFVALSFALHKLVE--EGVLEAMPLKTCVAAISAGIVDDQLLLDLCYEE 179

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS+  VD N VMT  G +VE+QG+ E  +F+ +   A++ L    I D+  +QK V+  
Sbjct: 180 DSSAQVDLNCVMTGEGELVELQGTGEGRSFTLEEQRALVELCAKGIRDVQAVQKAVLGG 238


>gi|170078680|ref|YP_001735318.1| ribonuclease PH [Synechococcus sp. PCC 7002]
 gi|169886349|gb|ACB00063.1| ribonuclease PH [Synechococcus sp. PCC 7002]
          Length = 240

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 98/239 (41%), Positives = 144/239 (60%), Gaps = 6/239 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL  R  +Q+R        +K+A+ S L   GDT +L T ++EE VP ++R++  GW+TA
Sbjct: 5   RLDNRFFDQLRPFKFELDFTKFAQASVLTSCGDTKVLCTVSVEEGVPPFLRDSGQGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY M+P +T  R +RE +  +  GR+QEIQR+IGR+LR+ +DL ALG R I ID DV+QA
Sbjct: 65  EYRMMPGATPERQRREFM--KLSGRTQEIQRLIGRSLRAAIDLKALGERTITIDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRT AITG +V L    + +            +   VAAIS G++ G   +DL+Y E
Sbjct: 123 DGGTRTTAITGGYVGLAIACERLVKAG--ILGKSPIIAPVAAISVGLIAGQAYLDLNYLE 180

Query: 182 DSTIDVDANFVMTD--SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D   DVD N VM      +++EVQG+AE  ++++     +L++A+  I  ++ LQ   I
Sbjct: 181 DVAADVDFNVVMIGGQGLNLIEVQGTAEAGSYNRAQLNQILDVAEKGIQTIMTLQTKAI 239


>gi|108800808|ref|YP_641005.1| ribonuclease PH [Mycobacterium sp. MCS]
 gi|119869948|ref|YP_939900.1| ribonuclease PH [Mycobacterium sp. KMS]
 gi|126436406|ref|YP_001072097.1| ribonuclease PH [Mycobacterium sp. JLS]
 gi|123368907|sp|Q1B585|RNPH_MYCSS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228293|sp|A3Q379|RNPH_MYCSJ RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|166228294|sp|A1UJV2|RNPH_MYCSK RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|108771227|gb|ABG09949.1| RNAse PH [Mycobacterium sp. MCS]
 gi|119696037|gb|ABL93110.1| RNAse PH [Mycobacterium sp. KMS]
 gi|126236206|gb|ABN99606.1| RNAse PH [Mycobacterium sp. JLS]
          Length = 260

 Score =  298 bits (765), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 111/237 (46%), Positives = 159/237 (67%), Gaps = 1/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR ++++R + +TR  + +  GS LV+FG+T ++ TA++ E VP W + T  GW+TA
Sbjct: 4   REDGRLDDELRPVRITRGFTSHPAGSVLVEFGETRVMCTASVTEGVPRWRKGTGQGWLTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T +R  RE+V GR GGR+QEI R+IGR+LR+ +DL+ALG   I IDCDV+QA
Sbjct: 64  EYAMLPAATHDRSDRESVKGRVGGRTQEISRLIGRSLRACIDLNALGENTIAIDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D + ++   + K    + L   +AA+S G++ G   VDL Y E
Sbjct: 124 DGGTRTAAITGAYVALADAVTYL-AAAEKLSDPRPLSCAIAAVSVGVVDGRVRVDLPYSE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS  +VD N V TD+G +VE+QG+ E ATF +     +L+LA      L  +Q++ +
Sbjct: 183 DSRAEVDMNVVATDTGTLVEIQGTGEGATFPRSTLDKLLDLALASCDQLFVVQREAL 239


>gi|257126136|ref|YP_003164250.1| ribonuclease PH [Leptotrichia buccalis C-1013-b]
 gi|257050075|gb|ACV39259.1| ribonuclease PH [Leptotrichia buccalis C-1013-b]
          Length = 231

 Score =  298 bits (764), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 114/233 (48%), Positives = 158/233 (67%), Gaps = 2/233 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R+ ++MRE+ +T+    + EGS L++FG+T ++  AT+EEK+P W+R T  GWIT
Sbjct: 1   MRNNNRKNDEMREVKVTKNYIIHPEGSVLIEFGNTKVICNATVEEKIPRWLRGTGSGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  RV+RE+  G+  GR+ EIQR+IGRALR+ +DL  LG R I+IDCDVIQ
Sbjct: 61  AEYSMLPRATNTRVQRESTKGKLSGRTMEIQRLIGRALRATIDLEKLGERTIMIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA++AL   ++ + D   +      +K  VAAIS G +    ++DL+Y 
Sbjct: 121 ADGGTRTASITGAYLALELAIEKLID--ERKLKEMPIKAKVAAISVGKVRNELLLDLEYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           EDS  DVD N VM D G  +E+QG+ E ATF+Q      + L+K+    L KL
Sbjct: 179 EDSRADVDMNIVMNDKGEFIELQGTGEEATFTQTELLKFIELSKNAFDKLFKL 231


>gi|284989916|ref|YP_003408470.1| ribonuclease PH [Geodermatophilus obscurus DSM 43160]
 gi|284063161|gb|ADB74099.1| ribonuclease PH [Geodermatophilus obscurus DSM 43160]
          Length = 250

 Score =  298 bits (763), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 112/239 (46%), Positives = 152/239 (63%), Gaps = 1/239 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R +++TR    +AEGS LV+FG T +L  A++ E VP W + +  GW+TA
Sbjct: 9   RPDGRAADQLRPVTITRGWLDHAEGSVLVEFGRTRVLCAASVTEGVPRWRKGSGLGWVTA 68

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+ +DL ALG   + IDCDV+QA
Sbjct: 69  EYAMLPRATHTRGDRESVKGRIGGRTHEISRLIGRSLRAAIDLGALGENSVAIDCDVLQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D +  + +   K    + +   VAA+S G++ G P +DL Y E
Sbjct: 129 DGGTRTAAITGAYVALADAVGWLGE-RRKLARPRAVLQSVAAVSVGVVDGQPRLDLAYEE 187

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     D N V T  G  VEVQG+AE   F +    A+L+LA    A+L ++Q D +  
Sbjct: 188 DVRAGTDMNVVCTGDGSFVEVQGTAENGVFDRAALDALLDLAVGGCAELSRIQADALQQ 246


>gi|284053737|ref|ZP_06383947.1| ribonuclease PH [Arthrospira platensis str. Paraca]
          Length = 241

 Score =  298 bits (763), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 94/238 (39%), Positives = 144/238 (60%), Gaps = 4/238 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ +Q+R +      +++A  S L K G+T +L T T++  VP ++++T  GW+TA
Sbjct: 5   RPDGRERDQLRPVQFELDYTQFAAASVLAKSGNTQVLCTVTIQPGVPRFLQDTGKGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE +  +  GR+QEIQR+IGR+LR+ VDL A+G   + +D DV+QA
Sbjct: 65  EYRMLPGATPQRQPRELM--KLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRT +I G +VAL      M            +   +AAIS GM+ G  ++DL+Y E
Sbjct: 123 DAGTRTTSINGGFVALAHAFNKMVKRGEL--KRSPIIHQIAAISVGMMHGEALLDLNYQE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   D+D N VM D   I+E+QG+AE  + +++    +L+ A+  I +L +LQ+ V+ 
Sbjct: 181 DVAADIDFNVVMRDDLGIIELQGTAEAESLNRNQLNQILDYAEKGITELCQLQRQVLG 238


>gi|320096011|ref|ZP_08027624.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319977082|gb|EFW08812.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 255

 Score =  297 bits (762), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 111/239 (46%), Positives = 151/239 (63%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R +S+TR  S   EGS L++FG T +L  A+    VP W R++  GW+TA
Sbjct: 7   RADGRAPDQLRPVSITRGWSGTGEGSVLIEFGATRVLCVASFTTGVPRWKRDSGEGWVTA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+QEI R+IGR+LR VVD  ALG   + +DCDV++A
Sbjct: 67  EYAMLPRATDQRSPRESVKGRVGGRTQEISRLIGRSLRGVVDTRALGENTVTLDCDVLRA 126

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA++TGA++AL D +   +        ++VL   V+AIS G++ G P++DL Y E
Sbjct: 127 DGGTRTASVTGAYIALADAVAWAKRNGAVSPGAKVLTDSVSAISVGIVDGAPVLDLPYAE 186

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     D N V T  G  +EVQG+AE A FS+    A+L+LA    A L   Q+  +S 
Sbjct: 187 DVRAHTDMNVVQTGDGRFIEVQGTAEHAPFSRAELSALLDLAALGNARLADAQRAALSG 245


>gi|312199598|ref|YP_004019659.1| ribonuclease PH [Frankia sp. EuI1c]
 gi|311230934|gb|ADP83789.1| ribonuclease PH [Frankia sp. EuI1c]
          Length = 250

 Score =  297 bits (762), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 111/235 (47%), Positives = 147/235 (62%), Gaps = 7/235 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R++++ R     AEGS L+ FG T +L  A++ E VP W + +  GW+TA
Sbjct: 3   RHDGRAADQLRDVTIVRGWQDQAEGSALINFGRTRVLCAASVTEGVPRWRKGSGLGWVTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+ +DL  LG   I IDCDV+ A
Sbjct: 63  EYSMLPRATNTRNDRESVKGRIGGRTHEISRLIGRSLRACIDLKQLGENTIAIDCDVLLA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITGA+VAL D    +          + + G V+A+S G++ G P++DL Y E
Sbjct: 123 DGGTRTAAITGAYVALADACGWLGR-------PKAISGGVSAVSVGVVGGVPMLDLAYVE 175

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           DS  D D N V TD+G  VEVQG+AE   F +     +L+LA    A L K Q D
Sbjct: 176 DSAADTDMNVVCTDTGSFVEVQGTAEGVVFDRAMLDQLLDLAVAGCAQLAKAQAD 230


>gi|291567427|dbj|BAI89699.1| ribonuclease PH [Arthrospira platensis NIES-39]
          Length = 242

 Score =  297 bits (762), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 94/238 (39%), Positives = 144/238 (60%), Gaps = 4/238 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ +Q+R +      +++A  S L K G+T +L T T++  VP ++++T  GW+TA
Sbjct: 6   RPDGRERDQLRPVQFELDYTQFAAASVLAKSGNTQVLCTVTIQPGVPRFLQDTGKGWLTA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R  RE +  +  GR+QEIQR+IGR+LR+ VDL A+G   + +D DV+QA
Sbjct: 66  EYRMLPGATPQRQPRELM--KLSGRTQEIQRLIGRSLRAAVDLQAMGEITVTVDADVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRT +I G +VAL      M            +   +AAIS GM+ G  ++DL+Y E
Sbjct: 124 DAGTRTTSINGGFVALAHAFNKMVKRGEL--KRSPIIHQIAAISVGMMHGEALLDLNYQE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   D+D N VM D   I+E+QG+AE  + +++    +L+ A+  I +L +LQ+ V+ 
Sbjct: 182 DVAADIDFNVVMRDDLGIIELQGTAEAESLNRNQLNQILDYAEKGITELCQLQRQVLG 239


>gi|296122989|ref|YP_003630767.1| ribonuclease PH [Planctomyces limnophilus DSM 3776]
 gi|296015329|gb|ADG68568.1| ribonuclease PH [Planctomyces limnophilus DSM 3776]
          Length = 239

 Score =  297 bits (762), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 110/243 (45%), Positives = 152/243 (62%), Gaps = 7/243 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN---TKHG 57
           MR  GRQ +++R I + R+ +K A GS L+  GDT LL TA+++E +P W       + G
Sbjct: 1   MRHDGRQPDELRPIRIQRQFTKVAPGSVLISAGDTTLLVTASIDETLPPWKAADPAAQKG 60

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
           W+TAEY MLP ST  R +RE    +  GRS EIQR+IGR+LR+ VD   LG R I+ID +
Sbjct: 61  WLTAEYCMLPGSTSPRKRRE--REKVDGRSTEIQRLIGRSLRACVDFETLGPRTIMIDVE 118

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+QADGGTRT  ITG ++AL D +  + D     +   VL   +AA+S G+  G PI+DL
Sbjct: 119 VLQADGGTRTLGITGGYIALCDAIATLGD--KVSKDRPVLTTSIAAVSVGISHGTPILDL 176

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           DY EDS  +VD N VMT SG  +E+QG+AE  +F++      L LA+  I  L++LQ+  
Sbjct: 177 DYIEDSQAEVDLNVVMTGSGEFIEIQGTAEGRSFTRAQLDQQLALAEKGIRQLMELQQAA 236

Query: 238 ISN 240
           +  
Sbjct: 237 LKG 239


>gi|241190345|ref|YP_002967739.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195751|ref|YP_002969306.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|240248737|gb|ACS45677.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250305|gb|ACS47244.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793332|gb|ADG32867.1| ribonuclease PH [Bifidobacterium animalis subsp. lactis V9]
          Length = 230

 Score =  297 bits (761), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 100/216 (46%), Positives = 138/216 (63%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
           + +TR  +   EGS L++ G+T ++ TAT  + VP W +++  GW+TAEY MLPR+T  R
Sbjct: 1   MRITRAFTDVPEGSVLIECGNTRVMCTATFTDTVPRWRKDSGLGWVTAEYSMLPRATAQR 60

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
             RE+V G+ GGR+ EI R+IGR LR V+D+ ALG   I +DCDV+QADGGTRTA+ITGA
Sbjct: 61  TDRESVRGKVGGRTHEISRLIGRCLRGVIDMKALGENTIQMDCDVLQADGGTRTASITGA 120

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
            VAL D L   +       +  VL   V+A+S G++ G P++DL Y EDS    D N  M
Sbjct: 121 HVALVDALNWAKQNGKIKSVKNVLLDSVSAVSVGVIDGEPMLDLPYVEDSRAMTDMNVAM 180

Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
           T SG  VE+QG+AE   FS++    +L+LA     +
Sbjct: 181 TGSGKFVEIQGTAEHRPFSRNELGVLLDLATKGNRE 216


>gi|300813206|ref|ZP_07093574.1| tRNA nucleotidyltransferase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300512659|gb|EFK39791.1| tRNA nucleotidyltransferase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 238

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 107/237 (45%), Positives = 147/237 (62%), Gaps = 3/237 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   RQ +++REI ++      A+GS L++ G+T ++ TA +EEKVP ++R  + GW++
Sbjct: 1   MRTD-RQNSEIREIKISPDFVPNADGSVLIECGNTKVVCTAIIEEKVPPFLRGKEMGWVS 59

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP ST  R  R+   G+Q GR  EIQR+IGR+LR  VDL ALG R I +DCDVI 
Sbjct: 60  AEYSMLPGSTVIRKVRDISRGKQDGRGTEIQRLIGRSLREAVDLKALGERTIWLDCDVIN 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +I G+++AL   +       NK      +K  V +IS G + G  +VDLDY 
Sbjct: 120 ADGGTRTTSINGSYIALEMAVNK--ALKNKKLEVNPIKCKVGSISVGKVKGIKLVDLDYK 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS  DVD N VM D   I+E+QG++ER TF+ +     L  A+  I D+ K  + V
Sbjct: 178 EDSNADVDLNLVMNDKFEIIEIQGTSERDTFTTEELAEFLKFAQIGIKDIFKYMEIV 234


>gi|115377533|ref|ZP_01464733.1| ribonuclease PH [Stigmatella aurantiaca DW4/3-1]
 gi|115365473|gb|EAU64508.1| ribonuclease PH [Stigmatella aurantiaca DW4/3-1]
          Length = 276

 Score =  296 bits (758), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 114/239 (47%), Positives = 149/239 (62%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R    +R ++LT  VS++AEGS  V+FG T ++ T ++EE+VP  +     GW+T
Sbjct: 40  VRSFQRGVLDLRPVTLTPGVSRHAEGSAQVEFGHTRVIVTCSVEERVPPHLMGKGTGWVT 99

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+ EIQR+IGR++R+ V+LS LG R + +DCDVIQ
Sbjct: 100 AEYGMLPRSTHTRSPREAAKGKQSGRTMEIQRLIGRSMRAAVNLSTLGPRTLTLDCDVIQ 159

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL   L+ +   S            +AA+S G++ G   VDLDY 
Sbjct: 160 ADGGTRTASITGAYVALVMALRSL--NSKGTLSRMPSLTPLAAVSVGVVKGEVRVDLDYE 217

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  DVD N V T  G IVEVQG+AE   F +    AML+     I  L   Q  V+ 
Sbjct: 218 EDSAADVDLNLVATGDGRIVEVQGTAEHQLFDRKALDAMLDGGMAAIQQLTAAQAKVLG 276


>gi|257063633|ref|YP_003143305.1| RNAse PH [Slackia heliotrinireducens DSM 20476]
 gi|256791286|gb|ACV21956.1| RNAse PH [Slackia heliotrinireducens DSM 20476]
          Length = 240

 Score =  296 bits (758), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 114/238 (47%), Positives = 155/238 (65%), Gaps = 5/238 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+  R +  +R ++L R V K A GSCLVKFGDTH+L  AT+EE+VP W +N+  GW+TA
Sbjct: 5   RVDNRADRAIRPVTLERGVMKNATGSCLVKFGDTHVLCAATIEERVPGWRKNSGLGWVTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL-GSRQIIIDCDVIQ 120
           EY MLP ST  R  RE    +  GRSQEI+R+IGR+LR+V D+ A+ G   + +DCDV+Q
Sbjct: 65  EYAMLPASTSKRTPREYKGRK--GRSQEIERLIGRSLRNVCDMGAMGGEVLMTVDCDVLQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVA +D  +              L G VAAIS GM+ G  ++DLDY 
Sbjct: 123 ADGGTRTASITGAWVAAYDAFEMWRKSGK--CKRNPLFGQVAAISVGMVGGRLLLDLDYR 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           EDS  ++D N VM   G  +E+QG+ E+A F +     ML++A+  I +L+ LQ+  +
Sbjct: 181 EDSKAEIDMNVVMNAKGEFIEIQGTGEQAPFGKATLDDMLSMAQSGIEELLALQRAAV 238


>gi|284043327|ref|YP_003393667.1| ribonuclease PH [Conexibacter woesei DSM 14684]
 gi|283947548|gb|ADB50292.1| ribonuclease PH [Conexibacter woesei DSM 14684]
          Length = 245

 Score =  296 bits (758), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 112/229 (48%), Positives = 148/229 (64%), Gaps = 2/229 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR    +R +S      + A GS L+  G+T ++ TA++EE VP W+     GW+TA
Sbjct: 5   RSYGRTAEGLRPVSFEPGFVRSATGSALIAIGETRVICTASVEESVPRWMTGRGTGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLP STG R  R+   GR  GR+ EIQR+IGR+LR VVD SALG R + +DCDV+QA
Sbjct: 65  EYGMLPASTGQRKARDVTKGRADGRTVEIQRLIGRSLRGVVDFSALGERTVYVDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+ITG +VAL    + +   ++       L G VAA+S G++ G P++DLDY E
Sbjct: 125 DGGTRCASITGGFVALQLACERL--VADGLLERLPLTGSVAAVSAGIVDGVPLLDLDYPE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           DST +VDAN VMT  G +VEVQ +AER   S+ H   +L LA+  IA+L
Sbjct: 183 DSTAEVDANVVMTGEGGLVEVQATAERTPLSRAHLDDLLALAERGIAEL 231


>gi|113954193|ref|YP_729551.1| ribonuclease PH [Synechococcus sp. CC9311]
 gi|113881544|gb|ABI46502.1| ribonuclease PH [Synechococcus sp. CC9311]
          Length = 241

 Score =  295 bits (757), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 97/238 (40%), Positives = 146/238 (61%), Gaps = 4/238 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+   +R  S++     +A  S ++  G T +L +   +E VP W ++   GW++A
Sbjct: 6   RNDGRRPGDLRPFSISWDPMGFALSSVIIHSGRTTVLCSVCHQEGVPRWRKDQGKGWLSA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP ST  R  RE +  +  GR+QEIQR+IGR+LR+ +D+ ALG   + IDCDVIQA
Sbjct: 66  EYRLLPGSTPERQNRELL--KLSGRTQEIQRLIGRSLRAAIDMEALGENTLRIDCDVIQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTAAI+G+WVAL    + +         +  ++  VAA+S G++   P++DLDY E
Sbjct: 124 DAGTRTAAISGSWVALQRACERLVQ--QGVLNTNPVQSQVAAVSVGVIHKRPLLDLDYSE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  DVD N VM   GH++E+QG+AE A FS+     +L+LA+  +  ++  Q+  +S
Sbjct: 182 DSQADVDLNVVMNGEGHLLELQGTAEGAPFSRHQLNDLLDLAEPGLKKIMDDQRAALS 239


>gi|219850495|ref|YP_002464928.1| ribonuclease PH [Chloroflexus aggregans DSM 9485]
 gi|219544754|gb|ACL26492.1| ribonuclease PH [Chloroflexus aggregans DSM 9485]
          Length = 250

 Score =  295 bits (757), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 105/230 (45%), Positives = 146/230 (63%), Gaps = 4/230 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q+R I++    + YAEGS L+ +G+T +L TAT+E+ VP W+R  + GW+T
Sbjct: 2   VRRDGRAPDQLRPITIEIGAAPYAEGSALIAYGNTRVLCTATIEDGVPAWMRGQQGGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE       GR+QEIQR+IGRALR+ +DL A+G R I IDCDV+Q
Sbjct: 62  AEYAMLPRATLQRSRRE--RNGPSGRTQEIQRLIGRALRAAIDLHAIGERTITIDCDVLQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I+G +VAL   + H+         +      +AA+S GM+    ++DL Y 
Sbjct: 120 ADGGTRTASISGGYVALALAVDHLVRSGAV--ETYPTLTPLAAVSVGMIQDTLLLDLCYE 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           EDS  D+D N VM  +   VEVQ +AER   S+    A+L+LA   I  +
Sbjct: 178 EDSQADLDCNVVMNINSAFVEVQATAERTPVSRAQLDALLDLAARGIQQI 227


>gi|282882977|ref|ZP_06291581.1| tRNA nucleotidyltransferase [Peptoniphilus lacrimalis 315-B]
 gi|281297184|gb|EFA89676.1| tRNA nucleotidyltransferase [Peptoniphilus lacrimalis 315-B]
          Length = 238

 Score =  295 bits (756), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 107/237 (45%), Positives = 147/237 (62%), Gaps = 3/237 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   RQ +++REI ++      A+GS L++ G+T ++ TA +EEKVP ++R  + GW++
Sbjct: 1   MRTD-RQNSEIREIKISPDFVPNADGSVLIECGNTKVVCTAIIEEKVPPFLRGKEMGWVS 59

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP ST  R  R+   G+Q GR  EIQR+IGR+LR  VDL ALG R I +DCDVI 
Sbjct: 60  AEYSMLPGSTVIRKVRDISRGKQDGRGTEIQRLIGRSLREAVDLKALGERTIWLDCDVIN 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT +I G+++AL   +       NK      +K  V +IS G + G  +VDLDY 
Sbjct: 120 ADGGTRTTSINGSYLALEMAVNK--ALKNKRLEVNPIKCKVGSISVGKVKGIKLVDLDYK 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           EDS  DVD N VM D   I+E+QG++ER TF+ +     L  A+  I D+ K  + V
Sbjct: 178 EDSNADVDLNLVMNDKFEIIEIQGTSERDTFTAEELAEFLKFAQIGIKDIFKYMEIV 234


>gi|61216057|sp|Q8DLA4|RNPH_THEEB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
          Length = 242

 Score =  295 bits (756), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 102/238 (42%), Positives = 147/238 (61%), Gaps = 4/238 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ  ++R     R  +++A GS L + G T +L T + +E VP ++  T  GW+TA
Sbjct: 5   RPDGRQPQELRSHQFQRHFTQFALGSVLAQAGQTQVLCTVSFKEGVPKFLEGTGQGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE +  +  GR+QEIQR+IGR+LRS VDLS LG   +I+D DV+QA
Sbjct: 65  EYRMLPSATRPRQEREFL--KLSGRTQEIQRLIGRSLRSAVDLSLLGECTLIVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTR+ AITG ++AL D L  +            L+  VAA+S G++   P +DL Y E
Sbjct: 123 DAGTRSLAITGGYIALVDALSAL--LQQGVLRKSPLRHQVAAVSVGLIDDEPYLDLSYAE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D    VD N VMT SG  +EVQG+AE  +F +     +L++A+  I +LI++Q+ V++
Sbjct: 181 DVAASVDFNVVMTGSGQFIEVQGTAEMGSFDRGTLDRLLDVARQGIQELIEIQQRVLA 238


>gi|310820087|ref|YP_003952445.1| ribonuclease ph [Stigmatella aurantiaca DW4/3-1]
 gi|309393159|gb|ADO70618.1| Ribonuclease PH [Stigmatella aurantiaca DW4/3-1]
          Length = 237

 Score =  295 bits (755), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 115/239 (48%), Positives = 149/239 (62%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R    +R ++LT  VS++AEGS  V+FG T ++ T ++EE+VP  +     GW+T
Sbjct: 1   MRSFQRGVLDLRPVTLTPGVSRHAEGSAQVEFGHTRVIVTCSVEERVPPHLMGKGTGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPRST  R  REA  G+Q GR+ EIQR+IGR++R+ V+LS LG R + +DCDVIQ
Sbjct: 61  AEYGMLPRSTHTRSPREAAKGKQSGRTMEIQRLIGRSMRAAVNLSTLGPRTLTLDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL   L+ +   S            +AA+S G++ G   VDLDY 
Sbjct: 121 ADGGTRTASITGAYVALVMALRSL--NSKGTLSRMPSLTPLAAVSVGVVKGEVRVDLDYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  DVD N V T  G IVEVQG+AE   F +    AML+     I  L   Q  V+ 
Sbjct: 179 EDSAADVDLNLVATGDGRIVEVQGTAEHQLFDRKALDAMLDGGMAAIQQLTAAQAKVLG 237


>gi|282900962|ref|ZP_06308895.1| Ribonuclease PH [Cylindrospermopsis raciborskii CS-505]
 gi|281194053|gb|EFA69017.1| Ribonuclease PH [Cylindrospermopsis raciborskii CS-505]
          Length = 246

 Score =  295 bits (755), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 95/239 (39%), Positives = 149/239 (62%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ +Q+R ++     +++A GS L + G+T +L T ++ E VP ++  +  GW+TA
Sbjct: 5   RLDGRQPDQLRTLNFYPHFTRFAPGSVLAQCGETQVLCTVSITEGVPKFLMGSGKGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE +  +  GR+QEIQR+IGR+LR+ ++   LG + + +D DV+QA
Sbjct: 65  EYRMLPSATQQRQERELL--KLSGRTQEIQRLIGRSLRAALNFEILGEKTLTVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRT +ITG ++AL   + H+            L G +AA+S G+L G   +DLD+ E
Sbjct: 123 DAGTRTISITGGFIALAHAITHL--LQQGVLERSPLCGQIAAVSVGLLKGEAFLDLDFTE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   +VD N VM    +I+EVQG+AE  +FS+     +L++A+  I +L+  Q+ VI +
Sbjct: 181 DVNAEVDFNVVMNSKLNIIEVQGTAEAGSFSRQQLNQLLDVAETGIRELLIAQRSVIPD 239


>gi|162147173|ref|YP_001601634.1| ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785750|emb|CAP55321.1| putative Ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5]
          Length = 275

 Score =  295 bits (755), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 118/237 (49%), Positives = 157/237 (66%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  + +R IS+    + +AEGS L++ G T +L  AT+E +VP ++R    GW+TA
Sbjct: 31  RPSGRAPDALRAISIEPGFAHHAEGSALIRMGGTEVLCAATVESRVPPFLRGQGKGWVTA 90

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVDL ALG   I +DCDV+ A
Sbjct: 91  EYGMLPRATHTRGGREAAKGKQSGRTQEIQRLIGRSLRAVVDLEALGEMSITVDCDVLNA 150

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+ITGAWVAL   L+ +    N+      L   VAA+SCG+     ++DLDY E
Sbjct: 151 DGGTRCASITGAWVALRLALETLVR--NRVLARLPLTAQVAAVSCGLTGAGAVLDLDYDE 208

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS    DANFV+T++G IVE+Q +AE A F+QD F  +L LA+   A L   Q+  +
Sbjct: 209 DSAAAADANFVLTETGGIVEIQATAEHAPFAQDQFDTLLRLARTGTAQLFIAQRQAV 265


>gi|148656132|ref|YP_001276337.1| ribonuclease PH [Roseiflexus sp. RS-1]
 gi|148568242|gb|ABQ90387.1| RNAse PH [Roseiflexus sp. RS-1]
          Length = 245

 Score =  295 bits (755), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 110/239 (46%), Positives = 152/239 (63%), Gaps = 4/239 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR    +R + +T     YAEGS L++ G+T +L TA++EE VP W+R  + GW+T
Sbjct: 2   VRNDGRAPADLRPVRITIDTYGYAEGSALIEMGNTRVLCTASVEEGVPQWLRGQQRGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            EY +LPRST  R +RE       GR+QEIQR+IGRALR+ V L AL    + +DCDV+Q
Sbjct: 62  GEYALLPRSTAQRTRRE--RNGVSGRTQEIQRLIGRALRAAVSLEALDGFTVTVDCDVLQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +VAL   L  +   +     S  L+  VAA+S G + G  ++DLDY 
Sbjct: 120 ADGGTRTASITGGYVALALALHRL--TAEGRLASNPLQRAVAAVSAGYVAGCALLDLDYS 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  D+D N V+TD G IVEVQ +AE    S+  F A+++LA D I  L+ +Q+  ++
Sbjct: 178 EDSVADMDCNLVLTDDGAIVEVQSTAEARAVSRAEFDALIDLATDGIRRLLAIQRAALA 236


>gi|229815851|ref|ZP_04446175.1| hypothetical protein COLINT_02905 [Collinsella intestinalis DSM
           13280]
 gi|229808546|gb|EEP44324.1| hypothetical protein COLINT_02905 [Collinsella intestinalis DSM
           13280]
          Length = 244

 Score =  295 bits (755), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 121/236 (51%), Positives = 162/236 (68%), Gaps = 4/236 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R +GR  NQMR ++LTR V K+A GSCLV+FGDT +L  AT+EE VP W + +  GW+TA
Sbjct: 8   RANGRAANQMRTVNLTRDVMKHALGSCLVEFGDTKVLCAATIEEGVPGWRKASHQGWVTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP ST  R +RE  + +  GRS EI+R+IGR+LR+VV++ +LG   + +DCDVIQA
Sbjct: 68  EYAMLPASTNRRTRRETNNRK--GRSMEIERLIGRSLRTVVNMKSLGEHTVTVDCDVIQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGAWVALHD L    +     +L   L G VAA+S G++ G  ++DLDY E
Sbjct: 126 DGGTRTASITGAWVALHDALMAWVEAGKIARL--PLTGQVAAVSMGLVDGCELLDLDYSE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           DS  +VD N V TD+G I+E+QG+ E+  F +     +L+L +  I  LI LQ +V
Sbjct: 184 DSHAEVDMNLVATDAGEIIEIQGTGEQTPFDRARLNRLLDLGELGIKQLIDLQNEV 239


>gi|87200077|ref|YP_497334.1| ribonuclease PH [Novosphingobium aromaticivorans DSM 12444]
 gi|87135758|gb|ABD26500.1| RNAse PH [Novosphingobium aromaticivorans DSM 12444]
          Length = 227

 Score =  294 bits (754), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 118/229 (51%), Positives = 157/229 (68%), Gaps = 2/229 (0%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           MR IS+    +K+AEGS L+ FGDT +L TA++EE+VP ++R    GW+TAEY MLPR+T
Sbjct: 1   MRAISIETAFTKHAEGSVLICFGDTKVLVTASVEERVPPFLRGKGEGWVTAEYSMLPRAT 60

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
             R  REA  G+Q GR+QEIQR+IGR+LR+V DL  LG RQI +DCDVIQADGGTRTAAI
Sbjct: 61  HTRGSREAAKGKQSGRTQEIQRLIGRSLRAVTDLKKLGERQITLDCDVIQADGGTRTAAI 120

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
           +GAWVAL   +Q + D          L   VAA+SCG++ G P++DLDY EDS+ D DAN
Sbjct: 121 SGAWVALRLAVQKLLDSG--AIKEDPLTEKVAAVSCGIVNGQPVLDLDYIEDSSADADAN 178

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           FV+ + G I E Q +AE AT+ ++    +L LA+   A++   Q+  + 
Sbjct: 179 FVLIEGGKIAEAQATAEGATYDEEGLLRLLRLARMGCAEIFAAQEKAVR 227


>gi|22298135|ref|NP_681382.1| ribonuclease PH [Thermosynechococcus elongatus BP-1]
 gi|22294313|dbj|BAC08144.1| ribonuclease PH [Thermosynechococcus elongatus BP-1]
          Length = 249

 Score =  294 bits (754), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 102/238 (42%), Positives = 147/238 (61%), Gaps = 4/238 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ  ++R     R  +++A GS L + G T +L T + +E VP ++  T  GW+TA
Sbjct: 12  RPDGRQPQELRSHQFQRHFTQFALGSVLAQAGQTQVLCTVSFKEGVPKFLEGTGQGWLTA 71

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE +  +  GR+QEIQR+IGR+LRS VDLS LG   +I+D DV+QA
Sbjct: 72  EYRMLPSATRPRQEREFL--KLSGRTQEIQRLIGRSLRSAVDLSLLGECTLIVDADVLQA 129

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTR+ AITG ++AL D L  +            L+  VAA+S G++   P +DL Y E
Sbjct: 130 DAGTRSLAITGGYIALVDALSAL--LQQGVLRKSPLRHQVAAVSVGLIDDEPYLDLSYAE 187

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D    VD N VMT SG  +EVQG+AE  +F +     +L++A+  I +LI++Q+ V++
Sbjct: 188 DVAASVDFNVVMTGSGQFIEVQGTAEMGSFDRGTLDRLLDVARQGIQELIEIQQRVLA 245


>gi|51245125|ref|YP_065009.1| ribonuclease PH [Desulfotalea psychrophila LSv54]
 gi|61215901|sp|Q6ANS2|RNPH_DESPS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|50876162|emb|CAG36002.1| probable ribonuclease PH [Desulfotalea psychrophila LSv54]
          Length = 236

 Score =  294 bits (754), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 107/236 (45%), Positives = 152/236 (64%), Gaps = 4/236 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR + R    +R IS+ R V  +A+ S L++ G+TH++   ++EE VP ++R +  GWIT
Sbjct: 3   MRQNNRTAESLRPISIERGVQLHADASVLIRMGNTHVICGVSVEESVPPFMRGSGKGWIT 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP +T +R +RE       GR+ EIQR+IGR+LR +VDL  +G R + +DCDV+ 
Sbjct: 63  AEYGMLPCATDSRYRRETNGR--SGRTMEIQRLIGRSLRMMVDLETIGERTLRVDCDVLN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG  +AL D    +       ++ +++   V AIS GM  G  ++DLDY 
Sbjct: 121 ADGGTRTASITGGALALRDAFTKLHTTGLLEKMPEIM--PVVAISVGMKDGQALLDLDYV 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           EDS+ D DANFVM   G  +EVQ +AE   FS D F AM +LA+   A+L++L +D
Sbjct: 179 EDSSADADANFVMAGDGRWIEVQSTAEGRPFSHDQFLAMADLAQKGSAELLQLWRD 234


>gi|51891481|ref|YP_074172.1| ribonuclease PH (tRNA nucleotidyltransferase) [Symbiobacterium
           thermophilum IAM 14863]
 gi|61215887|sp|Q67SL5|RNPH_SYMTH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|51855170|dbj|BAD39328.1| ribonuclease PH (tRNA nucleotidyltransferase) [Symbiobacterium
           thermophilum IAM 14863]
          Length = 273

 Score =  294 bits (754), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 165/239 (69%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR  ++MR + +TR  + +AEGS L++ G T ++ TATLE++VP ++R    GWIT
Sbjct: 1   MRQDGRLPHEMRPVRITRHYNIHAEGSVLIEVGRTRVICTATLEDRVPPFLRGRGEGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+TG R  REA  GRQGGR+ EIQR+IGRALRSV+DL+ALG R +IIDCDVIQ
Sbjct: 61  AEYGMLPRATGQRTAREAARGRQGGRTMEIQRLIGRALRSVIDLAALGERTLIIDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VA+ D L  +            +K ++AA S G++ G P++DL Y 
Sbjct: 121 ADGGTRTASITGAYVAMVDALAGLRAAG--LIDRLPVKDYLAATSVGVVGGVPVLDLTYE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS   VD N VMT SG +VE+QG+ E   F++     +L LA+  +  L+ LQ++ + 
Sbjct: 179 EDSRAAVDLNLVMTGSGEVVEIQGTGEERPFTRRELEELLALAESGVRRLVALQREQLG 237


>gi|149198134|ref|ZP_01875181.1| ribonuclease PH [Lentisphaera araneosa HTCC2155]
 gi|149138736|gb|EDM27142.1| ribonuclease PH [Lentisphaera araneosa HTCC2155]
          Length = 238

 Score =  294 bits (754), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 103/232 (44%), Positives = 141/232 (60%), Gaps = 5/232 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR+ GRQ +Q+REI       K + GS L   G T ++ T  +++ +P W  +   GW+T
Sbjct: 1   MRVDGRQNDQLREIKFELGFVKNSLGSALSACGLTEVICTVNIKDGLPGWKSSGSGGWLT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP +T  R KREA  G   GRS EIQR+IGR LR+ VDL  LG R I IDCDV+ 
Sbjct: 61  AEYRMLPGATHTRSKREAGVG---GRSSEIQRLIGRTLRAAVDLDKLGDRTIQIDCDVLN 117

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+I GA +AL + L+ ME+      +S ++K  ++AIS G++ G  ++DL Y 
Sbjct: 118 ADGGTRCASINGAMLALMNALKKMEE--QGVDISGIIKTPLSAISVGVVKGQALLDLCYK 175

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           EDS  DVD N +MT  G  VEVQG+ E A FS+     +L+  +    ++  
Sbjct: 176 EDSAADVDMNVIMTAKGDFVEVQGTGEEAVFSRQELNELLDAGEKGTKEISA 227


>gi|156743859|ref|YP_001433988.1| ribonuclease PH [Roseiflexus castenholzii DSM 13941]
 gi|156235187|gb|ABU59970.1| ribonuclease PH [Roseiflexus castenholzii DSM 13941]
          Length = 261

 Score =  294 bits (753), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 110/242 (45%), Positives = 154/242 (63%), Gaps = 4/242 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  + +R + ++     YAEGS L++ G+T +L TA++EE VP W+R  + GW+T
Sbjct: 2   IRNDGRAPSDLRPVRISIDTYGYAEGSALIEMGNTRVLCTASVEEGVPQWLRGQQRGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY +LPRST  R +RE       GR+QEIQR+IGRALR+ V L AL    + IDCDV+Q
Sbjct: 62  AEYALLPRSTAQRTRRE--RNGLSGRTQEIQRLIGRALRAAVALEALDGFTVTIDCDVLQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITG +VAL   L  +         +  ++  VAA+S G + G  ++DLDY 
Sbjct: 120 ADGGTRTASITGGYVALALALHRLTAAGRL--AANPIRRAVAAVSAGYVGGNALLDLDYS 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS  D+D N V+TD G IVEVQ +AE    S+  F  +++LA D I  L+ LQ++ ++ 
Sbjct: 178 EDSVADMDCNLVLTDDGAIVEVQSTAEARAVSRAEFDVLIDLASDGIHRLLALQREALAP 237

Query: 241 EV 242
            V
Sbjct: 238 VV 239


>gi|260889914|ref|ZP_05901177.1| tRNA nucleotidyltransferase [Leptotrichia hofstadii F0254]
 gi|260860520|gb|EEX75020.1| tRNA nucleotidyltransferase [Leptotrichia hofstadii F0254]
          Length = 239

 Score =  294 bits (753), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 109/233 (46%), Positives = 156/233 (66%), Gaps = 2/233 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R + R+ ++MRE+ +T+    + EGS L++FG+T ++  AT+EEK+P W++ T  GW+T
Sbjct: 9   VRKNNRKNDEMREVKVTKNYIIHPEGSVLMEFGNTKVICNATVEEKIPRWLKGTGSGWVT 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  RV+RE+  G+  GR+ EIQR+IGRALR+ +DL  LG R I+IDCDVIQ
Sbjct: 69  AEYSMLPRATNARVQRESTKGKLSGRTMEIQRLIGRALRAAIDLEKLGERTIMIDCDVIQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA++AL   ++ + D      +   +K  VAAIS G +    ++DL+Y 
Sbjct: 129 ADGGTRTASITGAYLALELAIEKLIDEGKLKDI--PIKSKVAAISVGKVRNELLLDLEYE 186

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           EDS  DVD N VM D G  +E+QG+ E ATF+       + L+K+    L  L
Sbjct: 187 EDSRADVDMNIVMNDKGEFIELQGTGEEATFTHAELLKFIELSKNAFDKLFSL 239


>gi|260435940|ref|ZP_05789910.1| ribonuclease PH [Synechococcus sp. WH 8109]
 gi|260413814|gb|EEX07110.1| ribonuclease PH [Synechococcus sp. WH 8109]
          Length = 247

 Score =  294 bits (753), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 101/240 (42%), Positives = 147/240 (61%), Gaps = 4/240 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  Q+R  S+      +A  S +V  G T +L +  LE+KVP W +    GW++A
Sbjct: 8   RTDGRRPQQLRPFSVNWNPMGFALSSLVVHTGRTAVLCSVCLEDKVPRWRKGEGFGWLSA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP ST  R  RE +  +  GR+QEIQR+IGR+LR+V+D+  LG R ++IDCDVIQA
Sbjct: 68  EYRLLPGSTPQRQSRELM--KLSGRTQEIQRLIGRSLRAVIDMERLGERTLLIDCDVIQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTA+ITGAW+AL    + + D          L   VAA+S G++ G  ++DLDY E
Sbjct: 126 DAGTRTASITGAWLALDQACRSLVD--QGVLEQSPLIDQVAAVSVGLVDGQALLDLDYSE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  +VD N V +  G ++E+QG+AE A FS+     +L+LA+  +  L++ Q+   +  
Sbjct: 184 DSRAEVDLNVVQSGDGRLLEIQGTAEGAPFSRSQLNELLDLAEPGLTSLMQAQRQAFNEH 243


>gi|328953246|ref|YP_004370580.1| Ribonuclease PH [Desulfobacca acetoxidans DSM 11109]
 gi|328453570|gb|AEB09399.1| Ribonuclease PH [Desulfobacca acetoxidans DSM 11109]
          Length = 255

 Score =  293 bits (751), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 111/239 (46%), Positives = 158/239 (66%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R++ +T R    AEG+ L+  G T ++ TAT+EE+VP +++++  GW+T
Sbjct: 12  IRSEGRRLDELRQVKITPRYLSQAEGAVLISLGRTWVICTATVEERVPAFLQDSGQGWVT 71

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T +R  R A  G+   RSQEIQR+IGR+LR+VVDL ALG R I++DCDVIQ
Sbjct: 72  AEYDMLPRATHSRHPRSANLGKPSSRSQEIQRLIGRSLRAVVDLDALGERTIVLDCDVIQ 131

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VAL + L  ++    +   +  +   VAA+S G+     +VDLDY 
Sbjct: 132 ADGGTRTAAITGAFVALCEALAGLQR--QEIIATLPVLDQVAAVSVGLANDQILVDLDYQ 189

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  +VDANFV+T  G +VEVQ + ER  F       ML  A+  +  L + Q+  + 
Sbjct: 190 EDSRAEVDANFVVTGRGQLVEVQATGERGPFRPALLLEMLERAQPALQRLRQAQEKALR 248


>gi|209544228|ref|YP_002276457.1| ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531905|gb|ACI51842.1| ribonuclease PH [Gluconacetobacter diazotrophicus PAl 5]
          Length = 248

 Score =  293 bits (751), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 118/237 (49%), Positives = 157/237 (66%), Gaps = 2/237 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  + +R IS+    + +AEGS L++ G T +L  AT+E +VP ++R    GW+TA
Sbjct: 4   RPSGRAPDALRAISIEPGFAHHAEGSALIRMGGTEVLCAATVESRVPPFLRGQGKGWVTA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVDL ALG   I +DCDV+ A
Sbjct: 64  EYGMLPRATHTRGGREAAKGKQSGRTQEIQRLIGRSLRAVVDLEALGEMSITVDCDVLNA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTR A+ITGAWVAL   L+ +    N+      L   VAA+SCG+     ++DLDY E
Sbjct: 124 DGGTRCASITGAWVALRLALETL--VRNRVLARLPLTAQVAAVSCGLTGAGAVLDLDYDE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           DS    DANFV+T++G IVE+Q +AE A F+QD F  +L LA+   A L   Q+  +
Sbjct: 182 DSAAAADANFVLTETGGIVEIQATAEHAPFAQDQFDTLLRLARTGTAQLFIAQRQAV 238


>gi|108758625|ref|YP_630239.1| ribonuclease PH [Myxococcus xanthus DK 1622]
 gi|122389586|sp|Q1DAT4|RNPH_MYXXD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|108462505|gb|ABF87690.1| ribonuclease PH [Myxococcus xanthus DK 1622]
          Length = 237

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 114/239 (47%), Positives = 152/239 (63%), Gaps = 2/239 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R    +R + LT  VS+YAEGS  V+FG T +L T + EE+VP  +     GW+T
Sbjct: 1   MRSFQRGALDLRPVVLTPGVSRYAEGSVQVEFGHTKVLVTCSTEERVPPHLMGKGSGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T +R +RE+  G+Q GR+ EIQR+IGR+LR+ VDLS LG R + +DCDV+Q
Sbjct: 61  AEYGMLPRATHSRNQRESAKGKQTGRTMEIQRLIGRSLRAAVDLSTLGPRTLTLDCDVLQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGA+VAL   L+ ++      +L       +AA+S G++ G   VDLDY 
Sbjct: 121 ADGGTRTASITGAYVALVLALRSLQKAGTISKL--PKLTPLAAVSVGIVKGEVRVDLDYD 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDST DVD N V T  G +VE+QG+AE   F +    AM++     I  L   Q  V+ 
Sbjct: 179 EDSTADVDLNLVATADGRMVELQGTAEHQLFDRKALDAMVDGGLAAIQKLTAAQAQVLG 237


>gi|78211822|ref|YP_380601.1| RNAse PH [Synechococcus sp. CC9605]
 gi|123578898|sp|Q3AMY6|RNPH_SYNSC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|78196281|gb|ABB34046.1| ribonuclease PH [Synechococcus sp. CC9605]
          Length = 247

 Score =  292 bits (749), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 101/240 (42%), Positives = 147/240 (61%), Gaps = 4/240 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  Q+R  S+T     +A  S +V  G T +L +  LE KVP W +    GW++A
Sbjct: 8   RTDGRRPEQLRPFSVTWNPMGFALSSLVVHTGRTAVLCSVCLEGKVPRWRKGEGLGWLSA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP ST  R  RE +  +  GR+QEIQR+IGR+LR+V+D+  LG R ++IDCDVIQA
Sbjct: 68  EYRLLPGSTPQRQSRELM--KLSGRTQEIQRLIGRSLRAVIDMERLGERTLLIDCDVIQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTA+ITGAW+AL    + + +          L   VAA+S G++ G  ++DLDY E
Sbjct: 126 DAGTRTASITGAWLALDQACRSLVE--QGVLEQSPLVDQVAAVSVGLVDGQALLDLDYSE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  +VD N V    G ++E+QG+AE A FS+     +L+LA+  ++ L++ Q+   +  
Sbjct: 184 DSRAEVDLNVVQAGDGRLLEIQGTAEGAPFSRSQLNELLDLAEPGLSSLMQAQRQAFTEH 243


>gi|313887997|ref|ZP_07821675.1| tRNA nucleotidyltransferase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845952|gb|EFR33335.1| tRNA nucleotidyltransferase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 238

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 101/232 (43%), Positives = 141/232 (60%), Gaps = 3/232 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   RQ ++ R+I +T     + +GS L++ G T ++ +A +E KVP ++R    GW++
Sbjct: 1   MRED-RQNDEARQIRITPNYLDHPDGSVLIECGKTRVICSAMIENKVPGFLRGKNKGWLS 59

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           +EY MLP ST  R  R+   G+  GRS EI R+IGRALR+ +DL  +G R I IDCDVI 
Sbjct: 60  SEYSMLPGSTPTRKVRDISKGKLDGRSSEISRLIGRALRTCIDLDKIGERTIWIDCDVIS 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITG+++AL   ++      NK      +   VAAIS G + G  +VDLD+ 
Sbjct: 120 ADGGTRTAAITGSYIALKLAVKK--ALENKKFEEDPIVSKVAAISVGKVNGVKLVDLDFK 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           EDS  DVD N VM D   ++E+QG+ E+ TFS +     L  AK  I ++  
Sbjct: 178 EDSNADVDLNVVMNDDFQLIEIQGTGEKDTFSIEELNEFLLGAKRCIGEIFD 229


>gi|226226977|ref|YP_002761083.1| ribonuclease PH [Gemmatimonas aurantiaca T-27]
 gi|226090168|dbj|BAH38613.1| ribonuclease PH [Gemmatimonas aurantiaca T-27]
          Length = 247

 Score =  291 bits (746), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 109/237 (45%), Positives = 141/237 (59%), Gaps = 4/237 (1%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R    +R +SL R    YAEGSCL+ FG T +L  A++E  VP W + +  GW+TAEY M
Sbjct: 13  RSNEALRPVSLERGAVLYAEGSCLISFGKTRVLCAASVETGVPGWKKGSGEGWVTAEYAM 72

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LPR+T  R  RE    + GGR+QEIQR+IGR++R+++D    G   I +DCDV+QADGGT
Sbjct: 73  LPRATRTRSSRE--RQQVGGRTQEIQRLIGRSVRAMLDDYRFGEFTIKVDCDVLQADGGT 130

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           RTAAITGA VA+ D    M            +K  VAAIS GM+ G   +DLDY ED   
Sbjct: 131 RTAAITGACVAVQDAFNWMVSTGRIIA--SPVKRRVAAISVGMVDGEVRLDLDYEEDVRA 188

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            VD N VM+  G  VEVQG+ E  TFS+     +L  A   I  L++ Q  V++  V
Sbjct: 189 GVDMNVVMSSEGRFVEVQGTGEHGTFSRQELDGLLGTAVAGIEQLLEAQTRVLAGPV 245


>gi|308234186|ref|ZP_07664923.1| RNAse PH [Atopobium vaginae DSM 15829]
 gi|328944441|ref|ZP_08241903.1| tRNA nucleotidyltransferase [Atopobium vaginae DSM 15829]
 gi|327491025|gb|EGF22802.1| tRNA nucleotidyltransferase [Atopobium vaginae DSM 15829]
          Length = 272

 Score =  291 bits (746), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 119/236 (50%), Positives = 154/236 (65%), Gaps = 4/236 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   + R  +L R+V KYA+GSCL+  GDT +L +AT+E+ +P W + +  GW++A
Sbjct: 38  RSYGRSAFEARPCTLERQVMKYADGSCLITCGDTRVLCSATVEDTLPTWRKLSHLGWVSA 97

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP S   R  RE    +  GRS EI+R+IGR+LRSVVD S LG   I IDCDV+QA
Sbjct: 98  EYAMLPASAKRRTPREYKGRK--GRSMEIERLIGRSLRSVVDFSKLGEHTITIDCDVLQA 155

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+I GAWVALHD  + M +     +    L G VAAIS G++ G  +VDLDY E
Sbjct: 156 DGGTRTASIVGAWVALHDACRKMVEADKIARC--PLTGQVAAISMGIVHGELLVDLDYPE 213

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           DS  DVD N VM D G +VE+QG+ ERAT S+    A+L+ ++  +  L  LQK V
Sbjct: 214 DSNADVDLNVVMRDDGGLVEIQGTGERATLSRHDLNALLDASEPALTKLFALQKSV 269


>gi|992693|gb|AAB01514.1| RNase PH [Caulobacter crescentus CB15]
          Length = 238

 Score =  291 bits (745), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 118/233 (50%), Positives = 163/233 (69%), Gaps = 3/233 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR S R  +Q+R ++L   V++YA  + L+ FG T +L TAT+EE VP W+RN   GW+T
Sbjct: 1   MRPSERAPDQLRAVTLETGVNRYAR-ALLIGFGHTKVLVTATVEENVPGWMRNKGAGWVT 59

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLPR+T  R +REA +G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDV+Q
Sbjct: 60  AEYGMLPRATHTRGRREAAAGKQTGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVVQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGAWVAL    +++ D       +  + G VAA+SCG+  G P++DLDY 
Sbjct: 120 ADGGTRTAAITGAWVALRLATKYLLD--EGVLKTDPILGQVAAVSCGVFNGVPVLDLDYE 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           EDS  + D+NFV+T  G IVE+Q + E   F++  F ++    ++ +   ++L
Sbjct: 178 EDSNAEADSNFVLTGVGDIVEIQATGETRGFTRAEFESLYGAGREGVQRTVRL 230


>gi|33864097|ref|NP_895657.1| ribonuclease PH [Prochlorococcus marinus str. MIT 9313]
 gi|61216018|sp|Q7V4V8|RNPH_PROMM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|33635681|emb|CAE22005.1| ribonuclease PH [Prochlorococcus marinus str. MIT 9313]
          Length = 244

 Score =  290 bits (744), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 104/240 (43%), Positives = 150/240 (62%), Gaps = 4/240 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  + MR + +T     +A  S +++ G T +L +  +EE VP W +    GW++A
Sbjct: 8   RADGRLADVMRPLQITWDPMGFALSSLIIRTGRTSVLCSVCVEEGVPRWRKGQGKGWLSA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP ST  R  RE +  +  GR+QEIQR+IGR+LR+V+D++ALG   + IDCDVIQA
Sbjct: 68  EYRLLPGSTPQRQNRELL--KLSGRTQEIQRLIGRSLRAVIDMAALGETTLRIDCDVIQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTA+ITGAW+AL      + +        Q +   VAA+S G++  YP++DLDY E
Sbjct: 126 DAGTRTASITGAWIALKRGCDRLLE--QGLLTHQPVIEQVAAVSVGLVESYPLLDLDYSE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  DVD N VM  +GH++E+QG+AE A FS++    +LNLA+  +  L   Q+  +  E
Sbjct: 184 DSRADVDLNVVMGSNGHLLELQGTAEGAPFSRNQLNDLLNLAEPGLQHLQAFQRSALMQE 243


>gi|148238656|ref|YP_001224043.1| ribonuclease PH [Synechococcus sp. WH 7803]
 gi|147847195|emb|CAK22746.1| Ribonuclease PH [Synechococcus sp. WH 7803]
          Length = 241

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 100/238 (42%), Positives = 147/238 (61%), Gaps = 4/238 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ + +R  ++      +A  S +V+ G T +L +   EE VP W R+   GW++A
Sbjct: 6   RKDGRQASALRPFAVEWDPMGFALSSVIVRTGRTAVLCSVCHEEGVPRWRRDQGLGWLSA 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP ST  R +RE +  +  GR+QEIQR+IGR+LR+ + + ALG   ++IDCDVIQA
Sbjct: 66  EYRLLPGSTPERQRREWL--KLSGRTQEIQRLIGRSLRAALSMEALGENTLLIDCDVIQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTA++TGAW+AL +  + +         S  +   VAA+S G+L G  ++DLDY E
Sbjct: 124 DAGTRTASVTGAWLALQNACESLVK--QGVLQSNPVCSQVAAVSVGLLGGEALLDLDYSE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  DVD N VM DSG ++E+QG+AE   FS+     +L+ A+  +  L+  QK+ + 
Sbjct: 182 DSQADVDLNVVMNDSGELLELQGTAEGKAFSRQQLNLLLDRAEPGLKQLMDAQKEALR 239


>gi|116075628|ref|ZP_01472887.1| ribonuclease PH [Synechococcus sp. RS9916]
 gi|116066943|gb|EAU72698.1| ribonuclease PH [Synechococcus sp. RS9916]
          Length = 255

 Score =  290 bits (742), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 99/240 (41%), Positives = 144/240 (60%), Gaps = 4/240 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR    +R  ++      +A  S +V+ G T +L +   +E VP W +    GW++A
Sbjct: 17  RNDGRSAADLRPFAINWDPMGFAISSLIVRTGRTAVLCSVCHQEGVPRWRKGQGKGWLSA 76

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP ST  R  RE +  +  GR+QEIQR+IGR+LR+ +D+ ALG   ++IDCDVIQA
Sbjct: 77  EYRLLPGSTPERQNRELL--KLSGRTQEIQRLIGRSLRACIDMEALGENTLLIDCDVIQA 134

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTA+ITGAWVAL      +   +      Q +   VAA+S G++   P++DLDY E
Sbjct: 135 DAGTRTASITGAWVALKHACDQL--LAQGLVTRQPITKQVAAVSVGLVNSAPLLDLDYSE 192

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  DVD N VM +  H++E+QG+AE A FS+     +L+LA+  +  L+  Q+  + N 
Sbjct: 193 DSRADVDLNVVMDEHQHLLEIQGTAEGAAFSRSELNGLLDLAEPGLQQLMDSQRQALRNR 252


>gi|33864812|ref|NP_896371.1| ribonuclease PH [Synechococcus sp. WH 8102]
 gi|61216015|sp|Q7U9I1|RNPH_SYNPX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|33632335|emb|CAE06791.1| ribonuclease PH [Synechococcus sp. WH 8102]
          Length = 249

 Score =  290 bits (742), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 105/239 (43%), Positives = 152/239 (63%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   ++R  S+      +A  S +V+ G T +L + +LEE VP W R    GW++A
Sbjct: 8   RADGRGATELRPFSVDWDPMSFALSSLIVRTGRTAVLCSVSLEEDVPRWRRGNGCGWLSA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP ST  R  RE +  +  GR+QEIQR+IGR+LR+V+D+ ALG R ++IDCDVIQA
Sbjct: 68  EYRLLPGSTPQRQSRELM--KLSGRTQEIQRLIGRSLRAVLDMDALGERTLLIDCDVIQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTA+ITGAW+AL      +   S        ++  +AA+S G++ G P++DLDY E
Sbjct: 126 DAGTRTASITGAWIALRRACDLLR--SQGVLTQDPIRQQLAAVSVGLIDGTPLLDLDYSE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  DVD N V    G ++E+QG+AE+A FS+    AMLNLA+  + +L++ Q+  ++ 
Sbjct: 184 DSRADVDLNVVTAGDGRLLELQGTAEQAPFSRSELDAMLNLAESGLQELMQGQRHALAT 242


>gi|328955985|ref|YP_004373318.1| RNAse PH [Coriobacterium glomerans PW2]
 gi|328456309|gb|AEB07503.1| RNAse PH [Coriobacterium glomerans PW2]
          Length = 246

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 120/238 (50%), Positives = 157/238 (65%), Gaps = 4/238 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR    +R + L R V K A GSC+V+FGDT +L  AT+E+ +P W R ++ GW+TA
Sbjct: 8   RADGRGAGDLRRVRLERDVMKNALGSCMVEFGDTRVLCAATIEDGLPGWRRASRSGWVTA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP STG R +RE    R  GRSQEI+R+IGR+LR+  +L ALG   + IDCDVIQA
Sbjct: 68  EYAMLPASTGRRTRREFGQRR--GRSQEIERLIGRSLRTATNLRALGEHTVTIDCDVIQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAA+TGAWVALHD L    + +   ++   L   VAA+S G++ G  ++DLDY E
Sbjct: 126 DGGTRTAALTGAWVALHDALAAWVEAARIPRI--PLVSQVAAVSMGLVDGNVLLDLDYAE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           DS  +VD N V T S  IVE+QG+ ER  F + H  A+L+L  + I  LI LQ +V +
Sbjct: 184 DSRAEVDMNLVCTQSREIVEIQGTGERTPFDRAHLDALLDLGFEGIERLIALQNEVTA 241


>gi|301168382|emb|CBW27972.1| putative ribonuclease [Bacteriovorax marinus SJ]
          Length = 234

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 107/231 (46%), Positives = 149/231 (64%), Gaps = 5/231 (2%)

Query: 10  QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
           Q R+I  T  ++ YA GS + +FG+T +  TAT+EE VP ++++   GWITAEY MLP S
Sbjct: 8   QPRDIKFTAGINPYAAGSVIAEFGNTKVHITATVEESVPRFLKDKGQGWITAEYSMLPSS 67

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
           T  R +RE    +  GR+QEIQR+IGR+LR+++DL  LG R I IDCDV+ ADGGTRT +
Sbjct: 68  THTRNRRE--RSKVSGRTQEIQRLIGRSLRAIIDLEKLGERSIQIDCDVLVADGGTRTTS 125

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVD 188
           I+GA+VAL   ++ + +          +K  +AA+S G+   G  I DL+Y EDST + D
Sbjct: 126 ISGAYVALEMAVEKLLESG--LIEETPIKEPLAALSVGINSAGKVIADLNYDEDSTCETD 183

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            N VMT SG  +EVQG+AE   FS+D   A+L  A + I  + K Q+ V+S
Sbjct: 184 MNIVMTKSGKFIEVQGTAEGEAFSRDELNAILECATEAIQSVFKEQEKVLS 234


>gi|312968015|ref|ZP_07782226.1| ribonuclease PH [Escherichia coli 2362-75]
 gi|312287274|gb|EFR15183.1| ribonuclease PH [Escherichia coli 2362-75]
          Length = 211

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 110/212 (51%), Positives = 145/212 (68%), Gaps = 2/212 (0%)

Query: 29  LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
           LV+FGDT +L TA++EE VP +++    GWITAEYGMLPRST  R  REA  G+QGGR+ 
Sbjct: 2   LVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTM 61

Query: 89  EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
           EIQR+I RALR+ VDL ALG   I +DCDV+QADGGTRTA+ITGA VAL D L  + +  
Sbjct: 62  EIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACVALADALNKLVE-- 119

Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
           N    +  +KG VAA+S G++ G  + DL+Y EDS  + D N VMT+ G I+EVQG+AE 
Sbjct: 120 NGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEG 179

Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 180 EPFTHEELLTLLALARGGIESIVATQKAALAN 211


>gi|257875805|ref|ZP_05655458.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC20]
 gi|257809971|gb|EEV38791.1| ribonuclease PH/Ham1 [Enterococcus casseliflavus EC20]
          Length = 210

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 109/212 (51%), Positives = 149/212 (70%), Gaps = 3/212 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+E  +R + +   V K+ EGS ++ FGDT ++ +AT+EE+VP ++R+T  GW+T
Sbjct: 1   MRHDGRKETMLRPVKIQTNVYKHPEGSVVISFGDTTVICSATIEERVPPFLRDTGKGWVT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +RE+  G+  GR+ EIQR+I R+LR+VVDL  LG R I++DCDV+Q
Sbjct: 61  AEYSMLPRATNTRNRRESAKGKLSGRTMEIQRLIARSLRAVVDLEKLGERSIVVDCDVVQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADGGTRTA+ITGA+VAL   +  +    +K      +K H+AAIS G+L  G  + DLDY
Sbjct: 121 ADGGTRTASITGAFVALRLAIDTL--LRDKALTEDPIKEHLAAISVGILPDGTCVTDLDY 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
            EDS+  VD N VMT+SG  VE+QG+ E ATF
Sbjct: 179 QEDSSAAVDMNLVMTESGRFVELQGTGEEATF 210


>gi|332749902|gb|EGJ80314.1| ribonuclease PH [Shigella flexneri K-671]
          Length = 211

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 112/212 (52%), Positives = 146/212 (68%), Gaps = 2/212 (0%)

Query: 29  LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
           LV+FGDT +L TA++EE VP +++    GWITAEYGMLPRST  R  REA  G+QGGR+ 
Sbjct: 2   LVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTM 61

Query: 89  EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
           EIQR+I RALR+ VDL ALG   I +DCDV+QADGGTRTA+ITGA VAL D LQ + +  
Sbjct: 62  EIQRLIARALRAAVDLKALGEFTITLDCDVLQADGGTRTASITGACVALADALQKLVE-- 119

Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
           N    +  +KG VAA+S G++ G  I DL+Y EDS  + D N VMT+ G I+EVQG+AE 
Sbjct: 120 NGKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEG 179

Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 180 EPFTHEELLTLLALARGGIESIVATQKAALAN 211


>gi|304440366|ref|ZP_07400255.1| ribonuclease PH/Ham1 protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371118|gb|EFM24735.1| ribonuclease PH/Ham1 protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 435

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 100/240 (41%), Positives = 154/240 (64%), Gaps = 4/240 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R+ N++R++ +T       +GSCLV+ G+T ++ TA +E+KVP +++    GW++
Sbjct: 1   MR--DREFNKIRDLKITPNYLSSPDGSCLVEMGNTKIIVTAMIEDKVPFFLKGQGVGWLS 58

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY M+P ST  R  R+   G+  GRSQEIQR+IGRALRS +DLS +G R I IDCDVI 
Sbjct: 59  AEYSMIPGSTQRRKPRDISRGKIDGRSQEIQRLIGRALRSAIDLSLIGERTIWIDCDVIS 118

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT ++TG +VAL   +        K   +  +K  VAAIS G + G  +VDLD+ 
Sbjct: 119 ADGGTRTLSVTGGFVALKLAVNKY--LKEKLIFANPIKRKVAAISLGKVYGRLMVDLDFN 176

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +DS  DVD N VM +  +I+E+QG++E++         ++ L+++ I +++K+ +D + +
Sbjct: 177 DDSKADVDMNIVMDEDHNIIEIQGTSEKSPLKIKELEELVKLSEETIDEIMKIVEDTVPS 236


>gi|17227565|ref|NP_484113.1| ribonuclease PH [Nostoc sp. PCC 7120]
 gi|21759403|sp|Q8Z0M2|RNPH_ANASP RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|17135047|dbj|BAB77593.1| ribonuclease PH [Nostoc sp. PCC 7120]
          Length = 247

 Score =  288 bits (737), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 92/225 (40%), Positives = 137/225 (60%), Gaps = 4/225 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  ++R I+   + +++A GS L   G+T +L T ++ E VP ++  +  GW+TA
Sbjct: 5   RPDGRKPYELRPINFHTKFTRFAPGSVLTICGETKVLCTVSVAESVPKFLTGSGKGWLTA 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLP +T  R +RE +  +  GR+QEIQR+IGR+LR+ +D  ALG R + +D DV+QA
Sbjct: 65  EYRMLPSATQQRHERELL--KLSGRTQEIQRLIGRSLRAALDFEALGERTLTVDADVLQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTAAITG +VAL + +  +            L G +AA+S G+L     +DL+Y E
Sbjct: 123 DAGTRTAAITGGFVALAEAISQL--LQRGVLERSPLCGQIAAVSVGLLEQEAYLDLNYIE 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           D    VD N VM  +  I+EVQG+AE  +FS+     +L+ A+  
Sbjct: 181 DVAATVDFNVVMNKNLGIIEVQGTAEEGSFSRTQLNQLLDCAETG 225


>gi|256372516|ref|YP_003110340.1| ribonuclease PH [Acidimicrobium ferrooxidans DSM 10331]
 gi|256009100|gb|ACU54667.1| ribonuclease PH [Acidimicrobium ferrooxidans DSM 10331]
          Length = 238

 Score =  287 bits (736), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 115/231 (49%), Positives = 156/231 (67%), Gaps = 2/231 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   ++R +++T   ++ A GS L++ G T +L T +LEE+VP W+R    GW++A
Sbjct: 4   RPVGRGAAELRPVAITPDFTEMAPGSVLMRMGRTAVLCTVSLEERVPAWLRGQGRGWVSA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP ST  R  REAV GRQ GR+ EIQR+IGRALRSVVDL  LG  Q+++DCDV+QA
Sbjct: 64  EYALLPGSTPTRTAREAVRGRQQGRTVEIQRLIGRALRSVVDLERLGEHQLVVDCDVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAAITG ++AL   L+ + +          L G +AA+S G++ G P++DLDY E
Sbjct: 124 DGGTRTAAITGGFLALERALERLAE--GGLVQPAALTGRLAAVSVGVVDGEPLLDLDYDE 181

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           DS  DVD N VMTD G  VEVQG+AE A F++     +L LA+  I +L++
Sbjct: 182 DSRADVDMNVVMTDGGRYVEVQGAAEGAPFAKATLVELLKLAERGIGELLE 232


>gi|116072072|ref|ZP_01469340.1| Ribonuclease PH [Synechococcus sp. BL107]
 gi|116065695|gb|EAU71453.1| Ribonuclease PH [Synechococcus sp. BL107]
          Length = 243

 Score =  287 bits (736), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 104/240 (43%), Positives = 151/240 (62%), Gaps = 4/240 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  N +R  S+T     +A  S  V+ G T +L +  L++ VP W R    GW++A
Sbjct: 8   RADGRCRNDLRPFSVTWDPMGFALSSVTVRTGRTTVLCSVCLDDNVPRWRRGEGLGWLSA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP ST  R  RE +  +  GR+QEIQR+IGR+LR+ VD++ LG R ++IDCDVI+A
Sbjct: 68  EYRLLPGSTPQRQGRELM--KLSGRTQEIQRLIGRSLRAAVDMAKLGERTLLIDCDVIEA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTAAITGAW+AL      +   S     S  L+  VAA+S G++ G  ++DLDY E
Sbjct: 126 DAGTRTAAITGAWLALQRACSRL--VSQGILESSPLQSQVAAVSVGLVDGQALLDLDYSE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  +VD N V  D G ++EVQG+AE A FS+     +L+LA+  +  L++ Q++ ++++
Sbjct: 184 DSRAEVDLNVVQADDGRLLEVQGTAEGAPFSRAQLDELLDLAEPGLKQLMQAQREALASD 243


>gi|327542216|gb|EGF28707.1| ribonuclease PH [Rhodopirellula baltica WH47]
          Length = 246

 Score =  287 bits (736), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 104/238 (43%), Positives = 143/238 (60%), Gaps = 4/238 (1%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  +Q+R + +     +    S L K G T +L TA++E  VP W+     GW+TAEY M
Sbjct: 9   RPHDQIRPVEIECGYLESNPASVLYKSGKTIVLCTASVETNVPPWMEGRGKGWVTAEYNM 68

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST  R +R+  SG+  GR+ EIQR+IGR+LR+++DL ALG R I +DCDV+QADGGT
Sbjct: 69  LPGSTSPRKRRD-RSGKVDGRTTEIQRLIGRSLRAIIDLHALGERSITVDCDVLQADGGT 127

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQV---LKGHVAAISCGMLCGYPIVDLDYGED 182
           RTA+ITG ++AL   +  +               L+  VAAIS G++    ++DLDY  D
Sbjct: 128 RTASITGGYIALSLAVSQLASIPELAPPIDPTAVLRDSVAAISVGVIGEDVVLDLDYRLD 187

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           S  DVD N +MT SG  +E+QG+ E ATF       +L L K  IA+L KLQK  ++ 
Sbjct: 188 SAADVDMNVIMTGSGRFIELQGTGEEATFDDVQLAELLRLGKIGIAELTKLQKAQLAT 245


>gi|293393625|ref|ZP_06637935.1| tRNA nucleotidyltransferase [Serratia odorifera DSM 4582]
 gi|291423960|gb|EFE97179.1| tRNA nucleotidyltransferase [Serratia odorifera DSM 4582]
          Length = 211

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 107/212 (50%), Positives = 143/212 (67%), Gaps = 2/212 (0%)

Query: 29  LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
           LV+FGDT +L TAT+E+ VP +++    GWITAEYGMLPRST +R  REA  G+QGGR+ 
Sbjct: 2   LVEFGDTKVLCTATVEDGVPRFLKGQGQGWITAEYGMLPRSTHSRNAREAAKGKQGGRTL 61

Query: 89  EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
           EIQR+I R+LR+ VDL  LG   I +DCDV+QADGGTRTA+ITGA VAL D L  +    
Sbjct: 62  EIQRLIARSLRAAVDLKKLGEFTITLDCDVLQADGGTRTASITGACVALADALNALVAAG 121

Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
                +  +KG VAA+S G++ G  + DL+Y EDS  + D N VM + G ++EVQG+AE 
Sbjct: 122 KL--KANPMKGMVAAVSVGIVNGEALCDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAEG 179

Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             FS D   A+L LA+  I  + + QK  +++
Sbjct: 180 EPFSHDELLALLALARGGIETIFQAQKAALAD 211


>gi|32473863|ref|NP_866857.1| ribonuclease PH [Rhodopirellula baltica SH 1]
 gi|61216016|sp|Q7URE2|RNPH_RHOBA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|32444399|emb|CAD74398.1| ribonuclease PH [Rhodopirellula baltica SH 1]
          Length = 246

 Score =  286 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 105/236 (44%), Positives = 142/236 (60%), Gaps = 4/236 (1%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  +Q+R + +     +    S L K G T +L TA++E  VP W+     GW+TAEY M
Sbjct: 9   RPHDQIRPVEIECGYLESNPASVLYKSGKTIVLCTASVETNVPPWMEGRGKGWVTAEYNM 68

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST  R +R+  SG+  GR+ EIQR+IGR+LR++VDL ALG R I +DCDV+QADGGT
Sbjct: 69  LPGSTSPRKRRD-RSGKVDGRTTEIQRLIGRSLRAIVDLHALGERSITVDCDVLQADGGT 127

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQV---LKGHVAAISCGMLCGYPIVDLDYGED 182
           RTA+ITG ++AL   +  +               L+  VAAIS G++    ++DLDY  D
Sbjct: 128 RTASITGGYIALSLAVSQLAAIPELDPPVDPTAVLRDSVAAISVGVIGEDVVLDLDYRLD 187

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           S  DVD N +MT SG  +E+QG+ E ATF       +L L K  IA+L KLQK  +
Sbjct: 188 SAADVDMNVIMTGSGRFIELQGTGEEATFDDVQLAELLRLGKIGIAELTKLQKAQL 243


>gi|261415038|ref|YP_003248721.1| ribonuclease PH [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261371494|gb|ACX74239.1| ribonuclease PH [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326761|gb|ADL25962.1| tRNA nucleotidyltransferase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 241

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 104/241 (43%), Positives = 152/241 (63%), Gaps = 5/241 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R+  + R + +T      A+GS L++ G T ++  ATL  KVP W+     GWITA
Sbjct: 5   RTD-RKPEEFRNLKMTTGFISSADGSVLIEMGRTRVICNATLLPKVPDWLAGRGTGWITA 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP+STG RV+RE       GR+QEIQR++GR+LR   DL+ALG   I++DCDVI+A
Sbjct: 64  EYSLLPQSTGKRVERERKGA--SGRTQEIQRLVGRSLRGAADLAALGENAIVVDCDVIEA 121

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+I G +VAL   ++ +++     Q  Q+LK  + AIS G++ G P+ DL Y E
Sbjct: 122 DGGTRTASIIGGFVALAIAVKKIKERLGITQ--QILKHGITAISVGVVDGNPLCDLCYVE 179

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  DVD N VM D+ + +EVQG+ E A+F +     +L+L ++   ++ K Q ++I  E
Sbjct: 180 DSAADVDMNVVMQDAKNFIEVQGTGEHASFDRAMLNTLLDLGENACKEIYKKQMELIGGE 239

Query: 242 V 242
           +
Sbjct: 240 L 240


>gi|317968641|ref|ZP_07970031.1| ribonuclease PH [Synechococcus sp. CB0205]
          Length = 244

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 101/239 (42%), Positives = 145/239 (60%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR    +R          +A  S  V  G+T ++ +  LEE VP W + +  GW++A
Sbjct: 7   RRDGRSATDLRSTRFAWDPMGFALSSVTVYTGNTAVICSVCLEEGVPKWRKGSGKGWLSA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           +Y +LP ST +R  RE +  +  GR+QEIQR+I R+LR+ +DL ALG R + IDCDV+QA
Sbjct: 67  DYRLLPASTPSRQPRELM--KLSGRTQEIQRLIARSLRACLDLEALGERTLQIDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTA+ITGAW AL   LQ +E           L G VAA+S G++ G  ++DLDY E
Sbjct: 125 DAGTRTASITGAWAALAVGLQRLEQ--RGVLERSPLVGQVAAVSVGLVDGAALLDLDYSE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  +VD N VM    H++E+QG+AE A FS+    ++++LA+  I  L++ QK  ++ 
Sbjct: 183 DSRAEVDLNVVMNQEQHLLEIQGTAEGAPFSRQQLSSLVDLAESGIDQLMQAQKQALAE 241


>gi|78185641|ref|YP_378075.1| ribonuclease PH [Synechococcus sp. CC9902]
 gi|78169935|gb|ABB27032.1| RNAse PH [Synechococcus sp. CC9902]
          Length = 243

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 106/240 (44%), Positives = 150/240 (62%), Gaps = 4/240 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  N +R  S+T     +A  S  V+ G T +L +  L++ VP W R    GW++A
Sbjct: 8   RADGRCRNALRPFSVTWDPMGFALSSVTVRTGRTTVLCSVCLDDNVPRWRRGEGLGWLSA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP ST  R  RE +  +  GR+QEIQR+IGR+LR+ VD++ LG R ++IDCDVIQA
Sbjct: 68  EYRLLPGSTPQRQGRELM--KLSGRTQEIQRLIGRSLRAAVDMAQLGERTLLIDCDVIQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTAAITGAW+ALH     +   S     +  L+  VAA+S G++    ++DLDY E
Sbjct: 126 DAGTRTAAITGAWLALHRACSRL--VSQGILENSPLQSQVAAVSVGLVDSQALLDLDYSE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  +VD N V  D G ++EVQG+AE A FS+    A+L+LA+  +  L++ Q+  + +E
Sbjct: 184 DSRAEVDLNVVQADDGRLLEVQGTAEGAPFSRAQLDALLDLAEPGLRQLMEAQRQALVSE 243


>gi|124024144|ref|YP_001018451.1| ribonuclease PH [Prochlorococcus marinus str. MIT 9303]
 gi|123964430|gb|ABM79186.1| ribonuclease PH [Prochlorococcus marinus str. MIT 9303]
          Length = 244

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 104/240 (43%), Positives = 149/240 (62%), Gaps = 4/240 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  + MR + +T     +A  S +++ G T +L +  +EE VP W +    GW++A
Sbjct: 8   RADGRLADVMRPLQVTWDPMGFALSSLIIRTGRTAVLCSVCVEEGVPRWRQGQGKGWLSA 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP ST  R  RE +  +  GR+QEIQR+IGR+LR+V+D++AL    + IDCDVIQA
Sbjct: 68  EYRLLPGSTPQRQNRELL--KLSGRTQEIQRLIGRSLRAVIDMAALRETTLRIDCDVIQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTRTAAITGAW+AL      + +        Q +   VAA+S G++  YP++DLDY E
Sbjct: 126 DAGTRTAAITGAWIALKRGCDRLLE--QGLLTHQPVIDQVAAVSVGLVDSYPLLDLDYSE 183

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS  DVD N VM  +GH++E+QG+AE A FS++    +LNLA+  +  L   Q+  +  E
Sbjct: 184 DSRADVDLNVVMGSNGHLLELQGTAEGAPFSRNQLNDLLNLAEPGLQHLQTFQRSALMQE 243


>gi|289644629|ref|ZP_06476695.1| ribonuclease PH [Frankia symbiont of Datisca glomerata]
 gi|289505557|gb|EFD26590.1| ribonuclease PH [Frankia symbiont of Datisca glomerata]
          Length = 234

 Score =  285 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 103/228 (45%), Positives = 141/228 (61%), Gaps = 7/228 (3%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
           +++TR    +AEGS L++FG T +L  A++ E VP W + +  GW+TAEY MLPR+T  R
Sbjct: 1   MNITRGWQDHAEGSALIEFGRTRVLCAASVTEGVPRWRKGSGLGWVTAEYSMLPRATNTR 60

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
             RE+V GR GGR+ EI R+IGR+LR+ +DL  LG   I IDCDV+ ADGGTRTA+ITGA
Sbjct: 61  NDRESVRGRIGGRTHEISRLIGRSLRTCIDLKILGENTIAIDCDVLVADGGTRTASITGA 120

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
           +VAL D    +            L   VAA+S G++ G P++DL Y EDS  D D N + 
Sbjct: 121 YVALSDACGWLGR-------PDALIRSVAAVSVGVVAGRPLLDLAYDEDSGADTDMNVIC 173

Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           T  G  VEVQG+AE   F +     +L+LA    A L ++Q+  ++  
Sbjct: 174 TGDGGFVEVQGTAEGLPFDRAMLDQLLDLAVGGCARLTEVQRAALAGP 221


>gi|89052697|ref|YP_508148.1| ribonuclease PH [Jannaschia sp. CCS1]
 gi|88862246|gb|ABD53123.1| RNAse PH [Jannaschia sp. CCS1]
          Length = 209

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 109/209 (52%), Positives = 152/209 (72%), Gaps = 2/209 (0%)

Query: 29  LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
           +++ GDTH+L TATLE +VP +++N+  GW+TAEYGMLPR+T  R++REA +G+Q GR+Q
Sbjct: 1   MIRCGDTHVLCTATLEARVPPFLKNSGLGWVTAEYGMLPRATHTRMRREAAAGKQSGRTQ 60

Query: 89  EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
           EIQR+IGR+LR+ +D SALG RQI +DCDVIQADGGTR A+ITG WVAL   +  +    
Sbjct: 61  EIQRLIGRSLRAGIDRSALGERQITVDCDVIQADGGTRCASITGGWVALRLAVNKLLKSG 120

Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
                +  +  H+AA+SCG+  G P++DLDY EDS    D NF+MT +G +VE+Q SAE 
Sbjct: 121 EIV--TDPIVDHIAAVSCGIYAGQPVLDLDYPEDSEAGTDGNFIMTGAGQVVELQASAEG 178

Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           ATFS+D F  + +LA+  +A+L++ Q   
Sbjct: 179 ATFSRDEFNELYSLAEKGVAELVQAQAAA 207


>gi|283780454|ref|YP_003371209.1| ribonuclease PH [Pirellula staleyi DSM 6068]
 gi|283438907|gb|ADB17349.1| ribonuclease PH [Pirellula staleyi DSM 6068]
          Length = 247

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 109/239 (45%), Positives = 152/239 (63%), Gaps = 6/239 (2%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  +++R I + R  +K + GS L++ G+T +L TA+++ KVP W+     GWITAEY M
Sbjct: 3   RTASELRPIKIKRNYTKMSPGSVLIEAGETVVLCTASVDAKVPDWLAGKGKGWITAEYNM 62

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST  R +RE    +  GR+ EIQR+IGR+LR+V+DL ALG R + +DCDV+QADGGT
Sbjct: 63  LPHSTRPRKQRE--RAKTDGRTTEIQRLIGRSLRAVIDLEALGERLLQVDCDVLQADGGT 120

Query: 126 RTAAITGAWVALHDCLQHMED----CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           RTA+ITGA++A+ D ++ ++       N      VL   VAAIS G++ G P +DL+Y +
Sbjct: 121 RTASITGAFIAVVDAIRSIKGDANNPKNLPITRPVLLDSVAAISVGIVEGKPTLDLEYVQ 180

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   DVD N VMT SG  VE+QG+ E ATF      A+L LA+  I  L  +QK  +  
Sbjct: 181 DVDADVDMNVVMTGSGKFVEIQGTGEEATFDDAQLAALLKLARQGITQLTTIQKTALGK 239


>gi|156936190|ref|YP_001440106.1| hypothetical protein ESA_04089 [Cronobacter sakazakii ATCC BAA-894]
 gi|156534444|gb|ABU79270.1| hypothetical protein ESA_04089 [Cronobacter sakazakii ATCC BAA-894]
          Length = 211

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 107/212 (50%), Positives = 143/212 (67%), Gaps = 2/212 (0%)

Query: 29  LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
           LV+FGDT +L TA++EE VP +++    GWITAEYGMLPR+T  R  REA  G+QGGR+ 
Sbjct: 2   LVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGMLPRATHTRNAREAAKGKQGGRTL 61

Query: 89  EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
           EIQR+I R+LR+ VDL ALG   I +DCDVIQADGGTRTA+ITGA VAL D L  +    
Sbjct: 62  EIQRLIARSLRAAVDLKALGEFTITLDCDVIQADGGTRTASITGACVALADALNALVAAG 121

Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
                +  +KG VAA+S G++ G  + DL+Y EDS  + D N VMT+ G ++EVQG+AE 
Sbjct: 122 KL--KTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRMIEVQGTAEG 179

Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             F+ +    +L LA+  I  ++  QK  ++N
Sbjct: 180 EPFTHEELLDLLALARGGIESIVASQKAALAN 211


>gi|320352955|ref|YP_004194294.1| RNAse PH [Desulfobulbus propionicus DSM 2032]
 gi|320121457|gb|ADW17003.1| RNAse PH [Desulfobulbus propionicus DSM 2032]
          Length = 235

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 108/233 (46%), Positives = 147/233 (63%), Gaps = 3/233 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R  + +R  S+   V  +A+GS L++ G+TH+L   T+E++VP ++++   GWIT
Sbjct: 1   MRSGERSADALRPFSVEYGVQPHADGSVLIRMGNTHVLCGVTVEDRVPPFLKDKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGMLP +T +R +REAVSG   GR+ EIQR+IGR+LR +VDLS LG   + +DCDV+ 
Sbjct: 61  AEYGMLPCATHSRGRREAVSG-LSGRTHEIQRLIGRSLRMMVDLSLLGEHTLRVDCDVLN 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR A+ITG  +A+   L  M +      L       VAAIS G++ G P++DLDY 
Sbjct: 120 ADGGTRCASITGGALAVKMALARMVERGRLPALPP--LLPVAAISAGVVAGQPVLDLDYA 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           EDS+ +VDANFVM+  G  +EVQ +AE   F    F AM  LA      L  L
Sbjct: 178 EDSSAEVDANFVMSGDGRWIEVQSTAEGGPFHPQLFTAMAELAARGTGQLFGL 230


>gi|149173903|ref|ZP_01852532.1| ribonuclease PH [Planctomyces maris DSM 8797]
 gi|148847433|gb|EDL61767.1| ribonuclease PH [Planctomyces maris DSM 8797]
          Length = 246

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 112/242 (46%), Positives = 149/242 (61%), Gaps = 12/242 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK--HGW 58
           MR   RQ  Q+R I + R  +K   GS L+  GDT +L TA+L+  VP W +N +   GW
Sbjct: 1   MRHDSRQPEQLRPIKVERGYTKATPGSILISAGDTVVLCTASLDNSVPPWKKNDENPSGW 60

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +TAEY MLP ST  R +R     R  GRS EIQR+IGR+LR+V+D  ALG R I +DCDV
Sbjct: 61  VTAEYNMLPGSTSPRKQR-----RADGRSSEIQRLIGRSLRAVIDFGALGPRTITVDCDV 115

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDC-----SNKFQLSQVLKGHVAAISCGMLCGYP 173
           +QADGGTRT +ITG ++AL D +  + +         F   ++    VAA+S G++ G P
Sbjct: 116 LQADGGTRTLSITGGFLALLDTVLAIPETCELAPGEVFDPKRIFSDSVAAVSVGVVNGEP 175

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           ++DLDY EDST  VD N VMT  G  +EVQG+AE  TF++    A L LA   I  L ++
Sbjct: 176 VLDLDYVEDSTAGVDMNVVMTGGGDFIEVQGTAEGQTFNRGMLDAQLELATAGIQQLSEI 235

Query: 234 QK 235
           Q+
Sbjct: 236 QR 237


>gi|149912896|ref|ZP_01901430.1| ribonuclease PH [Roseobacter sp. AzwK-3b]
 gi|149813302|gb|EDM73128.1| ribonuclease PH [Roseobacter sp. AzwK-3b]
          Length = 210

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 111/211 (52%), Positives = 154/211 (72%), Gaps = 2/211 (0%)

Query: 29  LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
           +++ GDTH+L TA+LEE+VP +++ T  GW+TAEYGMLPRST +R++REA +G+QGGR+ 
Sbjct: 1   MIRVGDTHVLCTASLEERVPPFMKGTGLGWVTAEYGMLPRSTSSRMRREATAGKQGGRTV 60

Query: 89  EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
           EIQR+IGR+LR+ VD  ALG RQI +DCDVIQADGGTR AAITG W+AL   +  +    
Sbjct: 61  EIQRLIGRSLRAGVDRVALGERQITVDCDVIQADGGTRCAAITGGWIALRLAVNKLMKAG 120

Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
           +    S  L   VAA+SCG+  G P++DLDY EDS   VD NF+MT S  ++EVQ SAE 
Sbjct: 121 DVI--SDPLVDPVAAVSCGIYAGQPVLDLDYPEDSEAGVDGNFIMTGSKRLIEVQMSAEG 178

Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +T+S+D    +++LA+  +A+L+  QK  ++
Sbjct: 179 STYSRDQMNLLMDLAEKGVAELVAAQKAAVN 209


>gi|254434220|ref|ZP_05047728.1| ribonuclease PH [Nitrosococcus oceani AFC27]
 gi|207090553|gb|EDZ67824.1| ribonuclease PH [Nitrosococcus oceani AFC27]
          Length = 210

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 107/210 (50%), Positives = 147/210 (70%), Gaps = 2/210 (0%)

Query: 31  KFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI 90
           +FG+T ++  A++E+++P +++ T  GWITAEYGMLPRST NR+ REA  GRQGGR+ EI
Sbjct: 2   EFGNTRVICNASVEDRIPRFLKGTGRGWITAEYGMLPRSTHNRMGREAAQGRQGGRTLEI 61

Query: 91  QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK 150
           QR IGRALR+VVDL+ALG   + +DCDVIQADGGTRTAAITG++VAL D +        +
Sbjct: 62  QRFIGRALRAVVDLAALGEVTVTLDCDVIQADGGTRTAAITGSYVALVDAIN--NRLKKR 119

Query: 151 FQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERAT 210
                 + G +A+IS G+  G P++DLDY EDST + D N VM ++G  +E+QG+AE   
Sbjct: 120 IITHSPIHGQLASISVGIYEGTPVLDLDYREDSTAETDMNVVMNEAGAFIEIQGTAEGHA 179

Query: 211 FSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           F  +   AML+LAK  I  L+  Q +V++ 
Sbjct: 180 FRMNELQAMLDLAKSGINTLLAQQTEVLAK 209


>gi|269216890|ref|ZP_06160744.1| tRNA nucleotidyltransferase [Slackia exigua ATCC 700122]
 gi|269129697|gb|EEZ60781.1| tRNA nucleotidyltransferase [Slackia exigua ATCC 700122]
          Length = 246

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 110/239 (46%), Positives = 154/239 (64%), Gaps = 5/239 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+  R +  MR+++L R V K A GSCLVKFGDTH+L +AT+E++V  W + +  GW+TA
Sbjct: 11  RVDNRLDRAMRDVTLERGVMKNASGSCLVKFGDTHVLVSATIEDRVAGWRKGSGLGWLTA 70

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG-SRQIIIDCDVIQ 120
           EY MLP +   R  RE    +  GRSQEI+R+IGR+LR+V D+  +G    + IDCDV+Q
Sbjct: 71  EYAMLPAAGTKRTPRETKGRK--GRSQEIERLIGRSLRNVCDMGRMGGEVTMTIDCDVLQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+ITGAWVA  D  +           +  L G VAA+S GM+ G  ++DLDY 
Sbjct: 129 ADGGTRTASITGAWVAAWDAFEMWRMAGR--CKTNPLFGQVAAVSVGMVGGRLLLDLDYR 186

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           EDS  ++D N VM   G +VEVQG+ E+ +FS+     ML++A+  I  L++ Q+  + 
Sbjct: 187 EDSQAEIDMNVVMNGKGELVEVQGTGEQVSFSRATLNEMLDMAQAGIDGLLEKQRAAVG 245


>gi|318042724|ref|ZP_07974680.1| ribonuclease PH [Synechococcus sp. CB0101]
          Length = 244

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 96/239 (40%), Positives = 139/239 (58%), Gaps = 4/239 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  + +R          +A  S  V  G T ++ +  LEE VP W + +  GW++A
Sbjct: 7   RSDGRSPSDLRPTRFDWDPMGFALSSVTVHTGRTAVICSVCLEEDVPKWRQGSGKGWLSA 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           +Y +LP ST +R  RE +  +  GR+QEIQR+I R+LR+ +DL ALG R + IDCDV+QA
Sbjct: 67  DYRLLPASTPSRQPRELM--KLSGRTQEIQRLIARSLRACLDLEALGERSLHIDCDVLQA 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D GTR+A+ITGAW AL   L+ +E  +        +   VAA+S G++    ++DLDY E
Sbjct: 125 DAGTRSASITGAWAALALGLRRLE--ARGVLNGTPMLEQVAAVSVGLVGSQALLDLDYSE 182

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           DS  +VD N VM   G ++EVQG+AE A FS+     +L+LA + +  L   Q   +  
Sbjct: 183 DSRAEVDLNVVMNSQGQLLEVQGTAEGAPFSRQQLNQLLDLADEGLQLLRHSQLQALEQ 241


>gi|189184292|ref|YP_001938077.1| ribonuclease PH [Orientia tsutsugamushi str. Ikeda]
 gi|189181063|dbj|BAG40843.1| ribonuclease PH [Orientia tsutsugamushi str. Ikeda]
          Length = 251

 Score =  278 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 114/244 (46%), Positives = 158/244 (64%), Gaps = 7/244 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG-WI 59
           MRL  R++++MR IS+       ++GSCL+K G+TH++ +AT+EE +P++++N K G W+
Sbjct: 1   MRLCSRKDSEMRPISIELGTMLNSKGSCLIKIGNTHVICSATVEESLPLFLKNKKQGGWV 60

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           TAEY MLP S+  RVKRE + G+  GR+QEIQR+I RA+R+ VDL  LG RQI+IDCDVI
Sbjct: 61  TAEYSMLPGSSLQRVKREGIQGK-SGRTQEIQRLISRAMRAAVDLKLLGERQILIDCDVI 119

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
            ADGGTR A+ITG +VA+   +  +    N       +   VAAISCG+  G  IVDLDY
Sbjct: 120 NADGGTRAASITGGYVAMCLAVNKLMQEKNLAVY--PILYQVAAISCGISNGRVIVDLDY 177

Query: 180 GEDSTIDVDANFVMTDSG---HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            EDS  +VDANFV   +G    IVE+Q +AE+  F  +    ML LA+  I  +  +Q  
Sbjct: 178 QEDSCAEVDANFVFRRAGTIIEIVEIQVAAEKKAFVDEQVIQMLKLAQKAINHIFDIQNQ 237

Query: 237 VISN 240
            +  
Sbjct: 238 SLLK 241


>gi|223940166|ref|ZP_03632028.1| ribonuclease PH [bacterium Ellin514]
 gi|223891183|gb|EEF57682.1| ribonuclease PH [bacterium Ellin514]
          Length = 255

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 99/217 (45%), Positives = 137/217 (63%), Gaps = 4/217 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH--GW 58
           +R  GR   Q+R +     ++ YA GS LV++G+T ++   T+EE VP W++      GW
Sbjct: 17  LRTDGRLPGQLRPLRFQNHIAPYATGSTLVEWGNTRVICGVTVEESVPRWMKEQNVIGGW 76

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           ITAEY MLP ST  R +R+   G+  GRSQEIQR+IGRA+R+ +DL  +GSR I +DCDV
Sbjct: 77  ITAEYSMLPYSTLQRKQRDISKGKIDGRSQEIQRLIGRAMRAAIDLEKIGSRTIWVDCDV 136

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QADGGTRTAAITGA+VAL   ++ +            +   VAA+S G++   P++DL 
Sbjct: 137 LQADGGTRTAAITGAYVALSLAVRKLMSEGKL--KESPMLHAVAAVSVGVVNRQPLLDLC 194

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
           Y ED+   VD N VM   G  +E+QG+ E ATFS+  
Sbjct: 195 YVEDAAAAVDLNLVMNSVGEFIELQGTGEEATFSETE 231


>gi|148284140|ref|YP_001248230.1| tRNA nucleotidyltransferase [Orientia tsutsugamushi str. Boryong]
 gi|146739579|emb|CAM79326.1| tRNA nucleotidyltransferase [Orientia tsutsugamushi str. Boryong]
          Length = 251

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 114/244 (46%), Positives = 157/244 (64%), Gaps = 7/244 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG-WI 59
           MRL  R++++MR IS+       ++GSCL K G+TH++ +AT+EE +P++++N K G W+
Sbjct: 1   MRLCSRKDSEMRPISIELGAMLNSKGSCLTKIGNTHVICSATVEESLPLFLKNKKQGGWV 60

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           TAEY MLP S+  RVKRE + G+  GR+QEIQR+I RA+R+ VDL  LG RQI+IDCDVI
Sbjct: 61  TAEYSMLPGSSLQRVKREGIQGK-SGRTQEIQRLISRAMRAAVDLKLLGERQILIDCDVI 119

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
            ADGGTR A+ITG +VA+   +  +    N       +   VAAISCG+  G  IVDLDY
Sbjct: 120 NADGGTRAASITGGYVAMCLAVNKLMQEKNLAVY--PILYQVAAISCGISNGRVIVDLDY 177

Query: 180 GEDSTIDVDANFVMTDSG---HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            EDS  +VDANFV   +G    IVE+Q +AE+  F  +    ML LA+  I  +  +Q  
Sbjct: 178 QEDSCAEVDANFVFRRAGTIIEIVEIQVAAEKKAFVDEQVIQMLKLAQKAINHIFDIQNQ 237

Query: 237 VISN 240
            +  
Sbjct: 238 SLLK 241


>gi|162456258|ref|YP_001618625.1| ribonuclease PH [Sorangium cellulosum 'So ce 56']
 gi|161166840|emb|CAN98145.1| ribonuclease PH [Sorangium cellulosum 'So ce 56']
          Length = 257

 Score =  274 bits (702), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 104/240 (43%), Positives = 137/240 (57%), Gaps = 3/240 (1%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +  R + +     + AEGS L + G T +L TA++E  VP W+     GW+TA
Sbjct: 3   RPDGRALDVHRPVEMILGFHRNAEGSVLYRAGRTVVLCTASVEPTVPAWMMGKGAGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           EY M PRS+  R +     G+   GR+QEIQR+IGRALR+ +DL  LG + I IDCDV++
Sbjct: 63  EYQMHPRSSPARREPRDGRGKAPSGRTQEIQRLIGRALRAAIDLKHLGEQTIAIDCDVLE 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+IT  +VAL   L  M    +    + VL+  VAAIS G L G   +DL Y 
Sbjct: 123 ADGGTRTASITAGFVALALALDRMRAAGSL--EAPVLRDQVAAISVGHLPGGLALDLVYT 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           EDS+  VD N V T  G IVEVQ +AE     +     M +LA   +A L   Q   +S+
Sbjct: 181 EDSSARVDMNVVATAVGSIVEVQATAEDEAIPRAELDRMTDLALAGVASLASAQHRALSS 240


>gi|302338872|ref|YP_003804078.1| ribonuclease PH [Spirochaeta smaragdinae DSM 11293]
 gi|301636057|gb|ADK81484.1| ribonuclease PH [Spirochaeta smaragdinae DSM 11293]
          Length = 236

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 97/230 (42%), Positives = 146/230 (63%), Gaps = 4/230 (1%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           MR++        +  GSCL  +GDT ++ T +LE++VP ++     GW+TAEYGMLP ST
Sbjct: 1   MRDVQFQTSYLIHPAGSCLASYGDTKVICTVSLEDRVPSFLEGRGCGWLTAEYGMLPGST 60

Query: 71  GN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
           G  R +RE   G++ GRS EIQR+IGR+LR+ VD+  LG R + +DCDVIQADGGTRTA+
Sbjct: 61  GGGRKQREI--GKRDGRSTEIQRLIGRSLRASVDMEKLGERTLTVDCDVIQADGGTRTAS 118

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           ++G WVAL++ L  + +   +      LKG +AA+S G++ G  + DLDY  DS  +VD 
Sbjct: 119 VSGGWVALYEALSALAEREGRGGADYYLKGQLAAVSVGIVDGQVVCDLDYAHDSRAEVDM 178

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           N V  +    VE+QG+ E+ TFS +   +++  A + +  + + Q+D + 
Sbjct: 179 NIVKLEEA-FVELQGTGEKGTFSSEQLASLIAAADEGLTFIFQKQRDALK 227


>gi|307719046|ref|YP_003874578.1| ribonuclease PH [Spirochaeta thermophila DSM 6192]
 gi|306532771|gb|ADN02305.1| ribonuclease PH [Spirochaeta thermophila DSM 6192]
          Length = 226

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 102/229 (44%), Positives = 136/229 (59%), Gaps = 5/229 (2%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           MR +S    V  Y  GSCLV FG+T +L  A++EE VP +I     GW+TAEY MLP S 
Sbjct: 1   MRPVSFEAGVLAYPAGSCLVSFGNTKVLCAASIEEGVPPFIEQEGEGWLTAEYAMLPASV 60

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
               KR      +  R+ EIQR IGR+LR+ VD + LG   I++DCDV+QADGGTRTAAI
Sbjct: 61  PEGRKR----RERDSRAVEIQRFIGRSLRAAVDRTRLGPYTIVMDCDVLQADGGTRTAAI 116

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
           +G WVAL+  L  + +          L G VAA+S GM+ G  + DLD+  D    VD N
Sbjct: 117 SGGWVALYQALGKLAEMQGVEGPDYFLVGQVAAVSVGMVEGRLVADLDFAHDLAAQVDMN 176

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            VM D   +VEVQG+ E+ +F++D   AML+LA   I  + + Q+  + 
Sbjct: 177 VVMCDD-RLVEVQGNGEKGSFTRDELDAMLDLAAREIRIIYEAQRAALG 224


>gi|221632459|ref|YP_002521680.1| ribonuclease PH [Thermomicrobium roseum DSM 5159]
 gi|221156234|gb|ACM05361.1| ribonuclease PH [Thermomicrobium roseum DSM 5159]
          Length = 243

 Score =  273 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 111/235 (47%), Positives = 153/235 (65%), Gaps = 4/235 (1%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
           GR  +++R + +      YAEGS L+  G+TH+L  AT+EE+VP ++  +  GWITAEYG
Sbjct: 11  GRANDELRPVEIVPHYIPYAEGSALIMLGNTHVLCAATVEERVPSFLVGSGQGWITAEYG 70

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           MLPRS   R+ RE +    GGR+ EIQR+IGR+LR+ VDL+ALG R IIIDCDV++ADGG
Sbjct: 71  MLPRSGRERIPRERMG--PGGRTAEIQRLIGRSLRAAVDLAALGERTIIIDCDVLRADGG 128

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
           TRTAAITG WV     L      +     S  +   VAA+S G++ G P +DL+Y EDS 
Sbjct: 129 TRTAAITGGWV--ALHLALQHLLAEGRIESLPVVRQVAAVSVGVVAGQPRLDLEYAEDSC 186

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            +VD N VMTD G  VE+QG+AE   F ++    +L LA+  I++L+ +Q+  + 
Sbjct: 187 AEVDMNIVMTDRGEFVELQGTAEGQPFGREVLEQLLRLAERGISELMLVQRRALG 241


>gi|126730097|ref|ZP_01745909.1| ribonuclease PH [Sagittula stellata E-37]
 gi|126709477|gb|EBA08531.1| ribonuclease PH [Sagittula stellata E-37]
          Length = 206

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 103/208 (49%), Positives = 145/208 (69%), Gaps = 2/208 (0%)

Query: 32  FGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQ 91
            GDTH+L TA+LEE+VP +++ +  GW+TAEYGMLPRST +R++REA  G+QGGR+ EIQ
Sbjct: 1   MGDTHVLCTASLEERVPPFVKGSGQGWVTAEYGMLPRSTSSRMRREAAMGKQGGRTVEIQ 60

Query: 92  RMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF 151
           R+IGRALR+ VD +ALG RQI +DCDVIQADGGTR A+ITG WVAL   +  +    +  
Sbjct: 61  RLIGRALRAGVDRNALGERQITVDCDVIQADGGTRCASITGGWVALRLAVNKLMKAGDIV 120

Query: 152 QLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
             +  L   VAA+SCG+  G  ++DLDY EDS   VD NF++     ++EVQ SAE + F
Sbjct: 121 --TDPLISEVAAVSCGIYAGQAVLDLDYPEDSEAGVDGNFILRGDNALIEVQMSAEGSVF 178

Query: 212 SQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           S++    +++LA+  + +L+  Q+  + 
Sbjct: 179 SRNQMTQLMDLAEKGVVELVAAQRAAVK 206


>gi|289672870|ref|ZP_06493760.1| ribonuclease PH [Pseudomonas syringae pv. syringae FF5]
          Length = 186

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 98/184 (53%), Positives = 130/184 (70%), Gaps = 1/184 (0%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 3   RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + +DCDVIQA
Sbjct: 63  EYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTA+ITGA VAL D L  +       +    LK  +AA+S GM  G P++DLDY E
Sbjct: 123 DGGTRTASITGAMVALADAL-KVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181

Query: 182 DSTI 185
           DS  
Sbjct: 182 DSAA 185


>gi|315186954|gb|EFU20712.1| RNAse PH [Spirochaeta thermophila DSM 6578]
          Length = 223

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 98/226 (43%), Positives = 134/226 (59%), Gaps = 5/226 (2%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
           +S    V  Y  GSCLV FG+T +L  A++EE VP +I     GW+TAEY MLP S    
Sbjct: 1   MSFEVGVLAYPAGSCLVSFGNTKVLCAASIEEGVPPFIEQEGEGWLTAEYAMLPASVPEG 60

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
            KR      +  R+ EIQR IGR+LR+ +D + LG   I+IDCDV+QADGGTRTAAI+G 
Sbjct: 61  RKR----RERDSRAVEIQRFIGRSLRAALDRTRLGPYTIVIDCDVLQADGGTRTAAISGG 116

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
           WVAL+  L+ + +          L G VAA+S G++ G  + DLD+  D    VD N VM
Sbjct: 117 WVALYQALEKLAELHGVEGPEYFLAGQVAAVSVGIVEGQLVADLDFAHDLAAQVDMNVVM 176

Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            D   +VEVQG+ E+  F+++   AML+LA   I  + + Q+  + 
Sbjct: 177 CDD-RLVEVQGNGEKGAFTREELDAMLDLAAQEIGLIYEAQRAALG 221


>gi|87125085|ref|ZP_01080932.1| ribonuclease PH [Synechococcus sp. RS9917]
 gi|86167405|gb|EAQ68665.1| ribonuclease PH [Synechococcus sp. RS9917]
          Length = 220

 Score =  264 bits (675), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 96/221 (43%), Positives = 139/221 (62%), Gaps = 4/221 (1%)

Query: 21  SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80
             +A  S LV+ G T +L +   E  VP W   +  GW++AEY +LP ST  R KRE + 
Sbjct: 1   MGFALSSVLVRSGRTAVLCSIGHEAGVPRWRMGSGKGWLSAEYRLLPGSTPERQKRELL- 59

Query: 81  GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDC 140
            +  GR+QEIQR+IGR+LR+ +D+ ALG   +++DCDVIQAD GTRTAAITGAWVAL   
Sbjct: 60  -KLSGRTQEIQRLIGRSLRACLDMEALGENTLLVDCDVIQADAGTRTAAITGAWVALQRA 118

Query: 141 LQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIV 200
            + +    +       ++  VAA+S G++ G  ++DL+Y EDS  DVD N VM  SG ++
Sbjct: 119 CERLVKRGDL--SHNPVRDQVAAVSVGLIGGEALLDLNYSEDSQADVDLNVVMDGSGRLL 176

Query: 201 EVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           E+QG+AE A FS+     +L+LA+  +  L+  Q+  ++ E
Sbjct: 177 ELQGTAEGAPFSRSELTRLLDLAEPGLTALMAAQQRALAPE 217


>gi|149924421|ref|ZP_01912786.1| ribonuclease PH [Plesiocystis pacifica SIR-1]
 gi|149814728|gb|EDM74302.1| ribonuclease PH [Plesiocystis pacifica SIR-1]
          Length = 248

 Score =  261 bits (667), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 103/254 (40%), Positives = 147/254 (57%), Gaps = 23/254 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR  +Q+R ++LT   +  A+GS L+  G T +L TA++E + P W+  +  GW+T
Sbjct: 1   MRFDGRSNDQLRPLTLTPGFTSAADGSVLIATGGTRVLCTASVESRTPSWL--SSGGWVT 58

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL----GSRQIIIDC 116
           AEY MLP +T  R  R     +  GR++EIQR+IGR+LR+ VDLS L    G   I+ DC
Sbjct: 59  AEYAMLPGATRPRGGR-----KANGRAKEIQRLIGRSLRAAVDLSKLVGPDGGVSIVCDC 113

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-----CG 171
           DVI+ADGGTRTAAITGAWVAL   L+ +   +            VAA+S G++       
Sbjct: 114 DVIEADGGTRTAAITGAWVALELALRRL--VAGGKLSEHPGIAPVAAVSVGVIPVEGSEP 171

Query: 172 YPIVDLDYGEDSTIDVDANFVM-----TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             ++DL Y EDS   VD N VM       +  +VE+QG+ E+  FS++    ML+LA+  
Sbjct: 172 EVMLDLPYSEDSRAIVDLNVVMRRAPEGGTPRLVEIQGTGEQGDFSREQLNRMLDLAEGG 231

Query: 227 IADLIKLQKDVISN 240
           I +L+  Q+  +  
Sbjct: 232 ITNLLAGQQAALRE 245


>gi|116754659|ref|YP_843777.1| exosome complex exonuclease Rrp41 [Methanosaeta thermophila PT]
 gi|116666110|gb|ABK15137.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosaeta
           thermophila PT]
          Length = 245

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 104/239 (43%), Gaps = 22/239 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +RL GR+ +++R I +   V K A+GSC ++ GD  ++       +V P  ++      I
Sbjct: 11  IRLDGRRFDELRPIKMEVGVLKRADGSCYMEMGDNKVIAAVYGPREVHPRHLQEVNRAII 70

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M   S   R +          RS E+ ++   AL  V+  S      I I  +V+
Sbjct: 71  RYRYNMASFSVEERRR-----PGPDRRSYELSKVSREALEPVILTSYFPKSVIDIFVEVL 125

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QAD GTRTA I  A VAL D    M                V++ + G + G  ++D   
Sbjct: 126 QADAGTRTAGINAASVALADAGIPMRSL-------------VSSCAAGKVDGQIVLDPMK 172

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED+    D    +T +G I  +Q        ++D F   + LAK    ++ K+Q+ V+
Sbjct: 173 DEDNFGQADMPIAITPTGEITLLQMDG---ILTRDEFRQAMELAKKGCQEIYKIQRRVL 228


>gi|282165297|ref|YP_003357682.1| putative exosome complex exonuclease 1 [Methanocella paludicola
           SANAE]
 gi|282157611|dbj|BAI62699.1| putative exosome complex exonuclease 1 [Methanocella paludicola
           SANAE]
          Length = 254

 Score =  255 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 102/241 (42%), Gaps = 22/241 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           RL GR  N++R I     V K A+GSC ++FG   ++       +V P  ++N     + 
Sbjct: 13  RLDGRGPNELRPIKFKAGVLKRADGSCYLEFGGNKVMAAVYGPREVHPRHLQNASRAIVR 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M   S   R KR         RS EI ++   AL SVV         + I  +++Q
Sbjct: 73  YRYNMAAFSVEER-KRPG----PDRRSIEISKVSREALESVVLEELYPRSAVDIFVEILQ 127

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A I  A VAL D    M             +  V+A S G + G  ++DL+  
Sbjct: 128 ADAGTRVAGINAASVALADAGIPM-------------RCLVSACSVGKIDGEVVLDLNKD 174

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED+    D    +   G +   Q        +++ F   L++A D    L ++QK  +  
Sbjct: 175 EDNYGQADLPVAVNQFGEVTLCQMDGH---LTEEEFGKALDMAVDGCKKLHEMQKQALVE 231

Query: 241 E 241
           +
Sbjct: 232 K 232


>gi|294495471|ref|YP_003541964.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus
           mahii DSM 5219]
 gi|292666470|gb|ADE36319.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus
           mahii DSM 5219]
          Length = 297

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 106/239 (44%), Gaps = 22/239 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           +RL GR+ +++R + +   V   A+GSC +++G+  +L       +  P  ++      +
Sbjct: 14  LRLDGRRVDEIRPMKVEMGVLSRADGSCYLEWGNNKVLAAVYGPRELHPRRMQKPNEVLV 73

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y M   S  +R++          RS EI ++ G A   VV         I +  +V+
Sbjct: 74  RYKYNMASFSVEDRIR-----PGPSRRSTEISKVSGEAFEPVVMTQYYPGAVIDVFAEVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QAD GTRTAAI  A +AL D    M             KG V+A + G + G  ++DL+ 
Sbjct: 129 QADAGTRTAAINAATLALADAGIPM-------------KGLVSACAVGKVDGQLVLDLNK 175

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED+    D    MT  G I  +Q        + +     L + K     +I++Q++ +
Sbjct: 176 PEDNYGQADLPVAMTQDGEITLLQMDGH---LTPEELEEGLEMVKKGCQQIIEIQREAL 231


>gi|297527572|ref|YP_003669596.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM
           12710]
 gi|297256488|gb|ADI32697.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM
           12710]
          Length = 240

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 106/242 (43%), Gaps = 21/242 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +R  GR+ +++R I +   V K A+GS  V++G T ++       +V P  +       I
Sbjct: 12  LRHDGRRPDELRPIKMDVGVLKNADGSAYVEYGGTKIIAAVYGPREVYPRHLALPDRALI 71

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P ST +R      S     R  E+ ++I  AL S+V         I +  +V+
Sbjct: 72  RCRYHMAPFSTSDRK-----SPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVL 126

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTRT  +T A +AL D    M D              VA ++ G + G  ++D+D 
Sbjct: 127 QADGGTRTTGLTAASLALADAGIPMRDL-------------VAGVAAGKVDGVLVLDIDE 173

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED   + D       +  I E+        F+ + F   LNLAK     + K+ K+ + 
Sbjct: 174 VEDEYGEADMPI--GYAAGIDEIVLLQLNGVFTVEEFKEALNLAKRGAEQIYKIMKETLH 231

Query: 240 NE 241
            +
Sbjct: 232 KK 233


>gi|315229927|ref|YP_004070363.1| exosome complex exonuclease 1 [Thermococcus barophilus MP]
 gi|315182955|gb|ADT83140.1| exosome complex exonuclease 1 [Thermococcus barophilus MP]
          Length = 246

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 23/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           R+ GR++ ++R I +   V K A+GS  +++G   +L       ++ P  ++      + 
Sbjct: 16  RIDGRKKYELRPIKMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDRAILR 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S   R K          RS EI ++I  AL   + L       I +  +V+Q
Sbjct: 76  VRYNMAPFSVEERKK-----PGPDRRSVEISKVIRGALEPAIILELFPRTAIDVFIEVLQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A IT A +AL D    M+D              V+A + G + G  ++DL+  
Sbjct: 131 ADAGTRVAGITAASLALADAGIPMKDL-------------VSACAAGKIEGQIVLDLNKE 177

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  + D    +M     I  +Q        +++ F   + LA      + + Q++ + 
Sbjct: 178 EDNYGEADVPVAIMPIKNDITLLQMDG---YLTREEFLEAVRLAIKGAKAVYQKQREALK 234

Query: 240 NE 241
            +
Sbjct: 235 EK 236


>gi|57641569|ref|YP_184047.1| exosome complex exonuclease Rrp41 [Thermococcus kodakarensis KOD1]
 gi|73919276|sp|Q5JIR6|ECX1_PYRKO RecName: Full=Probable exosome complex exonuclease 1
 gi|57159893|dbj|BAD85823.1| exosome subunit Rrp41p homolog, 3'-5' exoribonuclease [Thermococcus
           kodakarensis KOD1]
          Length = 249

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 23/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           R+ GR++ ++R I +   V K A+GS  V++G   +L       ++ P  ++      + 
Sbjct: 17  RIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIHPKHLQRPDRAILR 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S   R K          RS EI ++I  AL   + L       I +  +++Q
Sbjct: 77  VRYNMAPFSVEERKK-----PGPDRRSVEISKVIRGALEPALLLHMFPRTAIDVFIEILQ 131

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A IT A +AL D    M+D              VAA + G + G  ++DL+  
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMKDL-------------VAACAAGKIDGEIVLDLNKE 178

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  + D    +M     I  +Q        ++D F   + LA      + + Q++ + 
Sbjct: 179 EDNYGEADVPVAIMPLKNDITLLQMDG---YLTKDEFLEAVRLAIKGAKAVYQKQREALK 235

Query: 240 NE 241
            +
Sbjct: 236 EK 237


>gi|147919675|ref|YP_686581.1| putative exosome complex exonuclease 1 [uncultured methanogenic
           archaeon RC-I]
 gi|110621977|emb|CAJ37255.1| putative exosome complex exonuclease 1 [uncultured methanogenic
           archaeon RC-I]
          Length = 253

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 97/241 (40%), Gaps = 22/241 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           RL GR    +R I     V K A+GSC ++FG   ++       +V P  ++   +  + 
Sbjct: 13  RLDGRGPFDLRPIKFQAGVLKRADGSCYLEFGGNKVMAAVYGPREVHPRHLQQASNAIVR 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M   S   R KR         RS EI ++   AL SV+         I I  +++Q
Sbjct: 73  YRYNMASFSVEER-KRPG----PDRRSIEISKVSREALESVILKELYPRSAIDIFVEILQ 127

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A I  A VAL D    M             K  V+A + G      ++DL+  
Sbjct: 128 ADAGTRVAGINAASVALADAGIPM-------------KCLVSACAVGKADDTLVLDLNKD 174

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED+    D    M   G I   Q        + D F   LN+A +    L +LQK  +  
Sbjct: 175 EDNYGQADLPIAMNQFGEITLCQMDGH---MTSDEFSTALNMAIEGCKKLHELQKQALVE 231

Query: 241 E 241
           +
Sbjct: 232 K 232


>gi|126465758|ref|YP_001040867.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus
           marinus F1]
 gi|126014581|gb|ABN69959.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus
           marinus F1]
          Length = 240

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 104/242 (42%), Gaps = 21/242 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +R  GR+ N++R I +   V K A+GS  V++G T ++       +V P  +       I
Sbjct: 12  LRHDGRKPNELRPIKMDVGVLKNADGSAYVEYGGTKVIAAVYGPREVYPRHLALPDRALI 71

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P ST +R      S     R  E+ ++I  AL S+V         I +  +V+
Sbjct: 72  RCRYHMAPFSTSDRK-----SPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVL 126

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTRT  +T A +AL D    M D              VA ++ G + G  ++D+D 
Sbjct: 127 QADGGTRTTGLTAASLALADAGIPMRDL-------------VAGVAVGKVDGVLVLDIDE 173

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED   + D       +  I E+         + + F   LNLAK     + K  K+ + 
Sbjct: 174 VEDEYGEADMPI--GYAAGIDEIVLLQLNGVLTVEEFREALNLAKWGAEQIYKTMKETLH 231

Query: 240 NE 241
            +
Sbjct: 232 KK 233


>gi|18977940|ref|NP_579297.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus DSM 3638]
 gi|29336822|sp|Q8U0L9|ECX1_PYRFU RecName: Full=Probable exosome complex exonuclease 1
 gi|18893710|gb|AAL81692.1| ribonuclease ph (rph) [Pyrococcus furiosus DSM 3638]
          Length = 250

 Score =  251 bits (641), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 102/242 (42%), Gaps = 23/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           RL GR++ ++R I +   V K A GS  +++G   ++       ++ P  ++      + 
Sbjct: 17  RLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIHPKHLQRPDRAILR 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S   R K          RS EI ++I  AL   + L       I +  +V+Q
Sbjct: 77  VRYNMAPFSVEERKK-----PGPDRRSIEISKVIRGALEPALILEMFPRTAIDVFIEVLQ 131

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A IT A +AL D    M D              VAA S G + G  ++DL+  
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDL-------------VAACSAGKIEGEIVLDLNKE 178

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  + D    +M     I  +Q        +++ F   + LA      + + Q++ + 
Sbjct: 179 EDNYGEADVPVAIMPIKNDITLLQMDG---YLTKEEFIEAVKLAIKGAKAVYQKQREALK 235

Query: 240 NE 241
            +
Sbjct: 236 EK 237


>gi|212223175|ref|YP_002306411.1| exosome complex exonuclease Rrp41 [Thermococcus onnurineus NA1]
 gi|226740341|sp|B6YSI2|ECX1_THEON RecName: Full=Probable exosome complex exonuclease 1
 gi|212008132|gb|ACJ15514.1| 3'-5' exoribonuclease [Thermococcus onnurineus NA1]
          Length = 249

 Score =  251 bits (641), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 103/242 (42%), Gaps = 23/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           R+ GR++ ++R I +   V K A+GS  V++G   +L       ++ P  ++      + 
Sbjct: 17  RIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRAILR 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S   R K          RS EI ++I  AL   + L       I I  +V+Q
Sbjct: 77  VRYNMAPFSVEERKK-----PGPDRRSVEISKVIRGALEPALILEMFPRTAIDIFIEVLQ 131

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A IT A +AL D    M D              VAA + G + G  ++DL+  
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDL-------------VAACAAGKIEGEIVLDLNKE 178

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  + D    +M     I  +Q        ++D F   + LA      + + Q++ + 
Sbjct: 179 EDNYGEADVPVAIMPLKNDITLLQMDG---YLTRDEFIEAVRLAIKGAKAVYQKQREALK 235

Query: 240 NE 241
            +
Sbjct: 236 EK 237


>gi|297622726|ref|YP_003704160.1| ribonuclease PH [Truepera radiovictrix DSM 17093]
 gi|297163906|gb|ADI13617.1| ribonuclease PH [Truepera radiovictrix DSM 17093]
          Length = 236

 Score =  250 bits (640), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 99/237 (41%), Positives = 138/237 (58%), Gaps = 7/237 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK--HGW 58
           MR  GRQ  Q+REI +T   +++AEGS LV++GDT +L T T+E K+P  +R  K   GW
Sbjct: 1   MRK-GRQPFQLREIRVTPGYNRFAEGSALVEWGDTRVLATVTVENKLPPHLRGKKGRVGW 59

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +TAEY MLPRST  R +RE +    GGRS EIQR+IGR+LRSV DL+    + + +D DV
Sbjct: 60  LTAEYAMLPRSTAERTQRERLYA--GGRSLEIQRLIGRSLRSVTDLTLFHGQTLTVDVDV 117

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QADGGTR A I   + ALH     +            L   VAA+S G++ G  ++DLD
Sbjct: 118 LQADGGTRCAGILAGYAALHHAAGRLVR--KGALDEWPLTHEVAAVSVGVVRGETLLDLD 175

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           + ED+  ++D N V T  G +VEVQGS E        +  ++      +  L+   +
Sbjct: 176 FHEDAAAEIDLNVVATADGKLVEVQGSGEERPIDAGRYVELVAQGISAVQGLLAHVR 232


>gi|242399326|ref|YP_002994750.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM
           739]
 gi|242265719|gb|ACS90401.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM
           739]
          Length = 246

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 23/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           R+ GR++ ++R+I +   V K A+GS  V++G   ++       ++ P  ++      + 
Sbjct: 16  RVDGRKKYELRKIKMEVGVLKSADGSAYVEWGKNKIMAAVYGPREIHPKHLQKPDRAILR 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S   R K          RS EI ++I  AL   V L       I I  +V+Q
Sbjct: 76  VRYNMAPFSVEERKK-----PGPDRRSVEISKVIRGALEPAVILELFPRTSIDIFIEVLQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A IT A +AL D    M+D              VAA + G + G  ++DL+  
Sbjct: 131 ADAGTRVAGITAASLALADAGIPMKDL-------------VAACAAGKIDGEIVLDLNKE 177

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  + D    +M     I  +Q        +++ F   + LA      + + Q++ + 
Sbjct: 178 EDNYGEADVPVAIMPIKNDITLLQMDG---YLTKEEFLEAVKLAIKGAKAVYQKQREALR 234

Query: 240 NE 241
            +
Sbjct: 235 EK 236


>gi|14520826|ref|NP_126301.1| exosome complex exonuclease Rrp41 [Pyrococcus abyssi GE5]
 gi|29337010|sp|Q9V119|ECX1_PYRAB RecName: Full=Probable exosome complex exonuclease 1
 gi|170292234|pdb|2PNZ|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With Udp And Gmp
 gi|170292236|pdb|2PO0|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With Adp In Double Conformation
 gi|170292239|pdb|2PO1|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With A Single Stranded 10-Mer Poly(A) Rna
 gi|170292241|pdb|2PO2|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With Cdp
 gi|5458042|emb|CAB49532.1| rph ribonuclease PH, exosome complex exonuclease [Pyrococcus abyssi
           GE5]
          Length = 249

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 101/242 (41%), Gaps = 23/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60
           R+ GR++ ++R I +   V K A GS  +++G   ++       +  P  ++      + 
Sbjct: 17  RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILR 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S   R K          RS EI ++I  AL   + L       I +  +V+Q
Sbjct: 77  VRYNMAPFSVEERKK-----PGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQ 131

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A IT A +AL D    M D              VAA + G + G  ++DL+  
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDL-------------VAACAAGKIEGEIVLDLNKE 178

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  + D    +M     I  +Q        ++D F   + LA      + + Q++ + 
Sbjct: 179 EDNYGEADVPVAIMPLKNDITLLQMDG---YLTKDEFIEAVKLAIKGAKAVYQKQREALK 235

Query: 240 NE 241
            +
Sbjct: 236 EK 237


>gi|332157779|ref|YP_004423058.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2]
 gi|331033242|gb|AEC51054.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2]
          Length = 249

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 23/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60
           R+ GR++ ++R I +   V K A+GS  +++G   ++      ++  P  ++      + 
Sbjct: 17  RIDGRKKYELRPIKMEVGVLKNADGSAYIEWGKNKIIAAVYGPKELHPKHLQRPDRAILR 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S   R K          RS EI ++I  AL   + L       I +  +V+Q
Sbjct: 77  VRYNMAPFSVEERKK-----PGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQ 131

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A IT A +AL D    M D              VAA + G + G  ++DL+  
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDL-------------VAACAAGKIEGEIVLDLNKE 178

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  + D    +M     I  +Q        +++ F   + LA      + + Q++ + 
Sbjct: 179 EDNYGEADVPVAIMPLRNDITLLQMDG---YLTKEEFIEAVKLAIKGAKAVYQKQREALK 235

Query: 240 NE 241
           ++
Sbjct: 236 DK 237


>gi|291295492|ref|YP_003506890.1| ribonuclease PH [Meiothermus ruber DSM 1279]
 gi|290470451|gb|ADD27870.1| ribonuclease PH [Meiothermus ruber DSM 1279]
          Length = 238

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 131/242 (54%), Gaps = 7/242 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   ++R ++L      YAEGS LV+ G T +L   +L + VP  +   + GW+ A
Sbjct: 3   RKDGRAAQELRPLTLRMGYVHYAEGSALVELGHTKVLVNVSLTDGVPRHVSGRE-GWLMA 61

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LPRST  R +RE    +  GR+ EIQR +GRA R+ +DLS L ++ ++ID DVIQA
Sbjct: 62  EYNLLPRSTKERKERE--RQKISGRTAEIQRFLGRAFRAALDLSLLPNKTVVIDADVIQA 119

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYG 180
           DGGTR A++ G + ALH  +  + +     +L +      AA+S G +     ++DL   
Sbjct: 120 DGGTRVASLLGGYAALHMAMDRLVNQG---KLDEWPLTEFAAVSVGWMSDDSLLLDLTQI 176

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED     D   V T SG I+E+ G+ E     +  + AML +    I +L++     + N
Sbjct: 177 EDENAWADLTVVATQSGDIIELHGAGEGRPVPRSTYQAMLEMGLAHIPELVRRVHAQLKN 236

Query: 241 EV 242
            V
Sbjct: 237 RV 238


>gi|21228725|ref|NP_634647.1| exosome complex exonuclease 1 [Methanosarcina mazei Go1]
 gi|29336795|sp|Q8PTT8|ECX1_METMA RecName: Full=Probable exosome complex exonuclease 1
 gi|20907234|gb|AAM32319.1| Ribonuclease [Methanosarcina mazei Go1]
          Length = 493

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 102/242 (42%), Gaps = 22/242 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           +RL GR+ +++R + +   V   A+GSC +++G   +L       +  P   +      I
Sbjct: 16  LRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRSQRADSAVI 75

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M   S  +R            RS EI ++   A   V+         I I  +V+
Sbjct: 76  RYRYNMASFSVEDR-----ARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEVL 130

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QAD GTRTAAI  + +AL D    M             KG + + + G + G  ++DL+ 
Sbjct: 131 QADAGTRTAAINASSIALADAGIPM-------------KGLITSCAFGKVDGKIVLDLNK 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED+  + D    MT  G I  +Q        + D     L L K    +++++Q+ V+ 
Sbjct: 178 EEDNYGEADFPVAMTQDGEITLIQMDG---NLTPDEIKQGLELVKKGCKEILEIQQAVLR 234

Query: 240 NE 241
            +
Sbjct: 235 KK 236


>gi|124027456|ref|YP_001012776.1| ribonuclease PH [Hyperthermus butylicus DSM 5456]
 gi|254782534|sp|A2BKC0|ECX1_HYPBU RecName: Full=Probable exosome complex exonuclease 1
 gi|123978150|gb|ABM80431.1| ribonuclease PH [Hyperthermus butylicus DSM 5456]
          Length = 255

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 107/243 (44%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           +R  GR   Q+R I +   V   A+GS LV++G T ++       +  P  +       I
Sbjct: 24  IRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAII 83

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P ST  R      +     R  E+ ++I  AL +VV         I +  +V+
Sbjct: 84  RCRYHMAPFSTAERK-----TPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVL 138

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           Q+DGGTRTAAIT A +AL D    M D              VA ++ G + G  ++D+D 
Sbjct: 139 QSDGGTRTAAITAASLALADAGIAMRDL-------------VAGVAVGKVDGVLVLDIDE 185

Query: 180 GEDSTIDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED+  + D    M  S   ++ +Q +      + D F   L LA+  I  +  LQK+ +
Sbjct: 186 IEDNYAEADMPVAMAPSLDKVLLLQLNG---VLTHDEFVKALELARKGIQVIYNLQKEAL 242

Query: 239 SNE 241
             +
Sbjct: 243 RKK 245


>gi|169829487|ref|YP_001699645.1| ribonuclease PH [Lysinibacillus sphaericus C3-41]
 gi|168993975|gb|ACA41515.1| Ribonuclease PH [Lysinibacillus sphaericus C3-41]
          Length = 196

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 88/190 (46%), Positives = 120/190 (63%), Gaps = 3/190 (1%)

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
                WITAEY MLPR+T  R  RE+  G+  GR+ EIQR+IGRALR+VVDL ALG R +
Sbjct: 2   GKGKDWITAEYSMLPRATAQRTPRESSRGKVNGRTMEIQRLIGRALRAVVDLEALGERTV 61

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            IDCDVIQADGGTRTA+ITGA+VA+   +    +     +    +   +AA S G++   
Sbjct: 62  WIDCDVIQADGGTRTASITGAFVAMTQAIAKFAEEKPFVKF--PVTDFLAATSVGIVEEQ 119

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             ++DL+Y ED    VD N VMT +G  VE+QG+ E ATFS++    +L L +  I  L+
Sbjct: 120 GAVLDLNYVEDVAAAVDMNIVMTGAGRFVELQGTGEEATFSREELNELLALGEKGIQQLV 179

Query: 232 KLQKDVISNE 241
           +LQK  ++ +
Sbjct: 180 ELQKTALAEQ 189


>gi|20093819|ref|NP_613666.1| exosome complex exonuclease Rrp41 [Methanopyrus kandleri AV19]
 gi|29336819|sp|Q8TYC1|ECX1_METKA RecName: Full=Probable exosome complex exonuclease 1
 gi|19886742|gb|AAM01596.1| Predicted exosome subunit, RNase PH [Methanopyrus kandleri AV19]
          Length = 239

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 98/243 (40%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           +RL GR+ ++MR + +   V K A+GS  ++ G   ++       +  P   +      +
Sbjct: 14  LRLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQKPDRAVV 73

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P S   R KR         RS EI ++   AL   +         I I  +V+
Sbjct: 74  RFRYNMAPFSVDER-KRPG----PDRRSIEISKLSKEALEPAIFTEYYPRTAIDIFVEVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QAD GTR A I+ A VAL D    M D              VAA + G + G  ++D  Y
Sbjct: 129 QADAGTRCAGISAASVALADAGIEMRDL-------------VAACAAGKVEGKVVLDPMY 175

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED   + D    +M   G I  +Q   +    +   F   + LAK     + K Q+  +
Sbjct: 176 YEDGYGEADVPLAMMPKEGKITLLQMDGD---MTPGEFKQAVKLAKKGCKIVYKEQRRAL 232

Query: 239 SNE 241
             +
Sbjct: 233 KEK 235


>gi|167044510|gb|ABZ09185.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           crenarchaeote HF4000_APKG6J21]
          Length = 245

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 101/243 (41%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +R  GR+ N+ R++++   V K A+GS  ++FG   +L        V P  + N   G +
Sbjct: 16  IRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGIL 75

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P S   R      +     R  EI +++  AL   V L       I +  +V+
Sbjct: 76  RVRYHMAPFSVSERK-----NPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVL 130

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTR AA+  A VAL D    M D              V + + G +    I+D++ 
Sbjct: 131 QADGGTRCAALDAASVALADAGIPMRD-------------MVCSCAAGKVADALILDVNN 177

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED     D     M + G I  +Q        + D F   + L  +    + ++QK+ +
Sbjct: 178 EEDQAGQADMPIGYMPNFGKITLLQLDG---VLTTDEFKKCIELGIEGCKQVYEIQKNAL 234

Query: 239 SNE 241
             +
Sbjct: 235 REK 237


>gi|330952125|gb|EGH52385.1| ribonuclease PH [Pseudomonas syringae Cit 7]
          Length = 186

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 95/187 (50%), Positives = 127/187 (67%), Gaps = 1/187 (0%)

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
              G +TAEYGMLPR+TG R +REA  G+QGGR+ EIQR+IGR+LR+ +D+S LG   + 
Sbjct: 1   RGRGGLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLY 60

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +DCDVIQADGGTRTA+ITGA VAL D L  +       +    LK  +AA+S GM  G P
Sbjct: 61  VDCDVIQADGGTRTASITGAMVALADAL-KVIKKRGGLKGGDPLKQMIAAVSVGMYQGEP 119

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           ++DLDY EDS  + D N VMT +G  +EVQG+AE A F  +   AML LA+  + +L +L
Sbjct: 120 VLDLDYLEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEL 179

Query: 234 QKDVISN 240
           Q+  +++
Sbjct: 180 QRAALAD 186


>gi|15920655|ref|NP_376324.1| exosome complex exonuclease Rrp41 [Sulfolobus tokodaii str. 7]
 gi|29336896|sp|Q975G8|ECX1_SULTO RecName: Full=Probable exosome complex exonuclease 1
 gi|15621438|dbj|BAB65433.1| 247aa long hypothetical ribonuclease PH [Sulfolobus tokodaii str.
           7]
          Length = 247

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 21/242 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWI 59
           +RL GR+ ++MR I +   V K A+GS + + G+T ++       E  P  +       +
Sbjct: 19  LRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAVL 78

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P ST  R      +     R  E+ ++I  AL S + +       I +  +V+
Sbjct: 79  RVRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVL 133

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QAD GTR  ++  A +AL D    M D              +A ++ G   G  ++DL+ 
Sbjct: 134 QADAGTRLVSLMAASMALADAGIPMRDL-------------IAGVAVGKADGVLVLDLNE 180

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED   + D    M  S    +V         +   F   L +A+  I  +  L+K+ I 
Sbjct: 181 PEDMWGEADMPVAMMPSLK--QVALLQLNGNMTPQEFRQALEMAQKGIETIYNLEKEAIR 238

Query: 240 NE 241
           ++
Sbjct: 239 SK 240


>gi|167044148|gb|ABZ08830.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           crenarchaeote HF4000_APKG5E24]
          Length = 245

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 100/243 (41%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +R  GR+ N+ R++++   V K A+GS  ++FG   +L        V P  + N   G +
Sbjct: 16  IRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGIL 75

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P S   R      +     R  EI +++  AL   V L       I +  +V+
Sbjct: 76  RVRYHMEPFSVSERK-----NPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVL 130

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTR AA+  A VAL D    M D              V + + G      I+D++ 
Sbjct: 131 QADGGTRCAALDAASVALADAGIPMRD-------------MVCSCAAGKAADTLILDVNN 177

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED     D     M + G I  +Q        + D F   + L  +    + ++QK+ +
Sbjct: 178 EEDQAGQADMPIGYMPNFGKITLLQLDG---VLTTDEFKKCIELGIEGCKQVYEIQKNAL 234

Query: 239 SNE 241
             +
Sbjct: 235 REK 237


>gi|290989317|ref|XP_002677284.1| predicted protein [Naegleria gruberi]
 gi|284090891|gb|EFC44540.1| predicted protein [Naegleria gruberi]
          Length = 248

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 102/243 (41%), Gaps = 22/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59
           +R+ GR+ +++R I     +   A+GS   + G+T +L       +V    +       I
Sbjct: 13  LRVDGRRSHEIRNIKFKLNLFSRADGSAYYEQGNTRVLAAVYGPREVKNKSQMKNDRAII 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             EY M   STG R KR+    ++  RS EI  +I +   SV+        QI I   V+
Sbjct: 73  NCEYSMATFSTGER-KRQF---KKDRRSTEISVVIRQTFESVILTHLYPRTQIDIFMQVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTR A I  A +AL D    M             K  V + + G + G P+ DL+Y
Sbjct: 129 QADGGTRCACINAATLALLDAGIPM-------------KDFVVSCAAGFIQGSPLTDLNY 175

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED     D     +     +  +Q  ++    S D F  +L  A +    + K+  + +
Sbjct: 176 IEDCAGGPDVPIALLPKHDKVTLLQMDSK---LSLDQFEKVLEHAIEGCKQIHKVIDEQL 232

Query: 239 SNE 241
              
Sbjct: 233 KKH 235


>gi|297565611|ref|YP_003684583.1| ribonuclease PH [Meiothermus silvanus DSM 9946]
 gi|296850060|gb|ADH63075.1| ribonuclease PH [Meiothermus silvanus DSM 9946]
          Length = 235

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 90/239 (37%), Positives = 127/239 (53%), Gaps = 7/239 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   +MR +S+    + YAEGS LV+ G T +L T +L + VP  +R  + GW+  
Sbjct: 3   RKDGRAPLEMRPLSIHTGYNLYAEGSALVELGHTKVLVTVSLTDGVPRHVR-PREGWLMT 61

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LPRST  R +RE    +  GR+ EIQR +GRA R+V+DLS+L  + ++ID DV+QA
Sbjct: 62  EYNLLPRSTKERKERE--RQKLSGRTAEIQRFMGRAFRAVLDLSSLPGKTVVIDADVLQA 119

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYG 180
           DGGTR A++ G + ALH  L  M        L +      AAIS G       ++DL + 
Sbjct: 120 DGGTRVASLIGGYAALHQALDKMVRSG---ALDEWPLQEFAAISLGWFGEERILLDLTHV 176

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED     D   V T  G ++EV G  E     Q  +  ML      I +L++     +S
Sbjct: 177 EDENAWADLTVVATQGGEVIEVHGGGEGRAVPQPVYKQMLETGLGFIPELVRRIHQALS 235


>gi|320104936|ref|YP_004180527.1| RNAse PH [Isosphaera pallida ATCC 43644]
 gi|319752218|gb|ADV63978.1| RNAse PH [Isosphaera pallida ATCC 43644]
          Length = 240

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 105/239 (43%), Positives = 141/239 (58%), Gaps = 8/239 (3%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR   ++R +   R  +  + GS LV+ G T +L TA L ++VP ++     GW+T
Sbjct: 2   MRHDGRTPQEIRPVRFERGFAAASAGSVLVRSGSTVILVTANLVDQVPPFLEGRGTGWLT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLP ST +R  R     +  GR  EIQR+IGR+LR++VDL  LG R + +D DVIQ
Sbjct: 62  AEYAMLPGSTPSRKPR-----KVDGRCTEIQRLIGRSLRAMVDLERLGPRTLHLDADVIQ 116

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAIT A VA  D L     C    +   +LKG +AA+S G++ G  ++DLDY 
Sbjct: 117 ADGGTRTAAITAACVATADALNK---CLGAEEARAILKGRLAAVSVGVVDGVGLLDLDYS 173

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED   +VD N V      +VEVQG+AE A F +     +L+LA   I  L+ LQ D + 
Sbjct: 174 EDVRAEVDLNVVRLGPRGLVEVQGTAEGAPFDRRRLEELLDLADQGIDRLMALQLDAVG 232


>gi|146302862|ref|YP_001190178.1| exosome complex exonuclease Rrp41 [Metallosphaera sedula DSM 5348]
 gi|145701112|gb|ABP94254.1| ribosomal RNA-processing protein RRP41/SKI6 [Metallosphaera sedula
           DSM 5348]
          Length = 245

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 107/242 (44%), Gaps = 23/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60
           RL GR+ +++R + +   V K A+GS LV+ G+T ++       +  P  +       + 
Sbjct: 16  RLDGRRPDELRPMKMEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRATLR 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST  R      S     R  E+ ++I  AL S + +       I +  +VIQ
Sbjct: 76  VRYHMTPFSTDERK-----SPVPSRREIELSKVIREALESSILVEQFPRSSIDVFMEVIQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A++  A +A+ D                 +K  +AA++ G   G  ++DL+  
Sbjct: 131 ADAGTRLASLMAASLAVVDAGI-------------PVKDVIAAVAVGKADGVVVLDLNEP 177

Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED   + D    M    G I  +Q +      +Q  F   L LA   I+ +  L+K+V+ 
Sbjct: 178 EDMWGEADMPVAMLPSLGQITLIQLNG---NMTQQEFKQGLELAYKGISTIYNLEKEVLR 234

Query: 240 NE 241
           N+
Sbjct: 235 NK 236


>gi|254172979|ref|ZP_04879653.1| exosome complex exonuclease 1 [Thermococcus sp. AM4]
 gi|214033135|gb|EEB73963.1| exosome complex exonuclease 1 [Thermococcus sp. AM4]
          Length = 248

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 23/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           R+ GR++ ++R+I +   V K A+GS  +++G   +L       ++ P  ++      + 
Sbjct: 16  RIDGRKKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDTAVLR 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S   R K          RS EI ++I  AL   + L       + +  +V+Q
Sbjct: 76  VRYNMAPFSVEERKK-----PGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A IT A +AL D    M D              VAA + G + G  ++DL+  
Sbjct: 131 ADAGTRVAGITAASLALADAGVPMRDL-------------VAACAAGKIDGEIVLDLNKD 177

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  + D    +M     I  +Q        +++ F   + LA      + + Q++ + 
Sbjct: 178 EDNYGEADVPVAIMPLKNDITLLQMDG---YLTKEEFIEAVKLAIKGAKAVYQKQREALK 234

Query: 240 NE 241
            +
Sbjct: 235 EK 236


>gi|240104093|ref|YP_002960402.1| exosome complex exonuclease Rrp41 [Thermococcus gammatolerans EJ3]
 gi|259645401|sp|C5A2B9|ECX1_THEGJ RecName: Full=Probable exosome complex exonuclease 1
 gi|239911647|gb|ACS34538.1| 3'-5' exoribonuclease, exosome complex exonuclease 1, Rrp41p-like
           protein (Rrp41p) [Thermococcus gammatolerans EJ3]
          Length = 249

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 23/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           R+ GR++ ++R+I +   V K A+GS  +++G   +L       ++ P  ++      + 
Sbjct: 17  RIDGRRKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDTAVLR 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S   R K          RS EI ++I  AL   + L       + +  +V+Q
Sbjct: 77  VRYNMAPFSVEERKK-----PGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQ 131

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A IT A +AL D    M D              VAA + G + G  ++DL+  
Sbjct: 132 ADAGTRVAGITAASLALADAGVPMRDL-------------VAACAAGKIDGEIVLDLNKD 178

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  + D    +M     I  +Q        +++ F   + LA      + + Q++ + 
Sbjct: 179 EDNYGEADVPVAIMPLKNDITLLQMDG---YLTKEEFIEAVKLAIKGAKAVYQKQREALK 235

Query: 240 NE 241
            +
Sbjct: 236 EK 237


>gi|325969194|ref|YP_004245386.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28]
 gi|323708397|gb|ADY01884.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28]
          Length = 246

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 101/242 (41%), Gaps = 22/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWIT 60
           R  GR  N+ R + +   V   AEGS LV +G+T +L       +VP   +       + 
Sbjct: 15  RSDGRLPNEHRPVRMEVGVISNAEGSALVAYGNTVILAAVYGPREVPQKHLELPDKAILR 74

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M+P ST    K          R  EI ++I  AL  VV L       I +  +V+Q
Sbjct: 75  VRYHMIPFSTSEGRKSPT----PSRREIEISKVIRTALEPVVILERFPRTTIDVYIEVLQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG TR   IT A +AL D    M D              +  +S G + G  IVDL+  
Sbjct: 131 ADGSTRVTGITAASLALADAGIPMRDL-------------LVGVSVGKVSGTIIVDLNQL 177

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED   + D    +M   G I  +Q   E   ++       + LA      + +LQKDV+ 
Sbjct: 178 EDQYGEGDMPLAIMYGRGLITLMQADGE---WTPTEVNQAVELAFKAAEQIYRLQKDVLK 234

Query: 240 NE 241
           N+
Sbjct: 235 NK 236


>gi|332796515|ref|YP_004458015.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
 gi|332694250|gb|AEE93717.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
          Length = 243

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 107/243 (44%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           +RL GR+ +++R + +   V K A+GS +V+ G+T +L       +  P  +       +
Sbjct: 15  LRLDGRRPDELRPMKMEVGVLKNADGSAIVEVGNTKILAAVYGPREMHPRHLALPNRAVL 74

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P ST  R      +     R  E+ ++I  AL S + +       I +  +V+
Sbjct: 75  RVRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESQILVEQFPRTSIDVFMEVL 129

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QAD GTR A++  A +A+ D                 ++  +AA++ G   G  ++DL+ 
Sbjct: 130 QADAGTRLASLMAASLAVVDAGI-------------PVRDLIAAVAVGKADGVVVLDLNE 176

Query: 180 GEDSTIDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED   + D    M  S G I  +Q +      + + F   + LA   I  +  L+K+ +
Sbjct: 177 PEDMWGEADMPVAMMPSIGQINLLQLNG---NMTPEEFRQGMELAMKGINIIYNLEKETL 233

Query: 239 SNE 241
            N+
Sbjct: 234 KNK 236


>gi|14591333|ref|NP_143411.1| exosome complex exonuclease Rrp41 [Pyrococcus horikoshii OT3]
 gi|29336584|sp|O59223|ECX1_PYRHO RecName: Full=Probable exosome complex exonuclease 1
 gi|3257978|dbj|BAA30661.1| 249aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 249

 Score =  245 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 100/242 (41%), Gaps = 23/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60
           R+ GR++ ++R I +   V K A GS  +++G   ++       +     ++      + 
Sbjct: 17  RIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELHSKHLQRPDRAILR 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S   R K          RS EI ++I  AL   + L       I +  +V+Q
Sbjct: 77  VRYNMAPFSVEERKK-----PGPDRRSIEISKVIKGALEPALILEMFPRTSIDVFIEVLQ 131

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A IT A +AL D    M D              VAA + G + G  ++DL+  
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDL-------------VAACAAGKIEGEIVLDLNKE 178

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  + D    +M     I  +Q        +++ F   + LA      + + Q++ + 
Sbjct: 179 EDNYGEADVPVAIMPLKNDITLLQMDG---YLTKEEFIEAVRLAIKGAKAVYQKQREALK 235

Query: 240 NE 241
            +
Sbjct: 236 EK 237


>gi|73669984|ref|YP_305999.1| exosome complex exonuclease 1 [Methanosarcina barkeri str. Fusaro]
 gi|72397146|gb|AAZ71419.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosarcina barkeri
           str. Fusaro]
          Length = 501

 Score =  245 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 102/242 (42%), Gaps = 22/242 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           +RL GR  +++R + +   V   A+GSC +++G   +L       +  P   +      I
Sbjct: 14  LRLDGRHADEIRPMKIEIGVLSRADGSCYLEWGRNKVLVGVFGPREAHPRRSQRADTAVI 73

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y M   ST +R            RS EI ++   A   V+         I I  +++
Sbjct: 74  RYKYNMASFSTEDR-----ARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEIL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QAD GTRTAAI  + +AL D    M             KG V + + G + G  ++DL+ 
Sbjct: 129 QADAGTRTAAINASSIALADAGIPM-------------KGLVTSCAFGKVDGQIVLDLNK 175

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED+  + D    MT  G I  +Q        + D       L K    +++++Q+ V+ 
Sbjct: 176 EEDNYGEADFPVAMTQDGEITLLQMDG---NLTTDEIRKGFELVKKGCKEILEIQQAVLR 232

Query: 240 NE 241
            +
Sbjct: 233 TK 234


>gi|330835838|ref|YP_004410566.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
 gi|329567977|gb|AEB96082.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
          Length = 245

 Score =  245 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 108/242 (44%), Gaps = 23/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60
           RL GR+ +++R + +   V K A+GS LV+ G+T ++       +  P  +       + 
Sbjct: 16  RLDGRRPDELRPMKMEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRATLR 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST  R      S     R  E+ ++I  AL S V +       I +  +VIQ
Sbjct: 76  VRYHMTPFSTDERK-----SPVPSRREIELSKVIREALESSVLVEQFPRSSIDVFMEVIQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A++  A +A+ D                 ++  +AA++ G   G  ++DL+  
Sbjct: 131 ADAGTRLASLMAASLAIIDAGI-------------PVRDAIAAVAVGKADGVVVLDLNEP 177

Query: 181 EDSTIDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED   + D    M  S G I  +Q +      + + F   L+LA   I  +  ++K+V+ 
Sbjct: 178 EDMWGEADMPVAMMPSLGQITLIQLNGH---MTPEEFKQGLDLAYKGINTIYSMEKEVLK 234

Query: 240 NE 241
           ++
Sbjct: 235 SK 236


>gi|11498104|ref|NP_069329.1| exosome complex exonuclease Rrp41 [Archaeoglobus fulgidus DSM 4304]
 gi|29336576|sp|O29757|ECX1_ARCFU RecName: Full=Probable exosome complex exonuclease 1
 gi|83754325|pdb|2BA0|F Chain F, Archaeal Exosome Core
 gi|83754326|pdb|2BA0|E Chain E, Archaeal Exosome Core
 gi|83754327|pdb|2BA0|D Chain D, Archaeal Exosome Core
 gi|83754334|pdb|2BA1|D Chain D, Archaeal Exosome Core
 gi|83754335|pdb|2BA1|E Chain E, Archaeal Exosome Core
 gi|83754336|pdb|2BA1|F Chain F, Archaeal Exosome Core
 gi|2650133|gb|AAB90744.1| ribonuclease PH (rph) [Archaeoglobus fulgidus DSM 4304]
          Length = 258

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 20/240 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +RL GR+ +++R I +   V K A+GSC ++ G   ++       +V P  +++     I
Sbjct: 16  LRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSKAII 75

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P S   R +          RS EI ++   A  +V+         I I  +V+
Sbjct: 76  RYRYNMAPFSVEERKR-----PGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVL 130

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QAD G+RTA +  A VAL D    M             KG + +++ G   G  ++D   
Sbjct: 131 QADAGSRTACLNAASVALVDAGVPM-------------KGMITSVAVGKADGQLVLDPMK 177

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED+  + D  F  +  +G I  +         ++D     + LAK     + ++Q++ I
Sbjct: 178 EEDNFGEADMPFAFLIRNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQREAI 237


>gi|91772267|ref|YP_564959.1| exosome complex exonuclease Rrp41 [Methanococcoides burtonii DSM
           6242]
 gi|91711282|gb|ABE51209.1| Archaeal exosome complex RNA-binding protein [Methanococcoides
           burtonii DSM 6242]
          Length = 343

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 22/242 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           +RL GR+ +++R +++   V   A+GSC +++G+  +L       +  P  ++      +
Sbjct: 14  LRLDGRRVDEIRPMTVEMGVLSRADGSCYLEWGNNKVLAAVYGPRELHPRRLQRPSEALV 73

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M   S  +R++          RS EI ++ G A  +VV         I +  +V+
Sbjct: 74  RYRYNMAAFSVEDRIR-----PGPSRRSTEISKVSGEAFETVVMKQFYPGAVIDVFAEVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QAD GTRTAAI  A +AL D    M             KG VAA + G + G  ++DL+ 
Sbjct: 129 QADAGTRTAAINAATLALVDAGIPM-------------KGLVAACAVGKVDGQLVIDLNK 175

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED+  D D    MT+ G I  +Q        + D     + + +     +  +QK+ + 
Sbjct: 176 PEDNYGDADLPIAMTEDGEITLLQMDG---NLTADEIAKGVEMVRKGCEQIFAIQKEALL 232

Query: 240 NE 241
           ++
Sbjct: 233 SK 234


>gi|70606425|ref|YP_255295.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius DSM
           639]
 gi|76364178|sp|Q4JB27|ECX1_SULAC RecName: Full=Probable exosome complex exonuclease 1
 gi|68567073|gb|AAY80002.1| ribonuclease PH [Sulfolobus acidocaldarius DSM 639]
          Length = 243

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 106/243 (43%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWI 59
           +R  GR+ +++R I +   V K A+GS + + G+T ++       E  P  +       +
Sbjct: 15  LRTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKASL 74

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P ST  R      +     R  E+ ++I  AL S + L+      I I  +V+
Sbjct: 75  RVRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVL 129

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QAD GTR  A+  A +AL D    M D              +A ++ G   G  ++DL+ 
Sbjct: 130 QADAGTRLVALMAASMALADAGIPMRDL-------------IAGVAVGKADGSLVLDLNE 176

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED   + D    V+   G +V +Q +      + D F     LA+  I+ +  LQK+ +
Sbjct: 177 QEDMWGEADMPIAVLPSLGQVVLLQLNG---FMTPDEFRRAFELAQKGISSIYALQKEAL 233

Query: 239 SNE 241
            N+
Sbjct: 234 KNK 236


>gi|307594960|ref|YP_003901277.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429]
 gi|307550161|gb|ADN50226.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429]
          Length = 246

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 100/242 (41%), Gaps = 22/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWIT 60
           R  GR  N+ R + +   V K AEGS LV +G+T +L       +VP   +       + 
Sbjct: 15  RSDGRLPNEHRPVRMEVGVIKNAEGSALVAYGNTVILAAVYGPREVPQKHLELPDKAILR 74

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST    K          R  EI ++I  AL  VV L       I +  +V+Q
Sbjct: 75  VRYHMAPFSTSEGRKSPT----PSRREIEISKVIRTALEPVVILERFPRTTIDVYIEVLQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG TR   IT A +AL D    M D              +  +S G + G  +VDL+  
Sbjct: 131 ADGSTRVTGITAASLALADAGIPMRDL-------------LVGVSIGKVSGTIVVDLNQL 177

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED   + D    +M   G I  +Q   E   ++       L+LA      + +L+K+ + 
Sbjct: 178 EDQYGEGDMPLAIMYGRGLITLMQADGE---WTPTEVNQALDLAFKAAEQIYRLEKETLK 234

Query: 240 NE 241
           + 
Sbjct: 235 SR 236


>gi|167044981|gb|ABZ09646.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           crenarchaeote HF4000_APKG8G2]
          Length = 245

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 100/243 (41%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +R  GR+ N+ R++++   V K A+GS  ++FG   +L        V P  + N   G +
Sbjct: 16  IRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGIL 75

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P S   R      +     R  EI +++  AL   V L       I +  +V+
Sbjct: 76  RVRYHMEPFSVSERK-----NPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVL 130

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGG+R AA+  A VAL D    M D              V + + G      I+D++ 
Sbjct: 131 QADGGSRCAALDAASVALADAGIPMRD-------------MVCSCAAGKAADALILDVNN 177

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED     D     M + G I  +Q        + D F   + L  +    + ++QK+ +
Sbjct: 178 EEDQAGQADMPIGYMPNLGKITLLQLDG---VLTTDEFKKCIELGLEGCKQVYEIQKNAL 234

Query: 239 SNE 241
             +
Sbjct: 235 REK 237


>gi|298674553|ref|YP_003726303.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303]
 gi|298287541|gb|ADI73507.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303]
          Length = 333

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 22/242 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           +R+ GR+ +++R + +   V   A+GSC +++G+  +++      +  P  ++      I
Sbjct: 14  LRVDGRRTDEIRPMKVDIGVLSRADGSCYLEWGNNKIISAVYGPRELHPRRMQRPDAAVI 73

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y M   S  +R +          RS EI ++   A   VV      +  I +  +V+
Sbjct: 74  RYKYNMASFSVEDRQR-----PGPSRRSSEISKVSSEAFEPVVMTQFYPNTVIDVFSEVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           +AD GTRTAAI  A +AL D                 LK  V+A + G + G  ++DL+ 
Sbjct: 129 EADAGTRTAAINAATLALIDAGI-------------PLKSLVSACAVGKVDGQLVLDLNK 175

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            ED+  + D    +T  G I  +Q        ++D     + L K+    + ++Q++ + 
Sbjct: 176 KEDNEGEADLPVAITQDGEITLLQMDGH---LTEDEIKQAMELVKNGCQQIQQIQREALL 232

Query: 240 NE 241
            +
Sbjct: 233 KK 234


>gi|284161628|ref|YP_003400251.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631]
 gi|284011625|gb|ADB57578.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631]
          Length = 244

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 100/242 (41%), Gaps = 20/242 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           RL GR   ++R I +   V   A+GSC ++ G   ++       +V P  + +     I 
Sbjct: 12  RLDGRDFEELRPIKIEAGVLNRADGSCYLEMGGNKVVAAVYGPREVHPKHLEDPSKAIIR 71

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S   R KR         RS EI ++   AL  V+         I I  +V+Q
Sbjct: 72  YRYSMAPFSVEER-KRPG----PDRRSIEISKVSREALEPVIMKELFPRSAIDIFVEVLQ 126

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD G+RTA +  A VAL D    M             KG V +++   + G  ++D    
Sbjct: 127 ADAGSRTACLNAASVALIDAGIPM-------------KGMVTSVAVAKVDGILVLDPMKE 173

Query: 181 EDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  + D  F  +  +G I  +         S++     L +AK     + +LQ++ I 
Sbjct: 174 EDNYGEADIPFAFLIRNGKIESITLLQMDGRVSKEELKKALEMAKKGAMQIYQLQREAIL 233

Query: 240 NE 241
            +
Sbjct: 234 KK 235


>gi|218884635|ref|YP_002429017.1| Probable exosome complex exonuclease 1 [Desulfurococcus
           kamchatkensis 1221n]
 gi|218766251|gb|ACL11650.1| Probable exosome complex exonuclease 1 [Desulfurococcus
           kamchatkensis 1221n]
          Length = 242

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 107/240 (44%), Gaps = 23/240 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           +R+ GR+  ++R + +   V K A GS LV++G+T  L       + +P  I       +
Sbjct: 12  LRIDGRKPEELRPVRIALGVLKNANGSALVEYGNTKALAAVYGPREALPKHISLPDRAIL 71

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P ST  R      S     R  E+ ++I  AL SVV  S      I +  +++
Sbjct: 72  RVRYHMAPFSTTERK-----SPAPSRREIELSKVIREALESVVFTSQFPRASIDVFIEIL 126

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTRT  +T A +AL D    M D              V  ++ G + G  ++D++ 
Sbjct: 127 QADGGTRTTGLTAASLALADAGIPMRDL-------------VIGVAVGKVDGVLVLDINE 173

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED   + D    +M ++G IV +Q +      +   F   L++A   +  + K  K+ +
Sbjct: 174 LEDEYGEADLPVGIMPNTGEIVLLQLNG---VLTSGEFKQALDMAYKGVEQIYKTAKEAM 230


>gi|167045225|gb|ABZ09885.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           crenarchaeote HF4000_APKG8O8]
          Length = 245

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 100/243 (41%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +R  GR+ N+ R++++   V K A+GS  ++FG   +L        V P  + N   G +
Sbjct: 16  IRCDGRKVNETRKVTIKAGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHLSNPDTGIL 75

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P S   R      +     R  EI +++  AL   V L       I +  +V+
Sbjct: 76  RVRYHMEPFSVDERK-----NPAPSRREIEISKVVKEALEPAVILEKFPRTVIDVFLEVL 130

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTR AA+  A VAL D    M D              V A + G +    I+D++ 
Sbjct: 131 QADGGTRCAALDAASVALADAGIPMRD-------------MVCACAAGKVADTLIIDVNN 177

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED     D     M + G +  +Q        + + F   + L  +    + ++QK  +
Sbjct: 178 EEDQAGQADMPVGYMPNLGKVTLLQLDG---VLTPEEFKKCVELGIEGSKQVYEIQKQAL 234

Query: 239 SNE 241
             +
Sbjct: 235 REK 237


>gi|295322007|pdb|3M7N|D Chain D, Archaeoglobus Fulgidus Exosome With Rna Bound To The
           Active Site
 gi|295322008|pdb|3M7N|E Chain E, Archaeoglobus Fulgidus Exosome With Rna Bound To The
           Active Site
 gi|295322009|pdb|3M7N|F Chain F, Archaeoglobus Fulgidus Exosome With Rna Bound To The
           Active Site
 gi|295322019|pdb|3M85|D Chain D, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
           Active Site
 gi|295322020|pdb|3M85|E Chain E, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
           Active Site
 gi|295322021|pdb|3M85|F Chain F, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
           Active Site
          Length = 258

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 20/240 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +RL GR+ +++R I +   V K A+GSC ++ G   ++       +V P  +++     I
Sbjct: 16  LRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAII 75

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P S   R +          RS EI ++   A  +V+         I I  +V+
Sbjct: 76  RYRYNMAPFSVEERKR-----PGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVL 130

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QAD G+RTA +  A VAL D    M             KG + +++ G   G  ++D   
Sbjct: 131 QADAGSRTACLNAASVALVDAGVPM-------------KGMITSVAVGKADGQLVLDPMK 177

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED+  + D  F  +  +G I  +         ++D     + LAK     + ++Q++ I
Sbjct: 178 EEDNFGEADMPFAFLIRNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQREAI 237


>gi|126640155|ref|YP_001083139.1| ribonuclease PH [Acinetobacter baumannii ATCC 17978]
          Length = 174

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 92/175 (52%), Positives = 117/175 (66%), Gaps = 2/175 (1%)

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           MLPRST +R  REA  G+Q GR+QEIQR+IGR+LR++VDL  LG   I IDCDVIQADGG
Sbjct: 1   MLPRSTHSRCDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQADGG 60

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
           TRTA+ITGA VAL D +  +   + K      LKG VAAIS GM     ++DL Y EDS 
Sbjct: 61  TRTASITGAAVALVDAMNVL--LAQKKIKQDPLKGLVAAISVGMYQDEVLLDLCYEEDSN 118

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
              D N VMT +G  +E+QG+AE   F++    AML +A+  IA+LIK Q++ + 
Sbjct: 119 CQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELIKKQQEALG 173


>gi|328949911|ref|YP_004367246.1| ribonuclease PH [Marinithermus hydrothermalis DSM 14884]
 gi|328450235|gb|AEB11136.1| ribonuclease PH [Marinithermus hydrothermalis DSM 14884]
          Length = 240

 Score =  241 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 81/242 (33%), Positives = 122/242 (50%), Gaps = 6/242 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   +MR + +T   + +AEGS LV+ G T +L T ++ + VP  +   + GW+  
Sbjct: 3   RKDGRGPLEMRPLVITPNYNAFAEGSALVELGQTRVLATVSITDGVPRHVHPRRSGWLMC 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LPR+T  R +RE    + GGR+QE+QR +GRA R+ +DL AL  + +I+D DV+QA
Sbjct: 63  EYSLLPRATPTRTQRE--RFKLGGRTQEVQRFLGRAFRAALDLKALAGKTVIVDADVLQA 120

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYG 180
           DGGTR A+I G + AL   L  M        L         A+S G       ++DL   
Sbjct: 121 DGGTRVASILGGYAALFLALDRMVRDGT---LDDWPLLEFGAVSLGWFGEDRVLLDLTAI 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED     D   V T  G ++E+ G  E     +  +  M+    + I  L+      +S 
Sbjct: 178 EDENAWADLTVVATRDGELIEIHGGGEGRPVPRAVYERMVAAGLEVIPSLVAAVHRAVSK 237

Query: 241 EV 242
            +
Sbjct: 238 PL 239


>gi|288930697|ref|YP_003434757.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642]
 gi|288892945|gb|ADC64482.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642]
          Length = 245

 Score =  241 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 102/242 (42%), Gaps = 20/242 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           R+ GR  +++R I +   V K A+GSC ++ G   ++       KV P  + +     + 
Sbjct: 13  RIDGRLPDELRPIKIEAGVLKNADGSCYLEMGKNKVMAAVYGPRKVQPKHLADPTQAIVR 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S   R +          RS EI ++   AL S++         I I  +V+Q
Sbjct: 73  YRYNMAPFSVEERKR-----PGPDRRSVEISKVSREALESIIMKELFPRSSIDIFVEVLQ 127

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD G+RTA +  A VAL D    M             KG + +++   + G  ++D    
Sbjct: 128 ADAGSRTACLNAASVALVDAGIPM-------------KGIITSVAVAKVDGVLVLDPMKE 174

Query: 181 EDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  + D  F     +G I  +         +++     + LAK    ++ KLQ++ I 
Sbjct: 175 EDNYGEADIPFAFFIRNGKIESIALLQMDGRVTKEELMQAVELAKKGAMEIYKLQREAIM 234

Query: 240 NE 241
            +
Sbjct: 235 RK 236


>gi|327400938|ref|YP_004341777.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6]
 gi|327316446|gb|AEA47062.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6]
          Length = 246

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 100/242 (41%), Gaps = 20/242 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           RL GR  +++R I +   V + A+GSC ++ G   ++       +V P  +++     I 
Sbjct: 14  RLDGRDFDELRPIKIEAGVLRRADGSCYIEMGKNKIVAAVYGPREVHPRHLQDPSRAIIR 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S   R K          RS EI ++   AL  V+         I I  +V+Q
Sbjct: 74  YRYNMAPFSVEERKK-----PGPDRRSIEISKVSREALEPVILKELFPRSGIDIFVEVLQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTRTA +  A VAL D    M             +G + A++   + G  ++D    
Sbjct: 129 ADAGTRTACLNAASVALIDAGVAM-------------RGMITAVAVAKVEGEIVLDPMKE 175

Query: 181 EDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  + D  F  +  +G I  +         S +     L LAK     +  +Q++ I 
Sbjct: 176 EDNYGEADVPFAFLIRNGKIESIALLQMDGKMSAEEMKKALELAKKGAMQIYNIQREAIM 235

Query: 240 NE 241
            +
Sbjct: 236 RK 237


>gi|52549528|gb|AAU83377.1| ribonuclease PH [uncultured archaeon GZfos27G5]
          Length = 247

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 23/239 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60
           R  GR  +++R I +   V K A+GSC ++ G+  ++       +  P   ++ K   I 
Sbjct: 13  RSDGRGFDELRPIKIEVGVLKRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMAVIK 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST +R KR         RS EI ++   A   V+         I +  +++Q
Sbjct: 73  FRYNMAPFSTDDR-KRPG----PDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQ 127

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           +D GTRTA I  A +AL D    M+D              V++I+ G + G  ++DL+  
Sbjct: 128 SDAGTRTAGINAASIALADAGIPMKDL-------------VSSIAVGKINGEVVLDLNAA 174

Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           ED+  + D    M   +  I  +Q        +Q+ F   L LA      + +LQ+  +
Sbjct: 175 EDNNGEADMPIAMIARTNTITALQMDGR---MTQEEFGRGLKLAMGACHQIYELQRAAL 230


>gi|323474735|gb|ADX85341.1| exosome complex exonuclease 1 [Sulfolobus islandicus REY15A]
          Length = 245

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 21/241 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60
           R+ GR+ +++R I +   V K A+GS + + G+T  +       E  P  +       + 
Sbjct: 16  RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST  R      +     R  E+ ++I  AL S V +       I +  +++Q
Sbjct: 76  VRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD G+R  ++  A +AL D    M D              +A ++ G   G  ++DL+  
Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIVLDLNEP 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   + D    M  S  + +V         + + F    +LA   I  +  L+++ + +
Sbjct: 178 EDMWGEADMPVAMMPS--LNQVTLFQLNGNMTPEEFRQAFDLAVKGINIIYNLEREALKS 235

Query: 241 E 241
           +
Sbjct: 236 K 236


>gi|52550028|gb|AAU83877.1| ribonuclease PH [uncultured archaeon GZfos34H10]
          Length = 242

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 105/242 (43%), Gaps = 23/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60
           RLSGR   ++R I +   V K A+GSC  + G+  ++       +  P   +N K   + 
Sbjct: 14  RLSGRGFEELRPIKIEVGVLKRADGSCYFELGNNKVIAGVYGPREMHPRHFQNAKMAVVK 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S  +R KR         RSQEI  +  +AL  V+         I +  +V+Q
Sbjct: 74  YRYNMAPFSVDDR-KRPG----PDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           +D GTRTA I  A VAL D    M D              V++++ G + G  ++DLD  
Sbjct: 129 SDAGTRTAGINAASVALADAGIPMRDL-------------VSSVAIGKIDGEVVLDLDAK 175

Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  + D    M   +  I  +Q         ++ F   L LA D    + +LQK  + 
Sbjct: 176 EDNFGEADMPIAMIARTNTITLLQMDGR---LKKEEFERGLKLAMDGSRKIYELQKAALV 232

Query: 240 NE 241
            +
Sbjct: 233 EK 234


>gi|52550472|gb|AAU84321.1| ribonuclease PH [uncultured archaeon GZfos9D1]
          Length = 245

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 23/239 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60
           RL GR  +++R I +   V K A+GSC ++ G+  ++       +  P   ++ K   + 
Sbjct: 13  RLDGRGFDELRPIKIEVGVLKRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMAVVK 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST +R KR         RS EI ++   A   V+         I +  +++Q
Sbjct: 73  FRYNMAPFSTDDR-KRPG----PDRRSVEISKVCREAFDPVIMRELYPKMGIDVYVELLQ 127

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           +D GTRTA I  A +AL D    M+D              V++I+ G + G  ++DL+  
Sbjct: 128 SDAGTRTAGINAASIALADAGIPMKDL-------------VSSIAVGKIGGEMVLDLNAA 174

Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           ED+  + D    M   +  I  +Q        +Q+ F   L LA      + +LQ+  +
Sbjct: 175 EDNNGEADMPIAMIARTNTITALQMDGR---MTQEEFGRGLKLAMGACHQIYELQRAAL 230


>gi|320335008|ref|YP_004171719.1| ribonuclease PH [Deinococcus maricopensis DSM 21211]
 gi|319756297|gb|ADV68054.1| ribonuclease PH [Deinococcus maricopensis DSM 21211]
          Length = 236

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 88/234 (37%), Positives = 126/234 (53%), Gaps = 4/234 (1%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R   + R + +TR V+ +AEGS L+  G T +L T T++ KVP  +R  K GW+ AEY M
Sbjct: 5   RPTTEPRPLHVTRGVNMHAEGSALLHLGRTQVLATVTVDPKVPPHMRGKKTGWLMAEYSM 64

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +PR+T +R  R+       GR  EIQR++GRA R+ VDL     R +++DCDV+QADGGT
Sbjct: 65  MPRATQDRTPRDRNLS--NGRRHEIQRLLGRAFRATVDLRHFRDRTLVVDCDVLQADGGT 122

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           R A++   + AL D    +            L   V A S G++ G   VDLDY ED   
Sbjct: 123 RVASVLAGYAALWDYADRLIRTGKL--SEWPLLHEVGACSVGLVGGEVRVDLDYLEDVQA 180

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           + D N V T SG ++E QG AE A  +   +  +L    D    L+    + ++
Sbjct: 181 EADLNVVATSSGLLIEAQGGAEGAPIAPGVYEQLLRAGLDGTRTLLARVHEDLA 234


>gi|226357252|ref|YP_002786992.1| tRNA nucleotidyltransferase [Deinococcus deserti VCD115]
 gi|226319242|gb|ACO47238.1| putative tRNA nucleotidyltransferase (Phosphate-dependent
           exonuclease) (Ribonuclease PH) (RNase PH) [Deinococcus
           deserti VCD115]
          Length = 249

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 93/228 (40%), Positives = 125/228 (54%), Gaps = 4/228 (1%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
           GR   + R +S+ R V+ +A GS  +  G T +L T TLE+K    +R  K GW+TAEY 
Sbjct: 14  GRGLLEPRPVSVKRGVNPHAPGSAHLIMGRTEILATVTLEDKPAPHMRGKKEGWLTAEYS 73

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           MLPR+T +R  RE     Q GR  EIQR++GRALR+ VDL    ++ I +DCDV+ ADGG
Sbjct: 74  MLPRATNDRQARE--RNLQNGRRHEIQRLLGRALRASVDLKYFRNQTIYVDCDVLVADGG 131

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
           TR A+I     ALHD    + +          L   V AIS G++     VDLDY ED  
Sbjct: 132 TRVASILAGHAALHDFCDRLINSGQL--SEWPLTHKVGAISVGLVGEEVRVDLDYAEDKV 189

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
              D N V TD+G ++EVQG AE    S   +  +L+     I  ++ 
Sbjct: 190 ARADLNVVATDTGLVIEVQGGAEEGPISLAEYSQLLHTGVQAIHGVMD 237


>gi|312137048|ref|YP_004004385.1| ribosomal RNA-processing protein rrp41/ski6 [Methanothermus
           fervidus DSM 2088]
 gi|311224767|gb|ADP77623.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanothermus
           fervidus DSM 2088]
          Length = 236

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 100/244 (40%), Gaps = 23/244 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWI 59
           +R  GR  N++R + +   V K A+GS  ++ G   +L             I+      I
Sbjct: 11  VRKDGRAYNELRPVKIKAGVLKRADGSSYIELGSNKILAAVYGPRDPQITKIKRPDRAII 70

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P S   R KR         RS EI ++   AL   + L       I I  +V+
Sbjct: 71  RCRYNMAPFSVEER-KRPG----PDRRSIEISKITAEALAPSIILEKFPRSSIDIFIEVL 125

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           +ADGGTR A IT A VAL D    + D              V A S G + G+ ++DL  
Sbjct: 126 EADGGTRCAGITAASVALADAGIPLRDL-------------VVACSAGKVNGHVVLDLTE 172

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED   + D    +M  +  I  +Q   E    + +     ++LA +    + KLQK  I
Sbjct: 173 EEDKEGEADVPVAIMPRTKEITLLQVDGE---LTPEELEKAIDLAIEGCMSINKLQKKSI 229

Query: 239 SNEV 242
             ++
Sbjct: 230 ERKI 233


>gi|227827677|ref|YP_002829457.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.14.25]
 gi|238619848|ref|YP_002914674.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.4]
 gi|227459473|gb|ACP38159.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.14.25]
 gi|238380918|gb|ACR42006.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.4]
          Length = 245

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 21/241 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60
           R+ GR+ +++R I +   V K A+GS + + G+T  +       E  P  +       + 
Sbjct: 16  RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST  R      +     R  E+ ++I  AL S V +       I +  +++Q
Sbjct: 76  VRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD G+R  ++  A +AL D    M D              +A ++ G   G  ++DL+  
Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIVLDLNEP 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   + D    M  S  + +V         + + F    +LA   I  +  L+++ + +
Sbjct: 178 EDMWGEADMPVAMMPS--LNQVTLFQLNGNMTPEEFRQAFDLAVKGINIIYNLEREALKS 235

Query: 241 E 241
           +
Sbjct: 236 K 236


>gi|296243060|ref|YP_003650547.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera
           aggregans DSM 11486]
 gi|296095644|gb|ADG91595.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera
           aggregans DSM 11486]
          Length = 249

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 68/239 (28%), Positives = 106/239 (44%), Gaps = 23/239 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60
           RL GR+ +++R + +   V K A GS LV++G T +L       + +P  I       + 
Sbjct: 20  RLDGRRLDELRPVKIKVGVLKNANGSALVEYGGTKVLAAVFGPREALPRHIALPDRATLR 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST  R      S     R  E+ ++I  AL SVV         I I  +V+Q
Sbjct: 80  VRYHMAPFSTSERK-----SPAPSRREIELSKVIREALESVVFSEQFPRTSIDIFIEVLQ 134

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA +T A VAL D    M+D              V  ++ G + G  ++D+   
Sbjct: 135 ADGGTRTAGLTAASVALADAGIPMKDL-------------VIGVAVGKIEGNLVLDISEL 181

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           ED   + D    +  + G IV +Q +      + +   A + LA   +  + K+ K+ +
Sbjct: 182 EDEYGEADLPLGIAPNIGEIVLLQLNG---VLTPEELKAGIELAWKGVDSIYKIAKEAL 237


>gi|313680799|ref|YP_004058538.1| RNAse PH [Oceanithermus profundus DSM 14977]
 gi|313153514|gb|ADR37365.1| RNAse PH [Oceanithermus profundus DSM 14977]
          Length = 240

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 89/242 (36%), Positives = 125/242 (51%), Gaps = 6/242 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR     R + +T R   YAEGS LV+ G T +L   +L   VP  ++  + GW+ A
Sbjct: 3   RPDGRSPTGRRPLKITPRYLDYAEGSALVELGRTRVLVAVSLTPGVPRHMQGKRSGWLMA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LPRST +R +RE    + GGR+QE+QR +GRA R+ VDL  L ++ I++D DVIQA
Sbjct: 63  EYNLLPRSTESRTQRE--RFKLGGRTQEVQRFLGRAFRAAVDLDLLPNQTIVVDADVIQA 120

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYG 180
           DGGTR AAI G + AL      +        L        AAIS G   G   +VDLD  
Sbjct: 121 DGGTRVAAILGGYAALVQAFDALVRAGR---LDDWPLTEFAAISLGWAGGDEVLVDLDAR 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED  +  D   V T  G ++E+ G  E     +  +  M++    +I  L+      ++ 
Sbjct: 178 EDDRVHADLTVVGTAEGELIEIHGGGEGRPVPRAIYDRMVDEGLRQIPGLVAEVHKQLAE 237

Query: 241 EV 242
            V
Sbjct: 238 GV 239


>gi|237739458|ref|ZP_04569939.1| ribonuclease PH [Fusobacterium sp. 2_1_31]
 gi|229423066|gb|EEO38113.1| ribonuclease PH [Fusobacterium sp. 2_1_31]
          Length = 171

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 86/172 (50%), Positives = 117/172 (68%), Gaps = 2/172 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ N+ R+I +T+ V+ YAEGS L++ G+T ++ TA++ EKVP ++R T  GW+T
Sbjct: 2   LREDGRKFNEERKIKITKDVNIYAEGSVLIEVGNTKVICTASVSEKVPPFLRGTGKGWVT 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R +REA  G+  GR+ EIQR+IGRALRS +DL  LG R I IDCDVIQ
Sbjct: 62  AEYSMLPRATNERNQREASKGKLTGRTVEIQRLIGRALRSAIDLEKLGERLITIDCDVIQ 121

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           ADGGTRT +ITG +VAL   ++ +     +      L  +VAAIS G +   
Sbjct: 122 ADGGTRTTSITGGYVALALAIKKL--LKEEILEENPLIANVAAISVGKIDSE 171


>gi|327310389|ref|YP_004337286.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20]
 gi|326946868|gb|AEA11974.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20]
          Length = 245

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 22/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60
           R  GR  +QMRE+ ++  V   A+GS +V +G+T  +       +  P  +       + 
Sbjct: 14  RADGRTPDQMREVKISVGVISNADGSAMVSYGNTTAVAAVYGPREMHPRHLSLPDRAVMR 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST +  K  A       R  EI +++  AL   + L      +I +  +++Q
Sbjct: 74  VRYHMAPFSTRDERKNPA----PSRREIEISKVLREALEPAIFLEQFPRSRIDVFVEIVQ 129

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG TR A++T A +AL D    M D              V  +S G++ G  ++DL+  
Sbjct: 130 ADGSTRVASLTAASLALADAGVPMRDL-------------VIGVSVGLVNGTVVLDLNGL 176

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  + D     M + G I  +Q      ++S+D F   L LA      +    ++ + 
Sbjct: 177 EDNYGEGDMPVGYMPNLGRITLLQLDG---SWSRDKFAEALKLAIKGAEYVYSKAREALK 233

Query: 240 NE 241
            +
Sbjct: 234 TK 235


>gi|229584881|ref|YP_002843383.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.27]
 gi|228019931|gb|ACP55338.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.27]
          Length = 245

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 21/241 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60
           R+ GR+ +++R I +   V K A+GS + + G+T  +       E  P  +       + 
Sbjct: 16  RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST  R      +     R  E+ ++I  AL S V +       I +  +++Q
Sbjct: 76  VRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD G+R  ++  A +AL D    M D              +A ++ G   G  ++DL+  
Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIVLDLNEA 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   + D    M  S  + +V         + + F    +LA   I  +  L+++ + +
Sbjct: 178 EDMWGEADMPVAMMPS--LNQVTLFQLNGNMTPEEFRQAFDLAVKGINIIYNLEREALKS 235

Query: 241 E 241
           +
Sbjct: 236 K 236


>gi|52548652|gb|AAU82501.1| ribonuclease PH [uncultured archaeon GZfos18B6]
          Length = 242

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 104/242 (42%), Gaps = 23/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60
           RLSGR   ++R I +   V K A+GSC  + G+   +       +  P   +N K   + 
Sbjct: 14  RLSGRGFEELRPIKIDVGVLKRADGSCYFELGNNKAIAAVYGPREMHPRHFQNAKMAVVK 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S  +R KR         RSQEI  +  +AL  V+         I +  +V+Q
Sbjct: 74  YRYNMAPFSVDDR-KRPG----PDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           +D GTRTA I  A VAL D    M+D              V++++ G + G  ++DLD  
Sbjct: 129 SDAGTRTAGINAASVALADAGIPMKDL-------------VSSVAIGKIDGEVVLDLDAK 175

Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  + D    M   +  I  +Q         ++ F   L LA      + +LQK  + 
Sbjct: 176 EDNFGEADMPIAMVARTNTITLLQMDGR---LKKEEFERGLQLAMTGCRKIYELQKAALV 232

Query: 240 NE 241
            +
Sbjct: 233 EK 234


>gi|305663898|ref|YP_003860186.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans
           DSM 17230]
 gi|304378467|gb|ADM28306.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans
           DSM 17230]
          Length = 242

 Score =  238 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 102/242 (42%), Gaps = 22/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           R  GR+   +R I +   V K A+GS +V+ G T +L       +V P          I 
Sbjct: 14  RHDGRRPEDLRPIRMEVGVLKNADGSAIVEIGKTVVLAAVYGPREVVPRHEEIVDRAVIR 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y ML  ST    K  A       R  E+ ++I  AL   +  S      I I  +VI 
Sbjct: 74  CRYRMLSFSTLGERKSPA----PSRREIELSKVIREALEPAIISSMYPRTAIDIFVEVIN 129

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           A+GGTRTA IT A +AL D    + D              VAA++ G + G  ++DLD  
Sbjct: 130 ANGGTRTAGITAASLALADAGIPLADL-------------VAAVAVGKIDGVIVLDLDEL 176

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED   + D     M     I  +Q +      +++ F A L L    I  + +LQK+ + 
Sbjct: 177 EDMYGEADMPIAAMPSLNRITMLQLNG---VLTKEEFKAALKLGLQGIKQIYELQKETLR 233

Query: 240 NE 241
            +
Sbjct: 234 RK 235


>gi|284174962|ref|ZP_06388931.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus 98/2]
 gi|299689089|pdb|3L7Z|B Chain B, Crystal Structure Of The S. Solfataricus Archaeal Exosome
 gi|299689092|pdb|3L7Z|E Chain E, Crystal Structure Of The S. Solfataricus Archaeal Exosome
 gi|299689095|pdb|3L7Z|H Chain H, Crystal Structure Of The S. Solfataricus Archaeal Exosome
 gi|261602405|gb|ACX92008.1| exosome complex exonuclease 1 [Sulfolobus solfataricus 98/2]
          Length = 245

 Score =  238 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 100/242 (41%), Gaps = 23/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60
           R  GR+ +++R I +   V K A+GS + + G+T  +       E  P  +       + 
Sbjct: 16  RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST  R      +     R  E+ ++I  AL S V +       I +  +++Q
Sbjct: 76  VRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD G+R  ++  A +AL D    M D              +A ++ G   G  I+DL+  
Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIILDLNET 177

Query: 181 EDSTIDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED   + D    M  S   +   Q +    + + D F    +LA   I  +  L+++ + 
Sbjct: 178 EDMWGEADMPIAMMPSLNQVTLFQLNG---SMTPDEFRQAFDLAVKGINIIYNLEREALK 234

Query: 240 NE 241
           ++
Sbjct: 235 SK 236


>gi|52549121|gb|AAU82970.1| ribonuclease PH [uncultured archaeon GZfos24D9]
          Length = 242

 Score =  238 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 104/242 (42%), Gaps = 23/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60
           RLSGR   ++R I +   + K A+GSC  + G+   L       +  P   +N K   + 
Sbjct: 14  RLSGRGFEELRPIKIEVGLLKRADGSCYFELGNNKALAAVYGPREMHPRHFQNAKRAVVK 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S  +R KR         RSQEI  +  +AL  V+         I +  +V+Q
Sbjct: 74  YRYNMAPFSVDDR-KRPG----PDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           +D GTRTA I  A VAL D    M D              V++++ G + G  ++DLD  
Sbjct: 129 SDAGTRTAGINAASVALADAGIPMRDL-------------VSSVAIGKIDGEVVLDLDAK 175

Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  + D    M   +  I  +Q         ++ F   L LA +    + +LQK  + 
Sbjct: 176 EDNFGEADVPIAMIARTNTITLLQMDGR---LKKEEFERGLKLAMNGCRKIYELQKAALV 232

Query: 240 NE 241
            +
Sbjct: 233 EK 234


>gi|323477463|gb|ADX82701.1| exosome complex exonuclease 1 [Sulfolobus islandicus HVE10/4]
          Length = 245

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 99/241 (41%), Gaps = 21/241 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60
           R+ GR+  ++R I +   V K A+GS + + G+T  +       E  P  +       + 
Sbjct: 16  RIDGRKPEELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST  R      +     R  E+ ++I  AL S V +       I +  +++Q
Sbjct: 76  VRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD G+R  ++  A +AL D    M D              +A ++ G   G  ++DL+  
Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIVLDLNEP 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   + D    M  S  + +V         + + F    +LA   I  +  L+++ + +
Sbjct: 178 EDMWGEADMPVAMMPS--LNQVTLFQLNGNMTPEEFRQAFDLAVKGINIIYNLEREALKS 235

Query: 241 E 241
           +
Sbjct: 236 K 236


>gi|52352385|gb|AAU43674.1| ribonuclease PH [uncultured archaeon GZfos26D8]
          Length = 247

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 23/239 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60
           RL GR  +++R I +   V K A+GSC ++ GD  ++       +  P   ++ K   + 
Sbjct: 13  RLDGRGFDELRPIKIEVGVLKRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMAVVK 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST +R KR         RS EI ++   A   V+         I +  +++Q
Sbjct: 73  FRYNMAPFSTDDR-KRPG----PDRRSVEISKVCREAFDPVIMRELYPKTGIEVYVELLQ 127

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           +D GTRTA I  A +AL D    M+D              V++I+ G + G  ++DL+  
Sbjct: 128 SDAGTRTAGINAASIALADAGIPMKDL-------------VSSIAVGKIGGEMVLDLNAA 174

Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           ED+  + D    M   +  I  +Q        +++ F   L LA      + +LQ+  +
Sbjct: 175 EDNNGEADMPIAMIARTNTITALQMDGR---LTKEEFGRGLKLAMGACHQIYELQRTAL 230


>gi|16082286|ref|NP_394747.1| exosome complex exonuclease Rrp41 [Thermoplasma acidophilum DSM
           1728]
 gi|29336949|sp|Q9HIP2|ECX1_THEAC RecName: Full=Probable exosome complex exonuclease 1
 gi|10640637|emb|CAC12415.1| RNase PH (yeast SIK6) related protein [Thermoplasma acidophilum]
          Length = 248

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 110/243 (45%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWI 59
           +RL GR  N++R I +   V   A+GS  +++G   ++       E  P   ++  H  +
Sbjct: 17  LRLDGRSFNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGVYGPKEAYPKHSQDIDHAIV 76

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
            A Y M   S   R KR         R+ EI ++I  AL S + +      +I +  +V+
Sbjct: 77  KARYNMAAFSVDER-KRPG----PDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVL 131

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QAD GTR A +T A VAL D    M D              V   + G + G+ ++DL  
Sbjct: 132 QADAGTRIAGLTAATVALADAGVPMRD-------------MVVGCTAGKVDGHMVLDLSK 178

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED+  + D    +M  +G IV +Q   +    ++D  +  +++  +    + ++Q++ +
Sbjct: 179 EEDNYGEADIPIAIMPKTGDIVLMQMDGD---VTEDELYQAMDMIFEATKRISQIQREAL 235

Query: 239 SNE 241
            N+
Sbjct: 236 LNK 238


>gi|15897636|ref|NP_342241.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus P2]
 gi|29337007|sp|Q9UXC2|ECX1_SULSO RecName: Full=Probable exosome complex exonuclease 1
 gi|71042717|pdb|2BR2|B Chain B, Rnase Ph Core Of The Archaeal Exosome
 gi|71042719|pdb|2BR2|D Chain D, Rnase Ph Core Of The Archaeal Exosome
 gi|71042721|pdb|2BR2|F Chain F, Rnase Ph Core Of The Archaeal Exosome
 gi|71042723|pdb|2BR2|H Chain H, Rnase Ph Core Of The Archaeal Exosome
 gi|71042725|pdb|2BR2|J Chain J, Rnase Ph Core Of The Archaeal Exosome
 gi|71042727|pdb|2BR2|L Chain L, Rnase Ph Core Of The Archaeal Exosome
 gi|71042729|pdb|2BR2|N Chain N, Rnase Ph Core Of The Archaeal Exosome
 gi|71042731|pdb|2BR2|P Chain P, Rnase Ph Core Of The Archaeal Exosome
 gi|71042733|pdb|2BR2|R Chain R, Rnase Ph Core Of The Archaeal Exosome
 gi|71042735|pdb|2BR2|T Chain T, Rnase Ph Core Of The Archaeal Exosome
 gi|71042737|pdb|2BR2|V Chain V, Rnase Ph Core Of The Archaeal Exosome
 gi|71042739|pdb|2BR2|X Chain X, Rnase Ph Core Of The Archaeal Exosome
 gi|83754539|pdb|2C37|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754541|pdb|2C37|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754543|pdb|2C37|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754545|pdb|2C37|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754547|pdb|2C37|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754549|pdb|2C37|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754551|pdb|2C37|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754553|pdb|2C37|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754555|pdb|2C37|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754557|pdb|2C37|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754559|pdb|2C37|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754561|pdb|2C37|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754563|pdb|2C38|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754565|pdb|2C38|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754567|pdb|2C38|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754569|pdb|2C38|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754571|pdb|2C38|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754573|pdb|2C38|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754575|pdb|2C38|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754577|pdb|2C38|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754579|pdb|2C38|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754581|pdb|2C38|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754583|pdb|2C38|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754585|pdb|2C38|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754587|pdb|2C39|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754589|pdb|2C39|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754591|pdb|2C39|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754593|pdb|2C39|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754595|pdb|2C39|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754597|pdb|2C39|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754599|pdb|2C39|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754601|pdb|2C39|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754603|pdb|2C39|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754605|pdb|2C39|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754607|pdb|2C39|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754609|pdb|2C39|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|6015742|emb|CAB57569.1| ribonuclease PH [Sulfolobus solfataricus P2]
 gi|13813903|gb|AAK41031.1| Ribonuclease PH (rph) [Sulfolobus solfataricus P2]
          Length = 248

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 57/241 (23%), Positives = 100/241 (41%), Gaps = 21/241 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60
           R  GR+ +++R I +   V K A+GS + + G+T  +       E  P  +       + 
Sbjct: 19  RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST  R      +     R  E+ ++I  AL S V +       I +  +++Q
Sbjct: 79  VRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD G+R  ++  A +AL D    M D              +A ++ G   G  I+DL+  
Sbjct: 134 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIILDLNET 180

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   + D    M  S  + +V       + + D F    +LA   I  +  L+++ + +
Sbjct: 181 EDMWGEADMPIAMMPS--LNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKS 238

Query: 241 E 241
           +
Sbjct: 239 K 239


>gi|52548823|gb|AAU82672.1| ribonuclease PH [uncultured archaeon GZfos19A5]
          Length = 247

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 23/239 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60
           RL GR  +++R I +   V K A+GSC ++ GD  ++       +  P   ++ K   + 
Sbjct: 13  RLDGRGFDELRPIKIEVGVLKRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMAVVK 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST +R KR         RS EI ++   A   V+         I +  +++Q
Sbjct: 73  FRYNMAPFSTDDR-KRPG----PDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQ 127

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           +D GTRTA I  A +AL D    M+D              V++I+ G + G  ++DL+  
Sbjct: 128 SDAGTRTAGINAASIALADAGIPMKDL-------------VSSIAVGKINGEMVLDLNAA 174

Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           ED+  + D    M   +  I  +Q        +++ F   L LA      + +LQ+  +
Sbjct: 175 EDNNGEADMPIAMIARTNTITALQMDGR---LTKEEFERGLKLAVGACHQIYELQRTAL 230


>gi|119719494|ref|YP_919989.1| exosome complex exonuclease 1 [Thermofilum pendens Hrk 5]
 gi|119524614|gb|ABL77986.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermofilum pendens
           Hrk 5]
          Length = 245

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 98/242 (40%), Gaps = 23/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60
           R+ GR  ++MR + +   V K A+GS  V+ G+  +L       E +P          + 
Sbjct: 16  RVDGRLPDEMRPLRVEAGVLKNADGSAYVELGNNKVLAAVYGPREPMPRHEALPDRAILK 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y MLP S   R      S +   R  E+ ++I  AL   V L+      I +   +++
Sbjct: 76  CRYSMLPFSVAERK-----SPQPSRREIELSKVIREALAPAVFLNEYPRTSIEVYIHILE 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTA+I    VAL D    M D              VAAI+ G +    ++D++  
Sbjct: 131 ADGGTRTASIIAGSVALADAGIAMRDL-------------VAAIAVGKIGNVLVLDINGI 177

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED   D D    +M   G I  +Q       F+       L LA+     +   Q   + 
Sbjct: 178 EDQYGDGDMPIAMMPQRGEITLLQADG---VFTPQEIEEALRLAQKAFQKIYAEQVRALK 234

Query: 240 NE 241
            +
Sbjct: 235 TK 236


>gi|227830374|ref|YP_002832154.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus L.S.2.15]
 gi|229579192|ref|YP_002837590.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.G.57.14]
 gi|229582056|ref|YP_002840455.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.N.15.51]
 gi|284997880|ref|YP_003419647.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5]
 gi|227456822|gb|ACP35509.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.S.2.15]
 gi|228009906|gb|ACP45668.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.G.57.14]
 gi|228012772|gb|ACP48533.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.N.15.51]
 gi|284445775|gb|ADB87277.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5]
          Length = 245

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 54/241 (22%), Positives = 100/241 (41%), Gaps = 21/241 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60
           R+ GR+ +++R I +   V K A+GS + + G+T  +       E  P  +       + 
Sbjct: 16  RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST  R      +     R  E+ ++I  AL S V +       I +  +++Q
Sbjct: 76  VRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD G+R  ++  A +AL D    M D              +A ++ G   G  ++DL+  
Sbjct: 131 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIVLDLNEP 177

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED   + D    M  S  + +V         + + F    +L+   I  +  L+++ + +
Sbjct: 178 EDMWGEADMPVAMMPS--LNQVTLFQLNGNMTPEEFRQAFDLSVKGINIIYNLEREALKS 235

Query: 241 E 241
           +
Sbjct: 236 K 236


>gi|84490039|ref|YP_448271.1| exosome complex exonuclease Rrp41 [Methanosphaera stadtmanae DSM
           3091]
 gi|84373358|gb|ABC57628.1| putative exosome complex, exonuclease 1 subunit [Methanosphaera
           stadtmanae DSM 3091]
          Length = 232

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 61/243 (25%), Positives = 104/243 (42%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +R  GR  N +R + +   V   A+GS  ++ G+  +L       ++            +
Sbjct: 6   IRKDGRAYNTLRNMKMEVGVLNNADGSAYIECGNNKILVGVYGPREIHSKKHSKPDGAVL 65

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y M P S   R KR         RS EI ++I  A+   + L       I I  +V+
Sbjct: 66  RCKYNMAPFSVKER-KRPG----PNRRSTEISKLISEAITPNIFLEKYPRASIDISIEVL 120

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           +A+GGTR   I GA +AL D    M+D              ++A + G +  + ++DL  
Sbjct: 121 EAEGGTRCLGIVGASLALADAEIPMKDL-------------ISACAVGKVDDHIVLDLSE 167

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED T   D    ++  +G I  +Q        +Q+ F   L+LA D    + +LQK+ +
Sbjct: 168 QEDQTGQADMPLAIIPRTGEITFLQMDG---NLTQEEFEEALDLAYDGCYYINQLQKEAL 224

Query: 239 SNE 241
            ++
Sbjct: 225 LSK 227


>gi|13541138|ref|NP_110826.1| exosome complex exonuclease Rrp41 [Thermoplasma volcanium GSS1]
 gi|29336899|sp|Q97BZ5|ECX1_THEVO RecName: Full=Probable exosome complex exonuclease 1
 gi|14324525|dbj|BAB59452.1| ribonuclease PH [Thermoplasma volcanium GSS1]
          Length = 248

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWI 59
           +RL GR  N++R I +   V   A+GS  +++G   ++       E  P   ++  H  +
Sbjct: 17  LRLDGRSFNELRPIKIEAGVLNRADGSAYIEWGGNKIIVGVYGPKEAYPKHSQDIDHAVV 76

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
            A Y M   S   R KR         R+ EI ++I  AL S + +      +I +  +V+
Sbjct: 77  KARYNMAAFSVDER-KRPG----PDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVL 131

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QAD GTR A +T A VAL D    M D              V   + G + G+ ++DL  
Sbjct: 132 QADAGTRIAGLTAATVALADAGIPMRD-------------MVVGCTAGKVDGHIVLDLSK 178

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED+  + D    +M  +G IV +Q   +    ++D F+   ++  +    + ++Q++ +
Sbjct: 179 EEDNFGEADIPMAIMPKTGEIVLLQMDGD---VTEDEFYEATSMIIEATKKISQIQRNAL 235

Query: 239 SNE 241
            N+
Sbjct: 236 LNK 238


>gi|40217446|emb|CAE46379.1| ribonuclease PH [uncultured archaeon]
 gi|268323829|emb|CBH37417.1| Probable exosome complex exonuclease 2 [uncultured archaeon]
          Length = 242

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 103/242 (42%), Gaps = 23/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWIT 60
           RLSGR   ++R I +   V K A+GSC  + GD   L       +  P   +N K   + 
Sbjct: 14  RLSGRGFEELRPIKIDVGVLKRADGSCYFELGDNKALAAVYGPREMHPRHFQNAKMAVVK 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S  +R KR         RSQEI  +  +AL  V+         I +  +V+Q
Sbjct: 74  YRYNMAPFSVDDR-KRPG----PDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           +D GTRTA I  A VAL D    M D              V++++ G + G  ++DLD  
Sbjct: 129 SDAGTRTAGINAASVALADAGIPMRDL-------------VSSVAIGKIDGEVVLDLDAK 175

Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  + D    M   +  I  +Q         ++ F   L +A      + +LQ+  + 
Sbjct: 176 EDNFGEADMPIAMIARTNTITLLQMDGR---LKKEEFERGLKIAMSGCRKIYELQRAALV 232

Query: 240 NE 241
            +
Sbjct: 233 EK 234


>gi|27528790|emb|CAD29620.1| hypothetical protein [Streptomyces olivaceoviridis]
          Length = 180

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 85/174 (48%), Positives = 112/174 (64%)

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+VVD  ALG   I++DCDV+QADGG
Sbjct: 1   MLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVVDYKALGENTIVLDCDVLQADGG 60

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
           TRTAAITGA+VAL D +   +         + + G V+A+S G++ G P++DL Y ED  
Sbjct: 61  TRTAAITGAYVALADAVAWAQGKKLIRAGRKPITGTVSAVSVGIVGGVPLLDLCYEEDVK 120

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            D D N V T  G  VEVQG+AE   F++D   A+L+LA     +L  LQ   +
Sbjct: 121 ADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVSGCTELAALQTKAL 174


>gi|325959906|ref|YP_004291372.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21]
 gi|325331338|gb|ADZ10400.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21]
          Length = 243

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 100/242 (41%), Gaps = 23/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           R   R  +++R++ +   V + A+GS  ++ G   +L       ++    +       + 
Sbjct: 19  RADNRAFDELRKMKIEAGVLERADGSAYLEIGGNKVLAAVYGPRELFVRRLMQPNKAVLR 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y M P S  +R KR         RS EI ++  +AL   V L       I +  +VI+
Sbjct: 79  CKYNMAPFSVDDR-KRPG----PDRRSVEISKLASQALTPAVFLEKFPRSTIDVFIEVIE 133

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           A+GGTR A IT A VAL D    M D              V A + G   G  I+DL   
Sbjct: 134 AEGGTRCAGITAASVALADAGIPMRD-------------MVVACAAGKSDGKVILDLSEV 180

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED     D    +M  +G I  +Q        +++ F   L+LA +    + + QK  I 
Sbjct: 181 EDKEGQADVPIAIMPRTGEITLLQMDG---NLTEEEFEQALDLAINGCKIISEKQKAAIK 237

Query: 240 NE 241
           N 
Sbjct: 238 NR 239


>gi|254168259|ref|ZP_04875105.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
 gi|197622768|gb|EDY35337.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
          Length = 243

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 103/243 (42%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           +R+ GR  NQ+R I +   V K A+GS  +++G   ++       +  P  ++      +
Sbjct: 13  LRIDGRLPNQLRPIKMEVGVLKRADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRAIV 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
            A Y M P S   R +          R+ E+ ++I  AL SV+ +       I +  +V+
Sbjct: 73  RARYSMAPFSVDERKR-----PGPDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVL 127

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QAD GTR A IT A +AL D    M D              +   + G +    ++DL+ 
Sbjct: 128 QADAGTRVAGITVASLALADAGIPMRDL-------------IVGCAAGKIDDVVVLDLNK 174

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED+    D    +M  +  I  +Q   +    S +     +++A D    + ++Q + +
Sbjct: 175 EEDNFGQADVPMAIMPRTKEIALLQMDGD---MSYEELTTAMDMAMDAAEKIHEMQVEAL 231

Query: 239 SNE 241
             +
Sbjct: 232 KRK 234


>gi|218201746|gb|EEC84173.1| hypothetical protein OsI_30553 [Oryza sativa Indica Group]
 gi|222641142|gb|EEE69274.1| hypothetical protein OsJ_28540 [Oryza sativa Japonica Group]
          Length = 242

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 110/241 (45%), Gaps = 23/241 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGW 58
            R+ GR+ N+MR++     V   A+GS L + G+T ++       +V    +  N+K   
Sbjct: 10  FRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKDAL 69

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  EY M   STG+R ++     +   RS EI  +I + + + +    +   QI I   V
Sbjct: 70  VRCEYRMADFSTGDRRRKP----KGDRRSTEISLVIRQTMEASILTHLMPRSQIDIFVQV 125

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QADGGTR A I  A +AL D    M D              V + S G LC  P++DL+
Sbjct: 126 LQADGGTRAACINAATLALADAGIPMRDI-------------VTSCSAGYLCSTPLLDLN 172

Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           Y EDS    D     +T    +  +Q  A+      D F  +++LA +    +    ++V
Sbjct: 173 YIEDSAGGPDVTVGFLTKMDKVTLLQMDAK---LPMDTFETVMDLAIEGCKAIANYIREV 229

Query: 238 I 238
           +
Sbjct: 230 L 230


>gi|289595860|ref|YP_003482556.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
 gi|289533647|gb|ADD07994.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
          Length = 245

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 103/243 (42%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           +R+ GR  NQ+R I +   V K A+GS  +++G   ++       +  P  ++      +
Sbjct: 15  LRIDGRLPNQLRPIKMEVGVLKRADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRAIV 74

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
            A Y M P S   R +          R+ E+ ++I  AL SV+ +       I +  +V+
Sbjct: 75  RARYSMAPFSVDERKR-----PGPDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVL 129

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QAD GTR A IT A +AL D    M D              +   + G +    ++DL+ 
Sbjct: 130 QADAGTRVAGITVASLALADAGIPMRDL-------------IVGCAAGKIDDVVVLDLNK 176

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED+    D    +M  +  I  +Q   +    S +     +++A D    + ++Q + +
Sbjct: 177 EEDNFGQADVPMAIMPRTKEIALLQMDGD---MSYEELTTAMDMAMDAAEKIHEMQVEAL 233

Query: 239 SNE 241
             +
Sbjct: 234 KRK 236


>gi|126031138|pdb|2JE6|B Chain B, Structure Of A 9-Subunit Archaeal Exosome
 gi|145579801|pdb|2JEA|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna
 gi|145579805|pdb|2JEB|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions
          Length = 250

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 99/241 (41%), Gaps = 21/241 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60
           R  GR+ +++R I +   V K A+GS + + G+T  +       E  P  +       + 
Sbjct: 21  RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST  R      +     R  E+ ++I  AL S V +       I +  +++Q
Sbjct: 81  VRYHMTPFSTDERK-----NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 135

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD G+R  ++  A +AL D    M D              +A ++ G   G  I+DL+  
Sbjct: 136 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIILDLNET 182

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           E    + D    M  S  + +V       + + D F    +LA   I  +  L+++ + +
Sbjct: 183 EAMWGEADMPIAMMPS--LNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKS 240

Query: 241 E 241
           +
Sbjct: 241 K 241


>gi|330508837|ref|YP_004385265.1| exosome complex exonuclease 1 [Methanosaeta concilii GP-6]
 gi|328929645|gb|AEB69447.1| exosome complex exonuclease 1 [Methanosaeta concilii GP-6]
          Length = 253

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 95/239 (39%), Gaps = 22/239 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +RL GR+ +++R + +   +   A+GSC ++ G   ++       +V P  ++      +
Sbjct: 16  LRLDGRRADELRPVKIEVGILARADGSCYIEMGGNKVIAAVYGPREVHPRHLQEVTRAIV 75

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M   S   R KR         RS E+ ++   AL  V+  S      I +  +V+
Sbjct: 76  RYRYNMASFSVEER-KRPG----PDRRSYELSKVSREALEPVILTSFFPRSVIDVFVEVL 130

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QAD GTRTA I                          +K  +++ + G +    ++D   
Sbjct: 131 QADAGTRTAGIN-------------AAAVALADAGIPMKSMISSCAAGKVGDTIVLDPMK 177

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED+    D    MT +G I  +Q        + D F   + +A     D+ +LQ+  +
Sbjct: 178 EEDNFGQADLPIAMTPNGDITLMQMDG---NLTPDEFGQAVTMAMKGAKDIYELQRRAL 233


>gi|161527940|ref|YP_001581766.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1]
 gi|259645400|sp|A9A5C9|ECX1_NITMS RecName: Full=Probable exosome complex exonuclease 1
 gi|160339241|gb|ABX12328.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1]
          Length = 244

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 102/242 (42%), Gaps = 23/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           R  GR  ++ R I +     K A+GS  ++FGD  +L        V P  + +T  G + 
Sbjct: 17  RCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHMSDTDTGILR 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S G R      +     R  EI ++I  AL   V L       + +  +V+Q
Sbjct: 77  VRYHMEPFSVGERK-----NPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQ 131

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTR AA+T A VAL D    M D              VAAI+ G +    I+D++  
Sbjct: 132 ADGGTRCAALTAASVALADAGIPMRD-------------MVAAIAAGKVADTVILDVNNE 178

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED     D     M +   I  +Q        + + +   + +  D    + +LQK  ++
Sbjct: 179 EDQAGQADMPIGYMPNLEKITLLQLDG---VLTPEEYKKCIQVGVDGCKLVYELQKKALN 235

Query: 240 NE 241
           ++
Sbjct: 236 DK 237


>gi|111220956|ref|YP_711750.1| ribonuclease PH [Frankia alni ACN14a]
 gi|111148488|emb|CAJ60159.1| ribonuclease PH [Frankia alni ACN14a]
          Length = 204

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 92/193 (47%), Positives = 123/193 (63%), Gaps = 7/193 (3%)

Query: 46  KVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105
            VP W + +  GW+TAEY MLPR+T  R  RE+V GR GGR+ EI R+IGR+LR+ +DL+
Sbjct: 4   GVPRWRKGSGLGWVTAEYSMLPRATNTRNDRESVRGRIGGRTHEISRLIGRSLRACIDLA 63

Query: 106 ALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS 165
           ALG   I IDCDV+ ADGGTRTAAITGA+VAL D  + +   +        +   VAA+S
Sbjct: 64  ALGENTIAIDCDVLLADGGTRTAAITGAYVALVDAARWLGRPAA-------ITTSVAAVS 116

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
            G++ G P++DL Y EDST D D N V T +   VEVQG+AE   F +     +L+LA  
Sbjct: 117 VGVVRGEPMLDLAYTEDSTADTDMNVVCTGADGFVEVQGTAEGVPFDRAMLDNLLDLAVF 176

Query: 226 RIADLIKLQKDVI 238
             A L ++Q + +
Sbjct: 177 GCAQLAEIQAEAL 189


>gi|294464242|gb|ADE77635.1| unknown [Picea sitchensis]
          Length = 243

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 109/240 (45%), Gaps = 22/240 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHGWI 59
           +RL GR+  +MR++     V   A+GS + + G+T ++       +V    +       +
Sbjct: 9   LRLDGRRPLEMRQLHAQLGVVDKADGSAIFEMGNTKVIAAVYGPHEVQNKNQQLPDQALV 68

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             EY M   STG+R +R     +   R+ EI  +I + + + +    +   QI I   V+
Sbjct: 69  RCEYSMANFSTGDRPRR----SKGDRRATEISLVIRQTMEATILTHLMPRTQIDIFVQVL 124

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTR+A I  A +AL D    M D              V + + G L   P++D++Y
Sbjct: 125 QADGGTRSACINAATLALADAGIPMCDL-------------VTSCAAGYLNSTPLLDMNY 171

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS    D    +MT    +  +Q  ++      D F  ++ LA +    +++  +DV+
Sbjct: 172 MEDSAGGPDVAVGLMTKMDKLSLLQMDSK---LPMDIFETVMQLAIEGCKAIVRYIQDVL 228


>gi|222444527|ref|ZP_03607042.1| hypothetical protein METSMIALI_00139 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434092|gb|EEE41257.1| hypothetical protein METSMIALI_00139 [Methanobrevibacter smithii
           DSM 2375]
          Length = 233

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 103/243 (42%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           +R  GR+ N++R I +   V + A+GS  ++ G   +L       +     +     G I
Sbjct: 5   IREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTGVI 64

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P S  +R +          RS EI ++   ALR  + L       + I  +VI
Sbjct: 65  RCRYNMAPFSVDDRKR-----PGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVI 119

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           +A+GGTR A IT A VAL D    M+D              V   + G +    ++DL  
Sbjct: 120 EAEGGTRCAGITAASVALVDAGIPMKDI-------------VVGCAAGKVNDKIVLDLSE 166

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED     D    +M  +G I  +Q   +    SQ+ F   +NLA +    + ++QK+ +
Sbjct: 167 VEDKEGQADVPIAMMPRTGEITLLQSDGD---LSQEEFEEAINLAMEGCRKVNEIQKEAL 223

Query: 239 SNE 241
             +
Sbjct: 224 MKK 226


>gi|148642302|ref|YP_001272815.1| exosome complex exonuclease Rrp41 [Methanobrevibacter smithii ATCC
           35061]
 gi|148551319|gb|ABQ86447.1| ribonuclease PH, Rph [Methanobrevibacter smithii ATCC 35061]
          Length = 234

 Score =  231 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 103/243 (42%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           +R  GR+ N++R I +   V + A+GS  ++ G   +L       +     +     G I
Sbjct: 6   IREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTGVI 65

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P S  +R +          RS EI ++   ALR  + L       + I  +VI
Sbjct: 66  RCRYNMAPFSVDDRKR-----PGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVI 120

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           +A+GGTR A IT A VAL D    M+D              V   + G +    I+DL  
Sbjct: 121 EAEGGTRCAGITAASVALVDAGIPMKDI-------------VVGCAAGKVNDEIILDLSE 167

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED     D    +M  +G I  +Q   +    SQ+ F   +NLA +    + ++QK+ +
Sbjct: 168 VEDKEGQADVPIAMMPRTGEITLLQSDGD---LSQEEFEEAINLAMEGCRKVNEIQKEAL 224

Query: 239 SNE 241
             +
Sbjct: 225 MKK 227


>gi|288869794|ref|ZP_06409500.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374]
 gi|288860272|gb|EFC92570.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374]
          Length = 234

 Score =  231 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 103/243 (42%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           +R  GR+ N++R I +   V + A+GS  ++ G   +L       +     +     G I
Sbjct: 6   IREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTGVI 65

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P S  +R +          RS EI ++   ALR  + L       + I  +VI
Sbjct: 66  RCRYNMAPFSVDDRKR-----PGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVI 120

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           +A+GGTR A IT A VAL D    M+D              V   + G +    ++DL  
Sbjct: 121 EAEGGTRCAGITAASVALVDAGIPMKDI-------------VVGCAAGKVNDKIVLDLSE 167

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED     D    +M  +G I  +Q   +    SQ+ F   +NLA +    + ++QK+ +
Sbjct: 168 VEDKEGQADVPIAMMPRTGEITLLQSDGD---LSQEEFEEAINLAMEGCRKVNEIQKEAL 224

Query: 239 SNE 241
             +
Sbjct: 225 MKK 227


>gi|242088177|ref|XP_002439921.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor]
 gi|241945206|gb|EES18351.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor]
          Length = 242

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 109/241 (45%), Gaps = 23/241 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGW 58
            R+ GR+ N+MR++     V   A+GS L + G+T ++       +V    +  N+    
Sbjct: 10  FRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSNEAL 69

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  EY M   STG+R ++     +   RS EI  +I + + + +    +   QI I   V
Sbjct: 70  VRCEYRMAEFSTGDRRRKP----KGDRRSTEISLVIRQTMEASILTHLMPRSQIDIYVQV 125

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QADGGTR+A I  A +AL D    M D              V + S G LC  P++DL+
Sbjct: 126 LQADGGTRSACINAATLALADAGIPMRDI-------------VTSCSAGYLCSTPLLDLN 172

Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           Y EDS    D    ++     +  +Q  A+      D F  ++ LA +    +    ++V
Sbjct: 173 YLEDSAGGSDVTVGILAKMDKVTLLQMDAK---LPMDTFENVMGLAIEGCKAIATYIREV 229

Query: 238 I 238
           +
Sbjct: 230 L 230


>gi|119872348|ref|YP_930355.1| exosome complex exonuclease Rrp41 [Pyrobaculum islandicum DSM 4184]
 gi|254782537|sp|A1RST0|ECX1_PYRIL RecName: Full=Probable exosome complex exonuclease 1
 gi|119673756|gb|ABL88012.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum islandicum
           DSM 4184]
          Length = 246

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 106/243 (43%), Gaps = 22/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           +R  GR  +QMRE+++T  +   A+GS +V +G T  +       +  P  +     G +
Sbjct: 13  VRADGRAPDQMREVNITVGIVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P ST +  K          R  EI +++  AL   V L      +I +  +++
Sbjct: 73  RVRYHMAPFSTKDERKSPT----PTRREIEISKILREALEPAVVLEQYPRSRIDVFIEIL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADG TR A++T A +AL D   +M D              V  +S G++ G  ++DL+ 
Sbjct: 129 QADGSTRVASLTAASLALADAGVYMRDL-------------VIGVSVGLVDGAVVLDLNG 175

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED   + D     M +      +Q       +++D F   LNLA      + +  +D +
Sbjct: 176 LEDQYGEGDLPVGYMPNLKRFTLLQLDG---AWTRDKFLEALNLAIKGAEFVYQKARDAL 232

Query: 239 SNE 241
            ++
Sbjct: 233 KSK 235


>gi|312375907|gb|EFR23155.1| hypothetical protein AND_13423 [Anopheles darlingi]
          Length = 246

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 22/244 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ N++R I     V    +GS  V+ G+T +L       +      N +   + 
Sbjct: 9   LRLDGRRANELRHIQCKLGVFSQPDGSAYVEQGNTKVLAAVYGPHQASSKKSNHEEAIVN 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y M   STG R KR     R   +SQE+   + +AL + + +      QI +  +V+Q
Sbjct: 69  CQYSMATFSTGERKKRP----RGDRKSQEMTIHLKQALSAAIKMELYPRSQIDVYIEVLQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDY 179
           ADGG   A++  A +AL D    +             K +V A +  +  G  P++D+ +
Sbjct: 125 ADGGNYCASVNAATLALIDAGICL-------------KEYVCACTASLANGNVPLMDVSH 171

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E+++         +  SG I  ++ S     F  DH   +L  A     ++  +    +
Sbjct: 172 LEENSGGPTLTVASLPSSGKIAFMEMSQR---FHLDHLPKVLETALKGCREVQNVIDRAV 228

Query: 239 SNEV 242
              V
Sbjct: 229 REHV 232


>gi|225454436|ref|XP_002280302.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147867252|emb|CAN81194.1| hypothetical protein VITISV_022853 [Vitis vinifera]
 gi|297745390|emb|CBI40470.3| unnamed protein product [Vitis vinifera]
          Length = 241

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 106/240 (44%), Gaps = 22/240 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHGWI 59
           +RL GR+  +MR+I         A+GS   + G+T ++       +V    +  +    +
Sbjct: 9   LRLDGRRPMEMRQIRGEIGAVAKADGSAFFEMGNTKVIAAVYGPREVENRSQQISDQALV 68

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             EY M   STG+R+++     +   RS EI  +I + + + +    +   QI I   V+
Sbjct: 69  RCEYTMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTR+A I  A +AL D    M D              V + S G L   P++DL+Y
Sbjct: 125 QADGGTRSACINAATLALADAGIPMRDL-------------VTSCSAGYLNSTPLLDLNY 171

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS    D    ++     +  +Q  A+      D F  ++ LA +    +    ++V+
Sbjct: 172 VEDSAGGPDVTVGILPKLDKVTLLQMDAK---LPMDIFENVMQLAIEGCKAIANYIREVL 228


>gi|320101499|ref|YP_004177091.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus
           mucosus DSM 2162]
 gi|319753851|gb|ADV65609.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus
           mucosus DSM 2162]
          Length = 243

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 61/240 (25%), Positives = 105/240 (43%), Gaps = 23/240 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +R+ GR+ +++R + +   V K A GS LV++G+T  L       +  P  I       +
Sbjct: 13  LRVDGRRPDELRPVRIAIGVLKNANGSALVEYGNTKALAAVYGPREAMPKHISLPDRAVL 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P ST  R      S     R  E+ ++I  AL SVV  +      I +  +++
Sbjct: 73  RVRYHMAPFSTSERK-----SPAPSRREIELSKVIREALESVVFTTQYPRASIDVFIEIL 127

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTRTA +T A +AL D    M+D      + +V    V             +D++ 
Sbjct: 128 QADGGTRTAGLTAASLALADAGIPMKDLVIGVAVGKVGGVLV-------------LDINE 174

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED   + D    +  ++  IV +Q +      + + F   + +A   +  + K+ K+ +
Sbjct: 175 LEDEYGEADLPVGIAPNTNEIVLLQLNG---VLTPEEFKQAMEMAFKGVEQIYKVAKEAM 231


>gi|297821020|ref|XP_002878393.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297324231|gb|EFH54652.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 241

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 24/241 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGW 58
           +RL GR+ N+MR+I     V   A+GS + + G+T ++       ++    +     H  
Sbjct: 9   LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAV 68

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  EY M   STG+R ++     +   RS E+  +I + + + +    +   QI I   V
Sbjct: 69  VLCEYSMAQFSTGDRRRQ-----KFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQV 123

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QADGGTR+A I  A +AL D    M D +              + S G L   P++DL+
Sbjct: 124 LQADGGTRSACINAATLALADAGIPMRDLA-------------VSCSAGYLNSTPLLDLN 170

Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           Y EDS    D    ++     +  +Q  A+      + F  +  LA +    + +  ++V
Sbjct: 171 YVEDSAGGADVTVGILPKLDKVTLLQMDAK---LPMETFETVFALASEGCKAIAERIREV 227

Query: 238 I 238
           +
Sbjct: 228 L 228


>gi|15678710|ref|NP_275826.1| exosome complex exonuclease Rrp41 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|29336573|sp|O26779|ECX1_METTH RecName: Full=Probable exosome complex exonuclease 1
 gi|295321490|pdb|2WNR|B Chain B, The Structure Of Methanothermobacter Thermautotrophicus
           Exosome Core Assembly
 gi|295321492|pdb|2WNR|D Chain D, The Structure Of Methanothermobacter Thermautotrophicus
           Exosome Core Assembly
 gi|295321494|pdb|2WNR|F Chain F, The Structure Of Methanothermobacter Thermautotrophicus
           Exosome Core Assembly
 gi|2621768|gb|AAB85188.1| ribonuclease PH [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 240

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 98/243 (40%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWI 59
           +R  GR  +++R + +   + + A+GS  ++FG   +L       +     ++      I
Sbjct: 16  VREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 75

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P S   R +          RS EI ++   ALR  + L       I +  +V+
Sbjct: 76  RCRYNMAPFSVEERKR-----PGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVL 130

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           +A+GGTR A IT A VAL D    M D              V A + G +    ++DL  
Sbjct: 131 EAEGGTRCAGITAASVALADAGIPMRD-------------MVVACAAGKVGDQVVLDLSE 177

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED     D    ++  +  I  +Q        + + F   L+LA +    + ++QK+ +
Sbjct: 178 EEDKEGQADVPVAILPRTREITLLQSDG---NLTPEEFERALDLAVEGCLRIHEVQKEAL 234

Query: 239 SNE 241
              
Sbjct: 235 RKR 237


>gi|15806593|ref|NP_295308.1| ribonuclease PH [Deinococcus radiodurans R1]
 gi|21759421|sp|Q9RU11|RNPH_DEIRA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gi|6459349|gb|AAF11146.1|AE002002_4 ribonuclease PH [Deinococcus radiodurans R1]
          Length = 246

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 91/228 (39%), Positives = 129/228 (56%), Gaps = 4/228 (1%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
           GR     R +S+ R V+ +A GS  +K G T +L T TL++K    +R  K GW+TAEY 
Sbjct: 11  GRDALTPRPVSVQRGVNPHAPGSAHLKMGRTEILATVTLDDKPAPHMRGKKEGWLTAEYS 70

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           MLPRST +R  RE     Q GR  EIQR++GRALRS +DL    ++ + +DCDV+ ADGG
Sbjct: 71  MLPRSTTDRQARE--RNLQNGRRHEIQRLLGRALRSSMDLRPFKNQTLYVDCDVLVADGG 128

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
           TR A++     ALHD    + +          +  +V AIS G++     VDLDY ED  
Sbjct: 129 TRVASVLAGHAALHDFCDRLINSGQL--SEWPIVHNVGAISVGLIGDELRVDLDYEEDKV 186

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
              D N + TD+G +VEVQG AE    + D +  +L+     + D+++
Sbjct: 187 ARADLNVIATDTGLLVEVQGGAELGPITVDEYTRLLSCGVASVQDVMR 234


>gi|48477466|ref|YP_023172.1| exosome complex exonuclease Rrp41 [Picrophilus torridus DSM 9790]
 gi|48430114|gb|AAT42979.1| ribonuclease PH [Picrophilus torridus DSM 9790]
          Length = 239

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 107/242 (44%), Gaps = 22/242 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR  N+MR I +T  V   A+GS  +++G   ++    + E  P   +N     + 
Sbjct: 12  LRLDGRAFNEMRPIRITTGVVDNADGSAYIEWGANKIVVAVYVREAYPKHAQNIDKAIVK 71

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           A Y M   S   R +          R+ EI ++I  AL S + +  L   +I +  +V++
Sbjct: 72  ARYNMAGFSVEERKR-----PGPDRRTMEISKLISEALESAIMVERLPRAEIDVYIEVLE 126

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A++T A VA+ D    M+D                  + G   G  ++DL   
Sbjct: 127 ADAGTRIASLTAASVAVADAGIPMKDL-------------PVGCTAGKANGKVVLDLSKD 173

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  D D    ++  SG I+ +Q   +    S+      + +    + ++ ++Q++ + 
Sbjct: 174 EDNYGDADIPMAILPKSGKIILLQLDGD---VSEQELEEAMEMMLGAMKNISRIQREALM 230

Query: 240 NE 241
           N 
Sbjct: 231 NR 232


>gi|15233167|ref|NP_191721.1| RRP41; 3'-5'-exoribonuclease/ RNA binding [Arabidopsis thaliana]
 gi|186511299|ref|NP_001118878.1| RRP41; 3'-5'-exoribonuclease/ RNA binding [Arabidopsis thaliana]
 gi|6164938|gb|AAF04590.1|AF191741_1 exonuclease RRP41 [Arabidopsis thaliana]
 gi|6850853|emb|CAB71092.1| exonuclease RRP41 [Arabidopsis thaliana]
 gi|26452705|dbj|BAC43435.1| putative exonuclease RRP41 [Arabidopsis thaliana]
 gi|28973161|gb|AAO63905.1| putative exonuclease RRP41 [Arabidopsis thaliana]
 gi|332646711|gb|AEE80232.1| exosome complex component RRP41 [Arabidopsis thaliana]
 gi|332646712|gb|AEE80233.1| exosome complex component RRP41 [Arabidopsis thaliana]
          Length = 241

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 24/241 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGW 58
           +RL GR+ N+MR+I     V   A+GS + + G+T ++       ++    +     H  
Sbjct: 9   LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAV 68

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  EY M   STG+R ++     +   RS E+  +I + + + +    +   QI I   V
Sbjct: 69  VLCEYSMAQFSTGDRRRQ-----KFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQV 123

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QADGGTR+A I  A +AL D    M D +              + S G L   P++DL+
Sbjct: 124 LQADGGTRSACINAATLALADAGIPMRDLA-------------VSCSAGYLNSTPLLDLN 170

Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           Y EDS    D    ++     +  +Q  A+      + F  +  LA +    + +  ++V
Sbjct: 171 YVEDSAGGADVTVGILPKLDKVSLLQMDAK---LPMETFETVFALASEGCKAIAERIREV 227

Query: 238 I 238
           +
Sbjct: 228 L 228


>gi|224130470|ref|XP_002320845.1| predicted protein [Populus trichocarpa]
 gi|118489833|gb|ABK96716.1| unknown [Populus trichocarpa x Populus deltoides]
 gi|222861618|gb|EEE99160.1| predicted protein [Populus trichocarpa]
          Length = 241

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 106/240 (44%), Gaps = 22/240 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHGWI 59
           +RL GR+  +MR++         A+GS + + G+T ++       +V    +       +
Sbjct: 9   LRLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQQINDQALV 68

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             EY M   STG+R ++     +   RS EI  +I +A+   +  + +   QI I   V+
Sbjct: 69  RCEYSMANFSTGDRRRKP----KGDRRSTEISLVIRQAMEECILTNLMPRSQIDIYVQVL 124

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTR+A I  A +AL D    M D              V + S G L   P++DL+Y
Sbjct: 125 QADGGTRSACINAATLALADAGIPMRDL-------------VTSCSAGFLNSTPLLDLNY 171

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS    D    ++     +  +Q  A+      D F  ++ LA +    +    ++V+
Sbjct: 172 VEDSAGGPDVTVGILPKLDKVTLLQMDAK---LPIDTFENVMQLAVEGCKAIANYIREVL 228


>gi|242091341|ref|XP_002441503.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor]
 gi|241946788|gb|EES19933.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor]
          Length = 242

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 109/241 (45%), Gaps = 23/241 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGW 58
            R+ GR+ N+MR++     +   A+GS L + G+T ++       +V    +  N+    
Sbjct: 10  FRVDGRRPNEMRQLKGEVGIVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSNEAL 69

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  EY M   STG+R ++     +   RS EI  +I + + + +    +   QI I   V
Sbjct: 70  VRCEYRMAEFSTGDRRRKP----KGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQV 125

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QADGGTR+A I  A +AL D    M D              V + S G LC  P++DL+
Sbjct: 126 LQADGGTRSACINAATLALADAGIPMRDI-------------VTSCSAGYLCSTPLLDLN 172

Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           Y EDS    D    ++     +  +Q  A+      D F  ++ LA +    +    ++V
Sbjct: 173 YLEDSAGGSDVTVGILAKMDKVTLLQMDAK---LPMDTFENVMGLAIEGCKAIASYIREV 229

Query: 238 I 238
           +
Sbjct: 230 L 230


>gi|170070082|ref|XP_001869459.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus]
 gi|167866003|gb|EDS29386.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus]
          Length = 245

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 102/243 (41%), Gaps = 21/243 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ N++R I     V    +GS  V+ G+T +L       + P    N +   + 
Sbjct: 9   LRLDGRRSNELRRIQCKLGVFSQPDGSAYVEQGNTKVLAAVYGPHQAPAKKSNHEECVVN 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y M   STG R KR     R   +SQE+   + +AL + +        QI +  +V+ 
Sbjct: 69  CQYSMATFSTGERKKRP----RGDRKSQEMTIHLQQALSAAIKTDLYPKSQIDVYIEVLM 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGG   A++  A +AL D    +             K +V A +  +    P++D+   
Sbjct: 125 ADGGNYCASVNAATLALIDAGICL-------------KEYVCACTASLAGKVPLMDVSNL 171

Query: 181 EDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           E+ +         + +SG I  ++ S     F  DH   +L  A     ++ K+    + 
Sbjct: 172 EEMSGGPTLTVASLPNSGKIAFMEMSQR---FHLDHLPNVLETALQGCREVQKIIDQAVR 228

Query: 240 NEV 242
           + V
Sbjct: 229 DHV 231


>gi|304314830|ref|YP_003849977.1| exosome RNA binding protein [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588289|gb|ADL58664.1| predicted exosome RNA binding protein [Methanothermobacter
           marburgensis str. Marburg]
          Length = 231

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 98/243 (40%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWI 59
           +R  GR  +++R + +   + + A+GS  ++FG   +L       +     ++      I
Sbjct: 7   VREDGRAFDELRPLRIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 66

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P S   R +          RS EI ++   ALR  + L       I +  +V+
Sbjct: 67  RCRYNMAPFSVEERKR-----PGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVL 121

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           +A+GGTR A IT A VAL D    M D              V A + G +    ++DL  
Sbjct: 122 EAEGGTRCAGITAASVALADAGIPMRD-------------MVVACAAGKVNDQVVLDLSE 168

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED     D    ++  +  I  +Q        S D F   L+LA +    + ++QK+ +
Sbjct: 169 EEDKAGQADVPVAILPRTREITLLQSDG---NLSDDEFERALDLAVEGCLRIHEVQKEAL 225

Query: 239 SNE 241
              
Sbjct: 226 RKR 228


>gi|212721602|ref|NP_001131612.1| RNase PH homolog [Zea mays]
 gi|194692034|gb|ACF80101.1| unknown [Zea mays]
          Length = 242

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 110/241 (45%), Gaps = 23/241 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGW 58
            R+ GR+ N+MR++     V   A+GS L + G+T ++       +V    +  N+K   
Sbjct: 10  FRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEAL 69

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  EY M   STG+R ++     +   RS EI  +I + + + +    +   QI I   V
Sbjct: 70  VRCEYRMAEFSTGDRRRKP----KGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQV 125

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QADGGTR+A I  A +AL D    M D +              + S G LC  P++DL+
Sbjct: 126 LQADGGTRSACINAATLALADAGIPMRDIA-------------TSCSAGYLCSTPLLDLN 172

Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           Y EDS    D    ++     +  +Q  A+      D F  ++ LA +    +    ++V
Sbjct: 173 YLEDSAGGSDVTVGILAKMDKVTLLQMDAK---LPIDTFENVMGLAIEGCKAIATYIREV 229

Query: 238 I 238
           +
Sbjct: 230 L 230


>gi|302341929|ref|YP_003806458.1| ribonuclease PH [Desulfarculus baarsii DSM 2075]
 gi|301638542|gb|ADK83864.1| ribonuclease PH [Desulfarculus baarsii DSM 2075]
          Length = 232

 Score =  228 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 94/240 (39%), Positives = 141/240 (58%), Gaps = 12/240 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   QMR + ++  V+ YAEGS +  FG T +L TA++E+  P ++     GWITA
Sbjct: 3   RIDGRNPGQMRPVVISGGVNPYAEGSAICAFGQTKVLCTASVEQGAPRFLEGAGQGWITA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY MLPR+T  R  R+     Q GR++EI R++GRALR+  DL+AL    I IDCDV+ A
Sbjct: 63  EYAMLPRATHTRTGRDHA---QAGRAKEISRLVGRALRAAADLAALDGYTIRIDCDVLVA 119

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGTRTAA++G WVA           + +    Q  +  V A+S G + G  +VDL Y E
Sbjct: 120 DGGTRTAAVSGGWVA--------LALALRGLGLQPPR-QVMALSAGRVDGRLLVDLCYAE 170

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           DS+ ++D N V+   G ++E+QG+ ER  FS +    ++ +++    D++  Q   ++  
Sbjct: 171 DSSAELDLNMVLAADGQLIEIQGTGERGVFSPEELMELIAISRQAAGDIVAAQLAAVNGP 230


>gi|195622232|gb|ACG32946.1| exosome complex exonuclease RRP41 [Zea mays]
          Length = 242

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 110/241 (45%), Gaps = 23/241 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--NTKHGW 58
            R+ GR+ N+MR++     V   A+GS L + G+T ++       +V    +  N+K   
Sbjct: 10  FRVDGRRPNEMRQLKGEVGVVVRADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEAL 69

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  EY M   STG+R ++     +   RS EI  +I + + + +    +   QI I   V
Sbjct: 70  VRCEYRMAEFSTGDRRRKP----KGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQV 125

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QADGGTR+A I  A +AL D    M D +              + S G LC  P++DL+
Sbjct: 126 LQADGGTRSACINAATLALADAGIPMRDIA-------------TSCSAGYLCSTPLLDLN 172

Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           Y EDS    D    ++     +  +Q  A+      D F  ++ LA +    +    ++V
Sbjct: 173 YLEDSAGGSDVTVGILAKMDKVTLLQMDAK---LPIDTFENVMGLAIEGCKAIATYIREV 229

Query: 238 I 238
           +
Sbjct: 230 L 230


>gi|171185834|ref|YP_001794753.1| exosome complex exonuclease Rrp41 [Thermoproteus neutrophilus
           V24Sta]
 gi|254782538|sp|B1Y978|ECX1_THENV RecName: Full=Probable exosome complex exonuclease 1
 gi|170935046|gb|ACB40307.1| exosome complex exonuclease 1 [Thermoproteus neutrophilus V24Sta]
          Length = 246

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 102/243 (41%), Gaps = 22/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           +R  GR  +QMRE+ ++  V   A+GS +V +G T  +       +  P  +     G +
Sbjct: 13  VRADGRAPDQMREVQISVGVISNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P ST +  K          R  EI +++  AL   V L      +I +  +++
Sbjct: 73  RVRYHMAPFSTKDERKSPT----PSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEIL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADG TR A++T A +AL D   +M D              V  +S G++ G  ++DL+ 
Sbjct: 129 QADGSTRVASLTAASLALADAGIYMRDL-------------VIGVSVGLVDGTVVLDLNG 175

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED   + D     M +      +Q       + +D     LNLA      + +  +D +
Sbjct: 176 LEDQYGEGDLPVGYMPNLRRYTLLQLDG---AWGRDKLLEALNLAVKGAEFVYQKARDAL 232

Query: 239 SNE 241
            N 
Sbjct: 233 KNR 235


>gi|255579328|ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
 gi|223529966|gb|EEF31893.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
          Length = 241

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 61/240 (25%), Positives = 105/240 (43%), Gaps = 22/240 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59
           +RL GR+  +MR++         A+GS + + G+T ++       +V    +       +
Sbjct: 9   LRLDGRRPMEMRQLRAQIGAVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQQIIDQALV 68

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             EY M   STG+R+++     +   RS EI  +I + +   +    +   QI I   V+
Sbjct: 69  RCEYTMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEECILTHLMPRSQIDIYVQVL 124

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTR+A I  A +AL D    M D              V + S G L   P++DL+Y
Sbjct: 125 QADGGTRSACINAATLALADAGIPMRDL-------------VTSCSAGYLNSTPLLDLNY 171

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS    D    ++     +  +Q  A+      D F  ++ LA +    +    ++++
Sbjct: 172 VEDSAGGPDVTVGILPKLDKVTLLQMDAK---LPIDTFENVMQLAVEGCKAIANYIREIL 228


>gi|291233253|ref|XP_002736568.1| PREDICTED: exosome component 4-like [Saccoglossus kowalevskii]
          Length = 246

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 99/245 (40%), Gaps = 23/245 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGW 58
            R  GR+ +++R+I     V + A+GS  ++ G+T +L T     ++             
Sbjct: 12  FRADGRRPHELRKIRCRMGVFRQADGSAYIEQGNTKVLATVYGPHEITGGRSKALHDKVL 71

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  +Y M   STG R  R     +   RSQE+   + R  ++ +        QI I   V
Sbjct: 72  LNCQYSMATFSTGERKTRP----KGDRRSQEMSMNLRRTFQAAILTHLYPRSQIDIYVQV 127

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +Q+DGG   A +  A +A+ D    M D             +V A +  +L   P+VD+ 
Sbjct: 128 LQSDGGNYCACVNAATLAVIDAGIPMRD-------------YVCACTSSLLEDTPVVDIS 174

Query: 179 YGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           Y E+S    +     +  S  IV  Q   + +    D+   +L++      D+  +    
Sbjct: 175 YLEESVGSPEMVVALLPKSEQIVLFQ---QNSRLHVDNLEKVLDMGIKGCTDVYGILDQS 231

Query: 238 ISNEV 242
           +   V
Sbjct: 232 VREHV 236


>gi|94986185|ref|YP_605549.1| ribonuclease PH [Deinococcus geothermalis DSM 11300]
 gi|94556466|gb|ABF46380.1| RNAse PH [Deinococcus geothermalis DSM 11300]
          Length = 237

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 87/233 (37%), Positives = 128/233 (54%), Gaps = 5/233 (2%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
           GR     R +S+ R V+ +A GS  ++ G T +L T ++E+K    +R  K GW+TAEY 
Sbjct: 8   GRDALTPRPLSVRRGVNPHAPGSVHLQLGRTEILATVSVEDKPAPHMRGKKEGWLTAEYA 67

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           MLPR+T +R  RE     Q GR  EIQR++GRALR+ +DL     + + +DCDV+ ADGG
Sbjct: 68  MLPRATTDRQARE--RNLQNGRRHEIQRLLGRALRAGIDLRHFRGQTLYVDCDVLVADGG 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
           TR A++   + ALHD    +            L   V A+S G++     VDLDY ED  
Sbjct: 126 TRVASVLAGYAALHDFADRLIHSGKL--SEWPLVHAVGAVSVGLVGDELRVDLDYAEDKA 183

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKD 236
              D N V TDSG ++E QG AE    +   +  +L +  + +  L+ ++Q+ 
Sbjct: 184 ARADLNVVATDSGLLIEAQGGAEEGPITPAEYVRLLTVGVEAVGALLREVQRQ 236


>gi|157133589|ref|XP_001656263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
 gi|157134369|ref|XP_001663263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
 gi|108870517|gb|EAT34742.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
 gi|108870766|gb|EAT34991.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
          Length = 245

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 100/243 (41%), Gaps = 21/243 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ N++R I     V    +GS  ++ G+T +L       + P    + +   + 
Sbjct: 9   LRLDGRRANELRRIQCKLGVFSQPDGSAYIEQGNTKVLAAVYGPHQAPAKKSSHEEVIVN 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y M   STG R +R     R   +SQE+   + +AL + +        QI +  +V+ 
Sbjct: 69  CQYSMATFSTGERKRRP----RGDRKSQEMTIHLQQALSAAIKTELYPKSQIDVYIEVLM 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGG   A++  A +AL D    +             K +V A +  +    P++D+   
Sbjct: 125 ADGGNYCASVNAATLALIDAGICL-------------KEYVCACTASLAGKIPLMDVSNL 171

Query: 181 EDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           E+ +         +  SG I  ++ S     F  DH   +L  A     ++ K+    + 
Sbjct: 172 EEMSGGPTLTVASLPSSGKIAFMEMSQR---FHLDHLPKVLETALQGCREVQKIIDQAVR 228

Query: 240 NEV 242
             V
Sbjct: 229 EHV 231


>gi|126459546|ref|YP_001055824.1| exosome complex exonuclease Rrp41 [Pyrobaculum calidifontis JCM
           11548]
 gi|254782536|sp|A3MUP1|ECX1_PYRCJ RecName: Full=Probable exosome complex exonuclease 1
 gi|126249267|gb|ABO08358.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum
           calidifontis JCM 11548]
          Length = 246

 Score =  224 bits (573), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 100/243 (41%), Gaps = 22/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           +R  GR  +QMRE+ +       A+GS +V +G T  +       +  P  +     G +
Sbjct: 13  LRADGRAPDQMREVQIQVGTVSNADGSAVVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P ST +  K          R  EI +++  AL   V L      +I +  +++
Sbjct: 73  RVRYHMAPFSTKDERKSPT----PSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEIL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADG TR A++T A +AL D   +M D      +               + G  ++DL+ 
Sbjct: 129 QADGSTRVASLTAASLALADAGIYMRDLVVGVSVGL-------------VDGTVVLDLNG 175

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED+  + D     M +      +Q       ++++ F   L LA      + ++ ++ +
Sbjct: 176 LEDNYGEGDMPVGYMPNLRRFTLLQLDG---AWTREKFLEALGLAVKGAEYVYQVAREAL 232

Query: 239 SNE 241
            N+
Sbjct: 233 KNK 235


>gi|315427141|dbj|BAJ48756.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
           subterraneum]
 gi|315427160|dbj|BAJ48774.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
           subterraneum]
          Length = 246

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +R+ GR+ ++MR++ +   V +  +GS  V+ G T +        +V P  +     G I
Sbjct: 15  LRVDGRRPDEMRKMRMEVGVLEKTDGSAYVELGGTRIYAGVIGPREVHPKHLELPDKGVI 74

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M   S   R            R  E+ ++I  AL +VV L       I I  +VI
Sbjct: 75  NCRYHMASFSVDERK-----PLGMTRREIELSKVIREALETVVFLEEFPRMMIDIFVEVI 129

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTRTA IT A +AL D    M D              +AAI+ G + G  ++D++ 
Sbjct: 130 QADGGTRTAGITAASLALADAGIPMAD-------------MIAAIAVGKVDGVLVLDINE 176

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED   + D    +      IV +Q +      + +     L +A+  +  +  +Q + +
Sbjct: 177 QEDKYGEADMPVAIAPHLNSIVLLQLNGR---MTPEEVDKGLEMAQQAVQKIHHMQIEAL 233

Query: 239 SNE 241
             +
Sbjct: 234 KRK 236


>gi|156388129|ref|XP_001634554.1| predicted protein [Nematostella vectensis]
 gi|156221638|gb|EDO42491.1| predicted protein [Nematostella vectensis]
          Length = 247

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 103/243 (42%), Gaps = 22/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59
           +R+ GR+ +++R++     V   A+GS  ++ G+T  L T     +V    +       +
Sbjct: 12  LRIDGRKASELRKMVCKVGVLSQADGSAYIEMGNTKALATVYGPHEVQNKAKALHDRVLL 71

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             ++GM   STG R K+     R   ++ E+  M+ R   + + ++     QI I   V+
Sbjct: 72  NVQFGMATFSTGERKKKP----RGDRKATELSMMVRRTFEAAILINLYPRSQIDIYVQVL 127

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGG   A I    +AL +                 LK +V+A +   +   P++D++Y
Sbjct: 128 QADGGNHVACINAVTLALINAGI-------------PLKDYVSACTVSFVNDTPLMDINY 174

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E+ST        ++  S  IV  Q  +       D+   +L LA     D+  L    I
Sbjct: 175 LEESTGGPQLTLAILPKSDKIVLFQMDSR---LHMDNMDKVLALAMKGCKDIYVLLHRTI 231

Query: 239 SNE 241
             +
Sbjct: 232 LED 234


>gi|260834851|ref|XP_002612423.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae]
 gi|229297800|gb|EEN68432.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae]
          Length = 246

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 23/244 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59
           R+ GR+ +++R++     V   A+GS  ++ G+T  L T     +V             +
Sbjct: 13  RIDGRRSSELRKVCARMGVFTQADGSAYIEQGNTKALATVYGPHEVRKGRGKIQHDRAVV 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             ++ M   STG R  R     +   RSQE+   + +   +V+        QI I   ++
Sbjct: 73  NCQFSMATFSTGERKSRP----KGDRRSQEMSMHLRQTFEAVIVTELFPRSQIDIYVQIL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGG   A +  A +A+ D    M             K +V A + G +   P++D+ Y
Sbjct: 129 QADGGNYCACVNAATLAVIDAGIPM-------------KDYVCACTAGFIQDSPLLDISY 175

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E+S         +M  S  IV ++ ++       D+   +L+LA     D+  +    +
Sbjct: 176 VEESAGAPFLTVAMMPKSEQIVLLEMNSR---LHADNMEKVLDLATQGCKDVFAVLDRHV 232

Query: 239 SNEV 242
            + V
Sbjct: 233 RDHV 236


>gi|161616815|ref|YP_001590779.1| hypothetical protein SPAB_04634 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161366179|gb|ABX69947.1| hypothetical protein SPAB_04634 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 174

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 90/176 (51%), Positives = 115/176 (65%), Gaps = 2/176 (1%)

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           MLPR+T  R  REA  G+QGGR+ EIQR+I RALR+ VDL  LG   I +DCDVIQADGG
Sbjct: 1   MLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQADGG 60

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
           TRTA+ITGA VAL D L  +   +N    +  +KG VAA+S G++ G  I DL+Y EDS 
Sbjct: 61  TRTASITGACVALADALNKL--VANGKLKTNPMKGMVAAVSVGIVNGEAICDLEYVEDSA 118

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            + D N VMT+ G I+EVQG+AE   FS +    +L LA+  I  ++  QK  + N
Sbjct: 119 AETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN 174


>gi|18313178|ref|NP_559845.1| exosome complex exonuclease Rrp41 [Pyrobaculum aerophilum str. IM2]
 gi|29336868|sp|Q8ZVM9|ECX1_PYRAE RecName: Full=Probable exosome complex exonuclease 1
 gi|18160692|gb|AAL64027.1| 3' exoribonuclease family protein [Pyrobaculum aerophilum str. IM2]
          Length = 246

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 22/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           +R  GR  +QMRE+ +   V   A+GS +V +G T  +       +  P  +     G +
Sbjct: 13  VRADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P ST +  K          R  EI +++  AL   + L      +I +  +++
Sbjct: 73  RVRYHMAPFSTKDERKSPT----PSRREIEISKILREALEPAIVLEQYPRSRIDVFVEIL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADG TR A++T A +AL D   +M D      +               + G  ++DL+ 
Sbjct: 129 QADGSTRVASLTAASLALADAGIYMRDLVVGVSVGL-------------VDGTVVLDLNG 175

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED   + D     M +      +Q       +++D F   LNLA      + ++ +D +
Sbjct: 176 LEDQYGEGDLPLGYMPNLKRFTLLQLDG---AWTRDMFLQALNLAVRGAEYVYQIARDAL 232

Query: 239 SNE 241
            N+
Sbjct: 233 KNK 235


>gi|294668514|ref|ZP_06733611.1| tRNA nucleotidyltransferase [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291309477|gb|EFE50720.1| tRNA nucleotidyltransferase [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 157

 Score =  221 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 74/137 (54%), Positives = 107/137 (78%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  + +R + +T     +A+GS L++ G+T ++ TA+++E VP ++R    GW+TAEYGM
Sbjct: 9   RAADALRAVKITPHFLPHADGSVLIECGNTKVICTASIDESVPPFLRGKGQGWVTAEYGM 68

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP ST  R++REA +G+QGGR+QEIQR+IGR+LR+ VD++ LG RQI+IDCDVIQADGGT
Sbjct: 69  LPASTATRMRREAAAGKQGGRTQEIQRLIGRSLRAAVDMAKLGERQILIDCDVIQADGGT 128

Query: 126 RTAAITGAWVALHDCLQ 142
           RTA+I+GA+VAL   ++
Sbjct: 129 RTASISGAYVALALAMK 145


>gi|159040754|ref|YP_001540006.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167]
 gi|157919589|gb|ABW01016.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167]
          Length = 242

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 99/241 (41%), Gaps = 21/241 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60
           R+ GR   + R +++   V   A GS LV +G+T +L       E +P +I       + 
Sbjct: 15  RVDGRLPEEHRPVTMQVGVLPNANGSALVAYGNTVVLAAVYGPREPIPRYITVPDKAVVR 74

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST +R      +     R  EI +++ +AL +VV L       I +  +V+Q
Sbjct: 75  VRYHMAPFSTDDRK-----NPAPTRREIEISKVVKQALETVVFLEQYPKSTIDVFLEVLQ 129

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG TR  +IT A +AL D    M D              V  +S G +    IVDL+  
Sbjct: 130 ADGSTRVTSITAASLALADAGIPMRDL-------------VVGVSVGKINDTVIVDLNKL 176

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ED+  D D    +    + V +        +        L LA     ++ +  ++V+  
Sbjct: 177 EDNYGDGDLPIAIAYRKNWVLL--MQLDGVWKPSEVKRGLELAFKAAENIYRNMREVLKG 234

Query: 241 E 241
            
Sbjct: 235 R 235


>gi|51473808|ref|YP_067565.1| ribonuclease PH [Rickettsia typhi str. Wilmington]
 gi|51460120|gb|AAU04083.1| Phosphate-dependent exonuclease [Rickettsia typhi str. Wilmington]
          Length = 168

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 93/169 (55%), Positives = 121/169 (71%), Gaps = 2/169 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR SGR+ NQ+R ISL      +AEGSCL+K G+TH++ +AT E  VP ++R    GWIT
Sbjct: 1   MRQSGRKSNQLRPISLELSPLIHAEGSCLIKIGNTHVMCSATCETTVPPFLRGQNRGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEYGM+P ST NR+KRE   G+QGGR+QEIQR+IGR +R V++L  LG RQIIIDCDVI 
Sbjct: 61  AEYGMIPGSTSNRIKREVALGKQGGRTQEIQRLIGRVMRCVINLQKLGERQIIIDCDVIN 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
           ADGGTRT+AITG+++ALH  ++ +     +      L   +AAISCG+ 
Sbjct: 121 ADGGTRTSAITGSYIALHLAIRLLMK--KRILKVNTLISQIAAISCGIY 167


>gi|321465387|gb|EFX76389.1| hypothetical protein DAPPUDRAFT_213979 [Daphnia pulex]
          Length = 246

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 101/245 (41%), Gaps = 23/245 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGW 58
           +R+ GR+ N++R I  +  +   A+GS  ++ G+T +L       ++            +
Sbjct: 12  LRIDGRKPNELRRIRCSLGIFSQADGSAYLEQGNTKVLAAVYGPHEIRGSKSKALHDKAF 71

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  +Y     S G R +R     R   +S E+   +     + +        QI I  +V
Sbjct: 72  VNCQYSTATFSMGERKRRP----RGDRKSTEMSTHLEETFAAAIRTELYPRSQIDIFVEV 127

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QADGG  TA +  A +AL D                 LK  V + +  ++   P+VD++
Sbjct: 128 LQADGGNYTACVNAAMMALVDAGV-------------PLKDTVVSCTASLVKDVPLVDVN 174

Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           + E S    +    ++  SG IV +  +     F  DH   +L+ A     D+  +  ++
Sbjct: 175 HVERSGGSPELVVSILPHSGEIVYMSLTQR---FHIDHLSKVLDTAIKGCKDIGAILNEI 231

Query: 238 ISNEV 242
           +   +
Sbjct: 232 MKGHL 236


>gi|288560609|ref|YP_003424095.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium
           M1]
 gi|288543319|gb|ADC47203.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium
           M1]
          Length = 236

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 95/243 (39%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           +R  GR  +++R I +   V K A+GS  ++ G   +L +     +     +     G I
Sbjct: 11  LRGDGRAYDELRPIKIEAGVLKRADGSAYLEVGGNKILASVYGPRESYIRRLLKPNTGVI 70

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P S  +R +          RS EI ++   ALR  + L +     + +  +VI
Sbjct: 71  RVRYNMAPFSVDDRKR-----PGPDRRSTEISKIAADALRPALMLESFPRSMVDVSIEVI 125

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           +A+GGTR A IT                         +K  V   + G +    ++DL  
Sbjct: 126 EAEGGTRCAGIT-------------AAAVALADAGIPMKDIVVGCAAGKVNDEIVLDLSE 172

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED     D    +M  +G I  +Q        +++ F   L+LA +    + ++Q + +
Sbjct: 173 KEDKEGQADVPIAIMPRTGEITLLQADG---NLTEEEFEEALDLAIEGCMKISEIQHEAL 229

Query: 239 SNE 241
              
Sbjct: 230 KTR 232


>gi|14601412|ref|NP_147949.1| exosome complex exonuclease Rrp41 [Aeropyrum pernix K1]
 gi|29337017|sp|Q9YC03|ECX1_AERPE RecName: Full=Probable exosome complex exonuclease 1
 gi|5105131|dbj|BAA80445.1| exosome complex exonuclease Rrp41 homologue [Aeropyrum pernix K1]
          Length = 246

 Score =  218 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 99/241 (41%), Gaps = 23/241 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60
           R  GR    +R + +   +   A+GS LV+FG T +L       E    +        + 
Sbjct: 17  RHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRFYVLPDRAALR 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST  R      S     R  E+ +++  AL  VV         I +  +V+Q
Sbjct: 77  VRYHMAPFSTDERK-----SPAPSRREIELSKVVREALEPVVLAEEFPRTVIDVFLEVLQ 131

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAA+T A +AL D    M                V  ++ G + G  +VD+D  
Sbjct: 132 ADGGTRTAAVTAASLALADAGIPMRAL-------------VGGVAVGKIQGVLVVDVDEL 178

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED   + D       D G I  +Q +      + + F   L +A   I  +++++K+ I 
Sbjct: 179 EDMYGEADMPVAAAPDIGEITLLQLNG---VLTGEEFRTALAMALRAIDRVVEMEKEAIR 235

Query: 240 N 240
            
Sbjct: 236 K 236


>gi|189239465|ref|XP_975230.2| PREDICTED: similar to exosome complex exonuclease RRP41, putative
           [Tribolium castaneum]
          Length = 249

 Score =  218 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 98/244 (40%), Gaps = 22/244 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R I     V    +GS  ++ G T +L       +V           + 
Sbjct: 13  LRQDGRRADELRRIRCKLGVFTEPDGSAYLEQGLTKVLAAVYGPHQVGFAKAQHDSAVVN 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            ++ M   STG R KR     R   +S EI   + +AL + + +      QI +  +V+ 
Sbjct: 73  CQFSMAVFSTGERKKRP----RGDRKSTEISIHLRQALTAAIKVELYPWTQIDVYVEVLH 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDY 179
           ADGG   A +  A +AL D                 LK +V A +  +     P++D+ +
Sbjct: 129 ADGGIYPACVNAATLALIDAGI-------------PLKEYVCACTASLANNDVPLLDVSH 175

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E+           +  SG IV ++ S     F  DH   +L+ A     D+  +  + +
Sbjct: 176 QEEIIGGPTLTVAALPMSGKIVLMEMSQR---FHVDHLQKVLDKALQGCKDIKSILDEAV 232

Query: 239 SNEV 242
            + +
Sbjct: 233 KSHI 236


>gi|289607155|emb|CBI60875.1| unnamed protein product [Sordaria macrospora]
          Length = 148

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 80/127 (62%), Positives = 103/127 (81%)

Query: 8   ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLP 67
            ++MR I++    +++AEGSCL+ FGDT +L TA+LEE++P W+R    GW+TAEYGMLP
Sbjct: 22  PDEMRPITIETNFTRHAEGSCLIGFGDTKVLVTASLEERLPPWLRGKGEGWVTAEYGMLP 81

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
           R+T  R  REA  G+Q GR+QEIQR+IGR+LR+VVDL ALG RQI +DCDVIQADGGTRT
Sbjct: 82  RATHTRGSREAAKGKQSGRTQEIQRLIGRSLRAVVDLKALGERQITLDCDVIQADGGTRT 141

Query: 128 AAITGAW 134
           A+I+GAW
Sbjct: 142 ASISGAW 148


>gi|257076444|ref|ZP_05570805.1| exosome complex exonuclease Rrp41 [Ferroplasma acidarmanus fer1]
          Length = 240

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 108/242 (44%), Gaps = 22/242 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR  N+MR I +   V + A+GS  +++G   ++    + E  P   +N     + 
Sbjct: 13  LRLDGRSLNEMRPIKIQTGVVERADGSAFIEWGANKIIVAVYVREAYPKHAQNIDRAIVK 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           A Y M   S   R +          R+ EI +++  AL S + L  L   +I +   V++
Sbjct: 73  ARYNMSGYSVEERKR-----PGPDRRTMEISKVVSEALSSAIVLEKLPRAEIDVFIQVLE 127

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A++T + VA+ D    M D              V   + G   G  ++DL   
Sbjct: 128 ADAGTRIASLTASSVAVADAGVPMRDL-------------VVGCTAGKADGKIVLDLSKD 174

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+    D    ++  +G +V +Q   +    +++ F    ++  D +  + +LQ++ + 
Sbjct: 175 EDNFGQADIPMAILPRTGKVVLLQLDGD---VTEEEFNEATSMMMDAMPRISELQRNALM 231

Query: 240 NE 241
           ++
Sbjct: 232 SK 233


>gi|270010551|gb|EFA06999.1| hypothetical protein TcasGA2_TC009968 [Tribolium castaneum]
          Length = 251

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 98/246 (39%), Gaps = 24/246 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGW 58
           +R  GR+ +++R I     V    +GS  ++ G T +L       +V             
Sbjct: 13  LRQDGRRADELRRIRCKLGVFTEPDGSAYLEQGLTKVLAAVYGPHQVRGSRSKAQHDSAV 72

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  ++ M   STG R KR     R   +S EI   + +AL + + +      QI +  +V
Sbjct: 73  VNCQFSMAVFSTGERKKRP----RGDRKSTEISIHLRQALTAAIKVELYPWTQIDVYVEV 128

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDL 177
           + ADGG   A +  A +AL D                 LK +V A +  +     P++D+
Sbjct: 129 LHADGGIYPACVNAATLALIDAGI-------------PLKEYVCACTASLANNDVPLLDV 175

Query: 178 DYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            + E+           +  SG IV ++ S     F  DH   +L+ A     D+  +  +
Sbjct: 176 SHQEEIIGGPTLTVAALPMSGKIVLMEMSQR---FHVDHLQKVLDKALQGCKDIKSILDE 232

Query: 237 VISNEV 242
            + + +
Sbjct: 233 AVKSHI 238


>gi|213514504|ref|NP_001134304.1| Exosome complex exonuclease RRP41 [Salmo salar]
 gi|209732228|gb|ACI66983.1| Exosome complex exonuclease RRP41 [Salmo salar]
          Length = 245

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 96/244 (39%), Gaps = 23/244 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGWI 59
           RL GR+  ++R++     V   A+GS  ++ G+T  L       +V      T      I
Sbjct: 13  RLDGRKAAELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRGSRSKTLHDRAVI 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y M   ST  R +R     +    S E+   + +   + V  +     QI I   ++
Sbjct: 73  NCQYSMATFSTAERKRRPHGDRK----STEMSLHLKQTFEAAVLTNLYPRSQIDIYVKIL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           Q+DGG  +A +  A +A+ D    M D             +V A + G +   P+ DL +
Sbjct: 129 QSDGGNYSACVNAATLAVVDAGIPMRD-------------YVCACTAGFVDETPLADLCH 175

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E+S          +   GHI  +Q  A      QDH   ++  A      + K+  +V+
Sbjct: 176 AEESGGGTSLALALLPRGGHIALLQMDAR---LHQDHLETLMEAAMTACKGVSKVLDEVV 232

Query: 239 SNEV 242
              +
Sbjct: 233 RQHL 236


>gi|225715268|gb|ACO13480.1| Exosome complex exonuclease RRP41 [Esox lucius]
          Length = 245

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 96/244 (39%), Gaps = 23/244 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGWI 59
           RL GR+  ++R++     V   A+GS  ++ G+T  L       +V M    T      I
Sbjct: 13  RLDGRKATELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRMSRSKTLHDRAVI 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y M   ST  R +R     +    S E+   + +   + V  +     QI I   ++
Sbjct: 73  NCQYSMATFSTAERKRRPHGDRK----STEMSLHLKQTFEAAVLTNLYPRSQIDIYVKIL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           Q+DGG  +A +  A +A+ D    M D             +V A + G +   P+ DL +
Sbjct: 129 QSDGGNYSACVNAATLAVIDAGIPMRD-------------YVCACTAGFVDETPLADLCH 175

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E+S          +   GHI  +Q  A      QDH   ++  A      + K+   V+
Sbjct: 176 AEESGGGTSLALALLPRGGHIALLQMDAR---LHQDHLETLMEAAMTACKGVSKVLDQVV 232

Query: 239 SNEV 242
              +
Sbjct: 233 RQHL 236


>gi|170290983|ref|YP_001737799.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170175063|gb|ACB08116.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 248

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 61/243 (25%), Positives = 102/243 (41%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +R  GR  ++MR I +   V + A+GS  V++G   +L       +V P  +       I
Sbjct: 18  IRTDGRLPHEMRPIKMMVGVLEKADGSAFVEWGGNRILAAVFGPREVHPKHMVLPDRALI 77

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
            A Y M P ST  R +          RS E+ ++I  AL+  +         I I  +V+
Sbjct: 78  RARYNMAPFSTPERRR-----PGPDRRSIELSKVIREALKPAIFAENYPGSVIDIFVEVL 132

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           ++D GTR A I                          ++G V+A S G +  + +VD ++
Sbjct: 133 RSDAGTRVAGIN-------------AASLALASAGVAMRGLVSACSVGRVGSFIVVDPNH 179

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED   D D    +M +S  I  +Q      T S++ F   L+L +  I  + ++QK+ +
Sbjct: 180 DEDMWGDSDMPLAMMMESEEITLLQADG---TLSEEEFKEALDLGRRAIRFVYEVQKEAL 236

Query: 239 SNE 241
              
Sbjct: 237 KRP 239


>gi|41152247|ref|NP_957033.1| exosome complex exonuclease RRP41 [Danio rerio]
 gi|37747963|gb|AAH59525.1| Exosc4 protein [Danio rerio]
 gi|46403217|gb|AAS92628.1| exosome complex exonuclease RRP41 [Danio rerio]
 gi|157423431|gb|AAI53618.1| Exosc4 protein [Danio rerio]
          Length = 245

 Score =  214 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 23/244 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59
           RL GR+  ++R++     V   A+GS  ++ G+T  L       ++             I
Sbjct: 13  RLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKALAVVYGPHEIRGSRSKSLHDRAII 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y M   ST  R +R     +    S E+   + +   + V        QI I   ++
Sbjct: 73  NCQYSMATFSTAERKRRPHGDRK----SSEMSLHLKQTFEAAVLTELYPRSQIDIYVKIL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGG  +A +  A +AL D    M D             +V A S G +   P+ DL +
Sbjct: 129 QADGGNYSACVNAATLALVDAGIPMRD-------------YVCACSAGFVEDTPLADLCH 175

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E+S          +  SG+I  +Q  A      QDH   ++  A     +  K+   V+
Sbjct: 176 AEESGGGTALALALLPRSGNIALLQMDAR---LHQDHLDTLMEAAMTACKEFSKVLDSVV 232

Query: 239 SNEV 242
              +
Sbjct: 233 RQHL 236


>gi|330803994|ref|XP_003289985.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum]
 gi|325079933|gb|EGC33511.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum]
          Length = 247

 Score =  214 bits (546), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 107/244 (43%), Gaps = 24/244 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59
           +R+ GR+ N++R I++   VS  A+GS   + G+T ++       ++ +  ++      +
Sbjct: 12  LRIDGRRANELRRINIQMGVSNRADGSAYYEQGNTKIIAAVYGPREISVSGQSIFDRAIV 71

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             E+     ST  R  ++   G     + EI  ++ +A  S +        QI I   V+
Sbjct: 72  KCEFATSSFSTTERKPQQKTKG--DRATTEISNLVKQAFESTIQTHLYPRSQINIYIQVL 129

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           Q+DGG + AAI  + +AL D    M             K  V A+S   + G  ++DL++
Sbjct: 130 QSDGGLKAAAINASTLALIDAGISM-------------KDFVCAVSTSCIDGVAVLDLNH 176

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E+ +   D    +    G ++ +   ++     QD F ++L L +     +  +    +
Sbjct: 177 IEERSGGPDCLLSIQPQIGGVISLNMDSK---VPQDLFESVLELGEKGCKKIFSI----L 229

Query: 239 SNEV 242
           S++V
Sbjct: 230 SDQV 233


>gi|291533813|emb|CBL06926.1| ribonuclease PH [Megamonas hypermegale ART12/1]
          Length = 153

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/141 (53%), Positives = 101/141 (71%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+  R  +Q+R   +T+   KY  GS L++ G+T ++  AT+++ VP ++R +  GW+ A
Sbjct: 3   RIDRRNADQLRRFKITKYFQKYPAGSVLIETGNTKVICAATIQDGVPSFLRGSGTGWLNA 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY +LP +T  R  REA  GRQ GR+QEIQR+IGR LRSV+D  ALG R +IIDCDVIQA
Sbjct: 63  EYSLLPSATLTRSPREASRGRQNGRTQEIQRLIGRCLRSVMDFKALGERTVIIDCDVIQA 122

Query: 122 DGGTRTAAITGAWVALHDCLQ 142
           DGGTRTA+ITGA+VAL + L 
Sbjct: 123 DGGTRTASITGAFVALAEALA 143


>gi|241119397|ref|XP_002402568.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
           [Ixodes scapularis]
 gi|215493342|gb|EEC02983.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
           [Ixodes scapularis]
          Length = 246

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 99/236 (41%), Gaps = 25/236 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT---KHGW 58
           RL GR+ N+ R+I     V   A+GS  ++ G+  +L       + P   R+        
Sbjct: 13  RLDGRKPNEQRKIDCRLGVFSQADGSAYIEQGNAKVLAAVYGPHE-PRGNRSRALHDRVL 71

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  ++ M   ST  R +R     R   +SQE+   I +   + +        QI I  +V
Sbjct: 72  VNCQFSMATFSTFERKRRP----RGDKKSQEMTLHIQQTFEATILTQLYPRSQIDIFVEV 127

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +Q+DGGT +  +  A +AL D    +             K +V A S G + G P+VD+ 
Sbjct: 128 LQSDGGTLSVCVNAATLALIDAGIAL-------------KDYVCACSVGFIDGVPLVDIS 174

Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
             E+S    +    V+  S  IV ++ S+       D+   ML+ A     DL  +
Sbjct: 175 SIEESNRGPELTVAVLPKSQQIVLLEMSSR---VHVDNLEKMLDAAMKGCTDLHAI 227


>gi|242005051|ref|XP_002423388.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus
           corporis]
 gi|212506432|gb|EEB10650.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus
           corporis]
          Length = 253

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 102/245 (41%), Gaps = 23/245 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59
           +RL GR+ +++R+I     V    +GS  ++ G+T +L       +V    +       I
Sbjct: 10  LRLDGRRASELRQIRCKLGVFSQPDGSAYIEMGNTKVLAAVYGPHQVRGRTKPLLDAAVI 69

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y     ST  R KR     R   +SQE    + +AL + +        QI I  +V+
Sbjct: 70  NCQYSSAVFSTEERKKRP----RGDKKSQEKSMHLCQALSAAIKTELYPKSQIDIFVEVL 125

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLD 178
           Q+DGG+ +AA+  + +AL D                 LK +V + +  +     P+VD+ 
Sbjct: 126 QSDGGSFSAAVNVSTLALIDAGI-------------PLKEYVTSCTASLANENIPLVDVT 172

Query: 179 YGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           Y E+S          +  +  I  ++ S     F  DH   +LN A +   ++  +  + 
Sbjct: 173 YLEESCGGPTLTIATLPLAKKIALMEMSQR---FHLDHLEKVLNTAMEGCKNIQVILNEA 229

Query: 238 ISNEV 242
           +   +
Sbjct: 230 VKRHI 234


>gi|145592134|ref|YP_001154136.1| exosome complex exonuclease Rrp41 [Pyrobaculum arsenaticum DSM
           13514]
 gi|254782535|sp|A4WM67|ECX1_PYRAR RecName: Full=Probable exosome complex exonuclease 1
 gi|145283902|gb|ABP51484.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 246

 Score =  211 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 22/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           +R  GR  +QMRE+ ++  V   A+GS +V +G T  +       +  P  +     G +
Sbjct: 13  VRADGRLPDQMREVKISVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P ST +  K          R  EI +++  AL   V L      +I +  ++I
Sbjct: 73  RVRYHMAPFSTKDERKSPT----PSRREIEISKVLREALEPAVLLEQYPRSRIDVFIEII 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADG TR A++T A +AL D   +M D      +  V    V  +             + 
Sbjct: 129 QADGSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGVVVLDL-------------NG 175

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED+  + D     M +    V +Q       + ++ F   LNLA      + ++ +D +
Sbjct: 176 LEDNYGEGDLPVGYMPNLKRFVLLQLDG---AWKREVFLQALNLAVKGAEYVYQIARDAL 232

Query: 239 SNE 241
            N+
Sbjct: 233 KNK 235


>gi|320167599|gb|EFW44498.1| exosome component 4 [Capsaspora owczarzaki ATCC 30864]
          Length = 252

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 62/240 (25%), Positives = 95/240 (39%), Gaps = 22/240 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59
           +R+ GR+ N++R I     V   A+GS  ++ G+T +L T     +V    +       I
Sbjct: 14  LRIDGRRPNELRRIQARVGVFMQADGSAYIEQGNTKILATVYGPHEVSRKNKPLHDRAII 73

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             EY +   +T  R K      R   R+ ++   +  A    V        QI I   V+
Sbjct: 74  NCEYRVASFATAERKK----PVRTDKRALDLAAAVRGAFEGAVMTQLYPRSQIDIFLQVL 129

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           Q+DGG R   I  A +AL D    M             K  V A S G +   P++D++Y
Sbjct: 130 QSDGGNRAVCINAATLALMDAGIAM-------------KDFVCACSVGCIDDTPLLDINY 176

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS    D    V+  S   V V+  +       D F  +L LA D    +  +    +
Sbjct: 177 IEDSAGGPDLTVAVLARSRKTVLVEMDSR---LHIDRFDDVLRLAIDGCQAIHSILDSAM 233


>gi|213417938|ref|ZP_03351026.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 148

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 83/149 (55%), Positives = 104/149 (69%), Gaps = 2/149 (1%)

Query: 38  LTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA 97
           L TA++EE VP +++    GWITAEYGMLPR+T  R  REA  G+QGGR+ EIQR+I RA
Sbjct: 2   LCTASIEEGVPRFLKGQGQGWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARA 61

Query: 98  LRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL 157
           LR+ VDL  LG   I +DCDVIQADGGTRTA+ITGA VAL D L  +   +N    +  +
Sbjct: 62  LRAAVDLKTLGEFTITLDCDVIQADGGTRTASITGACVALADALNKL--VANGKLKTNPM 119

Query: 158 KGHVAAISCGMLCGYPIVDLDYGEDSTID 186
           KG VAA+S G++ G  I DL+Y EDS  +
Sbjct: 120 KGMVAAVSVGIVNGEAICDLEYVEDSAAE 148


>gi|62858329|ref|NP_001016436.1| exosome component 4 [Xenopus (Silurana) tropicalis]
 gi|89273823|emb|CAJ82158.1| exosome component 4 [Xenopus (Silurana) tropicalis]
 gi|111598409|gb|AAH80330.1| LOC549190 protein [Xenopus (Silurana) tropicalis]
          Length = 249

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 93/244 (38%), Gaps = 23/244 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L       ++             +
Sbjct: 13  RVDGRKAGELRKIRARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSKMLHDRSVV 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y M   STG R +R     +    S E+   + +   + +        QI I   ++
Sbjct: 73  NCQYSMATFSTGERKRRPHGDRK----SSEMTLHLKQTFEAAILTQLYPRSQIDIYVQIL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGG     +  A +A+ D    M D             +V A S G +   P+ DL Y
Sbjct: 129 QADGGNYCTCVNAATLAVIDAGIPMRD-------------YVCASSAGFIEDTPLADLSY 175

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E++          +  S  I  ++ ++      +DH   +++ A     D+  +   V+
Sbjct: 176 VEEAAGGPQLALALLPKSDQIALLEMNSR---LHEDHLERVMDAASKACKDVYAVLDQVV 232

Query: 239 SNEV 242
              +
Sbjct: 233 REHL 236


>gi|156937005|ref|YP_001434801.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis
           KIN4/I]
 gi|156565989|gb|ABU81394.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis
           KIN4/I]
          Length = 241

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 91/242 (37%), Gaps = 23/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWIT 60
           R  GR    +R + +   V   A+GS  ++ G T ++       + P   +       I 
Sbjct: 15  RHDGRGPADLRPLEMKVGVLYNADGSAWLRIGGTEVVAAVYGPREPPMRGMVLPDRAVIR 74

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST  R      +     R  E+ ++I  AL + +         I +  +VI+
Sbjct: 75  CRYHMAPFSTDERK-----NPAPSRREIELSKVIREALEATILTHLFPRTIIDVFIEVIR 129

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRT                             +KG VA ++ G + G  ++D+D  
Sbjct: 130 ADGGTRT-------------AALTAASLALADAGIPMKGLVAGVAVGKVQGTLVLDIDEL 176

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED   + D     +     IV +Q +          F   L LA + I  +  +QK V++
Sbjct: 177 EDMYGEADMPVAAIPSLNKIVLLQLNG---VLEPREFPQALKLAWEGIKKIHAMQKKVLA 233

Query: 240 NE 241
            +
Sbjct: 234 EK 235


>gi|118576719|ref|YP_876462.1| RNase PH [Cenarchaeum symbiosum A]
 gi|259645399|sp|A0RXU1|ECX1_CENSY RecName: Full=Probable exosome complex exonuclease 1
 gi|118195240|gb|ABK78158.1| RNase PH [Cenarchaeum symbiosum A]
          Length = 243

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 92/243 (37%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +R  GR+ ++ R + +T  V   A GS  ++FGD  +L        V P  +  T+ G +
Sbjct: 16  IRCDGRKISETRRVEITAGVLNNANGSAYIEFGDNKILAGIFGPRDVHPKHMVRTETGIL 75

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P S   R K          R  EI ++I  AL   + L       + +  +V+
Sbjct: 76  RCRYHMSPFSVSERKK-----PAPSRREIEISKVIKEALEPSLMLEQFPRTAVDVFIEVL 130

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGG+R                              ++  V+A + G +    ++D++ 
Sbjct: 131 QADGGSRC-------------AALAAASVALADAGIPMRDMVSACAAGKVADTIVLDVNN 177

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED     D     M +   +  +Q        + D +     +A D    + ++QK  +
Sbjct: 178 EEDQAGQADMPVGYMPNLDQVTLIQLDG---VLTPDEYSRCAAMAIDGCKQVYEVQKKAL 234

Query: 239 SNE 241
           S+ 
Sbjct: 235 SDR 237


>gi|255644780|gb|ACU22892.1| unknown [Glycine max]
          Length = 190

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 19/199 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHGWI 59
           +RL GR+  +MR+I         A+GS + + G+T ++       +V    +  + H  +
Sbjct: 9   LRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRNQQISSHALV 68

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             EY M   STG+R+++     +   RS EI  +I + + + +    L   QI I   V+
Sbjct: 69  RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLLPRSQIDIYVQVL 124

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTR+A I  A +AL D    M D              V + S G L   P++DL+Y
Sbjct: 125 QADGGTRSACINAATLALADAGIPMRDL-------------VTSCSAGYLNSTPLLDLNY 171

Query: 180 GEDSTIDVDANF-VMTDSG 197
            EDS    D    ++   G
Sbjct: 172 VEDSAGGPDVTLGILPKLG 190


>gi|329766296|ref|ZP_08257843.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia
           SFB1]
 gi|329137198|gb|EGG41487.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia
           SFB1]
          Length = 245

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 97/243 (39%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +R  GR+ ++ R I +     K A+GS  ++FGD  +L        V P  + NT  G +
Sbjct: 16  IRCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTDTGIL 75

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
              Y M P S   R      +     R  EI ++I  AL   V L       + +  +V+
Sbjct: 76  RVRYHMEPFSVTERK-----NPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVL 130

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTR AA++ A VAL D    M D              VAA + G      I+D++ 
Sbjct: 131 QADGGTRCAALSAASVALADAGIPMRD-------------MVAACAAGKAADTIILDVNN 177

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            ED     D     M     I  +Q        +   +   +         + +LQK  +
Sbjct: 178 EEDQAGQADMPIGYMPSLEKITLLQLDG---VLTPAEYKKCVETGIHGCKIVYELQKKAL 234

Query: 239 SNE 241
           +++
Sbjct: 235 TDK 237


>gi|308512717|gb|ADO33012.1| exosome complex exonuclease RRP41 [Biston betularia]
          Length = 245

 Score =  208 bits (529), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 96/246 (39%), Gaps = 24/246 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ N++R I     V K  +GS  ++ G+T +L       +      + +   + 
Sbjct: 8   LRLDGRRPNELRRIRCKLGVFKQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSNEGVVVN 67

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y M   STG R  R     +    S E+   + +AL + +        QI +  +V+Q
Sbjct: 68  CQYSMATFSTGERKNRPHGDRK----STEMSLHLRQALTAAIKTELYPRSQIDVYVEVLQ 123

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPIVDL 177
           ADG      +  A +AL D                 L+ +  A S  M       P++D+
Sbjct: 124 ADGSCYCVCVNAATLALIDAGI-------------PLRAYACACSASMSWRDDAEPLLDV 170

Query: 178 DYGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            + E++   V      +  +G I  ++ S        D+F  +L+ A     D+  +   
Sbjct: 171 GHVEEAAGGVCLTVASLPSTGRIALLEMS---HRLHMDYFDIVLSRAMQGCRDIEVVLDK 227

Query: 237 VISNEV 242
            +   +
Sbjct: 228 AVREHL 233


>gi|148228965|ref|NP_001088679.1| exosome component 4 [Xenopus laevis]
 gi|56270437|gb|AAH87307.1| LOC495942 protein [Xenopus laevis]
          Length = 249

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 91/243 (37%), Gaps = 23/243 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L       ++             I
Sbjct: 13  RVDGRKAGELRKIRARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSKMLHDRCVI 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y M   STG R +R     +    S E+   + +   + +        QI I   ++
Sbjct: 73  NCQYSMATFSTGERKRRPHGDRK----SSEMTLHLKQTFEAAILTQLYPRSQIDIYVQIL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGG     +  A +A+ D    M D             +V A S G +   P+ DL Y
Sbjct: 129 QADGGNYCTCVNAATLAVIDAGIPMRD-------------YVCACSAGFIEDTPLADLSY 175

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E++T         +  S  I  ++ ++      +DH   ++        D+  +   V+
Sbjct: 176 VEEATGGPQLALALLPKSDQIALLEMNSR---LHEDHLERVMEAVSKACKDVYTVLDQVV 232

Query: 239 SNE 241
              
Sbjct: 233 REH 235


>gi|302348936|ref|YP_003816574.1| Probable exosome complex exonuclease 1 [Acidilobus saccharovorans
           345-15]
 gi|302329348|gb|ADL19543.1| Probable exosome complex exonuclease 1 [Acidilobus saccharovorans
           345-15]
          Length = 242

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 23/243 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60
           RL GR  ++MR + +   V   A+GS +V +G T +L       E +  +        + 
Sbjct: 15  RLDGRLPDEMRPVDMKVGVLSNADGSAIVSYGKTKVLAAVYGPREPLQKYTVLPDRASLF 74

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST  R      S     R  EI +++  AL  VV         I +  +V+Q
Sbjct: 75  VRYHMAPFSTEERK-----SPVPTRREVEISKVLREALEPVVITELFPRTVIEVYVEVLQ 129

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           +DGGTRTA+ T A +AL D    M                VA ++ G +    ++DL+  
Sbjct: 130 SDGGTRTASATAASLALADAGIPMRAL-------------VAGVAIGKVDNVVVLDLNEP 176

Query: 181 EDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  + D   V   D G I   Q +      + +     L++A   I++L++ +K  + 
Sbjct: 177 EDNFGEADMPVVAAPDLGLITLFQLNG---VMTVEETQKGLDMALKAISELVEKEKQTLR 233

Query: 240 NEV 242
           + +
Sbjct: 234 SSI 236


>gi|225023880|ref|ZP_03713072.1| hypothetical protein EIKCOROL_00746 [Eikenella corrodens ATCC
           23834]
 gi|224943354|gb|EEG24563.1| hypothetical protein EIKCOROL_00746 [Eikenella corrodens ATCC
           23834]
          Length = 167

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 83/158 (52%), Positives = 110/158 (69%), Gaps = 2/158 (1%)

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
           ++REA  G+Q GR+QEIQR+IGR+LR+ VDLS LG RQI+IDCDVIQADGGTRTA+ITGA
Sbjct: 1   MRREAAQGKQSGRTQEIQRLIGRSLRAAVDLSQLGERQILIDCDVIQADGGTRTASITGA 60

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
           +VALH  +  +            ++  VAA+S G++ G P++DLDY EDS  D D N VM
Sbjct: 61  YVALHLAIGKLLAAGKL--AHNPIREAVAAVSLGIVGGVPLLDLDYPEDSGCDSDINLVM 118

Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           T SG+I+E+QG+AE   FS      +L L +  I +L+
Sbjct: 119 TASGNIIEIQGTAEGDAFSPAALTQLLALGQKGIVELL 156


>gi|328865596|gb|EGG13982.1| Exosome complex exonuclease rrp41 [Dictyostelium fasciculatum]
          Length = 244

 Score =  205 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 98/242 (40%), Gaps = 21/242 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR+ N++R +++   V   A+GS   + G+T +        +            I 
Sbjct: 12  LRIDGRRSNEIRRLNMRMGVLNRADGSSYYEQGNTKITVAIYGPHESTTQKSLFDRASIK 71

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            E+ M   ST  R     V  R    + E   +I +A  S V        QI I   V+Q
Sbjct: 72  CEFAMSSFSTSERK----VKSRFDKTAYETSTLIKQAFESTVLTHLFPRSQIDIYVQVLQ 127

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           +DGG ++AAI    +A+ D    M D             +V A S   + G  ++DL++ 
Sbjct: 128 SDGGLKSAAINAVTLAMIDAGIPMRD-------------YVCACSATFIEGSALMDLNHM 174

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           E+ +   D    +    G ++ +      +   Q+ F ++L++A      +  L ++ + 
Sbjct: 175 EERSGGADLLLSIHPQLGGVISINM---ESKVPQEMFESVLDMALAGCKKIYYLLQEQVK 231

Query: 240 NE 241
             
Sbjct: 232 KH 233


>gi|168063069|ref|XP_001783497.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664987|gb|EDQ51687.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 246

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 99/240 (41%), Gaps = 22/240 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWI 59
           +RL GR+  +MR +     V   A+GS L   G+T ++       +V     +      +
Sbjct: 11  LRLDGRRPPEMRHLHAVVGVVPSADGSALFHMGNTQVMAVVYGPHEVHNKAHQLHDKALV 70

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             EY M   STG         G+   R+ E+  +IG+ L + +    L   QI I   V+
Sbjct: 71  RCEYSMAAFSTGE----RRRRGKTDRRATELSLVIGQTLEAAIMTHLLPRSQIDIYVQVL 126

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTR A I  A +AL D    M D              V + + G L   P++DL+Y
Sbjct: 127 QADGGTRAACINAASMALADAGIPMRDL-------------VVSCAAGYLNSTPLLDLNY 173

Query: 180 GEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS    D           +  +Q  ++    S + F  +L LA +    +    ++ +
Sbjct: 174 QEDSGGGPDLVVGYFPKLEKLSLLQMDSK---VSIETFEKVLELATEGAKAVATFTREKL 230


>gi|126322962|ref|XP_001364428.1| PREDICTED: similar to Chain G, Structure Of The Human Rna Exosome
           Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42,
           Csl4, Rrp4, And Rrp40 [Monodelphis domestica]
          Length = 245

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK--VPMWIRNTKHGWI 59
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L       +              +
Sbjct: 13  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEMRGSRSRALPDRALV 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y M   STG R +R     +    + E+   + +   + +        QI I   V+
Sbjct: 73  NCQYSMATFSTGERKRRPHGDRK----ACEMGLQLRQTFEAAILTQLYPRSQIDIYVQVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGG   A +  A +A+ D    M D              V A S G + G  + DL +
Sbjct: 129 QADGGNYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTALADLSH 175

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E++          +  SG +  ++  A      +DH   +L +A     D+  L   V+
Sbjct: 176 VEEAAGGPQLALALLPASGQLALLEMDAR---LHEDHLQQVLEVASQAARDVHALLDRVV 232

Query: 239 SNEV 242
              V
Sbjct: 233 RQHV 236


>gi|254468299|ref|ZP_05081705.1| ribonuclease PH [beta proteobacterium KB13]
 gi|207087109|gb|EDZ64392.1| ribonuclease PH [beta proteobacterium KB13]
          Length = 161

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 72/160 (45%), Positives = 106/160 (66%), Gaps = 2/160 (1%)

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
           ++REA  G+Q GR+QEIQR+IGR+LR+++DL+ +G   + +DCDV+QADGGTRTA+ITGA
Sbjct: 1   MQREAARGKQSGRTQEIQRLIGRSLRAMIDLTKIGENTLQVDCDVLQADGGTRTASITGA 60

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
             A+ D +++M     K      +   +AAIS G++    +VDLDY EDS  + D N VM
Sbjct: 61  ACAIEDAVEYM--LKAKLISESPIIKKIAAISAGIVDSKVLVDLDYDEDSNCETDMNIVM 118

Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           T+    +E+QG+AE   FSQD    +L L+ D I  + ++
Sbjct: 119 TEDKQFIEIQGTAEGNPFSQDELNEILTLSSDAIQSIFQI 158


>gi|71981632|ref|NP_001021274.1| EXOSome (multiexonuclease complex) component family member
           (exos-4.1) [Caenorhabditis elegans]
 gi|6226696|sp|Q17533|EXOS4_CAEEL RecName: Full=Putative exosome complex component RRP41; AltName:
           Full=Ribosomal RNA-processing protein 41
 gi|3873830|emb|CAA97771.3| C. elegans protein B0564.1a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 240

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 101/235 (42%), Gaps = 25/235 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR+  Q+R I+    +++ AEGSC ++ G+T +L       +     R      I 
Sbjct: 9   FRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIV 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y     S   R  R     R   +S EI R++ +A  SV+   A    Q+ I C+VIQ
Sbjct: 69  CQYSATKFSGLERKNRT----RGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
            DG    A +    +AL D    M             KG  +A +CG++ G PIVDL   
Sbjct: 125 GDGSNLAACVNATSLALADAGIPM-------------KGIASAATCGVVDGKPIVDLTSR 171

Query: 181 EDSTIDVD---ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           E++ +      A     D   +VE+Q          DH   +++ AK   AD+ +
Sbjct: 172 EETDLLPRVTLATICGRDEVILVELQNR-----LHIDHLSTVMDAAKATCADVYE 221


>gi|326422491|gb|EGD71888.1| 3' exoribonuclease [Candidatus Parvarchaeum acidophilus
           ARMAN-5_'5-way FS']
          Length = 236

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 27/244 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           R   R  N++R +     V   A+GS   + G+T  +      E+V P  I     G I 
Sbjct: 5   RFDKRAFNELRPMEAETGVVPNAKGSARFRIGNTEAIAAVYGPEEVKPRHIEKVDRGVIV 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y MLP S  +R            R  EI ++I  AL   + L  +    I +   + Q
Sbjct: 65  CKYDMLPFSVPDR-----AKPGMDRRDIEISQVITNALNRAIILEDMPRAMINVRVYITQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A++T A +A  D    M D              VAA++ G +  +  +DL   
Sbjct: 120 ADAGTRCASLTAASMACADAGLPMRDL-------------VAAVAAGKIGDHVCLDLSKE 166

Query: 181 EDST----IDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           E+         D     +     I+ +Q        S+D    ++ + K+    + +L+K
Sbjct: 167 EEDFHEGEGATDVPIAFLPSKNEILLLQLDGR---VSRDELKKVIEVGKEGAMKIYELEK 223

Query: 236 DVIS 239
           + + 
Sbjct: 224 EALK 227


>gi|269986356|gb|EEZ92654.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum ARMAN-4]
 gi|326422442|gb|EGD71841.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum
           ARMAN-4_'5-way FS']
          Length = 235

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 96/243 (39%), Gaps = 26/243 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
           R   R+ +++R +     +   A+GS   K G+T  +      E+V P  I     G I 
Sbjct: 5   RFDKRKFDELRPMEAETGIIPNAKGSARFKIGNTEAIAAVYGPEEVKPRHIEKVNKGIIV 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y MLP S  +R            R  EI ++I  AL   V L  +    + +   + Q
Sbjct: 65  CKYDMLPFSVPDR-----ARPGMDRRDIEISQVITNALNRAVILEEMPRAMVNVRIYITQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD GTR A++T A +A  D    M D              VAA++ G +     +DL   
Sbjct: 120 ADAGTRCASLTAASMACADAGLPMRDL-------------VAAVAAGKIGDSICLDLTKE 166

Query: 181 EDST---IDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           E+        D     +     IV +Q   +    +++    ++ + K    ++ +L+K 
Sbjct: 167 EEDFHEGGATDVPIALLPSKNEIVLLQLDGK---VTREELKKVIEMGKKGAMEIYELEKA 223

Query: 237 VIS 239
            + 
Sbjct: 224 ALK 226


>gi|324522716|gb|ADY48116.1| Exosome complex exonuclease RRP41 [Ascaris suum]
          Length = 249

 Score =  201 bits (513), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 101/247 (40%), Gaps = 27/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59
            RL GR+ +Q+R I+    V   A+GS  ++ G+T +L       +     R       +
Sbjct: 9   FRLDGRKPHQIRNINYKLGVYTQADGSAYLEQGNTKVLCAVYGPHEPRQRNRTQEDRCTV 68

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y M   ST  R +R     R   RS E  R++ +A  + + +      QI I C+++
Sbjct: 69  NCQYSMATFSTNERKERP----RGDRRSMEFARLMEKAFETAILVENYPHAQIDIFCELL 124

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLD 178
           QADG    A +  A +AL D    M             +G VAA SC   L G P  D+ 
Sbjct: 125 QADGSHLAACVNAATLALADAGVPM-------------RGLVAAASCACALDGTPCADVS 171

Query: 179 YGEDSTIDVD---ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
             E+S +      AN    D   + E+Q         +DH   ML  A+   + +    +
Sbjct: 172 AREESNVMPRITIANISGMDEIILTELQNR-----LHRDHLIPMLQCARMAASQVHSCLE 226

Query: 236 DVISNEV 242
             +S  +
Sbjct: 227 VAVSAHI 233


>gi|47848476|dbj|BAD22331.1| putative exosome component 4 [Oryza sativa Japonica Group]
 gi|47848647|dbj|BAD22495.1| putative exosome component 4 [Oryza sativa Japonica Group]
          Length = 245

 Score =  201 bits (513), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 64/265 (24%), Positives = 104/265 (39%), Gaps = 52/265 (19%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW---------- 50
            R+ GR+ N+MR++     V   A+GS L + G+T ++       +V             
Sbjct: 10  FRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVAAHPDYWLVRLIS 69

Query: 51  ---IRNTKHGWITAEYG--------MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR 99
               R    G    +          M   STG+R ++     +   RS EI  +I + + 
Sbjct: 70  KKAKREGLRGRSRTKVSKSTAKMLWMADFSTGDRRRKP----KGDRRSTEISLVIRQTME 125

Query: 100 SVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG 159
           + +    +   QI I   V+QADGGTR A I  A +AL D    M D             
Sbjct: 126 ASILTHLMPRSQIDIFVQVLQADGGTRAACINAATLALADAGIPMRDI------------ 173

Query: 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFA 218
            V + S          DL+Y EDS    D     +T    +  +Q  A+      D F  
Sbjct: 174 -VTSCSA---------DLNYIEDSAGGPDVTVGFLTKMDKVTLLQMDAK---LPMDTFET 220

Query: 219 MLNLAKDRIADLIKLQKDV-ISNEV 242
           +++LA +    +    +++ +SN+V
Sbjct: 221 VMDLAIEGCKAIANYIRELSLSNDV 245


>gi|198442889|ref|NP_001128332.1| exosome complex exonuclease RRP41 [Rattus norvegicus]
          Length = 245

 Score =  201 bits (512), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L       ++             +
Sbjct: 13  RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y     STG R +R     +    S E+   + +   + +        QI I   V+
Sbjct: 73  NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGT  A +  A +A+ D    M D              V A S G + G  + DL +
Sbjct: 129 QADGGTYAACVNAATLAVMDAGIPMRD-------------FVCACSAGFVDGTALADLSH 175

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E++          +  SG I  ++  +      +DH   +L  A     D+  L   V+
Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDSR---LHEDHLEQVLEAAAQAARDVHTLLDRVV 232

Query: 239 SNEV 242
              V
Sbjct: 233 RQHV 236


>gi|255513309|gb|EET89575.1| 3' exoribonuclease [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 246

 Score =  201 bits (512), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 95/240 (39%), Gaps = 22/240 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60
           RL GR  N++R + +   +   A GS  +++G+  +L       E  P  + +T    I 
Sbjct: 16  RLDGRDFNELRPLKIEAGILANANGSAYLEWGNNKVLAAVYGPKEATPRHLADTNKAIIK 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P S+     R         R+ EI ++      +VV L      +I I  +++Q
Sbjct: 76  CRYSMAPFSSMGDHGRSG----PNRRAIEISKVTKEVFENVVMLEEFPGSEIEIFIEILQ 131

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           +DGGTR                              +K  V A+S G +  + ++D++  
Sbjct: 132 SDGGTRA-------------AGITAAAVALANAGIHVKDMVYAVSAGRIDEHVVIDVNMI 178

Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  D D    +      ++ +Q       F+++ F   + +  +    + K+Q+D + 
Sbjct: 179 EDNYSDADMPVSISPKDNSVLLLQMDG---GFTKEQFGEAMKMILESGKVISKVQRDALK 235


>gi|221101900|ref|XP_002160475.1| PREDICTED: similar to putative exosome complex exonuclease RRP41
           [Hydra magnipapillata]
          Length = 244

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 96/241 (39%), Gaps = 22/241 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59
           +R  GR+ +++R+I+  + +   A+GS  ++ G+T ++ +     +V    +       I
Sbjct: 12  LRFDGRKCHELRKITAKKGIFSQADGSAYIEQGNTKVIASVYGPHEVSNRSKTLHDSTLI 71

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             ++ M   S   R  R     +   +S EI  ++ +   + +        QI I   VI
Sbjct: 72  NCQFSMATFSMSERKNRP----KGDRKSTEISMLLEKTFATAIMTELYPRSQIDIYVQVI 127

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           Q+DGG   A I  A +AL D    M             K  V A +   +    + D+++
Sbjct: 128 QSDGGVIAACINVATLALIDAGVPM-------------KDFVCACTSSYVQEKNLTDINH 174

Query: 180 GEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E+S+        M   +  +V  Q S+       D+   +L + K    D+  + +  +
Sbjct: 175 LEESSGSCQLTLAMLPRTAKVVAFQVSSR---LHLDNLEELLKITKQGCLDIYNVLQQAV 231

Query: 239 S 239
            
Sbjct: 232 E 232


>gi|194215186|ref|XP_001917049.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal
           RNA-processing protein 41) (Exosome component 4) (p12A)
           [Equus caballus]
          Length = 245

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L       ++             +
Sbjct: 13  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y     STG R +R     +    S E+   + +   + +        QI I   V+
Sbjct: 73  NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGT  A +  A +A+ D    M D              V A S G + G  + DL +
Sbjct: 129 QADGGTYAACVNAATLAVMDAGIPMRD-------------FVCACSAGFVDGTALADLSH 175

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E++          +  SG I  ++  A      +DH   +L  A     D+  L   V+
Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARAARDVHTLLDRVV 232

Query: 239 SNEV 242
              V
Sbjct: 233 RQHV 236


>gi|311253305|ref|XP_003125500.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 2 [Sus
           scrofa]
          Length = 243

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 91/242 (37%), Gaps = 21/242 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L       +            +  
Sbjct: 13  RVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASGRAPLPDRALVNC 72

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           +Y     STG R +R     +    S E+   + +A  + +        QI I   V+QA
Sbjct: 73  QYSSATFSTGERKRRPHGDRK----SCEMGLQLRQAFEAAILTQLHPRSQIDIYVQVLQA 128

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGG   A +  A +A+ D    M D              V A S G + G  + DL + E
Sbjct: 129 DGGIYAACVNVATLAVLDAGIPMRD-------------FVCACSAGFVDGTALADLSHVE 175

Query: 182 DSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ++          +  SG I  ++  A      +DH   +L  A     D+  +   V+  
Sbjct: 176 EAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAARDVHTVLDRVVRQ 232

Query: 241 EV 242
            V
Sbjct: 233 HV 234


>gi|296227067|ref|XP_002759197.1| PREDICTED: exosome complex exonuclease RRP41-like [Callithrix
           jacchus]
          Length = 245

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L       ++             +
Sbjct: 13  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y     STG R +R     +    S E+   + +   + +        QI I   V+
Sbjct: 73  NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGT  A +  A +A+ D    M D              V A S G + G  + DL +
Sbjct: 129 QADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTALADLSH 175

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E++          +  SG I  ++  A      +DH   +L  A     D+  L   V+
Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAAQDVHILLDRVV 232

Query: 239 SNEV 242
              V
Sbjct: 233 RQHV 236


>gi|148697598|gb|EDL29545.1| exosome component 4, isoform CRA_b [Mus musculus]
          Length = 271

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 91/244 (37%), Gaps = 23/244 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L       ++             +
Sbjct: 39  RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 98

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y     STG R +R     +    S E+   + +   + +        QI I   V+
Sbjct: 99  NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 154

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGT  A +  A +A+ D    M D              V A S G + G  + DL +
Sbjct: 155 QADGGTYAACVNAATLAVMDAGIPMRD-------------FVCACSAGFVDGTALADLSH 201

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E++          +  SG I  ++  +      +DH   +L  A      +  L   V+
Sbjct: 202 VEEAAGGPQLALALLPASGQIALLEMDSR---LHEDHLEQVLEAAAQAARGVHTLLDLVV 258

Query: 239 SNEV 242
              V
Sbjct: 259 RQHV 262


>gi|167043479|gb|ABZ08176.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           microorganism HF4000_APKG2H5]
          Length = 238

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 60/241 (24%), Positives = 100/241 (41%), Gaps = 23/241 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60
           R+ GR+   +R IS+   V   A GS  V++G  H++       E  P  I       + 
Sbjct: 16  RMDGRKPADLRPISIEVGVVPVAAGSACVRWGTNHVIAAVYGPMEAHPRKISRQDRAVLD 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST +R++          RS+EI ++   AL SVV L      +I ++ +++ 
Sbjct: 76  VRYNMAPFSTTDRIRPGF-----NRRSREISKVTSDALESVVLLEMYPRSKIRVEIEILC 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           A+ GTR   +T A VAL      M                V +++ G + G  I DL+  
Sbjct: 131 AEAGTRCVGLTAASVALAHAGIPM-------------TDMVVSVASGKINGVVICDLNKE 177

Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ED+  + D    M  +SG +V +Q   +    S D F    +   +    + ++    + 
Sbjct: 178 EDNYGEADLPMGMLPNSGDLVFLQMDGD---LSPDEFQQAWDYNMEAGLAVHEIMVQALK 234

Query: 240 N 240
            
Sbjct: 235 G 235


>gi|29611663|ref|NP_780608.1| exosome complex component RRP41 [Mus musculus]
 gi|21759405|sp|Q921I9|EXOS4_MOUSE RecName: Full=Exosome complex component RRP41; AltName:
           Full=Exosome component 4; AltName: Full=Ribosomal
           RNA-processing protein 41
 gi|15126706|gb|AAH12277.1| Exosome component 4 [Mus musculus]
 gi|26354721|dbj|BAC40987.1| unnamed protein product [Mus musculus]
 gi|74184267|dbj|BAE25679.1| unnamed protein product [Mus musculus]
 gi|74198393|dbj|BAE39680.1| unnamed protein product [Mus musculus]
          Length = 245

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 91/244 (37%), Gaps = 23/244 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L       ++             +
Sbjct: 13  RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y     STG R +R     +    S E+   + +   + +        QI I   V+
Sbjct: 73  NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGT  A +  A +A+ D    M D              V A S G + G  + DL +
Sbjct: 129 QADGGTYAACVNAATLAVMDAGIPMRD-------------FVCACSAGFVDGTALADLSH 175

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E++          +  SG I  ++  +      +DH   +L  A      +  L   V+
Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDSR---LHEDHLEQVLEAAAQAARGVHTLLDLVV 232

Query: 239 SNEV 242
              V
Sbjct: 233 RQHV 236


>gi|308491849|ref|XP_003108115.1| CRE-TIN-9.2 protein [Caenorhabditis remanei]
 gi|308248963|gb|EFO92915.1| CRE-TIN-9.2 protein [Caenorhabditis remanei]
          Length = 372

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 64/251 (25%), Positives = 100/251 (39%), Gaps = 41/251 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR+  Q+R I+    +++ AEGSC ++ G+T +L       +     R      I 
Sbjct: 125 FRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKASKRLEDRCAIV 184

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y     S   R  R     R   +S EI R++ +A  SV+   +    QI I C+VIQ
Sbjct: 185 CQYSTTTFSGLERKNRP----RGDRKSTEISRLLEKAFESVILTESFPRSQIDIFCEVIQ 240

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
            DG    A +    +AL D    M             KG  +A +CG++   PIVDL   
Sbjct: 241 GDGSNLAACVNATSLALADAGIPM-------------KGIASAATCGIVDAKPIVDLTSR 287

Query: 181 EDSTIDVD-------------------ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           E++ +                      A     D   +VE+Q          DH   +++
Sbjct: 288 EETDLLPRVTVSGFSSIILLLHSKFQLATICGRDEVILVELQNR-----LHIDHLSVVMD 342

Query: 222 LAKDRIADLIK 232
            AK   AD+ +
Sbjct: 343 AAKATCADVYE 353


>gi|268552543|ref|XP_002634254.1| C. briggsae CBR-EXOS-4.1 protein [Caenorhabditis briggsae]
 gi|206557764|sp|A8WQQ5|EXOS4_CAEBR RecName: Full=Putative exosome complex component RRP41
 gi|309371508|emb|CBG92366.1| CBR-EXOS-4.1 protein [Caenorhabditis briggsae AF16]
          Length = 240

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 100/235 (42%), Gaps = 25/235 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR+  Q+R I+    +++ AEGSC ++ G+T +L       +     R      I 
Sbjct: 9   FRMDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYESKASKRLEDRCAIV 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y     S   R  R     R   +S EI R++ +A  SV+   +    QI I C+VIQ
Sbjct: 69  CQYSTTTFSGLERKNRP----RGDRKSTEISRLLEKAFESVILTESFPRSQIDIFCEVIQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
            DG    A +    +AL D    M             KG  +A +CG++   PIVDL   
Sbjct: 125 GDGSNLAACVNATSLALADAGIPM-------------KGIASAATCGIVETKPIVDLTSR 171

Query: 181 EDSTIDVD---ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           E++ +      A     D   +VE+Q          DH   +++ AK   AD+ +
Sbjct: 172 EETDLLPRVTLATICGRDEVILVELQNR-----LHIDHLSVVMDAAKATCADVYE 221


>gi|9506689|ref|NP_061910.1| exosome complex component RRP41 [Homo sapiens]
 gi|109087712|ref|XP_001089090.1| PREDICTED: exosome complex exonuclease RRP41 [Macaca mulatta]
 gi|114622153|ref|XP_001154573.1| PREDICTED: exosome complex component RRP41 [Pan troglodytes]
 gi|332264376|ref|XP_003281213.1| PREDICTED: exosome complex exonuclease RRP41-like [Nomascus
           leucogenys]
 gi|14285756|sp|Q9NPD3|EXOS4_HUMAN RecName: Full=Exosome complex component RRP41; AltName:
           Full=Exosome component 4; AltName: Full=Ribosomal
           RNA-processing protein 41; AltName: Full=p12A
 gi|8927590|gb|AAF82134.1|AF281133_1 exosome component Rrp41 [Homo sapiens]
 gi|7020801|dbj|BAA91279.1| unnamed protein product [Homo sapiens]
 gi|12803867|gb|AAH02777.1| Exosome component 4 [Homo sapiens]
 gi|119602572|gb|EAW82166.1| exosome component 4 [Homo sapiens]
 gi|261860724|dbj|BAI46884.1| exosome component 4 [synthetic construct]
 gi|325464127|gb|ADZ15834.1| exosome component 4 [synthetic construct]
          Length = 245

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L       ++             +
Sbjct: 13  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y     STG R +R     +    S E+   + +   + +        QI I   V+
Sbjct: 73  NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGT  A +  A +A+ D    M D              V A S G + G  + DL +
Sbjct: 129 QADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTALADLSH 175

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E++          +  SG I  ++  A      +DH   +L  A     D+  L   V+
Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLERVLEAAAQAARDVHTLLDRVV 232

Query: 239 SNEV 242
              V
Sbjct: 233 RQHV 236


>gi|291416252|ref|XP_002724360.1| PREDICTED: exosome component 4 [Oryctolagus cuniculus]
          Length = 245

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 91/244 (37%), Gaps = 23/244 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L       ++             +
Sbjct: 13  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y     ST  R +R     +    S E+   + +   + +        QI I   V+
Sbjct: 73  NCQYSSATFSTAERKRRPHGDRK----SCELGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGT  A +  A +A+ D    M D              V A S G + G  + DL +
Sbjct: 129 QADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTALTDLSH 175

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E+++         +  SG I  ++  A      +DH   +L  A      +  L   V+
Sbjct: 176 VEEASGSPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAARGVHTLLDRVV 232

Query: 239 SNEV 242
              V
Sbjct: 233 RQHV 236


>gi|301773432|ref|XP_002922117.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1
           [Ailuropoda melanoleuca]
          Length = 245

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 91/244 (37%), Gaps = 23/244 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L       ++             +
Sbjct: 13  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y     STG R +R     +    S E+   + +   + +        QI I   V+
Sbjct: 73  NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGT  A +  A +A+ D    M D              V A S G +    + DL +
Sbjct: 129 QADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDSTALADLSH 175

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E++          +  SG I  ++  A      +DH   +L  A     D+  L   V+
Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAARDVHTLLDHVV 232

Query: 239 SNEV 242
              V
Sbjct: 233 RQHV 236


>gi|122920908|pdb|2NN6|B Chain B, Structure Of The Human Rna Exosome Composed Of Rrp41,
           Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
          Length = 249

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L       ++             +
Sbjct: 17  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 76

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y     STG R +R     +    S E+   + +   + +        QI I   V+
Sbjct: 77  NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 132

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGT  A +  A +A+ D    M D              V A S G + G  + DL +
Sbjct: 133 QADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTALADLSH 179

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E++          +  SG I  ++  A      +DH   +L  A     D+  L   V+
Sbjct: 180 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLERVLEAAAQAARDVHTLLDRVV 236

Query: 239 SNEV 242
              V
Sbjct: 237 RQHV 240


>gi|307214803|gb|EFN89690.1| Exosome complex exonuclease RRP41 [Harpegnathos saltator]
          Length = 271

 Score =  198 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 106/254 (41%), Gaps = 20/254 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWI 59
           +R+ GR+  ++R+I +   V   A+GS  ++ G+T +L       +    I +NT    +
Sbjct: 13  LRVDGRRALELRQIRIRMGVFGQADGSAYIEHGNTKVLAAVYGPHQPRNNIAKNTTKAIV 72

Query: 60  TAEYGMLPRS--TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
             +Y M   S  +G R +R     R   +SQE    +  A+ +++ L      QI I  +
Sbjct: 73  NCQYSMAVFSFTSGERKRRP----RGDWKSQERSIQLRHAMEAIIHLELYPRSQIDIFVE 128

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           ++Q DG    A++  A +AL D    +++ +    ++ +           +  G  ++D 
Sbjct: 129 ILQVDGSDYCASVNAATLALIDAGIPIKNYAVGCTVALINTPSTDEQDKTLAGG--VLDA 186

Query: 178 DYGEDSTIDVDANFVM---------TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
           ++ E+ +  V  + V           ++G IV   G+ +R      H  A+   A     
Sbjct: 187 NFVEEYSPGVTLSVVALPGTSEVESNENGLIVVAHGTGQR--LHLSHLEALKQRALQGCK 244

Query: 229 DLIKLQKDVISNEV 242
           D+  +    +   +
Sbjct: 245 DIRTIMDQSVRQHL 258


>gi|57095694|ref|XP_539207.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal
           RNA processing protein 41) (Exosome component 4) (p12A)
           isoform 1 [Canis familiaris]
          Length = 245

 Score =  198 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 91/244 (37%), Gaps = 23/244 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L       ++             +
Sbjct: 13  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y     STG R +R     +    S E+   + +   + +        QI I   V+
Sbjct: 73  NCQYSSATFSTGERKRRPHGDRK----SCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGT  A +  A +A+ D    M D              V A S G +    + DL +
Sbjct: 129 QADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDNTALADLSH 175

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E++          +  SG I  ++  A      +DH   +L  A     D+  +   V+
Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARAARDVHTVLDRVV 232

Query: 239 SNEV 242
              V
Sbjct: 233 RQHV 236


>gi|194761146|ref|XP_001962793.1| GF15621 [Drosophila ananassae]
 gi|190616490|gb|EDV32014.1| GF15621 [Drosophila ananassae]
          Length = 249

 Score =  198 bits (504), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 93/243 (38%), Gaps = 20/243 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ +++R I     V +  +GS  ++ G+T +L       +       +    I 
Sbjct: 13  LRLDGRRPHELRHIQCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTESNDVIIN 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y     ST  R  R     R   +SQE +  + +AL + +        QI +  +V+Q
Sbjct: 73  CQYSQATFSTAERKNRP----RGDRKSQEFKMYLQQALSAAIKSELYPRSQIDVYVEVLQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG     A+  A +AL D    + +              VA  +       P+ D+ + 
Sbjct: 129 ADGANYAVALNAATLALIDAGICLNELI------------VACTASLSKNNIPLTDISHI 176

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           E+ +         +  +  I  ++ S     F  DH   ++  A     ++  + + V+ 
Sbjct: 177 EEVSGGPKLTVAALPTAQKIAFLEMS---ERFHIDHLETVIETAMAGCREIRDILEAVVK 233

Query: 240 NEV 242
             +
Sbjct: 234 EHL 236


>gi|75045923|sp|Q7YRA3|EXOS4_BOVIN RecName: Full=Exosome complex component RRP41; AltName:
           Full=Exosome component 4; AltName: Full=Ribosomal
           RNA-processing protein 41
 gi|33411774|emb|CAD58792.1| putative exosome complex exonuclease RRP41 [Bos taurus]
 gi|296480766|gb|DAA22881.1| exosome complex exonuclease RRP41 [Bos taurus]
          Length = 245

 Score =  198 bits (503), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L       ++             +
Sbjct: 13  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y     STG R +R     +    S E+   + +   + +        QI I   V+
Sbjct: 73  NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGT  A +  A +A+ D    M D              V A S G + G  + DL +
Sbjct: 129 QADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTALADLSH 175

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E++          +  SG I  ++  A      +DH   +L  A     D+  +   V+
Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARASRDVHTVLDRVV 232

Query: 239 SNEV 242
              V
Sbjct: 233 RQHV 236


>gi|297683870|ref|XP_002819616.1| PREDICTED: exosome complex exonuclease RRP41-like [Pongo abelii]
          Length = 343

 Score =  198 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L       ++             +
Sbjct: 111 RVDGRRAGELRKIQARMGVFAQADGSGYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 170

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y     STG R +R     +    S E+   + +   + +        QI I   V+
Sbjct: 171 NCQYSSATFSTGERKRRRHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 226

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGT  A +  A +A+ D    M D              V A S G + G  + DL +
Sbjct: 227 QADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTALADLSH 273

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E++          +  SG I  ++  A      +DH   +L  A     D+  L   V+
Sbjct: 274 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLERVLEAAAQAARDVHTLLDRVV 330

Query: 239 SNEV 242
              V
Sbjct: 331 RQHV 334


>gi|73974737|ref|XP_857538.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal
           RNA processing protein 41) (Exosome component 4) (p12A)
           isoform 5 [Canis familiaris]
          Length = 238

 Score =  197 bits (502), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 90/242 (37%), Gaps = 26/242 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L       +            +  
Sbjct: 13  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASGH-----RALVNC 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           +Y     STG R +R     +    S E+   + +   + +        QI I   V+QA
Sbjct: 68  QYSSATFSTGERKRRPHGDRK----SCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVLQA 123

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGT  A +  A +A+ D    M D              V A S G +    + DL + E
Sbjct: 124 DGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDNTALADLSHVE 170

Query: 182 DSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ++          +  SG I  ++  A      +DH   +L  A     D+  +   V+  
Sbjct: 171 EAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARAARDVHTVLDRVVRQ 227

Query: 241 EV 242
            V
Sbjct: 228 HV 229


>gi|301773434|ref|XP_002922118.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 2
           [Ailuropoda melanoleuca]
          Length = 240

 Score =  197 bits (502), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 90/242 (37%), Gaps = 24/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L       +            +  
Sbjct: 13  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEAKGRR---DRALVNC 69

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           +Y     STG R +R     +    S E+   + +   + +        QI I   V+QA
Sbjct: 70  QYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQA 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGGT  A +  A +A+ D    M D              V A S G +    + DL + E
Sbjct: 126 DGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDSTALADLSHVE 172

Query: 182 DSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ++          +  SG I  ++  A      +DH   +L  A     D+  L   V+  
Sbjct: 173 EAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAARDVHTLLDHVVRQ 229

Query: 241 EV 242
            V
Sbjct: 230 HV 231


>gi|311253303|ref|XP_003125499.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1 [Sus
           scrofa]
          Length = 245

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L       ++             +
Sbjct: 13  RVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y     STG R +R     +    S E+   + +A  + +        QI I   V+
Sbjct: 73  NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQAFEAAILTQLHPRSQIDIYVQVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGG   A +  A +A+ D    M D              V A S G + G  + DL +
Sbjct: 129 QADGGIYAACVNVATLAVLDAGIPMRD-------------FVCACSAGFVDGTALADLSH 175

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E++          +  SG I  ++  A      +DH   +L  A     D+  +   V+
Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAAQAARDVHTVLDRVV 232

Query: 239 SNEV 242
              V
Sbjct: 233 RQHV 236


>gi|328769717|gb|EGF79760.1| hypothetical protein BATDEDRAFT_19845 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 253

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 99/242 (40%), Gaps = 22/242 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWI 59
           +R+ GR+  ++R +     +   A+GS  ++ G+T  +      ++      +      I
Sbjct: 24  LRVDGRRPPELRRLLTKVGLFTNADGSAYIELGNTKCVAAVYGPKESKIQSAQLHDRAVI 83

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             EY +   S+G R     +  ++  R  EI  +I R    VV  S     +I I   ++
Sbjct: 84  NVEYNVASFSSGERK----LKMKRDKRMLEIASIIKRTFEPVVMTSTFPRSEIDIYVQIL 139

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           Q DGG   AAI    +A+ D    M D             +V A S G   G  ++DL+Y
Sbjct: 140 QLDGGALHAAINATCLAMIDAGIPMSD-------------YVIACSAGFSNGSALLDLNY 186

Query: 180 GEDST-IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E+S  + V    ++  SG +  +      +    +HF  +LNLA +    L +   + +
Sbjct: 187 IEESAELPVLTAALLPKSGKLTMLSM---ESRLHLNHFQDVLNLATEGCNTLAESLNETV 243

Query: 239 SN 240
             
Sbjct: 244 RK 245


>gi|225709136|gb|ACO10414.1| Exosome complex exonuclease RRP41 [Caligus rogercresseyi]
          Length = 246

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 100/249 (40%), Gaps = 28/249 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNT 54
           +RL GR+ +++R +          A+GS  ++ G+T +L       + P         N 
Sbjct: 9   LRLDGRKSDELRRLRCRLGAFSWSADGSAYLEMGNTKVLAAVYGPRE-PRGGSSGDNSNK 67

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +   +  ++     ST  R +R+    R   RS E+   + +   + +        QI I
Sbjct: 68  EEAILNVQFSSAAFSTAERKQRQ----RGDKRSLEMAAHLKQTFAACIQTELYPRSQIDI 123

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             +V+Q DGG   A++  A +AL                   L+ +V A S  ++   P+
Sbjct: 124 FVEVLQTDGGHYCASVNAATLALIHAGI-------------PLRDYVCACSASLIKETPL 170

Query: 175 VDLDYGEDSTIDVDA-NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +D+   E +    +     +  SG IV ++ S     F  DH   +++ A +    +  +
Sbjct: 171 LDISMLESNLGGPELILAALPKSGEIVLLEMSQR---FHMDHLEKVIDEALEGTRKIRDI 227

Query: 234 QKDVISNEV 242
             +V+ + +
Sbjct: 228 LDEVVRDHL 236


>gi|195116638|ref|XP_002002859.1| GI10716 [Drosophila mojavensis]
 gi|193913434|gb|EDW12301.1| GI10716 [Drosophila mojavensis]
          Length = 249

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 91/244 (37%), Gaps = 22/244 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ +++R I     V +  +GS  ++ G+T +L       +            I 
Sbjct: 13  LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTEGNDLVIN 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y     ST  R  R     R   +SQE +  + +AL + +        QI I  +V+Q
Sbjct: 73  CQYSQATFSTSERKNRP----RGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDY 179
           ADG     ++  A +AL D    + +              V A +  +     P+ D+ +
Sbjct: 129 ADGANYAVSLNAATLALIDAGICLNE-------------FVVACTASLSNANIPLTDISH 175

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E+ +         +  +  I  ++ S     F  D    ++  A     ++  + +  +
Sbjct: 176 IEEVSGGPKLTIAALPTAEKIAFMEMS---ERFHIDQLETVIETAMAGCREIRDILESAV 232

Query: 239 SNEV 242
              +
Sbjct: 233 KEHL 236


>gi|66802544|ref|XP_635144.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4]
 gi|60463463|gb|EAL61648.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4]
          Length = 247

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 99/235 (42%), Gaps = 20/235 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59
           +R+ GR+ N++R I++   + K A+GS   + G+T ++       ++ +  +       +
Sbjct: 12  LRIDGRRANELRRINVEMGIFKRADGSAYYEQGNTKIIAAVYGPREISVSGKGVFDRAVV 71

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             E+     ST  R  ++   G     + EI  ++ +A  S +        QI I   V+
Sbjct: 72  KCEFSSSSFSTTERKPQQKTKG--DRVTTEIANLVKQAFESTIHTHLYPRSQINIYLQVL 129

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           Q+DGG + AAI  + +AL D    M             K  + A S   + G  ++DL+ 
Sbjct: 130 QSDGGLKAAAINASTLALIDAGISM-------------KDFICACSTSCIDGIAVLDLNN 176

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
            E+ +   D    +    G ++ +   ++     QD F ++L L +     +  +
Sbjct: 177 IEERSGGPDCLLSIQPQIGGVISLNMDSK---VPQDLFESVLELGEKGCKKIFSI 228


>gi|254168384|ref|ZP_04875229.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
 gi|197622665|gb|EDY35235.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
          Length = 208

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 90/220 (40%), Gaps = 23/220 (10%)

Query: 24  AEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGR 82
           A+GS  +++G   ++       +  P  ++      + A Y M P S   R +       
Sbjct: 1   ADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRAIVRARYSMAPFSVDERKR-----PG 55

Query: 83  QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQ 142
              R+ E+ ++I  AL SV+ +       I +  +V+QAD GTR A IT A +AL D   
Sbjct: 56  PDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVLQADAGTRVAGITVASLALADAGI 115

Query: 143 HMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF-VMTDSGHIVE 201
            M D              +   + G +    ++DL+  ED+    D    +M  +  I  
Sbjct: 116 PMRDL-------------IVGCAAGKIDDVVVLDLNKEEDNFGQADVPMAIMPRTKEIAL 162

Query: 202 VQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           +Q   +    S +     +++A D    + ++Q + +  +
Sbjct: 163 LQMDGD---MSYEELTTAMDMAMDAAEKIHEMQVEALKRK 199


>gi|118151420|ref|NP_001071554.1| exosome complex component RRP41 [Bos taurus]
 gi|81673708|gb|AAI09820.1| Exosome component 4 [Bos taurus]
          Length = 245

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--PMWIRNTKHGWI 59
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L       ++             +
Sbjct: 13  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRPLV 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y     STG R +R     +    S E+   + +   + +        QI I   V+
Sbjct: 73  NCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGT  A +  A +A+ D    M D              V A S G + G  + DL +
Sbjct: 129 QADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDGTALADLSH 175

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E++          +  SG I  ++  A      +DH   +L  A     D+  +   V+
Sbjct: 176 VEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARASRDVHTVLDRVV 232

Query: 239 SNEV 242
              V
Sbjct: 233 RQHV 236


>gi|195031196|ref|XP_001988306.1| GH10637 [Drosophila grimshawi]
 gi|193904306|gb|EDW03173.1| GH10637 [Drosophila grimshawi]
          Length = 249

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 91/244 (37%), Gaps = 22/244 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ +++R I     V +  +GS  ++ G+T +L       +            I 
Sbjct: 13  LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKAKKSEGNDLIIN 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y     ST  R  R     R   +SQE +  + +AL + +        QI I  +V+Q
Sbjct: 73  CQYSQATFSTAERKNRP----RGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDY 179
           ADG     ++  A +AL D    + +              V A +  +     P+ D+ +
Sbjct: 129 ADGANYAVSLNAATLALIDAGICLNE-------------FVVACTASLSKSNIPLTDISH 175

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E+ +         +  +  I  ++ S     F  D    ++  A     ++  + +  +
Sbjct: 176 IEEVSGGPKLTIAALPTAEKIAFMEMS---ERFHIDQLETVIETAMAGCREIRDILEAAV 232

Query: 239 SNEV 242
              +
Sbjct: 233 KEHL 236


>gi|195398184|ref|XP_002057704.1| GJ18275 [Drosophila virilis]
 gi|194141358|gb|EDW57777.1| GJ18275 [Drosophila virilis]
          Length = 249

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 91/244 (37%), Gaps = 22/244 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ +++R I     V +  +GS  ++ G+T +L       +            I 
Sbjct: 13  LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTEGNDLIIN 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y     ST  R  R     R   +SQE +  + +AL + +        QI I  +V+Q
Sbjct: 73  CQYSQATFSTSERKNRP----RGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDY 179
           ADG     ++  A +AL D    + +              V A +  +     P+ D+ +
Sbjct: 129 ADGANYAVSLNAATLALIDAGICLNE-------------FVVACTASLSKSNIPLTDISH 175

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E+ +         +  +  I  ++ S     F  D    ++  A     ++  + +  +
Sbjct: 176 IEEVSGGPKLTIAALPTAEKIAFMEMS---ERFHIDQLETVIETAMAGCREIRDILESAV 232

Query: 239 SNEV 242
              +
Sbjct: 233 KEHL 236


>gi|73974735|ref|XP_857497.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal
           RNA processing protein 41) (Exosome component 4) (p12A)
           isoform 4 [Canis familiaris]
          Length = 244

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 91/243 (37%), Gaps = 22/243 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWIT 60
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L       +         +   + 
Sbjct: 13  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEARGVRTLTQRKALVN 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y     STG R +R     +    S E+   + +   + +        QI I   V+Q
Sbjct: 73  CQYSSATFSTGERKRRPHGDRK----SCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVLQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGT  A +  A +A+ D    M D              V A S G +    + DL + 
Sbjct: 129 ADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGFVDNTALADLSHV 175

Query: 181 EDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           E++          +  SG I  ++  A      +DH   +L  A     D+  +   V+ 
Sbjct: 176 EEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARAARDVHTVLDRVVR 232

Query: 240 NEV 242
             V
Sbjct: 233 QHV 235


>gi|149430580|ref|XP_001515504.1| PREDICTED: similar to Chain C, Structure Of The Human Rna Exosome
           Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42,
           Csl4, Rrp4, And Rrp40 [Ornithorhynchus anatinus]
          Length = 245

 Score =  195 bits (496), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 91/244 (37%), Gaps = 23/244 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWI 59
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L       ++             +
Sbjct: 13  RVDGRRAGELRKIEARMGVFAQADGSAYIEQGNTKALAVVYGPHEMRGLRSRALPDRALV 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             ++ M   STG R +R     +    + E+ + + +     +        QI I   ++
Sbjct: 73  NCQFSMATFSTGERKRRPHGDRK----ATEMSQHLQQTFEDAILTQLYPRSQIDIYVQIL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGG   A +  A +A+ D                 L+  V A S G +   P+ DL Y
Sbjct: 129 QADGGNYAACVNAATLAVLDAGI-------------PLRDFVCASSAGFVEDTPLADLSY 175

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E++          +  SG I  +   A      +DH   +L  A     D+  +   V+
Sbjct: 176 VEEAAGGPQVALALLPGSGQITLLGLDAR---VHEDHLERVLEAATAAARDVHTVLDRVV 232

Query: 239 SNEV 242
              V
Sbjct: 233 RRHV 236


>gi|332017939|gb|EGI58588.1| Exosome complex exonuclease RRP41 [Acromyrmex echinatior]
          Length = 272

 Score =  194 bits (494), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 97/210 (46%), Gaps = 10/210 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-IRNTKHGWI 59
           +R+ GR+  ++R+I +   V   A+GS  ++ G+T +L       +      RN+    I
Sbjct: 12  LRIDGRRALELRQIRMRMGVFGQADGSAYIEHGNTKVLAAVYGPRQSRSSASRNSTKAII 71

Query: 60  TAEYGMLPRS--TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
             +Y M   S  +G R +R     R   +SQE    +  A+ +++ L      QI +  +
Sbjct: 72  NCQYSMAVFSFTSGERKRRP----RGDWKSQERSAQLRHAMEAIIHLELYPRSQIDVFVE 127

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+Q DG    A++  A +AL D    +++ +    ++ V K  V      +  G  ++D 
Sbjct: 128 VLQVDGSDYCASVNAATLALIDAGIPIKNYAIGCSVTLVNKPSVEDEDKTLATG--VLDA 185

Query: 178 DYGEDSTIDVDANFV-MTDSGHIVEVQGSA 206
           +Y E+ +  V  + V +  + + +EV G+ 
Sbjct: 186 NYVEECSPGVTLSVVALAGTNNDIEVDGNG 215


>gi|302798759|ref|XP_002981139.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii]
 gi|300151193|gb|EFJ17840.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii]
          Length = 264

 Score =  194 bits (494), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 99/224 (44%), Gaps = 22/224 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +RL GR+  +MR++     V + A GS + + G+T ++       +V     +      +
Sbjct: 9   LRLDGRRPLEMRQLHAELGVVENANGSAMFEMGNTKVIAAVYGPHEVHNRSQQLWDRALV 68

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             EY M   STG+        G+   RS EI  +I + L + +  + +   QI I   V+
Sbjct: 69  RCEYSMAAFSTGD----RRRKGKGNRRSTEISLVIRQTLEAAILTNLMPKSQIDIYVQVL 124

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTR+A I  A +AL +    M D              VA+ + G L G P++DL+Y
Sbjct: 125 QADGGTRSACINAAALALAEAGIPMRDL-------------VASCAAGYLNGTPLLDLNY 171

Query: 180 GEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNL 222
            EDS    D    +      +  +Q  ++      +HF  +  L
Sbjct: 172 VEDSGGGPDVTVALFPKVDKVSLLQMDSK---MPLEHFENVFQL 212


>gi|302801728|ref|XP_002982620.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii]
 gi|300149719|gb|EFJ16373.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii]
          Length = 242

 Score =  194 bits (494), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 106/240 (44%), Gaps = 22/240 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +RL GR+  +MR++     V + A GS + + G+T ++       +V     +      +
Sbjct: 9   LRLDGRRPLEMRQLHAELGVVENANGSAMFEMGNTKVIAAVYGPHEVHNRSQQLWDRALV 68

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             EY M   STG+        G+   RS EI  +I + L + +  + +   QI I   V+
Sbjct: 69  RCEYSMAAFSTGD----RRRKGKGNRRSTEISLVIRQTLEAAILTNLMPKSQIDIYVQVL 124

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTR+A I  A +AL +    M D              VA+ + G L G P++DL+Y
Sbjct: 125 QADGGTRSACINAAALALAEAGIPMRDL-------------VASCAAGYLNGTPLLDLNY 171

Query: 180 GEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS    D    +      +  +Q  ++      +HF  +  LA +      +  ++V+
Sbjct: 172 VEDSGGGPDVTVALFPKVDKVSLLQMDSK---LPLEHFENVFQLAAEGAKAAARYMREVL 228


>gi|125984746|ref|XP_001356137.1| GA13761 [Drosophila pseudoobscura pseudoobscura]
 gi|195161898|ref|XP_002021795.1| GL26697 [Drosophila persimilis]
 gi|54644456|gb|EAL33197.1| GA13761 [Drosophila pseudoobscura pseudoobscura]
 gi|194103595|gb|EDW25638.1| GL26697 [Drosophila persimilis]
          Length = 249

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 92/243 (37%), Gaps = 20/243 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ +++R I     V +  +GS  ++ G+T +L       +       T    I 
Sbjct: 13  LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGMKTETNDVIIN 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y     +T  R  R     R   +S E +  + +AL + +        QI I  +V+Q
Sbjct: 73  CQYSQATFATAERKNRP----RGDRKSLEFKMYLEQALSAAIKSELYPRSQIDIYVEVLQ 128

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG     A+  A +AL D    + +              VA  +       P+ D+ + 
Sbjct: 129 ADGANYAVALNAATLALIDAGICLNEFI------------VACTASLSKSSIPLTDISHT 176

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           E+ +         + ++  I  ++ S     F  DH   ++  A     ++  + +  + 
Sbjct: 177 EEVSGGPMLTVAALPNAQKIAFLEMS---ERFHIDHLETVIETAMAGCREIRDILEAAVR 233

Query: 240 NEV 242
             +
Sbjct: 234 EHL 236


>gi|195435372|ref|XP_002065667.1| GK15569 [Drosophila willistoni]
 gi|194161752|gb|EDW76653.1| GK15569 [Drosophila willistoni]
          Length = 251

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 94/245 (38%), Gaps = 22/245 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--W 58
           +RL GR+ +++R I     V +  +GS  ++ G+T +L       +     ++++     
Sbjct: 13  LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKNKSSESNDVI 72

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           I  +Y     ST  R  R     R   +SQE +  + +AL + +        QI +  +V
Sbjct: 73  INCQYSQATFSTAERKNRP----RGDRKSQEFKMYLQQALSAAIKSELYPRSQIDVYVEV 128

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +QADG     A+  A +AL D    + +              VA  +       P+ D+ 
Sbjct: 129 LQADGANYAVALNAATLALIDAGICLNEFI------------VACTASLSKSNIPLTDIS 176

Query: 179 YGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
             E+ +         +  S  I  ++ S     F  DH   ++  A     ++  + +  
Sbjct: 177 QVEEISGGPKLTVAALPTSEKIAFLEMS---ERFHIDHLETVIETAMAGCREIRDILEAA 233

Query: 238 ISNEV 242
           +   +
Sbjct: 234 VKEHL 238


>gi|307174738|gb|EFN65093.1| Exosome complex exonuclease RRP41 [Camponotus floridanus]
          Length = 274

 Score =  192 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 105/245 (42%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWI 59
           +R  GR+  ++R+I L   V   A+GS  ++ G+T +L       +    I RN+   ++
Sbjct: 13  LRSDGRRALELRQIRLRMGVFGQADGSAYIEHGNTKVLAAVYGPHQPKSNISRNSTKAFV 72

Query: 60  TAEYGMLPRS--TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
             +Y M   S  +G R +R     R   +SQE    +  A+ +++ L      QI I  +
Sbjct: 73  NCQYSMAVFSFTSGERKRRP----RGDWKSQERSAQLRHAMEAIIHLELYPRSQIDIFVE 128

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV-AAISCGMLCGYPIVD 176
           V+Q DG    A++  + +AL D    +++ +    +S + K          +  G  ++D
Sbjct: 129 VLQVDGSDYCASVNASTLALIDAGIPIKNYAVGCTVSLINKLTTEEEEDKTLATG--VLD 186

Query: 177 LDYGEDSTIDVDANFV-MTDSGHIVEVQGSAE-------RATFSQDHFFAMLNLAKDRIA 228
            ++ E+ +  V  + V + ++ + VEV GS                   A+   A     
Sbjct: 187 ANFVEECSPGVTLSVVALPETNNEVEVDGSGLIVVAHGAGQRLHLSRLEALKKRALQGCQ 246

Query: 229 DLIKL 233
           D+ ++
Sbjct: 247 DIKEI 251


>gi|302829841|ref|XP_002946487.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f.
           nagariensis]
 gi|300268233|gb|EFJ52414.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f.
           nagariensis]
          Length = 245

 Score =  191 bits (486), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 94/243 (38%), Gaps = 22/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59
           +RL GR+  ++R I+    V   A+GS + + G+T +L        V            +
Sbjct: 9   LRLDGRRPRELRRINCQLDVLSSADGSAIFEMGNTKVLAAVFGPHAVTKRADLREDAAIV 68

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             EY M   STG         G+   RS E+  +I   L   +    +   QI +   V+
Sbjct: 69  VCEYSMAAFSTGE----RRRRGKGDRRSTELSMVIRNTLEQAILRELMPRSQIDVYVQVL 124

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTR                              L+  VA+ + G L G P++DL++
Sbjct: 125 QADGGTRC-------------AAINAAVLALAAAGVPLRDLVASCAAGYLDGTPLLDLNF 171

Query: 180 GEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS    D    +    G +V VQ          D F A+L+LA+D    +  + +  +
Sbjct: 172 TEDSGGGPDLAVALAPREGLLVLVQMDNR---LPVDTFQAVLDLARDGCRTISGVMRAAL 228

Query: 239 SNE 241
              
Sbjct: 229 LEH 231


>gi|194860851|ref|XP_001969665.1| GG10219 [Drosophila erecta]
 gi|190661532|gb|EDV58724.1| GG10219 [Drosophila erecta]
          Length = 246

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 90/243 (37%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ +++R I     V +  +GS  ++ G+T +L       +            I 
Sbjct: 13  LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQA---KSKHTESIIN 69

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y     ST  R  R     R   +S E +  + +AL + +        QI I  +V+Q
Sbjct: 70  CQYSQATFSTAERKYRP----RGDRKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQ 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG     A+  A +AL D    + +              VA  +       P+ D+ + 
Sbjct: 126 ADGANYAVALNAATLALIDAGICLNEFI------------VACTASLSKSNIPLTDISHF 173

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           E+ +         +  +  I  ++ S     F  DH   ++  A     ++  + +  + 
Sbjct: 174 EEVSGGPKLTVAALPTAEKIAFLEMS---ERFHIDHLETVIETAMAGCREIRDILEAAVK 230

Query: 240 NEV 242
             +
Sbjct: 231 EHL 233


>gi|195472532|ref|XP_002088554.1| GE11809 [Drosophila yakuba]
 gi|194174655|gb|EDW88266.1| GE11809 [Drosophila yakuba]
          Length = 246

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 90/243 (37%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ +++R I     V +  +GS  ++ G+T +L       +            I 
Sbjct: 13  LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKG---KQTESIIN 69

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y     ST  R  R     R   +S E +  + +AL + +        QI I  +V+Q
Sbjct: 70  CQYSQATFSTAERKNRP----RGDRKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQ 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG     A+  A +AL D    + +              VA  +       P+ D+ + 
Sbjct: 126 ADGANYAVALNAATLALIDAGICLNEFI------------VACTASLSKSNIPLTDISHF 173

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           E+ +         +  +  I  ++ S     F  DH   ++  A     ++  + +  + 
Sbjct: 174 EEVSGGPKLTVAALPTAEKIAFLEMS---ERFHIDHLETVIETAMAGCREIRDILEAAVK 230

Query: 240 NEV 242
             +
Sbjct: 231 EHL 233


>gi|159474468|ref|XP_001695347.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
           reinhardtii]
 gi|158275830|gb|EDP01605.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
           reinhardtii]
          Length = 245

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 91/243 (37%), Gaps = 22/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG-WI 59
           +RL GR+  ++R I+    V   A+GS + + G+T +L        V       + G  +
Sbjct: 9   LRLDGRRPRELRRINCQLDVLSNADGSAIFEMGNTKVLAAVFGPHAVTRRSELREEGALV 68

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             EY M   STG         G+   RS E+  +I   L   V    L   QI +   V+
Sbjct: 69  VCEYSMAAFSTGE----RRRRGKGDRRSTELSMVIRNTLEQAVITELLPRSQIDVYVQVL 124

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTR                              L+  VA  + G L G  ++DL+Y
Sbjct: 125 QADGGTRC-------------AAINAAVLALAAAGVPLRDLVAGCAAGYLDGTALLDLNY 171

Query: 180 GEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            EDS    D    +      +  VQ          D F A++ LA++    +  + +  +
Sbjct: 172 TEDSGGGPDLCVALAPRLDSLYLVQMDNR---LPVDTFQAVMELAREGCRTISGVMRAAL 228

Query: 239 SNE 241
              
Sbjct: 229 LEH 231


>gi|24584046|ref|NP_609618.2| Ski6 [Drosophila melanogaster]
 gi|7298022|gb|AAF53263.1| Ski6 [Drosophila melanogaster]
 gi|201065945|gb|ACH92382.1| FI07225p [Drosophila melanogaster]
          Length = 246

 Score =  188 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 89/243 (36%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ +++R I     V +  +GS  ++ G+T +L       +      N     I 
Sbjct: 13  LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKG---NQTESVIN 69

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y     ST  R  R     R   +S E +  + +AL + +        QI I  +V+Q
Sbjct: 70  CQYSQATFSTAERKNRP----RGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQ 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
            DG     A+  A +AL D    + +              VA  +       P+ D+   
Sbjct: 126 DDGANYAVALNAATLALIDAGICLNEFI------------VACTASLSKSNIPLTDISQF 173

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           E+ +         +  +  I  ++ S     F  DH   ++  A     ++  + +  + 
Sbjct: 174 EEVSGGPKLTVAALPTAEKIAFLEMS---ERFHIDHLETVIETAMAGCREIRDILEAAVK 230

Query: 240 NEV 242
             +
Sbjct: 231 EHL 233


>gi|195351217|ref|XP_002042132.1| GM25757 [Drosophila sechellia]
 gi|194123956|gb|EDW45999.1| GM25757 [Drosophila sechellia]
          Length = 246

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 89/243 (36%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ +++R I     V +  +GS  ++ G+T +L       +      N     I 
Sbjct: 13  LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKG---NQTESVIN 69

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y     ST  R  R     R   +S E +  + +AL + +        QI I  +V+Q
Sbjct: 70  CQYSQATFSTAERKNRP----RGDRKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQ 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
            DG     A+  A +AL D    + +              VA  +       P+ D+   
Sbjct: 126 DDGANYAVALNAATLALIDAGICLNEFI------------VACTASLSKSNIPLTDISQF 173

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           E+ +         +  +  I  ++ S     F  DH   ++  A     ++  + +  + 
Sbjct: 174 EEVSGGPKLTVAALPTAEKIAFLEMS---ERFHIDHLETVIETAMAGCREIRDILEAAVK 230

Query: 240 NEV 242
             +
Sbjct: 231 EHL 233


>gi|328777661|ref|XP_003249381.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1 [Apis
           mellifera]
          Length = 284

 Score =  188 bits (478), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 102/253 (40%), Gaps = 21/253 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKH 56
           +RL GR+  ++R+I +   V   A+GS  ++ G+T +L T     +              
Sbjct: 29  LRLDGRRALELRQIRIKMGVFGQADGSAYIEHGNTKILVTVYGPHQPRNSTGRSTSKITK 88

Query: 57  GWITAEYGMLPR--STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           G +  +Y M     S+G R ++     R   +SQE    +  A+ +++ L      QI I
Sbjct: 89  GIVNCQYSMAVFSLSSGERKRKP----RGDRKSQERSLQLKHAMEAIIHLELYPRSQIDI 144

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             + +Q DG    A++  A +AL D    +++ +    ++ +    +      +  G  +
Sbjct: 145 YVEALQVDGSEYCASVNAATLALIDAGIPIKNYAIGCTVTLINCPSLEDEDNTLEKG--V 202

Query: 175 VDLDYGEDSTIDVDANFV-------MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
           +D +Y E+    V  + V       ++  G IV  QG+ +R   SQ        L     
Sbjct: 203 LDANYVEECAPGVTLSVVALPNSDGISKDGLIVVAQGAGQRLHLSQFESLKARVLC--GC 260

Query: 228 ADLIKLQKDVISN 240
            D+  +    +  
Sbjct: 261 QDIKTILDHAVRQ 273


>gi|17946442|gb|AAL49254.1| RE67757p [Drosophila melanogaster]
          Length = 246

 Score =  187 bits (477), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 89/243 (36%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ +++R I     V +  +GS  ++ G+T +L       +      N     I 
Sbjct: 13  LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKG---NQTESVIN 69

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y     ST  R  R     R   +S E +  + +AL + +        QI I  +V+Q
Sbjct: 70  CQYSQATFSTAERKNRP----RGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQ 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
            DG     A+  A +AL D    + +              VA  +       P+ D+   
Sbjct: 126 DDGANYAVALNAATLALIDAGICLNEFI------------VACTASLSKSNIPLTDISQF 173

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           E+ +         +  +  I  ++ S     F  DH   ++  A     ++  + +  + 
Sbjct: 174 EEVSGGPKLTVAALPTAEKIAFLEMS---ERFHIDHLGTVIETAMAGCREIRDILEAAVK 230

Query: 240 NEV 242
             +
Sbjct: 231 EHL 233


>gi|195996065|ref|XP_002107901.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens]
 gi|190588677|gb|EDV28699.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens]
          Length = 243

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 96/243 (39%), Gaps = 24/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +R+ GR+  ++R  +    V   A+GS  ++ G+T  L +     +             I
Sbjct: 9   LRIDGRRPEEIRRFNCRLGVLSRADGSAYLEQGNTKALASINGPHQAGDKAKIKHDRVHI 68

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y M   ST  R  R     +   RS +I +++    +S +        QI I   ++
Sbjct: 69  NFQYSMATFSTNERRNRP----KGDKRSIDISQLMREIFQSAILTDLYPKSQIDIHVQIL 124

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGG  +A I  A +AL D    M             K  + + +  ++    I+D++ 
Sbjct: 125 QADGGNYSACINAATLALMDAGVPM-------------KDFICSCTASLVDSKTIIDVNN 171

Query: 180 GED-STIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ-KD 236
            E+    +      ++  S  I+  Q    ++    DH   +L        D+ ++  ++
Sbjct: 172 SEELHFSNPLLTLAILPTSEEIILCQM---KSRLHADHLEDILKAGIKGCKDIYEIMHRE 228

Query: 237 VIS 239
           V++
Sbjct: 229 VLN 231


>gi|312065760|ref|XP_003135946.1| EXOSome component family member [Loa loa]
 gi|307768890|gb|EFO28124.1| EXOSome component family member [Loa loa]
          Length = 247

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 93/246 (37%), Gaps = 27/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWIT 60
           R  GR+  Q+R ++    V   A+GS  ++ G+T +L       E             I 
Sbjct: 10  RQDGRKPYQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQRSRLLEDRCIIN 69

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y M   ST  R +R     R   RS E  R++ +A  + V        QI + C+++Q
Sbjct: 70  CQYSMATFSTNERKERP----RGDRRSLEFARLMEKAFEAAVLTENYPRSQIDVFCELLQ 125

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
           ADG    A +    +AL D    M             +G VAA SC     G   VD++ 
Sbjct: 126 ADGSHLAACVNVGTLALADAGVPM-------------RGLVAAASCACAPNGVACVDVNS 172

Query: 180 GEDSTIDVDANFVMT---DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            E+  I            D+  + E+Q         +++   +L  A+   A +    + 
Sbjct: 173 REEMGIIPRLTVATISGQDAVVLAELQNR-----LHKNYLIVILEAARRATAHVHSCLEA 227

Query: 237 VISNEV 242
            +   +
Sbjct: 228 AVLTHI 233


>gi|198427597|ref|XP_002131069.1| PREDICTED: similar to LOC495942 protein [Ciona intestinalis]
          Length = 247

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 93/245 (37%), Gaps = 24/245 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT---KHGW 58
           R  GR+ +++R +     V   A+GS  ++ G+T +L       +    +R+       +
Sbjct: 13  RFDGRKPSELRRVRCNMGVFTQADGSAYIEQGNTKVLAAIYGPHEASNNMRSRVCLDKCF 72

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           I  E+     S+  R KR     R   + +++   I +   + V        QI I   V
Sbjct: 73  INCEFSQAMFSSAERKKR----SRGDRKGKDMSAHIKQTFEAAVRTQLYPRSQIDIYLQV 128

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           + +DG    A +  A +AL D    M             K +V A S  +     ++D++
Sbjct: 129 LHSDGSLYCACVNAATLALIDAGIAM-------------KDYVCACSASLTKETSLIDIN 175

Query: 179 YGEDSTIDVDAN-FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           + E+     + +  +M     I+  + +       QD    +++   +   D+  +    
Sbjct: 176 HVEELAGCAEFSAAIMPKLDQIIYSELNGR---IHQDELGQLVDAVTNGCKDIFAVIDRF 232

Query: 238 ISNEV 242
           + + +
Sbjct: 233 VRSRL 237


>gi|47220383|emb|CAF98482.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 291

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/290 (19%), Positives = 93/290 (32%), Gaps = 69/290 (23%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-------------- 47
           R+ GR+  ++R+I     V   A+GS  ++ G+T  L       +V              
Sbjct: 13  RIDGRKATELRKIQARMGVFAQADGSAYLEQGNTKALAVVYGPHEVCVCVCVCVCVCVCQ 72

Query: 48  ---PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDL 104
                         I  +Y M   ST  R +R     +    S E+   + +   + V  
Sbjct: 73  MRGSRSRARHDRAVINCQYSMATFSTAERKRRPHGDRK----STEMSLHLKQTFEAAVMT 128

Query: 105 SALGSRQIIIDCDV-------------------------------IQADGGTRTAAITGA 133
                 QI I   V                               +Q+DGG  +  +  A
Sbjct: 129 QLFPRSQIDIYVKVGLVLMFSLLESRLSQAFYLSVMDKDPPCLQILQSDGGNYSVCVNAA 188

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV- 192
            +A+ D    M D             +V A + G +   P+ DL Y E+S          
Sbjct: 189 TLAVIDAGIPMRD-------------YVCACTVGFVDETPLADLCYAEESGGVSSLGLAL 235

Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           +   G I  VQ  A      QD+  A++  A      + K+  +V+   +
Sbjct: 236 LPRGGQIALVQMDAR---LHQDNLDALMEAAMTACKGVSKVLDEVVRQHL 282


>gi|170586916|ref|XP_001898225.1| Putative exosome complex exonuclease RRP41 [Brugia malayi]
 gi|158594620|gb|EDP33204.1| Putative exosome complex exonuclease RRP41, putative [Brugia
           malayi]
          Length = 249

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 94/244 (38%), Gaps = 21/244 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWI 59
            R  GR+ +Q+R ++    V   A+GS  ++ G+T +L       E             I
Sbjct: 9   FRQDGRKPHQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQRSRLLEDRCII 68

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +Y M   ST  R +R     R   RS E  R++ +A    +        QI + C+++
Sbjct: 69  NCQYSMATFSTNERKERP----RGDRRSLEFARLMEKAFEEAILTENYPRSQIDVFCELL 124

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLD 178
           QADG    A +    +AL D    M             +G VAA SC    G    VD++
Sbjct: 125 QADGSHLAACVNVGTLALADAGVPM-------------RGLVAAASCACAPGGLACVDVN 171

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             E+  I      V T SG    V  +  +    ++H   +L  A+   A +    +  +
Sbjct: 172 SREEMGIVPRLT-VATISGQ-DAVVMAELQNRLHKNHLMVILGNARKATAHVHSCLEAAV 229

Query: 239 SNEV 242
              +
Sbjct: 230 LTHI 233


>gi|281204136|gb|EFA78332.1| Exosome complex exonuclease rrp41 [Polysphondylium pallidum PN500]
          Length = 248

 Score =  184 bits (469), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 105/252 (41%), Gaps = 29/252 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +R+ GR+ N++R +++   +   A+GS   + G+T +        +V            +
Sbjct: 12  LRIDGRRNNEIRRLNMKMGIFNRADGSAYYEQGNTKITVAVYGPREVASNQRMLHDRAIV 71

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             EY     S+    K    + +   +S EI  +I +A  S + ++     QI I   V+
Sbjct: 72  NCEYSQAAFSSATDRK---PTRKSDKQSYEIASLIKQAFESTIQITLFPRSQIDIYVQVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGG + AA+  A +A+ D    M D              + A S   + G P++D++ 
Sbjct: 129 QADGGLKAAALNAATLAVIDAGLPMRD-------------FICACSATFIEGVPLLDMNQ 175

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQKDV 237
            E+ +   D    +    G ++ +      +   QD F ++L LA      +   LQ +V
Sbjct: 176 MEERSGGADLLLSIQPQLGGVISLNM---ESKVPQDMFESVLELANLGCMKIFALLQTEV 232

Query: 238 -------ISNEV 242
                  +SN++
Sbjct: 233 KRHSADLLSNQI 244


>gi|332796516|ref|YP_004458016.1| 3' exoribonuclease [Acidianus hospitalis W1]
 gi|332694251|gb|AEE93718.1| 3' exoribonuclease [Acidianus hospitalis W1]
          Length = 276

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 109/255 (42%), Gaps = 23/255 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ N+ R +S+T   +K A+GS LVK GDT +L    +E + P +      G + 
Sbjct: 27  IRADGRKFNEYRPLSITLSYAKKADGSALVKLGDTTVLAGVKVEPEEP-FEDTPNQGNLV 85

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QI 112
               +LP +           G     + E+ R++ R+LR    +DLS L    G +   +
Sbjct: 86  VNVELLPLAYET-----FEPGPPDENAIELSRVVDRSLRDSKSIDLSKLVIEPGKKIWTV 140

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHVAAI 164
            +D  V+   G    A    A  AL+D  L  +    ++ ++ +        +   V  +
Sbjct: 141 WVDIYVLDYGGNILDACTLAAVSALYDTRLPKVVKEGDEIKIIKEEKGEKLPMNFPVVTV 200

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           S   +  + +VD D  E+  +D   +   T  G IV +Q +    TF+      +  LA+
Sbjct: 201 SVAKIGKHLVVDPDLDEEGIMDAKISLSYTPEGRIVGIQKTG-IGTFTLTEIDNVETLAR 259

Query: 225 DRIADLIKLQKDVIS 239
                L++  K  I+
Sbjct: 260 SVSQKLLEELKKQIN 274


>gi|146302863|ref|YP_001190179.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera sedula
           DSM 5348]
 gi|145701113|gb|ABP94255.1| ribosomal RNA-processing protein RRP42 [Metallosphaera sedula DSM
           5348]
          Length = 280

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/254 (25%), Positives = 104/254 (40%), Gaps = 23/254 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+    R +S+T   +K A+GS LVK GDT +L    +EE  P +      G +  
Sbjct: 28  RSDGRKFTDYRPLSITLGYAKKADGSALVKLGDTTVLAGVKVEEDEP-YPDTPNQGNLVV 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +LP +           G     + E+ R++ R+LR    VDLS L    G +   + 
Sbjct: 87  NAELLPLAYET-----FEPGPPDENAIELSRVVDRSLRDSKAVDLSGLVIEPGKKVWTVW 141

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH--------MEDCSNKFQLSQVLKGHVAAIS 165
           +D  V+   G    A    A  AL+D            +     +      +K  V  +S
Sbjct: 142 VDISVLDYGGNVLDACTIAAVAALYDAKLPKVVRENDNIIIQKEEKVTPLPIKYPVVTVS 201

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
              +  + +VD D  E+  +D   +F    SG+IV +Q S E  +FSQ        +A  
Sbjct: 202 VAKIGKFLVVDPDLEEEGIMDAKISFSYIPSGNIVGIQKSGE-GSFSQQEVEVAEGMASA 260

Query: 226 RIADLIKLQKDVIS 239
               L++  K +I 
Sbjct: 261 TSQKLLEELKSLIG 274


>gi|70606424|ref|YP_255294.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus
           acidocaldarius DSM 639]
 gi|68567072|gb|AAY80001.1| exosome complex exonuclease RRP43-like protein [Sulfolobus
           acidocaldarius DSM 639]
          Length = 276

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 105/255 (41%), Gaps = 23/255 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ N+ R++ +T   +K AEGS LVK G+T +L    LEE  P +      G + 
Sbjct: 27  VRLDGRKPNEYRQLKVTLGYAKKAEGSALVKLGNTLVLAGVKLEEDSP-YPDTPNQGNLI 85

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QI 112
               +LP +           G     S E+ R++ R+LR    +DLS L    G +   +
Sbjct: 86  VNVELLPLAYET-----FEPGPPDENSIELARIVDRSLRDSKAIDLSKLVIAPGKKVWTL 140

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL--------SQVLKGHVAAI 164
            +D  V+  DG    A +  +  A++D      +                 ++   V  +
Sbjct: 141 WVDVYVLDYDGNILDACMLASIAAIYDTKLPKVEVEGDEIKINKEERLSIPLVNYPVVTV 200

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           +   +  Y +VD +  E+S  D   +   T  G IV +Q +      +     AM + A+
Sbjct: 201 TTAKIGKYVVVDPNLDEESIADAKLSISYTKEGTIVGLQKNY-SGNLTFKEIDAMESTAR 259

Query: 225 DRIADLIKLQKDVIS 239
                L +  K  I+
Sbjct: 260 ATSQFLFEELKKQIN 274


>gi|328712784|ref|XP_001945013.2| PREDICTED: exosome complex exonuclease RRP41-like [Acyrthosiphon
           pisum]
          Length = 249

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 92/245 (37%), Gaps = 25/245 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGW 58
           +R  GR+  ++R I     V    +GS  ++ G+T ++       ++             
Sbjct: 9   LRTDGRRSGELRRIRCKMGVFNQPDGSAYLEQGNTKVVAAIYGPHEIRTNRAKAPNDSAV 68

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           I  +Y M   S   R +R      +  +S E+   + +A+ + +        QI I   V
Sbjct: 69  INCQYSMATFSRSERKRRP-----RDNKSAELTLHLKQAMATAIKTDLYPKSQIDIFVQV 123

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDL 177
           +Q+DGG  +  +  A +AL D    ME+              V + +  +  G  P+VD+
Sbjct: 124 LQSDGGNYSVCVNAATLALIDAGIAMEE-------------FVISCTSSLANGETPLVDI 170

Query: 178 DYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            + E++         ++  SG I  ++ S        +H   +L  A      + +    
Sbjct: 171 SHLEETMGGPSLTVAILPISGKIAMLETSQR---IHINHLEPVLTEAVRGCRYIYENLNK 227

Query: 237 VISNE 241
           +I   
Sbjct: 228 IIKKH 232


>gi|330835837|ref|YP_004410565.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera cuprina
           Ar-4]
 gi|329567976|gb|AEB96081.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera cuprina
           Ar-4]
          Length = 283

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 97/232 (41%), Gaps = 23/232 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ N  R +S+T   +K A+GS LVK GDT +L    +EE  P +      G +  
Sbjct: 28  RNDGRKFNDYRPLSITLGYAKKADGSALVKLGDTTVLAGVKIEEDEP-YSDTPNQGNLVV 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +LP +           G     + E+ R++ R+LR    VDLSAL    G R   + 
Sbjct: 87  NAELLPLAYET-----FEPGPPDENAIELSRVVDRSLRDSKAVDLSALVIEPGKRVWTVW 141

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH--------MEDCSNKFQLSQVLKGHVAAIS 165
           +D  V+   G    A    A  AL+D            +            ++  VA ++
Sbjct: 142 VDISVLDYGGNILDACTLSAVAALYDTKLPRIVNDNGTINIVKEDKTTPFPIRYPVATVT 201

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
              L  + +VD D  E+  +D   +F     GHIV +Q S E  +FSQ    
Sbjct: 202 IAKLGKFLVVDPDLEEEGIMDAKISFSYIPDGHIVGIQKSGE-GSFSQQEIE 252


>gi|242399325|ref|YP_002994749.1| Probable exosome complex exonuclease 2 [Thermococcus sibiricus MM
           739]
 gi|242265718|gb|ACS90400.1| Probable exosome complex exonuclease 2 [Thermococcus sibiricus MM
           739]
          Length = 269

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/256 (23%), Positives = 103/256 (40%), Gaps = 23/256 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR     R +++   V + AEGS LVK G+T +L    +E   P +      G IT 
Sbjct: 21  RIDGRGLEDFRPLTVETNVIEKAEGSALVKLGNTQVLVGIKVELGEP-FPDLPDMGVITT 79

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113
               +P ++          G     + E+ R+I R +R    +DL  L        R I 
Sbjct: 80  NVEFVPLASPT-----FEPGPPDESAIELARIIDRGIRESQAIDLEKLVIVPGKLVRVIF 134

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ--------LSQVLKGHVAAIS 165
           ID  V+  DG    A+  GA  AL        D + + +            +K     ++
Sbjct: 135 IDVHVLDHDGNLLDASGIGAIAALLSTKIPKVDYNEEIEEVVMLEEYEKLPVKRIPIPVT 194

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
              + G  +VD ++ E+  +D        ++G+I  VQ S E  +F  +     ++LA  
Sbjct: 195 LAKIGGNLVVDPNFEEEQVMDGKITITTDENGYISAVQKS-EGGSFKLEEVVYAVDLAYK 253

Query: 226 RIADLIKLQKDVISNE 241
           +  ++ K+    I  E
Sbjct: 254 KAEEVRKVVFGAIKEE 269


>gi|15920654|ref|NP_376323.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus tokodaii str.
           7]
 gi|29336897|sp|Q975G9|ECX2_SULTO RecName: Full=Probable exosome complex exonuclease 2
 gi|15621437|dbj|BAB65432.1| 275aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 275

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 66/255 (25%), Positives = 104/255 (40%), Gaps = 23/255 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ +  R IS+T   +K AEGS LVK GDT +L    LEE+ P +      G + 
Sbjct: 27  IRLDGRKNSDYRPISVTLNYAKKAEGSALVKLGDTMVLAGVKLEEEEP-FPDTPNQGNLV 85

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QI 112
               +LP +           G     + E+ R++ R+LR    VDLS L    G +    
Sbjct: 86  VNVELLPLAYET-----FEPGPPDENAIELARVVDRSLRDSKAVDLSKLVIIPGKKVWTA 140

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC--------LQHMEDCSNKFQLSQVLKGHVAAI 164
            +D  V+   G    A    A  AL++           +++    +      +   V  +
Sbjct: 141 WVDVYVLDYGGNVLDACTLAAVAALYNTKLPKVEIEGDNVKIIKEEKTDVTPIAYPVVTV 200

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           +   +  Y +VD    E+S  DV  +F     G IV +Q S    + S        +LA+
Sbjct: 201 TVAKIGKYLVVDPSLDEESIADVKISFSYVQDGRIVGMQKS-NFGSLSLQEVDVAESLAR 259

Query: 225 DRIADLIKLQKDVIS 239
                L +  K  I+
Sbjct: 260 SASQKLFEELKKQIN 274


>gi|299742531|ref|XP_001832547.2| exosome component 4 [Coprinopsis cinerea okayama7#130]
 gi|298405226|gb|EAU89296.2| exosome component 4 [Coprinopsis cinerea okayama7#130]
          Length = 263

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 94/239 (39%), Gaps = 21/239 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHGWI 59
            R  GR++ ++R++S+       A+GS L+  G T +L +     +  M          I
Sbjct: 16  FRSDGRRQYELRDLSIDLSRHGEADGSALISHGLTQVLVSVHGPREAKMRSHTFHDRANI 75

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             E  +   STG R KR     +   R  E    I      VV  S     QI I   ++
Sbjct: 76  NVEVTVASFSTGERRKRL----KGDKRILEFAATIKSTFEPVVRTSLYPRSQIDIYIQIL 131

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           Q DGGT    I G  +AL +    M D              V AIS G+    P++DL  
Sbjct: 132 QQDGGTLQTCINGTTLALINAGIPMSD-------------FVCAISGGVHSTSPMLDLTT 178

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E++ +      VM  S  +V V           + F  +L LA+D  A L K  K+ +
Sbjct: 179 LEENDVPHVTVAVMPKSKKVVLVTM---ETRLHVERFEEVLCLARDAAAVLHKEMKEAV 234


>gi|312137049|ref|YP_004004386.1| ribosomal RNA-processing protein rrp42 [Methanothermus fervidus DSM
           2088]
 gi|311224768|gb|ADP77624.1| ribosomal RNA-processing protein RRP42 [Methanothermus fervidus DSM
           2088]
          Length = 270

 Score =  175 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 103/246 (41%), Gaps = 22/246 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR   + R+I +   V   AEGS  VK GDT +L         P +  N   G I  
Sbjct: 26  RLDGRSFYEFRDIKIKTGVISKAEGSARVKLGDTQVLVGVKPTIGEP-FPDNPNLGIIIT 84

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQ--II 113
              +LP ++          G    RS E+ R++ R +R   ++DL  L    G +   + 
Sbjct: 85  NSELLPMASPT-----FEPGPPDERSIELARVVDRCIRESNMLDLEKLCIIEGEKVWILF 139

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH---MEDCSNKFQLSQV----LKGHVAAISC 166
           ID  ++  DG    A++ GA  AL D       +ED       S V    +K  VA  + 
Sbjct: 140 IDLHILDYDGNLFDASVLGAVAALMDTKLPKVSIEDDEVVIDDSSVELLDIKDKVAMCTF 199

Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             +    ++D    E+  +    +  M   G I  +Q    + + S++     +N+A+++
Sbjct: 200 AKIGDELVLDPSLEEEEILTARLSIGMNSEGKICAMQKGG-KGSLSREDISKAINIAEEK 258

Query: 227 IADLIK 232
             +L++
Sbjct: 259 TPELLQ 264


>gi|3341558|emb|CAA13123.1| z11f [Vibrio cholerae]
          Length = 138

 Score =  175 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 66/140 (47%), Positives = 90/140 (64%), Gaps = 2/140 (1%)

Query: 101 VVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160
           +VDL A+G   I +DCDVIQADGGTRTA+ITGA VAL D   H+   +        +KGH
Sbjct: 1   MVDLEAMGEIMITVDCDVIQADGGTRTASITGASVALADAFAHL--IAKGQLKKNPMKGH 58

Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           VAA+S G+L    + DL+Y EDS  D D N VMT+ G ++E+QG+AE   FS +    +L
Sbjct: 59  VAAVSVGILGEDVLCDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELL 118

Query: 221 NLAKDRIADLIKLQKDVISN 240
            +AK  IAD++ +QK  + +
Sbjct: 119 AVAKKGIADIVAVQKASLLD 138


>gi|315229928|ref|YP_004070364.1| exosome complex exonuclease 2 [Thermococcus barophilus MP]
 gi|315182956|gb|ADT83141.1| exosome complex exonuclease 2 [Thermococcus barophilus MP]
          Length = 270

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 103/256 (40%), Gaps = 23/256 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R + +   V + AEGS  VK G+T +L    L+   P +      G +T 
Sbjct: 21  RIDGRSLEDLRPLEVKVNVIEKAEGSAWVKLGNTQVLVGIKLDLGEP-FPDLPDKGVMTT 79

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113
              ++P ++          G    R+ E+ R++ R +R    +DL  L        R + 
Sbjct: 80  NVELVPLASPT-----FEPGPPDERAIELARVVDRGIRESQAIDLEKLVIIPGKLVRVVF 134

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQL----SQVLKGHVAAIS 165
           ID  V+  DG    A   GA  AL       +++ E+      L       +      +S
Sbjct: 135 IDVHVLDHDGNLVDATGIGAIAALLSTKMPKIEYNEETGEVMMLDEYEPLPVTKIPIPVS 194

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
              + G  +VD +  E+  +D        ++G+I  VQ S E  +F  +     +++A  
Sbjct: 195 FAKIGGTIVVDPNLEEEHVMDGKLTITTDENGYISAVQKS-EGGSFKLEEVMYAVDVAFK 253

Query: 226 RIADLIKLQKDVISNE 241
           +  ++ +   + +  +
Sbjct: 254 KAQEIREKILEAVGKK 269


>gi|288930698|ref|YP_003434758.1| 3' exoribonuclease [Ferroglobus placidus DSM 10642]
 gi|288892946|gb|ADC64483.1| 3' exoribonuclease [Ferroglobus placidus DSM 10642]
          Length = 259

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 98/244 (40%), Gaps = 15/244 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +++R+I +   V + AEGS LVK G+T +L    ++   P +      G I  
Sbjct: 23  RIDGRKFDEIRKIEIQTGVIEKAEGSALVKLGNTQVLVGVKMQPGEP-FPDAPNKGIIIT 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------II 113
              ++P ++          G     + E+ R++ R +R    VDL  L   +      I 
Sbjct: 82  NAELVPLASPT-----FEPGPPDENAIELARVVDRGIRESEAVDLEKLCIEEGEKVWLIF 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID   +  DG    A+  GA  AL +     E           ++    AI+  ++    
Sbjct: 137 IDIWALDDDGNLLDASALGAIAALLNTTVPAERFEVGDDFPLPVRDLPVAITSLIVENKI 196

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +VD    E S              +IV +Q S       ++ F+  + L+  +  ++ KL
Sbjct: 197 LVDPIKDETSVAKNFLTITTDSEDNIVAIQKSG-SYLLPEEKFYEAIELSIRKAREVRKL 255

Query: 234 QKDV 237
             +V
Sbjct: 256 LAEV 259


>gi|307104174|gb|EFN52429.1| hypothetical protein CHLNCDRAFT_12102 [Chlorella variabilis]
          Length = 241

 Score =  172 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 92/244 (37%), Gaps = 23/244 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWI 59
           +RL GR+  ++R++     V   A+GS L + G+T +L      + V      + +   +
Sbjct: 8   LRLDGRRPKELRQLRAELGVLSSADGSALFEMGNTRVLAAVFGPKPVEQRSQEDERRAIV 67

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             EY M   STG         G+   R+ EI   I   +   +    L   QI I   V+
Sbjct: 68  KCEYAMASFSTGE----RRRRGKADRRATEIGMAIRNTMEQTILTELLPRSQIDIYVQVL 123

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGGTR             C      C      +  ++  VA+ + G L    ++DL+Y
Sbjct: 124 QADGGTR-------------CACINAACMAAAAAAIPMRDLVASCAAGYLESTALLDLNY 170

Query: 180 GEDSTIDVDANFVM--TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            EDS    D    +       +V +Q   +    S + F  +L L       +    +  
Sbjct: 171 MEDSGGGPDVAVAIHANHEDRVVLLQ---QDNRLSIETFEEVLELGVAGCRAVAAFMRQQ 227

Query: 238 ISNE 241
           +   
Sbjct: 228 LLQH 231


>gi|298674552|ref|YP_003726302.1| 3' exoribonuclease [Methanohalobium evestigatum Z-7303]
 gi|298287540|gb|ADI73506.1| 3' exoribonuclease [Methanohalobium evestigatum Z-7303]
          Length = 260

 Score =  172 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 98/239 (41%), Gaps = 15/239 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R  +++R+IS+   +   AEGS  V +GDT L+    L+   P +      G I  
Sbjct: 23  REDNRAFDEIRDISIETDIIGNAEGSAKVYWGDTQLIVGVKLQVGEP-FPDTPDKGIIIT 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSR------QII 113
              + P ++ +       +G     + EI R++ R +R    +DL+ L          + 
Sbjct: 82  SLELNPIASPD-----FEAGPPKEDAIEIARVVDRGIRESGAIDLNKLCITEGEEVWTVF 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID +V+  DG    AA  GA  AL       E       +   ++     IS   + G  
Sbjct: 137 IDVNVLNDDGNIMDAASIGAIAALMTTNIPAESEGYGEDMMMPVRDIPVGISLVDISGEL 196

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +VD  Y E+S  D     V    G I  +Q S    + +++      N+A+ R +++ +
Sbjct: 197 MVDPTYNEESVCDTKITVVSNQDGSISAMQKSG-TGSLTEEKVLQAANIARTRASEIRE 254


>gi|156398683|ref|XP_001638317.1| predicted protein [Nematostella vectensis]
 gi|156225437|gb|EDO46254.1| predicted protein [Nematostella vectensis]
          Length = 268

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 24/244 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ +++R + L   V   A+GS  ++  +T ++       + P     +  G +T 
Sbjct: 36  RQDGRRPDELRPMFLRAGVVSQAKGSAYIEMKNTKVICAIYGPREAPRRQEFSMKGRLTC 95

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           E+   P S   R K       Q    +E   ++ +AL   V L      Q+ I   V++ 
Sbjct: 96  EFKFAPFSCIYRRKHI-----QDAEEKENSYLVVQALEPAVCLEKFPKAQVDIYITVLEN 150

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DG   +A I  A VAL      M D              V+A +      + ++D    E
Sbjct: 151 DGSALSAGIICASVALAMAGIEMLDL-------------VSACTMVQSDNHILMDPCEKE 197

Query: 182 ---DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
               S        ++     +  V G  +    +QD     L+   +  A ++ + +  +
Sbjct: 198 IHSSSASGHTMVAILPS---LNVVSGLVQEGELTQDAATKALSSCIEGCARILPIMQQAL 254

Query: 239 SNEV 242
              +
Sbjct: 255 VKNI 258


>gi|240104092|ref|YP_002960401.1| exosome complex RNA-binding protein Rrp42 [Thermococcus
           gammatolerans EJ3]
 gi|259645408|sp|C5A2B8|ECX2_THEGJ RecName: Full=Probable exosome complex exonuclease 2
 gi|239911646|gb|ACS34537.1| 3'-5' exoribonuclease, exosome complex exonuclease 2, Rrp42p-like
           protein (Rrp42p) [Thermococcus gammatolerans EJ3]
          Length = 273

 Score =  171 bits (434), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 102/255 (40%), Gaps = 23/255 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   + R+I +     + AEGS  V+ G T +L    ++   P +      G +T 
Sbjct: 24  RIDGRSFEEYRDIEIKTGFIEKAEGSAWVRLGGTRVLVGIKVDVGEP-FPDLPDRGVMTT 82

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113
              ++P ++          G    R+ E+ R+I R +R    V+L  L        R + 
Sbjct: 83  NVELVPLASPT-----FEPGPPDERAIELARVIDRGIRESQAVELEKLVIVPGKLVRVVF 137

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQL----SQVLKGHVAAIS 165
           ID  V+  DG    A    A  AL       +++ E+     +L       +K     ++
Sbjct: 138 IDVHVLDHDGNLFDATGLAAMAALMTTKIPKVEYNEETGEIIKLDEYEPLPVKHVPIPVT 197

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
              +    IVD +  E++ +D        ++GHI  VQ   E  +F  +     ++ A  
Sbjct: 198 FAKIGSSIIVDPNLDEETVMDSRLTITTDETGHISAVQK-GEGGSFKLEEVMYAIDTALK 256

Query: 226 RIADLIKLQKDVISN 240
           +  +L K+  + + +
Sbjct: 257 KADELRKILLEAVGS 271


>gi|41615042|ref|NP_963540.1| exosome complex exonuclease Rrp41 [Nanoarchaeum equitans Kin4-M]
 gi|40068766|gb|AAR39101.1| NEQ248 [Nanoarchaeum equitans Kin4-M]
          Length = 233

 Score =  171 bits (434), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 58/259 (22%), Positives = 92/259 (35%), Gaps = 48/259 (18%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR  N++R+  +   V   A+GS   + G+T  +    L+          +   + 
Sbjct: 1   MRFDGRDYNEIRDTEMKIGVISKADGSAYCRTGNTIAIAAVYLKP-------GREQSNLK 53

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y MLP +   R            R  E+  +I +AL   +    +    I    ++I+
Sbjct: 54  VSYRMLPFAGEERKG-----LGLTRREIELSYIIAKALEPAIIFEEIPYLTIEASVEIIK 108

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY- 179
           AD GTR AAI    +AL      M+               V AI+ G +    ++DL+  
Sbjct: 109 ADAGTRVAAINALSLALAHAGIPMKAL-------------VGAIAVGKVGEKIVLDLNKQ 155

Query: 180 GEDSTID------------------VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
            ED   +                  VD    M     I  +Q      +  +      + 
Sbjct: 156 EEDYDSEIIKKELPQYYEYYGEGKAVDIPMAM-YKNKITLLQLDG---SIDRKSLLEAIK 211

Query: 222 LAKDRIADLIKLQKDVISN 240
           L KD I  +I LQK  I +
Sbjct: 212 LGKDGIKRMIDLQKIAIED 230


>gi|156937004|ref|YP_001434800.1| exosome complex RNA-binding protein Rrp42 [Ignicoccus hospitalis
           KIN4/I]
 gi|156565988|gb|ABU81393.1| ribosomal RNA-processing protein RRP42 [Ignicoccus hospitalis
           KIN4/I]
          Length = 276

 Score =  171 bits (433), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 59/256 (23%), Positives = 103/256 (40%), Gaps = 23/256 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+  R+ +Q R I +T  V   A GS LV+ G+T +L    +E   P +      G +  
Sbjct: 28  RIDKRRLDQYRPIKITLGVGGKAHGSALVEIGNTKVLAGVKVEVGKP-FKDVPDAGVLNV 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSR--QII 113
              +LP ++      E   G     + E+ R+I RALR   V+DL  L    G +   + 
Sbjct: 87  NAELLPLASS-----EFEPGPPDENAIELARVIDRALREPGVIDLKELVLIPGEKVLVVW 141

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH--------MEDCSNKFQLSQVLKGHVAAIS 165
           +D  V+  DG    A++  +  AL D              +     +    +   V +++
Sbjct: 142 LDVYVLDHDGNLFDASMLASMAALLDTRYPEYVVREDGSVEVDEANKRPLPIANKVVSVT 201

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
             +L    +VD    E+   D    F   + G +V +Q S   A    D      NLA  
Sbjct: 202 LNVLENLFMVDPTLEEEVVADGKIVFAFDERGRLVGLQKSG-PAWLDLDKSTTAFNLAYS 260

Query: 226 RIADLIKLQKDVISNE 241
           +  +L+++ +  ++  
Sbjct: 261 KYKELLEVLEKSLAER 276


>gi|298709840|emb|CBJ26180.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 244

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 91/243 (37%), Gaps = 22/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-IRNTKHGWI 59
           +R  GR+  ++R +     V K A+GS  ++ G T ++       +V     R    G +
Sbjct: 13  LRPDGRRGREIRRVRSRFGVFKGADGSAYLEMGQTKIIAIVKGPREVTRRQDRKYDTGIV 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             EY + P S   R KR     +      EI   +       + L      QI I   VI
Sbjct: 73  NCEYNVAPFSGSERKKRRPTERK----GMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVI 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           Q+DGG     I  A +AL D    M D              V A S G L G P++DL+Y
Sbjct: 129 QSDGGVLPVGINAASLALVDAGVAMSDL-------------VVACSAGYLDGMPVMDLNY 175

Query: 180 GEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E +         V+ +   ++  +     +    + F  +L  A D    + ++ +  +
Sbjct: 176 VEQALGGPYLPVAVLPEKDKLLLAKM---ESRLPLEIFEEVLRAATDACQQVHEVLRAAV 232

Query: 239 SNE 241
              
Sbjct: 233 KEH 235


>gi|147919674|ref|YP_686582.1| exosome complex RNA-binding protein Rrp42 [uncultured methanogenic
           archaeon RC-I]
 gi|121687882|sp|Q0W2Y7|ECX2_UNCMA RecName: Full=Probable exosome complex exonuclease 2
 gi|110621978|emb|CAJ37256.1| putative exosome complex exonuclease 2 [uncultured methanogenic
           archaeon RC-I]
          Length = 260

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 92/239 (38%), Gaps = 15/239 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ ++ R IS+   V   AEGS  VK GD+ ++    ++   P +      G I  
Sbjct: 23  RADGRKFDEFRAISVETGVINKAEGSARVKIGDSQVVVGVKIQPGEP-FPDTPDSGVIIT 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSR------QII 113
              ++P ++         SG     + E+ R++ R +R    +DLS L          + 
Sbjct: 82  NLELVPLASPT-----FESGPPREDAIELARVVDRGVRESGAIDLSKLCIESGQKVWMVF 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID  V+  DG    AA  GA  AL               +   L      ++   + G  
Sbjct: 137 IDVHVLDHDGNLMDAASLGAIAALKATKIPNSKFGLGEDVKLPLNDVPIGVTAVNIGGAI 196

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++D    E+S        +    G I  +Q S    T + D    ++ LAK++   L +
Sbjct: 197 MLDPSLDEESVAPCKLTVITNKEGAISGMQKSG-VGTLTPDQINHIIRLAKEKANVLRE 254


>gi|303281836|ref|XP_003060210.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458865|gb|EEH56162.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 245

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 107/241 (44%), Gaps = 23/241 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           +RL GR+  + R++     V   A+GS   + G+T ++       + V    R+ +   I
Sbjct: 9   LRLDGRRPKETRQMRCAMGVLPAADGSAEFRAGNTRVMCAVHGPRECVNRGERDDERAII 68

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             E+     STG R  R    G+   RS E+  +I +AL + V +      +I +   V+
Sbjct: 69  KCEFSQAAFSTGERRAR----GKGDRRSVELALVIRQALEATVLVHLAPRSEINVMIQVL 124

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGG R AAI  A +A+ +    M             K  +AA S G L G P++DL+Y
Sbjct: 125 QADGGVRAAAINAAVLAIANAGIPM-------------KDTMAACSAGYLDGTPLLDLNY 171

Query: 180 GEDSTIDVDANFVM--TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            E+    V  +     +    +V VQ   +    S + F  +  LA +  A + K+ ++ 
Sbjct: 172 VEEGGGGVRVHVATHASRGDKVVVVQTDNKA---SVEVFEPVHALAVEGCAVVQKVMREA 228

Query: 238 I 238
           +
Sbjct: 229 M 229


>gi|156550959|ref|XP_001603897.1| PREDICTED: similar to ENSANGP00000009222 [Nasonia vitripennis]
          Length = 270

 Score =  168 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 99/257 (38%), Gaps = 24/257 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----- 55
           +R  GR+  ++R I L   V   A+GS  ++ G T +L T     + P    N       
Sbjct: 12  LRADGRRPLELRRIRLRMGVFGQADGSAYLEQGKTKILATVYGPHQ-PRGKANANALKAV 70

Query: 56  HGWITAEYGMLPRST--GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            G +  +Y     S   G R K+     R   +SQE  + +  A+ ++++L      QI 
Sbjct: 71  KGIVNCQYSTAVFSFGAGERKKKP----RGDRKSQERSQQLRHAMEAIINLELFARSQID 126

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           I  +V+Q DG     A+  A +AL D    ++D +    ++            G   G  
Sbjct: 127 IFVEVLQVDGSDFCVAVNAATLALIDAGIPIKDYAIGCSVTVSDNLLGDDDDSG--QGTG 184

Query: 174 IVDLDYGEDSTIDVDANFVMTDSG--------HIVEVQGSAERATFSQDHFFAMLNLAKD 225
           I+D ++ E+ +  V  + V              ++   G+ +R   S+     +   A  
Sbjct: 185 ILDANWIEECSPGVTLSVVALPKVVDETETKSSVILCHGAGQRLHLSRLEPLRLR--ALQ 242

Query: 226 RIADLIKLQKDVISNEV 242
              D+  +    + + +
Sbjct: 243 GCRDIRAILDQAVKDHL 259


>gi|254172923|ref|ZP_04879597.1| exosome complex exonuclease RRP43 [Thermococcus sp. AM4]
 gi|214033079|gb|EEB73907.1| exosome complex exonuclease RRP43 [Thermococcus sp. AM4]
          Length = 273

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 102/255 (40%), Gaps = 23/255 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   + R+I +     + AEGS  V+ G T +L    ++   P +      G +T 
Sbjct: 24  RIDGRSFEEYRDIEIKTGFIEKAEGSAWVRLGGTRVLVGIKVDVGEP-FPDLPDRGVMTT 82

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113
              ++P ++          G    R+ E+ R+I R +R    V+L  L        R + 
Sbjct: 83  NVELVPLASPT-----FEPGPPDERAIELARVIDRGIRESQAVELEKLVIVPGKLVRVVF 137

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQL----SQVLKGHVAAIS 165
           ID  V+  DG    A    A  AL       +++ E+     +L       ++     ++
Sbjct: 138 IDVHVLDHDGNLFDATGLAAMAALLTTRVPKVEYNEETGEIVKLDEYEPLPVRRIPLPVT 197

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
              +    IVD +  E++ +D        ++GHI  VQ   E  +F  +     ++ A  
Sbjct: 198 FAKIGSSIIVDPNLDEETVMDSRITITTDETGHISAVQK-GEGGSFKLEEVMYAIDTALK 256

Query: 226 RIADLIKLQKDVISN 240
           +  +L K+  + + +
Sbjct: 257 KADELRKILLEAVGS 271


>gi|254168306|ref|ZP_04875152.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
 gi|197622815|gb|EDY35384.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
          Length = 270

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 100/241 (41%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +++R +++T+     AEGS LV  G+T +L    +E   P +      G +T 
Sbjct: 28  RVDGRHFDEIRNLTVTKGYIPRAEGSALVNLGNTRVLVGVKIEPGTP-FPDTPNMGILTT 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQ--II 113
              + P ++          G  G  + E+ R++ R +R    +DL  L    G +   + 
Sbjct: 87  NAELAPLASPT-----FEPGPPGEEAIELARVVDRGIREGHAIDLEKLVIEEGEKVWIVF 141

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID  V+  DG    AA  GA  AL + +               ++ +   ++   +  + 
Sbjct: 142 IDIHVLDYDGNLFDAAGYGALAALTNAIVPASRYDLGEDFKLPVQHYPVPVTFAKIGDWI 201

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD---RIADL 230
           + D +  E+S           + G I  +Q      TF+ +    ++N++ +   ++ ++
Sbjct: 202 VADPNLDEESIASARLTVATNEEGKINAMQK-GLSGTFTYEEVKKVINMSMNIGGKVREI 260

Query: 231 I 231
           I
Sbjct: 261 I 261


>gi|299689088|pdb|3L7Z|A Chain A, Crystal Structure Of The S. Solfataricus Archaeal Exosome
 gi|299689091|pdb|3L7Z|D Chain D, Crystal Structure Of The S. Solfataricus Archaeal Exosome
 gi|299689094|pdb|3L7Z|G Chain G, Crystal Structure Of The S. Solfataricus Archaeal Exosome
          Length = 271

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 101/251 (40%), Gaps = 19/251 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+    R +S+T   +K A+GS LVK G T +L    LE   P +      G + 
Sbjct: 27  IRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLI 85

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QI 112
               +LP +           G     + E+ R++ R+LR    +DL+ L    G     +
Sbjct: 86  VNVELLPLAYTT-----FEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTV 140

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            +D  V+   G    A    +  AL++     ++ +    N+      L   V  IS   
Sbjct: 141 WLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQISVNKNEVVGKLPLNYPVVTISVAK 200

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
           +  Y +VD D  E+S +D   +F  T    IV +Q S  + + S        N A+    
Sbjct: 201 VDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSG-KGSMSLQDIDQAENTARSTAV 259

Query: 229 DLIKLQKDVIS 239
            L++  K  + 
Sbjct: 260 KLLEELKKHLG 270


>gi|289595859|ref|YP_003482555.1| 3' exoribonuclease [Aciduliprofundum boonei T469]
 gi|289533646|gb|ADD07993.1| 3' exoribonuclease [Aciduliprofundum boonei T469]
          Length = 270

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 99/241 (41%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +++R +++T+     AEGS LV  G+T +L    +E   P +      G +T 
Sbjct: 28  RVDGRHFDEIRNLTVTKGYIPRAEGSALVNLGNTRVLVGVKIEPGTP-FPDTPNMGILTT 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQ--II 113
              + P ++          G  G  + E+ R++ R +R    +DL  L    G +   + 
Sbjct: 87  NAELAPLASPT-----FEPGPPGEEAIELARVVDRGIREGHAIDLEKLVIEEGEKVWIVF 141

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID  V+  DG    AA  GA  AL +                 ++ +   ++   +  + 
Sbjct: 142 IDIHVLDYDGNLFDAAGYGALAALTNATVPASRYDLGEDFKLPVQHYPVPVTFAKIGDWI 201

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD---RIADL 230
           + D +  E+S           + G I  +Q      TF+ +    ++N++ +   ++ ++
Sbjct: 202 VADPNLDEESIASARLTVATNEEGKINAMQK-GLSGTFTYEEVKKVINMSMNIGGKVREI 260

Query: 231 I 231
           I
Sbjct: 261 I 261


>gi|126031137|pdb|2JE6|A Chain A, Structure Of A 9-Subunit Archaeal Exosome
 gi|145579800|pdb|2JEA|A Chain A, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna
 gi|145579804|pdb|2JEB|A Chain A, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions
          Length = 277

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 104/255 (40%), Gaps = 23/255 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+    R +S+T   +K A+GS LVK G T +L    LE   P +      G + 
Sbjct: 29  IRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLI 87

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QI 112
               +LP +           G     + E+ R++ R+LR    +DL+ L    G     +
Sbjct: 88  VNVELLPLAYET-----FEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTV 142

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHVAAI 164
            +D  V+   G    A    +  AL++  +  +E  SN   +++        L   V  I
Sbjct: 143 WLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPVVTI 202

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           S   +  Y +VD D  E+S +D   +F  T    IV +Q S  + + S        N A+
Sbjct: 203 SVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSG-KGSMSLQDIDQAENTAR 261

Query: 225 DRIADLIKLQKDVIS 239
                L++  K  + 
Sbjct: 262 STAVKLLEELKKHLG 276


>gi|15897635|ref|NP_342240.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus solfataricus
           P2]
 gi|284174961|ref|ZP_06388930.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus solfataricus
           98/2]
 gi|29337006|sp|Q9UXC0|ECX2_SULSO RecName: Full=Probable exosome complex exonuclease 2
 gi|71042716|pdb|2BR2|A Chain A, Rnase Ph Core Of The Archaeal Exosome
 gi|71042718|pdb|2BR2|C Chain C, Rnase Ph Core Of The Archaeal Exosome
 gi|71042720|pdb|2BR2|E Chain E, Rnase Ph Core Of The Archaeal Exosome
 gi|71042722|pdb|2BR2|G Chain G, Rnase Ph Core Of The Archaeal Exosome
 gi|71042724|pdb|2BR2|I Chain I, Rnase Ph Core Of The Archaeal Exosome
 gi|71042726|pdb|2BR2|K Chain K, Rnase Ph Core Of The Archaeal Exosome
 gi|71042728|pdb|2BR2|M Chain M, Rnase Ph Core Of The Archaeal Exosome
 gi|71042730|pdb|2BR2|O Chain O, Rnase Ph Core Of The Archaeal Exosome
 gi|71042732|pdb|2BR2|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome
 gi|71042734|pdb|2BR2|S Chain S, Rnase Ph Core Of The Archaeal Exosome
 gi|71042736|pdb|2BR2|U Chain U, Rnase Ph Core Of The Archaeal Exosome
 gi|71042738|pdb|2BR2|W Chain W, Rnase Ph Core Of The Archaeal Exosome
 gi|83754538|pdb|2C37|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754540|pdb|2C37|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754542|pdb|2C37|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754544|pdb|2C37|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754546|pdb|2C37|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754548|pdb|2C37|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754550|pdb|2C37|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754552|pdb|2C37|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754554|pdb|2C37|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754556|pdb|2C37|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754558|pdb|2C37|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754560|pdb|2C37|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
           Rna
 gi|83754562|pdb|2C38|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754566|pdb|2C38|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754568|pdb|2C38|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754570|pdb|2C38|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754572|pdb|2C38|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754574|pdb|2C38|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754576|pdb|2C38|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754578|pdb|2C38|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754580|pdb|2C38|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754582|pdb|2C38|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|83754586|pdb|2C39|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754588|pdb|2C39|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754590|pdb|2C39|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754592|pdb|2C39|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754594|pdb|2C39|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754596|pdb|2C39|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754598|pdb|2C39|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754600|pdb|2C39|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754602|pdb|2C39|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754604|pdb|2C39|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754606|pdb|2C39|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|83754608|pdb|2C39|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
 gi|313507220|pdb|2C38|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|313507221|pdb|2C38|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
           Rna
 gi|6015744|emb|CAB57571.1| conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|13813902|gb|AAK41030.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261602404|gb|ACX92007.1| 3' exoribonuclease [Sulfolobus solfataricus 98/2]
          Length = 275

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 104/255 (40%), Gaps = 23/255 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+    R +S+T   +K A+GS LVK G T +L    LE   P +      G + 
Sbjct: 27  IRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLI 85

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QI 112
               +LP +           G     + E+ R++ R+LR    +DL+ L    G     +
Sbjct: 86  VNVELLPLAYET-----FEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTV 140

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHVAAI 164
            +D  V+   G    A    +  AL++  +  +E  SN   +++        L   V  I
Sbjct: 141 WLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPVVTI 200

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           S   +  Y +VD D  E+S +D   +F  T    IV +Q S  + + S        N A+
Sbjct: 201 SVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSG-KGSMSLQDIDQAENTAR 259

Query: 225 DRIADLIKLQKDVIS 239
                L++  K  + 
Sbjct: 260 STAVKLLEELKKHLG 274


>gi|302348935|ref|YP_003816573.1| Probable exosome complex exonuclease 2 [Acidilobus saccharovorans
           345-15]
 gi|302329347|gb|ADL19542.1| Probable exosome complex exonuclease 2 [Acidilobus saccharovorans
           345-15]
          Length = 280

 Score =  165 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 103/256 (40%), Gaps = 23/256 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R     R +S+   V   A+GS  VK G+T +L    LE  +P +      G + 
Sbjct: 27  VRSDQRDFATPRNLSIQVGVIDKADGSAWVKLGNTQVLVGVKLEVGIP-YRDTPNEGVLQ 85

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QI 112
               + P ++          G     + E+ R+I R+LR    +DLS+L    G +   +
Sbjct: 86  VNSELTPVASPT-----FEPGPPDENAVELSRVIDRSLRDPKAIDLSSLVIRPGEKAWVL 140

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF------QLSQVLK--GHVAAI 164
            ID  V+  DG    A++ G   AL +      + +         +    LK    VA +
Sbjct: 141 WIDIYVLDYDGNYFDASMLGVMAALMNTKVPEYEETESGEIIINREKGTPLKLNRRVALV 200

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           +   +  Y ++D +  E+   D        + G IV +Q S     +++D    ++++++
Sbjct: 201 TSVKVGDYILIDPNIDEELLADSRMVIAFDEQGTIVGMQKSGMGG-YTRDELLKVIDISR 259

Query: 225 DRIADLIKLQKDVISN 240
           +      KL    + +
Sbjct: 260 NASQVYFKLLDQALQS 275


>gi|21228726|ref|NP_634648.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina mazei
           Go1]
 gi|29336794|sp|Q8PTT7|ECX2_METMA RecName: Full=Probable exosome complex exonuclease 2
 gi|20907235|gb|AAM32320.1| Ribonuclease [Methanosarcina mazei Go1]
          Length = 266

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 89/237 (37%), Gaps = 15/237 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR     RE+ L   V   AEGS  V  G+T +L    L+   P +  +   G I  
Sbjct: 25  RQDGRGFKDFRELKLETNVISKAEGSAKVTLGNTQVLVGVKLQTGTP-FPDSQDEGVIIT 83

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113
              + P ++      E   G     + E+ R++ R +R    +D+  L          + 
Sbjct: 84  NLELNPIASP-----EFEPGPPREDAIEMARVVDRGIRESGAIDIKKLCITVGESVWIVF 138

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID  ++  DG    A+   A  AL   +   E       +   +K     I+   +    
Sbjct: 139 IDVHILNNDGNIIDASCLAAIAALMTTMVPNEQQGLGENVPLAMKEMPVGITLAKIGSKL 198

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           +VD    E++  +     V +  G +  +Q        ++   F  +++A ++ A++
Sbjct: 199 MVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMG-PVPLTEAELFEAIDMAIEKAAEI 254


>gi|20090627|ref|NP_616702.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina
           acetivorans C2A]
 gi|29336812|sp|Q8TGX5|ECX2_METAC RecName: Full=Probable exosome complex exonuclease 2
 gi|19915669|gb|AAM05182.1| tRNA nucleotidyltransferase [Methanosarcina acetivorans C2A]
          Length = 266

 Score =  165 bits (418), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 90/237 (37%), Gaps = 15/237 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR     R++ L   V   AEGS  V  G+T +L    L+   P +  +   G I  
Sbjct: 25  RQDGRGFKDFRDLKLETNVIVKAEGSAKVTLGNTQVLVGVKLQTGTP-FPDSQDEGVIIT 83

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113
              + P ++      E   G     + E+ R++ R +R    +D+  L          + 
Sbjct: 84  NLELNPIASP-----EFEPGPPREEAIEMARVVDRGIRESGAIDIKKLCITVGESVWIVF 138

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID  V+  DG    A+   A  AL   +   E       +   +K     I+   +    
Sbjct: 139 IDVHVLNDDGNIIDASCLAAIAALMTTMVPNEQQGLGEDVPLAMKEMPVGITIAKIGSKL 198

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           +VD    E++  +     V +  G +  +Q     +  ++   F  ++LA ++ A+L
Sbjct: 199 MVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMG-ISPLTEAELFEAIDLALEKAAEL 254


>gi|213407144|ref|XP_002174343.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus
           yFS275]
 gi|212002390|gb|EEB08050.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus
           yFS275]
          Length = 243

 Score =  164 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 90/237 (37%), Gaps = 22/237 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWI 59
           +R  GR+ N+MRE      V K A GS  ++ G+T +L       E         +  +I
Sbjct: 13  LRQDGRRWNEMREFDCRIGVEKTAHGSSFIQHGNTRVLCNVNGPSEPYIKGKSKQEKAFI 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             E    P S  +R KR     R   R QE    I R     + +      QI I  +V+
Sbjct: 73  NVELNFAPFSLIDRKKRH----RSDKRIQEQCVAIQRTFEQAIQVELYPKSQISISLNVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           + DGG     I  A +AL D    M D             +V   + G+     ++DL+ 
Sbjct: 129 EDDGGAIATCINAATLALIDAGIAMVD-------------YVCCATAGIYETQVLLDLNT 175

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL-IKLQK 235
            E+S I      V+   G +  +    +    S D F   L  A      + +++QK
Sbjct: 176 NEESDISWMTVGVLGTKGKVTYL---KQETKLSLDLFEPALTTAIAGCDHIALQMQK 229


>gi|212223176|ref|YP_002306412.1| exosome complex RNA-binding protein Rrp42 [Thermococcus onnurineus
           NA1]
 gi|226740342|sp|B6YSE7|ECX2_THEON RecName: Full=Probable exosome complex exonuclease 2
 gi|212008133|gb|ACJ15515.1| 3'-5' exoribonuclease [Thermococcus onnurineus NA1]
          Length = 272

 Score =  164 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 101/256 (39%), Gaps = 23/256 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR     R++ +   V + AEGS  VK G+T +L    ++   P +    + G IT 
Sbjct: 24  RVDGRSLEDYRDLEIKINVIEKAEGSAWVKLGNTQVLVGIKVDMGEP-FPDLPEKGVITT 82

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113
              ++P ++ +        G    R+ E+ R++ R +R    V+L  L        R + 
Sbjct: 83  NVELVPLASPS-----FEPGPPDERAIELARVVDRGIRESGAVELEKLVIVPGKLVRVVF 137

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ--------LSQVLKGHVAAIS 165
           ID  V+  DG    A+  GA  AL            +              +      ++
Sbjct: 138 IDVHVLDHDGNLLDASGIGAIAALMSAKMPKVVYDEESGEVQILDEYEPLPVSKMPIPVT 197

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
              + G  +VD +  E+  +D        ++G I  VQ S E  +F  +     ++LA  
Sbjct: 198 IAKVGGNLLVDPNLDEELVMDGRITITTDENGMISSVQKS-EGGSFKLEEVMYAIDLALT 256

Query: 226 RIADLIKLQKDVISNE 241
           + A++ +   + +  E
Sbjct: 257 KAAEIREKVLEAVGAE 272


>gi|282165296|ref|YP_003357681.1| probable exosome complex exonuclease 2 [Methanocella paludicola
           SANAE]
 gi|282157610|dbj|BAI62698.1| probable exosome complex exonuclease 2 [Methanocella paludicola
           SANAE]
          Length = 259

 Score =  164 bits (416), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 94/243 (38%), Gaps = 15/243 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ ++ R +++   V   AEGS  V  GD+ ++    ++   P ++     G I  
Sbjct: 23  RADGRKFDEFRPVTIKVGVIGKAEGSSDVMIGDSRVVVGVKIQPGEP-FMDTPDKGVIIT 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSR------QII 113
              ++P ++         +G     + E+ R++ R +R    +DLS L          + 
Sbjct: 82  NLELVPLASPT-----FETGPPREDAIELARVVDRGVRESEAIDLSKLCIESGQKVWMVF 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID  V+  DG    AA  GA  AL                   L+     ++   +    
Sbjct: 137 IDVHVLDHDGNLMDAASMGAIAALMSAKIPNAKFGLGEDAKLPLEDVPVGVTAVKIGSSI 196

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           I+D    E++        +    G +  +Q S    T + D    ++++AK++   L + 
Sbjct: 197 ILDPSLDEENVASCKLTVITNKEGALAGMQKSG-VGTLTPDEVKYIVHIAKEKANVLRQK 255

Query: 234 QKD 236
            ++
Sbjct: 256 LEE 258


>gi|229582055|ref|YP_002840454.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
           Y.N.15.51]
 gi|259645406|sp|C3NHC2|ECX2_SULIN RecName: Full=Probable exosome complex exonuclease 2
 gi|228012771|gb|ACP48532.1| 3' exoribonuclease [Sulfolobus islandicus Y.N.15.51]
          Length = 275

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/254 (25%), Positives = 105/254 (41%), Gaps = 23/254 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+    R +S+T   +K A+GS LVK G T +L    LE   P +      G +  
Sbjct: 28  RQDGRKLTDYRPLSITLNYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLIV 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +LP +           G     + E+ R++ R+LR    +DL+ L    G     + 
Sbjct: 87  NVELLPLAYET-----FEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVW 141

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHVAAIS 165
           +D  V+   G    A    +  AL++  +  +E  SN F++++        L   V  +S
Sbjct: 142 LDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVVTVS 201

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
              +  Y IVD D  E+S +D   +F  T    IV +Q S  + + S        N A+ 
Sbjct: 202 IAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSG-KGSMSLQDIDQAENTARL 260

Query: 226 RIADLIKLQKDVIS 239
               L++  K  + 
Sbjct: 261 VAVKLLEELKKQLG 274


>gi|239788290|dbj|BAH70834.1| ACYPI001085 [Acyrthosiphon pisum]
          Length = 213

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 80/203 (39%), Gaps = 22/203 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGW 58
           +R  GR+  ++R I     V    +GS  ++ G+T ++       ++             
Sbjct: 9   LRTDGRRSGELRRIRCKMGVFNQPDGSAYLEQGNTKVVAAIYGPHEIRTNRAKAPNDSAV 68

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           I  +Y M   S   R +R      +  +S E+   + +A+ + +        QI I   V
Sbjct: 69  INCQYSMATFSRSERKRRP-----RDNKSAELTLHLKQAMATAIKTDLYPKSQIDIFVQV 123

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDL 177
           +Q+DGG  +  +  A +AL D    ME+              V + +  +  G  P+VD+
Sbjct: 124 LQSDGGNYSVCVNAATLALIDAGIAMEE-------------FVISCTSSLANGETPLVDI 170

Query: 178 DYGEDSTIDVDANF-VMTDSGHI 199
            + E++         ++  SG +
Sbjct: 171 SHLEETMGGPSLTVAILPISGKV 193


>gi|227827678|ref|YP_002829458.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
           M.14.25]
 gi|229584882|ref|YP_002843384.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
           M.16.27]
 gi|259645402|sp|C3N5R4|ECX2_SULIA RecName: Full=Probable exosome complex exonuclease 2
 gi|259645405|sp|C3MVG5|ECX2_SULIM RecName: Full=Probable exosome complex exonuclease 2
 gi|227459474|gb|ACP38160.1| 3' exoribonuclease [Sulfolobus islandicus M.14.25]
 gi|228019932|gb|ACP55339.1| 3' exoribonuclease [Sulfolobus islandicus M.16.27]
          Length = 275

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/254 (25%), Positives = 105/254 (41%), Gaps = 23/254 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+    R +S+T   +K A+GS LVK G T +L    LE   P +      G +  
Sbjct: 28  RQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLIV 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +LP +           G     + E+ R++ R+LR    +DL+ L    G     + 
Sbjct: 87  NVELLPLAYET-----FEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVW 141

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHVAAIS 165
           +D  V+   G    A    +  ALH+  +  +E  SN F++++        L   V  +S
Sbjct: 142 LDVYVLDYGGNVLDACTLASVAALHNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVVTVS 201

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
              +  Y IVD D  E+S +D   +F  T    IV +Q S  + + S        N A+ 
Sbjct: 202 IAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSG-KGSMSLQDIDQAENTARL 260

Query: 226 RIADLIKLQKDVIS 239
               L++  K  + 
Sbjct: 261 VAVKLLEELKKQLG 274


>gi|227830375|ref|YP_002832155.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
           L.S.2.15]
 gi|229579193|ref|YP_002837591.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
           Y.G.57.14]
 gi|238619849|ref|YP_002914675.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
           M.16.4]
 gi|284997881|ref|YP_003419648.1| 3'exoribonuclease [Sulfolobus islandicus L.D.8.5]
 gi|259645403|sp|C4KHE3|ECX2_SULIK RecName: Full=Probable exosome complex exonuclease 2
 gi|259645404|sp|C3MQ47|ECX2_SULIL RecName: Full=Probable exosome complex exonuclease 2
 gi|259645407|sp|C3NED0|ECX2_SULIY RecName: Full=Probable exosome complex exonuclease 2
 gi|227456823|gb|ACP35510.1| 3' exoribonuclease [Sulfolobus islandicus L.S.2.15]
 gi|228009907|gb|ACP45669.1| 3' exoribonuclease [Sulfolobus islandicus Y.G.57.14]
 gi|238380919|gb|ACR42007.1| 3' exoribonuclease [Sulfolobus islandicus M.16.4]
 gi|284445776|gb|ADB87278.1| 3'exoribonuclease [Sulfolobus islandicus L.D.8.5]
          Length = 275

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/254 (25%), Positives = 105/254 (41%), Gaps = 23/254 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+    R +S+T   +K A+GS LVK G T +L    LE   P +      G +  
Sbjct: 28  RQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLIV 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +LP +           G     + E+ R++ R+LR    +DL+ L    G     + 
Sbjct: 87  NVELLPLAYET-----FEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVW 141

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHVAAIS 165
           +D  V+   G    A    +  AL++  +  +E  SN F++++        L   V  +S
Sbjct: 142 LDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVVTVS 201

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
              +  Y IVD D  E+S +D   +F  T    IV +Q S  + + S        N A+ 
Sbjct: 202 IAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSG-KGSMSLQDIDQAENTARL 260

Query: 226 RIADLIKLQKDVIS 239
               L++  K  + 
Sbjct: 261 VAVKLLEELKKQLG 274


>gi|323474736|gb|ADX85342.1| 3' exoribonuclease [Sulfolobus islandicus REY15A]
 gi|323477464|gb|ADX82702.1| 3' exoribonuclease [Sulfolobus islandicus HVE10/4]
          Length = 275

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/254 (25%), Positives = 105/254 (41%), Gaps = 23/254 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+    R +S+T   +K A+GS LVK G T +L    LE   P +      G +  
Sbjct: 28  RQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLIV 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +LP +           G     + E+ R++ R+LR    +DL+ L    G     + 
Sbjct: 87  NVELLPLAYET-----FEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVW 141

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQ-------VLKGHVAAIS 165
           +D  V+   G    A    +  AL++  +  +E  SN F++++        L   V  +S
Sbjct: 142 LDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVVTVS 201

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
              +  Y IVD D  E+S +D   +F  T    IV +Q S  + + S        N A+ 
Sbjct: 202 IAKIDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSG-KGSMSLQDIDQAENTARL 260

Query: 226 RIADLIKLQKDVIS 239
               L++  K  + 
Sbjct: 261 VAVKLLEELKKQLG 274


>gi|294495472|ref|YP_003541965.1| ribosomal RNA-processing protein RRP42 [Methanohalophilus mahii DSM
           5219]
 gi|292666471|gb|ADE36320.1| ribosomal RNA-processing protein RRP42 [Methanohalophilus mahii DSM
           5219]
          Length = 261

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 98/239 (41%), Gaps = 16/239 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ N++R+I+L   +   AEGS +V++GDT ++    ++   P +  +   G I  
Sbjct: 24  REDGRQFNELRDIALETGIIDKAEGSAMVQYGDTQVMVGVKMQVGTP-FPDSPAEGVIIT 82

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSR------QII 113
              + P ++ +       +G    ++ E+ R++ R +R    +D++ L          + 
Sbjct: 83  SMELNPIASPD-----FEAGPPREKAIEMGRIVDRGIRESGAIDINKLCITEGEEVWMVF 137

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID  V+   G    AA  GA  AL       E           ++     +S   +    
Sbjct: 138 IDVHVLNNSGNILDAASLGAIAALMTTTVPSEREGKGEDYPMPVREMPVGVSLVKIGDEM 197

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++D  YGE+S  +          G I  +Q S    + S         +AK++  ++I+
Sbjct: 198 VLDPTYGEESVCETRITISSNQDGSICSMQKSG-SGSLSPAQVVKASKIAKEK-GEIIR 254


>gi|40217447|emb|CAE46380.1| 3'-5' exoribonuclease [uncultured archaeon]
 gi|268323830|emb|CBH37418.1| 3'-5' exoribonuclase [uncultured archaeon]
          Length = 260

 Score =  162 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 98/239 (41%), Gaps = 15/239 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR     R+I + R + K AEGS  V+ GDT +L    +E   P +      G +  
Sbjct: 23  RADGRGFLDFRDIIVERDLIKKAEGSTRVQIGDTVVLVGVKVEPGEP-FPDTPNKGILMT 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              ++P ++      E  SG  G  S E+ R++ R +R    +DL  L    G +   I 
Sbjct: 82  NAELVPLASP-----EFESGPPGENSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMIF 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID   +  DG    AA  GA ++L +     E      + +  ++    A++   + G  
Sbjct: 137 IDIHTLDNDGNLVDAAALGAIMSLLNVAIPYEQYGLTGEDTLQIRDTPVAVTVVEIRGNL 196

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +VD +  E+S        +    G I  +Q S      +++    M  +  ++  ++ +
Sbjct: 197 LVDPNVYEESAATSKLTVISNADGSISGLQKSGSNG-LTEEKIVKMTEIGIEKAREIRE 254


>gi|18977939|ref|NP_579296.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus furiosus DSM
           3638]
 gi|29336823|sp|Q8U0M0|ECX2_PYRFU RecName: Full=Probable exosome complex exonuclease 2
 gi|18893709|gb|AAL81691.1| hypothetical protein PF1567 [Pyrococcus furiosus DSM 3638]
          Length = 277

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 99/255 (38%), Gaps = 23/255 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+  R     R I +   V + AEGS LVK G+T +L         P +      G +T 
Sbjct: 24  RIDDRGFEDYRPIEVEVGVIEKAEGSALVKLGNTQVLVGIKATLGEP-FPDTPNMGVMTT 82

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113
              ++P ++          G    R+ E+ R+I R +R    ++L  +        R + 
Sbjct: 83  NVELVPLASPT-----FEPGPPDERAIELARVIDRGIRESRALNLEKMVIAPGKIVRVVF 137

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQLSQ----VLKGHVAAIS 165
           ID  V+  DG    A   GA  AL +     + + E+      L +     ++    +++
Sbjct: 138 IDVHVLDHDGNLMDAIGIGAIAALLNARVPKVLYNEETGEVEILEEKEPLPVEKIPISVT 197

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
              +  Y +VD    E+  +D        ++GHI  VQ S E   F  +     +  A  
Sbjct: 198 FAKIGNYLVVDPTLEEEQIMDGRLTITTDETGHISAVQKS-EGGAFKLEEVMYAVETAFK 256

Query: 226 RIADLIKLQKDVISN 240
           +  ++ K+  + +  
Sbjct: 257 KAEEIRKIILNALEK 271


>gi|116754658|ref|YP_843776.1| exosome complex RNA-binding protein Rrp42 [Methanosaeta thermophila
           PT]
 gi|116666109|gb|ABK15136.1| ribosomal RNA-processing protein RRP42 [Methanosaeta thermophila
           PT]
          Length = 257

 Score =  161 bits (408), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 90/239 (37%), Gaps = 15/239 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   Q R I + R + K AEGS LVK G T ++    ++   P +      G I  
Sbjct: 22  RADGRSFTQYRPIEIERNIIKKAEGSALVKLGKTQVMVGIKIQPGEP-FPDAPNRGVIVT 80

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQ--II 113
              ++P ++          G       E+ R++ R +R    VDL AL    G +   I 
Sbjct: 81  NAELVPLASPI-----FEPGPPNEYGIELARVVDRGVRESGSVDLDALCIVPGEKVWIIF 135

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID  ++   G    A+  GA  AL                   ++    A +        
Sbjct: 136 IDIHILDDCGNIMDASSLGAIAALLGATVPASRFGLGEDFQLPVRDIPIATTAVEFGDVV 195

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           + D D  E++  D     +    G I  +Q S      S+D  + ++++A D   ++ +
Sbjct: 196 LFDPDVDEEAIADAKLTVITKADGTICGMQKSG-PGMLSEDQVYRIVDIACDNAREIRE 253


>gi|325959905|ref|YP_004291371.1| 3' exoribonuclease [Methanobacterium sp. AL-21]
 gi|325331337|gb|ADZ10399.1| 3' exoribonuclease [Methanobacterium sp. AL-21]
          Length = 263

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 22/247 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  ++ REISL   V + AEGS  VK G+T ++  A  +   P +      G +  
Sbjct: 22  RTDGRAFDEYREISLEAGVIEKAEGSARVKIGNTQIIIGAKPQIGTP-FGDTPNVGVLMT 80

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSR------QII 113
              +LP +  N       SG     S E+ R+  R +R   VVDL  L          I 
Sbjct: 81  NTELLPMAAPN-----FESGPPDENSVELSRVTDRCIREGEVVDLEKLCIVPGEKVWMIF 135

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF-------QLSQVLKGHVAAISC 166
           +D  V+  DG    AA+ G+  AL +         +          +   +       + 
Sbjct: 136 LDLHVVDYDGNLMDAAVLGSVAALMNTRLPEAKIIDDEVVLDYDNLIPLPINDTALMSTF 195

Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             +    I+D    E+  +    +  +T  G+I  +Q   E+ T +Q+     +++AK +
Sbjct: 196 AKIGEELIIDPSLEEEEVMGARLSIGITKDGNICAMQKGGEK-TLTQEEVLKAVSIAKIK 254

Query: 227 IADLIKL 233
            A+L KL
Sbjct: 255 TAELRKL 261


>gi|52549122|gb|AAU82971.1| tRNA nucleotidyltransferase [uncultured archaeon GZfos24D9]
          Length = 260

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 97/239 (40%), Gaps = 15/239 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR     R+I + R + K A+GS  V+ GDT +L    +E   P +      G +  
Sbjct: 23  RADGRGFLDFRDIIVERDLIKKADGSTRVQIGDTVVLVGVKVEPGAP-FPDTPNKGILMT 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              ++P ++      E  SG     S E+ R++ R +R    +DL  L    G +   + 
Sbjct: 82  NAELVPLASP-----EFESGPPNEDSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMVF 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID   +  DG    AA  GA  +L +     E      + +  ++    A++   + G  
Sbjct: 137 IDIHTLDNDGNLVDAAALGAITSLLNVTIPYERYGLTGEDTLQIRDTPVAVTVVEIGGNL 196

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +VD +  E+S        +    G I  +Q S      +++    M+ +  ++  ++ +
Sbjct: 197 LVDPNVYEESAATSKLTVISNADGSISGLQKSGSTG-LTEEKIVKMIEIGIEKAREIRE 254


>gi|52550027|gb|AAU83876.1| 3'-5' exoribonuclease [uncultured archaeon GZfos34H10]
          Length = 260

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 96/239 (40%), Gaps = 15/239 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR     R+I + R + K A+GS  V+ GDT +L    +E   P +      G +  
Sbjct: 23  RADGRGFLDFRDIIVERDLIKKADGSTRVQIGDTVVLVGVKVEPGEP-FSDTPNKGILMT 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              ++P ++      E  SG     S E+ R++ R +R    +DL  L    G +   + 
Sbjct: 82  NAELVPLASP-----EFESGPPNENSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMLF 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID   +  DG    AA  GA  +L +     E      + +  ++    A++   + G  
Sbjct: 137 IDIHTLDNDGNLVDAAALGAITSLLNVAIPYEQYGLTGEDTLQIRDTPVAVTVVEIGGNL 196

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +VD +  E+S        +    G I  +Q S      +++    M  +  ++  ++ +
Sbjct: 197 LVDPNVYEESAATSKLTVISNADGSISGLQKSGSNG-LTEEKIVKMAEIGIEKAREIRE 254


>gi|16082607|ref|NP_394748.1| exosome complex RNA-binding protein Rrp42 [Thermoplasma acidophilum
           DSM 1728]
 gi|29336948|sp|Q9HIP1|ECX2_THEAC RecName: Full=Probable exosome complex exonuclease 2
          Length = 260

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 89/239 (37%), Gaps = 16/239 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  ++ RE+++       A GS  V  G+T ++    +E   P +      G +T 
Sbjct: 26  RIDGRLPDEFRELTIIENYIPRANGSAYVALGNTRVVAGVKIEAGEP-FPDTPDQGVLTT 84

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113
              +LP +  +       +G     + E+ R++ R +R   ++    L   Q      + 
Sbjct: 85  NVELLPIAFPS-----FEAGPPNDLAIEVSRVVDRGIRESKMISPEKLVIEQGKKVWIVF 139

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +D +V+  DG    A+   A  AL + +        +      +     +++   +    
Sbjct: 140 LDINVLDYDGNLIDASTIAAVAALRNAVVPASKEGGE-DFKLPVSSTPISVTMVKIGDTL 198

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           + D    ED           T+ GHI  +Q   E   F+ +     + ++ +    L +
Sbjct: 199 VCDPSLEEDQICGGRITVTTTEDGHIRAMQK-GEIGAFTVEDVKKAVKMSLEVGKKLRE 256


>gi|10640638|emb|CAC12416.1| rRNA processing protein (yeast RRP45) related protein [Thermoplasma
           acidophilum]
          Length = 240

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 89/239 (37%), Gaps = 16/239 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  ++ RE+++       A GS  V  G+T ++    +E   P +      G +T 
Sbjct: 6   RIDGRLPDEFRELTIIENYIPRANGSAYVALGNTRVVAGVKIEAGEP-FPDTPDQGVLTT 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113
              +LP +  +       +G     + E+ R++ R +R   ++    L   Q      + 
Sbjct: 65  NVELLPIAFPS-----FEAGPPNDLAIEVSRVVDRGIRESKMISPEKLVIEQGKKVWIVF 119

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +D +V+  DG    A+   A  AL + +        +      +     +++   +    
Sbjct: 120 LDINVLDYDGNLIDASTIAAVAALRNAVVPASKEGGE-DFKLPVSSTPISVTMVKIGDTL 178

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           + D    ED           T+ GHI  +Q   E   F+ +     + ++ +    L +
Sbjct: 179 VCDPSLEEDQICGGRITVTTTEDGHIRAMQK-GEIGAFTVEDVKKAVKMSLEVGKKLRE 236


>gi|145592135|ref|YP_001154137.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum arsenaticum
           DSM 13514]
 gi|145283903|gb|ABP51485.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum arsenaticum DSM
           13514]
          Length = 276

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 59/256 (23%), Positives = 101/256 (39%), Gaps = 26/256 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q REI +   V K A+GS  VK G TH++    +    P +      G +  
Sbjct: 29  RVDGRALDQTREIEIKTGVVKTADGSAEVKLGKTHVIAGVKVGLGQP-FPDAPDEGVLVV 87

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSAL-----GSRQIII 114
              +LP ++          G     + E+ R++ R +R    VD   L      +  + +
Sbjct: 88  SAEVLPHASPY-----TEVGPPDESAIELARVVDRGIRHCGYVDFKKLAVEGGKAYVLWV 142

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHME----------DCSNKFQLSQVLKGHVAAI 164
           D  VI  DG    AA   +  AL +                D +NK  L         A+
Sbjct: 143 DLYVINDDGNLVDAANLASVAALKNTQLPAVVKDESGAVKLDRNNKSPLPLETSKVPVAV 202

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           S G +     +D ++ E+ ++D    F +++   IV  Q +     F+Q    A L+LA 
Sbjct: 203 SVGKIANVLFLDPNFEEELSLDGRVTFTISED-RIVAAQKTL--GYFTQPELEAALDLAI 259

Query: 225 DRIADLIKLQKDVISN 240
                 ++  K ++ +
Sbjct: 260 KGRDRYLEALKSILGS 275


>gi|301097298|ref|XP_002897744.1| exosome complex exonuclease RRP41-like protein [Phytophthora
           infestans T30-4]
 gi|262106765|gb|EEY64817.1| exosome complex exonuclease RRP41-like protein [Phytophthora
           infestans T30-4]
          Length = 777

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 86/258 (33%), Gaps = 41/258 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------ 54
           +R+ GR+  ++R I     +    +GS   + G+T ++       ++      +      
Sbjct: 25  LRVDGRRSEEVRRIRTRFGLFSRVDGSSYYEQGNTKVVAVVYGPRELRTAAAGSVNSGAA 84

Query: 55  --------------KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS 100
                             +  E+     +T  R  + +   ++     E+   + +   +
Sbjct: 85  AVGTGSGNAASNTQPRATVNCEFTQAAFATSERKPQRSGDRKK----LEMSLAVKQIFEA 140

Query: 101 VVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160
            +        QI I   V+ ADGG   A+I    +AL D    + D              
Sbjct: 141 CIQTQLYPRSQIDIFVQVLHADGGELPASINAITLALIDAGIALND-------------F 187

Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAM 219
           V A S G L    + DL+Y E+          +   +  +  +Q          + F ++
Sbjct: 188 VVASSAGYLQQTMLCDLNYAEEVARAPQMIIALNPRTQKLNLLQM---ECKLQLELFESL 244

Query: 220 LNLAKDRIADLIKLQKDV 237
           + +A +    +  L ++ 
Sbjct: 245 MEVATEGCNQIYDLLQNA 262


>gi|13541139|ref|NP_110827.1| exosome complex RNA-binding protein Rrp42 [Thermoplasma volcanium
           GSS1]
 gi|29336898|sp|Q97BZ4|ECX2_THEVO RecName: Full=Probable exosome complex exonuclease 2
 gi|14324526|dbj|BAB59453.1| nucleotidyltransferase [Thermoplasma volcanium GSS1]
          Length = 260

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 86/232 (37%), Gaps = 16/232 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  ++ REI++       A GS  V  G T ++    +E   P +      G +T 
Sbjct: 26  RIDGRLPDEFREITIIENYVPRANGSAYVALGKTRVVAGVKIEAGEP-FPDTPDQGVLTT 84

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113
              +LP +  +       +G     + E+ R++ R +R   ++    L   Q      + 
Sbjct: 85  NVELLPIAFPS-----FEAGPPNDLAIEVSRVVDRGIRESKMISPDKLVIEQGKKVWIVF 139

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +D +V+  DG    A    A  AL + +        +     V+   + +++   +    
Sbjct: 140 LDINVLDYDGNLIDACTIAAVSALRNAIVPASREGGEDFKLPVVNTPI-SVTMVKIGDTL 198

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
           + D    ED           T+ GHI  +Q   E   F+ D     + ++  
Sbjct: 199 VCDPSLEEDQICGGRITVTTTEDGHIRAMQK-GEIGVFTLDDVKKAIKMSLK 249


>gi|330508838|ref|YP_004385266.1| exosome complex exonuclease 2 [Methanosaeta concilii GP-6]
 gi|328929646|gb|AEB69448.1| exosome complex exonuclease 2 [Methanosaeta concilii GP-6]
          Length = 258

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 98/239 (41%), Gaps = 15/239 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q REIS+ R V + AEGS LVK G + +L    ++   P +  +   G I  
Sbjct: 22  RIDGRKFDQYREISIERDVIRKAEGSALVKLGSSQVLVGVKMQPGEP-FQDSPNRGVIIT 80

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL---GSRQII--- 113
              ++P ++ +        G       E+ R++ R +R    VDL AL     +++    
Sbjct: 81  NAELVPLASPS-----FEPGPPNEVGIELARLVDRGVRESKAVDLEALCIEPGKKVWIVF 135

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID  ++   G    AA  GA  AL                   ++    A +        
Sbjct: 136 IDVHILDDCGNILDAASLGAISALLCTKVPASRFGLGEDYILPIRDIPIATTAIEFSDVL 195

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           + D    E++  +     + T +G I  +Q S      + +  + ++++A ++  ++ +
Sbjct: 196 MFDPGVEEEAIANTKLTVITTTNGDICGMQKSG-TGMLNPEQVYRIIDIACEKAKEIRE 253


>gi|52548824|gb|AAU82673.1| 3'-5' exoribonuclease [uncultured archaeon GZfos19A5]
          Length = 257

 Score =  158 bits (401), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 96/239 (40%), Gaps = 15/239 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   + R+IS+ R V K AEGS  VK GDT +L    +E   P +      G I  
Sbjct: 23  REDGRGFREYRDISVERDVIKRAEGSARVKIGDTEVLVGVKVELGTP-FPDTPDKGVIIT 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              ++P ++         SG     S ++ R++ R +R    +DL  L    G +   + 
Sbjct: 82  NAELVPLASPK-----FESGPPNENSIQLARVVDRGIRGSETIDLDKLCIEEGEKVWMVF 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID  V+  +G    AA  GA  +L +     E      + +  ++    A++   + G  
Sbjct: 137 IDIHVLDDNGNLVDAAALGAITSLLNLRIPNERYGLTGENTLPMRDTPVAVTTVEIEGNI 196

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +VD  + E +        +    G +  +Q S       +     M+ +  ++  ++ K
Sbjct: 197 LVDPSFDEGNAAASSVTVISNADGALSGMQKSGSGG-LKEAQIAEMVEIGIEKAGEIRK 254


>gi|302672677|ref|XP_003026026.1| hypothetical protein SCHCODRAFT_80065 [Schizophyllum commune H4-8]
 gi|300099706|gb|EFI91123.1| hypothetical protein SCHCODRAFT_80065 [Schizophyllum commune H4-8]
          Length = 259

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 89/242 (36%), Gaps = 23/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGWI 59
           R  GR++ ++R++++       A+GS LV  G T +L +     + P     +      I
Sbjct: 14  RSDGRKQYELRDMTIDLSPRASADGSALVSHGLTQVLVSVYGPRE-PKQRSQSAHDRATI 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             E G  P S+G         GR   R+QE+   + +    VV  S      I +   ++
Sbjct: 73  NVEVGTAPFSSGE----RRKRGRGDKRTQELCYTVQQTFEPVVLTSIYPRSTIDVFITIL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           Q DG    A I    +AL                   L   V A+S G+     ++DL  
Sbjct: 129 QQDGSLIPACINATTLALICAGV-------------PLLDFVCAVSAGVHDTESMLDLTT 175

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            E++ +      VM  +G +V V             F  M  +A D    L +  K  I 
Sbjct: 176 LEENDLPWVNAAVMPKTGKVVMV---GLETRLHVQRFEEMFRIALDAAKVLHQEMKAAIQ 232

Query: 240 NE 241
           + 
Sbjct: 233 DR 234


>gi|52549527|gb|AAU83376.1| 3'-5' exoribonuclease [uncultured archaeon GZfos27G5]
          Length = 257

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 96/239 (40%), Gaps = 15/239 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  ++ R+IS+ R V K AEGS  VK GDT +L    +E   P +      G I  
Sbjct: 23  REDGRGFHEYRDISVERDVIKRAEGSARVKIGDTEVLVGVKVELGTP-FPDTPDKGVIIT 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              ++P ++         SG     S ++ R++ R +R    +DL  L    G +   + 
Sbjct: 82  NAELVPLASPK-----FESGPPNENSIQLARVVDRGIRGSETIDLDKLCIEEGEKVWMVF 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID  V+  +G    AA  GA  +L +     E      + +  ++    A +   + G  
Sbjct: 137 IDIHVLDDNGNLVDAAALGAITSLLNLRIPNERYGLTGENTLPMRDTPVAATMVEIEGNI 196

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +VD  + E +        +    G +  +Q S       +     M+ +  ++  ++ K
Sbjct: 197 LVDPSFDEGNAAASSVTVISNADGTLSGMQKSGSSG-LKEAQIAEMVEIGIEKAGEIRK 254


>gi|57641568|ref|YP_184046.1| exosome complex RNA-binding protein Rrp42 [Thermococcus
           kodakarensis KOD1]
 gi|73919277|sp|Q5JIR7|ECX2_PYRKO RecName: Full=Probable exosome complex exonuclease 2
 gi|57159892|dbj|BAD85822.1| exosome subunit Rrp42p homolog, 3'-5' exoribonuclease [Thermococcus
           kodakarensis KOD1]
          Length = 272

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 92/254 (36%), Gaps = 23/254 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR     R++ +   V + AEGS  V+ GDT +L     E   P +      G IT 
Sbjct: 24  RIDGRSFEDYRDLEIKVNVIEKAEGSAWVRLGDTQVLVGIKAELGEP-FPDLPDRGVITT 82

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113
              ++P ++          G     + E+ R++ R +R    VDL  L        R I 
Sbjct: 83  NVELVPLASPT-----FEPGPPDENAIELARVVDRGIRESQAVDLEKLVIVPGKLVRVIF 137

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQL----SQVLKGHVAAIS 165
           ID  V+   G    A+  GA  AL       + + E+      L       +      ++
Sbjct: 138 IDVHVLDHGGNLLDASGIGAIAALLSTKLPKVNYNEETGEVEILDEYEPLPVNHVPIPVT 197

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
              +    +VD    E+  +D        ++GHI   Q   E   F  +     L +A  
Sbjct: 198 FAKIGNSIVVDPSLDEERVMDGRLTITTDETGHISAAQK-GEAGAFKMEEVMYALEVALK 256

Query: 226 RIADLIKLQKDVIS 239
           +  ++ +     + 
Sbjct: 257 KGNEIREKVLKAVG 270


>gi|18313177|ref|NP_559844.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum aerophilum
           str. IM2]
 gi|29336869|sp|Q8ZVN0|ECX2_PYRAE RecName: Full=Probable exosome complex exonuclease 2
 gi|18160691|gb|AAL64026.1| 3' exoribonuclease family protein [Pyrobaculum aerophilum str. IM2]
          Length = 274

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 97/255 (38%), Gaps = 26/255 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q R + +   V K A+GS  VK G TH++    +    P +      G +  
Sbjct: 29  RVDGRGPEQTRNVEINVGVVKTADGSAEVKLGKTHVVAGVKVGLGQP-FPDAPDEGVLVV 87

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSAL-----GSRQIII 114
              +LP ++          G     + E+ R++ R +R    VD   L      +  + I
Sbjct: 88  NAEVLPHASPY-----TEVGPPDEFAIELARVVDRGIRHCGYVDFKKLAVEGGKAYVLWI 142

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHME----------DCSNKFQLSQVLKGHVAAI 164
           D  VI  DG     A   +  AL +    +           D +NK  L   +     A+
Sbjct: 143 DLYVINDDGNLIDVANLASVAALKNTQLPVVVKDEAGVVKLDRNNKAPLPVDISKAPIAV 202

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           S G +     +D  + E+ ++D    F  ++   IV  Q +     F+Q    A LNLA 
Sbjct: 203 SVGKIGNVLFLDPTFEEELSLDGRITFTFSED-KIVAAQKTL--GYFTQSEIEAALNLAL 259

Query: 225 DRIADLIKLQKDVIS 239
                L++  K  + 
Sbjct: 260 RGRDRLLEALKSALK 274


>gi|327400939|ref|YP_004341778.1| exosome complex exonuclease 2 [Archaeoglobus veneficus SNP6]
 gi|327316447|gb|AEA47063.1| exosome complex exonuclease 2 [Archaeoglobus veneficus SNP6]
          Length = 259

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 101/244 (41%), Gaps = 15/244 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ ++ R I +   +   AEGS LVK G+T ++    ++   P +      G I  
Sbjct: 23  RIDGRKFDEFRHIEIETNIIAKAEGSALVKLGNTQVVVGVKMQPGEP-FPDAPDKGIIIT 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------II 113
              ++P ++          G     S E+ R++ R +R    VDL+ L   +      I 
Sbjct: 82  NAELVPLASPT-----FEPGPPDENSIELARVVDRGIRESEAVDLTKLCIEEGEKVWLIF 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID   +  DG    A+   A  AL       E           ++    +++  ++    
Sbjct: 137 IDIHALDDDGNLMDASSLAAIAALLTTTVPAERFDVGEDFPLPVRDLPISVTSLIVNNRI 196

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +VD    E S  +         + +IV +Q S      S++ F+ +++++ ++  ++ +L
Sbjct: 197 LVDPSRDEVSVGEYFMTITTDQADNIVAMQKSG-SYLLSEEKFYELIDISIEKAREIREL 255

Query: 234 QKDV 237
            KDV
Sbjct: 256 LKDV 259


>gi|50550057|ref|XP_502501.1| YALI0D06776p [Yarrowia lipolytica]
 gi|49648369|emb|CAG80689.1| YALI0D06776p [Yarrowia lipolytica]
          Length = 287

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 85/242 (35%), Gaps = 21/242 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           +R  GR+ N++R            A+GS  V++G T ++ T     +       T    I
Sbjct: 58  LRTDGRRWNEIRNFDCKINTHPTSADGSSYVEWGHTKVVCTVDGPREPDNRQNTTDRAVI 117

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           +    +   ST  R+KR+    R   R  E+  +I + L   V        QI ++  VI
Sbjct: 118 SVNVNVASFSTETRIKRQ----RNDKRLAEMNILIRQLLEEAVLTKLNPRTQIAVNITVI 173

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
             DGG   A I  A +A+ D                 L  +V+A S G+     ++DL+ 
Sbjct: 174 AQDGGLLPACINAACLAMIDAGV-------------PLTDYVSACSSGVYSNNALIDLNT 220

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            E+  +      V+  S  I  +                +L  +      +  +    + 
Sbjct: 221 LEEQDVPFLTIGVIGKSDKISMLTL---ETQLPMASLEPVLATSLSGAHAIQDIMDAAVR 277

Query: 240 NE 241
             
Sbjct: 278 KH 279


>gi|72012895|ref|XP_785829.1| PREDICTED: similar to LOC495942 protein [Strongylocentrotus
           purpuratus]
 gi|115926426|ref|XP_001179028.1| PREDICTED: similar to LOC495942 protein [Strongylocentrotus
           purpuratus]
          Length = 192

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 64/189 (33%), Gaps = 21/189 (11%)

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
               I  +Y M   ST  R  R     +    S E+   + R   + +        QI I
Sbjct: 14  DKVIINCQYSMATFSTNERKNRPQGDRK----STEMSLHLQRTFEATIQTHLYPRSQIDI 69

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
              ++QADGG   A +  A +A+ +    M             K +V A S G +   P+
Sbjct: 70  FVQILQADGGNYCACVNAATLAIINAGIPM-------------KDYVCACSSGYVNNTPL 116

Query: 175 VDLDYGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
            D+ Y E+S         M   S  I   +          DH   +L +A     D+  +
Sbjct: 117 TDVSYLEESQGGPVVTVAMLPKSEQIALFKMDNR---LHVDHLEQVLEVASKGCKDMYAV 173

Query: 234 QKDVISNEV 242
               +   V
Sbjct: 174 MNAAVKEHV 182


>gi|288869793|ref|ZP_06409499.1| putative exosome complex exonuclease 2 [Methanobrevibacter smithii
           DSM 2374]
 gi|288860271|gb|EFC92569.1| putative exosome complex exonuclease 2 [Methanobrevibacter smithii
           DSM 2374]
          Length = 265

 Score =  154 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 89/246 (36%), Gaps = 22/246 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ ++ R+IS+   V   AEGS  VK GDT ++     +   P +      G +  
Sbjct: 25  REDGRELDEYRDISIETGVISKAEGSARVKIGDTQVIVGIKPQIGAP-FPDTPDLGVLMT 83

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL------GSRQII 113
              MLP +           G     S E+ R++ R +R   +VDL  L          + 
Sbjct: 84  NCEMLPMADPT-----FEPGPPSEDSIELARVVDRGIRESELVDLDKLCVEEGKHVWMLF 138

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-------VLKGHVAAISC 166
           ID  +I   G    A       AL          ++   +          +   VA  + 
Sbjct: 139 IDLHIIDNCGNLFDACELAVMAALKSTKLPSASIADDEVVLDHENTIDLPINNEVAMCTF 198

Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             +    I+D    E+       N  +T  G+I  +Q        +++  F  ++ A  +
Sbjct: 199 VKIGDKLILDPTLNEEKVASARLNVGVTKDGNICAMQKGG-ILPLTKEDIFYCVDKAVSK 257

Query: 227 IADLIK 232
             +L++
Sbjct: 258 TKELVE 263


>gi|14591332|ref|NP_143410.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus horikoshii
           OT3]
 gi|29336585|sp|O59224|ECX2_PYRHO RecName: Full=Probable exosome complex exonuclease 2
 gi|3257977|dbj|BAA30660.1| 274aa long hypothetical autoantigen like protein [Pyrococcus
           horikoshii OT3]
          Length = 274

 Score =  154 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 91/255 (35%), Gaps = 23/255 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+  R     R I +   + + AEGS LVK G T +L         P +      G +T 
Sbjct: 24  RIDDRGFEDYRPIEIEVGIIEKAEGSALVKLGSTQVLVGIKTTLGEP-FPDTPNMGVMTT 82

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113
              ++P ++          G    R+ E+ R+  R +R    ++L  +        R + 
Sbjct: 83  NVELVPLASPT-----FEPGPPDERAIELARVTDRGIRESRALNLEKMVIVPGKIVRVVF 137

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN--------KFQLSQVLKGHVAAIS 165
           ID  V+  DG    A    +  AL +      + +         + +    ++     ++
Sbjct: 138 IDVHVLDHDGNLMDAIGIASIAALLNAKVPKVEYNEETGEVEILEEKEPLPVERIPIPVT 197

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
              +    +VD    E+  +D        ++GHI  VQ   E   F  +     +  A  
Sbjct: 198 FAKIGNILVVDPSLEEELVMDGRLTVTTDETGHISAVQK-GEGGAFKLEEVMYAVETAFK 256

Query: 226 RIADLIKLQKDVISN 240
           +  ++ K+  + I  
Sbjct: 257 KAEEIRKIVLEAIKK 271


>gi|73669985|ref|YP_306000.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina barkeri
           str. Fusaro]
 gi|72397147|gb|AAZ71420.1| ribosomal RNA-processing protein RRP42 [Methanosarcina barkeri str.
           Fusaro]
          Length = 260

 Score =  154 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 91/245 (37%), Gaps = 15/245 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR     R+I L   V   AEGS  V  GDT +L    L+   P +  +   G I  
Sbjct: 22  RQDGRGFKDFRDIKLETNVIPKAEGSAKVTLGDTQVLVGVKLQPGTP-FPDSQDEGVIIT 80

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113
              + P ++      E   G     + E+ R++ R +R    +D+  L            
Sbjct: 81  NLELNPIASP-----EFEPGPPREEAIEMARVVDRGIRESGAIDIKKLCISVGESVWIAY 135

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID  V+  DG    A+   A  AL   +   E       +   +K     ++   +    
Sbjct: 136 IDVHVLNDDGNIIDASSLAAIAALMTTIVPNEQHGIGADVPLAMKEMPVGVTLAKIGSKL 195

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +VD    E +  +     V +  G +  +Q       F++      +++A ++ A++ KL
Sbjct: 196 MVDPSLDEGAVCETKLTVVSSSDGSVAGMQKMG-TVPFTEAEVLEAIDMACEKAAEIRKL 254

Query: 234 QKDVI 238
             + +
Sbjct: 255 YLEAL 259


>gi|326429591|gb|EGD75161.1| hypothetical protein PTSG_06814 [Salpingoeca sp. ATCC 50818]
          Length = 241

 Score =  154 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 94/242 (38%), Gaps = 23/242 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ N++R +     +  +A+GS   + GDT ++      ++     +    G + 
Sbjct: 10  LREDGRRANELRRVEANVGMFPHADGSAYFQQGDTKVVAIVNGPKQ--GVGKAGDAGKVV 67

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            ++ M   ST  R K      R   ++ E+   I     S +        QI I   V+Q
Sbjct: 68  CDFEMAAFSTTQRRK----PLRLDRKNAELGSKIASTFESAIMTDLYPRSQIEISVQVLQ 123

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGG    AI    +AL D    M                V A +  ++ G  ++D+++ 
Sbjct: 124 ADGGVLAVAINAVTLALMDAGVAM-------------TDFVCACTASVIDGTNVLDINHY 170

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           E S    +    V+  S  IV  +    ++    D +  + +LA      L+ L K  + 
Sbjct: 171 EASAQGPELTIAVLPSSSTIVMAEM---KSRVHGDLYAGLQDLAIVGGTTLLPLLKKAVH 227

Query: 240 NE 241
           + 
Sbjct: 228 DR 229


>gi|148642301|ref|YP_001272814.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter
           smithii ATCC 35061]
 gi|148551318|gb|ABQ86446.1| ribonuclease PH-related protein [Methanobrevibacter smithii ATCC
           35061]
          Length = 262

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 90/246 (36%), Gaps = 22/246 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ ++ R+IS+   V   AEGS  VK GDT ++     +   P +      G +  
Sbjct: 22  REDGRELDEYRDISIETDVISKAEGSARVKIGDTQVIVGIKPQIGAP-FPDTPDLGVLMT 80

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL------GSRQII 113
              MLP +           G     S E+ R++ R +R   +VDL  L          + 
Sbjct: 81  NCEMLPMADPT-----FEPGPPSEDSIELARVVDRGIRESELVDLDKLCVEEGKHVWMLF 135

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-------VLKGHVAAISC 166
           ID  +I   G    A       AL          ++   +          +   VA  + 
Sbjct: 136 IDLHIIDNCGNLFDACELAVMAALKSTKLPSASIADDEVVLDHENTIDLPINNEVAMCTF 195

Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             +    I+D    E+       N  +T  G+I  +Q     +  +++  F  ++ A  +
Sbjct: 196 VKIGDKLILDPTLNEEKVASARLNVGVTKDGNICAMQKGG-ISPLTKEDIFYCVDKAVSK 254

Query: 227 IADLIK 232
             +L++
Sbjct: 255 TKELVE 260


>gi|222444528|ref|ZP_03607043.1| hypothetical protein METSMIALI_00140 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434093|gb|EEE41258.1| hypothetical protein METSMIALI_00140 [Methanobrevibacter smithii
           DSM 2375]
          Length = 265

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 90/246 (36%), Gaps = 22/246 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ ++ R+IS+   V   AEGS  VK GDT ++     +   P +      G +  
Sbjct: 25  REDGRELDEYRDISIETDVISKAEGSARVKIGDTQVIVGIKPQIGAP-FPDTPDLGVLMT 83

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL------GSRQII 113
              MLP +           G     S E+ R++ R +R   +VDL  L          + 
Sbjct: 84  NCEMLPMADPT-----FEPGPPSEDSIELARVVDRGIRESELVDLDKLCVEEGKHVWMLF 138

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-------VLKGHVAAISC 166
           ID  +I   G    A       AL          ++   +          +   VA  + 
Sbjct: 139 IDLHIIDNCGNLFDACELAVMAALKSTKLPSASIADDEVVLDHENTIDLPINNEVAMCTF 198

Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             +    I+D    E+       N  +T  G+I  +Q     +  +++  F  ++ A  +
Sbjct: 199 VKIGDKLILDPTLNEEKVASARLNVGVTKDGNICAMQKGG-ISPLTKEDIFYCVDKAVSK 257

Query: 227 IADLIK 232
             +L++
Sbjct: 258 TKELVE 263


>gi|313226557|emb|CBY21703.1| unnamed protein product [Oikopleura dioica]
          Length = 216

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 81/208 (38%), Gaps = 25/208 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHG 57
            R  GR+  + R+I     V  +A+GS +++ G+T +L       +         + +  
Sbjct: 9   FRFDGRRAAEFRKIQGRLGVFDHADGSAILQQGNTKVLAAVFGPRQPMASQHGAVSQEKC 68

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +  EY     ++  R +R     R   ++QEI   + +   + +  +      I I  +
Sbjct: 69  IVDVEYSRAAFASAERKRR----ARGDKKAQEISLSLKKTFEATILTTLYPRSAISIFVE 124

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI--- 174
           V+QADGG     +  A +AL D                 ++    A+SCG+     +   
Sbjct: 125 VLQADGGDYAVCVNAATLALIDAGI-------------PIRDVCCAVSCGVAIKDNVAYS 171

Query: 175 -VDLDYGEDSTIDVDANFV-MTDSGHIV 200
            +DL Y E+S          M  +G +V
Sbjct: 172 LLDLAYSEESARIPTIVATGMPKTGEMV 199


>gi|15678709|ref|NP_275825.1| exosome complex RNA-binding protein Rrp42 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|29336572|sp|O26778|ECX2_METTH RecName: Full=Probable exosome complex exonuclease 2
 gi|295321489|pdb|2WNR|A Chain A, The Structure Of Methanothermobacter Thermautotrophicus
           Exosome Core Assembly
 gi|295321491|pdb|2WNR|C Chain C, The Structure Of Methanothermobacter Thermautotrophicus
           Exosome Core Assembly
 gi|295321493|pdb|2WNR|E Chain E, The Structure Of Methanothermobacter Thermautotrophicus
           Exosome Core Assembly
 gi|2621767|gb|AAB85187.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 271

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 96/246 (39%), Gaps = 22/246 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  ++ R+IS+   V   AEGS  VK G+T ++     +   P +    + G I  
Sbjct: 25  RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEP-FPDTPEMGVILT 83

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113
              +LP ++          G    RS E+ R++ R +R   ++DL  L          + 
Sbjct: 84  NSELLPMASPT-----FEPGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLF 138

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK-------FQLSQVLKGHVAAISC 166
           +D  +I  DG    AA+     AL D      +  +              +       + 
Sbjct: 139 LDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDGEVVINREKMQPLPVNRKALMCTF 198

Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             +    ++D    E+  +    +  +T+ G I  +Q   E    ++D     +++A ++
Sbjct: 199 AKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGE-GPLTRDDVLKAVSIAVEK 257

Query: 227 IADLIK 232
           +  LI+
Sbjct: 258 VPQLIE 263


>gi|313240640|emb|CBY32963.1| unnamed protein product [Oikopleura dioica]
          Length = 216

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 81/208 (38%), Gaps = 25/208 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHG 57
            R  GR+  + R+I     V  +A+GS +++ G+T +L       +         + +  
Sbjct: 9   FRFDGRRAAEFRKIQGRLGVFDHADGSAILQQGNTKVLAAVFGPRQPMASQHGAVSQEKC 68

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +  EY     ++  R +R     R   ++QEI   + +   + +  +      I I  +
Sbjct: 69  IVDVEYSRAAFASAERKRR----ARGDKKAQEISLSLKKTFEATILTTLYPRSAISIFVE 124

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI--- 174
           V+QADGG     +  A +AL D                 ++    A+SCG+     +   
Sbjct: 125 VLQADGGDYAVCVNAATLALIDAGI-------------PIRDVCCAVSCGVAIKDNVAYS 171

Query: 175 -VDLDYGEDSTIDVDANFV-MTDSGHIV 200
            +DL Y E+S          M  +G +V
Sbjct: 172 LLDLAYSEESARIPTIVATGMPKTGEMV 199


>gi|299470099|emb|CBN78128.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 270

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 86/240 (35%), Gaps = 20/240 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWIT 60
           R  GR    MR++ +   V  +A GS  V+F  T ++                ++ G + 
Sbjct: 43  REDGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQ 102

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            ++   P +     +RE   G++    +E+  ++ + L S + +  L    + +   V+Q
Sbjct: 103 CDFSYAPFAMPG-GRRETRGGKKDD-ERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQ 160

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGG    A T A +AL D    + D              V A S G      ++D    
Sbjct: 161 ADGGELAVATTCASMALADAGIELYDL-------------VTACSVGYCGTQMVLDPTKE 207

Query: 181 EDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           E+ +         M  S  +   Q   E   F        L L  D    + K+ +  + 
Sbjct: 208 EEKSGAGVMTIALMPGSQQVT--QWWQEGR-FDGQKVAEALELCTDGCGCVHKMMEAKLK 264


>gi|52548653|gb|AAU82502.1| tRNA nucleotidyltransferase [uncultured archaeon GZfos18B6]
          Length = 238

 Score =  152 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 98/238 (41%), Gaps = 17/238 (7%)

Query: 5   GR--QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE 62
           GR  +    R+I + R + K AEGS  V+ GDT +L    +E   P +      G +   
Sbjct: 2   GRWARILDFRDIIVERDLIKKAEGSTRVQIGDTVVLVGVKVEPGAP-FPDTPNKGVLMTN 60

Query: 63  YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QIII 114
             ++P ++      E  SG  G  S E+ R++ R +R    +DL  L    G +   I I
Sbjct: 61  AELVPLASP-----EFESGPPGENSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMIFI 115

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
           D   +  DG    AA  GA ++L +     E      + +  ++    A++   + G  +
Sbjct: 116 DIHTLDNDGNLVDAAALGAIMSLLNVTIPYEQYGLTGEDTLQIRDTPVAVTVVEIGGNLL 175

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           VD +  E+S        +    G I  +Q S      +++    M  +  ++  ++ +
Sbjct: 176 VDPNVYEESAATSKLTVISNADGSISGLQKSGSSG-LTEEKIVKMTEIGIEKAREIRE 232


>gi|284161629|ref|YP_003400252.1| 3' exoribonuclease [Archaeoglobus profundus DSM 5631]
 gi|284011626|gb|ADB57579.1| 3' exoribonuclease [Archaeoglobus profundus DSM 5631]
          Length = 259

 Score =  152 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 94/244 (38%), Gaps = 15/244 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +++R I +   + K AEGS  VK G+T ++    ++   P +      G I  
Sbjct: 23  RIDGRAFDEIRPIEIKTGLIKKAEGSAYVKLGNTQVVAGVKMQIGEP-FPDTPDQGIIIT 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------II 113
              ++P ++          G     + E+ R++ R +R    VDL  L   +      I 
Sbjct: 82  NAELVPLASPT-----FEPGPPDENAIELARVVDRGIRHSEAVDLKKLCIEEGEKVWIIF 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID   +  DG    A+   A  AL +     E           ++    AI+  +     
Sbjct: 137 IDIWALDDDGNLMDASALAAIAALLNTTVPAERFEVGDDFPLPVRDLPVAITSLVYDDKI 196

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +VD    E S            + +IV +Q S      S+  F  +L ++  +  ++ KL
Sbjct: 197 LVDPCRDELSVGKNTITITTDQNDNIVSIQKSG-PFLLSEKAFEEVLEVSIRKAREVRKL 255

Query: 234 QKDV 237
             DV
Sbjct: 256 LADV 259


>gi|19114994|ref|NP_594082.1| exosomal 3'-to-5' phosphorolytic exoribonuclease Ski6 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|21759394|sp|O42872|RRP41_SCHPO RecName: Full=Exosome complex component ski6; AltName:
           Full=Ribosomal RNA-processing protein 41
 gi|2706461|emb|CAA15919.1| exosomal 3'-to-5' phosphorolytic exoribonuclease Ski6 (predicted)
           [Schizosaccharomyces pombe]
          Length = 242

 Score =  152 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 85/241 (35%), Gaps = 21/241 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWI 59
           +R  GR+ ++MR       +     GS  ++ G+T +L       E V          ++
Sbjct: 12  LRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTFV 71

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             E  +   ST +  KR     +   R Q     +      ++        QI +   V+
Sbjct: 72  NVEINIASFSTIDVKKR----FKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVL 127

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           Q DG    + I    +AL D                 +K  V   + G++    ++DL+ 
Sbjct: 128 QDDGAVMASCINATTLALIDAGI-------------PVKDFVCCSTAGIVESDMLLDLNS 174

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            E+S +      V+ +   +V +Q      +   D+  +++N+A      +    +  + 
Sbjct: 175 LEESALSWLTVAVLGNIKKVVYMQL---ETSMHLDYLESVMNMAIAGSEHIYNTMQSAVR 231

Query: 240 N 240
            
Sbjct: 232 Q 232


>gi|304314829|ref|YP_003849976.1| exosome RNA binding protein [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588288|gb|ADL58663.1| predicted exosome RNA binding protein [Methanothermobacter
           marburgensis str. Marburg]
          Length = 267

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 99/246 (40%), Gaps = 22/246 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  ++ R+IS+   V   AEGS  VK G+T ++     +   P +    + G I  
Sbjct: 21  RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEP-FPDTPEMGVILT 79

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113
              +LP ++          G    RS E+ R++ R +R   ++DL  L          + 
Sbjct: 80  NSELLPMASPT-----FEPGPPDERSVELSRVVDRCVRESQMIDLEKLCIIEGSKVWMLF 134

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-------SQVLKGHVAAISC 166
           +D  +I  DG    AA+     AL D      +  +   L          +       + 
Sbjct: 135 LDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDGEVLVDRENMQPLPINRKALMCTF 194

Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             +    I+D    E+  +    +  +T+ G I  +Q   E A  ++D     +++A+++
Sbjct: 195 AKIGDEIILDPCLEEEDILTARLSIGVTEDGSICAMQKGGEGA-LTRDDVLRAVSIAREK 253

Query: 227 IADLIK 232
           +  LI+
Sbjct: 254 VPQLIE 259


>gi|1749490|dbj|BAA13803.1| unnamed protein product [Schizosaccharomyces pombe]
          Length = 242

 Score =  152 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 85/241 (35%), Gaps = 21/241 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWI 59
           +R  GR+ ++MR       +     GS  ++ G+T +L       E V          ++
Sbjct: 12  LRNDGRRWDEMRNFQCRFGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTFV 71

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             E  +   ST +  KR     +   R Q     +      ++        QI +   V+
Sbjct: 72  NVEINIASFSTIDVKKR----FKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVL 127

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           Q DG    + I    +AL D                 +K  V   + G++    ++DL+ 
Sbjct: 128 QDDGAVMASCINATTLALIDAGI-------------PVKDFVCCSTAGIVESDMLLDLNS 174

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            E+S +      V+ +   +V +Q      +   D+  +++N+A      +    +  + 
Sbjct: 175 LEESALSWLTVAVLGNIKKVVYMQL---ETSMHLDYLESVMNMAIAGSEHIYNTMQSAVR 231

Query: 240 N 240
            
Sbjct: 232 Q 232


>gi|20093818|ref|NP_613665.1| exosome complex RNA-binding protein Rrp42 [Methanopyrus kandleri
           AV19]
 gi|29336820|sp|Q8TYC2|ECX2_METKA RecName: Full=Probable exosome complex exonuclease 2
 gi|19886741|gb|AAM01595.1| Predicted exosome subunit, predicted exoribonuclease related to
           RNase PH [Methanopyrus kandleri AV19]
          Length = 267

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 97/252 (38%), Gaps = 22/252 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   + R I +   V   A GS LV+ G+T L+    LE   P +  +   G +  
Sbjct: 23  RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRP-YPDSPNEGALAV 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------II 113
              ++P +  +        G     + E+ R++ R +R   ++DL  L   +        
Sbjct: 82  NAELVPLADPS-----FEPGPPDENAIELSRVVDRGIRESEMIDLEELCIEEGEHCWVTF 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHM-------EDCSNKFQLSQVLKGHVAAISC 166
           +D  V+  DG    A++ G+  AL               +   +      +     +++ 
Sbjct: 137 VDIHVLDHDGNLFDASMIGSVSALSITEVPKAEVVDDEVEVMEEDTEPLAINDFPISVTI 196

Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             +  Y +VD    E+  +D      +T+SG +  VQ   E   F +      ++LA  +
Sbjct: 197 AKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQK-GELGDFPEHLLEDAIDLATKK 255

Query: 227 IADLIKLQKDVI 238
             ++ +  K  +
Sbjct: 256 AEEVRRTVKAQL 267


>gi|325189047|emb|CCA23575.1| exosome complex exonuclease RRP41like protein putati [Albugo
           laibachii Nc14]
          Length = 261

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 87/248 (35%), Gaps = 26/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV--------PMWIR 52
           +RL GR+E + R +     V   A+GS  ++ G+T +L       +V             
Sbjct: 18  LRLDGRREAETRRVRARLGVFHRADGSAYIEQGNTKVLVVVYGPREVDGTTLKNAKGAAS 77

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
             K   +  E      +T +R      S R+     E+   I +   S +  +     QI
Sbjct: 78  LVKKAIVHCECTQASFATSDRKVSRNASDRKN---VEMSSAIKQIFESCIFTNLYPQSQI 134

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            I   V+QADGG   A+I    +AL D    + D              V A + G +   
Sbjct: 135 SIYPQVLQADGGELAASINATSLALMDAGIALND-------------FVVASTAGFVQQK 181

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + DL+  E +         +        V      A  + + F +++ +A +    +  
Sbjct: 182 SLCDLNAFEQAARGPQITVAINPRSR--HVNYLKMEAKLALEVFESVMGMAINGCDRIGD 239

Query: 233 LQKDVISN 240
             + V+  
Sbjct: 240 SLQQVVRG 247


>gi|254570999|ref|XP_002492609.1| 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the
           exosome [Pichia pastoris GS115]
 gi|238032407|emb|CAY70430.1| 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the
           exosome [Pichia pastoris GS115]
 gi|328353384|emb|CCA39782.1| exosome complex component RRP41 [Pichia pastoris CBS 7435]
          Length = 246

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 90/242 (37%), Gaps = 21/242 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           +R+ GR+ N++R            A+GS  V+ G+T ++       +      NT+ G +
Sbjct: 9   LRVDGRRWNELRRFYCRINTHPIVADGSAYVEAGNTKIVCLLNGPHEPTRSQMNTQKGSL 68

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +  + P ST  R K      R   R QE+  ++      VV L       I ++  V+
Sbjct: 69  DIKLHVSPFSTTERRKVT----RNDRRIQELSTILKNTFEQVVILKNYPRTIIEVNVRVL 124

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
             DGG   A      +AL D    + D             +++A+S G+     ++DL+ 
Sbjct: 125 AQDGGLLAACCNAITLALVDAGIALYD-------------YISAVSAGVFDNQILLDLNR 171

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            E+  +      V+  +  +  V          QD    +  +A +    L       ++
Sbjct: 172 LEEQDLSSVTIGVVGKTKKLSLV---LSETRLPQDRLAKVFEVAVNGCHQLKDQMDAQVA 228

Query: 240 NE 241
            +
Sbjct: 229 KK 230


>gi|213854161|ref|ZP_03382693.1| ribonuclease PH [Salmonella enterica subsp. enterica serovar
          Typhi str. M223]
          Length = 86

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/86 (59%), Positives = 65/86 (75%)

Query: 7  QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
            NQ+R ++LTR  +K+AEGS LV+FGDT +L TA++EE VP +++    GWITAEYGML
Sbjct: 1  SNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWITAEYGML 60

Query: 67 PRSTGNRVKREAVSGRQGGRSQEIQR 92
          PRST  R  REA  G+QGGR+ EIQR
Sbjct: 61 PRSTHTRNAREAAKGKQGGRTMEIQR 86


>gi|167537032|ref|XP_001750186.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771348|gb|EDQ85016.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1336

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 81/216 (37%), Gaps = 22/216 (10%)

Query: 9   NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWITAEYGMLP 67
           +++R +     V + A+GS  V+ G+T +L                + H  ++ E+    
Sbjct: 38  DELRSVKAKLGVFEQADGSAYVEQGNTKVLAIINGPHDSDARGPNASGHLTVSCEFIYAS 97

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
            ST  R  R  +  +   +   I     R L SVV    L    I ++  V+QADGG   
Sbjct: 98  FSTDQRRARSRLDRKLAEQGTRIA----RTLESVVMGQLLSRSTINLNVQVLQADGGVLA 153

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AI  A +A+ D    M             K  + A + G+L G  ++D ++ E      
Sbjct: 154 TAINAASLAMMDAGVPM-------------KDFLCACNAGVLEGVAVLDTNHSEALARGP 200

Query: 188 DANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
           D    VM  +  IV  Q    +  F        L L
Sbjct: 201 DLTVAVMPRTNTIVLNQDEKRQTNF---ELTMALKL 233


>gi|48477465|ref|YP_023171.1| exosome complex RNA-binding protein Rrp42 [Picrophilus torridus DSM
           9790]
 gi|48430113|gb|AAT42978.1| ribonuclease PH [Picrophilus torridus DSM 9790]
          Length = 260

 Score =  149 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 16/232 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR  N  R+I +       A GS +V+ G T ++    +EE  P +      G +  
Sbjct: 26  RLDGRGLNDFRDIKIFENYIPKASGSAMVELGRTKVVAGVKIEEGEP-FPDTPDQGVMAL 84

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL------GSRQII 113
              MLP +          +G  G  + E  R++ R +R   ++D++ L          + 
Sbjct: 85  NIEMLPMAFPT-----FEAGPPGEEAIEYSRVVDRGIRESKMIDVTRLVIEPGTKVWMVF 139

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID D+I   G    A+   A  AL + +        +      +  +  +++   +    
Sbjct: 140 IDIDIINYAGNIIDASTIAAVAALRNAIVPASRIGGE-DFKLPVNANPVSVTMAKIGDEL 198

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
           ++D D  E+   +      M +  HI  +Q   +   F+ +     +  ++D
Sbjct: 199 VIDPDLEEEQVSNGRITITMAEDDHIHAIQK-GDVGEFTMEDIRKAIKASRD 249


>gi|320101498|ref|YP_004177090.1| ribosomal RNA-processing protein RRP42 [Desulfurococcus mucosus DSM
           2162]
 gi|319753850|gb|ADV65608.1| ribosomal RNA-processing protein RRP42 [Desulfurococcus mucosus DSM
           2162]
          Length = 286

 Score =  149 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 99/256 (38%), Gaps = 23/256 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR     R + +     + A GS LV+ G T ++    LE   P +      G +  
Sbjct: 28  RIDGRGLYDYRPLEVVLNPIQKASGSSLVRLGGTQVIAGVKLELGEP-FPDRPNEGVLQV 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL---GSRQIII-- 114
               +P ++ +        G     S EI R+I R+LR    V L  L     + + +  
Sbjct: 87  HAEFVPLASPS-----FEPGPPDENSIEIARIIDRSLREPKAVKLDTLVVEPGKVVWVVF 141

Query: 115 -DCDVIQADGGTRTAAITGAWVALHDCLQH--------MEDCSNKFQLSQVLKGHVAAIS 165
            D  ++   G    A++  + +AL                  + K      +   V  ++
Sbjct: 142 DDIYLVDHQGNITDASMMASMLALATARIPGLVKTETGYRVDNTKQTGPLPINTLVVTVT 201

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
            G+     +VD    E++ +D      + ++G I  VQ    +  FS++     +N A  
Sbjct: 202 MGIYGDTIVVDPSLEEEAVLDSFLTIAVDEAGRICGVQKRGMKG-FSRNTLENAVNTALS 260

Query: 226 RIADLIKLQKDVISNE 241
           +  DLI+L + +++N 
Sbjct: 261 KGRDLIELLRKILNNP 276


>gi|119719493|ref|YP_919988.1| exosome complex RNA-binding protein Rrp42 [Thermofilum pendens Hrk
           5]
 gi|119524613|gb|ABL77985.1| ribosomal RNA-processing protein RRP42 [Thermofilum pendens Hrk 5]
          Length = 272

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 94/254 (37%), Gaps = 21/254 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR+ +Q REI L + +   A+GS  V  G T ++    L    P +      G    
Sbjct: 25  RLDGRKADQYREIRLEKGIIGKADGSARVFLGSTQVIAGVKLAIGTP-FPDAPNEGVQIV 83

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113
              + P ++          G  G    E+ R++ R  RS  VVDL+ L          + 
Sbjct: 84  NAELSPVASPF-----FEPGPPGEEDIELARVVDRGFRSAKVVDLAKLSIIPSAKCWTLY 138

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL------SQVLKGHVAAISCG 167
           ID   +  DG    AA   A +AL D                       +   V  ++  
Sbjct: 139 IDIYPLDHDGNLVDAAGLAALLALLDTKLPRTSVQENKIAVLDEKDPLPINTLVVYVTVA 198

Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
            +  Y +VD    E+ T D    F +T+ G I  +Q S E  +F  D      ++A    
Sbjct: 199 KIGEYLVVDPTLEEELTADAKITFGITERGEICAIQKSGE-GSFRPDEVLRARDMALKAS 257

Query: 228 ADLIKLQKDVISNE 241
           + L +  K  +  +
Sbjct: 258 STLFEAIKKAVEQK 271


>gi|119872347|ref|YP_930354.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum islandicum
           DSM 4184]
 gi|119673755|gb|ABL88011.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum islandicum DSM
           4184]
          Length = 274

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 101/254 (39%), Gaps = 25/254 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+  ++R I +   V K A+GS  VK G TH++    +    P +      G +  
Sbjct: 29  RIDGREPERIRNIEIKTSVIKTADGSAEVKLGKTHVVAGVKVSLGQP-FPDAPDEGVLVV 87

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSAL-----GSRQIII 114
              +LP ++          G     + E+ R+I R +R    VD   L      +  + +
Sbjct: 88  NAEVLPHASPY-----TEVGPPDEFAIELARVIDRGIRHCGYVDFKKLVVEGGKAYVLWV 142

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAIS 165
           D  VI  DG    AA   A  AL D    +          D +NK  L   +     A+S
Sbjct: 143 DLYVINDDGNLIDAANLAAVAALKDTQLPVVVKDEQGVKLDRNNKTPLPIEVSKAPIAVS 202

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
            G + G   +D  + E+ ++D    F +++   IV VQ +    TF+       L LA  
Sbjct: 203 VGKIGGVLFLDPTFEEELSLDGRITFTISED-RIVAVQKT--IGTFTSQELEMALELAWK 259

Query: 226 RIADLIKLQKDVIS 239
               LI   + V+ 
Sbjct: 260 GKEQLITAARGVLG 273


>gi|91772268|ref|YP_564960.1| exosome complex RNA-binding protein Rrp42 [Methanococcoides
           burtonii DSM 6242]
 gi|91711283|gb|ABE51210.1| Archaeal exosome complex exoribonuclease [Methanococcoides burtonii
           DSM 6242]
          Length = 259

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 91/225 (40%), Gaps = 15/225 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  ++ R++ +   V   AEGS  V  GDT +L    L+   P +  +   G I  
Sbjct: 22  REDGRGFDETRDLIIETNVIDKAEGSAKVLLGDTQVLVGVKLQVGSP-FADSADKGVIIT 80

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113
              + P ++ N       +G    ++ E+ R++ R +R    +DL+ L   +      + 
Sbjct: 81  SMELNPIASPN-----FEAGPPREKAIEMARVVDRGIRESGAIDLNKLCITEGEEVWIVF 135

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID  V+   G    AA  GA  AL       E       +   ++    ++S   + G  
Sbjct: 136 IDVHVLNDSGNLLDAASLGAIAALMTATIPGEREGRGEDVKLPIREMPVSLSFIDIGGEL 195

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
           ++D    E+S  D+    V    G I  +Q S    T S+++F  
Sbjct: 196 VIDATNNEESVSDLRLTIVTNQDGSICAMQKSG-PGTLSEENFLR 239


>gi|52550471|gb|AAU84320.1| 3'-5' exoribonuclease [uncultured archaeon GZfos9D1]
          Length = 257

 Score =  148 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 95/237 (40%), Gaps = 15/237 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   + REIS+ R V K AEGS  VK GDT +L    +E   P +      G I  
Sbjct: 23  REDGRGFREYREISVERDVIKRAEGSARVKIGDTEVLVGVKVELGTP-FPDTPDKGVIIT 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              ++P ++         SG     S ++ R++ R +R    +DL  L    G +   + 
Sbjct: 82  NAELVPLASPK-----FESGPPNENSIQLARVVDRGIRGSETIDLDKLCIEKGEKVWMVF 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID  V+  +G    AA  GA  +L +     E      + +  ++    A++   + G  
Sbjct: 137 IDIHVLDDNGNLADAAALGAIASLLNLRIPNERYGLTGENTLPMRDTPVAVTTVEIEGNI 196

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           +VD  + E +        +    G +  +Q S       +     M+ +  ++  ++
Sbjct: 197 LVDPSFDEGNAAASSVTVISNADGTLSGMQKSGSGG-LKEAQIAEMVEIGIEKAGEI 252


>gi|288560608|ref|YP_003424094.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter
           ruminantium M1]
 gi|288543318|gb|ADC47202.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter
           ruminantium M1]
          Length = 263

 Score =  147 bits (373), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 89/240 (37%), Gaps = 23/240 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  ++ R+I +   V   AEGS  VK GDT ++         P +      G +  
Sbjct: 21  RADGRAFDERRDIFIEPNVIDKAEGSARVKLGDTQVIVGVKPTIGEP-FADTPNLGVLMT 79

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSR------QII 113
              +LP +           G     S E+ R++ R +R   +VDL  L          + 
Sbjct: 80  NCELLPMAAPG-----FEPGPPSPESIELARVVDRGIRESELVDLEKLCIEEGKKVWMLF 134

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGHVAAISC 166
           ID  VI  DG     A      AL +    + +        S    +   ++  +A  + 
Sbjct: 135 IDLHVIDYDGNLFDCANLAVMSALLNTKLPVAEYIDDEVVLSEDETMDLPVRDKLALSTF 194

Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKD 225
             +    I+D    E+  +D      +TD G HI  +Q   E    ++D     ++LA +
Sbjct: 195 VKIGNGLILDPSLEEEEILDARITIGVTDEGNHICSMQKGGEE-PLTRDDILDAVHLAFE 253


>gi|238881631|gb|EEQ45269.1| exosome complex exonuclease RRP41 [Candida albicans WO-1]
          Length = 240

 Score =  147 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 93/243 (38%), Gaps = 22/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGW 58
           +R+ GR+ N++R           + +GS  V+ G+T ++ T     E      ++++   
Sbjct: 9   LRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPALRSQQHSERAN 68

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           I     +   ST  R KR     R   R  E++  + +     V ++      I+I+  V
Sbjct: 69  IEVNLNIASFSTFERKKR----SRNERRLVELKTTLEKTFEESVMINLYPRTNIVINVQV 124

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +  DGG   A I    +AL D    M D             +V+ +SCG+    P++D++
Sbjct: 125 LCQDGGMLAAVINSITLALIDAGISMYD-------------YVSGVSCGVYDQTPLLDVN 171

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             E+  +      V+  S  +  +           D   ++L++       + +L    +
Sbjct: 172 NLEEHDMSCLTVGVIGKSEKLALMLL---EDKMPLDRLESVLSIGIAGSHKIRELMDQEV 228

Query: 239 SNE 241
              
Sbjct: 229 RKH 231


>gi|68466049|ref|XP_722799.1| likely exosome component Ski6p [Candida albicans SC5314]
 gi|68466344|ref|XP_722654.1| likely exosome component Ski6p [Candida albicans SC5314]
 gi|46444644|gb|EAL03917.1| likely exosome component Ski6p [Candida albicans SC5314]
 gi|46444799|gb|EAL04071.1| likely exosome component Ski6p [Candida albicans SC5314]
          Length = 240

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 93/243 (38%), Gaps = 22/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGW 58
           +R+ GR+ N++R           + +GS  V+ G+T ++ T     E      ++++   
Sbjct: 9   LRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPALRSQQHSERAN 68

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           I     +   ST  R KR     R   R  E++  + +     V ++      I+I+  V
Sbjct: 69  IEVNLNIASFSTFERKKR----SRNERRLVELKTTLEKTFEESVMINLYPRTNIVINVQV 124

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +  DGG   A I    +AL D    M D             +V+ +SCG+    P++D++
Sbjct: 125 LCQDGGMLAAVINSITLALIDAGISMYD-------------YVSGVSCGLYDQTPLLDVN 171

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             E+  +      V+  S  +  +           D   ++L++       + +L    +
Sbjct: 172 NLEEHDMSCLTVGVIGKSEKLALMLL---EDKMPLDRLESVLSIGIAGSHKIRELMDQEV 228

Query: 239 SNE 241
              
Sbjct: 229 RKH 231


>gi|126465759|ref|YP_001040868.1| exosome complex RNA-binding protein Rrp42 [Staphylothermus marinus
           F1]
 gi|126014582|gb|ABN69960.1| ribosomal RNA-processing protein RRP42 [Staphylothermus marinus F1]
          Length = 285

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 101/257 (39%), Gaps = 24/257 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ ++ R I +       AEGS  VK G+T ++T   LE   P   R    G +  
Sbjct: 28  RIDGRKLDEYRPIEVFLNPIPKAEGSAAVKLGNTFVITGVKLEIGTPYSDR-PNEGVLQV 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL---GSRQIII-- 114
               +P ++          G     + E  R+I R+LR    + L  L     +++ +  
Sbjct: 87  HAEFVPLASPT-----FEPGPPDENAIETARVIDRSLREPRAIRLEDLVVIPGKKVWLIF 141

Query: 115 -DCDVIQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
            D  +I   G      +    +AL+              +       +    L  +V  +
Sbjct: 142 NDLYLIDHYGNIVDTGMLSTMLALNMTKIPRIVSIEDENVVIDKTVKEAPLPLNLNVVTV 201

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           + G++    IVD +  E+  +D    F + ++  IV +Q    +          ++++A 
Sbjct: 202 TLGIIDDVIIVDPNIEEELVVDSRITFAVDETNRIVGIQKMGMKG-IKPKMIDQLVDIAL 260

Query: 225 DRIADLIKLQKDVISNE 241
            + ++L  L ++V++N 
Sbjct: 261 KKASELHSLLREVLNNP 277


>gi|254168333|ref|ZP_04875178.1| 3' exoribonuclease family, domain 1 protein [Aciduliprofundum
           boonei T469]
 gi|197622614|gb|EDY35184.1| 3' exoribonuclease family, domain 1 protein [Aciduliprofundum
           boonei T469]
          Length = 226

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 14/203 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +++R +++T+     AEGS LV  G+T +L    +E   P +      G +T 
Sbjct: 28  RVDGRHFDEIRNLTVTKGYIPRAEGSALVNLGNTRVLVGVKIEPGTP-FPDTPNMGILTT 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQ--II 113
              + P ++          G  G  + E+ R++ R +R    +DL  L    G +   + 
Sbjct: 87  NAELAPLASPT-----FEPGPPGEEAIELARVVDRGIREGHAIDLEKLVIEEGEKVWIVF 141

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID  V+  DG    AA  GA  AL +                 ++ +   ++   +  + 
Sbjct: 142 IDIHVLDYDGNLFDAAGYGALAALTNATVPASRYDLGEDFKLPVQHYPVPVTFAKIGDWI 201

Query: 174 IVDLDYGEDSTIDVDANFVMTDS 196
           + D +  E+S           + 
Sbjct: 202 VADPNLDEESIASARLTVATNEE 224


>gi|149236726|ref|XP_001524240.1| exosome complex exonuclease RRP41 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451775|gb|EDK46031.1| exosome complex exonuclease RRP41 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 244

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 88/236 (37%), Gaps = 22/236 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGW 58
           +R+ GR+ N++R           + +GS  V+ G+T ++ T     E       N     
Sbjct: 12  LRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVICTVIGPMEPTSRAQMNQDRAN 71

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +     +   ST  R KR     +   R  E++  + R    ++ L       I I+  V
Sbjct: 72  VEVNLTIANFSTFERKKR----SKTEKRLVELRTTLERTFEQLILLHLYPRTNITINVQV 127

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +  DGG   A      +AL D    M D             +V++ISCG+    P++DL+
Sbjct: 128 LNQDGGMLAAVTNSITLALMDAGIAMYD-------------YVSSISCGLHDQSPLLDLN 174

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
             E++ +      V+  S  +  +           D+   +L +A      +  L 
Sbjct: 175 NLEENDMSCLTIGVIGKSEKLALLML---EDKMPLDNLEKVLGIAIAGSHRIKDLM 227


>gi|332157778|ref|YP_004423057.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. NA2]
 gi|331033241|gb|AEC51053.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. NA2]
          Length = 274

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 99/255 (38%), Gaps = 23/255 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+  R     R IS+   + + AEGS LVK G+T +L         P +      G +T 
Sbjct: 24  RIDDRGFEDYRPISIEVGIIEKAEGSALVKIGNTQVLVGIKTTLGEP-FPDTPNMGVMTT 82

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113
              ++P ++          G    R+ E+ R+I R +R    ++L  +        R + 
Sbjct: 83  NVELVPLASPT-----FEPGPPDERAIELARVIDRGIRESRALNLEKMVIVPGKIVRVVF 137

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNK----FQLSQVLKGHVAAIS 165
           ID  V+  DG    A    A  AL +     +++ E+         +    ++     ++
Sbjct: 138 IDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVEVLEEKEPLPVEKIPVPVT 197

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
              +    +VD    E+  ++        ++GHI  VQ S E   F  +     +++A  
Sbjct: 198 FAKIGNILVVDPSLDEELVMEGRLTITTDETGHISAVQKS-EGGAFKLEEVMYAVDVAFK 256

Query: 226 RIADLIKLQKDVISN 240
           +  ++ K+  + +  
Sbjct: 257 KAEEIRKMIIEAVKG 271


>gi|170292235|pdb|2PNZ|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With Udp And Gmp
 gi|170292237|pdb|2PO0|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With Adp In Double Conformation
 gi|170292240|pdb|2PO1|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With A Single Stranded 10-Mer Poly(A) Rna
 gi|170292242|pdb|2PO2|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
           Complexed With Cdp
          Length = 277

 Score =  145 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 95/255 (37%), Gaps = 23/255 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+  R     R I +   V + AEGS LVK G T +L         P +      G +T 
Sbjct: 27  RIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEP-FPDTPNMGVMTT 85

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113
              ++P ++          G    R+ E+ R+I R +R    ++L  +        R + 
Sbjct: 86  NVELVPLASPT-----FEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVF 140

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQL----SQVLKGHVAAIS 165
           ID  V+  DG    A    A  AL +     +++ E+      L       ++     ++
Sbjct: 141 IDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVETLDETEPLPVEKIPVPVT 200

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
              +    +VD    E+  +D        ++GHI  VQ S E   F  +     +  A  
Sbjct: 201 FAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKS-EGGAFKLEEVMYAVETAFK 259

Query: 226 RIADLIKLQKDVISN 240
           +  ++ KL  + +  
Sbjct: 260 KAEEIRKLILEAVEK 274


>gi|14520827|ref|NP_126302.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus abyssi GE5]
 gi|29337009|sp|Q9V118|ECX2_PYRAB RecName: Full=Probable exosome complex exonuclease 2
 gi|5458043|emb|CAB49533.1| RNAse PH-related exoribonuclease [Pyrococcus abyssi GE5]
          Length = 274

 Score =  144 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 95/255 (37%), Gaps = 23/255 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+  R     R I +   V + AEGS LVK G T +L         P +      G +T 
Sbjct: 24  RIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEP-FPDTPNMGVMTT 82

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113
              ++P ++          G    R+ E+ R+I R +R    ++L  +        R + 
Sbjct: 83  NVELVPLASPT-----FEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVF 137

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQL----SQVLKGHVAAIS 165
           ID  V+  DG    A    A  AL +     +++ E+      L       ++     ++
Sbjct: 138 IDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVETLDETEPLPVEKIPVPVT 197

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
              +    +VD    E+  +D        ++GHI  VQ S E   F  +     +  A  
Sbjct: 198 FAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKS-EGGAFKLEEVMYAVETAFK 256

Query: 226 RIADLIKLQKDVISN 240
           +  ++ KL  + +  
Sbjct: 257 KAEEIRKLILEAVEK 271


>gi|224106782|ref|XP_002314284.1| predicted protein [Populus trichocarpa]
 gi|222850692|gb|EEE88239.1| predicted protein [Populus trichocarpa]
          Length = 257

 Score =  144 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 82/241 (34%), Gaps = 25/241 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q R           A GS   +FG+T ++ +     +    +  +  G + 
Sbjct: 34  LRPDGRGFHQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLN 93

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
                   +T  R          G  ++E   M+ +AL   + L       + +   V++
Sbjct: 94  CNVSCTTFATPARG--------LGSDNKEFSSMLHKALEGAIMLETFPKTTVDVFALVLE 145

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           + G      I+ A +AL D    M D              VA +S   L    I+D    
Sbjct: 146 SGGSDLPVVISCASLALADAGIMMYDL-------------VAGVSVSCLGRNLIIDPILE 192

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           E+S  D       M     + ++  + E   +S       + L  D  + L K+ +  + 
Sbjct: 193 EESFQDGSLMITCMPSRYEVTQLSITGE---WSTAKLNEAMQLCLDACSKLDKIMRACLK 249

Query: 240 N 240
            
Sbjct: 250 E 250


>gi|118489169|gb|ABK96391.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 257

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 83/241 (34%), Gaps = 25/241 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q R           A GS   +FG+T ++ +     +    +  +  G + 
Sbjct: 34  LRPDGRGFHQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLN 93

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
                   +T  R          G  ++E   M+ +AL   + L       + +   V++
Sbjct: 94  CNVSCTTFATPARG--------LGSDNKEFSSMLHKALEGAIMLETFPKTTVDVFALVLE 145

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           + G      I+ A +AL D    M D              VA +S   L    I+D    
Sbjct: 146 SGGSDLPVVISCASLALADAGIMMYDL-------------VAGVSVSCLGRNLIIDPILE 192

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           E+S  D       M     + ++  + E   +S       ++L  D  + L K+ +  + 
Sbjct: 193 EESFQDGSLMITCMPSRYEVTQLSITGE---WSTAKLNEAMHLCLDACSKLDKIMRACLK 249

Query: 240 N 240
            
Sbjct: 250 E 250


>gi|241954284|ref|XP_002419863.1| 3'-to-5' phosphorolytic exoribonuclease, putative; exosome complex
           exonuclease, putative; ribosomal RNA processing protein,
           putative [Candida dubliniensis CD36]
 gi|223643204|emb|CAX42078.1| 3'-to-5' phosphorolytic exoribonuclease, putative [Candida
           dubliniensis CD36]
          Length = 240

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 92/243 (37%), Gaps = 22/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGW 58
           +R+ GR+ N++R           + +GS  V+ G+T ++ T     E      ++++   
Sbjct: 9   LRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPTLRSQQHSERAN 68

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           I     +   ST  R KR     R   R  E++  + +     V ++      I+I+  V
Sbjct: 69  IEVNLNIASFSTFERKKR----SRNERRLVELKTTLEKTFEESVMINLYPRTNIVINVQV 124

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +  DGG     I    +AL D    M D             +V+ +SCG+    P++D++
Sbjct: 125 LCQDGGMLATIINSITLALIDAGISMYD-------------YVSGVSCGLYDQTPLLDVN 171

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             E+  +      V+  S  +  +           D   ++L++       + +L    +
Sbjct: 172 NLEEHDMSCLTIGVIGKSEKLALLLL---EDKMPLDRLESVLSIGIAGSHKIRELMDQEV 228

Query: 239 SNE 241
              
Sbjct: 229 RKH 231


>gi|209882995|ref|XP_002142931.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
 gi|209558537|gb|EEA08582.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
           RN66]
          Length = 250

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 101/245 (41%), Gaps = 25/245 (10%)

Query: 1   MRLSGRQENQMREI--SLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
            R+ GR+ N++R I   ++   S  ++ S   + G T L+T+      +P+   +++ G 
Sbjct: 16  FRIDGRRFNEIRRISCKISNGTSNLSDSSVYYEQGQTKLITSICGP--IPLLNSSSQSGI 73

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +   + M P  T +R KR    G+      E   +I R   S +        QIII+ +
Sbjct: 74  QLHCNFRMSPFCTPDRRKR----GKNDRFCTENSLIITRTFESAIS-EIYVKSQIIININ 128

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V++ADGG R+AAI    +AL +    M+D              V + + G+    P+ D+
Sbjct: 129 VLEADGGVRSAAINATSLALANAGIGMKDL-------------VISSTIGLYGRIPLYDI 175

Query: 178 DYGEDSTIDVDANFVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              E   +    +F +  +   I  +          +D    +L  +      + K+ ++
Sbjct: 176 VQAEFDVLKTIMSFAIYSTDENIAPITMEL-NTKVDEDILNLLLEHSAAACKHISKILRN 234

Query: 237 VISNE 241
           ++   
Sbjct: 235 ILRQH 239


>gi|118487722|gb|ABK95685.1| unknown [Populus trichocarpa]
          Length = 257

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 81/241 (33%), Gaps = 25/241 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR   Q R           A GS   +FG+T ++ +     +    +  +  G + 
Sbjct: 34  LRPDGRDFQQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLN 93

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
                   +T  R          G  ++E   M+ +AL   + L       + +   V++
Sbjct: 94  CNVSCTTFATPARG--------LGSDNKEFSSMLHKALEGAIMLETFPKTTVDVFALVLE 145

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           + G      I+ A +AL D    M D              VA +S   L    I+D    
Sbjct: 146 SGGSDLPVVISCASLALADAGIMMYDL-------------VAGVSVSCLGRNLIIDPILE 192

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           E+S  D       M     + ++  + E   +S       + L  D  + L K+ +  + 
Sbjct: 193 EESFQDGSLMITCMPSRYEVTQLSITGE---WSTAKLNEAMQLCLDACSKLDKIMRACLK 249

Query: 240 N 240
            
Sbjct: 250 E 250


>gi|218884634|ref|YP_002429016.1| exosome complex RNA-binding protein Rrp42 [Desulfurococcus
           kamchatkensis 1221n]
 gi|218766250|gb|ACL11649.1| Probable exosome complex exonuclease 2 [Desulfurococcus
           kamchatkensis 1221n]
          Length = 286

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 96/256 (37%), Gaps = 23/256 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR     R I +       A GS LVK G T ++    LE + P +      G +  
Sbjct: 28  RIDGRGLTDYRPIEVILNPITKASGSSLVKLGGTQVIAGVKLELEEP-FPDRPGEGVLQV 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL---GSRQII--- 113
               +P ++ +        G     + E+ R+I R+LR    V L AL     + +    
Sbjct: 87  HAEFVPLASPS-----FEPGPPDENAIEVARVIDRSLRESKAVKLDALAIEPGKIVWSVY 141

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN--------KFQLSQVLKGHVAAIS 165
            D  ++   G      +  + +AL                    K+     +   VA ++
Sbjct: 142 TDIYLVDHQGNIIDTGMLASMLALATSRIPELIKGENGYKVDHTKYVGPLPINTLVATVT 201

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
            G+     IVD    E++ ID      + +SG I  +Q    +  FS+      + +A  
Sbjct: 202 MGIYNDVIIVDPLLEEEAVIDSFITIAIDESGRICGIQKRGMKG-FSRSVLDNTIEIALS 260

Query: 226 RIADLIKLQKDVISNE 241
           +  +L+ L K +++N 
Sbjct: 261 KGRELVDLMKKILNNP 276


>gi|315427142|dbj|BAJ48757.1| exosome complex component RRP42 [Candidatus Caldiarchaeum
           subterraneum]
 gi|315427161|dbj|BAJ48775.1| exosome complex component RRP42 [Candidatus Caldiarchaeum
           subterraneum]
          Length = 271

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 90/240 (37%), Gaps = 22/240 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+  R+  Q R+I +   V + A GS LV  G T +LT   +E   P +      G  T 
Sbjct: 24  RIDEREPLQYRKIEIATNVVEKAHGSALVSLGKTKILTGIKVEVGTP-YPDRPNEGVFTV 82

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113
              +LP ++          G    R+ E+ R++ R +R    +++  L          I 
Sbjct: 83  NAELLPLASKT-----FEPGPPDERAIELSRIVDRVIRESKAIEVEKLCIVEGQKVYMIF 137

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHM-------EDCSNKFQLSQVLKGHVAAISC 166
           IDC V+  DG    A++  A  AL      +        +     ++   ++    +++ 
Sbjct: 138 IDCYVLDYDGNYFDASVLSAVAALRTMTLPVYRVVDGRVEAVPGEKMKLPMRTLPVSVTM 197

Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            ++    IVD    E+   D          G +  +Q S+       + F  M+ +  D 
Sbjct: 198 ALIRDKIIVDPLPAEEDVADTVVTIGYDSDGVLSAIQKSS-PGLLPVNMFKEMVKIGLDA 256


>gi|11498105|ref|NP_069330.1| exosome complex RNA-binding protein Rrp42 [Archaeoglobus fulgidus
           DSM 4304]
 gi|29336575|sp|O29756|ECX2_ARCFU RecName: Full=Probable exosome complex exonuclease 2
 gi|83754328|pdb|2BA0|I Chain I, Archaeal Exosome Core
 gi|83754329|pdb|2BA0|H Chain H, Archaeal Exosome Core
 gi|83754330|pdb|2BA0|G Chain G, Archaeal Exosome Core
 gi|83754337|pdb|2BA1|G Chain G, Archaeal Exosome Core
 gi|83754338|pdb|2BA1|H Chain H, Archaeal Exosome Core
 gi|83754339|pdb|2BA1|I Chain I, Archaeal Exosome Core
 gi|295322010|pdb|3M7N|G Chain G, Archaeoglobus Fulgidus Exosome With Rna Bound To The
           Active Site
 gi|295322011|pdb|3M7N|H Chain H, Archaeoglobus Fulgidus Exosome With Rna Bound To The
           Active Site
 gi|295322012|pdb|3M7N|I Chain I, Archaeoglobus Fulgidus Exosome With Rna Bound To The
           Active Site
 gi|2650132|gb|AAB90743.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 259

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 15/243 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  ++ R++ +   V + AEGS LVK GDT ++    ++   P +      G I  
Sbjct: 23  RIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEP-YPDTPDRGVIIV 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQ--II 113
              ++P ++          G     S E+ R++ R +R    VDLS L    G +   + 
Sbjct: 82  NAELVPLASPT-----FEPGPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVF 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +D   +  DG    A+   A  AL +     E           ++    +++  ++    
Sbjct: 137 VDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLGEDYLLPVRDLPVSVTSLIVGNKY 196

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +VD    E S  D           ++V +Q S       +  F  +L+++ +    L + 
Sbjct: 197 LVDPSREEMSVGDTTLTITTDKDDNVVAMQKSG-GYLLDEKLFDELLDVSINCARKLREK 255

Query: 234 QKD 236
            K+
Sbjct: 256 FKE 258


>gi|305663899|ref|YP_003860187.1| 3' exoribonuclease [Ignisphaera aggregans DSM 17230]
 gi|304378468|gb|ADM28307.1| 3' exoribonuclease [Ignisphaera aggregans DSM 17230]
          Length = 286

 Score =  142 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 94/252 (37%), Gaps = 26/252 (10%)

Query: 3   LSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE 62
           +  R     R   +   ++  A+ S L K G+T +L    LE   P +  +   G +   
Sbjct: 28  VDRRPLTSYRSFEVKFNIAPNADSSVLFKLGNTQILAGVKLEVGQP-FPDSPNEGILIVN 86

Query: 63  YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQ--III 114
              LP ++          G     + E+ R+I R LR   V+ L  L    G R   + +
Sbjct: 87  AEYLPAASPT-----FEPGPPDENAIELARVIDRGLREAKVIALDKLVIVPGKRVWIVWL 141

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDC----------SNKFQLSQVLKGHVAAI 164
           D  ++  DG    A+   + +AL        +             +      L  +V ++
Sbjct: 142 DIYILDHDGNLIDASAMASMLALATTFIPYYEVDPLTSNVKIDRTRKLQRLPLNRYVVSV 201

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           +   +    ++D    E++         +++ G+IV +Q        ++D     +++A 
Sbjct: 202 TVNKIGDLLVIDPTGEEEAIASSKLAISISEEGNIVGIQKMG-IGYVTEDDINKAIDIAL 260

Query: 225 D-RIADLIKLQK 235
              I ++ KL+K
Sbjct: 261 SIGIDNIEKLKK 272


>gi|255082324|ref|XP_002504148.1| predicted protein [Micromonas sp. RCC299]
 gi|226519416|gb|ACO65406.1| predicted protein [Micromonas sp. RCC299]
          Length = 261

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 94/238 (39%), Gaps = 22/238 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           +RL GR+  + R +         ++GS + + G+T +L       +      R      +
Sbjct: 9   LRLDGRRPKETRRMRCELTALPGSDGSAVFELGNTKVLAAVHGPHECRRPSERLEDRLLV 68

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             E  M   STG R +R     R    + E+   + R + + V    L   Q+ +   V+
Sbjct: 69  KCEVSMAAFSTGERRRRTKGDRR----TNELSTFVRRCIETCVSAELLARSQLDVSIQVL 124

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           QADGG R AA+  A +A+ D    M+D              +A  S G L   P++DL+Y
Sbjct: 125 QADGGVRAAAVNAAVLAIVDAGIPMQDT-------------MACCSAGYLDDTPLLDLNY 171

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            E+     + +   M     +V +    +    S D F     LA D      KL ++
Sbjct: 172 MEEGGGGPEVHVAYMPQMDRVVAIVTENKA---SVDVFERAHELALDGCRVASKLMRE 226


>gi|291000756|ref|XP_002682945.1| 3'-5' exoribonuclease/RNA-binding protein-like protein [Naegleria
           gruberi]
 gi|284096573|gb|EFC50201.1| 3'-5' exoribonuclease/RNA-binding protein-like protein [Naegleria
           gruberi]
          Length = 300

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 89/245 (36%), Gaps = 22/245 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTKHGWIT 60
           R   R  ++ R + +   V K A GS  +++ + T ++ +     ++      +  G I 
Sbjct: 65  RQDNRTCDKFRNVFMQVGVIKQARGSAYMEYQNGTKVICSVYGPRQISARNEFSDIGAIQ 124

Query: 61  AEYGMLPRSTGNRVKREA----VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            EY +   +  +   +       S        E    +  AL   + L       I + C
Sbjct: 125 CEYRVANFAYQSSNNQSTFLNNSSNNNRRHHVENSIHLREALEVSIRLDKYPKSVIDVYC 184

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
            ++Q DG   +AAI+ A +AL +    M D              V+A +   L G+ IVD
Sbjct: 185 FILQDDGSALSAAISCASLALANAGIEMYD-------------MVSACTTSELEGHIIVD 231

Query: 177 LDYGEDSTI-DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
               E            M++   + ++   ++    S       ++L  D  + L +L +
Sbjct: 232 PTNLEYKYASGGMVCAYMSNLNQVTQL---SQVGDMSYQKIGEAMDLCIDGCSKLNQLMQ 288

Query: 236 DVISN 240
             + N
Sbjct: 289 QCLLN 293


>gi|295322022|pdb|3M85|G Chain G, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
           Active Site
 gi|295322023|pdb|3M85|H Chain H, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
           Active Site
 gi|295322024|pdb|3M85|I Chain I, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
           Active Site
          Length = 259

 Score =  141 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 95/243 (39%), Gaps = 15/243 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  ++ R++ +   V + AEGS LVK GDT ++    ++   P        G I  
Sbjct: 23  RIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEPA-PDTPDRGVIIV 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQ--II 113
              ++P ++          G     S E+ R++ R +R    VDLS L    G +   + 
Sbjct: 82  NAELVPLASPT-----FEPGPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVF 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +D   +  DG    A+   A  AL +     E           ++    +++  ++    
Sbjct: 137 VDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLGEDYLLPVRDLPVSVTSLIVGNKY 196

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +VD    E S  D           ++V +Q S       +  F  +L+++ +    L + 
Sbjct: 197 LVDPSREEMSVGDTTLTITTDKDDNVVAMQKSG-GYLLDEKLFDELLDVSINCARKLREK 255

Query: 234 QKD 236
            K+
Sbjct: 256 FKE 258


>gi|170290982|ref|YP_001737798.1| exosome complex RNA-binding protein Rrp42 [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170175062|gb|ACB08115.1| 3' exoribonuclease [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 268

 Score =  141 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 95/252 (37%), Gaps = 23/252 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  ++ R I +       AEG   +K G+T +L     +   P +      G   +
Sbjct: 25  RVDGRGLHEYRPIEVLNGTFTKAEGEAWLKLGETQVLVGVKADLGEP-FPDTPDKGVFVS 83

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113
              +LP ++          G     + E+ R++ RA+RS   +DL +L          I 
Sbjct: 84  NAELLPVASPT-----FEPGPPDEGAIELARVVDRAIRSADAIDLGSLVILPGKLVYMIF 138

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-------VLKGHVAAISC 166
           +D  V+  DG    +    + +AL        +     ++          LK      S 
Sbjct: 139 LDMYVLDYDGNLEDSLTLASLIALGRSEIPEVELKENGEIEVKESKRKLELKDIPINFSF 198

Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             +    ++D    E+S  D      +   G +  VQ      TF+ +    ++N+A+ +
Sbjct: 199 VKIGSKILLDPTLEEESVSDASITVAINKDGKVCSVQK--RHGTFTVEEILNIVNVARSK 256

Query: 227 IADLIKLQKDVI 238
             +L ++ ++ I
Sbjct: 257 WPELARIVREAI 268


>gi|124027457|ref|YP_001012777.1| exosome complex RNA-binding protein Rrp42 [Hyperthermus butylicus
           DSM 5456]
 gi|123978151|gb|ABM80432.1| RNase PH-related exoribonuclease [Hyperthermus butylicus DSM 5456]
          Length = 328

 Score =  141 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 90/252 (35%), Gaps = 23/252 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ ++ R + +T      AEGS LVK G T +L      + V  +        + 
Sbjct: 27  VRLDGRKLDETRPVEITPGYIDRAEGSALVKLGQTVVLAGVK-TDIVAPFPDTPNEAVLV 85

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL---GSRQII-- 113
                +P ++          G     + E+ R+I R+LR    V L  L     + +   
Sbjct: 86  VHAEFVPLASPT-----FEPGPPDENAIELARVIDRSLREIKAVALDKLVLEPGKHVWRL 140

Query: 114 -IDCDVIQADGGTRT--------AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
            +D  ++  DG            A +T    A            +KF     +   V  +
Sbjct: 141 YVDLYILNHDGNLFDASMLAAMAALMTTRLPAAVKTEDGYTVDRSKFTGLVPVNHKVVTV 200

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           +   L    IVD  Y E+   D      ++D G I  +Q +      +       + +A 
Sbjct: 201 TIAKLSNRLIVDPTYEEEQVADTRLVVAVSDDGRIAGIQKTGMGD-LTYKEVLTAVAIAL 259

Query: 225 DRIADLIKLQKD 236
           ++    +K  ++
Sbjct: 260 NKAQVYLKALEE 271


>gi|150951278|ref|XP_001387575.2| predicted protein [Scheffersomyces stipitis CBS 6054]
 gi|149388461|gb|EAZ63552.2| predicted protein [Pichia stipitis CBS 6054]
          Length = 241

 Score =  141 bits (357), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 87/236 (36%), Gaps = 22/236 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGW 58
           +R+ GR+ N++R           + +GS  ++ G+T ++       E       N+    
Sbjct: 9   LRIDGRRWNEIRNFECRINTHPNSSDGSSYIEQGNTKVICVVQGPMEPALRSQANSNEAT 68

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +     +   ST  R KR     +   R  +++  + R  +  V  +      I ID  V
Sbjct: 69  LEVNLSVANFSTTERKKR----SKSEKRMVQLKTTLERTFQQSVMCNLYPRTLIRIDLHV 124

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +  DGG   A      +AL D    M D             +VAA++ G+    P++D++
Sbjct: 125 LSQDGGMLAACTNAMTLALIDAGVSMYD-------------YVAAMTAGLHDQTPLLDMN 171

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
             E++ +      V+  S  +  +           D   ++L +A      +  L 
Sbjct: 172 GLEENDMSTLTIGVIGKSEKLSLLML---EDKIPLDRLESVLAIAIAGSHKIRDLM 224


>gi|327291858|ref|XP_003230637.1| PREDICTED: exosome complex exonuclease RRP41-like, partial [Anolis
           carolinensis]
          Length = 188

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 73/195 (37%), Gaps = 21/195 (10%)

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
                     +  ++ +   STG R +R         ++ E+   + +   + +      
Sbjct: 5   RSKALHDQAVVNCQFSLATFSTGERKRRPHG----DRQTSEMSLHLKQTFEAAILTQLYP 60

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
             QI I   ++QADGG   A++  A +A+ D                 L+ +V A S G 
Sbjct: 61  RSQIDIYVQILQADGGNYCASVNAATLAVIDAGI-------------PLRDYVCASSAGF 107

Query: 169 LCGYPIVDLDYGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
           +   P+ DL+Y E+++         +  S  I  ++ +A      +DH   ++  A    
Sbjct: 108 IEDTPLADLNYVEEASGGPQLALALLPKSEQIALLEMNAR---LHEDHLERIMEAASKAC 164

Query: 228 ADLIKLQKDVISNEV 242
            D+  +   V+   +
Sbjct: 165 KDVYLVLDQVVREHL 179


>gi|221113409|ref|XP_002164788.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 258

 Score =  141 bits (356), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 79/240 (32%), Gaps = 19/240 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR EN++R + L       A GS  V+  DT L+         P   + +  G I  
Sbjct: 35  RQDGRGENEIRPMYLKAGTIHQANGSSYVETCDTKLICAVYGPRDNPKRHQFSSKGNIFC 94

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           E    P S   RV        Q   S+E    I +A  S V L +    QI I  ++++ 
Sbjct: 95  EVTFAPFSWHERVSN------QDSLSKEYSSAIVQAFESAVCLESYPKAQIDIYINILEY 148

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
            G   + A   A +AL D    M D     +         +A S         VD    E
Sbjct: 149 SGNCLSYAFIAASIALADAGIEMLDLVTSCE---------SAFSNETSIQRVCVDPSGEE 199

Query: 182 DSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            S          M     I  +    E    + D     +    +    + K  K+ I N
Sbjct: 200 VSLCKGRVVIAYMPSLNKISYLSMQGEE---TIDDSMQNVITCIEGCLRIYKYMKECIMN 256


>gi|219127863|ref|XP_002184146.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404377|gb|EEC44324.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 274

 Score =  140 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 88/257 (34%), Gaps = 33/257 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHG 57
           +R  GR+ +++R + +       +   GS LV+ G T +L T     + +     N    
Sbjct: 16  LRNDGRKPHEIRRMRVQMSPLSVSTISGSALVEMGLTVVLATVRGPVDCLRRADENPDQA 75

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +       P S+     R   + +   R  E   M+ RA+ + + L      +I +   
Sbjct: 76  VLDVTVQSAPFSSS--ADRRVANPKTDRRLIEASHMLKRAMEAAILLHLYPKSRIELVVS 133

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
           V+  DGG   AAI  A +AL D    M             K  V A S G+         
Sbjct: 134 VLADDGGRLCAAINAATLALMDAGIPM-------------KDFVCACSAGLPGTSATPDS 180

Query: 174 ----IVDLDYGED-----STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
               +VDL+  E+              ++     +V  Q  A       D    +L+ A 
Sbjct: 181 HALTLVDLNRQEESSTGGQAATHMPVALLPQRNTLVLAQCEARLPNL--DTLERVLDAAT 238

Query: 225 DRIADLIKLQKDVISNE 241
           +    +  + +  +   
Sbjct: 239 EGCRAVFDILQAAVREH 255


>gi|159040755|ref|YP_001540007.1| exosome complex RNA-binding protein Rrp42 [Caldivirga
           maquilingensis IC-167]
 gi|157919590|gb|ABW01017.1| 3' exoribonuclease [Caldivirga maquilingensis IC-167]
          Length = 279

 Score =  140 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 87/237 (36%), Gaps = 26/237 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   RQ   MR++++   V K A+GS LV  G+T ++     E   P +      G +  
Sbjct: 26  RPDDRQLISMRDLTIRVGVIKTADGSALVNLGNTKVIAGIKFELGKP-FEDTPNEGNLIV 84

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR-----SVVDLSALGSRQI---I 113
                P +           G     + EI R+I RALR      + DL  +  + +    
Sbjct: 85  NLETPPLAAPT-----FEPGPPDENAIEIARIIDRALRHSNYIPLRDLVIIPGKSVYSMW 139

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAI 164
           +D  V+  DG    +++  A  A+ +               D S K  L+   +     +
Sbjct: 140 VDIYVLNHDGNLIDSSMLAAVSAIANAQVPRAIIDGENVKLDKSTKIPLNINPQNMPLTV 199

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +   +  Y IVD    E+   D           +IV +Q       F+ +   +M+N
Sbjct: 200 TYYKIDKYLIVDPTLEEEVMSDGRFTVASDGE-NIVALQKG--EGYFTPEEVDSMMN 253


>gi|126459545|ref|YP_001055823.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum calidifontis
           JCM 11548]
 gi|126249266|gb|ABO08357.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum calidifontis
           JCM 11548]
          Length = 274

 Score =  140 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 101/254 (39%), Gaps = 26/254 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +Q+R + +   V K A+GS  VK G TH++    +    P +      G +  
Sbjct: 29  RIDGREVDQVRPVEVKTGVVKTADGSAEVKLGKTHVVAGVKIGLGQP-FPDAPDEGVLVV 87

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSAL-----GSRQIII 114
              +LP ++          G     + E+ R++ R LR    VD   L      +  + +
Sbjct: 88  NAEVLPHASPY-----TEVGPPDEFAIELARVVDRGLRHCGYVDFKKLSVEGGKAYVLWV 142

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHME----------DCSNKFQLSQVLKGHVAAI 164
           D  VI  DG    AA   A  AL +                D +++  +   L+    A+
Sbjct: 143 DLYVINDDGNLVDAANLAAVAALKNAALPAVVKDETGAVKLDRNSRTPMPLDLEKAPIAV 202

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           S G +     +D  + E+ ++D    +       IV +Q +    +F+Q    A L+LA 
Sbjct: 203 SVGKIANVLFLDPIFEEELSLDGRITYTFAQE-RIVAIQKTL--GSFTQQELEAALDLAW 259

Query: 225 DRIADLIKLQKDVI 238
                 +   K+V+
Sbjct: 260 RGRESYLASLKEVL 273


>gi|125546411|gb|EAY92550.1| hypothetical protein OsI_14290 [Oryza sativa Indica Group]
          Length = 260

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 82/240 (34%), Gaps = 25/240 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +  R   +    +  A GS   +FG T ++ +     +    +  +  G +  
Sbjct: 39  RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 98

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
                  +T  R         QG  ++E   M+ +AL   V L       + +   V+++
Sbjct: 99  NVSYTTFATPMRG--------QGTDNKEYSAMLHKALEGAVMLHTFPKTTVDVFALVLES 150

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
            G      I+ A +AL D    M D              V ++S        I+D    E
Sbjct: 151 GGSDLPIIISCASLALADAGIMMYDL-------------VTSVSVSCFGKNIIIDPTSDE 197

Query: 182 DSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ++  D       M     I ++  + E   +S       + L  D  + L  + ++ + +
Sbjct: 198 EAWQDGSLMVAYMPARKEITQLTLTGE---WSDGKITNAVELCMDACSKLCDILREHLKD 254


>gi|41469640|gb|AAS07363.1| putative exoribonuclease [Oryza sativa Japonica Group]
 gi|108712055|gb|ABF99850.1| 3' exoribonuclease family, domain 1 containing protein, expressed
           [Oryza sativa Japonica Group]
 gi|125588609|gb|EAZ29273.1| hypothetical protein OsJ_13338 [Oryza sativa Japonica Group]
 gi|215768717|dbj|BAH00946.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 260

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 82/240 (34%), Gaps = 25/240 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +  R   +    +  A GS   +FG T ++ +     +    +  +  G +  
Sbjct: 39  RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 98

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
                  +T  R         QG  ++E   M+ +AL   V L       + +   V+++
Sbjct: 99  NVSYTTFATPIRG--------QGTDNKEYSAMLHKALEGAVMLHTFPKTTVDVFALVLES 150

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
            G      I+ A +AL D    M D              V ++S        I+D    E
Sbjct: 151 GGSDLPIIISCASLALADAGIMMYDL-------------VTSVSVSCFGKNIIIDPTSDE 197

Query: 182 DSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ++  D       M     I ++  + E   +S       + L  D  + L  + ++ + +
Sbjct: 198 EAWQDGSLMVAYMPARKEITQLTLTGE---WSDGKITNAVELCMDACSKLCDILRERLKD 254


>gi|296243059|ref|YP_003650546.1| ribosomal RNA-processing protein RRP42 [Thermosphaera aggregans DSM
           11486]
 gi|296095643|gb|ADG91594.1| ribosomal RNA-processing protein RRP42 [Thermosphaera aggregans DSM
           11486]
          Length = 289

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 94/257 (36%), Gaps = 24/257 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR     R I++     + A+GS  V  G T ++T   +E   P +      G +  
Sbjct: 28  RIDGRGLLDYRPINVYLNPIEKADGSSHVILGTTQVITGVKIELGEP-FADRPDEGVLQV 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL---GSRQIII-- 114
               +P ++          G     S E+ R++ R+LR    +D   L     +++ +  
Sbjct: 87  HAEFVPLASQT-----FEPGPPDENSIEVARVVDRSLREPKAIDFKQLVVAPGKKVWVVF 141

Query: 115 -DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ---------LSQVLKGHVAAI 164
            D  +I   G    A++  + +AL        +                   +   VA +
Sbjct: 142 NDIYLIDHGGNIMDASMLSSMLALATAKIPYYEEKEPGVYVVDNKRHTSPLPVNTLVATV 201

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           + G+     IVD    E+  ++      + + G +  +Q        S+      + +A 
Sbjct: 202 TMGIHEDVIIVDPSIEEEVVLNTFLTIAVDEKGRVCGIQKKGIAG-LSKKMLDQAVEIAL 260

Query: 225 DRIADLIKLQKDVISNE 241
           ++   LI L + +++N 
Sbjct: 261 NKGGFLIDLIRKILNNP 277


>gi|6433781|emb|CAB60663.1| RnpH protein [Bradyrhizobium japonicum]
          Length = 86

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 51/86 (59%), Positives = 67/86 (77%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
          MR S R  +++R ++L R V KYAEGSCLVKFGDTH+L TATLE+++P W++    GW+T
Sbjct: 1  MRPSRRAPDELRPVTLERGVVKYAEGSCLVKFGDTHVLVTATLEDRLPPWLKGQGRGWVT 60

Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGR 86
          AEYGMLPR+T  R +REA +G+Q GR
Sbjct: 61 AEYGMLPRATSERTRREASAGKQSGR 86


>gi|84490040|ref|YP_448272.1| exosome complex RNA-binding protein Rrp42 [Methanosphaera
           stadtmanae DSM 3091]
 gi|84373359|gb|ABC57629.1| putative exosome complex, exonuclease 2 subunit [Methanosphaera
           stadtmanae DSM 3091]
          Length = 265

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 90/247 (36%), Gaps = 22/247 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+  R+ ++ R IS+       A+GS +V  G T ++     +   P +      G I  
Sbjct: 22  RIDDRKFSEYRNISIKTNYIGKADGSAMVSIGCTTVIVGVKAQMTTP-FNNAPNSGIIIT 80

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALG------SRQII 113
              +L  ++     R    G     + EI R++ RA+R   VVDL  L       S ++ 
Sbjct: 81  NTELLAIAS-----RNFEYGPPNKFAVEISRVVDRAIRESPVVDLDKLCVIEGSKSWKLH 135

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-------SQVLKGHVAAISC 166
           ID  ++  DG    AA  GA  AL           N   +          +K      + 
Sbjct: 136 IDMYIVDFDGNIMDAACLGAICALLTTKIPTATSVNGEIVIDEENLTPLPIKNRSILCTV 195

Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             +    IVD    E+  +D   +F   + G +  +Q      T +       + +A  R
Sbjct: 196 VKINNQLIVDPSKIEEILMDSSVSFGFREDGSLCALQKCGLN-TLTHKEVTKAMKIASIR 254

Query: 227 IADLIKL 233
             +L  +
Sbjct: 255 AKELFSI 261


>gi|45185722|ref|NP_983438.1| ACR035Wp [Ashbya gossypii ATCC 10895]
 gi|44981477|gb|AAS51262.1| ACR035Wp [Ashbya gossypii ATCC 10895]
          Length = 246

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 90/243 (37%), Gaps = 21/243 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGW 58
           +RL GR+ N++R    +      A +GS  ++ G+  L+T  T   +  +  + N     
Sbjct: 12  LRLDGRRWNELRRFECSINTHPTAADGSSYLEQGNNKLITLVTGPHEPALRSQVNPSKAT 71

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +T    M   +   R K      +   R  E+Q  + R     V L       I +   V
Sbjct: 72  LTVTVNMTKFAAAERSK---TGHKNERRILEMQTALVRTFEKNVMLQLYPRTAIDVQVHV 128

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +Q DGG   + I G  +AL D    M +             +++ IS G+    P++DL+
Sbjct: 129 LQNDGGVLGSMINGITLALIDAGIAMYE-------------YISGISVGLYDTTPLLDLN 175

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             E+  +      V+  S  +  +           D   ++++L       +  +   V+
Sbjct: 176 RLEEQAMSCFTLGVVGKSEKLSLL---LVEDKVPLDRLESVMSLGIAGTHRVRDMMDKVL 232

Query: 239 SNE 241
              
Sbjct: 233 RQH 235


>gi|255720833|ref|XP_002545351.1| exosome complex exonuclease RRP41 [Candida tropicalis MYA-3404]
 gi|240135840|gb|EER35393.1| exosome complex exonuclease RRP41 [Candida tropicalis MYA-3404]
          Length = 240

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 96/243 (39%), Gaps = 22/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGW 58
           +R+ GR+ N++R           + +GS  V+ G+T ++ T     E      ++++H  
Sbjct: 9   LRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVVCTVQGPIEPQLRSQQHSEHAN 68

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           I     +   +T  R KR     +   R  E++ ++ +     + ++      III+  V
Sbjct: 69  IEINLTIANFATFERKKR----NKNEKRLIELKNILEKTFMESIMINLYPRTNIIINIQV 124

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +  DGG  +A      +AL D    M D             +V++I+CG+    P++DL+
Sbjct: 125 LSQDGGLLSAITNSITLALIDSGISMYD-------------YVSSINCGLYDTTPLLDLN 171

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             E++ I      V+  S  +  +           D    +L+LA      +  L    +
Sbjct: 172 NLEENDISNLTIGVIGKSEKLALL---LSEDKMPLDRLENVLSLAIAGSHRIRDLMDQEV 228

Query: 239 SNE 241
              
Sbjct: 229 RKH 231


>gi|224132514|ref|XP_002328307.1| predicted protein [Populus trichocarpa]
 gi|222837822|gb|EEE76187.1| predicted protein [Populus trichocarpa]
          Length = 263

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 82/240 (34%), Gaps = 25/240 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q R           A GS   +FG+T ++ +     +    +  +  G +  
Sbjct: 41  RSDGRGFHQCRSAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESKKAMMYSDKGKLNC 100

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
                  +T            QG  ++E   M+ +AL   V L       + +   V+++
Sbjct: 101 NVSYTTFATTVHG--------QGSDNKEFSTMLHKALEGAVMLETFPKTTVDVFALVLES 152

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
            G      I+ A +AL D    M D              VA +S   L    I+D    E
Sbjct: 153 GGSDLPVVISCASLALADAGIMMYDL-------------VAGVSVSCLGRNLIIDPTLEE 199

Query: 182 DSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +S  D       M     I ++  + E   +S  +    + L  D  + L K+ +  +  
Sbjct: 200 ESFQDGSLMITCMPSHYEITQLTITGE---WSTANLNEAMQLCLDACSKLAKILRSCLKE 256


>gi|327310388|ref|YP_004337285.1| exosome complex RNA-binding protein Rrp42 [Thermoproteus uzoniensis
           768-20]
 gi|326946867|gb|AEA11973.1| exosome complex RNA-binding protein Rrp42 [Thermoproteus uzoniensis
           768-20]
          Length = 273

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 95/239 (39%), Gaps = 25/239 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR  +Q+RE+S+T  V   A+GS     G T ++    +    P +      G + 
Sbjct: 28  VRIDGRTPDQLREVSITTNVVNTADGSAEALLGKTRVVAGVKVGLGQP-FPDAPDEGVLI 86

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ-----II 113
               +LP ++       +  G     + E+ R++ R +R    VD   L   Q     + 
Sbjct: 87  VNAEILPHASPY-----SEIGPPDETAIELARVVDRGIRHSGFVDFKKLAIDQNKVYVLW 141

Query: 114 IDCDVIQADGGTRTAAI---------TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
           +D  V+  DG    AA          T    A+ D      D +NK  L   L     A+
Sbjct: 142 VDLYVLNDDGNLVDAANLAALAALRSTMLPSAVKDETGVKLDRNNKTALPSDLSKAPIAV 201

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           S G +    IVD ++ E+ ++D      +     IV +Q +     F++      ++LA
Sbjct: 202 SIGKIDNRLIVDPNFEEELSLDGRITVTIAQD-SIVSIQKTM--GYFTEQELGQAVDLA 257


>gi|297803352|ref|XP_002869560.1| hypothetical protein ARALYDRAFT_492045 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315396|gb|EFH45819.1| hypothetical protein ARALYDRAFT_492045 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 256

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 85/240 (35%), Gaps = 25/240 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q R   L       A GS   +FG+T ++ +     +    +  +  G +  
Sbjct: 34  RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRESKKAMVFSDVGRLNC 93

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
                  ++            QG   +E   M+ +AL  V+ +       + +   V+++
Sbjct: 94  NVSYTTFASPTLG--------QGTDHKEYSSMLHKALEGVIIMETFPKTTVDVFALVLES 145

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
            G   +  I+ A +AL D    M D              + A+S   +    ++D    E
Sbjct: 146 GGSDLSVVISCASLALADAGIMMYDL-------------ITAVSVSCIGKSLMIDPVTEE 192

Query: 182 DSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +   D       M     I ++  + E   ++  +    + L  D  + L ++ +D++  
Sbjct: 193 EGCEDGSFMMTCMPSRYEITQLTVTGE---WTTPNINEAMQLCLDACSKLGEIMRDLLKQ 249


>gi|328773049|gb|EGF83086.1| hypothetical protein BATDEDRAFT_84610 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 253

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 81/244 (33%), Gaps = 25/244 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R+ +Q+R I         A GS  ++ G+  ++       +      ++  G +  
Sbjct: 31  RADKRRPDQIRPIYTKAGTIPQANGSAYIETGNLKVICAVYGPRQSSSRQLSSSTGTLQC 90

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           ++   P S   R            + +E   ++ +AL   + L       I +   V++ 
Sbjct: 91  DFKFAPFSGEKRKGYAK-----DDQEKEFSMVLEQALTPSIRLENYPKFTIQVFVIVLEN 145

Query: 122 DG--GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLD 178
           DG      AAI+ A +AL +    M D              VAA S          +D+ 
Sbjct: 146 DGSMSALAAAISCASLALANAGIEMLD-------------MVAASSIAYFGESMLCLDVS 192

Query: 179 YGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
             E+   D       M     +  +  +    T         + L  D  + +  + ++ 
Sbjct: 193 LKEEMVQDGAMLVSYMPSLNEVTHLIQTGLATT---SQCTKAIELGVDACSQIHTILQEA 249

Query: 238 ISNE 241
           + +E
Sbjct: 250 LLSE 253


>gi|291237650|ref|XP_002738745.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
          Length = 273

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 83/245 (33%), Gaps = 22/245 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ N +R I L   +   A+GS  ++  DT +        +V         G +T 
Sbjct: 37  RHDGRKPNDIRPIFLRCGIISNAKGSAYIETKDTKVTCAVYGPRQVVRREDFKLTGTLTC 96

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           ++     S   R +       Q    +++  ++ +A+   V L      QI I   V+Q 
Sbjct: 97  DFKFATFSCQKRQQHM-----QSSNEKDLSLIVLQAMEPAVCLEKYPRAQIDIFITVLQN 151

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
            G   +AAIT A  AL      M D              V   S   +    +VD  Y E
Sbjct: 152 GGSALSAAITCASAALAAAGIEMYDV-------------VVGCSTRQIGNTCLVDPAYDE 198

Query: 182 DSTIDV----DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +         + +  +     + +V    E      +     ++   D    +  + +  
Sbjct: 199 EYNSKTGGKNNGSLCLGLMPSLNQVSAFIECGELETEILMQSIHSCVDGCMRIYPVVRQC 258

Query: 238 ISNEV 242
           ++  +
Sbjct: 259 LTKSI 263


>gi|320581308|gb|EFW95529.1| exosome component Ski6p, putative [Pichia angusta DL-1]
          Length = 246

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 91/244 (37%), Gaps = 31/244 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKV-----PMWIRNT 54
           +R+ GR+ N++R           A +GS  V+ G++ +L       +           + 
Sbjct: 12  LRVDGRRWNELRRFECQINTHPNAADGSSYVQQGNSKVLCLVKGPMEHGANLAAGTKLDP 71

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
               ++      P ++  R KR     +   R QEI  ++ R     + L       I I
Sbjct: 72  NGPVLSLNINYPPFASNERKKRP----KNDRRLQEISIILKRCFMKTIVLKNYSRTAIDI 127

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
           +  V+  DGG          +AL D    + D             +V+A+S G+    P+
Sbjct: 128 NLTVLAMDGGLLACFCNAITLALIDAGISLYD-------------YVSAVSVGLYDQTPL 174

Query: 175 VDLDYGEDSTIDVDANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRI---ADL 230
           +D++  E++    D +F+     G   ++  +        D    +++L  +      +L
Sbjct: 175 LDMNALEEN----DLSFITIGVVGDSDKLNLTLCEDKLPLDKLERLISLGIEGCHRLKEL 230

Query: 231 IKLQ 234
           + LQ
Sbjct: 231 MDLQ 234


>gi|188996726|ref|YP_001930977.1| Polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|254782742|sp|B2V900|PNP_SULSY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|188931793|gb|ACD66423.1| Polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 703

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 89/250 (35%), Gaps = 27/250 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-----NTK 55
           +R+ GR+  ++R I +   V     GS +   G T    T TL       I         
Sbjct: 311 IRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSPSEGQIEESIEAGET 370

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P STG       VS R+ G       +  RAL  ++         I + 
Sbjct: 371 LKRFMLHYNFPPFSTGEAKPPRPVSRREIGHG----NLAERALEPLIPSEEEFPYVIRVV 426

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            D+++++G T  A + G  +AL D    M             K HVA I+ G++      
Sbjct: 427 SDILESNGSTSMATVCGGSLALFDAGVPM-------------KKHVAGIAMGLIKSEDKF 473

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G +  +Q   +    +++     L  A++    ++
Sbjct: 474 VVLSDILGDEDHLGDMDFKVAGTRDG-VTSIQMDIKVKGLTREILQKALEQAREGRNYIL 532

Query: 232 KLQKDVISNE 241
            L    I   
Sbjct: 533 DLMYQAIPEP 542



 Score = 98.2 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 87/231 (37%), Gaps = 31/231 (13%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLP 67
             S+      K A G+ +V+ GDT +L  A + E+    +       ++      YG +P
Sbjct: 14  PYSIETGYFAKQANGAVIVRQGDTAVLVAAVMSEEPQADIDFLPLTVEYREKYYAYGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
              G  VKRE   G+   R   + R I R +R +          +II    + AD     
Sbjct: 74  ---GGFVKRE---GKPSEREILVARNIDRPIRPLFPKGFYND--VIITAYTLSADDQYDP 125

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
               I GA  ALH                   +G +A +    + G  IV+  Y + +  
Sbjct: 126 DVLGIVGASAALH-------------ISDIPFEGPIAGVRVCRVDGQFIVNPTYQQKAKS 172

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D++   V      IV V+G A+     ++     +      I  LI+LQ++
Sbjct: 173 DLEI-VVAGSKDAIVMVEGGAKEVP--EEVILEAMLFGHQEIKKLIELQEE 220


>gi|301099917|ref|XP_002899049.1| exosome complex exonuclease MTR3-like protein [Phytophthora
           infestans T30-4]
 gi|262104361|gb|EEY62413.1| exosome complex exonuclease MTR3-like protein [Phytophthora
           infestans T30-4]
          Length = 252

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 78/226 (34%), Gaps = 22/226 (9%)

Query: 9   NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHGWITAEYGMLP 67
           ++MR   +       A GS  V+ G T +L             R  +K G +  +    P
Sbjct: 35  DEMRRPFMQLGAVSGAAGSAYVELGRTRVLCAVYGPRTDTRARREFSKDGQLVCDVKYAP 94

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
            +     +RE     Q     E+  ++  AL   V L  L    I +   +++ DGG   
Sbjct: 95  FA-DKLTRRE---RGQDPDEMELSAIVEEALAPAVMLHKLPKCIISVFVTILEDDGGVLA 150

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+  A +AL D    M D              V A S G++ G  ++D    E+   D 
Sbjct: 151 AALNCASLALADAAVEMYDV-------------VTASSAGIVNGSVVLDPSREEEQRGDG 197

Query: 188 DANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
                 M   G +  +    +            ++L  D    +I+
Sbjct: 198 KLALAYMPSMGRVTYM---LQAGKIHHTQLQEAVDLCTDACTGVIR 240


>gi|257076445|ref|ZP_05570806.1| exosome complex RNA-binding protein Rrp42 [Ferroplasma acidarmanus
           fer1]
          Length = 260

 Score =  138 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 88/228 (38%), Gaps = 16/228 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR     REI +T      A GS +V+ G T ++    +EE  P +  +   G +  
Sbjct: 26  RLDGRGLQDYREIKITENFVPKAAGSAMVEIGKTKVVAGIKVEEGDP-FEDSPDSGVMAL 84

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSR--QII 113
              +LP +          SG    ++ E  R++ R +R   +VD S L    G R   I 
Sbjct: 85  NIELLPMAFPT-----FESGPPSEQAIEYSRVVDRGIRESKMVDTSKLVIESGKRVWMIF 139

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +D DV+  DG    AA   A  AL + +        K   S  +     +I+   +    
Sbjct: 140 VDIDVLNYDGNIIDAATLAAVTALKNTVVPASKIGQK-DYSLPINATPVSITMVKIGDEI 198

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           + D D  E+   +      + +  +I  +Q   +   FS D     + 
Sbjct: 199 VCDPDLEEEQVSNGRITVTIAEDHNIHAMQK-GDIGEFSLDEIRKAIK 245


>gi|167464772|ref|ZP_02329861.1| ribonuclease PH [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 80

 Score =  138 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 40/80 (50%), Positives = 58/80 (72%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
          MR  GRQ N++R + +T   +K+AEGS L++ GDT ++ TAT+EE+VP +++N   GW+T
Sbjct: 1  MRADGRQPNELRPVRITPNYNKHAEGSVLIEVGDTKVICTATIEERVPPFLKNEGKGWVT 60

Query: 61 AEYGMLPRSTGNRVKREAVS 80
          AEY MLPR+T  R +REA  
Sbjct: 61 AEYSMLPRATQVRNQREASK 80


>gi|149066120|gb|EDM15993.1| exosome component 4 (predicted), isoform CRA_b [Rattus norvegicus]
          Length = 211

 Score =  137 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 69/195 (35%), Gaps = 21/195 (10%)

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
                     +  +Y     STG R +R     +    S E+   + +   + +      
Sbjct: 28  RSRALPDRALVNCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHP 83

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
             QI I   V+QADGGT  A +  A +A+ D    M D              V A S G 
Sbjct: 84  RSQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRD-------------FVCACSAGF 130

Query: 169 LCGYPIVDLDYGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
           + G  + DL + E++          +  SG I  ++  +      +DH   +L  A    
Sbjct: 131 VDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDSR---LHEDHLEQVLEAAAQAA 187

Query: 228 ADLIKLQKDVISNEV 242
            D+  L   V+   V
Sbjct: 188 RDVHTLLDRVVRQHV 202


>gi|189208598|ref|XP_001940632.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187976725|gb|EDU43351.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 250

 Score =  137 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 84/236 (35%), Gaps = 14/236 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---HG 57
           +RL GR+ N++R I         A+GS  ++ G+T +L + T   +     +        
Sbjct: 13  LRLDGRRWNELRRIHAQISTQAAADGSSYLEQGNTKILVSVTGPHEGRQSGQRGGADKQA 72

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +  E      S   R KR     +   R+ E++  I  A   V+ L       I ++  
Sbjct: 73  KVEVEINFAGFSGVERRKR-----KSDKRTSEMEHCIRSAFEGVLLLHLYPHSTITLNIH 127

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           ++  DG    A I  + +AL D    M D       +       A  +       P++DL
Sbjct: 128 IVSQDGSLLAACINASTLALIDAGIPMTDYLVACTAASSASASAADNASAD---DPLLDL 184

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +  E+  +       + +S  +         +    +   +ML +  +    +  +
Sbjct: 185 NNQEELELPFLTVGTLGESDKVAVCLM---ESRVRMERLESMLAVGIEGCKRMRNI 237


>gi|156537299|ref|XP_001606070.1| PREDICTED: similar to exosomal 3-5 exoribonuclease complex subunit
           Rrp41-like protein [Nasonia vitripennis]
          Length = 284

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 5/143 (3%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+  R+  ++R++ +   V   A+GS  ++ G T ++ +A    ++P     +  G I  
Sbjct: 39  RVDSRKHKELRKMFIKLGVVSQAKGSAYIEMGQTKVICSAFDPREIPNKTSYSTQGEIFC 98

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           E+     +T  R   +     Q    +E   ++ RAL   V      + Q+ +   V+  
Sbjct: 99  EFKFASFATCKRKGHQ-----QDTEEKEYSLIMQRALEPAVCRHEFPNFQVDVYALVLDN 153

Query: 122 DGGTRTAAITGAWVALHDCLQHM 144
            G    AAI GA +AL +    M
Sbjct: 154 GGSALGAAIMGASLALANASVPM 176


>gi|260941676|ref|XP_002615004.1| hypothetical protein CLUG_05019 [Clavispora lusitaniae ATCC 42720]
 gi|238851427|gb|EEQ40891.1| hypothetical protein CLUG_05019 [Clavispora lusitaniae ATCC 42720]
          Length = 244

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 84/238 (35%), Gaps = 22/238 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGW 58
           +R+ GR+ N++R            A+GS  ++ G+T ++      ++       N     
Sbjct: 12  LRVDGRRWNELRRFECKINTHANSADGSSYIEQGNTKVMCMVHGPKEPSLRSQSNQNRAT 71

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           I     +   ST  R KR     R   R  E++  + R     +         I +   V
Sbjct: 72  IEINLNVASFSTLERKKR----NRTEKRMVELKTTLERTFEQSILAHLYPRTLIEVHVQV 127

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +  DGG   +      +AL D    M D             +V+A++  +    P++DL+
Sbjct: 128 LAQDGGMLASITNAITLALVDAGIAMYD-------------YVSAVNVALHDQTPLLDLN 174

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             E++ +      V+  S  +  +           D   A+L +A      +  L  +
Sbjct: 175 TLEENDMSCLTIGVVGKSEKLAMLLL---EDKMPLDRLEAVLGIAIAGGHRIRDLMDE 229


>gi|115474519|ref|NP_001060856.1| Os08g0116800 [Oryza sativa Japonica Group]
 gi|50725627|dbj|BAD33094.1| putative ribonuclease PH [Oryza sativa Japonica Group]
 gi|113622825|dbj|BAF22770.1| Os08g0116800 [Oryza sativa Japonica Group]
 gi|125559948|gb|EAZ05396.1| hypothetical protein OsI_27604 [Oryza sativa Indica Group]
 gi|125601990|gb|EAZ41315.1| hypothetical protein OsJ_25825 [Oryza sativa Japonica Group]
 gi|215686578|dbj|BAG88831.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 262

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 79/240 (32%), Gaps = 25/240 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +  R   +    +  A GS   +FG T ++ +     +    +  +  G +  
Sbjct: 41  RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 100

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
                  +T  R +             E   M+ +AL   V L       + +   V+++
Sbjct: 101 NVSYTTFATPIRGQGMDNK--------EYSAMLHKALEGAVMLHTFPKTTVDVFALVLES 152

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
            G      I+ A +AL D    + D              V ++S        I+D    E
Sbjct: 153 GGSDLPIIISCASLALADAGIMIYDL-------------VTSVSVSCFGKNIIIDPTSDE 199

Query: 182 DSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ++  D       M     I ++  + E   +S       + L  D  + L  + ++ + +
Sbjct: 200 EAWQDGSIMVAYMPARKEITQLTLTGE---WSDGKITNAVELCMDACSKLCDILRERLKD 256


>gi|242046408|ref|XP_002461075.1| hypothetical protein SORBIDRAFT_02g040250 [Sorghum bicolor]
 gi|241924452|gb|EER97596.1| hypothetical protein SORBIDRAFT_02g040250 [Sorghum bicolor]
          Length = 261

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 82/240 (34%), Gaps = 25/240 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +  R   +    +  A GS   +FG T ++ +     +    +  +  G +  
Sbjct: 39  RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMMYSDIGRLNC 98

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
                  +T  R         QG  ++E   M+ +AL   V L       + +   V+++
Sbjct: 99  NVSYTTFATPVRG--------QGADNKEYSSMLYKALEGAVMLHTFPKTTVDVFALVLES 150

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
            G      I+ A +AL D    M D              V ++S        I+D    E
Sbjct: 151 GGSDLPIIISCASLALADAGIMMYDL-------------VTSVSVSCFGKNIIIDPTSDE 197

Query: 182 DSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ++  D       M     I ++  + E   +S       + L  D  + L  + +D + +
Sbjct: 198 EAWQDGSLVVAFMPARKEITQLTLTGE---WSDGRITNAVELCMDACSKLGDILRDHLKD 254


>gi|42567185|ref|NP_194479.2| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
           thaliana]
 gi|124300968|gb|ABN04736.1| At4g27490 [Arabidopsis thaliana]
 gi|124301080|gb|ABN04792.1| At4g27490 [Arabidopsis thaliana]
 gi|332659949|gb|AEE85349.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
          Length = 256

 Score =  135 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 84/240 (35%), Gaps = 25/240 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q R   L       A GS   +FG+T ++ +     +    +  +  G +  
Sbjct: 34  RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNC 93

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
                  ++            QG   +E   M+ +AL  V+ +       + +   V+++
Sbjct: 94  NVSYTNFASPTLG--------QGTDHKEYSSMLHKALEGVIMMETFPKTTVDVFALVLES 145

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
            G   +  I+ A +AL D    M D              + A+S   +    ++D    E
Sbjct: 146 GGSDLSVLISCASLALADAGIMMYDL-------------ITAVSVSCIGKSLMIDPVTEE 192

Query: 182 DSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +   D       M     I ++  + E   ++  +    + L  D  + L ++ +D +  
Sbjct: 193 EGCEDGSFMMTCMPSRYEITQLTITGE---WTTPNINEAMQLCLDASSKLGEIMRDCLKQ 249


>gi|73974732|ref|XP_857418.1| PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal
           RNA processing protein 41) (Exosome component 4) (p12A)
           isoform 3 [Canis familiaris]
          Length = 226

 Score =  135 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 68/195 (34%), Gaps = 21/195 (10%)

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
                     +  +Y     STG R +R     +    S E+   + +   + +      
Sbjct: 43  RARALPDRALVNCQYSSATFSTGERKRRPHGDRK----SCEMGLHLRQTFEAAILTQLHP 98

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
             QI I   V+QADGGT  A +  A +A+ D    M D              V A S G 
Sbjct: 99  RSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRD-------------FVCACSAGF 145

Query: 169 LCGYPIVDLDYGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
           +    + DL + E++          +  SG I  ++  A      +DH   +L  A    
Sbjct: 146 VDNTALADLSHVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDHLEQVLEAAARAA 202

Query: 228 ADLIKLQKDVISNEV 242
            D+  +   V+   V
Sbjct: 203 RDVHTVLDRVVRQHV 217


>gi|326514708|dbj|BAJ99715.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 262

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 85/241 (35%), Gaps = 25/241 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +  R   +    +  A GS   +FG T ++ +     +    +  +  G +  
Sbjct: 40  RADGRSLHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 99

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
                  +TG R         QG  ++E   M+ +AL   V L       + +   V+++
Sbjct: 100 SVSYTTFATGIRG--------QGLENKEYSGMLHKALEGAVMLHTFPKTTVDVFALVLES 151

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
            G      I+ A +AL D    M D              V ++S   L    I+D    E
Sbjct: 152 GGSDLPIIISCASLALADAGIMMYDL-------------VTSVSVSCLGKNVIIDPTSDE 198

Query: 182 DSTID-VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ++  D       M     I ++  + E   ++       + L  D  + L ++ ++ + +
Sbjct: 199 EAWQDGGLMVSYMPARKEITQLTLTGE---WTDGKITNAVELCMDACSKLCEILRERLKD 255

Query: 241 E 241
            
Sbjct: 256 P 256


>gi|148697599|gb|EDL29546.1| exosome component 4, isoform CRA_c [Mus musculus]
          Length = 211

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 68/195 (34%), Gaps = 21/195 (10%)

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
                     +  +Y     STG R +R     +    S E+   + +   + +      
Sbjct: 28  RSRALPDRALVNCQYSSATFSTGERKRRPHGDRK----SCEMGLQLRQTFEAAILTQLHP 83

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
             QI I   V+QADGGT  A +  A +A+ D    M D              V A S G 
Sbjct: 84  RSQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRD-------------FVCACSAGF 130

Query: 169 LCGYPIVDLDYGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
           + G  + DL + E++          +  SG I  ++  +      +DH   +L  A    
Sbjct: 131 VDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDSR---LHEDHLEQVLEAAAQAA 187

Query: 228 ADLIKLQKDVISNEV 242
             +  L   V+   V
Sbjct: 188 RGVHTLLDLVVRQHV 202


>gi|167045226|gb|ABZ09886.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           crenarchaeote HF4000_APKG8O8]
          Length = 273

 Score =  135 bits (340), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 94/250 (37%), Gaps = 22/250 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  ++ R +S+   V  +A GS  V+ GDT ++    ++   P +    + G    
Sbjct: 24  RIDGRALDEHRPLSIDVGVIPHANGSARVRLGDTEVVAGVKIQPDRP-FPDMGEKGIFIC 82

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQIIID 115
              +LP +  +       +G       EI R++ R +R   ++DLS +        I + 
Sbjct: 83  TAEILPLAHPS-----VETGPPQPYVIEIARVVDRGIRESGMIDLSQMVLVKDKSVIGLF 137

Query: 116 CD--VIQADGGTRTAAITGAWVALHDCLQH---MEDCSNKFQLSQ----VLKGHVAAISC 166
            D  V   DG    A    +  A+         M+D        +     +     +++ 
Sbjct: 138 ADNVVTDHDGNLFDACSYASTAAVLTSKMPKWEMKDDKPVLVDGEESDTPITTIPVSVTM 197

Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           G++  Y IVD +  E   +D          G+IV +Q       FS D       L+   
Sbjct: 198 GLIGEYIIVDPNLDEWECLDARITITTNSDGNIVALQKGGSSG-FSLDQLIKCSELSIST 256

Query: 227 IADLIKLQKD 236
             ++ ++ K 
Sbjct: 257 GPEIREIIKQ 266


>gi|330917879|ref|XP_003297997.1| hypothetical protein PTT_08574 [Pyrenophora teres f. teres 0-1]
 gi|311329045|gb|EFQ93909.1| hypothetical protein PTT_08574 [Pyrenophora teres f. teres 0-1]
          Length = 250

 Score =  134 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 83/233 (35%), Gaps = 14/233 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---HG 57
           +RL GR+ N++R I         A+GS  ++ G+T +L + T   +     +        
Sbjct: 13  LRLDGRRWNELRRIHAQISTQAAADGSSYLEQGNTKILVSVTGPHEGRQSGQRGGADKQA 72

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +  E      S   R KR     +   R+ E++  I  A   V+ L       I ++  
Sbjct: 73  KVEVEINFAGFSGVERRKR-----KSDKRTSEMEHCIRSAFEGVLLLHLYPHSIITLNIH 127

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           ++  DG    A I  + +AL D    M D       +       A  +       P++DL
Sbjct: 128 IVSQDGSLLAACINASTLALIDAGIPMTDYLVACTAASSASASAADNASAD---DPLLDL 184

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           +  E+  +       + DS  +         +    +   +ML +  +    +
Sbjct: 185 NNQEELELPFLTVGTLGDSDKVAVCLM---ESRVRMERLESMLAVGIEGCKRM 234


>gi|320591734|gb|EFX04173.1| exosome complex exonuclease rrp41 [Grosmannia clavigera kw1407]
          Length = 511

 Score =  134 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 87/255 (34%), Gaps = 27/255 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV------------- 47
           +R+ GR+ N++R      R    A+GS  ++ G+T ++   T   +V             
Sbjct: 236 LRVDGRRWNELRRCHAEVRTQAAADGSSYLEMGNTKVMCVLTGPSEVGQSRARMAGGGGG 295

Query: 48  --PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105
                  + K   +     +   S+ NR +R     RQ  R+QE+   I R L +V+   
Sbjct: 296 GGGGGGGDAKDAEVIVNIVVAGFSSVNRQRR----SRQDKRTQEMAATISRTLAAVLHTH 351

Query: 106 ALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS 165
                 I I   V+  DG    A I  A +A  D    M D               A  +
Sbjct: 352 LYPRSTITISLHVLSQDGSLLAALINAATLAAVDAGIPMADYVVACSAGSSSSYAAADDA 411

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                  P++DL+  E+  +       +  S  +  +   +            ML +A D
Sbjct: 412 A-----DPLLDLNLQEEQELPGLTVATLGASDRVAALVCESRVQA---GRLEGMLAVAVD 463

Query: 226 RIADLIKLQKDVISN 240
               +  +   V+  
Sbjct: 464 GCKQVRAILDKVVRE 478


>gi|171185833|ref|YP_001794752.1| exosome complex RNA-binding protein Rrp42 [Thermoproteus
           neutrophilus V24Sta]
 gi|170935045|gb|ACB40306.1| 3' exoribonuclease [Thermoproteus neutrophilus V24Sta]
          Length = 273

 Score =  134 bits (339), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 97/252 (38%), Gaps = 25/252 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+  ++R + +   V K A+GS  VK G TH++    +    P +      G +  
Sbjct: 29  RVDGREPERVRSVEIRTGVVKTADGSAEVKLGRTHVVAGVKVGLGQP-FPDAPDEGVLVV 87

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSAL----GSRQI-II 114
              +LP ++          G     + E+ R++ R +R    VD   L    G   I  +
Sbjct: 88  SAEVLPHASPY-----TEVGPPDESAIELARVVDRGIRHCGYVDFKKLAVEGGKAYILWV 142

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHME---------DCSNKFQLSQVLKGHVAAIS 165
           D  VI  DG    AA   A  AL +               D +NK  L   L     A+S
Sbjct: 143 DLYVINDDGNLVDAANLAAVAALKNTQLPAVVKEEQGVKLDRNNKTPLPVDLNKAPIAVS 202

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
            G +    ++D    E+ ++D    F +++   IV  Q +     F+     A L+LA  
Sbjct: 203 IGKIGSVLLLDPTLEEELSLDGRITFTISED-RIVAAQKT--IGAFAPQELEAALDLAWK 259

Query: 226 RIADLIKLQKDV 237
                 +  K+ 
Sbjct: 260 GRGQYAEFLKNA 271


>gi|118594124|ref|ZP_01551471.1| polynucleotide phosphorylase/polyadenylase [Methylophilales
           bacterium HTCC2181]
 gi|118439902|gb|EAV46529.1| polynucleotide phosphorylase/polyadenylase [Methylophilales
           bacterium HTCC2181]
          Length = 716

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 96/242 (39%), Gaps = 18/242 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  +  ATL    +E++   ++     
Sbjct: 324 RIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQAIVVATLGTGRDEQIIDALQGEFKD 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P +TG   +      R+ G      ++  R L + +         I +  +
Sbjct: 384 RFMLHYNFPPYATGETGRVGTPKRREIGHG----KLAKRGLSAALPSKEDFDYTIRLVSE 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A+I G  +A+ D    M D      +  + + +  A+         + D+
Sbjct: 440 ITESNGSSSMASICGGTMAMMDAGVPMTDHVAGIAMGLIKEDNRVAV---------LTDI 490

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     TD+G I  +Q   +    + +     L+ A++ I  ++K+ K  
Sbjct: 491 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKITGITSEIMQVALSQAREGIDHILKIMKKT 549

Query: 238 IS 239
           + 
Sbjct: 550 LK 551



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 80/228 (35%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           +++    + + A+G+ +V +GDT +L TA       E    +     +   T   G +P 
Sbjct: 24  LTIETGEIGRQADGAVMVSYGDTVVLVTAVGNKNAREGQDFFPLTVDYQEKTYAAGKIP- 82

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +     R+I R LR +   +     QI+       ++  +   
Sbjct: 83  --GGFFKRE---GRPSEKETLTCRLIDRPLRPLFPKNFYNEIQIVATVMSSDSEIDSDIP 137

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           AI GA  AL                     G V A   G +    +++    +    ++D
Sbjct: 138 AIIGASAALAISGI-------------PFYGPVGASRVGYIDEKFVINPTKTQLVDSELD 184

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              V      ++ V+  +E     +      +      +  +IK+  +
Sbjct: 185 L-VVAGSDAAVLMVE--SEAKELPEKVMLDAVLAGHKAMQPVIKMINE 229


>gi|67471870|ref|XP_651847.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
 gi|56468626|gb|EAL46457.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
          Length = 238

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 85/232 (36%), Gaps = 27/232 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR+  +MR+  +       A+GS  V+ G+T +        +     RN +   +  
Sbjct: 10  RLDGRRTTEMRKCEMEINFLSTADGSARVRMGNTIVEAVVFGPLEGRR--RNREGAELMV 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            Y     +T  R +RE +         E   ++ +    ++    L    I +   V+Q 
Sbjct: 68  SYSQATFAT--RKRREQM---HDRTMIETAELLKQMYEQIIITKLLPETMIDLRVQVMQD 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DG    A I    +AL D    M D              VAA   G + G  +VD++  E
Sbjct: 123 DGSVTAAVINACTLALIDAGIPMIDI-------------VAAAEGGYIDGKMVVDMNKDE 169

Query: 182 DSTIDVDANF---VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           ++   V  N    +M  SG +  +Q               +L++ ++    +
Sbjct: 170 ENVGTV-FNVHTAIMQKSGAVALLQ---TEGKMPLQRLGDLLSIVEEGAKTI 217


>gi|225435349|ref|XP_002285257.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147834996|emb|CAN61380.1| hypothetical protein VITISV_037546 [Vitis vinifera]
 gi|297746275|emb|CBI16331.3| unnamed protein product [Vitis vinifera]
          Length = 254

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 82/241 (34%), Gaps = 25/241 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +Q R   L       A GS   +FG+T ++ +     +    +  +  G + 
Sbjct: 31  VRPDGRGFHQCRPAFLKTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMAYSGTGRLN 90

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
                   +   R +     G           M+ +AL   + + +     + +   V++
Sbjct: 91  CNVSYTTFAMPIRGQGSDHKG--------YSSMLHKALEGAIIVESFPKTTVDVFALVLE 142

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           + G      I+ A +AL D    M D              VA++S   L    ++D    
Sbjct: 143 SGGSDLPVVISCASLALADAGIMMYDL-------------VASVSVSCLGKNLVIDPILE 189

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           E+S  D       M     + ++  + E   +S       + +  +  + L K+ +  + 
Sbjct: 190 EESYQDGSLLITCMPSRNEVTQLTVNGE---WSTPRVHEAMQICLEACSKLAKIIRSCLK 246

Query: 240 N 240
            
Sbjct: 247 E 247


>gi|326521482|dbj|BAK00317.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 262

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 85/241 (35%), Gaps = 25/241 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +  R   +    +  A GS   +FG T ++ +     +    +  +  G +  
Sbjct: 40  RADGRSLHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 99

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
                  +TG R         QG  ++E   M+ +AL   V L       + +   V+++
Sbjct: 100 SVSYTTFATGIRG--------QGLENKEYSGMLHKALEGAVMLHTFPKTTVDVFALVLES 151

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
            G      I+ A +AL D    M D              V ++S   L    I+D    E
Sbjct: 152 GGSDLPIIISCASLALADAGIMMYDL-------------VTSVSVSCLGKNVIIDPTSDE 198

Query: 182 DSTID-VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ++  D       M     I ++  + E   ++       + L  D  + L ++ ++ + +
Sbjct: 199 EAWQDGGLMVSYMPARKEITQLTLTGE---WTDGKITNAVELYMDACSKLCEILRERLKD 255

Query: 241 E 241
            
Sbjct: 256 P 256


>gi|237757160|ref|ZP_04585586.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237690677|gb|EEP59859.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 613

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 87/249 (34%), Gaps = 27/249 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-----NTKH 56
           R+ GR+  ++R I +   V     GS +   G T    T TL       I          
Sbjct: 312 RIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSPSEGQIEESIEAGETL 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG       VS R+ G       +  RAL  ++         I +  
Sbjct: 372 KRFMLHYNFPPFSTGEAKPPRPVSRREIGHG----NLAERALEPLIPSEEEFPYVIRVVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           D+++++G T  A + G  +AL D    M             K HVA I+ G++       
Sbjct: 428 DILESNGSTSMATVCGGSLALFDAGVPM-------------KKHVAGIAMGLIKSEDKFV 474

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  A+     ++ 
Sbjct: 475 VLSDILGDEDHLGDMDFKVAGTRDG-VTSIQMDIKVRGLTKEILQKALEQARVGRYYILD 533

Query: 233 LQKDVISNE 241
           L    I   
Sbjct: 534 LMYQAIPEP 542



 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 87/231 (37%), Gaps = 31/231 (13%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLP 67
             S+      K A G+ +V+ GDT +L  A + E+    +       ++      YG +P
Sbjct: 14  PYSIETGYFAKQANGAVIVRQGDTAVLVAAVMSEEPQADIDFLPLTVEYREKYYAYGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
              G  VKRE   G+   R   + R I R +R +          +II    + AD     
Sbjct: 74  ---GGFVKRE---GKPSEREILVARNIDRPIRPLFPKGFYND--VIITAYTLSADDQYDP 125

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
               I GA  ALH                   +G +A +    + G  IV+  Y + +  
Sbjct: 126 DVLGIVGASAALH-------------ISDIPFEGPIAGVRVCRVDGQFIVNPTYQQKAKS 172

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D++   V      IV V+G A+     ++     +      I  LI+LQ++
Sbjct: 173 DLEI-VVAGSKDAIVMVEGGAKEVP--EEVILEAMLFGHQEIKKLIELQEE 220


>gi|255711166|ref|XP_002551866.1| KLTH0B01738p [Lachancea thermotolerans]
 gi|238933244|emb|CAR21428.1| KLTH0B01738p [Lachancea thermotolerans]
          Length = 245

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 95/243 (39%), Gaps = 21/243 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGW 58
           +R+ GR+ N++R +  +      A +GS  ++ G+  ++T  T  ++  +  + N     
Sbjct: 12  LRVDGRRWNELRRLECSINTHANASDGSSYLEQGNNKVITLVTGPQEPKLRSQMNVTKAT 71

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           I+    +   S   R K    S +   R  E+Q  + R     V L      QI I   V
Sbjct: 72  ISVALNITRFSKIERSK---SSHKNERRVLEMQTALVRTFEKNVMLHLYPRTQIEIQIHV 128

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +Q DGG  ++ I G  +AL D    M D             +++ +S G+    P++DL+
Sbjct: 129 LQQDGGLMSSLINGITLALIDAGIAMYD-------------YISGVSIGLYDTTPLLDLN 175

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             E++ +      V+  S  +  +           D   ++L +       + +L    +
Sbjct: 176 SVEENAMSSVTLGVVGKSEKLSLL---LVEDKIPLDRMESVLAIGIAGSHRIRELMDKEL 232

Query: 239 SNE 241
              
Sbjct: 233 RKH 235


>gi|217967533|ref|YP_002353039.1| Polyribonucleotide nucleotidyltransferase [Dictyoglomus turgidum
           DSM 6724]
 gi|254782720|sp|B8E2S5|PNP_DICTD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|217336632|gb|ACK42425.1| Polyribonucleotide nucleotidyltransferase [Dictyoglomus turgidum
           DSM 6724]
          Length = 693

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 98/247 (39%), Gaps = 25/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGW 58
           R+ GR+ N++R +S    V     GS L + G+T +L+  T    EE++   +  ++   
Sbjct: 315 RVDGRRLNELRPVSCEVGVLSRVHGSALFQRGETQVLSVVTLGAGEEQIIESVIESEPKR 374

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
               Y   P S G          R+ G       +  RAL  ++         I +  +V
Sbjct: 375 YIHHYNFPPFSVGEAKPLRGPKRREIGHG----ALAERALLPLIPKEEEFPYTIRVVSEV 430

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YPI 174
           + ++G T  A++ G+ ++L D                 +K HVA ++ G++        +
Sbjct: 431 LSSNGSTSMASVCGSSLSLMDAGV-------------PIKTHVAGVAMGLIKEGEKFEVL 477

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED+   +D     T +G I  VQ   +    S +     L  AK+    ++ + 
Sbjct: 478 TDIQGLEDALGGMDFKIAGTKNG-ITAVQLDIKVDGLSYEIIEKTLKQAKEARYQILDIM 536

Query: 235 KDVISNE 241
           +  IS  
Sbjct: 537 EKTISQP 543



 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 88/231 (38%), Gaps = 27/231 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLPR 68
           + +    V+  A G+ LV++G+T +L T    E+    V  +    ++       G +P 
Sbjct: 16  LKIDIGKVAWQATGAALVQYGETTVLVTVVASEEKKEDVDFFPLTVEYVERLYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+         R+I R LR +         Q+I+       +  T   
Sbjct: 75  --GGFFKRE---GKPTEPEILFARLIDRPLRPLFSKDFRNEVQVIVTVLSYDHENSTDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           +I GA  A+                    KG + A+  G       ++      +++ +D
Sbjct: 130 SIIGASCAIMLAGL-------------PFKGPIGAVRVGWDGKEWYINPSVALSNSLLLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                T    ++ ++G  +     ++ F   +  A ++I ++I  Q++++S
Sbjct: 177 LVVAGTKDA-VLMIEGDGKEVP--EEIFLEGIIRAHEQIGEVINFQEEILS 224


>gi|325969193|ref|YP_004245385.1| 3' exoribonuclease [Vulcanisaeta moutnovskia 768-28]
 gi|323708396|gb|ADY01883.1| 3' exoribonuclease [Vulcanisaeta moutnovskia 768-28]
          Length = 283

 Score =  132 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 93/239 (38%), Gaps = 28/239 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+  R  N  RE+S+   V + A+GS LV  G+T ++    +E   P +      G + 
Sbjct: 27  VRIDNRGLNDYRELSIRVGVVRTADGSSLVSLGNTKVMAGVKVEVGKP-FEDTPDEGALI 85

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------I 112
               + P ++ +        G     + EI R++ RA+R    ++  +L          +
Sbjct: 86  VNLEIAPAASPD-----IEPGPPDENAIEIARVVDRAIRHSGFLNFKSLSIVTGRHAWFL 140

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH---MEDCSNKFQLSQVLKGHVA------- 162
            +D  V+  DG    A+   A  AL +       ++   N  ++ +  K  +A       
Sbjct: 141 WVDIYVLNHDGNLVDASTIAAITALMNTALPKVELDPAGNILRIDRSNKSPLALNVDKLP 200

Query: 163 -AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
             I+   L  + +VD    E+   D          G++V +Q       F++D    M+
Sbjct: 201 LTITHAKLGNFLLVDPTREEEDLSDG-IYITGIAGGNVVAIQKV--TGAFTKDEVNYMI 256


>gi|307594959|ref|YP_003901276.1| 3' exoribonuclease [Vulcanisaeta distributa DSM 14429]
 gi|307550160|gb|ADN50225.1| 3' exoribonuclease [Vulcanisaeta distributa DSM 14429]
          Length = 283

 Score =  132 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 91/239 (38%), Gaps = 28/239 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+  R  N  RE+S+   V K A+GS LV  G+T ++    +E   P +      G + 
Sbjct: 27  VRIDNRGLNDYRELSIRVNVVKTADGSSLVSLGNTKVMAGVKVEVGKP-FEDTPDEGALI 85

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------I 112
               + P ++ +        G     + EI R++ RA+R    +D  +L          +
Sbjct: 86  VNLEIAPTASPD-----IEPGPPDENAIEIARVVDRAIRHSGFLDFKSLSIVTGKHAWFL 140

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH---MEDCSNKFQLSQVLKGH--------V 161
            +D  V+  DG    A+   A  AL +       ++   N  ++ +  +           
Sbjct: 141 WVDIYVLNHDGNLVDASTIAAVAALMNTALPKVELDPAGNILKIDRSARSPLRLNTDKLP 200

Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
             I+   +  + +VD    E+   D          G++V +Q       F++D    ++
Sbjct: 201 LTITYVKIGNFLLVDPTREEEDLSDG-VYITGIAGGNVVAIQKV--TGAFTKDEINNII 256


>gi|161527941|ref|YP_001581767.1| exosome complex RNA-binding protein Rrp42 [Nitrosopumilus maritimus
           SCM1]
 gi|160339242|gb|ABX12329.1| 3' exoribonuclease [Nitrosopumilus maritimus SCM1]
          Length = 272

 Score =  132 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 92/251 (36%), Gaps = 22/251 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  ++ RE+S+       A GS  V+ GDT ++    ++   P +      G    
Sbjct: 24  RVDGRALDESREVSIETNAIPKANGSARVRLGDTEVVCGVKIQPDRP-FPDTGDKGLFIC 82

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQIIID 115
              +LP S          +G  G    E+ R++ R +R   ++D+S L        I + 
Sbjct: 83  TAELLPLSHPT-----VETGPPGPEVIELARVVDRGIRESHMIDVSQLVIEKDKSVIGVF 137

Query: 116 CD--VIQADGGTRTAAITGAWVALHDCLQH-------MEDCSNKFQLSQVLKGHVAAISC 166
            D  V+  DG    A    A  AL                     ++   +     +++ 
Sbjct: 138 ADNVVVDYDGNLFDACSYAATAALLSSKSPKWNWVDDAPALVEGEEVDVPITTIPVSVTM 197

Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           G +  + IVD +  E +++D          G+I  +Q   +   F+QD       ++   
Sbjct: 198 GKIGNHIIVDPNGDEWASMDARITITSDSDGNICALQKGGDDG-FTQDEIVQCGEISVRV 256

Query: 227 IADLIKLQKDV 237
            A + +  K  
Sbjct: 257 GAKIREKLKAA 267


>gi|297527571|ref|YP_003669595.1| 3' exoribonuclease [Staphylothermus hellenicus DSM 12710]
 gi|297256487|gb|ADI32696.1| 3' exoribonuclease [Staphylothermus hellenicus DSM 12710]
          Length = 285

 Score =  132 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 101/257 (39%), Gaps = 24/257 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ ++ R I +       AEGS  VK G+T ++T   LE   P   R    G +  
Sbjct: 28  RIDGRKLDEYRPIEVFLNPIPKAEGSAAVKLGNTFVITGVKLEIGTPYSDR-PNEGVLQV 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL---GSRQIII-- 114
               +P ++          G     + E  R+I R+LR    + L  L     +++ +  
Sbjct: 87  HAEFVPLASPT-----FEPGPPDENAIETARVIDRSLREPKAIRLEDLVVIPGKKVWLIF 141

Query: 115 -DCDVIQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
            D  +I   G      +    +AL+              +       +    L  +V  +
Sbjct: 142 NDLYLIDHYGNIIDTGMLSTMLALNMTKIPRIVSIEDENVVIDKTVKEAPLPLNLNVVTV 201

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           + G++    IVD +  E+  +D    F + ++  IV +Q    +          ++++A 
Sbjct: 202 TLGIIDDIIIVDPNIDEELVVDSRITFAIDETNRIVGIQKMGMKG-IKPKMIDQLVDIAL 260

Query: 225 DRIADLIKLQKDVISNE 241
            + ++L  L ++V++N 
Sbjct: 261 KKASELHGLLREVLNNP 277


>gi|190346269|gb|EDK38314.2| hypothetical protein PGUG_02412 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 242

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 82/238 (34%), Gaps = 22/238 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGW 58
           +R+ GR+ N++R           +  GS  V+ G+T ++       E       +     
Sbjct: 12  LRVDGRRWNELRRFECKINTHPNSSTGSSYVEQGNTKVICMVEGPSEPETRSQVDVSRAT 71

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           I     +   ST  R KR     +   R  E++  + R     V         I ++  V
Sbjct: 72  IEVNIAVASFSTIERKKRL----KNEKRIIELKATMERTFEQSVICKLYPRTVIKVNLHV 127

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +  DGG     I    +AL D    M D             +VAA++ G+    P++DL+
Sbjct: 128 LAQDGGMLATMINATTLALIDAGIAMYD-------------YVAAVAAGLHNETPLLDLN 174

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             E++ +      V+  S  +  +           D    +L +       + +L   
Sbjct: 175 TLEENDMSHLTLGVIGKSEKLAVLML---EDKMPMDRLEPVLAIGIAGSHRIRELMDQ 229


>gi|312211270|emb|CBX91355.1| similar to exosome complex exonuclease RRP41 [Leptosphaeria
           maculans]
          Length = 280

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 86/242 (35%), Gaps = 14/242 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHG 57
           +RL GR+ N++R I         A+GS  ++ G+T +L + T   +             G
Sbjct: 13  LRLDGRRWNELRRIHAQISTQAAADGSSYLEMGNTKILVSVTGPAEGRQSGQRGGQNGQG 72

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +  E      S  +R KR     +   R+ E++  +  A   V+ L       I ++  
Sbjct: 73  KVEVEINFAGFSGVDRRKR-----KSDKRTSEMEHCLRSAFEGVLLLHLYPHSTITLNIH 127

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +I  DG    A I  A +AL D    M D       +       A  +       P++DL
Sbjct: 128 IISQDGSLLAACINAATLALIDAGIPMSDYLVACTAASSASASAADNASAD---DPLLDL 184

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +  E+  +       + +S  +         +    +    ML +  +    +  +   V
Sbjct: 185 NNQEELELPFLTVATLGESDKVSVCIM---ESRVRMERLEGMLAVGIEGCKRMRGILDGV 241

Query: 238 IS 239
           + 
Sbjct: 242 LR 243


>gi|14601411|ref|NP_147948.1| exosome complex RNA-binding protein Rrp42 [Aeropyrum pernix K1]
 gi|29337018|sp|Q9YC05|ECX2_AERPE RecName: Full=Probable exosome complex exonuclease 2
 gi|5105129|dbj|BAA80443.1| exosome complex exonuclease Rrp42 homologue [Aeropyrum pernix K1]
          Length = 276

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 97/255 (38%), Gaps = 24/255 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R     R + +   + + AEGS LVK G T ++         P +      G +T 
Sbjct: 28  RPGDRDLKTPRNVKIETGIIEKAEGSALVKLGKTQVIAGVKAGVGAP-FKDTPNQGVLTV 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSAL----GSR--QII 113
               +P ++          G     + E+ R++ R+LR V  VDL +L    G +   + 
Sbjct: 87  HAEFVPLASPV-----FEPGPPDENAIELARVVDRSLREVGAVDLESLVIRPGEKVWVLW 141

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL---------SQVLKGHVAAI 164
           +D  +I  DG    A++      L        + S   ++            +K  V  +
Sbjct: 142 VDLYIIDHDGNLFDASMLATMAVLLTARLPRYEESETGEIIISKEGEGEELKVKTRVVTV 201

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           +   +  Y +VD +  E++  DV     + ++G IV +Q +    + ++     M+  + 
Sbjct: 202 TTAKIDRYIVVDPNIEEEAVSDVRLVTAVDENGRIVGLQKTGM-GSLTEADIETMIGYSL 260

Query: 225 DRIADLIKLQKDVIS 239
           +      K  ++ I 
Sbjct: 261 EASKVYFKALEEAIK 275


>gi|50307027|ref|XP_453491.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642625|emb|CAH00587.1| KLLA0D09625p [Kluyveromyces lactis]
          Length = 245

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 89/243 (36%), Gaps = 21/243 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGW 58
           +R+ GR+ N++R  + +      A +GS  ++ G+  ++T      E       NTK   
Sbjct: 12  LRVDGRRWNELRSFNCSINTHPNAADGSSYLEQGNNKIITLVAGPQEPSSRSQVNTKQAT 71

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           ++    +   +   R K    S +   R+ E Q  + R     + L       I +    
Sbjct: 72  LSVTINLTKFAKMERSK---SSHKNERRTLEWQASLVRTFEKNLMLHLYPRTSIDVQVHA 128

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +Q DGG   A + G  +AL D    M D              V+ +S G+    P++DL+
Sbjct: 129 LQLDGGILGAMLNGITLALIDAGIAMYD-------------FVSGVSVGLYDTTPLLDLN 175

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             E++ +       +  S  +  +    ++    +    +++ +       +  L    +
Sbjct: 176 SLEENAMSSVTIGTIGKSEKLSLL-MVEDKVPLDR--LESVMAIGIAGTHRIRDLMDKEL 232

Query: 239 SNE 241
              
Sbjct: 233 RKH 235


>gi|146417428|ref|XP_001484683.1| hypothetical protein PGUG_02412 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 242

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 82/238 (34%), Gaps = 22/238 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGW 58
           +R+ GR+ N++R           +  GS  V+ G+T ++       E       +     
Sbjct: 12  LRVDGRRWNELRRFECKINTHPNSLTGSSYVEQGNTKVICMVEGPLEPETRSQVDVSRAT 71

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           I     +   ST  R KR     +   R  E++  + R     V         I ++  V
Sbjct: 72  IEVNIAVASFSTIERKKRL----KNEKRIIELKATMERTFEQSVICKLYPRTVIKVNLHV 127

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +  DGG     I    +AL D    M D             +VAA++ G+    P++DL+
Sbjct: 128 LAQDGGMLATMINATTLALIDAGIAMYD-------------YVAAVAAGLHNETPLLDLN 174

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             E++ +      V+  S  +  +           D    +L +       + +L   
Sbjct: 175 TLEENDMSHLTLGVIGKSEKLAVLML---EDKMPMDRLEPVLAIGIAGSHRIRELMDQ 229


>gi|313673255|ref|YP_004051366.1| polyribonucleotide nucleotidyltransferase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940011|gb|ADR19203.1| polyribonucleotide nucleotidyltransferase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 706

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 98/249 (39%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           +R+ GR+ +++R I +   +   A GS L   G+T  L + TL  K+   + +   G   
Sbjct: 320 IRVDGRRYDEIRPIDIEVGLLPRAHGSALFTRGETQALVSTTLGTKMDSQLVDDIEGNSS 379

Query: 58  -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  A   R+ G       +  RAL  V+   +     I +  
Sbjct: 380 KRFMLHYNFPPFSVGEVGRMGAPGRREVGHG----ALAERALSFVIPDESDFPYTIRVVS 435

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++++++G +  A + G  ++L D                 +K  VA I+ G++       
Sbjct: 436 EILESNGSSSMATVCGGCLSLMDAGV-------------PVKDMVAGIAMGLIYEKGRYA 482

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S D     L  A+     ++ 
Sbjct: 483 ILSDIMGIEDHLGDMDFKVAGTKDG-ITALQMDIKIEGLSMDLVREALAAARVGRLHILS 541

Query: 233 LQKDVISNE 241
             ++V+++ 
Sbjct: 542 KMQEVLASP 550



 Score = 99.0 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 82/244 (33%), Gaps = 37/244 (15%)

Query: 7   QENQMR------EISLTRRV-SKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTK 55
           +  ++R       I L     +K   GS   K G+T +L TA     + E +  +     
Sbjct: 6   KSYEIRLGSNAEPIILETGWKAKQTNGSIWAKHGETVVLVTAVMSKKVPEDIDFFPLTVN 65

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +       G +P   G  +KRE+   +   +   I R+I R LR +         QI+  
Sbjct: 66  YIEKFYSVGKIP---GGFLKRES---KPSDKETLIARLIDRPLRPIFPDGFRNEVQIVAT 119

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
                        +I  A  AL                     G V A+  G L G  I+
Sbjct: 120 VVSSDQKNSPDVLSINAASAAL-------------MISDIPFNGPVGAVRVGKLNGEYII 166

Query: 176 DLDYG-EDSTIDVDANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D    D  +    N V+      IV V+   +    S++            I ++I +
Sbjct: 167 NPDAELFDQLV---MNIVLAGTEDAIVMVEAGLKN--VSEEEVVEAFEKGHQAIREIIAV 221

Query: 234 QKDV 237
           QK +
Sbjct: 222 QKKM 225


>gi|325185608|emb|CCA20090.1| exosome complex exonuclease MTR3like protein putativ [Albugo
           laibachii Nc14]
          Length = 251

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 86/249 (34%), Gaps = 29/249 (11%)

Query: 1   MRLSGRQE--NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHG 57
           +R    +   +Q+R   +   V   A GS  V+   T ++         P   R   + G
Sbjct: 21  LRADQTRSSMDQIRATYMQVGVIHNASGSAYVELQGTKVICAVYGPRNNPRGRRKFHEGG 80

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +  +    P +  NR +       Q     ++ +++ +AL   + L  L    +     
Sbjct: 81  QLICDVKFAPFAERNRTRNAG----QDPDEIDLSQIVTKALLPAIFLDKLPKCVVSCFVV 136

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           ++Q+DG     AI  A +AL D    M D              V A + G++    +VDL
Sbjct: 137 ILQSDGSELATAIMCASLALADAAIEMRDL-------------VTACNAGIVDDKLLVDL 183

Query: 178 DYGEDSTIDV-DANFVMT--DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD-LIKL 233
              E+           +        V  QG+      +      M+++     +  L + 
Sbjct: 184 CTSEERMSQGNTMLAFLPSLQKSTFVMQQGT-----MTHAQVEEMIDVCSIACSSVLNES 238

Query: 234 QKDVISNEV 242
            K  ++ +V
Sbjct: 239 MKVALTQKV 247


>gi|15241441|ref|NP_196962.1| polyribonucleotide nucleotidyltransferase, putative [Arabidopsis
           thaliana]
 gi|4971998|emb|CAB43864.1| polynucleotide phosphorylase [Arabidopsis thaliana]
 gi|4972000|emb|CAB43865.1| polynucleotide phosphorylase [Arabidopsis thaliana]
 gi|7573307|emb|CAB87625.1| polynucleotide phosphorylase [Arabidopsis thaliana]
 gi|332004667|gb|AED92050.1| polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana]
          Length = 991

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 88/245 (35%), Gaps = 11/245 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
            R+ GR  +++R I           GS L   GDT +L T TL           +     
Sbjct: 363 FRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPAEAQSLDSLVGPPK 422

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P  T    KR  ++ R+ G       +  +AL +V+         I I+ 
Sbjct: 423 KRFMLHYSFPPYCTNEVGKRGGLNRREVGHGT----LAEKALLAVLPPEEAFPYTIRINS 478

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ +DG T  A++ G  +AL D    +        +   L   V   S  +     + D
Sbjct: 479 EVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVG--LITDVDPSSGEIKDYRIVTD 536

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G +  +Q   + A    D     L  A++    ++   + 
Sbjct: 537 ILGLEDHLGDMDFKIAGTRDG-VTAIQLDIKPAGIPLDIVCESLENAREARLQILDHMER 595

Query: 237 VISNE 241
            I++ 
Sbjct: 596 NINSP 600



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 77/222 (34%), Gaps = 36/222 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWITAEYGMLPRS 69
           R +S     ++++A GS ++   +T +L+T T  +   P          +T +Y     +
Sbjct: 62  RVVSFETGKIARFANGSVVLGMDETKVLSTVTCAKTDSPR-----DFLPLTVDYQEKQYA 116

Query: 70  TG----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
            G      ++RE   G    R     R+I R +R +         QI+    V+ +DG  
Sbjct: 117 QGLIPNTYMRRE---GAPKERELLCGRLIDRPIRPLFPTGFYHEVQIMAS--VLSSDG-- 169

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
                        D L      +          G +  I  G +CG  +V+    E    
Sbjct: 170 ---------KQDPDILAANASSAALMLSDVPWGGPIGVIRIGRICGQFVVNPTMDE--LS 218

Query: 186 DVDANFVMT---DSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
             D N +     D   +++VQ        S+    A L LA 
Sbjct: 219 SSDLNLIYACTRDKTMMIDVQ----SREISEKDLAAALRLAH 256


>gi|225848390|ref|YP_002728553.1| polynucleotide phosphorylase/polyadenylase [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|257096710|sp|C1DTW6|PNP_SULAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225644547|gb|ACN99597.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 707

 Score =  132 bits (332), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 90/250 (36%), Gaps = 27/250 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           +R+ GR+  ++R I +   V     GS +   G T    T TL       I  +      
Sbjct: 313 IRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSLSEGQIEESIEAGEV 372

Query: 58  --WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P STG      A S R+ G       +  RAL  ++         I + 
Sbjct: 373 MKRFMLHYNFPPFSTGEAKPPRATSRREIGHG----NLAERALEPLIPPEEEFPYAIRVV 428

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            D+++++G T  A + G  +AL D    M             K HVA I+ G++      
Sbjct: 429 SDILESNGSTSMATVCGGSLALFDAGVPM-------------KKHVAGIAMGLIKAEDKF 475

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G +  +Q   +    +++     L  A+D    ++
Sbjct: 476 VILSDILGDEDHLGDMDFKVAGTRDG-VTSIQMDIKVKGLTKEILEKALQQARDGRNYIL 534

Query: 232 KLQKDVISNE 241
            L    I   
Sbjct: 535 DLMYQAIPEP 544



 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 86/231 (37%), Gaps = 31/231 (13%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLP 67
              +      K A G+ +V+ GDT +L  A + E+    +       ++      YG +P
Sbjct: 16  PFIIETGYFAKQANGAVIVRQGDTAVLVAAVMSEEPQADIDFLPLTVEYREKYYAYGKIP 75

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
              G  VKRE   G+   R   + R I R +R +          I+I    + AD     
Sbjct: 76  ---GGFVKRE---GKPTDREILVARNIDRPIRPLFPKGFYND--IVITAYTLSADDKYDP 127

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
               I GA  ALH                   +G +A +    + G  IV+  Y + +  
Sbjct: 128 DVLGIVGASAALH-------------ISDIPFEGPIAGVRVCRVNGEFIVNPTYQQKAQA 174

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D++   V      IV V+G A+     ++     +      I  LI+LQ++
Sbjct: 175 DIEI-VVAGSKDAIVMVEGGAKEVP--EEDILEAMMFGHQEIKKLIELQEE 222


>gi|289622237|emb|CBI51415.1| unnamed protein product [Sordaria macrospora]
          Length = 273

 Score =  132 bits (332), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 89/251 (35%), Gaps = 22/251 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMW--------- 50
           +R+ GR+ N++R I    R    A+GS  ++ G T ++       E  P           
Sbjct: 13  LRVDGRRWNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVVNGPSEPGPRRGATSGGGGG 72

Query: 51  IRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110
              +K+  +     +   S+ +R +R    GR      E+Q  I +AL + +        
Sbjct: 73  GGQSKNAEVAVNIVIAGFSSVDRKRR----GRGDKHILELQSTISQALAASLHTHLFPHS 128

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
            I I   V+  DG    A I  A +A  D    M D            G  +  +     
Sbjct: 129 TINISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTA-----GSTSTYAANDEG 183

Query: 171 GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
             P++D+++ E+  +       + DS  +  +   +            ML +  D    +
Sbjct: 184 ADPLLDMNHQEEQELPGLTVATLGDSDRVAVLVCESRVQV---SRLEGMLAVGVDGCKQV 240

Query: 231 IKLQKDVISNE 241
            ++   V+  +
Sbjct: 241 REILDRVVREK 251


>gi|322703951|gb|EFY95552.1| exosome complex exonuclease RRP41 [Metarhizium anisopliae ARSEF 23]
          Length = 273

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 85/240 (35%), Gaps = 22/240 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-------- 52
           +R+ GR+ N++R +    R    A+GS   + G T ++   T   +              
Sbjct: 13  LRVDGRRWNELRRLHAQIRTQDAADGSSYFEMGHTKVMCVVTGPSEQQQAQAQAQRRGGQ 72

Query: 53  --NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110
                   I     +   S+ +R KR     R   R+QEI+  I +AL S V        
Sbjct: 73  APGRDAASIIVNVVIAGFSSVDRKKR----ARSDKRTQEIEITIAKALSSTVHTHLFPHS 128

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
            I +   V+  DG    A I  A +A+ D    M D            G  ++ + G   
Sbjct: 129 SITVSLHVLSQDGSLLAALINAATLAVIDAGIPMTDYIAACTA-----GSTSSYAAGDDS 183

Query: 171 GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
             P++DL+  E+  +       + DS  +V +   +            ML +  D    +
Sbjct: 184 ADPLLDLNNQEEQELPFLTVASLGDSDRVVALVCESRVQV---SRLEGMLVVGLDGCKQV 240


>gi|302882007|ref|XP_003039914.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI
           77-13-4]
 gi|256720781|gb|EEU34201.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI
           77-13-4]
          Length = 268

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 88/246 (35%), Gaps = 17/246 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIR----NTK 55
           +R+ GR+ N++R ++   R    A+GS  ++ G T ++   T   E+     R       
Sbjct: 13  LRVDGRRWNELRRLNAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQGQQQRRVQTAQRD 72

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
              I         S+ +R KR    GR   R+QEI+  I  A  S +         I I 
Sbjct: 73  VAAINVNVVTAGFSSVDRKKR----GRNDKRTQEIEVTIANAFASNLHTHLFPHSSITIS 128

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
             V+  DG    A +    +AL D    M D            G  +  + G     P++
Sbjct: 129 LHVLSQDGSLLAALLNATTLALIDAGIPMTDYIAACTA-----GSTSTYAAGDDSADPLL 183

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DL+  E+  +       +  S  +  +   +            ML +  D    + +   
Sbjct: 184 DLNNQEEQELPFLTVATLGGSDRVAALVCESRVQV---SRLEGMLVVGVDGCKQVKQFLD 240

Query: 236 DVISNE 241
            V+ ++
Sbjct: 241 QVVKDK 246


>gi|291279901|ref|YP_003496736.1| polyribonucleotide nucleotidyltransferase [Deferribacter
           desulfuricans SSM1]
 gi|290754603|dbj|BAI80980.1| polyribonucleotide nucleotidyltransferase [Deferribacter
           desulfuricans SSM1]
          Length = 700

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 95/245 (38%), Gaps = 19/245 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR   ++R I +   +   A GS L   G+T  L TATL  K        +    + 
Sbjct: 321 RVDGRTYTEIRPIDIEVDLLPCAHGSALFTRGETQALVTATLGTKFDSQLLDDLEGETYK 380

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      A   R+ G       +  RAL S++         I +  +
Sbjct: 381 RFMLHYNFPPFSVGEIGFLRAPGRREIGHGF----LAERALASMLPGEDEFPYTIRVVSE 436

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176
           +++++G +  A + G  +AL D    ++D      +  + +G            Y I+ D
Sbjct: 437 ILESNGSSSMATVCGGSLALMDAGVPIKDVVAGIAMGLIYEGD---------DNYVILSD 487

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T++G I  +Q   +     ++     L  AK+    +++  K 
Sbjct: 488 IMGIEDHLGDMDFKVTGTETG-ITALQMDIKIKGLKREILEKALAQAKEGRLFILQKMKA 546

Query: 237 VISNE 241
           V++  
Sbjct: 547 VLAKP 551



 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 84/232 (36%), Gaps = 31/232 (13%)

Query: 13  EISLTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
            I       +K A GS  +K G + +L TA       E +  +     +       G +P
Sbjct: 18  PIIFETGWKAKQANGSIWIKQGGSVVLVTAVASKEASENLDFFPLTVNYIEKFYAVGKIP 77

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   G+   +   I R+I R +R +         QII    V+ +D     
Sbjct: 78  ---GGFIKRE---GKPSDKETLISRLIDRPIRPLFPEGFRNETQIIAT--VVSSD----- 124

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD-YGEDSTID 186
                  V   D L      +         +G + A+  G + G  +++      D   D
Sbjct: 125 ------QVNSTDILALNAASAALMISDIPFEGPIGAVRVGKINGEYVINPSAAIFD---D 175

Query: 187 VDANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           ++ N V+      IV V+   +    S++     L    + I  L+++QK +
Sbjct: 176 LEMNIVVAGTEDSIVMVEAGMKNC--SEEDVVNALEFGHEAIKKLVEVQKRM 225


>gi|241663489|ref|YP_002981849.1| polynucleotide phosphorylase/polyadenylase [Ralstonia pickettii
           12D]
 gi|240865516|gb|ACS63177.1| Polyribonucleotide nucleotidyltransferase [Ralstonia pickettii 12D]
          Length = 724

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 98/243 (40%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L  ATL    +E++   ++     
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL  V+      +  I +  +
Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREVGHG----RLAKRALIPVLPKDDEFAYTIRLVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    ++       +  +L+ +  A+         + D+
Sbjct: 433 ITESNGSSSMASVCGGSLALMDAGVPLKAHVAGVAMGLILEDNKFAV---------LTDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     TD+G I  +Q   +    +++     L  AK+    ++   +  
Sbjct: 484 LGDEDHLGDMDFKVAGTDAG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMRAA 542

Query: 238 ISN 240
           +  
Sbjct: 543 MGG 545



 Score = 74.7 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 80/232 (34%), Gaps = 34/232 (14%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ +    +++ A G+ L+   DT +L T       +     +     +   T   G +P
Sbjct: 17  KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLTVDYLEKTYAAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR         R+I R LR +         Q++I   V+        
Sbjct: 77  ---GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVI--HVL-------- 120

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            ++     A  D    +   +          G V A   G   G  +++ +  + +  D+
Sbjct: 121 -SMNPEVPA--DIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 177

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232
           D     T+   ++     +E    S++            + +A + I +L++
Sbjct: 178 DLVVAGTERAVLMV---ESEAQQLSEEVMLGAVVYGHEQMQIAINAIHELVR 226


>gi|307178493|gb|EFN67182.1| Exosome complex exonuclease MTR3 [Camponotus floridanus]
          Length = 282

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 88/243 (36%), Gaps = 30/243 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  N++R I L   +   A+GS  ++ G+T ++ +     +VP        G +  
Sbjct: 37  RHDGRSNNELRNIFLKTGIISQAKGSAYIEMGNTKIICSVFDPREVPNKTGYCVQGELFC 96

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           E+   P S   R   +     Q    +E   ++ RAL   V L    + Q+ +   V+  
Sbjct: 97  EFKFAPFSHHKRKMHQ-----QDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVLDN 151

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
            G    AAI  A +AL +    M              G V A + G+     +VD    E
Sbjct: 152 GGSALAAAIMAASLALANAGVPMF-------------GLVTASTVGIYDHTYLVDPTDTE 198

Query: 182 DSTIDVDAN------------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
           ++     +               +   G I E+       T +  H   +++ A   I  
Sbjct: 199 ETFCCTKSVPGTVHNHGIIIQAALPQHGQISEMFVVGSVDTDTIVHSMDLISEAHKDICP 258

Query: 230 LIK 232
           L++
Sbjct: 259 LLE 261


>gi|297811589|ref|XP_002873678.1| hypothetical protein ARALYDRAFT_488299 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297319515|gb|EFH49937.1| hypothetical protein ARALYDRAFT_488299 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 992

 Score =  130 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 89/245 (36%), Gaps = 11/245 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
            R+ GR  +++R I           GS L   GDT +L T TL           +     
Sbjct: 363 FRVDGRHLDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPGEAQSLDSLVGPPK 422

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P  T    KR  ++ R+ G       +  +AL +V+         + I+ 
Sbjct: 423 KRFMLHYSFPPYCTNEVGKRGGLNRREVGHGT----LAEKALLAVLPPEEAFPYTVRINS 478

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ +DG T  A++ G  +AL D    +        +   L   V   S  +     + D
Sbjct: 479 EVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVG--LITDVDPSSGEIKDYRIVTD 536

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T +G +  +Q   + A    D     L  A++    ++   + 
Sbjct: 537 ILGLEDHLGDMDFKIAGTRNG-VTAIQLDIKPAGIPLDIVCESLENAREARLQILDHMER 595

Query: 237 VISNE 241
            I++ 
Sbjct: 596 NINSP 600



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 79/229 (34%), Gaps = 37/229 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWITAEYGMLPRS 69
           R +S     ++++A GS ++    T +L+T T  +   P          +T +Y     +
Sbjct: 62  RVVSFETGKIARFANGSVVLGMDQTKVLSTVTCAKTDSPR-----DFLPLTVDYQEKQYA 116

Query: 70  TG----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
            G      ++RE   G    R     R+I R +R +         QI+    V+ +DG  
Sbjct: 117 QGLIPNTYMRRE---GAPKERELLCGRLIDRPIRPLFPSGFYHEVQIMAS--VLSSDG-- 169

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
                        D L      +          G +  I  G +CG  +V+    E    
Sbjct: 170 ---------KQDPDILAANASSAALMLSDVPWGGPIGVIRIGRICGQFVVNPTMDE--LS 218

Query: 186 DVDANFVMT---DSGHIVEVQGSAERATFSQDHFFAMLNLAK-DRIADL 230
             D N +     D   +++VQ        S+    A L LA  + I  L
Sbjct: 219 SSDLNLIYACTRDKTMMIDVQ----SREISEKDLAAALRLAHPEAIKYL 263


>gi|312127889|ref|YP_003992763.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777908|gb|ADQ07394.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 701

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 95/249 (38%), Gaps = 27/249 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R  GR+ +++R +     +     GS L K G T +LT ATL  K  M     +   +  
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG          R+ G       +  RAL  V+         I +  +
Sbjct: 373 RYMHHYNFPPFSTGESKPVRGPGRREIGHG----ALAERALEPVIPSEDEFPYTIRLVSE 428

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           V+ ++G T  A++ G+ +AL D                 +K  VA IS G++    G  I
Sbjct: 429 VLTSNGSTSQASVCGSTLALMDAGV-------------PIKAPVAGISIGLITKDDGSFI 475

Query: 175 V--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +  D+   ED   D+D     T  G I  +Q   +    +++     L  A++    ++ 
Sbjct: 476 LLTDIQGIEDFFGDMDFKVAGTREG-ITAIQLDIKIHGLTREIIEKALYQAREARLKILD 534

Query: 233 LQKDVISNE 241
             + VI   
Sbjct: 535 FMQTVIDKP 543



 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 81/226 (35%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           RE+S      +  A G+ L ++GDT +L TA       + +  +     +       G +
Sbjct: 13  RELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPRKGINFFPLTVDYEERLYSVGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R +R +          +I     +  D    
Sbjct: 73  P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ VAL                    +G   ++  G + G  +++    E     
Sbjct: 127 VLAMLGSSVALS-------------ISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSK 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A+     +D     +  A++ I  +++
Sbjct: 174 LHLVVSGTKD-RVMMIEAGAKEVP--EDIMLEAIMTAQEEIKKIVE 216


>gi|312876944|ref|ZP_07736919.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796259|gb|EFR12613.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 701

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/249 (23%), Positives = 95/249 (38%), Gaps = 27/249 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R  GR+ +++R +     +     GS L K G T +LT ATL  K  M     +   +  
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG          R+ G       +  RAL  V+         I +  +
Sbjct: 373 RYMHHYNFPPFSTGESKPVRGPGRREIGHG----ALAERALEPVIPSEDEFPYTIRLVSE 428

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           V+ ++G T  A++ G+ +AL D                 +K  VA IS G++    G  I
Sbjct: 429 VLTSNGSTSQASVCGSTLALMDAGV-------------PIKAPVAGISIGLITKDDGSFI 475

Query: 175 V--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +  D+   ED   D+D     T  G I  +Q   +    +++     L  A++    ++ 
Sbjct: 476 LLTDIQGIEDFFGDMDFKVAGTREG-ITAIQLDIKIHGLTKEIIEKALYQAREARLKILD 534

Query: 233 LQKDVISNE 241
             K VI   
Sbjct: 535 FMKTVIDKP 543



 Score = 88.6 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           RE+S      +  A G+ L ++GDT +L TA       E +  +     +       G +
Sbjct: 13  RELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERLYSVGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R +R +          +I     +  D    
Sbjct: 73  P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ VAL                    +G   ++  G + G  +++    E     
Sbjct: 127 VLAMLGSSVALS-------------ISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSK 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A+     +D     +  A++ I  +++
Sbjct: 174 LHLVVSGTKD-RVMMIEAGAKEVP--EDIMLEAIMTAQEEIKKIVE 216


>gi|317121863|ref|YP_004101866.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591843|gb|ADU51139.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
           marianensis DSM 12885]
          Length = 752

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 96/250 (38%), Gaps = 27/250 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-----K 55
           +R  GR+ +++R I +   +   A GS L + G T +LT A+L       + +T     +
Sbjct: 320 IRPDGRRPDEIRPIHVEVGLLPRAHGSGLFQRGQTQVLTVASLGAPGDRQMLDTLGQIEE 379

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P STG      A S R+ G       +  RAL  V+         I + 
Sbjct: 380 FKRYMHHYNFPPYSTGEVAPLRAPSRREIGHG----ALAERALVPVLPDELEFPYTIRLV 435

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V+ ++G T  A+  G+ +AL D                 +K  VA ++ G++      
Sbjct: 436 SEVLSSNGSTSMASTCGSTLALMDAGV-------------PIKAPVAGVAMGLIKEGDRF 482

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G +  +Q   + A   +      L  A+     ++
Sbjct: 483 AVLTDIQGIEDHLGDMDFKVAGTREG-VTAIQMDIKIAGVDRAVLETALEQARAGRLFIL 541

Query: 232 KLQKDVISNE 241
           +   +VI   
Sbjct: 542 EKMLEVIDKP 551



 Score = 95.2 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 85/234 (36%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    +++ A GS LV++GDT +L TAT      + +  +             G +
Sbjct: 21  RPLIVEIGQLAQQANGSALVRYGDTVILATATASKEPRQGIDFFPLRVDWEERLYAAGRI 80

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+  +RE   G+   R+    R+  R LR +         QII+       D    
Sbjct: 81  P---GSFFRRE---GKPSERAILSGRLTDRPLRPLFPKGYRNDVQIIVTTLSYDDDCSPE 134

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            A I GA VAL                     G V A+  G+L G  +++    +     
Sbjct: 135 IAGIIGASVAL-------------GISDIPWNGPVGAVEVGLLDGELVINPTAAQREHSR 181

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +D     T    I  V+  A      +      +    + I  L++ Q+ +I+ 
Sbjct: 182 LDLTVAGTKDA-INMVEAGAHEVP--EATILDAIFRGHEEIKKLVEFQEAIIAQ 232


>gi|167393565|ref|XP_001740629.1| exosome complex exonuclease RRP41 [Entamoeba dispar SAW760]
 gi|165895202|gb|EDR22949.1| exosome complex exonuclease RRP41, putative [Entamoeba dispar
           SAW760]
          Length = 238

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 85/232 (36%), Gaps = 27/232 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR+  +MR+  +       ++GS  V+ G+T +        +     RN +   +  
Sbjct: 10  RLDGRRTTEMRKCEMEINFLNTSDGSARVRMGNTIVEAVVFGPLEGRR--RNREGAELMV 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            Y     +T  R +RE +         E   ++ +    V+    L    I +   ++Q 
Sbjct: 68  SYSQATFAT--RKRREQM---HDRTMIETAELLKQMYEQVIITKLLPETMIDLRVQIMQD 122

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DG    A I    +AL D    M D              V+A   G + G  +VD++  E
Sbjct: 123 DGSVTAAVINACTLALIDAGIPMIDI-------------VSAAEGGYIDGKMVVDMNKDE 169

Query: 182 DSTIDVDANF---VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           ++   V  N    +M  SG +  +Q               +L++ ++    +
Sbjct: 170 ENVGTV-FNVHTAIMQKSGAVALLQ---TEGKMPLQRLGDLLSIVEEGAKTI 217


>gi|310798773|gb|EFQ33666.1| 3' exoribonuclease family protein [Glomerella graminicola M1.001]
          Length = 266

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 91/244 (37%), Gaps = 15/244 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW---IRNTKHG 57
           +R+ GR+ N++R +    R  + A+GS  ++ G T ++   T   +          TK  
Sbjct: 13  LRVDGRRWNELRRLHAQIRTQEAADGSSYLEMGHTKVMCVVTGPTEPQRRGGAGGQTKEA 72

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +T    +   S+ +R KR    GR   R+QE++  I +A+ + +         I I   
Sbjct: 73  AVTVNLVVAGFSSVDRRKR----GRNDKRTQELEATIAKAVSANLHTHLFPHSSISISLH 128

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+  DG    A +  + +AL D    M D            G  +  +       P++DL
Sbjct: 129 VLSQDGSLLAALLNASTLALIDAGIPMTDYIAACTA-----GSTSTYAAADDGADPLLDL 183

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +  E+  +       +  +  +  +   +            ML +  D    + +    V
Sbjct: 184 NTQEEQELPYMTVGTLGLTDRVAVLVCESRVQV---SRLEGMLAVGVDGCKQVRQFMDRV 240

Query: 238 ISNE 241
           +  +
Sbjct: 241 VKEK 244


>gi|309781847|ref|ZP_07676580.1| polyribonucleotide nucleotidyltransferase [Ralstonia sp. 5_7_47FAA]
 gi|308919488|gb|EFP65152.1| polyribonucleotide nucleotidyltransferase [Ralstonia sp. 5_7_47FAA]
          Length = 722

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 98/243 (40%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L  ATL    +E++   ++     
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL  V+      +  I +  +
Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREVGHG----RLAKRALIPVLPKDDEFAYTIRLVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    ++       +  +L+ +  A+         + D+
Sbjct: 431 ITESNGSSSMASVCGGSLALMDAGVPLKAHVAGVAMGLILEDNKFAV---------LTDI 481

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     TD+G I  +Q   +    +++     L  AK+    ++   +  
Sbjct: 482 LGDEDHLGDMDFKVAGTDAG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQAA 540

Query: 238 ISN 240
           +  
Sbjct: 541 MGG 543



 Score = 74.7 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 80/232 (34%), Gaps = 34/232 (14%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ +    +++ A G+ L+   DT +L T       +     +     +   T   G +P
Sbjct: 15  KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLTVDYLEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR         R+I R LR +         Q++I   V+        
Sbjct: 75  ---GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVI--HVL-------- 118

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            ++     A  D    +   +          G V A   G   G  +++ +  + +  D+
Sbjct: 119 -SMNPEVPA--DIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232
           D     T+   ++     +E    S++            + +A + I +L++
Sbjct: 176 DLVVAGTERAVLMV---ESEAQQLSEEVMLGAVVYGHEQMQIAINAIHELVR 224


>gi|254195065|ref|ZP_04901494.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei S13]
 gi|169651813|gb|EDS84506.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei S13]
          Length = 713

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSADEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D   V T  G +  +Q   +    +++     L  AK+    ++   KD 
Sbjct: 489 LGDEDHLGDMDFKVVGTADG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDA 547

Query: 238 ISN 240
           ++ 
Sbjct: 548 VAG 550



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 76/234 (32%), Gaps = 38/234 (16%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    +++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 17  KVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR         R+I R LR +         Q++I    +  +     
Sbjct: 77  ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRL 177

Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++ V+  A++           F  +     ++     I +L++
Sbjct: 178 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 226


>gi|154346012|ref|XP_001568943.1| exosome complex exonuclease RRP41 [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134066285|emb|CAM44076.1| putative exosome complex exonuclease rrp41 [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 246

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 97/236 (41%), Gaps = 25/236 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI- 59
           +RL GR+  + R + +        +GSC +  G + +  +     +  +  +  KH  + 
Sbjct: 13  LRLDGRRPLEARRMDIVFGTLSACDGSCDITVGQSKVCASIFGPRE-SLHKQEAKHDKVL 71

Query: 60  -TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
            T E  +   +  +R        R+   S++I   + +  RSV+ LS   + QI I  +V
Sbjct: 72  VTCEVAVAAFAGESRR----NPQRRSKLSEDIDAAVVQVARSVILLSQYPNSQIHIYIEV 127

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +Q DG  + A I  A +AL D    M D              V  IS G+L  + ++DL 
Sbjct: 128 LQQDGNEKVACINAACLALVDANVAMRDV-------------VCCISVGLLDEHMLIDLA 174

Query: 179 YGE--DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
             E       + A F   D+ +I+ ++ ++       D    +L  A+    +L +
Sbjct: 175 NDELRSQCPVIVAAFTGHDTQNIIWLETTSR---LPPDSVARLLKCAEQGAQELFE 227


>gi|50288675|ref|XP_446767.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526075|emb|CAG59694.1| unnamed protein product [Candida glabrata]
          Length = 246

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 90/238 (37%), Gaps = 21/238 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGW 58
           +RL GR+ N++R          +A +GS  ++ G+  ++T     ++  +  + + +   
Sbjct: 12  LRLDGRRWNELRRFESAINTHPHAADGSSYLEQGNNKVITLVKGPKEPTLKSQMDIQKAI 71

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +     +   S   R K    S +   R  E+Q  + R     V L       I I+  V
Sbjct: 72  LKVTVNITKFSKFERSK---SSHKNERRVLEMQTALVRTFEKNVMLHVYPRTLIDIEIHV 128

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +Q DGG     + G  +AL D    M D             +V+ IS G+    P++D++
Sbjct: 129 LQQDGGIMGTLLNGISLALIDAGIAMYD-------------YVSGISVGLYDTTPLLDIN 175

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             E++ +      V+  S  +  +Q          D    +L +       +  L + 
Sbjct: 176 SLEENAMSAVTLGVVGKSEKLSLLQI---EDKIPLDRIENVLAIGIAGAHRIRDLMEQ 230


>gi|260893502|ref|YP_003239599.1| polyribonucleotide nucleotidyltransferase [Ammonifex degensii KC4]
 gi|260865643|gb|ACX52749.1| polyribonucleotide nucleotidyltransferase [Ammonifex degensii KC4]
          Length = 736

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 99/247 (40%), Gaps = 28/247 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR    +R +S+   +     GS L   G T +L+  T     +E++   +   + 
Sbjct: 325 IRADGRGFKDIRPLSVEVGLLPRTHGSALFTRGQTQVLSVVTLGAVGDEQILDDLDLEES 384

Query: 57  GWITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                 Y   P STG  R  R       G R      ++ RAL +V+         I + 
Sbjct: 385 KRFMHHYNFPPFSTGEVRPIRS-----PGRREIGHGALVERALEAVIPDEDAFPYTIRVV 439

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            +V++++G T  A++  + +AL D                 +K  VA I+ G++      
Sbjct: 440 SEVLESNGSTSMASVCASSLALMDAGV-------------PIKAPVAGIAMGLIKEEDEF 486

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T++G I  +Q   + A  +++     L  A++    ++
Sbjct: 487 IVLTDIQGLEDHLGDMDFKVAGTEAG-ITALQMDIKIAGVTKEILATALAQAREARLYIL 545

Query: 232 KLQKDVI 238
           ++ +  +
Sbjct: 546 EVMRRAL 552



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 85/237 (35%), Gaps = 31/237 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + L    V++ A  + L K+GDT +L TAT      E +  +     +       G +
Sbjct: 16  RPLVLEVGRVARQASSAVLAKYGDTVVLVTATMAPEPREGIDFFPLLVDYEERHYAVGKI 75

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  ++RE   G+ G ++    R+I R++R +          ++     +  +    
Sbjct: 76  P---GGFLRRE---GKPGEKAVLSARLIDRSIRPLFPKKMRNDVHVVATILSVDQNCAPE 129

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                     G +  +  G++ G  +++    ++    
Sbjct: 130 ITAMIGASAAL-------------TLSEIPFAGPIGGVIVGLVDGELVLNPTVEQEEKSL 176

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK----LQKDVIS 239
           +      T    +V V+  A      +D     +      + ++      L+++ ++
Sbjct: 177 LHLVVAGTKEA-VVMVECGAREVP--EDKVVEAIEFGHQTVKEIAAFIETLREEALA 230


>gi|118576718|ref|YP_876461.1| RNase PH-related exoribonuclease [Cenarchaeum symbiosum A]
 gi|118195239|gb|ABK78157.1| RNase PH-related exoribonuclease [Cenarchaeum symbiosum A]
          Length = 270

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 93/250 (37%), Gaps = 21/250 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ ++ R++++       AEGS  V  G T ++T   ++   P +      G    
Sbjct: 24  RIDGRRLDEPRKLTIETNAIPKAEGSARVHLGRTDVVTGVKVQPDRP-FPDVGDRGIFIC 82

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQIIID 115
              +LP +  +       +G       E+ R++ R +R   +VDLS L        I I 
Sbjct: 83  TAEILPLAHPD-----VETGPPSPAVIELARVVDRGIRESGMVDLSKLVLLKDKSVIGIF 137

Query: 116 CD--VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL------SQVLKGHVAAISCG 167
            D  VI  DG    A    A  A+        +  ++  +         +     +++  
Sbjct: 138 ADSSVIDVDGNLFDACSYAATAAILTAKLPKWEIQDEAPVRIEGETPVPVTTIPVSVTMA 197

Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
            + G+ +VD +  E + +D          G+I  +Q       F+         ++    
Sbjct: 198 KINGHILVDPNQDEWAVMDARITITTNSDGNICALQKGGNSG-FTHAELVKCGEISVRVG 256

Query: 228 ADLIKLQKDV 237
           AD+ ++ K  
Sbjct: 257 ADIREIIKRA 266


>gi|156845783|ref|XP_001645781.1| hypothetical protein Kpol_1010p39 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116449|gb|EDO17923.1| hypothetical protein Kpol_1010p39 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 246

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 92/243 (37%), Gaps = 21/243 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGW 58
           +RL GR+ N++R    +     +A +GS  ++ G+  ++T      E +     +     
Sbjct: 12  LRLDGRRWNELRRFECSINTHAHASDGSSYLEQGNNKIVTLVKGPQEPILRSQLDATKAS 71

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +     +   S   R K    S +   R  E+Q  + R     V L       I I+  V
Sbjct: 72  LNITVNITKFSKMERSK---SSHKNERRVLEMQTALVRTFEKNVMLHLYPRTLIDIEIHV 128

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +Q DGG   + I    +AL D    M D             +V+AIS G+    P++D++
Sbjct: 129 LQQDGGILGSLINSITLALIDSGIAMYD-------------YVSAISIGLYDTTPLLDVN 175

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             E++ +      V+  S  +  +   +       D   ++L +       + +L  + +
Sbjct: 176 TLEENAMSTVTLGVIGKSEKLSLL---SVEDKIPLDRLESVLAIGIAGAHRVRELMDNEL 232

Query: 239 SNE 241
              
Sbjct: 233 RKH 235


>gi|17546786|ref|NP_520188.1| polynucleotide phosphorylase/polyadenylase [Ralstonia solanacearum
           GMI1000]
 gi|81504298|sp|Q8XXP6|PNP_RALSO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|17429086|emb|CAD15774.1| probable polyribonucleotide nucleotidyltransferase protein
           [Ralstonia solanacearum GMI1000]
          Length = 717

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 99/242 (40%), Gaps = 18/242 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L  ATL    +E++   ++     
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL  V+      +  I +  +
Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPKEDEFAYTIRLVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    ++       +  +L+G+  A+         + D+
Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAV---------LTDI 481

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     TD+G I  +Q   +    +++     L  AK+    ++   +  
Sbjct: 482 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQAA 540

Query: 238 IS 239
           + 
Sbjct: 541 MG 542



 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 80/232 (34%), Gaps = 34/232 (14%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ +    +++ A G+ L+   DT +L T       +     +     +   T   G +P
Sbjct: 15  KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNAKPGQDFFPLTVDYIEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR         R+I R LR +         Q++I   V+        
Sbjct: 75  ---GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVI--HVL-------- 118

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            +I     A  D    +   +          G V A   G   G  +++ +  + +  D+
Sbjct: 119 -SINPEVPA--DIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232
           D     T+   ++     +E    S++            + +A + I DL++
Sbjct: 176 DLVVAGTERAVLMV---ESEANQLSEEVMLGAVVYGHEQMQIAINAIHDLVR 224


>gi|312134904|ref|YP_004002242.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           owensensis OL]
 gi|311774955|gb|ADQ04442.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           owensensis OL]
          Length = 701

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 93/249 (37%), Gaps = 27/249 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R  GR+ +++R +     +     GS L K G T +LT ATL  K  M     +   +  
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG          R+ G       +  RAL  V+         I +  +
Sbjct: 373 RYMHHYNFPPFSTGESKPIRGPGRREIGHG----ALAERALEPVIPSEDEFPYTIRLVSE 428

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           V+ ++G T  A++ G+ +AL D                 +K  VA IS G++        
Sbjct: 429 VLTSNGSTSQASVCGSTLALMDAGV-------------PIKAPVAGISIGLITKEDGSFI 475

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    +++     L  AK+    ++ 
Sbjct: 476 LLTDIQGIEDFFGDMDFKVAGTREG-ITAIQLDIKIHGLTREIIEKALYQAKEARLKILD 534

Query: 233 LQKDVISNE 241
             + +I   
Sbjct: 535 FMQTIIDKP 543



 Score = 88.6 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           RE+S      +  A G+ L ++GDT +L TA       E +  +     +       G +
Sbjct: 13  RELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERLYSVGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R +R +          +I     +  D    
Sbjct: 73  P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ VAL                    +G   ++  G + G  +++    E     
Sbjct: 127 VLAMLGSSVALS-------------ISDIPFEGPTGSVLVGYVDGRIVINPTAKEREVSK 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A+     +D     +  A++ I  +++
Sbjct: 174 LHLVVSGTKD-RVMMIEAGAKEVP--EDIMIEAIMTAQEEIKKIVE 216


>gi|302872107|ref|YP_003840743.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574966|gb|ADL42757.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 701

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/249 (22%), Positives = 93/249 (37%), Gaps = 27/249 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R  GR+ +++R +     +     GS L K G T +LT ATL  K  M     +   +  
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG          R+ G       +  RAL  V+         I +  +
Sbjct: 373 RYMHHYNFPPFSTGESKPIRGPGRREIGHG----ALAERALEPVIPSEDEFPYTIRLVSE 428

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           V+ ++G T  A++ G+ +AL D                 +K  VA IS G++        
Sbjct: 429 VLTSNGSTSQASVCGSTLALMDAGV-------------PIKAPVAGISIGLITKDDDSFI 475

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    +++     L  AK+    ++ 
Sbjct: 476 LLTDIQGIEDFFGDMDFKVAGTREG-ITAIQLDIKIHGLTREIIEKALYQAKEARLKILD 534

Query: 233 LQKDVISNE 241
             + VI   
Sbjct: 535 FMQTVIDKP 543



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 86/234 (36%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           RE+S      +  A G+ L ++GDT +L TA       E +  +     +       G +
Sbjct: 13  RELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERLYSVGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R +R +          +I     +  D    
Sbjct: 73  P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ VAL                    +G   ++  G + G  +++    E     
Sbjct: 127 VLAMLGSSVALS-------------ISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSK 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    ++ ++  A+     +D     + +A++ I  +++  ++++  
Sbjct: 174 LHLVVSGTKD-RVMMIEAGAKEVP--EDIMIEAILIAQEEIKKIVEFIEEIVKE 224


>gi|319789227|ref|YP_004150860.1| polyribonucleotide nucleotidyltransferase [Thermovibrio
           ammonificans HB-1]
 gi|317113729|gb|ADU96219.1| polyribonucleotide nucleotidyltransferase [Thermovibrio
           ammonificans HB-1]
          Length = 714

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 92/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKH 56
           +R+ GR+ +++R IS+   +   A GS L   G T  L T TL   E+  +   +   + 
Sbjct: 311 VRIDGRKPDEIRPISIEVGLLPRAHGSALFTRGQTQALVTTTLGTPEEYQLVEGLMPEEQ 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P   G      +     G R      +  RAL  V+         I +  
Sbjct: 371 KRFMLHYNFPPFCVGE----ISPMRGPGRREIGHGALAERALAPVIPPEEEFPYVIRVVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           D+++++G +  A + G  ++L D                 +K  VA I+ G++       
Sbjct: 427 DILESNGSSSMATVCGGSLSLMDAGV-------------PIKAQVAGIAMGLIMEGDKFV 473

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  A+     ++ 
Sbjct: 474 VLSDILGDEDHLGDMDFKVAGTRKG-VTAIQMDLKVKGISREVLSKALEQARRGRMFILD 532

Query: 233 LQKDVISNE 241
               VIS  
Sbjct: 533 KMDAVISEP 541



 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 86/230 (37%), Gaps = 27/230 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +      V+K A+GS LV  GDT +L TA       E V  +    ++       G +
Sbjct: 13  RPMRFQTGKVAKQADGSVLVSQGDTIVLVTAVMSDEPREDVDFFPLLVEYRERAYAAGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+         R+  R++R +         Q+I        +    
Sbjct: 73  P---GGFIKRE---GKPTDEEILKARVTDRSIRPIFPKGFRNDVQVIAFVISADQENDPA 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI GA  ALH                   +  V A+    + G  +++  Y E    D
Sbjct: 127 VLAINGASAALH-------------ISRIPFEKPVGAVRVARVDGKLVINPSYEERQRAD 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T+   +V V+G A+     ++     + LA + I  ++K Q +
Sbjct: 174 IDLIVSGTEDA-VVMVEGGAKEVP--EEEVLDAILLAHEEIKKIVKAQDE 220


>gi|322490890|emb|CBZ26154.1| putative exosome complex exonuclease rrp41 [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 246

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 95/245 (38%), Gaps = 24/245 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           +RL GR+  + R + +        +GSC +  G + +  +     + +           +
Sbjct: 13  LRLDGRRPREARRMDIAFGTLSACDGSCDITLGQSKVCASVFGPRESLHKQEAKHDKALV 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           T E  +   +  NR        R+   S++I   + +  RSV+ LS   + QI I  +V+
Sbjct: 73  TCEVAVAAFAGENRR----NPQRRSRLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           Q DG  + A I  A +AL D    M D              V  I  G+L  + ++DL  
Sbjct: 129 QQDGNEKIACINAACLALIDANVAMRDA-------------VCCIDAGILDEHMLIDLTN 175

Query: 180 GE--DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQKD 236
            E       + A F   D+ +I+ ++ ++       D    +L  A++    L +   + 
Sbjct: 176 DELRSQCPVIAAAFTGHDTRNIIWLETTSR---LPPDSATRLLKCAEEGATKLFETTMRK 232

Query: 237 VISNE 241
            +   
Sbjct: 233 ALEEH 237


>gi|206901853|ref|YP_002250868.1| polyribonucleotide nucleotidyltransferase [Dictyoglomus
           thermophilum H-6-12]
 gi|254782719|sp|B5YEB0|PNP_DICT6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|206740956|gb|ACI20014.1| polyribonucleotide nucleotidyltransferase [Dictyoglomus
           thermophilum H-6-12]
          Length = 693

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 98/247 (39%), Gaps = 25/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGW 58
           R+ GR+ N++R +S    V K   GS L + G+T +L+  T    EE++   +  ++   
Sbjct: 315 RVDGRKLNEIRPVSCEVGVLKRVHGSALFQRGETQVLSVVTLGAGEEQIIESVIESEPKR 374

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
               Y   P S G          R+ G       +  RAL  ++         I +  +V
Sbjct: 375 YIHHYNFPPFSVGEAKPLRGPKRREIGHG----ALAERALLPLIPKEEEFPYTIRVVSEV 430

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YPI 174
           + ++G T  A++ G+ ++L D                 +K HVA ++ G++        +
Sbjct: 431 LSSNGSTSMASVCGSSLSLMDAGV-------------PIKTHVAGVAMGLIKEGDRFEVL 477

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED+   +D     T +G I  VQ   +    S +     L  AK+    ++ + 
Sbjct: 478 TDIQGLEDALGGMDFKIAGTRNG-ITAVQLDIKVDGLSYEIIERTLKQAKEARYQILDIM 536

Query: 235 KDVISNE 241
           +  I   
Sbjct: 537 EKTIPQP 543



 Score = 89.0 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 87/233 (37%), Gaps = 27/233 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           E+ +    V+  A G+ LV++G+T +L T       +E V  +    ++       G +P
Sbjct: 15  ELKIDIGKVAWQATGAALVQYGETTVLVTVVASEDKKEDVDFFPLTVEYVERLYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   G+         R+I R LR +         Q+I+       +  T  
Sbjct: 75  ---GGFFKRE---GKPTEPEILFARLIDRPLRPLFAKDFRNEVQVIVTVLSYDHENSTDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            +I GA  A+                    KG + A+  G       ++      +++ +
Sbjct: 129 PSIIGASCAIILAGL-------------PFKGPIGAVRIGWDGNEWYINPPVTLSNSLLL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     T    ++ ++G  +     +D F   +  A   + D+I  Q++++S 
Sbjct: 176 DLVVAGTKDA-VLMIEGDGKEVP--EDIFLEGIIKAHSAMLDVINFQEEILSQ 225


>gi|239826663|ref|YP_002949287.1| polynucleotide phosphorylase/polyadenylase [Geobacillus sp. WCH70]
 gi|259534128|sp|C5D9D5|PNP_GEOSW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|239806956|gb|ACS24021.1| 3' exoribonuclease [Geobacillus sp. WCH70]
          Length = 712

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    V     GS L   G T +L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKIDEIRPLSSEVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGLGIEET 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G            G R      +  RAL  VV         I +  
Sbjct: 375 KRFMHHYNFPPFSVGE----TGPMRGPGRREIGHGALGERALEPVVPSEKEFPYTIRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKNDDNYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK    ++++
Sbjct: 478 ILTDIQGIEDHLGDMDFKVAGTAKG-VTALQMDIKIKGLSREILEEALQQAKKGRMEILE 536

Query: 233 LQKDVISNE 241
                I   
Sbjct: 537 HMMQTIREP 545



 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 91/233 (39%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RPLVVEIGQLAKQANGAVLVRYGDTVVLNTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         QI+     +  D     
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFAEGFRNEVQIVSMVMSVDQDCSPEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ GA +AL                    +G +A ++ G + G  +++    +    D+
Sbjct: 129 AALFGASLAL-------------TISDIPFEGPIAGVTVGRVDGEFVINPTVEQSEKSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 T    I  V+  A+     ++     +    + +  LI  Q+++ + 
Sbjct: 176 HLVVAGTKDA-INMVEAGADEVP--EEVILEAIMFGHEEVKRLIAFQEEIAAQ 225


>gi|167618527|ref|ZP_02387158.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           thailandensis Bt4]
          Length = 713

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 96/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  AT     +E++   +      
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSADEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K+ 
Sbjct: 489 LGDEDHLGDMDFKVAGTAEG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKEA 547

Query: 238 ISN 240
           ++ 
Sbjct: 548 VAG 550



 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 76/234 (32%), Gaps = 38/234 (16%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    +++ A G+ LV   DT +L T       +     +     +   T   G +P
Sbjct: 17  KVRLETGEIARQASGAVLVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR         R+I R LR +         Q++I    +  +     
Sbjct: 77  ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEVPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRL 177

Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++ V+  A++           F  +     ++     I +L++
Sbjct: 178 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 226


>gi|194289155|ref|YP_002005062.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus taiwanensis
           LMG 19424]
 gi|226702643|sp|B3R3W3|PNP_CUPTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|193222990|emb|CAQ68995.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus taiwanensis
           LMG 19424]
          Length = 723

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 99/242 (40%), Gaps = 18/242 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L  ATL    +E++   +      
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL  V+      +  I +  +
Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPKEDEFAYTIRLVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    ++       +  +L+G+  A+         + D+
Sbjct: 433 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAV---------LTDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     TD+G I  +Q   +    +++     L  AK+    ++   ++ 
Sbjct: 484 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILSNMQEA 542

Query: 238 IS 239
           + 
Sbjct: 543 MG 544



 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 80/233 (34%), Gaps = 31/233 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
           ++ +    +++ A G+ LV   DT +L T     + +     +     +   T   G +P
Sbjct: 17  KVRMETGEIARQAGGAVLVDVEDTVVLATVVAAKSPKPGQDFFPLTVDYIEKTYAAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR         R+I R LR +         Q+++    +  +     
Sbjct: 77  ---GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVVHVVSLNPEVPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A   G   G  +++    + +T D+
Sbjct: 131 PALIGASAALAVSGI-------------PFNGPVGAARVGYKDGQYLLNPTRSQIATSDL 177

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
           D     T+   ++     +E    S+D     +    +     I  + +L ++
Sbjct: 178 DLVVAGTERAVLMV---ESEANQLSEDVMLGAVVYGHEQMQTAINAIHELVRE 227


>gi|83718859|ref|YP_441610.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           thailandensis E264]
 gi|167580418|ref|ZP_02373292.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           thailandensis TXDOH]
 gi|257139694|ref|ZP_05587956.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           thailandensis E264]
 gi|123726649|sp|Q2SZN9|PNP_BURTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|83652684|gb|ABC36747.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           thailandensis E264]
          Length = 713

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 96/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  AT     +E++   +      
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSADEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K+ 
Sbjct: 489 LGDEDHLGDMDFKVAGTAEG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKEA 547

Query: 238 ISN 240
           ++ 
Sbjct: 548 VAG 550



 Score = 75.5 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 76/234 (32%), Gaps = 38/234 (16%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    +++ A G+ LV   DT +L T       +     +     +   T   G +P
Sbjct: 17  KVRLETGEIARQASGAVLVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR         R+I R LR +         Q++I    +  +     
Sbjct: 77  ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEVPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRL 177

Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++ V+  A++           F  +     ++     I +L++
Sbjct: 178 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 226


>gi|297537320|ref|YP_003673089.1| polyribonucleotide nucleotidyltransferase [Methylotenera sp. 301]
 gi|297256667|gb|ADI28512.1| polyribonucleotide nucleotidyltransferase [Methylotenera sp. 301]
          Length = 709

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 98/243 (40%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R IS+   V     GS L   G+T  L  ATL    +E+V   ++     
Sbjct: 316 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQVIDALQGEFKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +      R+ G      R+  R+L + +   A     + +  +
Sbjct: 376 RFMLHYNMPPYATGETGRVGTPKRREIGHG----RLAKRSLIAALPDQADFDYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  + +G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLALMDAGVPMKSLVAGIAMGLIKEGNRVAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   +    +       L  AK+  A ++ + K  
Sbjct: 483 LGDEDHLGDMDFKVAGTEDG-ITALQMDIKITGITSQIMQVALAQAKEGRAHILGIMKAA 541

Query: 238 ISN 240
           +S+
Sbjct: 542 MSS 544



 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 85/237 (35%), Gaps = 46/237 (19%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
           ++L    +S+ A+ + +V +GDT +L   T + +V      +     +   T   G +P 
Sbjct: 16  LTLETGEISRQADAAVMVSYGDTVVLVAVTSKSEVKAGQDFFPLTVDYMEKTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV----IQADGG 124
             G   KRE   GR   +     R+I R LR +   +     Q++         I AD  
Sbjct: 75  --GGFFKRE---GRPSEKETLTSRLIDRPLRPLFPEAFYNEVQVVATVLSSDPEIDAD-- 127

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               AI GA  A+                     G + A   G +    +++    +   
Sbjct: 128 --IPAIIGASAAMSLSGI-------------PFFGPLGAARVGYINDEYVLNPTKAQLEE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAER---------ATFSQDHFFAMLNLAKDRIADLIK 232
            ++D     T++  ++ V+  A+            F  +   A++ +    IA+L  
Sbjct: 173 TELDLVVAATETA-VMMVESEAKELSEEVMLGAVVFGHEQMQAVIKM----IAELAA 224


>gi|169595492|ref|XP_001791170.1| hypothetical protein SNOG_00485 [Phaeosphaeria nodorum SN15]
 gi|111070860|gb|EAT91980.1| hypothetical protein SNOG_00485 [Phaeosphaeria nodorum SN15]
          Length = 251

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 85/243 (34%), Gaps = 13/243 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR---NTKHG 57
           +RL GR+ N++R I         A+GS  ++ G+T +L + T   +     +   N    
Sbjct: 13  LRLDGRRWNELRRIHAQISTQAAADGSSYLEMGNTKILVSVTGPAEGKQAGQRGGNGGQA 72

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +  E      S           G    RS+E++  +  A   V+ L       I ++  
Sbjct: 73  KVEVEINFAGFSGME----RRRRGGGDKRSKEMEHCVRSAFEGVLLLHLYPHSTITLNIH 128

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +I  DG    A I  + +AL D    M D       +       ++ +       P++DL
Sbjct: 129 IISQDGSLLAACINASTLALIDAGIPMTDYLVACTAAS---SASSSAADNASAEDPLLDL 185

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +  E+  +       + +S  +              +    ML +  +    L  +  +V
Sbjct: 186 NTLEEQELPFLTVGTLGESDKVAVCVL---ETRVRMERLEGMLAVGIEGCKRLRSILDEV 242

Query: 238 ISN 240
           +  
Sbjct: 243 VKG 245


>gi|163855920|ref|YP_001630218.1| polynucleotide phosphorylase/polyadenylase [Bordetella petrii DSM
           12804]
 gi|226702623|sp|A9IGJ9|PNP_BORPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|163259648|emb|CAP41949.1| polyribonucleotide nucleotidyltransferase [Bordetella petrii]
          Length = 719

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 320 RIDGRDTRTVRPIEIRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +      R+ G      R+  RAL S++         I +  +
Sbjct: 380 RFMLHYNMPPFATGETGRIGVPKRREIGHG----RLAKRALVSLLPAHEDFQYTIRLVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +A+ D    ++D      +  +L     A+         + D+
Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPLQDHVAGVAMGLILDDGKFAV---------LTDI 486

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T +G I  +Q   +    +++     L  A++    ++   ++ 
Sbjct: 487 LGDEDHLGDMDFKVAGTQNG-ITALQMDIKIQGITKEIMQVALAQAREGRLHILGKMREA 545

Query: 238 ISN 240
           +  
Sbjct: 546 LEG 548



 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 78/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           + L    +++ A G+ LV   DT +L T       +     +     +   T   G +P 
Sbjct: 16  VVLETGEIARQASGAVLVSVDDTVVLATVVAAKKAKPGQTFFPLTVDYIEKTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+   +     R+I R LR +         Q+++    +  +      
Sbjct: 75  --GGFFKRE---GKPSEKETLTSRLIDRPLRPLFPEGFYNEVQVVLHTVSVNPEIDPDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    +  +  +D
Sbjct: 130 AMIGASAALAISGI-------------PFNGPIGAARVGYVDGQYVLNPTATQLKSSQMD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
                T++  ++     +E    S+D     +    +     I  +  L +D 
Sbjct: 177 LVVAGTENAVLMV---ESEAKQLSEDVMLGGVVYGHEQMQAAINAIHDLVRDA 226


>gi|157877098|ref|XP_001686881.1| exosome complex exonuclease RRP41 [Leishmania major strain
           Friedlin]
 gi|68129956|emb|CAJ09264.1| putative exosome complex exonuclease rrp41 [Leishmania major strain
           Friedlin]
          Length = 246

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 95/245 (38%), Gaps = 24/245 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           +RL GR+  + R + +        +GSC +  G + +        + +         G +
Sbjct: 13  LRLDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLV 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           T E  +   +  NR        R+   S++I   + +  RSV+ LS   + QI I  +V+
Sbjct: 73  TCEVAVAAFAGENRR----NPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           Q DG  + A +  A +AL D    M D              V  I  G+L  + ++DL  
Sbjct: 129 QQDGNEKIACVNAACLALIDANVAMRDA-------------VCCIDAGILDEHMLIDLTS 175

Query: 180 GE--DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL-QKD 236
            E       + A F   D+ +I+ ++ ++       D    +L  A++    L +   + 
Sbjct: 176 NELRSQCPVIAAAFTGHDTRNIIWLETASR---LPPDSVTRLLKCAEEGATKLFEATMRK 232

Query: 237 VISNE 241
            +   
Sbjct: 233 ALEEH 237


>gi|312793244|ref|YP_004026167.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180384|gb|ADQ40554.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 701

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 95/249 (38%), Gaps = 27/249 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R  GR+ +++R +     +     GS L K G T +LT ATL  K  M     +   +  
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG          R+ G       +  RAL  V+         I +  +
Sbjct: 373 RYMHHYNFPPFSTGESKPVRGPGRREIGHG----ALAERALEPVIPSEDEFPYTIRLVSE 428

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           V+ ++G T  A++ G+ +AL D                 +K  VA IS G++    G  I
Sbjct: 429 VLTSNGSTSQASVCGSTLALMDAGV-------------PIKAPVAGISIGLITKDDGSFI 475

Query: 175 V--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +  D+   ED   D+D     T  G I  +Q   +    +++     L  A++    ++ 
Sbjct: 476 LLTDIQGIEDFFGDMDFKVAGTREG-ITAIQLDIKIHGLTKEIIEKALYQAREARLKILD 534

Query: 233 LQKDVISNE 241
             + VI   
Sbjct: 535 FMQTVIDKP 543



 Score = 88.6 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           RE+S      +  A G+ L ++GDT +L TA       E +  +     +       G +
Sbjct: 13  RELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERLYSVGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R +R +          +I     +  D    
Sbjct: 73  P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ VAL                    +G   ++  G + G  +++    E     
Sbjct: 127 VLAMLGSSVALS-------------ISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSK 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A+     +D     +  A++ I  +++
Sbjct: 174 LHLVVSGTKD-RVMMIEAGAKEVP--EDIMLEAIMTAQEEIKKIVE 216


>gi|167836045|ref|ZP_02462928.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           thailandensis MSMB43]
          Length = 706

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 96/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  AT     +E++   +      
Sbjct: 315 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +  +      I +  +
Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSADEFGYSIRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 481

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K+ 
Sbjct: 482 LGDEDHLGDMDFKVAGTAEG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKEA 540

Query: 238 ISN 240
           ++ 
Sbjct: 541 VAG 543



 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 76/234 (32%), Gaps = 38/234 (16%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    +++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 10  KVRLETGEIARQASGAVVVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 69

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR         R+I R LR +         Q++I    +  +     
Sbjct: 70  ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 123

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 124 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNNEYVLNPTRAQIKASRL 170

Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++ V+  A++           F  +     ++     I +L++
Sbjct: 171 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 219


>gi|300691020|ref|YP_003752015.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           PSI07]
 gi|299078080|emb|CBJ50723.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           PSI07]
          Length = 722

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 98/242 (40%), Gaps = 18/242 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L  ATL    +E++   +      
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALSGEYRD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL  V+      +  I +  +
Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPKEDEFAYTIRLVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    ++       +  +L+G+  A+         + D+
Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAV---------LTDI 481

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     TD+G I  +Q   +    +++     L  AK+    ++   +  
Sbjct: 482 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQSA 540

Query: 238 IS 239
           + 
Sbjct: 541 MG 542



 Score = 74.7 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 78/233 (33%), Gaps = 31/233 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ +    +++ A G+ L+   DT +L T       +     +     +   T   G +P
Sbjct: 15  KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNAKPGQDFFPLTVDYIEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR         R+I R LR +         Q+++   V+        
Sbjct: 75  ---GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVV--HVL-------- 118

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            +I     A  D    +   +          G V A   G   G  +++ +  + +  D+
Sbjct: 119 -SINPEVPA--DIPALVASSAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
           D     T+   ++     +E    S+D     +    +     I  +  L ++
Sbjct: 176 DLVVAGTERAVLMV---ESEANQLSEDVMLGAVVYGHEQMQIAINAIHDLVRE 225


>gi|254298529|ref|ZP_04965981.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 406e]
 gi|157808347|gb|EDO85517.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 406e]
          Length = 713

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 96/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSADEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   KD 
Sbjct: 489 LGDEDHLGDMDFKVAGTADG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDA 547

Query: 238 ISN 240
           ++ 
Sbjct: 548 VAG 550



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 77/234 (32%), Gaps = 38/234 (16%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    +++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 17  KVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR         R+I R LR +         Q++I    +  +     
Sbjct: 77  ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +  T  +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNNEYVLNPTREQIKTSRL 177

Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++ V+  A++           F  +     ++     I +L++
Sbjct: 178 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 226


>gi|254181191|ref|ZP_04887788.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1655]
 gi|184211729|gb|EDU08772.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1655]
          Length = 713

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 96/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSADEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   KD 
Sbjct: 489 LGDEDHLGDMDFKVAGTADG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDA 547

Query: 238 ISN 240
           ++ 
Sbjct: 548 VAG 550



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 76/234 (32%), Gaps = 38/234 (16%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    +++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 17  KVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR         R+I R LR +         Q++I    +  +     
Sbjct: 77  ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRL 177

Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++ V+  A++           F  +     ++     I +L++
Sbjct: 178 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 226


>gi|53718843|ref|YP_107829.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei K96243]
 gi|76810240|ref|YP_332840.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 1710b]
 gi|126439036|ref|YP_001058334.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 668]
 gi|126454918|ref|YP_001065573.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 1106a]
 gi|134283923|ref|ZP_01770619.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 305]
 gi|167718839|ref|ZP_02402075.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei DM98]
 gi|167737848|ref|ZP_02410622.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 14]
 gi|167815032|ref|ZP_02446712.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 91]
 gi|167823448|ref|ZP_02454919.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 9]
 gi|167845000|ref|ZP_02470508.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei B7210]
 gi|167893541|ref|ZP_02480943.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 7894]
 gi|167901988|ref|ZP_02489193.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei NCTC 13177]
 gi|167910223|ref|ZP_02497314.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei 112]
 gi|167918256|ref|ZP_02505347.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           pseudomallei BCC215]
 gi|217419798|ref|ZP_03451304.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 576]
 gi|226195372|ref|ZP_03790961.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei Pakistan 9]
 gi|237811578|ref|YP_002896029.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei MSHR346]
 gi|242315054|ref|ZP_04814070.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1106b]
 gi|254190554|ref|ZP_04897061.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254258157|ref|ZP_04949211.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1710a]
 gi|81380050|sp|Q63VN7|PNP_BURPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123599745|sp|Q3JUB3|PNP_BURP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470947|sp|A3NTA2|PNP_BURP0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470948|sp|A3N7L3|PNP_BURP6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|52209257|emb|CAH35202.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei K96243]
 gi|76579693|gb|ABA49168.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1710b]
 gi|126218529|gb|ABN82035.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 668]
 gi|126228560|gb|ABN92100.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1106a]
 gi|134244712|gb|EBA44810.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 305]
 gi|157938229|gb|EDO93899.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|217397102|gb|EEC37118.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 576]
 gi|225932574|gb|EEH28572.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei Pakistan 9]
 gi|237503430|gb|ACQ95748.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei MSHR346]
 gi|242138293|gb|EES24695.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1106b]
 gi|254216846|gb|EET06230.1| polyribonucleotide nucleotidyltransferase [Burkholderia
           pseudomallei 1710a]
          Length = 713

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 96/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSADEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   KD 
Sbjct: 489 LGDEDHLGDMDFKVAGTADG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDA 547

Query: 238 ISN 240
           ++ 
Sbjct: 548 VAG 550



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 76/234 (32%), Gaps = 38/234 (16%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    +++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 17  KVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR         R+I R LR +         Q++I    +  +     
Sbjct: 77  ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRL 177

Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++ V+  A++           F  +     ++     I +L++
Sbjct: 178 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 226


>gi|299066328|emb|CBJ37512.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           CMR15]
          Length = 717

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 99/242 (40%), Gaps = 18/242 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L  ATL    +E++   ++     
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL  V+      +  I +  +
Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPKDDEFAYTIRLVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    ++       +  +L+G+  A+         + D+
Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAV---------LTDI 481

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     TD+G I  +Q   +    +++     L  AK+    ++   +  
Sbjct: 482 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQAA 540

Query: 238 IS 239
           + 
Sbjct: 541 MG 542



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 78/233 (33%), Gaps = 31/233 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ +    +++ A G+ L+   DT +L T       +     +     +   T   G +P
Sbjct: 15  KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNAKPGQDFFPLTVDYIEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR         R+I R LR +         Q++I   V+        
Sbjct: 75  ---GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVI--HVL-------- 118

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            +I     A  D    +   +          G V A   G   G  +++ +  + +  D+
Sbjct: 119 -SINPEVPA--DIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
           D     T+   ++     +E    S++     +    +     I  +  + +D
Sbjct: 176 DLVVAGTERAVLMV---ESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDMVRD 225


>gi|53725829|ref|YP_103438.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
           ATCC 23344]
 gi|67642196|ref|ZP_00440956.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Burkholderia
           mallei GB8 horse 4]
 gi|121601052|ref|YP_992465.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
           SAVP1]
 gi|124384993|ref|YP_001026732.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
           NCTC 10229]
 gi|126449416|ref|YP_001079983.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
           NCTC 10247]
 gi|167000372|ref|ZP_02266190.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
           PRL-20]
 gi|254175718|ref|ZP_04882378.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
           10399]
 gi|254202114|ref|ZP_04908477.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei FMH]
 gi|254207444|ref|ZP_04913794.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei JHU]
 gi|254359866|ref|ZP_04976136.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
           2002721280]
 gi|81604650|sp|Q62IN1|PNP_BURMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470944|sp|A3MI97|PNP_BURM7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470945|sp|A2S463|PNP_BURM9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470946|sp|A1V2L2|PNP_BURMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|52429252|gb|AAU49845.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
           23344]
 gi|121229862|gb|ABM52380.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
           SAVP1]
 gi|124293013|gb|ABN02282.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei NCTC
           10229]
 gi|126242286|gb|ABO05379.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei NCTC
           10247]
 gi|147746361|gb|EDK53438.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei FMH]
 gi|147751338|gb|EDK58405.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei JHU]
 gi|148029106|gb|EDK87011.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
           2002721280]
 gi|160696762|gb|EDP86732.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
           10399]
 gi|238523292|gb|EEP86731.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Burkholderia
           mallei GB8 horse 4]
 gi|243063706|gb|EES45892.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
           PRL-20]
          Length = 713

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 96/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSADEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   KD 
Sbjct: 489 LGDEDHLGDMDFKVAGTADG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDA 547

Query: 238 ISN 240
           ++ 
Sbjct: 548 VAG 550



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 76/234 (32%), Gaps = 38/234 (16%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    +++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 17  KVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR         R+I R LR +         Q++I    +  +     
Sbjct: 77  ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRL 177

Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++ V+  A++           F  +     ++     I +L++
Sbjct: 178 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 226


>gi|312622695|ref|YP_004024308.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203162|gb|ADQ46489.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 701

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 95/249 (38%), Gaps = 27/249 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R  GR+ +++R +     +     GS L K G T +LT ATL  K  M     +   +  
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG          R+ G       +  RAL  V+         I +  +
Sbjct: 373 RYMHHYNFPPFSTGESKPVRGPGRREIGHG----ALAERALEPVIPSEDEFPYTIRLVSE 428

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           V+ ++G T  A++ G+ +AL D                 +K  VA IS G++    G  I
Sbjct: 429 VLTSNGSTSQASVCGSTLALMDAGV-------------PIKAPVAGISIGLITKDDGSFI 475

Query: 175 V--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +  D+   ED   D+D     T  G I  +Q   +    +++     L  A++    ++ 
Sbjct: 476 LLTDIQGIEDFFGDMDFKVAGTREG-ITAIQLDIKIHGLTKEIIEKALYQAREARLKILD 534

Query: 233 LQKDVISNE 241
             + VI   
Sbjct: 535 FMQTVIDKP 543



 Score = 85.5 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           RE+S      +  A G+ L ++GDT +L TA       E +  +     +       G +
Sbjct: 13  RELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERLYSVGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R +R +          +I     +  D    
Sbjct: 73  P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ VAL                    +G   ++  G +    +++    E     
Sbjct: 127 VLAMLGSSVALS-------------ISDIPFEGPTGSVLVGYVDDKIVINPTAKEREVSK 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A+    S+D     +  A++ I  +++
Sbjct: 174 LHLVVSGTKD-RVMMIEAGAKE--VSEDIMLEAIMRAQEEIKKIVE 216


>gi|254251858|ref|ZP_04945176.1| Polyribonucleotide nucleotidyltransferase [Burkholderia dolosa
           AUO158]
 gi|124894467|gb|EAY68347.1| Polyribonucleotide nucleotidyltransferase [Burkholderia dolosa
           AUO158]
          Length = 722

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 97/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  AT     +E++   +      
Sbjct: 330 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 389

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +  +      I +  +
Sbjct: 390 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSAEEFGYSIRVVSE 445

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 446 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 496

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G +  +Q   +    +++     L  AK+    +++   + 
Sbjct: 497 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILRKMTEA 555

Query: 238 ISN 240
           +S 
Sbjct: 556 VSG 558



 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 76/234 (32%), Gaps = 38/234 (16%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    +++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 25  KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 84

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR         R+I R LR +         Q++I    +  +     
Sbjct: 85  ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 138

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 139 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNDQYVLNPTREQLKASRL 185

Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++ V+  A++           F  +     ++     I +L++
Sbjct: 186 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 234


>gi|113867066|ref|YP_725555.1| polynucleotide phosphorylase/polyadenylase [Ralstonia eutropha H16]
 gi|122947022|sp|Q0KCT4|PNP_RALEH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|113525842|emb|CAJ92187.1| polyribonucleotide nucleotidyltransferase [Ralstonia eutropha H16]
          Length = 723

 Score =  128 bits (323), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 99/242 (40%), Gaps = 18/242 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L  ATL    +E++   +      
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL  V+      +  I +  +
Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPKDDEFAYTIRLVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    ++       +  +L+G+  A+         + D+
Sbjct: 433 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAV---------LTDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     TD+G I  +Q   +    +++     L  A++    ++   ++ 
Sbjct: 484 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKVQGITKEIMQVALAQAREGRLHILHKMQEA 542

Query: 238 IS 239
           + 
Sbjct: 543 MG 544



 Score = 75.1 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 78/232 (33%), Gaps = 31/232 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           + +    +++ A G+ LV   DT +L T       +     +     +   T   G +P 
Sbjct: 18  VRMETGEIARQAGGAVLVDVEDTVVLATVVAAKNPKPGQDFFPLTVDYIEKTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R LR +         Q++I    +  +      
Sbjct: 77  --GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVIHVVSLNPEVPADIP 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G V A   G   G  +++    + +T D+D
Sbjct: 132 ALIGASAALAVSGI-------------PFNGPVGAARVGYKDGQYLLNPTRSQLATSDLD 178

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
                T+   ++     +E    S+D     +    +     I  + +L ++
Sbjct: 179 LVVAGTERAVLMV---ESEANQLSEDVMLGAVVYGHEQMQIAINAIHELVRE 227


>gi|91774427|ref|YP_544183.1| polynucleotide phosphorylase/polyadenylase [Methylobacillus
           flagellatus KT]
 gi|123078691|sp|Q1GXD2|PNP_METFK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|91708414|gb|ABE48342.1| 3' exoribonuclease [Methylobacillus flagellatus KT]
          Length = 714

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 97/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R IS+   V     GS L   G+T  L  ATL       I +   G    
Sbjct: 315 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDALQGEYAD 374

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +      R+ G      R+  RAL +V+         I +  +
Sbjct: 375 RFMLHYNMPPYATGETGRVGTPKRREIGHG----RLAKRALLAVLPSQEEFGYTIRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L D    ++       +  + +G+  A+         + D+
Sbjct: 431 ITESNGSSSMASVCGGCLSLLDAGVPLKAHVAGIAMGLIKEGNRVAV---------LTDI 481

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+SG I  +Q   +    + +     L+ AK+    ++ L K+ 
Sbjct: 482 LGDEDHLGDMDFKVAGTESG-ITALQMDIKITGITAEIMRVALSQAKEGRLHILGLMKEA 540

Query: 238 ISNE 241
           +  +
Sbjct: 541 VGEQ 544



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 77/207 (37%), Gaps = 33/207 (15%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
           E++L    +++ A+G+ +V +GDT +L +   + +V      +     +   T   G +P
Sbjct: 14  ELTLETGEIARQADGAVMVSYGDTVVLVSVVGKREVKEGQDFFPLTVDYQEKTYAAGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV----IQADG 123
              G   KRE   GR   +     R+I R LR +   +     Q++         I AD 
Sbjct: 74  ---GGFFKRE---GRPSEKETLTSRLIDRPLRPLFPEAFYNEVQVVATVMSSDPEIDAD- 126

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
                AI GA  AL                     G + A   G + G  +++    +  
Sbjct: 127 ---IPAIIGASAALAISGI-------------PFYGPIGAARVGYINGEYVLNPTASQLK 170

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERAT 210
              +D     T+S  ++ V+  A+   
Sbjct: 171 ETALDLVVAATESA-VLMVESEAKELP 196


>gi|332285140|ref|YP_004417051.1| polyribonucleotide nucleotidyltransferase [Pusillimonas sp. T7-7]
 gi|330429093|gb|AEC20427.1| polyribonucleotide nucleotidyltransferase [Pusillimonas sp. T7-7]
          Length = 715

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 99/245 (40%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R IS++  V   A GS L   G+T  L  ATL    +E++   I      
Sbjct: 320 RIDGRDTRTVRPISVSLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDSIMGEHRD 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P +TG   +  +   R+ G      R+  RAL S +  +      I I  +
Sbjct: 380 RFMLHYNFPPFATGETGRFGSPKRREIGHG----RLAKRALVSSLPEAQDFQYTIRIVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +A+ D                 +K HVA ++ G++        
Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGV-------------PVKDHVAGVAMGLIKDGGKFAV 482

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     L  AK+    ++  
Sbjct: 483 LTDILGDEDHLGDMDFKVAGTVTG-ITALQMDIKIQGITREIMQVALAQAKEGRLHILGK 541

Query: 234 QKDVI 238
            K+ +
Sbjct: 542 MKEAL 546



 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 79/232 (34%), Gaps = 36/232 (15%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           + L    +++ A G+ LV   DT +L T       +     +     +   T   G +P 
Sbjct: 16  VVLETGEIARQASGAVLVSIDDTVVLATVVGAKNAKPGQDFFPLTVDYVEKTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +     R+I R LR +         Q+I+    +  +     A
Sbjct: 75  --GGFFKRE---GRPSEKEILTSRLIDRPLRPLFPEGFYNEVQVILHTVSVNPEIDPDIA 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    +     ++
Sbjct: 130 AMIGASAALAISGI-------------PFNGPIGAARVGYIDGQYVLNPTSSQIQASQMN 176

Query: 189 ANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAMLNLAKDRIADLIK 232
                T++  ++   E Q  +E        F  D   A +N     I DL+ 
Sbjct: 177 LVVAGTEAAVLMVESEAQNLSEEVMLGGVMFGHDQMQAAIN----AIHDLVA 224


>gi|242025392|ref|XP_002433108.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212518649|gb|EEB20370.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 278

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 87/253 (34%), Gaps = 32/253 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR     R+I +   V   A+GS  ++  +T +L +     ++P     T +G I 
Sbjct: 41  IRKDGRTFEDQRKIYMKTGVVTQAKGSAYLELNNTKVLVSVFEPREIPRLSEFTPNGEIY 100

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            E+   P     R              +++  ++ R+L   V      + Q+ +   ++ 
Sbjct: 101 CEFKFAPFYGLERKGHIM-----DLEEKDLSIILKRSLEPAVCRHEFPNFQVDVYALLLD 155

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
            DG   +AAIT                         +   + +++ G+      +D ++ 
Sbjct: 156 NDGSCLSAAIT-------------AAGLALADAGIPMYDILTSVTLGIHNDMIFIDPNFE 202

Query: 181 EDSTI-------DVDANFV----MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
           E+            +   +    M +   + E+    +  T S +     ++L   +   
Sbjct: 203 EEKFCKSFFKNKTSEIGIISLSYMPEMAQVTEI---TQSGTVSINTILKSMDLLISKCKT 259

Query: 230 LIKLQKDVISNEV 242
           +  L K  + + V
Sbjct: 260 ISDLTKKCLMDNV 272


>gi|91087143|ref|XP_975288.1| PREDICTED: similar to exosomal 3-5 exoribonuclease complex subunit
           Rrp41-like protein [Tribolium castaneum]
          Length = 282

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 72/188 (38%), Gaps = 18/188 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   + R+I L   V   A+GS  ++   T ++ +     ++P     +  G I  
Sbjct: 42  RADGRTSTEHRKIFLKTGVVSQAKGSAYIELDQTKVIVSVFDPREIPNKTDYSSKGEIYC 101

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           E+   P S   R   +     Q    Q+   ++ +AL S V      + Q+ I   V+  
Sbjct: 102 EFKFAPFSCHKRRLHQ-----QDAEEQQFSAIMKQALESAVFRHEFPNFQVDIYAMVLHN 156

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DG   +AAIT A VAL      M D              + +++  +   + +VD    E
Sbjct: 157 DGAALSAAITAAGVALAHAGIPMYDL-------------ITSVTLAVQGNHLLVDPTLEE 203

Query: 182 DSTIDVDA 189
           +    V  
Sbjct: 204 ERLCQVPL 211


>gi|317402106|gb|EFV82699.1| polyribonucleotide nucleotidyltransferase [Achromobacter
           xylosoxidans C54]
          Length = 718

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 96/241 (39%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R IS+   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 320 RIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +      R+ G      R+  RAL  ++         I I  +
Sbjct: 380 RFMLHYNMPPFATGETGRIGVPKRREIGHG----RLAKRALIPLLPAPEDFQYTIRIVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +A+ D    ++D      +  +L G   A+         + D+
Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGGKFAV---------LTDI 486

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G +  +Q   +    +++     L  A++    ++   K+ 
Sbjct: 487 LGDEDHLGDMDFKVAGTENG-VTALQMDIKIQGITKEIMQVALAQAREGRLHILGKMKEA 545

Query: 238 I 238
           +
Sbjct: 546 L 546



 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 36/232 (15%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           + L    +++ A G+ +V   DT +L T       +     +     +   T   G +P 
Sbjct: 16  VVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLTVDYIEKTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+   +     R+I R LR +         Q++I    +  +      
Sbjct: 75  --GGFFKRE---GKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSVNPEIDPDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G   ++    +  +  +D
Sbjct: 130 AMIGASAALAISGI-------------PFNGPIGAARVGYIDGQYAINPTASQLKSSKLD 176

Query: 189 ANFVMTDSGHIV----EVQGSAE----RATFSQDHFFAMLNLAKDRIADLIK 232
                T++  ++      Q S E       +  +   A++N     I +L+K
Sbjct: 177 LVVAGTENAVLMVESEADQLSEEIMLGGVVYGHEQMQAVIN----AIHELVK 224


>gi|222529049|ref|YP_002572931.1| polynucleotide phosphorylase/polyadenylase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|257096680|sp|B9MR54|PNP_ANATD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|222455896|gb|ACM60158.1| Polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 701

 Score =  128 bits (322), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 95/249 (38%), Gaps = 27/249 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R  GR+ +++R +     +     GS L K G T +LT ATL  K  M     +   +  
Sbjct: 313 RPDGRKFDEIRPLYAEIGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG          R+ G       +  RAL  V+         I +  +
Sbjct: 373 RYMHHYNFPPFSTGESKPVRGPGRREIGHG----ALAERALEPVIPSEDEFPYTIRLVSE 428

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           V+ ++G T  A++ G+ +AL D                 +K  VA IS G++    G  I
Sbjct: 429 VLTSNGSTSQASVCGSTLALMDAGV-------------PIKAPVAGISIGLITKDDGSFI 475

Query: 175 V--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +  D+   ED   D+D     T  G I  +Q   +    +++     L  A++    ++ 
Sbjct: 476 LLTDIQGIEDFFGDMDFKVAGTREG-ITAIQLDIKIHGLTKEIIEKALYQAREARLKILD 534

Query: 233 LQKDVISNE 241
             + VI   
Sbjct: 535 FMQTVIDKP 543



 Score = 85.5 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           RE+S      +  A G+ L ++GDT +L TA       E +  +     +       G +
Sbjct: 13  RELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERLYSVGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R +R +          +I     +  D    
Sbjct: 73  P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ VAL                    +G   ++  G +    +++    E     
Sbjct: 127 VLAMLGSSVALS-------------ISDIPFEGPTGSVLVGYVDDKIVINPTAKEREVSK 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A+    S+D     +  A++ I  +++
Sbjct: 174 LHLVVSGTKD-RVMMIEAGAKE--VSEDIMLEAIMRAQEEIKKIVE 216


>gi|66472734|ref|NP_001018322.1| exosome complex exonuclease MTR3 [Danio rerio]
 gi|123905166|sp|Q6P0I8|EXOS6_DANRE RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
           component 6; AltName: Full=mRNA transport regulator 3
           homolog
 gi|63101434|gb|AAH95173.1| Exosome component 6 [Danio rerio]
 gi|68262418|gb|AAH65602.2| Exosome component 6 [Danio rerio]
 gi|182890526|gb|AAI64622.1| Exosc6 protein [Danio rerio]
          Length = 271

 Score =  127 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 85/244 (34%), Gaps = 25/244 (10%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWITAEYG 64
           R    +R +     +   A+GS  ++ G+T ++ +    ++       + K G +  ++ 
Sbjct: 37  RGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFR 96

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           + P S    VKR A       R  ++   +  +LR  V L      QI ++  V++ DG 
Sbjct: 97  LAPFSC---VKRGAWIQGSEER--DLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGS 151

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS- 183
               A+T A +AL D    M D              V   +        +VD  Y E+  
Sbjct: 152 VLAHAVTCASMALADAGIEMYDI-------------VLGCTLRQSGNACLVDPSYAEECG 198

Query: 184 -----TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                  D      +    ++ +V G        +D     +    D    L  + +  +
Sbjct: 199 SWQEGYGDNQGCVTLALLPNLNQVSGLNADGEMREDTLTEAMRTCMDGCHKLYPVVQQAL 258

Query: 239 SNEV 242
           +  V
Sbjct: 259 TRAV 262


>gi|300703637|ref|YP_003745239.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           CFBP2957]
 gi|299071300|emb|CBJ42618.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           CFBP2957]
          Length = 720

 Score =  127 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 99/242 (40%), Gaps = 18/242 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L  ATL    +E++   ++     
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL  V+      +  I +  +
Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPKDDEFAYTIRLVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    ++       +  +L+G+  A+         + D+
Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAV---------LTDI 481

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     TD+G I  +Q   +    +++     L  AK+    ++   +  
Sbjct: 482 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQSA 540

Query: 238 IS 239
           + 
Sbjct: 541 MG 542



 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 78/233 (33%), Gaps = 31/233 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ +    +++ A G+ L+   DT +L T       +     +     +   T   G +P
Sbjct: 15  KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLTVDYIEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR         R+I R LR +         Q+++   V+        
Sbjct: 75  ---GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVV--HVL-------- 118

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            +I     A  D    +   +          G V A   G   G  +++ +  + +  D+
Sbjct: 119 -SINPEVPA--DIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
           D     T+   ++     +E    S++     +    +     I  +  L ++
Sbjct: 176 DLVVAGTERAVLMV---ESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVRE 225


>gi|254585869|ref|XP_002498502.1| ZYRO0G11814p [Zygosaccharomyces rouxii]
 gi|238941396|emb|CAR29569.1| ZYRO0G11814p [Zygosaccharomyces rouxii]
          Length = 245

 Score =  127 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 93/245 (37%), Gaps = 25/245 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGW 58
           +R+ GR+ N++R    +     +A +GS  ++ G+  ++T     ++  +  + +     
Sbjct: 12  LRVDGRRWNELRRFDCSINTHSHAADGSSYLEQGNNKIITLVKGPKEPSLRSQMDPTKAL 71

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +     +   S   R K    S +   R  EIQ  + R     V L       I I+  V
Sbjct: 72  LKVSVNITKFSKTERSK---TSHKNERRVLEIQTALTRTFNKNVMLHIYPRTLIDIEIHV 128

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +Q DGG     I G  +AL D    M D             +++ +S G+    P+++++
Sbjct: 129 LQQDGGLVGTLINGITLALIDAGIAMFD-------------YISGVSVGLYDTTPLLEVN 175

Query: 179 YGEDSTI-DVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             E++ +  V    V  T+   ++ V           D   ++L +       + +L   
Sbjct: 176 SLEENVMSSVTLGVVGKTEKLSLLLV-----EDKIPLDRLESVLAIGIAGAHRVRELMDS 230

Query: 237 VISNE 241
            +   
Sbjct: 231 ELRKR 235


>gi|83746292|ref|ZP_00943345.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           UW551]
 gi|83727042|gb|EAP74167.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
           UW551]
          Length = 720

 Score =  127 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 99/242 (40%), Gaps = 18/242 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L  ATL    +E++   ++     
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL  V+      +  I +  +
Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPKDDEFAYTIRLVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    ++       +  +L+G+  A+         + D+
Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAV---------LTDI 481

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     TD+G I  +Q   +    +++     L  AK+    ++   +  
Sbjct: 482 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQSA 540

Query: 238 IS 239
           + 
Sbjct: 541 MG 542



 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 78/233 (33%), Gaps = 31/233 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ +    +++ A G+ L+   DT +L T       +     +     +   T   G +P
Sbjct: 15  KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLTVDYIEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR         R+I R LR +         Q+++   V+        
Sbjct: 75  ---GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVV--HVL-------- 118

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            +I     A  D    +   +          G V A   G   G  +++ +  + +  D+
Sbjct: 119 -SINPEVPA--DIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
           D     T+   ++     +E    S++     +    +     I  +  L ++
Sbjct: 176 DLVVAGTERAVLMV---ESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVRE 225


>gi|322503669|emb|CBZ38755.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 246

 Score =  127 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 95/245 (38%), Gaps = 24/245 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           +RL GR+  + R + +        +GSC +  G + +        + +         G +
Sbjct: 13  LRLDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLV 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           T E  +   +  NR        R+   S++I   + +  RSV+ LS   + QI I  +V+
Sbjct: 73  TCEVAVAAFAGENRR----NPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           Q DG  + A +  A +AL D    M D              V  I  G+L  + ++DL  
Sbjct: 129 QKDGNEKIACVNAACLALIDANVAMRDA-------------VCCIDAGILDEHMLIDLTN 175

Query: 180 GE--DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQKD 236
            E       + A F   D+ +I+ ++ ++       D    +L  A++    L +   + 
Sbjct: 176 DELRSQCPVIAAAFTGHDTRNIIWLETASR---LPPDSAARLLKCAEEGATKLFETAMRK 232

Query: 237 VISNE 241
            +   
Sbjct: 233 ALEEH 237


>gi|167044511|gb|ABZ09186.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           crenarchaeote HF4000_APKG6J21]
          Length = 272

 Score =  127 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 93/249 (37%), Gaps = 25/249 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+  R  ++ R + +   V  +A GS   + GDT +++   ++   P +      G    
Sbjct: 24  RIDDRALDEPRPLVIDTGVIPHANGSARARLGDTEVVSGIKVQPDKP-FPDMGDKGIFIC 82

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQIIID 115
              +LP +  +     A +G       EI R++ R +R   ++DLS +        I + 
Sbjct: 83  TAEILPLAHPS-----AETGPPQPNVIEIARVVDRGIRESGMIDLSQMVLQKDKSVIGVF 137

Query: 116 CD--VIQADGGTRTAAITGAWVALHDCLQH---MEDCSNKFQLSQ----VLKGHVAAISC 166
            D  V   DG    A    A  A+         M+D        Q     +     +++ 
Sbjct: 138 ADNVVTDHDGNLFDACSYAAVAAIITSKIPKWEMKDDKPVLIEDQASDTPITTIPISVTM 197

Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK-- 224
           G++  + IVD +  E   +D          G+IV +Q       FS +       L+   
Sbjct: 198 GLIGEFIIVDPNLDEWECLDARITITTNSDGNIVALQKGGSDG-FSLEQLVKCAELSIAI 256

Query: 225 -DRIADLIK 232
             +I D+IK
Sbjct: 257 GKKIRDIIK 265


>gi|294659898|ref|XP_462331.2| DEHA2G18194p [Debaryomyces hansenii CBS767]
 gi|199434319|emb|CAG90837.2| DEHA2G18194p [Debaryomyces hansenii]
          Length = 245

 Score =  127 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 83/236 (35%), Gaps = 22/236 (9%)

Query: 1   MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGW 58
           +R+ GR+ N++R            ++GS  ++ G+T ++       E       N+    
Sbjct: 12  LRIDGRRWNELRRFECRINTHPSSSDGSSYIEQGNTKIICMVQGPMEPSLRSQTNSSKAS 71

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           I     +   ST  R KR     +   R  E++  + R     V         I I+  V
Sbjct: 72  IEINLSVANFSTIERKKRL----KNEKRLIELKTTLERTFEQSVICKLYPRTVIQINLHV 127

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +  DGG          +AL D    M D             +V+AI+ G+    P++DL+
Sbjct: 128 LCQDGGLLAGMTNAITLALIDAGIAMYD-------------YVSAINAGLYDQTPLLDLN 174

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
             E++ +      V+  S  +  +           D   ++L +       +  L 
Sbjct: 175 TLEENDMSCLTIGVVGKSEKLALLLL---EDKMPLDMLESVLAIGIAGGHRVRDLM 227


>gi|293603832|ref|ZP_06686247.1| polyribonucleotide nucleotidyltransferase [Achromobacter piechaudii
           ATCC 43553]
 gi|292817669|gb|EFF76735.1| polyribonucleotide nucleotidyltransferase [Achromobacter piechaudii
           ATCC 43553]
          Length = 720

 Score =  127 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R IS+   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 320 RIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +      R+ G      R+  R+L  ++         I I  +
Sbjct: 380 RFMMHYNMPPFATGETGRIGVPKRREIGHG----RLAKRSLIPLLPAPEDFQYTIRIVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +A+ D    ++D      +  +L G   A+         + D+
Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGGKFAV---------LTDI 486

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G +  +Q   +    +++     L  A++    ++   K+ 
Sbjct: 487 LGDEDHLGDMDFKVAGTENG-VTALQMDIKIQGITKEIMQVALAQAREGRLHILTKMKEA 545

Query: 238 I 238
           +
Sbjct: 546 L 546



 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 81/232 (34%), Gaps = 36/232 (15%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           + L    +++ A G+ +V   DT +L T       +     +     +   T   G +P 
Sbjct: 16  VVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLTVDYIEKTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+   +     R+I R LR +         Q++I    +  +     A
Sbjct: 75  --GGFFKRE---GKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSVNPEIDPDIA 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G   ++    +  +  +D
Sbjct: 130 AMIGASAALAISGI-------------PFNGPIGAARVGYIDGQYALNPTASQLKSSKLD 176

Query: 189 ANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAMLNLAKDRIADLIK 232
                T++  ++   E Q  +E        +  +   A++N     I +L+K
Sbjct: 177 LVVAGTENAVLMVESEAQQLSEEIMLGGVVYGHEQMQAVIN----AIHELVK 224


>gi|238028147|ref|YP_002912378.1| polynucleotide phosphorylase/polyadenylase [Burkholderia glumae
           BGR1]
 gi|237877341|gb|ACR29674.1| Polyribonucleotide nucleotidyltransferase [Burkholderia glumae
           BGR1]
          Length = 709

 Score =  127 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 97/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  AT     +E++   +      
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSADEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+ +  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEDNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G +  +Q   +    +++     L  AK+    ++   K+ 
Sbjct: 489 LGDEDHLGDMDFKVAGTEAG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKES 547

Query: 238 ISN 240
           +S 
Sbjct: 548 VSG 550



 Score = 75.5 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 76/234 (32%), Gaps = 38/234 (16%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    +++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 17  KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKNAKPGQDFFPLTVDYIEKTYSAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR         R+I R LR +         Q++I    I  +     
Sbjct: 77  ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSINPEVPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYIDNQYVLNPTRDQIKASSL 177

Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++ V+  A++           F  +     ++     I +L++
Sbjct: 178 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 226


>gi|319778373|ref|YP_004129286.1| Polyribonucleotide nucleotidyltransferase [Taylorella equigenitalis
           MCE9]
 gi|317108397|gb|ADU91143.1| Polyribonucleotide nucleotidyltransferase [Taylorella equigenitalis
           MCE9]
          Length = 733

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 99/243 (40%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R IS+   V     GS L   G+T  L  ATL  K    I ++  G +  
Sbjct: 320 RIDGRDTRSVRPISIRLGVLPRTHGSALFTRGETQALVIATLGTKQDEQIVDSVMGEVRE 379

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +         I +  +
Sbjct: 380 HFMLHYNMPPFATGEVGRFGSPKRREIGHG----RLAKRALIATLPNQDDFQYTIRLVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +A+ D    +ED      +  + +G+  A+         + D+
Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPVEDHVAGVAMGLIKEGNKFAV---------LTDI 486

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   +    +++     L  AK+    ++   K+ 
Sbjct: 487 LGDEDHLGDMDFKVAGTEKG-ITALQMDIKIQGINKEIMQVALAQAKEGRLHILGKMKEA 545

Query: 238 ISN 240
           IS 
Sbjct: 546 ISG 548



 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 67/203 (33%), Gaps = 29/203 (14%)

Query: 37  LLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR 96
           ++     +     +     +   +   G +P   G   KRE   G+   +     R+I R
Sbjct: 44  VVAAKEAKAGQDFFPLTVDYVEKSYAAGRIP---GGYFKRE---GKPTEKETLTSRLIDR 97

Query: 97  ALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV 156
            LR +         Q+II    +  +     A++ G+  AL                   
Sbjct: 98  PLRPLFPEGFYNEVQVIIHVLSVDPEIDPDIASMIGSSAALS-------------ISGVP 144

Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
             G + A   G + G  +++    +    D+D     T+   ++     +E    S++  
Sbjct: 145 FDGPIGAARVGYINGQYVLNPSESQIKDSDMDLVVAGTEQAVLMV---ESEAKQLSEEIM 201

Query: 217 F-------AMLNLAKDRIADLIK 232
                     L LA + I DL+K
Sbjct: 202 LGGVVFGHEQLQLAINAIHDLVK 224


>gi|239618017|ref|YP_002941339.1| Polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF
           19.5.1]
 gi|197321135|gb|ACH68639.1| polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF
           19.5.1]
 gi|239506848|gb|ACR80335.1| Polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF
           19.5.1]
          Length = 737

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 96/249 (38%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R+ GR+  ++R I+    +     GS L   G+T  L T T    ++E++   +     
Sbjct: 323 LRMDGRKTTEIRPITCELDILPRTHGSALFTRGETQSLATVTLGAPIDEQIIDTLLEEGS 382

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +      R+ G       +  RAL++++         I +  
Sbjct: 383 KTFMLHYNFPPFSTGEVKRMRGPGRREIGHGH----LAERALKNMIPPEEEFPYTIRVVS 438

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++++++G +  A +    +AL                   +K HVA ++ G++       
Sbjct: 439 EILESNGSSSMATVCSGSLALMAAGV-------------PIKRHVAGVAMGLIQEPDETV 485

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I   Q   + A  S++     L  AK+    ++ 
Sbjct: 486 ILTDILGNEDHYGDMDFKVAGTRDG-ITAFQMDVKVAGVSEEIMLKALYQAKEARMKILD 544

Query: 233 LQKDVISNE 241
           L  + IS  
Sbjct: 545 LMYETISEP 553



 Score = 88.2 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 89/237 (37%), Gaps = 33/237 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY------- 63
           R+I +      K + G+C V+F D+ +L T    E+    +       +T E+       
Sbjct: 14  RKIIVEHGKMAKQSHGACFVRFADSAILATVNASEEP---LPQAGFVPLTVEFQEKFYAA 70

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           G +P   G  VKRE   G+    +    R+I R +R +         Q+I+       D 
Sbjct: 71  GKIP---GGFVKRE---GKPSENAILSARLIDRPIRPLFPKGMSNEVQVIVTVLSADPDN 124

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
              T  I  + +AL+                    G VA +  G + G  I      E  
Sbjct: 125 PPDTIGIFASSLALN-------------ISPIPFDGMVAGVRVGYVDGEYIFFPTSEELE 171

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             ++D     T    +  V+G A+    S++     L  A + I  L++ Q++++S 
Sbjct: 172 KSELDIVVAGTKEA-VTMVEGEAKE--VSEEVMLKALMKAHEAIKQLVEFQEEIVSE 225


>gi|268679240|ref|YP_003303671.1| polyribonucleotide nucleotidyltransferase [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617271|gb|ACZ11636.1| polyribonucleotide nucleotidyltransferase [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 746

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 94/243 (38%), Gaps = 22/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNT 54
           +R  GR+  ++R IS+   +   A GSCL   G T  L  ATL       +      +++
Sbjct: 343 VRADGRKLTEIRPISIETNLLPLAHGSCLFTRGQTQALVIATLGNDKDAQMYDLLTEKSS 402

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y     S G      A   R+ G       +  RAL  VVD++ L  + I +
Sbjct: 403 VSDTFMVNYNFPGFSVGEASPLRAPGRRELGHG----NLARRALEPVVDINRL--QTIRL 456

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++++++G +  A I G  +AL      +E       +  V +G   A+         +
Sbjct: 457 VSEILESNGSSSMATICGGALALKAAGVEIEKLVAGIAMGLVFEGDKHAV---------L 507

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED   D+D     T  G I  +Q   +    S+D     L  A++    ++ + 
Sbjct: 508 SDIMGLEDHDGDMDFKVAGTKDG-ITALQMDIKLGGISRDVLKEALYQAREGREHILAIM 566

Query: 235 KDV 237
           +  
Sbjct: 567 EKA 569



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 73/225 (32%), Gaps = 36/225 (16%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVK 75
           V+K A G+ L+K  +T +L T   ++       +     +T +Y     + G      +K
Sbjct: 19  VAKQAAGAALLKIKNTVILATVARDDTQ----VSENFVPLTVQYVEKSYAVGKIPGGYIK 74

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE    + G       R+I R+LR +         QI +      A+   +         
Sbjct: 75  RET---KPGDFETLTSRIIDRSLRPLFPKGYAYPTQITVFVLSCDAEVDLQV-------- 123

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
                       +  +     +   VA +  G + G  +V+          +D     T 
Sbjct: 124 -----AALNAAGAALYLSDIPVNKAVAGVRIGYVDGAYVVNPSNSLLKKSTLDLYVAGTK 178

Query: 196 SGHIVEVQG----SAERATFSQDHFFAMLN-------LAKDRIAD 229
              ++ ++     S E  +        ML+       +AK  I +
Sbjct: 179 E-ELLMIEMRSIASMESVSLPVMAIDPMLDPTLAENMMAKQVINE 222


>gi|289548545|ref|YP_003473533.1| polyribonucleotide nucleotidyltransferase [Thermocrinis albus DSM
           14484]
 gi|289182162|gb|ADC89406.1| polyribonucleotide nucleotidyltransferase [Thermocrinis albus DSM
           14484]
          Length = 704

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 87/247 (35%), Gaps = 23/247 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH----- 56
           R+ GR    +R I++     +   GS +   G T    T TL       +  + +     
Sbjct: 311 RIDGRGPKDIRPITIELHPFERPHGSAIFTRGQTQAFATVTLGAPEEAQMVESIYEGEVF 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG          R+ G       +  RAL  ++         I +  
Sbjct: 371 KRFMLHYNFPPFSTGEARSWGPPRRREIGHG----ALAERALEPLIPPEEEFPYIIRVVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G T  A +  A +AL D    M+  +    +  +++G    I         + D
Sbjct: 427 NILESNGSTSMATVCAASLALFDAGVPMKKHAAGIAMGLIMEGDRYVI---------LSD 477

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK- 235
           +   ED   D+D     T  G I  VQ   +     ++     L  AK+    L  LQK 
Sbjct: 478 ILGDEDQLGDMDFKVAGTKDG-ITSVQMDIKVKGLKKEIMREALQQAKEG--RLYILQKM 534

Query: 236 -DVISNE 241
            + I   
Sbjct: 535 YEAIPEP 541



 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 97/238 (40%), Gaps = 34/238 (14%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLP 67
            I +     +K A+G+ +V+ GDT +L TA + E+    V        +   ++ +G +P
Sbjct: 13  PIIIETGHYAKQADGAVVVRQGDTAVLVTAVMSEEPQTNVDFVPLTVDYREQSSAWGKIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
              G  +KRE   G+   R   + R+I R +R +          +++    + AD     
Sbjct: 73  ---GGFIKRE---GKPTDREILVSRVIDRPIRPLFPEGFSHD--VVVTALTLSADDKYDP 124

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AITGA  ALH                   +G +A +    + G  + +  Y E    
Sbjct: 125 DVLAITGASAALH-------------ISRIPFEGPIAGVRICRVEGRLVANPTYEERQKA 171

Query: 186 DVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
             D   VM  S   IV V+G A+     ++     L    + I DL++ Q++ + +++
Sbjct: 172 --DLEIVMAGSKDAIVMVEGGAKE--VDEEVLTEALYFGLEVIQDLLRAQEE-LRDKI 224


>gi|322695534|gb|EFY87340.1| exosome complex exonuclease RRP41 [Metarhizium acridum CQMa 102]
          Length = 291

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 89/254 (35%), Gaps = 32/254 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM----------W 50
           +R+ GR+ N++R +    R    A+GS   + G T ++   T   +              
Sbjct: 13  LRVDGRRWNELRRLHAQIRTQDAADGSSYFEMGHTKVMCVVTGPSEQQQAQVQAQRRGAQ 72

Query: 51  IRNTKHGWITAEYGMLPRSTGNRVKR---EAVSGRQ-----------GGRSQEIQRMIGR 96
                   I     +   S+ +R KR   +   GR+           G R+QEI+  I +
Sbjct: 73  ASGRDAASIIVNVVIAGFSSVDRKKRGRNDKEGGREIEHRALTWRGYGRRTQEIEITIAK 132

Query: 97  ALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV 156
           AL S V         I +   V+  DG    A I  A +A+ D    M D          
Sbjct: 133 ALSSTVHTHLFPHSSITVSLHVLSQDGSLLAALINAATLAVIDAGIPMTDYIAACTA--- 189

Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
             G  ++ + G     P++DL+  E+  +       + DS  +V +   +          
Sbjct: 190 --GSTSSYAAGDDSADPLLDLNNQEEQELPFLTVASLGDSDRVVALVCESRVQV---SRL 244

Query: 217 FAMLNLAKDRIADL 230
             ML +  D    +
Sbjct: 245 EGMLVVGLDGCKQV 258


>gi|311104446|ref|YP_003977299.1| polyribonucleotide nucleotidyltransferase [Achromobacter
           xylosoxidans A8]
 gi|310759135|gb|ADP14584.1| polyribonucleotide nucleotidyltransferase [Achromobacter
           xylosoxidans A8]
          Length = 720

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R IS+   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 320 RIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +      R+ G      R+  R+L  ++         I I  +
Sbjct: 380 RFMMHYNMPPFATGETGRIGVPKRREIGHG----RLAKRSLIPLLPAPEDFQYTIRIVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +A+ D    ++D      +  +L G   A+         + D+
Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGGKFAV---------LTDI 486

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G +  +Q   +    +++     L  A++    ++   K+ 
Sbjct: 487 LGDEDHLGDMDFKVAGTENG-VTALQMDIKIQGITKEIMQVALAQAREGRLHILGKMKEA 545

Query: 238 I 238
           +
Sbjct: 546 L 546



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 79/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           + L    +++ A G+ +V   DT +L T       +     +     +   T   G +P 
Sbjct: 16  VVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLTVDYIEKTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+   +     R+I R LR +         Q++I    +  +     A
Sbjct: 75  --GGFFKRE---GKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSVNPEIDPDIA 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G   ++    +  +  +D
Sbjct: 130 AMIGASAALAISGI-------------PFNGPIGAARVGYIDGQYAINPTASQLKSSKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S++     +     +    I  + +L KD 
Sbjct: 177 LVVAGTENAVLMV---ESEADQLSEEIMLGGVVYGHQQMQAVINAIHELVKDA 226


>gi|146297069|ref|YP_001180840.1| polynucleotide phosphorylase/polyadenylase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|187470950|sp|A4XL64|PNP_CALS8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145410645|gb|ABP67649.1| Polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 701

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 93/249 (37%), Gaps = 27/249 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R  GR+ +++R +     +     GS L K G T +LT ATL  K  M     +   +  
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG          R+ G       +  RAL  V+         I +  +
Sbjct: 373 RYMHHYNFPPYSTGESKPVRGPGRREIGHG----ALAERALEPVIPSEDEFPYTIRLVSE 428

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           V+ ++G T  A++ G+ +AL D                 +K  VA IS G++        
Sbjct: 429 VLTSNGSTSQASVCGSTLALMDAGV-------------PIKAPVAGISIGLITKEDGSFI 475

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    +++     L  A++    ++ 
Sbjct: 476 TLTDIQGIEDFFGDMDFKVAGTREG-ITAIQLDIKIHGLTKEIIEKALYQAREARLKILD 534

Query: 233 LQKDVISNE 241
             + VI   
Sbjct: 535 FMQTVIDKP 543



 Score = 88.6 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           RE+S      +  A G+ L ++GDT +L TA       E +  +     +       G +
Sbjct: 13  RELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTVDYEERLYSVGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R +R +          +I     +  D    
Sbjct: 73  P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVDPDNPPD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ VAL                    +G   ++  G + G  +++    E     
Sbjct: 127 VLAMLGSSVALS-------------ISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSK 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A+     +D     +  A++ I  +++
Sbjct: 174 LHLVVSGTKD-KVMMIEAGAQEIP--EDIMLEAIMTAQEEIKKIVE 216


>gi|197106893|ref|YP_002132270.1| polyribonucleotide nucleotidyltransferase [Phenylobacterium
           zucineum HLK1]
 gi|226702673|sp|B4RC48|PNP_PHEZH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|196480313|gb|ACG79841.1| polyribonucleotide nucleotidyltransferase [Phenylobacterium
           zucineum HLK1]
          Length = 715

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 93/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR  +Q+R I     V   A GS L   G+T  L   TL       + +   G    
Sbjct: 317 RIDGRTVDQVRPILGEVGVLPRAHGSALFTRGETQALCVTTLGTGDDEQLIDALEGKYFE 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      ++  RALR ++         I I  +
Sbjct: 377 KFMLHYNFPPFSVGETGRMGSPGRREVGHG----KLAWRALRPMLPSYEEFPYTIRIVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A + G+ +AL D                 LK  V+ I+ G++    G+ +
Sbjct: 433 IFESNGSSSMATVCGSSLALMDAGV-------------PLKKPVSGIAMGLILEKDGFAV 479

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   + A  +++     L  AK     ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTADG-ITSLQMDIKIAGITEEIMKKALEQAKGGRDHILAE 538

Query: 234 QKDVI 238
               +
Sbjct: 539 MNKAM 543



 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 33/228 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L      + A+G+ L  +G+T +L TA    + +     +     +       G +P 
Sbjct: 16  LTLETGRMARQADGAVLATYGETMVLATAVFAKSPKPGQDFFPLTVNYQEKFYAAGKIPG 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
           S   R       G    +     R+I R +R +         Q+I  C V+  D      
Sbjct: 76  SFPRR------EGAPSQKETLTSRLIDRPIRPLFVKGFKNEVQVI--CTVLAHDLENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                     G +AA   G + G  +++    E     
Sbjct: 128 IVAMVAASAALV-------------LSGVPFMGPIAAARVGYVNGEYVLNPTLDEMKESA 174

Query: 187 VDANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +D     T ++  +VE    +E    +++     +  A   +  +I  
Sbjct: 175 MDLVVAGTAEAVMMVE----SEIKELTEEQVLGGVTFAHKGMQPVIDA 218


>gi|307634882|gb|ADI84427.2| polyribonucleotide nucleotidyltransferase [Geobacter sulfurreducens
           KN400]
          Length = 740

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 96/246 (39%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R IS+   +   A GS L   G+T  L  +TL   +     ++ +G    
Sbjct: 356 RIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVASTLGTSIDEQRIDSLYGETRK 415

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R A   R+ G       +  RAL  VV         I I  D
Sbjct: 416 RFLLHYNFPPFSVGETSFRLAPGRREIGHGM----LAERALERVVPKHEDFPYTIRIVSD 471

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           +++++G +  A + G  +A+ D                 +K  VA I+ G++    G  I
Sbjct: 472 ILESNGSSSMATVCGGALAMMDAGV-------------PIKAPVAGIAMGLIKEGEGIAI 518

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G +  +Q   +    +++     L  A+D    ++  
Sbjct: 519 LSDILGDEDHLGDMDFKVAGTEAG-VTAIQMDIKITGVTREIMEKALLQARDGRLHILGK 577

Query: 234 QKDVIS 239
               I+
Sbjct: 578 MNQAIA 583



 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 79/230 (34%), Gaps = 27/230 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R I++     +K A G+ +V  GDT +L TA    +  E    +     +       G +
Sbjct: 56  RTITIATGKWAKQASGAVVVSCGDTVVLVTAVATKSAREGQDFFPLTVNYQEKAYAGGKI 115

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR         R I R +R +   S L   QI+        D    
Sbjct: 116 P---GGFFKRE---GRPSDNETLTSRFIDRPIRPLFPESFLNDTQIMATVVSADQDNDPG 169

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                     G +A +  G + G  + +    +    D
Sbjct: 170 ILAMIGASAAL-------------EVSDIPFLGPIAGVKVGRVDGQFVCNPTVEQLEKSD 216

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           ++   V      ++ V+G A  A  S+      +      +  +I+ Q D
Sbjct: 217 LEI-VVAASRDAVIMVEGGAAEA--SEKDVLEAIFFGHAAVQPIIEAQTD 263


>gi|167562173|ref|ZP_02355089.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           oklahomensis EO147]
 gi|167569418|ref|ZP_02362292.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           oklahomensis C6786]
          Length = 714

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 95/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSADEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++    + 
Sbjct: 489 LGDEDHLGDMDFKVAGTADG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTEA 547

Query: 238 ISN 240
           ++ 
Sbjct: 548 VAG 550



 Score = 76.7 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 74/233 (31%), Gaps = 36/233 (15%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    +++ A G+ LV   DT +L T       +     +     +   T   G +P
Sbjct: 17  KVRLETGEIARQASGAVLVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR         R+I R LR +         Q++I    +  +     
Sbjct: 77  ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEVPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRL 177

Query: 188 DANFVMTDSGHIV---EVQGSAER-----ATFSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++   E Q   E        F  +     ++     I +L++
Sbjct: 178 DLVVAGTERAVLMVESEAQQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 226


>gi|224060110|ref|XP_002300042.1| predicted protein [Populus trichocarpa]
 gi|222847300|gb|EEE84847.1| predicted protein [Populus trichocarpa]
          Length = 961

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 86/243 (35%), Gaps = 11/243 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKH 56
            R+ GR+ +++R +           GS L   GDT +L T TL           +     
Sbjct: 366 FRVDGRRLDEVRPLYCEAGYLPNLHGSSLFSRGDTQVLCTVTLGAPRDAQRLDSLVGPPT 425

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S     KR  ++ R+ G       +  +AL +V+         + I+ 
Sbjct: 426 KRFMLHYSFPPFSINEVGKRVGLNRREVGHGT----LAEKALLAVLPPEDDFPYTVRINS 481

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ +DG T  A + G  VA+ D    +++      +   L   V   +  +     + D
Sbjct: 482 EVMASDGSTSMATVCGGSVAMMDAGIPLQEHVAGVSVG--LVSEVDPSTGEIKDYRIVTD 539

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G +  VQ   + A    D     L  A      ++     
Sbjct: 540 ILGLEDHLGDMDFKIAGTRKG-VTAVQLDIKPAGIPLDIICECLEPALKGRLQILARMDQ 598

Query: 237 VIS 239
            IS
Sbjct: 599 EIS 601



 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 77/221 (34%), Gaps = 34/221 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R I+     ++++A GS ++   +T +L+T T                +T +Y     + 
Sbjct: 65  RLITFETGKIARFANGSVVLGMEETKVLSTVT----SSKGDSVRDFLPLTVDYQEKQFAQ 120

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--G 124
           G      ++RE   G    R     R+I R +R +         Q++    V+ +DG   
Sbjct: 121 GVIPSTYLRRE---GAPKERELLCGRLIDRPIRPLFPAGFYHEVQVMAS--VLSSDGRRD 175

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A      AL                     G +  I  G +CG  +V+    E S 
Sbjct: 176 PDVMAANATSAAL-------------MLSDIPWGGPIGVIRIGRICGQFVVNPTMDELSL 222

Query: 185 IDVDANFVMTDSGHI-VEVQGSAERATFSQDHFFAMLNLAK 224
            D++  +  T    + ++VQ        ++    A L LA 
Sbjct: 223 SDLNLVYACTKDKTLMIDVQAGG----IAEKDLEAGLRLAH 259


>gi|321469683|gb|EFX80662.1| hypothetical protein DAPPUDRAFT_50975 [Daphnia pulex]
          Length = 227

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 75/210 (35%), Gaps = 13/210 (6%)

Query: 16  LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           L   +   A+GS  ++ G+T L+       +V      + +G +  E+   P S   R  
Sbjct: 1   LKTGIISQAKGSAYIEQGNTKLVCGVYGPREVQKKSDFSLNGQLFCEFKFAPFSCQKRRG 60

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
            +     Q      +  ++  AL + V L      Q+ ++  VI+ DG    AA+T A +
Sbjct: 61  HQ-----QDNEELVLSGLLREALEAAVCLHKFPKAQVEVNVMVIENDGSPLAAALTCASL 115

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
           AL      M D      + Q+ K  +              +L++ E+++         T 
Sbjct: 116 ALASASIPMYDLMIGTSVRQIPKLFLLD---PTKDEEWQPELNHDENNSNLTVGFMPSTH 172

Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                +V           +    ML LA +
Sbjct: 173 -----QVSAYVHEGVSKTEDLEQMLKLATE 197


>gi|319956216|ref|YP_004167479.1| polyribonucleotide nucleotidyltransferase [Nitratifractor
           salsuginis DSM 16511]
 gi|319418620|gb|ADV45730.1| polyribonucleotide nucleotidyltransferase [Nitratifractor
           salsuginis DSM 16511]
          Length = 729

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 92/247 (37%), Gaps = 30/247 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNT 54
           +R  GR+ +++R IS+   +     GSCL   G+T  L T TL E     +      R+ 
Sbjct: 345 VRPDGRKPDEVRPISIETNLLPSVHGSCLFTRGETQALATVTLGEGKEGQLYELLTERSP 404

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +       Y   P   G      A S R+ G       +  RAL  V+D     SR I +
Sbjct: 405 RTERFMVHYNFPPFCVGEARPIGAPSRRELGHG----NLAKRALEPVIDREL--SRTIRL 458

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             ++++++G +  A +    +AL                   +   VA ++ G++     
Sbjct: 459 VSEILESNGSSSMATVCAGSLALVSA-------------EAEISALVAGVAMGLVKEGDR 505

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G I  +Q   +      +     L  AK     +
Sbjct: 506 HRVLTDIMGLEDHDGDMDFKVAGTRKG-ITAMQLDIKLGGLDLEILSEALTQAKKARFHI 564

Query: 231 IKLQKDV 237
           + L ++ 
Sbjct: 565 LDLMEEA 571



 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 84/259 (32%), Gaps = 56/259 (21%)

Query: 15  SLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRST 70
           S T   V++  +GS L + G T +L T    +K    P      ++         +P   
Sbjct: 16  SFTLGKVARQTDGSVLYRQGKTMILATVVSSDKAVHEPFLPLTVQYIEKAYAAAKIP--- 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G  VKRE+   +         R+I R+LR +          I +   V+ AD        
Sbjct: 73  GGFVKRES---KPSDFETLTSRIIDRSLRPLFPEDFAYPTVITV--LVLSAD-------- 119

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD--LDYGEDSTIDVD 188
                            +        ++  VAA+  G + G   ++  L   E+S +  D
Sbjct: 120 ---SEVDLQVAALHAANAALLVSDLPVERSVAAVRLGKIDGERRLNPPLSRMEESAL--D 174

Query: 189 ANFVMTDSGHIVEVQGSA----------------------------ERATFSQDHFFAML 220
              V +    ++ ++ +A                            E     ++   A++
Sbjct: 175 LLLVGSGE-ELLMIEMAAKATEVIEVEEIPEPELLMGPMPVLLPHQESNELPEEELIALI 233

Query: 221 NLAKDRIADLIKLQKDVIS 239
             A+  IA+  +  ++ + 
Sbjct: 234 GEARGEIAEACRRYEEALR 252


>gi|325294385|ref|YP_004280899.1| polyribonucleotide nucleotidyltransferase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064833|gb|ADY72840.1| Polyribonucleotide nucleotidyltransferase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 712

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 95/249 (38%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKH 56
           +R+ GR+ N++R I++   +     GS L   G T  L T TL   E+  +   +   + 
Sbjct: 311 IRIDGRKPNEIRPITIEVGLLPRVHGSALFTRGQTQALVTTTLGTPEEYQLVEGLMPEEQ 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P   G      A     G R      +  RAL  V+         I +  
Sbjct: 371 KRFMLHYNFPPFCVGE----VAPLRGPGRREIGHGALAERALAPVIPEEDEFPYVIRVVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           D+++++G +  A + G  ++L D                 +K  VA I+ G++     + 
Sbjct: 427 DILESNGSSSMATVCGGSLSLMDAGV-------------PIKAQVAGIAMGLILEGDKFV 473

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T  G +  +Q   +    S+D     L  A++    ++ 
Sbjct: 474 VLSDILGDEDHLGDMDFKVAGTRKG-VTAIQMDLKVKGISRDILMTALKQAREGRMYILD 532

Query: 233 LQKDVISNE 241
               VIS+ 
Sbjct: 533 KMDAVISSP 541



 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +        K A+G+ +V  GDT +L TA       E +  +    ++       G +
Sbjct: 13  RPLRFQTGKLAKQADGAVIVSQGDTMVLVTAVMSDEPREGIDFFPLLVEYRERAYAAGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  VKRE   G+         R+I R++R +         Q++        +    
Sbjct: 73  P---GGFVKRE---GKPTDEEVLKSRVIDRSIRPIFPKGFRNDVQVVAFVISADQENDPA 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI GA  ALH                   +  V A+    + G  +V+  Y +    D
Sbjct: 127 VLAINGASAALH-------------ISRIPFEKPVGAVRVVRVNGKLVVNPSYEQQQNAD 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           ++     T+   +V V+G A+     ++     + LA + I   I+ Q++
Sbjct: 174 INLVVSGTEDA-VVMVEGGAKEVP--EEEILDAIELAHEEIKKSIRAQQE 220


>gi|167044982|gb|ABZ09647.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           crenarchaeote HF4000_APKG8G2]
          Length = 272

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 93/249 (37%), Gaps = 25/249 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+  R  ++ R + +   V  +A GS   + GDT +++   ++   P +      G    
Sbjct: 24  RIDDRALDEPRPLVIDTGVIPHANGSARARLGDTEVVSGIKIQPDKP-FPDMGDKGIFIC 82

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQIIID 115
              +LP +  +     A +G       EI R++ R +R   ++DLS L        I + 
Sbjct: 83  TAEILPLAHPS-----AETGPPQPNVIEIARVVDRGIRESGMIDLSQLVLQKDKSVIGVF 137

Query: 116 CD--VIQADGGTRTAAITGAWVALHDCLQH---MEDCSNKFQLSQ----VLKGHVAAISC 166
            D  V   DG    A    A  A+         M+D        Q     +     +++ 
Sbjct: 138 ADNVVTDHDGNLFDACSYAAVAAIITSKIPKWEMKDDKPVLIEDQASDTPITTIPISVTM 197

Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK-- 224
           G++  + IVD +  E   +D          G+IV +Q       FS +       L+   
Sbjct: 198 GLMGEFIIVDPNLDEWECLDARITITTNSDGNIVALQKGGSDG-FSLEQLVKCSELSIAI 256

Query: 225 -DRIADLIK 232
             +I D+IK
Sbjct: 257 GKKIRDIIK 265


>gi|138894789|ref|YP_001125242.1| polynucleotide phosphorylase/polyadenylase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196247587|ref|ZP_03146289.1| Polyribonucleotide nucleotidyltransferase [Geobacillus sp. G11MC16]
 gi|187610268|sp|A4IME3|PNP_GEOTN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|134266302|gb|ABO66497.1| Polynucleotide phosphorylase PNPase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196212371|gb|EDY07128.1| Polyribonucleotide nucleotidyltransferase [Geobacillus sp. G11MC16]
          Length = 722

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T +L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKVDEIRPLSSAVGILPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGLDLEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G            G R      +  RAL  VV         I +  
Sbjct: 375 KRFMHHYNFPPFSVGE----TGPMRGPGRREIGHGALGERALEPVVPSEREFPYTIRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKNEDHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    ++D     L  A+    +++ 
Sbjct: 478 ILTDIQGIEDHLGDMDFKVAGTRKG-VTALQMDIKIKGLTRDILEEALQQARKGRLEILD 536

Query: 233 LQKDVISNE 241
                +S  
Sbjct: 537 HMMQTLSEP 545



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 90/233 (38%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L+TAT   +   V  +     +       G +P
Sbjct: 15  RPLVIETGELAKQANGAALVRYGDTVVLSTATASREAKDVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D     
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCSPEV 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ VAL                    +G +A +  G + G  +++    +    D+
Sbjct: 129 AALIGSSVAL-------------TISDIPFEGPIAGVIVGRIDGQFVINPTVEQMEKSDM 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 T    I  V+  A+     ++     +    + +  LI  Q+++ + 
Sbjct: 176 HLIVAGTKDA-INMVEAGADEVP--EEVMLEAIMFGHEEVKRLIAFQEEIAAQ 225


>gi|332030317|gb|EGI70060.1| Exosome complex exonuclease MTR3 [Acromyrmex echinatior]
          Length = 282

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 78/203 (38%), Gaps = 19/203 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R +N++R I L   +   A+GS  ++ G+T ++ +     ++P        G +  
Sbjct: 37  RHDDRSDNELRNIFLKTGIVSQAKGSAYIEMGNTKVICSVFDPREIPNKTGFCMQGELFC 96

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           E+     S   R   +     Q    +E   ++ RAL   V L    + Q+ +   V+  
Sbjct: 97  EFKFASFSHRKRKLHQ-----QDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVLDN 151

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
            G    AAI  A +AL +    M              G V A + G+  G  +VD    E
Sbjct: 152 GGSALAAAIMAASLALANAGVPMF-------------GLVTASTIGICKGTYLVDPTDIE 198

Query: 182 DSTIDVDANFVMTDSGHIVEVQG 204
           ++     A    T+   I+ VQ 
Sbjct: 199 ENFCSTKAASDTTNDHGII-VQA 220


>gi|328875321|gb|EGG23686.1| hypothetical protein DFA_05820 [Dictyostelium fasciculatum]
          Length = 307

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 89/253 (35%), Gaps = 23/253 (9%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
            R E Q R+I +   V   A GS  ++  +T ++ +       P      +    + E  
Sbjct: 54  NRSEEQFRQIFMKTGVVSQASGSAYIEIENTKVICSVHGPRASPK-TELFESAKFSCELK 112

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
               +       E +   +  + +++   + +++   + L       I +   V+  DGG
Sbjct: 113 FASFA----RPGERIDYMESAKEKDLSINLRQSIIGAIRLEKYPKTVIDVYVMVLNDDGG 168

Query: 125 TRTAAITGAWVALHDCLQHMEDCSN------------KFQLSQVLKGHVAAISCGMLCGY 172
              AAIT A +AL D    M D  +                +    G+ ++ +   +   
Sbjct: 169 VLVAAITAASMALADAGVEMYDMVSACSSICIRNQSISNGSNGSGSGNGSSGAAPKVQSS 228

Query: 173 PIVDLDYGEDSTIDVDANFV---MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
            ++D    E+ + D     V   M     I ++  + E    S ++    ++L  D    
Sbjct: 229 ILLDPTLQEEESKDSLGCVVVAKMPSLNEITQIIQTGE---LSYNNTIDGIDLCIDGCDK 285

Query: 230 LIKLQKDVISNEV 242
           +  + K  + + +
Sbjct: 286 IYSIMKQNLISSL 298


>gi|302834702|ref|XP_002948913.1| hypothetical protein VOLCADRAFT_89262 [Volvox carteri f.
           nagariensis]
 gi|300265658|gb|EFJ49848.1| hypothetical protein VOLCADRAFT_89262 [Volvox carteri f.
           nagariensis]
          Length = 238

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 80/240 (33%), Gaps = 26/240 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   + R + +  RV   A+GS  V+FG T ++       +  + +  T  G +  
Sbjct: 13  RADGRGLEEFRTVFIKTRVLSQAKGSAYVEFGTTKVMVGVFGPRQSEVKLGFTDTGRLNC 72

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQ-EIQRM--IGRALRSVVDLSALGSRQIIIDCDV 118
           E  +   ++    K         G++Q E      + +AL   V L         +   +
Sbjct: 73  EVRLTSFASHKLAK--------SGQTQLESSAAQGLQQALEPSVQLDKFPKAVFDVSAMI 124

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ++A G      IT A VAL D    + D              V A+      G  ++D  
Sbjct: 125 LEAGGSDLAVLITAASVALADAGVELYDL-------------VPAVQVSKQRGLLLLDPS 171

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             E    +      +     + EV     R  ++       L LA      L    ++ +
Sbjct: 172 LEESGAEEGGMLVGLMP--ELNEVTALNVRGLWADSEMQEGLELALGGCGQLKAAMREAL 229


>gi|330952126|gb|EGH52386.1| ribonuclease PH [Pseudomonas syringae Cit 7]
          Length = 92

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 50/68 (73%)

Query: 2  RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
          R SGR  +Q+R I +TR  +K+AEGS LV+FGDT ++ T ++E  VP +++    GW+TA
Sbjct: 25 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGVPRFLKGQGQGWLTA 84

Query: 62 EYGMLPRS 69
          EYGMLPR+
Sbjct: 85 EYGMLPRA 92


>gi|39977801|ref|XP_370288.1| hypothetical protein MGG_06785 [Magnaporthe oryzae 70-15]
 gi|145013689|gb|EDJ98330.1| hypothetical protein MGG_06785 [Magnaporthe oryzae 70-15]
          Length = 280

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 88/258 (34%), Gaps = 29/258 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIR------- 52
           +R+ GR+ N++R      R    A+GS  ++ G T ++   T   E  P   R       
Sbjct: 13  LRVDGRRWNELRRCHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEAAPGQRRTGVNITA 72

Query: 53  ---------NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD 103
                     +K   +     +   S+ +R KR    GR   R QE+Q  +  AL + + 
Sbjct: 73  TATGGGQGAQSKEAEVVVSIVVAGFSSVDRKKR----GRGDKRIQELQATVSHALSATLH 128

Query: 104 LSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA 163
                   I     V+  DG    A I  A +A  D    M D               A 
Sbjct: 129 THLFQHSTITFSLHVLSQDGSLLAALINAATLAAVDAGIPMADYVVACSAGSTSSYAAAD 188

Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
            S       P++DL+  E++ +       +  +  +V +   +            ML +A
Sbjct: 189 ESA-----DPLLDLNQQEETELPGLTAATLGATDRVVVLSCESRVQA---SRLEGMLAVA 240

Query: 224 KDRIADLIKLQKDVISNE 241
            D    + ++   V+   
Sbjct: 241 VDGCKQVREILDRVVKER 258


>gi|330817796|ref|YP_004361501.1| Polyribonucleotide nucleotidyltransferase [Burkholderia gladioli
           BSR3]
 gi|327370189|gb|AEA61545.1| Polyribonucleotide nucleotidyltransferase [Burkholderia gladioli
           BSR3]
          Length = 712

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 97/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRSGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREVGHG----RLAKRALVACLPSAEEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 489 LGDEDHLGDMDFKVAGTEAG-VTALQMDIKIQGITKEIMQVALEQAKEGRLHILGKMKGA 547

Query: 238 ISN 240
           +S 
Sbjct: 548 VSG 550



 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 75/232 (32%), Gaps = 34/232 (14%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    +++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 17  KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYLEKTYSAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR         R+I R LR +         Q++I    I  +     
Sbjct: 77  ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSINPEVPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYIDSQYVLNPTREQIKASSL 177

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232
           D     T+   ++     +E     +D            + +A D I +L++
Sbjct: 178 DLVVAGTERAVLMV---ESEAQQLPEDVMLGAVVFGHEQMQVAIDAIHELVR 226


>gi|254468592|ref|ZP_05081998.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium
           KB13]
 gi|207087402|gb|EDZ64685.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium
           KB13]
          Length = 710

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 98/247 (39%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R I ++  V     GS L   G+T  L  ATL       I +   G  T 
Sbjct: 320 RIDGRDTRTVRPIEISTSVLPRTHGSALFTRGETQALAVATLGTPRDAQIIDALQGEYTD 379

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  +   R+ G      R+  RAL +V+         I +  +
Sbjct: 380 RFMLHYNFPPFSTGETGRVGSPKRREIGHG----RLAKRALLAVLPEQEDFDYTIRLVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           +++++G +  A++ G  +A+ D                 LK HVA I+ G++        
Sbjct: 436 IMESNGSSSMASVCGGCMAMLDAGV-------------PLKSHVAGIAMGLIKEDNRVAI 482

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +++G I  +Q   +    + +     L  AK+    ++ L
Sbjct: 483 LTDILGDEDHLGDMDFKVAGSENG-ITALQMDIKIDGITTEIMQVALKQAKEGREHILDL 541

Query: 234 QKDVISN 240
            K  + +
Sbjct: 542 MKKALKS 548



 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 79/226 (34%), Gaps = 27/226 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
           E+ L    V++ A+G+ +V +G+T +L T      ++E    +     +   T   G +P
Sbjct: 19  ELKLETGEVARQADGAVMVSYGETVVLVTVVGNQNVKEGQDFFPLTVDYQEKTYAAGKIP 78

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR       + R+I R LR +         QI+       ++     
Sbjct: 79  ---GGFFKRE---GRPSENEILVCRLIDRPLRPLFPKGFYNDVQIVATVLSSDSEIDADI 132

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AI GA  AL                     G + A   G + G  +++    +    ++
Sbjct: 133 PAIIGASAALSISGI-------------PFYGPIGATKVGYVDGEYVINPTKTQLQESEL 179

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           D     T    ++     +E    S+      +        D+IKL
Sbjct: 180 DLVVAGTKDAVLMV---ESEAKELSEKVMLDAVLAGHKAAKDVIKL 222


>gi|320355005|ref|YP_004196344.1| polyribonucleotide nucleotidyltransferase [Desulfobulbus
           propionicus DSM 2032]
 gi|320123507|gb|ADW19053.1| polyribonucleotide nucleotidyltransferase [Desulfobulbus
           propionicus DSM 2032]
          Length = 695

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 88/249 (35%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPM--WIRNTKH 56
           MRL GR    +R IS    +   A GS L   G+T   ++ T   E        +    +
Sbjct: 311 MRLDGRSFEDVRPISCEVGILPRAHGSALFTRGETQALVICTLGSERDEQHLEGLGGDVY 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P   G        S R  G       +  R + +V+  +      + +  
Sbjct: 371 RRFMLHYNFPPFCVGEVRPLRGPSRRDIGHGT----LARRGIEAVLPANDSFPYTLRVVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A + G  +AL D                 +K  V+ ++ G++       
Sbjct: 427 EVLESNGSSSMATVCGGSLALMDAGV-------------PVKAPVSGVAMGLIKEGDQVV 473

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D   V T  G I  +Q   +     +      L  AK     +++
Sbjct: 474 VLTDILGDEDHLGDMDFKVVGTRQG-ITGLQMDIKIEGVDRGIMNQALAQAKKGRIHILE 532

Query: 233 LQKDVISNE 241
             +  +S+ 
Sbjct: 533 KMEGALSSP 541



 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 81/228 (35%), Gaps = 27/228 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66
           R I+       K A GS +V  GDT +L T   E +     ++     +T EY       
Sbjct: 12  RTIAFETGKMAKQANGSVVVSSGDTKVLVTVVAESE----SKDMGFLPLTIEYQERMYAA 67

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
            R  G+  +RE   GR   +     R+I R LR +         Q+I        +    
Sbjct: 68  GRIPGSYFRREI--GRPSEKEVLTCRLIDRPLRPLFPDGYSCETQLIATVFSADQEFDPD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA +AL                     G VAA   G + G  +++    +     
Sbjct: 126 ILAMNGASMAL-------------MLSDIPFAGPVAAARVGYVDGQYVLNPSKKQLEKSQ 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           ++     T S  +V V+G A     ++D     +  A   I  LI LQ
Sbjct: 173 INLVVAGTRSA-VVMVEGKASE--MAEDTVLEAIFFAHAGIQPLIDLQ 217


>gi|190406796|gb|EDV10063.1| exosome complex exonuclease RRP41 [Saccharomyces cerevisiae
           RM11-1a]
          Length = 246

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 23/244 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIRNTK--HG 57
           +RL GR+ N++R    +     +A +GS  ++ G+  ++T      K P           
Sbjct: 12  LRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGP-KEPRLKSQMDTSKA 70

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +     +   S   R K    S +   R  EIQ  + R     V L+      I I+  
Sbjct: 71  LLNVSVNITKFSKFERSK---SSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIH 127

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V++ DGG   + I G  +AL D    M D             +++ IS G+    P++D 
Sbjct: 128 VLEQDGGIMGSLINGITLALIDAGISMFD-------------YISGISVGLYDTTPLLDT 174

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +  E++ +      V+  S  +  +           D    +L +       +  L  + 
Sbjct: 175 NSLEENAMSTVTLGVVGKSEKLSLL---LVEDKIPLDRLENVLAIGIAGAHRVRDLMDEE 231

Query: 238 ISNE 241
           +   
Sbjct: 232 LRKH 235


>gi|308513305|ref|NP_952644.3| polynucleotide phosphorylase/polyadenylase [Geobacter
           sulfurreducens PCA]
 gi|81702393|sp|Q74CS9|PNP_GEOSL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|39983574|gb|AAR34967.1| polyribonucleotide nucleotidyltransferase [Geobacter sulfurreducens
           PCA]
          Length = 697

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 96/246 (39%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R IS+   +   A GS L   G+T  L  +TL   +     ++ +G    
Sbjct: 313 RIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVASTLGTSIDEQRIDSLYGETRK 372

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R A   R+ G       +  RAL  VV         I I  D
Sbjct: 373 RFLLHYNFPPFSVGETSFRLAPGRREIGHGM----LAERALERVVPKHEDFPYTIRIVSD 428

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           +++++G +  A + G  +A+ D                 +K  VA I+ G++    G  I
Sbjct: 429 ILESNGSSSMATVCGGALAMMDAGV-------------PIKAPVAGIAMGLIKEGEGIAI 475

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G +  +Q   +    +++     L  A+D    ++  
Sbjct: 476 LSDILGDEDHLGDMDFKVAGTEAG-VTAIQMDIKITGVTREIMEKALLQARDGRLHILGK 534

Query: 234 QKDVIS 239
               I+
Sbjct: 535 MNQAIA 540



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 79/230 (34%), Gaps = 27/230 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R I++     +K A G+ +V  GDT +L TA    +  E    +     +       G +
Sbjct: 13  RTITIATGKWAKQASGAVVVSCGDTVVLVTAVATKSAREGQDFFPLTVNYQEKAYAGGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR         R I R +R +   S L   QI+        D    
Sbjct: 73  P---GGFFKRE---GRPSDNETLTSRFIDRPIRPLFPESFLNDTQIMATVVSADQDNDPG 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                     G +A +  G + G  + +    +    D
Sbjct: 127 ILAMIGASAAL-------------EVSDIPFLGPIAGVKVGRVDGQFVCNPTVEQLEKSD 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           ++   V      ++ V+G A  A  S+      +      +  +I+ Q D
Sbjct: 174 LEI-VVAASRDAVIMVEGGAAEA--SEKDVLEAIFFGHAAVQPIIEAQTD 220


>gi|6321634|ref|NP_011711.1| Ski6p [Saccharomyces cerevisiae S288c]
 gi|1176073|sp|P46948|RRP41_YEAST RecName: Full=Exosome complex component SKI6; AltName:
           Full=Extracellular mutant protein 20; AltName:
           Full=Ribosomal RNA-processing protein 41; AltName:
           Full=Superkiller protein 6
 gi|791127|emb|CAA58018.1| G7587 [Saccharomyces cerevisiae]
 gi|1323347|emb|CAA97221.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|45270908|gb|AAS56835.1| YGR195W [Saccharomyces cerevisiae]
 gi|151943471|gb|EDN61782.1| superkiller [Saccharomyces cerevisiae YJM789]
 gi|207345003|gb|EDZ71963.1| YGR195Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256271491|gb|EEU06540.1| Ski6p [Saccharomyces cerevisiae JAY291]
 gi|259146697|emb|CAY79954.1| Ski6p [Saccharomyces cerevisiae EC1118]
 gi|285812388|tpg|DAA08288.1| TPA: Ski6p [Saccharomyces cerevisiae S288c]
 gi|323304789|gb|EGA58548.1| Ski6p [Saccharomyces cerevisiae FostersB]
 gi|323333367|gb|EGA74763.1| Ski6p [Saccharomyces cerevisiae AWRI796]
 gi|323337488|gb|EGA78736.1| Ski6p [Saccharomyces cerevisiae Vin13]
 gi|323348458|gb|EGA82703.1| Ski6p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323354862|gb|EGA86695.1| Ski6p [Saccharomyces cerevisiae VL3]
          Length = 246

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 23/244 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIRNTK--HG 57
           +RL GR+ N++R    +     +A +GS  ++ G+  ++T      K P           
Sbjct: 12  LRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGP-KEPRLKSQMDTSKA 70

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +     +   S   R K    S +   R  EIQ  + R     V L+      I I+  
Sbjct: 71  LLNVSVNITKFSKFERSK---SSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIH 127

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V++ DGG   + I G  +AL D    M D             +++ IS G+    P++D 
Sbjct: 128 VLEQDGGIMGSLINGITLALIDAGISMFD-------------YISGISVGLYDTTPLLDT 174

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +  E++ +      V+  S  +  +           D    +L +       +  L  + 
Sbjct: 175 NSLEENAMSTVTLGVVGKSEKLSLL---LVEDKIPLDRLENVLAIGIAGAHRVRDLMDEE 231

Query: 238 ISNE 241
           +   
Sbjct: 232 LRKH 235


>gi|302760867|ref|XP_002963856.1| hypothetical protein SELMODRAFT_80529 [Selaginella moellendorffii]
 gi|300169124|gb|EFJ35727.1| hypothetical protein SELMODRAFT_80529 [Selaginella moellendorffii]
          Length = 250

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 85/240 (35%), Gaps = 21/240 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR     R   L     + A GS   + GDT ++ +     +       +  G +  
Sbjct: 27  RIDGRHAQMCRAAFLRTGAVRAAAGSAYAESGDTKVIVSVFGPRESKKAEAFSDAGRLNC 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
                  +T  R K     G      +++  M+ +++   VDL       + +   V+Q+
Sbjct: 87  NVKYCSFATPVRGK----MGAANAEERDLSSMLYKSVVGAVDLRTFPKTTVDVFALVLQS 142

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
            GG     +T A +AL D    + D              VAA+S   + G  ++D    E
Sbjct: 143 GGGDLPVIVTCASLALADAGIVLYDL-------------VAAVSVSSIQGQVLLDPSTSE 189

Query: 182 DSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ++  D       M     I +V  + E   +S       L+L  D  A +  + +  +  
Sbjct: 190 ENCEDGSLMVAYMPSRKEITQVTMTGE---WSSSRASESLDLCLDACAKIGDVMRSCLKE 246


>gi|146329836|ref|YP_001209934.1| polynucleotide phosphorylase/polyadenylase [Dichelobacter nodosus
           VCS1703A]
 gi|187610297|sp|A5EXU0|PNP_DICNV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146233306|gb|ABQ14284.1| polyribonucleotide nucleotidyltransferase [Dichelobacter nodosus
           VCS1703A]
          Length = 693

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 99/246 (40%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R I++   V   A GS L   G+T  L  ATL       + +T  G +  
Sbjct: 315 RIDGRDTKTVRPITIHTSVLPRAHGSALFTRGETQALVVATLGTGRDAQLLDTLDGEVRD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y  LP S G   +  +   R+ G      R+  R L +V+ L       I +  +
Sbjct: 375 NFMLHYNFLPFSVGEIGRIGSPKRREIGHG----RLARRGLSAVLPLEEDFPYTIRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G+ +AL D                 ++  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGSSLALMDAGV-------------PVQTPVAGIAMGLIKEGDEFAI 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G +  +Q   +    +++     L+ A +    ++++
Sbjct: 478 LTDILGDEDHLGDMDFKVAGSATG-VTALQMDIKINGITEEIMRQALSQAHEGRLHILEV 536

Query: 234 QKDVIS 239
               I+
Sbjct: 537 MNQAIA 542



 Score = 71.7 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 72/213 (33%), Gaps = 27/213 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
           +++L    +++ A+G+ +V   DT +L T     T+ E    +     +       G +P
Sbjct: 13  QVTLETGEIARQADGAVIVNMDDTIVLVTVVANKTVAEGQDFFPLTVDYQEKNYAAGKIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR       I R+I R +R +     L   QII        +     
Sbjct: 73  ---GGFFKRE---GRPSEEETLISRLIDRPIRPLFADGFLNEVQIIATVLSYNPEVSPDI 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            +I GA  AL                     G +AA   G +    +++          +
Sbjct: 127 PSIIGASAAL-------------KLSGLPFNGPIAAARVGYVNDAYVLNPSPKALKNSRL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           D     T+S  ++     +E    S+      +
Sbjct: 174 DLVVAGTESAVLMV---ESEADQLSEAVMLEAV 203


>gi|266618485|pdb|2WP8|B Chain B, Yeast Rrp44 Nuclease
          Length = 246

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 23/244 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIRNTK--HG 57
           +RL GR+ N++R    +     +A +GS  ++ G+  ++T      K P           
Sbjct: 12  LRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGP-KEPRLKSQMDTSKA 70

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +     +   S   R K    S +   R  EIQ  + R     V L+      I I+  
Sbjct: 71  LLNVSVNINKFSKFERSK---SSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIH 127

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V++ DGG   + I G  +AL D    M D             +++ IS G+    P++D 
Sbjct: 128 VLEQDGGIMGSLINGITLALIDAGISMFD-------------YISGISVGLYDTTPLLDT 174

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +  E++ +      V+  S  +  +           D    +L +       +  L  + 
Sbjct: 175 NSLEENAMSTVTLGVVGKSEKLSLL---LVEDKIPLDRLENVLAIGIAGAHRVRDLMDEE 231

Query: 238 ISNE 241
           +   
Sbjct: 232 LRKH 235


>gi|221211731|ref|ZP_03584710.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD1]
 gi|221169092|gb|EEE01560.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD1]
          Length = 713

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 95/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 320 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +  +      I +  +
Sbjct: 380 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSAEEFGYSIRVVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 436 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 486

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++    + 
Sbjct: 487 LGDEDHLGDMDFKVAGTAQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTEA 545

Query: 238 ISN 240
           ++ 
Sbjct: 546 VAG 548



 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 77/234 (32%), Gaps = 38/234 (16%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    +++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 15  KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR         R+I R LR +         Q++I    +  +     
Sbjct: 75  ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +  +  +
Sbjct: 129 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNDQYVLNPTREQLKSSRL 175

Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++ V+  A++           F  +     ++     I +L++
Sbjct: 176 DLVVAGTERA-VLMVESEADQLPEEVMLGAVVFGHEQMQTAID----AIHELVR 224


>gi|161524200|ref|YP_001579212.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           multivorans ATCC 17616]
 gi|189351043|ref|YP_001946671.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           multivorans ATCC 17616]
 gi|226702628|sp|A9AJP0|PNP_BURM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|160341629|gb|ABX14715.1| Polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           ATCC 17616]
 gi|189335065|dbj|BAG44135.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           ATCC 17616]
          Length = 715

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 95/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSAEEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++    + 
Sbjct: 489 LGDEDHLGDMDFKVAGTAQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTEA 547

Query: 238 ISN 240
           ++ 
Sbjct: 548 VAG 550



 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 77/234 (32%), Gaps = 38/234 (16%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    +++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 17  KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR         R+I R LR +         Q++I    +  +     
Sbjct: 77  ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +  +  +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNDQYVLNPTREQLKSSRL 177

Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++ V+  A++           F  +     ++     I +L++
Sbjct: 178 DLVVAGTERA-VLMVESEADQLPEEVMLGAVVFGHEQMQTAID----AIHELVR 226


>gi|73540660|ref|YP_295180.1| polynucleotide phosphorylase/polyadenylase [Ralstonia eutropha
           JMP134]
 gi|123625489|sp|Q473U7|PNP_RALEJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|72118073|gb|AAZ60336.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ralstonia eutropha
           JMP134]
          Length = 728

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 98/242 (40%), Gaps = 18/242 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L  ATL    +E++   +      
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL  V+      +  I +  +
Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPKDDEFAYTIRLVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    ++       +  +L+G+  A+         + D+
Sbjct: 433 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAV---------LTDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     TD+G I  +Q   +    +++     L  AK+    ++   +  
Sbjct: 484 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGAMQGA 542

Query: 238 IS 239
           + 
Sbjct: 543 MG 544



 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 78/232 (33%), Gaps = 31/232 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           + +    +++ A G+ +V   DT +L T     + +     +     +   T   G +P 
Sbjct: 18  VRMETGEIARQAGGAVIVDVEDTVVLATVVAAKSPKPGQDFFPLTVDYIEKTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R LR +         Q+++    +  +      
Sbjct: 77  --GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVVHVVSLNPEIPADIP 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G V A   G   G  +++    + +T D+D
Sbjct: 132 ALIGASAALAVSGI-------------PFNGPVGAARIGYKDGQYLLNPTRSQMATSDLD 178

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
                T+   ++     +E    S+D     +    +     I  +  L ++
Sbjct: 179 LVVAGTERAVLMV---ESEANQLSEDVMLGAVVYGHEQMQIAINAIHDLVRE 227


>gi|221199652|ref|ZP_03572696.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD2M]
 gi|221205448|ref|ZP_03578463.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD2]
 gi|221174286|gb|EEE06718.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD2]
 gi|221180937|gb|EEE13340.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
           CGD2M]
          Length = 715

 Score =  125 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 95/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSAEEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++    + 
Sbjct: 489 LGDEDHLGDMDFKVAGTAQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTEA 547

Query: 238 ISN 240
           ++ 
Sbjct: 548 VAG 550



 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 75/233 (32%), Gaps = 36/233 (15%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    +++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 17  KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR         R+I R LR +         Q++I    +  +     
Sbjct: 77  ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +  +  +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNDQYVLNPTREQLKSSRL 177

Query: 188 DANFVMTDSGHIV---EVQGSAER-----ATFSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++   E    +E        F  +     ++     I +L++
Sbjct: 178 DLVVAGTERAVLMVESEADQLSEEVMLGAVVFGHEQMQTAID----AIHELVR 226


>gi|312796906|ref|YP_004029828.1| Polyribonucleotide nucleotidyltransferase / Polynucleotide
           adenylyltransferase [Burkholderia rhizoxinica HKI 454]
 gi|312168681|emb|CBW75684.1| Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) /
           Polynucleotide adenylyltransferase (EC 2.7.7.19)
           [Burkholderia rhizoxinica HKI 454]
          Length = 768

 Score =  125 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 93/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 366 RIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQALVVATLGTKGDEQIIDAIEGEYRE 425

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  R+L   +         I +  +
Sbjct: 426 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRSLVPCLPGDDEFGYTIRVVSE 481

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 482 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 532

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  A++    ++      
Sbjct: 533 LGDEDHLGDMDFKVAGTAQG-VTALQMDIKIQGITKEIMQVALAQAREGRLHILDKMTSA 591

Query: 238 ISN 240
           + +
Sbjct: 592 VPS 594



 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 76/232 (32%), Gaps = 34/232 (14%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
            + L    +++ A G+ +V   DT +L T     + +     +     +   T   G +P
Sbjct: 61  NVRLETGEIARQASGAVIVDVEDTVVLATVVAAKSAKPGQDFFPLTVDYIEKTYAAGKIP 120

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR       I R+I R LR +         Q++I    I  D     
Sbjct: 121 ---GGFFRRE---GRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSINPDIPADI 174

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G + A     +    +++    +     +
Sbjct: 175 PAMIGASAALAISGI-------------PFNGPIGAARVAYIDNQFVLNPTRSQSKASKL 221

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232
           D     T+   ++     +E     ++            + +A D I DL+K
Sbjct: 222 DLVVAGTERAVLMV---ESEADQLPEEVMLGAVVFGHEQMQVAIDAIHDLVK 270


>gi|297530556|ref|YP_003671831.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. C56-T3]
 gi|297253808|gb|ADI27254.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. C56-T3]
          Length = 723

 Score =  125 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    V     GS L   G T +L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGLDLEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G            G R      +  RAL  VV         I +  
Sbjct: 375 KRFMHHYNFPPFSVGE----TGPMRGPGRREIGHGALGERALEPVVPSEREFPYTIRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKNDDHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  A+    +++ 
Sbjct: 478 ILTDIQGIEDHLGDMDFKVAGTRKG-VTALQMDIKIKGLTREILEEALMQARKGRLEILD 536

Query: 233 LQKDVISNE 241
                +S  
Sbjct: 537 HMMQTLSEP 545



 Score = 78.2 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 91/233 (39%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L+TAT   +   V  +     +       G +P
Sbjct: 15  RPLIVETGELAKQANGAVLVRYGDTVVLSTATASREAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++  + R+I R +R +         Q++     +  D     
Sbjct: 75  ---GGFIKRE---GRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEV 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ VAL                    +G +A +  G + G  +++    +    D+
Sbjct: 129 AALIGSSVAL-------------TISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 T    I  V+  A+     ++     +    + +  LI  Q+++ + 
Sbjct: 176 HLVVAGTKDA-INMVEAGADEVP--EEVILEAIMFGHEEVKRLIAFQEEIAAQ 225


>gi|261419469|ref|YP_003253151.1| polynucleotide phosphorylase/polyadenylase [Geobacillus sp.
           Y412MC61]
 gi|319766284|ref|YP_004131785.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp.
           Y412MC52]
 gi|261375926|gb|ACX78669.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp.
           Y412MC61]
 gi|317111150|gb|ADU93642.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp.
           Y412MC52]
          Length = 723

 Score =  125 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    V     GS L   G T +L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGLDLEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G            G R      +  RAL  VV         I +  
Sbjct: 375 KRFMHHYNFPPFSVGE----TGPMRGPGRREIGHGALGERALEPVVPSEREFPYTIRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKNDDHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  A+    +++ 
Sbjct: 478 ILTDIQGIEDHLGDMDFKVAGTRKG-VTALQMDIKIKGLTREILEEALMQARKGRLEILD 536

Query: 233 LQKDVISNE 241
                +S  
Sbjct: 537 HMMQTLSEP 545



 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 91/233 (39%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L+TAT   +   V  +     +       G +P
Sbjct: 15  RPLIVETGELAKQANGAALVRYGDTVVLSTATASREAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++  + R+I R +R +         Q++     +  D     
Sbjct: 75  ---GGFIKRE---GRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEV 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ VAL                    +G +A +  G + G  +++    +    D+
Sbjct: 129 AALIGSSVAL-------------TISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 T    I  V+  A+     ++     +    + +  LI  Q+++ + 
Sbjct: 176 HLVVAGTKDA-INMVEAGADEVP--EEVILEAIMFGHEEVKRLIAFQEEIAAQ 225


>gi|56419804|ref|YP_147122.1| polynucleotide phosphorylase/polyadenylase [Geobacillus
           kaustophilus HTA426]
 gi|81347597|sp|Q5L0I2|PNP_GEOKA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56379646|dbj|BAD75554.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Geobacillus kaustophilus HTA426]
          Length = 723

 Score =  125 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    V     GS L   G T +L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGLDLEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G            G R      +  RAL  VV         I +  
Sbjct: 375 KRFMHHYNFPPFSVGE----TGPMRGPGRREIGHGALGERALEPVVPSEREFPYTIRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKNDDHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  A+    +++ 
Sbjct: 478 ILTDIQGIEDHLGDMDFKVAGTRKG-VTALQMDIKIKGLTREILEEALMQARKGRLEILD 536

Query: 233 LQKDVISNE 241
                +S  
Sbjct: 537 HMMQTLSEP 545



 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 91/233 (39%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L+TAT   +   V  +     +       G +P
Sbjct: 15  RPLIIETGELAKQANGAALVRYGDTVVLSTATASREAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++  + R+I R +R +         Q++     +  D     
Sbjct: 75  ---GGFIKRE---GRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEV 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ VAL                    +G +A +  G + G  +++    +    D+
Sbjct: 129 AALIGSSVAL-------------TISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 T    I  V+  A+     ++     +    + +  LI  Q+++ + 
Sbjct: 176 HLVVAGTKDA-INMVEAGADEVP--EEVILEAIMFGHEEVKRLIAFQEEIAAQ 225


>gi|94309868|ref|YP_583078.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus
           metallidurans CH34]
 gi|187611276|sp|Q1LPW7|PNP_RALME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|93353720|gb|ABF07809.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus
           metallidurans CH34]
          Length = 725

 Score =  125 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 98/242 (40%), Gaps = 18/242 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L  ATL    +E++   +      
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL  V+      +  I +  +
Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPKDDEFAYTIRLVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    ++       +  +L+G+  A+         + D+
Sbjct: 433 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAV---------LTDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     TD+G I  +Q   +    +++     L  A++    ++   +  
Sbjct: 484 LGDEDHLGDMDFKVAGTDAG-ITALQMDIKVQGITKEIMQVALAQAREGRMHILGAMQGA 542

Query: 238 IS 239
           + 
Sbjct: 543 MG 544



 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 77/232 (33%), Gaps = 31/232 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           + +    +++ A G+ +V   DT +L T     + +     +     +   T   G +P 
Sbjct: 18  VRMETGEIARQASGAVIVDVEDTVVLATVVAAKSPKAGQDFFPLTVDYIEKTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R LR +         Q++I   V+         
Sbjct: 77  --GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVI--HVL--------- 120

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           +I     A  D    +   +          G V A   G   G  +++    + +  D+D
Sbjct: 121 SINPEIPA--DIPALIASSAALAVSGIPFNGPVGAARVGYKDGQYLLNPTRAQIAASDLD 178

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
                T+   ++     +E    S+D     +    +     I  +  L ++
Sbjct: 179 LVVAGTERAVLMV---ESEAHQLSEDVMLGAVVYGHEQMQIAINAIHDLVRE 227


>gi|253995588|ref|YP_003047652.1| polynucleotide phosphorylase/polyadenylase [Methylotenera mobilis
           JLW8]
 gi|253982267|gb|ACT47125.1| 3' exoribonuclease [Methylotenera mobilis JLW8]
          Length = 709

 Score =  125 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 94/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R IS+   V     GS L   G+T  L  ATL       I +   G    
Sbjct: 316 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDALQGEYAD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +      R+ G      R+  RAL + +         + +  +
Sbjct: 376 RFMLHYNMPPYATGETGRVGTPKRREIGHG----RLAKRALVAALPAKEDFDYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M++      +  + +G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLALMDAGVPMKNHVAGIAMGLIKEGNRVAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   +    +       L  AK+  A ++ + K  
Sbjct: 483 LGDEDHLGDMDFKVAGTEDG-ITALQMDIKITGITAQIMQVALAQAKEGRAHILGIMKQA 541

Query: 238 ISN 240
           +S 
Sbjct: 542 VSG 544



 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 86/229 (37%), Gaps = 35/229 (15%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
           ++L    +S+ A+ + +V +GDT +L   T + +V      +     +   T   G +P 
Sbjct: 16  LTLETGEISRQADAAVMVSYGDTVVLVAVTSKREVKAGQDFFPLTVDYMEKTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV----IQADGG 124
             G   KRE   GR   +     R+I R LR +   +     Q++         I AD  
Sbjct: 75  --GGFFKRE---GRPSEKETLTSRLIDRPLRPLFPEAFYNEVQVVATVLSSDPEIDAD-- 127

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               AI GA  A+                     G + A   G +    +++    +   
Sbjct: 128 --IPAIIGASAAMSLSGI-------------PYYGPLGAARVGYINDEYVLNPTKAQLEE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
            ++D     T+S  ++ V+  +E    S++     +    +++  +IK+
Sbjct: 173 TELDLVVAATESA-VMMVE--SEAKELSEEVMLGAVVYGHEQMQAVIKM 218


>gi|257463538|ref|ZP_05627931.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium sp. D12]
          Length = 743

 Score =  125 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 94/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
           R+ GR   ++R +     V     GS L   G+T  L TATL  K    + +      + 
Sbjct: 360 RVDGRSTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKEDEQLVDNLEKEYYK 419

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G       +  RALR V+         I +  D
Sbjct: 420 KFYLHYNFPPYSVGETGRMGAPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSD 475

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  +AL                   +K HVA I+ G++        
Sbjct: 476 ITESNGSSSQASICGGSLALMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 522

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T SG I  +Q   +    +++     L+ A      ++++
Sbjct: 523 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALSQAHVARQQILEV 581

Query: 234 QKDVISNE 241
               IS+ 
Sbjct: 582 MNAAISSP 589



 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 80/234 (34%), Gaps = 29/234 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + ++   +++ + G+ ++++GDT LL+T        + V  +     +       G  
Sbjct: 50  RSLKVSTGKIARQSCGAIMIQYGDTVLLSTVNRSKEARKGVDFFPLTVDYIEKFYAAGKF 109

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE+   R    +  I R+I R +R +          I+             
Sbjct: 110 P---GGFNKRES---RPSTDATLIARLIDRPIRPMFPEGFTYDVHIVNTVFSFDEKNTPD 163

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              I  + +AL                     G VA +  G + G  +++    +     
Sbjct: 164 YLGIIASSLALS-------------ISDIPFLGPVAGVVVGYIDGEFVLNPTPEQLEKSL 210

Query: 187 VDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +D +   T    ++VE    A      ++     +  A + I  +   Q++ + 
Sbjct: 211 LDLSVAGTKEAVNMVE----AGAKELDEETMLKAILFAHENIKKICAFQEEFVK 260


>gi|186476768|ref|YP_001858238.1| polynucleotide phosphorylase/polyadenylase [Burkholderia phymatum
           STM815]
 gi|226702629|sp|B2JDN2|PNP_BURP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|184193227|gb|ACC71192.1| Polyribonucleotide nucleotidyltransferase [Burkholderia phymatum
           STM815]
          Length = 712

 Score =  125 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 94/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  AT     +E++   +      
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRD 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALAACLPSAEEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++      
Sbjct: 489 LGDEDHLGDMDFKVAGTADG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547

Query: 238 ISN 240
           +S 
Sbjct: 548 VSG 550



 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 76/233 (32%), Gaps = 38/233 (16%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           + +    +++ A G+ LV   DT +L T       +     +     +   T   G +P 
Sbjct: 18  VRMETGEIARQASGAVLVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYIEKTYSAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR       I R+I R LR +         Q++I    I  +      
Sbjct: 77  --GGFFRRE---GRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVMSINPEVPADIP 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G V A     +    +++    +     +D
Sbjct: 132 ALIGASAALA-------------VSGLPFNGPVGAARVAYINNEYVLNPTRSQIKGSRLD 178

Query: 189 ANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232
                T+   ++ V+  A++           F  +     ++     I +L++
Sbjct: 179 LVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 226


>gi|187479141|ref|YP_787166.1| polynucleotide phosphorylase/polyadenylase [Bordetella avium 197N]
 gi|123765982|sp|Q2KWI6|PNP_BORA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|115423728|emb|CAJ50278.1| polyribonucleotide nucleotidyltransferase [Bordetella avium 197N]
          Length = 718

 Score =  125 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 95/241 (39%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R IS+   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 320 RIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +      R+ G      R+  R+L  V+         I I  +
Sbjct: 380 RFMLHYNMPPFATGETGRIGVPKRREIGHG----RLAKRSLVPVLPKPEDFQYTIRIVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +A+ D    + D      +  +L+    A+         + D+
Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPITDHVAGVAMGLILENGKFAV---------LTDI 486

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   +    +++     L  A++    ++   ++ 
Sbjct: 487 LGDEDHLGDMDFKVAGTENG-ITALQMDIKIQGITKEIMQVALAQAREGRLHILGKMRES 545

Query: 238 I 238
           +
Sbjct: 546 L 546



 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 79/232 (34%), Gaps = 36/232 (15%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           + L    +++ A G+ LV   DT +L T       +     +     +   T   G +P 
Sbjct: 16  VVLETGEIARQASGAVLVSVEDTVVLATVVAAKKAKPGQDFFPLTVDYIEKTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+   +     R+I R LR +         Q++I    +  +      
Sbjct: 75  --GGFFKRE---GKPSEKETLTSRLIDRPLRPLFPEGFYNEVQVVIHTLSVNPEIDPDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A     + G  +++    +  +  +D
Sbjct: 130 AMIGASAALAISGI-------------PFNGPIGAARVAYVEGQYLLNPTASQLKSSKMD 176

Query: 189 ANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAMLNLAKDRIADLIK 232
                T++  ++   E Q  +E        F  +   A +N     I DL++
Sbjct: 177 LVVAGTENAVLMVESEAQQLSEEIMLGGVVFGHEQMQAAIN----AIHDLVR 224


>gi|46135695|ref|XP_389539.1| hypothetical protein FG09363.1 [Gibberella zeae PH-1]
          Length = 238

 Score =  125 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 71/187 (37%), Gaps = 13/187 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKH 56
           +R+ GR+ N++R +    R    A+GS  ++ G T ++   T   +              
Sbjct: 13  LRVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQQQRRGGQQAGRDM 72

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
             I     +   S+ +R KR    GR   R QEI+  I  AL S +      +  I I  
Sbjct: 73  AAINVNVVVAGFSSVDRKKR----GRNDKRIQEIETTIANALSSNLHTHLFPNSSISISL 128

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
            V+  DG    A I    +AL D    M D            G  +  + G     P++D
Sbjct: 129 HVLSQDGSLLAALINATTLALIDAGIPMSDYIAACTA-----GSTSTYAAGDDNADPLLD 183

Query: 177 LDYGEDS 183
           L+  E+ 
Sbjct: 184 LNNQEEQ 190


>gi|146104020|ref|XP_001469709.1| exosome complex exonuclease RRP41 [Leishmania infantum]
 gi|134074079|emb|CAM72821.1| putative exosome complex exonuclease rrp41 [Leishmania infantum
           JPCM5]
          Length = 246

 Score =  125 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 95/245 (38%), Gaps = 24/245 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           +RL GR+  + R + +        +GSC +  G + +        + +         G +
Sbjct: 13  LRLDGRRPLEARRMDIAFSTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLV 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           T E  +   +  NR        R+   S++I   + +  RSV+ LS   + QI I  +V+
Sbjct: 73  TCEVAVAAFAGENRR----NPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           Q DG  + A +  A +AL D    M D              V  I  G+L  + ++DL  
Sbjct: 129 QKDGNEKIACVNAACLALIDANVAMRDA-------------VCCIDAGILDEHMLIDLTN 175

Query: 180 GE--DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQKD 236
            E       + A F   D+ +I+ ++ ++       D    +L  A++    L +   + 
Sbjct: 176 DELRSQCPVIAAAFTGHDTRNIIWLETASR---LPPDSAARLLKCAEEGATKLFETAMRK 232

Query: 237 VISNE 241
            +   
Sbjct: 233 ALEEH 237


>gi|302389789|ref|YP_003825610.1| polyribonucleotide nucleotidyltransferase [Thermosediminibacter
           oceani DSM 16646]
 gi|302200417|gb|ADL07987.1| polyribonucleotide nucleotidyltransferase [Thermosediminibacter
           oceani DSM 16646]
          Length = 702

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 94/250 (37%), Gaps = 28/250 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+  ++R IS    +     GS L   G T +LT AT     + ++   +   + 
Sbjct: 310 IRPDGRKSTEIRPISCEVGILPRTHGSGLFTRGQTQVLTVATLGALGDVQILDGLELEES 369

Query: 57  GWITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                 Y   P STG  R+ R       G R      +  RAL  ++         I + 
Sbjct: 370 KRFMHHYNFPPYSTGETRMLRG-----PGRREIGHGALAERALEPMIPPEETFPYTIRLV 424

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V+ ++G T  A++ G+ +AL D                 +K  VA I+ G++      
Sbjct: 425 SEVLSSNGSTSMASVCGSTLALMDAGV-------------PIKAPVAGIAMGLIKQDDKV 471

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I  +Q   +      +     L  A++    ++
Sbjct: 472 TILSDIQGIEDFLGDMDFKVAGTSKG-ITAIQMDIKIKGIDAEILKKALEQAREGRLYIL 530

Query: 232 KLQKDVISNE 241
           +     IS+ 
Sbjct: 531 EKMLATISSP 540



 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 87/234 (37%), Gaps = 27/234 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R   +      + A G+ L ++GDT +L TAT      E V        +       G +
Sbjct: 11  RPFIIETGKLAQQANGAVLARYGDTVVLVTATASKEPREGVDFLPLTVDYEERLYAVGKI 70

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R LR +         QII     +       
Sbjct: 71  P---GGFIKRE---GKPSEKAILSARVIDRPLRPLFPKGFRNDIQIIATILSVDQGNTPD 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI GA +AL                    +G V A+S G++ G  I++    +     
Sbjct: 125 VVAINGASIALC-------------ISDIPFEGPVGAVSVGLVDGNFIINPTVEQYEKSR 171

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    I+ V+  A+    +++     +    + I  ++K Q+++I+ 
Sbjct: 172 LRLVVAGTKDA-ILMVEAGADE--VTEEEMINAILFGHEEIKKIVKFQEEIIAK 222


>gi|195952523|ref|YP_002120813.1| polynucleotide phosphorylase/polyadenylase [Hydrogenobaculum sp.
           Y04AAS1]
 gi|226702655|sp|B4U6R7|PNP_HYDS0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|195932135|gb|ACG56835.1| Polyribonucleotide nucleotidyltransferase [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 703

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 89/249 (35%), Gaps = 27/249 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTKH 56
           R+ GR+E  +R I++     +   GS +   G T  L T TL  K    +          
Sbjct: 310 RIDGRKETDIRPITIEMHPLERPHGSAVFTRGQTQALATVTLAPKDEAQLVETIFEGETF 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG          R+ G       +  RAL  ++         I +  
Sbjct: 370 KRFMLHYNFPPFSTGEARPWGPPRRREIGHG----ALAERALEPLLAKEEDFPYIIRVVS 425

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           D+++++G +  A +    +AL D    M             K HVA I+ G++       
Sbjct: 426 DILESNGSSSMATVCAGSLALFDAGVPM-------------KKHVAGIAMGLIKDGDNFV 472

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  VQ   +    S+D     LN AK+    ++ 
Sbjct: 473 ILTDILGDEDHLGDMDFKVAGTRDG-VTSVQMDIKIKGLSKDIMIKALNQAKEARMFILD 531

Query: 233 LQKDVISNE 241
              + I   
Sbjct: 532 KLYEAIPEP 540



 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 31/233 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS-- 69
            I +     +  A+ S L+  G T +L T  + E+    +       ++ +Y     +  
Sbjct: 12  PIYIEANKYAHQADSSILISQGGTKVLVTVCVSEEP---LCGIDFAPLSVDYRERSFAWG 68

Query: 70  --TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
              G  +KRE   G+   R   I R+I R LR ++    L    +++ C  + AD     
Sbjct: 69  KIPGGFIKRE---GKPTDREVLISRVIDRPLRPLMPKGFLNE--VVVTCLTLSADDKYDP 123

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AITGA  AL                S   +G +A +    + G  I++  Y +    
Sbjct: 124 DVLAITGASAALV-------------SSSVPFEGPIAGMRVCRVNGEFIINPTYEQRKNS 170

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D+D    ++    IV V+G A+    S       L    ++   LIK Q++++
Sbjct: 171 DMDIVMALSKDA-IVMVEGGAKEVEESV--LLDALFFGLEKGQTLIKAQEELV 220


>gi|55981108|ref|YP_144405.1| polynucleotide phosphorylase/polyadenylase [Thermus thermophilus
           HB8]
 gi|81364132|sp|Q5SJ75|PNP_THET8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|55772521|dbj|BAD70962.1| polynucleotide phosphorylase [Thermus thermophilus HB8]
          Length = 713

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 94/245 (38%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           R  GR    +R I +   V   A GS +   G+T +L T TL       I +     +  
Sbjct: 327 RADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLGTGRDEQILDDLGIDETE 386

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +   VS R+ G       +  RAL++V+         I +  D
Sbjct: 387 KFLVHYNFPPFSTGEVRRLRGVSRREVGHG----NLAKRALKAVMPKEEDFPYTIRVVGD 442

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           V++++G +  A +    +AL D                 ++  VA ++ G++        
Sbjct: 443 VLESNGSSSMATVCAGCLALMDAGV-------------PIRAPVAGVAMGLVWEENRAVI 489

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED+  D+D     T  G +  +Q   +     ++     L  A++    ++ L
Sbjct: 490 LTDILGLEDALGDMDFKVAGTRKG-VTALQMDNKVGGLPREVLKEALLQAREARLKILDL 548

Query: 234 QKDVI 238
            + V+
Sbjct: 549 MEAVL 553



 Score = 92.8 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 91/236 (38%), Gaps = 29/236 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + L     +K A GS LV++ DT +L TA   E             +T E+     + 
Sbjct: 20  RPLVLETGKYAKQASGSVLVRYADTVVLATAQASET----PVEADFLPLTVEFEERHYAV 75

Query: 71  ----GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
               G+ ++RE   GR G ++    RM  R +R +         QII+   V+ AD    
Sbjct: 76  GKIPGSFMRRE---GRPGEKAILSARMTDRPIRPLFPKGFRHEVQIIVT--VLSAD---- 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                       D L  +   +         +G +AA+  G++ G  +++    E     
Sbjct: 127 -------QKNPPDILGPIAASAALMLSDIPWEGPIAAVRVGLIGGSFVLNPTLQELEESQ 179

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           +D   V      I+ V+  AE     ++     L  A   +  +++LQ + ++ E+
Sbjct: 180 LDL-VVAGSKEAILMVE--AEAGEVDEETLVQALEFAHKEMQPILELQ-EAMAREL 231


>gi|145220228|ref|YP_001130937.1| polynucleotide phosphorylase/polyadenylase [Prosthecochloris
           vibrioformis DSM 265]
 gi|189037312|sp|A4SG26|PNP_PROVI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145206392|gb|ABP37435.1| Polyribonucleotide nucleotidyltransferase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 732

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 90/241 (37%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           RL GR  +Q+R IS+   V   A GS L   G+T  L   TL  K        + N+   
Sbjct: 332 RLDGRTLDQVRPISIDLGVIPRAHGSALFTRGETQALVAVTLGTKKDAQSVDTLTNSADK 391

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  V R   +GR   R      +  RA+R V          I I  +
Sbjct: 392 RFMLHYNFPPFSVGE-VGRLGTTGR---REIGHGNLAERAIRMVAPTEQEFPYTIRIVSE 447

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +++++G +  A++ G  +AL D    ++   +   +  + +G   A+         + D+
Sbjct: 448 ILESNGSSSMASVCGGTLALMDGGVPLKKAVSGIAMGLIKEGSEYAV---------LSDI 498

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I   Q   +            L  A+     ++   ++ 
Sbjct: 499 LGNEDHLGDMDFKVSGTRDG-ITACQMDIKIDGLDYHILETALEQARRGRFHILDKMEEA 557

Query: 238 I 238
           I
Sbjct: 558 I 558



 Score = 98.2 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 86/230 (37%), Gaps = 28/230 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVP-----MWIRNTKHGWITAEYGMLP 67
           IS+      K A+G+ +V+ GDT ++ T    +K P      +    ++       G  P
Sbjct: 15  ISIETGRMAKQADGATVVRMGDTMVIATVVSSKKTPSPNQDFFPLQVEYREKYYAAGKFP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KREA   R   +     R+I RALR +         Q+II+  VI +D     
Sbjct: 75  ---GGFFKREA---RPSEKEILSARLIDRALRPLFPTGYYYETQVIIN--VISSDQQN-D 125

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           A + G   A           +         +  ++ +  G + G  I++    E    D+
Sbjct: 126 ADVLGGLAA----------SAAIMVSDIPFENAMSEVRVGRVNGQFIINPTIDELEGSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           D +   T +G I  ++G  E    S+      +    + I  L  LQ  V
Sbjct: 176 DISIGGT-AGTICMLEG--EMKEISEAEMLEAIRFGHEAIKKLCALQDSV 222


>gi|317061093|ref|ZP_07925578.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D12]
 gi|313686769|gb|EFS23604.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D12]
          Length = 707

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 94/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
           R+ GR   ++R +     V     GS L   G+T  L TATL  K    + +      + 
Sbjct: 324 RVDGRSTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKEDEQLVDNLEKEYYK 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G       +  RALR V+         I +  D
Sbjct: 384 KFYLHYNFPPYSVGETGRMGAPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSD 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  +AL                   +K HVA I+ G++        
Sbjct: 440 ITESNGSSSQASICGGSLALMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 486

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T SG I  +Q   +    +++     L+ A      ++++
Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALSQAHVARQQILEV 545

Query: 234 QKDVISNE 241
               IS+ 
Sbjct: 546 MNAAISSP 553



 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 80/234 (34%), Gaps = 29/234 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + ++   +++ + G+ ++++GDT LL+T        + V  +     +       G  
Sbjct: 14  RSLKVSTGKIARQSCGAIMIQYGDTVLLSTVNRSKEARKGVDFFPLTVDYIEKFYAAGKF 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE+   R    +  I R+I R +R +          I+             
Sbjct: 74  P---GGFNKRES---RPSTDATLIARLIDRPIRPMFPEGFTYDVHIVNTVFSFDEKNTPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              I  + +AL                     G VA +  G + G  +++    +     
Sbjct: 128 YLGIIASSLALS-------------ISDIPFLGPVAGVVVGYIDGEFVLNPTPEQLEKSL 174

Query: 187 VDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +D +   T    ++VE    A      ++     +  A + I  +   Q++ + 
Sbjct: 175 LDLSVAGTKEAVNMVE----AGAKELDEETMLKAILFAHENIKKICAFQEEFVK 224


>gi|304316856|ref|YP_003852001.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778358|gb|ADL68917.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 700

 Score =  125 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 93/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKH 56
           +R+ GR  + +R I+    V     GS +   G T ++T ATL     + I     + + 
Sbjct: 311 IRVDGRGLDDIRPITCDIGVLPRTHGSAVFTRGQTQVMTVATLGPLGDIQILDGLGDEES 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G          R+ G       +  RAL  ++         I +  
Sbjct: 371 KRYMHHYNFPPFSVGETRPLRGPGRREIGHG----ALAERALEPMIPSEEEFPYTIRLVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY--- 172
           +V+ ++G T  A++ G+ +AL D                 +K  VA ++ G++  G    
Sbjct: 427 EVLSSNGSTSQASVCGSTLALMDAGV-------------PIKAPVAGVAMGLIKEGETVS 473

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T+ G I  +Q   + A   +D   A L  A+     ++ 
Sbjct: 474 ILTDIQGIEDFLGDMDFKVAGTEKG-ITAIQMDIKIAGIDRDILSAALEKARKGRLFILN 532

Query: 233 LQKDVISNE 241
              + I   
Sbjct: 533 KMLETIKEP 541



 Score = 85.1 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 77/213 (36%), Gaps = 26/213 (12%)

Query: 24  AEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           A GS LV++GDT +L TA       E V  +  +  +       G +P   G  +KRE  
Sbjct: 25  ANGSALVRYGDTVVLVTACASKEPREGVDFFPLSVDYEERLYSVGKIP---GGFIKRE-- 79

Query: 80  SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD 139
            G+   ++    R+I R +R +         Q+I     +  D      A+ G+ VAL  
Sbjct: 80  -GKPTEKAILTSRLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQPEIVAMIGSSVALS- 137

Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHI 199
                              G   ++S  ++ G  I++ D       D+      T    I
Sbjct: 138 ------------ISDIPFNGPTGSVSVALVDGKFIINPDLATREKSDLHLTVSGTKDA-I 184

Query: 200 VEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           + V+  A      ++     +  A + I  ++ 
Sbjct: 185 MMVEAGANEVP--EEVMLDAIMYAHEYIKKIVD 215


>gi|261332827|emb|CBH15822.1| RRP41p homologue, putative [Trypanosoma brucei gambiense DAL972]
          Length = 252

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 18/182 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59
           +RL GR+ N+ R ++L        +G C V  G +H+  T     +V   +        I
Sbjct: 13  LRLDGRRPNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLDGKYNEVTI 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           T +  +   + G R +      R    S++I   +    RSVV LS   + QI I  +V+
Sbjct: 73  TCDVVVAAFA-GERRR---EQQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICIEVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           + DG  + A I  A +AL D    M D              V   + G++ G+ +VDL  
Sbjct: 129 KQDGSDKAACINAACLALIDASIAMRDV-------------VYTQTVGLIEGFDVVDLTT 175

Query: 180 GE 181
            E
Sbjct: 176 EE 177


>gi|331000847|ref|ZP_08324493.1| polyribonucleotide nucleotidyltransferase [Parasutterella
           excrementihominis YIT 11859]
 gi|329570375|gb|EGG52108.1| polyribonucleotide nucleotidyltransferase [Parasutterella
           excrementihominis YIT 11859]
          Length = 735

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 93/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L   TL  K        +   +  
Sbjct: 333 RIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQALVVTTLGTKQDEQIVDGLTGEQRE 392

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL +V+         + +  +
Sbjct: 393 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALTAVLPNEEDFQYTMRVVSE 448

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  ++L D                 LK  VA ++ G++        
Sbjct: 449 ICESNGSSSMASVCGGCLSLLDAGV-------------PLKDFVAGVAMGLIKEGNKFAV 495

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     TD G +  +Q   +    S++     L  AK+    ++  
Sbjct: 496 LTDILGDEDHLGDMDFKVAGTDHG-VTALQMDIKIEGISKEIMQVALAQAKEGRMHILGK 554

Query: 234 QKDVISNE 241
             + +   
Sbjct: 555 MHEAVEGP 562



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 78/233 (33%), Gaps = 27/233 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
            + L    +++ A G+ +    DT +L T      ++     +     +   T   G +P
Sbjct: 28  NVRLETGEIARQASGAVICDMDDTVVLATVVAKKEIKPGQDFFPLTVDYIEKTYAAGRIP 87

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR   +     R+I R +R +         QIII    +  +     
Sbjct: 88  ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFFNEVQIIIHVLSVNPEVDPDI 141

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            ++  A  AL                     G +AA   G +    ++  +  +     +
Sbjct: 142 PSMIAASAALA-------------VSGVPFNGPIAAARVGYINNEYVLCPNLSQMKDSKL 188

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     T+   ++     +E    S++     +    +++  +I+   +++  
Sbjct: 189 DLVVAGTERAVLMV---ESEADQLSEEVMLGAVMFGHEKMQVVIEAIDELVEE 238


>gi|206890011|ref|YP_002249618.1| polyribonucleotide nucleotidyltransferase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|257096715|sp|B5YHN2|PNP_THEYD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|206741949|gb|ACI21006.1| polyribonucleotide nucleotidyltransferase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 710

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 94/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI- 59
           +R  GR+ +++R I+    +     GS L   G+T  L   TL         ++  G I 
Sbjct: 319 IRADGRKSDEIRPITCMIGILPRVHGSALFTRGETQALVATTLGTSEDEQKVDSLEGEIF 378

Query: 60  ---TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y  LP S G      A   R+ G       +  RAL  V+         I +  
Sbjct: 379 KTFMLHYNFLPFSVGEVKPLRAPGRREIGHGY----LAERALSYVIPSKDEFPYTIRVVS 434

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           D+++++G +  A + GA ++L D                 +K  VA ++ G++       
Sbjct: 435 DILESNGSSSMATVCGATLSLMDAGV-------------PIKAPVAGVAMGLIKEGDKTV 481

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T+ G I   Q   + +  S + F   L  AK     ++K
Sbjct: 482 VLTDILGMEDHYGDMDFKVAGTEKG-ITAFQMDVKISGISYEIFKKALKQAKQARLFILK 540

Query: 233 LQKDVISNE 241
              + IS  
Sbjct: 541 KMAETISEP 549



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 79/221 (35%), Gaps = 26/221 (11%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
            +K   GS L K+GDT++L T     T +E +        +       G +P   G   K
Sbjct: 19  FAKQTNGSVLAKYGDTYVLCTVVAEKTPKEGLDFVPLTIDYQEKAYSAGKIP---GGFFK 75

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE   G+   R   + R+I R +R +         Q I        +      +I G   
Sbjct: 76  RE---GKPTDREILVSRLIDRPVRPLFPDGFNYETQGIASVLSYGDENIADILSIIGISS 132

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
           AL                     G VAA+  GM+    I++ D  E     ++     T+
Sbjct: 133 AL-------------TISDIPFNGPVAAVRVGMVEEEFILNPDNDEAEKSILNLVVAGTE 179

Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              +  V+G A  A  S++     L  A   I  +I LQK 
Sbjct: 180 EA-VTMVEGGA--AECSEETLVEALKFAHTHIKKIIALQKK 217


>gi|268316873|ref|YP_003290592.1| Polyribonucleotide nucleotidyltransferase [Rhodothermus marinus DSM
           4252]
 gi|262334407|gb|ACY48204.1| Polyribonucleotide nucleotidyltransferase [Rhodothermus marinus DSM
           4252]
          Length = 772

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 90/243 (37%), Gaps = 20/243 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           R+ GR  +++R I +         GS +   G+T +L + TL     + + +        
Sbjct: 332 RIDGRSLDEIRPIWMEVGYLPRVHGSAIFTRGETQVLASVTLGTSKDVQMIDQIFVQGDK 391

Query: 58  WITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                Y   P  TG  R  R       G R      +  RAL +++   +     I ++ 
Sbjct: 392 RFFLHYEFPPFCTGEIRFLRG-----PGRREIGHGYLAERALAAMLPDESSFPYTIRVNA 446

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           DV++++G +  A++    +AL D    ++       +  + +G   AI         + D
Sbjct: 447 DVLESNGSSSMASVCAGSLALMDAGVPVKKHVAGVAMGLIKEGDQVAI---------LTD 497

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I   Q   +    +++     L  A+     ++ L + 
Sbjct: 498 ILGTEDHLGDMDFKVAGTRDG-ITACQMDIKIGGLTREIMQRALEQARRARMYILDLMEQ 556

Query: 237 VIS 239
            I 
Sbjct: 557 TIE 559



 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 88/233 (37%), Gaps = 27/233 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           + L    ++K A G+ +V+ GDT +L TA       E    +    ++    A  G +P 
Sbjct: 18  LRLETGRLAKQANGAVVVRQGDTMVLCTAVLADEPREGQSFFPLTVEYREKFAAGGRIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR   +     R+I RA+R +         QII  C VI AD     A
Sbjct: 77  --GGFIKRE---GRPTDKEILSSRLIDRAIRPLFPDGFFHEVQII--CYVISAD-DRYDA 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            +                 +          G +A +  G + G  +V+    E    D++
Sbjct: 129 DVLAGT----------GASAALLLAGAPFDGPIAEVRVGRVDGQFVVNPTLKELEQSDIN 178

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
              V      IV V+G  E    S++     L +A + I  L + Q + ++  
Sbjct: 179 L-VVAGKEDAIVMVEG--EMKEVSEEDMLEALEVAHEAIRKLCRGQLEFVAAH 228


>gi|218296616|ref|ZP_03497334.1| Polyribonucleotide nucleotidyltransferase [Thermus aquaticus
           Y51MC23]
 gi|218242929|gb|EED09462.1| Polyribonucleotide nucleotidyltransferase [Thermus aquaticus
           Y51MC23]
          Length = 713

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 94/245 (38%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           R  GR    +R I +   V   A GS +   G+T +L T TL       I +     +  
Sbjct: 328 RADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLGTGRDEQIIDDLGIDETD 387

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +   VS R+ G       +  RALR+V+         I +  D
Sbjct: 388 PFLVHYNFPPFSTGEVKRLRGVSRREVGHG----NLAKRALRAVLPSQEAFPYTIRVVGD 443

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGYP 173
           V++++G +  A +    +AL D                 +K  VA ++ G++        
Sbjct: 444 VLESNGSSSMATVCAGSLALMDAGV-------------PVKAPVAGVAMGLVWENEKAVI 490

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED+  D+D     T  G +  +Q   +     ++     L  A++    ++ L
Sbjct: 491 LTDILGLEDALGDMDFKVAGTRQG-VTALQMDNKVGGLPREVLKEALLQAREARLKILDL 549

Query: 234 QKDVI 238
            + V+
Sbjct: 550 MEMVL 554



 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 89/231 (38%), Gaps = 28/231 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + L     +K A GS LV++GDT +L TA   ++            +T E+     + 
Sbjct: 21  RTLILETGKYAKQASGSVLVRYGDTVVLATAQASDE----PVEADFLPLTVEFEERHYAV 76

Query: 71  ----GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
               G+ ++RE   GR G ++    RM  R +R +         Q+I+   V+ AD    
Sbjct: 77  GKIPGSFMRRE---GRPGEKAILSARMTDRPIRPLFPKGFRHEVQVIVT--VLSAD---- 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                       D L  +   +         +G VA++  G+L G  +++    E     
Sbjct: 128 -------QKNPPDILGPIAASAALMLSDIPWEGPVASVRVGLLGGQLVLNPTLQELEESA 180

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +D   V      I+ V+  A+     ++     L  A   +  ++ LQ+ +
Sbjct: 181 LDL-VVAGSRDAILMVEAGAQE--VDEETLVQALEFAHREMQPILDLQERM 228


>gi|302780062|ref|XP_002971806.1| hypothetical protein SELMODRAFT_441621 [Selaginella moellendorffii]
 gi|300160938|gb|EFJ27555.1| hypothetical protein SELMODRAFT_441621 [Selaginella moellendorffii]
          Length = 250

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 84/240 (35%), Gaps = 21/240 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR     R   L     + A GS   + GDT ++ +     +       +  G +  
Sbjct: 27  RIDGRHAQMCRAAFLRTGAVRAAAGSAYAESGDTKVIVSVFGPRESKKAEAFSDAGRLNC 86

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
                  +T  R K     G      +++  M+ +++   VDL       + +   V+Q+
Sbjct: 87  NVKYCSFATPVRGK----MGAANAEERDLSSMLYKSVVGAVDLRTFPKTTVDVFALVLQS 142

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
            GG     +T A +AL D    + D              VAA+S   + G  ++D    E
Sbjct: 143 GGGDLPVIVTCASLALADAGIVLYDL-------------VAAVSASSIQGQVLLDPSTSE 189

Query: 182 DSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ++  D       M     I +V  + E   +S       L L  D  A +  + +  +  
Sbjct: 190 ENCEDGSLMVAYMPSRKEITQVTMTGE---WSSSRASESLELCLDACAKIGDVMRSCLKE 246


>gi|71747850|ref|XP_822980.1| exosome complex exonuclease RRP41A [Trypanosoma brucei TREU927]
 gi|70832648|gb|EAN78152.1| exosome complex exonuclease RRP41A [Trypanosoma brucei]
          Length = 252

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 18/182 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59
           +RL GR+ N+ R ++L        +G C V  G +H+  T     +V   +        I
Sbjct: 13  LRLDGRRPNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLEGKYNEVTI 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           T +  +   + G R +      R    S++I   +    RSVV LS   + QI I  +V+
Sbjct: 73  TCDVVVAAFA-GERRR---EQQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICIEVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           + DG  + A I  A +AL D    M+D              V   + G++ G+ +VDL  
Sbjct: 129 KQDGSDKAACINAACLALIDASIAMKDV-------------VYTQTVGLIEGFDVVDLTT 175

Query: 180 GE 181
            E
Sbjct: 176 EE 177


>gi|33602856|ref|NP_890416.1| polynucleotide phosphorylase/polyadenylase [Bordetella
           bronchiseptica RB50]
 gi|81429864|sp|Q7WCQ0|PNP_BORBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33577298|emb|CAE35855.1| polyribonucleotide nucleotidyltransferase [Bordetella
           bronchiseptica RB50]
          Length = 719

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 93/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R IS+   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 320 RIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +      R+ G      R+  RAL  ++         I +  +
Sbjct: 380 RFMLHYNMPPFATGETGRIGVPKRREIGHG----RLAKRALLPLLPAPEDFQYTIRLVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +A+ D      D      +  +L     A+         + D+
Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPTNDHVAGVAMGLILDSGKFAV---------LTDI 486

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   +    +++     L  A++    ++   +D 
Sbjct: 487 LGDEDHLGDMDFKVAGTETG-ITALQMDIKIQGITKEIMQVALAQAREGRLHILGKMRDA 545

Query: 238 ISN 240
           +  
Sbjct: 546 LEG 548



 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 74/223 (33%), Gaps = 35/223 (15%)

Query: 22  KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKRE 77
           + A G+ LV   DT +L T       +     +     +   T   G +P   G   KRE
Sbjct: 25  RQASGAVLVSVEDTVVLATVVAAKKAKAGQDFFPLTVDYIEKTYAAGRIP---GGFFKRE 81

Query: 78  AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137
              G+   +     R+I R LR +         Q++I    +  D      A+ GA  AL
Sbjct: 82  ---GKPSEKETLTSRLIDRPLRPLFPEGFYNDVQVVIHTLSVNPDIDPDIPAMIGASAAL 138

Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197
                                G + A   G + G  +++    +  +  +D     T++ 
Sbjct: 139 AISGI-------------PFNGPIGAARVGYVDGQYVLNPTATQLKSSKMDLVVAGTENA 185

Query: 198 HIV----EVQGSAE----RATFSQDHFFAMLNLAKDRIADLIK 232
            ++      Q S E       F  +     +N     I DL++
Sbjct: 186 VLMVESEAKQLSEEIMLGGVVFGHEQMQTAIN----AIHDLVR 224


>gi|313901841|ref|ZP_07835262.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467884|gb|EFR63377.1| polyribonucleotide nucleotidyltransferase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 762

 Score =  124 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 94/250 (37%), Gaps = 27/250 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-----K 55
           +R  GR+  ++R I +   +   A GS L + G T +LT A+L       + +T     +
Sbjct: 323 IRPDGRRPAEIRPIHVEVGLLPRAHGSGLFQRGQTQVLTVASLGAPGDRQMLDTLGQIEE 382

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P STG      A S R+ G       +  RAL  V+         I + 
Sbjct: 383 FKRYMHHYNFPPYSTGEVAPLRAPSRREIGHG----ALAERALVPVLPDELDFPYTIRLV 438

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V+ ++G T  A+  G+ +AL D                 +K  VA ++ G++      
Sbjct: 439 SEVLSSNGSTSMASTCGSTLALMDAGV-------------PIKAPVAGVAMGLIKEGDRF 485

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G +  +Q   + A   +      L  A+     ++
Sbjct: 486 AVLTDIQGIEDHLGDMDFKVAGTREG-VTAIQMDIKIAGVDRAVLETALEQARAGRLFIL 544

Query: 232 KLQKDVISNE 241
           +    VI   
Sbjct: 545 EKMLAVIDKP 554



 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 85/234 (36%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    +++ A GS LV++GDT +L TAT      + +  +             G +
Sbjct: 24  RPLVVEIGQLAQQANGSALVRYGDTVILATATASKEPRQGIDFFPLRVDWEERLYAAGRI 83

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+  +RE   G+   R+    R+  R LR +         QII+       D    
Sbjct: 84  P---GSFFRRE---GKPSERAILSGRLTDRPLRPLFPKGYRNDVQIIVTTLSYDDDCSPE 137

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            A I GA VAL                     G V A+  G+L G  +++    +     
Sbjct: 138 IAGIIGASVAL-------------GISDIPWNGPVGAVEVGLLDGELVINPTAAQREHSR 184

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +D     T    I  V+  A      +      +    + I  L++ Q+ +I+ 
Sbjct: 185 LDLTVAGTRDA-INMVEAGAHEVP--EATILDAIFRGHEEIRRLVEFQEAIIAQ 235


>gi|33591966|ref|NP_879610.1| polynucleotide phosphorylase/polyadenylase [Bordetella pertussis
           Tohama I]
 gi|33597949|ref|NP_885592.1| polynucleotide phosphorylase/polyadenylase [Bordetella
           parapertussis 12822]
 gi|81425386|sp|Q7VZU0|PNP_BORPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81426411|sp|Q7W570|PNP_BORPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33571610|emb|CAE41100.1| polyribonucleotide nucleotidyltransferase [Bordetella pertussis
           Tohama I]
 gi|33574378|emb|CAE38716.1| polyribonucleotide nucleotidyltransferase [Bordetella
           parapertussis]
 gi|332381383|gb|AEE66230.1| polynucleotide phosphorylase/polyadenylase [Bordetella pertussis
           CS]
          Length = 719

 Score =  124 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 93/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R IS+   V   A GS L   G+T  L  ATL  K    I +   G    
Sbjct: 320 RIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRD 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +      R+ G      R+  RAL  ++         I +  +
Sbjct: 380 RFMLHYNMPPFATGETGRIGVPKRREIGHG----RLAKRALLPLLPAPEDFQYTIRLVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +A+ D      D      +  +L     A+         + D+
Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPTNDHVAGVAMGLILDSGKFAV---------LTDI 486

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   +    +++     L  A++    ++   +D 
Sbjct: 487 LGDEDHLGDMDFKVAGTETG-ITALQMDIKIQGITKEIMQVALAQAREGRLHILGKMRDA 545

Query: 238 ISN 240
           +  
Sbjct: 546 LEG 548



 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 75/223 (33%), Gaps = 35/223 (15%)

Query: 22  KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKRE 77
           + A G+ LV   DT +L T       +     +     +   T   G +P   G   KRE
Sbjct: 25  RQASGAVLVSVEDTVVLATVVAAKKAKAGQDFFPLTVDYIEKTYAAGRIP---GGFFKRE 81

Query: 78  AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137
              G+   +     R+I R LR +         Q++I    +  D      A+ GA  AL
Sbjct: 82  ---GKPSEKETLTSRLIDRPLRPLFPEGFYNDVQVVIHTLSVNPDIDPDIPAMIGASAAL 138

Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197
                                G + A   G + G  +++    +  +  +D     T++ 
Sbjct: 139 AISGI-------------PFNGPIGAARVGYVDGQYVLNPTATQLKSSKMDLVVAGTENA 185

Query: 198 HIV----EVQGSAE----RATFSQDHFFAMLNLAKDRIADLIK 232
            ++      Q S E       F  +   A +N     I DL++
Sbjct: 186 VLMVESEAKQLSEEIMLGGVVFGHEQMQAAIN----AIHDLVR 224


>gi|323705394|ref|ZP_08116969.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535296|gb|EGB25072.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 700

 Score =  124 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 91/245 (37%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKH 56
           +R+ GR  + +R I+    V     GS +   G T ++T ATL     + I     + + 
Sbjct: 311 IRVDGRGLDDIRPITCDVGVLPRTHGSAIFTRGQTQVMTVATLGPLGDIQILDGLGDEES 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G          R+ G       +  RAL  ++         I +  
Sbjct: 371 KRYMHHYNFPPFSVGETRPLRGPGRREIGHG----ALAERALEPMIPSEEEFPYTIRLVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ ++G T  A++ G+ +AL D    ++       +  + +G + +I         + D
Sbjct: 427 EVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDIVSI---------LTD 477

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T+ G I  +Q   + A   +D     L  A+     ++    +
Sbjct: 478 IQGIEDFLGDMDFKVAGTEKG-ITAIQMDIKIAGIDRDILSLALEKARKGRLFILNKMLE 536

Query: 237 VISNE 241
            I   
Sbjct: 537 TIKEP 541



 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 82/226 (36%), Gaps = 27/226 (11%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R++ +        A GS LV++GDT +L TA       E V  +  +  +       G +
Sbjct: 12  RKLIVQTGKLAQLANGSALVRYGDTVVLVTACASKEPREGVDFFPLSVDYEERLYSVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R +R +         Q+I     +  D    
Sbjct: 72  P---GGFIKRE---GKPTEKAILTSRLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ VAL                     G   ++S  ++ G  I++ D       D
Sbjct: 126 IVAMIGSSVALS-------------ISDIPFNGPTGSVSVALVDGNFIINPDLEAREKSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    I+ V+  A      ++     +  A + I  +++
Sbjct: 173 LHLTVSGTKDA-IMMVEAGANEVP--EEVMLDAIMYAHEYIKQIVE 215


>gi|325524616|gb|EGD02631.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. TJI49]
          Length = 713

 Score =  124 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 95/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 320 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +  +      I +  +
Sbjct: 380 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSADEFGYSIRVVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 436 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 486

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G +  +Q   +    +++     L  AK+    ++      
Sbjct: 487 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 545

Query: 238 ISN 240
           ++ 
Sbjct: 546 VAG 548



 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 77/234 (32%), Gaps = 38/234 (16%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    +++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 15  KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR         R+I R LR +         Q++I    +  +     
Sbjct: 75  ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +  T  +
Sbjct: 129 PALIGASAALA-------------VSGLPFNGPVGAARVAYVNDQYVLNPTREQLKTSRL 175

Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++ V+  A++           F  +     ++     I +L++
Sbjct: 176 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 224


>gi|295399860|ref|ZP_06809841.1| polyribonucleotide nucleotidyltransferase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978263|gb|EFG53860.1| polyribonucleotide nucleotidyltransferase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 712

 Score =  124 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 89/249 (35%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    V     GS L   G T +L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGLGIEET 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G            G R      +  RAL  VV         I +  
Sbjct: 375 KRFMHHYNFPPFSVGE----TGPMRGPGRREIGHGALGERALEPVVPSEKEFPYTIRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKNDDHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  A+    +++ 
Sbjct: 478 ILTDIQGIEDHLGDMDFKVAGTRKG-VTALQMDIKIKGLTREILEEALLQARKGRMEILD 536

Query: 233 LQKDVISNE 241
                I   
Sbjct: 537 HMMQTIREP 545



 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 91/233 (39%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RPLVVEIGELAKQANGAVLVRYGDTVVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         QI+     +  D     
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFSEGFRNEVQIVSMVMSVDQDCSPEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  +++    +    D+
Sbjct: 129 AALLGSSLAL-------------TISDIPFEGPIAGVTVGRVDGKFVINPTVEQSEKSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 T    I  V+  A+     ++     +    + I  LI  Q+++ + 
Sbjct: 176 HLVVAGTKDA-INMVEAGADEVP--EEIMLEAIMFGHEDIKRLIAFQEEIAAQ 225


>gi|121609766|ref|YP_997573.1| polynucleotide phosphorylase/polyadenylase [Verminephrobacter
           eiseniae EF01-2]
 gi|187611331|sp|A1WLP8|PNP_VEREI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|121554406|gb|ABM58555.1| 3' exoribonuclease [Verminephrobacter eiseniae EF01-2]
          Length = 757

 Score =  124 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 95/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V   A GS L   G+T  L  ATL  +      +   G    
Sbjct: 317 RIDGRDTRTVRPIEIRAGVLPRAHGSALFTRGETQALAVATLGTERDAQRIDALAGEYDD 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL +V+         + +  +
Sbjct: 377 RFMLHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVAVLPTKEEFPYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  ++L D    M             K HVA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLIKDGNRFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     L  AK+    ++  
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTAG-ITALQMDIKIQGITREIMQVALAQAKEARMHILGK 538

Query: 234 QKDVISN 240
            +  I  
Sbjct: 539 MQQAIGQ 545



 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 77/230 (33%), Gaps = 34/230 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           + +    +++ A G+ LV   DT +L T     +++     +     +   T   G +P 
Sbjct: 18  VVMETGEIARQASGAVLVSIDDTVVLATVVASRSIKPGQDFFPLTVDYIEKTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  KREA   +         R+I R LR +          ++I            T 
Sbjct: 77  --GSFFKREA---KPSEHETLTSRLIDRPLRPLFPQGFFNEVHLVI-----------HTL 120

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++     A  D    +   +          G + A   G + G   ++       +  +D
Sbjct: 121 SLNPEVDA--DIAALIASSAALALSGIPFNGPIGAARVGYIQGEYRLNPGPTARKSSQLD 178

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML-------NLAKDRIADLI 231
                T++  ++     +E    S++     +        +A D I +L+
Sbjct: 179 LVVAGTEAAVLMV---ESEAQQLSEEIMLGAVVFGHQQGKVAIDAIHELV 225


>gi|303257193|ref|ZP_07343207.1| polyribonucleotide nucleotidyltransferase [Burkholderiales
           bacterium 1_1_47]
 gi|302860684|gb|EFL83761.1| polyribonucleotide nucleotidyltransferase [Burkholderiales
           bacterium 1_1_47]
          Length = 724

 Score =  124 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 93/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L   TL  K        +   +  
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQALVVTTLGTKQDEQIVDGLTGEQRE 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL +V+         + +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALTAVLPNEEDFQYTMRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  ++L D                 LK  VA ++ G++        
Sbjct: 438 ICESNGSSSMASVCGGCLSLLDAGV-------------PLKDFVAGVAMGLIKEGNKFAV 484

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     TD G +  +Q   +    S++     L  AK+    ++  
Sbjct: 485 LTDILGDEDHLGDMDFKVAGTDHG-VTALQMDIKIEGISKEIMQVALAQAKEGRMHILGK 543

Query: 234 QKDVISNE 241
             + +   
Sbjct: 544 MHEAVEGP 551



 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 77/233 (33%), Gaps = 27/233 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
            +      +++ A G+ +    DT +L T      ++     +     +   T   G +P
Sbjct: 17  NVRFETGEIARQASGAVICDMDDTVVLATVVAKKEIKPGQDFFPLTVDYIEKTYAAGRIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR   +     R+I R +R +         QIII    +  +     
Sbjct: 77  ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFFNEVQIIIHVLSVNPEVDPDI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            ++  A  AL                     G +AA   G +    ++  +  +     +
Sbjct: 131 PSMIAASAALA-------------VSGVPFNGPIAAARVGYINNEYVLCPNLSQMKDSKL 177

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     T+   ++     +E    S++     +    +++  +I+   +++  
Sbjct: 178 DLVVAGTERAVLMV---ESEADQLSEEVMLGAVMFGYEKMQVVIEAIDELVEE 227


>gi|312111628|ref|YP_003989944.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y4.1MC1]
 gi|311216729|gb|ADP75333.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y4.1MC1]
          Length = 712

 Score =  124 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 89/249 (35%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    V     GS L   G T +L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGLGIEET 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G            G R      +  RAL  VV         I +  
Sbjct: 375 KRFMHHYNFPPFSVGE----TGPMRGPGRREIGHGALGERALEPVVPSEKEFPYTIRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKNDDHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  A+    +++ 
Sbjct: 478 ILTDIQGIEDHLGDMDFKVAGTRKG-VTALQMDIKIKGLTREILEEALLQARKGRMEILD 536

Query: 233 LQKDVISNE 241
                I   
Sbjct: 537 HMMQTIREP 545



 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 91/233 (39%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RPLVVEIGELAKQANGAVLVRYGDTVVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         QI+     +  D     
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFSEGFRNEVQIVSMVMSVDQDCSPEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  +++    +    D+
Sbjct: 129 AALLGSSLAL-------------TISDIPFEGPIAGVTVGRVDGKFVINPTVEQSEKSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 T    I  V+  A+     ++     +    + I  LI  Q+++ + 
Sbjct: 176 HLVVAGTKDA-INMVEAGADEVP--EEIMLEAIMFGHEDIKRLIAFQEEIAAQ 225


>gi|332981620|ref|YP_004463061.1| polyribonucleotide nucleotidyltransferase [Mahella australiensis
           50-1 BON]
 gi|332699298|gb|AEE96239.1| polyribonucleotide nucleotidyltransferase [Mahella australiensis
           50-1 BON]
          Length = 708

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 91/250 (36%), Gaps = 28/250 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R  GR+ +++R IS    +     GS L   G T +LT ATL       +       +  
Sbjct: 312 RPDGRKLDEIRPISCEVGLIPRVHGSGLFTRGQTQVLTIATLGAPGDEQMLEDLSLEESK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P STG          R+ G       +  RAL  ++         I +  +
Sbjct: 372 RYIHHYNMPPYSTGEAKMMRGPGRREIGHG----ALAERALEPMIPSQEEFPYTIRLVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           V+ ++G T  A++ G+ +AL D                 +K  VA ++ G++        
Sbjct: 428 VMSSNGSTSQASVCGSTLALMDAGV-------------PIKAPVAGVAMGLMKDEQSDKV 474

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G +  +Q   +     +    A L  A +    ++
Sbjct: 475 AILTDIQGLEDFFGDMDFKVAGTADG-VTAIQMDIKVKGIDRSILEAALKQAYEGRMFIM 533

Query: 232 KLQKDVISNE 241
               +VIS  
Sbjct: 534 NKMLEVISEP 543



 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 27/234 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R++ +      + A G+ LV++GDT +    T      E +  +  +          G +
Sbjct: 12  RKLRIETGKLAEQANGAVLVRYGDTTVFVAVTASKEPREGIDFFPLSVDFEEKLYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R +R +         Q++     ++ D    
Sbjct: 72  P---GGYIKRE---GKPTEKAILTSRLIDRPIRPLFPKGYRNDVQVVAMPLSVEPDVPPD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                    +G + A+  G++ G  +++ D  +     
Sbjct: 126 VVAMVGASAALS-------------ISDIPFEGPIGAVLVGLVDGELVINPDAAQRERSR 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    I+ V+  A      +D     +    + I  L+  Q+ ++S 
Sbjct: 173 LHLTVAGTKDA-IMMVEAGANEVP--EDKILEAIMFGHEHIKQLVAFQEQIVSE 223


>gi|225715750|gb|ACO13721.1| Exosome complex exonuclease MTR3 [Esox lucius]
          Length = 277

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 91/254 (35%), Gaps = 34/254 (13%)

Query: 2   RLSGRQENQM--REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGW 58
           R+ GRQ  Q+  R + +   +   A+GS  ++ G+T L+       ++      + K G 
Sbjct: 36  RVDGRQRGQVDVRSVFVRCGLISQAKGSAYIEAGNTKLICCVYGPREMERKDETDMKSGR 95

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  +    P S      RE  S  QG   +++  M+  +LR  V L      QI ++  V
Sbjct: 96  LMTDMRFAPFSC-----RERGSWIQGSDEKDLSLMLLESLRPGVCLHKYPRSQIEVNVMV 150

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ++ DG     A+T A +AL D    M D              V   S        ++D  
Sbjct: 151 LENDGSVLAHAVTCASMALADAGIEMYDL-------------VLGCSIRQESATYLIDPT 197

Query: 179 YGEDSTIDVD----------ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
           Y E++  ++               +     I  +Q   E     +D     +    +   
Sbjct: 198 YLEENGCNLASGSGDNFGSLTVAFLPSLNQISGLQSDGEMG---EDILTGGVRTCIEGCF 254

Query: 229 DLIKLQKDVISNEV 242
            L  + +  ++  V
Sbjct: 255 KLYPVIQQALTKAV 268


>gi|46199080|ref|YP_004747.1| polynucleotide phosphorylase/polyadenylase [Thermus thermophilus
           HB27]
 gi|75424073|sp|Q9ZAE1|PNP_THETH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81405907|sp|Q72JJ8|PNP_THET2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|4138650|emb|CAB06341.1| polynucleotide phosphorylase [Thermus thermophilus]
 gi|46196704|gb|AAS81120.1| polynucleotide phosphorylase [Thermus thermophilus HB27]
          Length = 713

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 94/245 (38%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           R  GR    +R I +   V   A GS +   G+T +L T TL       I +     +  
Sbjct: 327 RADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLGTGRDEQILDDLGIDETE 386

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +   VS R+ G       +  RAL++V+         I +  D
Sbjct: 387 KFLVHYNFPPFSTGEVRRLRGVSRREVGHG----NLAKRALKAVMPKEEDFPYTIRVVGD 442

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           V++++G +  A +    +AL D                 ++  VA ++ G++        
Sbjct: 443 VLESNGSSSMATVCAGCLALMDAGV-------------PIRAPVAGVAMGLVWEENRAVI 489

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED+  D+D     T  G +  +Q   +     ++     L  A++    ++ L
Sbjct: 490 LTDILGLEDALGDMDFKVAGTRKG-VTALQMDNKVGGLPREVLKEALLQAREARLKILDL 548

Query: 234 QKDVI 238
            + V+
Sbjct: 549 METVL 553



 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 91/236 (38%), Gaps = 29/236 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + L     +K A GS LV++ DT +L TA   E             +T E+     + 
Sbjct: 20  RPLVLETGKYAKQASGSVLVRYADTVVLATAQASET----PVEADFLPLTVEFEERHYAV 75

Query: 71  ----GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
               G+ ++RE   GR G ++    RM  R +R +         QII+   V+ AD    
Sbjct: 76  GKIPGSFMRRE---GRPGEKAILSARMTDRPIRPLFPKGFRHEVQIIVT--VLSAD---- 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                       D L  +   +         +G +AA+  G++ G  +++    E     
Sbjct: 127 -------QKNPPDILGPIAASAALMLSDIPWEGPIAAVRVGLIGGSFVLNPTLQELEESQ 179

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           +D   V      I+ V+  AE     ++     L  A   +  +++LQ + ++ E+
Sbjct: 180 LDL-VVAGSKEAILMVE--AEAGEVDEETLVQALEFAHKEMQPILELQ-EAMAREL 231


>gi|327399809|ref|YP_004340678.1| polyribonucleotide nucleotidyltransferase [Hippea maritima DSM
           10411]
 gi|327182438|gb|AEA34619.1| Polyribonucleotide nucleotidyltransferase [Hippea maritima DSM
           10411]
          Length = 703

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 94/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKH 56
           +R+ GR  +++R I+    V   A GS +   G+T  L   TL  +    I        +
Sbjct: 314 VRIDGRGLDEIRPITCEVGVLPRAHGSAVFTRGETQALVATTLGSREDAQIIDDVSEEGY 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y  LP STG   +     G  G R      +  RA+  ++         I +  
Sbjct: 374 ERFMLHYNFLPFSTGEVKR----LGPPGRREIGHGNLAKRAIEPMLPSEDDFPYAIRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           D+++++G +  A + G+ ++L D                 +K  V+ ++ G++    GY 
Sbjct: 430 DILESNGSSSMATVCGSTLSLMDAGV-------------PIKKPVSGVAMGLIKYEGGYA 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           I+ D+   ED   D+D     T  G I  +Q   +            L  AK+    ++ 
Sbjct: 477 ILTDILGDEDHYGDMDFKVAGTKDG-ITALQMDIKITGVDAVLLKEALYKAKEARLFILN 535

Query: 233 LQKDVISNE 241
               V+ + 
Sbjct: 536 KMLAVLDSP 544



 Score = 79.0 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 85/239 (35%), Gaps = 38/239 (15%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------G 64
           ++++     +K A+G+C+++ GDT +L TA   ++ P          +T  Y       G
Sbjct: 12  KLTIETGWYAKQADGACVIRMGDTMVLATAVSSKEPPKEFL--DFLPLTVNYQERFYAAG 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G  VKRE   G+       + R+I R++R +         Q+II       +  
Sbjct: 70  KIP---GGFVKRE---GKPTVHETLVSRLIDRSIRPLFPKDYKQEIQVIITTISADQEND 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--YPIVDLDYGED 182
               +I  A  +L                     G VA +              L   +D
Sbjct: 124 PAIISILAASCSLC-------------LSDIPFLGPVAGVRVSRFENGLKAFASLKEIDD 170

Query: 183 STIDVDANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           S      N ++      I  ++  A     S+D     +   KD I  L+  Q+++I  
Sbjct: 171 SR----LNLILAGTKDAINMIEAGA--GELSEDEMVDAIMFGKDNIDILLDAQEEIIKK 223


>gi|257451721|ref|ZP_05617020.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium sp.
           3_1_5R]
          Length = 743

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 94/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
           R+ GR   ++R +     V     GS L   G+T  L TATL  K    + +      + 
Sbjct: 360 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKDDEQLVDNLEKEYYK 419

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G       +  RALR V+         I +  D
Sbjct: 420 KFYLHYNFPPYSVGETGRMGAPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSD 475

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  +AL                   +K HVA I+ G++        
Sbjct: 476 ITESNGSSSQASICGGSLALMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 522

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T SG I  +Q   +    +++     LN A      ++++
Sbjct: 523 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHVARQQILEV 581

Query: 234 QKDVISNE 241
               IS+ 
Sbjct: 582 MNTAISSP 589



 Score = 69.0 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 81/234 (34%), Gaps = 29/234 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + ++   +++ + G+ ++++GDT LL+T        +    +     +       G  
Sbjct: 50  RTLKVSTGKIARQSCGAVMIQYGDTVLLSTVNRSKEPRKGADFFPLTVDYIEKFYAAGKF 109

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE+   R    +  + R+I R +R +          I+             
Sbjct: 110 P---GGFNKRES---RPSTDATLVARLIDRPIRPMFPEGFTYDVHIVNTVFSFDEQNTPD 163

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              I G+ +AL                     G VA ++ G + G  I++    +     
Sbjct: 164 YLGIIGSSLALS-------------ISDIPFLGPVAGVTVGYIDGEFILNPSPEQLEKSL 210

Query: 187 VDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +D +   T    ++VE    A      ++     +  A D I  +   Q++ + 
Sbjct: 211 LDLSVAGTKDAVNMVE----AGAKELDEETMLKAILFAHDNIKKICAFQEEFVK 260


>gi|91782608|ref|YP_557814.1| polynucleotide phosphorylase/polyadenylase [Burkholderia xenovorans
           LB400]
 gi|122970578|sp|Q142H7|PNP_BURXL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|91686562|gb|ABE29762.1| Putative polyribonucleotide nucleotidyltransferase [Burkholderia
           xenovorans LB400]
          Length = 716

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K      +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALAACLPSADEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G +  +Q   +    +++     L  AK+    ++      
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITREIMQVALAQAKEGRLHILGKMTSA 547

Query: 238 ISN 240
           +S 
Sbjct: 548 VSG 550



 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 77/233 (33%), Gaps = 36/233 (15%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    +++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 17  KVRLETGEIARQASGAVIVDVEDTVVLATVVGARTAKPGQDFFPLTVDYLEKTYAAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR       I R+I R LR +         Q++I    +  +     
Sbjct: 77  ---GGFFRRE---GRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPEIPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESAL 177

Query: 188 DANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++   E Q  +E        F  +       +A D I DL++
Sbjct: 178 DLIVAGTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQ----IAIDAIHDLVR 226


>gi|289523245|ref|ZP_06440099.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503788|gb|EFD24952.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 741

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 96/248 (38%), Gaps = 22/248 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
           +R  GR  +++R IS    +   A GS +   G+T  L   TL     +E++   ++  +
Sbjct: 313 LRADGRAMDELRPISCEVSLLPRAHGSAVFTRGETQALVVTTLGMFGEDEQILDGLKLDE 372

Query: 56  -HGWITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
                   Y   P S G  R  R       G R      +  RA++ ++   +     I 
Sbjct: 373 PPKRFMLHYNFPPFSVGEVRPMRG-----PGRREIGHGALAERAVKPLIPDESQFPYIIR 427

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  D+++++G +  A++ GA ++L D    +        +  + +G   AI         
Sbjct: 428 VVSDILESNGSSSMASVCGASMSLMDAGVPIAKSVAGIAMGLIKEGDKYAI--------- 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    +++     L+ AK     ++ +
Sbjct: 479 LTDIQGLEDHYGDMDFKVAGTRDG-VTALQMDNKAGGITREILVQALDQAKRGRLQILDI 537

Query: 234 QKDVISNE 241
            +  I   
Sbjct: 538 MEKAIGRP 545



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 78/222 (35%), Gaps = 26/222 (11%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           T  ++K A G+   ++GDT +L TA +E    E V  +     +       G +P   G 
Sbjct: 20  TGHLAKQANGAVYARYGDTAVLVTACMEDEPREDVDFFPLIVDYEERFYAAGKIP---GG 76

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   G+    +    R++ R++RS+          + +   ++  D          
Sbjct: 77  FIKRE---GKPSESAILSARLVDRSIRSLFPEHM--KNDVHVVATILSVD---------- 121

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
                 D L      +          G V A+  G + G  +++    ED         V
Sbjct: 122 -QTNPPDVLAINAASAALAISDIPWDGPVGAVRVGYIDGSLVINPM-EEDMQNSTLDLVV 179

Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
                 I  V+G A      ++     L LA+  I  L+  Q
Sbjct: 180 AGHKEGITMVEGGA--GEVPEEVLVDALELAQQEIRRLVDFQ 219


>gi|257467022|ref|ZP_05631333.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315918159|ref|ZP_07914399.1| polyribonucleotide nucleotidyltransferase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313692034|gb|EFS28869.1| polyribonucleotide nucleotidyltransferase [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 707

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 94/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
           R+ GR   ++R +     V     GS L   G+T  L TATL  K    + +      + 
Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKDDEQLVDNLEKEYYK 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G       +  RALR V+         I +  D
Sbjct: 384 KFYLHYNFPPYSVGETGRMGAPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSD 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  +AL                   +K HVA I+ G++        
Sbjct: 440 ITESNGSSSQASICGGSLALMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 486

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T SG I  +Q   +    +++     L+ A      ++++
Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALSQAHVARQQILEV 545

Query: 234 QKDVISNE 241
               IS+ 
Sbjct: 546 MNAAISSP 553



 Score = 69.0 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 81/234 (34%), Gaps = 29/234 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + ++   +++ + G+ ++++GDT LL+T        +    +     +       G  
Sbjct: 14  RTLKVSTGKIARQSCGAVMIQYGDTVLLSTVNRSKEPRKGADFFPLTVDYIEKFYAAGKF 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE+   R    +  + R+I R +R +          I+             
Sbjct: 74  P---GGFNKRES---RPSTDATLVARLIDRPIRPMFPEGFTYDVHIVNTVFSFDEQNTPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              I G+ +AL                     G VA ++ G + G  I++    +     
Sbjct: 128 YLGIIGSSLALS-------------ISDIPFLGPVAGVTVGYIDGEFILNPSPEQLEQSL 174

Query: 187 VDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +D +   T    ++VE    A      ++     +  A D I  +   Q++ + 
Sbjct: 175 LDLSVAGTKDAVNMVE----AGAKELDEETMLKAILFAHDNIKKICAFQEEFVK 224


>gi|15605776|ref|NP_213153.1| polynucleotide phosphorylase/polyadenylase [Aquifex aeolicus VF5]
 gi|81343315|sp|O66593|PNP_AQUAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|2982946|gb|AAC06562.1| polyribonucleotide nucleotidyltransferase [Aquifex aeolicus VF5]
          Length = 775

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 93/250 (37%), Gaps = 25/250 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI 59
           +R+ GR+ N++R I +     +   G+ +   G T    T T       + I     G +
Sbjct: 312 VRIDGRKPNEIRPIWIEVHPFERPHGNAIFTRGQTQAYVTVTLGTPDEALIIETIAEGEV 371

Query: 60  ----TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y M P S G          R+ G       +  RA+  ++         I + 
Sbjct: 372 FKRFMLHYSMPPFSVGEAKPWGPPRRREIGHG----ALAERAIEPLLPPEEEYPFIIRVV 427

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            D+++++G T  A + GA +AL D    M+D             HVA I+ G++      
Sbjct: 428 SDILESNGSTSMATVCGASLALFDAGVPMKDNK-----------HVAGIAMGLILEKDRY 476

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I  VQ   +    +++     L  A++    ++
Sbjct: 477 VILSDILGDEDHLGDMDFKVAGTKDG-ITSVQMDIKVKGITKEIMLDALKQAREGRLYIL 535

Query: 232 KLQKDVISNE 241
           +   + I   
Sbjct: 536 EKMYEAIPEP 545



 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 90/237 (37%), Gaps = 32/237 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLP 67
            I +     +K  +GS +V+ G T +L TA + ++    V        +    + YG +P
Sbjct: 15  PIIIETGKYAKLTDGSVVVRQGGTAVLVTAVMSDEPITDVDFTPLAVDYRERASAYGRIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
              G   KRE   G+   R   + R+I R +R +          +II    + AD     
Sbjct: 75  ---GGFTKRE---GKPTDREILVSRVIDRPIRPLFPEGFFHD--VIITALTLSADDKYDP 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AITGA  ALH                   +G +A +    + G  + +  Y +    
Sbjct: 127 DVLAITGASAALH-------------ISRIPFEGPIAGVRVCRVNGEFVANPTYEQRKEA 173

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           D+D     T    IV V+G  +     ++     L    D I ++I+ Q + +  +V
Sbjct: 174 DLDIVMAGTKDA-IVMVEGGGKEIP--EEVLADALFFGLDAIKEVIEAQ-ERLREKV 226


>gi|317058280|ref|ZP_07922765.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_5R]
 gi|313683956|gb|EFS20791.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_5R]
          Length = 707

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 94/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
           R+ GR   ++R +     V     GS L   G+T  L TATL  K    + +      + 
Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKDDEQLVDNLEKEYYK 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G       +  RALR V+         I +  D
Sbjct: 384 KFYLHYNFPPYSVGETGRMGAPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSD 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  +AL                   +K HVA I+ G++        
Sbjct: 440 ITESNGSSSQASICGGSLALMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 486

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T SG I  +Q   +    +++     LN A      ++++
Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHVARQQILEV 545

Query: 234 QKDVISNE 241
               IS+ 
Sbjct: 546 MNTAISSP 553



 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 81/234 (34%), Gaps = 29/234 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + ++   +++ + G+ ++++GDT LL+T        +    +     +       G  
Sbjct: 14  RTLKVSTGKIARQSCGAVMIQYGDTVLLSTVNRSKEPRKGADFFPLTVDYIEKFYAAGKF 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE+   R    +  + R+I R +R +          I+             
Sbjct: 74  P---GGFNKRES---RPSTDATLVARLIDRPIRPMFPEGFTYDVHIVNTVFSFDEQNTPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              I G+ +AL                     G VA ++ G + G  I++    +     
Sbjct: 128 YLGIIGSSLALS-------------ISDIPFLGPVAGVTVGYIDGEFILNPSPEQLEKSL 174

Query: 187 VDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +D +   T    ++VE    A      ++     +  A D I  +   Q++ + 
Sbjct: 175 LDLSVAGTKDAVNMVE----AGAKELDEETMLKAILFAHDNIKKICAFQEEFVK 224


>gi|170691678|ref|ZP_02882842.1| Polyribonucleotide nucleotidyltransferase [Burkholderia graminis
           C4D1M]
 gi|170142962|gb|EDT11126.1| Polyribonucleotide nucleotidyltransferase [Burkholderia graminis
           C4D1M]
          Length = 715

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K      +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALAACLPSADEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G +  +Q   +    +++     L  AK+    ++      
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547

Query: 238 ISN 240
           +S 
Sbjct: 548 VSG 550



 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 76/233 (32%), Gaps = 36/233 (15%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
            + L    +++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 17  NVRLETGEIARQASGAVIVDVEDTVILATVVGAKTAKPGQDFFPLTVDYLEKTYAAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR       I R+I R LR +         Q++I    +  D     
Sbjct: 77  ---GGFFRRE---GRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPDVPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESAL 177

Query: 188 DANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++   E Q  +E        F  +       +A D I DL++
Sbjct: 178 DLIVAGTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQ----IAIDAIHDLVR 226


>gi|295696164|ref|YP_003589402.1| polyribonucleotide nucleotidyltransferase [Bacillus tusciae DSM
           2912]
 gi|295411766|gb|ADG06258.1| polyribonucleotide nucleotidyltransferase [Bacillus tusciae DSM
           2912]
          Length = 727

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 92/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           MR  GR  +++R IS    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 310 MRPDGRALDEIRPISCEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLDLEES 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      A S R  G       +  RAL  V+         I +  
Sbjct: 370 KRFMHHYNFPPFSVGEARPIRAPSRRDIGHG----ALGERALEPVIPSEEEFPYTIRLVS 425

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +AL D                 +K  VA ++ G++       
Sbjct: 426 EVLESNGSTSQASICGSTLALMDAGV-------------PIKAPVAGVAMGLVKEGDRVA 472

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G +  +Q   +    ++D   + L  A      ++ 
Sbjct: 473 ILTDIQGMEDHLGDMDFKVAGTAAG-VTALQMDIKIKGLTRDILASALEQAHRGRMFILG 531

Query: 233 LQKDVISNE 241
              +VI   
Sbjct: 532 KMLEVIQQP 540



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 80/230 (34%), Gaps = 26/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R + L      K A  +  V++GDT +L T T+    + +  +     +       G +P
Sbjct: 12  RRLVLETGKLAKQATAAVTVRYGDTVVLATVTMSKEPKDLDFFPLTVNYEERLYAVGKIP 71

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D     
Sbjct: 72  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFPEGFRNEVQVVALVLSVDQDCPPEI 125

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           A + G   AL                     G +A +  G + G  +V+    +    D+
Sbjct: 126 AGMIGTSAAL-------------TISPIPFDGPIAGLVVGRVDGQFVVNPTVAQTEKSDM 172

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
               V      +V V+  A      +      +    +++  LI LQ+ +
Sbjct: 173 HL-VVAGSRSAVVMVEAGANEVP--ESEMLDAIMFGHEQLQPLIDLQERM 219


>gi|157164996|ref|YP_001467328.1| polynucleotide phosphorylase/polyadenylase [Campylobacter concisus
           13826]
 gi|187470951|sp|A7ZEX0|PNP_CAMC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|112801842|gb|EAT99186.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Campylobacter
           concisus 13826]
          Length = 732

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 88/243 (36%), Gaps = 22/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNT 54
           +R  GR   ++R IS+   V   A GSCL   G T  L  ATL       +      +  
Sbjct: 343 IRADGRGLEEVRPISIETNVLPNAHGSCLFTRGQTQALVVATLGTDSDAQMYDILTEKAP 402

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y     S G     +A   R+ G       +  RAL   +DL++     I +
Sbjct: 403 LVEKFMFNYNFPGFSVGEASPLKAPGRRELGHG----NLAKRALAPSIDLAS--PYTIRV 456

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++++++G +  A++ G  +AL     + +       +  + +G   A+         +
Sbjct: 457 VSEILESNGSSSMASVCGGSLALRAAGVNTQKLVAGVAMGLIFEGEKHAV---------L 507

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED   D+D     T  G I  +Q   +    S +     L  AK     ++ L 
Sbjct: 508 TDIMGLEDHDGDMDFKVAGTSDG-ITALQMDIKLGGISLEVLKEALYQAKRGREHILALM 566

Query: 235 KDV 237
              
Sbjct: 567 TQA 569



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 80/257 (31%), Gaps = 57/257 (22%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
           V+K A G+ L++  +T +L T   E+   +        ++       G +P   G  VKR
Sbjct: 19  VAKQASGAVLLRVKNTVVLATVAREDVQVEEDFLPLTVQYIEKAYAAGKIP---GGYVKR 75

Query: 77  EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAW 134
           E    + G       R+I R+LR +         QI++   V+ AD     +  ++  A 
Sbjct: 76  ET---KPGDFETLTARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPEVDLQVVSLNAAS 130

Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT 194
           VAL+                  +   V  +  G +    +++    E     +D     T
Sbjct: 131 VALY-------------LSDIPVNRPVCGVRVGYIDDKFVINPSNSELKQSAIDLYVAGT 177

Query: 195 DSGHIVEVQGSAERA------------------------------TFSQDHFFAMLNLAK 224
               ++ ++  +                                  FS+D     ++ A 
Sbjct: 178 KD-ELLMIEMRSLPQQTTQLIPMVAIEPMIDPSLSDSMAQKQVMNEFSEDKMVEAIDFAG 236

Query: 225 DRIADLIKLQKDVISNE 241
             I       ++     
Sbjct: 237 KAILRASSAYEEAFKEH 253


>gi|323525432|ref|YP_004227585.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1001]
 gi|323382434|gb|ADX54525.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1001]
          Length = 715

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K      +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALAACLPSADEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G +  +Q   +    +++     L  AK+    ++      
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547

Query: 238 ISN 240
           +S 
Sbjct: 548 VSG 550



 Score = 78.6 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 75/233 (32%), Gaps = 36/233 (15%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
            + L    +++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 17  NVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYLEKTYAAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR       I R+I R LR +         Q++I    +  D     
Sbjct: 77  ---GGFFRRE---GRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPDIPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYINNEYVLNPTRPQMKDSAL 177

Query: 188 DANFVMTDSGHIV---EVQGSAER-----ATFSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++   E Q  +E        F  +     ++     I DL++
Sbjct: 178 DLVVAGTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQVAID----AIHDLVR 226


>gi|307730344|ref|YP_003907568.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1003]
 gi|307584879|gb|ADN58277.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1003]
          Length = 715

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K      +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALAACLPSADEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G +  +Q   +    +++     L  AK+    ++      
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547

Query: 238 ISN 240
           +S 
Sbjct: 548 VSG 550



 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 76/233 (32%), Gaps = 36/233 (15%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
            + L    +++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 17  NVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYLEKTYAAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR       I R+I R LR +         Q++I    +  D     
Sbjct: 77  ---GGFFRRE---GRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPDIPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYINNEYVLNPTRAQMKDSAL 177

Query: 188 DANFVMTDSGHIV---EVQGSAER-----ATFSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++   E Q  +E        F  +   A ++     I DL++
Sbjct: 178 DLVVAGTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQAAID----AIHDLVR 226


>gi|255578123|ref|XP_002529931.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
 gi|223530561|gb|EEF32439.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
          Length = 180

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 8/155 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  ++ R           A GS   +FG+T ++ +     +    +  +  G + 
Sbjct: 33  VRPDGRSFSECRPAYFRTGAVNAAAGSAYAEFGNTKVIVSVFGPRESKKAMMYSDVGRLN 92

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
                   ST  R         QG   +E   M+ ++L   + L       + +   V++
Sbjct: 93  CNVSYTTFSTPVRG--------QGSDCKEFSSMLHKSLEGAIMLETFPKTTVDVFALVLE 144

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ 155
           + G   +  ++ A +AL D    M D      + +
Sbjct: 145 SGGSDLSVIVSCASLALADAGIMMYDLVAGVSVHE 179


>gi|147677610|ref|YP_001211825.1| polynucleotide phosphorylase/polyadenylase [Pelotomaculum
           thermopropionicum SI]
 gi|187610305|sp|A5D2S6|PNP_PELTS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146273707|dbj|BAF59456.1| polyribonucleotide nucleotidyltransferase [Pelotomaculum
           thermopropionicum SI]
          Length = 734

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR  N++R IS+   V     GS L   G T +L+  TL    EE++   +   + 
Sbjct: 325 LRIDGRALNEVRPISVEVGVLPRPHGSGLFTRGQTQILSVVTLGTVSEEQILDGLGVEES 384

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG      +   R+ G       +  RAL +V+         I I  
Sbjct: 385 KRFMHHYNFPPYSTGETRPLRSPGRREIGHG----ALAERALAAVIPGEEEFPYTIRIVS 440

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           + ++++G T   ++ G+ +AL D                 +   VA ++ G++       
Sbjct: 441 EALESNGSTSMGSVCGSTLALMDAGV-------------PISAPVAGVAMGLIKEGDNFT 487

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    +++ F   L  A +    ++ 
Sbjct: 488 VLTDIQGFEDHLGDMDFKVAGTAKG-ITALQMDIKIPGITREVFEKALAQAYEGRMHILN 546

Query: 233 LQKDVI 238
              +V+
Sbjct: 547 KMLEVL 552



 Score = 85.9 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 84/226 (37%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGML 66
           R + L    ++  A G+  V++GDT +L TAT+   V      +     +       G +
Sbjct: 16  RPMILETGRLANQASGAVFVRYGDTAVLVTATVAPTVRAGIDFFPLTVDYEERFYAVGKI 75

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE+   R   ++    R+I R +R +         Q+I     +  D    
Sbjct: 76  P---GGFIKRES---RPSEKAILSGRLIDRPIRPLFPKEMRNEVQVIATILSVDQDNAPE 129

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA  ALH                  LK  +  +  G + G  +++    +    D
Sbjct: 130 IAAMVGASAALH-------------ISEIPLKFPIGGVIVGRVDGRFVINPVLAQAEKSD 176

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ V+  A+     ++     ++   + + +++ 
Sbjct: 177 MHLVVAGTKDA-VMMVEAGAKEVP--EEVILEAISFGHETVKEIVA 219


>gi|167585967|ref|ZP_02378355.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ubonensis
           Bu]
          Length = 715

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL   +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVKCLPSADEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G +  +Q   +    +++     L  AK+    ++      
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTAA 547

Query: 238 ISN 240
           +S 
Sbjct: 548 VSG 550



 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 76/232 (32%), Gaps = 34/232 (14%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    +++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 17  KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR         R+I R LR +         Q++I    +  D     
Sbjct: 77  ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPDIPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSL 177

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232
           D     T+   ++     +E    S+D            + +A D I DL++
Sbjct: 178 DLVVAGTERAVLMV---ESEADQLSEDVMLGAVVFGHEQMQIAIDAIHDLVR 226


>gi|291514384|emb|CBK63594.1| polyribonucleotide nucleotidyltransferase [Alistipes shahii WAL
           8301]
          Length = 747

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 93/245 (37%), Gaps = 16/245 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +RL GR+ +++R I         A GS +   G+T  LTT T    L+EKV   +     
Sbjct: 323 VRLDGRKTDEIRPIWCEVGYLPAAHGSAIFTRGETQSLTTVTLGTKLDEKVKDEVLVQGT 382

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG       +S R+ G       +  RAL+ ++ L       + +  
Sbjct: 383 EQFVLHYNFPPFSTGEAKAARGLSRREIGHGH----LAWRALKPMIPLGEDNPYAVRVVS 438

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           D+++++G +  A +    +AL D    +    +   +     G ++    G      + D
Sbjct: 439 DILESNGSSSMATVCAGTLALMDAGVKLRKPVSGIAM-----GLISDSETGKWA--VLSD 491

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I   Q   +    S +   A L  A+     ++    +
Sbjct: 492 ILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEVLAAALEQARKGRMHILGKLTE 550

Query: 237 VISNE 241
            I+  
Sbjct: 551 CIAEP 555



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 87/236 (36%), Gaps = 28/236 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R+I +      K A+GS +VK GDT LL T       +          ++    A  G  
Sbjct: 20  RQIEIETGKLAKQADGSVVVKMGDTMLLGTVVAAKDAKPDTDFMPLQVEYKEKYAAVGRF 79

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KREA   R       + R+I RALR +         ++ +  ++I AD   +
Sbjct: 80  P---GGFMKREA---RANDSEVLVARLIDRALRPLFPAD--YHAEVYVTVNLISADKDIQ 131

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                       D L  +   +          G ++ +      G   ++  Y E    D
Sbjct: 132 -----------PDALAGLAASAALAVSDIPFGGPISEVRVVRRNGEYAINPTYSEMPECD 180

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           +D   V     +I+ V+G  E    S++     +  A + I     +Q + +S E+
Sbjct: 181 LDI-MVGGTIDNILMVEG--EMKEVSEEVMLGAIKFAHEEIKKHCAVQIE-LSKEL 232


>gi|226493578|ref|NP_001146202.1| hypothetical protein LOC100279772 [Zea mays]
 gi|219886165|gb|ACL53457.1| unknown [Zea mays]
          Length = 733

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 91/244 (37%), Gaps = 11/244 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           +R+ GRQ +++R +           GS L   GDT +L T TL         ++  G   
Sbjct: 129 LRVDGRQLDEVRPLYCESNTYPLLHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPT 188

Query: 58  -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S     KR  ++ R+ G       +  +AL +V+   +     + ++ 
Sbjct: 189 KRFMLHYSFPPFSIDEVAKRGGLNRREVGHGT----LAEKALLAVLPPESDFPYTVRVNA 244

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ +DG T  A++ G  +AL D    + +      +   L   V   +  +     + D
Sbjct: 245 EVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVG--LVSQVDPATGDISNYRILTD 302

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I  +Q   + A    D     L  A+     ++     
Sbjct: 303 ILGLEDHLGDMDFKIAGTRKG-ITAIQLDIKPAGIPLDIICESLEPARKARNQILDRMDQ 361

Query: 237 VISN 240
            IS 
Sbjct: 362 EIST 365


>gi|153951894|ref|YP_001397657.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|187610250|sp|A7H2C7|PNP_CAMJD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|152939340|gb|ABS44081.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 718

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 22/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
           R  GR  N++R IS+   +   A GSCL   G T  L  ATL  +    +      +N  
Sbjct: 335 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 394

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G     +A   R+ G       +  RAL   VD +      I + 
Sbjct: 395 SERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSVDEN--YPYVIRLV 448

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A + G  +AL               +  + + +  A+         + 
Sbjct: 449 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAV---------LT 499

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     +  G I  +Q   +     Q+     L  AK+    ++ + +
Sbjct: 500 DIMGLEDHDGDMDFKVAGSKDG-ITALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 558

Query: 236 DV 237
           + 
Sbjct: 559 EA 560



 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 85/242 (35%), Gaps = 61/242 (25%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72
           V+K A G  L++ G + +L T   EEK            +T +Y       G +P   G 
Sbjct: 19  VAKQATG-VLMRQGKSVVLATVAREEKQ----VEEDFLPLTVQYIEKAYAAGKIP---GG 70

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            VKRE    +         R+I R+LR +         QI++   V+ AD     +  ++
Sbjct: 71  YVKRET---KPSDAETLTARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPKVDLQVMSL 125

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
             A VAL+     M             K  V  +  G + G  I++ +  E     +D  
Sbjct: 126 NAASVALYLSDIPM-------------KAPVCGVRIGKIDGNFILNPNNEELQNSTLDL- 171

Query: 191 FVMTDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKD 225
           +V      ++ ++  A     E   F                    S+D     LNLA+ 
Sbjct: 172 YVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQK 231

Query: 226 RI 227
            I
Sbjct: 232 AI 233


>gi|229544442|ref|ZP_04433500.1| Polyribonucleotide nucleotidyltransferase [Bacillus coagulans 36D1]
 gi|229324927|gb|EEN90604.1| Polyribonucleotide nucleotidyltransferase [Bacillus coagulans 36D1]
          Length = 704

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 88/248 (35%), Gaps = 26/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    V     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKIDEIRPLSSEVGVLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGIEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G            G R      +  RAL  V+         I +  
Sbjct: 375 KRFMHHYNFPSFSVGE----TGPMRGPGRREIGHGALGERALEPVIPDEKEFPYTIRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGI-------------PIKAPVAGIAMGLVKSGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   + A  S++     L  A+     ++ 
Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTSKG-VTALQMDIKIAGLSREILEEALQQARKGRMQILD 536

Query: 233 LQKDVISN 240
                IS 
Sbjct: 537 HMMSTISK 544



 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 91/233 (39%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ LV++G+T +L   TA+ E K V  +     +       G +P
Sbjct: 15  RPLTVEIGQLAKQANGAALVRYGETAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D     
Sbjct: 75  ---GGFIKRE---GRPSEKAILSSRLIDRPIRPLFADGFRNEVQVVSMVMSVDQDCTPEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A +  G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------VSDIPFEGPIAGVIVGRVDGKFLINPTVEQMEKSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 T    I  V+  A+     ++     +    + I  LI  Q+ +++ 
Sbjct: 176 HLTVAGTKDA-INMVEAGAKEVP--EEVMLEAIMFGHEEIKRLIAFQEKIVAE 225


>gi|187929298|ref|YP_001899785.1| polynucleotide phosphorylase/polyadenylase [Ralstonia pickettii
           12J]
 gi|226702680|sp|B2U7R6|PNP_RALPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187726188|gb|ACD27353.1| Polyribonucleotide nucleotidyltransferase [Ralstonia pickettii 12J]
          Length = 724

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 97/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L  A L    +E++   ++     
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSSLFTRGETQALVVAALGTKSDEQIIDALQGEYRD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL  V+  +      I +  +
Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREVGHG----RLAKRALIPVLPPADEFGYTIRLVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    ++       +  +L+ +  A+         + D+
Sbjct: 433 ITESNGSSSMASVCGGSLALMDAGVPIKAHVAGVAMGLILEDNKFAV---------LTDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     TD+G I  +Q   +    +++     L  AK+    ++   +  
Sbjct: 484 LGDEDHLGDMDFKVAGTDAG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQAA 542

Query: 238 ISN 240
           +  
Sbjct: 543 MGG 545



 Score = 75.1 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 80/232 (34%), Gaps = 34/232 (14%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ +    +++ A G+ L+   DT +L T       +     +     +   T   G +P
Sbjct: 17  KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLTVDYLEKTYAAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR         R+I R LR +         Q++I   V+        
Sbjct: 77  ---GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVI--HVL-------- 120

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            +I     A  D    +   +          G V A   G   G  +++ +  + +  D+
Sbjct: 121 -SINPEVPA--DIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 177

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232
           D     T+   ++     +E    S++            + +A + I DL++
Sbjct: 178 DLVVAGTERAVLMV---ESEAQQLSEEIMLGAVVYGHEQMQIAINAIHDLVR 226


>gi|78044607|ref|YP_360578.1| polynucleotide phosphorylase/polyadenylase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|123575939|sp|Q3ABA6|PNP_CARHZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|77996722|gb|ABB15621.1| polyribonucleotide nucleotidyltransferase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 731

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 97/250 (38%), Gaps = 28/250 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +R+ GR+ +++R I     +     GS L   G T +L+  TL     + I +     + 
Sbjct: 325 IRIDGRKTDEVRPIWCEVGLLPRTHGSGLFTRGQTQVLSIVTLGAVGDVQILDDLGIEES 384

Query: 57  GWITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                 Y   P S G  R  R       G R      +  RAL  V+    +    I I 
Sbjct: 385 KRFMHHYNFPPYSVGEVRPMRG-----PGRREIGHGALAERALEPVIPPEEVFPYTIRIV 439

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V++++G T   ++ G+ +AL D                 +K  VA ++ G++      
Sbjct: 440 SEVLESNGSTSMGSVCGSTLALMDAGV-------------PIKAPVAGVAMGLIKEGDEV 486

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED+  D+D     T  G I  +Q   + A  ++D     L  A++    ++
Sbjct: 487 AILTDIQGIEDALGDMDFKVAGTKDG-ITALQMDIKIAGVTRDILTKALAQAREGRMHIL 545

Query: 232 KLQKDVISNE 241
               +VIS  
Sbjct: 546 GKMLEVISEP 555



 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 80/226 (35%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R + LT   V+  A GS LV +GDT +L TAT      E +  +     +       G +
Sbjct: 17  RPLKLTAGKVATQASGSVLVSYGDTVVLVTATGSKEPREGIDFFPLTVDYEERFYAVGKI 76

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   ++    R+I R +R +          I+     +  D    
Sbjct: 77  P---GGFIKRE---GRPSEKAILSARLIDRPIRPLFPKGFKNDVHIVATVLSVNQDNPPE 130

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA  AL                     G + A+  G++    +++    +     
Sbjct: 131 IAAMNGASAAL-------------TLSHLPFLGPIGAVVVGLVEDELVINPTIEQAEKSR 177

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ V+  A+     ++     +    + +  ++ 
Sbjct: 178 LHLVVAGTRDA-VMMVEAGAQEVP--EEIMIEAITRGHEEVKKIVA 220


>gi|163784067|ref|ZP_02179020.1| polynucleotide phosphorylase/polyadenylase [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159880666|gb|EDP74217.1| polynucleotide phosphorylase/polyadenylase [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 708

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 87/249 (34%), Gaps = 27/249 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKH 56
           R+ GR+ +++R I +   +     GS L   G T  L   TL                + 
Sbjct: 316 RIDGRKPDEIRPIWIKVGMLPRVHGSALFTRGQTQALGVVTLGAPGEEQIEESIEEGEEK 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      A S R+ G       +  RAL  ++         I +  
Sbjct: 376 KRFMLHYNFPPFSVGEARPPRAPSRREIGHG----ALAERALEPLIPSEEDFPYVIRVVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++++++G T  A +    ++L D    M+              HVA I+ G+L       
Sbjct: 432 EILESNGSTSMATVCAGSLSLFDAGVPMQK-------------HVAGIAMGLLKEEDEYI 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  A+     ++ 
Sbjct: 479 ILTDILGDEDHLGDMDFKVAGTRDG-VTAIQMDIKIKGLTKEILEKALQQARKARFHILD 537

Query: 233 LQKDVISNE 241
           L  + I   
Sbjct: 538 LMYEAIPQP 546



 Score = 96.7 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 91/241 (37%), Gaps = 35/241 (14%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHGWITAEYGMLP 67
           EIS+      K A G+ +VK G+T +   A +  +    I       ++   T  YG +P
Sbjct: 19  EISIETGYFAKQANGAVIVKSGETEVFVAAVVSSEAQPDIDFLPLTVEYREKTYAYGKIP 78

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125
              G  VKRE   G+   R   + R+I R +R +          +II    + AD     
Sbjct: 79  ---GGFVKRE---GKPSNREILVSRLIDRPIRPLFPKGF--HNDVIITAMTLSADDKNDP 130

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AITG   AL                    +G +A +    + G  I +  Y E    
Sbjct: 131 DVLAITGVSAAL-------------MISEAPFEGPIAGVRVARVDGKFIANPTYEERDKS 177

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL----IKLQKDVISNE 241
           D+D     T    IV V+G +E     ++     +  A + I  L    I+LQK V   +
Sbjct: 178 DMDIVVAGTKDA-IVMVEGGSEEVP--EEEILEAIMFAHEHIKQLIDFQIELQKKVGKEK 234

Query: 242 V 242
           +
Sbjct: 235 I 235


>gi|294464676|gb|ADE77845.1| unknown [Picea sitchensis]
          Length = 256

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 81/241 (33%), Gaps = 22/241 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GRQ  + R   +       A GS   +FG T ++ +     +       +  G + 
Sbjct: 31  IRSDGRQLLECRLAFMKTGAVNAAAGSAYAEFGSTKVIVSVFGPRESSKAQIYSDTGRLN 90

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
                   ST  R K       QG   +E   M+ +AL   V L+      + +   V++
Sbjct: 91  CSVSFATFSTPIRGK-----LSQGTEHREYSTMLHKALEGAVMLNTFPKATVDVFALVLE 145

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           + GG     IT A +AL D    M D  +   +S              +    I+D    
Sbjct: 146 SGGGDLPVVITCATLALADAGIMMFDVVSAVSVS-------------SIGKSLIIDPTTE 192

Query: 181 EDSTID-VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           E++  D             I ++  + E   +S       L L  D  + L  + +  + 
Sbjct: 193 EENCQDGGLMVACTPSRNEITQLIITGE---WSSTRVSEALELCLDACSKLAAIMRSCLK 249

Query: 240 N 240
            
Sbjct: 250 E 250


>gi|187923336|ref|YP_001894978.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           phytofirmans PsJN]
 gi|226702630|sp|B2T2E3|PNP_BURPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187714530|gb|ACD15754.1| Polyribonucleotide nucleotidyltransferase [Burkholderia
           phytofirmans PsJN]
          Length = 718

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 94/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  +  ATL  K      +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAMVVATLGTKGDEQNIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALAACLPSADEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G +  +Q   +    +++     L  AK+    ++      
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILSKMTSA 547

Query: 238 ISN 240
           +S 
Sbjct: 548 VSG 550



 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 77/233 (33%), Gaps = 36/233 (15%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    +++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 17  KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYLEKTYAAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR       I R+I R LR +         Q++I    +  +     
Sbjct: 77  ---GGFFRRE---GRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPEIPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESAL 177

Query: 188 DANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++   E Q  +E        F  +       +A D I DL++
Sbjct: 178 DLIVAGTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQ----IAIDAIHDLVR 226


>gi|145589238|ref|YP_001155835.1| polynucleotide phosphorylase/polyadenylase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|187610308|sp|A4SXQ7|PNP_POLSQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145047644|gb|ABP34271.1| 3' exoribonuclease [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 722

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 98/243 (40%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTARDEQIIDALEGEYRD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL  V+  +   +  I +  +
Sbjct: 376 RFMFHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPSAEDFAYSIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +A+ D    ++       +  +L G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLAMMDAGVPVKAHVAGVAMGLILDGNRFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T +G I  +Q   +    +++     L  AK+    ++   ++ 
Sbjct: 483 LGDEDHLGDMDFKVAGTANG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILSKMQEA 541

Query: 238 ISN 240
           + +
Sbjct: 542 MGS 544



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 79/232 (34%), Gaps = 34/232 (14%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
           ++++    +++ + G+ +V   DT ++ T     + +     +     +   T   G +P
Sbjct: 17  QVTMETGEIARQSGGAVIVNVDDTVVMGTVVASKSAKPGQSFFPLTVDYLEKTYAAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR       I R+I R LR +     L   Q++I    I  D     
Sbjct: 77  ---GGFFRRE---GRPSEGETLISRLIDRPLRPLFPEGFLNEVQVVIHVLSINPD----- 125

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                      D    +   +          G V A   G   G  +++    E +T ++
Sbjct: 126 --------VPSDIPALIAASAALAISGIPFAGPVGAARVGYANGQYLLNPTRTEQATSEL 177

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232
           D     T +  ++     +E    S++            +  A + I +L+ 
Sbjct: 178 DLIVAGTQAAVLMV---ESEANQLSEEVMLGAVVYGHDQMQTAINAINELVA 226


>gi|209518519|ref|ZP_03267340.1| Polyribonucleotide nucleotidyltransferase [Burkholderia sp. H160]
 gi|209501064|gb|EEA01099.1| Polyribonucleotide nucleotidyltransferase [Burkholderia sp. H160]
          Length = 711

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 94/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K      +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQSIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSADEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNRFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G +  +Q   +    +++     L  AK+    ++      
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547

Query: 238 ISN 240
           ++ 
Sbjct: 548 VAG 550



 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 75/233 (32%), Gaps = 36/233 (15%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
            + L    +++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 17  NVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYLEKTYAAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR       I R+I R LR +         Q++I    +  +     
Sbjct: 77  ---GGFFRRE---GRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPEIPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYINNEYVLNPTRLQMKESAL 177

Query: 188 DANFVMTDSGHIV---EVQGSAER-----ATFSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++   E Q  +E        F  +     ++     I +L++
Sbjct: 178 DLVVAGTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQTAID----AIHELVR 226


>gi|156543904|ref|XP_001607068.1| PREDICTED: similar to polyribonucleotide nucleotidyltransferase
           [Nasonia vitripennis]
          Length = 765

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 90/248 (36%), Gaps = 17/248 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR+   +R I+    + K   GS L + G T +L T TL+        + + M    
Sbjct: 356 RCDGRKYTDLRNITCQVDLFKPLHGSALFQRGQTQVLCTVTLDSPDSALKMDTMSMLSSG 415

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    +    +G  G R      +  R LR+++         I 
Sbjct: 416 VKEKNFFLHYEFPPYATNETGR----TGPVGRREMGHGALAERGLRAILPKE--YPFTIR 469

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A++ G  +AL D    +   +    +  V K      +  +     
Sbjct: 470 LTSEVLESNGSSSMASVCGGSLALMDAGVPIAAPAAGVAIGLVTKYD--KDTKHIKDYKI 527

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +            L  A +    ++ +
Sbjct: 528 LTDILGIEDYLGDMDFKIAGTKKG-VTALQADIKIPGLPLKIVMESLEQATEAKTQILNI 586

Query: 234 QKDVISNE 241
             + IS  
Sbjct: 587 MNEAISKP 594



 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 75/222 (33%), Gaps = 28/222 (12%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
            ++ A+G  +   GDT ++ T    +    V  ++       +  +Y     + G R+  
Sbjct: 60  YARLADGCAVATLGDTSVMVTTVSKSQSSGVNSFLP------LVVDYRQKAAAAG-RIPT 112

Query: 77  EAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
                  G    EI   R+I R+LR +         Q++ +   +  +      +I GA 
Sbjct: 113 NFFRRELGHTEHEILTSRLIDRSLRPLFPQKYNYETQVVCNMLALDGNNDPDVLSINGAS 172

Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT 194
            AL                     G V A+  G++    +++    E     ++     T
Sbjct: 173 AALA-------------VSDIPWNGPVGAVRVGLIDNEVLINPTRREIQQSSLNLIVTAT 219

Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQK 235
               +V ++GSA+            L         +++ +QK
Sbjct: 220 QQNLVVMLEGSADNILVP--ELRKALKAGVKECQIIVQSIQK 259


>gi|95929621|ref|ZP_01312363.1| Polyribonucleotide nucleotidyltransferase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95134318|gb|EAT15975.1| Polyribonucleotide nucleotidyltransferase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 699

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 95/244 (38%), Gaps = 20/244 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-----TATLEEKVPMWIRNTK 55
           +R+ GR+ N++R IS    V   A GS L   G+T  L      TA+ E+++   I+  +
Sbjct: 312 IRIDGRKMNEIRPISCEVGVLPRAHGSALFTRGETQALVSTTLGTASDEQRMDN-IQGME 370

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P   G    R     R+ G       +  R+   ++         + I 
Sbjct: 371 FKKFMLHYNFPPFCVGETSMRLFPGRREIGHGM----LAERSATKIMPEFDDFPYTVRIV 426

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A++ GA ++L D     +D      +  + +G   AI         + 
Sbjct: 427 SEILESNGSSSMASVCGASMSLMDAGVPAKDAVAGIAMGLIKEGDDIAI---------LS 477

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T  G +  +Q   +    ++D     L  AK+    ++    
Sbjct: 478 DILGDEDHLGDMDFKVTGTKEG-VAALQMDIKIDGVTRDIMQRALAQAKEGRLHILGEMA 536

Query: 236 DVIS 239
             IS
Sbjct: 537 KAIS 540



 Score = 95.9 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 84/227 (37%), Gaps = 27/227 (11%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
            +++      + A+G+ +V +G+T +L T     T+ E    +     +       G +P
Sbjct: 14  PLTIETGKMARQADGATIVTYGETKILCTVVSAKTMREGQDFFPLTVNYQEKFYASGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G+  +RE  +     R   I R+I R +R +     L   QII    VI AD     
Sbjct: 74  ---GSFFRRERGA---TERETLICRLIDRPMRPLFPKGYLYETQIIPT--VISAD----- 120

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                  V   D L  +   ++         G +A +  G + G  I +    +    D+
Sbjct: 121 ------CVNDPDTLSILAASASVSVSDIPFGGPIAGVRVGRVDGEFIANPTLEQQEQSDI 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           +   V      I+ V+G  E    S+D     +      I  LI++Q
Sbjct: 175 EI-VVAGSKDAIMMVEG--EADLISEDEMLEAVFFGHQAIQPLIEMQ 218


>gi|158300785|ref|XP_552338.3| AGAP011906-PA [Anopheles gambiae str. PEST]
 gi|157013328|gb|EAL38841.3| AGAP011906-PA [Anopheles gambiae str. PEST]
          Length = 308

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 71/184 (38%), Gaps = 18/184 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R+      V   A+GS  V+ G+T ++ +     ++P   +  + G +  
Sbjct: 43  RKDGRRLQESRKYYAKIGVVSTAKGSAYVELGNTKVIVSVFDPREIPKQNKFCELGELFC 102

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           +    P +   R   +        R + +   +  AL   V      + QI +  +V++ 
Sbjct: 103 DLKFSPFAPAVRKTHQT-----DARERSMTAALTSALNPSVCRHLFPNLQIDVFANVLED 157

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DG     AIT A +AL D    M D              V A + G+L    ++D    E
Sbjct: 158 DGSALAVAITAAGLALGDACVPMFDI-------------VTAATAGVLGDRVVMDPTAEE 204

Query: 182 DSTI 185
           ++  
Sbjct: 205 EALC 208


>gi|171463523|ref|YP_001797636.1| Polyribonucleotide nucleotidyltransferase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|226702675|sp|B1XUJ5|PNP_POLNS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|171193061|gb|ACB44022.1| Polyribonucleotide nucleotidyltransferase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 722

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 98/243 (40%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTARDEQIIDVLEGEYRD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL  V+  +   +  I +  +
Sbjct: 376 RFMFHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPSAEDFAYSIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +A+ D    ++       +  +L G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLAMMDAGVPVKAHVAGVAMGLILDGNRFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T +G I  +Q   +    +++     L  AK+    ++   ++ 
Sbjct: 483 LGDEDHLGDMDFKVAGTANG-ITALQMDIKVQGITKEIMQVALAQAKEGRLHILSKMQEA 541

Query: 238 ISN 240
           + +
Sbjct: 542 MGS 544



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 80/231 (34%), Gaps = 34/231 (14%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
           ++++    +++ A G+ +V   DT ++ T     + +     +     +   T   G +P
Sbjct: 17  QVTMETGEIARQAGGAVIVNVDDTVVMGTVVASKSAKPGQSFFPLTVDYLEKTYAAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR       I R+I R LR +     L   Q+++    I  D     
Sbjct: 77  ---GGFFRRE---GRPSEGETLISRLIDRPLRPLFPEGFLNEVQVVVHVLSINPD----- 125

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                      D    +   +     S    G V A   G   G  +++    E +T ++
Sbjct: 126 --------VPSDIPALIAASAALAVSSIPFAGPVGAARVGYANGQYLLNPTRTEQATSEL 177

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLI 231
           D     T +  ++     +E    S++            +  A + I DL+
Sbjct: 178 DLIVAGTQAAVLMV---ESEANQLSEEVMLGAVVYGHDQMQTAINAINDLV 225


>gi|74316711|ref|YP_314451.1| polynucleotide phosphorylase/polyadenylase [Thiobacillus
           denitrificans ATCC 25259]
 gi|123759157|sp|Q3SKX5|PNP_THIDA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|74056206|gb|AAZ96646.1| polyribonucleotide nucleotidyltransferase protein [Thiobacillus
           denitrificans ATCC 25259]
          Length = 706

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 98/247 (39%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I++   V   A GS L   G+T  L   TL           +  +   
Sbjct: 315 RIDGRDTRTVRPITIRTGVLPRAHGSALFTRGETQALVVTTLGTGRDEQTIDALEGSYSD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL +V+         + +  +
Sbjct: 375 RFMLHYNMPPYATGETGRVGSPKRREIGHG----RLAKRALLAVLPSKEEFGYTMRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  ++L D                 LK HVA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGGCLSLMDAGA-------------PLKAHVAGIAMGLIKEGNRFAV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G +  +Q   +    +++   A L  AK+    ++ +
Sbjct: 478 LTDILGDEDHLGDMDFKVAGTENG-VTALQMDIKITGITKEIMQAALTQAKEGRMHILGI 536

Query: 234 QKDVISN 240
            K  +S 
Sbjct: 537 MKASVSE 543



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 78/230 (33%), Gaps = 34/230 (14%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
           +++L    +++ A G+ +V   DT +L T   + +V      +     +   T   G +P
Sbjct: 14  QVTLETGEIARQASGAVVVNMDDTMVLVTVVAKNEVKPGQDFFPLTVDYQEKTYAAGRIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE+   R       I R+I R +R +         QII        +     
Sbjct: 74  ---GGFLKRES---RPSEGETLISRLIDRPIRPLFPEGFFNEVQIIATVMSSNPEVSADI 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A   G + G  +++    E     +
Sbjct: 128 PALIGASAALSLSGL-------------PFDGPVGAARVGFINGEYVLNPTNAELKDSAL 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADL 230
           D     T+S  ++     +E     +D            +  A + I +L
Sbjct: 175 DLVVAGTESAVLMV---ESEAMELPEDIMLGAVVFGHTQMQAAINAINEL 221


>gi|296160625|ref|ZP_06843440.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. Ch1-1]
 gi|295889151|gb|EFG68954.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. Ch1-1]
          Length = 716

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K      +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALAACLPSADEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G +  +Q   +    +++     L  AK+    ++      
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRLHILGKMTSA 547

Query: 238 ISN 240
           +S 
Sbjct: 548 VSG 550



 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 77/233 (33%), Gaps = 36/233 (15%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    +++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 17  KVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYLEKTYAAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR       I R+I R LR +         Q++I    +  +     
Sbjct: 77  ---GGFFRRE---GRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPEIPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESAL 177

Query: 188 DANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++   E Q  +E        F  +       +A D I DL++
Sbjct: 178 DLIVAGTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQ----IAIDAIHDLVR 226


>gi|295676033|ref|YP_003604557.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1002]
 gi|295435876|gb|ADG15046.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
           CCGE1002]
          Length = 711

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K      +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQSIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVACLPSADEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNRFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G +  +Q   +    +++     L  AK+    ++      
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547

Query: 238 ISN 240
           +S 
Sbjct: 548 VSG 550



 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 75/232 (32%), Gaps = 36/232 (15%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           + L    +++ A G+ +V   DT +L T       +     +     +   T   G +P 
Sbjct: 18  VRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYIEKTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR       I R+I R LR +         Q++I    +  +      
Sbjct: 77  --GGFFRRE---GRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPEIPADIP 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G V A     +    +++    +     +D
Sbjct: 132 ALIGASAALA-------------VSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALD 178

Query: 189 ANFVMTDSGHIV---EVQGSAER-----ATFSQDHFFAMLNLAKDRIADLIK 232
                T+   ++   E Q  +E        F  +     ++     I +L++
Sbjct: 179 LVVAGTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQTAID----AIHELVR 226


>gi|171316299|ref|ZP_02905520.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
           MEX-5]
 gi|171098525|gb|EDT43326.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
           MEX-5]
          Length = 714

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL   +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVKCLPSADEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G +  +Q   +    +++     L  AK+    ++      
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547

Query: 238 ISN 240
           +S 
Sbjct: 548 VSG 550



 Score = 75.1 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 76/234 (32%), Gaps = 38/234 (16%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    V++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 17  KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR         R+I R LR +         Q++I    +  +     
Sbjct: 77  ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSL 177

Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++ V+  A++           F  +     ++     I +L++
Sbjct: 178 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 226


>gi|78067050|ref|YP_369819.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. 383]
 gi|123742554|sp|Q39EE1|PNP_BURS3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|77967795|gb|ABB09175.1| 3' exoribonuclease [Burkholderia sp. 383]
          Length = 715

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL   +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVKCLPSADEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G +  +Q   +    +++     L  AK+    ++      
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547

Query: 238 ISN 240
           +S 
Sbjct: 548 VSG 550



 Score = 75.5 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 76/232 (32%), Gaps = 34/232 (14%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    V++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 17  KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR         R+I R LR +         Q++I    +  +     
Sbjct: 77  ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSL 177

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232
           D     T+   ++     +E    S+D            + +A D I +L++
Sbjct: 178 DLVVAGTERAVLMV---ESEADQLSEDVMLGAVVFGHEQMQVAIDAIHELVR 226


>gi|115352342|ref|YP_774181.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ambifaria
           AMMD]
 gi|172061213|ref|YP_001808865.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ambifaria
           MC40-6]
 gi|122322637|sp|Q0BDC6|PNP_BURCM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702626|sp|B1YTR1|PNP_BURA4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|115282330|gb|ABI87847.1| 3' exoribonuclease [Burkholderia ambifaria AMMD]
 gi|171993730|gb|ACB64649.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
           MC40-6]
          Length = 714

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL   +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVKCLPSADEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G +  +Q   +    +++     L  AK+    ++      
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547

Query: 238 ISN 240
           +S 
Sbjct: 548 VSG 550



 Score = 75.1 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 76/234 (32%), Gaps = 38/234 (16%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    V++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 17  KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR         R+I R LR +         Q++I    +  +     
Sbjct: 77  ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSL 177

Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++ V+  A++           F  +     ++     I +L++
Sbjct: 178 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 226


>gi|167043480|gb|ABZ08177.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
           microorganism HF4000_APKG2H5]
          Length = 264

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 92/241 (38%), Gaps = 16/241 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R SGR   + R+  L   V   AEGS  V+ GDT +     L+  VP +      G +  
Sbjct: 23  RHSGRGRWEARDTELEIGVLPRAEGSARVRMGDTIVYAGVKLQIMVP-YPDRPNQGGLMC 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSR--QII 113
              + P +  N        G     S E+ R++ R +R    +D+  L    G +  Q+I
Sbjct: 82  SAEVRPVAGPN-----WEPGPPSPESIELGRVVDRGIRESGCIDVDGLCLIPGEKAWQVI 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-LKGHVAAISCGMLCGY 172
           +D   I  DG    A       A+   +   E      +   + +       S   + G 
Sbjct: 137 LDLFAISDDGNLFDAFALAGIAAMRTAMIPEERFEISGEDRPLNISKTPIMCSYHKVGGR 196

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D D  E+   D   +  + D GH+  +Q    R  F+   F  ++  A+ R  +L +
Sbjct: 197 FVYDADGREELGGDERIHITLGDDGHVHSLQK-GLRGIFTASEFTEIMEHAQSRCNELRE 255

Query: 233 L 233
           +
Sbjct: 256 M 256


>gi|170698105|ref|ZP_02889185.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
           IOP40-10]
 gi|170136963|gb|EDT05211.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
           IOP40-10]
          Length = 714

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL   +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVKCLPSADEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G +  +Q   +    +++     L  AK+    ++      
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547

Query: 238 ISN 240
           +S 
Sbjct: 548 VSG 550



 Score = 75.1 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 76/234 (32%), Gaps = 38/234 (16%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    V++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 17  KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR         R+I R LR +         Q++I    +  +     
Sbjct: 77  ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSL 177

Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++ V+  A++           F  +     ++     I +L++
Sbjct: 178 DLVVAGTERA-VLMVESEADQLPEDVMLGAVVFGHEQMQTAID----AIHELVR 226


>gi|322792608|gb|EFZ16508.1| hypothetical protein SINV_11514 [Solenopsis invicta]
          Length = 282

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/203 (23%), Positives = 77/203 (37%), Gaps = 19/203 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  N+ R I L   +   A+GS  ++ G+T ++ +     ++P        G +  
Sbjct: 37  RHDGRSHNEFRNIFLKTGIVSQAKGSAYIEIGNTKIICSVFDPREIPNKTGYCVQGELFC 96

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           E+   P S   R   +     Q    +E   ++ RAL   V L    + Q+ +   VI  
Sbjct: 97  EFKFAPFSHRKRKLHQ-----QDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVIDN 151

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
            G    AAI  A +AL +    M              G V A + G+     +VD    E
Sbjct: 152 GGSALAAAIMAASLALANAGVPMF-------------GLVTASTVGICDQTYLVDPTDTE 198

Query: 182 DSTIDVDANFVMTDSGHIVEVQG 204
           ++   +       D+  I+ VQ 
Sbjct: 199 EAFCSIKTAQGTADNHGII-VQA 220


>gi|134296437|ref|YP_001120172.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           vietnamiensis G4]
 gi|187470949|sp|A4JGD4|PNP_BURVG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|134139594|gb|ABO55337.1| 3' exoribonuclease [Burkholderia vietnamiensis G4]
          Length = 715

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL   +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVKCLPSADEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G +  +Q   +    +++     L  AK+    ++      
Sbjct: 489 LGDEDHLGDMDFKVAGTEHG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 547

Query: 238 ISN 240
           +S 
Sbjct: 548 VSG 550



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 75/232 (32%), Gaps = 34/232 (14%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    V++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 17  KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR         R+I R LR +         Q++I    +  D     
Sbjct: 77  ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPDIPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSL 177

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232
           D     T+   ++     +E     +D            + +A D I +L++
Sbjct: 178 DLVVAGTERAVLMV---ESEADQLPEDVMLGAVVFGHEQMQIAIDAIHELVR 226


>gi|56478759|ref|YP_160348.1| polynucleotide phosphorylase/polyadenylase [Aromatoleum aromaticum
           EbN1]
 gi|81356612|sp|Q5NZR7|PNP_AZOSE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56314802|emb|CAI09447.1| polyribonucleotide nucleotidyltransferase protein [Aromatoleum
           aromaticum EbN1]
          Length = 699

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 95/244 (38%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R I +   V     GS L   G+T  L  ATL       I +   G    
Sbjct: 316 RIDGRDTRTVRPIDIRVGVLPRTHGSALFTRGETQALVIATLGTGRDEQIIDAIAGEYRE 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +      R+ G      R+  RAL + +      S  + +  +
Sbjct: 376 SFLLHYNFPPFSTGETGRMGVTKRREVGHG----RLAKRALIAALPADEDFSYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +A+ D    M+       +  + +G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGASLAMMDAGVPMKAHVAGIAMGLIKEGNRFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   +    +++     L  A +    ++ L K  
Sbjct: 483 LGDEDHLGDMDFKVAGTENG-ITALQMDIKIQGITKEIMQVALAQAGEGRIHILALMKQA 541

Query: 238 ISNE 241
           +++ 
Sbjct: 542 LASH 545



 Score = 72.4 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 79/232 (34%), Gaps = 34/232 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ +V   DT +L T       +     +     +       G +P 
Sbjct: 16  VTLETGEIARQAGGAVIVNMDDTIVLATVVAAKEAKAGQDFFPLTVDYVEKFYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +     R+I R +R +         Q+II    +  +      
Sbjct: 75  --GGFFKRE---GRPTEKETLTSRLIDRPIRPLFPEGFYNEVQVIITVLSLNPEVDPDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G   G  +++    +    +++
Sbjct: 130 AMIGASAALA-------------ISGVPFDGPIGACRVGYSGGQYLLNPTVEQLKASELN 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233
                T++  ++     +E    S++            + +A   I +L+++
Sbjct: 177 LVVAGTEAAVLMV---ESEARELSEEVMLGAVVFGHQQMQVAIRAINELVEV 225


>gi|71018287|ref|XP_759374.1| hypothetical protein UM03227.1 [Ustilago maydis 521]
 gi|46099099|gb|EAK84332.1| hypothetical protein UM03227.1 [Ustilago maydis 521]
          Length = 273

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 86/244 (35%), Gaps = 23/244 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSK--YAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHG 57
            R+ GR++ ++R I +    S+   A+G   +  G T +  T     +            
Sbjct: 12  FRIDGRKQFELRSIGIQLGGSQDTAADGCAQITQGLTIVSATVFGPREARSGANVMHDRA 71

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +  E  + P  +  R +R     R      E    I      V+        QI I   
Sbjct: 72  SVNVEVSVAPWGSMERRRRNRGDRRL----VEFANSIKSTFEPVIHTHLYPRSQIDIFVQ 127

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V Q DGG   AAI  + +AL D    M+D              VA++SCG+     ++DL
Sbjct: 128 VHQQDGGVLPAAINASTLALLDAGIAMQD-------------FVASVSCGIHSTSAMLDL 174

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              E+  +      V+  +  I     ++       + F  +  LA   +A L    +  
Sbjct: 175 SNTEEQDLPHVTVAVLPRTKQITL---ASLETRLHVERFEQIFTLAIQAVAVLHNEMELA 231

Query: 238 ISNE 241
           + + 
Sbjct: 232 VRDR 235


>gi|206560707|ref|YP_002231472.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           cenocepacia J2315]
 gi|257096670|sp|B4E5M6|PNP_BURCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|198036749|emb|CAR52649.1| polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia
           J2315]
          Length = 713

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 320 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL   +  +      I +  +
Sbjct: 380 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVKCLPSADEFGYSIRVVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 436 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 486

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G +  +Q   +    +++     L  AK+    ++      
Sbjct: 487 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSA 545

Query: 238 ISN 240
           +S 
Sbjct: 546 VSG 548



 Score = 75.5 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 76/232 (32%), Gaps = 34/232 (14%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    V++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 15  KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR         R+I R LR +         Q++I    +  +     
Sbjct: 75  ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 129 PALIGASAALA-------------VSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232
           D     T+   ++     +E    S+D            + +A D I +L++
Sbjct: 176 DLVVAGTERAVLMV---ESEADQLSEDVMLGAVVFGHEQMQIAIDAIHELVR 224


>gi|85373534|ref|YP_457596.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter litoralis
           HTCC2594]
 gi|123409685|sp|Q2NBZ2|PNP_ERYLH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|84786617|gb|ABC62799.1| polyribonucleotide nucleotidyltransferase [Erythrobacter litoralis
           HTCC2594]
          Length = 769

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 96/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR+ +++R I     +     GS L   G+T  + T TL     E++   +    + 
Sbjct: 320 RIDGRKTDEVRPIEAMVGLLPRTHGSALFTRGETQAICTTTLGTKDSEQMIDGLEGLSYS 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +    S R+ G      ++  RALR V+  +      I +  D
Sbjct: 380 NFMLHYNFPPYSVGEVGRFGFTSRRETGHG----KLAFRALRPVLPDNEEFPYTIRVLSD 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +++ D    ++   +   +  +L+G              + D+
Sbjct: 436 ITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGD---------DFTVLSDI 486

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     ++ G I  +Q   + A  +Q+     L  AK   A ++    + 
Sbjct: 487 LGDEDHLGDMDFKVAGSEEG-ITSLQMDIKVAGITQEIMTKALEQAKAGRAHILGKMTEA 545

Query: 238 ISN 240
           + +
Sbjct: 546 LGS 548



 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 78/237 (32%), Gaps = 41/237 (17%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           ++L    +++ A+G+ L  +G+T +L   T    V           +T  Y     S   
Sbjct: 16  LTLETGQIARQADGAVLATYGETVVLCAVTAARSV---KEGQDFFPLTVHYQ-EKFSAAG 71

Query: 73  RVKREAVS--GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TA 128
           R+        GR   +     R+I R +R +          I +   V+  DG T     
Sbjct: 72  RIPGGFFKREGRATEKETLTSRLIDRPVRPLFPEGFYNE--INVIAQVLSYDGETEPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYG----EDS 183
           A+  A  AL                     G + A   G    G  +++        ED 
Sbjct: 130 AMIAASAAL-------------TISGLPFMGPIGAARVGFTNDGEYVLNPSVVDALGEDG 176

Query: 184 TID----VDANFVMT---DSGHIVEVQGSAERATFSQDH----FFAMLNLAKDRIAD 229
            +D       + VM    ++  + E Q       F+ +       A+++LA+    D
Sbjct: 177 NLDLVVAATQDAVMMVESEAKELTEEQMLG-AVMFAHEESRKVIGAIIDLAEQAAKD 232


>gi|14250906|emb|CAC39258.1| Rrp41p homologue [Trypanosoma brucei]
          Length = 252

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 18/182 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59
           +RL GR++N+ R ++L        +G C V  G +H+  T     +V   +        I
Sbjct: 13  LRLDGRRQNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLDGKYNEVTI 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           T +  +   + G R +      R    S++I   +    RSVV LS   + QI I  +V+
Sbjct: 73  TCDVVVAAFA-GERRR---EQQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICIEVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           + DG  + A I  A +AL D    M D              V   + G++ G+ +VDL  
Sbjct: 129 KQDGSDKAACINAACLALIDASIAMRDV-------------VYTQTVGLIEGFDVVDLTT 175

Query: 180 GE 181
            E
Sbjct: 176 EE 177


>gi|255019829|ref|ZP_05291905.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970758|gb|EET28244.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus
           ATCC 51756]
          Length = 692

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I +   +     GS L   G+T  L  ATL  K        ++     
Sbjct: 313 RIDGRDRTTVRPIEIEVGIMPRTHGSALFTRGETQALVIATLGTKGDEQIVDALQGESRD 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG      +   R+ G      R+  RA+ +V+   +     + I  +
Sbjct: 373 RFMLHYNFPPFSTGETGMVGSPKRREIGHG----RLAKRAVAAVLPSESEFPYSLRIVSE 428

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           +++++G +  A + GA +AL D                 LK  VA ++ G++  G     
Sbjct: 429 ILESNGSSSMATVCGASLALMDAGV-------------PLKAPVAGVAMGLIKDGERYAV 475

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G +  +Q   +    +++     L  A      ++  
Sbjct: 476 LTDILGDEDHLGDMDFKVAGTENG-VTALQMDIKIDGITREIMATALEQAHAGRLHILSK 534

Query: 234 QKDVISN 240
              V++ 
Sbjct: 535 MNAVLAQ 541



 Score = 81.7 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 67/198 (33%), Gaps = 26/198 (13%)

Query: 22  KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVKRE 77
           + A+G+ LV  G+T +L TA    ++           +T  Y     + G       KRE
Sbjct: 24  RQADGAVLVTLGETMVLVTAVGRRELKP---GQDFFPLTVNYQEKAYAAGRIPGGFFKRE 80

Query: 78  AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137
              GR   +     R+I R LR +     L   Q+I     +  +      A+ GA  AL
Sbjct: 81  ---GRPTEKETLTSRLIDRPLRPLFPKGFLNEVQVIATVLSVDQENDPDIPAMIGASAAL 137

Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197
                               +G + A   G + G  +++  +   +   +D     T   
Sbjct: 138 AISGI-------------PFQGPIGAARVGYVDGDFVLNPSFSALARSQLDLVVAGTRQA 184

Query: 198 HIV---EVQGSAERATFS 212
            ++   E Q   E    S
Sbjct: 185 VLMVESEAQELPEATMLS 202


>gi|116181272|ref|XP_001220485.1| hypothetical protein CHGG_01264 [Chaetomium globosum CBS 148.51]
 gi|88185561|gb|EAQ93029.1| hypothetical protein CHGG_01264 [Chaetomium globosum CBS 148.51]
          Length = 277

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 88/255 (34%), Gaps = 26/255 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-------------- 46
           +R+ GR+ N++R ++   R    A+GS  ++ G T ++   T   +              
Sbjct: 13  LRVDGRRWNELRRVNAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGGVGGAGGG 72

Query: 47  VPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA 106
                       I     +   S+ +R +     GR   R+ E+   +  AL + +    
Sbjct: 73  GGGGGGAGGKAEIVVGIVIAGFSSVDRKRH----GRGDKRTLELASTVANALAASLHTHL 128

Query: 107 LGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC 166
               QI +   V+  DG    A I  A +A  D    M D            G  +  + 
Sbjct: 129 FPHSQINVSLHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTA-----GSTSTYAA 183

Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                 P++DL++ E+  +       + +S  +  +   +            ML +  D 
Sbjct: 184 NDEGADPLLDLNHQEEQELPGLTVATLGESDRVAVLVCESRVQV---SRLEGMLAVGVDG 240

Query: 227 IADLIKLQKDVISNE 241
              + ++   V+ ++
Sbjct: 241 CKQMREILDRVVRDK 255


>gi|218665115|ref|YP_002424891.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|257096668|sp|B7J4D8|PNP_ACIF2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218517328|gb|ACK77914.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 690

 Score =  122 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 96/246 (39%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           R+ GR    +R I++   V     GS L   G+T  L  AT     +E++   ++     
Sbjct: 311 RIDGRDSKTVRPITIEAGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALQGESRD 370

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG      +   R+ G      R+  RA+ +V+   +     + +  +
Sbjct: 371 RFMLHYNFPPFSTGETGMVGSPKRREIGHG----RLAKRAIAAVLPTDSEFPYSLRVVSE 426

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           V++++G +  A + GA +AL D                 LK  VA ++ G++        
Sbjct: 427 VLESNGSSSMATVCGASLALMDAGV-------------PLKAPVAGVAMGLIKEGARFAV 473

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G +  +Q   +    +++     L  A      ++ L
Sbjct: 474 LTDILGDEDHLGDMDFKVAGTEQG-VTALQMDIKIDGITREIMAQALQQALAGRLHILGL 532

Query: 234 QKDVIS 239
              V+S
Sbjct: 533 MNGVLS 538



 Score = 88.6 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 78/235 (33%), Gaps = 31/235 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + L      + A+G+ LV  GDT +L TA    ++           +T  Y     + 
Sbjct: 11  RRLQLETGRMARQADGAVLVSSGDTVVLVTAVGRREMKP---GQDFFPLTVNYQEKAYAA 67

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G       KRE   GR   +     R+I R +R +     +   Q+I     +  D    
Sbjct: 68  GKIPGGFFKRE---GRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVVSVDRDNDPD 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                     G + A     + G  +++  Y + +T  
Sbjct: 125 ILALVGASAALAVSGI-------------PFNGPIGAARVAYIDGKYVLNPSYAQLTTSQ 171

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
           +D     T    ++     +E    S++     +     +    I  +  L ++ 
Sbjct: 172 LDLVVAGTRQAVLMV---ESEAQQLSEEIMLEAVMFGHAQFQPVIETIEALAREA 223


>gi|20807834|ref|NP_623005.1| polynucleotide phosphorylase/polyadenylase [Thermoanaerobacter
           tengcongensis MB4]
 gi|81481549|sp|Q8RA43|PNP_THETN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|20516395|gb|AAM24609.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Thermoanaerobacter tengcongensis MB4]
          Length = 707

 Score =  122 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 57/251 (22%), Positives = 94/251 (37%), Gaps = 30/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R+ GR  + +R I     V     GS +   G T +LT AT     + ++   I + + 
Sbjct: 312 IRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGAIGDIQILEGIGDEEF 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G          R+ G       +  RAL  V+         I +  
Sbjct: 372 KRYMHHYNFPPYSVGEVRPLRGPGRREIGHG----ALAERALEPVIPSEEEFPYTIRLVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V+ ++G T  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 428 EVLSSNGSTSQASVCGSTLALMDAGV-------------PIKAPVAGIAMGLIKEEDEVL 474

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T+ G +  +Q   +     +D     L  A+   A L  
Sbjct: 475 ILTDIQGIEDFLGDMDFKVAGTEKG-VTAIQMDIKIPGIDRDILQMALEKARK--ARLYV 531

Query: 233 LQK--DVISNE 241
           LQK  +VI   
Sbjct: 532 LQKMLEVIKEP 542



 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 85/226 (37%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R++ +    V++ A G+  VK+GDT +L TA       E +  +    ++       G +
Sbjct: 13  RKLVVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEERLYSIGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R +R +         Q+I     +  D    
Sbjct: 73  P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPEGYRNDVQVIATVLSVDPDAQPE 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ VAL                     G   +++ G++ G  +++  Y +     
Sbjct: 127 IVAMIGSSVALS-------------ISDIPFNGPTGSVAVGLVDGKFVINPTYEQREKSL 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    IV V+  A+     ++     +  A   I  +++
Sbjct: 174 MHLVVSGTKDA-IVMVEAGAKEVP--EETILDAIVYAHQYIKQIVE 216


>gi|217970113|ref|YP_002355347.1| polynucleotide phosphorylase/polyadenylase [Thauera sp. MZ1T]
 gi|217507440|gb|ACK54451.1| Polyribonucleotide nucleotidyltransferase [Thauera sp. MZ1T]
          Length = 699

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 95/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL       I +   G    
Sbjct: 316 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDAIAGEYKE 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P  TG   +      R+ G      R+  R+L +++      S  + +  +
Sbjct: 376 RFLLHYNFPPFCTGETGRFGITKRREVGHG----RLAKRSLVAMLPKPEEFSYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +A+ D                 LK HVA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGGSLAMMDAGV-------------PLKNHVAGIAMGLIKDGNRFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G I  +Q   +    +++   A L  AK+    ++ L
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTENG-ITGLQMDIKIQGITKEIMHAALEQAKEGRLHILGL 537

Query: 234 QKDVISN 240
            +  +  
Sbjct: 538 MQQALGT 544



 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 78/232 (33%), Gaps = 34/232 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A G+ +V   +T +L T             +     +       G +P 
Sbjct: 16  VTLETGEVARQAGGAVIVNMDETVVLATVVGAKEARPGQDFFPLTVDYVEKFYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +     R+I R +R +     +   Q+I+    +  +  +   
Sbjct: 75  --GGFFKRE---GRPSEKEILTSRLIDRPIRPLFPDGFMNEVQVIVTVLSLNPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G V A   G L G  I++    E  +    
Sbjct: 130 AMIGASAALA-------------ISGLPFNGPVGAARVGYLDGKYILNPTATELQSS--A 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233
            N V+  +   V +  S E     +D            +  A   I DL+++
Sbjct: 175 MNLVVAGTQTAVLMVES-EAQELPEDVMLGAVVFGHEQMQTAIKAINDLVEV 225


>gi|198282699|ref|YP_002219020.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|226702590|sp|B5EMD4|PNP_ACIF5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|198247220|gb|ACH82813.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 692

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 96/246 (39%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           R+ GR    +R I++   V     GS L   G+T  L  AT     +E++   ++     
Sbjct: 313 RIDGRDSKTVRPITIEAGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALQGESRD 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG      +   R+ G      R+  RA+ +V+   +     + +  +
Sbjct: 373 RFMLHYNFPPFSTGETGMVGSPKRREIGHG----RLAKRAIAAVLPTDSEFPYSLRVVSE 428

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           V++++G +  A + GA +AL D                 LK  VA ++ G++        
Sbjct: 429 VLESNGSSSMATVCGASLALMDAGV-------------PLKAPVAGVAMGLIKEGARFAV 475

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G +  +Q   +    +++     L  A      ++ L
Sbjct: 476 LTDILGDEDHLGDMDFKVAGTEQG-VTALQMDIKIDGITREIMAQALQQALAGRLHILGL 534

Query: 234 QKDVIS 239
              V+S
Sbjct: 535 MNGVLS 540



 Score = 88.6 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 78/235 (33%), Gaps = 31/235 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + L      + A+G+ LV  GDT +L TA    ++           +T  Y     + 
Sbjct: 13  RRLQLETGRMARQADGAVLVSSGDTVVLVTAVGRREMKP---GQDFFPLTVNYQEKAYAA 69

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G       KRE   GR   +     R+I R +R +     +   Q+I     +  D    
Sbjct: 70  GKIPGGFFKRE---GRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVVSVDRDNDPD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                     G + A     + G  +++  Y + +T  
Sbjct: 127 ILALVGASAALAVSGI-------------PFNGPIGAARVAYIDGKYVLNPSYAQLTTSQ 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
           +D     T    ++     +E    S++     +     +    I  +  L ++ 
Sbjct: 174 LDLVVAGTRQAVLMV---ESEAQQLSEEIMLEAVMFGHAQFQPVIETIEALAREA 225


>gi|110597075|ref|ZP_01385364.1| Polyribonucleotide nucleotidyltransferase [Chlorobium ferrooxidans
           DSM 13031]
 gi|110341266|gb|EAT59731.1| Polyribonucleotide nucleotidyltransferase [Chlorobium ferrooxidans
           DSM 13031]
          Length = 731

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 87/241 (36%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           RL GR   ++R IS+   +   A GS L   G+T  L T TL  K        + N+   
Sbjct: 332 RLDGRTLEEVRPISIELGIIPRAHGSALFTRGETQALVTITLGTKKDAQSVDNLTNSADK 391

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RA++ V          I I  D
Sbjct: 392 KFMLHYNFPPFSVGETGRIGSTGRREIGHG----NLAERAIKMVAPTEQEFPYTIRIVSD 447

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +++++G +  A++ G  +AL D    +    +   +  + +G   A+         + D+
Sbjct: 448 ILESNGSSSMASVCGGTLALMDGGVPIRKPVSGIAMGLIKEGSAYAV---------LSDI 498

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I   Q   +            L  A+     ++    + 
Sbjct: 499 LGNEDHLGDMDFKVTGTRDG-ITACQMDIKIDGLDYHVLETALEQARKGRLHILDKMDEA 557

Query: 238 I 238
           I
Sbjct: 558 I 558



 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 80/231 (34%), Gaps = 32/231 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTA-----TLEEKVPMWIRNTKHGWITAEYGMLP 67
           +S+      K A+G+ +V+ GDT +L T      T       +    ++    +  G  P
Sbjct: 15  LSIETGKMAKQADGATVVRLGDTMVLATVVSSKKTPPPNQDYFPLQVEYREKYSAAGKFP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ--ADGGT 125
              G   KRE    R   +     R+I RALR +     L   QIII         DG  
Sbjct: 75  ---GGFFKRET---RPSEKEVLSARLIDRALRPLFPDGYLYETQIIITVISSDQINDGD- 127

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
               + G   A           +         +  ++ +  G + G  I++ D  E +  
Sbjct: 128 ----VLGGIAA----------SAAIMVSDIPFRNAMSEVRVGRINGKFIINPDVNELAES 173

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D+D     T    I  ++G  E    S+      +    D I  L  LQ +
Sbjct: 174 DLDICIGGTKD-TICMLEG--EMQEISEAEMLDAIKFGHDAIKRLCTLQDE 221


>gi|225871841|ref|YP_002753295.1| polyribonucleotide nucleotidyltransferase [Acidobacterium
           capsulatum ATCC 51196]
 gi|254782698|sp|C1F8M1|PNP_ACIC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225791918|gb|ACO32008.1| polyribonucleotide nucleotidyltransferase [Acidobacterium
           capsulatum ATCC 51196]
          Length = 806

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 92/243 (37%), Gaps = 18/243 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKH 56
           +R   R  +++R+I++   V     GS L   G+T  L TATL               + 
Sbjct: 316 VRPDRRGFDEIRQITIEVGVLPRTHGSALFTRGETQALVTATLGTNDDSQRLETFEGEQK 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +   V  R+ G       +  RA+ +V+         + +  
Sbjct: 376 KRFMLHYNFPPFSVGEVGRMTGVGRREVGHG----ALAERAISAVLPGEDESPYALRVVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           D+++++G +  A++ GA +AL D    ++       +  V +G   AI         + D
Sbjct: 432 DILESNGSSSMASVCGASLALMDAGIPLKGAVAGVAMGLVKEGDEYAI---------LTD 482

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I  +Q   + +  +       +  A+     L+    +
Sbjct: 483 IAGAEDHYGDMDFKVAGTRKG-ITALQMDIKISGITGQIMREAMEQARRGRMFLLDKMDE 541

Query: 237 VIS 239
           +++
Sbjct: 542 ILA 544



 Score = 82.1 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 76/230 (33%), Gaps = 29/230 (12%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
           ++        K A G+ LV  G++ +L TA      +E +  +     +       G +P
Sbjct: 14  KLHFETGRMAKQASGAALVTQGESVVLATAVAAPDPKEGIDFFPLTVDYREYAYAGGRIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   R     R I R +R +         Q+I        +     
Sbjct: 74  ---GGFIKRE---GRPSEREILTSRQIDRPIRPLFPEGFRNETQVIALVFSADKENDPDI 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
             I                 +          G V A+  G + G  +++  Y E     +
Sbjct: 128 VGIN-------------AASAALALSDIPFAGPVGAVRVGYVNGEYVINPSYAERRDSSI 174

Query: 188 DANFVMTDSGHIVEVQ-GSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   V T  G IV ++ GSAE     ++     ++     I  ++    +
Sbjct: 175 NITVVGTMDG-IVMIESGSAE---VPEEVVLGAIDFGHTEIKKIVAAINE 220


>gi|320450042|ref|YP_004202138.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus
           SA-01]
 gi|320150211|gb|ADW21589.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus
           SA-01]
          Length = 714

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 94/245 (38%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           R  GR    +R I +   V     GS +   G+T +L T TL       I +     +  
Sbjct: 328 RADGRTPKDLRPIWIEVDVLPRTHGSAVFTRGETQVLGTVTLGTGRDEQIIDDLGIDETE 387

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +   VS R+ G       +  RAL++V+         I +  D
Sbjct: 388 KFLVHYNFPPFSTGEVKRLRGVSRREIGHG----NLAKRALKAVLPPEEAFPYTIRVVGD 443

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           V++++G +  A +    +AL D                 LK  VA ++ G++  G     
Sbjct: 444 VLESNGSSSMATVCAGCLALMDAGV-------------PLKAPVAGVAMGLVWEGERAVI 490

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED+  D+D     T  G +  +Q   +     ++     L  A++    ++ L
Sbjct: 491 LTDILGLEDALGDMDFKVAGTRKG-VTALQMDNKVGGLPREVLKEALMQAREARMKILDL 549

Query: 234 QKDVI 238
            + V+
Sbjct: 550 MESVL 554



 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 90/232 (38%), Gaps = 32/232 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + L     +K A GS LV++GDT +L TA   E+            +T E+     + 
Sbjct: 21  RPLVLEAGKYAKQASGSVLVRYGDTVVLATAQASEE----PIEADFLPLTVEFEERHYAV 76

Query: 71  ----GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
               G+ ++RE   GR G ++    RM  R +R +         Q+I+   V+ AD    
Sbjct: 77  GKIPGSFMRRE---GRPGEKAILSARMTDRPIRPLFPKGFRHEVQVIVT--VLSADQKNP 131

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
                 T A  AL                    +G VAA+  G++ G  +++    E S 
Sbjct: 132 PDILGPTAASAAL-------------MLSDIPWEGPVAAVRVGLIGGQFVLNPTLQELSE 178

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             +D   V      I+ V+  A+     ++     L  A   +  ++ LQ++
Sbjct: 179 SALDL-VVAGSRDAILMVEAGAQE--VDEEMLVQALEFAHREMQPILDLQEE 227


>gi|288818483|ref|YP_003432831.1| polyribonucleotide nucleotidyltransferase [Hydrogenobacter
           thermophilus TK-6]
 gi|288787883|dbj|BAI69630.1| polyribonucleotide nucleotidyltransferase [Hydrogenobacter
           thermophilus TK-6]
 gi|308752073|gb|ADO45556.1| polyribonucleotide nucleotidyltransferase [Hydrogenobacter
           thermophilus TK-6]
          Length = 705

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 90/250 (36%), Gaps = 27/250 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH---- 56
           +R+ GR+  ++R IS+  +  +   GS +   G T    T TL       +  + +    
Sbjct: 311 VRIDGRKPEEIRPISIEIKPFERPHGSAIFTRGQTQAFATVTLGSPHEAQLVESIYEGEV 370

Query: 57  -GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P STG          R+ G       +  RA+  ++         I I 
Sbjct: 371 FKRFMLHYNFPPFSTGEAKPWGPPRRREIGHG----ALAERAIEPLIPPEEEFPYIIRIV 426

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY-- 172
            ++++++G T  A +    +AL D                 +K HVA I+ G++  G   
Sbjct: 427 SNILESNGSTSMATVCAGSLALFDAGV-------------PIKKHVAGIAMGLIMEGERY 473

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I  VQ   +     ++     L  AK     ++
Sbjct: 474 VILSDILGDEDQLGDMDFKVAGTKDG-ITSVQMDIKIKGLKKEIMIESLMQAKRGRLYIL 532

Query: 232 KLQKDVISNE 241
           +   + I   
Sbjct: 533 EKMYEAIPEP 542



 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 96/237 (40%), Gaps = 32/237 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLP 67
            I +     +K ++G+ +V+ GDT +L TA + E+    +     +  +   ++ +G +P
Sbjct: 14  PIIIETGHYAKLSDGAVVVRQGDTAVLVTAVVSEEPLQDIDFMPLSVDYREQSSAWGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
              G  VKRE   G+   R   + R+I R +R +          ++I    + AD     
Sbjct: 74  ---GGFVKRE---GKPTDREVLVSRVIDRPIRPLFPEGFFHD--VVITALTLSADDKYDP 125

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AITGA  ALH                   +G +A +    + G  + +  Y E    
Sbjct: 126 DVLAITGASAALH-------------ISRIPFEGPIAGLRVCRIEGKFVANPTYEERQKA 172

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           D++   +      I+ V+G A+     ++ F   L    +   +LI  Q++ +  +V
Sbjct: 173 DLEI-ILAVSKDSIIMVEGGAKE--VDEEVFANALYFGLEAGKELISAQEE-LREKV 225


>gi|103486036|ref|YP_615597.1| polynucleotide phosphorylase/polyadenylase [Sphingopyxis alaskensis
           RB2256]
 gi|123380103|sp|Q1GVQ8|PNP_SPHAL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|98976113|gb|ABF52264.1| 3' exoribonuclease [Sphingopyxis alaskensis RB2256]
          Length = 771

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 95/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR   Q+R I         A GS L   G+T  + T TL  K    + +  +G    
Sbjct: 316 RIDGRTTTQIRPIVAETHFLPRAHGSALFTRGETQTIATCTLGTKDAEQMIDGLNGLSYQ 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G      ++  RAL  V+         I +  D
Sbjct: 376 HFMLHYNFPPYSVGEVGRFGAPGRREVGHG----KLAWRALHPVLPSKDEFPYTIRLTSD 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +A+ D    ++   +   +  +L+G   AI         + D+
Sbjct: 432 ITESNGSSSMASVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDYAI---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   + A  +++ F A L  AK+  A ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTSEG-ITTMQMDIKIAGITREIFEAALAQAKEGRAHILGEMNKA 541

Query: 238 ISN 240
           +  
Sbjct: 542 LGE 544



 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 78/225 (34%), Gaps = 27/225 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           ++L    V++ A+G+ +   G+T +L   T  + V           +T  Y     S   
Sbjct: 16  LTLETGKVARQADGAVIATLGETVVLCAVTAAKSV---KDGQDFFPLTVHYQ-EKYSAAG 71

Query: 73  RVKREAVSGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTA 128
           R+        +G   +E  + R+I R +R +          I     V+  DG       
Sbjct: 72  RIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNE--INAIAQVLSYDGHNEPDIL 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+  A  AL                     G + A   G L G  I++    ++   + D
Sbjct: 130 AMVAASAAL-------------TISGVPFMGPIGAARVGYLNGEYILNPT--DEQVAEGD 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
            + V+  +   V +  S E    S++     +  A D   +++K 
Sbjct: 175 LDLVVAATHDAVMMVES-EANELSEEVMLGAVLFAHDACKEVVKA 218


>gi|255567379|ref|XP_002524669.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
           communis]
 gi|223536030|gb|EEF37688.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
           communis]
          Length = 958

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 89/241 (36%), Gaps = 13/241 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
            R+ GR+ +++R +           GS L   GDT +L T TL           +     
Sbjct: 365 FRVDGRRLDEVRPLFCKAGPLPILHGSSLFNRGDTQVLCTVTLGAPGDAQRLESLVGPPT 424

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S     KR  ++ R+ G       +  +AL +V+         + I+ 
Sbjct: 425 KRFMLHYSFPPFSINEVGKRVGLNRREVGHGT----LAEKALLAVLPPEDDFPYTVRINS 480

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175
           +V+ +DG T  A + G  +AL D    + +      +  V +      S G +  Y ++ 
Sbjct: 481 EVMASDGSTSMATVCGGSMALMDAGIPLREHVAGVSVGLVSEVDP---STGEIKDYRVLT 537

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T +G +  +Q   + A    D     L+ A      ++   +
Sbjct: 538 DILGLEDHLGDMDFKIAGTRNG-VTAIQLDIKPAGIPLDIICECLDHALKGRLQILDHME 596

Query: 236 D 236
            
Sbjct: 597 Q 597



 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 75/219 (34%), Gaps = 34/219 (15%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ISL    ++++A G+ ++    T +L+T T                +T +Y     + G 
Sbjct: 66  ISLETGEIARFANGAVVLSMDQTKVLSTVT----SSKGDAVRDFLPLTVDYQEKQFAQGV 121

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126
                ++RE   G    R     R+I R +R +         Q++    V+ +DG     
Sbjct: 122 IPNTFMRRE---GAPKERELLCGRLIDRPIRPLFAPGFYHEVQVMAS--VLSSDGKQDPD 176

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A      AL                     G +  I  G + G  IV+    E S  D
Sbjct: 177 VMAANATSAAL-------------MLSDIPWGGPIGVIRIGRIGGQFIVNPTMDELSLSD 223

Query: 187 VDANFVMTDSGHI-VEVQGSAERATFSQDHFFAMLNLAK 224
           ++  +  T    + ++VQ        S+    A L LA 
Sbjct: 224 LNLVYACTKDKTLMIDVQA----REISEKDLEAALRLAH 258


>gi|82703668|ref|YP_413234.1| polynucleotide phosphorylase/polyadenylase [Nitrosospira
           multiformis ATCC 25196]
 gi|123740603|sp|Q2Y5X9|PNP_NITMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|82411733|gb|ABB75842.1| 3' exoribonuclease [Nitrosospira multiformis ATCC 25196]
          Length = 701

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 98/245 (40%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I++   +     GS L   G+T  L  ATL         +   G    
Sbjct: 314 RIDGRDTRTVRPITIRTGLLPRTHGSALFTRGETQALVVATLGTGRDEQKIDALQGDYSE 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +      R+ G      R+  RAL +V+         + +  +
Sbjct: 374 RFMLHYNMPPYATGETGRVGTPKRREIGHG----RLAKRALVAVLPSPEEFGYSLRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 LKGHVA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGGCLALMDAGV-------------PLKGHVAGIAMGLIKEGNRFAV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G I  +Q   +    +++   A L  A++    ++ +
Sbjct: 477 LTDILGDEDHLGDMDFKVAGTENG-ITALQMDIKIQGITKEILHAALVQAREGRMHILAI 535

Query: 234 QKDVI 238
            + V+
Sbjct: 536 MRQVL 540



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 78/231 (33%), Gaps = 36/231 (15%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           +++     +++ A  + +V  GDT +L T           +      +T +Y     + G
Sbjct: 13  QLTFETGEIARQAHAAIMVSMGDTVVLVTVVG---AKSAKQGQDFFPLTVDYQERSYAAG 69

Query: 72  ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
               +  KRE   GR   +     R+I R +R +   +     Q++        +     
Sbjct: 70  RIPGSFFKRE---GRPSEKEILTSRLIDRPIRPLFPENFYNEVQVVATVLSSDNEVDADI 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G + A   G + G  +++ D    +    
Sbjct: 127 PAMLGASAALVLSGI-------------PFNGPIGAARIGYINGEYVLNPDTS--ALKQT 171

Query: 188 DANFVMTDSGH-IVEVQGSAERATFSQDHFFAM-------LNLAKDRIADL 230
             N V+  +   ++ V+  A     S+D            + +A D I +L
Sbjct: 172 QLNLVVAGTRQAVLMVESDAME--LSEDVMLGAIVYGHQQMQVAIDAINEL 220


>gi|270697519|ref|ZP_06222988.1| tRNA nucleotidyltransferase [Haemophilus influenzae HK1212]
 gi|270315955|gb|EFA28017.1| tRNA nucleotidyltransferase [Haemophilus influenzae HK1212]
          Length = 93

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 52/92 (56%)

Query: 148 SNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207
            N    +  +KG V+AIS G++ G  + DL+Y EDS  + D N VM + G ++EVQG+AE
Sbjct: 1   ENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYVEDSAAETDMNVVMMEDGRMIEVQGTAE 60

Query: 208 RATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
              FS +    +L+LAK     +   Q++ + 
Sbjct: 61  GEPFSHEELLTLLDLAKQGCNQIFIAQREALG 92


>gi|258516323|ref|YP_003192545.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780028|gb|ACV63922.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 746

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 98/247 (39%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR  +++R IS+   V     GS L   G T +L+  TL    EE++   +   + 
Sbjct: 322 IRMDGRALDEVRPISVEAGVLPRTHGSGLFTRGQTQILSVVTLGAISEEQILDGLGTEES 381

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG      +   R+ G       + GRAL  ++         I +  
Sbjct: 382 KRYMHHYNFPPFSTGETKMMRSPGRREIGHG----ALAGRALEPMIPGEEEFPYTIRVVS 437

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           + ++++G T   ++ G+ +AL D                 +K  V+ ++ G++       
Sbjct: 438 EALESNGSTSMGSVCGSTLALMDAGV-------------PIKAPVSGVAMGLIKEDDEIV 484

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G I  +Q   + A  +Q+     L  A      ++ 
Sbjct: 485 VLTDIQGLEDALGDMDFKVAGTAKG-INALQMDIKVAGVTQEILEKALQQAYTGRMHIMG 543

Query: 233 LQKDVIS 239
              +VIS
Sbjct: 544 KMMEVIS 550



 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 92/240 (38%), Gaps = 31/240 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+K A G+ LV +GDT +L+TAT    L E +  +    ++       G +
Sbjct: 13  RVLTIETGRVAKQAGGAVLVAYGDTVVLSTATMSRTLREGIDFFPLTVEYEERLYAVGRI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KREA   R    +    R+I R++R +         QII     +  D    
Sbjct: 73  P---GGFIKREA---RPSENAILSCRLIDRSIRPLFPKGFRNETQIINTIMSVDQDHAPE 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ G   AL                     G +  +  G + G  I++ +     +  
Sbjct: 127 MAAMIGTSAAL-------------TISDAPFNGPIGGVIVGRVDGELIINPNAA--QSAK 171

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI----KLQKDVISNEV 242
            D + V+  +   V +  +      +++     +    D I  ++    + +++ I  ++
Sbjct: 172 SDLHLVVAGTKDAVMMVEAGANEV-TEEVMLDAIAYGHDVIRQIVDFIDEFRQEAIEQQL 230


>gi|323701874|ref|ZP_08113544.1| polyribonucleotide nucleotidyltransferase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533178|gb|EGB23047.1| polyribonucleotide nucleotidyltransferase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 738

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 98/246 (39%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR  +++R IS+   V     GS L   G T +LT ATL    +E++   +   + 
Sbjct: 324 LRIDGRAIDEVRPISVEVGVLARTHGSGLFTRGQTQILTVATLGCVSDEQILDGLGLEET 383

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG      +   R+ G       +  RAL  ++    +    + +  
Sbjct: 384 KRYMHHYNFPPFSTGETKPMRSPGRREIGHG----ALAERALEPMIPPEEVFPYTLRVVS 439

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + ++++G T   ++ G+ +AL D                 +K  VA ++ G++       
Sbjct: 440 EALESNGSTSMGSVCGSTLALMDAGV-------------PIKAPVAGVAMGLIMEEDQFT 486

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I  +Q   +    +++ F   L  A      ++ 
Sbjct: 487 VLTDIQGLEDHLGDMDFKVAGTANG-ITALQMDIKIPGITREVFEQALAQAYRGRMHILS 545

Query: 233 LQKDVI 238
              +VI
Sbjct: 546 KMLEVI 551



 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 26/225 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R+++L    ++K A G+ LV +GDT +L TAT+      +  +     +       G +P
Sbjct: 16  RKLTLETGRLAKQASGAVLVTYGDTMVLVTATVAKNTRDIDFFPLTVDYEERLYAVGKIP 75

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D     
Sbjct: 76  ---GGFIKRE---GRPSEKAILSGRLIDRPIRPLFPKHMRNEVQVVATVLSVDQDNAPEI 129

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ GA  ALH                  LK  +  +  G + G  +++    +    D+
Sbjct: 130 AAMIGASAALH-------------ISKIPLKKPIGGVIVGRVDGQFVINPVVRQAENSDM 176

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
                 TD   ++ V+  A+     +D     +    + + +++K
Sbjct: 177 HLVVAGTDDA-VMMVEAGAKEVP--EDQILEAIMFGHEVVKEVVK 218


>gi|169831097|ref|YP_001717079.1| 3' exoribonuclease [Candidatus Desulforudis audaxviator MP104C]
 gi|257096687|sp|B1I393|PNP_DESAP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169637941|gb|ACA59447.1| 3' exoribonuclease [Candidatus Desulforudis audaxviator MP104C]
          Length = 741

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 101/242 (41%), Gaps = 18/242 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +RL GR  +++R+IS+   V     GS L + G T +L+     A  +E++   +   + 
Sbjct: 324 VRLDGRAFDEIRDISVEVNVLPRTHGSGLFQRGQTQVLSVLTLGAVRDEQILDGLDTQET 383

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     STG      +   R+ G       + GRAL +V+    +    I I  
Sbjct: 384 KRFMHHYNFPSFSTGEARPIRSAGRREIGHG----ALAGRALEAVLPGEDVFPYTIRIVS 439

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ ++G T  A++ G+ +AL D    ++       +  + +G   A+         + D
Sbjct: 440 EVLSSNGSTSMASVCGSCLALMDAGVPIKAPVAGIAMGLIKEGDEVAV---------LTD 490

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T+ G +  +Q   + A  + +     +  A++    ++   K+
Sbjct: 491 IQGTEDHLGDMDFKVAGTEQG-VTALQMDIKIAGITPEILAQAMAQAREARLYILDRYKE 549

Query: 237 VI 238
           VI
Sbjct: 550 VI 551



 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 84/225 (37%), Gaps = 26/225 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           R  S+    V+  A    L ++G+T +L  AT   L E +  +     +       G +P
Sbjct: 16  RTFSVDIGRVAGQASAGVLARYGETVVLVAATREALREGLDFFPLTVDYEERHYAVGRIP 75

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G+ +KRE   GR G ++    R+I R++R +   +      ++     +  D     
Sbjct: 76  ---GSFMKRE---GRPGEKAILAARLIDRSIRPLFPRNFTQDVHVVALVMSVDQDCSPAI 129

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AI GA VAL                     G V A+  GM+ G  +V+    +D   D+
Sbjct: 130 TAILGASVAL-------------TLSDIPFAGPVGAVIMGMVDGQLVVNPTLEQDEKSDL 176

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
                 T    I  V+  A+    S++     L  A   I  + +
Sbjct: 177 HLTVAGTREA-INMVEAGAKE--VSEEIIVEALTKAHAEIQRIAE 218


>gi|213513832|ref|NP_001134673.1| Exosome complex exonuclease MTR3 [Salmo salar]
 gi|209735138|gb|ACI68438.1| Exosome complex exonuclease MTR3 [Salmo salar]
          Length = 277

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 90/254 (35%), Gaps = 34/254 (13%)

Query: 2   RLSGRQENQM--REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGW 58
           R+ GRQ  Q+  R + +   +   A+GS  ++ G+T L+       +       + K G 
Sbjct: 36  RVDGRQRGQVDVRSVFVRCGLISQAKGSAYIEAGNTKLICCVYGPRETERKDETDMKSGR 95

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  +    P S      RE  S  QG   +++  M+  +LR  V L      QI ++  V
Sbjct: 96  LITDMRFAPFSC-----RERGSWIQGSDEKDLSLMLLESLRPGVCLQKYPRSQIEVNVMV 150

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ++ DG     A+T A +AL D    M D              V   S        ++D  
Sbjct: 151 LENDGAVLAHAVTCASMALADAGIEMYDL-------------VLGCSIRQEGATYLIDPT 197

Query: 179 YGEDSTIDVD----------ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
           + E++  ++               +     I  +Q   E     +D     +    +   
Sbjct: 198 FLEENGCNLASGSRENLGSLTVAFLPSLNQISGLQSDGEMG---EDTLTGGVRTCIEGCF 254

Query: 229 DLIKLQKDVISNEV 242
            L  + +  +S  V
Sbjct: 255 KLYPVIQQALSKAV 268


>gi|255022817|ref|ZP_05294803.1| ribonuclease PH [Listeria monocytogenes FSL J1-208]
          Length = 119

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 41/114 (35%), Positives = 70/114 (61%), Gaps = 3/114 (2%)

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDSTIDVD 188
           +TGA++A+   +  +++     +    +K  +AA S G+L  G  ++DL+Y EDS   VD
Sbjct: 1   MTGAFIAMVMAIAKLDEAVPFAKF--PVKDFLAATSVGVLEEGGTVLDLNYVEDSAAQVD 58

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            N +MT SG  VE+QG+ E ATFS+     ++ L K  I++LI++QK+ + ++V
Sbjct: 59  MNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLGDKV 112


>gi|57238127|ref|YP_179377.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           RM1221]
 gi|81353435|sp|Q5HTK8|PNP_CAMJR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|57166931|gb|AAW35710.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           RM1221]
 gi|315058687|gb|ADT73016.1| Polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 719

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 88/242 (36%), Gaps = 22/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
           R  GR  N++R IS+   +   A GSCL   G T  L  ATL  +    +      +N  
Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G     +A   R+ G       +  RAL   VD +      I + 
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSVDEN--YPYVIRLV 449

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A + G  +AL               +  + + +  A+         + 
Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAV---------LT 500

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     +  G +  +Q   +     Q+     L  AK+    ++ + +
Sbjct: 501 DIMGLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 559

Query: 236 DV 237
           + 
Sbjct: 560 EA 561



 Score = 86.7 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 86/242 (35%), Gaps = 60/242 (24%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72
           V+K A G+ L++ G + +L T   EEK            +T +Y       G +P   G 
Sbjct: 19  VAKQAAGAVLMRQGKSVVLATVAREEKQ----VEEDFLPLTVQYIEKAYAAGKIP---GG 71

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            VKRE    +         R+I R+LR +         QI++   V+ AD     +  ++
Sbjct: 72  YVKRET---KPSDAETLTARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPKVDLQVMSL 126

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
             A VAL+     M             K  V  +  G + G  I++ +  E     +D  
Sbjct: 127 NAASVALYLSDIPM-------------KAPVCGVRIGKIDGNFILNPNNEELQNSTLDL- 172

Query: 191 FVMTDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKD 225
           +V      ++ ++  A     E   F                    S+D     LNLA+ 
Sbjct: 173 YVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQK 232

Query: 226 RI 227
            I
Sbjct: 233 AI 234


>gi|194333349|ref|YP_002015209.1| polynucleotide phosphorylase/polyadenylase [Prosthecochloris
           aestuarii DSM 271]
 gi|257096703|sp|B4S5G5|PNP_PROA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|194311167|gb|ACF45562.1| Polyribonucleotide nucleotidyltransferase [Prosthecochloris
           aestuarii DSM 271]
          Length = 734

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 88/244 (36%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR+ +++R IS+   +   A GS L   G+T  L T TL  K    + +T       
Sbjct: 334 RLDGRRLDEVRPISIELGLIPRAHGSALFTRGETQALVTLTLGTKKDAQMIDTLTDDADK 393

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +    S R+ G       +  RA+R V    +     I I  D
Sbjct: 394 RFMLHYNFPPFSVGETGRVGGTSRREIGHG----NLAERAIRKVAPAESAFPYTIRIVSD 449

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +++++G +  A++ G  +A  D    +    +   +  + +G   A+         + D+
Sbjct: 450 ILESNGSSSMASVCGGALAAMDGGVPLRKPVSGIAMGLIKEGDRYAV---------LSDI 500

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I   Q   +            L  A      ++    + 
Sbjct: 501 LGNEDHLGDMDFKVAGTADG-ITACQMDIKIDGLDYHILEQALEQALHGRLHILDKMNEA 559

Query: 238 ISNE 241
           I   
Sbjct: 560 IQEP 563



 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 82/226 (36%), Gaps = 22/226 (9%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTA--TLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +S+      K A+GS +V+  DT +L T   +     P             +Y    +  
Sbjct: 17  LSIETGKMAKQADGSAIVRLNDTMVLATVVSSKTPPSPNQSFFPLQVEYREKYSAAGKFP 76

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR   +     R+I RALR +         QIII   VI +D     A +
Sbjct: 77  GGFFKRE---GRPSEKEILSARLIDRALRPLFPDGYYQDTQIIIS--VISSD-QINDADV 130

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            G   A           +         +  ++ +  G + G  IV+ +  E    D+D +
Sbjct: 131 LGGVAA----------SAAIMVSDIPFQNSMSEVRVGRVNGEYIVNPNINELRDSDIDIS 180

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              T++  I  ++G  E    S+      +    + I  +  LQ +
Sbjct: 181 IGGTEN-TICMLEG--EMDEISEAEMLEAIRFGHEAIKKICALQNE 223


>gi|301063439|ref|ZP_07203971.1| polyribonucleotide nucleotidyltransferase [delta proteobacterium
           NaphS2]
 gi|300442378|gb|EFK06611.1| polyribonucleotide nucleotidyltransferase [delta proteobacterium
           NaphS2]
          Length = 697

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57
           R+ GR  N++R I     +     GS L   G+T  +   TL  +            +  
Sbjct: 312 RIDGRAFNEVRPIECLVGLLPRIHGSALFTRGETQAMVLTTLGTERDRQRIESIFGEELR 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   KR +  GR   R      +  RAL  V+         I +  +
Sbjct: 372 SFILHYNFPPYSVGE-AKRLSGPGR---REIGHGALARRALLPVLPSEEDFQYCIRVVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           +++++G +  A++ G  ++L D                 +K  VA ++ G++       +
Sbjct: 428 ILESNGSSSMASVCGGCLSLMDAGV-------------PIKDLVAGVAMGLVAEGDNVVV 474

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     L  AK+    ++  
Sbjct: 475 LTDILGDEDHYGDMDFKVTGTSEG-ITALQMDIKIERLTREIMEQALEQAKEGRLHILGC 533

Query: 234 QKDVISNE 241
            K+ I+  
Sbjct: 534 MKETIAQP 541



 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 87/237 (36%), Gaps = 29/237 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R I +    ++K A GS +V  G+T +L TA   + V           +T EY  +  + 
Sbjct: 11  RNIHVETGRIAKQANGSVVVTSGETVVLVTAVATDDV---REGIDFLPLTVEYQEMSYAG 67

Query: 71  GN----RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G       +R+   GR G +   I R+I R LR +   +     Q+I        +    
Sbjct: 68  GQIPGNFFRRDM--GRPGEKETLISRLIDRPLRPLFPDNYHYETQVIATVLSTDKENEAD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                    +G +A +  G + G  + +    +    +
Sbjct: 126 MLAMLGASAAL-------------EISDIPFQGPIAGVKVGRIDGEFVANPTISQQE--E 170

Query: 187 VDAN-FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            D N  V  +   IV V+G +     S+      +      I  ++ +Q + +  EV
Sbjct: 171 SDINLIVAGNRDGIVMVEGGSR--FVSESDMIDAIFYGHQAIQPMLDVQ-ESLKKEV 224


>gi|291613953|ref|YP_003524110.1| polyribonucleotide nucleotidyltransferase [Sideroxydans
           lithotrophicus ES-1]
 gi|291584065|gb|ADE11723.1| polyribonucleotide nucleotidyltransferase [Sideroxydans
           lithotrophicus ES-1]
          Length = 709

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 95/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I++   V     GS L   G+T  L  ATL           ++     
Sbjct: 320 RIDGRDTRTVRPITIRTGVLPRTHGSVLFTRGETQALVVATLGSMRDSQTIDALQGEYSD 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +      R+ G      R+  RAL +V+         I +  +
Sbjct: 380 RFMLHYNFPPYSTGETGRVGTPKRREIGHG----RLAKRALVAVLPSEEECGYAIRVVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  ++L D                 +K HVA I+ G++        
Sbjct: 436 ITESNGSSSMASVCGGCLSLMDAGV-------------PVKTHVAGIAMGLIKDGGRFAV 482

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +D G I  +Q   +    +++     L+ AK+    ++ +
Sbjct: 483 LTDILGDEDHLGDMDFKVAGSDKG-ITALQMDIKINGITKEIMQVALSQAKEGRLHILGI 541

Query: 234 QKDVISN 240
            K  + +
Sbjct: 542 MKQAMPS 548



 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 50/159 (31%), Gaps = 24/159 (15%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR   +     R+I R LR +   S     QI+           +   A+
Sbjct: 79  GGFFKRE---GRPSEKEILTSRLIDRPLRPLFPESFYNEVQIVATVMSSDPQIDSDIPAM 135

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  AL                     G + A   G L G  +++    E     +D  
Sbjct: 136 IGASAALAISGI-------------PFDGPIGAARVGYLNGQYVLNPTKDELVESKMDLV 182

Query: 191 FVMTDSGHIV---EVQGSAER-----ATFSQDHFFAMLN 221
              T    ++   E Q  +E        F  +   A++N
Sbjct: 183 VAGTAKAVLMVESEAQELSEDVMLGAVVFGHEQMQAVIN 221


>gi|225849804|ref|YP_002730038.1| polynucleotide phosphorylase/polyadenylase [Persephonella marina
           EX-H1]
 gi|257096700|sp|C0QTM3|PNP_PERMH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225646061|gb|ACO04247.1| polyribonucleotide nucleotidyltransferase [Persephonella marina
           EX-H1]
          Length = 709

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 89/250 (35%), Gaps = 27/250 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTK 55
           +R+ GR+ +++R I +   +     GS +   G T      TL                +
Sbjct: 317 VRIDGRRPDEIRPIWIRTGLFPRIHGSAIFTRGQTQAFVATTLGAPGEEQIEESIEEGEE 376

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P STG      A S R+ G       +  RA+  ++         I + 
Sbjct: 377 KKRFMLHYNFPPFSTGEARPPRAPSRREIGHG----NLAERAIEPLIPDEEEFPYVIRVV 432

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            ++++++G T  A + GA ++L D    M             K HVA I+ G+L      
Sbjct: 433 SEILESNGSTSMATVCGASLSLFDAGVPM-------------KKHVAGIAMGLLKEDDDY 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++
Sbjct: 480 VILTDILGDEDHLGDMDFKVAGTRDG-VTSIQMDIKIKGLSKEILQEALEQAKKARMHIL 538

Query: 232 KLQKDVISNE 241
            L    +   
Sbjct: 539 DLMYKAMPQP 548



 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 89/237 (37%), Gaps = 32/237 (13%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLP 67
            IS+      K + G+ +V+ G+T +   A + E+    +        +   T  YG +P
Sbjct: 20  PISIETGYFAKQSNGAVIVRQGETAVFVAAVISEEAQADIDFLPLTVDYREKTYAYGKIP 79

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
              G  VKRE   G+   R   + R+I R +R +          +II    + AD     
Sbjct: 80  ---GGFVKRE---GKPTVREILVSRLIDRPIRPMFPKGFFND--VIITAMTLSADDKYDP 131

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI GA  ALH                   +G VA +    L G  IV+  Y + +  
Sbjct: 132 DVLAIVGASAALHIT-------------EAPFEGPVAGVRVCRLDGEFIVNPTYEQRNRS 178

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           D+D     T     + +          +    A+L  A + I  L  LQ++ + ++V
Sbjct: 179 DIDIVVAGTKDA--IVMVEGGSEEVSEEVILDAIL-FAHEEIKKLCDLQEE-LRSKV 231


>gi|300311084|ref|YP_003775176.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum
           seropedicae SmR1]
 gi|300073869|gb|ADJ63268.1| polyribonucleotide nucleotidyltransferase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 712

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 96/241 (39%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R IS+   V     GS L   G+T  L  ATL    +E+    +      
Sbjct: 320 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIATLGTARDEQKIDGLLGEYSD 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +      R+ G      R+  RAL + +  +   S  + +  +
Sbjct: 380 RFMLHYNMPPFATGETGRVGTPKRREIGHG----RLAKRALIAALPAADEFSYSVRLVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  + +G+  A+         + D+
Sbjct: 436 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIKEGNKFAV---------LTDI 486

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T +G I  +Q   +    +++     L  AK+    ++   ++ 
Sbjct: 487 LGDEDHLGDMDFKVAGTANG-ITALQMDIKIQGITKEIMQVALEQAKEGRHHILGKMQEA 545

Query: 238 I 238
           +
Sbjct: 546 V 546



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 27/233 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
           +++L    +++ A G+ +V   DT +L T    ++       +     +   T   G +P
Sbjct: 15  QVTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLTVDYIEKTYAAGRIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   G+   +     R+I R +R +     L   Q+II    +  +     
Sbjct: 75  ---GGFFKRE---GKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSVNPEIDPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A   G + G  +++    +  +  +
Sbjct: 129 PAMIGASAALSLAGI-------------PFNGPVGAARVGYIDGQYVLNPTTSQLKSSQL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     T++  ++     +E    S++     +    D+   +I+    ++ +
Sbjct: 176 DLVVAGTETAVLMV---ESEADQLSEEVMLGAVVFGHDQSKAVIEAIHALVRD 225


>gi|254247654|ref|ZP_04940975.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Burkholderia
           cenocepacia PC184]
 gi|124872430|gb|EAY64146.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Burkholderia
           cenocepacia PC184]
          Length = 730

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 337 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 396

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL   +  +      I +  +
Sbjct: 397 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVKCLPSADEFGYSIRVVSE 452

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 453 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 503

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G +  +Q   +    +++     L  AK+    ++      
Sbjct: 504 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRLHILGKMTSA 562

Query: 238 ISN 240
           +S 
Sbjct: 563 VSG 565



 Score = 68.6 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 74/232 (31%), Gaps = 34/232 (14%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    V++ A G+ +V   DT +L T       +     +     +   T   G + 
Sbjct: 32  KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSAGKIA 91

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE    R         R+I R LR +         Q++I    +  +     
Sbjct: 92  ---GGFFRREC---RPSEHETLTSRLIDRPLRPLFSEGFYNEVQVVIHVLSVNPEIPADI 145

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 146 PALIGASAALA-------------VSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSL 192

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232
           D     T+   ++     +E    S++            + +A D I +L++
Sbjct: 193 DLVVAGTERAVLMV---ESEADQLSEEVMLGAVVFGHEQMQIAIDAIHELVR 241


>gi|107023192|ref|YP_621519.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           cenocepacia AU 1054]
 gi|116690274|ref|YP_835897.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           cenocepacia HI2424]
 gi|123244852|sp|Q1BV09|PNP_BURCA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470943|sp|A0K927|PNP_BURCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|105893381|gb|ABF76546.1| 3' exoribonuclease [Burkholderia cenocepacia AU 1054]
 gi|116648363|gb|ABK09004.1| 3' exoribonuclease [Burkholderia cenocepacia HI2424]
          Length = 715

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL   +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVKCLPSADEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G +  +Q   +    +++     L  AK+    ++      
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRLHILGKMTSA 547

Query: 238 ISN 240
           +S 
Sbjct: 548 VSG 550



 Score = 75.1 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 76/232 (32%), Gaps = 34/232 (14%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    V++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 17  KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR         R+I R LR +         Q++I    +  +     
Sbjct: 77  ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSL 177

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232
           D     T+   ++     +E    S++            + +A D I +L++
Sbjct: 178 DLVVAGTERAVLMV---ESEADQLSEEVMLGAVVFGHEQMQIAIDAIHELVR 226


>gi|118399581|ref|XP_001032115.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
           thermophila]
 gi|89286453|gb|EAR84452.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
           thermophila SB210]
          Length = 240

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 87/236 (36%), Gaps = 22/236 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R  GR++N++R++       +  EGSC +  G T ++             R    G++ 
Sbjct: 11  FREDGRKKNELRKVDCILGFDQTVEGSCKLIQGLTEIVCLIKGPHN--KSTRRESEGFLN 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y + P S  +R K      +      E    +  +  SV+    LGS +I I   VIQ
Sbjct: 69  VQYNVAPFSGTDRRK----ISKFDKDWNEFTENLRVSFESVILTEQLGSGEIDIIVSVIQ 124

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG  +++      +AL D    M             K    + +   L    ++D  Y 
Sbjct: 125 ADGSAKSSIFNAISLALMDAGIPM-------------KDFTVSSTVISLNSEILLDATYQ 171

Query: 181 EDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           E      +     +  S  +  ++  + +   SQ     M  +A D    + ++ +
Sbjct: 172 EQKKASAELIISYLPRSDQVDFMEMKSSK--ISQQDTKEMCKIAVDGCKQMYQILR 225


>gi|170733613|ref|YP_001765560.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
           cenocepacia MC0-3]
 gi|226702627|sp|B1JVP5|PNP_BURCC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169816855|gb|ACA91438.1| Polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia
           MC0-3]
          Length = 715

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL  K    I +   G    
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL   +  +      I +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVKCLPSADEFGYSIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +L+G+  A+         + D+
Sbjct: 438 ITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G +  +Q   +    +++     L  AK+    ++      
Sbjct: 489 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITKEIMQVALAQAKEGRLHILGKMTSA 547

Query: 238 ISN 240
           +S 
Sbjct: 548 VSG 550



 Score = 74.7 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 76/232 (32%), Gaps = 34/232 (14%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L    V++ A G+ +V   DT +L T       +     +     +   T   G +P
Sbjct: 17  KVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR         R+I R LR +         Q++I    +  +     
Sbjct: 77  ---GGFFRRE---GRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A     +    +++    +     +
Sbjct: 131 PALIGASAALA-------------VSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSL 177

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232
           D     T+   ++     +E    S++            + +A D I +L++
Sbjct: 178 DLVVAGTERAVLMV---ESEADQLSEEVMLGAVVFGHEQMQIAIDAIHELVR 226


>gi|269837582|ref|YP_003319810.1| polyribonucleotide nucleotidyltransferase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786845|gb|ACZ38988.1| Polyribonucleotide nucleotidyltransferase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 790

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 96/250 (38%), Gaps = 28/250 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R  GR+ +++REI +   V   A GS +   G T  LT  TL    EE++   +   +  
Sbjct: 326 RPDGRRPDEIREIWIETGVLPRAHGSAIFTRGQTQALTVVTLGTTSEEQLLDGLGIEESK 385

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +    S R  G       +  R+L +V+    +    + +  +
Sbjct: 386 RYLHHYNFPPFSVGEVRRLRGPSRRDIGHG----ALAERSLLAVLPDEDVFPYTMRVVSE 441

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           ++ ++G T  A++ G+ +AL D                 ++  VA ++ G++        
Sbjct: 442 IVSSNGSTSMASVCGSSLALMDAGV-------------PIRAPVAGVAMGLITDPETGRY 488

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED+  D+D     T  G I  +Q   +    + +     L  A+     ++
Sbjct: 489 QILTDIQGIEDALGDMDFKVAGTAEG-ITGIQMDIKVMGITPEIMREALEQARRGRLYIL 547

Query: 232 KLQKDVISNE 241
                V++  
Sbjct: 548 DKMNAVLAQP 557



 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 84/230 (36%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
           R +++        A G+  V++GDT +LTT   E    E +  +     +       G +
Sbjct: 21  RRLTIETGRMAGLAHGAVTVRYGDTLVLTTVVGEREPREGLDFFPLTVDYEEKMYAAGKI 80

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR    +    R+  R +R +         Q+I        +    
Sbjct: 81  P---GGFIKRE---GRPTEAAILAARLTDRPIRPLFPKGYKAEVQVITTVLSADQENAPD 134

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             +I GA  AL                     G V A+  G + G  +V+    +     
Sbjct: 135 VLSIIGASAAL-------------MLSPIPWAGPVGAVRIGDIDGELVVNPTEHQLIDSK 181

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T    ++ V+G A+    S+D F   + LA D I  ++ +Q +
Sbjct: 182 LDMVVAGTADA-VMMVEGEADE--ISEDRFLEAVLLAHDEIKRIVAMQHE 228


>gi|312129691|ref|YP_003997031.1| polyribonucleotide nucleotidyltransferase [Leadbetterella
           byssophila DSM 17132]
 gi|311906237|gb|ADQ16678.1| polyribonucleotide nucleotidyltransferase [Leadbetterella
           byssophila DSM 17132]
          Length = 718

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 93/250 (37%), Gaps = 28/250 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           RL GR+  ++R I++       A GS L   G+T  L+T TL  K+   I +      + 
Sbjct: 317 RLDGRKLTEIRPITVEVDYLPSAHGSALFTRGETQSLSTTTLGTKLDEQIVDLPMVKGYS 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     STG       V  R+ G       +  R+L  V+         I +  D
Sbjct: 377 KFYLHYNFPGFSTGEVRPNRGVGRREIGHG----NLAQRSLERVMPPEEENPYTIRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    ++L D                 +K  V+ I+ G++        
Sbjct: 433 ILESNGSSSMATVCAGCLSLMDAGV-------------PIKAPVSGIAMGLITDPSTGKW 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G IV  Q   +    S D     LN A++    ++
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTAQG-IVACQMDIKIGGLSFDIIEKALNQAREGRLHIL 538

Query: 232 KLQKDVISNE 241
               +V+   
Sbjct: 539 GKMTEVLEKP 548



 Score = 76.7 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 81/228 (35%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           I+L      + A+G+ +++ G   +L T     T +E       +  +    A  G +P 
Sbjct: 17  ITLETGKLARQADGAVVLRSGKLMMLATVCAAKTHKEGTDFLPLSVDYQEKFASNGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   G+       I R+I RALR +         Q+++      AD   +  
Sbjct: 76  --GSFQRRE---GKLSDNEILISRLIDRALRPIFPEDFHAEVQVMVTLH--SADENIQ-- 126

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
                     D L  +   +          G ++ +    + G  +++         D+D
Sbjct: 127 ---------PDALAALAASAAIMASDIPFNGPISEVRVAKINGEYVINPPVQAIGNADLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T S  I+ V+G  E    S+      L  A + I   +  QK+
Sbjct: 178 LIVAGT-SDSIIMVEG--ESNEVSEIEMVEALRAAHEVIKLQVAAQKE 222


>gi|226227170|ref|YP_002761276.1| polyribonucleotide nucleotidyltransferase [Gemmatimonas aurantiaca
           T-27]
 gi|257096690|sp|C1A3Y1|PNP_GEMAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226090361|dbj|BAH38806.1| polyribonucleotide nucleotidyltransferase [Gemmatimonas aurantiaca
           T-27]
          Length = 732

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 95/245 (38%), Gaps = 20/245 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPMWIRNTKHGW 58
           +R+ GR+++++R IS+   V   A GS L   G T  L  ATL   +         + G 
Sbjct: 309 LRVDGRKKDEVRAISIDTSVLPRAHGSALFTRGQTQALVAATLGTAKDAQRLDSIKEPGE 368

Query: 59  IT----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +T      Y   P STG        S R+ G       +  RAL+ V+   A     I I
Sbjct: 369 VTRSFMLHYNFPPFSTGEVRPMRGTSRREIGHG----NLAERALQGVLPDFADFPYTIRI 424

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             DV++++G +  A++ G  ++L D    ++       +  + +G   AI         +
Sbjct: 425 VSDVLESNGSSSMASVCGGSLSLFDAGVPLKAAVAGVAMGLIKEGERYAI---------L 475

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED   D+D     T  G I  +Q   +            L+ AK     ++   
Sbjct: 476 TDILGTEDHLGDMDFKVAGTKDG-ITSIQMDIKIEGLDIKIMEEALSQAKAGRLHILGEM 534

Query: 235 KDVIS 239
              ++
Sbjct: 535 DKALA 539



 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 26/233 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLP 67
           R + +      K A GS +V+FG+T +L   T+ E    +P +    ++   T   G +P
Sbjct: 11  RPLVIETGRMAKQAAGSAVVQFGETMVLAAVTVSENQSPLPFFPLTVEYKEKTYAAGKIP 70

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR         R+I R++R +         Q+ I       +     
Sbjct: 71  ---GGFIKRE---GRPHDHEILAARIIDRSIRPLFPEGFKNEVQVFIYVISADQENDADV 124

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+  A  AL+                    G +A +  G + G+ +++  + +    D+
Sbjct: 125 LALVAASFALN-------------ASKIPFLGPIAGVRVGRVQGHWVLNPTFQQLGFSDL 171

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +   V      IV V+G +     S++     L L+ D I +LI +Q+++++ 
Sbjct: 172 EL-VVAGSKDSIVMVEGGSLE--VSEEDVLESLRLSHDGIRELIGMQEELLAK 221


>gi|15834850|ref|NP_296609.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum
           Nigg]
 gi|270285016|ref|ZP_06194410.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum
           Nigg]
 gi|270289041|ref|ZP_06195343.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum
           Weiss]
 gi|301336414|ref|ZP_07224616.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum
           MopnTet14]
 gi|81548983|sp|Q9PL77|PNP_CHLMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|7190270|gb|AAF39102.1| polyribonucleotide nucleotidyltransferase [Chlamydia muridarum
           Nigg]
          Length = 693

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 95/249 (38%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKH 56
           +R+ GR   ++R IS+         GSCL   G+T    + T   E     +  +     
Sbjct: 313 IRVDGRSTTEIRPISIEVSFLPRTHGSCLFTRGETQSVAVCTLGGESMAQRFEDLNGDGA 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +     G  G R     ++  +AL  V+  ++     + ++ 
Sbjct: 373 ARFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHVLPEASRFPYTVRVES 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++ +++G +  A++ G  ++L D                 +K  VA I+ G++       
Sbjct: 429 NITESNGSSSMASVCGGCLSLMDAGV-------------PIKAPVAGIAMGLILDQDKAI 475

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T+ G I   Q   +    + +     L  AK   + ++ 
Sbjct: 476 VLSDISGIEDHLGDMDFKVAGTEEG-ITAFQMDIKVEGITHEIMEQALAQAKQGRSHILN 534

Query: 233 LQKDVISNE 241
           L   V+S+ 
Sbjct: 535 LMTQVMSSP 543



 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 85/235 (36%), Gaps = 33/235 (14%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
                +++ A G+ LVK  +T +      A+L E V        +     ++    +++G
Sbjct: 18  FETGKIARQANGAVLVKMNETWVFSSACAASLSEAVDFLPFRVDYQE---KFSSAGKTSG 74

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAA 129
             +KRE   GR   +   I R+I R+LR       +   Q++        DG T     A
Sbjct: 75  GFLKRE---GRPSEKEILISRLIDRSLRPSFPNRLMQDIQVLSYVW--SYDGKTLPDPLA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           I GA  AL                       VA +  G++ G  +V+    E     +D 
Sbjct: 130 ICGASAALA-------------ISEVPQNCIVAGVRVGLVEGKWVVNPTKDELDASKLDL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL---IKLQKDVISNE 241
               T S  ++ ++G       +++     +   +  IA +   I+  +  I  E
Sbjct: 177 VMAGTASA-VLMIEG--HCDFLTEEQVLEAIAFGQKYIAKICDAIEAWQKAIGKE 228


>gi|305431698|ref|ZP_07400867.1| polyribonucleotide nucleotidyltransferase [Campylobacter coli JV20]
 gi|304445293|gb|EFM37937.1| polyribonucleotide nucleotidyltransferase [Campylobacter coli JV20]
          Length = 738

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 90/247 (36%), Gaps = 22/247 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
           R  GR  N++R I++   +   A GSCL   G T  L  ATL  +    +      +N  
Sbjct: 355 RADGRNLNEVRPIAIETNILPNAHGSCLFTRGQTQALVVATLGSENDAQMVDVLTEKNPI 414

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +      Y     S G     +A   R+ G       +  RAL   +D +      I + 
Sbjct: 415 NERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSIDEN--YPYIIRLV 468

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A + G  +AL               +  + +G   AI         + 
Sbjct: 469 SEILESNGSSSMATVCGGSLALRAAGVPSLKLVAGVAMGLIFEGDQYAI---------LT 519

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     +  G I  +Q   +     Q      L  AK+    ++ + +
Sbjct: 520 DIMGLEDHDGDMDFKVAGSKDG-ITALQMDIKLGGIDQKILKEALYQAKEGRIHILNIME 578

Query: 236 DVISNEV 242
           + +   V
Sbjct: 579 EALKEIV 585



 Score = 82.8 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 84/242 (34%), Gaps = 60/242 (24%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72
           V+K A G+ L++ G + +L     EEK            +T +Y       G +P   G 
Sbjct: 38  VAKQAAGAVLMRQGKSVVLAAVAREEK----PVEEDFLPLTVQYIEKAYAAGKIP---GG 90

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            VKRE    +         R+I R+LR +         QI++   V+ AD     +  ++
Sbjct: 91  YVKRET---KPSDAETLTARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPQVDLQVMSL 145

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
             A VAL+     M             K  V  +  G +    +++ +  E     +D  
Sbjct: 146 NAASVALYLSDIPM-------------KAPVCGVRIGRIEEKFVLNPNNEELKNSTLDL- 191

Query: 191 FVMTDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKD 225
           +V      ++ ++  A     E   F                    S+D     L+LA+ 
Sbjct: 192 YVAGVKDELLMIEMRALPNQKEDEIFIEVPYADVLTQTTSQSMNELSEDEILEALSLAQK 251

Query: 226 RI 227
            I
Sbjct: 252 AI 253


>gi|262197030|ref|YP_003268239.1| polyribonucleotide nucleotidyltransferase [Haliangium ochraceum DSM
           14365]
 gi|262080377|gb|ACY16346.1| polyribonucleotide nucleotidyltransferase [Haliangium ochraceum DSM
           14365]
          Length = 711

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 94/241 (39%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59
           R+ GR  +++R IS    +   A GS L   G+T  L +AT+  +      +T  G +  
Sbjct: 321 RIDGRAYDEIRAISCEVGILPSAHGSALFTRGETQALVSATMGTRYDEQKLDTLLGGMQK 380

Query: 60  --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P  TG      + S R+ G       +  R++  V+         + +  +
Sbjct: 381 PFFLHYNFPPFCTGEAKPIRSTSRRELGHG----NLAERSIAQVMPEREDFPYTVRVVSE 436

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +++++G +  A++ GA ++L D    +        +  +++G   AI         + D+
Sbjct: 437 ILESNGSSSMASVCGASLSLMDAGVPVLSPVAGIAMGLMMEGERYAI---------LSDI 487

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    ++D     L  A+     ++    + 
Sbjct: 488 LGDEDHMGDMDFKVTGTARG-VCALQMDIKLKGLTRDILVEALEQARRGRMHILDKMAEA 546

Query: 238 I 238
           +
Sbjct: 547 L 547



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 83/237 (35%), Gaps = 30/237 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           EI +     +K A GS +V+ GDT +L TAT   K P          +T EY     S G
Sbjct: 14  EIIIETGKWAKQASGSVVVRCGDTMVLVTATA-SKSPR--VGMDFLPLTCEYQEKTYSAG 70

Query: 72  N----RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
                  +REA   R       + R++ R  R +         Q+I +            
Sbjct: 71  KIPGNFFRREA---RPSTDEVLVARLMDRPSRPLFPKLWRCETQLIANVVSFDQSNAADV 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TG+  ALH                    G VAA+  G + G  +    + E    D+
Sbjct: 128 LAMTGSSCALH-------------ISDIPWDGPVAAVRVGRVAGEFVAFPTFEEREQSDI 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ---KDVISNE 241
           D   V      IV V+G        +      L  A + +  LI LQ   +  +  E
Sbjct: 175 DM-IVSASRDAIVMVEGGMREVP--EQVLIDALLFAHEAVQPLIDLQEKLRAAVGKE 228


>gi|315124713|ref|YP_004066717.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315018435|gb|ADT66528.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
          Length = 719

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 22/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
           R  GR  N++R I++   +   A GSCL   G T  L  ATL  +    +      +N  
Sbjct: 336 RADGRSLNEVRPINIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G     +A   R+ G       +  RAL   VD +      I + 
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSVDEN--YPYVIRLV 449

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A + G  +AL               +  + + +  A+         + 
Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAV---------LT 500

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     +  G +  +Q   +     Q+     L  AK+    ++ + +
Sbjct: 501 DIMGLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 559

Query: 236 DV 237
           + 
Sbjct: 560 EA 561



 Score = 85.1 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 86/242 (35%), Gaps = 60/242 (24%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72
           V+K A G+ L++ G + +L T   EEK            +T +Y       G +P   G 
Sbjct: 19  VAKQAAGAVLMRQGKSVVLATVAREEKQ----VEEDFLPLTVQYIEKAYAAGKIP---GG 71

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            VKRE    +         R+I R+LR +         QI++   V+ AD     +  ++
Sbjct: 72  YVKRET---KPSDAETLTARIIDRSLRPLFRKGYAYPTQIVV--MVLSADPKVDLQVMSL 126

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
             A VAL+     M             K  V  +  G + G  I++ +  E     +D  
Sbjct: 127 NAASVALYLSDIPM-------------KAPVCGVRIGKIDGNFILNPNNEELQNSTLDL- 172

Query: 191 FVMTDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKD 225
           +V      ++ ++  A     E   F                    S+D     LNLA+ 
Sbjct: 173 YVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQK 232

Query: 226 RI 227
            I
Sbjct: 233 AI 234


>gi|86150855|ref|ZP_01069071.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|85842025|gb|EAQ59271.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 260.94]
          Length = 719

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 22/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
           R  GR  N++R I++   +   A GSCL   G T  L  ATL  +    +      +N  
Sbjct: 336 RADGRSLNEVRPINIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G     +A   R+ G       +  RAL   VD +      I + 
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSVDEN--YPYVIRLV 449

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A + G  +AL               +  + + +  A+         + 
Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAV---------LT 500

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     +  G +  +Q   +     Q+     L  AK+    ++ + +
Sbjct: 501 DIMGLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 559

Query: 236 DV 237
           + 
Sbjct: 560 EA 561



 Score = 85.1 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 86/242 (35%), Gaps = 60/242 (24%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72
           V+K A G+ L++ G + +L T   EEK            +T +Y       G +P   G 
Sbjct: 19  VAKQAAGAVLMRQGKSVVLATVAREEKQ----VEEDFLPLTVQYIEKAYAAGKIP---GG 71

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            VKRE    +         R+I R+LR +         QI++   V+ AD     +  ++
Sbjct: 72  YVKRET---KPSDAETLTARIIDRSLRPLFRKGYAYPTQIVV--MVLSADPKVDLQVMSL 126

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
             A VAL+     M             K  V  +  G + G  I++ +  E     +D  
Sbjct: 127 NAASVALYLSDIPM-------------KAPVCGVRIGKIDGNFILNPNNEELQNSTLDL- 172

Query: 191 FVMTDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKD 225
           +V      ++ ++  A     E   F                    S+D     LNLA+ 
Sbjct: 173 YVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQK 232

Query: 226 RI 227
            I
Sbjct: 233 AI 234


>gi|255513310|gb|EET89576.1| 3' exoribonuclease [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 258

 Score =  121 bits (305), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 90/231 (38%), Gaps = 21/231 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
           R   R     R++ ++R V  +AEGS     G T +L     ++E V  +      G + 
Sbjct: 21  REDSRGSMDFRDLKISRGVIDHAEGSAQADLGATKVLAGVKLVQEDV--YEDTPDQGNLV 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL-----GSRQII 113
               +LP +       E  +G     + E+ R++ RA+R+   +DL +L      +  + 
Sbjct: 79  VSAELLPLAAA-----EYETGPPSPEAIELGRVVDRAIRAGNCIDLKSLLLEEGKAWTVY 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN----KFQLSQVLKGHVAAISCGML 169
           +D  V+  DG    A++  A  A+ D              K +    +   V++ +   +
Sbjct: 134 VDVYVLNFDGNLFDASVIAAMSAILDARVPEYADGKADYTKREKKLKVDNVVSSTTFAKI 193

Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
               ++D    E+  +D       TD   I  +Q      +FS +   +++
Sbjct: 194 GKAILLDPTGNEELGMDARLTIS-TDGKMIRAMQK-GLAGSFSVEEIESLI 242


>gi|152991076|ref|YP_001356798.1| polynucleotide phosphorylase/polyadenylase [Nitratiruptor sp.
           SB155-2]
 gi|187610315|sp|A6Q4N2|PNP_NITSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|151422937|dbj|BAF70441.1| polyribonucleotide nucleotidyltransferase [Nitratiruptor sp.
           SB155-2]
          Length = 732

 Score =  121 bits (305), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 91/242 (37%), Gaps = 22/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
           R  GR    +R I +   +   A GSCL   G+T  L   T+ EK    +      +  +
Sbjct: 345 RADGRGLKDVRPIDIKTNILPSAHGSCLFTRGETQALVVCTIGEKTDAQMYEMLTSKGPE 404

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +      Y   P S G      A   R+ G       +  RAL  VVD+     +   + 
Sbjct: 405 YEHFMVHYNFPPFSVGEAKPISAPGRRELGHG----NLARRALEPVVDVPE--DKTYRLV 458

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A + G  +AL      + D      +  +++    AI         + 
Sbjct: 459 SEILESNGSSSMATVCGGALALKAANIDLADLVAGVAMGLIVEDDKYAI---------LT 509

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T  G +  +Q   +     Q+     L  A++    ++K+ +
Sbjct: 510 DIMGLEDHDGDMDFKVAGTHDG-VTAMQMDIKLGGVQQEILEQALQQAREARLHILKIME 568

Query: 236 DV 237
           + 
Sbjct: 569 EA 570



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 69/191 (36%), Gaps = 25/191 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVK 75
           V+K   GS L+K G T +L T  +E++    + +     +T +Y     + G      VK
Sbjct: 21  VAKQTNGSVLLKSGKTVMLATVVMEKE----MVDEDFLPLTVQYIEKSYAAGKIPGGFVK 76

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE    + G       R++ RALR +     L    I +   V+ AD             
Sbjct: 77  REQ---KPGDFETLTARIVDRALRPLFPKGYLYPTVITV--MVLSAD-----------PE 120

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
           +    L      +  F     ++  V+ +    + G  + +    +     +D     T 
Sbjct: 121 SDLQVLALNAASAALFVSDIPVRKAVSGLRVAKVDGEVLFNPPLSKLKESTLDLYLAGTK 180

Query: 196 SGHIVEVQGSA 206
              ++ ++ +A
Sbjct: 181 E-ELLMIEMAA 190


>gi|88658296|ref|YP_507529.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia chaffeensis
           str. Arkansas]
 gi|123493143|sp|Q2GGA4|PNP_EHRCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|88599753|gb|ABD45222.1| polyribonucleotide nucleotidyltransferase [Ehrlichia chaffeensis
           str. Arkansas]
          Length = 796

 Score =  121 bits (305), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 89/245 (36%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  +++R+I +   V   A GS L   G+T  L    L           +   +  
Sbjct: 319 RIDGRAFDEIRDIEIEVDVLPKAHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P + G      A     G R     ++  RA+R V+   +     I +  +
Sbjct: 379 NFLLHYNFPPYAVGE----SAALRAPGRREIGHGKLAWRAIRYVLPEKSDFPYTIRVVSE 434

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + ++DG +  A + GA +AL D                 +K  VA I+ G++        
Sbjct: 435 ITESDGSSSMATVCGASLALMDTGV-------------PIKSPVAGIAMGLIKEDDRFII 481

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   + +    D     L  AKD    ++  
Sbjct: 482 LSDILGDEDHLGDMDFKVAGTAEG-VTALQMDMKISGIDIDIIEKALLQAKDGRMHILSK 540

Query: 234 QKDVI 238
              VI
Sbjct: 541 MNAVI 545



 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 81/224 (36%), Gaps = 31/224 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
           +++ A G+ +V +  T +L T      +E V       +    +   G +P   G  +KR
Sbjct: 23  IARQASGAVMVSYAGTTVLATVVTGKTKEPVDFLPLTVQFVAKSYAVGKIP---GGFLKR 79

Query: 77  EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--RTAAITGAW 134
           E   G+   R   I R+I R++R +          I I C+++  D  T     A+ GA 
Sbjct: 80  E---GKPSDRETLISRLIDRSIRPLFPAGFYDE--ISIVCNLLSYDTVTPPEVTALVGAT 134

Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGYPIVDLDYGEDSTIDVDANFV 192
            AL                     G V     G L   G  +++    E     +D  F+
Sbjct: 135 AALS-------------ISGVPFNGLVVGARVGYLPSEGKYLLNASADEMLCSSLDL-FL 180

Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             +   ++ V   +E +  S+      +        ++I L K+
Sbjct: 181 SGNEDSVLMV--ESEASELSESQMLGAITFGHQHCQEVINLIKE 222


>gi|78222801|ref|YP_384548.1| polynucleotide phosphorylase/polyadenylase [Geobacter
           metallireducens GS-15]
 gi|123729281|sp|Q39VA1|PNP_GEOMG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78194056|gb|ABB31823.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Geobacter
           metallireducens GS-15]
          Length = 697

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 91/246 (36%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I+    +     GS L   G+T  L  ATL         ++ +G    
Sbjct: 313 RIDGRDTKTIRPITSEVGILPRVHGSALFTRGETQALVAATLGTSSDEQRIDSLYGESRK 372

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R A   R+ G       +  RAL  V+         I I  D
Sbjct: 373 RFMLHYNFPPFSVGETSFRLAPGRREIGHGY----LAERALERVLPKHDDFPYTIRIVSD 428

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           +++++G +  A++ G  +++ D                 +   VA I+ G++        
Sbjct: 429 ILESNGSSSMASVCGGALSMMDAGV-------------PISAPVAGIAMGLIKEGDDIAI 475

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     L  AK+    ++  
Sbjct: 476 LSDILGDEDHLGDMDFKVAGTSTG-VTAIQMDIKITGVTREIMGKALEQAKEGRLHILGK 534

Query: 234 QKDVIS 239
             + ++
Sbjct: 535 MAEALA 540



 Score = 78.2 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 75/230 (32%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R I++      K A G+ +V  G+T +L TA    + +E    +     +       G +
Sbjct: 13  RTITIATGKMAKQASGAVMVSCGETMVLVTAVALKSAKEGQDFFPLTVNYQEKAYAGGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR         R I R +R +   + L   QI+        D    
Sbjct: 73  P---GGFFKRE---GRPTENETLTCRFIDRPIRPLFPENFLNDTQIMATVVSADQDNDPG 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                     G +A +  G + G  I +    E     
Sbjct: 127 ILAMIGASAAL-------------EVSDIPFFGPIAGVKVGRVDGKFICNPT-AEQLAAS 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                V      ++ V+G A  A  S+      +      +  +I  Q +
Sbjct: 173 DLEVVVAASRDAVIMVEGGA--AEISEADLLEAIFFGHASVQPIIDAQIE 220


>gi|57168155|ref|ZP_00367294.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter
           coli RM2228]
 gi|57020529|gb|EAL57198.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter
           coli RM2228]
          Length = 719

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 90/247 (36%), Gaps = 22/247 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
           R  GR  N++R I++   +   A GSCL   G T  L  ATL  +    +      +N  
Sbjct: 336 RADGRNLNEVRPIAIETNILPNAHGSCLFTRGQTQALVVATLGSENDAQMVDVLTEKNPI 395

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +      Y     S G     +A   R+ G       +  RAL   +D +      I + 
Sbjct: 396 NERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSIDEN--YPYIIRLV 449

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A + G  +AL               +  + +G   AI         + 
Sbjct: 450 SEILESNGSSSMATVCGGSLALRAAGVPSLKLVAGVAMGLIFEGDQYAI---------LT 500

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     +  G I  +Q   +     Q      L  AK+    ++ + +
Sbjct: 501 DIMGLEDHDGDMDFKVAGSKDG-ITALQMDIKLGGIDQKILKEALYQAKEGRIHILNIME 559

Query: 236 DVISNEV 242
           + +   V
Sbjct: 560 EALKEIV 566



 Score = 82.4 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 84/242 (34%), Gaps = 60/242 (24%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72
           V+K A G+ L++ G + +L     EEK            +T +Y       G +P   G 
Sbjct: 19  VAKQAAGAVLMRQGKSVVLAAVAREEK----PVEEDFLPLTVQYIEKAYAAGKIP---GG 71

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            VKRE    +         R+I R+LR +         QI++   V+ AD     +  ++
Sbjct: 72  YVKRET---KPSDAETLTARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPQVDLQVMSL 126

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
             A VAL+     M             K  V  +  G +    +++ +  E     +D  
Sbjct: 127 NAASVALYLSDIPM-------------KAPVCGVRIGRIEEKFVLNPNNEELKNSTLDL- 172

Query: 191 FVMTDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKD 225
           +V      ++ ++  A     E   F                    S+D     L+LA+ 
Sbjct: 173 YVAGVKDELLMIEMRALPNQKEDEIFIEVPYADVLTQTTSQSMNELSEDEILEALSLAQK 232

Query: 226 RI 227
            I
Sbjct: 233 AI 234


>gi|257096723|sp|B3DZ86|PNP_METI4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 707

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 58/236 (24%), Positives = 95/236 (40%), Gaps = 32/236 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           I        K+A+GS  V +G+T +L TA     L+E         ++    A  G  P 
Sbjct: 14  IVFETGKLAKFADGSVTVSYGETAVLVTAVSVTELKEDQDFLPLQVEYREKAAAAGRFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126
             G   ++E   GR   +     RMI R LR +         QI+    ++ ADG     
Sbjct: 73  --GGYFRKE---GRPTDKEILTSRMIDRPLRPLFPKGYFYETQIL--GTLLSADGQNDPD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI GA  AL                     G V A+  G + G  I++  + E    D
Sbjct: 126 VMAINGASAAL-------------MVSDIPFYGPVGAVRIGQIDGRWIINPTHREREISD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           +D  +V ++  + + ++GSA    F ++ F   L  A   + ++I  QK+ ++ +V
Sbjct: 173 IDLVYVGSEH-YPLMIEGSARE--FPEEEFVKALEFAHQHVQEVIAAQKE-LAEKV 224



 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 89/253 (35%), Gaps = 33/253 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R  GR    +R I++   V   + GS L   G+T  L  ATL      +++  +    + 
Sbjct: 313 RCDGRGPEDIRPIAIETSVVPRSHGSSLFCRGETQALCMATLASLNEAQELDAYGGGEQS 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +    S R+ G       +  R+L  V+         I +  
Sbjct: 373 KRFLLHYFFPPFSVGEVGRITGQSRREIGHG----ALAERSLLPVIPSETDFPYAIRVSS 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171
           ++++++G T  A + G  +AL D                 LK  VA IS G++ G     
Sbjct: 429 EILESNGSTSMATVCGGSLALMDAGV-------------PLKTSVAGISVGLVKGKEEDF 475

Query: 172 -----YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                  + D+   ED   D+D     T  G I   Q   +      D     +  ++  
Sbjct: 476 DWSRYCLLTDILGLEDHYGDMDFKIAGTRKG-ITGFQLDLKLRGIPLDVMAKAIFQSQKA 534

Query: 227 IADLIKLQKDVIS 239
              ++     VI+
Sbjct: 535 RMVILDCMDKVIN 547


>gi|212639515|ref|YP_002316035.1| polynucleotide phosphorylase/polyadenylase [Anoxybacillus
           flavithermus WK1]
 gi|226702595|sp|B7GG69|PNP_ANOFW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|212560995|gb|ACJ34050.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Anoxybacillus flavithermus WK1]
          Length = 702

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 91/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 VRPDGRKVDEIRPLSSAVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGIEET 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G            G R      +  RAL  V+         I +  
Sbjct: 375 KRFMHHYNFPPFSVGE----TGAMRGPGRREIGHGALGERALEPVIPSEKEFPYTIRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKSGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T+ G +  +Q   +    S++     L  A+    +++K
Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTEKG-VTALQMDIKIKGLSREILEEALQQARKGRLEILK 536

Query: 233 LQKDVISNE 241
                IS  
Sbjct: 537 HMMQTISEP 545



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 89/229 (38%), Gaps = 26/229 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RPLTVEIGELAKQANGAVLVRYGDTVVLSTATASKEPKSVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D     
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCSPEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  +++    +    D+
Sbjct: 129 AAMFGSSLAL-------------TISDIPFEGPIAGVTVGRVDGKFVINPSVAQMEQSDM 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                 T    I  V+  A      ++     +    + I  LI  Q+D
Sbjct: 176 HLVVAGTKDA-INMVEAGANEVP--EEVMLEAIMFGHEEIKRLIAFQED 221


>gi|217077873|ref|YP_002335591.1| polynucleotide phosphorylase/polyadenylase [Thermosipho africanus
           TCF52B]
 gi|257096711|sp|B7IE23|PNP_THEAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|217037728|gb|ACJ76250.1| polyribonucleotide nucleotidyltransferase [Thermosipho africanus
           TCF52B]
          Length = 697

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 93/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH----LLTTATLEEKVPMWIRNTKH 56
           +R  GR+ +++R I+    V     GS L   G+T     +   A +EE++   I     
Sbjct: 320 IRADGRKVDEIRPITCEVGVLPRTHGSALFTRGETQSLGIVTLGAPMEEQIVDTIMEEGT 379

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G          R+ G       +  RAL++VV         + +  
Sbjct: 380 KRFILHYNFPPFSVGEVKPLRGPGRREIGHGH----LAERALKAVVPSEEEFPYVVRVVS 435

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           ++++++G +  A +    +AL D                 ++ HVA ++ G++       
Sbjct: 436 EILESNGSSSMATVCSGSLALMDAGV-------------PIRTHVAGVAMGLIIEDGQEV 482

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I   Q   + A   ++     L  AK+    ++ 
Sbjct: 483 VLTDIQGLEDHWGDMDFKVAGTRNG-ITAFQMDCKVAGVGEELLKRALQQAKEARMKILD 541

Query: 233 LQKDVISNE 241
           +  + I   
Sbjct: 542 IMFNTIEKP 550



 Score = 94.0 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 97/239 (40%), Gaps = 37/239 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY------- 63
           R++ +    V+K + GS  V+FGD+ +L TA + +     I       +T EY       
Sbjct: 13  RKMIVQHGKVAKQSAGSVWVQFGDSVVLATANISD---RTIEGVDFVPLTVEYQEKFYAA 69

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           G +P   G  +KRE   G+    +    R+I R +R +         Q+I+   V+  DG
Sbjct: 70  GKIP---GGFIKRE---GKPSESAILSARLIDRPIRPLFPKYLRNDVQLIVT--VLSVDG 121

Query: 124 GT--RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
            T      I  A +AL+                   +G VA +  G + G  +V     +
Sbjct: 122 NTPPDVTGIIAASLALN-------------ISKIPFEGIVAGVRLGYVDGKFVVFPTEEQ 168

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                +D   V      I  V+G A+    +++     L +A D I  +I+ +++++S 
Sbjct: 169 LEKSRLDI-VVAGSKDAITMVEGEAKE--VTEEEMVNALMVAHDAIKQIIEFEEEILSQ 224


>gi|294101702|ref|YP_003553560.1| polyribonucleotide nucleotidyltransferase [Aminobacterium
           colombiense DSM 12261]
 gi|293616682|gb|ADE56836.1| polyribonucleotide nucleotidyltransferase [Aminobacterium
           colombiense DSM 12261]
          Length = 748

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 97/251 (38%), Gaps = 30/251 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-----LEEKVPMWIRNTK- 55
           R  GR  +++R I+    V     GS L   G+T  L  AT     +++++   ++  + 
Sbjct: 312 RADGRAMDEIRPITCEVGVLPRVHGSALFTRGETQALVVATLGMMGVDDQILDGLKQDEP 371

Query: 56  HGWITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +      Y   P S G  R  R       G R      +  RALR ++         + +
Sbjct: 372 NKRFILHYNFPPYSVGEVRPMRG-----PGRREIGHGALAERALRPIIPDEVEFPYVVRL 426

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             D+++++G +  A+I G  +AL +                 +  HVA I+ G++     
Sbjct: 427 VSDILESNGSSSQASICGGSLALMN-------------SGVPINRHVAGIAMGLIKEGEK 473

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G +  +Q   +    +++     LN AK+    +
Sbjct: 474 VEILSDIQGLEDHYGDMDFKVAGTREG-VTALQMDNKAGGITREVLKKALNQAKEGRLFI 532

Query: 231 IKLQKDVISNE 241
           ++  +  I   
Sbjct: 533 LEKMESAIEEP 543



 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 87/232 (37%), Gaps = 33/232 (14%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
           E++     V+K A GS + + GDT +LTT     T    +  +             G +P
Sbjct: 13  EMTFETGCVAKQANGSIVARSGDTVVLTTTCISDTPRTGIDFFPLLVDFEERYYSAGKIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125
              G  +KRE   GR    +    R+I R++RS+ D +      I +   V+  D     
Sbjct: 73  ---GGFIKRE---GRPTENAILSARVIDRSIRSLFDENLRYD--IHVVATVLSVDQLNPP 124

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A VAL                     G + A+  G +    +V+    E+  +
Sbjct: 125 SVLAINAASVAL-------------MISEIPWGGPIGAVRIGYINDQLVVNP--LEEQML 169

Query: 186 DVDAN-FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   +  V      I  V+  A     S++     L+LA   I  ++ +Q++
Sbjct: 170 ESKLDLLVSGHKDGITMVEAGANE--VSEELLVDALDLAHTEIKKIVAMQEE 219


>gi|221632640|ref|YP_002521861.1| polynucleotide phosphorylase/polyadenylase [Thermomicrobium roseum
           DSM 5159]
 gi|257096714|sp|B9KYR9|PNP_THERP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|221156259|gb|ACM05386.1| polyribonucleotide nucleotidyltransferase [Thermomicrobium roseum
           DSM 5159]
          Length = 790

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 89/241 (36%), Gaps = 16/241 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMWIRN--TKHG 57
           R  GR+ +++REI +   +     GS L   G T +L   T   +E+          +  
Sbjct: 325 RPDGRKPDEIREIWIQVGLLPRPHGSALFTRGQTQVLTVCTLGTKEEEQFLDSLGIEETK 384

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +    S R  G       +  RAL +V+         + +  +
Sbjct: 385 RYMHHYNFPPFSTGEIRRLRGPSRRDIGHG----ALAERALLAVLPSEDEFPYTMRLVSE 440

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A++ G+ +AL D    +        +     G V   + G      + D+
Sbjct: 441 VLSSNGSTSMASVCGSSLALMDAGVPIRKPVAGVAM-----GLVTDQTTGRY--TILTDI 493

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED+  D+D     T  G I  +Q   +    + +     L  A+     ++    +V
Sbjct: 494 QGIEDALGDMDFKVAGTRDG-ITAIQMDIKVMGITPEIMRDALEQARRGRLFILDKMSEV 552

Query: 238 I 238
           I
Sbjct: 553 I 553



 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 88/237 (37%), Gaps = 29/237 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGML 66
           R +++    V++ A+G+ LV++G+T +LTT        E +  +    ++       G +
Sbjct: 15  RLLTIETGRVAEQADGAVLVRYGETVVLTTVVGAKQPVEGIDFFPLTVEYEEKMYAAGKI 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   +RE   G+    +    R+  R +R +         Q+I        +    
Sbjct: 75  P---GGFFRRE---GKPSEAAILAARLTDRPIRPLFPKGYRNEVQVISTVLSADQENEPD 128

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             +I GA  AL                     G V A+  G L G  +++    +     
Sbjct: 129 VLSIIGASAAL-------------TLSDIPWYGPVGAVRIGELDGELVINPTSHQLLESR 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD--VISNE 241
           +D     T    I+ V+G A     S+D F   +  A   I  ++ +Q +   ++ +
Sbjct: 176 MDIVVAGTADA-ILMVEGQANE--ISEDRFIEAVVRAHQEIKRIVAVQLELQAVAGK 229


>gi|167754065|ref|ZP_02426192.1| hypothetical protein ALIPUT_02353 [Alistipes putredinis DSM 17216]
 gi|167658690|gb|EDS02820.1| hypothetical protein ALIPUT_02353 [Alistipes putredinis DSM 17216]
          Length = 737

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 93/244 (38%), Gaps = 16/244 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           RL GR+ +++R I         A GS +   G+T  LTT TL    +EKV   +      
Sbjct: 324 RLDGRRTDEIRPIWCEVGYLPAAHGSAIFTRGETQSLTTVTLGTKMDEKVKDEVLVQGTE 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG       +S R+ G       +  RAL+ +V +       + +  D
Sbjct: 384 QFVLHYNFPPFSTGEAKAARGLSRREIGHGH----LAWRALKPMVPVGEENPYAVRVVSD 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +++++G +  A +    +AL D    ++   +   +     G ++  + G      + D+
Sbjct: 440 ILESNGSSSMATVCAGTLALMDAGVKLKKPVSGIAM-----GLISDSATGRWA--VLSDI 492

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I   Q   +    S +     L  A+     ++    + 
Sbjct: 493 LGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEVLAKALEQARVGRMHILGKLTEC 551

Query: 238 ISNE 241
           I+  
Sbjct: 552 IAEP 555



 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 89/236 (37%), Gaps = 28/236 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           REI +      K A+GS +VK GDT LL T       +          ++    A  G  
Sbjct: 20  REIMIETGKLAKQADGSVVVKMGDTMLLGTVVAAKDAKPDTDFMPLQVEYKEKYAACGRY 79

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+       + R+I RALR +         ++ +  ++I AD   +
Sbjct: 80  P---GGFMKRE---GKANDSEILVARLIDRALRPLFPSD--YHAEVYVTVNLISADKDIQ 131

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                       D L  +   +          G ++ +    + G  +++  + +    D
Sbjct: 132 -----------PDALAGLAASAALAVSDIPFGGPISEVRVARIGGQYVINPAFSQMQDAD 180

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           +D   V     +I+ V+G  E    S++     +  A + I     +Q + +S E+
Sbjct: 181 LDI-MVGGTIDNILMVEG--EMKEVSEEVMLGAIKFAHEEIKKHCAVQIE-LSKEL 232


>gi|299823025|ref|ZP_07054911.1| polyribonucleotide nucleotidyltransferase [Listeria grayi DSM
           20601]
 gi|299816554|gb|EFI83792.1| polyribonucleotide nucleotidyltransferase [Listeria grayi DSM
           20601]
          Length = 722

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 93/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATL--EEKVPMWIRNTKH 56
           +R  GR+ N++R +S    +     GS L   G T  L   T     E ++   +   ++
Sbjct: 317 IRPDGRKVNEIRPLSSETGLLPRVHGSGLFTRGQTQALSICTLAPLREHQIIDGLGTEEY 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G    R A   R+ G       +  RAL+ V+         I +  
Sbjct: 377 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           +V++++G +  A+I G+ +A+ D                 +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICGSTLAMMDAGV-------------PIKAPVAGIAMGLVKLGDDYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S+      L  AK+    +++
Sbjct: 480 ILTDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILHEALEQAKEGRLHILE 538

Query: 233 LQKDVISNE 241
                I+  
Sbjct: 539 HLNATIAGP 547



 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 88/230 (38%), Gaps = 26/230 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++S+    ++K A G+ LV++GDT +LT A           +     +       G +P 
Sbjct: 16  KLSIEVGQLAKQASGAALVRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR   ++    R+I R +R +         QI      +  D     A
Sbjct: 75  --GGFLKRE---GRPSDKATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMA 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +  G++ G  +++    +    D++
Sbjct: 130 AMLGSSIALC-------------ISDIPFDGPIAGVDVGLIDGKYVINPTPEQFEKSDIN 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                T    I  V+  A+    S++     +    + I  L K Q++++
Sbjct: 177 LTVAGTYEA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCKFQEEIV 223


>gi|205356272|ref|ZP_03223038.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|205345877|gb|EDZ32514.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni CG8421]
          Length = 719

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 88/242 (36%), Gaps = 22/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
           R  GR  N++R IS+   +   A GSCL   G T  L  ATL  +    +      +N  
Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDSQMIDLLTEKNPI 395

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G     +A   R+ G       +  RAL   VD +      I + 
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSVDEN--YPYVIRLV 449

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A + G  +AL               +  + + +  A+         + 
Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAV---------LT 500

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     +  G +  +Q   +     Q+     L  AK+    ++ + +
Sbjct: 501 DIMGLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQEILKQALYQAKEGRIHILNIME 559

Query: 236 DV 237
           + 
Sbjct: 560 EA 561



 Score = 85.5 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 85/242 (35%), Gaps = 60/242 (24%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72
           V+K A G+ L++ G + +L T   EEK            +T +Y       G +P   G 
Sbjct: 19  VAKQAAGAVLMRQGKSVVLATVAREEKQ----VEEDFLPLTVQYIEKAYAAGKIP---GG 71

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            VKRE    +         R+I R+LR +         QI++   V+ AD     +   +
Sbjct: 72  YVKRET---KPSDAETLTARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPKVDLQVMGL 126

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
             A VAL+     M             K  V  +  G + G  I++ +  E     +D  
Sbjct: 127 NAASVALYLSDIPM-------------KAPVCGVRIGKIDGNFILNPNNEELQNSTLDL- 172

Query: 191 FVMTDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKD 225
           +V      ++ ++  A     E   F                    S+D     LNLA+ 
Sbjct: 173 YVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQK 232

Query: 226 RI 227
            I
Sbjct: 233 AI 234


>gi|119898394|ref|YP_933607.1| polynucleotide phosphorylase/polyadenylase [Azoarcus sp. BH72]
 gi|187470932|sp|A1K7B5|PNP_AZOSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|119670807|emb|CAL94720.1| polyribonucleotide nucleotidyltransferase [Azoarcus sp. BH72]
          Length = 699

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 95/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L  ATL       I +   G    
Sbjct: 316 RIDGRDTRTVRPIDIRVGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDAIAGEYKE 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +      R+ G      R+  RAL +++      S  I +  +
Sbjct: 376 RFMLHYNFPPFSTGETGRFGVTKRREIGHG----RLAKRALVAMLPKGEDFSYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D    M             K HVA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGGSLALMDAGVPM-------------KDHVAGIAMGLIKDGNRFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G +  +Q   +    +++     L  A +    ++K 
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTENG-VTALQMDIKIQGITKEIMQVALAQAGEGRLHILKQ 537

Query: 234 QKDVIS 239
            KD + 
Sbjct: 538 MKDALG 543



 Score = 69.0 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 76/234 (32%), Gaps = 38/234 (16%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A G+ +V   DT +L T       +     +     +       G +P 
Sbjct: 16  VTLETGEVARQAGGAVIVNVDDTVVLATVVAAKDAKPGQDFFPLTVDYVEKFYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +     R+I R +R +         Q+I+    +  +      
Sbjct: 75  --GGFFKRE---GRPTEKETLTSRLIDRPIRPLFPEGFYNEVQVIVTVLSLNPEVDADIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST---- 184
           A+  A  AL                     G + A   G   G  +++    +  T    
Sbjct: 130 AMIAASAALSISGI-------------PFDGPIGAARVGYADGQYLLNPTVEQLKTSKLN 176

Query: 185 ---IDVDANFVM--TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
                  +  +M  +++  + E         F  +   A +N     I +L+++
Sbjct: 177 LVVAGTASAVLMVESEADELSEQVMLG-AVVFGHEQMQAAIN----AINELVEV 225


>gi|86150580|ref|ZP_01068803.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|88596155|ref|ZP_01099392.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|218562865|ref|YP_002344644.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|123042773|sp|Q0P903|PNP_CAMJE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|85838931|gb|EAQ56197.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|88190996|gb|EAQ94968.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|112360571|emb|CAL35368.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|284926478|gb|ADC28830.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           subsp. jejuni IA3902]
 gi|315927122|gb|EFV06473.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315929391|gb|EFV08594.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 719

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 88/242 (36%), Gaps = 22/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
           R  GR  N++R IS+   +   A GSCL   G T  L  ATL  +    +      +N  
Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDSQMIDLLTEKNPI 395

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G     +A   R+ G       +  RAL   VD +      I + 
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSVDEN--YPYVIRLV 449

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A + G  +AL               +  + + +  A+         + 
Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAV---------LT 500

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     +  G +  +Q   +     Q+     L  AK+    ++ + +
Sbjct: 501 DIMGLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQEILKQALYQAKEGRIHILNIME 559

Query: 236 DV 237
           + 
Sbjct: 560 EA 561



 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 86/242 (35%), Gaps = 60/242 (24%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72
           V+K A G+ L++ G + +L T   EEK            +T +Y       G +P   G 
Sbjct: 19  VAKQAAGAVLMRQGKSVVLATVAREEKQ----VEEDFLPLTVQYIEKAYAAGKIP---GG 71

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            VKRE    +         R+I R+LR +         QI++   V+ AD     +  ++
Sbjct: 72  YVKRET---KPSDAETLTARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPKVDLQVMSL 126

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
             A VAL+     M             K  V  +  G + G  I++ +  E     +D  
Sbjct: 127 NAASVALYLSDIPM-------------KAPVCGVRIGKIDGNFILNPNNEELQNSTLDL- 172

Query: 191 FVMTDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKD 225
           +V      ++ ++  A     E   F                    S+D     LNLA+ 
Sbjct: 173 YVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQK 232

Query: 226 RI 227
            I
Sbjct: 233 AI 234


>gi|289578380|ref|YP_003477007.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           italicus Ab9]
 gi|289528093|gb|ADD02445.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           italicus Ab9]
          Length = 700

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 91/245 (37%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R+ GR  + +R I     V     GS +   G T +LT AT     + ++   I + + 
Sbjct: 312 IRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGIGDEEA 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G          R+ G       +  RAL  V+         I +  
Sbjct: 372 KRYMHHYNFPPYSVGEVRPLRGPGRREIGHG----ALAERALEPVIPSEEEFPYTIRLVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ ++G T  A++ G+ +AL D    ++       +  + +G V ++         + D
Sbjct: 428 EVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSV---------LTD 478

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T+ G I  +Q   +     ++     L  A+     ++    +
Sbjct: 479 IQGIEDFLGDMDFKVAGTEKG-ITAIQMDIKIPGIDKEILKMALEKARKGRLYILSKMLE 537

Query: 237 VISNE 241
           VI   
Sbjct: 538 VIKEP 542



 Score = 88.2 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 84/223 (37%), Gaps = 27/223 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R++ +    V++ A G+  VK+GDT +L TA       E +  +    ++       G +
Sbjct: 13  RKLIVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEERLYSVGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R +R +         QII     +  D    
Sbjct: 73  P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPHGYRNDVQIIATILSVDPDVQPE 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ VAL                     G   A++ G++ G  +++ ++ +     
Sbjct: 127 IVAMIGSSVALS-------------ISDIPFNGPTGAVAVGLVDGQFVINPNHDQREKSL 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
           +      T    IV V+  A+     ++     +  A + I  
Sbjct: 174 MHLVVSGTKDA-IVMVEAGAKEVP--EETMLEAIMYAHEYIKQ 213


>gi|225452398|ref|XP_002273777.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 997

 Score =  120 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 86/240 (35%), Gaps = 11/240 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           +R+ GR  N++R +           GS L   GDT +L T TL         ++  G   
Sbjct: 368 LRVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPGDAQRLDSLVGPPT 427

Query: 58  -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S     KR  ++ R+ G       +  +AL +V+         + I+ 
Sbjct: 428 KRFMLHYSFPPFSINEVGKRVGLNRREVGHGT----LAEKALLAVLPPEEEFPYTVRINS 483

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ +DG T  A + G  +AL D    + +      +   L   V   +  +     + D
Sbjct: 484 EVMASDGSTSMATVCGGSMALMDAGIPLREHVAGISVG--LVTEVDPSTNTIKDYRILTD 541

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I  +Q   + A    D     L  A      ++   + 
Sbjct: 542 ILGLEDHLGDMDFKIAGTRKG-ITAIQLDIKPAGIPLDIICECLEPALRGRLQILDRMEQ 600



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 75/221 (33%), Gaps = 34/221 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R I+     ++++A G+ ++   +T +L+T                  +T +Y     + 
Sbjct: 67  RSITFETGKIARFANGAVVMSMDETKVLSTV----ASSKGDAARDFLPLTVDYQEKHFAQ 122

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--G 124
           G      ++RE        R     R+I R +R +         Q++    V+ +DG   
Sbjct: 123 GVIPTTFMRREGAPR---ERELLCGRLIDRPIRPLFPAGFYHEVQVMAS--VLSSDGKQD 177

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A      AL                     G +  I  G +CG  IV+    E S 
Sbjct: 178 PDVMAANATSAAL-------------MLSDIPWGGPIGVIRIGRICGQFIVNPSMDELSL 224

Query: 185 IDVDANFVMTDSGHI-VEVQGSAERATFSQDHFFAMLNLAK 224
            D++  +  T    + ++VQ        S+    A L LA 
Sbjct: 225 SDLNLVYACTRDKTLMIDVQA----REISEKDLEAALRLAH 261


>gi|297544656|ref|YP_003676958.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842431|gb|ADH60947.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 700

 Score =  120 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 91/245 (37%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R+ GR  + +R I     V     GS +   G T +LT AT     + ++   I + + 
Sbjct: 312 IRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGIGDEEA 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G          R+ G       +  RAL  V+         I +  
Sbjct: 372 KRYMHHYNFPPYSVGEVRPLRGPGRREIGHG----ALAERALEPVIPSEEEFPYTIRLVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ ++G T  A++ G+ +AL D    ++       +  + +G V ++         + D
Sbjct: 428 EVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSV---------LTD 478

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T+ G I  +Q   +     ++     L  A+     ++    +
Sbjct: 479 IQGIEDFLGDMDFKVAGTEKG-ITAIQMDIKIPGIDKEILKMALEKARKGRLYILSKMLE 537

Query: 237 VISNE 241
           VI   
Sbjct: 538 VIKEP 542



 Score = 92.8 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 91/234 (38%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R++ +    V++ A G+  VK+GDT +L TA       E +  +    ++       G +
Sbjct: 13  RKLIVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEERLYSVGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R +R +         QII     +  D    
Sbjct: 73  P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPHGYRNDVQIIATILSVDPDVQPE 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ VAL                     G   A++ G++ G  +++ ++ +     
Sbjct: 127 IVAMIGSSVALS-------------ISDIPFNGPTGAVAVGLVDGQFVINPNHDQREKSL 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    IV V+  A+     ++     +  A + I  +++  ++++  
Sbjct: 174 MHLVVSGTKDA-IVMVEAGAKEVP--EETMLEAIMYAHEYIKQIVEFIEEIVKE 224


>gi|283956649|ref|ZP_06374128.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|283791898|gb|EFC30688.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 1336]
          Length = 719

 Score =  120 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 87/242 (35%), Gaps = 22/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
           R  GR  N++R IS+   +   A GSCL   G T  L  ATL  +    +      +N  
Sbjct: 336 RADGRSLNEVRPISIETNLLPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G     +A   R+ G       +  RAL   +D +      I + 
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSIDEN--YPYVIRLV 449

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A + G  +AL               +  + +    A+         + 
Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDSKFAV---------LT 500

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     +  G +  +Q   +     Q+     L  AK+    ++ + +
Sbjct: 501 DIMGLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 559

Query: 236 DV 237
           + 
Sbjct: 560 EA 561



 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 86/242 (35%), Gaps = 60/242 (24%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72
           V+K A G+ L++ G + +L T   EEK            +T +Y       G +P   G 
Sbjct: 19  VAKQAAGAVLMRQGKSVVLATVAREEKQ----VEEDFLPLTVQYIEKAYAAGKIP---GG 71

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            VKRE    +         R+I R+LR +         QI++   V+ AD     +  ++
Sbjct: 72  YVKRET---KPSDAETLTARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPKVDLQVMSL 126

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
             A VAL+     M             K  V  +  G + G  I++ +  E     +D  
Sbjct: 127 NAASVALYLSDIPM-------------KAPVCGVRIGKIDGNFILNPNNEELQNSTLDL- 172

Query: 191 FVMTDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKD 225
           +V      ++ ++  A     E   F                    S+D     LNLA+ 
Sbjct: 173 YVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQK 232

Query: 226 RI 227
            I
Sbjct: 233 AI 234


>gi|326528505|dbj|BAJ93434.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 726

 Score =  120 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 88/244 (36%), Gaps = 11/244 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           +R+ GR+ +++R +           GS L   GDT +L T TL         ++  G   
Sbjct: 112 LRVDGRRLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPT 171

Query: 58  -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S     KR  ++ R+ G       +  +AL +V+         + ++ 
Sbjct: 172 KRFMLHYSFPPFSINEVAKRGGLNRREVGHGT----LAEKALLAVLPPEGDFPYTVRVNS 227

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ +DG T  A++ G  +AL D    + +      +  V +               + D
Sbjct: 228 EVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSEADPTTGDISSY--RILTD 285

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I  +Q   + A    D     L  A+     ++     
Sbjct: 286 ILGLEDHLGDMDFKIAGTRRG-ITAIQLDIKPAGIPLDIVCESLEPARKARNQILDRMDQ 344

Query: 237 VISN 240
            IS 
Sbjct: 345 EIST 348


>gi|193214790|ref|YP_001995989.1| polynucleotide phosphorylase/polyadenylase [Chloroherpeton
           thalassium ATCC 35110]
 gi|226702635|sp|B3QY14|PNP_CHLT3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|193088267|gb|ACF13542.1| Polyribonucleotide nucleotidyltransferase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 729

 Score =  120 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 97/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR+ +++R IS+   +   A GS L   G+T  L T TL  K    + +T       
Sbjct: 332 RLDGRRLDEIRPISIELGLIPRAHGSALFTRGETQALVTLTLGTKKDAQLTDTLFDDADK 391

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +VS R+ G       +  RA++ VV         + +  D
Sbjct: 392 RFMLHYNFPPFSVGEVGRMGSVSRREIGHG----NLAERAIKKVVPAENAFPYTMRVVSD 447

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           +++++G +  A++ G  +A  D                 +K  VA I+ G++  G     
Sbjct: 448 ILESNGSSSMASVCGGTLAAMD-------------GGVPIKSPVAGIAMGLIKEGERYAV 494

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I   Q   +            L  A+     ++K+
Sbjct: 495 LSDILGNEDHLGDMDFKVAGTIDG-ITACQMDIKIDGLDYAIVEKALEQARQGRMHILKI 553

Query: 234 QKDVISNE 241
             + I++ 
Sbjct: 554 MDEAITSP 561



 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 80/226 (35%), Gaps = 22/226 (9%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGWITAEYGMLPRST 70
           + +      K A+GS +V   +T +L T   ++  P   +N          +Y    +  
Sbjct: 15  LKIETGKMAKQADGSAVVSLEETMVLATVVSKKDAPPANQNFFPLQVEYREKYSAAGKFP 74

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G  +KRE   GR   +     R+I RALR +         QII+   VI +D     A +
Sbjct: 75  GGFIKRE---GRPSDKEILSARLIDRALRPLFPDGYYQETQIIVT--VISSD-QLNDADV 128

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            G   A                     +  ++ +  G + G  ++     E    D+D  
Sbjct: 129 LGGIAASC----------ALMASDIPFENPMSEVRVGRINGDFLIFPHVQELEESDMDIC 178

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              T    I  ++G  E +  S+      +    D I  + + Q++
Sbjct: 179 IGGTAD-TICMLEG--EMSEISEAEMIGAIKFGHDVIRKICEAQRE 221


>gi|157415517|ref|YP_001482773.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|187610249|sp|A8FMV9|PNP_CAMJ8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157386481|gb|ABV52796.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|307748158|gb|ADN91428.1| Polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni M1]
          Length = 719

 Score =  120 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 88/242 (36%), Gaps = 22/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
           R  GR  N++R IS+   +   A GSCL   G T  L  ATL  +    +      +N  
Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G     +A   R+ G       +  RAL   VD +      I + 
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSVDEN--YPYVIRLV 449

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A + G  +AL               +  + + +  A+         + 
Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKHAV---------LT 500

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     +  G +  +Q   +     Q+     L  AK+    ++ + +
Sbjct: 501 DIMGLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 559

Query: 236 DV 237
           + 
Sbjct: 560 EA 561



 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 86/242 (35%), Gaps = 60/242 (24%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72
           V+K A G+ L++ G + +L T   EEK            +T +Y       G +P   G 
Sbjct: 19  VAKQAAGAVLMRQGKSVVLATVAREEKQ----VEEDFLPLTVQYIEKAYAAGKIP---GG 71

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            VKRE    +         R+I R+LR +         QI++   V+ AD     +  ++
Sbjct: 72  YVKRET---KPSDAETLTARIIDRSLRPLFPKGYTYPTQIVV--MVLSADPKVDLQVMSL 126

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
             A VAL+     M             K  V  +  G + G  I++ +  E     +D  
Sbjct: 127 NAASVALYLSDIPM-------------KAPVCGVRIGKIDGNFILNPNNEELQNSTLDL- 172

Query: 191 FVMTDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKD 225
           +V      ++ ++  A     E   F                    S+D     LNLA+ 
Sbjct: 173 YVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQK 232

Query: 226 RI 227
            I
Sbjct: 233 AI 234


>gi|237747627|ref|ZP_04578107.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
           OXCC13]
 gi|229378989|gb|EEO29080.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
           OXCC13]
          Length = 713

 Score =  120 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 95/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I++   V     GS L   G+T  L  ATL         +   G    
Sbjct: 320 RIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTSRDNQKIDALMGEYSD 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +      R+ G      R+  RAL + +      S  I +  +
Sbjct: 380 AFMMHYNMPPFATGETGRVGTPKRREIGHG----RLAKRALIACLPSQEEFSYSIRLVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           +++++G +  A++ G  +AL D                 +K HVA I+ G++        
Sbjct: 436 IMESNGSSSMASVCGGSLALMDAGV-------------PVKNHVAGIAMGLIKEGNKFAV 482

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     L  A++    ++  
Sbjct: 483 LTDILGDEDHLGDMDFKVAGTANG-VNALQMDIKIQGITKEIMQVALAQAREGRMHILSK 541

Query: 234 QKDVISN 240
            ++ +  
Sbjct: 542 MQEAMPQ 548



 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 81/233 (34%), Gaps = 38/233 (16%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
           +++    +++ A G+ +V   DT +L T   ++ V      +     +   +   G +P 
Sbjct: 16  VTMETGEIARQASGAVMVSVDDTVVLATVVAKDDVKPGQDFFPLTVDYIEKSYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  KRE   GR   +     R+I R +R +         Q+II    +  +      
Sbjct: 75  --GSFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGYFNEVQVIIHVLSVNPEVDPDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++  A  AL                     G + A   G + G  +++    +     +D
Sbjct: 130 SMIAASAALCVSGI-------------PFNGPLGAARVGYIDGQYVLNPTASQLPLSKMD 176

Query: 189 ANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232
                T+   ++ V+  AE            F  +    +++     I +L++
Sbjct: 177 LVVAGTEQA-VLMVESEAEELPEDIMLGAVVFGHEQMKVVID----AIDELVR 224


>gi|328950321|ref|YP_004367656.1| Polyribonucleotide nucleotidyltransferase [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450645|gb|AEB11546.1| Polyribonucleotide nucleotidyltransferase [Marinithermus
           hydrothermalis DSM 14884]
          Length = 722

 Score =  120 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 93/246 (37%), Gaps = 27/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           R  GR    +R+I +   V   A GS +   G+T +L T TL       I +     +  
Sbjct: 333 RADGRGPTDIRDIWIEVDVLPRAHGSAIFTRGETQVLGTVTLGTGRDEQIIDDLGIDESD 392

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +    S R+ G       +  RALR V+         I I  D
Sbjct: 393 PFLVHYNFPPYSTGEVKRLRGTSRREVGHG----NLAKRALRPVLPDKDAFPYTIRIVGD 448

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           V++++G +  A      +AL D                 +K  VA I+ G++    G P+
Sbjct: 449 VLESNGSSSMATTCAGCLALMDAGV-------------PIKKPVAGIAMGLVMPETGEPV 495

Query: 175 V--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +  D+   ED+  D+D     T  G +  +Q   +    + +     L  A+     ++ 
Sbjct: 496 ILTDILGMEDALGDMDFKVTGTRDG-VTALQMDIKIKGLTPEIMRRALEQARQARLAILD 554

Query: 233 LQKDVI 238
             + V+
Sbjct: 555 QMEAVL 560



 Score = 91.7 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 82/231 (35%), Gaps = 28/231 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           RE+ +     +K   GS  V++GDT ++ TA    +            +T E+     + 
Sbjct: 28  RELVIETGKYAKQVSGSVWVRYGDTVVMATA----QASPEPIEADFLPLTVEFEERHYAV 83

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G    + ++RE   GR G ++    R+  R +R +         Q+I+            
Sbjct: 84  GKIPGSFMRRE---GRPGEKAILSARLTDRPIRPLFPKGFRHEVQVILTVLSADQANPPD 140

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
               T A  AL                    +G +AA+  G + G  +++    +    D
Sbjct: 141 VLGPTAASAAL-------------MLSDIPWEGPIAAVRVGRIDGQFVLNPTLQQLEHSD 187

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +D   V      I+ V+  A      +D     L  A   I  ++ LQ+ +
Sbjct: 188 LDL-VVAGSKDAIIMVEAGANEVP--EDVLVEALEYAHQAIQPIVALQERM 235


>gi|242065778|ref|XP_002454178.1| hypothetical protein SORBIDRAFT_04g026110 [Sorghum bicolor]
 gi|241934009|gb|EES07154.1| hypothetical protein SORBIDRAFT_04g026110 [Sorghum bicolor]
          Length = 983

 Score =  120 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 91/244 (37%), Gaps = 11/244 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           +R+ GRQ +++R +           GS L   GDT +L T TL         ++  G   
Sbjct: 379 LRVDGRQLDEVRPLYCESNTYPVLHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPT 438

Query: 58  -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S     KR  ++ R+ G       +  +AL +V+   +     + ++ 
Sbjct: 439 KRFMLHYSFPPFSINEVAKRGGLNRREVGHGT----LAEKALLAVLPPESDFPYAVRVNS 494

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ +DG T  A++ G  +AL D    + +      +   L   V   +  +     + D
Sbjct: 495 EVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVG--LVSQVDPATGDISNYRILTD 552

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I  +Q   + A    D     L  A+     ++     
Sbjct: 553 ILGLEDHLGDMDFKIAGTRKG-ITAIQLDIKPAGIPLDIICESLEPARKARNQILDRMDQ 611

Query: 237 VISN 240
            IS 
Sbjct: 612 EIST 615



 Score = 75.1 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 82/241 (34%), Gaps = 43/241 (17%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLP 67
           R I+       ++A GS ++   DTH+L     A   E V  ++       +T +Y    
Sbjct: 77  RSIAFETGKMARFANGSVVISMEDTHVLSTVAAAKSSEPVRDFLP------LTVDYQEKQ 130

Query: 68  RSTG----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
            + G      ++RE   G    R     R+I R +R +         QI+++  V+ +DG
Sbjct: 131 YAQGVIPTTYMRRE---GAPKERELLCGRIIDRPIRPLFPPGFYHEVQIMVN--VLSSDG 185

Query: 124 --GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
                  A   +  AL                     G +  I  G + G  I++    E
Sbjct: 186 KQDPDVMAANASSAAL-------------MLSDIPWNGPIGVIRVGRIDGNFILNPTVDE 232

Query: 182 DSTIDVDANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAK-DRIADL---IKLQKD 236
                 D N +        + +   A     ++    A + LA  + I  +   I+L K 
Sbjct: 233 --LGSSDLNLIYACSRDKTLMIDVQARE--ITERDLQAGMKLAHSEAIKCIDPQIRLAKR 288

Query: 237 V 237
            
Sbjct: 289 A 289


>gi|302338543|ref|YP_003803749.1| polyribonucleotide nucleotidyltransferase [Spirochaeta smaragdinae
           DSM 11293]
 gi|301635728|gb|ADK81155.1| polyribonucleotide nucleotidyltransferase [Spirochaeta smaragdinae
           DSM 11293]
          Length = 697

 Score =  120 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 87/247 (35%), Gaps = 20/247 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-----TATLEEKVPMWIRNTK 55
           +R  GR    +R I+    +   A GS L   G+T  L      T   E+ +     +  
Sbjct: 312 VRTDGRDLETVRPITCEVGILDRAHGSALFTRGETQSLAVTTLGTVYDEQMMDNIDGDKT 371

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +      Y   P S G    R     R+ G       +  RAL +V+         I + 
Sbjct: 372 YENFMLHYNFPPFSVGE-TGRLTTGRREIGHGH----LAHRALEAVLPQKKDFPYTIRVV 426

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A + G  ++L      +        +  V +G  AA+         + 
Sbjct: 427 SEILESNGSSSMATVCGGTLSLLHAGVPIRKPVAGIAMGLVSEGDRAAV---------LT 477

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T+ G I   Q   + A  S D     L  AK     ++ +  
Sbjct: 478 DILGEEDHLGDMDFKVAGTEDG-ITAFQMDIKIAGISSDLMKRALEQAKKGRMHILGIMN 536

Query: 236 DVISNEV 242
             +   V
Sbjct: 537 ATLKEPV 543



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 85/239 (35%), Gaps = 33/239 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R++ L      K A G+   K+  + +L T     +  E +       ++       G +
Sbjct: 12  RDLILETGRMAKQANGAVFAKYEGSAVLATVCCGSSPMESLDFVPLQVEYNEKYYAAGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G  +KRE   GR   +   + R+I R +R +         QII     + AD    
Sbjct: 72  P---GGFLKRE---GRPKDKEILVSRLIDRPMRPLFSKEFKRELQIIPT--TVSADQINP 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  A+                     G V A+    +    I++  + + S 
Sbjct: 124 PDIVAMNAASAAVC-------------VSDIPFAGPVGAVRIANVDDELIINPSFDQISR 170

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD--VISNE 241
             ++     T  G I  V+G A+     ++   + + LA+  I  L + Q+    ++ +
Sbjct: 171 CTLEIVVSGTKDG-ITMVEGGAKEVP--EELLLSAIALAEPAIKKLCEAQEQLMALAGK 226


>gi|269123180|ref|YP_003305757.1| Polyribonucleotide nucleotidyltransferase [Streptobacillus
           moniliformis DSM 12112]
 gi|268314506|gb|ACZ00880.1| Polyribonucleotide nucleotidyltransferase [Streptobacillus
           moniliformis DSM 12112]
          Length = 732

 Score =  120 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 95/245 (38%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R  GR+ +++R ++    V K   GS L   G+T  L TATL  K    I +   G    
Sbjct: 340 RADGRKIDEIRPLNAQIDVLKMPHGSALFTRGETQALVTATLGSKEDEQIIDGMEGEYNK 399

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      A   R+ G       +  RAL++V+ L       + +  +
Sbjct: 400 KFFLHYNFPPFSVGEAGFMRAPGRRELGHG----NLAERALKAVMPLIDDFPYTVRVVSE 455

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  +AL                   +KG VA I+ G++        
Sbjct: 456 ITESNGSSSQASICGGSLALMAAGV-------------PIKGTVAGIAMGLIKEAENFTV 502

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     L  A      +I++
Sbjct: 503 LTDIQGLEDHLGDMDFKVAGTKKG-ITAIQMDIKIEGINKEIMEIALTQAHKGRMHIIEV 561

Query: 234 QKDVI 238
            +  I
Sbjct: 562 MEATI 566



 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 84/248 (33%), Gaps = 54/248 (21%)

Query: 13  EISLTRR-VSKYAEGSCLV---------------KFGDTHLLTTATLEEKVPMWIRNTKH 56
           E+ +    +++ A GS LV               +           ++E    +     +
Sbjct: 15  EVKIETGEIARQAGGSVLVTSGGTTVLVTTTRSKE-----------VKEGQDFFPLTVDY 63

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                  G  P   G  +KRE+   +       I R+I R +R +          + +  
Sbjct: 64  IEKFYATGKFP---GGFIKRES---KPSTEEVLISRLIDRPIRPLFPEGFF--NAVHVVI 115

Query: 117 DVIQADG--GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
           +V+  DG       A  G   AL                     G VA ++ G + G  I
Sbjct: 116 NVVSFDGINMPEDIATIGVSFAL-------------GLSDIPFSGPVAGVTVGYVNGEYI 162

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           ++ D  + + +D+  +   T S  I  V+  A     S++     + L  + I  + + Q
Sbjct: 163 INPDKEQRANMDIYLSVAGTKSA-ITMVEAGASE--VSEEEMLNAIMLGHEEIKKICE-Q 218

Query: 235 KDVISNEV 242
           ++ I N +
Sbjct: 219 QETILNSL 226


>gi|283954815|ref|ZP_06372331.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283793655|gb|EFC32408.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 713

 Score =  120 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 22/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
           R  GR  N++R IS+   +   A GSCL   G T  L  ATL  +    +      +N  
Sbjct: 355 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 414

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +      Y     S G     +A   R+ G       +  RAL   VD +      I + 
Sbjct: 415 NERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSVDEN--YPYVIRLV 468

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A + G  +AL               +  + + +  AI         + 
Sbjct: 469 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKHAI---------LT 519

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     +  G +  +Q   +     Q+     L  AK+    ++ + +
Sbjct: 520 DIMGLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 578

Query: 236 DV 237
           + 
Sbjct: 579 EA 580



 Score = 85.5 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 88/253 (34%), Gaps = 54/253 (21%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVK 75
           V+K A G+ L+K G + +L T   EEK            +T +Y     + G      VK
Sbjct: 38  VAKQATGAVLMKQGKSVVLATVAREEKQ----VEEDFLPLTVQYIEKTYAAGKIPGGYVK 93

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGA 133
           RE    +         R+I R+LR +         QI++   V+ AD     +  ++  A
Sbjct: 94  RET---KPSDAETLTARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPKVDLQVMSLNAA 148

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
            VAL+     M             K  V  +  G + G  I++ +  E     +D  +V 
Sbjct: 149 SVALYLSDIPM-------------KAPVCGVRIGRIDGNFILNPNNEELKNSTLDL-YVA 194

Query: 194 TDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKDRIA 228
                ++ ++  A     E   F                    ++D     LNLA+  I 
Sbjct: 195 GVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELNEDEILEALNLAQKAIL 254

Query: 229 DLIKLQKDVISNE 241
           +     K+  S  
Sbjct: 255 NGSNAYKEAFSKH 267


>gi|296810936|ref|XP_002845806.1| exosome complex exonuclease RRP41 [Arthroderma otae CBS 113480]
 gi|238843194|gb|EEQ32856.1| exosome complex exonuclease RRP41 [Arthroderma otae CBS 113480]
          Length = 298

 Score =  120 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 87/266 (32%), Gaps = 26/266 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWI 59
           +RL GR+ N++R +      +  + GS  +  G+T +L T     +             I
Sbjct: 14  LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTTVLCTVHGPAEGKRSETAGATGAVI 73

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGR--SQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
           +    +   +  +R K+ A  G  G R  + E+  +I  A +  +         I I   
Sbjct: 74  SVVVNLAGFANVDRKKKSAAGGGGGDRQATTELANLIRDAFQPHIHAHLYPRSTISIHVS 133

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS-----CGMLCGY 172
           V+ +DG    A +    +AL D    M        +    +    A++      G +   
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGRASTPAVTAESAQMGGVNET 193

Query: 173 --PIVDLDYGED----------STIDVDANFVMTDSGHIV---EVQGSA---ERATFSQD 214
             P++D+   E+          +    D N    D        E Q  +     +     
Sbjct: 194 LDPLLDISAPEEVELPYMTVANTNPMPDINIPKDDEDEYDAENENQMLSIVHMDSGVHVS 253

Query: 215 HFFAMLNLAKDRIADLIKLQKDVISN 240
           +   M  +  D      ++   V+  
Sbjct: 254 YLETMFAVGIDGCKQTREILNGVLKG 279


>gi|293335373|ref|NP_001168912.1| hypothetical protein LOC100382718 [Zea mays]
 gi|223973667|gb|ACN31021.1| unknown [Zea mays]
          Length = 209

 Score =  120 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 77/226 (34%), Gaps = 25/226 (11%)

Query: 16  LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           +    +  A GS   +FG T ++ +     +    +  +  G +         +T  R  
Sbjct: 1   MQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMMYSDVGRLNCNVSYTTFATPVRG- 59

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
                  QG  ++E   M+ +AL   V L       + +   V+++ G      I+ A +
Sbjct: 60  -------QGADNKEYSSMLHKALEGAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASL 112

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV-MT 194
           AL D    M D              V ++S        I+D    E++  D       M 
Sbjct: 113 ALADAGIMMYDL-------------VTSVSVSCFRKNIIIDPTSDEEAWQDGSLVVAFMP 159

Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
               I ++  + E   +S       + L  D  + L  + +D + +
Sbjct: 160 ARKEITQLTLTGE---WSDGRITNAVELCMDACSKLGDILRDRLKD 202


>gi|332376931|gb|AEE63605.1| unknown [Dendroctonus ponderosae]
          Length = 269

 Score =  120 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 18/163 (11%)

Query: 12  REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           R+I L   V   A+GS  ++ GDT ++ +     ++P  I     G +  E+   P S  
Sbjct: 47  RKIYLQTGVITQAKGSAYIEIGDTKVIVSVFDPREIPNRIDYGLKGEVYCEFKYAPFSCK 106

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
            R+  +     Q    ++   ++ +AL S V L  L + Q+ +   V++ DG   +AAI 
Sbjct: 107 KRMMHQ-----QNNEEKQSSDIMRKALESTVCLHELPNFQVDVYAMVLEEDGSALSAAII 161

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
              VAL      M D              + +++ G+  G  I
Sbjct: 162 AGGVALTLAGVPMYD-------------QITSVTLGVRNGALI 191


>gi|73666963|ref|YP_302979.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia canis str.
           Jake]
 gi|123615003|sp|Q3YSC4|PNP_EHRCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|72394104|gb|AAZ68381.1| 3 exoribonuclease:RNA binding S1:KH [Ehrlichia canis str. Jake]
          Length = 796

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 89/245 (36%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  +++R I +   V   A GS L   G+T  L    L           +   +  
Sbjct: 319 RIDGRAFDEIRNIEIEVDVLPKAHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P + G      A     G R     ++  RA+R V+   +     I +  +
Sbjct: 379 NFLLHYNFPPYAVGE----SAALRAPGRREIGHGKLAWRAIRYVLPEKSDFPYTIRVVSE 434

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + ++DG +  A + GA +AL D                 +K  VA I+ G++        
Sbjct: 435 ITESDGSSSMATVCGASLALMDTGV-------------PIKSPVAGIAMGLIKEGDKFII 481

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   + +  S D     L  AKD    ++  
Sbjct: 482 LSDILGDEDYLGDMDFKVAGTAEG-VTALQMDMKISGISVDVIEKALLQAKDGRMHILSK 540

Query: 234 QKDVI 238
              VI
Sbjct: 541 MNAVI 545



 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 67/176 (38%), Gaps = 16/176 (9%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
           +++ A G+ +V +  T +L T      +E V       +    +   G +P   G  +KR
Sbjct: 23  IARQANGAVMVSYAGTTVLATVVTGKTKEPVDFLPLTVQFVAKSYAVGKIP---GGFLKR 79

Query: 77  EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--RTAAITGAW 134
           E   G+   R   I R+I R++R +          I+  C+++  D  T     A+ GA 
Sbjct: 80  E---GKPSDRETLISRLIDRSIRPLFPSGFYDEVSIV--CNLLSYDTVTPPEVTALIGAT 134

Query: 135 VALHDCL---QHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AL         +        L    K  + A +  ML     + L   EDS + V
Sbjct: 135 AALSISGVSFNGLVAGVRIGYLPSEDKYLLNASADDMLYSSLDLFLSGNEDSVLMV 190


>gi|72382649|ref|YP_292004.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. NATL2A]
 gi|123620931|sp|Q46JM7|PNP_PROMT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|72002499|gb|AAZ58301.1| RNA binding S1:KH [Prochlorococcus marinus str. NATL2A]
          Length = 722

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 97/237 (40%), Gaps = 34/237 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           REI LT    +  A GS +++ GDT +L TA   +  E V        +       G +P
Sbjct: 13  REIKLTTGRFAPQAGGSVMIECGDTSVLVTATKSSGREGVDFLPLMCDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----ADG 123
              G+ ++RE   GR   R+  I R+I R +R +         QI+  C  +     AD 
Sbjct: 73  ---GSFMRRE---GRPPERATLISRLIDRPMRPLFPGWMRDDIQIVATCLSLDERVPAD- 125

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
                A+TGA +A                     +G +AA+  G+L    +++  Y E  
Sbjct: 126 ---VLAVTGASMATLMAGI-------------PFQGPMAAVRVGLLGDDFVLNPSYREIE 169

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             D+D     T  G +V V+  A +   S+      ++   + I +LI  QK+V+  
Sbjct: 170 RGDLDLVVAGTPDG-VVMVEAGANQ--LSEQDVIEAIDFGYEAITELINAQKEVLKE 223



 Score = 98.2 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 88/246 (35%), Gaps = 21/246 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIR-----NTK 55
           R+ GR+ N++R I     V      GS L + G T +L+TATL              NT 
Sbjct: 323 RVDGRELNEVRAIDADAAVLPNRVHGSALFQRGLTQVLSTATLGTPSDAQEMDDLNPNTD 382

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I   Y   P S G          R+ G       +  RAL  V+         + + 
Sbjct: 383 KTYIH-HYNFPPYSVGETRPMRTPGRREVGHG----ALAERALIPVLPAKDTFPYVLRVV 437

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            +V+ ++G T  A++ G+ +AL D    ++       +  + +G              + 
Sbjct: 438 SEVLSSNGSTSMASVCGSTLALMDAGVPLKAPVGGAAMGLIKEGKEV---------RILT 488

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T+ G I  +Q   +      +     +N A      ++    
Sbjct: 489 DIQGIEDFLGDMDFKVAGTEKG-ITALQMDMKITGLPIETIGEAINQALPARTHILGKML 547

Query: 236 DVISNE 241
           D I   
Sbjct: 548 DAIETP 553


>gi|124026371|ref|YP_001015487.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. NATL1A]
 gi|187610310|sp|A2C412|PNP_PROM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123961439|gb|ABM76222.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. NATL1A]
          Length = 722

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 97/237 (40%), Gaps = 34/237 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           REI LT    +  A GS +++ GDT +L TA   +  E V        +       G +P
Sbjct: 13  REIKLTTGRFAPQAGGSVMIECGDTSVLVTATKSSGREGVDFLPLMCDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----ADG 123
              G+ ++RE   GR   R+  I R+I R +R +         QI+  C  +     AD 
Sbjct: 73  ---GSFMRRE---GRPPERATLISRLIDRPMRPLFPGWMRDDIQIVATCLSLDERVPAD- 125

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
                A+TGA +A                     +G +AA+  G+L    +++  Y E  
Sbjct: 126 ---VLAVTGASMATLMAGI-------------PFQGPMAAVRVGLLGDDFVLNPSYREIE 169

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             D+D     T  G +V V+  A +   S+      ++   + I +LI  QK+V+  
Sbjct: 170 RGDLDLVVAGTPDG-VVMVEAGANQ--LSEQDVIEAIDFGYEAITELINAQKEVLKE 223



 Score = 99.0 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 88/246 (35%), Gaps = 21/246 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIR-----NTK 55
           R+ GR+ N++R I     V      GS L + G T +L+TATL              NT 
Sbjct: 323 RVDGRELNEVRAIEADAAVLPNRVHGSALFQRGLTQVLSTATLGTPSDAQEMDDLNPNTD 382

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I   Y   P S G          R+ G       +  RAL  V+         + + 
Sbjct: 383 KTYIH-HYNFPPYSVGETRPMRTPGRREVGHG----ALAERALIPVLPAKDTFPYVLRVV 437

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            +V+ ++G T  A++ G+ +AL D    ++       +  + +G              + 
Sbjct: 438 SEVLSSNGSTSMASVCGSTLALMDAGVPLKAPVGGAAMGLIKEGKEV---------RILT 488

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T+ G I  +Q   +      +     +N A      ++    
Sbjct: 489 DIQGIEDFLGDMDFKVAGTEKG-ITALQMDMKITGLPIETIGEAINQALPARTHILGKML 547

Query: 236 DVISNE 241
           D I   
Sbjct: 548 DAIETP 553


>gi|262277754|ref|ZP_06055547.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium
           HIMB114]
 gi|262224857|gb|EEY75316.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium
           HIMB114]
          Length = 692

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 90/247 (36%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPMW--IRNTKHG 57
           R+ GR+ +++R+I     +   A GS L   G+T  +  ATL   +    +  +   +  
Sbjct: 313 RIDGRKLDEVRDILCEVGIIPRAHGSSLFTRGETQAIVAATLGTSDDEQRFESLEGMQKS 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      ++  RA+ + +         I I  D
Sbjct: 373 RFMLHYNFPPFSVGEVGRVGGTGRREIGHG----KLAWRAINAALPKHEDFPYTIRIVSD 428

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A + G+ +AL      +E               +A I+ G++        
Sbjct: 429 ITESNGSSSMATVCGSSMALMHAGVPIEK-------------PIAGIAMGLIKEGNEFSV 475

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    + +     L  AK    D++  
Sbjct: 476 LSDILGDEDHLGDMDFKVAGSADG-ITSLQMDIKINGITFEIMEKALEQAKKGRLDILNE 534

Query: 234 QKDVISN 240
               I  
Sbjct: 535 MAKAIKE 541



 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 84/234 (35%), Gaps = 38/234 (16%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
            +S+    +++ A+G+ ++++GDT +++TA            +     +       G +P
Sbjct: 15  NLSIETGKIARQADGAVILRWGDTVIISTAVASKKTNPDTDFFPLTVNYQEKFYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KREA   R       I R+I R +R +         Q++        +     
Sbjct: 75  ---GGYFKREA---RPTESETLISRLIDRPIRPLFPDQFRNETQVLTTVLSYDKECDPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG------- 180
            A+  +  AL                    +G VAA   G++ G  I++           
Sbjct: 129 LAVIASSAALS-------------ISGLPFQGPVAASKVGLIDGKFILNPSKESIKSSNL 175

Query: 181 EDSTIDVDANFVM--TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           E          +M  +++  + E Q   +   F  ++F  ++NL    I +L K
Sbjct: 176 ELVVAGTKEAVLMVESEASGLTEAQML-DAVKFGHENFLPVINL----IEELAK 224


>gi|237745432|ref|ZP_04575912.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
           HOxBLS]
 gi|229376783|gb|EEO26874.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
           HOxBLS]
          Length = 707

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 95/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I++   V     GS L   G+T  L  ATL         +   G    
Sbjct: 320 RIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTSRDNQKIDALMGEYSD 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +      R+ G      R+  RAL + +      S  I +  +
Sbjct: 380 AFMMHYNMPPFATGETGRVGTPKRREIGHG----RLAKRALVACLPSQDEFSYSIRLVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           +++++G +  A++ G  +AL D                 +K HVA I+ G++        
Sbjct: 436 IMESNGSSSMASVCGGSLALMDAGV-------------PVKTHVAGIAMGLIKEGNKFAV 482

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     L  A++    ++  
Sbjct: 483 LTDILGDEDHLGDMDFKVAGTSTG-VTALQMDIKIQGITKEIMQVALAQAREGRMHILGK 541

Query: 234 QKDVISN 240
            ++ +  
Sbjct: 542 MQEAMPQ 548



 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 81/232 (34%), Gaps = 27/232 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ +V   DT +L T   ++ V      +     +   +   G +P 
Sbjct: 16  VTLETGEIARQASGAVVVSMDDTVVLATVVAKDDVKPGQDFFPLTVDYIEKSYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  KRE   GR   +     R+I R +R +         Q+II    +  +      
Sbjct: 75  --GSFFKRE---GRPSEKETLTSRLIDRPIRPLFPDGYFNEVQVIIHVLSVNPEIDPDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++  A  AL                     G + A   G + G  +++    +     +D
Sbjct: 130 SMIAASAALCVSGI-------------PFNGPLGAARVGYIDGQYVLNPTASQLPLSQLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                T+   ++     +E     +D     +    +++  +I    +++S 
Sbjct: 177 LVVAGTEQAVLMV---ESEAKELPEDVMLGAVVFGHEQMKVVIDAIDELVSE 225


>gi|296087634|emb|CBI34890.3| unnamed protein product [Vitis vinifera]
          Length = 905

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 86/240 (35%), Gaps = 11/240 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           +R+ GR  N++R +           GS L   GDT +L T TL         ++  G   
Sbjct: 317 LRVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPGDAQRLDSLVGPPT 376

Query: 58  -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S     KR  ++ R+ G       +  +AL +V+         + I+ 
Sbjct: 377 KRFMLHYSFPPFSINEVGKRVGLNRREVGHGT----LAEKALLAVLPPEEEFPYTVRINS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ +DG T  A + G  +AL D    + +      +   L   V   +  +     + D
Sbjct: 433 EVMASDGSTSMATVCGGSMALMDAGIPLREHVAGISVG--LVTEVDPSTNTIKDYRILTD 490

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I  +Q   + A    D     L  A      ++   + 
Sbjct: 491 ILGLEDHLGDMDFKIAGTRKG-ITAIQLDIKPAGIPLDIICECLEPALRGRLQILDRMEQ 549



 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 75/221 (33%), Gaps = 34/221 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R I+     ++++A G+ ++   +T +L+T                  +T +Y     + 
Sbjct: 16  RSITFETGKIARFANGAVVMSMDETKVLSTV----ASSKGDAARDFLPLTVDYQEKHFAQ 71

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--G 124
           G      ++RE        R     R+I R +R +         Q++    V+ +DG   
Sbjct: 72  GVIPTTFMRREGAPR---ERELLCGRLIDRPIRPLFPAGFYHEVQVMAS--VLSSDGKQD 126

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A      AL                     G +  I  G +CG  IV+    E S 
Sbjct: 127 PDVMAANATSAAL-------------MLSDIPWGGPIGVIRIGRICGQFIVNPSMDELSL 173

Query: 185 IDVDANFVMTDSGHI-VEVQGSAERATFSQDHFFAMLNLAK 224
            D++  +  T    + ++VQ        S+    A L LA 
Sbjct: 174 SDLNLVYACTRDKTLMIDVQA----REISEKDLEAALRLAH 210


>gi|160872287|ref|ZP_02062419.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Rickettsiella
           grylli]
 gi|159121086|gb|EDP46424.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Rickettsiella
           grylli]
          Length = 712

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR +  +R I++         GS L   G+T  L   TL           +      
Sbjct: 325 RIDGRDKKAVRPITIEPGFLPRTHGSALFTRGETQALVVTTLGTDRDAQTVEALDGEGRE 384

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RALR+V+   +     + +  +
Sbjct: 385 TFMLHYNFPPYSVGETGQIGSPKRREIGHG----NLAKRALRAVLPSESDFPYVLRVVSE 440

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A + GA VAL D                 LK HVA I+ G++  G     
Sbjct: 441 ITESNGSSSMATVCGASVALMDAGV-------------PLKKHVAGIAMGLIKEGEQFAV 487

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    +++     LN A++    ++ +
Sbjct: 488 LTDILGDEDHLGDMDFKVAGTVDG-VTALQMDIKIEGITEEILKVALNQAREGRLHILSI 546

Query: 234 QKDVISNE 241
            K+ ++  
Sbjct: 547 MKEALAEP 554



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 57/167 (34%), Gaps = 21/167 (12%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR   +     R+I R +R +         Q++        D      A+
Sbjct: 84  GGYFKRE---GRPSEKEILTSRLIDRPIRPLFPEGFYNEVQVVATVLSSTPDINPDIPAL 140

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  AL                    K  +AA+  G   G  I++    E  T D+D  
Sbjct: 141 IGASAALALSGL-------------PFKEPIAAVRVGYADGQYILNPSMKELETSDLDLV 187

Query: 191 FVMTDSGHI-VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              T+   + VE Q     A  S++     +     ++  +I+  K+
Sbjct: 188 VAATEKAVLMVESQA----AELSEEIMLKAILFGHQQMQGVIQSIKE 230


>gi|67526709|ref|XP_661416.1| hypothetical protein AN3812.2 [Aspergillus nidulans FGSC A4]
 gi|40740830|gb|EAA60020.1| hypothetical protein AN3812.2 [Aspergillus nidulans FGSC A4]
 gi|259481631|tpe|CBF75330.1| TPA: exosome complex endonuclease 1/ribosomal RNA processing
           protein, putative (AFU_orthologue; AFUA_2G03740)
           [Aspergillus nidulans FGSC A4]
          Length = 265

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 87/253 (34%), Gaps = 18/253 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTK 55
           +RL GR+ N++R +      +  + GS  +  G+T +L +     +            + 
Sbjct: 14  LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTTILCSVHGPAEGRRGDATGGSAGSS 73

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
              +  +  +   ++ +R +R   S RQ GR   I   +  A +S +         I I 
Sbjct: 74  GAVVEVDVNIAGFASVDRKRRAGGSDRQSGR---IASTLRSAFQSHLHTYLYPHSTISIH 130

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPI 174
             V+ +DG    AA+    +AL D    M            + G  +     M     P+
Sbjct: 131 VSVLSSDGSVLAAAVNACTLALVDAGIPMPGLLCGCTAG--MSGSASTPRDPMNDTLDPL 188

Query: 175 VDLDYGEDS------TIDVDANFVMTDSGHIVE-VQGSAERATFSQDHFFAMLNLAKDRI 227
           +D+   E+            A  VMTD       V      +     +   ML +  D  
Sbjct: 189 LDVSLPEEQELPFLTVATTSAPAVMTDGDEDDMKVSMLTMDSKVHYSYIETMLAVGVDGC 248

Query: 228 ADLIKLQKDVISN 240
             + ++   VI  
Sbjct: 249 KQVREILDSVIKG 261


>gi|269302800|gb|ACZ32900.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae
           LPCoLN]
          Length = 694

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMW--IRNTKH 56
           +R  GR    +R I++         GSCL   G+T  L   TL  E     +  +     
Sbjct: 314 IRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSEAMAQRYEDLNGEGL 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +     G  G R     ++  +AL   +  SA     I I+ 
Sbjct: 374 SKFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHALPDSATFPYTIRIES 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ G  +AL D                 +   +A I+ G++    G  
Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGV-------------PISSPIAGIAMGLILDDQGAI 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           I+ D+   ED   D+D     +  G I   Q   +    +       L+ AK    D++ 
Sbjct: 477 ILSDISGLEDHLGDMDFKIAGSGKG-ITAFQMDIKVEGITPAIMKKALSQAKQGCNDILN 535

Query: 233 LQKDVIS 239
           +  + +S
Sbjct: 536 IMNEALS 542



 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 78/221 (35%), Gaps = 26/221 (11%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
                +++ A G+ LV+ G+T +        L++KV        +     ++    ++ G
Sbjct: 18  FETGKIARQANGAVLVRSGETCVFASACAVDLDDKVDFLPLRVDYQE---KFSSTGKTLG 74

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
             +KRE   GR   +   + R+I R+LR       +   Q++        DG        
Sbjct: 75  GFIKRE---GRPSEKEILVSRLIDRSLRPSFPYRLMQDVQVLSYVW--SYDGQV------ 123

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
                L D L      +            VA +  G +    +++    E ++  +D   
Sbjct: 124 -----LPDPLAICAASAALAISDIPQSNIVAGVRIGCIDNQWVINPTKTELASSTLDLVL 178

Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
             T++  I+ ++G      F+++     +      I  + K
Sbjct: 179 AGTENA-ILMIEG--HCDFFTEEQVLDAIEFGHKHIVTICK 216


>gi|47847669|dbj|BAD21450.1| putative polyribonucleotide nucleotidyltransferase [Oryza sativa
           Japonica Group]
          Length = 982

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 94/245 (38%), Gaps = 13/245 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           +R+ GRQ +++R +           GS L   GDT +L T TL         ++  G   
Sbjct: 378 LRVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPT 437

Query: 58  -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S     KR  ++ R+ G       +  +AL +V+         + ++ 
Sbjct: 438 KRFMLHYSFPPFSINEVAKRGGLNRREVGHGT----LAEKALLAVLPPEGEFPYTVRVNS 493

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175
           +V+ +DG T  A++ G  +AL D    + +      +  V +      + G +  Y I+ 
Sbjct: 494 EVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSE---VDQTTGDISSYRILT 550

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T  G I  +Q   + A    D     L  A+     ++    
Sbjct: 551 DILGLEDHLGDMDFKIAGTRRG-ITAIQLDIKPAGIPLDIICESLEPARKARNQILDRMD 609

Query: 236 DVISN 240
             IS+
Sbjct: 610 QEISS 614



 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 77/238 (32%), Gaps = 41/238 (17%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLP 67
           R IS       ++A GS ++   DTH+L     A   E V  ++       +T +Y    
Sbjct: 70  RVISFETGKMARFANGSVVISMDDTHVLSTVAAAKSSEPVRDFLP------LTVDYQEKQ 123

Query: 68  RSTG----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI----IIDCDVI 119
            + G      ++RE   G    R     R+I R +R +         Q+    II  +VI
Sbjct: 124 YAQGVIPTTYMRRE---GAPKERELLCGRIIDRPIRPLFPPGFYHEVQVMNATIIMVNVI 180

Query: 120 QADG--GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
            +DG       A   +  AL                     G +  I  G + G  +++ 
Sbjct: 181 SSDGKQDPDVMAANASSAAL-------------MLSDIPWNGPIGVIRVGRIDGNFVLNP 227

Query: 178 DYGEDSTIDVDANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
              E      D N V        + +   A     ++    A + LA       I  Q
Sbjct: 228 TVDE--LGLSDLNLVYACSRDKTLMIDVQARE--ITERDLQAGMKLAHAEAVKCINPQ 281


>gi|68171419|ref|ZP_00544810.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|67999161|gb|EAM85820.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ehrlichia chaffeensis
           str. Sapulpa]
          Length = 554

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 89/245 (36%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  +++R+I +   V   A GS L   G+T  L    L           +   +  
Sbjct: 77  RIDGRAFDEIRDIEIEVDVLPKAHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 136

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P + G      A     G R     ++  RA+R V+   +     I +  +
Sbjct: 137 NFLLHYNFPPYAVGE----SAALRAPGRREIGHGKLAWRAIRYVLPEKSDFPYTIRVVSE 192

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + ++DG +  A + GA +AL D                 +K  VA I+ G++        
Sbjct: 193 ITESDGSSSMATVCGASLALMDTGV-------------PIKSPVAGIAMGLIKEDDRFII 239

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   + +    D     L  AKD    ++  
Sbjct: 240 LSDILGDEDHLGDMDFKVAGTAEG-VTALQMDMKISGIDIDIIEKALLQAKDGRMHILSK 298

Query: 234 QKDVI 238
              VI
Sbjct: 299 MNAVI 303


>gi|33242368|ref|NP_877309.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila
           pneumoniae TW-183]
 gi|33236879|gb|AAP98966.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae
           TW-183]
          Length = 694

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMW--IRNTKH 56
           +R  GR    +R I++         GSCL   G+T  L   TL  E     +  +     
Sbjct: 314 IRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSEAMAQRYEDLNGEGL 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +     G  G R     ++  +AL   +  SA     I I+ 
Sbjct: 374 SKFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHALPDSATFPYTIRIES 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ G  +AL D                 +   +A I+ G++    G  
Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGV-------------PISSPIAGIAMGLILDDQGAI 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           I+ D+   ED   D+D     +  G I   Q   +    +       L+ AK    D++ 
Sbjct: 477 ILSDISGLEDHLGDMDFKIAGSGKG-ITAFQMDIKVEGITPAIMKKALSQAKQGCNDILN 535

Query: 233 LQKDVIS 239
           +  + +S
Sbjct: 536 IMNEALS 542



 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 78/221 (35%), Gaps = 26/221 (11%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
                +++ A G+ LV+ G+T +        L++KV        +     ++    ++ G
Sbjct: 18  FETGKIARQANGAVLVRSGETCVFASACAVDLDDKVDFLPLRVDYQE---KFSSTGKTLG 74

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
             +KRE   GR   +   + R+I R+LR       +   Q++        DG        
Sbjct: 75  GFIKRE---GRPSEKEILVSRLIDRSLRPSFPYRLMQDVQVLSYVW--SYDGQV------ 123

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
                L D L      +            VA +  G +    +++    E ++  +D   
Sbjct: 124 -----LPDPLAICAASAALAISDIPQSNIVAGVRIGCIDNQWVINPTKTELASSTLDLVL 178

Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
             T++  I+ ++G      F+++     +      I  + K
Sbjct: 179 AGTENA-ILMIEG--HCDFFTEEQVLDAIEFGHKHIVTICK 216


>gi|15618907|ref|NP_225193.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila
           pneumoniae CWL029]
 gi|15836530|ref|NP_301054.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila
           pneumoniae J138]
 gi|16752027|ref|NP_445393.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila
           pneumoniae AR39]
 gi|81789835|sp|Q9Z6R0|PNP_CHLPN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|4377328|gb|AAD19136.1| Polyribonucleotide Nucleotidyltransferase [Chlamydophila pneumoniae
           CWL029]
 gi|7189766|gb|AAF38644.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae
           AR39]
 gi|8979372|dbj|BAA99206.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae
           J138]
          Length = 694

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMW--IRNTKH 56
           +R  GR    +R I++         GSCL   G+T  L   TL  E     +  +     
Sbjct: 314 IRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSEAMAQRYEDLNGEGL 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +     G  G R     ++  +AL   +  SA     I I+ 
Sbjct: 374 SKFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHALPDSATFPYTIRIES 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ G  +AL D                 +   +A I+ G++    G  
Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGV-------------PISSPIAGIAMGLILDDQGAI 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           I+ D+   ED   D+D     +  G I   Q   +    +       L+ AK    D++ 
Sbjct: 477 ILSDISGLEDHLGDMDFKIAGSGKG-ITAFQMDIKVEGITPAIMKKALSQAKQGCNDILN 535

Query: 233 LQKDVIS 239
           +  + +S
Sbjct: 536 IMNEALS 542



 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 78/221 (35%), Gaps = 26/221 (11%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
                +++ A G+ LV+ G+T +        L++KV        +     ++    ++ G
Sbjct: 18  FETGKIARQANGAVLVRSGETCVFASACAVDLDDKVDFLPLRVDYQE---KFSSTGKTLG 74

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
             +KRE   GR   +   + R+I R+LR       +   Q++        DG        
Sbjct: 75  GFIKRE---GRPSEKEILVSRLIDRSLRPSFPYRLMQDVQVLSYVW--SYDGQV------ 123

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
                L D L      +            VA +  G +    +++    E ++  +D   
Sbjct: 124 -----LPDPLAICAASAALAISDIPQSNIVAGVRIGCIDNQWVINPTKTELASSTLDLVL 178

Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
             T++  I+ ++G      F+++     +      I  + K
Sbjct: 179 AGTENA-ILMIEG--HCDFFTEEQVLDAIEFGHKHIVTICK 216


>gi|325290354|ref|YP_004266535.1| Polyribonucleotide nucleotidyltransferase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965755|gb|ADY56534.1| Polyribonucleotide nucleotidyltransferase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 713

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 96/249 (38%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR  +++R I++         GS +   G T ++T ATL    +E++   +   + 
Sbjct: 322 IRPDGRALDEIRPITVEVAALPRTHGSAVFTRGQTQVMTVATLGAVSDEQIIDGLGLEES 381

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      A   R+ G       +  RAL  ++   A     + +  
Sbjct: 382 KRYMHHYNFPPFSVGEVRPMRAPGRREIGHG----NLAERALIPMIPGEAEFPYTLRLVS 437

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G +  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 438 EVLESNGSSSMASVCGSTLALMDAGV-------------PIKAPVAGIAMGLIQEESQYA 484

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK+    ++ 
Sbjct: 485 ILSDIQGLEDHDGDMDFKVAGTAKG-VTALQMDIKIKGVSREILAQALKQAKEGRMFILD 543

Query: 233 LQKDVISNE 241
               VI   
Sbjct: 544 KMLAVIGEP 552



 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 83/226 (36%), Gaps = 27/226 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHL--LTTAT--LEEKVPMWIRNTKHGWITAEYGML 66
           R +S       + A G+  +K+GDT +    TA+    E +  +    +        G +
Sbjct: 15  RTMSFETGRIGRQAGGAIFLKYGDTVVSAFATASSKPREGIDFFPLTCEFEERLYAAGKI 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   ++    R+I R +R +         Q++     +  D  T 
Sbjct: 75  P---GGFIKRE---GRPSEKATLTARLIDRPIRPLFPEGYQNDVQVVTMVMSVDQDCPTD 128

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            +AI  A  AL                +   +G +A +  G++ G  +++    + +   
Sbjct: 129 VSAINAASAAL-------------TISNIPFEGPIAGVIVGLVDGQFVINPTVDQAARSQ 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    IV V+  A     S++     +  A + I  + +
Sbjct: 176 MYLTVAGTKDA-IVMVEAGANE--ISEEQMLDAMIFAHEEIKKIAE 218


>gi|206895816|ref|YP_002247081.1| polyribonucleotide nucleotidyltransferase [Coprothermobacter
           proteolyticus DSM 5265]
 gi|257096676|sp|B5Y8I4|PNP_COPPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|206738433|gb|ACI17511.1| polyribonucleotide nucleotidyltransferase [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 697

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  +++R +     V     GS L   G T +L+T TL     +     I   +  
Sbjct: 316 RVDGRAFDEIRPLYAESSVLPKVHGSGLFIRGQTQVLSTVTLGSFSDVQFIDAIGLEEFK 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
               +Y   P STG    R   S R+ G       ++ RAL  ++    +    I +  +
Sbjct: 376 RFMHQYDFPPFSTGEVKPRRGPSRREIGHG----ALVERALSYLIPSEEVFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V++++G T  A+   + +AL      M        +  +                 + D+
Sbjct: 432 VLESNGSTSMASTCASSIALMSAGVPMARHVGGIAMGLIEYND---------ENVVLTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   +    S +     ++ A+   + ++ +  D 
Sbjct: 483 QGLEDHLGDMDFKVAGTREG-ITALQLDVKVKGISVETLDKAIDQAEVARSKILDVLYDA 541

Query: 238 ISNE 241
           I + 
Sbjct: 542 IPSP 545



 Score = 75.5 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 82/235 (34%), Gaps = 28/235 (11%)

Query: 13  EISLTRRVSK-YAEGSCLVKFGDTHLLTTA--TLEEK--VPMWIRNTKHGWITAEYGMLP 67
           ++          A G+ L +FGDT  L+T   + E K  +  +     +   +   G +P
Sbjct: 17  KVIFQSGFLALQANGAVLARFGDTVALSTVLMSSEPKLDIDFFPLTVDYEEKSYAVGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   K+E   GR         R+I R++R +         Q++        +     
Sbjct: 77  ---GGFFKKE---GRPTDMEILKARLIDRSIRPMFPDGMRNEVQVLNMILAADMENPPDI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ G   AL                   +   +A +  G + G  +++  + E S   +
Sbjct: 131 VALNGTAAALA-------------VSDIPIPELIAGVRVGYIDGEYVLNPTFAEMSESQL 177

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           D     T    IV ++  A  A   +      L  A++ I  +I L  + +  +V
Sbjct: 178 DLVVAGTRD-SIVMIEAGA--AEVDKSILIGGLKFAQEGIRQIIDLIAE-LKEKV 228


>gi|52080276|ref|YP_079067.1| polynucleotide phosphorylase/polyadenylase [Bacillus licheniformis
           ATCC 14580]
 gi|52785653|ref|YP_091482.1| polynucleotide phosphorylase/polyadenylase [Bacillus licheniformis
           ATCC 14580]
 gi|319645944|ref|ZP_08000174.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. BT1B_CT2]
 gi|81385548|sp|Q65JH5|PNP_BACLD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|52003487|gb|AAU23429.1| polynucleotide phosphorylase (PNPase) [Bacillus licheniformis ATCC
           14580]
 gi|52348155|gb|AAU40789.1| PnpA [Bacillus licheniformis ATCC 14580]
 gi|317391694|gb|EFV72491.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. BT1B_CT2]
          Length = 705

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 88/248 (35%), Gaps = 26/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR  +++R +S    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 VRPDGRAVDEIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G            G R      +  RAL  +V         I +  
Sbjct: 375 KRFMHHYNFPQFSVGE----TGPMRGPGRREIGHGALGERALEPIVPSEKDFPYTIRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKSGDNYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK    ++++
Sbjct: 478 VLTDIQGMEDHLGDMDFKVAGTSKG-VTALQMDIKIEGLSREILEEALQQAKKGRMEILE 536

Query: 233 LQKDVISN 240
                ++ 
Sbjct: 537 SMLSTLAE 544



 Score = 89.0 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 94/232 (40%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ +V++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RKLTVETGQLAKQANGAVMVRYGDTAVLSTATASKEPKTVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G +    I++    +    D+
Sbjct: 129 AAMFGSSLALC-------------VSDIPFEGPIAGVTVGRVDNKFIINPTLEQLEKSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                 T    I  V+  A+     ++     +    + I  LI  Q+++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADEVP--EEIMLEAIMFGHEEIKRLIAFQEEIVA 224


>gi|269792330|ref|YP_003317234.1| Polyribonucleotide nucleotidyltransferase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099965|gb|ACZ18952.1| Polyribonucleotide nucleotidyltransferase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 752

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 92/260 (35%), Gaps = 48/260 (18%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT---------------LEEK 46
           R  GR  +Q+R I+    V     GS L   G+T  L   T               ++E 
Sbjct: 312 RADGRAMDQLRPITCEVGVLPKVHGSALFTRGETQALAVTTLGMMGEDDQILDGLKIDEP 371

Query: 47  VPMWIRNTKHGWITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105
              ++           Y   P S G  R  R       G R      +  RALR ++   
Sbjct: 372 AKRFL---------LHYNFPPYSVGEVRPMRG-----PGRREIGHGALAERALRPMLPSE 417

Query: 106 ALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS 165
                 + +  D+++++G +  A++ G  +++ D                 +K  VA ++
Sbjct: 418 DQFPYVVRVVSDILESNGSSSMASVCGGSLSMMDAGV-------------PIKKAVAGVA 464

Query: 166 CGMLCG----YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
            G++        + D+   ED   D+D     T  G +  +Q   +    +++     L+
Sbjct: 465 MGLVTDGSRVCILTDIQGLEDHYGDMDFKVAGTRDG-VTALQMDNKAGGITREILKRALD 523

Query: 222 LAKDRIADLIKLQKDVISNE 241
            A+D    ++ +    I + 
Sbjct: 524 QARDGRMRILDIMDGAIRSP 543



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 78/230 (33%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R +S       K A G+    +G+T +L T+       E +  +     +       G +
Sbjct: 12  RVLSFETGRMAKQANGAVYASYGETAVLVTSVMSEKPREGLDFFPLLVDYEERFYSAGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR    +    RM+ R++RS+          + +   V+  D    
Sbjct: 72  P---GGFIKRE---GRPSETAILSGRMVDRSIRSLFPEHM--RNDVHVVATVLSVD---- 119

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                       + L      +          G + A+  G + G  +V+    + +   
Sbjct: 120 -------QHNPPNVLAINAASAALAISDIPWDGPIGAVRIGCIDGQLLVNPTEPQMAEST 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D   V    G I  V+  A     S+D     + LA   I  ++   +D
Sbjct: 173 LDL-LVAGHDGGITMVEAGANE--VSEDLLVDAMELAHQEIRRIVAFIRD 219


>gi|319941417|ref|ZP_08015745.1| polyribonucleotide nucleotidyltransferase [Sutterella
           wadsworthensis 3_1_45B]
 gi|319805037|gb|EFW01867.1| polyribonucleotide nucleotidyltransferase [Sutterella
           wadsworthensis 3_1_45B]
          Length = 707

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 98/244 (40%), Gaps = 26/244 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           R+ GR    +R I + + V     GS L   G+T  L T TL  K    I +     +H 
Sbjct: 322 RIDGRDTRTVRPIEIRQGVLPRTHGSALFTRGETQALVTTTLGTKQDEQIIDGLCEEQHD 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL++V+         + +  +
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALKAVLPSPEEFQYTLRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +++ D                 LK +VA ++ G++        
Sbjct: 438 ICESNGSSSMASVCGGCLSMLDAGV-------------PLKDYVAGVAMGLIKEGNRFAV 484

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G +  +Q   +    + +   A L  A D    ++  
Sbjct: 485 LTDILGDEDHLGDMDFKVAGTENG-VTALQMDIKIEGITPEIMQAALAQAHDGRQHILSR 543

Query: 234 QKDV 237
             ++
Sbjct: 544 MHEM 547



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 81/234 (34%), Gaps = 38/234 (16%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
           +++L    +++ A G+ + +  DT +L T   +++       +     +   T   G +P
Sbjct: 17  DVTLETGEIARQATGAVICRMDDTVVLATVVCKKEAKPGQDFFPLTVDYIEKTYAAGRIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
              G   KRE   GR   +     R+I R +R +         Q+II   V+ AD     
Sbjct: 77  ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPDGFFNEVQVII--HVLSADPAVDP 128

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              A+ GA  AL                    +G + A   G +    +V+    +  T 
Sbjct: 129 DIPAMLGASAALAVSGI-------------PFRGPIGACRVGYIDDKFVVNPTTEQLKTS 175

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232
            +D     T    ++     +E     +             + +A + I +L+ 
Sbjct: 176 RLDLVVAGTQRAVLMV---ESEADILPEKTMLDAVVFGHREMQVAINAINELVA 226


>gi|325971218|ref|YP_004247409.1| polyribonucleotide nucleotidyltransferase [Spirochaeta sp. Buddy]
 gi|324026456|gb|ADY13215.1| Polyribonucleotide nucleotidyltransferase [Spirochaeta sp. Buddy]
          Length = 702

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 91/251 (36%), Gaps = 31/251 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-----TATLEEKVPMWIRNTKH 56
           R  GR  +Q+R I+    +     GS L   G+T  L      TA+ E+           
Sbjct: 316 RTDGRSVDQIRPITCEVGLLDRTHGSALFTRGETQALAVTTLGTASDEQMFDTIDGEKSF 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G    R +   R+ G       +  RAL ++V         + +  
Sbjct: 376 SSFMLHYNFPPYSVGE-CGRLSTGRREIGHGH----LAQRALEAIVPNKESFPYTVRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171
           ++++++G +  A++ G  ++L D                 +K  VA I+ G++       
Sbjct: 431 EIMESNGSSSMASVCGGCLSLMDAGV-------------PIKKPVAGIAMGLITEGADYS 477

Query: 172 --YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED   D+D     +  G I   Q   + A  + +     L  AK     
Sbjct: 478 KYVVLSDILGEEDHLGDMDFKVAGSRDG-ITAFQMDIKIAGVTPEIMKKALEQAKQGRMH 536

Query: 230 LIKLQKDVISN 240
           ++ + +  +SN
Sbjct: 537 ILSIMEGALSN 547



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 79/217 (36%), Gaps = 26/217 (11%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V  + EGS ++      +       E +     + ++       G +P   G  +KREA 
Sbjct: 30  VYAHYEGSAVIAT----VCCGKEPNEALDYVPLSVEYNEKYYAAGKIP---GGFLKREA- 81

Query: 80  SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD 139
             R   +   + R+I R +R + D  A G R+I +   V+ +D                D
Sbjct: 82  --RPKDKEILVSRLIDRPMRPLFD-KAFG-REIQVVPTVVSSDMNN-----------TPD 126

Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHI 199
            +      +          G +AA+   M+ G  +V+  + +     +D     T  G I
Sbjct: 127 IIAINAASAAVTISDIPFNGPIAAVRISMVDGAYVVNPTFSQIERSSLDIVVAGTRDG-I 185

Query: 200 VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             V+G A+    S++     +  A+  I  L   Q +
Sbjct: 186 TMVEGGAKE--VSEEVMLEAIATAQPYITKLCDAQLE 220


>gi|121612552|ref|YP_001000929.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|167005840|ref|ZP_02271598.1| polynucleotide phosphorylase/polyadenylase [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|187610251|sp|A1W0N8|PNP_CAMJJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|87249933|gb|EAQ72892.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni 81-176]
          Length = 719

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 88/242 (36%), Gaps = 22/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
           R  GR  N++R IS+   +   A GSCL   G T  L  ATL  +    +      +N  
Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G     +A   R+ G       +  RAL   VD +      I + 
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSVDEN--YPYIIRLV 449

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A + G  +AL               +  + + +  A+         + 
Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKHAV---------LT 500

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     +  G +  +Q   +     Q+     L  AK+    ++ + +
Sbjct: 501 DIMGLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 559

Query: 236 DV 237
           + 
Sbjct: 560 EA 561



 Score = 85.9 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 86/242 (35%), Gaps = 60/242 (24%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72
           V+K A G+ L++ G + +L T   EEK            +T +Y       G +P   G 
Sbjct: 19  VAKQAAGAVLMRQGKSIVLATVAREEKQ----VEEDFLPLTVQYIEKAYAAGKIP---GG 71

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            VKRE    +         R+I R+LR +         QI++   V+ AD     +  ++
Sbjct: 72  YVKRET---KPSDAETLTARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPKVDLQVMSL 126

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
             A VAL+     M             K  V  +  G + G  I++ +  E     +D  
Sbjct: 127 NAASVALYLSDIPM-------------KAPVCGVRIGKIDGNFILNPNNEELQNSTLDL- 172

Query: 191 FVMTDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKD 225
           +V      ++ ++  A     E   F                    S+D     LNLA+ 
Sbjct: 173 YVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQK 232

Query: 226 RI 227
            I
Sbjct: 233 AI 234


>gi|313159231|gb|EFR58601.1| polyribonucleotide nucleotidyltransferase [Alistipes sp. HGB5]
          Length = 744

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 93/245 (37%), Gaps = 16/245 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +RL GR+ +++R I         A GS +   G+T  LT+ T    L+EK    +     
Sbjct: 323 LRLDGRKTDEIRPIWCEVDYLPAAHGSAIFTRGETQSLTSVTLGTKLDEKQKDEVLVQGT 382

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG       +S R+ G       +  RAL+ +V L       + +  
Sbjct: 383 EQFVLHYNFPPFSTGEAKAARGLSRREIGHGH----LAWRALKPMVPLGEENPYAVRVVS 438

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           D+++++G +  A +    +AL D    ++   +   +     G ++    G      + D
Sbjct: 439 DILESNGSSSMATVCAGTLALMDAGVKLKKPVSGIAM-----GLISDSQSGKWA--VLSD 491

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I   Q   +    S +   A L  A+     ++    +
Sbjct: 492 ILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEVLAAALEQARKGRLHILGKLTE 550

Query: 237 VISNE 241
            I+  
Sbjct: 551 CIAEP 555



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 90/236 (38%), Gaps = 28/236 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R+I +      K A+GS +VK GDT LL T       +          ++    A  G  
Sbjct: 20  RQIEIETGKLAKQADGSVVVKQGDTMLLATVVAAKDAKPDTDFMPLQVEYKEKYASCGRY 79

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR       + R+I RALR +         ++ +  ++I AD   +
Sbjct: 80  P---GGFMKRE---GRANDSEILVARLIDRALRPLFPAD--YHAEVYVTVNLISADKDIQ 131

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                       D L  +   +          G ++ +    L G  +++  + E   +D
Sbjct: 132 -----------PDALAGLAASAALAVSDIPFGGPISEVRVARLDGEYVINPKFSEMDRVD 180

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           +D   V     +I+ V+G  E    S++     +  A + I     +Q + +S E+
Sbjct: 181 LDI-MVGGTIDNILMVEG--EMKEVSEEVMLGAIKFAHEEIKKHCAVQIE-LSKEL 232


>gi|258543760|ref|ZP_05703994.1| polyribonucleotide nucleotidyltransferase [Cardiobacterium hominis
           ATCC 15826]
 gi|258520996|gb|EEV89855.1| polyribonucleotide nucleotidyltransferase [Cardiobacterium hominis
           ATCC 15826]
          Length = 693

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 93/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I++   V     GS L   G+T  L  ATL       I +   G    
Sbjct: 312 RIDGRDTVTVRPITIRTGVLPRVHGSALFTRGETQALVVATLGTGRDAQIIDALTGEYRD 371

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      R+  R + +++   +     I +  +
Sbjct: 372 IFMLHYNFPPFSVGETGRVGSPKRREIGHG----RLARRGVTAILPPESTFPYTIRVVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 428 ITESNGSSSMASVCGTSLALMDAGV-------------PVKTPVAGIAMGLVKEGERFTV 474

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G +  +Q   +    +++     L  AK     ++++
Sbjct: 475 LSDILGDEDHLGDMDFKVAGSANG-VTALQMDIKIDGITREIMEQALTQAKAGRLHILEI 533

Query: 234 QKDVISNE 241
               I+  
Sbjct: 534 MNQAIAQP 541



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 83/229 (36%), Gaps = 27/229 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
           +++L    +++ A+G+ +V    T +L TA    T+ E    +     +   +   G +P
Sbjct: 13  QVTLESGEIARQADGAVMVNMEGTVVLVTAVAKKTVAEGQDFFPLTVDYQEKSYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR       + R+I R LR +         Q+I     +  D     
Sbjct: 73  ---GGYFRRE---GRPSENETLVSRLIDRPLRPLFPEGFFNEVQVIASVMSVNPDISPDI 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  A+                     G + A   G   G  +++    E  T D+
Sbjct: 127 PAMIGASAAIA-------------LSGVPFNGPIGAARVGYKNGAYLLNPSDKELQTSDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D     T+ G ++ V+  A      +D     +    +++  +I   ++
Sbjct: 174 DLVVAGTE-GAVLMVESQANE--LPEDVMLGAVMYGHEQMQVVINAIRE 219


>gi|86152881|ref|ZP_01071086.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|85843766|gb|EAQ60976.1| polyribonucleotide nucleotidyltransferase [Campylobacter jejuni
           subsp. jejuni HB93-13]
          Length = 719

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 88/242 (36%), Gaps = 22/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
           R  GR  N++R IS+   +   A GSCL   G T  L  ATL  +    +      +N  
Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G     +A   R+ G       +  RAL   VD +      I + 
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSVDEN--YPYIIRLV 449

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A + G  +AL               +  + + +  A+         + 
Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKHAV---------LT 500

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     +  G +  +Q   +     Q+     L  AK+    ++ + +
Sbjct: 501 DIMGLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 559

Query: 236 DV 237
           + 
Sbjct: 560 EA 561



 Score = 84.8 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 87/242 (35%), Gaps = 60/242 (24%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72
           V+K A G+ L++ G + +L T   EEK            +T +Y       G +P   G 
Sbjct: 19  VAKQAAGAVLMRQGKSVVLATVAREEKQ----VEEDFLPLTVQYIEKAYAAGKIP---GG 71

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            VKRE    +         R+I R+LR +         QI++   V+ AD     +  ++
Sbjct: 72  YVKRET---KPSDAETLTARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPKVDLQVMSL 126

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
             A VAL+     M             K  V  +  G + G  I++ + GE     +D  
Sbjct: 127 NAASVALYLSDIPM-------------KAPVCGVRIGKIDGNFILNPNNGELQNSTLDL- 172

Query: 191 FVMTDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKD 225
           +V      ++ ++  A     E   F                    S+D     LNLA+ 
Sbjct: 173 YVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQK 232

Query: 226 RI 227
            I
Sbjct: 233 AI 234


>gi|189501482|ref|YP_001957199.1| polynucleotide phosphorylase/polyadenylase [Candidatus Amoebophilus
           asiaticus 5a2]
 gi|226702593|sp|B3EU51|PNP_AMOA5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189496923|gb|ACE05470.1| 3' exoribonuclease [Candidatus Amoebophilus asiaticus 5a2]
          Length = 713

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 84/230 (36%), Gaps = 16/230 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56
           +RL GR+ +++R I         A GS L   G+T  LTT TL  K+   + +      +
Sbjct: 320 LRLDGRKLDEIRAIESEIDYLPAAHGSSLFTRGETQSLTTVTLGTKLDEQLIDRALLNGY 379

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     STG          R+ G       +  RAL+ V+ L       I I  
Sbjct: 380 SRFMLHYNFPSFSTGEVKFNRGPGRREIGHGH----LAMRALKKVLPLDTENPYTIRIVS 435

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           D+++++G +  A +    +AL D    +    +   +  ++       +        + D
Sbjct: 436 DILESNGSSSMATVCAGSLALMDAGISIRSAVSGIAMGLLMDEQTGKHAI-------LSD 488

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           +   ED+  D+D     T  G I   Q   + +  +       L  AK  
Sbjct: 489 ILGDEDALGDMDFKVAGTAKG-ITACQMDIKVSGLTPQLLQKALEQAKAG 537



 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 94/238 (39%), Gaps = 28/238 (11%)

Query: 10  QMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYG 64
           + REI++      K A+GS +V+ GDT LL T      L+  V     + ++    A  G
Sbjct: 14  EHREITIETGKLAKQADGSVVVRMGDTMLLATVVFKQELDPTVDFLPLHVEYQEKFAAAG 73

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G  ++RE   G+ G     I R++ RA+R +   +     QI I          
Sbjct: 74  KIP---GGFLRRE---GKLGDHEVLISRLVDRAIRPLFPDNYKHETQINIFL-------- 119

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
                I+     L + L  +   +         +G ++ +    + G  +V+        
Sbjct: 120 -----ISADPEILPESLAGLAASAALMISPIPFEGPISEVRVARIDGQFVVNPTQSALEK 174

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            D+D   V     +I+ V+G  E     +    A +  A + I    ++QK+ +++ V
Sbjct: 175 ADIDL-MVGGSEKNILMVEG--EMDEVQEADIIAAIQFAHEAIKLQCQVQKE-LADAV 228


>gi|149193793|ref|ZP_01870891.1| polynucleotide phosphorylase/polyadenylase [Caminibacter
           mediatlanticus TB-2]
 gi|149135746|gb|EDM24224.1| polynucleotide phosphorylase/polyadenylase [Caminibacter
           mediatlanticus TB-2]
          Length = 725

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 93/246 (37%), Gaps = 22/246 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNT 54
           +R  GR+ +++R IS+   V   A GSCL   G T  L  AT    +   +      +  
Sbjct: 341 IRADGRKLDEIRPISIETNVLPRAHGSCLFTRGQTQALAVATRGGDMDAQVYANLTDKEE 400

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           K       Y     + G  V+     G    R      +  RA+  ++D        + +
Sbjct: 401 KLEKFMLHYNFPAFAVGEAVR----LGPPSRRELGHGNLAKRAIEPLLDPEF--DETVRV 454

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++++++G +  A I  + +AL      +   +    +  V +G   AI         +
Sbjct: 455 VSEILESNGSSSMATICASSIALKAAKVPLLKLAAGIAMGLVSEGEKYAI---------L 505

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED   D+D     T  G I  +Q   +    + D     L  A++  A +++  
Sbjct: 506 TDIMGLEDHDGDMDFKVAGTWDG-ITAMQMDIKLGGIALDILKEALYQAREARAFILEKM 564

Query: 235 KDVISN 240
           ++ + N
Sbjct: 565 ENAVEN 570



 Score = 42.4 bits (99), Expect = 0.056,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 86/257 (33%), Gaps = 60/257 (23%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATL-------EEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           V++ A+ S   + G+T +L T T        E+ VP+ ++  +  +     G +P     
Sbjct: 21  VARQADSSIWWQEGNTVMLATLTYNPDEVIEEDFVPLVVQYVERAYA---VGKIP---AG 74

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            VKRE    + G       R++ R+LR +   +  G   I I    + AD     + +  
Sbjct: 75  FVKREQ---KPGDFETLTARIVDRSLRPLFPKN-FGYDTI-ITIMALSAD---EDSDLQV 126

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
           A +       +M         S      V  +    + G  I +    +      D N  
Sbjct: 127 AAMNAAAACMYM--------SSLPFAKMVHGVRITRIDGEIIFNPTLSQLEKG--DFNLF 176

Query: 193 MTD-SGHIVEV----QGSAERA------------------------TFSQDHFFAMLNLA 223
           +T     ++ +    QG  E                            S+D    +L  A
Sbjct: 177 VTGTKDELLMIEYASQGQEEVEIIPVEDIMLDGVPVENTIIKYKTNEISEDELIEILKKA 236

Query: 224 KDRIADLIKLQKDVISN 240
           +++I +  +  +  + N
Sbjct: 237 QEKIKEGAETYESALKN 253


>gi|315932402|gb|EFV11345.1| S1 RNA binding domain protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 720

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 22/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
           R  GR  N++R IS+   +   A GSCL   G T  L  ATL  +    +      +N  
Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G     +A   R+ G       +  RAL   +D +      I + 
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSLDEN--YPYVIRLV 449

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A + G  +AL               +  + + +  A+         + 
Sbjct: 450 SEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKHAV---------LT 500

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     +  G +  +Q   +     Q+     L  AK+    ++ + +
Sbjct: 501 DIMGLEDHDGDMDFKVAGSKDG-VTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIME 559

Query: 236 DV 237
           + 
Sbjct: 560 EA 561



 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 86/242 (35%), Gaps = 60/242 (24%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72
           V+K A G+ L++ G + +L T   EEK            +T +Y       G +P   G 
Sbjct: 19  VAKQAAGAVLMRQGKSVVLATVAREEKQ----VEEDFLPLTVQYIEKAYAAGKIP---GG 71

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            VKRE    +         R+I R+LR +         QI++   V+ AD     +  ++
Sbjct: 72  YVKRET---KPSDAETLTARIIDRSLRPLFPKGYTYPTQIVV--MVLSADPKVDLQVMSL 126

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
             A VAL+     M             K  V  +  G + G  I++ +  E     +D  
Sbjct: 127 NAASVALYLSDIPM-------------KAPVCGVRIGKIDGNFILNPNNEELQNSTLDL- 172

Query: 191 FVMTDSGHIVEVQGSA-----ERATF--------------------SQDHFFAMLNLAKD 225
           +V      ++ ++  A     E   F                    S+D     LNLA+ 
Sbjct: 173 YVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNELSEDEILEALNLAQK 232

Query: 226 RI 227
            I
Sbjct: 233 AI 234


>gi|326389429|ref|ZP_08210996.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325994434|gb|EGD52859.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 700

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 91/245 (37%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R+ GR  + +R I     V     GS +   G T +LT AT     + ++   I + + 
Sbjct: 312 IRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGIGDEEA 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G          R+ G       +  RAL  V+         I +  
Sbjct: 372 KRYMHHYNFPPYSVGEVRPLRGPGRREIGHG----ALAERALEPVIPSEEEFPYTIRLVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ ++G T  A++ G+ +AL D    ++       +  + +G V ++         + D
Sbjct: 428 EVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSV---------LTD 478

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T+ G I  +Q   +     ++     L  A+     ++    +
Sbjct: 479 IQGIEDFLGDMDFKVAGTEKG-ITAIQMDIKIPGIDKEILKMALEKARRGRLYILNKMLE 537

Query: 237 VISNE 241
           VI   
Sbjct: 538 VIKEP 542



 Score = 88.2 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 87/226 (38%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R++ +    V++ A G+  VK+GDT +L TA       E +  +    ++       G +
Sbjct: 13  RKLLVQIGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEERLYSVGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R +R +         Q+I     +  D    
Sbjct: 73  P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQPE 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ VAL                     G   A++ G++ G  I++ ++ +     
Sbjct: 127 IVAMIGSSVALS-------------ISDIPFNGPTGAVAVGLVDGQFIINPNHEQREKSL 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    IV V+  A+     ++     +  A + I  +++
Sbjct: 174 MHLVVSGTKDA-IVMVEAGAKEIP--EETMLDAIMYAHEYIKQIVE 216


>gi|258511422|ref|YP_003184856.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478148|gb|ACV58467.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 735

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 93/245 (37%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R IS    +     GS L   G T  L+  T     +E++   +   K 
Sbjct: 310 IRPDGRRLDEIRPISCEVGLLPRTHGSALFTRGQTQALSVCTLGSMGDEQLLDGLELEKS 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      A S R  G       +  RAL  V+         I +  
Sbjct: 370 NRYMHHYNFPPFSVGEAKPLRAPSRRDIGHG----ALGERALDPVIPSPEEFPYAIRVVS 425

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G T  A+I G+ +AL D    ++       +  V +G   AI         + D
Sbjct: 426 EILESNGSTSQASICGSTMALMDAGVPIKAPVAGIAMGLVKEGDQVAI---------LSD 476

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T+ G +  +Q   + +   +      L  A++    ++    +
Sbjct: 477 IQGIEDHLGDMDFKVAGTERG-VTALQMDIKISGIDRSILERALKQAREGRMYILSKMME 535

Query: 237 VISNE 241
            IS  
Sbjct: 536 AISEP 540



 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 74/223 (33%), Gaps = 26/223 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R   L      + A  +  V++G+T +L T T     +++  +     +       G +P
Sbjct: 12  RRFVLETGKLARQATAAVHVQYGETVVLATVTASKEPKELDFFPLTVNYEERLYAVGKIP 71

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         QI+     +  D     
Sbjct: 72  ---GGFIKRE---GRPSEHAILASRLIDRPIRPLFPEGFRNDVQIVDLVLSVDQDCAPEI 125

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G   +L                     G +  +  G++ G  +++    +    D+
Sbjct: 126 AAMIGTSASL-------------TISDIPFNGPIGGVIVGLVDGQFVINPTVEQSEKSDL 172

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
                 T    IV V+  A +    ++     +      I  +
Sbjct: 173 HLVVAGTKDA-IVMVEAGANQVP--EEIVLEAILYGHQVIQTI 212


>gi|134299798|ref|YP_001113294.1| polynucleotide phosphorylase/polyadenylase [Desulfotomaculum
           reducens MI-1]
 gi|187610295|sp|A4J5W6|PNP_DESRM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|134052498|gb|ABO50469.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum
           reducens MI-1]
          Length = 740

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 99/249 (39%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR  +++R IS+   V     G+ L   G T +L+ ATL    EE++   +   + 
Sbjct: 324 LRIDGRAIDEIRPISVEVGVLPRTHGTGLFTRGQTQILSVATLGSISEEQILDGLGVEES 383

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG      +   R+ G       +  RAL  ++    +    I +  
Sbjct: 384 KRYMHHYNFPPFSTGETKPMRSPGRREIGHG----ALAERALEPMIPPEEVFPYTIRVVS 439

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + I+++G T   ++ G+ ++L D                 LK  VA ++ G++       
Sbjct: 440 EAIESNGSTSMGSVCGSTLSLMDAGV-------------PLKAPVAGVAMGLIMEEDQFT 486

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     + +G +  +Q   +    +++ F   L  A      ++ 
Sbjct: 487 VLTDIQGLEDHLGDMDFKVAGSANG-VTALQMDIKIPGITREVFEQALEQAHRGRMFILG 545

Query: 233 LQKDVISNE 241
              +V+S  
Sbjct: 546 KMLEVLSTP 554



 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 85/225 (37%), Gaps = 26/225 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R ++L      K A G+ LV +G+T +L TAT+      +  +     +       G +P
Sbjct: 16  RTLTLETGRMAKQASGAVLVTYGETVVLVTATVAKNTRDIDFFPLTVDYEERLYAVGKIP 75

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D     
Sbjct: 76  ---GGFIKRE---GRPSEKAILSGRLIDRPIRPLFPKHMRNEVQVVATVMSVDQDNAPEI 129

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ GA  ALH                  LK  +  +  G + G  +++    +    D+
Sbjct: 130 AAMIGASAALH-------------ISKIPLKKPIGGVIVGRVDGQFVINPMVRQAENSDM 176

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
                 TD   ++ V+  A+     +      +    +++ +++K
Sbjct: 177 HLVVAGTDDA-VMMVEAGAKEVP--ESEMLEGIMYGHEKVKEIVK 218


>gi|284044685|ref|YP_003395025.1| polyribonucleotide nucleotidyltransferase [Conexibacter woesei DSM
           14684]
 gi|283948906|gb|ADB51650.1| polyribonucleotide nucleotidyltransferase [Conexibacter woesei DSM
           14684]
          Length = 761

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 95/248 (38%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R  GR+ +++R I++   V+    GS L   G T  L+TA+L    EE     +      
Sbjct: 316 RPDGRRADEIRPITIEVGVTPRTHGSALFTRGQTQALSTASLGTTREEMRLDTLGLETRK 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
           +    Y   P S G          R  G       +  RAL  +V  +      I +  D
Sbjct: 376 YYFHHYNFPPFSVGEAGFMRGPKRRDIGHG----ALAERALVPMVPSTEEFPYAIRVVSD 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           +++++G +  A++ G+ ++L D                 LK  VA I+ G++     Y +
Sbjct: 432 ILESNGSSSMASVCGSSLSLMDAGV-------------PLKRPVAGIAMGLIKEGDDYIV 478

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    + D     L  AK+    ++  
Sbjct: 479 LSDIAGIEDHLGDMDFKVAGTSEG-ITALQMDIKITGVTFDILRDALAQAKEGREFILGK 537

Query: 234 QKDVISNE 241
               ++  
Sbjct: 538 MATALAKP 545



 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 83/225 (36%), Gaps = 24/225 (10%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE--EKVPMWIRNTKHGWITAEYGMLPRS 69
           EIS       K A G+ +V+ GDT +L+TAT      V                G +P  
Sbjct: 16  EISFETGRMAKQASGAVVVRSGDTMVLSTATAGNLRDVDFLPLTVDVEERMYAAGKIP-- 73

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G+  KRE   GR G ++    RM+ R +R +         Q++     +  +      A
Sbjct: 74  -GSFFKRE---GRAGEKATLTARMVDRPIRPLFPKGWRRETQLVTLTLSVDHEHPYDVLA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + GA  AL                       V ++  G + G  +V+ +  ED   + D 
Sbjct: 130 MNGASAAL-------------MISDIPFPTPVGSVRIGKVDGNFVVNPN-EEDLLENTDL 175

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           + ++  +   + +  +       +      L++A D I  L +LQ
Sbjct: 176 DLIVAGTEEAILMVEAG-ANEIPEAEILDALDIAHDAIKKLCRLQ 219


>gi|218290095|ref|ZP_03494257.1| Polyribonucleotide nucleotidyltransferase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239804|gb|EED06993.1| Polyribonucleotide nucleotidyltransferase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 735

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 93/245 (37%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R IS    +     GS L   G T  L+  T     +E++   +   K 
Sbjct: 310 IRPDGRRLDEIRPISCEVGLLPRTHGSALFTRGQTQALSVCTLGSMGDEQLLDGLELEKS 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      A S R  G       +  RAL  V+         I +  
Sbjct: 370 NRYMHHYNFPPFSVGEAKPLRAPSRRDIGHG----ALGERALDPVIPSPEEFPYAIRVVS 425

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G T  A+I G+ +AL D    ++       +  V +G   AI         + D
Sbjct: 426 EILESNGSTSQASICGSTMALMDAGVPIKAPVAGIAMGLVKEGDQVAI---------LSD 476

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T+ G +  +Q   + +   +      L  A++    ++    +
Sbjct: 477 IQGIEDHLGDMDFKVAGTERG-VTALQMDIKISGIDRSILERALKQAREGRMYILSKMME 535

Query: 237 VISNE 241
            IS  
Sbjct: 536 AISEP 540



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 74/223 (33%), Gaps = 26/223 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R   L      + A  +  V++G+T +L T T     +++  +     +       G +P
Sbjct: 12  RRFVLETGKLARQATAAVHVQYGETVVLATVTASKEPKELDFFPLTVNYEERLYAVGKIP 71

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         QI+     +  D     
Sbjct: 72  ---GGFIKRE---GRPSEHAILASRLIDRPIRPLFPEGFRNDVQIVDLVLSVDQDCAPEI 125

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G   +L                     G +  +  G++ G  +++    +    D+
Sbjct: 126 AAMIGTSASL-------------TISDIPFNGPIGGVIVGLVDGQFVINPTVEQSEKSDL 172

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
                 T    IV V+  A +    ++     +      I  +
Sbjct: 173 HLVVAGTKDA-IVMVEAGANQVP--EEIVLEAILYGHQVIQTI 212


>gi|196014350|ref|XP_002117034.1| hypothetical protein TRIADDRAFT_61054 [Trichoplax adhaerens]
 gi|190580256|gb|EDV20340.1| hypothetical protein TRIADDRAFT_61054 [Trichoplax adhaerens]
          Length = 240

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 84/242 (34%), Gaps = 9/242 (3%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   +       +         A GS  ++  +T ++       +V           + 
Sbjct: 1   MRKDYQLPKFYDRLVCRTGAVSQAVGSAYIELRNTKIICAVYGPREVAKKQEFNIQATVA 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            E      S   R +R  +   Q  + +E  ++I +AL+ VV L      QI I   V+Q
Sbjct: 61  CELKFATFSC--RRRRRHI---QDSQEKEYSQIIVQALQPVVRLDKYPKSQIDIFITVLQ 115

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
            DG     AIT A VAL D    + D +    L Q+    +   +     G     L+  
Sbjct: 116 NDGSVLGGAITAASVALADSGIEIFDVAIGCCLRQIGDLSLIDPTYLEEEGR----LNNE 171

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           E+  I  +AN  +     + +V           D    ++    +    +  + ++ ++ 
Sbjct: 172 EEDEIVTNANVTIALLPSLNQVSALIMNGELDVDSTQRIIKDCLEGCIRIYPVVRECLTK 231

Query: 241 EV 242
            +
Sbjct: 232 SL 233


>gi|163783568|ref|ZP_02178558.1| polyribonucleotide nucleotidyltransferase [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159881188|gb|EDP74702.1| polyribonucleotide nucleotidyltransferase [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 773

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 87/250 (34%), Gaps = 25/250 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTK 55
           +R+ GR+  ++R IS+     +   G  +   G T    T TL       +         
Sbjct: 310 VRIDGRKPEEIRPISIEIHPFERPHGCAVFTRGQTQAYVTVTLGAPDEAQLIETIAEGEV 369

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P S G          R+ G       +  RAL  V+         I + 
Sbjct: 370 FKRFMLHYNFPPFSGGEARSWGPPRRREIGHG----ALAERALEPVIPEEDDFPYIIRVV 425

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            D+++++G T  A + G  +AL D    ++              HV+ I+ G++      
Sbjct: 426 SDILESNGSTSMATVCGGSLALFDAGVPIKGGK-----------HVSGIAMGLIKEGDRY 474

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G +  +Q   +    +++     L  AK+    ++
Sbjct: 475 VILSDILGDEDHLGDMDFKVAGTREG-VTSIQMDIKIKGITKEIMTEALKQAKEGRLYIL 533

Query: 232 KLQKDVISNE 241
           +   + I   
Sbjct: 534 EKMYEAIPEP 543



 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/232 (24%), Positives = 89/232 (38%), Gaps = 33/232 (14%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLP 67
            I +     +K A+G+ +V+ G T +L TA + ++    I  T     +    + YG +P
Sbjct: 13  PIVIEVGRYAKQADGAVVVRQGGTAVLVTAVMSDEPNTEIDFTPLTVDYRERPSAYGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG--T 125
              G  VKRE   G+   R     R+I R LR +          +++    + AD     
Sbjct: 73  ---GGFVKRE---GKPSEREVLASRVIDRPLRPLFPEGFFHD--VVVTALTLSADDNYDP 124

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AITGA  ALH                   +G +A +    + G  + +  Y E    
Sbjct: 125 DVLAITGASAALH-------------ISRIPFEGPIAGVRVCKVGGEFVANPTYEERK-- 169

Query: 186 DVDANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D D   VM      IV V+G A+     ++     L    + I + I LQ+ 
Sbjct: 170 DADLEIVMAGTKDAIVMVEGGAKEVP--EEVITEALFFGHEAIQEAIALQEK 219


>gi|77919161|ref|YP_356976.1| polynucleotide phosphorylase/polyadenylase [Pelobacter carbinolicus
           DSM 2380]
 gi|123574179|sp|Q3A4A1|PNP_PELCD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|77545244|gb|ABA88806.1| polynucleotide phosphorylase/cytidylate kinase [Pelobacter
           carbinolicus DSM 2380]
          Length = 699

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKH 56
           +R+ GR +N +R I+    +   A GS L   G+T  L  A    + +E+    +++ + 
Sbjct: 312 VRIDGRDKNTIRPITCEIGLLPRAHGSALFTRGETQALVAAALGTSKDEQRMDNVQSMEF 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P   G    R     R+ G       +  R++  V+         + +  
Sbjct: 372 KKFMLHYNFPPFCVGETSMRLFPGRREIGHGM----LAERSIAQVLPNHDDFPYTLRVVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           D+++++G +  A++ GA +AL D                 +   VA I+ G++       
Sbjct: 428 DILESNGSSSMASVCGASLALMDAGV-------------PVSEAVAGIAMGLIKEGDDIV 474

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S++     L  A++    ++ 
Sbjct: 475 VLSDILGDEDHLGDMDFKVTGTREG-ITALQMDIKIKGVSKEIMQQALEQAREGRLHILD 533

Query: 233 LQKDVI 238
              + I
Sbjct: 534 KMAEAI 539



 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 88/232 (37%), Gaps = 29/232 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L      + A+G+ +V FG T +L TA     + E    +     +       G +P 
Sbjct: 15  LTLETGKMARQADGAVVVSFGGTKVLCTAVSAKQMREGQSFFPLTVNYQEKFYAGGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE  +     R   + R+I R LR +     +   QI+     +       T 
Sbjct: 74  --GSFFRRERGA---TERETLVCRLIDRPLRPLFPKGYMFETQIMPTVISVDEQNDPDTL 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  A+                     G VAA+  G + G  I +     +   + D
Sbjct: 129 AMVGASAAIA-------------VSDIPFDGPVAAVRVGRVEGNLIANPTI--EQRAESD 173

Query: 189 ANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            + +++ S   I+ V+G  E    S+      L  A + I  LI +Q +++ 
Sbjct: 174 MDIIVSGSRDAIIMVEG--ETRFISEQEMLDALFFAHEAIQPLIDVQLELVK 223


>gi|222055786|ref|YP_002538148.1| Polyribonucleotide nucleotidyltransferase [Geobacter sp. FRC-32]
 gi|257096693|sp|B9M1G5|PNP_GEOSF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|221565075|gb|ACM21047.1| Polyribonucleotide nucleotidyltransferase [Geobacter sp. FRC-32]
          Length = 696

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R+I+    +   A GS L   G+T  L  ATL   +     ++  G    
Sbjct: 312 RIDGRDTKTIRQITTEVGLLPRAHGSALFTRGETQALVVATLGTSIDEQRIDSLFGESKK 371

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R A   R+ G       +  RAL  VV         I I  D
Sbjct: 372 RFLLHYNFPPFSVGETSFRLAPGRREIGHGM----LAERALARVVPKHESFPYTIRIVSD 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           +++++G +  A++ G  +++ D                 +K  VA I+ G++        
Sbjct: 428 ILESNGSSSMASVCGGSMSMMDAGI-------------PIKAPVAGIAMGLIKEGDDFAI 474

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     L  A +    ++  
Sbjct: 475 LSDILGDEDHLGDMDFKVAGTSTG-VTALQMDIKIGGVTREIMGVALKQAHEGRLHILSK 533

Query: 234 QKDVISN 240
             + I  
Sbjct: 534 MAETIGT 540



 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 82/228 (35%), Gaps = 27/228 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R I++      K A G+ +V  GDT +L TA    T +E    +     +       G +
Sbjct: 12  RTITIETGKMAKQASGAVVVSSGDTRVLVTAVATKTAKEGQDFFPLTVNYQEKAYAGGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KREA   R         R+I R +R +   + L   QI+        D    
Sbjct: 72  P---GGFFKREA---RPSDNETLTCRLIDRPIRPLFPDNFLNDTQIMATVISADKDNDPG 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             ++ GA  AL                    +G +A +  G + G  + +  + E    D
Sbjct: 126 ILSMVGASAAL-------------MVSDIPFQGPIAGVKVGRIDGRFVANPGFEEMEKSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           ++   V      I+ V+GSA  A  S++     +      I  L+  Q
Sbjct: 173 IEI-VVAASKDAIIMVEGSA--AEVSEEDMLEAIFFGHAAIQGLLAAQ 217


>gi|284036900|ref|YP_003386830.1| polyribonucleotide nucleotidyltransferase [Spirosoma linguale DSM
           74]
 gi|283816193|gb|ADB38031.1| polyribonucleotide nucleotidyltransferase [Spirosoma linguale DSM
           74]
          Length = 708

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 91/243 (37%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           RL GR+ +Q+R+IS          GS L   G+T  LTT TL  K    I +      + 
Sbjct: 318 RLDGRKLDQIRQISAEAGYLPGPHGSALFTRGETQSLTTVTLGTKTDEQIVDQTMFQGYS 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     STG          R+ G       +  R+L+ V+  +      I I  D
Sbjct: 378 KFLLHYNFPGFSTGEVKPNRGAGRREIGHG----NLAHRSLKKVLPPAEENPYTIRIVSD 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +++++G +  A +    +AL D    ++       +  +  G   A+         + D+
Sbjct: 434 ILESNGSSSMATVCAGTMALMDAGIKIKAPVAGIAMGLISDGDKYAV---------LSDI 484

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G IV  Q   +    S +     L  A+     ++   K  
Sbjct: 485 LGDEDHLGDMDFKVTGTEKG-IVACQMDLKVDGLSYEVLAQALEQARVGRLHILGEMKKG 543

Query: 238 ISN 240
           IS+
Sbjct: 544 ISD 546



 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 86/239 (35%), Gaps = 33/239 (13%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
             G      REI++      + A+G+ +V+ GDT LL T       +E V     +  + 
Sbjct: 12  PDG------REITIETGKLARQADGAVVVRLGDTMLLATVVSSKDAKEGVDFLPLSVDYQ 65

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
              A  G +P   G+  +RE   GR G     I R++ RALR +   +     Q++I   
Sbjct: 66  EKFASAGRIP---GSFQRRE---GRLGDHEILISRLVDRALRPIFPDNYHADTQVMITL- 118

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
                       I+       D L  +   S          G ++ +    + G   ++ 
Sbjct: 119 ------------ISADPEVQPDALAALAASSALAVSDIPFNGPISEVRVAKIDGQYKINP 166

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              E     +D     T+   I  V+G  E    S+      L +A + I    + QK+
Sbjct: 167 KTAELERATIDLIVAATEKD-ICMVEG--EMDECSEAEVVEALKVAHEAIKIQCQAQKE 222


>gi|223985743|ref|ZP_03635787.1| hypothetical protein HOLDEFILI_03093 [Holdemania filiformis DSM
           12042]
 gi|223962253|gb|EEF66721.1| hypothetical protein HOLDEFILI_03093 [Holdemania filiformis DSM
           12042]
          Length = 731

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 91/250 (36%), Gaps = 27/250 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR  +++R ++    +     GS +   G+T ++   T  A  + ++   +   + 
Sbjct: 318 IRPDGRAVDELRPLNSQVDLLPRVHGSAMFTRGETQVMSACTLGALGDNQIIDDLTEIET 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R      +  RAL +V+         I +  
Sbjct: 378 KRFMHHYNFPPYSVGETGR----MGSPGRREIGHGALGERALSAVIPSEEEFPYTIRLVA 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171
           +V++++G +  A+I    +AL                   +K  VA ++ G++       
Sbjct: 434 EVLESNGSSSQASICAGTMALMSAGV-------------PIKAPVAGVAMGLIKTSDEHY 480

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I  +Q   +    ++      L  AK   A+++
Sbjct: 481 TVLTDIQGMEDHYGDMDFKVAGTPKG-ITALQMDIKIDGINRAILEEALAQAKKGRAEIM 539

Query: 232 KLQKDVISNE 241
                 IS  
Sbjct: 540 ANMMAAISEP 549



 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 88/234 (37%), Gaps = 28/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R +++    ++K A G+ +V++ DT +L+TAT         +++    +T  +     S 
Sbjct: 13  RNLTIETGEIAKQAGGAVVVRYQDTVVLSTATANHT----PKDSDFFPLTVSFEEKLYSV 68

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G      ++RE   GR    +    RMI R +R +         Q++     +  D    
Sbjct: 69  GKIPGGFLRRE---GRPSEHATLTARMIDRPIRPLFAEGFRNEVQVVNTVLSVDQDCSAE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA  AL                     G +A +  G + G  +++    E    D
Sbjct: 126 MAAMFGASCALC-------------ISDIPFNGPIAGVIVGRVDGKFVINPSVEESEKSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    I  V+  A+    S++     L    D I  L + Q+ +I+ 
Sbjct: 173 IHLTVAGTKDA-INMVEAGAKE--VSEEEMIDALMFGHDHIKMLCEFQEQIIAK 223


>gi|56460072|ref|YP_155353.1| polynucleotide phosphorylase/polyadenylase [Idiomarina loihiensis
           L2TR]
 gi|81363045|sp|Q5QYE1|PNP_IDILO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56179082|gb|AAV81804.1| Polynucleotide phosphorylase [Idiomarina loihiensis L2TR]
          Length = 716

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR  + +R IS+   V     GS L   G+T  L TATL       +          
Sbjct: 314 RIDGRDPDMVRAISVATGVLPRTHGSALFTRGETQALVTATLGTDRDAQMIDELTGMNTN 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R +++V+         I +  +
Sbjct: 374 RFMLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGIQAVMPSHDEFPYTIRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G+ +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGSSLALMDAGV-------------PIKSSVAGIAMGLVKEGDKHVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D        G I  +Q   +    ++D   + L  AK     ++K+
Sbjct: 477 LSDILGDEDHLGDMDFKVAGNTDG-ITALQMDIKIDGITRDIMESALAQAKSARLHILKV 535

Query: 234 QKDVISNE 241
             + I   
Sbjct: 536 MDEAIGGH 543



 Score = 69.0 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 71/225 (31%), Gaps = 27/225 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  S L    DT +L T        E    +     +   T   G +P 
Sbjct: 15  VTLETGVIARQATASVLASIDDTTVLVTVVAKKEAREGQNFFPLTVNYQEKTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +     +   Q++     +         
Sbjct: 74  --GGFFKRE---GRPSENETLTCRLIDRPIRPLFPDGFMNEVQVVATVVSVNPQINPDIV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G   AL                     G + A   G++    +++    E     +D
Sbjct: 129 ALIGTSAALS-------------ISGVPFAGPIGAARVGVVNDEYVLNPTADELENSKLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
                TD   ++     +E    S+D     +    + + D+IK 
Sbjct: 176 LVVAGTDKAVLMV---ESEAQLLSEDQMLGAVMYGHEAMQDVIKA 217


>gi|71665831|ref|XP_819881.1| ribosomal RNA processing protein 41A [Trypanosoma cruzi strain CL
           Brener]
 gi|70885202|gb|EAN98030.1| ribosomal RNA processing protein 41A, putative [Trypanosoma cruzi]
          Length = 252

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 18/182 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59
           +RL GR+  + R ++L        +G C V  G   +  +     +V   + +      I
Sbjct: 13  LRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLATVCASVYGPREVTNRLESKYNECII 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           T E  +   +   R        R+   S+E+   +    RSVV LS   + QI I  +V+
Sbjct: 73  TCEVAIAAFAGEKRR----APQRRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHICVEVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           + DG  + A I  A +AL D    M D              V A + G++    +VDL  
Sbjct: 129 RQDGSDKAACINAACLALVDACVAMRDI-------------VYAQTVGLIHAVDVVDLTT 175

Query: 180 GE 181
            E
Sbjct: 176 EE 177


>gi|332187913|ref|ZP_08389646.1| polyribonucleotide nucleotidyltransferase [Sphingomonas sp. S17]
 gi|332012074|gb|EGI54146.1| polyribonucleotide nucleotidyltransferase [Sphingomonas sp. S17]
          Length = 773

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 94/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR   Q+R I         A GS L   G+T  + T TL  K    + +  +G    
Sbjct: 314 RIDGRSTTQIRPIESEVHFLPRAHGSALFTRGETQTIATTTLGTKDAEQMIDGLNGLSYQ 373

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G      ++  RAL  V+         I +  D
Sbjct: 374 HFMLHYNFPPYSVGEVGRFGAPGRREIGHG----KLAWRALHPVLPSKEEFPYTIRVTSD 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  ++L D    ++   +   +  +L+G   AI         + D+
Sbjct: 430 ITESNGSSSMATVCGGSLSLMDAGVPLKRPVSGIAMGLILEGKDYAI---------LSDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   + A  +++ F A L  AKD  A ++      
Sbjct: 481 LGDEDHLGDMDFKVAGTSEG-ITTMQMDIKIAGITKEIFEAALAQAKDGRAHILGEMNKA 539

Query: 238 ISN 240
           +  
Sbjct: 540 LGE 542



 Score = 82.8 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 74/226 (32%), Gaps = 29/226 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           ++L    V++ A+G+ +   G+T +L   T  + V           +T  Y     S+  
Sbjct: 16  LTLETGKVARQADGAVIATLGETVVLCAVTAAKNV---KEGQDFFPLTVHYQ-EKFSSAG 71

Query: 73  RVKREAVSGRQG--GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTA 128
           R+        +G   R   I R+I R +R +          I     V+  DG       
Sbjct: 72  RIPGGFFKRERGATERETLISRLIDRPIRPLFPEGFYNE--INCIAQVLSYDGENEPDIL 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+  A  AL                     G + A   G   G   ++    E    ++D
Sbjct: 130 AMIAASAAL-------------TISGVPFMGPIGAARVGYKNGEYQLNPSDSEVLEGELD 176

Query: 189 ANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
                T D+  +VE    +E    S++     +  A      +I+ 
Sbjct: 177 LVVAATHDAVMMVE----SEAKELSEEVMLGAVMFAHKASGQVIEA 218


>gi|312879870|ref|ZP_07739670.1| polyribonucleotide nucleotidyltransferase [Aminomonas paucivorans
           DSM 12260]
 gi|310783161|gb|EFQ23559.1| polyribonucleotide nucleotidyltransferase [Aminomonas paucivorans
           DSM 12260]
          Length = 756

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 22/244 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKV--PMWIRNTK 55
           R  GR+ +++R I     +   A GS L   G+T  L   T     E+         +  
Sbjct: 312 RADGRKMDELRPICCETGLLPKAHGSALFTRGETQSLAVTTLGMVGEDDQILDGLKHDEP 371

Query: 56  HGWITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                  Y   P S G  R  R       G R      +  RALR +    A     + +
Sbjct: 372 SKRFLLHYNFPPYSVGEVRPMRG-----PGRREIGHGALAERALRPMFPDEAAFPYVVRV 426

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             D+++++G +  A++ G  +++ D    ++       +  V  G              +
Sbjct: 427 VSDILESNGSSSMASVCGGSLSMMDAGVPLKKAVAGVAMGLVTDGSRV---------RIL 477

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED   D+D     T  G +  +Q   +    ++      L+ A++    ++ + 
Sbjct: 478 TDIQGLEDHYGDMDFKVTGTRDG-VTALQMDNKAGGITRAILEQALSQAREGRMKILDIM 536

Query: 235 KDVI 238
              +
Sbjct: 537 DGAL 540



 Score = 69.0 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 75/226 (33%), Gaps = 27/226 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R +S       K A  S   ++G+T +L T+ L     E +  +     +       G +
Sbjct: 12  RTLSFETGKMAKQANASVFARYGETVILVTSVLAEKAREGLDFFPLLVDYEERFYSAGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR    +    RM+ R++RS+          ++     +       
Sbjct: 72  P---GGFIKRE---GRPSETAILSGRMVDRSIRSLFPDYLRNDVHVVATVLSVDQQNAPN 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI                 +         +G + A+  G L G  +V+    E     
Sbjct: 126 VLAIN-------------AASAALALSDIPWEGPIGAVRIGCLDGNLVVNPTEQEIPLST 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +D   V    G I  V+  A+    S+      L LA   I  ++ 
Sbjct: 173 LDL-LVAGHEGGITMVEAGAQE--VSEALLVDALELAHREIRRIVA 215


>gi|284047833|ref|YP_003398172.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus
           fermentans DSM 20731]
 gi|283952054|gb|ADB46857.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus
           fermentans DSM 20731]
          Length = 690

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHL---LTTATLEEKVPMW-IRNTKH 56
           +R  GR  +++R IS    +     G  L   G T +   L  A L E   +  +     
Sbjct: 310 IRPDGRALDEVRPISCEVGLLARPHGCSLFTRGQTQVLNCLALAPLREAQNLETLAGDIQ 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      +   R+ G       +  RAL  V+         I +  
Sbjct: 370 KRYIHHYNFPPYSVGETKPLRSPGRREIGHG----ALAERALLPVIPSEEEFPYTIRLVS 425

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+   + ++L D                 +K  V+ ++ G++       
Sbjct: 426 EVLESNGSSSMASTCASTLSLMDAGV-------------PIKAPVSGVAMGLVKEGENFT 472

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G I  +Q   +    ++D   A L  AK   A ++ 
Sbjct: 473 ILTDIQGLEDANGDMDFKVAGTSKG-ITAIQMDIKVDGLTKDILQAALAQAKKGRAFILG 531

Query: 233 LQKDVISNE 241
              + I+  
Sbjct: 532 KMLECIAEP 540



 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 87/230 (37%), Gaps = 27/230 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R +++    ++K A G+ LV++G+T ++  AT      E V  +             G +
Sbjct: 11  RTLTIETGKIAKQANGAVLVRYGETAVVVAATGTDTPREGVDFFPLTVDFEEKMYAVGKI 70

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  ++RE   GR    +    R+I R +R +         QI+     +  D    
Sbjct: 71  P---GGFLRRE---GRPAETAILTSRLIDRPIRPMFPDGYHNDVQIVCTAVSVDPDNAPD 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                    +G +A +  G++ G  IV+    +    +
Sbjct: 125 IPAMIGASCALS-------------ISDIPFEGPIAGVRVGLIDGQFIVEPTVEQAKVSE 171

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           ++     T    I+ V+  A+    S++     +  A   I  L++ Q+ 
Sbjct: 172 LNLAVAGTKDA-ILMVEAGAKE--VSEEVMLDAIWFAHGEIKKLVEFQEK 218


>gi|150021487|ref|YP_001306841.1| polynucleotide phosphorylase/polyadenylase [Thermosipho
           melanesiensis BI429]
 gi|187611329|sp|A6LNF5|PNP_THEM4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|149794008|gb|ABR31456.1| Polyribonucleotide nucleotidyltransferase [Thermosipho
           melanesiensis BI429]
          Length = 699

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH----LLTTATLEEKVPMWIRNTKH 56
           +R  GR   ++R I+    V     GS L   G+T     +   A +EE++   I     
Sbjct: 321 IRADGRTPEEIRPITCEVGVLPRTHGSALFTRGETQSLGIVTLGAPMEEQIVDTIMEEGT 380

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G          R+ G       +  RAL++V          + +  
Sbjct: 381 KRFILHYNFPPFSVGEVKPLRGPGRREIGHGH----LAERALKAVAPDEEDFPYVVRVVS 436

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++++++G +  A +    +AL D                 +K HVA ++ G++       
Sbjct: 437 EILESNGSSSMATVCSGSLALMDAGV-------------PIKTHVAGVAMGLIVDEENEV 483

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T +G I   Q   + A   ++     L  A+     ++ 
Sbjct: 484 VLTDIQGLEDHWGDMDFKVAGTRNG-ITAFQMDCKIAGVGEELLKKALKQARVARMRILD 542

Query: 233 LQKDVISNE 241
           +  + I   
Sbjct: 543 IMFETIKEP 551



 Score = 95.5 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 96/237 (40%), Gaps = 33/237 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY------- 63
           R++++    V+K + G+  V+FGD+ +L TA + ++V   I       +T EY       
Sbjct: 14  RKLTIQYGKVAKQSSGAAWVQFGDSVVLATANISDRV---IEGVDFVPLTVEYQEKFYAA 70

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           G +P   G  +KRE   G+    +    R+I R +R +         Q+I+    +  D 
Sbjct: 71  GKIP---GGFIKRE---GKPTESAILSARLIDRPIRPLFPKYLRNDVQLIVTVLSVDGDT 124

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
                 I  A +AL+                   +G VA +  G + G  ++     +  
Sbjct: 125 PPDVTGIFAASLALN-------------FSKIPFQGIVAGVRIGYVDGEFVIFPTEEQLK 171

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
              +D   V      I  V+G A+    +++     L +A + I  LI+ +++++  
Sbjct: 172 NSKLDI-VVAGSKDAITMVEGEAKE--VTEEEMVQALMVAHEAIKKLIEFEEEILRE 225


>gi|167037615|ref|YP_001665193.1| polynucleotide phosphorylase/polyadenylase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116030|ref|YP_004186189.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|257096712|sp|B0K9P4|PNP_THEP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|166856449|gb|ABY94857.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929121|gb|ADV79806.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 700

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 91/245 (37%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R+ GR  + +R I     V     GS +   G T +LT AT     + ++   I + + 
Sbjct: 312 IRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGIGDEEA 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G          R+ G       +  RAL  V+         I +  
Sbjct: 372 KRYMHHYNFPPYSVGEVRPLRGPGRREIGHG----ALAERALEPVIPSEEEFPYTIRLVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ ++G T  A++ G+ +AL D    ++       +  + +G V ++         + D
Sbjct: 428 EVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSV---------LTD 478

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T+ G I  +Q   +     ++     L  A+     ++    +
Sbjct: 479 IQGIEDFLGDMDFKVAGTEKG-ITAIQMDIKIPGIDKEILKMALEKARRGRLYILSKMLE 537

Query: 237 VISNE 241
           VI   
Sbjct: 538 VIKEP 542



 Score = 88.2 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 87/226 (38%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R++ +    V++ A G+  VK+GDT +L TA       E +  +    ++       G +
Sbjct: 13  RKLLVQIGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEERLYSVGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R +R +         Q+I     +  D    
Sbjct: 73  P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQPE 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ VAL                     G   A++ G++ G  I++ ++ +     
Sbjct: 127 IVAMIGSSVALS-------------ISDIPFNGPTGAVAVGLVDGQFIINPNHEQREKSL 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    IV V+  A+     ++     +  A + I  +++
Sbjct: 174 MHLVVSGTKDA-IVMVEAGAKEIP--EETMLDAIMYAHEYIKQIVE 216


>gi|319892292|ref|YP_004149167.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161988|gb|ADV05531.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 697

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 95/249 (38%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +   A GS L   G T  L+  TL    E ++   +   +H
Sbjct: 318 IRPDGRKPDEIRPLSSEVGLLPRAHGSGLFTRGQTQALSVLTLGSISEYQIIDGLGEEEH 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RALR ++         + I  
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALRYIIPDEKTFPYTVRIVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G +  A+I G+ +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREESYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G I  +Q   +    +++     L  A+     +++
Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTTEG-ITAIQMDIKIDGLTKEVIEEALEQARKGRLAILE 539

Query: 233 LQKDVISNE 241
                I   
Sbjct: 540 HMMQTIDQP 548



 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 93/234 (39%), Gaps = 32/234 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPR 68
            +++    ++K A G+ LV++GDT +L+TAT          +     +       G +P 
Sbjct: 16  PLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG--TR 126
             G   KRE   GR G  +    R+I R +R +         QII    V+ AD      
Sbjct: 75  --GGFKKRE---GRPGDEATLTARLIDRPIRPLFPDGYRHDVQIINT--VLSADPNCSPE 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ G+ +AL                    +G +A ++ G + G  +++ +  +     
Sbjct: 128 MAAMIGSSMALS-------------VSDIPFQGPIAGVNVGYVDGEYVINPNLEQREKSR 174

Query: 187 VDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +D       D+ ++VE    A  +  ++      +    + I  L   Q+++I+
Sbjct: 175 LDLEVAGHKDAVNMVE----AGASEITEAEMLEAILFGHEEIKRLCAFQEEIIA 224


>gi|119356388|ref|YP_911032.1| polynucleotide phosphorylase/polyadenylase [Chlorobium
           phaeobacteroides DSM 266]
 gi|187610253|sp|A1BDY1|PNP_CHLPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|119353737|gb|ABL64608.1| Polyribonucleotide nucleotidyltransferase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 732

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 88/241 (36%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           RL GR  +++R IS+   +   A GS L   G+T  L T TL  K        + ++   
Sbjct: 332 RLDGRTLDEIRPISIELGIIPRAHGSALFTRGETQALVTITLGTKKDAQSVDTLTDSADK 391

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G       +  R+++ V          I I  D
Sbjct: 392 RFMLHYNFPPFSVGETGRVGGTGRREIGHG----NLAERSIKMVSPSETDFPYTIRIVSD 447

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +++++G +  A++ G  +AL D    +    +   +  + +G   ++         + D+
Sbjct: 448 ILESNGSSSMASVCGGTLALMDGGVPIRKPVSGIAMGLIKEGDAYSV---------LSDI 498

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I   Q   +            L  A+     ++   +  
Sbjct: 499 LGNEDHLGDMDFKVAGTEDG-ITACQMDIKIDGLDYHILETALEQARKGRLHILDKMEVA 557

Query: 238 I 238
           I
Sbjct: 558 I 558



 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 83/227 (36%), Gaps = 22/227 (9%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGWITAEYGMLPRST 70
           +S+      K A+G+ LV+ GDT +L T    +  P   ++          +Y    +  
Sbjct: 15  LSIETGKMAKQADGAALVRLGDTMVLATVVSSKTPPPANQDYFPLQVEYREKYSAAGKFP 74

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR   +     R+I RALR +     L   QII+   V  +D     A +
Sbjct: 75  GGFFKRE---GRPSEKEILTARLIDRALRPLFPDGYLFETQIIVT--VFSSD-QINDADV 128

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            G   A           +            ++ +  G + G  IV+ +  E    D+D  
Sbjct: 129 LGGVAA----------SAAIMVSDIPFHNSMSEVRVGRINGEFIVNPNINELQGSDIDIC 178

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              T +  I  ++G  E    S+      +    + I  +  LQ ++
Sbjct: 179 IGGT-ANTICMLEG--EMKEISEAEMLDAIKFGHEAIRKICALQDEM 222


>gi|76789587|ref|YP_328673.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           A/HAR-13]
 gi|237803274|ref|YP_002888468.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           B/Jali20/OT]
 gi|123606542|sp|Q3KKJ7|PNP_CHLTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|76168117|gb|AAX51125.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
           A/HAR-13]
 gi|231274508|emb|CAX11304.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
           B/Jali20/OT]
          Length = 695

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 93/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKH 56
           +R+ GR   ++R IS+         GSCL   G+T    + T   E     +  +     
Sbjct: 314 IRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDGA 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +     G  G R     ++  +AL  V+  ++     I ++ 
Sbjct: 374 ARFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHVLPETSRFPYIIRLES 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++ +++G +  A++ G  +AL D                 +K  VA I+ G++       
Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGV-------------PIKAPVAGIAMGLILDRDQAI 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I   Q   +    +       L  AK   + ++ 
Sbjct: 477 ILSDISGIEDHLGDMDFKVAGTAKG-ITAFQMDIKIEGITHKIMEQALAQAKQGRSHILN 535

Query: 233 LQKDVISNE 241
           L   V+++ 
Sbjct: 536 LMTQVLASP 544



 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 85/235 (36%), Gaps = 33/235 (14%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
                +++ A G+ LVK  +T +      A+L E V        +     ++    R++G
Sbjct: 18  FETGKIARQASGAILVKMNETWVFSSACAASLSEAVDFLPFRVDYQE---KFSSAGRTSG 74

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAA 129
             +KRE   GR   R   + R+I R+LR       +   Q++        DG T     A
Sbjct: 75  GFLKRE---GRPSEREILVSRLIDRSLRPSFPNRLMQDIQVLSYVW--SYDGKTLPDPLA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           I GA  AL                       +A +  G++ G  +++    E S   +D 
Sbjct: 130 ICGASAALA-------------ISEVPQNCIIAGVRVGLVGGKWVINPTRDELSASKLDL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL---IKLQKDVISNE 241
               T S  ++ ++G       +++     +   +  IA +   I+  +     +
Sbjct: 177 VMAGTASA-VLMIEG--HCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKATGKQ 228


>gi|167040276|ref|YP_001663261.1| polynucleotide phosphorylase/polyadenylase [Thermoanaerobacter sp.
           X514]
 gi|256750798|ref|ZP_05491683.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300914360|ref|ZP_07131676.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
           X561]
 gi|307724404|ref|YP_003904155.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
           X513]
 gi|257096713|sp|B0K1D0|PNP_THEPX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|166854516|gb|ABY92925.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
           X514]
 gi|256750381|gb|EEU63400.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300889295|gb|EFK84441.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
           X561]
 gi|307581465|gb|ADN54864.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
           X513]
          Length = 700

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 91/245 (37%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R+ GR  + +R I     V     GS +   G T +LT AT     + ++   I + + 
Sbjct: 312 IRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGIGDEEA 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G          R+ G       +  RAL  V+         I +  
Sbjct: 372 KRYMHHYNFPPYSVGEVRPLRGPGRREIGHG----ALAERALEPVIPSEEEFPYTIRLVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ ++G T  A++ G+ +AL D    ++       +  + +G V ++         + D
Sbjct: 428 EVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSV---------LTD 478

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T+ G I  +Q   +     ++     L  A+     ++    +
Sbjct: 479 IQGIEDFLGDMDFKVAGTEKG-ITAIQMDIKIPGIDKEILKMALEKARRGRLYILSKMLE 537

Query: 237 VISNE 241
           VI   
Sbjct: 538 VIKEP 542



 Score = 88.2 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 87/226 (38%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R++ +    V++ A G+  VK+GDT +L TA       E +  +    ++       G +
Sbjct: 13  RKLLVQIGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEERLYSVGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R +R +         Q+I     +  D    
Sbjct: 73  P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQPE 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ VAL                     G   A++ G++ G  I++ ++ +     
Sbjct: 127 IVAMIGSSVALS-------------ISDIPFDGPTGAVAVGLVDGQFIINPNHEQREKSL 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    IV V+  A+     ++     +  A + I  +++
Sbjct: 174 MHLVVSGTKDA-IVMVEAGAKEVP--EETMLDAIMYAHEYIKQIVE 216


>gi|255349247|ref|ZP_05381254.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           70]
 gi|255503784|ref|ZP_05382174.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           70s]
          Length = 695

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 93/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKH 56
           +R+ GR   ++R IS+         GSCL   G+T    + T   E     +  +     
Sbjct: 314 IRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDGA 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +     G  G R     ++  +AL  V+  ++     I ++ 
Sbjct: 374 ARFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHVLPETSRFPYIIRLES 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++ +++G +  A++ G  +AL D                 +K  VA I+ G++       
Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGV-------------PIKAPVAGIAMGLILDRDQAI 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I   Q   +    +       L  AK   + ++ 
Sbjct: 477 ILSDISGIEDHLGDMDFKVAGTAKG-ITAFQMDIKIEGITHKIMEQALAQAKQGRSHILN 535

Query: 233 LQKDVISNE 241
           L   V+++ 
Sbjct: 536 LMTQVLASP 544



 Score = 82.4 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 86/235 (36%), Gaps = 33/235 (14%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
                +++ A G+ LVK  +T +      A+L E V        +     ++    R++G
Sbjct: 18  FETGKIARQASGAVLVKMNETWVFSSACAASLSEAVDFLPFRVDYQE---KFSSAGRTSG 74

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAA 129
             +KRE   GR   R   + R++ R+LR       +   Q++        DG T     A
Sbjct: 75  GFLKRE---GRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVW--SYDGKTLPDPLA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           I GA  AL                       VA +  G++ G  +++    E S   +D 
Sbjct: 130 ICGASAALA-------------ISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL---IKLQKDVISNE 241
               T S  ++ ++G       +++     +   +  IA +   I+  +  I  +
Sbjct: 177 VMAGTASA-VLMIEG--HCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQ 228


>gi|255317984|ref|ZP_05359230.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           6276s]
          Length = 695

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 93/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKH 56
           +R+ GR   ++R IS+         GSCL   G+T    + T   E     +  +     
Sbjct: 314 IRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDGA 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +     G  G R     ++  +AL  V+  ++     I ++ 
Sbjct: 374 ARFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHVLPETSRFPYIIRLES 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++ +++G +  A++ G  +AL D                 +K  VA I+ G++       
Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGV-------------PIKAPVAGIAMGLILDRDQAI 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I   Q   +    +       L  AK   + ++ 
Sbjct: 477 ILSDISGIEDHLGDMDFKVAGTAKG-ITAFQMDIKIEGITHKIMEQALAQAKQGRSHILN 535

Query: 233 LQKDVISNE 241
           L   V+++ 
Sbjct: 536 LMTQVLASP 544



 Score = 82.4 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 86/235 (36%), Gaps = 33/235 (14%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
                +++ A G+ LVK  +T +      A+L E V        +     ++    R++G
Sbjct: 18  FETGKIARQASGAVLVKMNETWVFSSACAASLSEAVDFLPFRVDYQE---KFSSAGRTSG 74

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAA 129
             +KRE   GR   R   + R++ R+LR       +   Q++        DG T     A
Sbjct: 75  GFLKRE---GRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVW--SYDGKTLPDPLA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           I GA  AL                       VA +  G++ G  +++    E S   +D 
Sbjct: 130 ICGASAALA-------------ISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL---IKLQKDVISNE 241
               T S  ++ ++G       +++     +   +  IA +   I+  +  I  +
Sbjct: 177 VMAGTASA-VLMIEG--HCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQ 228


>gi|15605577|ref|NP_220363.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           D/UW-3/CX]
 gi|81345334|sp|O84849|PNP_CHLTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|3329314|gb|AAC68439.1| Polyribonucleotide Nucleotidyltransferase [Chlamydia trachomatis
           D/UW-3/CX]
 gi|296436398|gb|ADH18572.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           G/9768]
 gi|296437329|gb|ADH19499.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           G/11222]
 gi|296438257|gb|ADH20418.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           G/11074]
 gi|297140758|gb|ADH97516.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           G/9301]
 gi|297748970|gb|ADI51516.1| Polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
           D-EC]
 gi|297749850|gb|ADI52528.1| Polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
           D-LC]
          Length = 695

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 93/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKH 56
           +R+ GR   ++R IS+         GSCL   G+T    + T   E     +  +     
Sbjct: 314 IRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDGA 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +     G  G R     ++  +AL  V+  ++     I ++ 
Sbjct: 374 ARFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHVLPETSRFPYIIRLES 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++ +++G +  A++ G  +AL D                 +K  VA I+ G++       
Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGV-------------PIKAPVAGIAMGLILDRDQAI 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I   Q   +    +       L  AK   + ++ 
Sbjct: 477 ILSDISGIEDHLGDMDFKVAGTAKG-ITAFQMDIKIEGITHKIMEQALAQAKQGRSHILN 535

Query: 233 LQKDVISNE 241
           L   V+++ 
Sbjct: 536 LMTQVLASP 544



 Score = 82.4 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 86/235 (36%), Gaps = 33/235 (14%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
                +++ A G+ LVK  +T +      A+L E V        +     ++    R++G
Sbjct: 18  FETGKIARQASGAVLVKMNETWVFSSACAASLSEAVDFLPFRVDYQE---KFSSAGRTSG 74

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAA 129
             +KRE   GR   R   + R++ R+LR       +   Q++        DG T     A
Sbjct: 75  GFLKRE---GRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVW--SYDGKTLPDPLA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           I GA  AL                       VA +  G++ G  +++    E S   +D 
Sbjct: 130 ICGASAALA-------------ISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL---IKLQKDVISNE 241
               T S  ++ ++G       +++     +   +  IA +   I+  +  I  +
Sbjct: 177 VMAGTASA-VLMIEG--HCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQ 228


>gi|255507465|ref|ZP_05383104.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           D(s)2923]
 gi|289525888|emb|CBJ15370.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
           Sweden2]
 gi|296435474|gb|ADH17652.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           E/150]
 gi|296439191|gb|ADH21344.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           E/11023]
          Length = 695

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 93/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKH 56
           +R+ GR   ++R IS+         GSCL   G+T    + T   E     +  +     
Sbjct: 314 IRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDGA 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +     G  G R     ++  +AL  V+  ++     I ++ 
Sbjct: 374 ARFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHVLPETSRFPYIIRLES 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++ +++G +  A++ G  +AL D                 +K  VA I+ G++       
Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGV-------------PIKAPVAGIAMGLILDRDQAI 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I   Q   +    +       L  AK   + ++ 
Sbjct: 477 ILSDISGIEDHLGDMDFKVAGTAKG-ITAFQMDIKIEGITHKIMEQALAQAKQGRSHILN 535

Query: 233 LQKDVISNE 241
           L   V+++ 
Sbjct: 536 LMTQVLASP 544



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 86/235 (36%), Gaps = 33/235 (14%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
                +++ A G+ LVK  +T +      A+L E V        +     ++    R++G
Sbjct: 18  FETGKIARQASGAVLVKMNETWVFSSACAASLSEAVDFLPFRVDYQE---KFSSAGRTSG 74

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAA 129
             +KRE   GR   R   + R++ R+LR       +   Q++        DG T     A
Sbjct: 75  GFLKRE---GRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVW--SYDGKTLPDPLA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           I GA  AL                       VA +  G++ G  +++    E S   +D 
Sbjct: 130 ICGASAALA-------------ISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASRLDL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL---IKLQKDVISNE 241
               T S  ++ ++G       +++     +   +  IA +   I+  +  I  +
Sbjct: 177 VMAGTASA-VLMIEG--HCDFLTEEQVLEAIVFGQTYIAKICDAIEAWQKAIGKQ 228


>gi|315658436|ref|ZP_07911308.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           lugdunensis M23590]
 gi|315496765|gb|EFU85088.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           lugdunensis M23590]
          Length = 698

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 90/235 (38%), Gaps = 28/235 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +   A GS L   G T  L+     A  + ++   +   + 
Sbjct: 318 IRPDGRKPDEIRPLESEVGILPRAHGSGLFTRGQTQALSVLTLGALGDYQIIDGLGPEQE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIID 115
                 Y     S G      A   R+ G       +  RALR ++ D S      I I 
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALRHIIPDTSKFP-YTIRIV 432

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            +V++++G +  A+I G+ +AL D                 +K  VA I+ G++      
Sbjct: 433 SEVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSY 479

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             + D+   ED+  D+D     T  G I  +Q   +    +++     L  A+  
Sbjct: 480 TILTDIQGMEDALGDMDFKVAGTKDG-ITAIQMDIKIDGLTREVIEEALEQARKG 533



 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 28/232 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ LV++GDT +L+TA           +     +       G +P
Sbjct: 15  RSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDGDFFPLTVNYEEKMYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR G  +    R+I R +R +         QI+        D     
Sbjct: 75  ---GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYKHDVQIMNIVLSADPDCSPEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  +++    +     +
Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYVDGKYVINPTLEQKEQSRL 175

Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D       D+ ++VE    A  +  ++      +    D I  L++ Q+ ++
Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITEQEMLEAIFFGHDEIKRLVEFQQQIV 223


>gi|94469342|gb|ABF18520.1| exosomal 3'-5' exoribonuclease complex subunit Rrp41-like protein
           [Aedes aegypti]
          Length = 307

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 18/184 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR++N+ R+  +   V   A+GS  ++ G+T ++ +     ++P   +    G +  
Sbjct: 42  RKCGRKDNESRKYFMKLGVVSTAKGSTYLELGNTKVIVSVFDPREIPKQNKFRALGELYC 101

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           ++   P +  +R   +  +     RS  +   + +AL+ VV      + QI I  +V++ 
Sbjct: 102 DFKFSPFACIHRKNPQTDA---EERS--LAAAMTKALQPVVCRHLFPNFQIDIFANVLED 156

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DG    A IT A +AL D    M D              V A +  ++     +D    E
Sbjct: 157 DGSVLAAVITAAGLALSDATISMFDI-------------VTASTVAVIEDKIYLDPTLAE 203

Query: 182 DSTI 185
           +   
Sbjct: 204 ERLC 207


>gi|329766295|ref|ZP_08257842.1| exosome complex RNA-binding protein Rrp42 [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137197|gb|EGG41486.1| exosome complex RNA-binding protein Rrp42 [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 271

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 91/251 (36%), Gaps = 22/251 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  ++ R++ +       A GS  V+ GD+ ++    ++   P +      G    
Sbjct: 24  RVDGRALDEPRQLVIEVNAIPKANGSARVRLGDSEVVCGVKIQPDRP-FPDMGDKGIFIC 82

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQIIID 115
              +LP S  +       +G  G    E+ R++ R +R   ++DLS L        + + 
Sbjct: 83  TAELLPLSHPS-----VETGPPGPDVIELARVVDRGIRESHMIDLSQLVIEKNKSVVGVF 137

Query: 116 CD--VIQADGGTRTAAITGAWVALHDCLQHMEDCSN-------KFQLSQVLKGHVAAISC 166
            D  V+  DG    A    A  AL        +  N         +    +     +++ 
Sbjct: 138 ADNVVVDYDGNLFDACAYAATAALLSSKSPKWEMQNDVPTLVEGGESEVPITTIPVSVTM 197

Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           G +  + IVD +  E  ++D         +G+I  +Q       FS +       L+   
Sbjct: 198 GKIGNHIIVDPNGDEWDSMDARITITTDSNGNICALQKGGIGG-FSFEEVIKCGELSVKV 256

Query: 227 IADLIKLQKDV 237
            + + +  K  
Sbjct: 257 GSKIREKLKQA 267


>gi|284108781|ref|ZP_06386446.1| polyribonucleotide nucleotidyltransferase [Candidatus Poribacteria
           sp. WGA-A3]
 gi|283829855|gb|EFC34146.1| polyribonucleotide nucleotidyltransferase [Candidatus Poribacteria
           sp. WGA-A3]
          Length = 700

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 93/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R  GR  + +R I+    +     GS L   G+T  L   TL         +   G   
Sbjct: 311 VRADGRGASDIRPITCETSILPRTHGSALFTRGETQSLAVVTLGTSDDEQRIDALEGEYF 370

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      +   R+ G      ++  RAL+SV+         I I  
Sbjct: 371 RNFMLHYNFPPFSVGEARPLRSPGRREVGHG----KLAERALKSVLPDKEAFPYTIRIVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIV 175
           D+++++G +  A + G  +A+ D                 +K  VA I+ G++  G  ++
Sbjct: 427 DILESNGSSSMATVCGGTLAMMDAGV-------------PIKKPVAGIAMGLIKDGDRVL 473

Query: 176 ---DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
              D+   ED   D+D     T  G I  +Q   +    + D     L  A+     +++
Sbjct: 474 ILSDILGLEDHLGDMDFKVTGTQEG-ITALQMDIKIEGITIDLMRQALEQARAGRIHILE 532

Query: 233 LQKDVISNE 241
             ++ +S+ 
Sbjct: 533 KMQESLSSP 541



 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 76/227 (33%), Gaps = 29/227 (12%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + L        A+G+ L  +GDT +L TA     L+  V        +       G +
Sbjct: 12  RTMRLETGRMAKLADGAVLASYGDTMVLATAVSSKILKPDVDFLPLTVNYLEKAYSAGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G    +     R+I R +R ++        Q+I     +     + 
Sbjct: 72  P---GGYFKRE---GAPSEKETLTSRLIDRPIRPLIPKGFSYETQVIASVLSVDQSMTSE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              IT A  AL                     G +A +  G + G  +V+ +  E    +
Sbjct: 126 VVGITAASAALA-------------ISDIPFGGPLAGVKIGRVNGQFVVNPNMQELQNSE 172

Query: 187 VDANFVMTDSGHIVEVQGSAERAT-FSQDHFFAMLNLAKDRIADLIK 232
           ++     T+      +Q     A   S+  F   L LA   I  ++ 
Sbjct: 173 LELVVAGTED----AIQMVESGANGLSESVFLDALALAHSEIKKIVA 215


>gi|308272445|emb|CBX29049.1| Polyribonucleotide nucleotidyltransferase [uncultured
           Desulfobacterium sp.]
          Length = 697

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 86/248 (34%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR+ +++R I+    +     GS L   G+T +L   TL          T  G    
Sbjct: 312 RIDGRKFDEIRPITCEVGLLPRPHGSALFTRGETQVLAVLTLGSGPDEQRVETLSGEELR 371

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G    R      +  RA+  ++         I +  +
Sbjct: 372 PFMLHYNFPPYSVGETKR----LGGPSRRDIGHGGLSTRAIERILPPKEEFDYTIRLVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           V++++G +    +    +AL D                 +K  V+ I+ G++        
Sbjct: 428 VLESNGSSSMGTVCSGAMALMD-------------GGVPIKSPVSGIAMGLVKEGDQVVI 474

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED + D+D     T  G I  +Q   +     +      L  A+     +++ 
Sbjct: 475 LSDILGDEDHSGDMDFKVTGTRDG-ITALQMDIKIHELPRTILENALEQARTGRIFILEK 533

Query: 234 QKDVISNE 241
             + IS  
Sbjct: 534 MLEAISQP 541



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 80/226 (35%), Gaps = 27/226 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRS 69
           +++      K A GS  V++GDT +L TA     E        + ++       G +P  
Sbjct: 14  LTIQAGKLAKQASGSVTVQYGDTVVLVTAVSSYEERPGDFLPLSVEYQEKIYAAGRIP-- 71

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            GN  +RE   GR   +     R+I R +R +         Q+I     +  +      A
Sbjct: 72  -GNYFRREI--GRPSEKETLTSRLIDRPIRPLFPKGYSCEIQVIATVLSMDHENDPDILA 128

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + GA  AL                     G VA++      G  IV+    E      D 
Sbjct: 129 MIGASAAL-------------EISDIPFAGPVASVRVIRKEGQLIVNPTIQE--CEGSDI 173

Query: 190 NFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           N ++  S   +V V+G +     S+      +    + +  +I +Q
Sbjct: 174 NIIIAGSKTGVVMVEGGS--NMVSEKDMLEAIFYGHEAMQPIIDIQ 217


>gi|157114057|ref|XP_001657962.1| hypothetical protein AaeL_AAEL006697 [Aedes aegypti]
 gi|108877466|gb|EAT41691.1| conserved hypothetical protein [Aedes aegypti]
          Length = 307

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 18/184 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR++N+ R+  +   V   A+GS  ++ G+T ++ +     ++P   +    G +  
Sbjct: 42  RKCGRKDNESRKYFMKLGVVSTAKGSTYLELGNTKVIVSVFDPREIPKQNKFRALGELYC 101

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           ++   P +  +R   +  +     RS  +   + +AL+ VV      + QI I  +V++ 
Sbjct: 102 DFKFSPFACIHRKNPQTDA---EERS--LAAAMTKALQPVVCRHLFPNFQIDIFANVLED 156

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DG    A IT A +AL D    M D              V A +  ++     +D    E
Sbjct: 157 DGSVLAAVITAAGLALSDATISMFDI-------------VTASTVAVIEDKIYLDPTLAE 203

Query: 182 DSTI 185
           +   
Sbjct: 204 ERLC 207


>gi|154174457|ref|YP_001407821.1| polynucleotide phosphorylase/polyadenylase [Campylobacter curvus
           525.92]
 gi|187470952|sp|A7GX79|PNP_CAMC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|112802675|gb|EAU00019.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Campylobacter
           curvus 525.92]
          Length = 735

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 88/243 (36%), Gaps = 22/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNT 54
           +R  GR  +++R IS+   V   A GSCL   G T  L  ATL       +      +  
Sbjct: 343 VRADGRALDEVRPISIETNVLPNAHGSCLFTRGQTQALVVATLGTDGDAQMYDILTEKTA 402

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y     S G     +A   R+ G       +  RAL   +D+++     I +
Sbjct: 403 LIEKFMFNYNFPGFSVGEASPLKAPGRRELGHG----NLAKRALAPSIDINS--PYTIRL 456

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++++++G +  A++ G  +AL       +       +  + +G   A+         +
Sbjct: 457 VSEILESNGSSSMASVCGGALALRAAGVDTQKLVAGVAMGLIFEGDKHAV---------L 507

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED   D+D     +  G I  +Q   +    S +     L  AK     ++ L 
Sbjct: 508 TDIMGLEDHDGDMDFKVAGSSDG-ITALQMDIKLGGISLEVLKEALYQAKRGREHILNLM 566

Query: 235 KDV 237
              
Sbjct: 567 HQA 569



 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 69/190 (36%), Gaps = 27/190 (14%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
           V+K A G+ +++  +T +L T     ++ +        ++       G +P   G  VKR
Sbjct: 19  VAKQAAGAVMLRVKNTVVLATVARDDVQVEEDFLPLTVQYIEKAYAAGRIP---GGYVKR 75

Query: 77  EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAW 134
           E    + G       R+I R+LR +         QI++   V+ AD     +   +  A 
Sbjct: 76  ET---KPGDFETLTARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPEVDLQVVGLNAAS 130

Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT 194
           VAL+                  +   V  +  G +    +++    E  +  +D     T
Sbjct: 131 VALY-------------LSDIPVNRPVCGVRVGYIDDKFVINPSNSELKSSALDLYVAGT 177

Query: 195 DSGHIVEVQG 204
               ++ ++ 
Sbjct: 178 KD-ELLMIEM 186


>gi|116626786|ref|YP_828942.1| polynucleotide phosphorylase/polyadenylase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|122251352|sp|Q01NW3|PNP_SOLUE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116229948|gb|ABJ88657.1| 3' exoribonuclease [Candidatus Solibacter usitatus Ellin6076]
          Length = 701

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 88/244 (36%), Gaps = 19/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R  GR+ +Q+R+I++   V     GS L   G+T  L T TL     E+++ +       
Sbjct: 311 RPDGREFDQIRQITIETGVLPRVHGSTLFTRGETQALVTVTLGTKDDEQRIELLEPGEAS 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G          R+ G       +  RAL +++         + +  
Sbjct: 371 KRFMLHYNFPPFSVGEVGFMRGAGRREIGHG----ALAERALTALIPGEDKFPYTMRVVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           D ++++G +  AAI G  +AL      M        +  V++G   AI         + D
Sbjct: 427 DTLESNGSSSMAAICGGSLALMQAGVPMTAHVGGVAMGLVMEGKDYAI---------LTD 477

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I  +Q   +    +       L  A+     ++    +
Sbjct: 478 IAGAEDHYGDMDFKVAGTRDG-ITGMQMDIKVPNITTAIMKEALEQARRGRLFILDKMYE 536

Query: 237 VISN 240
            +  
Sbjct: 537 AMPQ 540



 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 83/235 (35%), Gaps = 34/235 (14%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66
           R+I+L      K A G+ +V+ GD  +L TA + ++       +     +   T   G +
Sbjct: 12  RKITLETGKMAKQANGAVVVRSGDAVVLVTACMADQPKPSAGFFPLTVDYREYTYAAGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   +     R+I R +R +     +   QII        +    
Sbjct: 72  P---GGFIKRE---GRLSEKEVLTCRLIDRPIRPLFPEGFMNETQIIAMVLSADPEQDPN 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
           + AI G   AL                    +  +A +  GM  G    +  Y E     
Sbjct: 126 SLAIVGTAAALA-------------ISDIPFQYVMAGVRVGMRDGQYTANPTYTEGRASK 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD-------RIADLIKLQ 234
           ++     T+ G IV V+  A+    S+      +    +        I  L+KL 
Sbjct: 173 LNIVVAGTEEG-IVMVEAGAQE--VSEAEVLGAIEFGHECCKKIAAGIRQLMKLC 224


>gi|189424733|ref|YP_001951910.1| polynucleotide phosphorylase/polyadenylase [Geobacter lovleyi SZ]
 gi|257096692|sp|B3EAF2|PNP_GEOLS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189420992|gb|ACD95390.1| Polyribonucleotide nucleotidyltransferase [Geobacter lovleyi SZ]
          Length = 703

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR    +R I++   +   A GS L   G+T +L  ATL         ++ +G   
Sbjct: 314 IRIDGRDTKTVRPIAIEAGLLPRAHGSTLFTRGETQVLAAATLGTSQDEQRMDSLYGEYR 373

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G    R A   R+ G       +  RA+ +++         I I  
Sbjct: 374 KKFMLHYNFPPFSVGETSFRLAPGRREIGHGM----LAERAISAILPNHDDFPYTIRIVA 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY--- 172
           + ++++G +  A + G  ++L D                 +K  VA I+ G++  G    
Sbjct: 430 ETLESNGSSSMATVCGGCLSLMDAGV-------------PVKAPVAGIAMGLIKEGEKVA 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     +  G +  +Q   +    S++     L  AK+    ++ 
Sbjct: 477 ILTDILGDEDHLGDMDFKVAGSADG-VTALQMDIKIGGVSKEIMQQALKQAKEGRLHILG 535

Query: 233 LQKDVIS 239
                ++
Sbjct: 536 KMAQCLA 542



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 86/235 (36%), Gaps = 28/235 (11%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
            + ++     K A G+ ++  GDT +L T    ++            +T  Y     + G
Sbjct: 16  NVKISTGKMAKQASGAVVISSGDTMVLVTVVGTKEAKP---GQDFFPLTVNYTEKTYAGG 72

Query: 72  ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
               +  KRE   GR       I R+I R +R +   S L   Q++      + D     
Sbjct: 73  KIPGSFFKRE---GRPSEDETLICRLIDRPIRPLFPESYLCDTQVMATVISAEEDHDPAI 129

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            ++ GA  AL                    +G +A +  G + G  I +    +    D+
Sbjct: 130 LSMIGASAAL-------------MISDIPFEGPIAGVKVGRVDGKLIANPSAEQLKLSDL 176

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           +   V      I  V+G  E    S++     +  AKD +  ++  Q++ ++ +V
Sbjct: 177 EI-VVAAGKDAIFMVEG--EADFVSEEDLLEAVFFAKDAVQGILAAQEE-LARQV 227


>gi|297569830|ref|YP_003691174.1| polyribonucleotide nucleotidyltransferase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925745|gb|ADH86555.1| polyribonucleotide nucleotidyltransferase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 704

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 98/244 (40%), Gaps = 20/244 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+  R+ +++R I+    V     GS L   G+T +L +ATL          +  G   
Sbjct: 320 IRIDNRRLDEVRNITNEVGVLPRVHGSSLFTRGETQVLVSATLGSGEDEQRIESLSGMSF 379

Query: 59  --ITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                 Y   P   G  R  R         R      +  RA+++V+  +      I + 
Sbjct: 380 KPFMLHYNFPPYCVGEVRFLRG-----PSRRDIGHGALAERAVQAVLPDAESFPYTIRVV 434

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            +V++++G +  A + GA ++L D    M+   +   +  + +G   AI         + 
Sbjct: 435 SEVLESNGSSSMATVCGASLSLMDAGVPMKKPVSGIAMGLIKEGDDIAI---------LS 485

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T+ G I  +Q   +    S++   A LN A++    ++   K
Sbjct: 486 DILGDEDHLGDMDFKVAGTEDG-ITALQMDIKLEGVSREIMSAALNQAREGRLHILGKMK 544

Query: 236 DVIS 239
           + I+
Sbjct: 545 EAIA 548



 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 88/230 (38%), Gaps = 26/230 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R++++    ++K A GS LV +G + +L TAT   +      N     +T EY     + 
Sbjct: 12  RKLTIETGRLAKQAGGSVLVTYGQSVVLVTATAAREP---KENIDFLPLTIEYQERFYAV 68

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G    +  +RE   GR         R+I R LR +         QII        +    
Sbjct: 69  GRIPGSFFRREI--GRPTENETLACRIIDRPLRPLFAQGYQHETQIIATVLSADQENDPD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                     G +A +  GM+ G  +++    +     
Sbjct: 127 LMAMLGASAALS-------------VSQVPFLGPIAGVRVGMIDGQYVLNPSQEQRKNSR 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D   V      +V V+G A+  + S++     +  A + +  L+ +QK+
Sbjct: 174 LDL-IVAGSEKAVVMVEGGAD--SLSEEEVKNGIFFAHESLQPLLAMQKE 220


>gi|325982016|ref|YP_004294418.1| polyribonucleotide nucleotidyltransferase [Nitrosomonas sp. AL212]
 gi|325531535|gb|ADZ26256.1| Polyribonucleotide nucleotidyltransferase [Nitrosomonas sp. AL212]
          Length = 709

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I++   V     GS L   G+T  L  ATL         ++  G    
Sbjct: 315 RIDGRGTRTVRAITIRNGVLPRTHGSALFTRGETQALAIATLGTARDEQKIDSLQGDYNE 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +      R+ G      R+  RAL +V+         + +  +
Sbjct: 375 RFILHYNMPPYATGEIGRVGTPKRREIGHG----RLAKRALVAVLPPPEEFGYSLRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++    +AL D                 LK HVA I+ G++        
Sbjct: 431 ITESNGSSSMASVCSGCLALMDAGV-------------PLKAHVAGIAMGLIKDGNRFAV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   +    +++   A L  A +    ++++
Sbjct: 478 LTDILGDEDHLGDMDFKVAGTEKG-ITALQMDIKIQGITKEIMHAALIQAHEGRMHILQI 536

Query: 234 QKDVISN 240
            K  + +
Sbjct: 537 MKQALPS 543



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 53/166 (31%), Gaps = 19/166 (11%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  KRE   GR   +     R+I R +R +         QI+        +      +I
Sbjct: 74  GSFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFYNEVQIVATVMSADNEIDPDIPSI 130

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            G   AL                     G + A   G +    +++    E    D   N
Sbjct: 131 IGTSAALTLSGI-------------PFDGPLGAARVGYINNEYVLNPTTSE--LKDTQLN 175

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            V+  + H V +  S E    S++     +    +++  +I    +
Sbjct: 176 LVVAGTQHAVLMVES-EAIELSEEVMLGAVTYGHEQMQIVIDAINE 220


>gi|114332122|ref|YP_748344.1| polynucleotide phosphorylase/polyadenylase [Nitrosomonas eutropha
           C91]
 gi|122313196|sp|Q0AE53|PNP_NITEC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|114309136|gb|ABI60379.1| 3' exoribonuclease [Nitrosomonas eutropha C91]
          Length = 705

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 94/245 (38%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I++   V     GS L   G+T  L   TL         +   G    
Sbjct: 315 RIDGRGTRTVRPITIRHGVLPRTHGSALFTRGETQALVVTTLGTARDEQKIDALQGDYSE 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL +V+         + +  +
Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALLAVLPPVEEFGYAMRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           V +++G +  A++ G  +AL D                 LK HVA I+ G++        
Sbjct: 431 VTESNGSSSMASVCGGCLALMDAGA-------------PLKAHVAGIAMGLIKEGNRFAV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   +    +++     L  AK+    ++ +
Sbjct: 478 LTDILGDEDHLGDMDFKVAGTEEG-ITALQMDIKIQGITKEIMQVALLQAKEGRLHILDI 536

Query: 234 QKDVI 238
            K  +
Sbjct: 537 MKQSL 541



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 77/241 (31%), Gaps = 44/241 (18%)

Query: 14  ISLTRR-VSKYAEGSCLVKF----------GD--THLLTTATLEEKVPMWIRNTKHGWIT 60
           +++    ++K A G+ +V            GD  T              +     +    
Sbjct: 15  LTIETGEIAKQAHGAVMVSMDDTVVLVTVVGDKKTK--------PGQDFFPLTVDYQEKF 66

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
              G +P   G+  KRE   GR   +     R+I R +R +         Q+I       
Sbjct: 67  YSAGRIP---GSFFKRE---GRPSEKEILTSRLIDRPIRPLFPDGFYNEVQVIAMVLSSD 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           A+      A  GA  AL                     G + A   G +    +++    
Sbjct: 121 AEIDADIPATIGASAALILSGI-------------PFDGPIGAARVGYIDNEYVLNPTTT 167

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           + +      N V+  +   V +  S E    S+D     +    D++  +I +  + +++
Sbjct: 168 QLNKSQ--LNLVVAGTQKAVLMVES-EANELSEDVMLGAVTYGHDQMQQVINMINE-LAD 223

Query: 241 E 241
           E
Sbjct: 224 E 224


>gi|319944048|ref|ZP_08018328.1| polyribonucleotide nucleotidyltransferase [Lautropia mirabilis ATCC
           51599]
 gi|319742809|gb|EFV95216.1| polyribonucleotide nucleotidyltransferase [Lautropia mirabilis ATCC
           51599]
          Length = 704

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 99/241 (41%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R IS+   V   A GS L   G+T  L  ATL    +E++   I      
Sbjct: 315 RIDGRDTRTVRPISIRTGVLPRAHGSALFTRGETQALVVATLGTARDEQIIDAITGEYRE 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
               +Y M P +TG   +      R+ G      R+  RA+ ++V      +  I +  +
Sbjct: 375 RFMMQYNMPPYATGETGRIGTPKRREVGHG----RLAKRAITALVPSQEDFAYSIRLVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    +E       +  + +G+  A+         + D+
Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVERHVAGIAMGLIKEGNKFAV---------LTDI 481

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G +  +Q   +    +++     L  A++    ++   ++ 
Sbjct: 482 LGDEDHLGDMDFKVAGTEQG-VTALQMDIKIQGITREIMQVALAQAREARMHILGKMQEA 540

Query: 238 I 238
           I
Sbjct: 541 I 541



 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 83/235 (35%), Gaps = 35/235 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A GS LV   DT +L T       +     +     +       G +P 
Sbjct: 16  VTLETGEIARQASGSVLVTIDDTMVLATVVAAREPKPGQSFFPLTVDYFEKFYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV----IQADGG 124
             G   KRE   GR   +     R+I R +R +     +   Q+++        I AD  
Sbjct: 75  --GGFFKRE---GRPTEKETLTARLIDRPIRPLFPEGFMNEVQVVLTVLSSNPEIDAD-- 127

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+ GA  AL                     G V A   G + G  +++    +   
Sbjct: 128 --IPAMIGASAALA-------------ISGVPFNGPVGAARVGYIDGQYVLNPSASQLKE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
             +D     TD   ++     +E +  S+D     +    +++  +I+  ++++ 
Sbjct: 173 SKLDLVVAGTDQAVLMV---ESEASELSEDVMLGAVVFGHEQMQTVIQAIEELVE 224


>gi|307297863|ref|ZP_07577669.1| polyribonucleotide nucleotidyltransferase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306917123|gb|EFN47505.1| polyribonucleotide nucleotidyltransferase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 730

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 96/249 (38%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH----LLTTATLEEKVPMWIRNTKH 56
           +R+ GR+ N++R I++   +   A GS L   G+T     +   AT++E++   +     
Sbjct: 322 VRMDGRKHNEIRPINIELDLLPRAHGSALFTRGETQSLGIVTLGATMDEQIVDTMFEEGS 381

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +      R+ G       +  R+L+++V         I +  
Sbjct: 382 KSFMLHYNFPPFSTGEVKRLRGPGRREIGHGH----LAERSLKNIVPNGESFPYTIRVVS 437

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A +    ++L      ME              HVA ++ GM+       
Sbjct: 438 EVLESNGSSSMATVCSGSLSLMAAGVPMEK-------------HVAGVAMGMIQEPEKTV 484

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I   Q   + +  S +     L  A+     ++ 
Sbjct: 485 VLTDILGNEDHMGDMDFKVTGTRDG-ITAFQMDVKVSGVSSEIMTKALEQARLARLKILD 543

Query: 233 LQKDVISNE 241
           L  + I   
Sbjct: 544 LMYEAIPEP 552



 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 90/238 (37%), Gaps = 37/238 (15%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWITAEY------- 63
           ++ +      K A+G+ ++++ D+ LLTT    E+ VP     T    +T EY       
Sbjct: 14  KLVIENGKMAKQADGAVVLRYADSVLLTTVNGNEQAVP----GTDFLPLTVEYQEKFYAA 69

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           G +P   G  +KRE+   R    +    R+I R +R +         Q+I+       D 
Sbjct: 70  GKIP---GGFLKRES---RPSDNAVLSARIIDRPIRPLFPDGMRNEIQVIVTVLSADPDN 123

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
                 I  + + L+                   +G VA +  G + G  +V     E  
Sbjct: 124 PPDIWGIMASSLVLN-------------ISPIPFEGIVAGVQVGYVDGKYVVFPSADELE 170

Query: 184 TIDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             ++D     T+    +VE     E    S++     L  A + I  L+  QK++IS 
Sbjct: 171 RSELDIVVAGTEDAVAMVE----GEAKEVSEEVMVGALEAAHEAIKSLVAFQKEIISE 224


>gi|261416773|ref|YP_003250456.1| polyribonucleotide nucleotidyltransferase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373229|gb|ACX75974.1| polyribonucleotide nucleotidyltransferase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327483|gb|ADL26684.1| polyribonucleotide nucleotidyltransferase [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 744

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 90/240 (37%), Gaps = 33/240 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKH 56
           +RL GR   ++R I +   V   A GS + + G+T   ++ T   +     +  ++    
Sbjct: 338 VRLDGRTTTEVRPIEIEMGVLPRAHGSAIFQRGETQGLVICTLGTKADEQRFESLQGEGA 397

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   K+  +S R+ G       +  R+L +V+ L       I +  
Sbjct: 398 KSYMLHYNFPPFSVGE-CKKLGLSRREIGHGH----LAERSLAAVLPLPEDFPYTIRVVS 452

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171
           ++++++G +  A++ G  ++L D                 +K  VA I+ G++       
Sbjct: 453 EIMESNGSSSMASVCGGCLSLMDAGV-------------PIKAPVAGIAMGLISEKGSVK 499

Query: 172 -----YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                  + D+   ED   D+D     T  G I   Q   +    + +     L  A+  
Sbjct: 500 EGGKIKILSDITGTEDHLGDMDFKVTGTAEG-ITAFQMDIKIRGITPELMREALEQARQG 558



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 92/241 (38%), Gaps = 34/241 (14%)

Query: 3   LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTA-TLEEK-VPMWIRNTKHGWI 59
             GR       I+     ++K A GS + K GD  +L+T    EEK    +    ++   
Sbjct: 24  PDGRV------ITFETGRIAKQARGSAVAKMGDAFVLSTVCYGEEKDGDFFPLTVEYREK 77

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           +   G LP   G   KRE   GR         R+I R +R +   +     Q+I+   V+
Sbjct: 78  SYAAGRLP---GGYSKRE--PGRPSDEEILSARIIDRPIRPMFPENFTREVQVIV--QVL 130

Query: 120 QADG--GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
            +D         ++ A +++                    +  VAA+   ++ G  IV  
Sbjct: 131 SSDKKFAPDVLGVSAASLSI-------------GLSELPFEQQVAAVRVAVVDGQNIVMP 177

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            Y + +  D+D     T+   +  V+G A     S+D     +    + I  + K Q+++
Sbjct: 178 TYDQVAVADLDLVVAGTED-SVCMVEGGAYE--VSEDTMIGAILAGHEVIKQMCKAQQEL 234

Query: 238 I 238
           +
Sbjct: 235 V 235


>gi|71649471|ref|XP_813459.1| exosome complex exonuclease RRP41A [Trypanosoma cruzi strain CL
           Brener]
 gi|70878342|gb|EAN91608.1| exosome complex exonuclease RRP41A, putative [Trypanosoma cruzi]
          Length = 195

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 18/182 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59
           +RL GR+  + R ++L        +G C V  G   +  +     +V   + +      I
Sbjct: 13  LRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLATVCASVYGPREVTNRLESKYNECII 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           T E  +   +   R        R+   S+E+   +    RSVV LS   + QI I  +V+
Sbjct: 73  TCEVAIAAFAGEKRR----APQRRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHICVEVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           + DG  + A I  A +AL D    M D              V A + G++    +VDL  
Sbjct: 129 RQDGSDKAACINAACLALVDASVAMRDI-------------VYAQTVGLINAVDVVDLTT 175

Query: 180 GE 181
            E
Sbjct: 176 EE 177


>gi|85712994|ref|ZP_01044032.1| Polynucleotide phosphorylase [Idiomarina baltica OS145]
 gi|85693163|gb|EAQ31123.1| Polynucleotide phosphorylase [Idiomarina baltica OS145]
          Length = 713

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  + +R IS+   V     GS L   G+T  L TATL       + +   G  T+
Sbjct: 314 RIDGRDPDMVRAISVATGVLPRTHGSALFTRGETQALVTATLGTDRDAQMIDELTGTSTS 373

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      A   R+ G      R+  R +++V+         + +  +
Sbjct: 374 RFLLHYNFPPYCVGETGMVGAPKRREIGHG----RLAKRGIQAVMPSHEEFPYTVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G+ +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGSSLALMDAGV-------------PIKSSVAGIAMGLVKEGDKHVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D      + G I  +Q   +    ++D   + L  AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGNNEG-ITALQMDIKIDGITRDIMESALGQAKAARLHILSV 535

Query: 234 QKDVISNE 241
             + I   
Sbjct: 536 MDEAIGEH 543



 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 70/228 (30%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +    DT +L +        E    +     +   T   G +P 
Sbjct: 15  VTLETGVVARQATAAVMASMDDTTVLVSVVAKKEAREGQDFFPLTVNYQEKTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +     +   Q++     +         
Sbjct: 74  --GGFFKRE---GRPSENETLTSRLIDRPIRPLFPEGFMNEVQVVATVVSVNPQVSPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G   AL                     G + A   G++    +++    E +   +D
Sbjct: 129 AMIGTSAALA-------------ISGVPFNGPIGAARVGVINDEYVLNPTQDELTESKLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T    ++     +E    S+D     +    + +  +I    +
Sbjct: 176 LVVAGTQQAVLMV---ESEANLLSEDTMLGAVMFGHESMQVVIDAINE 220


>gi|296330884|ref|ZP_06873359.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305674402|ref|YP_003866074.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296151889|gb|EFG92763.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305412646|gb|ADM37765.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 705

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 89/248 (35%), Gaps = 26/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR  +Q+R +S    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G            G R      +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPQFSVGE----TGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKSGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     TD G +  +Q   +    S++     L  AK    +++ 
Sbjct: 478 VLTDIQGMEDALGDMDFKVAGTDKG-VTALQMDIKIEGLSREILEEALQQAKKGRMEILN 536

Query: 233 LQKDVISN 240
                +S 
Sbjct: 537 SMLATLSE 544



 Score = 85.9 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 94/232 (40%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ ++++GDT +L   TA+ E K +  +     +       G +P
Sbjct: 15  RTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q+I     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G +    I++    +    D+
Sbjct: 129 AAMFGSSLALS-------------VSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+     ++     +    + I  LI  Q+++++
Sbjct: 176 NLVVAGTKDA-INMVEAGADEVP--EETMLEAIMFGHEEIKRLIAFQEEIVA 224


>gi|302392342|ref|YP_003828162.1| polyribonucleotide nucleotidyltransferase [Acetohalobium arabaticum
           DSM 5501]
 gi|302204419|gb|ADL13097.1| polyribonucleotide nucleotidyltransferase [Acetohalobium arabaticum
           DSM 5501]
          Length = 708

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 96/234 (41%), Gaps = 29/234 (12%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           RE++L      + A GS LV++G+T +L TAT+++      R   +  +   Y     S 
Sbjct: 13  RELTLETGKLAQQANGSVLVRYGETVILVTATMDDP-----RGMDYFPLMINYEERLYSV 67

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G      +KRE   GR    +    R+I R LR +         Q+I     +  D    
Sbjct: 68  GKIPGGFIKRE---GRPSEAATLTSRLIDRPLRPLFPEGMRHDVQVIATVLSVDNDNSPE 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA  AL                    +G +  ++ G++ G  I++    E     
Sbjct: 125 VAAMIGASAALS-------------ISDIPFEGPIGGVNVGLVDGELILNPTVEEQEESS 171

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +D   V  +   ++ V+ +A     ++D     ++    ++  +IKLQ+++++ 
Sbjct: 172 LDL-IVAGNKDGVMMVESAANE--VTEDKMIEAIDYGHQKLQGIIKLQEEMVAK 222



 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 88/241 (36%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           R+ GR  +++R I     V   A GS +   G T ++T AT     +E+    I   +  
Sbjct: 318 RVDGRDLDEVRPIWCEVDVLPRAHGSGIFTRGQTQVMTVATLGAVGDEQRLDGIEVKESK 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G            G R      +  RALR ++         I +  +
Sbjct: 378 RYMHHYNFPSFSVGE----TGPIRGPGRREIGHGALGERALRPMIPEHDDFPYTIRLVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V++++G T  A+I G+ ++L D    +        +  + KG              + D+
Sbjct: 434 VLESNGSTSQASICGSTLSLMDAGVPIRKPVAGIAMGLMKKGDKV---------EVLSDI 484

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     ++ G I  +Q   +    S+D     L  A+     ++    +V
Sbjct: 485 QGIEDFNGDMDFKVAGSEDG-ITALQMDVKIKGISKDILAEALEQARQGRLHILDKMLEV 543

Query: 238 I 238
           +
Sbjct: 544 M 544


>gi|260655007|ref|ZP_05860495.1| polyribonucleotide nucleotidyltransferase [Jonquetella anthropi
           E3_33 E1]
 gi|260630322|gb|EEX48516.1| polyribonucleotide nucleotidyltransferase [Jonquetella anthropi
           E3_33 E1]
          Length = 756

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 95/253 (37%), Gaps = 30/253 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL------EEKVPMWIRNT 54
           +R  GR  +Q+R IS    +     GS L   G+T  L TATL      ++ +     N 
Sbjct: 311 VRADGRATDQIRPISCEIGLLPRVHGSALFTRGETMSLATATLGMLGEDDQMMDGLKHNE 370

Query: 55  KHGWITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            +      Y   P S G  R  R       G R      +  RAL  ++         + 
Sbjct: 371 PNKRFLLHYNFPPFSVGEVRPMRG-----PGRREIGHGALAERALAPIIPSEEDFPYVVR 425

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-- 171
           +  D+++++G +  A+I G  +AL                   +K HVA I+ G++    
Sbjct: 426 VVSDILESNGSSSQASICGGSLALMAAGV-------------PVKCHVAGIAMGLIKEGD 472

Query: 172 --YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED   D+D     T  G +  +Q   +    +++     L  A+    +
Sbjct: 473 DVVILTDIQGLEDHYGDMDFKVAGTREG-VTALQMDNKAGGITKEILTQALGQARKARME 531

Query: 230 LIKLQKDVISNEV 242
           ++   +  I+  V
Sbjct: 532 ILDKMEACIAAPV 544



 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 82/228 (35%), Gaps = 29/228 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLP 67
           E+  T   V+K A G+   + GDT +LTTA + +K    +  +             G +P
Sbjct: 13  ELQFTTGKVAKQANGAIWARVGDTVVLTTACMTDKPRVGLDFFPLLVDFEERYYSAGKIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R++RS+ +        ++     +        
Sbjct: 73  ---GGFIKRE---GRPSQTAILSARVIDRSIRSLFEDWMRHDVHVVTTVLSVDQKNTPNI 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AI  A  AL                     G V A+  G + G  +V+    ED   + 
Sbjct: 127 LAINAASAALC-------------ISDIPWNGPVGAVRMGYVNGQLVVNPT--EDQMPES 171

Query: 188 DANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
             +  V   +  I  V+  A      +      L +A++ I  + + Q
Sbjct: 172 SLDLTVAGHADGITMVEAGAHEVP--EALLIDALGVAQEEIRKICQFQ 217


>gi|194335788|ref|YP_002017582.1| Polyribonucleotide nucleotidyltransferase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|226702672|sp|B4SDX4|PNP_PELPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|194308265|gb|ACF42965.1| Polyribonucleotide nucleotidyltransferase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 728

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 88/243 (36%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           RL GR  +Q+R IS+   +   A GS L   G+T  L T TL  K        + ++   
Sbjct: 332 RLDGRALDQVRPISIELGIIPRAHGSALFTRGETQALVTITLGTKKDAQSVDNLTSSADK 391

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G   +     G  G R      +  R+++ V          I I  D
Sbjct: 392 KFYLHYNFPPFCVGETGR----LGSIGRREIGHGNLAERSIKMVAPTEEEFPYTIRIVSD 447

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +++++G +  A++ G  +AL D    ++   +   +  + +G   A+         + D+
Sbjct: 448 ILESNGSSSMASVCGGTLALMDGGVPIKKPVSGIAMGLIKEGASYAV---------LSDI 498

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I   Q   +            L  A+     ++   +  
Sbjct: 499 LGNEDHLGDMDFKVSGTRDG-ITACQMDIKIDGLDYHILETALEQARRGRLHILGEMEKA 557

Query: 238 ISN 240
           I +
Sbjct: 558 IPS 560



 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 85/235 (36%), Gaps = 29/235 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTA-----TLEEKVPMWIRNTKHGWITAEYGMLP 67
           IS+      K A+G+ +V+ GDT ++ T      T       +    ++    +  G  P
Sbjct: 15  ISIETGKMAKQADGAVVVRQGDTMVIATVVSSKKTPPPNQDYFPLQVEYREKYSAAGKFP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE+   R   +     R+I RALR +     L   QII+             
Sbjct: 75  ---GGFFKRES---RPSEKEILSARLIDRALRPLFPDGYLYETQIIVTV----------- 117

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
             I+   +   D L  +             +  ++ +  G + G  +V+ D  E    D+
Sbjct: 118 --ISSDQINDADVLGGLAASCAIMVSDIPFQNPMSEVRVGRINGLFVVNPDINELVNSDL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           D     T++  I  ++G  E    S+      +      I  L  LQ + I+ EV
Sbjct: 176 DICIGGTEN-TICMLEG--EMKEISEAEMLDAIKFGHAAIRKLCALQSE-IAAEV 226


>gi|237734516|ref|ZP_04564997.1| 3' exoribonuclease [Mollicutes bacterium D7]
 gi|229382336|gb|EEO32427.1| 3' exoribonuclease [Coprobacillus sp. D7]
          Length = 714

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 92/247 (37%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +     GS L   G+T +L+ AT     E +    +     
Sbjct: 318 IRPDGRKIDEIRPLDSQIDLLPRVHGSALFTRGETQVLSVATLGAIGEHQKIDGLGLEDQ 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 378 KRFMHHYNFPPYSVGETGR----MGAPGRREIGHGALGERALAQVIPSEEAFPYTIRVVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I  + +AL                   +K  VA ++ G++       
Sbjct: 434 EVLESNGSSSQASICASTMALMAAGV-------------PIKAPVAGVAMGLVKKGDAYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     TD+G I  +Q   +    +++     L  AK     ++ 
Sbjct: 481 ILTDIQGMEDHLGDMDFKVAGTDAG-ICALQMDIKIDGITKEILQEALAQAKVARKQIMA 539

Query: 233 LQKDVIS 239
              D I+
Sbjct: 540 NMMDAIA 546



 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPR 68
            +S+    ++K A G+ LV++ DT +L+T       + V  +     +       G +P 
Sbjct: 14  NLSVEVGELAKQANGAVLVRYNDTVILSTVVAGKEPKNVDFFPLTVTYEEKLYSVGKIP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR         RMI R +R +         Q +     +  D     A
Sbjct: 73  --GGFLKRE---GRPSEHGTLTARMIDRPIRPLFADGFRNEVQSVNTVLSVDQDATPEMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA +AL                     G +A ++ G++ G  IV+    +     ++
Sbjct: 128 AMLGASLALC-------------VSDIPFNGPIAGVNVGLVDGEFIVNGTPEQLENSLIN 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                T    I  V+  A+    S++     L    ++I +LI  Q+ V+ 
Sbjct: 175 LEVAGTKDA-INMVEADAKE--VSEEVMLEALLFGHEKIKELIAFQEKVVE 222


>gi|307264921|ref|ZP_07546483.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306920179|gb|EFN50391.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 700

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 91/245 (37%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R+ GR  + +R I     V     GS +   G T +LT AT     + ++   I + + 
Sbjct: 312 IRVDGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGIGDEEA 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G          R+ G       +  RAL  V+         I +  
Sbjct: 372 KRYMHHYNFPPYSVGEVRPLRGPGRREIGHG----ALGERALEPVIPSEEEFPYTIRLVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ ++G T  A++ G+ +AL D    ++       +  + +G V ++         + D
Sbjct: 428 EVLSSNGSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVSV---------LTD 478

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T+ G I  +Q   +     ++     L  A+     ++    +
Sbjct: 479 IQGIEDFLGDMDFKVAGTEKG-ITAIQMDIKIPGIDKEILKMALEKARRGRLYILSKMLE 537

Query: 237 VISNE 241
           VI   
Sbjct: 538 VIKEP 542



 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 90/235 (38%), Gaps = 31/235 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R++ +    V++ A G+  VK+GDT +L T        E +  +    ++       G +
Sbjct: 13  RKLLVQTGKVAQQANGAAWVKYGDTVVLVTVCASKEPREGIDFFPLTVEYEERLYSVGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R +R +         Q+I     +  D    
Sbjct: 73  P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQPE 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ VAL                     G   A++ G++ G  I++ ++ +     
Sbjct: 127 IVAMIGSSVALS-------------ISDIPFNGPTGAVAVGLVDGQFIINPNHEQREKSL 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI----KLQKDV 237
           +      T    IV V+  A+     ++     +  A + I  +I    ++ K+V
Sbjct: 174 MHLVVSGTKDA-IVMVEAGAKEVP--EETMLDAIMYAHEYIKQIIGFIEEIVKEV 225


>gi|78189646|ref|YP_379984.1| polynucleotide phosphorylase/polyadenylase [Chlorobium
           chlorochromatii CaD3]
 gi|123579359|sp|Q3APY4|PNP_CHLCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78171845|gb|ABB28941.1| RNA binding S1 [Chlorobium chlorochromatii CaD3]
          Length = 728

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 87/241 (36%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           RL GR  +Q+R I++   +   A GS L   G+T  L T TL  +        + N+   
Sbjct: 332 RLDGRALDQVRPITIELGLIPRAHGSALFTRGETQALVTLTLGTQKDAQSVDNLTNSDDK 391

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R      +  R+++ V    A     I I  D
Sbjct: 392 RFYLHYNFPPFSVGECGR----LGSIGRREIGHGNLAERSIKMVAPTEAEFPYTIRIVSD 447

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +++++G +  A++ G  +AL D    +    +   +  + +    A+         + D+
Sbjct: 448 ILESNGSSSMASVCGGTLALMDGGVPIRKPVSGIAMGLIKENDKYAV---------LSDI 498

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I   Q   +            L  A+     ++   +  
Sbjct: 499 LGNEDHLGDMDFKVSGTRDG-ITACQMDIKIDGLDYHIVENALEQARKGRLHILNEMEKA 557

Query: 238 I 238
           I
Sbjct: 558 I 558



 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 84/229 (36%), Gaps = 22/229 (9%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGWITAEYGMLPR 68
           R +S+      K A+G+ +V+ GDT +L T    +K P   ++          +Y    R
Sbjct: 13  RILSIETGKMAKQADGAAIVRLGDTMVLATVVSSKKTPPLGQDFFPLQVEYREKYSAAGR 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +     R+I RALR +         QIII              
Sbjct: 73  FPGGFFKRE---GRPSEKEILSARLIDRALRPLFPDGYYYETQIIISV------------ 117

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            I+   V   D L  +   +         +  ++ +  G + G  I++ D  E    D+D
Sbjct: 118 -ISSDQVNDGDVLGGLAASAAIMVSDIPFQNPMSEVRVGRVNGLYIINPDVNELKESDID 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
                T+   I  ++G  E    S+      +      I  L  LQ++V
Sbjct: 177 MCIGGTND-TICMLEG--EMNEISETEMLEAIQFGHTAIRKLCVLQQEV 222


>gi|89900282|ref|YP_522753.1| polynucleotide phosphorylase/polyadenylase [Rhodoferax
           ferrireducens T118]
 gi|122479529|sp|Q21YD1|PNP_RHOFD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|89345019|gb|ABD69222.1| 3' exoribonuclease [Rhodoferax ferrireducens T118]
          Length = 706

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 93/247 (37%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L   TL  +        +      
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVTTLGTERDAQRIDALSGDYED 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +      R+ G      R+  RAL +V+         + +  +
Sbjct: 377 RFMLHYNMPPFATGETGRVGTPKRREIGHG----RLAKRALMAVLPSKEEFPYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G  ++L D    M             K HVA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLIKEENRFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     L  AK+    ++  
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538

Query: 234 QKDVISN 240
            ++ ++ 
Sbjct: 539 MQEAMAE 545



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 75/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           +++    +++ A G+ L+    T +L T       +     +     +   T   G +P 
Sbjct: 18  VTMETGEIARQASGAVLLDMDGTVVLATVVAKTEGKAGQDFFPLTVDYLEKTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  KRE   GR         R+I R +R +          +++    +  +     A
Sbjct: 77  --GSFFKRE---GRPSEFETLTSRLIDRPIRPLFPEGFFNEVHVVVHTLSLNPEVDADIA 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+     AL                     G + A   G + G  +++          +D
Sbjct: 132 ALIAVSAALSVSGI-------------PFSGPIGAARVGYINGEYVLNPGQTARKDSVMD 178

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
                T++  ++     +E    S++     +    +     I  + +L +D 
Sbjct: 179 LVVAGTEAAVLMV---ESEAQQLSEEIMLGAVVFGHEQGNIAINAIHELVRDA 228


>gi|167756799|ref|ZP_02428926.1| hypothetical protein CLORAM_02348 [Clostridium ramosum DSM 1402]
 gi|167702974|gb|EDS17553.1| hypothetical protein CLORAM_02348 [Clostridium ramosum DSM 1402]
          Length = 718

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 92/247 (37%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +     GS L   G+T +L+ AT     E +    +     
Sbjct: 318 IRPDGRKIDEIRPLDSQIDLLPRVHGSALFTRGETQVLSVATLGAIGEHQKIDGLGLEDQ 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 378 KRFMHHYNFPPYSVGETGR----MGAPGRREIGHGALGERALAQVIPSEEAFPYTIRVVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I  + +AL                   +K  VA ++ G++       
Sbjct: 434 EVLESNGSSSQASICASTMALMAAGV-------------PIKAPVAGVAMGLVKKGDAYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     TD+G I  +Q   +    +++     L  AK     ++ 
Sbjct: 481 ILTDIQGMEDHLGDMDFKVAGTDAG-ICALQMDIKIDGITKEILQEALAQAKVARKQIMA 539

Query: 233 LQKDVIS 239
              D I+
Sbjct: 540 NMMDAIA 546



 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPR 68
            +S+    ++K A G+ LV++ DT +L+T       + V  +     +       G +P 
Sbjct: 14  NLSVEVGELAKQANGAVLVRYNDTVILSTVVAGKEPKNVDFFPLTVTYEEKLYSVGKIP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR         RMI R +R +         Q +     +  D     A
Sbjct: 73  --GGFLKRE---GRPSEHGTLTARMIDRPIRPLFADGFRNEVQSVNTVLSVDQDATPEMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA +AL                     G +A ++ G++ G  IV+    +     ++
Sbjct: 128 AMLGASLALC-------------VSDIPFNGPIAGVNVGLVDGEFIVNGTPEQLENSLIN 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                T    I  V+  A+    S++     L    ++I +LI  Q+ V+ 
Sbjct: 175 LEVAGTKDA-INMVEADAKE--VSEEVMLEALLFGHEKIKELIAFQEKVVE 222


>gi|110638186|ref|YP_678395.1| polynucleotide phosphorylase/polyadenylase [Cytophaga hutchinsonii
           ATCC 33406]
 gi|123058787|sp|Q11U61|PNP_CYTH3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110280867|gb|ABG59053.1| polyribonucleotide nucleotidyltransferase [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 717

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 88/250 (35%), Gaps = 28/250 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           RL GR   Q+R I         A GS +   G+T  LTT T   ++   + +    + + 
Sbjct: 322 RLDGRSLEQIRPIWSEVGYLPSAHGSAIFTRGETQSLTTVTFGTRLDEQMIDSAMFSGNN 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +   Y     STG          R+ G       +  RA++ V+         I I  D
Sbjct: 382 KLMLHYNFPGFSTGEVKPNRGPGRREVGHG----NLAYRAIKKVMPPEIENPYTIRIVSD 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 438 ILESNGSSSMATVCAGTLALMDAGIK-------------IKAPVSGIAMGLITDTKTGRW 484

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T+ G I   Q   +    S D     L  A      ++
Sbjct: 485 AVLSDILGDEDHLGDMDFKVTGTEKG-ITACQMDIKVDGLSYDILSQALQQANRGRLHIL 543

Query: 232 KLQKDVISNE 241
              K  ++  
Sbjct: 544 SEMKKTLATP 553



 Score = 79.4 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 84/231 (36%), Gaps = 33/231 (14%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
             G      REI +      K A+GS +VK G+  +L T       +  V     +  + 
Sbjct: 16  PDG------REIQIETGKLAKQADGSAVVKLGNAMILATVVSAKEAKPGVDFMPLSVDYQ 69

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
              A  G +P   G  +KRE+   R       I R++ RA+R +         Q+ I   
Sbjct: 70  EKFASNGKIP---GGFLKRES---RLSDYEILISRLVDRAMRPLFPEDFHADTQVAIT-- 121

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +I AD              L D L  +   +          G V+ +    L G  I++ 
Sbjct: 122 LISADADV-----------LPDALACLAAQAAMSVSDIPFNGPVSEVRVISLNGEFIINP 170

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
              +    +++   V     +++ V+G  E +  S++     + +A D I 
Sbjct: 171 KPAQIEKAELEL-IVAASYDNVIMVEG--EMSEVSEELMLNAIKVAHDAIR 218


>gi|320107057|ref|YP_004182647.1| polyribonucleotide nucleotidyltransferase [Terriglobus saanensis
           SP1PR4]
 gi|319925578|gb|ADV82653.1| polyribonucleotide nucleotidyltransferase [Terriglobus saanensis
           SP1PR4]
          Length = 799

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 89/244 (36%), Gaps = 18/244 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKH 56
           +R   R  +++R I +   +     GS L   G+T  L TATL               + 
Sbjct: 314 IRPDRRAFDEIRTIDIEVGILPRTHGSALFTRGETQALVTATLGTGDDAQRMESYEGEQK 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +    S R+ G       +  RA+ +V+   A     + +  
Sbjct: 374 KRFMLHYNFPPYSVGEVGRMTGTSRREVGHG----ALAYRAIEAVLPPEAESPYTLRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           D+ +++G +  A++ GA +AL      ++       +  V +G   AI         + D
Sbjct: 430 DITESNGSSSMASVCGASLALMQAGISLKGSVAGVAMGLVKEGDSYAI---------LTD 480

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T +G I  +Q   +    +       +  A+     L+     
Sbjct: 481 IAGAEDHYGDMDFKVAGTRNG-ITAMQMDIKIMGITPQIMREAMEQARHGRLFLLDKMDA 539

Query: 237 VISN 240
           VI++
Sbjct: 540 VIAS 543



 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 78/232 (33%), Gaps = 34/232 (14%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
            I+     ++K A G+     GD  +L TA      +E +  +    ++       G +P
Sbjct: 14  RITFETGRIAKQASGAAFTSSGDVVILATAVGAPDPKEGIDFFPLTVEYRETAYGGGRIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   +     R+I R  R +         Q+I        +     
Sbjct: 74  ---GGFIKRE---GRPSEKEILTCRLIDRPCRPLFPDGYRNETQVIAFVYSADKENDPDV 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AI  A  A+                    +G + A+  G++ G  IV+  Y E     +
Sbjct: 128 IAINAASCAIS-------------LSDLPFQGPIGAVRVGLIDGNFIVNPTYTERKESLI 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD-------RIADLIK 232
           +     T  G IV V+  A+     +D     +    +        I +L+ 
Sbjct: 175 NIIVAGTKDG-IVMVESGAKEIP--EDKVIDAIEFGHEQVKLICAGIDELVA 223


>gi|154295932|ref|XP_001548399.1| hypothetical protein BC1G_13119 [Botryotinia fuckeliana B05.10]
 gi|150843771|gb|EDN18964.1| hypothetical protein BC1G_13119 [Botryotinia fuckeliana B05.10]
          Length = 261

 Score =  118 bits (296), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 83/242 (34%), Gaps = 20/242 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           +RL GR+ N++R ++        ++GS  +  G+T +L T T     P  +R+   G   
Sbjct: 13  LRLDGRRWNELRRLTAQISTQPSSDGSSYLSMGNTQVLCTVTGP-CDPSKLRSIGGGGSN 71

Query: 58  ------WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
                  +  E      +  +R K     GR   R QE+   +       +  +      
Sbjct: 72  NAGEKAEVRVEISFAGFAGVDRKK----YGRNDKRIQELSNTLSTTFTPHLLTTLTSHST 127

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
           I+I   ++  DG   +A I  + +AL D    M              G  ++ S      
Sbjct: 128 ILISLHILSLDGSLLSALINASTLALIDAGIPMPSYICACTA-----GSTSSYSSNDEKA 182

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
            P++DL+ GE+  +           G    V                ML +  D    + 
Sbjct: 183 DPLLDLNLGEEQELPF-LTVATAGEGDGDGVVALVMETRVQAGRLEGMLAVGVDGCKQVR 241

Query: 232 KL 233
           ++
Sbjct: 242 EI 243


>gi|237805195|ref|YP_002889349.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231273495|emb|CAX10411.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
           B/TZ1A828/OT]
          Length = 695

 Score =  117 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 92/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKH 56
           +R+ GR   ++R IS+         GSCL   G+T    + T   E     +  +     
Sbjct: 314 IRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDGA 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +     G  G R     ++  +AL  V+   +     I ++ 
Sbjct: 374 ARFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHVLPEISRFPYIIRLES 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++ +++G +  A++ G  +AL D                 +K  VA I+ G++       
Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGV-------------PIKAPVAGIAMGLILDRDQAI 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I   Q   +    +       L  AK   + ++ 
Sbjct: 477 ILSDISGIEDHLGDMDFKVAGTAKG-ITAFQMDIKIEGITHKIMEQALAQAKQGRSHILN 535

Query: 233 LQKDVISNE 241
           L   V+++ 
Sbjct: 536 LMTQVLASP 544



 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 85/235 (36%), Gaps = 33/235 (14%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
                +++ A G+ LVK  +T +      A+L E V        +     ++    R++G
Sbjct: 18  FETGKIARQASGAILVKMNETWVFSSACAASLSEAVDFLPFRVDYQE---KFSSAGRTSG 74

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAA 129
             +KRE   GR   R   + R+I R+LR       +   Q++        DG T     A
Sbjct: 75  GFLKRE---GRPSEREILVSRLIDRSLRPSFPNRLMQDIQVLSYVW--SYDGKTLPDPLA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           I GA  AL                       +A +  G++ G  +++    E S   +D 
Sbjct: 130 ICGASAALA-------------ISEVPQNCIIAGVRVGLVGGKWVINPTRDELSASKLDL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL---IKLQKDVISNE 241
               T S  ++ ++G       +++     +   +  IA +   I+  +     +
Sbjct: 177 VMAGTASA-VLMIEG--HCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKATGKQ 228


>gi|16078732|ref|NP_389551.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221309547|ref|ZP_03591394.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221313871|ref|ZP_03595676.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221318794|ref|ZP_03600088.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221323066|ref|ZP_03604360.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|321315436|ref|YP_004207723.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis BSn5]
 gi|1709698|sp|P50849|PNP_BACSU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase;
           AltName: Full=Vegetative protein 15; Short=VEG15
 gi|1184680|gb|AAC43595.1| polynucleotide phosphorylase [Bacillus subtilis]
 gi|2634041|emb|CAB13542.1| polynucleotide phosphorylase (PNPase) [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291484223|dbj|BAI85298.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
           subsp. natto BEST195]
 gi|320021710|gb|ADV96696.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis BSn5]
 gi|1589234|prf||2210369A polynucleotide phosphorylase
          Length = 705

 Score =  117 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 89/248 (35%), Gaps = 26/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR  +Q+R +S    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G            G R      +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPQFSVGE----TGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKSGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T+ G +  +Q   +    S++     L  AK    +++ 
Sbjct: 478 VLTDIQGMEDALGDMDFKVAGTEKG-VTALQMDIKIEGLSREILEEALQQAKKGRMEILN 536

Query: 233 LQKDVISN 240
                +S 
Sbjct: 537 SMLATLSE 544



 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 94/232 (40%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ ++++GDT +L   TA+ E K +  +     +       G +P
Sbjct: 15  RTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q+I     +  +  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G +    I++    +    D+
Sbjct: 129 AAMFGSSLALS-------------VSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+     ++     +    + I  LI  Q+++++
Sbjct: 176 NLVVAGTKDA-INMVEAGADEVP--EEIMLEAIMFGHEEIKRLIAFQEEIVA 224


>gi|226940843|ref|YP_002795917.1| polynucleotide phosphorylase/polyadenylase [Laribacter
           hongkongensis HLHK9]
 gi|254782724|sp|C1D8W8|PNP_LARHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226715770|gb|ACO74908.1| Pnp [Laribacter hongkongensis HLHK9]
          Length = 701

 Score =  117 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 98/241 (40%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R I++   V   A GS L   G+T  L + TL  K    I +   G  T 
Sbjct: 316 RIDGRDTRTVRPIAIRTGVLPRAHGSVLFTRGETQALVSTTLGTKQDEQIIDALAGEYTD 375

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +      R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGETGRMGPPKRREIGHG----RLAKRALIAVLPKQEDFSYSMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L +    +        +  +L+ +  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLMNAGVPLSAHVAGIAMGLILEDNRFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G +  +Q   +    +++     L+ AK+    ++ + K  
Sbjct: 483 LGDEDHLGDMDFKVAGTENG-VTALQMDIKIQGITKEIMQVALDQAKEGRLHILGIMKSA 541

Query: 238 I 238
           I
Sbjct: 542 I 542



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 83/234 (35%), Gaps = 28/234 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
           + L    +++ A GS LV   DT +L   T+ + V      +     +   T   G +P 
Sbjct: 16  VKLETGEIARQASGSVLVSMDDTVVLVAVTVNKDVKPGQDFFPLTVDYYERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         Q++     +  +      
Sbjct: 75  --GGFFKRE---GKQSEKEILTCRLIDRPIRPLFPAGFYHDVQVVATVMSLNPEVDADIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  A+                     G + A   G   G  I++    E +T  +D
Sbjct: 130 AMIGASAAMVLAGV-------------PFMGPIGAARVGYANGEYILNPTKTELTTSQLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                T+S  ++     +E     +      +    +++   IK   + +++EV
Sbjct: 177 LVVAGTESAVLMV---ESEAQQLPEAVMLGAVVYGHEQMQAAIKAINE-LADEV 226


>gi|322818634|gb|EFZ25985.1| ribosomal RNA processing protein 41A, putative [Trypanosoma cruzi]
          Length = 252

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 18/182 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWI 59
           +RL GR+  + R ++L        +G C V  G   +  +     +V   + +      I
Sbjct: 13  LRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLATVCASVYGPREVTNRLESKYNECII 72

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           T E  +   +   R        R+   S+E+   +    RSVV LS   + QI I  +V+
Sbjct: 73  TCEVAIAAFAGEKRR----APQRRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHICVEVL 128

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           + DG  + A I  A +AL D    M D              V A + G++    +VDL  
Sbjct: 129 RQDGSDKAACINAACLALVDASVAMRDI-------------VYAQTVGLIHAVDVVDLTT 175

Query: 180 GE 181
            E
Sbjct: 176 EE 177


>gi|255311683|ref|ZP_05354253.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           6276]
          Length = 695

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 93/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKH 56
           +R+ GR   ++R IS+         GSCL   G+T    + T   E     +  +     
Sbjct: 314 IRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDGA 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +     G  G R     ++  +AL  V+  ++     I ++ 
Sbjct: 374 ARFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHVLPETSRFPYIIRLES 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++ +++G +  A++ G  +AL D                 +K  VA I+ G++       
Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGV-------------PIKAPVAGIAMGLILDRDQAI 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I   Q   +    +       L  AK   + ++ 
Sbjct: 477 ILSDISGIEDHLGDMDFKVAGTAKG-ITAFQMDIKIEGITHKIMEQALAQAKQGRSHILN 535

Query: 233 LQKDVISNE 241
           L   V+++ 
Sbjct: 536 LMTQVLTSP 544



 Score = 82.4 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 86/235 (36%), Gaps = 33/235 (14%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
                +++ A G+ LVK  +T +      A+L E V        +     ++    R++G
Sbjct: 18  FETGKIARQASGAVLVKMNETWVFSSACAASLSEAVDFLPFRVDYQE---KFSSAGRTSG 74

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAA 129
             +KRE   GR   R   + R++ R+LR       +   Q++        DG T     A
Sbjct: 75  GFLKRE---GRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVW--SYDGKTLPDPLA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           I GA  AL                       VA +  G++ G  +++    E S   +D 
Sbjct: 130 ICGASAALA-------------ISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL---IKLQKDVISNE 241
               T S  ++ ++G       +++     +   +  IA +   I+  +  I  +
Sbjct: 177 VMAGTASA-VLMIEG--HCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQ 228


>gi|169333888|ref|ZP_02861081.1| hypothetical protein ANASTE_00274 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259453|gb|EDS73419.1| hypothetical protein ANASTE_00274 [Anaerofustis stercorihominis DSM
           17244]
          Length = 711

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 90/246 (36%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ +++R I+      + A GS L   G T +++ ATL    +E++   I     
Sbjct: 311 IRPDGRKVDEIRPITCEVGKIRRAHGSGLFTRGQTQVMSMATLGAIRDEQIIDGIGEETS 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G            G R      +  RAL  V+         I +  
Sbjct: 371 KKYIHHYNFPAYSVGE----TGPMRGPGRREIGHGALAERALLPVIPDQKDFPYTIRVVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V+ ++G T  A++ G+ ++L D                 +K  VA I+ G++       
Sbjct: 427 EVLASNGSTSQASVCGSTLSLMDAGV-------------PIKAPVAGIAMGLIKEENKVS 473

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +     +      L  AK     ++ 
Sbjct: 474 VLSDIQGVEDFYGDMDFKVAGTSEG-ITAIQMDIKIKGIDKAILTEALARAKKGRFHILG 532

Query: 233 LQKDVI 238
             ++ I
Sbjct: 533 KMEEAI 538



 Score = 99.4 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 90/234 (38%), Gaps = 27/234 (11%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           RE+ +        A GS  + +GDT +L  A +    +E +  +  +  +       G +
Sbjct: 12  RELCVEVGELAQMANGSVFISYGDTQILVNACMSKEAKEGIDFFPLSVFYEEKMYSVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   ++    R+I R LR + D       QI+     +  D    
Sbjct: 72  P---GGFLKRE---GRASEKATLTCRLIDRPLRPLFDKGFRNDVQIVATVMGVDQDNSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             +I GA +AL                     G V A++ G++ G  + +    +    D
Sbjct: 126 ITSILGASLAL-------------GISDIPFDGPVGAVNVGLIDGELVYNPTSDQRDISD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    ++ V+  A     S++     +  A + I ++IK Q+++I  
Sbjct: 173 LSLTVAGTSEA-VLMVEAGANE--VSEEIMIDAIMGAHEHIKEIIKFQEEIIKE 223


>gi|78776629|ref|YP_392944.1| polynucleotide phosphorylase/polyadenylase [Sulfurimonas
           denitrificans DSM 1251]
 gi|123754746|sp|Q30TH2|PNP_SULDN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78497169|gb|ABB43709.1| Polyribonucleotide nucleotidyltransferase [Sulfurimonas
           denitrificans DSM 1251]
          Length = 721

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 91/243 (37%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT--TATLEEKVPMWIRNTKHG- 57
           +R  GR  N++R IS++  V   A  SCL   G T  L   T    +   M+   T  G 
Sbjct: 340 VRADGRALNEIRPISISTNVLPSAHASCLFTRGQTQALVVLTMGGPKDAQMFENLTDEGT 399

Query: 58  ---WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y     S G          R+ G       +  RAL  +V+L     + + +
Sbjct: 400 QNENFMVHYNFPGFSVGEASPIMGTKRRELGHG----NLAKRALEPIVNLE---GQTVRL 452

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++++++G +  A + G ++AL        D      +  V +G   AI         +
Sbjct: 453 VSEILESNGSSSMATVCGGYMALRAADIETSDTIAGIAMGMVSEGDKYAI---------L 503

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED   D+D     +  G I  +Q   +    S +     L  AK+  A +I + 
Sbjct: 504 SDIMGLEDHDGDLDFKVTGSKDG-ITAMQMDIKLGGISLNILKEALYQAKEGRAHIINIM 562

Query: 235 KDV 237
           ++ 
Sbjct: 563 QEA 565



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 67/197 (34%), Gaps = 30/197 (15%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72
           V+K A G+  +K G+T +L T  ++E     I       +T +Y       G +P   G 
Sbjct: 21  VAKQANGAAWLKSGNTVILATVVIDETE---IVKDDFLPLTVQYIEKAYAAGKIP---GG 74

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
             KRE    +         R++ R+LR +         QI I    +  +   +      
Sbjct: 75  FFKRET---KASDFETLTSRIVDRSLRPLFPKGFGHPTQITIMVFSVDKESDLQV----- 126

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
                   L      +  +     +   V+AI    + G  I++    E     +D    
Sbjct: 127 --------LALNAASAALYVSDIDINKSVSAIRVAKIDGELILNPTLSELDKSTLDLYLS 178

Query: 193 MTDSGHIVEVQGSAERA 209
            T    ++ ++  ++  
Sbjct: 179 GTKED-LLMIEMRSKGG 194


>gi|254169471|ref|ZP_04876288.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
 gi|197621577|gb|EDY34175.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
          Length = 210

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 79/208 (37%), Gaps = 18/208 (8%)

Query: 35  THLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMI 94
           T +L    +E   P +      G +T    + P ++          G  G  + E+ R++
Sbjct: 1   TRVLVGVKIEPGTP-FPDTPNMGILTTNAELAPLASPT-----FEPGPPGEEAIELARVV 54

Query: 95  GRALRS--VVDLSAL----GSRQ--IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMED 146
            R +R    +DL  L    G +   + ID  V+  DG    AA  GA  AL + +     
Sbjct: 55  DRGIREGHAIDLEKLVIEEGEKVWIVFIDIHVLDYDGNLFDAAGYGALAALTNAIVPASR 114

Query: 147 CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
                     ++ +   ++   +  + + D +  E+S           + G I  +Q   
Sbjct: 115 YDLGEDFKLPVQHYPVPVTFAKIGDWIVADPNLDEESIASARLTVATNEEGKINAMQK-G 173

Query: 207 ERATFSQDHFFAMLNLAKD---RIADLI 231
              TF+ +    ++N++ +   ++ ++I
Sbjct: 174 LSGTFTYEEVKKVINMSMNIGGKVREII 201


>gi|94497007|ref|ZP_01303581.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas sp. SKA58]
 gi|94423683|gb|EAT08710.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas sp. SKA58]
          Length = 778

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 95/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR   Q+R I           GS L   G+T  + T TL  K    + +   G    
Sbjct: 323 RIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGLTGLHYE 382

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G      ++  RAL  V+         I +  D
Sbjct: 383 NFMLHYNFPPYSVGEVGRFGAPGRREVGHG----KLAWRALHPVLPSKDEFPYTIRVLSD 438

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +++ D    ++   +   +  +L+G   A+         I D+
Sbjct: 439 ITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKDYAV---------ISDI 489

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   + A  +Q+ F   L  AK+  A ++      
Sbjct: 490 LGDEDHLGDMDFKVAGTENG-ITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMSKA 548

Query: 238 ISN 240
           +S+
Sbjct: 549 LSS 551



 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 75/225 (33%), Gaps = 27/225 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           ++L    +++ A+ + L  +G+T +L   T  + V           +T  Y     S   
Sbjct: 23  LTLETGRIARQADAAVLATYGETVVLCAVTAAKSV---KDGQDFFPLTVHYQ-EKYSAAG 78

Query: 73  RVKREAVSGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTA 128
           R+        +G   +E  + R+I R +R +          I +   V+  DG       
Sbjct: 79  RIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNE--INVIAQVLSFDGESEPDIV 136

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+  A  AL                     G + A   G   G   ++    E    D+D
Sbjct: 137 AMIAASAAL-------------TLSGVPFMGPIGAARVGYKDGEYQLNPSLEEAKEGDLD 183

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
                T +  ++ V+  +E    S+D     +  A D    ++  
Sbjct: 184 LVVAATGNA-VMMVE--SEAKELSEDVMLGAVMFAHDAAKKVVNA 225


>gi|228472909|ref|ZP_04057666.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228275491|gb|EEK14268.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 727

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 81/230 (35%), Gaps = 20/230 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +RL GR   Q+R I           GS +   G+T  LTT TL    E  V         
Sbjct: 317 LRLDGRNTKQIRPIWCEVGYLPSPHGSAIFTRGETQSLTTVTLGTSREANVIDIPSEQGE 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG        S R+ G       +  RAL+ ++         + +  
Sbjct: 377 ERFYLHYNFPPFSTGEARPLRGTSRREVGHG----NLAQRALKRMIPED--CPYTVRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A +    +AL D    M+   +   +  +  G   A+         + D
Sbjct: 431 EILESNGSSSMATVCAGTLALMDAGIQMKKPVSGIAMGLITDGDKYAV---------LSD 481

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           +   ED   D+D     T  G I   Q   +    + +     L  A++ 
Sbjct: 482 ILGDEDHLGDMDFKVTGTKDG-ITACQMDIKIKGLTYEILEKALEQAREG 530



 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 82/236 (34%), Gaps = 28/236 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R IS+      K A+GS +V+ G+  LL T        E V        +    A  G  
Sbjct: 16  RTISIETGKLAKQADGSVVVQMGNAMLLATVVANKEAGEGVDFLPLTVDYREKFAAAGRF 75

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KREA   R   +     R++ R LR +         Q++I   ++  D    
Sbjct: 76  P---GGFFKREA---RPSDQEILTMRLVDRVLRPLFPKEYYCEVQVMI--QLMSHDENV- 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                     + D L  +   +          G ++ +  G + G  I++         +
Sbjct: 127 ----------MPDALAGLAASACLAVSDIPFDGPISEVRVGRINGEFIINPSAQ--QLAE 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            D + ++  S   V +    E    S+      ++ A + I   I+ Q + +  +V
Sbjct: 175 SDMDIMVGASKEFVAMV-EGEMDEVSEKDMADAIHFAHEAIKVQIEAQ-ERLREKV 228


>gi|51246460|ref|YP_066344.1| polynucleotide phosphorylase/polyadenylase [Desulfotalea
           psychrophila LSv54]
 gi|81641366|sp|Q6AJY9|PNP_DESPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|50877497|emb|CAG37337.1| probable polyribonucleotide nucleotidyltransferase [Desulfotalea
           psychrophila LSv54]
          Length = 692

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 93/248 (37%), Gaps = 26/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           +R+ GR  +++R+IS          GS L   G+T  L TATL  +        +     
Sbjct: 312 VRIGGRAWDEIRDISSETEYLPKTHGSALFTRGETQALVTATLGSERDKQRVETLNGETS 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P   G        S R  G       +  R L +V+         I +  
Sbjct: 372 RRFMLHYNFPPYCVGEARFLRGPSRRDIGHGT----LATRGLEAVLPSEEDFPYAIRVVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++++++G +  A++ G  +A+ D                 LK  V+ I+ G++    G  
Sbjct: 428 EILESNGSSSMASVCGGSMAMMDAGV-------------PLKRPVSGIAMGLIKEGEGVA 474

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           I+ D+   ED   D+D   V T  G I  +Q   +    S+D     L+ AK     +++
Sbjct: 475 ILSDILGDEDHLGDMDFKVVGTCDG-ITALQMDIKIDGVSRDIMSNALDQAKRGRMHILE 533

Query: 233 LQKDVISN 240
                I+ 
Sbjct: 534 EMSKGIAE 541



 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 82/235 (34%), Gaps = 40/235 (17%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW----ITAEYGMLPR 68
           IS+      K A GS ++           T+     +  + +        +T EY     
Sbjct: 14  ISIETGKLAKQASGSIVIS-------CGGTVVLVTVVGAKTSNPNVDFLPLTIEYQ-EKF 65

Query: 69  STGNRV-----KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD- 122
           S   RV     +RE   GR   +     R+I R LR +         Q+I    V+ AD 
Sbjct: 66  SAVGRVPGNYFRREI--GRPSDQEVLTCRIIDRPLRPLFPEGYRSETQVIAT--VLSADQ 121

Query: 123 -GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
                  A+TGA  AL                     G VA      + G  +++  + E
Sbjct: 122 VNSPDVLALTGASAALS-------------ISHIPFAGPVAGGRIAYIDGKYVLNPTFAE 168

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             +  +D     T +  IV V+G A+    S+D     +  A + +  LI LQ +
Sbjct: 169 LESSSMDLMVACTRNA-IVMVEGKADE--LSEDEILGAIFFAFENLQPLINLQDE 220


>gi|270009587|gb|EFA06035.1| hypothetical protein TcasGA2_TC008865 [Tribolium castaneum]
          Length = 300

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 72/206 (34%), Gaps = 36/206 (17%)

Query: 2   RLSGRQENQMREI------------------SLTRRVSKYAEGSCLVKFGDTHLLTTATL 43
           R  GR   + R+I                   L   V   A+GS  ++   T ++ +   
Sbjct: 42  RADGRTSTEHRKICNLSLGPCVFLDLIFNFLVLKTGVVSQAKGSAYIELDQTKVIVSVFD 101

Query: 44  EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD 103
             ++P     +  G I  E+   P S   R   +     Q    Q+   ++ +AL S V 
Sbjct: 102 PREIPNKTDYSSKGEIYCEFKFAPFSCHKRRLHQ-----QDAEEQQFSAIMKQALESAVF 156

Query: 104 LSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA 163
                + Q+ I   V+  DG   +AAIT A VAL      M D              + +
Sbjct: 157 RHEFPNFQVDIYAMVLHNDGAALSAAITAAGVALAHAGIPMYDL-------------ITS 203

Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDA 189
           ++  +   + +VD    E+    V  
Sbjct: 204 VTLAVQGNHLLVDPTLEEERLCQVPL 229


>gi|295706237|ref|YP_003599312.1| polynucleotide phosphorylase [Bacillus megaterium DSM 319]
 gi|294803896|gb|ADF40962.1| polynucleotide phosphorylase (PNPase) [Bacillus megaterium DSM 319]
          Length = 708

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 89/249 (35%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR  +++R +S    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 VRPDGRSIDEIRPLSSETNLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLSVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         I +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPNEKDFPYTIRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLIKSGEHYS 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T++G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTENG-VTALQMDIKIDGLSREILDEALQQAKKGRMQILN 536

Query: 233 LQKDVISNE 241
                I+  
Sbjct: 537 HMMSTIATP 545



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 93/232 (40%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++ +    ++K A G+ L+++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RKLEVEVGQLAKQANGAALIRYGDTVVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  +  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSVVMSVDQNCSSEI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A +  G +    +V+    E    D+
Sbjct: 129 AAMFGSSLALS-------------VSDIPFEGPIAGVIVGRVDNEFVVNPTVDELEKSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                 T    I  V+  A+     ++     +    ++I  LI  Q+++++
Sbjct: 176 HLTVAGTKDA-INMVEAGADEVP--EEVMLEAIMFGHEQIKKLIAFQEEIVA 224


>gi|85710513|ref|ZP_01041577.1| polyribonucleotide nucleotidyltransferase [Erythrobacter sp. NAP1]
 gi|85687691|gb|EAQ27696.1| polyribonucleotide nucleotidyltransferase [Erythrobacter sp. NAP1]
          Length = 762

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 95/241 (39%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR+ +Q+R I     +     GS L   G+T  + T TL     E++   +    + 
Sbjct: 320 RIDGRKLDQVRPIEAMVGLLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGLEGLSYS 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +    S R+ G      ++  RALR V+  +      I +  D
Sbjct: 380 NFMLHYNFPPYSVGEVGRFGFTSRRETGHG----KLAFRALRPVLPDAEEFPYTIRVLSD 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +++ D    +    +   +  +L+G   A+         + D+
Sbjct: 436 ITESNGSSSMATVCGGALSMMDAGVPLARPVSGIAMGLILEGEDFAV---------LSDI 486

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     ++ G I  +Q   + A  +Q+     L  AK   A ++      
Sbjct: 487 LGDEDHLGDMDFKVAGSEEG-ITSLQMDIKVAGITQEIMTQALEQAKAGRAHILGEMAKA 545

Query: 238 I 238
           +
Sbjct: 546 L 546



 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 83/240 (34%), Gaps = 42/240 (17%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A+G+ L  +G+T +L       +++E    +     +    +  G +P 
Sbjct: 16  LTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLTVHYQEKFSAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR-- 126
             G   KRE   GR   +     R+I R  R +          I +   V+  DG T   
Sbjct: 75  --GGFFKRE---GRATEKETLTSRLIDRPCRPLFPEGFYNE--INVIAQVLSYDGETEPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYG----E 181
             A+  A  AL                     G + A   G    G  +++        E
Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIGAARVGFTNDGEYVLNPTVADALGE 174

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA----KDRIADLIKLQKDV 237
           D  +  D     T    ++ V+  +E    +++     +  A    +  I  +I+L +  
Sbjct: 175 DGRL--DLVVAATQDA-VMMVE--SEAKELTEEEMLGAVMFAHEESRKVIGAIIELAEQA 229


>gi|321262691|ref|XP_003196064.1| 3'-to-5' phosphorolytic exoribonuclease; Ski6p [Cryptococcus gattii
           WM276]
 gi|317462539|gb|ADV24277.1| 3'-to-5' phosphorolytic exoribonuclease, putative; Ski6p
           [Cryptococcus gattii WM276]
          Length = 262

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 90/242 (37%), Gaps = 21/242 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWI 59
           +R   R+  ++R  S        ++GS     G T ++ +     +     + +     +
Sbjct: 14  LRQDARRPYELRSTSFQLSTHPSSDGSSTATQGLTTVVVSVFGPREPRNRSLASHDRAVV 73

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           + E G++P + G   +R     R   R QEI   I +    V+        +I I   V+
Sbjct: 74  SVEVGVVPWAAGAGARRT----RGDKRLQEIGAAIRQTFEPVIMTHLYPRSEIAIHVQVL 129

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
            ADGG    +I    +AL D    + D             +V++IS G+    P++DL  
Sbjct: 130 SADGGILPTSINATTLALIDAGISLLD-------------YVSSISIGLHLLQPLLDLSQ 176

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            E+S +       +  SG I   Q          D F  ML L  +    L +    V+ 
Sbjct: 177 PEESDLPSLVIASLPSSGKITLAQM---ETRLHVDRFEEMLTLGVEACKVLKEEMDGVVK 233

Query: 240 NE 241
           + 
Sbjct: 234 DR 235


>gi|294500891|ref|YP_003564591.1| polynucleotide phosphorylase (PNPase) [Bacillus megaterium QM
           B1551]
 gi|294350828|gb|ADE71157.1| polynucleotide phosphorylase (PNPase) [Bacillus megaterium QM
           B1551]
          Length = 708

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 89/249 (35%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR  +++R +S    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 VRPDGRSIDEIRPLSSETNLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLSVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         I +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPNEKDFPYTIRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLIKSGEHYS 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T++G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTENG-VTALQMDIKIDGLSREILDEALQQAKKGRMQILN 536

Query: 233 LQKDVISNE 241
                I+  
Sbjct: 537 HMMSTIATP 545



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 93/232 (40%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++ +    ++K A G+ L+++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RKLEVEVGQLAKQANGAALIRYGDTVVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  +  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSVVMSVDQNCSSEI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A +  G +    +V+    E    D+
Sbjct: 129 AAMFGSSLALS-------------VSDIPFEGPIAGVIVGRVDNEFVVNPTVDELEKSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                 T    I  V+  A+     ++     +    ++I  LI  Q+++++
Sbjct: 176 HLTVAGTKDA-INMVEAGADEVP--EEVMLEAIMFGHEQIKKLIAFQEEIVA 224


>gi|114798182|ref|YP_762114.1| polynucleotide phosphorylase/polyadenylase [Hyphomonas neptunium
           ATCC 15444]
 gi|123128295|sp|Q0BWM9|PNP_HYPNA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|114738356|gb|ABI76481.1| polyribonucleotide nucleotidyltransferase [Hyphomonas neptunium
           ATCC 15444]
          Length = 713

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 94/241 (39%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR+ +Q+R I           GS L   G+T  +  ATL    +E+    +  TK  
Sbjct: 317 RIDGRKLDQIRPIVAEAGFLPRTHGSSLFTRGETQAICVATLGTSDDEQYIDGLDGTKKE 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      ++  RAL++V+         I +  +
Sbjct: 377 KFMLHYNFPPYSVGETGRMGGAGRREIGHG----KLAWRALKAVLPKHEDFPYTIRMVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +A+ D    +    +   +  +L+G   A+         + D+
Sbjct: 433 ITESNGSSSMATVCGCSLAMMDAGVPLTRPVSGIAMGLILEGSEFAV---------LSDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G +  +Q   + A  ++D     L  AK     ++      
Sbjct: 484 LGDEDHLGDMDFKVAGTENG-VTSLQMDIKVAGITKDIMGKALEQAKGGRMHILGEMGKA 542

Query: 238 I 238
           +
Sbjct: 543 L 543



 Score = 82.1 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 84/239 (35%), Gaps = 44/239 (18%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R +++    V++ A+G+ +V++GDT +L TA   ++            +T  Y     ++
Sbjct: 14  RTLTIETGQVARQADGAVMVQYGDTIVLATAVFAKEAKP---GQDFFPLTVNYQEKYFAS 70

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G       KRE   GR   +     R+I R +R +         Q+++       +    
Sbjct: 71  GRIPGGFFKRE---GRPTEKETLTSRLIDRPIRPLFVDGFKHEVQVVVTTLSYDLENDAD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                     G + A   G   G  I++    E    +
Sbjct: 128 IIALVGASAALVLSGA-------------PFMGPIGAARVGYKDGQYIINPTIAELEESE 174

Query: 187 VDANFV-MTDSGHIVEVQGSAERATFSQDHF---------------FAMLNLAKDRIAD 229
           +D      TD+  +VE Q     A  S+D                  A++ LA+    +
Sbjct: 175 LDLVVAGTTDAVMMVESQA----AELSEDVMLGAVVAGHDAMQPVIDAIIALAEKAAKE 229


>gi|294011612|ref|YP_003545072.1| polyribonucleotide nucleotidyltransferase [Sphingobium japonicum
           UT26S]
 gi|292674942|dbj|BAI96460.1| polyribonucleotide nucleotidyltransferase [Sphingobium japonicum
           UT26S]
          Length = 771

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 95/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR   Q+R I           GS L   G+T  + T TL  K    + +   G    
Sbjct: 316 RIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGLTGLHYE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G      ++  RAL  V+         I +  D
Sbjct: 376 SFMLHYNFPPYSVGEVGRFGAPGRREVGHG----KLAWRALHPVLPSKEEFPYTIRVLSD 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +++ D    ++   +   +  +L+G   A+         I D+
Sbjct: 432 ITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKEFAV---------ISDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   + A  +Q+ F   L  AK+  A ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTEAG-ITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMSKA 541

Query: 238 ISN 240
           +S+
Sbjct: 542 LSS 544



 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 76/225 (33%), Gaps = 27/225 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           ++L    +++ A+ + L  +G+T +L   T  + V           +T  Y     S   
Sbjct: 16  LTLETGRIARQADAAVLATYGETVVLCAVTAAKSV---KEGQDFFPLTVHYQ-EKYSAAG 71

Query: 73  RVKREAVSGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTA 128
           R+        +G   +E  + R+I R +R +          I +   V+  DG       
Sbjct: 72  RIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNE--INVIAQVLSFDGESEPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+  A  AL                     G + A   G   G   ++    E  T ++D
Sbjct: 130 AMIAASAAL-------------TLSGVPFLGPIGAARVGYKDGEYQLNPSLDEVKTGELD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
                T +  ++ V+  +E    S+D     +  A +    ++  
Sbjct: 177 LVVAATGNA-VMMVE--SEAKELSEDVMLGAVLFAHEASKKVVNA 218


>gi|225551703|ref|ZP_03772647.1| polyribonucleotide nucleotidyltransferase [Borrelia sp. SV1]
 gi|225371730|gb|EEH01156.1| polyribonucleotide nucleotidyltransferase [Borrelia sp. SV1]
          Length = 722

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 93/248 (37%), Gaps = 27/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR  N++R+I     +     GS L   G+T  L       +++E++   I   K 
Sbjct: 315 IRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G    R     R+ G       +  RAL S+V         I +  
Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A +    ++L                   +KG VA I+ G++       
Sbjct: 430 EVLESNGSSSMATVCAGSMSLMSAGV-------------PVKGQVAGIAMGLISEGDKYV 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I   Q   +    ++D     L  A+     ++ 
Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKDLMRDALEQARIGRIHILS 535

Query: 233 LQKDVISN 240
           +   VISN
Sbjct: 536 IMNTVISN 543



 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 86/239 (35%), Gaps = 32/239 (13%)

Query: 5   GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59
           GR  +++           K A GS L  +G + +L T      + E +     + ++   
Sbjct: 10  GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPFSVEYNEK 64

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
               G +P   G  +KRE   G+   +   + R+I R +R + D       Q+I      
Sbjct: 65  YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
                     +  A+ A+             F       G +AA+    L G  IV+  +
Sbjct: 119 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGKFIVNPSF 165

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E    D+D   V      I  V+G A     S+D   + ++ A + I  +   QK+ +
Sbjct: 166 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VSEDILLSAIDGAHEYIKQICNAQKEFL 221


>gi|332976846|gb|EGK13671.1| polyribonucleotide nucleotidyltransferase [Desmospora sp. 8437]
          Length = 697

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 84/248 (33%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKHG 57
           R  GR   ++R ++    +     GS   + G T +L   T  A  + ++   +   +  
Sbjct: 315 RPDGRSPEEIRPLTSEVGILPRTHGSGHFRRGQTQVLSVCTLGALGDVQILDGLDLEESK 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G          R+ G       +  RAL  V+         I +  +
Sbjct: 375 RFMHHYNFPPYSVGESRPMRGPGRREIGHG----ALGERALEPVIPSEEEFPYTIRLVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           V++++G T  A+I  + +AL D                 +K  VA I+ G++        
Sbjct: 431 VLESNGSTSQASICASTLALMDAGV-------------PIKDPVAGIAMGLVKEGDQVTV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +     ++     L  A      L+  
Sbjct: 478 LTDIQGMEDHLGDMDFKVAGTRKG-VTALQMDIKIEEIDREVLSQALQQAHRARHVLLDN 536

Query: 234 QKDVISNE 241
               +   
Sbjct: 537 MTATLGEP 544



 Score = 96.7 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 89/234 (38%), Gaps = 28/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R +++     +  A G+ LV++GDT ++ TAT  ++     ++     +T  Y     + 
Sbjct: 14  RRLTMEVGKYANQANGAVLVRYGDTAVMATATASDE----PKDLGFFPLTVNYEERLYAV 69

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G      +KRE   GR   ++    R+I R +R +         Q++     +  D  T 
Sbjct: 70  GKIPGGFIKRE---GRPSEKAILASRLIDRPIRPLFPEGYRNDVQVVTTVMSVDQDCSTE 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA  AL                     G +A +  G + G  +++    +    D
Sbjct: 127 IAAMIGASTALS-------------ISDIPFAGPIAGVIVGRVNGKWVLNPSVEQAEKSD 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T  G I  V+  A+     ++     +    + I ++I  Q+ ++  
Sbjct: 174 LHLVVAGTKHG-INMVEAGADEVP--EEVMLEGILFGHEAIKEMIAFQEKIVGQ 224


>gi|315051732|ref|XP_003175240.1| exosome complex exonuclease RRP41 [Arthroderma gypseum CBS 118893]
 gi|311340555|gb|EFQ99757.1| exosome complex exonuclease RRP41 [Arthroderma gypseum CBS 118893]
          Length = 278

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 81/247 (32%), Gaps = 10/247 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWI 59
           +RL GR+ N++R +      +  + GS  +  G+T +L T     +             I
Sbjct: 14  LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGR--SQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                +   +  +R K+ A     G R  + E+  ++  A +  +         I I   
Sbjct: 74  NVVVNLAGFANVDRKKKSATGSGGGDRQATTELANLLRDAFQPHIHAHLYPRSTISIHVS 133

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC-----GMLCGY 172
           V+ +DG    A +    +AL D    M       +    L    A          +    
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGWGGINESLDPLLDISAPEEVELPYMTVANTN 193

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           P+ D++   D   + D  +   +   ++ +      +     +   M  +  D      +
Sbjct: 194 PMPDINVPRDDEDEEDDEYDAENENQMLSIV--HMDSGVHVSYLETMFAVGIDGCKQTRE 251

Query: 233 LQKDVIS 239
           +   V+ 
Sbjct: 252 ILNGVLK 258


>gi|306820072|ref|ZP_07453720.1| polyribonucleotide nucleotidyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551850|gb|EFM39793.1| polyribonucleotide nucleotidyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 690

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 89/249 (35%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R   R + ++R I     V     GS +   G T +L+ ATL    E +    +   + 
Sbjct: 311 VRPDNRAQEEIRPIWCEAGVLPRTHGSAIFTRGQTQVLSVATLAGLSEAQTIDGLDEEEE 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G        S   G R      +  RA+  ++         I +  
Sbjct: 371 RRYMHHYNFPAFSVGEAR----ASRGPGRREIGHGALAQRAIEPLLPSEEEFPYTIRVVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V+ ++G T  A++ G+ + L D    M             K  VA I+ G++       
Sbjct: 427 EVMSSNGSTSQASVCGSTLCLLDAGVPM-------------KDMVAGIAMGLIKDEEDVV 473

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T+ G I  +Q   + +   +D     L  A++    ++ 
Sbjct: 474 ILSDIQGMEDFLGDMDFKVAGTEKG-ITAIQMDIKISGIDEDILKRALAQAREGRLHILG 532

Query: 233 LQKDVISNE 241
             + VI   
Sbjct: 533 EMRKVIDKP 541



 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 87/236 (36%), Gaps = 28/236 (11%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++        A G+C +++GDT LL TAT     +E +  +  +          G +
Sbjct: 12  RTLTVETGKLAQMANGACTLRYGDTVLLVTATNSAKPKEGIDFFPLSVDFEEKLYSAGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+ ++RE   G+   ++    R+I R +R +         Q++     +  D    
Sbjct: 72  P---GSFIRRE---GKPSEKAILTSRLIDRPIRPLFPKGYRNDVQVVATVLSVDIDHNP- 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                       D +  +         S    G   ++S G++ G  I++  + +    D
Sbjct: 125 ------------DTIAMIGSSIALSISSIPFNGPTGSVSVGLVDGQFIINPTFEQREKSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           +      T    I+ V+  +     S++     +  A + I  +       I+NE+
Sbjct: 173 MYLVVSGTKDA-IMMVEAGSNE--VSEEVMLNAILFAHEEIKKICDFV-QSIANEI 224


>gi|30248196|ref|NP_840266.1| polynucleotide phosphorylase/polyadenylase [Nitrosomonas europaea
           ATCC 19718]
 gi|81584849|sp|Q82XT0|PNP_NITEU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|30180081|emb|CAD84083.1| pnp; polyribonucleotide nucleotidyltransferase protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 708

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 98/246 (39%), Gaps = 28/246 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-----TATLEEKVPMWIRNTKH 56
           R+ GR    +R I++   V     GS L   G+T  L      TA  E+K+   ++    
Sbjct: 315 RIDGRGTRTVRPITIRHGVLPRTHGSALFTRGETQALAITTLGTARDEQKIDA-LQGDYS 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y M P +TG   +      R+ G      R+  RAL +V+         + +  
Sbjct: 374 ERFMLHYNMPPFATGETGRVGTPKRREIGHG----RLAKRALLAVIPPVEEFGYSMRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V +++G +  A++ G  ++L D                 LK HVA I+ G++       
Sbjct: 430 EVTESNGSSSMASVCGGCLSLMDAGV-------------PLKAHVAGIAMGLIKEGNRFA 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T+ G I  +Q   +    +++     L  AK+    +++
Sbjct: 477 VLTDILGDEDHLGDMDFKVAGTEHG-ITALQMDIKIQGITKEIMQVALLQAKEGRLHILE 535

Query: 233 LQKDVI 238
           + K  +
Sbjct: 536 IMKQSL 541



 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 81/237 (34%), Gaps = 36/237 (15%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           +++    ++K A G+ +V   DT +L TA  +         +     +       G +P 
Sbjct: 15  LTIETGEIAKQAHGAVIVSMDDTVVLVTAVGDKKTKPGQDFFPLTVDYQEKFYSAGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV----IQADGG 124
             G+  KRE   GR   +     R+I R +R +         Q++         I AD  
Sbjct: 74  --GSFFKRE---GRPSEKETLTSRLIDRPIRPLFPDGFYNEVQVVAMVLSSDTEIDAD-- 126

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+ G   AL                     G V A   G +    I++        
Sbjct: 127 --IPAMIGTSAALILSGI-------------PFDGPVGAARVGYINNEYILNPTTT--QL 169

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
            +   N V+  +   V +  S E    S+D     +    D++  +I +  + +++E
Sbjct: 170 KESQLNLVVAGTQKAVLMVES-EADELSEDVMLGAVTYGHDQMQQVIDMINE-LADE 224


>gi|195941985|ref|ZP_03087367.1| polynucleotide phosphorylase/polyadenylase [Borrelia burgdorferi
           80a]
 gi|312147830|gb|ADQ30489.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           JD1]
          Length = 716

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 93/248 (37%), Gaps = 27/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR  N++R+I     +     GS L   G+T  L       +++E++   I   K 
Sbjct: 309 IRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 368

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G    R     R+ G       +  RAL S+V         I +  
Sbjct: 369 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 423

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A +    ++L                   +KG VA I+ G++       
Sbjct: 424 EVLESNGSSSMATVCAGSMSLMSAGV-------------PVKGQVAGIAMGLISEGDKYV 470

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I   Q   +    ++D     L  A+     ++ 
Sbjct: 471 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKDLMRDALEQARIGRIHILS 529

Query: 233 LQKDVISN 240
           +   VISN
Sbjct: 530 IMNTVISN 537



 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 85/239 (35%), Gaps = 32/239 (13%)

Query: 5   GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59
           GR  +++           K A GS L  +G + +L T      + E +     + ++   
Sbjct: 4   GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEK 58

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
               G +P   G  +KRE   G+   +   + R+I R +R + D       Q+I      
Sbjct: 59  YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 112

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
                     +  A+ A+             F       G +AA+    L G  IV+  +
Sbjct: 113 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGKFIVNPSF 159

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E    D+D   V      I  V+G A      +D   + ++ A + I  +   QK+ +
Sbjct: 160 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VGEDILLSAIDGAHEYIKQICNAQKEFL 215


>gi|303229604|ref|ZP_07316392.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515729|gb|EFL57683.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 689

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 94/250 (37%), Gaps = 28/250 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRN----TK 55
           +R  GR+ +++R IS    V     GS L   G T +L  AT+        I      T+
Sbjct: 309 IRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSEKQTIDGIGLETE 368

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I   Y     S G          R+ G       +  RAL  V+         + + 
Sbjct: 369 KRYIH-HYNFPSFSVGETRSSRGPGRREIGHG----ALAERALVPVIPSEEEFPYALRLV 423

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V++++G +  A++ G+ ++L D                 +K  VA I+ G++      
Sbjct: 424 SEVLESNGSSSMASVCGSTLSLMDAGV-------------PIKAPVAGIAMGLVTQGEHY 470

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED+  D+D     T  G +  +Q   + +  S++     L  A      ++
Sbjct: 471 TILTDIQGMEDALGDMDFKVAGTAKG-VTAIQMDIKISGLSREILHEALEQAHKGRMHIM 529

Query: 232 KLQKDVISNE 241
            +  D I+  
Sbjct: 530 GIMLDTIAEP 539



 Score = 88.2 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 28/231 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ +V +GDT +L TAT  ++   +  +     +       G LP
Sbjct: 11  RTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVDYEEKMYAIGRLP 70

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KREA   R    +    R+I R +R + D        ++     +  D     
Sbjct: 71  ---GGFIKREA---RPPESAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQDCDPAI 124

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
             + GA  AL                     G +A +  G + G  +V+         + 
Sbjct: 125 CGMIGASAALS-------------ISDIPWAGPIAGVRMGRVNGEFVVNPTKA--QLEET 169

Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           D N V+      I+ V+G A+     ++    ++  A + I  ++  Q+DV
Sbjct: 170 DLNIVVAGTKDAILMVEGGAQEVP--EETILEVIMAAHEEIKKIVAFQEDV 218


>gi|220931634|ref|YP_002508542.1| Polyribonucleotide nucleotidyltransferase [Halothermothrix orenii H
           168]
 gi|254782723|sp|B8CW78|PNP_HALOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219992944|gb|ACL69547.1| Polyribonucleotide nucleotidyltransferase [Halothermothrix orenii H
           168]
          Length = 705

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 93/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ +++R I           GS +   G T  L+  TL    +E++   +   + 
Sbjct: 320 IRPDGRKPDEIRPIWCEVGTLPRVHGSGVFTRGQTQALSVVTLGATSDEQILFGLGEEET 379

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      +     G R      +  RAL+ V+         I +  
Sbjct: 380 KRYMHHYNFPPYSVGE----TSPLRSPGRREIGHGALGERALQPVIPDQEEFPYTIRVVS 435

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +AL D                 +K  VA I+ G+L       
Sbjct: 436 EVLESNGSTSQASICGSTLALMDAGV-------------PIKEPVAGIAMGLLKEDEKVV 482

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I  +Q   +    S++     L  A++    ++ 
Sbjct: 483 ILSDIQGLEDFYGDMDFKVAGTRNG-ITALQMDIKIHGISKEILKKALKRAREGRLYILD 541

Query: 233 LQKDVISNE 241
               VI   
Sbjct: 542 KMLQVIDKP 550



 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 84/228 (36%), Gaps = 26/228 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++       +K A GS + ++GDT +L TAT     E +  +     +       G +P 
Sbjct: 13  KMKFETGKYAKQANGSVVARYGDTTVLVTATMSEPREGIDYFPLMVNYEERVYAIGKIPG 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
           S     +RE   GR    +    R+I R LR +         QII     +  D      
Sbjct: 73  SI---TRRE---GRPRDVATLAARLIDRPLRPLFPEGFRHDVQIIATVLSVDNDCEPDIL 126

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA VAL                     G +  +  G++ G  +++ D  E     +D
Sbjct: 127 ALNGASVAL-------------TLSDIPFDGPIGGVKVGLVDGELVINPDEEEREKSKLD 173

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T    ++ V+  A     S+D     + LA   I  L+ LQ++
Sbjct: 174 LTVAGTRDA-VLMVEAGANE--VSEDVMLDAIELAHQEIKRLVLLQEE 218


>gi|303232084|ref|ZP_07318787.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513190|gb|EFL55229.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 689

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 94/250 (37%), Gaps = 28/250 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRN----TK 55
           +R  GR+ +++R IS    V     GS L   G T +L  AT+        I      T+
Sbjct: 309 IRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSEKQTIDGIGLETE 368

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I   Y     S G          R+ G       +  RAL  V+         + + 
Sbjct: 369 KRYIH-HYNFPSFSVGETRSSRGPGRREIGHG----ALAERALVPVIPSEEEFPYALRLV 423

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V++++G +  A++ G+ ++L D                 +K  VA I+ G++      
Sbjct: 424 SEVLESNGSSSMASVCGSTLSLMDAGV-------------PIKAPVAGIAMGLVTQGEHY 470

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED+  D+D     T  G +  +Q   + +  S++     L  A      ++
Sbjct: 471 TILTDIQGMEDALGDMDFKVAGTAKG-VTAIQMDIKISGLSREILHEALEQAHKGRMHIM 529

Query: 232 KLQKDVISNE 241
            +  D I+  
Sbjct: 530 GIMLDTIAEP 539



 Score = 88.2 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 28/231 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ +V +GDT +L TAT  ++   +  +     +       G LP
Sbjct: 11  RTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVDYEEKMYAIGRLP 70

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KREA   R    +    R+I R +R + D        ++     +  D     
Sbjct: 71  ---GGFIKREA---RPPESAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQDCDPAI 124

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
             + GA  AL                     G +A +  G + G  +V+         + 
Sbjct: 125 CGMIGASAALS-------------ISDIPWAGPIAGVRMGRVNGEFVVNPTKA--QLEET 169

Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           D N V+      I+ V+G A+     ++    ++  A + I  ++  Q+DV
Sbjct: 170 DLNIVVAGTKDAILMVEGGAQEVP--EETILEVIMAAHEEIKKIVAFQEDV 218


>gi|166154186|ref|YP_001654304.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           434/Bu]
 gi|166155061|ref|YP_001653316.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335431|ref|ZP_07223675.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
           L2tet1]
 gi|226702634|sp|B0B971|PNP_CHLT2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702636|sp|B0BAV0|PNP_CHLTB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|165930174|emb|CAP03658.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
           434/Bu]
 gi|165931049|emb|CAP06612.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 695

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 94/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKH 56
           +R+ GR   ++R IS+   +     GSCL   G+T    + T   E     +  +     
Sbjct: 314 IRVDGRTTTEIRPISIETPLLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDGA 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +     G  G R     ++  +AL  V+  ++     I ++ 
Sbjct: 374 ARFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHVLPETSRFPYIIRLES 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++ +++G +  A++ G  +AL D                 +K  VA I+ G++       
Sbjct: 430 NITESNGSSSMASVCGGCLALMDAGV-------------PIKAPVAGIAMGLILDRDQAI 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I   Q   +    +       L  AK   + ++ 
Sbjct: 477 ILSDISGIEDHLGDMDFKVAGTAKG-ITAFQMDIKIEGITHKIMEQALAQAKQGRSHILN 535

Query: 233 LQKDVISNE 241
           L   V+++ 
Sbjct: 536 LMTQVLASP 544



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 87/238 (36%), Gaps = 39/238 (16%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
                +++ A G+ LVK  +T +      A+L E V   P  +   +       +    R
Sbjct: 18  FETGKIARQASGAVLVKMNETWVFSSACAASLSEAVGFLPFRVDYQEK------FSSAGR 71

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR-- 126
           ++G  +KRE   GR   R   + R+I R+LR       +   Q++        DG T   
Sbjct: 72  TSGGFLKRE---GRPSEREILVSRLIDRSLRPSFPNRLMQDIQVLSYVW--SYDGKTLPD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI GA  AL                       +A +  G++ G  +++    E S   
Sbjct: 127 PLAICGASAALA-------------ISEVPQNCIIAGVRVGLVGGKWVINPTRDELSASK 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL---IKLQKDVISNE 241
           +D     T S  ++ ++G       +++     +   +  IA +   I+  +  I  +
Sbjct: 174 LDLVMAGTASA-VLMIEG--HCDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQ 228


>gi|88607778|ref|YP_505346.1| polynucleotide phosphorylase/polyadenylase [Anaplasma
           phagocytophilum HZ]
 gi|123494955|sp|Q2GJV5|PNP_ANAPZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|88598841|gb|ABD44311.1| polyribonucleotide nucleotidyltransferase [Anaplasma
           phagocytophilum HZ]
          Length = 838

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 92/244 (37%), Gaps = 20/244 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-TATLEEK----VPMWIRNTKH 56
           R+ GR  +Q+R I +   +   A GS L   GDT  L  TA    +    V  +  + + 
Sbjct: 323 RIDGRAYDQIRNIEIEVDLISKAHGSALFTRGDTQALVITALGTPQDEQIVDGFDGDKRE 382

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++   Y   P + G      +     G R     ++  RA+  V+   A     I +  
Sbjct: 383 RFL-LHYNFPPYAVGE----ASALRPPGRREIGHGKLAWRAIHPVLPSKADFPYTIRVVS 437

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++ ++DG +  A + GA +AL D    ++       +  + +G   AI         + D
Sbjct: 438 EITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDRYAI---------LSD 488

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I  +Q   +            L+ AK+    +I+    
Sbjct: 489 ILGDEDYLGDMDFKVAGTREG-ITALQMDMKVKGIDFAVLGTALDQAKEGRFFIIEKMDR 547

Query: 237 VISN 240
           VI  
Sbjct: 548 VIKE 551



 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 87/230 (37%), Gaps = 32/230 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R +++    +++ A G+ +V +G T +L T      +E V       +    +   G +P
Sbjct: 14  RSLTIESGKIARQAGGAVVVDYGGTSVLATVVSQKSKEAVDFLPLTVQFLAKSYAVGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG--T 125
              G   KRE   G+   R   I R+I R++R +          + + C+++  D     
Sbjct: 74  ---GGFFKRE---GKPSDRETLISRIIDRSIRPLFPSGFSDE--VAVVCNLLSYDASSPP 125

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGYPIVDLDYGEDS 183
            T A+ GA  AL                       VA    G +   G  I++    E S
Sbjct: 126 ETVALIGASAALAISGI-------------PFHCPVAGARIGYIRGEGRYILNPSADELS 172

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
              +D  +  TD+  I+ V+  +E    ++      L    +   ++IK+
Sbjct: 173 VSALDMFYARTDT-SILMVE--SEAHELTEAEMLGALQFGHEHCEEIIKV 219


>gi|224533452|ref|ZP_03674045.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           CA-11.2a]
 gi|224513414|gb|EEF83772.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           CA-11.2a]
          Length = 722

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 93/248 (37%), Gaps = 27/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR  N++R+I     +     GS L   G+T  L       +++E++   I   K 
Sbjct: 315 IRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G    R     R+ G       +  RAL S+V         I +  
Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A +    ++L                   +KG VA I+ G++       
Sbjct: 430 EVLESNGSSSMATVCAGSMSLMSAGV-------------PVKGQVAGIAMGLISEGDKYV 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I   Q   +    ++D     L  A+     ++ 
Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKDLMRDALEQARIGRIHILS 535

Query: 233 LQKDVISN 240
           +   VISN
Sbjct: 536 IMNTVISN 543



 Score = 89.0 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 85/239 (35%), Gaps = 32/239 (13%)

Query: 5   GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59
           GR  +++           K A GS L  +G + +L T      + E +     + ++   
Sbjct: 10  GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEK 64

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
               G +P   G  +KRE   G+   +   + R+I R +R + D       Q+I      
Sbjct: 65  YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
                     +  A+ A+             F       G +AA+    L G  IV+  +
Sbjct: 119 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGKFIVNPSF 165

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E    D+D   V      I  V+G A      +D   + ++ A + I  +   QK+ +
Sbjct: 166 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VGEDILLSAIDGAHEYIKQICNAQKEFL 221


>gi|226320852|ref|ZP_03796404.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           29805]
 gi|226233718|gb|EEH32447.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           29805]
          Length = 722

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 93/248 (37%), Gaps = 27/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR  N++R+I     +     GS L   G+T  L       +++E++   I   K 
Sbjct: 315 IRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G    R     R+ G       +  RAL S+V         I +  
Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A +    ++L                   +KG VA I+ G++       
Sbjct: 430 EVLESNGSSSMATVCAGSMSLMSAGV-------------PVKGQVAGIAMGLISEGDKYV 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I   Q   +    ++D     L  A+     ++ 
Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKDLMRDALEQARIGRIHILS 535

Query: 233 LQKDVISN 240
           +   VISN
Sbjct: 536 IMNTVISN 543



 Score = 89.0 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 85/239 (35%), Gaps = 32/239 (13%)

Query: 5   GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59
           GR  +++           K A GS L  +G + +L T      + E +     + ++   
Sbjct: 10  GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEK 64

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
               G +P   G  +KRE   G+   +   + R+I R +R + D       Q+I      
Sbjct: 65  YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
                     +  A+ A+             F       G +AA+    L G  IV+  +
Sbjct: 119 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGKFIVNPSF 165

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E    D+D   V      I  V+G A      +D   + ++ A + I  +   QK+ +
Sbjct: 166 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VGEDILLSAIDGAHEYIKQICNAQKEFL 221


>gi|221217569|ref|ZP_03589038.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia burgdorferi 72a]
 gi|225549375|ref|ZP_03770347.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           94a]
 gi|225550249|ref|ZP_03771208.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           118a]
 gi|221192515|gb|EEE18733.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia burgdorferi 72a]
 gi|225369117|gb|EEG98571.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           118a]
 gi|225370003|gb|EEG99444.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           94a]
          Length = 722

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 93/248 (37%), Gaps = 27/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR  N++R+I     +     GS L   G+T  L       +++E++   I   K 
Sbjct: 315 IRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G    R     R+ G       +  RAL S+V         I +  
Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A +    ++L                   +KG VA I+ G++       
Sbjct: 430 EVLESNGSSSMATVCAGSMSLMSAGV-------------PVKGQVAGIAMGLISEGDKYV 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I   Q   +    ++D     L  A+     ++ 
Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKDLMRDALEQARIGRIHILS 535

Query: 233 LQKDVISN 240
           +   VISN
Sbjct: 536 IMNTVISN 543



 Score = 89.0 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 85/239 (35%), Gaps = 32/239 (13%)

Query: 5   GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59
           GR  +++           K A GS L  +G + +L T      + E +     + ++   
Sbjct: 10  GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEK 64

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
               G +P   G  +KRE   G+   +   + R+I R +R + D       Q+I      
Sbjct: 65  YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
                     +  A+ A+             F       G +AA+    L G  IV+  +
Sbjct: 119 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGKFIVNPSF 165

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E    D+D   V      I  V+G A      +D   + ++ A + I  +   QK+ +
Sbjct: 166 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VGEDILLSAIDGAHEYIKQICNAQKEFL 221


>gi|15595150|ref|NP_212939.1| polynucleotide phosphorylase/polyadenylase [Borrelia burgdorferi
           B31]
 gi|216264741|ref|ZP_03436733.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia burgdorferi
           156a]
 gi|218249358|ref|YP_002375304.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia burgdorferi ZS7]
 gi|223889336|ref|ZP_03623923.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia burgdorferi 64b]
 gi|226321270|ref|ZP_03796798.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           Bol26]
 gi|81343023|sp|O51745|PNP_BORBU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702621|sp|B7J0Q1|PNP_BORBZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|2688743|gb|AAC67149.1| polyribonucleotide nucleotidyltransferase (pnpA) [Borrelia
           burgdorferi B31]
 gi|215981214|gb|EEC22021.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia burgdorferi
           156a]
 gi|218164546|gb|ACK74607.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia burgdorferi ZS7]
 gi|223885257|gb|EEF56360.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia burgdorferi 64b]
 gi|226233302|gb|EEH32053.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           Bol26]
          Length = 722

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 93/248 (37%), Gaps = 27/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR  N++R+I     +     GS L   G+T  L       +++E++   I   K 
Sbjct: 315 IRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G    R     R+ G       +  RAL S+V         I +  
Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A +    ++L                   +KG VA I+ G++       
Sbjct: 430 EVLESNGSSSMATVCAGSMSLMSAGV-------------PVKGQVAGIAMGLISEGDKYV 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I   Q   +    ++D     L  A+     ++ 
Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKDLMRDALEQARIGRIHILS 535

Query: 233 LQKDVISN 240
           +   VISN
Sbjct: 536 IMNTVISN 543



 Score = 89.0 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 85/239 (35%), Gaps = 32/239 (13%)

Query: 5   GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59
           GR  +++           K A GS L  +G + +L T      + E +     + ++   
Sbjct: 10  GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEK 64

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
               G +P   G  +KRE   G+   +   + R+I R +R + D       Q+I      
Sbjct: 65  YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
                     +  A+ A+             F       G +AA+    L G  IV+  +
Sbjct: 119 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGKFIVNPSF 165

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E    D+D   V      I  V+G A      +D   + ++ A + I  +   QK+ +
Sbjct: 166 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VGEDILLSAIDGAHEYIKQICNAQKEFL 221


>gi|313892760|ref|ZP_07826341.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442691|gb|EFR61102.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 689

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 95/250 (38%), Gaps = 28/250 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRN----TK 55
           +R  GR+ +++R IS    V     GS L   G T +L  AT+        I      T+
Sbjct: 309 IRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSETQTIDGIGIETE 368

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I   Y     S G          R+ G       +  RAL  V+   A     + + 
Sbjct: 369 KRYIH-HYNFPSFSVGETRSSRGPGRREIGHG----ALAERALVPVIPSEADFPYALRLV 423

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V++++G +  A++ G+ ++L D                 +K  VA I+ G++      
Sbjct: 424 SEVLESNGSSSMASVCGSTLSLMDAGV-------------PIKAPVAGIAMGLVTQGEHY 470

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED+  D+D     T  G +  +Q   + +  S++     L  A      ++
Sbjct: 471 TILTDIQGMEDALGDMDFKVAGTAKG-VTAIQMDIKISGLSREILQEALEQAHKGRMHIM 529

Query: 232 KLQKDVISNE 241
            +  D I+  
Sbjct: 530 GIMLDTIAEP 539



 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 89/231 (38%), Gaps = 28/231 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ +V +GDT +L TAT  ++   +  +     +       G LP
Sbjct: 11  RTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVDYEEKMYAVGRLP 70

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KREA   R    +    R+I R +R + D        ++     +  D     
Sbjct: 71  ---GGFIKREA---RPPETAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQDCDPAV 124

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
             + GA  AL                     G +A +  G + G  +V+         + 
Sbjct: 125 CGMIGASAALS-------------ISDVPWNGPIAGVRMGRINGEFVVNPTKA--QLEET 169

Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           D N V+      I+ V+G AE     +D    ++  A + I  ++  Q+D+
Sbjct: 170 DLNIVVAGTKDAILMVEGGAEEVP--EDIILEVIMAAHEEIKKIVAFQEDM 218


>gi|220934183|ref|YP_002513082.1| Polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|254782744|sp|B8GP06|PNP_THISH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219995493|gb|ACL72095.1| Polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 693

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 91/244 (37%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR    +R I++   V     GS L   G+T  +  ATL       +       +  
Sbjct: 315 RIDGRDTRTVRPITVKTGVLPRTHGSALFTRGETQAIVVATLGTDRDAQLIEAIEGERRE 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P  TG      +   R+ G      R+  R +++V+   A     + +  +
Sbjct: 375 RFMLHYNFPPFCTGETGMVGSPKRREIGHG----RLAKRGVQAVMPGEAECPYVLRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    ++       +  + +G   A+         I D+
Sbjct: 431 ITESNGSSSMASVCGTSLALMDAGVPLKAPVAGIAMGLIKEGDAFAV---------ISDI 481

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     +  G +  +Q   +    +++     L  AK+    +++    V
Sbjct: 482 LGDEDHLGDMDFKVAGSKDG-VSALQMDIKIDGITREIMEKALAQAKEGRLHILEKMNAV 540

Query: 238 ISNE 241
           +S  
Sbjct: 541 LSEP 544



 Score = 76.7 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 79/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++     +++ A G+ LV   DT +L TA   + V    +      +T  Y     + G 
Sbjct: 15  VTFETGEIARQASGAVLVNMADTVVLVTAVGLKDV---AQGRDFFPLTVNYQERTYAAGR 71

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR   +     R+I R +R +     +   Q+I     +  +      
Sbjct: 72  IPGGFFKRE---GRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVMSMNPEVDPDVP 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                    KG + A   G L G  +++    E    D+D
Sbjct: 129 AMLGASAALALSGL-------------PFKGPIGAARVGYLNGAYVLNPSMSELKHSDLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
                T+   ++     +E    S++     +    +     I  + +L  + 
Sbjct: 176 LVVAGTEKAVLMV---ESEAKLLSEEVMLGAVMYGHEQMQAAIKVINELAAEA 225


>gi|312149591|gb|ADQ29662.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           N40]
          Length = 716

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 93/248 (37%), Gaps = 27/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR  N++R+I     +     GS L   G+T  L       +++E++   I   K 
Sbjct: 309 IRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 368

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G    R     R+ G       +  RAL S+V         I +  
Sbjct: 369 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 423

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A +    ++L                   +KG VA I+ G++       
Sbjct: 424 EVLESNGSSSMATVCAGSMSLMSAGV-------------PVKGQVAGIAMGLISEGDKYV 470

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I   Q   +    ++D     L  A+     ++ 
Sbjct: 471 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKDLMRDALEQARIGRIHILS 529

Query: 233 LQKDVISN 240
           +   VISN
Sbjct: 530 IMNTVISN 537



 Score = 88.6 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 85/239 (35%), Gaps = 32/239 (13%)

Query: 5   GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59
           GR  +++           K A GS L  +G + +L T      + E +     + ++   
Sbjct: 4   GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEK 58

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
               G +P   G  +KRE   G+   +   + R+I R +R + D       Q+I      
Sbjct: 59  YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 112

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
                     +  A+ A+             F       G +AA+    L G  IV+  +
Sbjct: 113 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGKFIVNPSF 159

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E    D+D   V      I  V+G A      +D   + ++ A + I  +   QK+ +
Sbjct: 160 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VGEDILLSAIDGAHEYIKQICNAQKEFL 215


>gi|78187489|ref|YP_375532.1| polynucleotide phosphorylase/polyadenylase [Chlorobium luteolum DSM
           273]
 gi|123582727|sp|Q3B2E2|PNP_PELLD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78167391|gb|ABB24489.1| Polyribonucleotide nucleotidyltransferase [Chlorobium luteolum DSM
           273]
          Length = 732

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 87/241 (36%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           RL GR   Q+R I++   V   A GS L   G+T  L   TL  K        + N+   
Sbjct: 332 RLDGRNLEQVRPITIELGVIPRAHGSALFTRGETQALVAVTLGTKKDAQSVDTLTNSADK 391

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  R+++ V          + I  +
Sbjct: 392 RFMLHYNFPPFSVGEVGRLGSTGRREIGHG----NLAERSIKMVAPGEQEFPYTVRIVSE 447

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +++++G +  A++ G  +AL D    ++   +   +  +  G   A+         + D+
Sbjct: 448 ILESNGSSSMASVCGGTLALMDGGVPLKKPVSGIAMGLIKDGEEYAV---------LSDI 498

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I   Q   +            L  A+     ++   ++ 
Sbjct: 499 LGNEDHLGDMDFKVAGTRDG-ITACQMDIKIDGLDYHILENALAQARRGRFHILDKMEEA 557

Query: 238 I 238
           I
Sbjct: 558 I 558



 Score = 99.0 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 88/235 (37%), Gaps = 29/235 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVP-----MWIRNTKHGWITAEYGMLP 67
           IS+      K A+G+ +V+ GDT ++ T     K P      +    ++       G  P
Sbjct: 15  ISIETGRMAKQADGATVVRMGDTMVIATVVSSRKTPSVNQDFFPLQVEYREKYYAAGKFP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KREA   R   +     R+I RALR +         Q+II+  VI +D     
Sbjct: 75  ---GGFFKREA---RPSEKEILSARLIDRALRPLFPTGYYHETQVIIN--VISSDQQN-D 125

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           A + G   A           +         +  ++ +  G + G  I++    E    D+
Sbjct: 126 ADVLGGLAA----------SAAIMVSDIPFENAMSEVRVGRVNGLFIINPTIDELEGSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           D +   T    I  ++G  E    S+      +    + I  L +LQ + ++ EV
Sbjct: 176 DISIGGTAD-TICMLEG--EMKEISEAEMLDAIKFGHEAIKKLCQLQNE-LAGEV 226


>gi|319937430|ref|ZP_08011836.1| septum formation protein maf [Coprobacillus sp. 29_1]
 gi|319807447|gb|EFW04051.1| septum formation protein maf [Coprobacillus sp. 29_1]
          Length = 895

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 87/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G+T +L   T  A  E +    +     
Sbjct: 318 IRPDGRKIDEVRPLNAQIDLLPRVHGSALFTRGETQVLSVCTLGALGEHQKIDGLGLEDQ 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 378 KRFMHHYNFPPYSVGETGR----MGAPGRREIGHGALGERALAQVIPSEDEFPYTIRLVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I  + +AL                   +   V+ ++ G++       
Sbjct: 434 EVLESNGSSSQASICASSMALMTAGV-------------PISNPVSGVAMGLVKKGDDYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    +++     L  A      ++ 
Sbjct: 481 ILTDIQGMEDHLGDMDFKVAGTKKG-ICALQMDIKIEGITKEILQEALAQANVGRQQIMD 539

Query: 233 LQKDVISNE 241
                I+  
Sbjct: 540 CMLGAIAEP 548



 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 88/231 (38%), Gaps = 28/231 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69
           +++    ++K A GS LV++ DT +L+TA      + V  +     +       G +P  
Sbjct: 15  LTVEAGELAKQANGSVLVRYDDTVILSTAVAGKEPKDVDFFPLTVTYEEKLYSVGKIP-- 72

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KRE   GR         RMI R +R +         Q++     +  +     AA
Sbjct: 73  -GGFLKRE---GRPSEHGTLTARMIDRPIRPLFADGFRNEVQVVNTVLSVDQNASPEMAA 128

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS-TIDVD 188
           + GA +AL                     G +A ++ G++ G   ++    ED     ++
Sbjct: 129 MFGASLALC-------------LSDIPFNGPIAGVNVGLIDGEFTIN-AGPEDMERSLIN 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                T    I  V+  A+     ++     L    D+I +LI  Q+ V+ 
Sbjct: 175 LEVAGTKEA-INMVEADAKE--VDEETMLNALMFGHDKIKELIAFQEKVVE 222


>gi|154249089|ref|YP_001409914.1| polynucleotide phosphorylase/polyadenylase [Fervidobacterium
           nodosum Rt17-B1]
 gi|187610262|sp|A7HK24|PNP_FERNB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|154153025|gb|ABS60257.1| Polyribonucleotide nucleotidyltransferase [Fervidobacterium nodosum
           Rt17-B1]
          Length = 693

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 93/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR    +R I+    +     GS L   G+T  L   TL    EE++   +     
Sbjct: 318 LRADGRGPKDIRPITCEVGLLPRTHGSSLFTRGETQSLGIVTLGSPAEEQIIDTLIEEGT 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG        S R+ G       +  RA+++++         I +  
Sbjct: 378 KRFILHYNFPPFSTGEVKPLRGPSRREIGHGH----LAERAVKAIIPPEDEFPYVIRVVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           ++++++G +  A +  A +AL D                  K HVA ++ G++     G 
Sbjct: 434 EILESNGSSSMATVCSASLALMDAGV-------------PTKKHVAGVAMGLILEEGKGV 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I   Q   + +  S++     L  AK+    ++ 
Sbjct: 481 ILTDIIGLEDHWGDMDFKVAGTKDG-ITAFQMDCKVSGVSEELLRQALYQAKEARMFILD 539

Query: 233 LQKDVISNE 241
              + IS  
Sbjct: 540 KLYETISEP 548



 Score = 99.4 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 85/226 (37%), Gaps = 28/226 (12%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-----GNRV 74
           V+K + GS   +FGD+ +L T  + + V   +       +T E+ M          G  V
Sbjct: 20  VAKQSAGSIWARFGDSVVLATVNVSDNV---VEGIDFVPLTVEF-MEKFYAAGKIPGGFV 75

Query: 75  KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
           KRE   G+         R+I R +R +   +     Q+I+    +  +  T    IT A 
Sbjct: 76  KRE---GKPSESGILSSRLIDRPIRPLFPKNLRNEVQVIVTVLSVDPNCPTDVLGITAAS 132

Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT 194
           +AL+                    G VA +  G + G  IV     +     +D     T
Sbjct: 133 LALN-------------ISRVPFDGIVAGVQIGYVDGQFIVFPTAEQLERSKIDIVVAGT 179

Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
               I  V+G A+    +++     L  A + I  ++  Q++VI  
Sbjct: 180 KDA-ITMVEGEAKE--VTEEEMLQALMTAHEAIKQIVAFQEEVIKE 222


>gi|313608969|gb|EFR84717.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL F2-208]
          Length = 424

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ N++R +S    +     GS L   G T  L+  TL    E ++   +   ++
Sbjct: 17  IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 76

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G    R A   R+ G       +  RAL+ V+         I +  
Sbjct: 77  KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 132

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           +V++++G +  A+I G+ +A+ D                 +K  VA I+ G++       
Sbjct: 133 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 179

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S+      L  AK+    +++
Sbjct: 180 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 238


>gi|224533071|ref|ZP_03673676.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           WI91-23]
 gi|224512007|gb|EEF82403.1| polyribonucleotide nucleotidyltransferase [Borrelia burgdorferi
           WI91-23]
          Length = 722

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 93/248 (37%), Gaps = 27/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR  N++R+I     +     GS L   G+T  L       +++E++   I   K 
Sbjct: 315 IRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G    R     R+ G       +  RAL S+V         I +  
Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A +    ++L                   +KG VA I+ G++       
Sbjct: 430 EVLESNGSSSMATVCAGSMSLMSAGV-------------PVKGQVAGIAMGLISEGDKYV 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I   Q   +    ++D     L  A+     ++ 
Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKDLMRDALEQARIGRIHILS 535

Query: 233 LQKDVISN 240
           +   VISN
Sbjct: 536 IMNTVISN 543



 Score = 88.6 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 85/239 (35%), Gaps = 32/239 (13%)

Query: 5   GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59
           GR  +++           K A GS L  +G + +L T      + E +     + ++   
Sbjct: 10  GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEK 64

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
               G +P   G  +KRE   G+   +   + R+I R +R + D       Q+I      
Sbjct: 65  YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
                     +  A+ A+             F       G +AA+    L G  IV+  +
Sbjct: 119 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGKFIVNPSF 165

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E    D+D   V      I  V+G A      +D   + ++ A + I  +   QK+ +
Sbjct: 166 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VGEDILLSAIDGAHEYIKQICNAQKEFL 221


>gi|66824695|ref|XP_645702.1| hypothetical protein DDB_G0271396 [Dictyostelium discoideum AX4]
 gi|60473889|gb|EAL71828.1| hypothetical protein DDB_G0271396 [Dictyostelium discoideum AX4]
          Length = 217

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 72/226 (31%), Gaps = 24/226 (10%)

Query: 16  LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           +   V     GS  V+  +T +L T              +   +  E      S+     
Sbjct: 1   MKIGVVSQGSGSSYVEMENTKVLCTIHGPRATQK-TELFETAKLNCELKYTTFSSTTEKI 59

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
               + ++    +++  +I +++   + L       I I   V+  DG    A+IT A +
Sbjct: 60  DYVENSKE----KDLSLLISQSIIGSIRLEKYPKTAIDIYILVLNDDGNVLVASITAATM 115

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDANFV-- 192
           AL D    M D              V++ S         ++D    E++        V  
Sbjct: 116 ALADAGVEMFD-------------MVSSCSVSCTKDNRTLIDPTTLEETIPSSSTVLVAK 162

Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           M     I ++  + E       +    ++L  D    +  + K  +
Sbjct: 163 MPSLNEITQIIQTGE---LQYTNVLECVDLCIDGCDKIYSIMKQNL 205


>gi|311068192|ref|YP_003973115.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
           1942]
 gi|310868709|gb|ADP32184.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
           1942]
          Length = 705

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 88/248 (35%), Gaps = 26/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR  +Q+R +S    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 VRPDGRGVDQIRPLSSEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G            G R      +  RAL  V+         I +  
Sbjct: 375 KRFMHHYNFPQFSVGE----TGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTIRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKSGEYYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G +  +Q   +    S++     L  AK    +++ 
Sbjct: 478 VLTDIQGMEDALGDMDFKVAGTAKG-VTALQMDIKIDGLSREILEEALQQAKKGRMEILS 536

Query: 233 LQKDVISN 240
              + +  
Sbjct: 537 SMLNTLGE 544



 Score = 88.6 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 94/232 (40%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ ++++GDT +L   TA+ E K +  +     +       G +P
Sbjct: 15  RKLTVETGQLAKQANGAVMIRYGDTAVLSSATASKEPKPLDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q+I     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G +    I++    +    D+
Sbjct: 129 AAMFGSSLALC-------------VSDIPFEGPIAGVTVGRVDNQFIINPTVDQLEKSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                 T    I  V+  A+     ++     +    + I  LI  Q+++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADEVP--EETMLEAIMFGHEEIKRLIAFQEEIVA 224


>gi|255076363|ref|XP_002501856.1| predicted protein [Micromonas sp. RCC299]
 gi|226517120|gb|ACO63114.1| predicted protein [Micromonas sp. RCC299]
          Length = 232

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 80/246 (32%), Gaps = 25/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGWI 59
           R  GR   QMR I +   V   A GS  V+   T ++       +    I       G +
Sbjct: 5   REDGRSAEQMRPIFVKTGVISQAAGSAYVELDKTKVMCGVYGPRQGGPGIDKVEFDRGRL 64

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             +  +   +T            QG   +E   ++ RAL   V         + +   V+
Sbjct: 65  DVDVKLATFATSG----PRGKVAQGDAEREFSSIVHRALSGAVMTETFPKTTVDVFATVL 120

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--YPIVDL 177
           +A+G    A I  A  AL +    M D              V+A + G   G    ++D 
Sbjct: 121 EANGSELCATIAAASAALCEAGVAMRDL-------------VSACTGGGADGPNALLLDP 167

Query: 178 -DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
               E +         M   G   +V  +    T+  +     + LA    A +    ++
Sbjct: 168 ARGEEAAAEAGVTLAYMCRLGEASQVVATG---TWDGESLDDAVQLAASGCARVDAALRE 224

Query: 237 VISNEV 242
            + + V
Sbjct: 225 ALRSSV 230


>gi|169350006|ref|ZP_02866944.1| hypothetical protein CLOSPI_00746 [Clostridium spiroforme DSM 1552]
 gi|169293219|gb|EDS75352.1| hypothetical protein CLOSPI_00746 [Clostridium spiroforme DSM 1552]
          Length = 710

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 93/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +     GS L   G+T +L+ AT     E +    +     
Sbjct: 318 IRPDGRRLDEIRPLDSQIDLLPRVHGSALFTRGETQVLSVATLGAIGEHQKIDGLGLEDQ 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R      +  RAL  V+    +    I +  
Sbjct: 378 KRFMHHYNFPPYSVGEVGR----MGAPGRREIGHGALGERALAQVIPGEDVFPYTIRVVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I  + +AL                   +K  VA ++ G++       
Sbjct: 434 EVLESNGSSSQASICASSMALMAAGV-------------PIKAPVAGVAMGLVKKGDDYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     TD G I  +Q   +    +++     L  AK    +++ 
Sbjct: 481 ILTDIQGMEDHLGDMDFKVAGTDEG-ICALQMDIKIDGITKEILQEALAQAKVARREIMA 539

Query: 233 LQKDVISNE 241
               VI+  
Sbjct: 540 NMMAVINEP 548



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 87/231 (37%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPR 68
            +S+    ++K A GS LV++ DT +L+T       + V  +     +       G +P 
Sbjct: 14  NLSVEIGELAKQANGSVLVRYNDTVILSTVVAGKEPKDVDFFPLTVTYEEKLYSVGKIP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR         RMI R +R +         Q +     +  D     A
Sbjct: 73  --GGFLKRE---GRPSEHGTLTARMIDRPIRPLFADGFRNEVQSVNTVLSVDQDASPEMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA +AL                     G +A ++ G++ G  IV+    +     ++
Sbjct: 128 AMLGASLALC-------------VSDIPFNGPIAGVNVGLVDGEFIVNGTPEQLERSLIN 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                T    I  V+  A+    S++     L    ++I +LI  Q+ V+ 
Sbjct: 175 LEVAGTKDA-INMVEADAKE--VSEEVMLEALLFGHEKIKELIAFQEKVVE 222


>gi|152993469|ref|YP_001359190.1| polynucleotide phosphorylase/polyadenylase [Sulfurovum sp. NBC37-1]
 gi|187611305|sp|A6QBH4|PNP_SULNB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|151425330|dbj|BAF72833.1| polyribonucleotide nucleotidyltransferase [Sulfurovum sp. NBC37-1]
          Length = 729

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 91/243 (37%), Gaps = 22/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNT 54
           +R  GR  +++R I++   +     GSCL   G T  L TATL +K    +      +NT
Sbjct: 344 IRADGRGLDEVRPITIETNILPSVHGSCLFTRGQTQALVTATLGDKKDAQMFELITDKNT 403

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +       Y     S G      A   R+ G       +  RAL  V+ ++  G   I +
Sbjct: 404 QSENFMVHYNFPGYSVGEAKFIGAPGRRELGHG----NLAKRALEPVIPINYDG--TIRL 457

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             +V++++G +  A I G  +AL      M +      +  V  G   A+         +
Sbjct: 458 VSEVLESNGSSSMATICGGALALRAAEVDMVELVAGIAMGLVTDGERVAV---------L 508

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED   D+D     T +G I  +Q   +            L  A      ++ L 
Sbjct: 509 TDIMGLEDHDGDMDFKIAGTRNG-ITALQMDIKLGGIDLITLKVALEKAAQGKDHILDLM 567

Query: 235 KDV 237
           ++ 
Sbjct: 568 EEA 570



 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 78/233 (33%), Gaps = 31/233 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST----GNRVK 75
           ++K A G+ + + G   L+    ++EK            +T +Y     +     G  +K
Sbjct: 22  IAKQASGAVMYRQGKAVLIAAVAVDEKA----VEEDFLPLTVQYMERSYAAAKIPGGFIK 77

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE    + G       R++ R+LR +          I +               ++    
Sbjct: 78  RET---KPGDFETLTSRIVDRSLRPLFPKGFYYPVTISVMV-------------VSSDSE 121

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
                       +  +     ++  +AA+  G +    +++    +     +D   V ++
Sbjct: 122 VDMQVAALHAANAALYVSDISVQRSIAAVRVGKIEDELVLNPTLSQQDESVLDLLVVGSE 181

Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK------DVISNEV 242
              I+ ++  A  +    D    M++     +  +++ Q+      + + + +
Sbjct: 182 QD-IIMIEMRAIASEKIDDIEMDMIDPMMGGVPLILEHQECNEVDNEALVDAI 233


>gi|322435940|ref|YP_004218152.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp.
           MP5ACTX9]
 gi|321163667|gb|ADW69372.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp.
           MP5ACTX9]
          Length = 817

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 89/244 (36%), Gaps = 18/244 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTK--H 56
           +R   R  +Q+R +++   V     GS L   G+T  L +ATL   +        T    
Sbjct: 314 IRPDHRAFDQIRLVTVETGVLPRVHGSALFTRGETQALVSATLGTTDDAQRMESYTGEFK 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +   V  R+ G       +  RA+ +V+         + +  
Sbjct: 374 RRFMLHYNFPPFSVGEVGRMTGVGRREIGHG----ALAWRAIEAVLPGEDESPYTLRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           D+++++G +  A + GA +AL      ++       +  V +G   AI         + D
Sbjct: 430 DILESNGSSSMATVCGASLALMAAGIPLKGAVAGVAMGLVKEGDKYAI---------LTD 480

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I  +Q   +    +       L  A+    +L+     
Sbjct: 481 IAGAEDHYGDMDFKVAGTRKG-ITALQMDIKIMGITPQIMREALEQARRGRLELLDTMDA 539

Query: 237 VISN 240
            IS+
Sbjct: 540 TISS 543



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 82/231 (35%), Gaps = 27/231 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           I        K A G+     GD  +L TA      +E +  +    ++   T   G +P 
Sbjct: 15  IKFETGRMAKQASGAAFTTSGDNAILATAVASPDPKEGIDFFPLTVEYREFTYAGGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR   +     R I R +R +   +     Q++        +      
Sbjct: 74  --GGFIKRE---GRPSEKEILTSRQIDRPIRPLFPEAFRNETQVVAFVYSADKENDPDVL 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            I GA  AL                     G V A+  G++ G  IV+  Y E    +++
Sbjct: 129 GINGASCALA-------------LSDIPFHGPVGAVRVGLIEGNFIVNPTYAEREKSELN 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
              V T  G IV V+  ++    S++   + +  A   I  +    ++++ 
Sbjct: 176 IMVVGTADG-IVMVESGSKET--SEESVVSAIEFAHVEIKKICAAIEELVK 223


>gi|238019453|ref|ZP_04599879.1| hypothetical protein VEIDISOL_01322 [Veillonella dispar ATCC 17748]
 gi|237864152|gb|EEP65442.1| hypothetical protein VEIDISOL_01322 [Veillonella dispar ATCC 17748]
          Length = 689

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 94/250 (37%), Gaps = 28/250 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRN----TK 55
           +R  GR+ +++R IS    V     GS L   G T +L  AT+        I      T+
Sbjct: 309 IRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSETQTIDGIGLETE 368

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I   Y     S G          R+ G       +  RAL  V+         + + 
Sbjct: 369 KRYIH-HYNFPSFSVGETRSSRGPGRREIGHG----ALAERALVPVIPSEEEFPYALRLV 423

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V++++G +  A++ G+ ++L D                 +K  VA I+ G++      
Sbjct: 424 SEVLESNGSSSMASVCGSTLSLMDAGV-------------PIKAPVAGIAMGLVTQGEHY 470

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED+  D+D     T  G +  +Q   + +  S++     L  A      ++
Sbjct: 471 TILTDIQGMEDALGDMDFKVAGTAKG-VTAIQMDIKISGLSREILHEALEQAHKGRMHIM 529

Query: 232 KLQKDVISNE 241
            +  D I+  
Sbjct: 530 GIMLDTIAEP 539



 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 89/231 (38%), Gaps = 28/231 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ +V +GDT +L TAT  ++   +  +     +       G LP
Sbjct: 11  RTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVDYEEKMYAVGRLP 70

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KREA   R    +    R+I R +R + D        ++     +  D     
Sbjct: 71  ---GGFIKREA---RPPESAILNSRLIDRPIRPLFDKGVRNEVHVVATVMSVDQDCDPAI 124

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
             + GA  AL                     G +A +  G + G  IV+    E      
Sbjct: 125 CGMIGASAALS-------------ISDIPWNGPIAGVRMGRINGEFIVNPTK-EQLEA-T 169

Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           D N V+      I+ V+G A+     ++    ++  A + I  ++  Q+D+
Sbjct: 170 DLNIVVAGTKDAILMVEGGAQEVP--EETILEVIMAAHEEIKKIVAFQEDM 218


>gi|328793187|ref|XP_623498.2| PREDICTED: exosome complex exonuclease MTR3-like isoform 1 [Apis
           mellifera]
          Length = 270

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 70/187 (37%), Gaps = 21/187 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R  N+MR+I L   +   A+GS  ++ G+T ++ +     ++         G I 
Sbjct: 36  IRNDKRSNNEMRKIFLKTGIVSQAKGSAYIELGNTKVVCSVFDPRELSNRNGYCSQGEIY 95

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            E+   P S   R   +     Q    ++   ++ RAL          + Q+ +   V+ 
Sbjct: 96  CEFKFAPFSCQKRKIHQ-----QDAEEKQYSLILQRALEPA---HEFPNFQVDVYAMVLD 147

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
             G +  AAI  A  AL +    M              G V A + G+   + ++D    
Sbjct: 148 NAGSSLAAAIMAASTALANAGVPMF-------------GLVTASTIGIYDNHYLMDPTDT 194

Query: 181 EDSTIDV 187
           E+   + 
Sbjct: 195 EEVICNT 201


>gi|16800436|ref|NP_470704.1| polynucleotide phosphorylase/polyadenylase [Listeria innocua
           Clip11262]
 gi|81526977|sp|Q92C23|PNP_LISIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|16413841|emb|CAC96599.1| polynucleotide phosphorylase (PNPase) [Listeria innocua Clip11262]
          Length = 723

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 95/249 (38%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ N++R +S    +     GS L   G T  L+  TL    E ++   +   ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G    R A   R+ G       +  RAL+ V+         I +  
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           +V++++G +  A+I G+ +A+ D                 +K  VA I+ G++       
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S+      L  AK+    +++
Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 537

Query: 233 LQKDVISNE 241
                IS  
Sbjct: 538 HLTSTISEP 546



 Score = 95.2 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 26/230 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69
           +S+    ++K A G+ L+++GDT +LT A           +     +       G +P  
Sbjct: 16  LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KRE   GR   R+    R+I R +R +         QI      +  D     AA
Sbjct: 74  -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ VAL                    +G +A +  G + G  +++    +    D+  
Sbjct: 130 MLGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
               T    I  V+  A+    S++     +    + I  L + Q+ +I+
Sbjct: 177 TVAGTYDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223


>gi|148361082|ref|YP_001252289.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
           str. Corby]
 gi|296108412|ref|YP_003620113.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
           2300/99 Alcoy]
 gi|187610281|sp|A5IHU3|PNP_LEGPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148282855|gb|ABQ56943.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
           str. Corby]
 gi|295650314|gb|ADG26161.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
           2300/99 Alcoy]
          Length = 729

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 93/244 (38%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R IS+  +  +   GSCL   G+T  +  ATL  +        I      
Sbjct: 314 RIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQILDGISGESRD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      R+  RAL +V+  +      + I  +
Sbjct: 374 RFMLHYNFPPYSVGETGQVGSPKRREIGHG----RLAKRALMAVLPDANEFPYVLRIVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    ++       +  + +G   A+         + D+
Sbjct: 430 ITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAV---------LTDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   + +  + +     L  A +    ++ +  + 
Sbjct: 481 LGDEDHLGDMDFKVAGTEKG-ITALQMDIKISGITNEIMEQALEQALEGRTHILGVMNNA 539

Query: 238 ISNE 241
           ++  
Sbjct: 540 LAEH 543



 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 77/231 (33%), Gaps = 31/231 (13%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRST 70
           L    V++ A+G+ +     T +L T        E    +     +       G +P   
Sbjct: 17  LETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNYQEKFYAIGKIP--- 73

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR       I R+I R +R +   +     QII     +  +      A+
Sbjct: 74  GGFNKRE---GRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVSPDIIAM 130

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  AL                     G + A   G   G  +++    E     +D  
Sbjct: 131 IGASAALS-------------ISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLV 177

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237
              T    I+ V+  +E    S+D     +     + K+ I  + +L ++V
Sbjct: 178 IAGTKDA-ILMVE--SEAQELSEDIMRGAMLYGHEMMKNVIKSIEELAREV 225


>gi|146308619|ref|YP_001189084.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina
           ymp]
 gi|145576820|gb|ABP86352.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas mendocina
           ymp]
          Length = 725

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 92/243 (37%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R + +   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 340 RIDGRDTRTVRPLKIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 399

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R + +++         I +  +
Sbjct: 400 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRGVAAMLPKDDEFPYTIRVVSE 455

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    M+       +  VL+G   A+         + D+
Sbjct: 456 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGEKFAV---------LTDI 506

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  A +   +++     V
Sbjct: 507 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKIQGITEEIMEQALEQALEARLNILGQMNQV 565

Query: 238 ISN 240
           IS 
Sbjct: 566 ISQ 568



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 76/231 (32%), Gaps = 31/231 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGD--THLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66
           ++L    +++ A G+ LV   +  T +L T    +        +  +  +   T   G +
Sbjct: 38  VTLETGRIARQASGAVLVTVDNDVT-VLVTVVGAKTADPSKGFFPLSVHYQEKTYAAGKI 96

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +     R+I R +R +     +   Q++             
Sbjct: 97  P---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPD 150

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185
            A++ G   AL                     G + A           +++ +Y +    
Sbjct: 151 IASMIGTSAALAVSGI-------------PFNGPIGAARVAFHPDTGYLLNPNYEQLKAS 197

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            +D     T++  ++     +E    ++D     +  A      +I+  K+
Sbjct: 198 SLDMVVAGTETAVLMV---ESEADELTEDQMLGAVLFAHQEFQAVIQAVKE 245


>gi|121604326|ref|YP_981655.1| polynucleotide phosphorylase/polyadenylase [Polaromonas
           naphthalenivorans CJ2]
 gi|187610307|sp|A1VM56|PNP_POLNA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|120593295|gb|ABM36734.1| 3' exoribonuclease [Polaromonas naphthalenivorans CJ2]
          Length = 703

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 92/247 (37%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTK--HG 57
           R+ GR    +R I +   V     GS L   G+T  L   TL  E         +     
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVTTLGTERDAQRIDALSGDYED 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL +V+         + +  +
Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIAVLPSKEEFPYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G  ++L D    M             K HVA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLIKEDNRFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +  I  +Q   +    +++     L  AK+    ++  
Sbjct: 480 LTDILGDEDHLGDMDFKVAGT-TFGITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538

Query: 234 QKDVISN 240
            ++ +  
Sbjct: 539 MQEAMGQ 545



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 77/234 (32%), Gaps = 31/234 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
           ++++    +++ A G+ L+    T +L T   +         +     +   T   G +P
Sbjct: 17  KVTMETGEMARQAGGAVLLDMDGTVVLATVVAKSDAKPGQDFFPLTVDYLEKTYAAGRIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G+  KRE   GR         R+I R +R +         Q++I    +  +     
Sbjct: 77  ---GSFFKRE---GRPSEFETLTSRLIDRPIRPLFPEGFFNEVQVVIHVLSLNPEVEGDI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+  +  AL                     G + A     + G  +++    +     +
Sbjct: 131 PALIASSAALSISGI-------------PFNGPIGAARVAYINGEYVLNPGKTQLQNSTM 177

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
           D     T++  ++     +E    S++     +    +     I  + +L +D 
Sbjct: 178 DLVVAGTEAAVLMV---ESEAKQLSEEIMLGAIVFGHEQGNIAINAIHELVRDA 228


>gi|227824763|ref|ZP_03989595.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus sp. D21]
 gi|226905262|gb|EEH91180.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus sp. D21]
          Length = 703

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 84/235 (35%), Gaps = 28/235 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTATLEEKVPMWIRNTK---- 55
           +R  GR  +++R IS    +     G  L   G T +L   A    +    +        
Sbjct: 321 IRPDGRALDEVRPISCEVGLLARPHGCSLFTRGQTQVLNCLALAPLREAQTLDGLGTELT 380

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I   Y   P S G      +   R+ G       +  RAL  V+         I + 
Sbjct: 381 KRYIH-HYNFPPYSVGETKPLRSPGRREIGHG----ALAERALLPVIPSEEEFPYTIRLV 435

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V++++G +  A+   + ++L D                 +K  V+ ++ G++      
Sbjct: 436 SEVLESNGSSSMASTCASTLSLMDAGV-------------PIKAPVSGVAMGLVKEGDDI 482

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             + D+   ED+  D+D     T+ G I  +Q   +    ++  F   L  A+  
Sbjct: 483 TILTDIQGLEDANGDMDFKVAGTEKG-ITAIQMDIKIDGINRQIFEQALEQARKG 536



 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 27/230 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R +++    ++K A GS L+++G+T ++   T      E V  +             G +
Sbjct: 22  RPLTIETGKIAKQANGSVLIRYGETAVVVAVTGTDTPREGVDFFPLTVDFEEKMYAVGKI 81

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  ++RE   GR    +    R+I R +R +         QI+     +  D    
Sbjct: 82  P---GGFLRRE---GRPPETAILTSRLIDRPIRPMFPDGYHNDVQIVATAVSVDPDNAPD 135

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                    +G +A +  G + G  I++     +    
Sbjct: 136 IPAMIGASCALS-------------ISDIPFEGPIAGVRVGRVDGKFIINPTL--EQAAV 180

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            + N  +  +   + +  +  +    Q    A+L    + I  L+  Q+ 
Sbjct: 181 SEMNVAVAGTKEAILMVEAGAKEVSEQVMLDAIL-FGHEEIKKLVAFQEQ 229


>gi|52842967|ref|YP_096766.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|81376653|sp|Q5ZRV8|PNP_LEGPH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|52630078|gb|AAU28819.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 729

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 93/244 (38%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R IS+  +  +   GSCL   G+T  +  ATL  +        I      
Sbjct: 314 RIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQILDGISGESRD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      R+  RAL +V+  +      + I  +
Sbjct: 374 RFMLHYNFPPYSVGETGQVGSPKRREIGHG----RLAKRALMAVLPDANEFPYVLRIVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    ++       +  + +G   A+         + D+
Sbjct: 430 ITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAV---------LTDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   + +  + +     L  A +    ++ +  + 
Sbjct: 481 LGDEDHLGDMDFKVAGTEKG-ITALQMDIKISGITNEIMEQALEQALEGRTHILGVMNNA 539

Query: 238 ISNE 241
           ++  
Sbjct: 540 LAEH 543



 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 77/231 (33%), Gaps = 31/231 (13%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRST 70
           L    V++ A+G+ +     T +L T        E    +     +       G +P   
Sbjct: 17  LETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNYQEKFYAIGKIP--- 73

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR       I R+I R +R +   +     QII     +  +      A+
Sbjct: 74  GGFNKRE---GRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVSPDIIAM 130

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  AL                     G + A   G   G  +++    E     +D  
Sbjct: 131 IGASAALS-------------ISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLV 177

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237
              T    I+ V+  +E    S+D     +     + K+ I  + +L +DV
Sbjct: 178 IAGTKDA-ILMVE--SEAQELSEDIMRGAMLYGHEMMKNVIKSIEELARDV 225


>gi|21674467|ref|NP_662532.1| polynucleotide phosphorylase/polyadenylase [Chlorobium tepidum TLS]
 gi|81790880|sp|Q8KBY3|PNP_CHLTE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|21647655|gb|AAM72874.1| polyribonucleotide nucleotidyltransferase [Chlorobium tepidum TLS]
          Length = 733

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 88/241 (36%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           RL GR   Q+R IS+   +   A GS L   G+T  L T TL  K        + + K  
Sbjct: 332 RLDGRTLEQVRPISIELGLIPRAHGSALFTRGETQALVTLTLGTKKDAQSVDTLTDDKDK 391

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G       +  RA++ V+         + +  D
Sbjct: 392 RFMLHYNFPPFSVGEIGRVGGAGRREIGHG----NLAERAIKMVMPSEQEFPYTVRLVSD 447

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +++++G +  A++ G  +A  D    ++   +   +  + +G   A+         + D+
Sbjct: 448 ILESNGSSSMASVCGGTLAAMDGGIPLKKPVSGIAMGLIKEGDRYAV---------LSDI 498

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I   Q   +            L  A+     ++ +  + 
Sbjct: 499 LGNEDHLGDMDFKVAGTRDG-ITACQMDIKIDGLDYHILETALEQARKGRLHILDVMAEA 557

Query: 238 I 238
           I
Sbjct: 558 I 558



 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 84/232 (36%), Gaps = 23/232 (9%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTA--TLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           I++      K A+GS +V   DT +L T   +     P             +Y    +  
Sbjct: 15  ITIETGKMAKQADGSAVVTMNDTMVLATVVSSKTPPSPNQDFFPLQVEYREKYSAAGKFP 74

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR   +     R+I RALR +         QIII   VI +D     A +
Sbjct: 75  GGFFKRE---GRPSEKEILSARLIDRALRPLFPDGYYQETQIIIS--VISSD-TINDADV 128

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            G   A           +            ++ +  G + G  IV+ D  E +  D+D  
Sbjct: 129 LGGIAA----------SAAIMVSDIPFANPMSEVRVGRINGLFIVNPDINELAQSDMDIC 178

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
              T+   I  ++G  E    S+      +    D I  +  LQ++ ++ EV
Sbjct: 179 IGGTED-TICMLEG--EMKEISEAEMLDAIKFGHDAIKKICALQRE-LAAEV 226


>gi|315282187|ref|ZP_07870650.1| polyribonucleotide nucleotidyltransferase [Listeria marthii FSL
           S4-120]
 gi|313614173|gb|EFR87854.1| polyribonucleotide nucleotidyltransferase [Listeria marthii FSL
           S4-120]
          Length = 723

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ N++R +S    +     GS L   G T  L+  TL    E ++   +   ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G    R A   R+ G       +  RAL+ V+         I +  
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           +V++++G +  A+I G+ +A+ D                 +K  VA I+ G++       
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S+      L  AK+    +++
Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 537



 Score = 95.5 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 26/230 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69
           +S+    ++K A G+ L+++GDT +LT A           +     +       G +P  
Sbjct: 16  LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KRE   GR   R+    R+I R +R +         QI      +  D     AA
Sbjct: 74  -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ VAL                    +G +A +  G + G  +++    +    D+  
Sbjct: 130 MLGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
               T    I  V+  A+    S++     +    + I  L + Q+ +I+
Sbjct: 177 TVAGTYDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223


>gi|32266093|ref|NP_860125.1| polynucleotide phosphorylase/polyadenylase [Helicobacter hepaticus
           ATCC 51449]
 gi|81666186|sp|Q7VIL0|PNP_HELHP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|32262142|gb|AAP77191.1| polyribonucleotide nucleotidyltransferase [Helicobacter hepaticus
           ATCC 51449]
          Length = 709

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 89/243 (36%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW------IRNT 54
           +R  GR    +R IS+   +  +A GS L   G T  L +AT+              +N 
Sbjct: 320 IRADGRGLKDVRPISIQTNILPFAHGSVLFTRGQTQALVSATIGGDNDAQNYEMLGSKNA 379

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y     S G      +V  R+ G       +  RAL S V       + I +
Sbjct: 380 LKKRFLFHYNFPSFSVGEASMIGSVGRRELGHG----NLAKRALHSSVQEQ---DKTIRL 432

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++++++G +  A++ G  +AL  C   +E       +  V +    AI         +
Sbjct: 433 VSEILESNGSSSMASVCGGSLALCACGIKVESLIAGVAMGLVTQDEQCAI---------L 483

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED   D+D        G I  +Q   +    +Q+     L  AK+    ++ + 
Sbjct: 484 TDISGLEDHDGDMDFKVAGGYKG-ISAMQMDIKLGGITQEILCQALFQAKEAREQILAIM 542

Query: 235 KDV 237
           ++ 
Sbjct: 543 EEA 545



 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 79/222 (35%), Gaps = 33/222 (14%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTA-------TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           V++ A G  L + G + LL +          +E +P+ ++  +       Y      +G 
Sbjct: 20  VAQAANGGILYQNGGSVLLASVCTQENEKYDDEFLPLSVQYIEK-----TYANNKFPSG- 73

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   G+         R+I R LR +          I++   V+  DG         
Sbjct: 74  FIKRE---GKPSEFEILTSRLIDRTLRPLFPKGYTYITSIVV--MVLSYDG-------KS 121

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN-F 191
                           +   L  +    V+ +  G   G+ I++     +   + + N F
Sbjct: 122 DLQLNALNAAACALYVSDLPLESLQDKAVSGVRIGRKDGHFIINPTM--EQLSESELNLF 179

Query: 192 VMTDSGHIVEVQG----SAERA-TFSQDHFFAMLNLAKDRIA 228
           V      ++ ++     +A+ A   S+++F   L  AK+ I 
Sbjct: 180 VSGRDDELLMIEMKSIRTAQGANELSEENFLEALECAKNYIK 221


>gi|16803371|ref|NP_464856.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           EGD-e]
 gi|47095916|ref|ZP_00233519.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           str. 1/2a F6854]
 gi|224501726|ref|ZP_03670033.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           FSL R2-561]
 gi|254827592|ref|ZP_05232279.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL N3-165]
 gi|254898504|ref|ZP_05258428.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           J0161]
 gi|254912005|ref|ZP_05262017.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           J2818]
 gi|254936332|ref|ZP_05268029.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           F6900]
 gi|284801716|ref|YP_003413581.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           08-5578]
 gi|284994858|ref|YP_003416626.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           08-5923]
 gi|81509180|sp|Q8Y7F1|PNP_LISMO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|16410747|emb|CAC99409.1| polynucleotide phosphorylase (PNPase) [Listeria monocytogenes
           EGD-e]
 gi|47015662|gb|EAL06592.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           str. 1/2a F6854]
 gi|258599969|gb|EEW13294.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL N3-165]
 gi|258608922|gb|EEW21530.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           F6900]
 gi|284057278|gb|ADB68219.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           08-5578]
 gi|284060325|gb|ADB71264.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           08-5923]
 gi|293589970|gb|EFF98304.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           J2818]
          Length = 723

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ N++R +S    +     GS L   G T  L+  TL    E ++   +   ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G    R A   R+ G       +  RAL+ V+         I +  
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           +V++++G +  A+I G+ +A+ D                 +K  VA I+ G++       
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S+      L  AK+    +++
Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 537



 Score = 95.5 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 26/230 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69
           +S+    ++K A G+ L+++GDT +LT A           +     +       G +P  
Sbjct: 16  LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KRE   GR   R+    R+I R +R +         QI      +  D     AA
Sbjct: 74  -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ VAL                    +G +A +  G + G  +++    +    D+  
Sbjct: 130 MLGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
               T    I  V+  A+    S++     +    + I  L + Q+ +I+
Sbjct: 177 TVAGTYDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223


>gi|307293331|ref|ZP_07573177.1| polyribonucleotide nucleotidyltransferase [Sphingobium
           chlorophenolicum L-1]
 gi|306881397|gb|EFN12613.1| polyribonucleotide nucleotidyltransferase [Sphingobium
           chlorophenolicum L-1]
          Length = 781

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 96/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR   Q+R I           GS L   G+T  + T TL  K    + +  +G    
Sbjct: 316 RIDGRTTTQIRPIEAIVGFLPRTHGSALFTRGETQSICTTTLGTKDAEQMIDGLNGVYYE 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G      ++  RAL  V+         I +  D
Sbjct: 376 NFMLHYNFPPYSVGEVGRFGAPGRREVGHG----KLAWRALHPVLPSKDEFPYTIRVLSD 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +++ D    ++   +   +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKNFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   + A  +Q+ F   L  AK+  A ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTEAG-ITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMSKA 541

Query: 238 ISN 240
           +S+
Sbjct: 542 LSS 544



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 76/225 (33%), Gaps = 27/225 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           ++L    +++ A+ + L  +G+T +L   T  + V           +T  Y     S   
Sbjct: 16  LTLETGRIARQADAAVLATYGETVVLCAVTAAKSV---KEGQDFFPLTVHYQ-EKYSAAG 71

Query: 73  RVKREAVSGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTA 128
           R+        +G   +E  + R+I R +R +          I +   V+  DG       
Sbjct: 72  RIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNE--INVIAQVLSFDGESEPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+  A  AL                     G + A   G   G   ++    E  T ++D
Sbjct: 130 AMIAASAAL-------------TLSGVPFLGPIGAARVGYKDGEYQLNPSLDEVKTGELD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
                T S  ++ V+  +E    S+D     +  A +    ++  
Sbjct: 177 LVVAATGSA-VMMVE--SEAKELSEDVMLGAVLFAHEASKKIVNA 218


>gi|193212209|ref|YP_001998162.1| polynucleotide phosphorylase/polyadenylase [Chlorobaculum parvum
           NCIB 8327]
 gi|226702632|sp|B3QM09|PNP_CHLP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|193085686|gb|ACF10962.1| Polyribonucleotide nucleotidyltransferase [Chlorobaculum parvum
           NCIB 8327]
          Length = 732

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 88/241 (36%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           RL GR   Q+R IS+   +   A GS L   G+T  L T TL  K        + + K  
Sbjct: 331 RLDGRTLEQVRPISIELGLIPRAHGSALFTRGETQALVTLTLGTKKDAQSVDTLTDDKDK 390

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G       +  RA++ V+         + +  D
Sbjct: 391 RFMLHYNFPPFSVGETGRVGGTGRREIGHG----NLAERAIKMVMPAEQEFPYTVRLVSD 446

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +++++G +  A++ G  +A  D    ++   +   +  + +G   A+         + D+
Sbjct: 447 ILESNGSSSMASVCGGTLAAMDGGIPLKKPVSGIAMGLIKEGDRYAV---------LSDI 497

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I   Q   +            L  A+     ++ +  + 
Sbjct: 498 LGNEDHLGDMDFKVSGTRDG-ITACQMDIKIDGLDYHILETALEQARKGRLHILDVMTEA 556

Query: 238 I 238
           I
Sbjct: 557 I 557



 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 83/232 (35%), Gaps = 23/232 (9%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTA--TLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           I++      K A+GS +V+  DT +L T   +     P             +Y    +  
Sbjct: 15  ITIETGKMAKQADGSAVVRLNDTMVLATVVSSKTPPPPSQDFFPLQVEYREKYSAAGKFP 74

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR   +     R+I RALR +         QIII   VI +D     A +
Sbjct: 75  GGFFKRE---GRPSEKEILSARLIDRALRPLFPDGYYQETQIIIS--VISSD-TINDADV 128

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            G   A           +            ++ +  G + G  IV+ D  E    D+D  
Sbjct: 129 LGGIAA----------SAAIMVSDIPFANPMSEVRVGRINGQFIVNPDTEELQRSDLDIC 178

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
              T+   I  ++G  E    S+      +    + I  L   QK+ ++ EV
Sbjct: 179 IGGTED-TICMLEG--EMKEISEAEMLDAIKFGHEAIKKLCAFQKE-LAAEV 226


>gi|187611322|sp|A4XYD6|PNP_PSEMY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 702

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 92/243 (37%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R + +   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 317 RIDGRDTRTVRPLKIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R + +++         I +  +
Sbjct: 377 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRGVAAMLPKDDEFPYTIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    M+       +  VL+G   A+         + D+
Sbjct: 433 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGEKFAV---------LTDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  A +   +++     V
Sbjct: 484 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKIQGITEEIMEQALEQALEARLNILGQMNQV 542

Query: 238 ISN 240
           IS 
Sbjct: 543 ISQ 545



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 76/231 (32%), Gaps = 31/231 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGD--THLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66
           ++L    +++ A G+ LV   +  T +L T    +        +  +  +   T   G +
Sbjct: 15  VTLETGRIARQASGAVLVTVDNDVT-VLVTVVGAKTADPSKGFFPLSVHYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +     R+I R +R +     +   Q++             
Sbjct: 74  P---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185
            A++ G   AL                     G + A           +++ +Y +    
Sbjct: 128 IASMIGTSAALAVSGI-------------PFNGPIGAARVAFHPDTGYLLNPNYEQLKAS 174

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            +D     T++  ++     +E    ++D     +  A      +I+  K+
Sbjct: 175 SLDMVVAGTETAVLMV---ESEADELTEDQMLGAVLFAHQEFQAVIQAVKE 222


>gi|328468614|gb|EGF39614.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           1816]
          Length = 728

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ N++R +S    +     GS L   G T  L+  TL    E ++   +   ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G    R A   R+ G       +  RAL+ V+         I +  
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           +V++++G +  A+I G+ +A+ D                 +K  VA I+ G++       
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S+      L  AK+    +++
Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 537



 Score = 95.5 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 26/230 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69
           +S+    ++K A G+ L+++GDT +LT A           +     +       G +P  
Sbjct: 16  LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KRE   GR   R+    R+I R +R +         QI      +  D     AA
Sbjct: 74  -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ VAL                    +G +A +  G + G  +++    +    D+  
Sbjct: 130 MLGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
               T    I  V+  A+    S++     +    + I  L + Q+ +I+
Sbjct: 177 TVAGTYDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223


>gi|323341663|ref|ZP_08081896.1| polyribonucleotide nucleotidyltransferase [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464088|gb|EFY09281.1| polyribonucleotide nucleotidyltransferase [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 712

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 90/245 (36%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           +R  GR  +++R +++   +     GS L   G+T +L+  TL           + +   
Sbjct: 318 IRPDGRGVDEVRPLNVQIDLLSRVHGSGLFTRGETQVLSVCTLGAMADTQIIDDLSDVDS 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 378 KRFLHHYNFPPYSVGETGR----MGAPGRREIGHGALGERALSYVIPSEEEFPYTIRLVA 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G +  A+I    +AL      ++   +   +  V  G    I         + D
Sbjct: 434 EVLESNGSSSQASICAGSLALMAAGVPVKAAVSGIAMGLVQYGDDYTI---------LTD 484

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I  +Q   +    S+D     L  AK   A+++    +
Sbjct: 485 IQGMEDHFGDMDFKVAGTKKG-ITALQMDIKIKGLSEDILREALAQAKTGRAEMMAAMDE 543

Query: 237 VISNE 241
           VIS  
Sbjct: 544 VISEP 548



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 85/235 (36%), Gaps = 29/235 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
            + +    ++K A GS LV++ DT +L+ AT         ++     +T  Y     S G
Sbjct: 14  NLKVETGELAKQAGGSVLVRYEDTVVLSAAT----ASKKAKDIDFFPLTVTYEEKLYSVG 69

Query: 72  ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
                 ++RE   GR    +    R+I R +R +         Q++     +  D     
Sbjct: 70  KIPGGFLRRE---GRPSEHATLTSRLIDRTIRPLFAEGFRNEVQVVNTVLSVDQDSAPDM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ GA ++L                    +G +A ++ G +    +++    E     +
Sbjct: 127 AAMFGASLSL-------------MVSDIPFEGPIAGVTVGYIDETFVINPTLEEQEKSKM 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                 T    I  V+  AE    S++     +    + I  L   Q + I+ EV
Sbjct: 174 HLIVAGTKDA-INMVEAGAEE--VSEELMLEAMLFGHEWIKRLCAFQIE-IAQEV 224


>gi|297566425|ref|YP_003685397.1| polyribonucleotide nucleotidyltransferase [Meiothermus silvanus DSM
           9946]
 gi|296850874|gb|ADH63889.1| polyribonucleotide nucleotidyltransferase [Meiothermus silvanus DSM
           9946]
          Length = 718

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 92/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           R  GR   Q+R I +   V   A GS +   G+T +L   TL       + +        
Sbjct: 329 RADGRTNTQVRPIWIEADVLPRAHGSAVFARGETQVLGVVTLGTGRDAQLVDDLGLDTED 388

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +   VS R+ G       +  RALR+V+         I +  D
Sbjct: 389 PFLVHYNFPPYSTGEVKRLRGVSRREVGHG----NLAKRALRAVLPSQEEFPYTIRVVGD 444

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           V++++G +  A      +AL D                 +K  VA ++ G++        
Sbjct: 445 VLESNGSSSMATTCAGCLALMDAGV-------------PIKKPVAGVAMGLVSEGDRHVV 491

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED+  D+D     T  G +  +Q   + +  S +     L  A++    ++  
Sbjct: 492 LTDILGLEDALGDMDFKVTGTKDG-VTALQMDIKISGLSSETLRQALMQAREARLFILDK 550

Query: 234 QKDVISNE 241
             +V+   
Sbjct: 551 MTEVLPEP 558



 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 84/231 (36%), Gaps = 30/231 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R +S+     +K   GS  V++GDT ++ TA   +K            +T E+     + 
Sbjct: 21  RTLSIETGKYAKQVSGSVWVRYGDTVVMATAQASDK----PIEADFLPLTVEFEERHYAV 76

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G    + ++RE   GR G ++    R+  R +R +         Q+I+       +    
Sbjct: 77  GKIPGSFMRRE---GRPGEKAILSARLTDRPIRPLFPKGFRHEVQVILTVLSADQENTPD 133

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                 A  AL                     G +A++  G+  G  +++    E+S +D
Sbjct: 134 ILGPIAASAAL-------------TLSDIPWNGPIASVRVGLQDGRLVLNPVAAEESDLD 180

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
                V      I+ V+  A      ++     L  A   +  +I+LQ+ +
Sbjct: 181 ---LVVAGSKDAIIMVEAGAREIP--EEQLVQALEFAHRAMQPIIELQEQM 226


>gi|254829912|ref|ZP_05234567.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           10403S]
          Length = 723

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ N++R +S    +     GS L   G T  L+  TL    E ++   +   ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G    R A   R+ G       +  RAL+ V+         I +  
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           +V++++G +  A+I G+ +A+ D                 +K  VA I+ G++       
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S+      L  AK+    +++
Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 537



 Score = 95.5 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 26/230 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69
           +S+    ++K A G+ L+++GDT +LT A           +     +       G +P  
Sbjct: 16  LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KRE   GR   R+    R+I R +R +         QI      +  D     AA
Sbjct: 74  -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ VAL                    +G +A +  G + G  +++    +    D+  
Sbjct: 130 MLGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
               T    I  V+  A+    S++     +    + I  L + Q+ +I+
Sbjct: 177 TVAGTYDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223


>gi|323464611|gb|ADX76764.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           pseudintermedius ED99]
          Length = 697

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 95/249 (38%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +   A GS L   G T  L+  TL    E ++   +   +H
Sbjct: 318 IRPDGRKPDEIRPLSSEVGLLPRAHGSGLFTRGQTQALSVLTLGSISEYQIIDGLGEEEH 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RAL+ ++         + I  
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALKYIIPDEKTFPYTVRIVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G +  A+I G+ +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREESYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G I  +Q   +    +++     L  A+     +++
Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTTEG-ITAIQMDIKIDGLTKEVIEEALEQARKGRLAILE 539

Query: 233 LQKDVISNE 241
                I   
Sbjct: 540 HMMQTIDQP 548



 Score = 91.7 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 93/234 (39%), Gaps = 32/234 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPR 68
            +++    ++K A G+ LV++GDT +L+TAT          +     +       G +P 
Sbjct: 16  PLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG--TR 126
             G   KRE   GR G  +    R+I R +R +         QII    V+ AD      
Sbjct: 75  --GGFKKRE---GRPGDEATLTARLIDRPIRPLFPDGYRHDVQIINT--VLSADPNCSPE 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ G+ +AL                    +G +A ++ G + G  +++ +  +     
Sbjct: 128 MAAMIGSSMALS-------------VSDIPFQGPIAGVNVGYVDGEYVINPNLEQREKSR 174

Query: 187 VDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +D       D+ ++VE    A  +  ++      +    + I  L   Q+++I+
Sbjct: 175 LDLEVAGHKDAVNMVE----AGASEITEAEMLEAILFGHEEIKRLCAFQEEIIA 224


>gi|320160467|ref|YP_004173691.1| polyribonucleotide nucleotidyltransferase [Anaerolinea thermophila
           UNI-1]
 gi|319994320|dbj|BAJ63091.1| polyribonucleotide nucleotidyltransferase [Anaerolinea thermophila
           UNI-1]
          Length = 760

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 93/248 (37%), Gaps = 30/248 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R   R   ++R I     +S  A GS L   G+T +LT ATL    P   +        
Sbjct: 315 IRPDHRTPTEIRPIWCEVGISPRAHGSGLFTRGETQVLTLATL--GTPREAQELDSLVPI 372

Query: 59  ----ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y   P STG        S R+ G       +  RAL  V+         + +
Sbjct: 373 ETKRYMHHYNFPPYSTGEVKPLRGQSRREIGHG----ALAERALEPVIPPEDEFPYTLRL 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----C 170
             +V+ ++G T  A++ G+ +AL D                 +K  VA ++ G++     
Sbjct: 429 VSEVLSSNGSTSMASVCGSTLALMDTGV-------------PIKAPVAGVAMGLIKEGDN 475

Query: 171 GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T+ G I  +Q   +    + +     L  A++   D+
Sbjct: 476 AVILTDIQGLEDHLGDMDFKVAGTEKG-ITALQMDIKIKGITPELMSRALAQAREARLDI 534

Query: 231 IKLQKDVI 238
           +K    VI
Sbjct: 535 LKKMLAVI 542



 Score = 75.5 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 75/227 (33%), Gaps = 27/227 (11%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
            +          A G+  V+ GD+ +   AT      E +  +  + ++       G +P
Sbjct: 16  PVVFETGKLAGQAGGAVTVRLGDSMVFAAATMSPEPREGIDFFPLSVEYEERLYAGGRIP 75

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G+  +RE   G+    +    R+  R LR + +       Q+I+       +     
Sbjct: 76  ---GSYFRRE---GKPSTEAILTARLTDRPLRPLFNKEMRNEVQVILFSLSADQENPLDI 129

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
             I  A  AL                     G V A+  G + G  I++  + +    D+
Sbjct: 130 LCINAASAAL-------------MISDIPWGGPVGAVRIGRIDGQFIINPTFSQMEISDL 176

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D     T    I+ V+  A+     +D     L    + +  LI  Q
Sbjct: 177 DLRIAGTRDA-ILMVECGAKEVA--EDVMVQALQFGHEALQPLIDAQ 220


>gi|326335448|ref|ZP_08201635.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325692214|gb|EGD34166.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 725

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 80/230 (34%), Gaps = 20/230 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +RL GR   Q+R I           GS +   G+T  L T TL    E  V         
Sbjct: 317 IRLDGRNTKQIRPIWCEVGYLPSPHGSSIFTRGETQALATVTLGTSREANVIDIPSEQSE 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG        S R+ G       +  RAL+ ++         + +  
Sbjct: 377 ERFYLHYNFPPFSTGEARPLRGTSRREIGHG----NLAQRALKRMIPED--CPYTVRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A +    +AL D    M+   +   +  +  G   A+         + D
Sbjct: 431 EILESNGSSSMATVCAGTLALMDAGIQMKKPVSGIAMGLITDGDKYAV---------LSD 481

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           +   ED   D+D     T  G I   Q   +    + +     L  A++ 
Sbjct: 482 ILGDEDHLGDMDFKVTGTKDG-ITACQMDIKIKGLTYEILEKALEQAREG 530



 Score = 92.1 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 78/228 (34%), Gaps = 27/228 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R IS+      K A+G+ +V+ G+  LL T        E V        +    A  G  
Sbjct: 16  RTISIETGKLAKQADGAVVVRMGNAMLLATVVANKEPGEGVDFLPLTVDYREKFAAAGRF 75

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE+   R   +     R++ R LR +         Q++I   ++  D    
Sbjct: 76  P---GGFFKRES---RPSDQEILTMRLVDRVLRPLFPEEYYCEVQVMI--QLMSHDENV- 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                     + D L  +   +          G ++ +  G + G  +++ +  E     
Sbjct: 127 ----------MPDALAGLAASACLAVSDIPFDGPISEVRVGRINGQFVINPNAKE--LTQ 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D + ++  S   V +    E    S+      +  A + I   I+ Q
Sbjct: 175 SDMDIMVGASKEFVAMV-EGEMDEVSEKDMADAIRFAHEAIKTQIEAQ 221


>gi|46907557|ref|YP_013946.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47094124|ref|ZP_00231847.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           str. 4b H7858]
 gi|226223932|ref|YP_002758039.1| polynucleotide phosphorylase [Listeria monocytogenes Clip81459]
 gi|81403374|sp|Q71ZZ1|PNP_LISMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|259534135|sp|C1L2N7|PNP_LISMC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|46880825|gb|AAT04123.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47017509|gb|EAL08319.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           str. 4b H7858]
 gi|225876394|emb|CAS05103.1| polynucleotide phosphorylase (PNPase) [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 723

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ N++R +S    +     GS L   G T  L+  TL    E ++   +   ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G    R A   R+ G       +  RAL+ V+         I +  
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           +V++++G +  A+I G+ +A+ D                 +K  VA I+ G++       
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S+      L  AK+    +++
Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 537



 Score = 95.5 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 26/230 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69
           +S+    ++K A G+ L+++GDT +LT A           +     +       G +P  
Sbjct: 16  LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KRE   GR   R+    R+I R +R +         QI      +  D     AA
Sbjct: 74  -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ VAL                    +G +A +  G + G  +++    +    D+  
Sbjct: 130 MLGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
               T    I  V+  A+    S++     +    + I  L + Q+ +I+
Sbjct: 177 TVAGTYDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223


>gi|255322462|ref|ZP_05363607.1| polyribonucleotide nucleotidyltransferase [Campylobacter showae
           RM3277]
 gi|255300370|gb|EET79642.1| polyribonucleotide nucleotidyltransferase [Campylobacter showae
           RM3277]
          Length = 731

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 95/243 (39%), Gaps = 22/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGW 58
           +R  GR+  ++R IS+   +   A GSCL   G T  L  ATL  +    M+   T+ G 
Sbjct: 341 VRADGRELKEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGTDGDAQMYDMLTEKGA 400

Query: 59  IT----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +T      Y     S G     +A   R+ G       +  RAL   +D+++     I +
Sbjct: 401 VTDKFMFNYNFPGFSVGEASPLKAPGRRELGHG----NLAKRALAPSIDVNS--PYTIRL 454

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++++++G +  A++ G  +AL               +  + +G   A+         +
Sbjct: 455 VSEILESNGSSSMASVCGGSLALRAAGVDTPKLVAGVAMGLIFEGDKHAV---------L 505

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED   D+D     +  G I  +Q   +    S D     L  A++    ++ L 
Sbjct: 506 TDIMGLEDHDGDMDFKVAGSKDG-ITALQMDIKLGGISLDVLKEALLQAREGRLHILNLM 564

Query: 235 KDV 237
           +  
Sbjct: 565 EKA 567



 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 79/252 (31%), Gaps = 49/252 (19%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
           V+K A G+ L++  +T +L T   E+            ++   T   G +P   G  VKR
Sbjct: 19  VAKQASGAVLLRVKNTVVLATVAREDTQVSEDFLPLTVQYIEKTYAAGRIP---GGYVKR 75

Query: 77  EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
           E    + G       R+I R+LR +         QI++       +   +  A+  A VA
Sbjct: 76  ET---KPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVMVLSCDPEVDLQVVALNAASVA 132

Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE--------------D 182
           L+                  +   V  +  G +    +++    E              D
Sbjct: 133 LY-------------LSDIPVNAPVCGVRVGYIDNKFVINPSNSELKTSALDLYVAGVKD 179

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERAT-------------FSQDHFFAMLNLAKDRIAD 229
             + ++   + T+   IV +                     FS+D     +  A   I  
Sbjct: 180 ELLMIEMRSIPTEKDEIVPIALDPMMDPNLSGVIAMQDMNEFSEDLIVEAIAEAGKAILR 239

Query: 230 LIKLQKDVISNE 241
                ++  S  
Sbjct: 240 ASNAYEEAFSKH 251


>gi|332976716|gb|EGK13552.1| polyribonucleotide nucleotidyltransferase [Psychrobacter sp.
           1501(2011)]
          Length = 702

 Score =  116 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 93/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59
           R+ GR  + +R + +   V  Y  GS L   G+T  L T TL     + + ++  G I  
Sbjct: 320 RIDGRDLDTVRALDIQVGVLPYTHGSALFTRGETQALVTTTLGNSRDVNLIDSLAGTIQD 379

Query: 60  --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +      R+ G      R+  R +++++  S      I +  +
Sbjct: 380 HFMLHYNFPHFSVGETGREGVPKRREIGHG----RLARRGVQAMLPDSDRFPYVIRVVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    M+       +  V +G   A+         + D+
Sbjct: 436 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDRFAV---------LSDI 486

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   +    + D     L  A      ++    +V
Sbjct: 487 LGDEDHLGDMDFKVAGTKDG-ITALQMDIKIEGITADIMEKALEKAHAGRIHILNAMNEV 545

Query: 238 ISN 240
           + +
Sbjct: 546 LPS 548



 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 76/235 (32%), Gaps = 34/235 (14%)

Query: 13  EISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++ +          S LV  G   +L    ++    E    +     +       G +P 
Sbjct: 17  QVIIETGRIARQANSVLVHMGGVSVLVAVVVKSEAKEGQNFFPLTVNYQEKMYAAGKIPG 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT- 127
           + G R       GR         R+I R +R +     +   QI     V+ +D      
Sbjct: 77  AYGKR------EGRPTEFETLTSRLIDRPIRPLFPEGYVNEIQITAT--VVSSDKKHYAD 128

Query: 128 -AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA  AL                     G V     G + G  +++    E    D
Sbjct: 129 IAAMIGASAALA-------------ISDAPFNGPVGGARVGFINGEYVLNPSIEELKNSD 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
           +D     T S  ++     +E A  S+D     +    ++    I ++++L K V
Sbjct: 176 LDLVVAGTKSAVLMV---ESEAAELSEDQMLGAVLYGHEQQQIVIDNIVELAKAV 227


>gi|225719528|gb|ACO15610.1| Exosome complex exonuclease MTR3 [Caligus clemensi]
          Length = 274

 Score =  116 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 87/244 (35%), Gaps = 32/244 (13%)

Query: 2   RLSG-RQENQ-MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGW 58
           R  G R ++  +R +     V    +GS  ++ G T ++ +     +V   +  ++  G 
Sbjct: 40  RPDGERDKDSSVRPLFCEVGVLTQCKGSAYIERGRTKVIASVFGPREVNKKLDFSSTTGI 99

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           ++ EY   P S+ +  +       +      I   + +  RS V L      +I I   V
Sbjct: 100 LSVEYCETPFSSSSSNRSSKSPSNEDKN---ISLFLAQTFRSTVCLHLYPKSRIDIFITV 156

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ++ DG     AIT   +AL D   ++ D              V   S  M  G  ++D  
Sbjct: 157 LENDGSAIPTAITAGALALSDASINLFDL-------------VIGASVKMSLGKALIDPC 203

Query: 179 YGEDSTIDV------DANFVMTDSGHIVEV-----QGSAERATFSQDHFFAMLNLAKDRI 227
             E+   D+        N ++     + ++      G  E++  S      ++ +A    
Sbjct: 204 KAEEEVGDMEDAEDNRGNIIIGYQPSLEQIAALLQDGVLEQSVLS-AQIRDLIKVA-KGN 261

Query: 228 ADLI 231
             L 
Sbjct: 262 PSLY 265


>gi|217964522|ref|YP_002350200.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Listeria monocytogenes HCC23]
 gi|254824610|ref|ZP_05229611.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL J1-194]
 gi|254852619|ref|ZP_05241967.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL R2-503]
 gi|254932354|ref|ZP_05265713.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           HPB2262]
 gi|255520235|ref|ZP_05387472.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           FSL J1-175]
 gi|300765429|ref|ZP_07075411.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL N1-017]
 gi|254782725|sp|B8DFZ6|PNP_LISMH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|217333792|gb|ACK39586.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Listeria monocytogenes HCC23]
 gi|258605934|gb|EEW18542.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL R2-503]
 gi|293583910|gb|EFF95942.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           HPB2262]
 gi|293593848|gb|EFG01609.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL J1-194]
 gi|300513866|gb|EFK40931.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL N1-017]
 gi|307570912|emb|CAR84091.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           L99]
 gi|332311774|gb|EGJ24869.1| Polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           str. Scott A]
          Length = 723

 Score =  116 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ N++R +S    +     GS L   G T  L+  TL    E ++   +   ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G    R A   R+ G       +  RAL+ V+         I +  
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           +V++++G +  A+I G+ +A+ D                 +K  VA I+ G++       
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S+      L  AK+    +++
Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 537



 Score = 95.2 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 26/230 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69
           +S+    ++K A G+ L+++GDT +LT A           +     +       G +P  
Sbjct: 16  LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KRE   GR   R+    R+I R +R +         QI      +  D     AA
Sbjct: 74  -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ VAL                    +G +A +  G + G  +++    +    D+  
Sbjct: 130 MLGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
               T    I  V+  A+    S++     +    + I  L + Q+ +I+
Sbjct: 177 TVAGTYDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223


>gi|134095034|ref|YP_001100109.1| polynucleotide phosphorylase/polyadenylase [Herminiimonas
           arsenicoxydans]
 gi|187610275|sp|A4G647|PNP_HERAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|133738937|emb|CAL61984.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Herminiimonas arsenicoxydans]
          Length = 710

 Score =  116 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 93/241 (38%), Gaps = 19/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I++   V     GS L   G+T  L  ATL         +   G    
Sbjct: 320 RIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIATLGTARDEQKIDALMGEYSD 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +      R+ G      R+  RAL + +      S  + +  +
Sbjct: 380 RFMLHYNMPPFATGETGRVGTPKRREIGHG----RLAKRALIAALPAPEDFSYSVRLVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +  G   A+         + D+
Sbjct: 436 ITESNGSSSMASVCGGCLALMDAGVPMQAHVAGIAMGLIKDGGKFAV---------LSDI 486

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-IADLIKLQKD 236
              ED   D+D     T +G I  +Q   +    +++     L  AK+  I  L +++K 
Sbjct: 487 LGDEDHLGDMDFKVAGTANG-ITALQMDIKIQGITKEIMQVALAQAKEGRIHILGEMEKA 545

Query: 237 V 237
           V
Sbjct: 546 V 546



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 83/232 (35%), Gaps = 36/232 (15%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ LV   DT +L T             +     +   T   G +P 
Sbjct: 16  VTLETGEIARQASGAVLVSIEDTVVLATVVARKDAKPGQDFFPLTVDYVEKTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +     R+I R +R +     L   QIII    +  +     A
Sbjct: 75  --GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGYLNEVQIIIHVMSVNPEIDPDIA 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  I++    +  T  +D
Sbjct: 130 AMIGASAALSVSGI-------------PFAGPLGAARVGYIDGQYILNPTATQLKTSQMD 176

Query: 189 ANFVMTDSGHIV---EVQGSAER-----ATFSQDHFFAMLNLAKDRIADLIK 232
                T++  ++   E Q  +E        F  D   A+++     I DL++
Sbjct: 177 LVVAGTEAAVLMVESEAQQLSEEVMLGAVVFGHDQMKAVID----AIHDLVR 224


>gi|290893558|ref|ZP_06556541.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL J2-071]
 gi|290556903|gb|EFD90434.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL J2-071]
          Length = 723

 Score =  116 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ N++R +S    +     GS L   G T  L+  TL    E ++   +   ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G    R A   R+ G       +  RAL+ V+         I +  
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           +V++++G +  A+I G+ +A+ D                 +K  VA I+ G++       
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S+      L  AK+    +++
Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 537



 Score = 95.2 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 26/230 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69
           +S+    ++K A G+ L+++GDT +LT A           +     +       G +P  
Sbjct: 16  LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KRE   GR   R+    R+I R +R +         QI      +  D     AA
Sbjct: 74  -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ VAL                    +G +A +  G + G  +++    +    D+  
Sbjct: 130 MLGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
               T    I  V+  A+    S++     +    + I  L + Q+ +I+
Sbjct: 177 TVAGTYDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223


>gi|332526743|ref|ZP_08402845.1| polynucleotide phosphorylase/polyadenylase [Rubrivivax
           benzoatilyticus JA2]
 gi|332111146|gb|EGJ11178.1| polynucleotide phosphorylase/polyadenylase [Rubrivivax
           benzoatilyticus JA2]
          Length = 769

 Score =  116 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 93/247 (37%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  ATL  +        +      
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVAATLGTERDAQRIDALAGEFED 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL +V+         + +  +
Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALVAVLPNKDEFPYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  ++L D                 LK HVA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGGCLSLLDAGV-------------PLKAHVAGIAMGLIKEGNRFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T SG I  +Q   +    +++     L  AK+    ++  
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTASG-ITALQMDIKIQGITKEIMQVALAQAKEARLHILGK 538

Query: 234 QKDVISN 240
             + +  
Sbjct: 539 MVEAVGG 545



 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 28/197 (14%)

Query: 46  KVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105
               +     +   T   G +P   G+  KRE   GR         R+I R +R +    
Sbjct: 55  GQDFFPLTVDYIEKTYAAGKIP---GSFFKRE---GRPSELETLTSRLIDRPIRPLFPEG 108

Query: 106 ALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS 165
                Q++I    +         A   A +A    L                 G + A  
Sbjct: 109 FYNEVQVVIHVLSL----NPEVQADIPAMIATSAALS---------ISGIPFNGPIGAAR 155

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHI-VEVQGSAERATFSQDHFFAML---- 220
            G + G  +++    + +   +D     T++  + VE + +      S++     +    
Sbjct: 156 VGYVNGEYVLNPSAAQLADSQMDLVVAGTEAAVLMVESEATG----LSEEVMLGAVVFGH 211

Query: 221 NLAKDRIADLIKLQKDV 237
           +  K  IA + +L ++ 
Sbjct: 212 DQGKIAIAAINELVREA 228


>gi|269120588|ref|YP_003308765.1| polyribonucleotide nucleotidyltransferase [Sebaldella termitidis
           ATCC 33386]
 gi|268614466|gb|ACZ08834.1| Polyribonucleotide nucleotidyltransferase [Sebaldella termitidis
           ATCC 33386]
          Length = 710

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 87/248 (35%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R  GR+  ++R I +         GS L   G+T  L T TL  +V       +      
Sbjct: 320 RPDGRKTEEIRPIDVEIDTLPIPHGSALFTRGETQALVTVTLGSRVNEQIVDGMEEESRK 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      A   R+ G       +  RAL+ ++         I +  +
Sbjct: 380 KFYLHYNFPPYSVGEAGFMRAPGRRELGHGS----LAERALKYMIPEQEDFPYTIRVVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  +AL      M             K  VA I+ G++        
Sbjct: 436 ITESNGSSSQASICGGSLALMAAGVPM-------------KSSVAGIAMGLIKENEEFVV 482

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     L  A +    ++  
Sbjct: 483 LTDIQGLEDHLGDMDFKVAGTKNG-ITALQMDIKITGITREIMEIALKQAHNGRMFILDK 541

Query: 234 QKDVISNE 241
              VI   
Sbjct: 542 MNAVIPEP 549



 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 83/232 (35%), Gaps = 27/232 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           + ++   +++ A G+ +V+ G T LL TAT    + E    +     +       G  P 
Sbjct: 16  VKISSGKIARQASGAVIVECGKTVLLVTATRSKEVREGTDFFPLTVDYIEKFYASGKFP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE+   R       I R+I R +R +          I+I              
Sbjct: 75  --GGFIKRES---RPSTDEVLIARLIDRPIRPLFPEGFFYGVHIVITV------------ 117

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            I+   V L + L  +   +          G V  ++ G + G  +++    E    D++
Sbjct: 118 -ISFDEVNLPENLATLGVSAALSISDIPFAGPVGGVNVGYIDGKFVLNPTPEELEISDIE 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            +   T    +  V+  A      +D     +     +I ++ + Q+  IS 
Sbjct: 177 LSVAGTADA-VTMVEAGANEIP--EDIMLEAIMFGHGKIKEMCEEQEKFISQ 225


>gi|62859375|ref|NP_001017033.1| polyribonucleotide nucleotidyltransferase 1 [Xenopus (Silurana)
           tropicalis]
 gi|89267966|emb|CAJ81388.1| polyribonucleotide nucleotidyltransferase 1 [Xenopus (Silurana)
           tropicalis]
          Length = 789

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 18/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R I+    + K   GS L + G T +L T T +        + +   +  
Sbjct: 364 RCDGRDLTSLRNINCEVDLFKPLHGSALFQRGQTQVLCTVTYDSIESSMKSDHITTALSG 423

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   ++ R+ G       +  +ALR V+         I 
Sbjct: 424 VKDKNFMLHYEFPPYATNEIGKVTGINRRELGHG----ALAEKALRPVIPKDF--PFTIR 477

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  + K        G +  Y 
Sbjct: 478 VTSEVLESNGSSSMASACGGSLALMDAGVPISAAVAGVAIGLITKYSPDK--NGEIQDYR 535

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T  G I  +Q   +            +  A     ++I+
Sbjct: 536 LLTDILGIEDYNGDMDFKMAGTSKG-ITALQADIKIPGLPLKIVMEAIQQATVAKKEIIQ 594

Query: 233 LQKDVISNE 241
           +   VIS  
Sbjct: 595 IMNKVISKP 603



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 82/220 (37%), Gaps = 29/220 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R++ ++     ++A+G  +VK GD+ ++ TA   T             +   +A  G +P
Sbjct: 60  RKLEISSGKLARFADGCAVVKLGDSSVMVTAVSRTKPSPSQFMPLVVDYREKSAAAGRIP 119

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
               N ++RE              R+I R++R +         QI+  C+++  DG    
Sbjct: 120 ---TNHLRREVG---ITPDEILTSRIIDRSVRPLFPAGYFYETQIL--CNLLAVDGVNKP 171

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI GA  AL                     G V A+  G++ G  I++    E S+ 
Sbjct: 172 DVLAINGASAALA-------------LSDIPWNGPVGAVRVGLVDGEFIINPTRKEMSSS 218

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
            ++          IV ++ +AE     Q  F   + L   
Sbjct: 219 LLNLVIAGGVQSQIVMMEAAAENVL--QQDFCHAVKLGVK 256


>gi|54298752|ref|YP_125121.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila
           str. Paris]
 gi|81369705|sp|Q5X1C7|PNP_LEGPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|53752537|emb|CAH13969.1| Polynucleotide phosphorylase (PNPase) [Legionella pneumophila str.
           Paris]
          Length = 729

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 93/244 (38%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R IS+  +  +   GSCL   G+T  +  ATL  +        I      
Sbjct: 314 RIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQILDGISGETRD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      R+  RAL +V+  +      + I  +
Sbjct: 374 RFMLHYNFPPYSVGETGQVGSPKRREIGHG----RLAKRALMAVLPDTNEFPYVLRIVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    ++       +  + +G   A+         + D+
Sbjct: 430 ITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAV---------LTDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   + +  + +     L  A +    ++ +  + 
Sbjct: 481 LGDEDHLGDMDFKVAGTEKG-ITALQMDIKISGITNEIMERALEQALEGRTHILGVMNNA 539

Query: 238 ISNE 241
           ++  
Sbjct: 540 LAEH 543



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 80/238 (33%), Gaps = 45/238 (18%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW----ITAEY------- 63
           L    V++ A+G+ +     T +L T         W +++        +T  Y       
Sbjct: 17  LETGEVARQADGAVMASMNGTQVLVTVV-------WKKDSGESNDFFPLTVNYQEKFYAI 69

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           G +P   G   KRE   GR       I R+I R +R +   +     QII     +  + 
Sbjct: 70  GKIP---GGFNKRE---GRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEV 123

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
                A+ GA  AL                     G + A   G   G  +++    E  
Sbjct: 124 SPDIIAMIGASAALS-------------ISGVPFNGPIGAARVGYKDGVYLLNPSRKEQE 170

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237
              +D     T    I+ V+  +E    S+D     +     + K  I  + +L ++V
Sbjct: 171 ESKLDLVIAGTKDA-ILMVE--SEAQELSEDIMRGAMLYGHEMMKSVIKSIEELAREV 225


>gi|294340865|emb|CAZ89260.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Thiomonas sp. 3As]
          Length = 719

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +S+   V     GS L   G+T  L  ATL       I +   G    
Sbjct: 315 RIDGRDTRTVRPLSIRTSVLPRTHGSALFTRGETQALAVATLGTDQDAQIIDALGGEYRD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +      R+ G      R+  RAL +V+      +  + +  +
Sbjct: 375 RFLLHYNMPPFATGETGRVGTPKRREIGHG----RLAKRALLAVLPKKEDFAYTMRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           V +++G +  A++ G  +AL D                 LK HVA I+ G++        
Sbjct: 431 VTESNGSSSMASVCGGCLALLDAGV-------------PLKAHVAGIAMGLIKEGNRFAV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + SG +  +Q   +    +++     L  A++    ++ +
Sbjct: 478 LTDILGDEDHLGDMDFKVAGSASG-VTALQMDIKIQGITREIMQVALAQAREARMHILGV 536

Query: 234 QKDVISN 240
            +  +  
Sbjct: 537 MQQAVGG 543



 Score = 68.6 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 78/233 (33%), Gaps = 36/233 (15%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLP 67
           ++++    +++ A G+ L+   DT +L T             +     +   T   G +P
Sbjct: 15  QVTMETGEIARQASGAVLLNMDDTVVLATVVGARTAKAGQDFFPLTVDYIEKTYAAGRIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR         R+I R +R +         Q+++   V+        
Sbjct: 75  ---GGFFKRE---GRPSENETLTSRLIDRPIRPLFPEGFFNEVQVVV--HVL-------- 118

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            +I     A  D    +   +          G V A   G + G  +++    E +   +
Sbjct: 119 -SINPEVEA--DIPALLASSAALAVSGLPFNGPVGAARVGYVNGNYVLNPSRAELADSRL 175

Query: 188 DANFVMTDSGHI-VEVQGSA-------ERATFSQDHFFAMLNLAKDRIADLIK 232
           +     T+S  + VE +          E   F    F   +N     I +L++
Sbjct: 176 ELVVAGTESAVLMVESEADQLSEEVMLEAVMFGHAQFQTAIN----AIHELVR 224


>gi|296136710|ref|YP_003643952.1| polyribonucleotide nucleotidyltransferase [Thiomonas intermedia
           K12]
 gi|295796832|gb|ADG31622.1| polyribonucleotide nucleotidyltransferase [Thiomonas intermedia
           K12]
          Length = 719

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R +S+   V     GS L   G+T  L  ATL       I +   G    
Sbjct: 315 RIDGRDTRTVRPLSIRTSVLPRTHGSALFTRGETQALAVATLGTDQDAQIIDALGGEYRD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +      R+ G      R+  RAL +V+      +  + +  +
Sbjct: 375 RFLLHYNMPPFATGETGRVGTPKRREIGHG----RLAKRALLAVLPKKEDFAYTMRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           V +++G +  A++ G  +AL D                 LK HVA I+ G++        
Sbjct: 431 VTESNGSSSMASVCGGCLALLDAGV-------------PLKAHVAGIAMGLIKEGNRFAV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + SG +  +Q   +    +++     L  A++    ++ +
Sbjct: 478 LTDILGDEDHLGDMDFKVAGSASG-VTALQMDIKIQGITREIMQVALAQAREARMHILGV 536

Query: 234 QKDVISN 240
            +  +  
Sbjct: 537 MQQAVGG 543



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 79/233 (33%), Gaps = 36/233 (15%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLP 67
           ++++    +++ A G+ L+   DT +L T             +     +   T   G +P
Sbjct: 15  QVTMETGEIARQASGAVLLNMDDTVVLATVVGARTAKAGQDFFPLTVDYIEKTYAAGRIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR       I R+I R +R +         Q+++   V+        
Sbjct: 75  ---GGFFKRE---GRPSENETLISRLIDRPIRPLFPEGFFNEVQVVV--HVL-------- 118

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            +I     A  D    +   +          G V A   G + G  +++    E +   +
Sbjct: 119 -SINPEVEA--DIPALLATSAALAVSGLPFNGPVGAARVGYVNGNYVLNPSRAELADSRL 175

Query: 188 DANFVMTDSGHI-VEVQGSA-------ERATFSQDHFFAMLNLAKDRIADLIK 232
           +     T+S  + VE +          E   F    F   +N     I +L++
Sbjct: 176 ELVVAGTESAVLMVESEADQLSEEVMLEAVMFGHAQFQTAIN----AIHELVR 224


>gi|168061313|ref|XP_001782634.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665867|gb|EDQ52537.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 817

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 82/245 (33%), Gaps = 11/245 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKH 56
           MR+ GR  NQ+RE+           GS +   G+T +L T T+   +       +     
Sbjct: 396 MRVDGRGLNQVRELQCEAGTYPALHGSSVFSRGNTQVLCTVTIGAPDDAQRLDSLVGIDR 455

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S     +   ++ R+ G       +  +AL +++         + +  
Sbjct: 456 KRFMVHYSFPPFSINEVGRTGGLNRREVGHGT----LAEKALVALLPPEEDFPYSVRVTS 511

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + +DG +  A + G  +AL D    +        +  V                 + D
Sbjct: 512 ECLASDGSSSMATVCGGSLALMDAGIPLRSHVGAVSVGLVSVSDPETGRVTEY--RILTD 569

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I  +Q   + A          L  A      ++   + 
Sbjct: 570 ILGLEDHLGDMDFKIAGTKKG-ITAIQLDIKPAGIPLHILCEALEPALVGRTQILDFMEQ 628

Query: 237 VISNE 241
           VIS+ 
Sbjct: 629 VISSP 633



 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 63/186 (33%), Gaps = 26/186 (13%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           ++S       ++A G+ +V  G+T +L T   + K   +        +  EY     + G
Sbjct: 95  KMSFETGKLARFASGAVVVGVGETKVLVTVVADYK---FDGGKDFLPLQVEYREKQYAQG 151

Query: 72  ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
                 ++RE   G    R     R+I R++R +         QII +      D     
Sbjct: 152 KIPATFMRRE---GAPKERELLCGRLIDRSVRPLFPKGFFYDSQIIANVLCSDGDQDPDV 208

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+  A  AL                    KG +  +  G + G  IV+ +  E      
Sbjct: 209 LAVNAASAALV-------------ISDIPWKGPIGCVRIGRVKGKFIVNPNMDE--FSLS 253

Query: 188 DANFVM 193
           D N V 
Sbjct: 254 DLNLVY 259


>gi|116063353|gb|AAI23081.1| polyribonucleotide nucleotidyltransferase 1 [Xenopus (Silurana)
           tropicalis]
          Length = 789

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 18/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R I+    + K   GS L + G T +L T T +        + +   +  
Sbjct: 364 RCDGRDLTSLRNINCEVDLFKPLHGSALFQRGQTQVLCTVTYDSIESSMKSDHITTALSG 423

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   ++ R+ G       +  +ALR V+         I 
Sbjct: 424 VKDKNFMLHYEFPPYATNEIGKVTGINRRELGHG----ALAEKALRPVIPKDF--PFTIR 477

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  + K        G +  Y 
Sbjct: 478 VTSEVLESNGSSSMASACGGSLALMDAGVPISAAVAGVAIGLITKYSPDK--NGEIQDYR 535

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T  G I  +Q   +            +  A     ++I+
Sbjct: 536 LLTDILGIEDYNGDMDFKMAGTSKG-ITALQADIKIPGLPLKIVMEAIQQATVAKKEIIQ 594

Query: 233 LQKDVISNE 241
           +   VIS  
Sbjct: 595 IMNKVISKP 603



 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 82/220 (37%), Gaps = 29/220 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R++ ++     ++A+G  ++K GD+ ++ TA   T             +   +A  G +P
Sbjct: 60  RKLEISSGKLARFADGCAVLKLGDSSVMVTAVSRTKPSPSQFMPLVVDYREKSAAAGRIP 119

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
               N ++RE              R+I R++R +         QI+  C+++  DG    
Sbjct: 120 ---TNHLRREVG---ITPDEILTSRIIDRSVRPLFPAGYFYETQIL--CNLLAVDGVNKP 171

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI GA  AL                     G V A+  G++ G  I++    E S+ 
Sbjct: 172 DVLAINGASAALA-------------LSDIPWNGPVGAVRVGLVDGEFIINPTRKEMSSS 218

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
            ++          IV ++ +AE     Q  F   + L   
Sbjct: 219 LLNLVIAGGVQSQIVMMEAAAENVL--QQDFCHAVKLGVK 256


>gi|312885678|ref|ZP_07745313.1| polyribonucleotide nucleotidyltransferase [Mucilaginibacter paludis
           DSM 18603]
 gi|311301885|gb|EFQ78919.1| polyribonucleotide nucleotidyltransferase [Mucilaginibacter paludis
           DSM 18603]
          Length = 715

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 89/247 (36%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           RL GR   Q+R I         A GS +   G+T  LTT TL  K    + +      + 
Sbjct: 320 RLDGRTTTQIRPIWSEVGYLPAAHGSAVFTRGETQALTTVTLGAKDDEQMIDGAFINGYQ 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     STG          R+ G       +  R+L+ V+         I I  D
Sbjct: 380 KFLLHYNFPGFSTGEVRPNRGAGRREIGHG----NLAMRSLKQVLPDENENPYTIRIVSD 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 436 ILESNGSSSMATVCAGTLALMDAGIK-------------IKAPVSGIAMGLITNPEGTKY 482

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T+ G IV  Q   +    S +     L+ AK+    ++
Sbjct: 483 AILSDILGDEDHLGDMDFKVTGTEKG-IVACQMDLKINGLSYEVLSKALDQAKEGRLHIL 541

Query: 232 KLQKDVI 238
              K  I
Sbjct: 542 NEMKKTI 548



 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 90/236 (38%), Gaps = 28/236 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA--TLE--EKVPMWIRNTKHGWITAEYGML 66
           R I +      K A+GS +VK GDT LL T   T E  E V     +  +    A  G +
Sbjct: 16  RTIEIETGKLAKQADGSVVVKMGDTMLLATVVSTPEAKEGVDFLPLSVDYQEKYAATGRI 75

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  ++REA   R       I R++ RALR +         Q++I   +I AD    
Sbjct: 76  P---GGFLRREA---RLSDYEVLISRLVDRALRPLFPDDYHADVQVMIS--LISADKNI- 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                     + DCL  +   +          G ++ +    + G  +++    +     
Sbjct: 127 ----------MPDCLAGLAASAAIAVSDIPFNGPISEVRVAKIDGKLVINPTVSDLERAS 176

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           ++   V   +  I  V+G  E +   +      +  A D I   ++ Q + ++ EV
Sbjct: 177 LEF-IVAGSASDINMVEG--ECSEIQEAELVEAIKFAHDAIKIQVQAQVE-LAAEV 228


>gi|291296202|ref|YP_003507600.1| 3' exoribonuclease [Meiothermus ruber DSM 1279]
 gi|290471161|gb|ADD28580.1| 3' exoribonuclease [Meiothermus ruber DSM 1279]
          Length = 714

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 92/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           R  GR   Q+R I +   V     GS +   G+T +L   TL       + +        
Sbjct: 325 RADGRTPTQVRPIWIESNVLPKTHGSAIFSRGETQVLGVVTLGTGRDAQLVDDLGIETED 384

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +   VS R+ G       +  R LR+V+         I +  D
Sbjct: 385 PFLVHYNFPPYSTGEVRRLRGVSRREVGHG----NLAKRGLRAVLPSREEFPYTIRVVGD 440

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           V++++G +  A +    +AL D                 LK HVA ++ G++        
Sbjct: 441 VLESNGSSSMATVCAGCLALLDAGV-------------PLKKHVAGVAMGLVKEGEQAVV 487

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED+  D+D     T  G +  +Q   +    + +   A L  A++    ++ L
Sbjct: 488 LTDILGLEDALGDMDFKVTGTRDG-VTALQMDIKIKGLTPEIMRAALYQAREARLHILSL 546

Query: 234 QKDVISNE 241
            +  +   
Sbjct: 547 MERAVPTH 554



 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 90/231 (38%), Gaps = 30/231 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R +++     +K+  GS  V +G+T ++ TA   +             +T E+     + 
Sbjct: 20  RTLTIETGKYAKHVSGSVWVTYGETVVMATAQASDA----PIQADFLPLTVEFEERHYAV 75

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G    + ++RE   GR G ++    R+  R +R +         Q+++   V+ AD    
Sbjct: 76  GRIPGSFMRRE---GRPGEKAILSARLTDRPIRPLFPKGFRHEVQVLLT--VLSAD---- 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                       D L  +   +         +G +A++  G+  G  +++    EDS +D
Sbjct: 127 -------QENTPDILGPIAASAALMLSDIPWEGPIASVRVGLQNGRLVLNPVAQEDSQLD 179

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
                V      I+ V+  A+    S+D     L  A   +  +++LQ+ +
Sbjct: 180 ---LVVAGSKEAIIMVEAGAQE--VSEDRLVEALEFAHRAMQPILELQEQM 225


>gi|198434569|ref|XP_002126010.1| PREDICTED: similar to Exosome complex exonuclease MTR3 (mRNA
           transport regulator 3 homolog) (Exosome component 6)
           [Ciona intestinalis]
          Length = 276

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 55/147 (37%), Gaps = 6/147 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWIT 60
           R  GR   Q R++ L   V   A+GS   +   T ++ +    + + M        G + 
Sbjct: 35  RADGRYVTQPRDVFLQCGVITQAKGSAYFEMNKTKVICSVYGPKDIEMREEFQINKGKLK 94

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            E    P S+             G    E   ++  A+ S V L      QI +   V++
Sbjct: 95  CELKYAPYSSPKHGDHI-----PGASDVEKSDILLEAISSGVCLQRYPKSQIDVYVIVLE 149

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDC 147
            DG    AAIT A VAL D    M D 
Sbjct: 150 DDGSVMPAAITAASVALVDAGIEMYDV 176


>gi|171058181|ref|YP_001790530.1| polynucleotide phosphorylase/polyadenylase [Leptothrix cholodnii
           SP-6]
 gi|226702660|sp|B1Y823|PNP_LEPCP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|170775626|gb|ACB33765.1| Polyribonucleotide nucleotidyltransferase [Leptothrix cholodnii
           SP-6]
          Length = 767

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  ATL           +      
Sbjct: 317 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTDQDSQRIDALAGDFRD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +      R+ G      R+  RAL  ++         I +  +
Sbjct: 377 SFLFHYNMPPFATGEVGRMGTTKRRETGHG----RLAKRALVPLLPPKDEFGYTIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +A+ D    M+       +  + +G+  A+         + D+
Sbjct: 433 ITESNGSSSMASVCGGCLAMMDAGVPMKAHVAGIAMGLIKEGNRFAV---------LTDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T +G +  +Q   +    +++     L  AK+    ++    + 
Sbjct: 484 LGDEDHLGDMDFKVAGTTAG-VTALQMDIKIQGITKEIMQVALAQAKEARLHILGKMVEA 542

Query: 238 ISN 240
           +  
Sbjct: 543 MGT 545



 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 82/233 (35%), Gaps = 31/233 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +S+ A G+ +V   DT +L T       +     +     +   T   G +P 
Sbjct: 18  VTLETGEISRQAGGAVIVNIDDTVVLATVVGAKNAKPGQDFFPLTVDYIEKTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  KREA   +         R+I R LR +          +++    +  +     A
Sbjct: 77  --GSFFKREA---KPSELEVLTSRLIDRPLRPLFPEGFYNEVHVVVHVLSLNPEASADIA 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+  AL                     G V A   G + G  +++    +  +  +D
Sbjct: 132 ALIGSSAALAISGI-------------PFNGPVGAARVGYVNGEYVLNPGPTQLKSSKMD 178

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237
                T++  ++     +E    +++     +      AK  IA + +L +D 
Sbjct: 179 LVVAGTEAAVLMV---ESEADQLTEEVMLGAVVYGHEQAKVAIAAINELVRDA 228


>gi|302878493|ref|YP_003847057.1| polyribonucleotide nucleotidyltransferase [Gallionella
           capsiferriformans ES-2]
 gi|302581282|gb|ADL55293.1| polyribonucleotide nucleotidyltransferase [Gallionella
           capsiferriformans ES-2]
          Length = 701

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 101/247 (40%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R+I++   V     GS L   G+T  +  ATL         +   G  T 
Sbjct: 311 RIDGRDTRTVRQITIRNGVLARTHGSALFTRGETQAVVVATLGSMRDAQKVDALQGEFTD 370

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P +TG   +  +   R+ G      R+  RAL +V+         + I  +
Sbjct: 371 RFMLHYNFPPFATGETGRVGSPKRREIGHG----RLAKRALVAVLPSEEDFGYAVRIVSE 426

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +++ D                 LK HVA I+ G++        
Sbjct: 427 ITESNGSSSMASVCGGCLSMLDAGV-------------PLKAHVAGIAMGLIKEGNRFAV 473

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +++G I  +Q   +    +++   A L+ AK+    ++ +
Sbjct: 474 LSDILGDEDHLGDMDFKVAGSENG-ITALQMDIKINGITREIMQAALSQAKEGRLHILGI 532

Query: 234 QKDVISN 240
            K+ +S 
Sbjct: 533 MKESMSG 539



 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 67/197 (34%), Gaps = 31/197 (15%)

Query: 45  EKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDL 104
            +   +     +   T   G +P   G+  KRE   GR   +     R+I R LR +   
Sbjct: 51  PEQDFFPLTVDYQEKTYAAGKIP---GSFFKRE---GRASEKEILTSRLIDRPLRPLFPE 104

Query: 105 SALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
           S     QII       ++  +   ++ GA  AL                    +G +AA 
Sbjct: 105 SFYNEVQIIATVMSSDSEIDSDIPSLIGASAALAISGI-------------PFEGPIAAA 151

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIV---EVQGSAER-----ATFSQDHF 216
             G   G  +++    E  T  +D     TD   ++   E Q  +E        F  + F
Sbjct: 152 RVGYANGQYLLNPTKTELVTSQMDLVVAGTDRAVLMVESEAQQLSEEVMLGAVMFGHEQF 211

Query: 217 FAMLNLAKDRIADLIKL 233
             ++N     I ++ + 
Sbjct: 212 QIVIN----AINEMAEA 224


>gi|222151113|ref|YP_002560267.1| polyribonucleotide nucleotidyltransferase [Macrococcus caseolyticus
           JCSC5402]
 gi|254782726|sp|B9EBG0|PNP_MACCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|222120236|dbj|BAH17571.1| polyribonucleotide nucleotidyltransferase [Macrococcus caseolyticus
           JCSC5402]
          Length = 703

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 92/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +     GS L   G T  L+ AT     E ++   +   + 
Sbjct: 314 VRPDGRRPDEIRPLDSEVGILPRVHGSGLFTRGQTQALSVATLGALGEHQIIDGLGVEEE 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RAL  V+         I +  
Sbjct: 374 KRYMHHYNFPNFSVGETGPIRAPGRREIGHG----ALGERALLQVIPDEKEFPYTIRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I G+ +AL D                 +K  VA I+ G++       
Sbjct: 430 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTKDENYT 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G I  +Q   +    ++D     L  A+     +++
Sbjct: 477 ILSDIQGMEDALGDMDFKVAGTKEG-ITAIQMDIKINGLTEDILREALEQARVGRLHIME 535

Query: 233 LQKDVISNE 241
                IS  
Sbjct: 536 HMLSTISEP 544



 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 90/232 (38%), Gaps = 28/232 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L+TAT       V  +     +       G +P
Sbjct: 15  RPLIIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDVDFFPLMVNYEEKLYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR G  +    R+I R +R +         Q+I     +  D     
Sbjct: 75  ---GGFNKRE---GRPGEDATLTSRLIDRPIRPLFPKGYRHDVQVISIVMSVDPDNSPEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G++ G  I++ D  +     +
Sbjct: 129 AAMIGSSMALA-------------VSDIPFEGPIAGVNVGLVDGELIINPDVQQREVSVL 175

Query: 188 DANFVMTDSGHIVEVQG-SAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D       +GH   V    A     ++D     +      I  L++ Q+ +I
Sbjct: 176 DLQV----AGHFDAVNMVEAGAKEVAEDKMLEAIMFGHAEIKKLVEFQQSII 223


>gi|160902045|ref|YP_001567626.1| polynucleotide phosphorylase/polyadenylase [Petrotoga mobilis SJ95]
 gi|187610306|sp|A9BH73|PNP_PETMO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|160359689|gb|ABX31303.1| Polyribonucleotide nucleotidyltransferase [Petrotoga mobilis SJ95]
          Length = 695

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 100/248 (40%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           R+ GR  +++R+I+    +     GS L   G+T  L T TL   + + + +T    +  
Sbjct: 321 RVDGRTCDEIRDITCEVGLIPRVHGSALFTRGETQSLGTVTLGAPLDVQVLDTIFSDEEK 380

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +   VS R+ G       +  RA ++++         I +  D
Sbjct: 381 RFMLHYNFPPFSTGEVKRLRGVSRREIGHGH----LAERAHKNLIPSDEEFPYTIRVVSD 436

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           +++++G +  A++  A +AL D                 ++ HVA I+ G++     + +
Sbjct: 437 ILESNGSSSMASVCSASLALMDAGV-------------PIQKHVAGIAMGLIFENDNFVV 483

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I   Q   + +  +++     L  AK     ++  
Sbjct: 484 LTDILGMEDHLGDMDFKVAGTRDG-ITAFQMDVKTSQVNKEVLQKALEKAKIARLKILDK 542

Query: 234 QKDVISNE 241
             + I   
Sbjct: 543 MYETIPQP 550



 Score = 75.5 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 80/218 (36%), Gaps = 27/218 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R++ +    V+K + GS ++ F ++ +L TA   E+    ++      +T E+     + 
Sbjct: 11  RKLRIEHGKVAKQSLGSVMLTFNESTILVTADASEET---VKGQDFFPLTVEFQEKFYAV 67

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G      +KRE   G+    +    R+I R +R +   +     Q+I     +       
Sbjct: 68  GKIPGGFIKRE---GKPSDEAILAARLIDRPIRPLFPENFFNEVQVITTVFSMLNGDSIE 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
           T  ITGA +AL+                    G VA +  G + G  I      +     
Sbjct: 125 TWGITGASLALN-------------LSPIPFNGIVAGVRIGYVDGQFIAFPTQEQLKNSK 171

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           +D     T    +  V+G  E    S++     L  A+
Sbjct: 172 IDMVVAGTKDA-VTMVEG--ESLEVSEEEMVEALMFAQ 206


>gi|189346136|ref|YP_001942665.1| polynucleotide phosphorylase/polyadenylase [Chlorobium limicola DSM
           245]
 gi|257096673|sp|B3EH06|PNP_CHLL2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189340283|gb|ACD89686.1| Polyribonucleotide nucleotidyltransferase [Chlorobium limicola DSM
           245]
          Length = 736

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           RL GR   ++R IS+   +   A GS L   G+T  L T TL  K        + N    
Sbjct: 335 RLDGRTLEEVRPISIELGIIPRAHGSALFTRGETQALVTITLGTKKDAQSVDNLTNNADK 394

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RA++ V          + I  D
Sbjct: 395 KFMLHYNFPPFSVGETGRIGSTGRREIGHG----NLAERAIKMVAPPEQEFPYTVRIVSD 450

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +++++G +  A++ G  +AL D    +    +   +  + +G   A+         + D+
Sbjct: 451 ILESNGSSSMASVCGGTLALMDGGVPIRKPVSGIAMGLIKEGSNYAV---------LSDI 501

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I   Q   +          + L  A+     ++   ++ 
Sbjct: 502 LGNEDHLGDMDFKVSGTRDG-ITACQMDIKIDGLDYHILESALEQARRGRLHILDKMEEA 560

Query: 238 ISN 240
           I +
Sbjct: 561 IPS 563



 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 81/229 (35%), Gaps = 28/229 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTA-----TLEEKVPMWIRNTKHGWITAEYGMLP 67
           IS+      K A+GS +V+ GDT +L T      T       +    ++    +  G  P
Sbjct: 18  ISIETGKMAKQADGSVVVRLGDTMVLATVVSSKKTPPPNQDYFPLQVEYREKYSAAGKFP 77

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE+   R   +     R+I RALR +     L   QII+             
Sbjct: 78  ---GGFFKRES---RPSEKEILSARLIDRALRPLFPDGYLFETQIIVTV----------- 120

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
             I+   +   D L  +   +            ++ +  G + G  I++ D  E    D+
Sbjct: 121 --ISSDQINDADVLGGLAASAAIMVSDIPFHNAMSEVRVGRINGKFIINPDVNELVNSDL 178

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D     T +  I  ++G  E    S+      +    D I  L  LQ +
Sbjct: 179 DICIGGT-TDTICMLEG--EMKEISEAEMLDAIKFGHDAIRRLCALQNE 224


>gi|328553436|gb|AEB23928.1| polynucleotide phosphorylase/polyadenylase [Bacillus
           amyloliquefaciens TA208]
 gi|328911772|gb|AEB63368.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
           LL3]
          Length = 707

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 88/248 (35%), Gaps = 26/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR  +Q+R +S    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G            G R      +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPQFSVGE----TGPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKSGEYYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T+ G +  +Q   +    S++     L  AK    +++ 
Sbjct: 478 VLTDIQGMEDALGDMDFKVAGTEKG-VTALQMDIKIEGLSREILEEALQQAKKGRMEILN 536

Query: 233 LQKDVISN 240
                +  
Sbjct: 537 SMLSTLGE 544



 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 95/233 (40%), Gaps = 28/233 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ +V++GDT +L   TA+ E K +  +     +       G +P
Sbjct: 15  RQLTVETGQLAKQANGAVMVRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q+I     +  +  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  I++     D     
Sbjct: 129 AAMFGSSLALC-------------VSDIPFEGPIAGVTVGRIDGQFIINPTV--DQLEKS 173

Query: 188 DAN-FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D N  V      I  V+  A+     ++     +    + I  LI  Q+++++
Sbjct: 174 DINLIVAGTKDAINMVEAGADEVP--EEIMLEAIMFGHEEIKRLIAFQEEIVA 224


>gi|308173632|ref|YP_003920337.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
           DSM 7]
 gi|307606496|emb|CBI42867.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
           DSM 7]
          Length = 705

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 88/248 (35%), Gaps = 26/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR  +Q+R +S    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G            G R      +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPQFSVGE----TGPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKSGEYYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T+ G +  +Q   +    S++     L  AK    +++ 
Sbjct: 478 VLTDIQGMEDALGDMDFKVAGTEKG-VTALQMDIKIEGLSREILEEALQQAKKGRMEILN 536

Query: 233 LQKDVISN 240
                +  
Sbjct: 537 SMLSTLGE 544



 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 95/233 (40%), Gaps = 28/233 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ +V++GDT +L   TA+ E K +  +     +       G +P
Sbjct: 15  RQLTVETGQLAKQANGAVMVRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q+I     +  +  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  I++     D     
Sbjct: 129 AAMFGSSLALC-------------VSDIPFEGPIAGVTVGRIDGQFIINPTV--DQLEKS 173

Query: 188 DAN-FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D N  V      I  V+  A+     ++     +    + I  LI  Q+++++
Sbjct: 174 DINLIVAGTKDAINMVEAGADEVP--EEIMLEAIMFGHEEIKRLIAFQEEIVA 224


>gi|152979779|ref|YP_001353149.1| polynucleotide phosphorylase/polyadenylase [Janthinobacterium sp.
           Marseille]
 gi|187610276|sp|A6SY02|PNP_JANMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|151279856|gb|ABR88266.1| polyribonucleotide nucleotidyltransferase [Janthinobacterium sp.
           Marseille]
          Length = 711

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 92/243 (37%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I++   V     GS L   G+T  L  ATL         +   G    
Sbjct: 320 RIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIATLGTARDEQKIDALMGEYSD 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +      R+ G      R+  RAL + +      S  + +  +
Sbjct: 380 RFMLHYNMPPFATGETGRVGTPKRREIGHG----RLAKRALVAALPAPEDFSYSVRLVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  + +G   A+         + D+
Sbjct: 436 ITESNGSSSMASVCGGCLALMDAGVPMQSHVAGIAMGLIKEGSKFAV---------LTDI 486

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T +G I  +Q   +    +++     L  AK+    ++   +  
Sbjct: 487 LGDEDHLGDMDFKVAGTANG-ITALQMDIKIQGITKEIMQVALAQAKEGRVHILGEMEKA 545

Query: 238 ISN 240
           + +
Sbjct: 546 VPS 548



 Score = 85.1 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 84/233 (36%), Gaps = 27/233 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
           +++L    +++ A G+ LV   DT +L T   +         +     +   T   G +P
Sbjct: 15  QVTLETGEIARQASGAVLVSIEDTVVLATVVAKKDAKPGQDFFPLTVDYVEKTYAAGRIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR   +     R+I R +R +     L   QIII    +  +     
Sbjct: 75  ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGYLNEVQIIIHVMSVNPEIDPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ GA  AL                     G V A   G + G  +++    + +  D+
Sbjct: 129 AAMIGASAALSVAGI-------------PFAGPVGAARVGYIDGQYVLNPTTSQLAKSDL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     T    I  +   +E    S++     +    +++  +I    D++ +
Sbjct: 176 DLVVAGT---EIAVLMVESEAKQLSEEVMLGAVVFGHEQMKAVIDAIHDLVRD 225


>gi|154686086|ref|YP_001421247.1| polynucleotide phosphorylase/polyadenylase [Bacillus
           amyloliquefaciens FZB42]
 gi|187470933|sp|A7Z4U0|PNP_BACA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|154351937|gb|ABS74016.1| PnpA [Bacillus amyloliquefaciens FZB42]
          Length = 707

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 88/248 (35%), Gaps = 26/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR  +Q+R +S    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G            G R      +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPQFSVGE----TGPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKSGEYYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T+ G +  +Q   +    S++     L  AK    +++ 
Sbjct: 478 VLTDIQGMEDALGDMDFKVAGTEKG-VTALQMDIKIEGLSREILEEALQQAKKGRMEILN 536

Query: 233 LQKDVISN 240
                +  
Sbjct: 537 SMLSTLGE 544



 Score = 86.3 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 95/233 (40%), Gaps = 28/233 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ +V++GDT +L   TA+ E K +  +     +       G +P
Sbjct: 15  RQLTVEAGQLAKQANGAVMVRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q+I     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  +++     D     
Sbjct: 129 AAMFGSSLALC-------------VSDIPFEGPIAGVTVGRIDGKFVINPTV--DQLEKS 173

Query: 188 DAN-FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D N  V      I  V+  A+     ++     +    + I  LI  Q+++++
Sbjct: 174 DINLIVAGTKDAINMVEAGADEVP--EEIMLEAIMFGHEEIKRLIAFQEEIVA 224


>gi|313674338|ref|YP_004052334.1| polyribonucleotide nucleotidyltransferase [Marivirga tractuosa DSM
           4126]
 gi|312941036|gb|ADR20226.1| polyribonucleotide nucleotidyltransferase [Marivirga tractuosa DSM
           4126]
          Length = 713

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 90/248 (36%), Gaps = 28/248 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           RL GR+ +++R I         A GS +   G+T  LTT TL  K+   + +    + + 
Sbjct: 321 RLDGRKLDEIRPIWSEIDYLPSAHGSAVFTRGETQSLTTVTLGTKLDEQMVDGAVHSGYN 380

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     STG          R+ G       +  RAL+ ++         I +  D
Sbjct: 381 KFILHYNFPAFSTGEARPNRGPGRREVGHG----NLALRALKQILPTPDELPYTIRVVSD 436

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 437 ILESNGSSSMATVCAGSLALMDAGI-------------PIKAPVSGIAMGLISDPETGKY 483

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T+ G I   Q   +    S +     LN AK     + 
Sbjct: 484 AILSDILGDEDHIGDMDFKVTGTEKG-ITACQMDIKVDGLSSELMMEALNQAKAGRDHIR 542

Query: 232 KLQKDVIS 239
                 I+
Sbjct: 543 NEMSKTIA 550



 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 33/237 (13%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
             G      REIS+      K A+GS  V+ GDT LL T        E V     +  + 
Sbjct: 14  PDG------REISIETGKLAKQADGSVEVRMGDTILLATVVSNKEAREGVDFLPMSVDYQ 67

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
              A  G +P   G  +KRE   G+         R++ RALR +         Q++I   
Sbjct: 68  EKFASSGKIP---GGFLKRE---GKLSDYEVLTSRLVDRALRPLFPSDYHAETQVMIQLF 121

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
            ++ +              L D L  +   +          G ++ +  G + G  I++ 
Sbjct: 122 SLEEN-------------DLPDALAALAASAALTASDIPFAGPISEVRVGRVNGEMIINP 168

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           +  +    D+D     T   +I+ V+G  E    S+      +N A + I    + Q
Sbjct: 169 NSKQLEESDIDMIVAATID-NIMMVEG--ELKEISEQEMVEAINFAHESIKLQCQAQ 222


>gi|319761758|ref|YP_004125695.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus
           denitrificans BC]
 gi|330826538|ref|YP_004389841.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus
           denitrificans K601]
 gi|317116319|gb|ADU98807.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus
           denitrificans BC]
 gi|329311910|gb|AEB86325.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus
           denitrificans K601]
          Length = 731

 Score =  115 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 93/247 (37%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  +TL  +        +      
Sbjct: 317 RIDGRDTRTVRPIEIRTSVLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFED 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +         I +  +
Sbjct: 377 RFLFHYNMPPFATGEVGRMGSTKRREVGHG----RLAKRALVACLPSKEEFPYTIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G  +++ D    M             K HVA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLIKEDNKFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     L  AK+    ++  
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTAG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538

Query: 234 QKDVISN 240
            ++ +  
Sbjct: 539 MQEAMGE 545



 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 75/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           +++    +++ A G+ LV   DT +L T       +     +     +   T   G +P 
Sbjct: 18  VTMETGEIARQASGAVLVNIDDTVVLATVVASKNAKPGQDFFPLTVDYIEKTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  KREA   +         R+I R +R +          ++I    +  +     A
Sbjct: 77  --GSFFKREA---KPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTISLNPEVDADIA 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+     AL                     G + A   G + G  +++          +D
Sbjct: 132 AMIATSAALSVSGI-------------PFNGPIGAARVGYINGEYVLNPGQTARKNSQMD 178

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237
                T++  ++     +E     +D     +       K  I  + +L +D 
Sbjct: 179 LVVAGTETAVLMV---ESEALQLPEDVMLGAVVYGHEQGKIAIDAIHELVRDA 228


>gi|242006246|ref|XP_002423964.1| polyribonucleotide nucleotidyltransferase 1, putative [Pediculus
           humanus corporis]
 gi|212507240|gb|EEB11226.1| polyribonucleotide nucleotidyltransferase 1, putative [Pediculus
           humanus corporis]
          Length = 708

 Score =  115 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 90/252 (35%), Gaps = 24/252 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIR 52
           +R  GR   ++R I     + K   GS L + G T +  T  L+        +++ M   
Sbjct: 297 IRCDGRLPVELRNIECESNLFKPLHGSALFQRGQTQVFCTVALDSPSSALKMDRISMLTS 356

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
             K       Y   P +T    K     G  G R      +  +AL++ +  +      I
Sbjct: 357 GLKEKNFFVHYEFPPFATKEIGK----LGPIGRREIGHGSLAEKALKANIPENF--PFTI 410

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            +  +V++++G +  A + G  +AL D    +        +  V K        G++   
Sbjct: 411 RLTSEVLESNGSSSMATVCGGTLALLDAGVPLIKECAGVAMGVVTKWD--DDKSGIIDYV 468

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL-- 230
            + D+   ED   D+D     T + HI  +Q   +            +  AK  I+    
Sbjct: 469 ILTDILGIEDYFGDMDMKVAGTKN-HITAIQMDVKTPGLPIKIVMESITQAKQAISTTLT 527

Query: 231 -----IKLQKDV 237
                + LQK V
Sbjct: 528 RMFKDVDLQKKV 539



 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 81/219 (36%), Gaps = 34/219 (15%)

Query: 22  KYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYGMLPRSTGNRV 74
           K+ +G   V F DT ++ TA   +K       VP+ +   +     A  G +P    N +
Sbjct: 10  KFTDGCATVTFKDTTVMATAVSSDKGGMYSGFVPLTVSFQQKA---AALGRIPL---NFL 63

Query: 75  KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
           +RE     Q      I RMI R+LR +   +     QI+ +   +  +      +I  A 
Sbjct: 64  RRELG---QNENEILISRMIDRSLRPLFPANFNNETQIVCNPLAMDGENFPDVLSINAAS 120

Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT 194
            AL                +    G V A+  G++    I++ D    S   ++   V  
Sbjct: 121 AALA-------------VSNIPWNGPVGAVRVGLVDDNIIINPDKNLLSKSSLNLVVVSK 167

Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
              ++V ++GS             +L   K  +++  K+
Sbjct: 168 AKHYVVMLEGSCSNIL-----LNDLLRAIKKGVSECQKI 201


>gi|149927537|ref|ZP_01915791.1| polynucleotide phosphorylase/polyadenylase [Limnobacter sp. MED105]
 gi|149823810|gb|EDM83036.1| polynucleotide phosphorylase/polyadenylase [Limnobacter sp. MED105]
          Length = 714

 Score =  115 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 94/249 (37%), Gaps = 26/249 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR    +R I++   V   A GS L   G+T  L   TL       +          
Sbjct: 320 RIDGRDTRTVRPITVRTGVLPRAHGSALFTRGETQALVVTTLGTGRDEQMIDAVAGEYRD 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  A   R+ G      R+  RA+  ++         + +  +
Sbjct: 380 RFMFHYNMPPYATGECGRMGAPKRREIGHG----RLARRAVEMMLPAPEDFQYTMRVVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G  ++L D                 LK  VA I+ G++        
Sbjct: 436 ITESNGSSSMASVCGGALSLMDAGV-------------PLKQLVAGIAMGLIKEENKFAV 482

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G +  +Q   +    +++     L  A++    ++ +
Sbjct: 483 LTDILGDEDHLGDMDFKVAGTENG-VTALQMDIKIQGITKEIMQVALAQAREGRMHILGI 541

Query: 234 QKDVISNEV 242
            K+     V
Sbjct: 542 MKEATGGNV 550



 Score = 56.3 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 58/194 (29%), Gaps = 29/194 (14%)

Query: 37  LLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR 96
           ++   + +     +     +       G +P   G   KRE   G+   +     R+I R
Sbjct: 44  VVAAKSAKPGQDFFPLTVDYVEKFYAAGRIP---GGFFKRE---GKGTEQETLNARLIDR 97

Query: 97  ALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV 156
            LR +         Q+ +    I  +      A+ GA  AL                   
Sbjct: 98  PLRPLFPEGFFNEVQVTLTVMSINPEVNPDIPAMLGASAALSIAGI-------------P 144

Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERAT------ 210
             G V     G +    +++    +     +D     T++  ++ V+  A   +      
Sbjct: 145 FNGPVGGARVGYINDQYVLNPTATQLKDSKMDLIVAGTEAA-VLMVESEAHELSEEIMLG 203

Query: 211 ---FSQDHFFAMLN 221
              F  +   A +N
Sbjct: 204 GIMFGHEQMQAAIN 217


>gi|323144053|ref|ZP_08078697.1| polyribonucleotide nucleotidyltransferase [Succinatimonas hippei
           YIT 12066]
 gi|322416166|gb|EFY06856.1| polyribonucleotide nucleotidyltransferase [Succinatimonas hippei
           YIT 12066]
          Length = 720

 Score =  115 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 90/244 (36%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMW--IRNTKHG 57
           R+ GR    +R I++   +     GS L   G+T  + T TL  E     +  +  T+  
Sbjct: 319 RIDGRTLRMIRPITVASGILPRVHGSALFTRGETQAIATCTLGSERDAQTFEDMSGTRSD 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  RALR+V+         I +  +
Sbjct: 379 RFILHYNFPPYCVGETGLIGSPKRREIGHG----RLAKRALRAVLPDMERFPYTIRVVSE 434

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D     +       +  V +G   A+         + D+
Sbjct: 435 ITESNGSSSMASVCGGSLALFDAGVPCKAAVAGIAMGLVKEGDRVAV---------LTDI 485

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  A      L+K+    
Sbjct: 486 MGDEDHLGDMDFKVAGTTEG-VTALQMDIKTDGITREIMQQALTDAHAARLHLLKIMGRA 544

Query: 238 ISNE 241
           + N 
Sbjct: 545 LPNP 548



 Score = 52.0 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 73/239 (30%), Gaps = 44/239 (18%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           I+L      + A+ + +    DT +  T     +    +       +T  Y     + G 
Sbjct: 17  ITLETGAIGRQADSAVMASMDDTTVFATVVCNRRE--QVEGRDFFPLTVNYQERSYAVGR 74

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R LR +                    DG     
Sbjct: 75  IPVSFFRRE---GRASEGETLISRLIDRPLRPLFP------------------DGFVNEV 113

Query: 129 AITGAWVAL-----HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
            +    ++       D +  +   +          G + A   G + G  +++    E  
Sbjct: 114 QVVVTVMSANPEIPTDIISIIAASAALSTSGLPWNGPLGAARVGYINGQYVLNPLTSETE 173

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
             D+D   V      +V V+  +E     +D     +    +        Q+ V+ NE+
Sbjct: 174 ESDLDL-VVAGSDKAVVMVE--SEAKILPEDVMLGAVMYGHE--------QQQVVINEI 221


>gi|258645480|ref|ZP_05732949.1| polyribonucleotide nucleotidyltransferase [Dialister invisus DSM
           15470]
 gi|260402833|gb|EEW96380.1| polyribonucleotide nucleotidyltransferase [Dialister invisus DSM
           15470]
          Length = 694

 Score =  115 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 89/235 (37%), Gaps = 28/235 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTK 55
           +R  GR  +++R IS    +     GS L   G T  LT  TL       I     + T+
Sbjct: 311 IRPDGRALDEIRPISCEVGLLPRVHGSALFTRGQTQALTITTLAPMSETQIIDDLTQETE 370

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I  +Y     S G          R+ G       +  RAL  V+         I + 
Sbjct: 371 KRYIH-QYNFPSYSVGETKSSRGPGRREIGHG----ALAERALIPVIPTVEEFPYAIRVV 425

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            ++++++G +  A++ G+ ++L +                 +K  VA I+ G++      
Sbjct: 426 SEILESNGSSSQASVCGSTMSLMNAGV-------------PIKAPVAGIAMGLVNEGEHF 472

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             + D+   ED+  D+D     T  G I  +Q   +    S++   A L  A+  
Sbjct: 473 TVLTDIQGMEDALGDMDFKVAGTAKG-ITAIQMDIKIHGLSREILLAALQQAQKG 526



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 90/236 (38%), Gaps = 31/236 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTT--ATLE--EKVPMWIRNTKHGWITAEYGML 66
           R + +      K A G+ LV++G+T +L T  A+ E  E +  +     +       G +
Sbjct: 12  RSLIVETGKMAKQASGAVLVRYGETVVLVTSTASKEAREGMDFFPLTVDYEEKMYAVGKM 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI--QADGG 124
           P   G  ++RE   GR G  +    R+I R +R + D        I +   V+    D  
Sbjct: 72  P---GGFLRRE---GRPGNSAILNARLIDRPIRPLFD--KRCRNDIHVMATVLSVDYDNA 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
                + GA  +L                     G +A +  G + G  +++    +   
Sbjct: 124 PELCGMLGASASL-------------GISDIPWDGPIAGVRVGCVDGKFVINPTQEQLKV 170

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             ++     +++  I+ V+G A+ A   ++     +    + I +L+  QK +I  
Sbjct: 171 STLNITVAGSETA-ILMVEGGAQEAP--EEDVLDAIMFGHETIKELVAFQKKIIEE 223


>gi|254992778|ref|ZP_05274968.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           FSL J2-064]
          Length = 658

 Score =  115 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ N++R +S    +     GS L   G T  L+  TL    E ++   +   ++
Sbjct: 251 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 310

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G    R A   R+ G       +  RAL+ V+         I +  
Sbjct: 311 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 366

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           +V++++G +  A+I G+ +A+ D                 +K  VA I+ G++       
Sbjct: 367 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 413

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S+      L  AK+    +++
Sbjct: 414 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 472



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G  +KRE   GR   R+    R+I R +R +         QI      +  D     AA+
Sbjct: 9   GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAAM 65

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            G+ VAL                    +G +A +  G + G  +++    +    D+   
Sbjct: 66  LGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLT 112

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
              T    I  V+  A+    S++     +    + I  L + Q+ +I+
Sbjct: 113 VAGTYDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 158


>gi|116872762|ref|YP_849543.1| polynucleotide phosphorylase/polyadenylase [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|123460999|sp|A0AID2|PNP_LISW6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116741640|emb|CAK20764.1| polynucleotide phosphorylase (PNPase) [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 723

 Score =  115 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ N++R +S    +     GS L   G T  L+  TL    E ++   +   ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G    R A   R+ G       +  RAL+ V+         I +  
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEDFPYTIRLVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           +V++++G +  A+I G+ +A+ D                 +K  VA I+ G++       
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S+      L  AK+    +++
Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 537



 Score = 95.5 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 26/230 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69
           +S+    ++K A G+ L+++GDT +LT A           +     +       G +P  
Sbjct: 16  LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KRE   GR   R+    R+I R +R +         QI      +  D     AA
Sbjct: 74  -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ VAL                    +G +A +  G + G  +++    +    D+  
Sbjct: 130 MLGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
               T    I  V+  A+    S++     +    + I  L + Q+ +I+
Sbjct: 177 TVAGTYDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223


>gi|229918674|ref|YP_002887320.1| polyribonucleotide nucleotidyltransferase [Exiguobacterium sp.
           AT1b]
 gi|259534123|sp|C4L6J6|PNP_EXISA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|229470103|gb|ACQ71875.1| Polyribonucleotide nucleotidyltransferase [Exiguobacterium sp.
           AT1b]
          Length = 738

 Score =  115 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 96/249 (38%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ + +R ++    +   A G  L   G T +++ AT     + ++   I   ++
Sbjct: 315 VRPDGRRPDVIRPLASEVGLLPRAHGVGLFTRGQTQVMSVATLGVIGDAQIIDGIGLEEN 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      A   R+ G       +  RAL  ++   A     I +  
Sbjct: 375 KRFMHHYNFPPFSVGEARPVRAPGRREIGHG----ALGERALLPIIPKEADFPYTIRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY--- 172
           +V++++G +  A+I G+ +AL D                 +K  VA I+ G++  G    
Sbjct: 431 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLIMEGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + A  +++     L  A+     ++ 
Sbjct: 478 VLTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIAGITREILEEALEQARVGRLHILD 536

Query: 233 LQKDVISNE 241
              + +   
Sbjct: 537 HMLETLETP 545



 Score = 95.5 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 88/232 (37%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +S+    ++K A GS LV++GDT +L T T     + +  +     +       G +P
Sbjct: 15  RPLSVEVGQLAKQANGSALVRYGDTVVLATVTASKAPKDLDFFPLTVNYEEKLYSVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   GR G  +    R+I R +R +         Q++I       D     
Sbjct: 75  ---GGFLRRE---GRPGENAILTSRLIDRPIRPLFPDGFRHDIQVMIYVMSNDPDCSAEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           A + G  +AL                     G +A ++ G + G  +++    +    D+
Sbjct: 129 AGMLGTSIALS-------------ISDVPFDGPIAGVTVGRVDGEFVINPTTAQLEKTDL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T +  I  V+  A      +D     +    + I  LI  Q++++ 
Sbjct: 176 ELQVAGTSTA-INMVEAGANEVP--EDVMLESILFGHEEIKRLIAFQQEIVE 224


>gi|294791724|ref|ZP_06756872.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 6_1_27]
 gi|294456954|gb|EFG25316.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 6_1_27]
          Length = 689

 Score =  115 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 92/250 (36%), Gaps = 28/250 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTATLEEKVPMWIRN----TK 55
           +R  GRQ +++R IS    V     GS L   G T +L  T          I      T+
Sbjct: 309 IRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVTTVAPLSEKQTIDGLGVETE 368

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I   Y     S G          R+ G       +  RAL  V+         + + 
Sbjct: 369 KRYIH-HYNFPSFSVGETRSSRGPGRREIGHG----ALAERALVPVIPSEEDFPYALRLV 423

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V++++G +  A++ G+ ++L D                 +K  VA I+ G++      
Sbjct: 424 SEVLESNGSSSMASVCGSTLSLMDAGV-------------PIKAPVAGIAMGLVTQGEHY 470

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED+  D+D     T  G +  +Q   + +  S++     L  A      ++
Sbjct: 471 TILTDIQGMEDALGDMDFKVAGTAKG-VTAIQMDIKISGLSREILQEALEQAHKGRMHIM 529

Query: 232 KLQKDVISNE 241
            +  D I+  
Sbjct: 530 GIMLDTIAEP 539



 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 90/234 (38%), Gaps = 28/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ +V +GDT +L TAT  ++   +  +     +       G LP
Sbjct: 11  RMLTIETGELAKQASGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVDYEEKMYAVGRLP 70

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KREA   R    +    R+I R +R + +        ++     +  D     
Sbjct: 71  ---GGFIKREA---RPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPAI 124

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
             + GA  AL                     G +A +  G + G  +V+         + 
Sbjct: 125 CGMIGASAALS-------------ISDVPWNGPIAGVRMGRINGEFVVNPTKS--QLEET 169

Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D N V+      I+ V+G AE     +D    ++  A + I  ++  Q+D+ + 
Sbjct: 170 DLNIVVAGTKDAILMVEGGAEEVP--EDIILEVIMAAHEEIKKIVAFQEDMTAK 221


>gi|291533814|emb|CBL06927.1| RNase PH [Megamonas hypermegale ART12/1]
          Length = 91

 Score =  115 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/83 (45%), Positives = 52/83 (62%), Gaps = 1/83 (1%)

Query: 161 VAAISCGM-LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
           +AAIS G+     PI+DL Y EDST   D N VMT  GH VE+QG+ E+  F+ + F  M
Sbjct: 1   MAAISVGISKDNEPILDLCYEEDSTAIADMNIVMTGEGHFVEIQGTGEKQPFTHEQFSKM 60

Query: 220 LNLAKDRIADLIKLQKDVISNEV 242
           L  A+  I +LI  QKD++ N++
Sbjct: 61  LAYAQKGIDELISYQKDILGNDL 83


>gi|294793588|ref|ZP_06758725.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 3_1_44]
 gi|294455158|gb|EFG23530.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 3_1_44]
          Length = 689

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 92/250 (36%), Gaps = 28/250 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTATLEEKVPMWIRN----TK 55
           +R  GRQ +++R IS    V     GS L   G T +L  T          I      T+
Sbjct: 309 IRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVTTVAPLSEKQTIDGLGVETE 368

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I   Y     S G          R+ G       +  RAL  V+         + + 
Sbjct: 369 KRYIH-HYNFPSFSVGETRSSRGPGRREIGHG----ALAERALVPVIPSEEDFPYALRLV 423

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V++++G +  A++ G+ ++L D                 +K  VA I+ G++      
Sbjct: 424 SEVLESNGSSSMASVCGSTLSLMDAGV-------------PIKAPVAGIAMGLVTQGEHY 470

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED+  D+D     T  G +  +Q   + +  S++     L  A      ++
Sbjct: 471 TILTDIQGMEDALGDMDFKVAGTAKG-VTAIQMDIKISGLSREILQEALEQAHKGRMHIM 529

Query: 232 KLQKDVISNE 241
            +  D I+  
Sbjct: 530 GIMLDTIAEP 539



 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 90/234 (38%), Gaps = 28/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ +V +GDT +L TAT  ++   +  +     +       G LP
Sbjct: 11  RMLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVDYEEKMYAVGRLP 70

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KREA   R    +    R+I R +R + +        ++     +  D     
Sbjct: 71  ---GGFIKREA---RPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPAI 124

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
             + GA  AL                     G +A +  G + G  +V+         + 
Sbjct: 125 CGMIGASAALS-------------ISDVPWNGPIAGVRMGRINGEFVVNPTKS--QLEET 169

Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D N V+      I+ V+G AE     +D    ++  A + I  ++  Q+D+ + 
Sbjct: 170 DLNIVVAGTKDAILMVEGGAEEVP--EDIILEVIMAAHEEIKKIVAFQEDMTAK 221


>gi|313638085|gb|EFS03354.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri FSL
           S4-171]
          Length = 723

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ N++R +S    +     GS L   G T  L+  TL    E ++   +   ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G    R A   R+ G       +  RAL+ V+         I +  
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEDFPYTIRLVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           +V++++G +  A+I G+ +A+ D                 +K  VA I+ G++       
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S+      L  AK+    +++
Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILEEALTQAKEGRLHILE 537



 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 84/229 (36%), Gaps = 26/229 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69
           +S+    ++K A G+ L+++GDT +LT A           +     +       G +P  
Sbjct: 16  LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KRE   GR   R+    R+I R +R +         QI      +  D     AA
Sbjct: 74  -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ VAL                     G +A +  G + G  +++    +    D+  
Sbjct: 130 MLGSSVALV-------------ISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
               T    I  V+  A+    S++     +    + I  L + Q+ +I
Sbjct: 177 TVAGTHDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQII 222


>gi|224418070|ref|ZP_03656076.1| polynucleotide phosphorylase/polyadenylase [Helicobacter canadensis
           MIT 98-5491]
 gi|253827399|ref|ZP_04870284.1| polyribonucleotide nucleotidyltransferase [Helicobacter canadensis
           MIT 98-5491]
 gi|313141607|ref|ZP_07803800.1| nucleotidyltransferase [Helicobacter canadensis MIT 98-5491]
 gi|253510805|gb|EES89464.1| polyribonucleotide nucleotidyltransferase [Helicobacter canadensis
           MIT 98-5491]
 gi|313130638|gb|EFR48255.1| nucleotidyltransferase [Helicobacter canadensis MIT 98-5491]
          Length = 715

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 83/242 (34%), Gaps = 22/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW------IRNTK 55
           R  GR+  ++R IS+       A  S L   G T  L  ATL  ++          +   
Sbjct: 333 RADGRELKEVRPISIETNFLPNAHSSALFTRGQTQALVVATLGGEMDAQSYELLTDKAPL 392

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P S G      A   R+ G       +  RAL + V    L  + I + 
Sbjct: 393 KERFMVHYNFPPFSVGEASSISAPGRRELGHG----NLAKRALEASVINGDL--KTIRLV 446

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A + G  +AL               +  V +    AI         + 
Sbjct: 447 SEILESNGSSSMATVCGGSLALAAAGIKCTSLIAGVAMGLVCENDKYAI---------LT 497

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     +  G I  +Q   +      +     L  AK+    ++ L +
Sbjct: 498 DIMGLEDHDGDMDFKIAGSRRG-ITAMQMDIKLGGLKSEILQKALMQAKEARNHILDLME 556

Query: 236 DV 237
           + 
Sbjct: 557 EA 558



 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 84/229 (36%), Gaps = 41/229 (17%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72
            +K   GS  ++ G+  +L T  ++ +    +       +T +Y       G  P   G 
Sbjct: 20  FAKQCSGSVYLQSGNNVVLATIAIDTQE---VVEEDFLPLTVQYIEKAYAAGKFP---GG 73

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KREA   + G       R+I R+LR +         QI +   V+ AD          
Sbjct: 74  YIKREA---KPGDFETLSARIIDRSLRPLFPKDYCYPTQITL--MVLSADED-------- 120

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD--LDYGEDSTID---- 186
              A    L      +  +     L   V+A+  G + G  +++  L   E+ST+D    
Sbjct: 121 ---ADLQLLALNAASAALYVSEIPLSFPVSAVRIGRIEGEFVINPSLKALEESTLDLFVS 177

Query: 187 -VDANFVMTDSGHIVEVQGSAERATF-----SQDHFFAMLNLAKDRIAD 229
            V  + +M +      V    E   F     S++    +L +AK  I+ 
Sbjct: 178 GVKEDLLMIEMRSFGGVAIHQENTEFSANELSEEEMIEVLEIAKKAISQ 226


>gi|149185848|ref|ZP_01864163.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter sp.
           SD-21]
 gi|148830409|gb|EDL48845.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter sp.
           SD-21]
          Length = 763

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 95/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR+ +Q+R I     +     GS L   G+T  + T TL     E++   +    + 
Sbjct: 316 RIDGRKLDQVRPIEAMVGLLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGLEGLSYN 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +    S R+ G      ++  RAL  V+         I I  D
Sbjct: 376 NFMLHYNFPPYSVGEVGRFGFTSRRETGHG----KLAWRALHPVLPDHEDFPYTIRILSD 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +++ D    +E   +   +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGEDFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     +++G I  +Q   + A  +Q+     L  AK     ++      
Sbjct: 483 LGDEDHLGDMDFKVAGSEAG-ITTMQMDIKVAGITQEIMAKALEQAKAGRQHILGEMAKA 541

Query: 238 ISN 240
           + +
Sbjct: 542 LGS 544



 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 80/227 (35%), Gaps = 33/227 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A+G+ L  +G+T +L       +++E    +     +    +  G +P 
Sbjct: 16  LTLETGQIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLTVHYQEKFSAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR-- 126
             G   KRE   GR   +     R+I R +R +          I + C V+  DG T   
Sbjct: 75  --GGFFKRE---GRATEKETLTSRLIDRPVRPLFPEGFYNE--INVICQVLSFDGETEPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD--LDYGEDST 184
             A+  A  AL                     G + A   G   G   ++  L    D  
Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIGAARVGFRNGEYELNPSLANALDEE 174

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             +D     T    ++ V+  +E    +++     +  A D    ++
Sbjct: 175 GRLDLVVAATQDA-VMMVE--SEAKELTEEEMLGAVAFAHDEARKVV 218


>gi|313633394|gb|EFS00232.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri FSL
           N1-067]
          Length = 723

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ N++R +S    +     GS L   G T  L+  TL    E ++   +   ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G    R A   R+ G       +  RAL+ V+         I +  
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEDFPYTIRLVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           +V++++G +  A+I G+ +A+ D                 +K  VA I+ G++       
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S+      L  AK+    +++
Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILEEALTQAKEGRLHILE 537



 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 84/229 (36%), Gaps = 26/229 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69
           +S+    ++K A G+ L+++GDT +LT A           +     +       G +P  
Sbjct: 16  LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KRE   GR   R+    R+I R +R +         QI      +  D     AA
Sbjct: 74  -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ VAL                     G +A +  G + G  +++    +    D+  
Sbjct: 130 MLGSSVALV-------------ISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
               T    I  V+  A+    S++     +    + I  L + Q+ +I
Sbjct: 177 TVAGTHDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQII 222


>gi|315302988|ref|ZP_07873706.1| polyribonucleotide nucleotidyltransferase [Listeria ivanovii FSL
           F6-596]
 gi|313628638|gb|EFR97053.1| polyribonucleotide nucleotidyltransferase [Listeria ivanovii FSL
           F6-596]
          Length = 723

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ N++R +S    +     GS L   G T  L+  TL    E ++   +   ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G    R A   R+ G       +  RAL+ V+         I +  
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEDFPYTIRLVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           +V++++G +  A+I G+ +A+ D                 +K  VA I+ G++       
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S+      L  AK+    +++
Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILEEALTQAKEGRLHILE 537



 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 84/229 (36%), Gaps = 26/229 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69
           +S+    ++K A G+ L+++GDT +LT A           +     +       G +P  
Sbjct: 16  LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KRE   GR   R+    R+I R +R +         QI      +  D     AA
Sbjct: 74  -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ VAL                     G +A +  G + G  +++    +    D+  
Sbjct: 130 MLGSSVALV-------------ISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
               T    I  V+  A+    S++     +    + I  L + Q+ +I
Sbjct: 177 TVAGTHDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQII 222


>gi|289434612|ref|YP_003464484.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289170856|emb|CBH27398.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 723

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ N++R +S    +     GS L   G T  L+  TL    E ++   +   ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G    R A   R+ G       +  RAL+ V+         I +  
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEDFPYTIRLVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           +V++++G +  A+I G+ +A+ D                 +K  VA I+ G++       
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S+      L  AK+    +++
Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILEEALTQAKEGRLHILE 537



 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 84/229 (36%), Gaps = 26/229 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69
           +S+    ++K A G+ L+++GDT +LT A           +     +       G +P  
Sbjct: 16  LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KRE   GR   R+    R+I R +R +         QI      +  D     AA
Sbjct: 74  -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ VAL                     G +A +  G + G  +++    +    D+  
Sbjct: 130 MLGSSVALV-------------ISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
               T    I  V+  A+    S++     +    + I  L + Q+ +I
Sbjct: 177 TVAGTHDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQII 222


>gi|282848815|ref|ZP_06258208.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula ATCC
           17745]
 gi|282581469|gb|EFB86859.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula ATCC
           17745]
          Length = 689

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 92/250 (36%), Gaps = 28/250 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTATLEEKVPMWIRN----TK 55
           +R  GRQ +++R IS    V     GS L   G T +L  T          I      T+
Sbjct: 309 IRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVTTVAPLSEKQTIDGLGVETE 368

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I   Y     S G          R+ G       +  RAL  V+         + + 
Sbjct: 369 KRYIH-HYNFPSFSVGETRSSRGPGRREIGHG----ALAERALVPVIPSEEDFPYALRLV 423

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V++++G +  A++ G+ ++L D                 +K  VA I+ G++      
Sbjct: 424 SEVLESNGSSSMASVCGSTLSLMDAGV-------------PIKAPVAGIAMGLVTQGEHY 470

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED+  D+D     T  G +  +Q   + +  S++     L  A      ++
Sbjct: 471 TILTDIQGMEDALGDMDFKVAGTAKG-VTAIQMDIKISGLSREILQEALEQAHKGRMHIM 529

Query: 232 KLQKDVISNE 241
            +  D I+  
Sbjct: 530 GIMLDTIAEP 539



 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 90/234 (38%), Gaps = 28/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ +V +GDT +L TAT  ++   +  +     +       G LP
Sbjct: 11  RTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVDYEEKMYAVGRLP 70

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KREA   R    +    R+I R +R + +        ++     +  D     
Sbjct: 71  ---GGFIKREA---RPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPAI 124

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
             + GA  AL                     G +A +  G + G  +V+         + 
Sbjct: 125 CGMIGASAALS-------------ISDVPWNGPIAGVRMGRINGEFVVNPTKA--QLEET 169

Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D N V+      I+ V+G AE     +D    ++  A + I  ++  Q+D+ + 
Sbjct: 170 DLNIVVAGTKDAILMVEGGAEEVP--EDIILEVIMAAHEEIKKIVAFQEDMTAK 221


>gi|120609946|ref|YP_969624.1| polynucleotide phosphorylase/polyadenylase [Acidovorax citrulli
           AAC00-1]
 gi|187470931|sp|A1TLL2|PNP_ACIAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|120588410|gb|ABM31850.1| 3' exoribonuclease [Acidovorax citrulli AAC00-1]
          Length = 758

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  +TL  +        +      
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFED 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL +V+         I +  +
Sbjct: 377 RFMFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVAVLPTKEEFPYTIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G  +++ D    M             K HVA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLIKEDNRFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     L  AK+    ++  
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTAG-ITALQMDIKIQGITKEIMQVALAQAKEARLHILGK 538

Query: 234 QKDVISN 240
            ++ +  
Sbjct: 539 MQEAMGE 545



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 76/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           + +    +++ A G+ LV   DT +L T     + +     +     +   T   G +P 
Sbjct: 18  VVMETGEIARQATGAVLVNIDDTVVLATVVASKSAKPGQDFFPLTVDYIEKTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  KREA   +         R+I R +R +          ++I    +  +     A
Sbjct: 77  --GSFFKREA---KPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTVSLNPEVDADIA 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+     AL                     G + A   G + G  +++          +D
Sbjct: 132 AMIAVSAALSVSGI-------------PFNGPIGAARVGYINGEYVLNPGQTARKNSQMD 178

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237
                T++  ++     +E    S+D     +       +  I  + +L +D 
Sbjct: 179 LVVAGTEAAVLMV---ESEAQQLSEDIMLGAVVFGHEQGRIAINAIHELVRDA 228


>gi|302502983|ref|XP_003013452.1| hypothetical protein ARB_00270 [Arthroderma benhamiae CBS 112371]
 gi|291177016|gb|EFE32812.1| hypothetical protein ARB_00270 [Arthroderma benhamiae CBS 112371]
          Length = 302

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 73/208 (35%), Gaps = 13/208 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWI 59
           +RL GR+ N++R +      +  + GS  +  G+T +L T     +             I
Sbjct: 14  LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGR--SQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                +   +  +R K+ A     G R  + E+  ++  A +  +         I +   
Sbjct: 74  NVVVNLAGFANVDRKKKSAAGSGGGDRQATTELATLLRDAFQPHIHAHLYPRSTISVHVS 133

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC--GMLCG---- 171
           V+ +DG    A +    +AL D    M        +    +    A++     + G    
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGRASTPAVTAESAQIGGINES 193

Query: 172 -YPIVDLDYGED---STIDVDANFVMTD 195
             P++D+   E+     + V     M D
Sbjct: 194 LDPLLDISAPEEVELPYMTVANTNPMPD 221


>gi|23099059|ref|NP_692525.1| polynucleotide phosphorylase/polyadenylase [Oceanobacillus
           iheyensis HTE831]
 gi|81746388|sp|Q8EQT7|PNP_OCEIH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|22777287|dbj|BAC13560.1| polyribonucleotide nucleotidyltransferase alpha chain
           [Oceanobacillus iheyensis HTE831]
          Length = 705

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 89/249 (35%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    V     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKVDEIRPLSSRIHVLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLDLEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G            G R      +  RAL  V+         I +  
Sbjct: 375 KRFMHHYNFPQYSVGE----TGPIRGPGRREIGHGALGERALEKVIPDDKEFPYTIRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKSGDDYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T +G +  +Q   +    S+D     L+ AK     ++ 
Sbjct: 478 ILTDIQGMEDALGDMDFKVAGTANG-VTALQMDIKIDGLSRDILEEALSQAKKGRMQILD 536

Query: 233 LQKDVISNE 241
                I   
Sbjct: 537 SMLATIKEP 545



 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLPR 68
           + ++    ++K A G+C++ +GDT +L   TA+ E K +P +     +       G +P 
Sbjct: 16  KFTVEVGELAKQANGACMIHYGDTSVLSVATASSEPKDLPFFPLTVNYEERLYAVGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR   ++    R+I R +R +         Q+I     +  D  +  A
Sbjct: 75  --GGFIKRE---GRPSEKAILSSRLIDRPIRPLFPDGFRNEVQVISTVMSVDQDCPSEIA 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                    +  +A ++ G + G  I++    +++  D++
Sbjct: 130 AMIGSSIALS-------------VSDIPFEQPIAGVNVGRVDGEFIINPTIEQEAKSDIE 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                T    I  V+  A      +D     +    + I  L+  Q++++ 
Sbjct: 177 LTVAGTKDA-INMVEAGANEVP--EDIMLEAIMFGHEEIKRLVAFQEELVK 224


>gi|116748674|ref|YP_845361.1| polynucleotide phosphorylase/polyadenylase [Syntrophobacter
           fumaroxidans MPOB]
 gi|187611325|sp|A0LHM4|PNP_SYNFM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116697738|gb|ABK16926.1| Polyribonucleotide nucleotidyltransferase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 699

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 93/246 (37%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR+ +++R I++   V     GS +   G+T +L   TL    +E+    +      
Sbjct: 313 RIDGRRFDEIRPINIQAGVLPRTHGSAVFTRGETQVLAVVTLGSSSDEQKIEALAGETFK 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  R++++V+         I +  +
Sbjct: 373 SFMLHYNFPAFSVGEVRPLRGPGRREIGHG----ALAERSVKAVLPRDGEFPYTIRVVSE 428

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           V++++G +  A + G+ +AL D                 +   V  I+ G++        
Sbjct: 429 VLESNGSSSMATVCGSSLALMDAGV-------------PITEPVGGIAMGLVKEGDKIIV 475

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     ++ G I  +Q   + A   +      L  A+     ++  
Sbjct: 476 LSDILGDEDHLGDMDFKVTGSERG-ITAIQMDVKIAGIDRGIMQRALEQARAGRIFILGK 534

Query: 234 QKDVIS 239
            K+V+S
Sbjct: 535 MKEVLS 540



 Score = 99.4 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 91/231 (39%), Gaps = 28/231 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R +      +++ A GS L+++GDT +L  AT E+++           +  +Y  +  + 
Sbjct: 12  RPMVFEAGEIARQAGGSVLMRYGDTVVLIAATKEDRI---REGIDFVPLMVDYQEMSYAA 68

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G       +RE   GR   +     R+I R +R +         Q++     +  +    
Sbjct: 69  GRIPGGFFRREI--GRPSEKETLTSRLIDRPIRPLFPKKYCYETQVVATVLSVDMENEPD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+TGA  ALH                   +G VAA+  G + G   ++    E   ++
Sbjct: 127 VVALTGASTALH-------------ISPVPFQGPVAAVRVGRINGSFAINPSAKE--LLE 171

Query: 187 VDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            D N V+  S   +V V+G A+    S+D     ++     I  ++  Q +
Sbjct: 172 SDLNVVVAGSRDAVVMVEGGAD--FVSEDDLVDAIDFGHKAILPILDAQDE 220


>gi|326422493|gb|EGD71890.1| Putative exosome complex RNA-binding protein [Candidatus
           Parvarchaeum acidophilus ARMAN-5_'5-way FS']
          Length = 253

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 94/248 (37%), Gaps = 19/248 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL  R+  + R +++   V  +++GS  V+ G+T ++    +    P +      G + 
Sbjct: 17  LRLDQREAFEGRRMAIKDNVINHSDGSAYVELGNTKVIAGVKVLNGTP-FPDRPADGALI 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQIII 114
             + +   ++          G +   S E+ R+  R +R   ++DLS L    G   + +
Sbjct: 76  VNFELSELTSNY-------PGDRINSSIEVGRVTDRGIRESNLIDLSKLCVEEGKTVLFV 128

Query: 115 DCDV--IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
             D+  I  +G    A    A  A+ +    +E    KF L         + +   + G 
Sbjct: 129 YVDIVCINNEGNLFDAGNIAALRAILNTRYSIEGKEGKFSLPIDRTKLAISHTFTKINGT 188

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
              D    E++  D   +  +  S  I  +Q       F+ +     +  A +   +  K
Sbjct: 189 IFFDPSAEEENVEDTKLSIGI--SDKINSLQKGG-DGFFTAEEVDKCIEKAIELREERFK 245

Query: 233 LQKDVISN 240
           +  D IS+
Sbjct: 246 ILMDGISD 253


>gi|326316095|ref|YP_004233767.1| polyribonucleotide nucleotidyltransferase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372931|gb|ADX45200.1| polyribonucleotide nucleotidyltransferase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 759

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  +TL  +        +      
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFED 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL +V+         I +  +
Sbjct: 377 RFMFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVAVLPTKEEFPYTIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G  +++ D    M             K HVA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLIKEDNRFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     L  AK+    ++  
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTAG-ITALQMDIKIQGITKEIMQVALAQAKEARLHILGK 538

Query: 234 QKDVISN 240
            ++ +  
Sbjct: 539 MQEAMGE 545



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 78/237 (32%), Gaps = 39/237 (16%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           + +    +++ A G+ LV+   T +L T     + +     +     +   T   G +P 
Sbjct: 18  VVMETGEIARQANGAVLVEIDGTVILATVAASKSAKPGQDFFPLTVDYIEKTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  KREA   +         R+I R +R +     L    +++    +  +     A
Sbjct: 77  --GSFFKREA---KPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVVHTVSLNPEVDADIA 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G   AL                     G + A   G + G  +++          +D
Sbjct: 132 AMIGVSAALAISGI-------------PFAGPIGAARVGYINGEYVLNPGQTARKNSQMD 178

Query: 189 ANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
                T++  ++   E Q  +E        F  +        A   I  + +L ++ 
Sbjct: 179 LVVAGTEAAVLMVESEAQQLSEDIMLGGVVFGHEQ-------ANIAINAIHELVREA 228


>gi|222100220|ref|YP_002534788.1| Polyribonucleotide nucleotidyltransferase [Thermotoga neapolitana
           DSM 4359]
 gi|254782743|sp|B9K8Y9|PNP_THENN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|221572610|gb|ACM23422.1| Polyribonucleotide nucleotidyltransferase [Thermotoga neapolitana
           DSM 4359]
          Length = 707

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 89/243 (36%), Gaps = 18/243 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56
           +R  GR+ N++R IS    +     GS L   G+T  L   TL   + + I +T      
Sbjct: 316 IRADGRKPNEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPMDVQIIDTLLEEGV 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P  TG        S R+ G       +  RAL++++         I +  
Sbjct: 376 KRFMLHYNFPPFCTGEVKPLRGPSRREIGHGH----LAERALKNMLPPEEEFPYTIRVVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A +    +AL D    +        +  +L+     I         + D
Sbjct: 432 EILESNGSSSMATVCSGSLALMDAGVPIRKHVAGIAMGLILEEDAEVI---------LTD 482

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I   Q   + +  S +     L  A++    ++    +
Sbjct: 483 IIGMEDHYGDMDFKVAGTRDG-ITAFQMDCKVSGVSDELLMKALMQAREARMYILDKMYE 541

Query: 237 VIS 239
            IS
Sbjct: 542 TIS 544



 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 94/239 (39%), Gaps = 37/239 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY------- 63
           RE+ +    V+K + G+ LV+FGDT +L TA + +KV   I       +T E+       
Sbjct: 11  RELVVQHGKVAKQSSGAVLVRFGDTAVLATANISDKV---IEGIDFVPLTVEFQERFYAA 67

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           G +P   G  +KRE   G+    +    R+I R +R +         Q+I+   V+ AD 
Sbjct: 68  GKIP---GGFIKRE---GKPSESAILSARLIDRPIRPLFPKKLRNEIQVIVT--VLSADP 119

Query: 124 G--TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
                   I    +AL+                   +G VA I  G   G  I      +
Sbjct: 120 NVPPDVVGIFAVSLALN-------------VSKIPFEGIVAGIRIGYRDGQFIAFPTEED 166

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                +D     T    +  V+G A+    S++     L  A   I +L+  Q++++S 
Sbjct: 167 IEKGLMDITVAGTKDA-VTMVEGEAKE--VSEEDMVKALRFAHSVIKELVDFQEEILSE 222


>gi|237738958|ref|ZP_04569439.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           2_1_31]
 gi|229423558|gb|EEO38605.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           2_1_31]
          Length = 699

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 93/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
           R+ GR   ++R +     V     GS L   G+T  L   TL  K    + +      + 
Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKADEQLIDDLEKEYYK 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RALR V+         I +  +
Sbjct: 384 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGS----LAERALRYVIPSEEEFPYTIRVVSE 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  ++L                   +K HVA I+ G++        
Sbjct: 440 ITESNGSSSQASICGGSLSLMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 486

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T SG I  +Q   +    +++     LN A +    +++L
Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHEARQQILEL 545

Query: 234 QKDVISNE 241
             + IS  
Sbjct: 546 MNNTISKP 553



 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 84/231 (36%), Gaps = 33/231 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + ++   +S+ + G+ ++++GDT +L+TA       +    +     +       G  
Sbjct: 14  RTLKVSTGKISRQSSGAIVIQYGDTVILSTANRSKEARKGADFFPLTVDYVEKFYSTGKF 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR    +  I R+I R +R +       +  + I   V+  D    
Sbjct: 74  P---GGFNKRE---GRPSTNATLIARLIDRPIRPMFPEGF--NYDVHIVNTVLSYDEVNT 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
                I G+ +AL                     G VA ++ G   G  I++    E   
Sbjct: 126 PDYLGIIGSSLAL-------------MISDIPFLGPVAGVTVGYKNGEFILNPSPAELEE 172

Query: 185 IDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            ++D +   T    ++VE    A      ++     +  A D I  + + Q
Sbjct: 173 SELDLSVAGTKDAVNMVE----AGAKELDEETMLKAIMFAHDNIKKICEFQ 219


>gi|255030484|ref|ZP_05302435.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
           LO28]
          Length = 420

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ N++R +S    +     GS L   G T  L+  TL    E ++   +   ++
Sbjct: 198 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 257

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G    R A   R+ G       +  RAL+ V+         I +  
Sbjct: 258 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 313

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           +V++++G +  A+I G+ +A+ D                 +K  VA I+ G++       
Sbjct: 314 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 360

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S+      L  AK+    +++
Sbjct: 361 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQILDEALTQAKEGRLHILE 419



 Score = 42.0 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 16/120 (13%)

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
             D     AA+ G+ VAL                    +G +A +  G + G  +++   
Sbjct: 2   DQDCSPEMAAMLGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTI 48

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            +    D+      T    I  V+  A+    S++     +    + I  L + Q+ +I+
Sbjct: 49  EQAEKSDISLTVAGTYDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 105


>gi|255034850|ref|YP_003085471.1| polynucleotide phosphorylase/polyadenylase [Dyadobacter fermentans
           DSM 18053]
 gi|254947606|gb|ACT92306.1| Polyribonucleotide nucleotidyltransferase [Dyadobacter fermentans
           DSM 18053]
          Length = 713

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 84/235 (35%), Gaps = 28/235 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR  +Q+R I+        A GS L   G+T  LTT TL  K    I +T     + 
Sbjct: 321 RLDGRALDQVRPIASEVDFLPNAHGSALFTRGETQSLTTVTLGTKQDEQIVDTPLKYGYS 380

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     STG          R+ G       +  RAL+ V+         I I  D
Sbjct: 381 KFMLHYNFPGFSTGEVKPNRGPGRREVGHG----NLALRALKKVLPAEGDNPYTIRIVSD 436

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 437 ILESNGSSSMATVCAGSLALMDSGLK-------------IKAPVSGIAMGLISDEATGKY 483

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             + D+   ED   D+D     T  G I   Q   +    S +     L  AK  
Sbjct: 484 AVLSDILGDEDHLGDMDFKVTGTAEG-ITACQMDMKVNGLSFEVLTEALMQAKAG 537



 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 30/180 (16%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
             G      REI++      K A+GS +V+ G+T LL T      ++E +     +  + 
Sbjct: 13  PDG------REITIETGKLAKQADGSVVVRLGNTMLLATVVANKDIKEGLDFLPLSVDYQ 66

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
              A  G +P   G+  +RE   G+         R++ R LR +         Q+ I   
Sbjct: 67  EKFASAGRIP---GSFQRRE---GKLSDHEVLTSRLVDRVLRPLFPDDYHAEVQVNI--L 118

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +I AD             AL D L  +   +          G V+ +    + G  +++ 
Sbjct: 119 LISAD-----------AEALPDALAALAASAALAASDIPFGGPVSEVRVAKIDGEYVINP 167


>gi|315185936|gb|EFU19700.1| polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila
           DSM 6578]
          Length = 709

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 89/249 (35%), Gaps = 27/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR    +R I+    V     GS L   G+T  L   TL    +E++   +   K 
Sbjct: 311 IRTDGRGPEDIRPITCEVGVLPRTHGSALFTRGETQALAITTLGTVFDEQIMDDLEGDKR 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G  V R     R+ G       +  RAL +V+         + +  
Sbjct: 371 ENFMLHYNFPPFSVGE-VGRLYTGRREIGHGH----LAHRALEAVLPSKDDFPYTLRVVS 425

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++++++G +  A + G+ ++L +                 +K  VA I+ G++       
Sbjct: 426 EILESNGSSSMATVCGSTLSLLNAGV-------------PIKKPVAGIAMGLVTDGERTV 472

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T+ G I   Q   +            L  A+     ++ 
Sbjct: 473 ILSDILGEEDHFGDMDFKVAGTEEG-ITAFQMDIKIKNIDPATMRKALEQARRGRLHILG 531

Query: 233 LQKDVISNE 241
           +    IS  
Sbjct: 532 IMNQAISEP 540



 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 88/230 (38%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           RE+ LT     + A G+   ++G T +L TA     ++E +     +  +       G +
Sbjct: 12  RELVLTTGKMARQANGAVFAQYGGTCVLATACCGSDVKEDLDFIPLSVDYNEKYYAAGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +   + R+I R +R +   S    R+I I    + AD    
Sbjct: 72  P---GGFFKRE---GRPREKEILVSRLIDRPMRPLF--SKAFKREIQIIPTTVSAD---- 119

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                   +   D +  +   +          G V A+  G++ G  +++    +     
Sbjct: 120 -------QINTPDVVAIVAASAAVTVSDIPFDGPVGAVRVGLVDGTFVINPTLEQLEASA 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T  G I  V+G A+    S+D     + +A+  I  L K Q +
Sbjct: 173 LDIVVAGTLEG-ITMVEGGAKE--VSEDTLVEAIEIARGAIVSLCKAQLE 219


>gi|313680573|ref|YP_004058312.1| polyribonucleotide nucleotidyltransferase [Oceanithermus profundus
           DSM 14977]
 gi|313153288|gb|ADR37139.1| polyribonucleotide nucleotidyltransferase [Oceanithermus profundus
           DSM 14977]
          Length = 721

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 93/249 (37%), Gaps = 27/249 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           R  GR   ++R I +   V   + GS +   G+T +L T TL       I +     +  
Sbjct: 326 RADGRGPAEIRPIWIEVDVLPRSHGSAIFTRGETQVLGTVTLGTGRDEQIIDDLGLDESE 385

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +   VS R+ G       +  RAL+ ++         I +  D
Sbjct: 386 DFLVHYNFPPYSTGEVKRLRGVSRREVGHG----NLAKRALKPMLPEKDAFPYTIRVVGD 441

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           V++++G +  A +    +AL D                 +K  VA I+ G++    G P+
Sbjct: 442 VLESNGSSSMATVCAGCLALMDAGV-------------PIKKPVAGIAMGLVKPEEGEPV 488

Query: 175 V--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           V  D+   ED+  D+D     T  G +  +Q   +            L  A+     ++ 
Sbjct: 489 VLTDILGMEDALGDMDFKVTGTRDG-VTALQMDIKVQGLDAAVMRRALEQARAARLAILD 547

Query: 233 LQKDVISNE 241
             + V+   
Sbjct: 548 QMEQVLPEP 556



 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 90/230 (39%), Gaps = 26/230 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           RE+ +     ++ A GS  V++G+T ++ TA        +P      +        G +P
Sbjct: 21  RELVIETGKYARQASGSVWVRYGETIVMATAEGSKEPIDMPFLPLTVEFEERHYAIGKIP 80

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G+ ++RE   GR G ++    RM  R +R +         Q+I+   V+ AD     
Sbjct: 81  ---GSFMRRE---GRPGEKAILSARMTDRPIRPLFPKGFRHEVQVILT--VLAAD----- 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                      D L  +   +          G +A++  G + G  +++    +    D+
Sbjct: 128 ------QQNPPDVLGPLAASAALMLSDVPWDGPIASVRVGRVNGELVLNPTLQQLDESDL 181

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           D   V      I+ V+  A+    S+D     L+ A   +  LI LQ+++
Sbjct: 182 DL-IVAGSKDAIIMVEAGAKE--VSEDLLVEALDFAHREMQPLIALQEEM 228


>gi|307718799|ref|YP_003874331.1| polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila
           DSM 6192]
 gi|306532524|gb|ADN02058.1| polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila
           DSM 6192]
          Length = 709

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 89/249 (35%), Gaps = 27/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR    +R I+    V     GS L   G+T  L   TL    +E++   +   K 
Sbjct: 311 IRTDGRGPEDIRPITCEIGVLPRTHGSALFTRGETQALAITTLGTVFDEQIMDDLEGDKR 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G  V R     R+ G       +  RAL +V+         + +  
Sbjct: 371 ENFMLHYNFPPFSVGE-VGRLYTGRREIGHGH----LAHRALEAVLPSKDDFPYTLRVVS 425

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++++++G +  A + G+ ++L +                 +K  VA I+ G++       
Sbjct: 426 EILESNGSSSMATVCGSTLSLLNAGV-------------PIKKPVAGIAMGLVTDGERTV 472

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T+ G I   Q   +            L  A+     ++ 
Sbjct: 473 ILSDILGEEDHFGDMDFKVAGTEDG-ITAFQMDIKIKNIDPATMRKALEQARRGRLHILG 531

Query: 233 LQKDVISNE 241
           +    IS  
Sbjct: 532 IMNQAISEP 540



 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 88/230 (38%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           RE+ LT     + A G+   ++G T +L TA     ++E +     +  +       G +
Sbjct: 12  RELVLTTGKMARQANGAVFAQYGGTCVLATACCGSDVKEDLDFIPLSVDYNEKYYAAGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +   + R+I R +R +   S    R+I I    + AD    
Sbjct: 72  P---GGFFKRE---GRPREKEILVSRLIDRPMRPLF--SKAFKREIQIIPTTVSAD---- 119

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                   +   D +  +   +          G V A+  G++ G  +++    +     
Sbjct: 120 -------QINTPDVVAIVAASAAVTVSDIPFDGPVGAVRVGLVDGTFVINPTLEQLEASA 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T  G I  V+G A+    S+D     + +A+  I  L K Q +
Sbjct: 173 LDIVVAGTLEG-ITMVEGGAKE--VSEDTLVEAIEIARGAIVSLCKAQLE 219


>gi|94264886|ref|ZP_01288660.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
           MLMS-1]
 gi|93454656|gb|EAT04924.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
           MLMS-1]
          Length = 703

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 20/243 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+  R+ +++R I+          GS L   G+T +L +ATL    +E+    +      
Sbjct: 322 RIDNRRLDEVRPITSEVAALPRVHGSALFTRGETQVLVSATLGSGDDEQRIESLSGMNFK 381

Query: 58  WITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                Y   P   G  R  R         R      +  RA+++V+  +      I +  
Sbjct: 382 PFMLHYNFPPYCVGEVRFLRG-----PSRRDIGHGALAERAIQAVLPDADSFPYTIRVVS 436

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G +  A + GA ++L D    M+   +   +  + +G   AI         + D
Sbjct: 437 EVLESNGSSSMATVCGASLSLMDAGVPMKKAVSGIAMGLIKEGEEVAI---------LSD 487

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     TD G I  +Q   +    S++     LN AKD    +++  + 
Sbjct: 488 ILGDEDHLGDMDFKVAGTDEG-ITALQMDIKVEGVSREIMTQALNQAKDARLHILEKMQQ 546

Query: 237 VIS 239
            + 
Sbjct: 547 ALE 549



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 81/230 (35%), Gaps = 26/230 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R ++L    ++K A GS LV +G + +L              +     +T EY     + 
Sbjct: 12  RTLTLETGRLAKQASGSVLVTYGQSVVLV---TATAAREARASVDFLPLTIEYQERFYAV 68

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G    +  +RE   GR         R+I R LR +         Q+I        +    
Sbjct: 69  GRIPGSFFRREI--GRPTENETLACRIIDRPLRPLFAAGYQNETQVIATVLSADNENDPE 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                     G VA +  GM+ G  +++    +     
Sbjct: 127 LMAMIGASAAL-------------TVSHIPFNGPVAGVRVGMIDGEYVLNPPLDQRHNSR 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T    +V V+G A+     +D     +  A + +  LI LQ++
Sbjct: 174 LDLIVAGTSKA-VVMVEGGADG--LPEDEVREGIFFAHEAMQPLIDLQEE 220


>gi|193700001|ref|XP_001942946.1| PREDICTED: exosome complex exonuclease MTR3-like [Acyrthosiphon
           pisum]
          Length = 279

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 18/185 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +  R + +   +   A+GS  ++ G T L+ +    ++VP  +   K G + 
Sbjct: 40  VRCDGRDISAHRNLCIKTGIVTQAKGSAYLECGSTKLICSVFDPKEVPNKVEYAKTGELQ 99

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            E+     S   R +R           +++   + RAL   +      + +I I+  V++
Sbjct: 100 CEFKFATFSC--RQRRTYTR---DSEERQLCNELRRALEPAICRGEFANFEIHINVLVLE 154

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
            DG    AAIT A +AL D    M D              + A S G+     +VD  Y 
Sbjct: 155 NDGSVLAAAITAAGLALMDGCIPMYDV-------------IVATSLGIYKNKILVDPTYD 201

Query: 181 EDSTI 185
           E++  
Sbjct: 202 EETLC 206


>gi|34496921|ref|NP_901136.1| polynucleotide phosphorylase/polyadenylase [Chromobacterium
           violaceum ATCC 12472]
 gi|81656248|sp|Q7NY10|PNP_CHRVO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|34102777|gb|AAQ59141.1| polyribonucleotide nucleotidyltransferase [Chromobacterium
           violaceum ATCC 12472]
          Length = 722

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R IS+   V     GS L   G+T  L  ATL  K    I +   G  T 
Sbjct: 324 RIDGRDTRTVRPISIRNNVLPRTHGSALFTRGETQALVVATLGTKQDEQIIDALAGEYTE 383

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +      R+ G      R+  RAL +V+         + +  +
Sbjct: 384 RFMLHYNFPPYSTGEAGRMGPPKRREIGHG----RLAKRALVAVLPPEDEFGYSMRVVSE 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 440 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNRFAV---------LTDI 490

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T +G +  +Q   +    +++     L  AK+    ++ L K+ 
Sbjct: 491 LGDEDHLGDMDFKVAGTAAG-VTALQMDIKIQGITKEIMQVALEQAKEGRLHILGLMKEA 549

Query: 238 I 238
           +
Sbjct: 550 V 550



 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 33/197 (16%)

Query: 43  LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV 102
           ++     +     +   T   G +P   G   KRE   G+Q  +     R+I R +R + 
Sbjct: 58  VKPGQDFFPLTVDYLERTYAAGKIP---GGFFKRE---GKQSEKEVLTSRLIDRPIRPLF 111

Query: 103 DLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA 162
                   QI+     +  +  +   A+ GA  AL                     G + 
Sbjct: 112 PEGFYHDVQIVATVLSLNPEVDSDIPAMIGASAALA-------------ISGLPFAGPIG 158

Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERAT---------FSQ 213
           A   G   G  I++    E  T  +D     T    ++ V+  A+            F  
Sbjct: 159 AARVGYANGEYILNPTKTELQTSQMDLVVAGTSRA-VLMVESEAKELPEAVMLGAVVFGH 217

Query: 214 DHFFAMLNLAKDRIADL 230
           +   A    A   I +L
Sbjct: 218 EQMQA----AIKAINEL 230


>gi|94269020|ref|ZP_01291349.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
           MLMS-1]
 gi|93451373|gb|EAT02233.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
           MLMS-1]
          Length = 703

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 20/243 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+  R+ +++R I+          GS L   G+T +L +ATL    +E+    +      
Sbjct: 322 RIDNRRLDEVRPITSEVAALPRVHGSALFTRGETQVLVSATLGSGDDEQRIESLSGMNFK 381

Query: 58  WITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                Y   P   G  R  R         R      +  RA+++V+  +      I +  
Sbjct: 382 PFMLHYNFPPYCVGEVRFLRG-----PSRRDIGHGALAERAIQAVLPDADSFPYTIRVVS 436

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G +  A + GA ++L D    M+   +   +  + +G   AI         + D
Sbjct: 437 EVLESNGSSSMATVCGASLSLMDAGVPMKKAVSGIAMGLIKEGEEVAI---------LSD 487

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     TD G I  +Q   +    S++     LN AKD    +++  + 
Sbjct: 488 ILGDEDHLGDMDFKVAGTDEG-ITALQMDIKVEGVSREIMTQALNQAKDARLHILEKMQQ 546

Query: 237 VIS 239
            + 
Sbjct: 547 ALE 549



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 81/230 (35%), Gaps = 26/230 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R ++L    ++K A GS LV +G + +L              +     +T EY     + 
Sbjct: 12  RTLTLETGRLAKQASGSVLVTYGQSVVLV---TATAAREARASVDFLPLTIEYQERFYAV 68

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G    +  +RE   GR         R+I R LR +         Q+I        +    
Sbjct: 69  GRIPGSFFRREI--GRPTENETLACRIIDRPLRPLFAAGYQNETQVIATVLSADNENDPE 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                     G VA +  GM+ G  +++    +     
Sbjct: 127 LMAMIGASAAL-------------TVSHIPFNGPVAGVRVGMIDGEYVLNPPLDQRHNSR 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T    +V V+G A+     +D     +  A + +  LI LQ++
Sbjct: 174 LDLIVAGTSKA-VVMVEGGADG--LPEDEVREGIFFAHEAMQPLIDLQEE 220


>gi|188586076|ref|YP_001917621.1| Polyribonucleotide nucleotidyltransferase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|226702667|sp|B2A3A3|PNP_NATTJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|179350763|gb|ACB85033.1| Polyribonucleotide nucleotidyltransferase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 718

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 93/244 (38%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKHG 57
           R  GR + ++R ++    +     GS L   G T +L   T  A  + ++   +   +  
Sbjct: 322 RPDGRGQKEIRPVTCDVDLLPNTHGSGLFTRGQTQVLNVCTLGALGDVQILDGLDIEESK 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G       + G  G R      +  RAL+ ++         I +  +
Sbjct: 382 RYMHHYNFPPYSVGEAG---FMKG-PGRREIGHGALAERALKPMIPTEKDFPYTIRLVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V++++G T   ++  + ++L D    +E   +   +  + +G   AI         + D+
Sbjct: 438 VLESNGSTSMGSVCASSLSLMDAGVPIEKAVSGIAMGLIKEGDQLAI---------LSDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   + +  +++     L   KD    ++ + K  
Sbjct: 489 QGIEDFLGDMDFKVAGTEDG-ITALQMDIKISGTTREILKQALKQGKDGYLHILNIMKQT 547

Query: 238 ISNE 241
           IS  
Sbjct: 548 ISEP 551



 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 88/233 (37%), Gaps = 27/233 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
           +++L    ++K A G+  V++G+T +L TAT     ++ +  +     +       G +P
Sbjct: 13  QLTLETGELAKQANGAVKVQYGNTVVLVTATASKEPKDDLNFFPLTVDYEERLYAVGKIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   G+   ++    R+  R +R +          I+     +  +     
Sbjct: 73  ---GGFIKRE---GKPTEKATLTARLTDRPIRPLFPDGFRNPVHIVSTVLSVDQNCPPEI 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           A+I GA  AL                     G +A++  G +    +V  D  E     +
Sbjct: 127 ASIIGASAALS-------------ISDIPFDGPIASVKVGKVNDEIVVTPDVDEHEESQL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     T    I+ V+  AE     +D     +  A + I  +I +Q+ ++  
Sbjct: 174 DLVVAGTKDA-IMMVE--AEANELPEDEMLEAIMKAHEEIKKIITMQEQLVEQ 223


>gi|121593373|ref|YP_985269.1| polynucleotide phosphorylase/polyadenylase [Acidovorax sp. JS42]
 gi|187470958|sp|A1W4L8|PNP_ACISJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|120605453|gb|ABM41193.1| 3' exoribonuclease [Acidovorax sp. JS42]
          Length = 727

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 93/247 (37%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  +TL  +        +      
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFED 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +         I +  +
Sbjct: 377 RFIFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVACLPSKDEFPYTIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G  ++L D    M             K HVA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLIKEDNRFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     L  AK+    ++  
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538

Query: 234 QKDVISN 240
            ++ +  
Sbjct: 539 MQEAMGE 545



 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 76/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           + +    +++ A G+ LV   DT +L T       +     +     +   T   G +P 
Sbjct: 18  VVMETGEIARQASGAVLVNIDDTVVLATVVGSKQAKPGQDFFPLTVDYIEKTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  KREA   +         R+I R +R +          ++I    +  +     A
Sbjct: 77  --GSFFKREA---KPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTISLNPEVDADIA 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+     AL                     G + A   G + G  +++       +  +D
Sbjct: 132 AMIAVSAALSVSGI-------------PFNGPIGAARVGYVNGEYVLNPGQTARKSSQLD 178

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237
                T++  ++     +E    S++     +       K  I  + +L +D 
Sbjct: 179 LVVAGTEAAVLMV---ESEAQQLSEEIMLGAVVFGHEQGKVAINAIHELVRDA 228


>gi|295698477|ref|YP_003603132.1| polyribonucleotide nucleotidyltransferase [Candidatus Riesia
           pediculicola USDA]
 gi|291157180|gb|ADD79625.1| polyribonucleotide nucleotidyltransferase [Candidatus Riesia
           pediculicola USDA]
          Length = 705

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 57/249 (22%), Positives = 98/249 (39%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR+ N++R+I     V     GS L   G+T  L   TL  +    IR+   G   
Sbjct: 319 IRIDGRKLNEIRKIDCRVGVLSRTHGSSLFTRGETQTLVIVTLGNERDAQIRDEIVGEKL 378

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y  LP S G          R+ G       ++ R + +V+   +  S  I +  
Sbjct: 379 DHFILHYNFLPYSVGEIGLVGVPKRREIGHG----NLVKRGMIAVMPNFSNFSYTIRVVS 434

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +VI+++G +  A+  G  +A+ D                 +K  +A IS G++       
Sbjct: 435 EVIESNGSSSMASACGTSLAMMDAGI-------------PIKSAIAGISIGLIKEKENFV 481

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D   +  + G I  +Q   +      +     L  AK+    ++K
Sbjct: 482 ILSDILGDEDHFGDMDFKVMGNEEG-ISALQMDLKINGIEDEILRFALFQAKEARCKILK 540

Query: 233 LQKDVISNE 241
             K+ ISN 
Sbjct: 541 KMKNAISNP 549



 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 74/215 (34%), Gaps = 26/215 (12%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG--- 71
           +    +++ +  S ++  G T +L +    E+     + +    +   Y     S G   
Sbjct: 22  IETGSLARQSTSSLIIHMGGTSVLISVV--EQTEEKKQESNFFPLIVNYQERSYSIGRIP 79

Query: 72  -NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
            +  +RE   GR G       R+I R+LR           QII     +         +I
Sbjct: 80  GSFFRRE---GRSGENEILTSRLIDRSLRPAFPEQFRNEIQIIATVVSVNPKINPDILSI 136

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  AL                     G + ++  G + G  I++  Y +    ++D  
Sbjct: 137 IGASAALS-------------ISHIPFHGPIGSVRIGYIGGRYILNPSYEDLKESELDLI 183

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
              T+   I+ V+  A  +   +D     ++ +K 
Sbjct: 184 VSGTED-KILMVE--ARSSLLKEDIILEAIDFSKK 215


>gi|224141741|ref|XP_002324223.1| predicted protein [Populus trichocarpa]
 gi|222865657|gb|EEF02788.1| predicted protein [Populus trichocarpa]
          Length = 243

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 85/256 (33%), Gaps = 40/256 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R +S  R V   A GS     GDT +L      +       N +   I  
Sbjct: 5   RDDGRSPSQLRPLSCARNVLHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKACIEV 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            +                +G+ G   +E + ++ R L+S+  L+   +    I   V+  
Sbjct: 65  IWK-------------PKTGQIGKLEKEFEMILKRTLQSICILTLNPNTTTSIIVQVVND 111

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DG     AI  A  AL D    M+  +            VA   C    GY I+D    E
Sbjct: 112 DGALLVCAINAACAALVDAGIPMKHLA------------VAICCCLAEGGYVILDPTKLE 159

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAE---------------RATFSQDHFFAMLNLAKDR 226
           +  +      V  +S   V  +GS+                    S + +   L   +  
Sbjct: 160 EQKMRGFTYLVFPNSVVSVLPEGSSHVEGEPMEHGIITSVTHGVMSVEEYLKCLERGRAA 219

Query: 227 IADLIKLQKDVISNEV 242
              L    +  + +++
Sbjct: 220 STKLSDFLRRSLQSQL 235


>gi|222110082|ref|YP_002552346.1| polynucleotide phosphorylase/polyadenylase [Acidovorax ebreus TPSY]
 gi|254782718|sp|B9MEL0|PNP_DIAST RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|221729526|gb|ACM32346.1| polynucleotide phosphorylase, phosphorolytic RNA-binding
           [Acidovorax ebreus TPSY]
          Length = 727

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 93/247 (37%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  +TL  +        +      
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFED 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +         I +  +
Sbjct: 377 RFIFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVACLPSKDEFPYTIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G  ++L D    M             K HVA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLIKEDNRFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     L  AK+    ++  
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538

Query: 234 QKDVISN 240
            ++ +  
Sbjct: 539 MQEAMGE 545



 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 76/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           + +    +++ A G+ LV   DT +L T       +     +     +   T   G +P 
Sbjct: 18  VVMETGEIARQASGAVLVNIDDTVVLATVVGSKQAKPGQDFFPLTVDYIEKTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  KREA   +         R+I R +R +          ++I    +  +     A
Sbjct: 77  --GSFFKREA---KPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTISLNPEVDADIA 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+     AL                     G + A   G + G  +++       +  +D
Sbjct: 132 AMIAVSAALSVSGI-------------PFNGPIGAARVGYVNGEYVLNPGQTARKSSQLD 178

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237
                T++  ++     +E    S++     +       K  I  + +L +D 
Sbjct: 179 LVVAGTEAAVLMV---ESEAQQLSEEIMLGAVVFGHEQGKVAINAIHELVRDA 228


>gi|94969022|ref|YP_591070.1| polynucleotide phosphorylase/polyadenylase [Candidatus Koribacter
           versatilis Ellin345]
 gi|123381514|sp|Q1IQ54|PNP_ACIBL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|94551072|gb|ABF40996.1| 3' exoribonuclease [Candidatus Koribacter versatilis Ellin345]
          Length = 815

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 86/244 (35%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R  GR  +Q+R+I +   V     GS +   G+T  L T TL     M            
Sbjct: 318 RPDGRAFDQIRQIWIEVDVLPRTHGSAVFTRGETQALVTTTLGTGDDMQRMEGFEGEAKK 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G          R+ G       +  RAL +V+         + +  D
Sbjct: 378 RFMLHYNFPPFSVGEVAFLRGAGRREIGHG----ALAERALSAVLPSEDKWPYAMRVVSD 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +++++G +  A+I G  ++L D    ++       +  V +G   AI         + D+
Sbjct: 434 ILESNGSSSMASICGGSLSLMDAGVPLKAPVAGIAMGLVKEGDDYAI---------LTDI 484

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   +    +       L  A+     ++    +V
Sbjct: 485 AGAEDHYGDMDFKVAGTTQG-ITALQMDIKIGGITAQIMREALEQARRGRLFILDKMNEV 543

Query: 238 ISNE 241
           I + 
Sbjct: 544 IQSP 547



 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 78/225 (34%), Gaps = 27/225 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           +S       K A GS +V+ G + +L TA       E +  +     +   T   G  P 
Sbjct: 18  LSFETGKLAKQAHGSAIVRSGQSVVLATACANADPREGIDFFPLTVDYREYTYAGGRFP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR   +     R I R +R +         Q+I       ++      
Sbjct: 77  --GGFIKRE---GRPSEKEILTSRQIDRPIRPLFPEGFRCETQVIAMVLSADSENDPDVC 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            I GA  AL                     G + A+  G++ G  IV+  Y E     ++
Sbjct: 132 GINGASAALA-------------VSDIPFNGPIGAVRVGLIEGQNIVNPTYDEMRASKLN 178

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
              V T  G IV ++  A  A  +++   + +      I  +  +
Sbjct: 179 IMVVGTAEG-IVMIESGAHEA--TEEEVVSAIEFGHGEIKKICAV 220


>gi|328850748|gb|EGF99909.1| hypothetical protein MELLADRAFT_68249 [Melampsora larici-populina
           98AG31]
          Length = 271

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 93/258 (36%), Gaps = 46/258 (17%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA----EGSCLVKFGDTHLLTTATLEEKVP-----MWI 51
           +R   R+  ++R++     + K +    +GS +V  G T + ++ +  +++         
Sbjct: 12  LRQDNRRPYELRQLDFK--ILKSSPNSLDGSSIVSHGLTKVTSSVSGPKEITSSSSSNHK 69

Query: 52  RN-----TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA 106
            N        G I     M   S  +R K      +   R  ++   I     SV+ L  
Sbjct: 70  SNLKSHTNNVGSIQVYVNMTNFSQSDRKK----LSKVDKRLMDLSFSIQNTFESVIMLKL 125

Query: 107 LGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC 166
                I I  +V+Q DGG   AAI    ++L      ++D             ++ AIS 
Sbjct: 126 YPRSLIEIFIEVLQEDGGLLQAAINATSLSLIASGISIQD-------------YILAISI 172

Query: 167 GML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           G L     P++D+   E   +       +  S  I  +Q     +  + D F  +  +  
Sbjct: 173 GSLSNPNLPLLDVTNLEQLDLPSLTIASLPRSSKISLIQV---ESRLNIDEFEKLCRIGL 229

Query: 225 DRIADLIKLQKDVISNEV 242
           +          +V+ +E+
Sbjct: 230 EAC--------EVLKDEL 239


>gi|33519583|ref|NP_878415.1| polynucleotide phosphorylase/polyadenylase [Candidatus Blochmannia
           floridanus]
 gi|81666682|sp|Q7VQM0|PNP_BLOFL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33517246|emb|CAD83629.1| polynucleotide phosphorylase, member of mRNA degradosome
           [Candidatus Blochmannia floridanus]
          Length = 697

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           +R  GR  + +REI ++  +     GS L   GDT  L TATL  +        +   + 
Sbjct: 316 VRFDGRSPDMIREIDISAGILPRTHGSALFTRGDTQALVTATLGTERDAQNLDELTGDRV 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P  TG      A   R+ G      R+  R + +V+  S      + +  
Sbjct: 376 DRFLLHYNFPPYCTGEIGIVGAPRRREIGHG----RLAKRGMLAVMPNSNEFPYTVRVVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V +++G +  A+I GA +AL D                 +K  VA ++ G++       
Sbjct: 432 EVTESNGSSSMASICGASLALMDAGV-------------PIKESVAGVAMGLIKENSNFI 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I  +Q   +    + D        A+  +  ++ 
Sbjct: 479 ILSDIISDEDHIGDMDFKVSGTRTG-ITALQMDIKIKGITYDIIEVSFKKARCALLRILD 537

Query: 233 LQKDVIS 239
           +   VI 
Sbjct: 538 IMDQVIK 544



 Score = 65.1 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 79/226 (34%), Gaps = 30/226 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTA--TLEEKVP--MWIRNTKHGWITAEYGMLPRSTGNRVK 75
           +++ A  + +V  GDT +L T   + +EK+    +     +   T   G  P   G   +
Sbjct: 23  IARQANAAVMVSIGDTTVLVTVVSSNQEKIDQGFFPLVVHYQERTYAAGKFP---GGFFR 79

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE   GR         R+I R +R +     L   QII     +         A+ G   
Sbjct: 80  RE---GRPSESEILTSRLIDRPIRPLFPKGFLNDIQIIATVVSVNPQIHPDIVAMIGVSA 136

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
           AL                     G + A   G +    I++    E S   +D     TD
Sbjct: 137 ALS-------------LSDIPFFGPIGAARVGYIKDQYILNPTTIELSNSKLDLVVAGTD 183

Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
           S +I+ V+ +A     S+      +    ++    I ++ +L K  
Sbjct: 184 S-NILMVESAA--CVLSEQEMLNAIVFGHEQQQTVIQNINQLVKKA 226


>gi|62185343|ref|YP_220128.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila abortus
           S26/3]
 gi|81312506|sp|Q5L5B4|PNP_CHLAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|62148410|emb|CAH64177.1| polyribonucleotide nucleotidyltransferase [Chlamydophila abortus
           S26/3]
          Length = 694

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 88/243 (36%), Gaps = 18/243 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMW--IRNTKH 56
           +R  GR    +R IS+         GSCL   G+T  +   TL  E     +  +     
Sbjct: 313 LRSDGRSVTTIRPISIDTSFLPRTHGSCLFTRGETQTMAVCTLGSEAMAQRYEDLNGEGL 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +     G  G R     ++  +AL   +         I I+ 
Sbjct: 373 AKFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHTLPDPMKFPYTIRIES 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++ +++G +  A++ G  +AL D    ++       +  +L+     I         + D
Sbjct: 429 NITESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILEDDHVTI---------LSD 479

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D        G I   Q   +    + D   A L  AK+   D+++  K 
Sbjct: 480 ISGLEDHLGDMDFKVAGNTEG-ITAFQMDIKVEGITPDIMRAALAQAKEGRQDILETMKQ 538

Query: 237 VIS 239
            ++
Sbjct: 539 ALA 541



 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 80/227 (35%), Gaps = 30/227 (13%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHL---LTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
                +++ A G+ L +  +T +   +  A LEE V        +     ++  + ++ G
Sbjct: 18  FETGKIARQANGAVLARMQETWVFSSVCAANLEEAVDFLPLRVDYQE---KFSSIGKTLG 74

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAA 129
             +KRE   GR   R     R+I R++R  +    +   QI+        DG T     A
Sbjct: 75  GFIKRE---GRPTEREILTSRLIDRSMRPSLPNRLMQDIQILSYVW--SYDGVTLPDPIA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           I G   AL                       VA +  G +    +V+    E     ++ 
Sbjct: 130 ICGVSAALA-------------ISDIPQTSIVAGVRVGFVNNRWVVNPTKAEMDVSRMEL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
               T++  I+ ++G      F+++     +      I  + K  KD
Sbjct: 177 VLAGTENA-ILMIEG--HCDFFTEEQVIEAIEFGHKHIVTICKALKD 220


>gi|154148101|ref|YP_001405843.1| polynucleotide phosphorylase/polyadenylase [Campylobacter hominis
           ATCC BAA-381]
 gi|187610248|sp|A7I002|PNP_CAMHC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|153804110|gb|ABS51117.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Campylobacter
           hominis ATCC BAA-381]
          Length = 711

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 87/242 (35%), Gaps = 22/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R  GR  +++R IS+   +   A GSCL   G T  L   TL  +    + ++       
Sbjct: 323 RADGRALDEIRPISIETNILPNAHGSCLFTRGQTQALVVTTLGGETDAQVSDSLTSNTPI 382

Query: 58  --WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                 +Y       G     ++   R+ G       +  RAL   V L+    + I   
Sbjct: 383 SERFMFQYNFPGFCVGEASPLKSPGRRELGHG----NLAKRALTPSVPLN--NPQVIRTV 436

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A++ G  ++L               +  + +    AI         + 
Sbjct: 437 SEILESNGSSSMASVCGGSLSLRAAGVSTLKLVAGVAMGLIFEDDKHAI---------LT 487

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T  G I  +Q   +    S +     LN AKD    ++ L +
Sbjct: 488 DIMGLEDHDGDMDFKVAGTREG-ITALQMDIKLGGISLEILREALNQAKDGRNYILNLME 546

Query: 236 DV 237
             
Sbjct: 547 VA 548



 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 79/225 (35%), Gaps = 42/225 (18%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72
           V+K A G+CL+K  +T +L T   E              +T +Y       G +P   G 
Sbjct: 19  VAKQAAGACLMKVKNTVVLATVARENTQ----VEEDFLPLTVQYIEKQYAAGRIP---GG 71

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            +KRE    + G       R+I R+LR +         QI++   V+ AD     +   +
Sbjct: 72  YIKRET---KPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVF--VLSADPEIDLQVVGL 126

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
             A VAL+     M             K  V  +  G +    +++    E     +D  
Sbjct: 127 NAASVALYLSDIPM-------------KAPVCGVRVGYINDSFVINPTNSELQNSALDLY 173

Query: 191 FVMTDSGHI-VEV----QGSAERA---TFSQDHFFAMLNLAKDRI 227
                   + +E+      + E      FS+D     ++ A   I
Sbjct: 174 VAGVKDEMLMIEMRSLPNMNGENQNMNEFSEDKMVEAIDFASKAI 218


>gi|21672636|ref|NP_660703.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
           str. Sg (Schizaphis graminum)]
 gi|25090941|sp|Q8K9H5|PNP_BUCAP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|21623270|gb|AAM67914.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
           Sg (Schizaphis graminum)]
          Length = 707

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 94/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L + TL           +   K  
Sbjct: 315 RIDGREKDMIRALDIRTGVLPRTHGSSLFTRGETQSLVSVTLGTSRDAQNLDELLGDKTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R+L +V+         I I  +
Sbjct: 375 NFLFHYNFPPYSVGEIGIVGSPKRREIGHG----RLAKRSLLAVMPKLDDFPYTIRIVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA IS G++        
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKSAVAGISMGLVKEGDKYVL 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   +    + +     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVSGTEEG-ITALQMDIKIEGITNEIMRIALNKAKSARLHILNV 536

Query: 234 QKDVISNE 241
            K  +S  
Sbjct: 537 MKQALSKP 544



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 71/234 (30%), Gaps = 35/234 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPR 68
           I+L   +  + A  + +    DT +  T   E+        +     +   T   G +P 
Sbjct: 16  ITLETGIMARQATAAVMASMDDTAVFVTVVGEKTTNSSQKFFPLTVNYQERTYAVGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR         R+I R +R +         QII     +         
Sbjct: 75  --GGFFRRE---GRPSENEILTARLIDRPIRPLFPKGFCNEIQIIATVVSVNPQINPDII 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           +I GA  AL                     G + A   G +    +++    +  +  +D
Sbjct: 130 SIIGASAALSLSGI-------------PFYGPIGAARVGFVNNQYVLNPTIDDMKSSFLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                T +  ++     AE    S+D     +             Q+ V+ N +
Sbjct: 177 LVVSGTQNAVLMV---EAESKVLSEDKILGAIMFGHQ--------QQQVVINNI 219


>gi|228992535|ref|ZP_04152462.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides
           DSM 12442]
 gi|228998583|ref|ZP_04158170.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
           Rock3-17]
 gi|229006082|ref|ZP_04163770.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
           Rock1-4]
 gi|228755158|gb|EEM04515.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
           Rock1-4]
 gi|228761051|gb|EEM10010.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
           Rock3-17]
 gi|228767169|gb|EEM15805.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides
           DSM 12442]
          Length = 717

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEQDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   + A  S++     L  AK     ++ 
Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIAGLSREILEEALQQAKVGRMHILD 536

Query: 233 LQKDVISNE 241
                I+  
Sbjct: 537 HMLSAIAEP 545



 Score = 92.8 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTIETGQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  I++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDVPFEGPIAGATVGRIDGEFIINPTVEQQEKSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  L+  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EEIMLEAIMFGHDEIKRLVAFQEEIV 223


>gi|91789120|ref|YP_550072.1| polynucleotide phosphorylase/polyadenylase [Polaromonas sp. JS666]
 gi|123355467|sp|Q127W8|PNP_POLSJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|91698345|gb|ABE45174.1| Polyribonucleotide nucleotidyltransferase [Polaromonas sp. JS666]
          Length = 707

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 92/247 (37%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L   TL  +        +      
Sbjct: 317 RIDGRDTRTVRAIEIRNSVLPRTHGSALFTRGETQALVVTTLGTERDAQRIDALSGDYED 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL +V+         + +  +
Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIAVLPTKEEFPYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G  ++L D    M             K HVA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLIKEENRFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +  I  +Q   +    +++     L  AK+    ++  
Sbjct: 480 LTDILGDEDHLGDMDFKVAGT-TFGITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538

Query: 234 QKDVISN 240
            ++ +  
Sbjct: 539 MQEAMGE 545



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 77/234 (32%), Gaps = 31/234 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
           ++++    V++ A G+ +V    T +L T   +         +     +   T   G +P
Sbjct: 17  KVTMETGEVARQASGAVVVDMDGTVVLATVVAKTDAKPGQDFFPLTVDYLEKTYAAGRIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G+  KRE   GR         R+I R +R +         Q++I    +  +     
Sbjct: 77  ---GSFFKRE---GRPSEFETLTSRLIDRPIRPLFPEGFFNEVQVVIHVLSLNPEVEGDI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+  +  AL                     G + A     + G  +++    +     +
Sbjct: 131 PALIASSAALSISGI-------------PFNGPIGAARVAYVDGQYVLNPGKTQLKDSKM 177

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237
           D     T++  ++     +E    S++     +      A   I  + +L +D 
Sbjct: 178 DLVVAGTEAAVLMV---ESEAQQLSEEIMLGAVVFGHEQANIAINAIHELVRDA 228


>gi|260495072|ref|ZP_05815201.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_33]
 gi|260197515|gb|EEW95033.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_33]
          Length = 703

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 93/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
           R+ GR   ++R +     V     GS L   G+T  L   TL  K    + +      + 
Sbjct: 328 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 387

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RALR V+         I +  +
Sbjct: 388 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSE 443

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  ++L                   +K HVA I+ G++        
Sbjct: 444 ITESNGSSSQASICGGSLSLMAAGV-------------PIKEHVAGIAMGLIKEGEEFTV 490

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T SG I  +Q   +    +++     LN A     ++++L
Sbjct: 491 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHQARLEILEL 549

Query: 234 QKDVISNE 241
             + IS  
Sbjct: 550 MNNTISKP 557



 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 89/233 (38%), Gaps = 33/233 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + ++   +S+ + G+ ++++GDT LL+TA    +     +      +T +Y     ST
Sbjct: 18  RTLKVSTGKISRQSSGAIVIQYGDTVLLSTA---NRSKEARKGADFFPLTVDYIEKFYST 74

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           G       KRE   GR    +  + R+I R +R +       +  + I   V+  D    
Sbjct: 75  GKFPGGFNKRE---GRPSTNATLVARLIDRPIRPMFPDGF--NYDVHIVNTVLSYDEINT 129

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
                I G+ +AL                     G VA ++ G   G  I++    E   
Sbjct: 130 PDYLGIIGSSLAL-------------MISDIPFLGPVAGVTVGYKNGEFILNPSPKELEE 176

Query: 185 IDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            ++D +   T    ++VE    A      ++     +  A + I  + + Q++
Sbjct: 177 SELDLSVAGTKEAVNMVE----AGAKELDEETMLKAIMFAHENIKKICEFQEE 225


>gi|320537764|ref|ZP_08037687.1| polyribonucleotide nucleotidyltransferase [Treponema phagedenis
           F0421]
 gi|320145387|gb|EFW37080.1| polyribonucleotide nucleotidyltransferase [Treponema phagedenis
           F0421]
          Length = 700

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 90/245 (36%), Gaps = 19/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR   ++R I+    V     GS +   G+T  L   TL    +E+V   I   + 
Sbjct: 313 LRVDGRNTEEIRPITCEIGVLPRPHGSAVFTRGETQSLAVVTLGTVFDEQVYDDIEGDRR 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G  V R     R+ G       +  R+L  ++         + +  
Sbjct: 373 ENFILHYNFPPFSVGE-VGRMGTGRREIGHGY----LAHRSLSPMIPSREKFPYTVRVVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A + G  ++L      M+       +  +  G   AI         + D
Sbjct: 428 EILESNGSSSMATVCGGTLSLLHAGVPMKSPVAGIAMGLITDGDRYAI---------LSD 478

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T++G I   Q   + A  S +     L  AK     ++ +   
Sbjct: 479 ILGEEDHLGDMDFKVAGTENG-ITGFQMDIKIAGVSSEIMKNALAQAKRGRMHILGIMNQ 537

Query: 237 VISNE 241
            IS  
Sbjct: 538 TISKP 542



 Score = 75.5 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 77/219 (35%), Gaps = 26/219 (11%)

Query: 22  KYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHGWITAEYGMLPRSTGNRVKRE 77
           K A G+   +FG + +L T    ++    +        +       G +P   G  +KRE
Sbjct: 23  KQANGAIFAQFGGSAVLATVCASDQSQEGLDYVPLTVDYNEKYYAAGKIP---GGFIKRE 79

Query: 78  AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137
              GR   +   + R+I R +R +      G      D  +I          ++   +  
Sbjct: 80  ---GRPKDKEILVSRLIDRPMRPLF-EKDFGR-----DIQII-------PTCVSSDMINP 123

Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197
            D L  +   +          G VAA     + G  +++  + +    +++     T  G
Sbjct: 124 PDILAVIASSAAVVISDIPFNGPVAAARIAYVNGEYVINPTFKQIDRAEMEIVVAGTKEG 183

Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            I  V+G A     S++     L  A + I  +  LQ+ 
Sbjct: 184 -ITMVEGGAHE--VSEEVMLTALEKAHEFIKIICDLQEQ 219


>gi|154419828|ref|XP_001582930.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
           vaginalis G3]
 gi|121917168|gb|EAY21944.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
           vaginalis G3]
          Length = 241

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 77/243 (31%), Gaps = 30/243 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR  N+MR +           GS   K G T ++                    I 
Sbjct: 10  LRIDGRPPNEMRLVEAKIGTIPGCTGSSHFKIGQTEVIAQIFGPRD---NRSGDNAAEIR 66

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             +     +        A       R +E + ++ R     +        +I+I   VIQ
Sbjct: 67  VTFEYADFA----KVPHASDTSMTRRGRESEVIMKRTFEEAIKRELFPHSKILIAITVIQ 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
            DG  ++AAI  A +AL D    M D              V +++  +      +D    
Sbjct: 123 DDGSCQSAAINAATLALIDAGIPMFD-------------FVVSMTVALYDDKCFLDAGRA 169

Query: 181 EDSTIDVDANF----VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           E    +         +   +  I+ +  +A            ++  A D   +L  + +D
Sbjct: 170 E---SNARFPVLEVSIFPSTSEILSMNLTARIEP---QASKNLMAAAIDGCKELHAIMQD 223

Query: 237 VIS 239
           V+ 
Sbjct: 224 VVR 226


>gi|300676790|gb|ADK26666.1| polyribonucleotide nucleotidyltransferase 1 [Zonotrichia
           albicollis]
 gi|300676888|gb|ADK26760.1| polyribonucleotide nucleotidyltransferase 1 [Zonotrichia
           albicollis]
          Length = 765

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 92/249 (36%), Gaps = 19/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA---TLEEKVPM-----WIRN 53
           R  GR    +R+I     + K   GS L + G T +L T    +LE  V        +  
Sbjct: 340 RCDGRDLTSLRDIKCEVNMFKMLHGSALFQRGQTQVLCTVTFDSLESSVKSDVISTAVSG 399

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   ++ R+ G       +  RAL+ V+         I 
Sbjct: 400 IKDKNFMLHYEFPPYATNEIGKVTVMNRRELGHG----ALAERALKPVIPQDF--PFTIR 453

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    + +      +  V K    +   G +  Y 
Sbjct: 454 VTSEVLESNGSSSMASACGGSLALMDAGVPVSNAVAGVAIGLVTK---CSQGKGDIEDYR 510

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T+ G I  +Q   +            +  A     ++++
Sbjct: 511 LLTDILGIEDYYGDMDFKMAGTNKG-ITALQVDLKLPGIPIKIVVEAIQQATAAKREILQ 569

Query: 233 LQKDVISNE 241
           +    ++  
Sbjct: 570 IMNQTLAKP 578



 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 90/241 (37%), Gaps = 36/241 (14%)

Query: 5   GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTT-ATLEEKVPMWIRNTKHGWITAE 62
            R     R++ L+     K+A+GS +V+ GDT ++ T  +  +  P          +  +
Sbjct: 29  NRFFLSFRKMELSSGKLAKFADGSAVVQLGDTAVMVTAVSKTKPSPSQFMP-----LVVD 83

Query: 63  YGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           Y     + G R+    +    G   +EI   R+I R++R +         QI+  C+++ 
Sbjct: 84  YRQKAAAAG-RIPTNYLRRELGSTDKEILTSRVIDRSIRPLFPAGYFYDTQIL--CNLLA 140

Query: 121 ADG--GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
            DG       AI GA  AL                     G + A+  G++ G  +++  
Sbjct: 141 VDGVNDPDILAINGASAALA-------------LSDIPWNGPIGAVRVGLVDGETVINPT 187

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD-------RIADLI 231
             E ++  ++          +V ++ +AE     Q  F   + +           I  L+
Sbjct: 188 RKEMASSTLNLVVAGAAQNQVVMLEATAENIL--QQDFCHAIKVGVKQTQHIIQGIQQLV 245

Query: 232 K 232
           K
Sbjct: 246 K 246


>gi|225181391|ref|ZP_03734835.1| Polyribonucleotide nucleotidyltransferase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167972|gb|EEG76779.1| Polyribonucleotide nucleotidyltransferase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 721

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 91/245 (37%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPM--WIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T +L   T     +V     +   + 
Sbjct: 310 LRPDGRKSDEIRPVTSEVGILPRTHGSGLFTRGQTQVLNVCTLGAPGEVQRLDGLGLEES 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G        S R  G       +  +AL  V+         I +  
Sbjct: 370 KRYMHHYNFPPYSVGEAGFMRGASRRDIGHG----ALAEKALVPVLPSEEDFPYTIRLVS 425

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G +   ++ G+ +++ D    ++   +   +  +++G   AI         + D
Sbjct: 426 EVVESNGSSSMGSVCGSTLSMMDAGVPLKKPVSGVAMGLIVEGDDVAI---------LSD 476

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I  +Q   +    S++     L  AKD    ++    +
Sbjct: 477 IQGMEDFLGDMDFKVAGTPEG-ITALQMDIKIKGLSREILTKALQQAKDGYMHIMNKMTE 535

Query: 237 VISNE 241
           VI   
Sbjct: 536 VIPEP 540



 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 93/234 (39%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           RE+S+    ++K A GS ++++GDT +L+TAT      E V  +     +       G +
Sbjct: 11  RELSIETGRIAKQASGSVVLRYGDTVVLSTATASAEPREGVDFFPMTVDYEERLYAVGKI 70

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   ++    R+  R  R +       +  I+     +  D    
Sbjct: 71  P---GGFIKRE---GRPTEKAILSARLTDRPCRPLFPKGFRNAVHIVTTVLSVDQDNPPE 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             +I GA  AL                +    G ++A+  G + G P+++ +  +     
Sbjct: 125 VLSIVGASAALS-------------ISNIPFAGPLSAVVVGWIDGKPVINPNQEQAEQSK 171

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T  G I+ V+  A     ++D     +    D   +++ LQ+ +++ 
Sbjct: 172 LHLVVASTKDG-IMMVEAGAHE--LTEDEVLEAIMAGDDANKEIVALQEQMVAE 222


>gi|237743308|ref|ZP_04573789.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 7_1]
 gi|229433087|gb|EEO43299.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 7_1]
          Length = 703

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 93/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
           R+ GR   ++R +     V     GS L   G+T  L   TL  K    + +      + 
Sbjct: 328 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 387

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RALR V+         I +  +
Sbjct: 388 KFYLHYNFPPYSVGEVGRMSSPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSE 443

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  ++L                   +K HVA I+ G++        
Sbjct: 444 ITESNGSSSQASICGGSLSLMAAGV-------------PIKEHVAGIAMGLIKEGEEFTV 490

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T SG I  +Q   +    +++     LN A     ++++L
Sbjct: 491 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHQARLEILEL 549

Query: 234 QKDVISNE 241
             + IS  
Sbjct: 550 MNNTISKP 557



 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 89/233 (38%), Gaps = 33/233 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + ++   +S+ + G+ ++++GDT LL+TA    +     +      +T +Y     ST
Sbjct: 18  RTLKVSTGKISRQSSGAIVIQYGDTVLLSTA---NRSKDARKGADFFPLTVDYIEKFYST 74

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           G       KRE   GR    +  + R+I R +R +       +  + I   V+  D    
Sbjct: 75  GKFPGGFNKRE---GRPSTNATLVARLIDRPIRPMFPDGF--NYDVHIVNTVLSYDEINT 129

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
                I G+ +AL                     G VA ++ G   G  I++    E   
Sbjct: 130 PDYLGIIGSSLAL-------------MISDIPFLGPVAGVTVGYKNGEFILNPSPKELEE 176

Query: 185 IDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            ++D +   T    ++VE    A      ++     +  A + I  + + Q++
Sbjct: 177 SELDLSVAGTKEAVNMVE----AGAKELDEETMLKAIMFAHENIKKICEFQEE 225


>gi|302667165|ref|XP_003025173.1| hypothetical protein TRV_00655 [Trichophyton verrucosum HKI 0517]
 gi|291189263|gb|EFE44562.1| hypothetical protein TRV_00655 [Trichophyton verrucosum HKI 0517]
          Length = 302

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 73/208 (35%), Gaps = 13/208 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWI 59
           +RL GR+ N++R +      +  + GS  +  G+T +L T     +             I
Sbjct: 14  LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGR--SQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                +   +  +R K+ A     G R  + E+  ++  A +  +         I +   
Sbjct: 74  NVVVNLAGFANVDRKKKSATGSGGGDRQATTELATLLRDAFQPHIHAHLYPRSTISVHVS 133

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS-----CGMLCG- 171
           V+ +DG    A +    +AL D    M        +    +    A++      G +   
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGRASTPAVTAESAQIGEINES 193

Query: 172 -YPIVDLDYGED---STIDVDANFVMTD 195
             P++D+   E+     + V     M D
Sbjct: 194 LDPLLDISAPEEVELPYMTVANTNPMPD 221


>gi|203288233|ref|YP_002223248.1| polyribonucleotide nucleotidyltransferase [Borrelia recurrentis A1]
 gi|226702624|sp|B5RQE3|PNP_BORRA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|201085453|gb|ACH95027.1| polyribonucleotide nucleotidyltransferase [Borrelia recurrentis A1]
          Length = 717

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 27/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR   Q+R+I     + K   GS L   G+T  L       +++E+V   I   K 
Sbjct: 315 LRTDGRTPTQIRDIIAEVDLLKRTHGSALFTRGETQALAVTTLGTSIDEQVMDDIDGDKR 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G    R     R+ G       +  R+L +++         I +  
Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRSLEAMLPKKDDFPYTIRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A +    ++L                   +K  VA I+ G++       
Sbjct: 430 EVLESNGSSSMATVCSGSMSLMAAGV-------------PVKEQVAGIAMGLISNDDKYV 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I   Q   + +  ++      L  A+     ++ 
Sbjct: 477 ILSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKISNVTKQLMRDALEQARIGRMHILS 535

Query: 233 LQKDVISN 240
           +   VIS+
Sbjct: 536 IMDSVISS 543



 Score = 78.6 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 84/230 (36%), Gaps = 31/230 (13%)

Query: 16  LTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           L   +  K A G+ L  +G + +L T     ++ E +     + ++       G +P   
Sbjct: 16  LETGLLAKQANGAVLATYGGSTVLATVCCSDSIRENLDFVPLSVEYNEKYYAAGKIP--- 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTRTA 128
           G  +KRE   G+   +   + R+I R +R + D      R+I +    +  D        
Sbjct: 73  GGFIKRE---GKPKDKEVLVSRLIDRPMRPLFD--KRFGREIQVVPTTLSTDQMNPPDIV 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            +  A+ A+             F       G +AA+    L    IV+  + E     +D
Sbjct: 128 GMNAAFTAV-------------FLSDIPFNGPIAAVRIAYLNDEFIVNPSFDEIQDSVLD 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
              V      I  V+G A     S++     ++ A   I  +  LQK+ I
Sbjct: 175 I-VVAGSLDGITMVEGGANE--VSEEILLDAIDKAYTYIKQICDLQKEFI 221


>gi|152976173|ref|YP_001375690.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|187470935|sp|A7GRD7|PNP_BACCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|152024925|gb|ABS22695.1| Polyribonucleotide nucleotidyltransferase [Bacillus cytotoxicus NVH
           391-98]
          Length = 710

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKSDEIRPLASEVGILPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSREILEEALQQAKVGRMHILD 536

Query: 233 LQKDVISNE 241
               VI+  
Sbjct: 537 HMLSVIAEP 545



 Score = 92.5 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTIETGQLAKQANGAVLVRYGDTAVLSTATASKEAKDVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  I++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRIDGEFIINPTVEQQEKSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    + I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHEEIKRLIAFQEEIV 223


>gi|76155868|gb|AAX27138.2| SJCHGC06185 protein [Schistosoma japonicum]
          Length = 251

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 71/202 (35%), Gaps = 18/202 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-KVPMWIRNTKHGWIT 60
           R+ GR+ N++R +      S  ++G   +  G+T ++ +             N     I 
Sbjct: 3   RVDGRRPNELRRVHCQFG-SGNSDGIVFLHQGNTKVIASVVGPHAPRTKGDGNPDGATII 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            ++   P ++ +  +R+  S      + +    I      VV        QI I  +VIQ
Sbjct: 62  CQFTKPPFASTSGERRKVASN--DRSANDFSTAIEEIFSCVVRTEKYPMSQIDIFLEVIQ 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD-Y 179
           +DG     A+    +AL D    M                V+A + G+       DL  +
Sbjct: 120 SDGSEFACAVNATTLALTDAGIEMHYL-------------VSAATVGLWGSRVFADLCRF 166

Query: 180 GEDSTIDVDANFVMTDSGHIVE 201
            E+  +       + D   + E
Sbjct: 167 EENPRLSQLTVVCLPDIHQLSE 188


>gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040461|gb|ACT57257.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 699

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 97/248 (39%), Gaps = 26/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           +R+ GR    +R+IS    + +   GS L   GDT  +   TL  +        +  T+ 
Sbjct: 312 VRMDGRDSETVRDISAQVGLLQRTHGSSLFIRGDTQAIVVVTLGTREDEQYVDSLSGTQR 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y  LP +TG   +  A S R+ G      R+  RA+  V+  +A     + I  
Sbjct: 372 NDFMMHYNFLPCATGEVSRMGAPSRREIGHG----RLARRAIHPVLPQTAQFPYTLRIVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++ ++DG +  A + G+ +AL D                 +   VA I+ G++       
Sbjct: 428 EITESDGSSSMATVCGSSLALMDAGV-------------PISKPVAGIAMGLVKDGDDFI 474

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED    +D     TDSG I  +Q   +    S++     L  AK     ++ 
Sbjct: 475 ILSDISGDEDHLGHMDFKVAGTDSG-ITAMQMDMKIGGISENIMVMALQQAKRGRLHILN 533

Query: 233 LQKDVISN 240
               V+S 
Sbjct: 534 EMSKVLSE 541



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 34/230 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ ++G+ L  +G+T +L T     +L++    +     +   T   G +
Sbjct: 14  RPLKLETGRIARQSDGAVLATYGETVVLATVVYDRSLKDGQDFFPLTVNYQERTYAVGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G  ++RE+   R       I RMI R++R +         Q+II+  V+Q D    
Sbjct: 74  P---GGYLRRES---RPTENEILISRMIDRSIRPLFSKCYKNETQVIIN--VMQHDLESS 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++  A  AL                    +G V       + G  +++    ED  
Sbjct: 126 PHVVSMVAASAAL-------------MLSGLPFEGPVVGAQVDYINGQYVLNPRLDEDQ- 171

Query: 185 IDVDANFVMTDSGHI-VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
             +D     T    + VE+    E    S+D     +    +    +I+ 
Sbjct: 172 GSLDLFVSGTQDAVLMVEL----EANQLSEDVVLDAIIFGHNECKPVIEA 217


>gi|312143658|ref|YP_003995104.1| polyribonucleotide nucleotidyltransferase [Halanaerobium sp.
           'sapolanicus']
 gi|311904309|gb|ADQ14750.1| polyribonucleotide nucleotidyltransferase [Halanaerobium sp.
           'sapolanicus']
          Length = 696

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 99/249 (39%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R I     V   + GS +   G+T  L+     A+ +E++   +   + 
Sbjct: 310 IRPDGREHDEIRPIWAEVGVVPRSHGSGVFTRGETQALSVLTLGASSDEQILFGLGEKET 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y       G      +   R+ G       +  +AL  V+         I I  
Sbjct: 370 KRYMHHYNFPSFCVGETSPMRSPGRREIGHGT----LGEKALLPVIPEKDDFPYTIRIVS 425

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGYPI 174
           +V++++G +  A+I G+ ++L D                 +K  V+ I+ G++      +
Sbjct: 426 EVLESNGSSSQASICGSTLSLMDAGV-------------PIKAPVSGIAMGLMKKDDEIV 472

Query: 175 V--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           V  D+   ED   D+D     T++G +  +Q   +    S+D     LN AK     +++
Sbjct: 473 VLSDIQGFEDFHGDMDFKVAGTENG-VTALQMDMKLKGLSKDVLEEALNKAKKGRMHIME 531

Query: 233 LQKDVISNE 241
              +VI+  
Sbjct: 532 KMLEVIAEP 540



 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 86/228 (37%), Gaps = 28/228 (12%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           +  +      K A GS +V+ GD+ +L TAT++E  P       +  +   Y     + G
Sbjct: 12  DFHIETGKLAKQANGSVMVRSGDSQVLVTATMDEPRP----GMNYFPLMVNYEERVYAIG 67

Query: 72  NRV----KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
                  +RE   GR    +    R+I R++R +         Q++     +  D     
Sbjct: 68  KIPGGVLRRE---GRPRDEATLAARVIDRSIRPLFPDGYRKDVQVVATILSVDDDHDPEM 124

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA +AL                     G +  +  G++ G  I++ +  E    ++
Sbjct: 125 LALNGASIAL-------------TISDIPFDGPIGGVKVGLVDGEIIINPNEEERENSEL 171

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D   V      I+ V+ SA      +      ++LA   I  +IK+QK
Sbjct: 172 DL-VVAGSKDAIMMVEASANE--VEEAVILEAMDLAHQEIQKMIKIQK 216


>gi|217976462|ref|YP_002360609.1| Polyribonucleotide nucleotidyltransferase [Methylocella silvestris
           BL2]
 gi|254782729|sp|B8EP09|PNP_METSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|217501838|gb|ACK49247.1| Polyribonucleotide nucleotidyltransferase [Methylocella silvestris
           BL2]
          Length = 714

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 94/242 (38%), Gaps = 18/242 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           +R+ GR    +R I     +   A GS L   G+T  L  ATL         ++  G   
Sbjct: 315 VRIDGRDLKTVRPILAEVGILPRAHGSALFTRGETQALVVATLGTGEDEQFVDSLEGTYK 374

Query: 58  -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R     ++  RA+R ++  +A     I I  
Sbjct: 375 ERFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAVRPMLPTAAEFPYTIRIVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++ +++G +  A + G+ +AL D    ++  +    +  +L+G   A+         + D
Sbjct: 431 EITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGERFAV---------LSD 481

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T+ G +  +Q   + A  +++     L+ AK     ++     
Sbjct: 482 ILGDEDHLGDMDFKVAGTEEG-VTSLQMDIKVAGITEEIMKVALDQAKGGRLHILGEMSK 540

Query: 237 VI 238
            +
Sbjct: 541 AL 542



 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 76/235 (32%), Gaps = 31/235 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R+++L    +++ A+G+ L  +G+T +L T     T +  +  +     +       G +
Sbjct: 14  RKLTLETGRIARQADGAVLATYGETTVLATVVSARTPKPGIDFFPLTVNYQEKAFAAGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +   + R+I R +R +         Q+++       +    
Sbjct: 74  P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFPEGYRNDTQVVVTVLSHDLENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+     AL                     G V     G + G   ++    E     
Sbjct: 128 ILALVATSAALTISGI-------------PFMGPVGGARVGYINGALKLNPTVDELKESA 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
           +D     T    ++     +E    S+      +          I  +I+L +  
Sbjct: 175 LDLVVAGTGDAVLMV---ESEAKELSETLMLEAVMTGHRGFQPVIDAIIRLAEKA 226


>gi|203284701|ref|YP_002222441.1| polyribonucleotide nucleotidyltransferase [Borrelia duttonii Ly]
 gi|226702622|sp|B5RMZ9|PNP_BORDL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|201084144|gb|ACH93735.1| polyribonucleotide nucleotidyltransferase [Borrelia duttonii Ly]
          Length = 717

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 27/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR   Q+R+I     + K   GS L   G+T  L       +++E+V   I   K 
Sbjct: 315 LRTDGRTPTQIRDIIAEVDLLKRTHGSALFTRGETQALAVTTLGTSIDEQVMDDIDGDKR 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G    R     R+ G       +  R+L +++         I +  
Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRSLEAMLPKKDDFPYTIRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A +    ++L                   +K  VA I+ G++       
Sbjct: 430 EVLESNGSSSMATVCSGSMSLMAAGV-------------PVKEQVAGIAMGLISNDDKYV 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I   Q   + +  ++      L  A+     ++ 
Sbjct: 477 ILSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKISNVTKQLMRDALEQARIGRMHILS 535

Query: 233 LQKDVISN 240
           +   VIS+
Sbjct: 536 IMDSVISS 543



 Score = 79.0 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 84/230 (36%), Gaps = 31/230 (13%)

Query: 16  LTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           L   +  K A G+ L  +G + +L T     ++ E +     + ++       G +P   
Sbjct: 16  LETGLLAKQANGAVLATYGGSTVLATVCCSDSIRENLDFVPLSVEYNEKYYAAGKIP--- 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTRTA 128
           G  +KRE   G+   +   + R+I R +R + D      R+I +    +  D        
Sbjct: 73  GGFIKRE---GKPKDKEVLVSRLIDRPMRPLFD--KRFGREIQVVPTTLSTDQMNPPDIV 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            +  A+ A+             F       G +AA+    L    IV+  + E     +D
Sbjct: 128 GMNAAFTAV-------------FLSDIPFNGPIAAVRIAYLNDEFIVNPSFDEIQDSVLD 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
              V      I  V+G A     S++     ++ A   I  +  LQK+ I
Sbjct: 175 I-VVAGSLDGITMVEGGANE--VSEEILLDAIDKAYAYIKQICDLQKEFI 221


>gi|289550934|ref|YP_003471838.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180466|gb|ADC87711.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus
           lugdunensis HKU09-01]
          Length = 698

 Score =  114 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 90/235 (38%), Gaps = 28/235 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +   A GS L   G T  L+     A  + ++   +   + 
Sbjct: 318 IRPDGRKPDEIRLLESEVGILPRAHGSGLFTRGQTQALSVLTLGALGDYQIIDGLGPEQE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIID 115
                 Y     S G      A   R+ G       +  RALR ++ D S      I I 
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALRHIIPDTSKFP-YTIRIV 432

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            +V++++G +  A+I G+ +AL D                 +K  VA I+ G++      
Sbjct: 433 SEVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSY 479

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             + D+   ED+  D+D     T  G I  +Q   +    +++     L  A+  
Sbjct: 480 TILTDIQGMEDALGDMDFKVAGTKDG-ITAIQMDIKIDGLTREVIEEALEQARKG 533



 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 28/232 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ LV++GDT +L+TA           +     +       G +P
Sbjct: 15  RSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDGDFFPLTVNYEEKMYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR G  +    R+I R +R +         QI+        D     
Sbjct: 75  ---GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYKHDVQIMNIVLSADPDCSPEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  +++    +     +
Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYVDGKYVINPTLEQKEQSRL 175

Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D       D+ ++VE    A  +  ++      +    D I  L++ Q+ ++
Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITEQEMLEAIFFGHDEIKRLVEFQQQIV 223


>gi|269797830|ref|YP_003311730.1| 3' exoribonuclease [Veillonella parvula DSM 2008]
 gi|269094459|gb|ACZ24450.1| 3' exoribonuclease [Veillonella parvula DSM 2008]
          Length = 689

 Score =  114 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 93/250 (37%), Gaps = 28/250 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRN----TK 55
           +R  GRQ +++R IS    V     GS L   G T +L   T+        I      T+
Sbjct: 309 IRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVITVAPLSEKQTIDGLGVETE 368

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I   Y     S G          R+ G       +  RAL  V+         + + 
Sbjct: 369 KRYIH-HYNFPSFSVGETRSSRGPGRREIGHG----ALAERALVPVIPSEEDFPYALRLV 423

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V++++G +  A++ G+ ++L D                 +K  VA I+ G++      
Sbjct: 424 SEVLESNGSSSMASVCGSTLSLMDAGV-------------PIKAPVAGIAMGLVTQGEHY 470

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED+  D+D     T  G +  +Q   + +  S++     L  A      ++
Sbjct: 471 TILTDIQGMEDALGDMDFKVAGTAKG-VTAIQMDIKISGLSREILQEALEQAHKGRMHIM 529

Query: 232 KLQKDVISNE 241
            +  D I+  
Sbjct: 530 GIMLDTIAEP 539



 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 90/234 (38%), Gaps = 28/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ +V +GDT +L TAT  ++   +  +     +       G LP
Sbjct: 11  RTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVDYEEKMYAVGRLP 70

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KREA   R    +    R+I R +R + +        ++     +  D     
Sbjct: 71  ---GGFIKREA---RPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDCDPAI 124

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
             + GA  AL                     G +A +  G + G  +V+         + 
Sbjct: 125 CGMIGASAALS-------------ISDVPWNGPIAGVRMGRINGEFVVNPTKA--QLEET 169

Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D N V+      I+ V+G AE     +D    ++  A + I  ++  Q+D+ + 
Sbjct: 170 DLNIVVAGTKDAILMVEGGAEEVP--EDIILEVIMAAHEEIKKIVAFQEDMTAK 221


>gi|314936565|ref|ZP_07843912.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
           subsp. hominis C80]
 gi|313655184|gb|EFS18929.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
           subsp. hominis C80]
          Length = 698

 Score =  114 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 88/234 (37%), Gaps = 26/234 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +   A GS L   G T  L+     A  + ++   +     
Sbjct: 318 IRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEIE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RALR ++  +      I I  
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALRYIIPDTTEFPYTIRIVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G +  A+I G+ +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED+  D+D     T  G I  +Q   +    +++     L  A+  
Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREVIEEALEQARQG 533



 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 89/233 (38%), Gaps = 28/233 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ LV++GDT +L+TA           +     +       G +P
Sbjct: 15  RSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDGDFFPLTVNYEEKMYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR G  +    R+I R +R +         QI+        D     
Sbjct: 75  ---GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNTVLSADPDCSPEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  +++    +     +
Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGTYVINPTLEQKEVSRL 175

Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D       D+ ++VE    A  +  ++      +    + I  L+  Q++V+ 
Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITEQEMLEAIFFGHEEIKRLVAFQEEVVE 224


>gi|228475082|ref|ZP_04059810.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
           SK119]
 gi|228271067|gb|EEK12455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
           SK119]
          Length = 698

 Score =  114 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 88/234 (37%), Gaps = 26/234 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +   A GS L   G T  L+     A  + ++   +     
Sbjct: 318 IRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEIE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RALR ++  +      I I  
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALRYIIPDTTEFPYTIRIVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G +  A+I G+ +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED+  D+D     T  G I  +Q   +    +++     L  A+  
Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREVIEEALEQARQG 533



 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 89/233 (38%), Gaps = 28/233 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ LV++GDT +L+TA           +     +       G +P
Sbjct: 15  RSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDGDFFPLTVNYEEKMYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR G  +    R+I R +R +         QI+        D     
Sbjct: 75  ---GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNTVLSADPDCSPEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  +++    +     +
Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGTYVINPTLEQKEVSRL 175

Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D       D+ ++VE    A  +  ++      +    + I  L+  Q++V+ 
Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITEQEMLEAIFFGHEEIKRLVAFQEEVVE 224


>gi|323142160|ref|ZP_08076997.1| polyribonucleotide nucleotidyltransferase [Phascolarctobacterium
           sp. YIT 12067]
 gi|322413352|gb|EFY04234.1| polyribonucleotide nucleotidyltransferase [Phascolarctobacterium
           sp. YIT 12067]
          Length = 690

 Score =  114 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 94/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH---LLTTATLEEKVPM-WIRNTKH 56
           +R  GRQ +++R +S    +     GS L   G T    +L  A L E   +  +   + 
Sbjct: 305 IRPDGRQLDEVRPVSCEVGLLARPHGSSLFTRGQTQILNVLALAPLREAQILDGLGAEET 364

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      +   R+ G       +  RALR V+         I +  
Sbjct: 365 KRYIHHYNFPPYSVGETKPLRSPGRREIGHG----ALAERALRPVIPSEEDFPYAIRLVS 420

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +   ++  + ++L D                 +K  VA ++ G++       
Sbjct: 421 EVLESNGSSSMGSVCASTLSLMDAGV-------------PIKAPVAGVAMGLVKDGEYFT 467

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T+ G I  +Q   +    ++D F   L  AK     ++ 
Sbjct: 468 ILTDIQGLEDALGDMDFKVAGTEKG-ITAIQMDIKIDGINKDIFTQALAQAKRGREFIMG 526

Query: 233 LQKDVISNE 241
              + IS  
Sbjct: 527 KMMECISEP 535



 Score = 95.2 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 87/234 (37%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R +++    ++K A G+ LV++GDT ++   T      E V  +             G +
Sbjct: 6   RTLTIEAGKIAKQANGAVLVRYGDTAVVVAVTGTKTPREGVDFFPLTVDFEEKMYAVGKI 65

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   ++    R+I R +R +         QI+     +  D    
Sbjct: 66  P---GGFIKRE---GRPSEQAILTSRLIDRPIRPMFPEGYHNDVQIVATAVSVDPDNAPD 119

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                    +G +A +  G++ G  I++    +     
Sbjct: 120 MPAMIGASCALS-------------ISDIPFEGPIAGVRVGLIDGEFIINPTVEQAKISQ 166

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ++     T    I+ V+  A     S++     +      I  L++ Q+ +++ 
Sbjct: 167 LNLAVAGTKDA-ILMVEAGANE--VSEETMLDAIWFGHGVIKQLVEFQEKIVAE 217


>gi|57242200|ref|ZP_00370139.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter
           upsaliensis RM3195]
 gi|57016880|gb|EAL53662.1| polyribonucleotide nucleotidyltransferase Cj1253 [Campylobacter
           upsaliensis RM3195]
          Length = 717

 Score =  114 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 89/242 (36%), Gaps = 22/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
           R  GR  N++R I +   +   A GSCL   G T  L  ATL  +    +      +N  
Sbjct: 339 RADGRALNEVRAIEIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMVDLLSEKNPI 398

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G     +A   R+ G       ++ RAL   VD +      + + 
Sbjct: 399 SERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLVKRALYPSVDEN--YPYVVRLV 452

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A + G  +AL               +  VL+G   AI         + 
Sbjct: 453 SEILESNGSSSMATVCGGSLALRAAGVSSIKLVAGVAMGLVLEGDEYAI---------LT 503

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T  G I  +Q   +     ++     L  A++    ++ L +
Sbjct: 504 DIMGLEDHDGDMDFKVAGTKDG-ITALQMDIKLGGIDENILKNALYQAREARLHILDLME 562

Query: 236 DV 237
           + 
Sbjct: 563 EA 564



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 82/241 (34%), Gaps = 41/241 (17%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVK 75
           V+K A GS L++ G + +L T   E+K            +T +Y     + G      +K
Sbjct: 19  VAKQAAGSVLMRVGKSVVLATVAREDKQ----VEEDFLPLTVQYIEKAYAVGRIPGGYIK 74

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE    + G       R+I R+LR +         QI++       +   +  ++  A V
Sbjct: 75  RET---KPGDNETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADDEVDLQVMSLNAASV 131

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
           AL+                  +K  V  +    +    +++    +     +D  +V   
Sbjct: 132 ALYLSGI-------------PIKAPVCGVRIARINDEFVLNPSNSKLKESTLDL-YVAGV 177

Query: 196 SGHIVEVQGSA-----ERATFSQDHFFAML-----------NLAKDRIADLIKLQKDVIS 239
              ++ ++  A     E     +  F   L            L++D I   + + K  I 
Sbjct: 178 KDELLMIEMRALPSESEGEAMVETSFAEALAGTSIYEQVMNELSEDEILQALSVAKKAIL 237

Query: 240 N 240
           N
Sbjct: 238 N 238


>gi|254458763|ref|ZP_05072187.1| 3' exoribonuclease family, domain 2, protein [Campylobacterales
           bacterium GD 1]
 gi|207084529|gb|EDZ61817.1| 3' exoribonuclease family, domain 2, protein [Campylobacterales
           bacterium GD 1]
          Length = 727

 Score =  114 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 89/243 (36%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT--TATLEEKVPMWIRNTKHG- 57
           +R  GR   ++R IS++  V   A  SCL   G+T  L   T    +   M+   T  G 
Sbjct: 346 VRADGRALTEVRPISISTNVLPKAHSSCLFTRGETQALVVLTMGGPKDAQMFESLTDAGT 405

Query: 58  ---WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y     S G          R+ G       +  RAL  +VDL     + + +
Sbjct: 406 QNENFMVHYNFPGFSVGEASPIMGTKRRELGHG----NLAKRALEPIVDLD---GQTVRL 458

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++++++G +  A + G ++AL        D      +  V  G   AI         +
Sbjct: 459 VSEILESNGSSSMATVCGGYMALRAADIDTSDTVAGIAMGMVSDGDKYAI---------L 509

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED   D+D     +  G I  +Q   +    S D     L  AKD  + +I + 
Sbjct: 510 SDIMGLEDHDGDMDFKVTGSKDG-ITAMQMDIKLGGISLDILKEALYQAKDGRSHIIDIM 568

Query: 235 KDV 237
            D 
Sbjct: 569 IDA 571



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 69/207 (33%), Gaps = 24/207 (11%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRV 74
            V++ A GS  +K GD+ +L T  ++E     I       +T +Y     + G       
Sbjct: 20  DVARQANGSAWLKSGDSVILATVVIDETE---IVKDDFLPLTVQYIEKTYAAGKIPGGFF 76

Query: 75  KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
           KRE    +         R++ R+LR +         QI I                +   
Sbjct: 77  KRET---KPSDFETLTSRIVDRSLRPLFPKGFGHPTQITIMV-------------FSAGS 120

Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT 194
            A    L      +  +     +   V+A+    + G  +++    +     +D     T
Sbjct: 121 DADLQVLALNAASAALYTSDIDINTSVSAVRAAKVDGELVLNPTLSQLKEATLDLYLSGT 180

Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLN 221
               ++ ++  +  +  +Q     +++
Sbjct: 181 KDD-LLMIEMRSFGSNETQIEENYIID 206


>gi|118087502|ref|XP_419282.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 728

 Score =  114 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 87/248 (35%), Gaps = 17/248 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWI-----RN 53
           R  GR    +R+I     + K   GS L + G T +L T    ++E  V   +       
Sbjct: 303 RCDGRDLTSLRDIKCEVNMFKMLHGSALFQRGQTQVLCTVTFDSIESSVKSDLISTAVSG 362

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   V+ R+ G       +  RAL+ V+         I 
Sbjct: 363 IKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHG----ALAERALKPVIPQDF--PFTIR 416

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  V K         +     
Sbjct: 417 VTSEVLESNGSSSMASACGGSLALMDAGVPVSSAVAGVAVGLVTKYDPEGRD--IEDYRL 474

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +            +  A     +++++
Sbjct: 475 LTDILGIEDYYGDMDFKMAGTSKG-VTALQVDLKLPGIPIKIIMEAIQQATAAKREILQI 533

Query: 234 QKDVISNE 241
             + ++  
Sbjct: 534 MNETLAKP 541



 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 81/215 (37%), Gaps = 33/215 (15%)

Query: 29  LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
           L++ GDT ++ TA  + K       ++   +  +Y     + G R+    +    G   +
Sbjct: 17  LIQLGDTAVMVTAVSKTK----PSASQFMPLVVDYRQKAAAAG-RIPTNYLRRELGTTDK 71

Query: 89  EI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAWVALHDCLQHM 144
           EI   R+I R++R +  +      QI+  C+++  DG       AI GA  AL       
Sbjct: 72  EILTSRVIDRSIRPLFPVGYFYDTQIL--CNLLAVDGVNDPDVLAINGASAALA------ 123

Query: 145 EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
                         G V A+  G++ G  +++    + S+  ++          +V ++ 
Sbjct: 124 -------LSDIPWNGPVGAVRVGLVDGETVINPTRKQMSSSTLNLVVAAAPQNQVVMLEA 176

Query: 205 SAERATFSQDHFFAMLNLAKD-------RIADLIK 232
           +AE     Q  F   + +           I  L+K
Sbjct: 177 TAENIL--QQDFCHAIKVGVKQTQHIIQGIQQLVK 209


>gi|296448311|ref|ZP_06890203.1| polyribonucleotide nucleotidyltransferase [Methylosinus
           trichosporium OB3b]
 gi|296254188|gb|EFH01323.1| polyribonucleotide nucleotidyltransferase [Methylosinus
           trichosporium OB3b]
          Length = 714

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 93/242 (38%), Gaps = 18/242 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           +R+ GR    +R I     V   A GS L   G+T  L  ATL         ++  G   
Sbjct: 315 VRIDGRDVKTVRPIVAEVGVLPRAHGSALFTRGETQALVVATLGTGEDEQFVDSLEGTYK 374

Query: 58  -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R     ++  RA+R ++  +A     I +  
Sbjct: 375 ERFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPAAAEFPYTIRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++ +++G +  A + G+ +AL D    ++  +    +  +L+G   A+         + D
Sbjct: 431 EITESNGSSSMATVCGSSLALMDAGVPLKKPTAGIAMGLILEGERFAV---------LSD 481

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G +  +Q   + A  +++     L  A+D    ++     
Sbjct: 482 ILGDEDHLGDMDFKVAGTSEG-VTSLQMDIKIAGITEEIMRVALAQARDGRLHILGEMAK 540

Query: 237 VI 238
            +
Sbjct: 541 AL 542



 Score = 81.7 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 72/227 (31%), Gaps = 27/227 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R++ L    +++ A+G+    +G+T +L T  +  K P          +T  Y     + 
Sbjct: 14  RKLVLETGKIARQADGAVFASWGETTVLATV-VSAKAPK--PGQDFFPLTVNYQEKAFAA 70

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G       KRE   GR   R   + R+I R +R +         Q+I+       +    
Sbjct: 71  GRIPGGYFKRE---GRPSERETLVSRLIDRPIRPLFPDGYRNDTQVILTVLSHDLENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                     G V A   G + G   ++    E     
Sbjct: 128 ILAMVAASAALTLSGI-------------PFMGPVGAARVGYINGQLKLNPTIEEMKLSV 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +D     T    ++     +E    S+D     +         +I  
Sbjct: 175 LDLVVAGTSDAVLMV---ESEAQELSEDVMLGAVMTGHRGFQPVIDA 218


>gi|296132896|ref|YP_003640143.1| polyribonucleotide nucleotidyltransferase [Thermincola sp. JR]
 gi|296031474|gb|ADG82242.1| polyribonucleotide nucleotidyltransferase [Thermincola potens JR]
          Length = 735

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 96/250 (38%), Gaps = 28/250 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R+ GR+ +++R I     +     GS L   G T +LT     A  +E++   +   + 
Sbjct: 348 IRIDGRKLDEVRPIECHVGILPRTHGSGLFTRGQTQVLTVTTLGAVGDEQILDGLGVEES 407

Query: 57  GWITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                 Y   P S G  R  R       G R      +  RAL  ++         I + 
Sbjct: 408 KRYMHHYNFPPYSVGEARFMRG-----PGRREIGHGALAERALEPMIPSEDEFPYTIRLV 462

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            +V++++G +   ++ G+ ++L D                 +K  V+ ++ G++      
Sbjct: 463 SEVLESNGSSSMGSVCGSTLSLMDAGV-------------PIKRPVSGVAMGLIKEEDAF 509

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T+ G +  +Q   + A  S++     L  A++    ++
Sbjct: 510 AVLTDIQGMEDHLGDMDFKVAGTEKG-VTAIQMDIKIAGISKEILQVALTQAREGRMHIL 568

Query: 232 KLQKDVISNE 241
               +VI   
Sbjct: 569 SKMLEVIDKP 578



 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 79/225 (35%), Gaps = 27/225 (12%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           RE+ +      K A G+   ++GDT +L TAT      E +  +     +       G +
Sbjct: 35  REMVIETGRMAKQATGAVFCRYGDTAVLVTATCSPEPREGIDFFPLTVDYEERLYAVGKI 94

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   ++    R+I R +R +          I+     +  D    
Sbjct: 95  P---GGFIKRE---GRPSEKAILSSRLIDRPIRPLFPKGYRNDVHIVATVLSVDQDNAPD 148

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI GA  AL                     G + A+  G + G  I++    +    D
Sbjct: 149 VTAINGASAALMISGI-------------PFLGPIGAVVVGRVDGKFIINPTIAQAEVSD 195

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           +      T    ++ V+  A+     ++     ++   + I  ++
Sbjct: 196 MHLTVAGTKDA-VIMVEAGAKEVP--EEVILEAISYGHEEIKKIV 237


>gi|327296349|ref|XP_003232869.1| exosome complex endonuclease 1/ribosomal RNA processing protein
           [Trichophyton rubrum CBS 118892]
 gi|326465180|gb|EGD90633.1| exosome complex endonuclease 1/ribosomal RNA processing protein
           [Trichophyton rubrum CBS 118892]
          Length = 302

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 72/208 (34%), Gaps = 13/208 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWI 59
           +RL GR+ N++R +      +  + GS  +  G+T +L T     +             I
Sbjct: 14  LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGR--SQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                +   +  +R K+ A     G R  + E+   +  A +  +         I +   
Sbjct: 74  NVVVNLAGFANVDRKKKSATGSGGGDRQATTELANSLRDAFQPHIHAHLYPRSTITVHVS 133

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC--GMLCG---- 171
           V+ +DG    A +    +AL D    M        +    +    A++     + G    
Sbjct: 134 VLSSDGSLLAACLNACTLALVDAGIPMPGLLCACTVGMSGRASTPAVTAESAQIGGIKES 193

Query: 172 -YPIVDLDYGED---STIDVDANFVMTD 195
             P++D+   E+     + V     M D
Sbjct: 194 LDPLLDISAPEEVELPYMTVANTNPMPD 221


>gi|229086359|ref|ZP_04218536.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-44]
 gi|228696971|gb|EEL49779.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-44]
          Length = 717

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKSDEVRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEQDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTANG-VTALQMDIKIDGLSREILEEALQQAKIGRMHILD 536

Query: 233 LQKDVISNE 241
                I+  
Sbjct: 537 HMLTAIAEP 545



 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTIETGQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDVPFEGPIAGATVGRIDGEFVINPTVEQQEKSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  L+  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLVAFQEEIV 223


>gi|289766578|ref|ZP_06525956.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D11]
 gi|289718133|gb|EFD82145.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. D11]
          Length = 703

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 92/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
           R+ GR   ++R +     V     GS L   G+T  L   TL  K    + +      + 
Sbjct: 328 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 387

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RALR V+         I +  +
Sbjct: 388 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSE 443

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  ++L                   +K HVA I+ G++        
Sbjct: 444 ITESNGSSSQASICGGSLSLMAAGV-------------PIKEHVAGIAMGLIKEGEEFTV 490

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T SG I  +Q   +    +++     LN A     ++++L
Sbjct: 491 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHQARLEILEL 549

Query: 234 QKDVISNE 241
               IS  
Sbjct: 550 MNSTISKP 557



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 89/233 (38%), Gaps = 33/233 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + ++   +S+ + G+ ++++GDT LL+TA    +     +      +T +Y     ST
Sbjct: 18  RTLKVSTGKISRQSSGAIVIQYGDTVLLSTA---NRSKEARKGADFFPLTVDYIEKFYST 74

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           G       KRE   GR    +  + R+I R +R +       +  + I   V+  D    
Sbjct: 75  GKFPGGFNKRE---GRPSTNATLVARLIDRPIRPMFPDGF--NYDVHIVNTVLSYDEINT 129

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
                I G+ +AL                     G VA ++ G   G  I++    E   
Sbjct: 130 PDYLGIIGSSLAL-------------MISDIPFLGPVAGVTVGYKNGEFILNPSPKELEE 176

Query: 185 IDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            ++D +   T    ++VE    A      ++     +  A + I  + + Q++
Sbjct: 177 SELDLSVAGTKEAVNMVE----AGAKELDEETMLKAIMFAHENIKKICEFQEE 225


>gi|256028665|ref|ZP_05442499.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium sp. D11]
          Length = 699

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 92/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
           R+ GR   ++R +     V     GS L   G+T  L   TL  K    + +      + 
Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RALR V+         I +  +
Sbjct: 384 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGS----LAERALRYVIPTEEEFPYTIRVVSE 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  ++L                   +K HVA I+ G++        
Sbjct: 440 ITESNGSSSQASICGGSLSLMAAGV-------------PIKEHVAGIAMGLIKEGEEFTV 486

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T SG I  +Q   +    +++     LN A     ++++L
Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHQARLEILEL 545

Query: 234 QKDVISNE 241
               IS  
Sbjct: 546 MNSTISKP 553



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 89/233 (38%), Gaps = 33/233 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + ++   +S+ + G+ ++++GDT LL+TA    +     +      +T +Y     ST
Sbjct: 14  RTLKVSTGKISRQSSGAIVIQYGDTVLLSTA---NRSKEARKGADFFPLTVDYIEKFYST 70

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           G       KRE   GR    +  + R+I R +R +       +  + I   V+  D    
Sbjct: 71  GKFPGGFNKRE---GRPSTNATLVARLIDRPIRPMFPDGF--NYDVHIVNTVLSYDEINT 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
                I G+ +AL                     G VA ++ G   G  I++    E   
Sbjct: 126 PDYLGIIGSSLAL-------------MISDIPFLGPVAGVTVGYKNGEFILNPSPKELEE 172

Query: 185 IDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            ++D +   T    ++VE    A      ++     +  A + I  + + Q++
Sbjct: 173 SELDLSVAGTKEAVNMVE----AGAKELDEETMLKAIMFAHENIKKICEFQEE 221


>gi|160900616|ref|YP_001566198.1| polynucleotide phosphorylase/polyadenylase [Delftia acidovorans
           SPH-1]
 gi|226702646|sp|A9BNB8|PNP_DELAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|160366200|gb|ABX37813.1| Polyribonucleotide nucleotidyltransferase [Delftia acidovorans
           SPH-1]
          Length = 753

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 93/247 (37%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  +TL  +        +      
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTERDAQRIDALAGEFED 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +         I +  +
Sbjct: 377 RFLFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALAACLPSKEEFPYTIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G  +++ D    M             K HVA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLIKEDNRFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T SG I  +Q   +    +++     L  AK+    ++  
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTSG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538

Query: 234 QKDVISN 240
            ++ +  
Sbjct: 539 MQEAMGE 545



 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 76/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           +++    +++ A G+ LV   DT +L T       +     +     +   T   G +P 
Sbjct: 18  VTMETGEIARQASGAVLVNIDDTVVLATVVASKQAKSGQDFFPLTVDYIEKTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  KREA   +         R+I R +R +          ++I    +  +     A
Sbjct: 77  --GSFFKREA---KPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTVSLNPEVDADIA 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+     AL                     G + A   G + G  +++    +     +D
Sbjct: 132 ALIATSAALSVSGI-------------PFNGPIGAARVGFINGEYVLNPGQTQRKDSQMD 178

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237
                T++  ++     +E     +D     +       +  I  + +L ++ 
Sbjct: 179 LVVAGTEAAVLMV---ESEAQQLPEDVMLGAVVFGHEQGRIAIDAIHELVREA 228


>gi|212212692|ref|YP_002303628.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii
           CbuG_Q212]
 gi|226702642|sp|B6J0K5|PNP_COXB2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|212011102|gb|ACJ18483.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii
           CbuG_Q212]
          Length = 696

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 91/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I++   V   + GS L   G+T  L   TL  +        +   +  
Sbjct: 318 RIDGRDSKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLGTERDAQSIDDLDGDRQE 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G          R+ G      R+  RA+  VV         I +  +
Sbjct: 378 EFIFHYNFPPFCVGEVGFMSGPKRREIGHG----RLAKRAVVPVVPTLDKFPYVIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           +++++G +  A++ G+ +AL D                  K  VA I+ G++        
Sbjct: 434 ILESNGSSSMASVCGSSLALMDAGV-------------PTKAPVAGIAMGLIKENDKYAV 480

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     L+ AK+    ++ +
Sbjct: 481 LSDILGDEDHLGDMDFKVAGTSNG-VTALQMDIKIEGITKEIMEQALDQAKEGRLHILSI 539

Query: 234 QKDVISNE 241
              V+   
Sbjct: 540 MNKVLDKP 547



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 80/230 (34%), Gaps = 30/230 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           E++     +++ A G+ +V+ GDT LL +       EE    +     +   T   G +P
Sbjct: 14  EVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTINYQEKTYAAGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR   +     R+I R LR +         Q+I     + +   T  
Sbjct: 74  ---GGYFKRE---GRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVDSKVPTDI 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AI GA  A+                     G + A   G   G  +++    E     +
Sbjct: 128 PAILGASAAIGLSGI-------------PFNGSLGAARVGYRGGEYLLNPSLDELKDSAL 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQD-----HFFAMLNLAKDRIADLIK 232
           D     T    ++ V+  A+    S       H    + +A   IA+ I+
Sbjct: 175 DLVVAGTRDA-VLMVESEAQELPESVMLGAVLHGHQAMQVAIQAIAEFIQ 223


>gi|219669688|ref|YP_002460123.1| polynucleotide phosphorylase/polyadenylase [Desulfitobacterium
           hafniense DCB-2]
 gi|254782717|sp|B8FR00|PNP_DESHD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219539948|gb|ACL21687.1| Polyribonucleotide nucleotidyltransferase [Desulfitobacterium
           hafniense DCB-2]
          Length = 723

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 90/234 (38%), Gaps = 26/234 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR  +++R IS+   +     G+ L   G T +LT AT     +E++   +   + 
Sbjct: 319 IRPDGRALDEIRPISVEVGILPRTHGTGLFTRGQTQVLTVATLGAVGDEQILDGLGLEES 378

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G          R+ G       +  RAL  V+         I +  
Sbjct: 379 KRYMHHYNFPPYSVGETRPMRGPGRREIGHG----ALAERALLPVIPNENDFPYTIRLVS 434

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G +  A++ G+ ++L D                 +K  VA I+ G++       
Sbjct: 435 EVLESNGSSSMASVCGSTLSLMDAGV-------------PVKSPVAGIAMGLISEENHIA 481

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK+ 
Sbjct: 482 ILSDIQGMEDHDGDMDFKVAGTSQG-VTALQMDIKIKGVSREILERALTQAKEG 534



 Score = 71.7 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 76/226 (33%), Gaps = 27/226 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R ++       K A G+   ++GDT +   AT      E +  +    +        G +
Sbjct: 15  RTMTFQTGKIGKQAGGAIFCRYGDTVVSAFATGSAQPREGIDFFPLTVEFEERLYAAGKI 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   ++    R+I R +R +         Q++     +  D  + 
Sbjct: 75  P---GGFIKRE---GRPSEKAILSARLIDRPIRPLFPEGYRNDVQVVAQVMSVDQDCASD 128

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              I  A  AL                +   +G VAA++ G++    I++    +     
Sbjct: 129 ITGINAASAAL-------------TISNVPFEGPVAAVTVGLIGDEFIINPTVEQSEKSV 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ V+  A+     +      +      I  + +
Sbjct: 176 MHLTVAGTKDA-VMMVEAGAQEVP--EAQMLEAIMFGHREIQRIAE 218


>gi|299137357|ref|ZP_07030539.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp.
           MP5ACTX8]
 gi|298600762|gb|EFI56918.1| polyribonucleotide nucleotidyltransferase [Acidobacterium sp.
           MP5ACTX8]
          Length = 818

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 18/244 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKH 56
           +R   R  +++R I++   V     GS L   G+T  L +ATL               + 
Sbjct: 314 IRPDHRAFDEIRAITIETGVLPRVHGSALFTRGETQALVSATLGTTDDAQRMESYEGEQK 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +   V  R+ G       +  RA+ +V+         + +  
Sbjct: 374 RKFMLHYNFPPFSVGEVGRMTGVGRREIGHG----ALAWRAIEAVLPGEDESPYTLRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           D+++++G +  A + GA ++L      ++       +  V +G   AI         + D
Sbjct: 430 DILESNGSSSMATVCGASLSLMQAGIPLKGSVAGVAMGLVKEGDKYAI---------LTD 480

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T +G I  +Q   +    +       L  A+     L+     
Sbjct: 481 IAGAEDHYGDMDFKVAGTRNG-ITALQMDIKIMGITAQIMREALEQARHGRLFLLDKMDA 539

Query: 237 VISN 240
           +IS 
Sbjct: 540 IISK 543



 Score = 94.0 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 79/225 (35%), Gaps = 27/225 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
           +I      ++K A G+     GD  +L TA      +E +  +    ++   T   G +P
Sbjct: 14  QIKFETGRIAKQASGAAYTTSGDNAVLATAVASPDPKEGIDFFPLTVEYREFTYAGGRIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   +     R I R +R +   +     Q++        +     
Sbjct: 74  ---GGFIKRE---GRPSEKEILTSRQIDRPIRPLFPEAFRNETQVVAFVYSADKENDPDV 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
             I GA  AL                     G V A+  G +    IV+  Y E  T  +
Sbjct: 128 LGINGASCALA-------------LSDIPFHGPVGAVRIGYIDEQYIVNPTYTERLTSKL 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +   V T  G IV V+  A+     ++     +  A + I  ++ 
Sbjct: 175 NIMVVGTKDG-IVMVESGAKEIP--EEVVVGAIEFAHEEIKKIVA 216


>gi|294943374|ref|XP_002783844.1| Exosome complex exonuclease RRP41, putative [Perkinsus marinus ATCC
           50983]
 gi|239896637|gb|EER15640.1| Exosome complex exonuclease RRP41, putative [Perkinsus marinus ATCC
           50983]
          Length = 248

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 80/245 (32%), Gaps = 29/245 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--------MWIR 52
            RL GR+ N++R ++L    +  A+GS  ++ G T ++        +           + 
Sbjct: 13  FRLDGRRPNELRHLTLKIGDAPSADGSATLQQGLTKVVAHVFGPRPLQAASVGRAAGTMA 72

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
                 +   Y     +T +R +R         R   +QR+I  A    V         I
Sbjct: 73  RQGEAIVNVVYRTSSFATIDRKRRTTGDRNSTERQLWLQRIIQDA----VLTEMFPKSCI 128

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            +   ++Q DG                        +        +K   +A + G++   
Sbjct: 129 DVHLTILQEDGS-------------ALAACVNAAAAALVDAGIPIKDMFSACTVGLVNNQ 175

Query: 173 -PIVDLDYGE-DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
            PIVDL++ E +          +       E+         + + F +  +LA +     
Sbjct: 176 KPIVDLNHAESEGCGGAVVTVAVYQRRK--ELNYLCLEGKINIESFESAADLAIEGAVTA 233

Query: 231 IKLQK 235
           ++  +
Sbjct: 234 VRAMR 238


>gi|172057841|ref|YP_001814301.1| polyribonucleotide nucleotidyltransferase [Exiguobacterium
           sibiricum 255-15]
 gi|226702652|sp|B1YI57|PNP_EXIS2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|171990362|gb|ACB61284.1| Polyribonucleotide nucleotidyltransferase [Exiguobacterium
           sibiricum 255-15]
          Length = 739

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 91/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +R  GR   ++R +     +   A GS L   G T +L+ ATL       I +       
Sbjct: 316 VRPDGRGLAEIRPLDSEIGLLPRAHGSGLFTRGQTQVLSVATLGVAGDAQIIDGLGLKAE 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      A   R+ G       +  RAL  V+         I +  
Sbjct: 376 KRFMHHYNFPPFSVGEARPMRAPGRREIGHG----ALGERALLPVLPSETDFPYTIRLVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY--- 172
           +V++++G +  A+I G+ +A+ D                 LK  VA I+ G++  G    
Sbjct: 432 EVLESNGSSSQASICGSILAMMDAGV-------------PLKAPVAGIAMGLIKEGENYS 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    ++      L  A+     +++
Sbjct: 479 ILTDIQGMEDHLGDMDFKVAGTKDG-VTALQMDMKIGGITRQILEEALEQARLGRLHILE 537

Query: 233 LQKDVISNE 241
               VI+  
Sbjct: 538 HMNSVIAEP 546



 Score = 99.4 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 92/233 (39%), Gaps = 28/233 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ L+++G+T +L T       + +  +     +       G +P
Sbjct: 15  RPLTIEIGQLAKQANGAALIRYGETAVLATVVASKQPKDLDFFPLTVNYEEKLYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR G  +    R+I R +R +         Q+         D     
Sbjct: 75  ---GGFLKRE---GRPGENAILTSRLIDRPIRPLFPDGFRHDIQVATTVLSSDEDNSPEV 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ GA +AL                     G +A ++ G + G  I++    + S  D+
Sbjct: 129 AAMIGASIALS-------------ISDIPFDGPIAGVTIGRVNGEFIINPTMSQASESDI 175

Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D     T  + ++VE    A     S+      + L  D I +LI  Q+++++
Sbjct: 176 DLQVAGTKHAVNMVE----AGAKEVSEQAMLEAILLGHDVIKELIAFQEEIVA 224


>gi|29654180|ref|NP_819872.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii RSA
           493]
 gi|154705957|ref|YP_001424300.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii
           Dugway 5J108-111]
 gi|161829803|ref|YP_001596852.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii RSA
           331]
 gi|81629147|sp|Q83D87|PNP_COXBU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610292|sp|A9KFK6|PNP_COXBN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610293|sp|A9ND62|PNP_COXBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|29541446|gb|AAO90386.1| hypothetical protein CBU_0852 [Coxiella burnetii RSA 493]
 gi|154355243|gb|ABS76705.1| hypothetical protein CBUD_0917 [Coxiella burnetii Dugway 5J108-111]
 gi|161761670|gb|ABX77312.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii RSA
           331]
          Length = 696

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 91/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I++   V   + GS L   G+T  L   TL  +        +   +  
Sbjct: 318 RIDGRDTKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLGTERDAQSIDDLDGDRQE 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G          R+ G      R+  RA+  VV         I +  +
Sbjct: 378 EFIFHYNFPPFCVGEVGFMSGPKRREIGHG----RLAKRAVVPVVPTLDKFPYVIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           +++++G +  A++ G+ +AL D                  K  VA I+ G++        
Sbjct: 434 ILESNGSSSMASVCGSSLALMDAGV-------------PTKAPVAGIAMGLIKENDKYAV 480

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     L+ AK+    ++ +
Sbjct: 481 LSDILGDEDHLGDMDFKVAGTSNG-VTALQMDIKIEGITKEIMEQALDQAKEGRLHILSI 539

Query: 234 QKDVISNE 241
              V+   
Sbjct: 540 MNKVLDKP 547



 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 80/230 (34%), Gaps = 30/230 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           E++     +++ A G+ +V+ GDT LL +       EE    +     +   T   G +P
Sbjct: 14  EVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTVNYQEKTYAAGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR   +     R+I R LR +         Q+I     + +   T  
Sbjct: 74  ---GGYFKRE---GRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVDSKVPTDI 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AI GA  A+                     G + A   G   G  +++    E     +
Sbjct: 128 PAILGASAAIGLSGI-------------PFNGSLGAARVGYRGGEYLLNPSLDELKDSAL 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQD-----HFFAMLNLAKDRIADLIK 232
           D     T    ++ V+  A+    S       H    + +A   IA+ I+
Sbjct: 175 DLVVAGTRDA-VLMVESEAQELPESVMLGAVLHGHQAMQVAIQAIAEFIQ 223


>gi|169827176|ref|YP_001697334.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus
           sphaericus C3-41]
 gi|226702661|sp|B1HR13|PNP_LYSSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|168991664|gb|ACA39204.1| Polyribonucleotide nucleotidyltransferase [Lysinibacillus
           sphaericus C3-41]
          Length = 704

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 90/245 (36%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    + +   GS L   G T  L   T  A  + ++   +   + 
Sbjct: 314 IRPDGRKLDEIRPLSSETGLLQRTHGSGLFTRGQTQALSICTLGALGDVQIIDGLGVEES 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G            G R      +  RAL +V+   ++    I    
Sbjct: 374 KRFMHHYNFPQFSVGE----TGPIRGPGRREIGHGALGERALEAVIPDESVFPYTIRCVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G T  A+I  + +A+ D    ++       +  + KG   +I         + D
Sbjct: 430 EVLESNGSTSQASICASTLAMMDAGVPLKAPVAGIAMGLIKKGEHYSI---------LTD 480

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G +  +Q   +    S++     L  AK     +++    
Sbjct: 481 IQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSRNILEEALTQAKVGRMHILESMLA 539

Query: 237 VISNE 241
            ++  
Sbjct: 540 TLAEP 544



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L+TAT+    + +  +     +       G +P
Sbjct: 14  RPLVIEVGQLAKQANGAVLVRYGDTSVLSTATMSKSPKPLDFFPLTVNYEERLYAAGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q+I       +D  +  
Sbjct: 74  ---GGFIKRE---GRPSEKAILASRLIDRPIRPMFPDGFRNEVQVISMVMSNDSDCTSEM 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  IV+    + +   +
Sbjct: 128 AAMVGSSLALA-------------ISDIPFDGPIAGVQVGYIDGEFIVNPTVEQSNQSTI 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             +        I  V+  A      ++     +    + I  +I  Q+ +++ 
Sbjct: 175 HLSVAGNKDA-INMVEAGALEVP--EEVMLEAIMFGHEEIKKIIAFQEQIVAE 224


>gi|54295598|ref|YP_128013.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila
           str. Lens]
 gi|81367664|sp|Q5WT40|PNP_LEGPL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|53755430|emb|CAH16926.1| Polynucleotide phosphorylase (PNPase) [Legionella pneumophila str.
           Lens]
          Length = 729

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 93/244 (38%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R IS+  +  +   GSCL   G+T  +  ATL  +        I      
Sbjct: 314 RIDGRDHRTVRPISVRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQILDGISGESRD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      R+  RAL +V+  +      + I  +
Sbjct: 374 RFMLHYNFPPYSVGETGQVGSPKRREIGHG----RLAKRALMAVLPDANEFPYVLRIVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    ++       +  + +G   A+         + D+
Sbjct: 430 ITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAV---------LTDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   + +  + +     L  A +    ++ +  + 
Sbjct: 481 LGDEDHLGDMDFKVAGTEKG-ITALQMDIKISGITNEIMERALEQALEGRTHILGVMNNA 539

Query: 238 ISNE 241
           ++  
Sbjct: 540 LAEH 543



 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 77/231 (33%), Gaps = 31/231 (13%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRST 70
           L    V++ A+G+ +     T +L T        E    +     +       G +P   
Sbjct: 17  LETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNYQEKFYAIGKIP--- 73

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR       I R+I R +R +   +     QII     +  +      A+
Sbjct: 74  GGFNKRE---GRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVSPDIIAM 130

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  AL                     G + A   G   G  +++    E     +D  
Sbjct: 131 IGASAALS-------------ISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLV 177

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237
              T    I+ V+  +E    S+D     +     + K+ I  + +L +DV
Sbjct: 178 IAGTKDA-ILMVE--SEAQELSEDIMRGAMLYGHEMMKNVIKSIEELARDV 225


>gi|158320566|ref|YP_001513073.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus oremlandii
           OhILAs]
 gi|187470976|sp|A8MFB4|PNP_ALKOO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|158140765|gb|ABW19077.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus oremlandii
           OhILAs]
          Length = 706

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 90/244 (36%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           R   RQ +++R IS    +     GS L   G T +L+  T     + ++   +   +  
Sbjct: 314 RPDDRQHDEIRPISCEVDLLPKTHGSGLFTRGQTQVLSIVTLGAIGDVQILDGLGKEESK 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G       +  RAL  ++         I +  +
Sbjct: 374 RYMHHYNFPPYSVGETKMLRSPGRREIGHG----ALAERALEPMIPSQDDFPYAIRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G +  A++ G+ ++L D    ++D      +  V +G   AI         + D+
Sbjct: 430 VLASNGSSSQASVCGSTLSLLDAGVPLKDMVAGIAMGLVKEGDAVAI---------LSDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   +     +      L  A+     ++   K+ 
Sbjct: 481 QGMEDHLGDMDFKVAGTAKG-ITAIQMDIKIKGIDEPILKDALEQARVGRLYILDKMKEA 539

Query: 238 ISNE 241
           IS+ 
Sbjct: 540 ISSP 543



 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 82/225 (36%), Gaps = 27/225 (12%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + +        + GSCL+K+G T +L  A    +  E +  +  +  +       G +
Sbjct: 12  RVLEVEVGKLAQLSNGSCLLKYGQTAVLVNACASKSPREGIDFFPLSVDYEEKMYAAGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR    +    R+I R +R +         QII     +  D    
Sbjct: 72  P---GGFIKRE---GRPSENAILTSRLIDRPIRPLFPDGYRNDVQIIATVLSVDIDCTPD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +AL                    +G  A++  G++ G  +++    E     
Sbjct: 126 IVAMLGSSIALS-------------ISDIPFQGPTASVHVGLVDGKLLINPTSDEREHSS 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           +D     T    ++ ++  A     ++      +  A + I ++I
Sbjct: 173 LDLVVSGTKDA-VMMIEAGANE--VTEAQMLEAILFAHEEIKNII 214


>gi|332528747|ref|ZP_08404724.1| polynucleotide phosphorylase/polyadenylase [Hylemonella gracilis
           ATCC 19624]
 gi|332041813|gb|EGI78162.1| polynucleotide phosphorylase/polyadenylase [Hylemonella gracilis
           ATCC 19624]
          Length = 717

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 91/247 (36%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L   TL  +        +      
Sbjct: 317 RIDGRDTRTVRPIEIRDSVLPRTHGSALFTRGETQALVITTLGTERDAQRIDALAGEFED 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +      R+ G      R+  RAL +V+         + +  +
Sbjct: 377 RFMLHYNMPPFATGETGRVGTPKRREIGHG----RLAKRALVAVLPTKEEFPYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G  ++L +                 LK HVA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGGCLSLMNAGV-------------PLKAHVAGIAMGLIKEDNKFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     L  AK+    ++  
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITREIMQVALAQAKEARMHILGK 538

Query: 234 QKDVISN 240
            +  +  
Sbjct: 539 MQAAVGE 545



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 78/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           +++    +++ + G+ LV   DT +L T     + +     +     +   +   G +P 
Sbjct: 18  VTMETGEIARQSSGAVLVNVDDTVVLATVVASKSAKPGQDFFPLTVDYLEKSYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  KRE   GR         R+I R +R +         Q++I    +  +      
Sbjct: 77  --GSFFKRE---GRPSEYETLTSRLIDRPIRPLFPEGFFNEVQVVIHTVSLNPEVDADIP 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+     AL                     G + A   G + G  +++    +     +D
Sbjct: 132 AMIATSAALAISGI-------------PFNGPIGAARVGYINGEYVLNPGQTQRKDSQMD 178

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237
                T++  ++     +E    S++     +    +  K  I  +  L +D 
Sbjct: 179 LVVAGTETAVLMV---ESEALQLSEEIMLGAVVFGHDQGKIAINAIHDLVRDA 228


>gi|307611640|emb|CBX01326.1| polynucleotide phosphorylase [Legionella pneumophila 130b]
          Length = 729

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 93/244 (38%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R IS+  +  +   GSCL   G+T  +  ATL  +        I      
Sbjct: 314 RIDGRDHRTVRPISVRTKFLERTHGSCLFTRGETQAIVVATLGNERDAQILDGISGESRD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      R+  RAL +V+  +      + I  +
Sbjct: 374 RFMLHYNFPPYSVGETGQVGSPKRREIGHG----RLAKRALMAVLPDANEFPYVLRIVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    ++       +  + +G   A+         + D+
Sbjct: 430 ITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAV---------LTDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   + +  + +     L  A +    ++ +  + 
Sbjct: 481 LGDEDHLGDMDFKVAGTEKG-ITALQMDIKISGITNEIMERALEQALEGRTHILGVMNNA 539

Query: 238 ISNE 241
           ++  
Sbjct: 540 LAEH 543



 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 77/231 (33%), Gaps = 31/231 (13%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRST 70
           L    V++ A+G+ +     T +L T        E    +     +       G +P   
Sbjct: 17  LETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNYQEKFYAIGKIP--- 73

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR       I R+I R +R +   +     QII     +  +      A+
Sbjct: 74  GGFNKRE---GRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPEVSPDIIAM 130

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  AL                     G + A   G   G  +++    E     +D  
Sbjct: 131 IGASAALS-------------ISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLV 177

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKDV 237
              T    I+ V+  +E    S+D     +     + K+ I  + +L +DV
Sbjct: 178 IAGTKDA-ILMVE--SEAQELSEDIMRGAMLYGHEMMKNVIKSIEELARDV 225


>gi|89895255|ref|YP_518742.1| polynucleotide phosphorylase/polyadenylase [Desulfitobacterium
           hafniense Y51]
 gi|122482382|sp|Q24UJ4|PNP_DESHY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|89334703|dbj|BAE84298.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 727

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 90/234 (38%), Gaps = 26/234 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR  +++R IS+   +     G+ L   G T +LT AT     +E++   +   + 
Sbjct: 319 IRPDGRALDEIRPISVEVGILPRTHGTGLFTRGQTQVLTVATLGAVGDEQILDGLGLEES 378

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G          R+ G       +  RAL  V+         I +  
Sbjct: 379 KRYMHHYNFPPYSVGETRPMRGPGRREIGHG----ALAERALLPVIPDENDFPYTIRLVS 434

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G +  A++ G+ ++L D                 +K  VA I+ G++       
Sbjct: 435 EVLESNGSSSMASVCGSTLSLMDAGV-------------PVKSPVAGIAMGLISEENHIA 481

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK+ 
Sbjct: 482 ILSDIQGMEDHDGDMDFKVAGTSQG-VTALQMDIKIKGVSREILERALTQAKEG 534



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 76/226 (33%), Gaps = 27/226 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R ++       K A G+   ++GDT +   AT      E +  +    +        G +
Sbjct: 15  RTMTFQTGKIGKQAGGAIFCRYGDTVVSAFATGSAQPREGIDFFPLTVEFEERLYAAGKI 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   ++    R+I R +R +         Q++     +  D  + 
Sbjct: 75  P---GGFIKRE---GRPSEKAILSARLIDRPIRPLFPEGYRNDVQVVAQVMSVDQDCASD 128

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              I  A  AL                +   +G VAA++ G++    I++    +     
Sbjct: 129 ITGINAASAAL-------------TISNVPFEGPVAAVTVGLIGDEFIINPTVEQSEKSV 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ V+  A+     +      +      I  + +
Sbjct: 176 MHLTVAGTKDA-VMMVEAGAQEVP--EAQMLEAIMFGHREIQRIAE 218


>gi|255569434|ref|XP_002525684.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
           communis]
 gi|223534984|gb|EEF36667.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
           communis]
          Length = 948

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 90/238 (37%), Gaps = 17/238 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56
           R  GR  + +R I+    +   A GS L   G+T  L  ATL +     KV   +   + 
Sbjct: 450 RSDGRNADGIRPINSRCGLLPRAHGSALFTRGETQSLAVATLGDKQMAQKVDNLVDVDEF 509

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +  A S R+ G       +  RAL  ++   A     I ++ 
Sbjct: 510 KRFYLQYSFPPSSVGEVGRMGAPSRREIGHGM----LAERALEPILPSEADFPYTIRVES 565

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175
            + +++G +  A++ G  +AL D    ++       +     G V         G P++ 
Sbjct: 566 TITESNGSSSMASVCGGCLALQDAGVPVKCSIAGIAM-----GMVLDTEEFGGDGTPLIL 620

Query: 176 -DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            D+   ED++ D+D      + G +   Q   +    +       L  A+D    ++ 
Sbjct: 621 SDITGSEDASGDMDFKVAGNEDG-VTAFQMDIKVGGITLPVMRRALLQARDGRKHILA 677



 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 85/224 (37%), Gaps = 27/224 (12%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE--YGMLPR 68
           R I +    + + A GS +V  G+T + TT  L++ VP    +     +  +  +    R
Sbjct: 100 RHILVETGHTGRQASGSVMVTDGETIVYTTVCLDD-VPSEPSDFFPLSVNYQERFSAAGR 158

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126
           ++G   KRE   GR       I R+I R LR  +        QI+    V+  DG   + 
Sbjct: 159 TSGGFFKRE---GRAKDHEVLICRLIDRPLRPTMLKGFYHETQIL--SWVLSYDGLHSSD 213

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+T A +A+                       +A +  G++    IV+    E     
Sbjct: 214 ALAVTAAGIAVA-------------LSEVPTTKAIAGVRVGLVGDKFIVNPTTKEMEESK 260

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           +D     TDS  I+ ++G        ++     + + +D +  +
Sbjct: 261 LDLVMAGTDSA-ILMIEG--YCNFLPEEKLLEAVQVGQDAVRAI 301


>gi|42782895|ref|NP_980142.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus ATCC
           10987]
 gi|81409473|sp|Q732R5|PNP_BACC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|42738822|gb|AAS42750.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
           10987]
          Length = 712

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRMHILD 536

Query: 233 LQKDVISNE 241
               VI+  
Sbjct: 537 HMLSVIAEP 545



 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|153207996|ref|ZP_01946530.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165918905|ref|ZP_02218991.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii RSA
           334]
 gi|212218334|ref|YP_002305121.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii
           CbuK_Q154]
 gi|226702641|sp|B6J6S7|PNP_COXB1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|120576196|gb|EAX32820.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165917375|gb|EDR35979.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii RSA
           334]
 gi|212012596|gb|ACJ19976.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii
           CbuK_Q154]
          Length = 696

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 91/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I++   V   + GS L   G+T  L   TL  +        +   +  
Sbjct: 318 RIDGRDTKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLGTERDAQSIDDLDGDRQE 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G          R+ G      R+  RA+  VV         I +  +
Sbjct: 378 EFIFHYNFPPFCVGEVGFMSGPKRREIGHG----RLAKRAVVPVVPTLDKFPYVIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           +++++G +  A++ G+ +AL D                  K  VA I+ G++        
Sbjct: 434 ILESNGSSSMASVCGSSLALMDAGV-------------PTKAPVAGIAMGLIKENDKYAV 480

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     L+ AK+    ++ +
Sbjct: 481 LSDILGDEDHLGDMDFKVAGTSNG-VTALQMDIKIEGITKEIMEQALDQAKEGRLHILSI 539

Query: 234 QKDVISNE 241
              V+   
Sbjct: 540 MNKVLDKP 547



 Score = 74.0 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 80/230 (34%), Gaps = 30/230 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           E++     +++ A G+ +V+ GDT LL +       EE    +     +   T   G +P
Sbjct: 14  EVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTVNYQEKTYAAGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR   +     R+I R LR +         Q+I     + +   T  
Sbjct: 74  ---GGYFKRE---GRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVDSKVPTDI 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AI GA  A+                     G + A   G   G  +++    E     +
Sbjct: 128 PAILGASAAIGLSGI-------------PFNGSLGAARVGYRGGEYLLNPSLDELKDSAL 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQD-----HFFAMLNLAKDRIADLIK 232
           D     T    ++ V+  A+    S       H    + +A   IA+ I+
Sbjct: 175 DLVVAGTRDA-VLMVESEAQELPESVMLGAVLHGHQAMQVAIQAIAEFIQ 223


>gi|298293847|ref|YP_003695786.1| polyribonucleotide nucleotidyltransferase [Starkeya novella DSM
           506]
 gi|296930358|gb|ADH91167.1| polyribonucleotide nucleotidyltransferase [Starkeya novella DSM
           506]
          Length = 718

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 91/242 (37%), Gaps = 18/242 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           +R+ GR    +R I     V   A GS L   G+T  L  ATL         ++  G   
Sbjct: 317 VRIDGRDTKTVRPIVSEVGVLPRAHGSALFTRGETQALVVATLGTGEDEQFIDSLEGTYK 376

Query: 58  -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R     ++  RA+R ++  +      +    
Sbjct: 377 ERFLLHYNFPPFSVGETGR----MGSPGRREIGHGKLAWRAIRPILPPAHEFPYTLRAVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A + G  +AL D    M        +  +L+G   A+         + D
Sbjct: 433 EILESNGSSSMATVCGTSLALMDAGVPMRRPVAGIAMGLILEGEKFAV---------LSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     TD G +  +Q   + A  +++     L  AKD  A ++     
Sbjct: 484 ILGDEDHLGDMDFKVAGTDKG-VTALQMDIKIAGITEEIMKVALAQAKDGRAHILGEMAK 542

Query: 237 VI 238
            +
Sbjct: 543 AL 544



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 75/235 (31%), Gaps = 36/235 (15%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + L      + A+G+ L  +GDT +L TA      +     +     +       G +
Sbjct: 14  RTLVLETGRMARQADGAVLATYGDTTVLATAVSAKAPKPGQDFFPLTVNYQEKAYAAGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +   + R+I R +R +         Q+++       +    
Sbjct: 74  P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFAEGYKNDTQVVVTVLSHDLENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             ++  A  AL                     G +     G +    +++    E     
Sbjct: 128 VVSMVAASAAL-------------TLSGVPFMGPIGGARVGFIDNEYVLNPTLDEVKESA 174

Query: 187 VDANFVMTDSGHIV---EVQGSAER-----ATFSQDHFFAMLN----LAKDRIAD 229
           +D     T    ++   E +  AE        F   HF  +++    LA+    +
Sbjct: 175 LDLVVAGTADAVLMVESEAKELAEEVMLGAVMFGHRHFQPVIDAIIRLAEKAAKE 229


>gi|239816487|ref|YP_002945397.1| polynucleotide phosphorylase/polyadenylase [Variovorax paradoxus
           S110]
 gi|259534173|sp|C5CT24|PNP_VARPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|239803064|gb|ACS20131.1| Polyribonucleotide nucleotidyltransferase [Variovorax paradoxus
           S110]
          Length = 772

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L   TL  +      +   G    
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQGLVVTTLGTERDAQRIDALAGEYED 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL +V+         I +  +
Sbjct: 377 RFLFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVAVLPTKEEFPYTIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G  +++ D    M             K HVA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLIKEDNRFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     L  AK+    ++  
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538

Query: 234 QKDVISN 240
            ++ +  
Sbjct: 539 MQEAMGE 545



 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 77/237 (32%), Gaps = 39/237 (16%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           + +    +++ A G+ +V    T +L T     T +     +     +   T   G +P 
Sbjct: 18  VVMETGEIARQASGAVVVDIDGTVILATVVASKTAKPGQDFFPLTVDYIEKTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  KREA   +         R+I R +R +     L    ++I    +  +     A
Sbjct: 77  --GSFFKREA---KPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVIHTLSLNPEVDADIA 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G   AL                     G + A   G + G  +++          +D
Sbjct: 132 AMIGVSAALSISGI-------------PFSGPIGAARVGYINGQYVLNPGQTARKDSQMD 178

Query: 189 ANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
                T++  ++   E Q  +E        F  +        A   I  + +L +D 
Sbjct: 179 LVVAGTEAAVLMVESEAQQLSEEIMLGGVVFGHEQ-------ANIAINAIHELVRDA 228


>gi|206978199|ref|ZP_03239080.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
           H3081.97]
 gi|217961227|ref|YP_002339795.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus AH187]
 gi|222097252|ref|YP_002531309.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus Q1]
 gi|229140448|ref|ZP_04269003.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST26]
 gi|229197917|ref|ZP_04324633.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1293]
 gi|226702618|sp|B7HLE0|PNP_BACC7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782706|sp|B9IV96|PNP_BACCQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|206743616|gb|EDZ55042.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
           H3081.97]
 gi|217066515|gb|ACJ80765.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH187]
 gi|221241310|gb|ACM14020.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus Q1]
 gi|228585635|gb|EEK43737.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1293]
 gi|228643009|gb|EEK99285.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST26]
 gi|324327701|gb|ADY22961.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 712

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRMHILD 536

Query: 233 LQKDVISNE 241
               VI+  
Sbjct: 537 HMLSVIAEP 545



 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|326914729|ref|XP_003203675.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Meleagris gallopavo]
          Length = 864

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 88/248 (35%), Gaps = 17/248 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWI-----RN 53
           R  GR    +R+I     + K   GS L + G T +L T    ++E  V   +       
Sbjct: 439 RCDGRDLTSLRDIKCEVNMFKMLHGSALFQRGQTQVLCTVTFDSIESSVKSDLISTAVSG 498

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   V+ R+ G       +  RAL+ V+         I 
Sbjct: 499 IKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHG----ALAERALKPVIPQDF--PFTIR 552

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  V K  +      +     
Sbjct: 553 VTSEVLESNGSSSMASACGGSLALMDAGVPVSSAVAGVAVGLVTKYDLEGRD--LEDYRL 610

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +            +  A     +++++
Sbjct: 611 LTDILGIEDYYGDMDFKMAGTSKG-VTALQVDLKLPGIPIKIIMEAIQQATAAKREILQI 669

Query: 234 QKDVISNE 241
             + ++  
Sbjct: 670 MNETLAKP 677



 Score = 78.6 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 84/202 (41%), Gaps = 25/202 (12%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R++ L+     ++A+G+ +V+ GDT ++ TA  + K       ++   +  +Y     + 
Sbjct: 135 RKMELSSGKLARFADGAAVVQLGDTAVMVTAVSKTK----PSASQFMPLVVDYRQKAAAA 190

Query: 71  GNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126
           G R+    +    G   +EI   R+I R++R +  +      QI+  C+++  DG     
Sbjct: 191 G-RIPTNYLRRELGTTDKEILTSRVIDRSIRPLFPVGYFYDTQIL--CNLLAVDGVNDPD 247

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI GA  AL                     G V A+  G++ G  +++    + S+  
Sbjct: 248 VLAINGASAALA-------------LSDIPWNGPVGAVRVGLVDGETVINPTRKQMSSST 294

Query: 187 VDANFVMTDSGHIVEVQGSAER 208
           ++          +V ++ +AE 
Sbjct: 295 LNLVVAAAPQNQVVMLEATAEN 316


>gi|319794672|ref|YP_004156312.1| polyribonucleotide nucleotidyltransferase [Variovorax paradoxus
           EPS]
 gi|315597135|gb|ADU38201.1| polyribonucleotide nucleotidyltransferase [Variovorax paradoxus
           EPS]
          Length = 775

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  L   TL  +      +   G    
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVITTLGTERDAQRIDALAGEYED 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL +V+         + +  +
Sbjct: 377 RFLFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALVAVLPTKEEFPYTVRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G  +++ D    M             K HVA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLIKEDNRFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     L  AK+    ++  
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538

Query: 234 QKDVISN 240
            ++ +  
Sbjct: 539 MQEAMGE 545



 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 75/237 (31%), Gaps = 39/237 (16%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           + +    V++ A G+ LV    T +L T     + +     +     +   T   G +P 
Sbjct: 18  VVMETGEVARQANGAVLVDIDGTVILATVVASKSAKPGQDFFPLTVDYIEKTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  KREA   +         R+I R +R +     L    ++I    +  +     A
Sbjct: 77  --GSFFKREA---KPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVIHTVSLNPEVDADIA 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G   AL                     G + A   G + G  +++          +D
Sbjct: 132 AMIGVSAALSISGI-------------PFSGPIGAARVGYINGQYVLNPGQTARKDSQMD 178

Query: 189 ANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
                T +  ++   E Q  +E        F  +        A   I  +  L +D 
Sbjct: 179 LVVAGTQAAVLMVESEAQQLSEEIMLGGVVFGHEQ-------AGIAINAIHDLVRDA 228


>gi|224540971|ref|ZP_03681510.1| hypothetical protein CATMIT_00122 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526122|gb|EEF95227.1| hypothetical protein CATMIT_00122 [Catenibacterium mitsuokai DSM
           15897]
          Length = 712

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 88/249 (35%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +     GS +   G+T +L   T  A  E +    +     
Sbjct: 318 VRPDGRKVDEVRPLDAQVDLLPRVHGSAMFTRGETQVLSACTLGALGEVQKIDGLGMEDQ 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P   G   +     G  G R      +  RALR V+         I +  
Sbjct: 378 KRFMHHYNFPPYCVGETGR----MGSPGRREIGHGALGERALRQVIPSETEFPYTIRVVA 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I  + +AL                   +   VA ++ G++       
Sbjct: 434 EVLESNGSSSQASICASTMALMAAGV-------------PISNPVAGVAMGLVKKGENYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I  +Q   +    +++     L  AK     ++ 
Sbjct: 481 ILTDIQGMEDHLGDMDFKVAGTKNG-ICALQMDIKIDGITKEILQEALAQAKVARGQIMD 539

Query: 233 LQKDVISNE 241
                IS  
Sbjct: 540 CMMSAISEP 548



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 86/232 (37%), Gaps = 28/232 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
           +I +    ++K A GSCLV++ DT +L         + V  +     +       G +P 
Sbjct: 14  KIQVEVGEMAKQANGSCLVRYDDTVVLSTACAGKEPKDVDFFPLTVTYEEKLYSVGKIP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR         RMI R +R +         Q++     +  +     A
Sbjct: 73  --GGFLKRE---GRPSEHGTLTARMIDRPIRPLFADGFRNEVQVVNTVLSVDQEATPEMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA +AL                     G +A ++ G++ G   V+    ED     +
Sbjct: 128 AMLGASIALC-------------ISDIPFNGPIAGVNVGLIDGEFTVN-AGPEDM-ARSE 172

Query: 189 ANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            N  V      I  V+  A+     ++     L    ++I +LI  Q+ ++ 
Sbjct: 173 INLEVAGTKDAINMVEADAKE--VDEETMLNALMFGHEKIKELIAFQEQIVE 222


>gi|315452709|ref|YP_004072979.1| polyribonucleotide nucleotidyltransferase [Helicobacter felis ATCC
           49179]
 gi|315131761|emb|CBY82389.1| polyribonucleotide nucleotidyltransferase [Helicobacter felis ATCC
           49179]
          Length = 679

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 21/243 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKHG 57
           R  GR    +R IS+   +  +  GS L   G T   ++ T        +   +      
Sbjct: 307 RPDGRGFETIRPISIETNLLPHCHGSALFTRGHTQALVVCTVGGPNDAKLQENLDGLHKE 366

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      A   R+ G       +   AL+  +  S    + I +  +
Sbjct: 367 RFMFHYNFPPFSVGEATPLSAPGRREIGHG----NLAKCALQGSILES---DQTIRLVSE 419

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +++++G +  A++ G  +AL+     ++       +  +++G   AI         + D+
Sbjct: 420 ILESNGSSSMASVCGGSLALYASGIKLKSLIAGVAMGLIIQGEETAI---------LSDI 470

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D        G +V +Q   + A  S      +L  AK+    +++  +  
Sbjct: 471 SALEDMQGDMDFKIAGNLEG-VVALQMDTKIAGLSLALLSQILQQAKEARGAILECMEQA 529

Query: 238 ISN 240
           I  
Sbjct: 530 IEG 532



 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 20/166 (12%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   G+         R I R+LR +         QI +   V+  D        
Sbjct: 66  GGFNKRE---GKLSEFETLTSRAIDRSLRPLFAKDYAHPTQITL--LVLSHD-------- 112

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
                 L  C  H    +       +   +VAA+  G + G  + + +  E      D N
Sbjct: 113 --QQSDLQVCALHAAANALYLANLGI--ENVAAVRVGRIGGKIVYNPNATELQKS--DLN 166

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD-LIKLQK 235
             ++ +   + +     + +  +     +L  A+  I +  ++ QK
Sbjct: 167 LYVSGTSEALLMVEMHSQESLPEATLLDLLEKAQKHIRENCLQFQK 212


>gi|148651980|ref|YP_001279073.1| polynucleotide phosphorylase/polyadenylase [Psychrobacter sp.
           PRwf-1]
 gi|187611275|sp|A5WBT2|PNP_PSYWF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148571064|gb|ABQ93123.1| Polyribonucleotide nucleotidyltransferase [Psychrobacter sp.
           PRwf-1]
          Length = 704

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 93/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59
           R+ GR  + +R + +   V  Y  GS L   G+T  L T TL     + + ++  G I  
Sbjct: 320 RIDGRDLDTVRALDIQVGVLPYTHGSALFTRGETQALVTTTLGNSRDVNLIDSLAGTIQD 379

Query: 60  --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +      R+ G      R+  R +++++  S      I +  +
Sbjct: 380 HFMLHYNFPHYSVGETGREGVPKRREIGHG----RLARRGVQAMLPDSDRFPYVIRVVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 LK  VA I+ G++        
Sbjct: 436 ITESNGSSSMASVCGASLALMDAGV-------------PLKAPVAGIAMGLVKEGDRFAV 482

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    + D     L  A      ++  
Sbjct: 483 LSDILGDEDHLGDMDFKVAGTKDG-ITALQMDIKIEGITSDIMEKALEQAHAGRIHILNA 541

Query: 234 QKDVI 238
             +V+
Sbjct: 542 MNEVL 546



 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 73/243 (30%), Gaps = 50/243 (20%)

Query: 13  EISLTRRVSKYAEGSCLVKFG------------DTHLLTTATLEEKVPMWIRNTKHGWIT 60
           ++ +          S LV  G            D          E    +     +    
Sbjct: 17  QVVIETGRIARQANSVLVHMGGVSVLVAVVVKSDAK--------EGQNFFPLTVNYQEKM 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
              G +P + G R       GR         R+I R +R +     +   QI     VI 
Sbjct: 69  YAAGKIPGAYGKR------EGRPTEFETLTSRLIDRPIRPLFPEGYVNEIQITAT--VIS 120

Query: 121 ADGGTRT--AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +D       AA+ GA  AL                     G +     G + G  +++  
Sbjct: 121 SDKKHYADIAAMIGASAALS-------------ISDAPFNGPIGGARVGFINGEYVLNPS 167

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQ 234
             E  + D+D     T S  ++     +E A  S+D     +    ++    I ++ +L 
Sbjct: 168 IEELKSSDLDLVVAGTKSAVLMV---ESEAAELSEDQMLGAVLYGHEQQQIVIDNIAELA 224

Query: 235 KDV 237
           K V
Sbjct: 225 KAV 227


>gi|299530738|ref|ZP_07044153.1| polynucleotide phosphorylase/polyadenylase [Comamonas testosteroni
           S44]
 gi|298721254|gb|EFI62196.1| polynucleotide phosphorylase/polyadenylase [Comamonas testosteroni
           S44]
          Length = 747

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 93/247 (37%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  +TL  +        +      
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTERDAQKIDALAGEFED 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +         I +  +
Sbjct: 377 RFLFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALAACLPTKEEFPYTIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G  +++ D    M             K HVA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLIKEDNKFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     L  AK+    ++  
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538

Query: 234 QKDVISN 240
            ++ +  
Sbjct: 539 MQEAMGE 545



 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 75/232 (32%), Gaps = 31/232 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           +++    +++ A G+ LV   DT +L T       +     +     +   T   G +P 
Sbjct: 18  VTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKAGQDFFPLTVDYIEKTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  KREA   +         R+I R +R +          ++I    +  +     A
Sbjct: 77  --GSFFKREA---KPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTISLNPEVDADIA 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+     AL                     G + A   G + G  +++    +     +D
Sbjct: 132 AMIATSAALAVSGI-------------PFSGPIGAARVGYINGEYVLNPGQTQRKDSQMD 178

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKD 236
                T+S  ++     +E     ++     +       K  I  +  L ++
Sbjct: 179 LVVAGTESAVLMV---ESEALQLPEEVMLGAVVFGHEQGKIAIDAIHDLVRE 227


>gi|171695618|ref|XP_001912733.1| hypothetical protein [Podospora anserina S mat+]
 gi|170948051|emb|CAP60215.1| unnamed protein product [Podospora anserina S mat+]
          Length = 277

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 87/255 (34%), Gaps = 26/255 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-------------- 46
           +R+ GR+ N++R I    R    A+GS  ++ G T ++   T   +              
Sbjct: 13  LRVDGRRWNELRRIHGQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGGAAGGASG 72

Query: 47  VPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA 106
                  +K   +     +   S+ +        GR   R+ E+Q  +   L + +    
Sbjct: 73  GAGSGGQSKDAEVVVNIVIAGFSSVD----RKRRGRGDKRTLEMQFTLSNTLAATLHTHL 128

Query: 107 LGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC 166
               QI I   V+  DG    A I  A +A  D    M D            G  +  + 
Sbjct: 129 FPHSQINISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVTACTA-----GSTSTYAA 183

Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                 P++DL++ E+  +       + +S  +V +      +         ML +  D 
Sbjct: 184 NDEGADPLLDLNHQEEQELPGLTVATLGESDKVVALVC---ESRVQISRLEGMLAVGVDG 240

Query: 227 IADLIKLQKDVISNE 241
              + ++   VI  +
Sbjct: 241 CKQVREILDQVIKAQ 255


>gi|323697461|ref|ZP_08109373.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp. ND132]
 gi|323457393|gb|EGB13258.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio
           desulfuricans ND132]
          Length = 753

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 92/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHG- 57
           +R+ GR    +R +S+   V +   GS L + G+T  L TATL        +        
Sbjct: 321 LRIDGRNTTTVRPLSIEVGVLQQTHGSALFRRGETCSLATATLGSTRDEQRYDSLLGDAT 380

Query: 58  -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P   G        S R+ G       +  RAL  V+         I +  
Sbjct: 381 KRFMLHYNFPPYCVGEARMLRGPSRREVGHG----ALAERALTPVIPDPENFPFTIRVVS 436

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++++++G +  A++ GA ++L D                 +   VA I+ G+        
Sbjct: 437 EIMESNGSSSMASVCGATLSLMDAGV-------------PISDPVAGIAMGLCKEGDQYF 483

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G I  +Q   + A   QD     L  AK+    ++ 
Sbjct: 484 VLTDILGDEDALGDMDFKVAGTRDG-ITAIQMDIKIAGIPQDVLKKALQQAKEARTHILD 542

Query: 233 LQKDVISNE 241
              +VI+  
Sbjct: 543 HMAEVIAKP 551



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 85/240 (35%), Gaps = 37/240 (15%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           +I+L     ++ A G+  +  GDT +L TA           +     +T  Y  +  + G
Sbjct: 19  DITLETGKYARQASGAVTISSGDTTVLVTAV----TQPLAEDRGFFPLTCNYQEMAYAAG 74

Query: 72  ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
               N  +RE   GR   R   + R+I R +R +         QII    V+ AD     
Sbjct: 75  RVPGNYFRREV--GRPSERETLVSRLIDRPIRPLFAKGFTDEVQIIAT--VLSADKRVNP 130

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY--GEDS 183
              A+TGA  A H                    G +     G +    ++   Y   E+ 
Sbjct: 131 DVLALTGASAACH-------------ISKMPFLGPIVGARVGYVDNEFVLYPSYKGIEER 177

Query: 184 TIDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           +     N +   +   +V V+G       S+D     L    +++  L  +Q + +  +V
Sbjct: 178 SS---LNLIFAATRDAMVMVEGGG--NFVSEDLVADALAWGHEQVRPLFDIQDE-LREKV 231


>gi|264677193|ref|YP_003277099.1| 3' exoribonuclease [Comamonas testosteroni CNB-2]
 gi|262207705|gb|ACY31803.1| 3' exoribonuclease [Comamonas testosteroni CNB-2]
          Length = 747

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 93/247 (37%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  +TL  +        +      
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTERDAQKIDALAGEFED 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +         I +  +
Sbjct: 377 RFLFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALAACLPTKEEFPYTIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G  +++ D    M             K HVA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLIKEDNKFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     L  AK+    ++  
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538

Query: 234 QKDVISN 240
            ++ +  
Sbjct: 539 MQEAMGE 545



 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 74/232 (31%), Gaps = 31/232 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           +++    +++ A G+ LV   DT +L T       +     +     +   T   G +P 
Sbjct: 18  VTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKAGQDFFPLTVDYIEKTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  KREA   +         R+I R +R +          ++I    +  +     A
Sbjct: 77  --GSFFKREA---KPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTISLNPEVDADIA 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+     AL                     G + A   G + G  +++          +D
Sbjct: 132 AMIAVSAALA-------------VSGLPFNGPIGAARVGYINGEYVLNPGQTLRKDSQMD 178

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKD 236
                T+S  ++     +E     ++     +       K  I  +  L ++
Sbjct: 179 LVVAGTESAVLMV---ESEALQLPEEVMLGAVVFGHEQGKIAIDAIHDLVRE 227


>gi|241763284|ref|ZP_04761341.1| Polyribonucleotide nucleotidyltransferase [Acidovorax delafieldii
           2AN]
 gi|241367559|gb|EER61846.1| Polyribonucleotide nucleotidyltransferase [Acidovorax delafieldii
           2AN]
          Length = 747

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 95/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V   A GS L   G+T  L   TL  +      +   G    
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSSLFTRGETQALVVTTLGTERDAQRIDALAGEYED 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL +V+         + +  +
Sbjct: 377 RFMLHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALAAVLPTKEEFPYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G  ++L D    M             K HVA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPM-------------KAHVAGIAMGLIKEDNRFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     L  AK+    ++  
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTAG-ITALQMDIKIQGITKEIMQVALAQAKEARIHILGK 538

Query: 234 QKDVISN 240
            +D +  
Sbjct: 539 MQDAMGE 545



 Score = 69.0 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 75/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           + +    +++ A G+ LV   DT +L T     T +     +     +   T   G +P 
Sbjct: 18  VIMETGEIARQAGGAVLVNIDDTVVLATVVASKTAKAGQDFFPLTVDYIEKTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  KREA   +         R+I R +R +          ++I    +  +     A
Sbjct: 77  --GSFFKREA---KPSEHETLTSRLIDRPIRPLFPEGFFNDVHVVIHTVSLNPEVDADIA 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+     AL                     G + A   G + G  +++          +D
Sbjct: 132 AMIATSAALAISGI-------------PFNGPIGAARVGYINGEYVLNPGQTARKNSQMD 178

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
                T++  ++     +E    S++     +          I  + +L ++ 
Sbjct: 179 LVVAGTEAAVLMV---ESEAQQLSEEIMLGAVVFGHQQGNVAINAIHELVREA 228


>gi|221068616|ref|ZP_03544721.1| Polyribonucleotide nucleotidyltransferase [Comamonas testosteroni
           KF-1]
 gi|220713639|gb|EED69007.1| Polyribonucleotide nucleotidyltransferase [Comamonas testosteroni
           KF-1]
          Length = 747

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 93/247 (37%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  +TL  +        +      
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTERDAQKIDALAGEFED 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL + +         I +  +
Sbjct: 377 RFLFHYNMPPFATGEVGRMGSTKRREIGHG----RLAKRALAACLPTKEEFPYTIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G  +++ D    M             K HVA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGVPM-------------KAHVAGIAMGLIKEDNKFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     L  AK+    ++  
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARMHILGK 538

Query: 234 QKDVISN 240
            ++ +  
Sbjct: 539 MQEAMGE 545



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 75/232 (32%), Gaps = 31/232 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           +++    +++ A G+ LV   DT +L T       +     +     +   T   G +P 
Sbjct: 18  VTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKAGQDFFPLTVDYIEKTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  KREA   +         R+I R +R +          ++I    +  +     A
Sbjct: 77  --GSFFKREA---KPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTISLNPEVDADIA 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+     AL                     G + A   G + G  +++    +     +D
Sbjct: 132 AMIAVSAALA-------------VSGLPFNGPIGAARVGYINGEYVLNPGQTQRKDSQMD 178

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADLIKLQKD 236
                T+S  ++     +E     ++     +       K  I  +  L ++
Sbjct: 179 LVVAGTESAVLMV---ESEAQQLPEEVMLGAVVFGHEQGKIAIDAIHDLVRE 227


>gi|315223620|ref|ZP_07865474.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga ochracea
           F0287]
 gi|314946401|gb|EFS98396.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga ochracea
           F0287]
          Length = 735

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 87/245 (35%), Gaps = 20/245 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +RL GR   Q+R I         A GS +   G+T  LTT TL    E  V         
Sbjct: 318 IRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTLGTSREANVIDLPSEQGE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG        S R+ G       +  RAL+ ++         + +  
Sbjct: 378 ERFYLHYNFPPFSTGEARPLRGTSRREIGHG----NLAQRALKRMIPED--CPYTVRVVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A +    +AL D    M    +   +  +  G   A+         + D
Sbjct: 432 EILESNGSSSMATVCAGTLALMDAGVQMVKPVSGIAMGLITDGERYAV---------LSD 482

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I   Q   +    S +     LN A++    ++    D
Sbjct: 483 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKIKGLSYEILEKALNQAREGRMHILGKITD 541

Query: 237 VISNE 241
            I+  
Sbjct: 542 TIAKP 546



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 81/236 (34%), Gaps = 28/236 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R I++      K A+G+ +V+ G+  LL T      +  +         +    A  G  
Sbjct: 16  RTITIETGKLAKQADGAVVVQMGNAMLLATVVSAKEINPETDFLPLTVDYREKFAAAGRF 75

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE    R   +     R++ R LR +         Q++I   +I  D    
Sbjct: 76  P---GGFFKRET---RPSDQEILTMRLVDRVLRPLFPKDYHAETQVMI--QLISHDENV- 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                     + D L  +   +          G ++ +  G + G  IV+    +    D
Sbjct: 127 ----------MPDALAGLAASACLAVSDIPFDGPISEVRVGRVNGKFIVNPSREQLEASD 176

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           +D   V      +  V+G  E    S+      +  A + I   I+ Q   ++ +V
Sbjct: 177 IDI-MVGASKDFVAMVEG--EMDEVSEKDMAEAIKFAHEAIKPHIEAQLR-LAEKV 228


>gi|307825114|ref|ZP_07655335.1| polyribonucleotide nucleotidyltransferase [Methylobacter
           tundripaludum SV96]
 gi|307733862|gb|EFO04718.1| polyribonucleotide nucleotidyltransferase [Methylobacter
           tundripaludum SV96]
          Length = 692

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR+ +++R I++   V     GS L   G+T  L  ATL  +    I +   G    
Sbjct: 312 RIDGRELDKIRPITVRTGVLPRTHGSALFTRGETQALVVATLGTQRDAQIIDALAGEYKE 371

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+         I +  +
Sbjct: 372 PFMLHYNFPPYSVGETGFVGSPKRREIGHG----RLAKRGVAAVLPNMEEFPYTIRVVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           V +++G +  A++ G+ +AL D                 +K  VA I+ G++        
Sbjct: 428 VTESNGSSSMASVCGSSLALMDAGV-------------PIKSPVAGIAMGLIKEGDSFAV 474

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    + +   + L+ AK     ++  
Sbjct: 475 LSDIMGDEDHLGDMDFKVAGSVDG-ITALQMDIKIDGITAEIMKSALDQAKHGRLHILGE 533

Query: 234 QKDVISN 240
               +S 
Sbjct: 534 MNKALST 540



 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 51/174 (29%), Gaps = 29/174 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + L    +++ A+G+ ++    T LL T                  +T  Y     + 
Sbjct: 13  RLVKLETGEIARQADGAVMIDVDGTTLLVTVVG----KKQASGGDFFPLTVNYQEKAYAA 68

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G       KRE   GR   +     R+I R +R +         QII     +  +    
Sbjct: 69  GKIPGGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGYTNEVQIIATVVSLNPE---- 121

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQL--SQVLKGHVAAISCGMLCGYPIVDLD 178
                       D        ++           G V A + G   G  I++  
Sbjct: 122 -----------VDPEIPALLGASAALAVSGLPFNGPVGAATVGYKDGEYILNPT 164


>gi|288574757|ref|ZP_06393114.1| Polyribonucleotide nucleotidyltransferase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570498|gb|EFC92055.1| Polyribonucleotide nucleotidyltransferase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 749

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 95/251 (37%), Gaps = 30/251 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEK--VPMWIRNTK 55
           R  GR+ +++R +S    V     GS +   G+T  L TAT     E+   +     N  
Sbjct: 312 RADGRKTDELRSLSCEVDVLPKVHGSAVFTRGETQSLATATLGMLGEDDQLIDGLKHNEP 371

Query: 56  HGWITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +      Y   P S G  R  R       G R      +  RAL  ++         + +
Sbjct: 372 NKSFLLHYNFPPYSVGEVRPMRG-----PGRREIGHGALAERALTPIIPDDTEFPYVVRV 426

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             D+++++G +  A+I G  +AL                   +K HVA I+ G++     
Sbjct: 427 VSDILESNGSSSQASICGGSLALMSAGV-------------PIKRHVAGIAMGLIKEGDD 473

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G +  +Q   +    +++     L  AKD    +
Sbjct: 474 VVVLTDIQGLEDHYGDMDFKVAGTREG-VTALQMDNKAGGITREILKQALGQAKDARMAI 532

Query: 231 IKLQKDVISNE 241
           + + +  ISN 
Sbjct: 533 LDVMEQAISNP 543



 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 83/229 (36%), Gaps = 31/229 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
           E+      V+K A GS   + GDT +LTTA       E +  +             G +P
Sbjct: 13  ELVFETGKVAKQANGSVWARQGDTVILTTACMTDKPREGLDFFPLLVDFEERFYSAGKIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R++RS+ +        ++     +        
Sbjct: 73  ---GGFIKRE---GRPSQTAILSARVIDRSIRSLFESWMRHDVHVVSTVLSVDQHNPPNI 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG--EDSTI 185
            AI  A  AL                     G V A+  G + G  +V+      E+S++
Sbjct: 127 LAINAASAAL-------------TISDIPWGGPVGAVRIGYIDGSLVVNPTEEMMENSSL 173

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           +     V   S  I  V+  A+     +D     + LA+  I  ++ LQ
Sbjct: 174 E---LVVSGHSDGITMVEAGAQEVP--EDLLVDAMELAQGEIKRIVDLQ 217


>gi|304414101|ref|ZP_07395469.1| polynucleotide phosphorylase/polyadenylase [Candidatus Regiella
           insecticola LSR1]
 gi|304283315|gb|EFL91711.1| polynucleotide phosphorylase/polyadenylase [Candidatus Regiella
           insecticola LSR1]
          Length = 698

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 98/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+  R ++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 315 RIDDRGKDTIRSLDMRTGVLPRTHGSALFTRGETQALVTATLGTARDAQSLDELIGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  RAL +V+         + I  +
Sbjct: 375 RFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRALLAVMPSLDDCPYTVRIVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K HVA I+ G++     + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKEHVAGIAMGLVKEGDNFVV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G I  +Q   +    ++      L+ AK  ++ ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRTG-ITALQMDIKIEGITEKIMEKALHQAKSALSHILDI 536

Query: 234 QKDVISNE 241
            ++ I   
Sbjct: 537 MEEAIKKP 544



 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 71/217 (32%), Gaps = 27/217 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           +++   +  + A  + +V   DT +  T   +++            +T  Y     + G 
Sbjct: 16  VTIETGMMARQANSAVMVSVDDTAVFVTVVGQKQAKP---GQNFFPLTVNYQERSYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              N  +RE   GR       I R+I R +R +     L   QII     I  +      
Sbjct: 73  IPGNFFRRE---GRPSEGETLISRLIDRPIRPLFPAGFLNEVQIIATVVSINKEVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    I++    E     +D
Sbjct: 130 AMIGASAALS-------------LSDIPFNGPIGAARVGFINDQYILNPTTTELVESRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                T++  ++     +E    S++     ++   +
Sbjct: 177 LVVAGTNAAVLMV---ESEAKMLSEEQMLGAVSFGHE 210


>gi|262066017|ref|ZP_06025629.1| polyribonucleotide nucleotidyltransferase [Fusobacterium
           periodonticum ATCC 33693]
 gi|291380267|gb|EFE87785.1| polyribonucleotide nucleotidyltransferase [Fusobacterium
           periodonticum ATCC 33693]
          Length = 699

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 93/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
           R+ GR   ++R +     V     GS L   G+T  L   TL  K    + +      + 
Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKSDEQLIDDLEKEYYK 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RALR V+         I +  +
Sbjct: 384 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGS----LAERALRYVIPSEEEFPYTIRVVSE 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  ++L                   +K HVA I+ G++        
Sbjct: 440 ITESNGSSSQASICGGSLSLMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 486

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T SG I  +Q   +    +++     LN A +    ++++
Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHEARQQILEV 545

Query: 234 QKDVISNE 241
             + IS  
Sbjct: 546 MNNTISKP 553



 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 85/231 (36%), Gaps = 29/231 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + ++   +S+ + G+ ++++GDT +L+TA       +    +     +       G  
Sbjct: 14  RTLKVSTGKISRQSSGAIVIQYGDTVVLSTANRSKEARKGADFFPLTVDYVEKFYSTGKF 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR    +  I R+I R +R +       +  + I   V+  D    
Sbjct: 74  P---GGFNKRE---GRPSTNATLIARLIDRPIRPMFPDGF--NYDVHIVNTVLSYD---- 121

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                   V+  D L  +              G VA ++ G   G  I++    E    +
Sbjct: 122 -------EVSTPDYLGIIGSSLALMISDIPFLGPVAGVTVGYKNGEFILNPSPAELEESE 174

Query: 187 VDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D +   T    ++VE    A      ++     +  A D I  + + Q++
Sbjct: 175 LDLSVAGTKDAVNMVE----AGAKELDEETMLKAIMFAHDNIKKICEFQEE 221


>gi|157364256|ref|YP_001471023.1| polynucleotide phosphorylase/polyadenylase [Thermotoga lettingae
           TMO]
 gi|187611328|sp|A8F725|PNP_THELT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157314860|gb|ABV33959.1| Polyribonucleotide nucleotidyltransferase [Thermotoga lettingae
           TMO]
          Length = 710

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 91/242 (37%), Gaps = 28/242 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH----LLTTATLEEKVPMWIRNTKHG 57
           RL  R+   +R I+    +     GS L   G+T     +   A ++E++   +      
Sbjct: 317 RLDMRKPKDIRPITCETGLLPRVHGSALFTRGETQSLGIVTLGAPMDEQIIDSLLEEGTK 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG        S R+ G       +  RAL+ V+         I I  +
Sbjct: 377 RFMLHYNFPPFSTGEVKPLRGPSRREIGHGH----LAERALKFVLPDEDRFPYTIRIVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           +++++G +  A +    +AL D                 +  HVA ++ G++       +
Sbjct: 433 ILESNGSSSMATVCSGSLALMDAGV-------------PISKHVAGVAMGLILEKDSQIV 479

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I   Q   + +  S D     LN AK+  A L  L
Sbjct: 480 LTDILGAEDHWGDMDFKVAGTRDG-ITAFQMDCKVSGVSADLLERALNQAKE--ARLYVL 536

Query: 234 QK 235
           +K
Sbjct: 537 EK 538



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 89/236 (37%), Gaps = 33/236 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY------- 63
           RE  +    V+K A G+ + + GDT +L TA + +     +       +T E+       
Sbjct: 11  REFIVEHGKVAKQANGAVVARIGDTTVLATAVMSDSA---VEGIDFVPLTVEFQERFYAA 67

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           G +P   G  +KRE   G+    +    R I R +R +         Q+++      +  
Sbjct: 68  GKIP---GGFIKRE---GKPSEMAILSARTIDRPIRPLFPKHLRNEVQVVVTVISTDSVN 121

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
                 +  A +AL+                    G VAA+  G++ G  ++     +  
Sbjct: 122 TPDIVGVFAASLALN-------------ISDIPFNGIVAAVRVGLVDGKIVLFPTEDQLQ 168

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
              +D     T+   I  V+G A+    S+      L  A D I  +I  +K+++S
Sbjct: 169 KSLLDIVVAGTED-TITMVEGEAKE--VSESQMLQALLKAHDAIKQIIDFEKEILS 221


>gi|125972939|ref|YP_001036849.1| polynucleotide phosphorylase/polyadenylase [Clostridium
           thermocellum ATCC 27405]
 gi|281417150|ref|ZP_06248170.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
           JW20]
 gi|187610261|sp|A3DCH7|PNP_CLOTH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|125713164|gb|ABN51656.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
           ATCC 27405]
 gi|281408552|gb|EFB38810.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
           JW20]
          Length = 700

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 83/236 (35%), Gaps = 29/236 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+ +++R +S    +     GS L   G T +L++ TL     +     I   +  
Sbjct: 312 RVDGRRLDEIRPLSAEVGLLPRVHGSGLFTRGQTQVLSSVTLGAMGDVQILDGIDTEETK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  RAL  V+         I +  +
Sbjct: 372 RYMHHYNFPGFSVGEAKSSRGPGRREIGHG----ALAERALEPVIPSEEEFPYTIRVVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
           V+ ++G T   ++ G+ +AL D                 +K  VA IS G++        
Sbjct: 428 VLMSNGSTSQGSVCGSTLALMDAGV-------------PIKKPVAGISAGLVVDENNPDR 474

Query: 174 ---IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
               +D+   ED   D+D     T  G I  +Q   +    +++       L +  
Sbjct: 475 FVTFMDIQGIEDFFGDMDFKVAGTKDG-ITAIQVDIKIDGLTEEIIKQAFELTRKG 529



 Score = 98.6 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 84/227 (37%), Gaps = 30/227 (13%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYGML 66
           R +++        A GS LV++GDT +L     +AT  E V  +  +  +       G +
Sbjct: 12  RTLTIETGKLAQLANGSVLVRYGDTVVLSTATASATPREGVDFFPLSVDYEERLYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R LR +          I+     +  D    
Sbjct: 72  P---GGFIKRE---GKPSEKAILTARVIDRPLRPLFPKDLRNDVAIVNTVLSVDQDNSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ G+ +A+                     G V A+  G++ G  I++    +     
Sbjct: 126 LAALLGSSIAVS-------------ISDIPFNGPVGAVILGLIDGEVIINPTEKQKEISQ 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +      T +  IV ++  A       D    ML+  K    ++ K+
Sbjct: 173 MYVTLAGTRN-KIVMIEAGANEVP---DEV--MLDAIKKGHEEIKKI 213


>gi|157692352|ref|YP_001486814.1| polynucleotide phosphorylase/polyadenylase [Bacillus pumilus
           SAFR-032]
 gi|187470936|sp|A8FDD7|PNP_BACP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157681110|gb|ABV62254.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus
           SAFR-032]
          Length = 705

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 86/240 (35%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR  +Q+R +S    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G            G R      +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPQFSVGE----TGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKSGEYYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G +  +Q   +    S+D     L  AK    +++ 
Sbjct: 478 VLTDIQGMEDALGDMDFKVAGTSKG-VTALQMDIKIDGLSKDILEEALQQAKKGRMEILD 536



 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 96/232 (41%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K +  +     +       G +P
Sbjct: 15  RQLTVETGQLAKQANGAVLVRYGDTAVLSSATASKEPKPLDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q+I     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  I++ +  +    D+
Sbjct: 129 AAMFGSSLALC-------------VSDIPFEGPIAGVTVGRVDGKFIINPNVEQLEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+     ++     +      I  LI+ Q++++ 
Sbjct: 176 NLVVAGTKDA-INMVEAGADEVP--EETMLEAIMYGHQEIKRLIEFQEEIVK 224


>gi|256820519|ref|YP_003141798.1| polynucleotide phosphorylase/polyadenylase [Capnocytophaga ochracea
           DSM 7271]
 gi|256582102|gb|ACU93237.1| Polyribonucleotide nucleotidyltransferase [Capnocytophaga ochracea
           DSM 7271]
          Length = 735

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 87/245 (35%), Gaps = 20/245 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +RL GR   Q+R I         A GS +   G+T  LTT TL    E  V         
Sbjct: 318 IRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTLGTSREANVIDLPSEQGE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG        S R+ G       +  RAL+ ++         + +  
Sbjct: 378 ERFYLHYNFPPFSTGEARPLRGTSRREIGHG----NLAQRALKRMIPED--CPYTVRVVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A +    +AL D    M    +   +  +  G   A+         + D
Sbjct: 432 EILESNGSSSMATVCAGTLALMDAGVQMVKPVSGIAMGLITDGERYAV---------LSD 482

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I   Q   +    S +     LN A++    ++    D
Sbjct: 483 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKIKGLSYEILEKALNQAREGRMHILGKITD 541

Query: 237 VISNE 241
            I+  
Sbjct: 542 TIAKP 546



 Score = 78.2 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 81/236 (34%), Gaps = 28/236 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R I++      K A+G+ +V+ G+  LL T      +  +         +    A  G  
Sbjct: 16  RTITIETGKLAKQADGAVVVQMGNAMLLATVVSAKEINPETDFLPLTVDYREKFAAAGRF 75

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE    R   +     R++ R LR +         Q++I   +I  D    
Sbjct: 76  P---GGFFKRET---RPSDQEILTMRLVDRVLRPLFPKDYHAETQVMI--QLISHDENV- 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                     + D L  +   +          G ++ +  G + G  IV+    +    D
Sbjct: 127 ----------MPDALAGLAASACLAVSDIPFDGPISEVRVGRVNGQFIVNPSREQLEASD 176

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           +D   V      +  V+G  E    S+      +  A + I   I+ Q   ++ +V
Sbjct: 177 IDI-MVGASKDFVAMVEG--EMDEVSEKDMAEAIKFAHEAIKPHIEAQLR-LAEKV 228


>gi|159903819|ref|YP_001551163.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9211]
 gi|226702676|sp|A9BBJ7|PNP_PROM4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|159888995|gb|ABX09209.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. MIT 9211]
          Length = 722

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 92/234 (39%), Gaps = 28/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66
           REI LT    +  A GS L++ GDT +L TAT                +  +Y       
Sbjct: 13  REIRLTTGRYAPQAGGSVLIECGDTAVLVTAT----QSPGREGADFLPLICDYEERLYAA 68

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
            R  G+ ++RE   GR   R+  I R+I R LR +         Q++  C  +     + 
Sbjct: 69  GRIPGSFMRRE---GRPPERATLISRLIDRPLRPLFPSWMRDDIQVVATCLSLDERVPSD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+T + +A                      G +AA+  G+L    +++  + E    D
Sbjct: 126 VLAVTASSMATLLA-------------EIPFYGPMAAVRVGLLGDDFVLNPSFREIERGD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +D     T  G +V ++  A +   S+      ++   + + +LIK Q+ ++  
Sbjct: 173 LDLVVAGTPDG-VVMIEAGANQ--LSEQDVIEAVDFGYEAVTELIKAQQSILKE 223



 Score = 96.7 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 91/250 (36%), Gaps = 29/250 (11%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----TK 55
           R+ GR  +++R+I     +  K   GS L + G T +L+TATL         +     + 
Sbjct: 323 RVDGRALDEVRKIEAAAGILPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPSSD 382

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I   Y   P S G          R+ G       +  RAL  V+         + + 
Sbjct: 383 KTYIH-HYNFPPYSVGETRPMRTPGRREVGHG----ALAERALIPVLPPKESFPYVLRVV 437

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V+ ++G T   ++ G+ +AL D                 LK  V+  + G++      
Sbjct: 438 SEVLSSNGSTSMGSVCGSTIALLDAGV-------------PLKAPVSGAAMGLIKEGKEI 484

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T+ G I  +Q   +            +N AK     ++
Sbjct: 485 RILTDIQGIEDFLGDMDFKVAGTEKG-ITALQMDMKVTGLEVKTIADAINQAKPARTHIL 543

Query: 232 KLQKDVISNE 241
           +   + I   
Sbjct: 544 EKMNETIDKP 553


>gi|257457660|ref|ZP_05622827.1| polyribonucleotide nucleotidyltransferase [Treponema vincentii ATCC
           35580]
 gi|257445046|gb|EEV20122.1| polyribonucleotide nucleotidyltransferase [Treponema vincentii ATCC
           35580]
          Length = 703

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 19/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR    +R I+    V     GS +   G+T  L   TL    +E+V   I   + 
Sbjct: 318 LRVDGRGLEDIRPITCEIGVLPRPHGSAVFTRGETQSLAVVTLGTVFDEQVYDDIEGDRR 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G  V R     R+ G       +  R+L  ++         I +  
Sbjct: 378 ENFILHYNFPPYSVGE-VGRLGTGRREIGHGH----LAHRSLMPMIPSREAFPYTIRVVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A + G  ++L      M+       +  +  G   A+         + D
Sbjct: 433 EILESNGSSSMATVCGGTLSLLHAGVPMKKPVAGIAMGLITDGSRFAV---------LSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I   Q   + A  S +     L  AK     ++ +   
Sbjct: 484 ILGEEDHLGDMDFKVAGTAEG-ITGFQMDIKIAGVSAEIMKKALEQAKKGRLHILGIMNQ 542

Query: 237 VISNE 241
            IS  
Sbjct: 543 TISKP 547



 Score = 78.6 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 79/224 (35%), Gaps = 26/224 (11%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           T  ++K A G+   ++G T +L T     T  E +        +       G +P   G 
Sbjct: 23  TGHLAKQANGAIYAQYGGTAVLATVCASSTAVEGLDYVPVTVDYNEKYYAAGKIP---GG 79

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KRE   GR   +   + R+I R +R +        R+I I               I+ 
Sbjct: 80  FIKRE---GRPKDKEILVSRLIDRPMRPLF--EKAFGREIQI-----------VPTCISS 123

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
             +   D L  +   +          G VA      L G  +++  + +    D++    
Sbjct: 124 DMINPPDILAVIASSAAVVISDIPFNGPVAGARVAYLDGEFVINPTFSQIEKADMEIVVA 183

Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            T  G I  V+G A     S++     L  A + I  +  LQ +
Sbjct: 184 GTAEG-ITMVEGGAHE--VSEEIMLKALEKAHEFIKAMCALQNE 224


>gi|194014349|ref|ZP_03052966.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus ATCC
           7061]
 gi|194013375|gb|EDW22940.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus ATCC
           7061]
          Length = 705

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 86/240 (35%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR  +Q+R +S    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G            G R      +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPQFSVGE----TGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKSGEYYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G +  +Q   +    S+D     L  AK    +++ 
Sbjct: 478 VLTDIQGMEDALGDMDFKVAGTSKG-VTALQMDIKIDGLSKDILEEALQQAKKGRMEILD 536



 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 96/232 (41%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K +  +     +       G +P
Sbjct: 15  RQLTVETGQLAKQANGAVLVRYGDTAVLSSATASKEPKPLDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q+I     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  I++ +  +    D+
Sbjct: 129 AAMFGSSLALC-------------VSDIPFEGPIAGVTVGRVDGKFIINPNVEQLEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+     ++     +      I  LI+ Q++++ 
Sbjct: 176 NLVVAGTKDA-INMVEAGADEVP--EETMLEAIMYGHQEIKRLIEFQEEIVK 224


>gi|302039398|ref|YP_003799720.1| polyribonucleotide nucleotidyltransferase [Candidatus Nitrospira
           defluvii]
 gi|300607462|emb|CBK43795.1| Polyribonucleotide nucleotidyltransferase [Candidatus Nitrospira
           defluvii]
          Length = 705

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 88/249 (35%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R  GR    +R I+    V   A GS +   G+T  L   TL         +   G   
Sbjct: 311 VRADGRGPADIRPITCEVGVLPRAHGSAVFTRGETQSLAVVTLGTTDDEQRIDALEGEYM 370

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      +   R+ G       +  RAL+S++         + I  
Sbjct: 371 RTFMLHYNFPPFSVGEARPLRSPGRREVGHG----ALAERALKSIIPGKDKFPYTVRIVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIV 175
           ++++++G +  A + G  +AL D                 +K  VA I+ G++  G  ++
Sbjct: 427 EILESNGSSSMATVCGGTLALLDAGV-------------PIKEPVAGIAMGLIKEGDQVL 473

Query: 176 ---DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
              D+   ED   D+D     T +G +  +Q   +    +       L  AK     ++ 
Sbjct: 474 VLSDILGLEDHLGDMDFKVTGTKNG-VTALQMDIKIGGITAGLMREALAQAKAGRLHILG 532

Query: 233 LQKDVISNE 241
                ++  
Sbjct: 533 CMAQALTEP 541



 Score = 85.9 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 84/232 (36%), Gaps = 31/232 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R ++L    ++K A+G+    +GDT +L TA      +  V        +   T   G +
Sbjct: 12  RRLTLETGRIAKQADGAIWATYGDTVVLATAVASQNAKPGVDFLPLTVDYQEKTYAAGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   R     R+I R LR +         Q+I    V+ AD    
Sbjct: 72  P---GGYFKRE---GRPSEREVLTSRLIDRPLRPLFPEGYYFETQVIAS--VLSAD---- 119

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV--DLDYGEDST 184
                     + D +  +   +     S    G +A +  G + G  +V  DL+  E S 
Sbjct: 120 -------KTGVSDVIGIIAASAALAVSSIPFNGPIAGVKIGRVNGQFVVNPDLETLETS- 171

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              D + V+  +   V +  +       +      + LA   I  ++   ++
Sbjct: 172 ---DLHLVVAGTADAVMMVEAG-ANELPEATMLEAIELAHSEIKKIVAKIEE 219


>gi|256005694|ref|ZP_05430650.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
           DSM 2360]
 gi|255990325|gb|EEU00451.1| Polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
           DSM 2360]
 gi|316940825|gb|ADU74859.1| polyribonucleotide nucleotidyltransferase [Clostridium thermocellum
           DSM 1313]
          Length = 700

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 83/236 (35%), Gaps = 29/236 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+ +++R +S    +     GS L   G T +L++ TL     +     I   +  
Sbjct: 312 RVDGRRLDEIRPLSAEVGLLPRVHGSGLFTRGQTQVLSSVTLGAMGDVQILDGIDTEETK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  RAL  V+         I +  +
Sbjct: 372 RYMHHYNFPGFSVGEAKSSRGPGRREIGHG----ALAERALEPVIPSEEEFPYTIRVVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
           V+ ++G T   ++ G+ +AL D                 +K  VA IS G++        
Sbjct: 428 VLMSNGSTSQGSVCGSTLALMDAGV-------------PIKKPVAGISAGLVVDENNPDR 474

Query: 174 ---IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
               +D+   ED   D+D     T  G I  +Q   +    +++       L +  
Sbjct: 475 FVTFMDIQGIEDFFGDMDFKVAGTKDG-ITAIQVDIKIDGLTEEIIKQAFELTRKG 529



 Score = 99.4 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 84/227 (37%), Gaps = 30/227 (13%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYGML 66
           R +++        A GS LV++GDT +L     +AT  E V  +  +  +       G +
Sbjct: 12  RTLTIETGKLAQLANGSVLVRYGDTVVLSTATASATPREGVDFFPLSVDYEERLYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R LR +          I+     +  D    
Sbjct: 72  P---GGFIKRE---GKPSEKAILTARVIDRPLRPLFPKDLRNDVAIVNTVLSVDQDNSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ G+ +A+                     G V A+  G++ G  I++    +     
Sbjct: 126 LAALLGSSIAVS-------------ISDIPFNGPVGAVILGLIDGEVIINPTEKQREISQ 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +      T +  IV ++  A       D    ML+  K    ++ K+
Sbjct: 173 MYVTLAGTRN-KIVMIEAGANEVP---DEV--MLDAIKKGHEEIKKI 213


>gi|297828842|ref|XP_002882303.1| hypothetical protein ARALYDRAFT_896385 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328143|gb|EFH58562.1| hypothetical protein ARALYDRAFT_896385 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 922

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 33/246 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKH 56
           R  GR  +++R I+    +   A GS L   G+T  L   TL +K     +     + ++
Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +  A S R+ G       +  RAL +++         I ++ 
Sbjct: 507 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGT----LAERALETILPSDDDFPYTIRVES 562

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------- 169
            VI+++G +  A++ G  +AL D                 +K  VA I+ GM+       
Sbjct: 563 TVIESNGSSSMASVCGGCLALQDAGV-------------PVKCSVAGIAMGMVWDTEEFG 609

Query: 170 -CGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             G P++  D+   ED++ D+D      + G +   Q   +    + +     L  AK  
Sbjct: 610 GDGSPLILSDITGAEDASGDMDFKVAGNEDG-VTAFQMDIKVGGITLEIMEKALIQAKAG 668

Query: 227 IADLIK 232
              ++ 
Sbjct: 669 RRHILA 674



 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 86/236 (36%), Gaps = 30/236 (12%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE--YGMLPR 68
           REI +   +  + A  +  V  G+T + T+  L + VP    +    ++  +  +  + R
Sbjct: 97  REILVETGLMGRQASSAVTVTDGETIVYTSVCLAD-VPSEPSDFLPLYVHYQERFSAVGR 155

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
           ++G   KRE   GR       I R+I R LR  +        QI+    V+  DG     
Sbjct: 156 TSGGFFKRE---GRTKDHEVLICRLIDRPLRPTMPKGFYNETQIL--SWVLSYDG----- 205

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
                 +   D L                   +A +  G++ G  IV+    E     +D
Sbjct: 206 ------LHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEESQLD 259

Query: 189 ANFVMTDSGHIVEVQGSAERAT--FSQDHFFAMLNLAKDRIA-DLIKLQKDVISNE 241
                TD+  +     + E  +    ++     + + +D +    I +  +V++ +
Sbjct: 260 LFLAGTDTAIL-----TIEGYSNFLPEEMLLEAVKVGQDAVQATCIAI--EVLAKK 308


>gi|89898059|ref|YP_515169.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila felis
           Fe/C-56]
 gi|123483690|sp|Q255L4|PNP_CHLFF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|89331431|dbj|BAE81024.1| polyribonucleotide nucleotidyltransferase [Chlamydophila felis
           Fe/C-56]
          Length = 694

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKH 56
           +R  GR    +R IS+         GSCL   G+T    + T   E     +  +     
Sbjct: 313 LRSDGRSVTTIRPISIDTSFLPRTHGSCLFTRGETQTVAVCTLGSEAMAQRYEDLNGEGL 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +     G  G R     ++  +AL   +   A     I I+ 
Sbjct: 373 AKFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHALPDPAKFPYTIRIES 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G  +AL D                 +K  +A I+ G++       
Sbjct: 429 NITESNGSSSMASVCGGCLALMDAGV-------------PIKTPIAGIAMGLILDDDHVT 475

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D        G I   Q   +    + +   A L  AK    ++++
Sbjct: 476 ILSDISGLEDHLGDMDFKVAGNAEG-ITAFQMDIKVEGITPEIMQAALAQAKSGRQNILE 534

Query: 233 LQKDVISNE 241
             K  +++ 
Sbjct: 535 TMKATLASP 543



 Score = 82.4 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 80/231 (34%), Gaps = 34/231 (14%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHL---LTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
                +++ A G+ L +  +T +   +  ATLEE V        +     ++  + ++ G
Sbjct: 18  FETGKIARQANGAVLARMQETWVFSSVCAATLEEPVDFLPLRVDYQE---KFSSIGKTLG 74

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAA 129
             +KRE   GR   R     R+I R++R  +    +   QI+        DG T     A
Sbjct: 75  GFIKRE---GRPTEREILTSRLIDRSMRPSLPNRLMQDVQILSYVW--SYDGVTLPDPIA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           I G   AL                       VA +  G +    +V+    E     ++ 
Sbjct: 130 ICGVSAALA-------------ISDIPQINIVAGVRVGFINNTWVVNPTKAEMDVSRMEL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL----QKD 236
               T+   I+ ++G      F+++     +      I  + K     QK 
Sbjct: 177 VLAGTEKA-ILMIEG--HCDFFTEEQVIEAIEFGHKHIVTICKAIEDWQKQ 224


>gi|114778695|ref|ZP_01453507.1| polyribonucleotide nucleotidyltransferase [Mariprofundus
           ferrooxydans PV-1]
 gi|114551057|gb|EAU53619.1| polyribonucleotide nucleotidyltransferase [Mariprofundus
           ferrooxydans PV-1]
          Length = 705

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 85/230 (36%), Gaps = 20/230 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR  NQ+R I     V     GS L   G+T  L T TL  +  M +  +  G    
Sbjct: 326 RIDGRATNQVRAIDCQVGVLPRTHGSALFTRGETQALVTITLGTESDMQMTESLEGVAKQ 385

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIIDC 116
                Y   P S G   +     G  G R     R+  R + +V+  +   G   I    
Sbjct: 386 RFMLHYNFPPYSVGEARRF----GPPGRREIGHGRLARRGVEAVLPSMEKFG-YAIRSVS 440

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++ +++G +  A++ G  +AL D    ++       +  +L+    A+         + D
Sbjct: 441 EITESNGSSSMASVCGTSLALMDAGVPVKAAVAGVAMGLILEQDGYAV---------LTD 491

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           +   ED   D+D     T  G +  +Q   +    +++     L  A   
Sbjct: 492 ILGDEDHLGDMDFKVAGTREG-VTTLQLDIKIGGLTREIMQEALAQAHAG 540



 Score = 85.5 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 81/234 (34%), Gaps = 34/234 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R IS     V++ A GS L + GD  +   AT   K P  ++      +T  Y     + 
Sbjct: 22  RTISFETGRVARQAGGSILAQVGDVVVHVAAT-CAKQP--LQGVDFMPLTVHYQEKTYAA 78

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G       KRE   GR   +     R+I R +R +         Q+I     +       
Sbjct: 79  GRFLGGFFKRE---GRPSEKETLTSRLIDRPIRPLFPKGYFHETQVIATVMSVDEGTNPD 135

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI G   AL                       +AA   G++ G  I++  Y + +   
Sbjct: 136 IVAINGVSAALA-------------ISDIPFAEPIAASRVGLIDGEFILNPSYEQVAESS 182

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-------IADLIKL 233
           +D     T    ++ ++  +E    S++     ++  +         I +L+KL
Sbjct: 183 LDLIVAGTRDA-VLMIE--SEAKELSEEQMIDAISFGQAGYQPVLDAIEELVKL 233


>gi|30678905|ref|NP_187021.2| RIF10 (resistant to inhibition with FSM 10); 3'-5'-exoribonuclease/
           RNA binding / nucleic acid binding / polyribonucleotide
           nucleotidyltransferase [Arabidopsis thaliana]
 gi|25991185|gb|AAN76771.1|AF450480_1 polynucleotide phosphorylase [Arabidopsis thaliana]
 gi|332640453|gb|AEE73974.1| polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana]
          Length = 922

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 33/246 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKH 56
           R  GR  +++R I+    +   A GS L   G+T  L   TL +K     +     + ++
Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +  A S R+ G       +  RAL +++         I ++ 
Sbjct: 507 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGT----LAERALETILPSDDDFPYTIRVES 562

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------- 169
            VI+++G +  A++ G  +AL D                 +K  VA I+ GM+       
Sbjct: 563 TVIESNGSSSMASVCGGCLALQDAGV-------------PVKCSVAGIAMGMVWDTEEFG 609

Query: 170 -CGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             G P++  D+   ED++ D+D      + G +   Q   +    + +     L  AK  
Sbjct: 610 GDGSPLILSDITGAEDASGDMDFKVAGNEDG-VTAFQMDIKVGGITLEIMEKALIQAKAG 668

Query: 227 IADLIK 232
              ++ 
Sbjct: 669 RRHILA 674



 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 86/236 (36%), Gaps = 30/236 (12%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE--YGMLPR 68
           REI +   +  + A  +  V  G+T + T+  L + VP    +    ++  +  +  + R
Sbjct: 97  REILVETGLMGRQASSAVTVTDGETIVYTSVCLAD-VPSEPSDFLPLYVHYQERFSAVGR 155

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
           ++G   KRE   GR       I R+I R LR  +        QI+    V+  DG     
Sbjct: 156 TSGGFFKRE---GRTKDHEVLICRLIDRPLRPTMPKGFYNETQIL--SWVLSYDG----- 205

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
                 +   D L                   +A +  G++ G  IV+    E     +D
Sbjct: 206 ------LHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEESQLD 259

Query: 189 ANFVMTDSGHIVEVQGSAERAT--FSQDHFFAMLNLAKDRIA-DLIKLQKDVISNE 241
                TD+  +     + E  +    ++     + + +D +    I +  +V++ +
Sbjct: 260 LFLAGTDTAIL-----TIEGYSNFLPEEMLLQAVKVGQDAVQATCIAI--EVLAKK 308


>gi|149182492|ref|ZP_01860966.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. SG-1]
 gi|148849823|gb|EDL63999.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. SG-1]
          Length = 706

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 82/234 (35%), Gaps = 26/234 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR  +++R ++    +     GS L   G T  L   T  A  + +V   +   + 
Sbjct: 315 LRPDGRGLDEIRPLASQVGLLPRTHGSGLFTRGQTQALSICTLGAMGDVQVIDGLGLEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G            G R      +  RAL  ++         I I  
Sbjct: 375 KRFMHHYNFPLFSVGE----TGPIRGPGRREIGHGALGERALEPIIPNEKDFPYTIRIVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLIQSGEHYS 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK  
Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIEGLSREILEEALQQAKSG 530



 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 96/233 (41%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ ++++GDT +L+TAT     + +  +     +       G +P
Sbjct: 15  RKLTVEYGQLAKQANGAVMIRYGDTAVLSTATASKQPKPLDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   R+    R+I R +R +         Q+I     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSERAVLTSRLIDRPIRPLFADGFRNEVQVISMVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A +  G++ G  I++ +  +    ++
Sbjct: 129 AAMFGSSLAL-------------TVSDIPFEGPIAGVQVGLIDGEFIINPNVDQLEKSEI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +     T    I  V+  A+     ++     +    + I  LI  Q+++ + 
Sbjct: 176 NLIVAGTKDA-INMVEAGADEVP--EETMLEAIMFGHEEIKRLISFQEEIAAQ 225


>gi|317052392|ref|YP_004113508.1| polyribonucleotide nucleotidyltransferase [Desulfurispirillum
           indicum S5]
 gi|316947476|gb|ADU66952.1| polyribonucleotide nucleotidyltransferase [Desulfurispirillum
           indicum S5]
          Length = 722

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 88/242 (36%), Gaps = 20/242 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-----TATLEEKVPMWIRNTKH 56
           R+ GR  N++R IS+         GS L   G+T  +      T + E+ V   +   + 
Sbjct: 316 RVDGRSLNEVRPISIAPSFLPRTHGSVLFTRGETQAIVVTTLGTVSDEQFVEN-LEGERR 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P   G            G R      +  RA+ +V+         I I  
Sbjct: 375 SNYMFHYNFPPYCVGE----AGFLRSPGRREIGHGALAKRAIEAVLPQGEDFPYTIRIVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++ +++G +  A++ GA +AL D    ++   +   +  +L+G   A+         + D
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPIKGAVSGIAMGLILEGDRFAV---------LTD 481

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I  +Q   +    + +   A +  A      ++    +
Sbjct: 482 ILGIEDHLGDMDFKVAGTSRG-ITSLQMDIKVEGITLEIMKAAIEQANGGRMHILDRMNE 540

Query: 237 VI 238
            +
Sbjct: 541 AL 542



 Score = 79.0 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 86/230 (37%), Gaps = 31/230 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           I +    V++ A  + +V+ GD  +L TA      +E +  +     +       G +P 
Sbjct: 13  IEMQTGQVARQASAAVVVRQGDNVILVTAVSNNEPKEGIDFFPLTVNYIEKRYSSGRIP- 71

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--R 126
             G   KRE   G        I R+I R LR +         Q+I    V+ +DG T   
Sbjct: 72  --GGFKKRE---GMPSDDETLISRLIDRPLRPLFPDGYFNETQVIAT--VMSSDGETPAD 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  ALH                    G + A   G + G  +++  Y +    D
Sbjct: 125 VLAMYGAATALH-------------ISDVPFNGPLGACRIGRIDGQFVLNPTYAQIEQSD 171

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D +   T    I+ ++  A+  +  QD   A+    +  +  L+  Q+ 
Sbjct: 172 MDISLAATRDA-ILMIEAGAKEVS-DQDILDAV-AFGQREMGRLLDAQEQ 218


>gi|7413616|emb|CAB85703.1| putative polynucleotide phosphorylase [Arabidopsis thaliana]
          Length = 922

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 33/246 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKH 56
           R  GR  +++R I+    +   A GS L   G+T  L   TL +K     +     + ++
Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +  A S R+ G       +  RAL +++         I ++ 
Sbjct: 507 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGT----LAERALETILPSDDDFPYTIRVES 562

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------- 169
            VI+++G +  A++ G  +AL D                 +K  VA I+ GM+       
Sbjct: 563 TVIESNGSSSMASVCGGCLALQDAGV-------------PVKCSVAGIAMGMVWDTEEFG 609

Query: 170 -CGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             G P++  D+   ED++ D+D      + G +   Q   +    + +     L  AK  
Sbjct: 610 GDGSPLILSDITGAEDASGDMDFKVAGNEDG-VTAFQMDIKVGGITLEIMEKALIQAKAG 668

Query: 227 IADLIK 232
              ++ 
Sbjct: 669 RRHILA 674



 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 86/236 (36%), Gaps = 30/236 (12%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE--YGMLPR 68
           REI +   +  + A  +  V  G+T + T+  L + VP    +    ++  +  +  + R
Sbjct: 97  REILVETGLMGRQASSAVTVTDGETIVYTSVCLAD-VPSEPSDFLPLYVHYQERFSAVGR 155

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
           ++G   KRE   GR       I R+I R LR  +        QI+    V+  DG     
Sbjct: 156 TSGGFFKRE---GRTKDHEVLICRLIDRPLRPTMPKGFYNETQIL--SWVLSYDG----- 205

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
                 +   D L                   +A +  G++ G  IV+    E     +D
Sbjct: 206 ------LHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEESQLD 259

Query: 189 ANFVMTDSGHIVEVQGSAERAT--FSQDHFFAMLNLAKDRIA-DLIKLQKDVISNE 241
                TD+  +     + E  +    ++     + + +D +    I +  +V++ +
Sbjct: 260 LFLAGTDTAIL-----TIEGYSNFLPEEMLLQAVKVGQDAVQATCIAI--EVLAKK 308


>gi|315638718|ref|ZP_07893892.1| polyribonucleotide nucleotidyltransferase [Campylobacter
           upsaliensis JV21]
 gi|315481342|gb|EFU71972.1| polyribonucleotide nucleotidyltransferase [Campylobacter
           upsaliensis JV21]
          Length = 736

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 88/242 (36%), Gaps = 22/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
           R  GR  N++R I +   +   A GSCL   G T  L  ATL  +    +      +N  
Sbjct: 358 RADGRNLNEVRAIEIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMVDLLSEKNPI 417

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G     +A   R+ G       +  RAL   VD +      + + 
Sbjct: 418 SERFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSVDEN--YPYVVRLV 471

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A + G  +AL               +  VL+ +  AI         + 
Sbjct: 472 SEILESNGSSSMATVCGGSLALRAAGVPSIKLVAGVAMGLVLEDNDYAI---------LT 522

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T  G I  +Q   +     ++     L  A++    ++ L +
Sbjct: 523 DIMGLEDHDGDMDFKVAGTKDG-ITALQMDIKLGGIDENILKNALYQAREARLHILDLME 581

Query: 236 DV 237
           + 
Sbjct: 582 EA 583



 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 82/241 (34%), Gaps = 41/241 (17%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVK 75
           V+K A GS L++ G + +L T   E+K            +T +Y     + G      +K
Sbjct: 38  VAKQAAGSVLMRVGKSVVLATVAREDKQ----VEEDFLPLTVQYIEKAYAVGRIPGGYIK 93

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE    + G       R+I R+LR +         QI++       +   +  ++  A V
Sbjct: 94  RET---KPGDNETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADDEVDLQVMSLNAASV 150

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
           AL+                  +K  V  +    +    +++    +     +D  +V   
Sbjct: 151 ALYLSGI-------------PIKAPVCGVRIARINDEFVLNPSNSKLKESTLDL-YVAGV 196

Query: 196 SGHIVEVQGSA-----ERATFSQDHFFAML-----------NLAKDRIADLIKLQKDVIS 239
              ++ ++  A     E     +  F   L            L++D I   + + K  I 
Sbjct: 197 KDELLMIEMRALPSESEGEAMVETSFAEALAGTSIYEQVINELSEDEILQALSVAKKAIL 256

Query: 240 N 240
           N
Sbjct: 257 N 257


>gi|256072702|ref|XP_002572673.1| ribonuclease pH related [Schistosoma mansoni]
 gi|238657836|emb|CAZ28905.1| ribonuclease pH related [Schistosoma mansoni]
          Length = 258

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 75/200 (37%), Gaps = 17/200 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHGWIT 60
           R+ GR+ N++R +      S Y++G   +  G+T ++ +        +          IT
Sbjct: 10  RVDGRRPNEIRRVDCQFG-SGYSDGIVFLHQGNTKVIASVVGPHAPRVKGDGTPDGATIT 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            ++   P ++ +  +R+  S  +   + +    I      V+        QI I  +VIQ
Sbjct: 69  CQFTKPPFASTSGERRKLSS--KDRSANDFATAIEEIFSCVIRTEKYPMSQIDIFLEVIQ 126

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           +DG     A+    +AL D    M                V+A + G+   +   DL   
Sbjct: 127 SDGSEFACAVNATTLALTDAGIEM-------------DCLVSAATVGLWGSHVFADLCRF 173

Query: 181 EDSTIDVDANFVMTDSGHIV 200
           E++        V   + H++
Sbjct: 174 EENPRISQLTVVCLPNVHLL 193


>gi|213961824|ref|ZP_03390090.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sputigena
           Capno]
 gi|213955613|gb|EEB66929.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sputigena
           Capno]
          Length = 744

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 87/245 (35%), Gaps = 20/245 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +RL GR   Q+R I         A GS +   G+T  LTT TL    E  V         
Sbjct: 318 IRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTLGTSREANVIDLPSEQGE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG        S R+ G       +  RAL+ ++         + +  
Sbjct: 378 ERFYLHYNFPPFSTGEARPLRGTSRREIGHG----NLAQRALKRMIPED--CPYTVRVVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A +    +AL D    M    +   +  +  G   A+         + D
Sbjct: 432 EILESNGSSSMATVCAGTLALMDAGVQMVKPVSGIAMGLITDGERYAV---------LSD 482

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I   Q   +    S +     LN A++    ++    D
Sbjct: 483 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKIKGLSYEILEKALNQAREGRMHILGKITD 541

Query: 237 VISNE 241
            I+  
Sbjct: 542 TIAQP 546



 Score = 78.6 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 78/228 (34%), Gaps = 27/228 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R I++      K A+G+ +V+ G+  LL T      +  +         +    A  G  
Sbjct: 16  RTITIETGKLAKQADGAVVVQMGNAMLLATVVSAKEINPETDFLPLTVDYREKFAAAGRF 75

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KREA   R   +     R++ R LR +         Q++I   +I  D    
Sbjct: 76  P---GGFFKREA---RPSDQEILTMRLVDRVLRPLFPKDYHAETQVMI--QLISHDENV- 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                     + D L  +   +          G ++ +  G + G  IV+    +    D
Sbjct: 127 ----------MPDALAGLAASACLAVSDIPFDGPISEVRVGRVNGQFIVNPSREQLEASD 176

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           +D   V      +  V+G  E    S+      +  A + I   I+ Q
Sbjct: 177 IDI-MVGASKDFVAMVEG--EMDEVSEKDMAEAIKFAHEAIKPHIEAQ 221


>gi|224476402|ref|YP_002634008.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254782735|sp|B9DPE0|PNP_STACT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|222421009|emb|CAL27823.1| polyribonucleotide nucleotidyltransferase [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 701

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 94/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +   A GS L   G T  L+     A  E ++   +   + 
Sbjct: 318 VRPDGRKPDEIRPLDSEVGLLPRAHGSGLFTRGQTQALSVLTLGAMSEYQLIDGLGTEEE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RALR ++  +      + I  
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALRYIIPDTKDFPYTVRIVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           +V++++G +  A+I G+ +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTRDDNYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T+ G I  +Q   +    +++     L  A+     ++ 
Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTEKG-ITAIQMDIKIDGLTREIIEEALEQARVGRLTILN 539

Query: 233 LQKDVISNE 241
              + I   
Sbjct: 540 HMLETIDQP 548



 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 89/232 (38%), Gaps = 28/232 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +S+    ++K A G+ LV++GDT +L+TAT          +     +       G +P
Sbjct: 15  RPLSIETGQMAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLMVNYEEKMYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R +         QII        D     
Sbjct: 75  ---GGFKKRE---GRPADEATLTARLIDRPIRPLFPKGYRHDVQIINMVLSADPDCSPEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  +++    +     +
Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGEYVINPTVEQKEVSRL 175

Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D       D+ ++VE    A  +  ++      +    + I  L+  Q+++I
Sbjct: 176 DLEVAGHRDAVNMVE----AGASEITEKEMLDAIFFGHEEIKRLVDFQQEII 223


>gi|149204437|ref|ZP_01881404.1| polynucleotide phosphorylase/polyadenylase [Roseovarius sp. TM1035]
 gi|149142322|gb|EDM30369.1| polynucleotide phosphorylase/polyadenylase [Roseovarius sp. TM1035]
          Length = 713

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 93/248 (37%), Gaps = 27/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +++R I     +     GS L   G+T  L   TL         +  HG   +
Sbjct: 318 RIDGRRLDEIRPIVCETGLLPRTHGSSLFTRGETQALVVTTLGTGDDEQFIDALHGNFKS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G      ++  RAL++V+  +      + +  +
Sbjct: 378 NFLLHYNFPPYSVGEAGRVGAPGRREIGHG----KLAWRALQAVLPPATDFPYTVRLVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           + +++G +  A++ G  +++ D                 LK  VA ++ G++        
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKTSVAGVAMGLVLEEDGSFA 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + A  + +     L  AK     ++ 
Sbjct: 481 ILSDILGDEDHLGDMDFKVAGTADG-ITSLQMDIKVAGITPEIMKKALEQAKAGRLHILG 539

Query: 233 LQKDVISN 240
                +S 
Sbjct: 540 EMNKALSG 547



 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 74/223 (33%), Gaps = 33/223 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A+G+ +   G+T ++   T     +     +     +       G +P 
Sbjct: 16  LTLETGKIARQADGTVIATLGETSVMANVTFAKEAKPGQDFFPLTVHYQEKYYAAGKVP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +           ++ C V+  D      
Sbjct: 75  --GGFFKREA---RPSEKETLTARLIDRPIRPLFVPGFKHET--LVMCTVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD----YGED 182
             A+     AL                     G +A    G + G  I++ +    +   
Sbjct: 128 IVALIATSAALTISGA-------------PFMGPIAGCRVGFVDGEYILNPEIDDMHDLR 174

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
           +  +   + V+  +   V +  S E    +++     +  A +
Sbjct: 175 NNPEQRLDLVVAGTKDAVMMVES-EAYELTEEEMLGAVTFAHE 216


>gi|89070994|ref|ZP_01158217.1| polyribonucleotide nucleotidyltransferase [Oceanicola granulosus
           HTCC2516]
 gi|89043457|gb|EAR49672.1| polyribonucleotide nucleotidyltransferase [Oceanicola granulosus
           HTCC2516]
          Length = 710

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 95/243 (39%), Gaps = 17/243 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +++R I    ++     GS L   G+T  L   TL       I +  HG   +
Sbjct: 318 RIDGRALDEVRPIVSETQILPRTHGSALFTRGETQALVVTTLGTGDDEQIIDALHGNFRS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+  +      I +  +
Sbjct: 378 NFLLHYNFPPYSVGEAGR----VGPPGRREIGHGKLAWRALQAVLPPATDFPYTIRLVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +++ D    ++       +  VL+      S G+     + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLED---DGSYGI-----LTDI 485

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   + A  + +     L  AK     ++      
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMKKALEQAKAGRMHILGEMAKA 544

Query: 238 ISN 240
           I+ 
Sbjct: 545 ITE 547



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 81/231 (35%), Gaps = 33/231 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A+G+ +   G+T ++   T     +E    +     +       G +P 
Sbjct: 16  LTLETGKIARQADGTVIATLGETSVMAAVTFAKTQKEGQDFFPLTVHYQEKYYAAGKVP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++ C V+  D      
Sbjct: 75  --GGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE----D 182
             A+  A  AL                     G +A    G   G  +++    +     
Sbjct: 128 IVAMIAASAALTISGA-------------PFMGPIAGCRVGYEDGEYVLNPTVDDMQGLR 174

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +  D   + V+  +   V +  S E    +++     +  A ++I  ++ L
Sbjct: 175 NNPDQRLDLVVAGTKDAVMMVES-EAYELTEEEMLGAVTFAHEQIQPVVDL 224


>gi|304310511|ref|YP_003810109.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           HdN1]
 gi|301796244|emb|CBL44452.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           HdN1]
          Length = 701

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 98/255 (38%), Gaps = 33/255 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHG 57
           R+ GR    +R IS+         GS L   G+T  + TATL          ++   +  
Sbjct: 316 RIDGRDNKTVRPISIEVGNLARTHGSALFTRGETQAIVTATLGSMRDSQTVDYLEGARSE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G    +     R+ G      R+  R +++V+  ++     I +  +
Sbjct: 376 PFMLHYNFPPFCVGETGGQLGPKRREIGHG----RLARRGIQAVLPENSAFPYAIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G+ +AL D                 LK  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PLKAPVAGIAMGLVKEGDRFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR------- 226
           + D+   ED   D+D     T  G +  +Q   +    +++     LN A+D        
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTAKG-VTALQMDIKIDGITEEIMEVALNQARDGRLHILGE 537

Query: 227 IADLIKLQKDVISNE 241
           +A +I+  +  +S +
Sbjct: 538 MAKVIEASRPALSRD 552



 Score = 75.5 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 73/232 (31%), Gaps = 31/232 (13%)

Query: 15  SLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG-- 71
           +L    +++ A G+ LV      +L T   ++K      +     +T  Y     ++G  
Sbjct: 17  TLETGKIARQATGAVLVSTAQVAVLVTVVGKKKADP---SKDFFPLTVNYQEKTYASGRI 73

Query: 72  --NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
                KRE   G+   +     R+I R LR +         QII              AA
Sbjct: 74  PGGYFKRE---GKPSEKETLTSRLIDRPLRPLFPEGFRNEVQIIATVLSTDKKTDPDIAA 130

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + GA  AL                     G + A   G + G  +++  Y       +D 
Sbjct: 131 LVGASAALAISGI-------------PFNGPIGAARVGFVDGSYVLNPCYAALEKSSLDL 177

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
               TD   ++     +E    ++D     +          I  +    K+V
Sbjct: 178 VVAGTDQAVLMV---ESEAKELTEDQMLGAVLYGHQEMQVAIEAINAFAKEV 226


>gi|319760252|ref|YP_004124190.1| polyribonucleotide nucleotidyltransferase [Candidatus Blochmannia
           vafer str. BVAF]
 gi|318038966|gb|ADV33516.1| polyribonucleotide nucleotidyltransferase [Candidatus Blochmannia
           vafer str. BVAF]
          Length = 697

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 95/255 (37%), Gaps = 33/255 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           +RL GR ++ +REI +   V     GS L   G+T  L   TL  +        +   + 
Sbjct: 315 LRLDGRSQDMIREIDIKIGVLPRTHGSALFTRGETQALVAVTLGTERNAQNLDELTGDRV 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P   G      A   R+ G      R+  R + +V+  S      I +  
Sbjct: 375 DRFLMHYNFNPYCVGEIGIVGAPKRREIGHG----RLAKRGMLAVMPDSNEFPYTIRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++ +++G +  A+I GA +AL D                 +K  VA ++ G++       
Sbjct: 431 EITESNGSSSMASICGASLALMDAGV-------------PIKESVAGVAMGLIKEENEFV 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN---LAKDRI-- 227
            + D+   ED   D+D        G I  +Q   +    + +     L    LA+ +I  
Sbjct: 478 VLSDIISDEDHIGDMDFKVAGGKQG-ITALQMDIKINGITYEIIHVALEKSKLARLKILN 536

Query: 228 --ADLIKLQKDVISN 240
               +IK+ +  IS 
Sbjct: 537 FMEQVIKIPRKNISE 551



 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 68/205 (33%), Gaps = 26/205 (12%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPRSTGNRVK 75
           +++ A  S +V   DT +L T    ++V      +     +   T   G  P   G   +
Sbjct: 23  IARQANASVMVSMDDTTVLVTVVGSDQVKIDQDFFPLVVNYQERTYAAGKFP---GGFFR 79

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE   GR         R+I R +R +         QII     +         AI GA  
Sbjct: 80  RE---GRPSESEILTARLIDRPIRPLFPKGFYNDVQIIATVVSVNPQISPDIVAIIGASA 136

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
           AL                     G +     G +    +++    E +   +D     T+
Sbjct: 137 ALS-------------LSDIPFLGPIGVARVGYINNQYVLNPTISELANSKLDLVISGTE 183

Query: 196 SGHIVEVQGSAERATFSQDHFFAML 220
           S +I+ V+  +E +  S+      +
Sbjct: 184 S-NILMVE--SESSLLSEKEILNAI 205


>gi|188583695|ref|YP_001927140.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium populi
           BJ001]
 gi|226702662|sp|B1ZGS7|PNP_METPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|179347193|gb|ACB82605.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium populi
           BJ001]
          Length = 745

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 90/241 (37%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     V   A GS L   G+T  L  ATL         +   G    
Sbjct: 316 RIDGRDVKTVRPIVSEVGVLPRAHGSSLFTRGETQALVVATLGTGEDEQFIDALEGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R V+  +      I +  +
Sbjct: 376 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPVLPPAHEFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L D    +        +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     TD G I  +Q   + A  +++     L  AKD  A ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTDEG-ITSLQMDIKIAGITEEIMRVALAQAKDGRAHILGEMAQA 541

Query: 238 I 238
           +
Sbjct: 542 L 542



 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 79/236 (33%), Gaps = 38/236 (16%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R++ L    + + A+G+ +  +G+T +L T  +  K P          +T  Y     + 
Sbjct: 14  RKLVLETGKTARQADGAVVATYGETTVLATV-VAAKEPK--AGIDFMPLTVNYQERAYAA 70

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G       KRE   GR   +   + R+I R +R +         Q+++       +    
Sbjct: 71  GRIPGGYFKRE---GRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             ++  A  AL                     G + A   G L G   ++    E +   
Sbjct: 128 IVSMVAASAAL-------------TLSGVPFMGPIGAARVGYLNGGYKLNPLVTEVAEST 174

Query: 187 VDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLN----LAKDRIAD 229
           +D     T    ++ V+  A+  +         F   HF  ++     LA+    +
Sbjct: 175 LDLVVAGTQDA-VLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKE 229


>gi|87200495|ref|YP_497752.1| polynucleotide phosphorylase/polyadenylase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|123736106|sp|Q2G5F5|PNP_NOVAD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|87136176|gb|ABD26918.1| Polyribonucleotide nucleotidyltransferase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 772

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 92/243 (37%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR   Q+R I           GS L   G+T  + T TL     E++   +   ++ 
Sbjct: 315 RIDGRTTTQVRPIEAIVGFLPRTHGSSLFTRGETQAICTTTLGTKDAEQMIDGLEGLRYE 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G      ++  RAL  V+         I I  D
Sbjct: 375 NFMLHYNFPPYSVGEVGRFGAPGRREVGHG----KLAWRALHPVLPTKEEFPYTIRILSD 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +++ D    ++   +   +  +L+G   A+         + D+
Sbjct: 431 ITESNGSSSMATVCGGCLSMMDAGVPVKRPVSGIAMGLILEGDKFAV---------LSDI 481

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   + A  +++ F   L  A +  A ++      
Sbjct: 482 LGDEDHLGDMDFKVAGTSEG-ITTMQMDIKVAGITREIFEVALRQASEGRAHILGEMTKA 540

Query: 238 ISN 240
           +  
Sbjct: 541 LGE 543



 Score = 81.7 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 80/224 (35%), Gaps = 28/224 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           ++L    +++ A+G+ L  +G+T +L   T  + V           +T  Y     S   
Sbjct: 16  LTLETGRIARQADGAVLATYGETVVLCAVTAAKSV---KEGQDFFPLTVHYQ-EKYSAAG 71

Query: 73  RVKREAVSGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TA 128
           R+        +G   +E  + R+I R +R +          I +   V+  DG T     
Sbjct: 72  RIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNE--INVIAQVLSYDGETEPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST-IDV 187
           A+  A  AL                     G +AA   G + G  +++    +D    D 
Sbjct: 130 AMIAASAAL-------------TISGVPFMGPIAAARVGFIEGEYVLNP--KQDVALADG 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + V+  +   V +  S E    S+D     +  A D I  +I
Sbjct: 175 RLDLVVAATDTAVMMVES-EAKELSEDEMLGAVLFAHDEIKKVI 217


>gi|83945015|ref|ZP_00957381.1| polyribonucleotide nucleotidyltransferase [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851797|gb|EAP89652.1| polyribonucleotide nucleotidyltransferase [Oceanicaulis alexandrii
           HTCC2633]
          Length = 709

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 93/247 (37%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  +Q+R I     V     GS L   G+T  L   TL           +  T   
Sbjct: 317 RIDGRSLDQVRPIVSEATVLPRTHGSALFTRGETQALAVVTLGTGEDEQFIDALTGTYKE 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R A   R+ G      ++  RAL +V+  +      + +  +
Sbjct: 377 RFLLHYNFPPYSVGETSFRLAPGRREIGHG----KLAWRALNAVMPNAETFPYTVRLVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A + G  +AL D                 +   V+ I+ G++    G  +
Sbjct: 433 ITESNGSSSMATVCGGSLALMDAGV-------------PITRPVSGIAMGLIKDPEGVAV 479

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G +  +Q   + A  ++D     LN AK     +++ 
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTEEG-VTSLQMDIKIAGITKDIMQTALNQAKGGRMHILEE 538

Query: 234 QKDVISN 240
               +S 
Sbjct: 539 MNKALSG 545



 Score = 79.0 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 77/227 (33%), Gaps = 27/227 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R ++L      + A G+ L  +G+T +L TA     ++  V  +     +       G +
Sbjct: 14  RTLTLETGRMARQANGAVLATYGETTVLATAVAQKDVKPGVDFFPLTVNYQEKYFAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +     R+I R +R +         Q++I       +    
Sbjct: 74  P---GGYFKRE---GRPTDKETLTSRLIDRPIRPLFPKGFKNDTQVMITVLSHDLENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              + GA  AL                     G + A   G   G  I++    E    +
Sbjct: 128 VVGMIGASAALCLSGL-------------PFLGPIGAARVGYKDGEYIINPTVAEMDDTE 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +D     T S  ++ V+  +E    S++     +    +    +I +
Sbjct: 175 LDLVVAGT-SDAVMMVE--SEAKELSEETMLGAVMAGHEAFQPVIDM 218


>gi|293510045|ref|ZP_06668753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M809]
 gi|291466989|gb|EFF09507.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M809]
          Length = 580

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +     GS L   G T  L+     A  + ++   +   + 
Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RAL+ ++  +A     I I  
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALKYIIPDTADFPYTIRIVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G +  A+I G+ +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G I  +Q   +    +++     L  A+    +++ 
Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMN 539

Query: 233 LQKDVISNE 241
                I   
Sbjct: 540 HMLQTIDQP 548



 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 28/232 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ LV++GDT +L+TAT          +     +       G +P
Sbjct: 15  RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR G  +    R+I R +R +         QI+        D   + 
Sbjct: 75  ---GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  I++    E     +
Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRL 175

Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D       D+ ++VE    A  +  ++      +    + I  L+  Q+ ++
Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITEQEMLEAIFFGHEEIQRLVDFQQQIV 223


>gi|307721696|ref|YP_003892836.1| polyribonucleotide nucleotidyltransferase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979789|gb|ADN09824.1| polyribonucleotide nucleotidyltransferase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 726

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 88/243 (36%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT--TATLEEKVPMWIRNTKHG- 57
           +R  GR+  ++R I++   V   A  SCL   G T  L   T    +   M+   T  G 
Sbjct: 344 VRADGRKLTEIRPITIDTNVLPAAHSSCLFTRGQTQALVVLTMGGPKDAQMFEGLTDEGT 403

Query: 58  ---WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y     S G          R+ G       +  RAL  ++DL     + + +
Sbjct: 404 QNENFMVHYNFPGFSVGEASPVMGTKRRELGHG----NLAKRALEPIIDLD---GQTVRL 456

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++++++G +  A + G ++AL        D      +  V  G   AI         +
Sbjct: 457 VSEILESNGSSSMATVCGGYMALRAADIETSDTVAGIAMGMVSDGERYAI---------L 507

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED   D+D     +  G I  +Q   +    S +     L  AK+  A +I + 
Sbjct: 508 SDIMGLEDHDGDMDFKVTGSKEG-ITAMQMDIKLGGISLNILKEALYQAKEGRAHIIDIM 566

Query: 235 KDV 237
            D 
Sbjct: 567 LDA 569



 Score = 68.2 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 69/208 (33%), Gaps = 24/208 (11%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRV 74
            V+K A GS  +K G T +L T  ++E     I       +T +Y     + G       
Sbjct: 20  DVAKQANGSAWIKSGKTVILATVVIDETE---IVKDDFLPLTVQYIEKTYAAGKIPGGFF 76

Query: 75  KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
           KRE    +         R++ R+LR +         QI I   V  AD            
Sbjct: 77  KRET---KPSDFETLTSRIVDRSLRPLFPKGFGHPTQITI--MVFSAD-----------S 120

Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT 194
            +    L      +  F     +   V A+    + G  I++    +     +D     T
Sbjct: 121 ESDMQVLALNAASAALFTSDIDVNSSVCAVRAAKVDGELILNPTLTQLKNSSLDLYLSGT 180

Query: 195 DSGHI-VEVQGSAERATFSQDHFFAMLN 221
               + +E++         +D +  ML+
Sbjct: 181 KDDLLMIEMRSIGSEKVEVEDTYEPMLD 208


>gi|224531821|ref|ZP_03672453.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia valaisiana
           VS116]
 gi|224511286|gb|EEF81692.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia valaisiana
           VS116]
          Length = 722

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 27/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR  N++R+I     +     GS L   G+T  L       +++E++   I   K 
Sbjct: 315 IRTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G    R     R+ G       +  RAL S+V         I +  
Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++++++G +  A +    ++L                   +K  VA I+ G++       
Sbjct: 430 EILESNGSSSMATVCAGSMSLMSAGV-------------PVKRQVAGIAMGLISEGDKYV 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I   Q   +    +++     L  A+     ++ 
Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKNLMRDALEQARVGRIHILS 535

Query: 233 LQKDVISN 240
           +   VIS+
Sbjct: 536 IMDAVISD 543



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 87/240 (36%), Gaps = 32/240 (13%)

Query: 5   GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59
           GR  +++        +  K A GS L  +G + +L T      + E +     + ++   
Sbjct: 10  GR--DEL---VFETGLMAKQANGSVLATYGGSSVLATVCCSSNVREDLDFVPLSVEYNEK 64

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
               G +P   G  +KRE   G+   +   + R+I R +R + D       Q+I      
Sbjct: 65  YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
                     +  A+ A+             F       G +AA+    L G  IV+  +
Sbjct: 119 DQLNPPDIVGMNAAFTAV-------------FLSDIPFSGPIAAVRMVYLNGEFIVNPSF 165

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            E    D+D   V      I  V+G A     S+D   + ++ A + I  +   QK+ + 
Sbjct: 166 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VSEDILLSAIDGAHEYIKQICNAQKEFLE 222


>gi|219854675|ref|YP_002471797.1| hypothetical protein CKR_1332 [Clostridium kluyveri NBRC 12016]
 gi|219568399|dbj|BAH06383.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 715

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 16/244 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           R+ GR+ +++R IS        A G+ L   G T ++T  TL     + I +        
Sbjct: 319 RVDGREFDEVRPISCEVGFLPRAHGTGLFTRGLTQVMTVVTLGSLGDVQILDGVGLEDSK 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     STG          R+ G       +  +AL  ++ +       I +  +
Sbjct: 379 RYMHHYNFPSYSTGEVRPLRGPGRREIGHG----ALAEKALEPLIPMEEQFPYTIRLVSE 434

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A+I G+ +AL D    ++  +    +  V    ++           + D+
Sbjct: 435 VLSSNGSTSQASICGSTLALLDAGVPIKRPAAGIAMGLVTSEDLS-------QEEILTDI 487

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   +    S       L  A+     +++  K  
Sbjct: 488 QGLEDFFGDMDFKVGGTEKG-ITAIQFDTKIHGLSNKCIKETLEKARTARLYILEKMKQC 546

Query: 238 ISNE 241
           I   
Sbjct: 547 IPEH 550



 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 78/216 (36%), Gaps = 26/216 (12%)

Query: 29  LVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQG 84
           L+ +GDT +L  A       E +  +  + ++       G +P   G  +KRE   G+  
Sbjct: 37  LISYGDTVVLINANASDKPREGIDFFPLSIEYEERLYSVGKIP---GGFIKRE---GKPS 90

Query: 85  GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM 144
            ++    R I R LR +         Q++     +  D      A+ GA +AL       
Sbjct: 91  EKAILNARAIDRPLRPLFPKGYRNDVQVVCTVLSVDQDNLPNIVAMNGASLALC------ 144

Query: 145 EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
                    S      V +++ G++ G  I++ +  +     ++     T    ++ V+ 
Sbjct: 145 -------ISSIPFITPVGSVAVGLVDGNFIINPNLEDREKSTLNLTVCATKE-RVMMVEA 196

Query: 205 SAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            A      +D  +  +    +    +   Q++V+  
Sbjct: 197 GACEVP--EDIMYDAIIFGFEECKKIALFQEEVMKK 230


>gi|153954062|ref|YP_001394827.1| polynucleotide phosphorylase/polyadenylase [Clostridium kluyveri
           DSM 555]
 gi|189037304|sp|A5N848|PNP_CLOK5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096734|sp|B9E1K8|PNP_CLOK1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146346943|gb|EDK33479.1| Pnp [Clostridium kluyveri DSM 555]
          Length = 708

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 16/244 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           R+ GR+ +++R IS        A G+ L   G T ++T  TL     + I +        
Sbjct: 312 RVDGREFDEVRPISCEVGFLPRAHGTGLFTRGLTQVMTVVTLGSLGDVQILDGVGLEDSK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     STG          R+ G       +  +AL  ++ +       I +  +
Sbjct: 372 RYMHHYNFPSYSTGEVRPLRGPGRREIGHG----ALAEKALEPLIPMEEQFPYTIRLVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A+I G+ +AL D    ++  +    +  V    ++           + D+
Sbjct: 428 VLSSNGSTSQASICGSTLALLDAGVPIKRPAAGIAMGLVTSEDLS-------QEEILTDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   +    S       L  A+     +++  K  
Sbjct: 481 QGLEDFFGDMDFKVGGTEKG-ITAIQFDTKIHGLSNKCIKETLEKARTARLYILEKMKQC 539

Query: 238 ISNE 241
           I   
Sbjct: 540 IPEH 543



 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 78/216 (36%), Gaps = 26/216 (12%)

Query: 29  LVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQG 84
           L+ +GDT +L  A       E +  +  + ++       G +P   G  +KRE   G+  
Sbjct: 30  LISYGDTVVLINANASDKPREGIDFFPLSIEYEERLYSVGKIP---GGFIKRE---GKPS 83

Query: 85  GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM 144
            ++    R I R LR +         Q++     +  D      A+ GA +AL       
Sbjct: 84  EKAILNARAIDRPLRPLFPKGYRNDVQVVCTVLSVDQDNLPNIVAMNGASLALC------ 137

Query: 145 EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
                    S      V +++ G++ G  I++ +  +     ++     T    ++ V+ 
Sbjct: 138 -------ISSIPFITPVGSVAVGLVDGNFIINPNLEDREKSTLNLTVCATKE-RVMMVEA 189

Query: 205 SAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            A      +D  +  +    +    +   Q++V+  
Sbjct: 190 GACEVP--EDIMYDAIIFGFEECKKIALFQEEVMKK 223


>gi|159900395|ref|YP_001546642.1| polynucleotide phosphorylase/polyadenylase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|257096698|sp|A9B8G1|PNP_HERA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|159893434|gb|ABX06514.1| Polyribonucleotide nucleotidyltransferase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 777

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 95/251 (37%), Gaps = 30/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR+ N++R I++   V     GS L   G T +LT ATL        R    G  T
Sbjct: 320 IRVDGRKVNEIRPIAVDVGVLPRVHGSGLFTRGQTQVLTVATLGSPGDEQ-RLDDLGIET 378

Query: 61  AE-----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     STG          R  G      ++  RAL  V+         + + 
Sbjct: 379 TRHYMHHYNFPAFSTGEARPSRGPRRRDIGHG----KLAERALVPVLPEKDKFPYTMRLV 434

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            +V+ ++G +  A++ G+ +AL D                 +K  VA ++ G++ G    
Sbjct: 435 SEVLASNGSSSMASVCGSSLALMDAGV-------------PIKAPVAGVAMGLITGKEAG 481

Query: 173 ---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T +G I  +Q   +    + +        A+     
Sbjct: 482 QFSVLTDIQGLEDALGDMDFKVAGTTAG-ITALQMDIKTTGITYEIMQQAFEQARQGRVF 540

Query: 230 LIKLQKDVISN 240
           ++    ++I+ 
Sbjct: 541 ILDKMNEIINT 551



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 81/235 (34%), Gaps = 28/235 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V++ A G+ LV++GDT LL   T      + +  +     +       G +
Sbjct: 16  RPLTIEAGRVAQLANGAVLVRYGDTVLLAAVTASAEPRDGIDFFPLTVDYEEKMYAAGKI 75

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+  KRE   GR    +    R+  R LR +         Q+ I            
Sbjct: 76  P---GSFFKRE---GRPTETAILTSRLTDRPLRPLFPKGYYNDVQVSITTLSTDQVNDPG 129

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI GA  AL                       V A+  G + G   V+   G      
Sbjct: 130 PLAIIGASAALV-------------ISDIPFAAPVGAVQMGHIDGVFAVNPVMGLMENSR 176

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           +D     T    ++ V+ SA     ++      +    + +  +I+ Q + ++ +
Sbjct: 177 LDLVVAGTSEA-VMMVEASAYE--LTEAEMLEAVKRGHEAMQAVIQAQLE-LAEK 227


>gi|73993245|ref|XP_534492.2| PREDICTED: similar to Exosome complex exonuclease RRP43 (Ribosomal
           RNA processing protein 43) (Exosome component 8) (p9)
           (Opa-interacting protein 2) isoform 1 [Canis familiaris]
          Length = 276

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 88/257 (34%), Gaps = 25/257 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P        G++  
Sbjct: 23  RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEFAAPP-TDAPDKGYVVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115
              + P  +         SG  G  +Q   + I   +    ++    L    G    ++ 
Sbjct: 82  NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLSWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
           CD+  +  DG    A       AL +             + + + K +    ++ H  A 
Sbjct: 137 CDIICLDYDGNILDACTFALLAALKNAQLPEVTINEETGLAEVNLKKKSYLNIRTHPVAT 196

Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           S  +      IVD    E+         VM + G +  +      +  +       ++ A
Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255

Query: 224 KDRIADLIKLQKDVISN 240
             R  ++ KL  +VI +
Sbjct: 256 VTRHKEVKKLMDEVIKS 272


>gi|330836568|ref|YP_004411209.1| Polyribonucleotide nucleotidyltransferase [Spirochaeta coccoides
           DSM 17374]
 gi|329748471|gb|AEC01827.1| Polyribonucleotide nucleotidyltransferase [Spirochaeta coccoides
           DSM 17374]
          Length = 705

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 90/246 (36%), Gaps = 17/246 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-----TATLEEKVPMWIRNTK 55
           +R  GR+ + +R I+    +     GS L   G+T  L      TA+ E+          
Sbjct: 316 VRTDGRKVDDIRPITCEVGLLPMTHGSALFTRGETQSLAVTTLGTASDEQMFDTIDGEKS 375

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P S G    R +   R+ G       +  RAL+++V         + + 
Sbjct: 376 FSSFMLHYNFPPYSVGE-TGRLSTGRREIGHGH----LAQRALQAIVPPKEKFPYTVRVV 430

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A++ G  ++L D    ++       +  + +G   A          + 
Sbjct: 431 SEIMESNGSSSMASVCGGCLSLMDAGVPIKKPVAGIAMGLITEGEDYARYV------VLS 484

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T+ G I   Q   + A  + +     L+ AK     ++ +  
Sbjct: 485 DILGEEDHLGDMDFKVAGTEDG-ITAFQMDIKIAGVTPEIMSKALDQAKRGRLHILDVMG 543

Query: 236 DVISNE 241
             +   
Sbjct: 544 KTLKTP 549



 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 84/222 (37%), Gaps = 30/222 (13%)

Query: 25  EGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQG 84
           EGS ++      +   A   E +     + ++       G +P   G  +KREA   R  
Sbjct: 36  EGSAIIAT----VCCGAAPSEPLDYVPLSVEYNEKYYAAGKIP---GGFLKREA---RPK 85

Query: 85  GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM 144
            +   + R+I R +R + D  A G R+I I   V+ +D                D +   
Sbjct: 86  DKEILVSRLIDRPMRPLFD-KAFG-REIQIVPTVVSSD-----------QANQPDIIAIN 132

Query: 145 EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
              +          G + A+   ++ G  I++  + + +   +D     T  G I  V+G
Sbjct: 133 AASAAVMISDIPFAGPIGAVRIALVDGDYIINPTFQQTAQAQLDIVVSGTRDG-ITMVEG 191

Query: 205 SAERATFSQDHFFAMLNLAKDRIADL----IKLQKDVISNEV 242
            A+    S++     +  A+  I  L    I+LQK V   ++
Sbjct: 192 GAKE--VSEEVMLKAIAAAQPVITALCDAQIELQKIVGKEKL 231


>gi|328953964|ref|YP_004371298.1| Polyribonucleotide nucleotidyltransferase [Desulfobacca acetoxidans
           DSM 11109]
 gi|328454288|gb|AEB10117.1| Polyribonucleotide nucleotidyltransferase [Desulfobacca acetoxidans
           DSM 11109]
          Length = 711

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 89/248 (35%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R IS    +     GS L   G+T  L  ATL    +E+    +      
Sbjct: 324 RIDGRSYTDIRPISCEVGLLSRTHGSALFSRGETQALAVATLGTVSDEQRIETLTGDTFK 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G        S R+ G       +  RAL  V+         I +  +
Sbjct: 384 AFMLHYNFPPYSVGETRMLRGPSRREIGHG----ALAERALSRVLPQPEEFPYTIRVVSE 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           ++ ++G +  A + G  +A+ D                 +K  VA ++ G++        
Sbjct: 440 ILSSNGSSSMATVCGGSLAMMDAGI-------------PIKAPVAGVAMGLIKEENNIAI 486

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     L+ A++    ++  
Sbjct: 487 LSDILGDEDHLGDMDFKVAGTAAG-ITALQMDIKIGGINREIMSQALHQAREARLHILSR 545

Query: 234 QKDVISNE 241
             + I   
Sbjct: 546 MNEAIDQP 553



 Score = 85.5 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 27/220 (12%)

Query: 23  YAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78
            A G+   ++GDT +L TA     L E +        +  ++   G +P   G   +RE 
Sbjct: 35  QASGAVFARYGDTGVLVTAVASDRLREGIDFLPLTVDYLEMSYAAGRIP---GGFFRREI 91

Query: 79  VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138
             GR   +     R+I R +R +         QII     +  +      A+ GA  AL 
Sbjct: 92  --GRPSEKETLTSRLIDRPIRPLFPKGFFHELQIIATVLSVDMENDPDIIALNGASAALA 149

Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN-FVMTDSG 197
                              +G +AA+  G + G  +V+         +   N  V   + 
Sbjct: 150 -------------ISDIPFQGPIAAVRMGKVGGELMVNPTIS--QLKESTLNLIVAGSND 194

Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            +V V+G AE A  S++     L  A   +  +++LQ+ +
Sbjct: 195 ALVMVEGGAELA--SEEEILEALFTAHAEMQPILRLQEQM 232


>gi|255264847|ref|ZP_05344189.1| polyribonucleotide nucleotidyltransferase [Thalassiobium sp. R2A62]
 gi|255107182|gb|EET49856.1| polyribonucleotide nucleotidyltransferase [Thalassiobium sp. R2A62]
          Length = 711

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 98/248 (39%), Gaps = 27/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR+ +++R+I     +     GS L   G+T  L  ATL       + +   G    
Sbjct: 318 RIDGRKTDEVRDIVCETGLLPRTHGSALFTRGETQGLVVATLGTGDDEQMIDALQGMYRS 377

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+  +      I +  +
Sbjct: 378 NFMLHYNFPPYSVGEVGRF----GPPGRREIGHGKLAWRALQAVLPAATDFPYTIRLVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGY-- 172
           + +++G +  A++ G  +++ D                 LK  VA ++ G++    G   
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLVLEDDGDYA 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T++G I  +Q   + A  + D     L  AK+    ++ 
Sbjct: 481 ILTDILGDEDHLGDMDFKVAGTEAG-ITSLQMDIKVAGITPDIMEKALAQAKEGRLHILG 539

Query: 233 LQKDVISN 240
                IS+
Sbjct: 540 EMNKSISS 547



 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 82/231 (35%), Gaps = 33/231 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+GS +  +G+T ++   T     +     +     +       G +P 
Sbjct: 16  LTLETGKVARQADGSVIATYGETSVMANVTFAKKQKPGQDFFPLTVHYNEKYYAAGKVP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++ C V+  D      
Sbjct: 75  --GGFFKREA---RPTEKETLTSRLIDRPIRPLFVPGF--KNEVLVICTVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV--DLDYGEDST 184
             A+  A  AL                     G ++A   G   G  I+  +LD   D  
Sbjct: 128 MVAMIAASAALTISGA-------------PFMGPISACRVGFEDGEYILNPELDDMHDLR 174

Query: 185 --IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
              +   + V+  +   V +  S E    +++     +  A ++I   I L
Sbjct: 175 NKPEQRLDLVVAGTKDAVMMVES-EAYELTEEEMLGAVKFAHEQIQTPIDL 224


>gi|225630576|ref|YP_002727367.1| Polyribonucleotide nucleotidyltransferase [Wolbachia sp. wRi]
 gi|254782747|sp|C0R3T4|PNP_WOLWR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225592557|gb|ACN95576.1| Polyribonucleotide nucleotidyltransferase [Wolbachia sp. wRi]
          Length = 757

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 97/249 (38%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTA---TLEEKVPMWIRNTKH 56
           +R+ GR+ +++R+I +   +     GS L   G+T  L  TA   T +E++   I   + 
Sbjct: 310 VRIDGRKHDEIRQIEVEVDILSKTHGSALFTRGNTQALVVTALGTTQDEQIVDDIEGDRR 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     + G      + +   G R     ++  +A+  V+   +     I +  
Sbjct: 370 EHFMLHYNFPSFAVGE----TSAARAPGRREIGHGKLAWKAIHPVLPDKSEFPYTIRVVS 425

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +++++DG +  A + G  +AL D                 +K  VA I+ G++       
Sbjct: 426 EILESDGSSSMATVCGTSLALMDTGV-------------PIKAPVAGIAMGLIKDKDEYV 472

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   + +  S +     L  AK     +++
Sbjct: 473 ILSDILGDEDYLGDMDFKVAGTSEG-VTALQMDMKISGISFEIVEKSLEQAKAGRLHILE 531

Query: 233 LQKDVISNE 241
               VIS  
Sbjct: 532 KMNAVISEH 540



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 89/232 (38%), Gaps = 31/232 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R +SL    +++ A GS +V +GDT +L T      EE V     N +   I   Y M  
Sbjct: 14  RTLSLETGKIARQAHGSVVVNYGDTSVLVTVVSKKKEENVDFLPLNVQF--IAKSYAMGK 71

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125
              G   KRE   G+   R   I R+I R++R +          I + C+++  D     
Sbjct: 72  IP-GGFFKRE---GKPSDRETLISRVIDRSIRPLFPEGFHDE--ISVVCNLLTYDTVNPP 125

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDYGEDST 184
              A+ GA  AL                       +A +  G       I++    E   
Sbjct: 126 EVPALIGAVAALA-------------ISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKA 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             +D  F+  D   I+ V+  +E    S+++ F  +    + +  +IKL K+
Sbjct: 173 SSLDL-FLSGDENSILMVE--SEVKELSEENVFNAIKFGHEHLKPVIKLIKE 221


>gi|15644097|ref|NP_229146.1| polynucleotide phosphorylase/polyadenylase [Thermotoga maritima
           MSB8]
 gi|170289273|ref|YP_001739511.1| polyribonucleotide nucleotidyltransferase [Thermotoga sp. RQ2]
 gi|81553535|sp|Q9X166|PNP_THEMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226704827|sp|B1LBY0|PNP_THESQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|4981905|gb|AAD36416.1|AE001789_1 polynucleotide phosphorylase [Thermotoga maritima MSB8]
 gi|170176776|gb|ACB09828.1| Polyribonucleotide nucleotidyltransferase [Thermotoga sp. RQ2]
          Length = 708

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56
           +R  GR+  ++R IS    +     GS L   G+T  L   TL   + + I +T      
Sbjct: 316 IRADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPMDVQIIDTLLEEGV 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P  TG        S R+ G       +  RAL++++         I +  
Sbjct: 376 KRFMLHYNFPPFCTGEVKPLRGPSRREIGHGH----LAERALKNMLPPEEEFPYTIRVVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++++++G +  A +    +AL D                 +K HVA I+ G++       
Sbjct: 432 EILESNGSSSMATVCSGSLALMDAGV-------------PIKKHVAGIAMGLILEEDAEI 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I   Q   + +  S +     L  A++    ++ 
Sbjct: 479 ILTDIIGMEDHYGDMDFKVAGTRDG-ITAFQMDCKVSGVSDELLMKALMQAREARMYILD 537

Query: 233 LQKDVIS 239
              + IS
Sbjct: 538 RMYETIS 544



 Score = 96.3 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 94/238 (39%), Gaps = 35/238 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY------- 63
           RE+ +    V+K + GS LV+FGDT +L TA + +K    +       +T E+       
Sbjct: 11  RELVVQYGKVAKQSSGSALVRFGDTVVLATANISDKA---VEGIDFVPLTVEFQERFYAA 67

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           G +P   G  +KRE   G+    +    R+I R +R +         Q+I+    +  + 
Sbjct: 68  GKIP---GGFIKRE---GKPSESAILSARLIDRPIRPLFPKKLRNEVQVIVTVLSVDPNV 121

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED- 182
                 I  A +AL+                   +G VA I  G   G  I  L   ED 
Sbjct: 122 PPDVVGIFAASLALN-------------VSKIPFEGIVAGIRVGYRDGQFIA-LPSEEDI 167

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
               +D     T    +  V+G A+    +++     L  A   I +L+  Q++++S 
Sbjct: 168 EKGLMDITVAGTKDA-VTMVEGEAKE--VTEEDMVKALRFAHSVIKELVDFQEEILSE 222


>gi|154497054|ref|ZP_02035750.1| hypothetical protein BACCAP_01347 [Bacteroides capillosus ATCC
           29799]
 gi|150273453|gb|EDN00581.1| hypothetical protein BACCAP_01347 [Bacteroides capillosus ATCC
           29799]
          Length = 716

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 89/234 (38%), Gaps = 27/234 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           R+ GR +N++R +S    V     GS L   G T +L+ ATL         +T    +  
Sbjct: 322 RVDGRAKNEIRPLSAEVGVLPKVHGSGLFTRGQTQVLSVATLNTLAASQKLDTIWEEEEK 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      + + R+ G       +  RAL  V+         I +  +
Sbjct: 382 RYMHHYNFPPYSVGEAKAPRSTNRREYGHG----ALAERALVPVLPSVDEFPYAIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-----Y 172
           V+ ++G T   +I G+ +AL D                 +K  VA ISCG++        
Sbjct: 438 VLSSNGSTSQGSICGSTLALMDAGV-------------PIKAPVAGISCGLIQDDDGSFQ 484

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             +D+   ED   ++D     T +G I  +Q   +    + +     L + KD 
Sbjct: 485 TFIDIQGVEDFHGEMDFKVAGTKAG-ITAIQMDLKNDGLTHEIIKQALEITKDA 537



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 65/204 (31%), Gaps = 25/204 (12%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R  S+    +   A  + LV++GDT +     +     + V  +  +          G +
Sbjct: 23  RPFSIEVGKTAELANAAALVRYGDTTVHVAICVSPRPRDGVDFFPLSVDFEEKLYAVGRI 82

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+ ++RE   GR    +    R+I R +R +          I      +  D    
Sbjct: 83  P---GSFMRRE---GRPSLPAVLASRLIDRPIRPLFPYDFRNDVCITCTVMSVDYDCSPE 136

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G    L                     G +  +  G   G  + +    +  T  
Sbjct: 137 VTAMIGVSACLSY-------------SEIPFAGPIGCLEVGYCDGEIVFNPTQEQRKTSR 183

Query: 187 VDANFVMTDSGHIVEVQGSAERAT 210
           +D     T+   +V ++  A++  
Sbjct: 184 MDVTVAATEK-KVVMIEAGADQIP 206


>gi|84500513|ref|ZP_00998762.1| polyribonucleotide nucleotidyltransferase [Oceanicola batsensis
           HTCC2597]
 gi|84391466|gb|EAQ03798.1| polyribonucleotide nucleotidyltransferase [Oceanicola batsensis
           HTCC2597]
          Length = 712

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 93/242 (38%), Gaps = 21/242 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R+I +   +     GS L   G+T  L   TL       I +  HG   +
Sbjct: 318 RIDGRALDQVRQIEVETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQIIDALHGNFRS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+  +      I +  +
Sbjct: 378 NFLLHYNFPPYSVGEAGR----VGPPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--PIV 175
           + +++G +  A++ G  +++ D    ++       +  VL+            G    + 
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAAVAGVAMGLVLED----------DGEFAILT 483

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T++G I  +Q   + A  + +     L  AKD    ++    
Sbjct: 484 DILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMKKALAQAKDGRMHILGEMN 542

Query: 236 DV 237
             
Sbjct: 543 KA 544



 Score = 78.6 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 82/232 (35%), Gaps = 35/232 (15%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+GS +   G+T ++   T     +     +     +       G +P 
Sbjct: 16  LTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQEKYYAAGKVP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++ C V+  D      
Sbjct: 75  --GGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI- 185
             A+  A  AL                     G +A    G + G  +++ D  ED    
Sbjct: 128 IVAMIAASAALTISGA-------------PFMGPIAGCRVGYVDGDYVLNPD-VEDMNGL 173

Query: 186 ----DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
               +   + V+  +   V +  S E    ++D     +  A ++I  +I L
Sbjct: 174 RNNPEQRLDLVVAGTKDAVMMVES-EAYELTEDEMLGAVTFAHEQIQPVIDL 224


>gi|320104995|ref|YP_004180586.1| polyribonucleotide nucleotidyltransferase [Isosphaera pallida ATCC
           43644]
 gi|319752277|gb|ADV64037.1| polyribonucleotide nucleotidyltransferase [Isosphaera pallida ATCC
           43644]
          Length = 766

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 91/243 (37%), Gaps = 30/243 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR    +R IS    +   A GS L + G+T  L T  L    +E+    I +   
Sbjct: 330 LRSDGRGPKDLRPISCEVGLLPKAHGSALFQRGETQALVTTVLGTAADEQRIDGIMDEYT 389

Query: 57  GWITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                +Y M   + G  R  R       G R      +  R++  V+   A     I + 
Sbjct: 390 KKFMLDYNMPSFAVGEVRPIRG-----PGRREIGHGALAERSVAPVLPDPARFPYTIRVV 444

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            D+++++G +  A++ GA ++L D                 +   V  IS G++   P  
Sbjct: 445 SDILESNGSSSMASVCGATLSLMDAGV-------------PISDPVGGISIGLVWDEPTD 491

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED   D+D     T  G +  +Q   +    S       L+ A +   +
Sbjct: 492 RFVLLTDIIGDEDHYGDMDFKVAGTQRG-VTGIQLDLKNLGISPRIVRETLDQALEARME 550

Query: 230 LIK 232
           +++
Sbjct: 551 ILR 553



 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 78/220 (35%), Gaps = 29/220 (13%)

Query: 22  KYAEGSCLVKFGDTHLLT---TATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78
           K A GS +V+ G T  L    TA   E +  +    ++       G  P   G  +KRE 
Sbjct: 36  KQATGSVVVQVGGTMSLVAVVTAPGREGLDFFPLQVEYREKVYAAGKFP---GGFIKRE- 91

Query: 79  VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTRTAAITGAWVA 136
             GR   +     R+I R +R +         QI      I AD        ++ GA  A
Sbjct: 92  --GRPTTKDILTSRLIDRPIRPLFPEWYRDEVQIQAS--PISADRINDPDVLSMIGASAA 147

Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
           L                     G V +I  G + G  +      E    D+D     T S
Sbjct: 148 LCLT-------------PAPFLGPVGSIRVGRIDGRLVPLPTAEEMEQSDLDLVVASTTS 194

Query: 197 GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             IV ++G  +    S + F A++  A +    +I LQ +
Sbjct: 195 -KIVMIEGFGQELPES-EMFDAIMK-AHEYNQAVIALQHE 231


>gi|121535268|ref|ZP_01667082.1| Polyribonucleotide nucleotidyltransferase [Thermosinus
           carboxydivorans Nor1]
 gi|121306153|gb|EAX47081.1| Polyribonucleotide nucleotidyltransferase [Thermosinus
           carboxydivorans Nor1]
          Length = 699

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 94/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R IS    + +   GS L   G T +LT     A  +E++   +   + 
Sbjct: 310 VRPDGRKLDEIRPISCEVGLLRRTHGSGLFTRGQTQVLTVTTLGAIGDEQILDGLGVEES 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         I +  
Sbjct: 370 KRYMHHYNFPAFSVGETRPARGPGRREIGHG----ALAERALLPVIPPETEFPYTIRLVS 425

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T   ++ G+ ++L D                 +K  V+ ++ G++       
Sbjct: 426 EVLESNGSTSMGSVCGSTLSLMDAGV-------------PIKAPVSGVAMGLVKEGDHYT 472

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G +  +Q   + +  +++     L  A+     ++ 
Sbjct: 473 ILTDIQGIEDALGDMDFKVAGTAKG-VTAIQMDIKISGITKEILADALEQARRGRLFILD 531

Query: 233 LQKDVISNE 241
              +VI   
Sbjct: 532 KMLEVIKEP 540



 Score = 81.7 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 83/234 (35%), Gaps = 27/234 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +      K A G+ L+++GDT +L TAT      + +  +     +       G +
Sbjct: 11  RALVVETGKMAKQANGAVLIRYGDTAVLVTATASAEPRQGIDFFPLTVDYEERLYSVGKI 70

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR    +    R+I R +R +          ++     +  D    
Sbjct: 71  P---GGFIKRE---GRPSEAAILAGRLIDRPIRPLFAEGFRNDVHVVATVLSVDQDNPPD 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                     G +  +  G + G  I++    +    D
Sbjct: 125 IPAMIGASCALS-------------ISDIPFNGPIGGVRVGRVDGQFIINPTVEQQERSD 171

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ++     T    ++ V+  A      ++     +    D I +++  Q+ +++ 
Sbjct: 172 LNLVVAGTKDA-VLMVEAGANEVP--EEAILDAITFGHDVIREIVAFQEKIVAE 222


>gi|6006870|gb|AAF00646.1|AC009540_23 putative polynucleotide phosphorylase [Arabidopsis thaliana]
 gi|6091752|gb|AAF03462.1|AC009327_1 putative polynucleotide phosphorylase [Arabidopsis thaliana]
          Length = 948

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 33/246 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKH 56
           R  GR  +++R I+    +   A GS L   G+T  L   TL +K     +     + ++
Sbjct: 473 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 532

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +  A S R+ G       +  RAL +++         I ++ 
Sbjct: 533 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGT----LAERALETILPSDDDFPYTIRVES 588

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------- 169
            VI+++G +  A++ G  +AL D                 +K  VA I+ GM+       
Sbjct: 589 TVIESNGSSSMASVCGGCLALQDAGV-------------PVKCSVAGIAMGMVWDTEEFG 635

Query: 170 -CGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             G P++  D+   ED++ D+D      + G +   Q   +    + +     L  AK  
Sbjct: 636 GDGSPLILSDITGAEDASGDMDFKVAGNEDG-VTAFQMDIKVGGITLEIMEKALIQAKAG 694

Query: 227 IADLIK 232
              ++ 
Sbjct: 695 RRHILA 700



 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 86/236 (36%), Gaps = 30/236 (12%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE--YGMLPR 68
           REI +   +  + A  +  V  G+T + T+  L + VP    +    ++  +  +  + R
Sbjct: 123 REILVETGLMGRQASSAVTVTDGETIVYTSVCLAD-VPSEPSDFLPLYVHYQERFSAVGR 181

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
           ++G   KRE   GR       I R+I R LR  +        QI+    V+  DG     
Sbjct: 182 TSGGFFKRE---GRTKDHEVLICRLIDRPLRPTMPKGFYNETQIL--SWVLSYDG----- 231

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
                 +   D L                   +A +  G++ G  IV+    E     +D
Sbjct: 232 ------LHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEESQLD 285

Query: 189 ANFVMTDSGHIVEVQGSAERAT--FSQDHFFAMLNLAKDRIA-DLIKLQKDVISNE 241
                TD+  +     + E  +    ++     + + +D +    I +  +V++ +
Sbjct: 286 LFLAGTDTAIL-----TIEGYSNFLPEEMLLQAVKVGQDAVQATCIAI--EVLAKK 334


>gi|42520733|ref|NP_966648.1| polynucleotide phosphorylase/polyadenylase [Wolbachia endosymbiont
           of Drosophila melanogaster]
 gi|81652354|sp|Q73GN4|PNP_WOLPM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|42410473|gb|AAS14582.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Drosophila melanogaster]
          Length = 757

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 97/249 (38%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTA---TLEEKVPMWIRNTKH 56
           +R+ GR+ +++R+I +   +     GS L   G+T  L  TA   T +E++   I   + 
Sbjct: 310 VRIDGRKHDEIRQIEVEVDILSKTHGSALFTRGNTQALVVTALGTTQDEQIVDDIEGDRR 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     + G      + +   G R     ++  +A+  V+   +     I +  
Sbjct: 370 EHFMLHYNFPSFAVGE----TSAARAPGRREIGHGKLAWKAIHPVLPDKSEFPYTIRVVS 425

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +++++DG +  A + G  +AL D                 +K  VA I+ G++       
Sbjct: 426 EILESDGSSSMATVCGTSLALMDTGV-------------PIKAPVAGIAMGLIKDKDEYV 472

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   + +  S +     L  AK     +++
Sbjct: 473 ILSDILGDEDYLGDMDFKVAGTSEG-VTALQMDMKISGISFEIVEKSLEQAKAGRLHILE 531

Query: 233 LQKDVISNE 241
               VIS  
Sbjct: 532 KMNAVISEH 540



 Score = 82.1 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 89/232 (38%), Gaps = 31/232 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R +SL    +++ A GS +V +GDT +L T      EE V     N +   I   Y M  
Sbjct: 14  RALSLETGKIARQAHGSVVVNYGDTSVLVTVVRKKKEESVDFLPLNVQF--IAKSYAMGK 71

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125
              G   KRE   G+   R   I R+I R++R +          I + C+++  D     
Sbjct: 72  IP-GGFFKRE---GKPSDRETLISRVIDRSIRPLFPEGFHDE--ISVVCNLLTYDTVNPP 125

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDYGEDST 184
              A+ GA  AL                       +A +  G       I++    E   
Sbjct: 126 EVPALIGAVAALA-------------ISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKA 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             +D  F+  D   I+ V+  +E    S+++ F  +    + +  +IKL K+
Sbjct: 173 SSLDL-FLSGDENSILMVE--SEVKELSEENVFNAIKFGHEHLKPVIKLIKE 221


>gi|268575784|ref|XP_002642872.1| Hypothetical protein CBG15142 [Caenorhabditis briggsae]
          Length = 721

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 90/239 (37%), Gaps = 20/239 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--------EEKVPMWIR 52
           +R  GR+    R I +   + K   G  + + G T +++T T          + V   + 
Sbjct: 312 IRCDGRRPTDFRPIRIQVDMYKKLHGCSMFQRGQTQVMSTVTFDSPTAAFHPDSVAQLLG 371

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
           + +       Y     +T +     +++ R+ G       +  +AL+ +          +
Sbjct: 372 SQRKKSFMLHYEFPSFATNDIGASRSLNRREIGHG----ALAEKALKPLFPTGF--PYAV 425

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            + C V++++G +  A++ G  +AL+D    M++ +    +     G ++          
Sbjct: 426 RLACQVLESNGSSSMASVCGGSLALYDAGVPMKNAAAGVAI-----GLISDEKEPETNYK 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
            + D+   ED   D+D     T +G     Q   +    ++      L+ A+  I  ++
Sbjct: 481 VLTDILGIEDYAGDMDFKIAGTKNG-FTAAQLDVKNDGLTRQQLRESLDAARAGIDHVL 538



 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 32/228 (14%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-ITAEYGMLPRSTG---- 71
           T  ++++A  + +   GD  ++ T           +   +G  +  EY     + G    
Sbjct: 42  TGHMARFASAAVVASSGDNSVMATVV----QRKQKQGDGNGVPLQVEYRPSASAVGRIPT 97

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
           N ++RE     Q      I R I R++R ++  ++    Q+I     +  +       I 
Sbjct: 98  NFLRRELS---QSDNEILISRAIDRSIRPLMPANSY-ETQVICKPLALDENADQIMLGIN 153

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI--VDLDYGEDSTIDVDA 189
            A  ALH               S    G +AAI   M     I  V+    E     ++ 
Sbjct: 154 AASSALH-------------ISSAPFNGPLAAIRVSMDPRGKIFHVNPGQEELKASSMNM 200

Query: 190 NFVMTDSGHIVEVQGSAERATFSQ-DHFFAMLNLAKDRIADLIKLQKD 236
              M  +   V ++   E    ++ +     L++A   +  L     +
Sbjct: 201 IVAMRRNQKTVMIELDGEE---TRGEQLEEALDVAFQNVERLHVAMDE 245


>gi|148270567|ref|YP_001245027.1| polynucleotide phosphorylase/polyadenylase [Thermotoga petrophila
           RKU-1]
 gi|187611330|sp|A5IMM8|PNP_THEP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|147736111|gb|ABQ47451.1| Polyribonucleotide nucleotidyltransferase [Thermotoga petrophila
           RKU-1]
          Length = 708

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56
           +R  GR+  ++R IS    +     GS L   G+T  L   TL   + + I +T      
Sbjct: 316 IRADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPMDVQIIDTLLEEGV 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P  TG        S R+ G       +  RAL++++         I +  
Sbjct: 376 KRFMLHYNFPPFCTGEVKPLRGPSRREIGHGH----LAERALKNMLPPEEEFPYTIRVVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++++++G +  A +    +AL D                 +K HVA I+ G++       
Sbjct: 432 EILESNGSSSMATVCSGSLALMDAGV-------------PIKKHVAGIAMGLILEEDAEI 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I   Q   + +  S +     L  A++    ++ 
Sbjct: 479 ILTDIIGMEDHYGDMDFKVAGTRDG-ITAFQMDCKVSGVSDELLMKALMQAREARMYILD 537

Query: 233 LQKDVIS 239
              + IS
Sbjct: 538 RMYETIS 544



 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 93/238 (39%), Gaps = 35/238 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY------- 63
           RE+ +    V+K + GS LV+FGDT +L TA + +K    +       +T E+       
Sbjct: 11  RELVVQYGKVAKQSSGSALVRFGDTVVLATANISDKA---VEGIDFVPLTVEFQERFYAA 67

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           G +P   G  +KRE   G+    +    R+I R +R +         Q+I+    +  + 
Sbjct: 68  GKIP---GGFIKRE---GKPSESAILSARLIDRPIRPLFPKKLRNEVQVIVTVLSVDPNV 121

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED- 182
                 I  A +AL+                   +G VA I  G   G  I  L   ED 
Sbjct: 122 PPDVVGIFAASLALN-------------VSKIPFEGIVAGIRVGYRDGQFIA-LPSEEDI 167

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
               +D     T    +  V+G A+     ++     L  A   I +L+  Q++++S 
Sbjct: 168 EKGLMDITVAGTKDA-VTMVEGEAKEVA--EEDMVKALRFAHSVIKELVDFQEEILSE 222


>gi|270158094|ref|ZP_06186751.1| polyribonucleotide nucleotidyltransferase [Legionella longbeachae
           D-4968]
 gi|289163641|ref|YP_003453779.1| Polynucleotide phosphorylase (PNPase) [Legionella longbeachae
           NSW150]
 gi|269990119|gb|EEZ96373.1| polyribonucleotide nucleotidyltransferase [Legionella longbeachae
           D-4968]
 gi|288856814|emb|CBJ10625.1| Polynucleotide phosphorylase (PNPase) [Legionella longbeachae
           NSW150]
          Length = 721

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 92/244 (37%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R IS+  ++ + A GS L   G+T  +  ATL  +        I      
Sbjct: 314 RIDGRDCKTVRPISIRTKLLERAHGSVLFTRGETQAIVVATLGNERDAQILDNITGESKD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  RA+ +V+  S      + +  +
Sbjct: 374 RFMLHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRAIMAVLPESNDFPYVLRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    ++       +  + +G   A+         + D+
Sbjct: 430 ITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAV---------LTDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   +    +       L+ A +    ++ +  + 
Sbjct: 481 LGDEDHLGDMDFKVAGTEHG-ITALQMDIKIQGITSAIMEQALDQALEGRMYILGVMNNA 539

Query: 238 ISNE 241
           ++  
Sbjct: 540 LAEH 543



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 70/229 (30%), Gaps = 34/229 (14%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRST 70
           L    V++ A+G+       T +L T   +    E    +     +       G +P   
Sbjct: 17  LETGEVARQADGAVFASMNGTQVLATVVGKKDGGENSGFFPLTVNYQEKFYAVGKIP--- 73

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR       I R+I R +R +         Q+I     +  +      A+
Sbjct: 74  GGFNKRE---GRPTELETLISRLIDRPIRPLFPEGFCNEVQVIATVLSLNPEVSPDIVAM 130

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
             +  AL                     G + A   G   G  +++    E     +D  
Sbjct: 131 IASSAALA-------------LSGVPFNGPIGAARVGYRDGIYLLNPSRKELEHSKLDLV 177

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFF-------AMLNLAKDRIADLIK 232
              T +  I+ V+  +E    S+D           M+      I +L  
Sbjct: 178 VAGTKNA-ILMVE--SEAKELSEDIMRGAIMFGHEMMKNVIKAIEELAA 223


>gi|256821536|ref|YP_003145499.1| polyribonucleotide nucleotidyltransferase [Kangiella koreensis DSM
           16069]
 gi|256795075|gb|ACV25731.1| Polyribonucleotide nucleotidyltransferase [Kangiella koreensis DSM
           16069]
          Length = 706

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 96/248 (38%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR  + +R + +   V     GS +   G+T  +  ATL  +    I+++  G    
Sbjct: 315 RIDGRDPDMVRALDVRTGVFPRTHGSAIFTRGETQAMVFATLGTERDAQIKDSIMGEAKD 374

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + ++V   A     I +  +
Sbjct: 375 HFMLHYNFPPYCVGETGFMGSPKRREIGHG----RLAKRGVAAMVPGIAEFPYTIRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ G  +AL D    M             K  VA I+ G++     + +
Sbjct: 431 ITESNGSSSMASVCGTSLALMDAGVPM-------------KAPVAGIAMGLVKEADNFVV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G I  +Q   +    +Q+     L+ AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGTENG-ITALQMDIKIEGITQEIMEQALHQAKGGRLHILSV 536

Query: 234 QKDVISNE 241
               +   
Sbjct: 537 MNQALEKP 544



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 78/233 (33%), Gaps = 34/233 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V++ A G+ ++    T      T    + E    +     +   T   G +
Sbjct: 13  RTVTIETGRVARQATGAVVIDCDGTTAFVAVTGKKEVREGQDFFPLTVNYTEKTYAAGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KREA   R       I R+I R LR +     +   Q++I    +  D  T 
Sbjct: 73  P---GGFLKREA---RPSDEETLIARLIDRPLRPLFPDGFMNEVQVVITIVSVNQDVPTE 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                     G V A   G L G  +++    +     
Sbjct: 127 VVAMLGASAALEISGI-------------PFSGPVGAAQVGYLDGEYVLNPSVTQLKESK 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAML-------NLAKDRIADLIK 232
           +D     T+S  ++     +E     ++     +        +A   I +L  
Sbjct: 174 LDLMVAGTESAVLMV---ESEANELPENVMLGAVMFGHQESQVAIKAIKELAA 223


>gi|332882701|ref|ZP_08450313.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332679501|gb|EGJ52486.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 747

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 87/245 (35%), Gaps = 20/245 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +RL GR   Q+R I         A GS +   G+T  LTT TL    E  V         
Sbjct: 318 IRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTLGTSREANVIDLPSEQGE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG        S R+ G       +  RAL+ ++         + +  
Sbjct: 378 ERFYLHYNFPPFSTGEARPLRGTSRREIGHG----NLAQRALKRMIPED--CPYTVRVVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A +    +AL D    M    +   +  +  G   A+         + D
Sbjct: 432 EILESNGSSSMATVCAGTLALMDAGVQMVKPVSGIAMGLISDGDRYAV---------LSD 482

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I   Q   +    S +     LN A++    ++    D
Sbjct: 483 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKIKGLSYEILEKALNQAREGRMHILGKITD 541

Query: 237 VISNE 241
            I+  
Sbjct: 542 TIAQP 546



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 78/228 (34%), Gaps = 27/228 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R I++      K A+G+ +V+ G+  LL T      +  +         +    A  G  
Sbjct: 16  RTITIETGKLAKQADGAVVVQMGNAMLLATVVSARDINPETDFLPLTVDYREKFAAAGRF 75

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KREA   R   +     R++ R LR +         Q++I   +I  D    
Sbjct: 76  P---GGFFKREA---RPSDQEILTMRLVDRVLRPLFPKDYHAETQVMI--QLISHDENV- 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                     + D L  +   +          G ++ +  G + G  IV+    +    D
Sbjct: 127 ----------MPDALAGLAASACLAVSDIPFDGPISEVRVGRVNGKFIVNPSREQLEASD 176

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           +D   V      +  V+G  E    S+      +  A + I   I+ Q
Sbjct: 177 IDI-MVGASKDFVAMVEG--EMDEVSEKDMAEAIKFAHEAIKPHIEAQ 221


>gi|229019001|ref|ZP_04175843.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1273]
 gi|229025246|ref|ZP_04181668.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1272]
 gi|228736074|gb|EEL86647.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1272]
 gi|228742329|gb|EEL92487.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1273]
          Length = 712

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILN 536

Query: 233 LQKDVISNE 241
               VI+  
Sbjct: 537 HMLSVIAEP 545



 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMFGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|296285001|ref|ZP_06862999.1| polynucleotide phosphorylase/polyadenylase [Citromicrobium
           bathyomarinum JL354]
          Length = 769

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 95/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR+ +++R I     +     GS L   G+T  + T TL     E++   +    + 
Sbjct: 318 RIDGRKLDEVRPIEAIVGLLPRTHGSSLFTRGETQAICTTTLGTKDAEQMIDGLEGLSYN 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      ++  RAL  V+         I +  D
Sbjct: 378 HFMLHYNFPPYSVGEVGRFGFTGRREIGHG----KLAWRALHPVLPSHEDFPYTIRVLSD 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +++ D    +E   +   +  +L+G   A+         + D+
Sbjct: 434 ITESNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGDDFAV---------LSDI 484

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     ++SG I  +Q   + A  +Q+     L  AK   A ++      
Sbjct: 485 LGDEDHLGDMDFKVAGSESG-ITSLQMDIKVAGITQEIMAKALEQAKAGRAHILGEMTKA 543

Query: 238 ISN 240
           + +
Sbjct: 544 LGS 546



 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 76/225 (33%), Gaps = 29/225 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           ++L    +++ A+G+ L  +G+T +L   T  +KV           +T  Y     S   
Sbjct: 16  LTLETGRIARQADGAVLATYGETVVLCAVTAAKKV---KEGQDFFPLTVNYQ-EKFSAAG 71

Query: 73  RVKREAVSG--RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TA 128
           R+         R   +   + R+I R +R +          I +   V+  DG T     
Sbjct: 72  RIPGGFFKREARPTEKETLVSRLIDRPVRPLFPEGFYNE--INVIAQVLSFDGETEPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY--GEDSTID 186
           A+  A  AL                     G +A+   G   G   ++       D    
Sbjct: 130 AMIAASAAL-------------TISGVPFMGPIASARVGFRNGEYELNPTQSAALDDEGR 176

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           +D     T+   ++ V+  +E    +++     +  A D    +I
Sbjct: 177 LDLVVAATNDA-VMMVE--SEAKELTEEEMLGAVMFAHDECRKVI 218


>gi|229031437|ref|ZP_04187437.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1271]
 gi|228729726|gb|EEL80706.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1271]
          Length = 712

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILN 536

Query: 233 LQKDVISNE 241
               VI+  
Sbjct: 537 HMLSVIAEP 545



 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTVETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|229174473|ref|ZP_04302005.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus MM3]
 gi|228609033|gb|EEK66323.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus MM3]
          Length = 712

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILN 536

Query: 233 LQKDVISNE 241
               VI+  
Sbjct: 537 HMLSVIAEP 545



 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTVETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|260223146|emb|CBA33418.1| Polyribonucleotide nucleotidyltransferase [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 722

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 94/243 (38%), Gaps = 27/243 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  ATL  +        +      
Sbjct: 338 RIDGRDTRTVRAIEIRNGVLPRTHGSSLFTRGETQALVIATLGTERDAQRIDALSGEYED 397

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +      R+ G      R+  RAL +V+         + +  +
Sbjct: 398 RFMLHYNMPPFATGETGRVGTPKRREIGHG----RLAKRALVAVLPTKEEFPYSLRVVSE 453

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G  ++L D                 LK HVA I+ G++        
Sbjct: 454 ITESNGSSSMASVCGGCLSLMDAGV-------------PLKAHVAGIAMGLIKEDNRFAV 500

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-IADLIK 232
           + D+   ED   D+D     T +G I  +Q   +    +++     L  AK+  +  L +
Sbjct: 501 LTDILGDEDHLGDMDFKVAGTTNG-ITALQMDIKIQGITKEIMQVALAQAKEARVHILGE 559

Query: 233 LQK 235
           +QK
Sbjct: 560 MQK 562



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 75/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           +++    +++ + G+ L+    T +L T   +         +     +   +   G +P 
Sbjct: 39  VTMETGEIARQSTGAVLLDMDGTVVLATVVGKTEGKPGQDFFPLTVDYLEKSYAAGKIP- 97

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  KRE   GR         R+I R +R +          +++    +  +     A
Sbjct: 98  --GSFFKRE---GRPSEFETLTSRLIDRPIRPLFPEGFFNEVHVVVHTVSLNPEVDADIA 152

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+     AL                     G + A   G + G  +++          +D
Sbjct: 153 AMIAVSAALSVSGI-------------PFNGPIGAARVGYVNGEYVLNPGQTARKDSIMD 199

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
                T++  ++     +E    S++     +    +     I  + +L +D 
Sbjct: 200 LVVAGTEAAVLMV---ESEAQQLSEEVMLGAVVYGHEQSKTAINAIHELVRDA 249


>gi|281412875|ref|YP_003346954.1| polyribonucleotide nucleotidyltransferase [Thermotoga naphthophila
           RKU-10]
 gi|281373978|gb|ADA67540.1| polyribonucleotide nucleotidyltransferase [Thermotoga naphthophila
           RKU-10]
          Length = 708

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56
           +R  GR+  ++R IS    +     GS L   G+T  L   TL   + + I +T      
Sbjct: 316 IRADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPMDVQIIDTLLEEGV 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P  TG        S R+ G       +  RAL++++         I +  
Sbjct: 376 KRFMLHYNFPPFCTGEVKPLRGPSRREIGHGH----LAERALKNILPPEEEFPYTIRVVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++++++G +  A +    +AL D                 +K HVA I+ G++       
Sbjct: 432 EILESNGSSSMATVCSGSLALMDAGV-------------PIKKHVAGIAMGLILEEDAEI 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I   Q   + +  S +     L  A++    ++ 
Sbjct: 479 ILTDIIGMEDHYGDMDFKVAGTRDG-ITAFQMDCKVSGVSDELLMKALMQAREARMYILD 537

Query: 233 LQKDVIS 239
              + IS
Sbjct: 538 RMYETIS 544



 Score = 94.8 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 93/238 (39%), Gaps = 35/238 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY------- 63
           RE+ +    V+K + GS LV+FGDT +L TA + +K    +       +T E+       
Sbjct: 11  RELVVQYGKVAKQSSGSVLVRFGDTVVLATANISDKA---VEGVDFVPLTVEFQERFYAA 67

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           G +P   G  +KRE   G+    +    R+I R +R +         Q+I+    +    
Sbjct: 68  GKIP---GGFIKRE---GKPSESAILSARLIDRPIRPLFPKKLRNEVQVIVTVLSVDPSI 121

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED- 182
                 I  A +AL+                   +G VA I  G   G  I  L   ED 
Sbjct: 122 PPDVVGIFAASLALN-------------VSKIPFEGVVAGIRVGYRDGQFIA-LPSEEDI 167

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
               +D     T    +  V+G A+    +++     L  A   I +L+  Q++++S 
Sbjct: 168 EKGLMDITVAGTKDA-VTMVEGEAKE--VTEEDMVKALRFAHSVIKELVDFQEEILSE 222


>gi|322418695|ref|YP_004197918.1| polyribonucleotide nucleotidyltransferase [Geobacter sp. M18]
 gi|320125082|gb|ADW12642.1| polyribonucleotide nucleotidyltransferase [Geobacter sp. M18]
          Length = 696

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I+    +   A GS L   G+T  +  ATL   V     ++ +G    
Sbjct: 312 RIDGRDTKTIRNIATEVGLLPRAHGSALFTRGETQSIVAATLGTSVDEQRIDSLYGDSRK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R A   R+ G       +  RAL+ V+         I I  D
Sbjct: 372 KFLLHYNFPPYSVGETSFRLAPGRREIGHGM----LAERALQQVLPKHDDFPYTIRIVSD 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A + G  +++ D                 +K  VA I+ G++        
Sbjct: 428 ITESNGSSSMATVCGGSLSMMDAGI-------------PIKAPVAGIAMGLIKEGDDFAI 474

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           + D+   ED   D+D     T  G +  +Q   +    +++   A L  AK  
Sbjct: 475 LSDILGDEDHLGDMDFKVAGTAEG-VTALQMDIKIGGVTREIMSAALAQAKAG 526



 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 88/234 (37%), Gaps = 31/234 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--ITAEYGMLPRST 70
           I++    ++K A G+ ++K GDT +L TA     V M       G+  +T  Y     + 
Sbjct: 14  ITIETGKIAKQASGAVMIKSGDTMVLVTA-----VAMKSAKEGQGFFPLTVNYQEKAYAG 68

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G    +  KRE   GR         R+I R +R +     L   Q++        D    
Sbjct: 69  GRIPGSFFKRE---GRPSDNETLTCRLIDRPIRPLFPEGFLNDTQVMATVVSADKDHDPG 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                     G +A +  G + G  I +    ++   D
Sbjct: 126 ILAMIGASAAL-------------MVSDVPFAGPIAGVKVGRVDGVFIANPSAEQEEQSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ++   +      I+ V+GSA     S++     +   K  +  ++  Q+++++ 
Sbjct: 173 MEI-VIAASKDAILMVEGSASE--VSENDLLEAIFFGKQAVQGILAAQEELVAK 223


>gi|53804618|ref|YP_113771.1| polynucleotide phosphorylase/polyadenylase [Methylococcus
           capsulatus str. Bath]
 gi|81682222|sp|Q609C6|PNP_METCA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|53758379|gb|AAU92670.1| polyribonucleotide nucleotidyltransferase [Methylococcus capsulatus
           str. Bath]
          Length = 691

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 89/241 (36%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR  + +R I++   V     GS L   G+T  L  ATL       + +   G    
Sbjct: 313 RIDGRDLSTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTGRDAQLIDALEGEYKE 372

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R +++++         I I  +
Sbjct: 373 NFMLHYNFPPYCVGETGAIGSPKRREIGHG----RLAKRGVQAIMPTMDEFPYVIRIVSE 428

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G+ +AL D     +       +  +L+G   A+         + D+
Sbjct: 429 ITESNGSSSMASVCGSSLALMDAGVPTKGAVAGIAMGLILEGEEFAV---------LSDI 479

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    + +     L+ A++    ++      
Sbjct: 480 MGDEDHLGDMDFKVAGTRDG-VTALQMDIKIDGITPEIMRQALHQAREGRMHILDKMAQA 538

Query: 238 I 238
           +
Sbjct: 539 L 539



 Score = 51.6 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 53/169 (31%), Gaps = 26/169 (15%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR   +     R+I R +R +         Q++     +  +      ++
Sbjct: 74  GGFFKRE---GRPSEKETLTARLIDRPIRPLFPDGFTHEVQVVATVMSLNPEVDPDIPSM 130

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  AL                    KG + A   G + G  +++ D       ++D  
Sbjct: 131 LGASAALTLSGL-------------PFKGPIGAARVGFVNGAYVLNPDGSVVEGSELDLV 177

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232
              T +  ++     +E     ++            +  A   I +L +
Sbjct: 178 VAGTANAVLMV---ESEAKILPEEVMLGAVVFGHEQMQTAIRAINELAE 223


>gi|51892669|ref|YP_075360.1| polynucleotide phosphorylase/polyadenylase [Symbiobacterium
           thermophilum IAM 14863]
 gi|81388937|sp|Q67P77|PNP_SYMTH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|51856358|dbj|BAD40516.1| polynucleotide phosphorylase [Symbiobacterium thermophilum IAM
           14863]
          Length = 762

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 91/251 (36%), Gaps = 28/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           +R  GR   ++R I     +     GS L + G T +L+  TL     M     +   + 
Sbjct: 328 IRPDGRSLTEIRPIECAVDLLPRPHGSGLFQRGQTQVLSICTLGTLGDMQKLDDLTLEET 387

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G          R+ G       +  RAL  V+         I +  
Sbjct: 388 KRFMHHYNFPPYSVGETRPLRGPGRREIGHG----ALAERALEPVIPPEEEFPYTIRVVS 443

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171
           +V++++G +  A++ G+ +AL                   +K  VA ++ G++       
Sbjct: 444 EVLESNGSSSMASVCGSTLALMAAGV-------------PIKAPVAGVAMGLVEDPETGR 490

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED+  D+D     T  G +  +Q   + +  S++     L  A++    +
Sbjct: 491 YAVLTDIQGIEDALGDMDFKVAGTKKG-VTALQMDMKISGTSREILEKALMQAREGRMFI 549

Query: 231 IKLQKDVISNE 241
           ++     IS  
Sbjct: 550 MEKMLACISEP 560



 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 85/236 (36%), Gaps = 32/236 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R ++L    ++K A GS LV +GD+ +L TA    T  E V  +     +       G +
Sbjct: 28  RTMTLETGRLAKQASGSVLVNYGDSVVLCTAVGSATPREGVDFFPLTVDYEERMYSVGRI 87

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   GN  +RE   GR   ++    R+  R +R +         Q++     +  D    
Sbjct: 88  P---GNWFRRE---GRPTSKAILWARLTDRPIRPLFPEGFRNDVQVVCTVLSVDPDHPVE 141

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              + GA  AL                    +G +  +  G++ G  +++    +    +
Sbjct: 142 IMGMIGASAAL-------------TISDIPFEGPIGGVIVGLVDGQFVINPTAEQQERSE 188

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA-----DLIKLQKDV 237
           +      T+   ++ V+  A+     +      +    + I       + ++Q +V
Sbjct: 189 MHLVVAGTEHA-VLMVEAGAKEVP--EQTMLDAILFGHEVIKNTIIPTIKQMQAEV 241


>gi|115522221|ref|YP_779132.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
           palustris BisA53]
 gi|122298071|sp|Q07V82|PNP_RHOP5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|115516168|gb|ABJ04152.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris BisA53]
          Length = 721

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 93/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R+I     V   A GS L   G+T  L   TL         ++  G    
Sbjct: 316 RIDGRDSTTVRQIIAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDSLSGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      ++  RAL  V+         + +  +
Sbjct: 376 QFLLHYNFPPFSVGETGRMGGTKRREIGHG----KLAWRALHPVLPPHHEFPYTLRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    ++  +    +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     TD G I  +Q   + A  +++     L  AK+    ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTDHG-ITSLQMDIKIAGITEEIMKVALGQAKEGRIHILGEMSKA 541

Query: 238 ISN 240
           ++N
Sbjct: 542 LTN 544



 Score = 84.0 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 77/235 (32%), Gaps = 36/235 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ +  +G+T +L T     T  E V        +   T   G +
Sbjct: 14  RPLKLETGKIARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLTVDYIEKTYAAGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +   + R+I R +R +         Q+I+       +    
Sbjct: 74  P---GGYFKRE---GRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSHDMENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+     AL                    KG + A   G +    +++    E     
Sbjct: 128 ILALVATSAALTLSGA-------------PFKGPIGAARVGFINDEYVLNPVLDEMIETQ 174

Query: 187 VDANFVMTDSGHIV------EVQGSAERAT--FSQDHF----FAMLNLAKDRIAD 229
           +D     T    ++      E+          F   HF     A++ LA+    +
Sbjct: 175 LDLVVAGTADAVLMVESEAKELNEDIMLGAVMFGHRHFQPVVQAIIELAEKAAKE 229


>gi|163941544|ref|YP_001646428.1| polynucleotide phosphorylase/polyadenylase [Bacillus
           weihenstephanensis KBAB4]
 gi|229061410|ref|ZP_04198755.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603]
 gi|229134614|ref|ZP_04263424.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST196]
 gi|226702619|sp|A9VT44|PNP_BACWK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|163863741|gb|ABY44800.1| Polyribonucleotide nucleotidyltransferase [Bacillus
           weihenstephanensis KBAB4]
 gi|228648875|gb|EEL04900.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST196]
 gi|228717833|gb|EEL69481.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603]
          Length = 717

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVLPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSREILEEALQQAKVGRMHILN 536

Query: 233 LQKDVISNE 241
               VI+  
Sbjct: 537 HMLSVIAEP 545



 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDM 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|15599934|ref|NP_253428.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
           PAO1]
 gi|107103839|ref|ZP_01367757.1| hypothetical protein PaerPA_01004910 [Pseudomonas aeruginosa PACS2]
 gi|116052887|ref|YP_793204.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893835|ref|YP_002442704.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
           LESB58]
 gi|254238523|ref|ZP_04931846.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           C3719]
 gi|254244358|ref|ZP_04937680.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           2192]
 gi|296391567|ref|ZP_06881042.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
           PAb1]
 gi|313109720|ref|ZP_07795660.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           39016]
 gi|81539753|sp|Q9HV59|PNP_PSEAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|122257102|sp|Q02FT2|PNP_PSEAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702678|sp|B7V1F2|PNP_PSEA8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|9951002|gb|AAG08126.1|AE004888_1 polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           PAO1]
 gi|115588108|gb|ABJ14123.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126170454|gb|EAZ55965.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           C3719]
 gi|126197736|gb|EAZ61799.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           2192]
 gi|218774063|emb|CAW29879.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           LESB58]
 gi|310882162|gb|EFQ40756.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           39016]
          Length = 701

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 93/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R + +   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLRIEVGVLGKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGERKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R    GR   R     R+  R + +++         I +  +
Sbjct: 376 AFMLHYNFPPFSVGE-CGRMGSPGR---REIGHGRLARRGVAAMLPTQDEFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++  G     
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGV-------------PVKAPVAGIAMGLVKEGEKFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     TD G +  +Q   +    +++     L  A +   +++  
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTDKG-VTALQMDIKINGITEEIMEIALGQALEARLNILGQ 537

Query: 234 QKDVISNE 241
              VI+  
Sbjct: 538 MNQVIAKP 545



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 28/229 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ LV   D  +L T     +  E    +  +  +   T   G +P 
Sbjct: 15  VTLETGRIARQATGAVLVTMDDVSVLVTVVGAKSPAEGRDFFPLSVHYQEKTYAAGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +     R+I R +R +     +   Q++              A
Sbjct: 74  --GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTNKKSDPDIA 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYGEDSTIDV 187
           A+ G   AL                     G + A   G       I++  Y +  +  +
Sbjct: 129 AMIGTSAALAISGI-------------PFAGPIGAARVGFHPEIGYILNPTYEQLQSSSL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D     T+   ++     +E    ++D     +  A D    +I+  K+
Sbjct: 176 DMVVAGTEDAVLMV---ESEADELTEDQMLGAVLFAHDEFQAVIRAVKE 221


>gi|294670819|ref|ZP_06735675.1| hypothetical protein NEIELOOT_02522 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307306|gb|EFE48549.1| hypothetical protein NEIELOOT_02522 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 701

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 95/241 (39%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALIAVLPEPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+ +  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILENNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K+ 
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALEQAKEARLYILAQMKEA 541

Query: 238 I 238
           +
Sbjct: 542 V 542



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 82/234 (35%), Gaps = 28/234 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T +++V      +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTADKEVKAGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSLDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G   G  +++    E     +D
Sbjct: 130 AMIGASAALV-------------LSGVPFAGPIGAARVGYADGAYLLNPTKSELEKSQLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                T    ++     +E     +D     +    +++  +I    + +++EV
Sbjct: 177 LVVAGTAKAVLMV---ESEAQILPEDVMLGAVVYGHEQMQAVIAAINE-LADEV 226


>gi|297617194|ref|YP_003702353.1| polyribonucleotide nucleotidyltransferase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145031|gb|ADI01788.1| polyribonucleotide nucleotidyltransferase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 717

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 96/249 (38%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R+ GR+ N++R +S    +     GS L   G T +L+     A  EE++   +   + 
Sbjct: 312 IRVDGRRLNEIRPVSCEVGILPRTHGSGLFTRGQTQVLSVTTLGAVGEEQILDGLGVEES 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G          R+ G       +  +AL +V+         I +  
Sbjct: 372 KRYLHHYNFPPYSVGETRPIRGPGRREIGHG----ALAEKALEAVLPSQEEFPYTIRVVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T   ++ G+ ++L                   +K  V+ I+ G++       
Sbjct: 428 EVLESNGSTSMGSVCGSTLSLMHAGV-------------PIKRPVSGIAMGLVKEGDRFA 474

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     +  G +  +Q   +    +++   A L  AK+    ++ 
Sbjct: 475 VLSDIQGIEDALGDMDFKVAGSAEG-VTALQMDIKIPGVTREILHAALKQAKEGRMYIMD 533

Query: 233 LQKDVISNE 241
           +    IS  
Sbjct: 534 IMMKAISQP 542



 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 86/234 (36%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    V+K A G+ L+ +GDT +L TAT      E +  +     +       G +
Sbjct: 13  RPLRVEIGKVAKQANGAALLYYGDTVVLVTATASKEPREGIDFFPLTCDYEERLYAVGRI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR    +    R++ R +R +          ++     +  D    
Sbjct: 73  P---GGFIKRE---GRPTEAAILSARLMDRPIRPLFPKGFRNDVHVVATVMSVDQDNPPN 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI GA +AL                     G + A+  GM+ G  +++    + +   
Sbjct: 127 VTAIIGASIALS-------------ISDIPFAGPIGAVIVGMVDGEFVINPTVEQSARSQ 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    IV V+  A      ++     +  A + I  +I  Q+ +++ 
Sbjct: 174 MHLTVGGTRDA-IVMVEARANEVP--EETMLDAIFFAHEEIKRIIDFQEKIVAE 224


>gi|85706001|ref|ZP_01037097.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp. 217]
 gi|85669589|gb|EAQ24454.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp. 217]
          Length = 713

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 27/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +++R I     +     GS L   G+T  L   TL         +  HG   +
Sbjct: 318 RIDGRRLDEIRSIVCETGLLPRTHGSSLFTRGETQALVVTTLGTGDDEQFIDALHGNFKS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+  +      I +  +
Sbjct: 378 NFLLHYNFPPYSVGEAGR----VGPPGRREIGHGKLAWRALQAVLPPATDFPYTIRLVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           + +++G +  A++ G  +++ D                 LK  VA ++ G++        
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKTSVAGVAMGLVLEEDGSFA 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + A  + +     L  AK     ++ 
Sbjct: 481 ILSDILGDEDHLGDMDFKVAGTADG-ITSLQMDIKVAGITPEIMKKALEQAKAGRLHILG 539

Query: 233 LQKDVISN 240
                +S 
Sbjct: 540 EMDKALSG 547



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 76/226 (33%), Gaps = 33/226 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70
           ++L    +++ A+G+ +   G+T ++   T  ++            +T  Y     +   
Sbjct: 16  LTLETGKIARQADGTVIATLGETSVMANVTFAKEAKP---GQDFFPLTVHYQERYYAAGK 72

Query: 71  --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +           ++ C V+  D      
Sbjct: 73  VPGGFFKREA---RPSEKETLTARLIDRPIRPLFVPGFKHET--LVMCTVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD----YGED 182
             A+     AL                     G +A    G + G  I++ +    +   
Sbjct: 128 IVAMIATSAALTISGA-------------PFMGPIAGCRVGFVDGEYILNPEIDDMHNLR 174

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
           +  +   + V+  +   V +  S E    +++     +  A ++I 
Sbjct: 175 NNPEQRLDLVVAGTKDAVMMVES-EAYELTEEEMLGAVTFAHEQIQ 219


>gi|71891895|ref|YP_277625.1| polynucleotide phosphorylase/polyadenylase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|123747829|sp|Q493T3|PNP_BLOPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|71796001|gb|AAZ40752.1| polynucleotide phosphorylase [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
          Length = 699

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 92/247 (37%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           +R+ GR ++ +R+I +   +     GS L   GDT  L   TL  +        +   + 
Sbjct: 316 LRIDGRSQDTIRKIDIKTGILPRTHGSALFTRGDTQALVAVTLGTERDAQNIDGLTGIRV 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P   G      A   R+ G      R+  R + +V+  +      I +  
Sbjct: 376 DRFLLHYNFPPYCVGEIGVIGAPKRREIGHG----RLAKRGMLAVMPNANEFPYTIRVVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A+I G  +AL D                 +K  VA ++ G++       
Sbjct: 432 EITESNGSSSMASICGTSLALMDAGV-------------PIKAAVAGVAMGLIKEGNDFV 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     +  G I  +Q   +    + D     L  AK+    ++ 
Sbjct: 479 VLSDIVSDEDHIGDMDFKVSGSRQG-ITALQMDIKTDGITYDIINIALKKAKNARLQILD 537

Query: 233 LQKDVIS 239
           + + +I 
Sbjct: 538 VMEQIIK 544



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 76/226 (33%), Gaps = 30/226 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           +++ A  + +V   DT +L T      +  +   +     +   T   G  P   G   +
Sbjct: 23  IARQANAAVMVSMSDTTVLVTVVSSNQVRLEQDFFPLVVNYQERTYAAGKFP---GGFFR 79

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE   GR         R+I R +R +     +   Q++     +         AI G   
Sbjct: 80  RE---GRPSENETLTSRLIDRPIRPLFPKGFINDVQVVATVVSVNPQVNPDIVAIIGVSA 136

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
           AL                     G + A   G +    +++    E S   +D     T+
Sbjct: 137 ALS-------------LSDIPFFGPIGAARVGYIKNQYVLNPTTTELSNSKLDLVISGTE 183

Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
           S +I+ V+  +E    S+      +    ++    I ++ KL K V
Sbjct: 184 S-NILMVE--SESCLLSEKEILDAIIFGHEQQQIVIHNINKLVKKV 226


>gi|126663253|ref|ZP_01734251.1| putative polyribonucleotide nucleotidyltransferase [Flavobacteria
           bacterium BAL38]
 gi|126624911|gb|EAZ95601.1| putative polyribonucleotide nucleotidyltransferase [Flavobacteria
           bacterium BAL38]
          Length = 719

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 84/244 (34%), Gaps = 20/244 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           RL GR+  ++R I           GS L   G+T  L TATL    E             
Sbjct: 319 RLDGRKTTEIRPIWCEVDYLPSVHGSALFTRGETQALATATLGTSREANQIDSPSEQGEE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG        S R+ G       +  RAL++++         I I  +
Sbjct: 379 KFYLHYNFPPFSTGEARPLRGTSRREVGHG----NLAQRALKNMIPAE--NPYTIRIVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V++++G +  A +    +AL D    M    +   +  +  G   A+         + D+
Sbjct: 433 VLESNGSSSMATVCAGTLALMDAGVQMIRPVSGIAMGLITDGERFAV---------LSDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I   Q   +      +     L  A+D    ++    + 
Sbjct: 484 LGDEDHLGDMDFKVTGTSEG-ITACQMDIKIDGLKYEIMEQALAQARDGRLHILGKLTET 542

Query: 238 ISNE 241
           ++  
Sbjct: 543 LAKP 546



 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 76/228 (33%), Gaps = 27/228 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHGWITAEYGML 66
           R I++    ++K A+GS +V+ G T +L T     K    I        +    A  G  
Sbjct: 16  RSITIETGRLAKQADGSVVVRIGKTVILGTVVSARKASPGIDFLPLTVDYREKFAAAGRF 75

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KREA   R         R++ R LR +         Q++I       D    
Sbjct: 76  P---GGFFKREA---RPSDSEVLTMRLVDRVLRPLFPSDYHAEVQVMIQLMSHDED---- 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                     + D L  +   +         +  ++    G + G  I++    +    D
Sbjct: 126 ---------VMPDALAGLAASAALALSDIPFETLISEARVGRIDGKFIINPSRAQLELSD 176

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           +D   +   +  I  V+G  E    S+      +  A + I   I  Q
Sbjct: 177 IDM-MIGASTDSIAMVEG--EMKEISEAEMLEAIKFAHEHIKVQIAAQ 221


>gi|189499525|ref|YP_001958995.1| polynucleotide phosphorylase/polyadenylase [Chlorobium
           phaeobacteroides BS1]
 gi|226702633|sp|B3EMN6|PNP_CHLPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189494966|gb|ACE03514.1| Polyribonucleotide nucleotidyltransferase [Chlorobium
           phaeobacteroides BS1]
          Length = 734

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 91/244 (37%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR+  ++R IS+   +   A GS L   G+T  L   TL  K    + +T       
Sbjct: 332 RLDGRKLEEVRPISIELGLIPRAHGSALFTRGETQALVVLTLGTKKDAQMIDTLLDDTEK 391

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +   V  R+ G       +  RA++ VV   +     I +  +
Sbjct: 392 RFMLHYNFPPFSVGETGRVGGVGRREIGHG----NLAERAVKKVVPSESEFPYTIRLVSE 447

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +++++G +  A++ GA +A  D    +    +   +  + +    A+         + D+
Sbjct: 448 ILESNGSSSMASVCGATLAAMDGGVPLTKPVSGIAMGLIKEDDNYAV---------LSDI 498

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I   Q   +            L  +K+    ++    + 
Sbjct: 499 LGNEDHLGDMDFKVAGTRDG-ITACQMDIKIDGLDYHILEKALEQSKNGRLHILDKMTES 557

Query: 238 ISNE 241
           I++ 
Sbjct: 558 IADP 561



 Score = 94.8 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 83/229 (36%), Gaps = 28/229 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVP-----MWIRNTKHGWITAEYGMLP 67
           I++      K A+G+ +V+ GDT ++ T       P      +    ++       G  P
Sbjct: 15  ITIETGKMAKQADGATIVRMGDTMVIATVVSSRTPPSPNQDFFPMQVEYREKYYAAGKFP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE+   R   +     R+I RALR +         QIII   VI +D     
Sbjct: 75  ---GGFIKRES---RPSEKEILSARLIDRALRPLFPNGYYQDTQIIIS--VISSD-QLND 125

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           A + G   A           +            ++ +  G + G  +++    E +  D+
Sbjct: 126 ADVLGGIAA----------SAAIMVSDIPFANSMSEVRVGRINGEFVINPTINELAQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D +   T+   I  ++G  E    S+      +    + I  +  LQ D
Sbjct: 176 DISIGGTND-TICMLEG--EMNEISEAEMLEAIRFGHEAIKKICSLQDD 221


>gi|224825869|ref|ZP_03698973.1| Polyribonucleotide nucleotidyltransferase [Lutiella nitroferrum
           2002]
 gi|224602093|gb|EEG08272.1| Polyribonucleotide nucleotidyltransferase [Lutiella nitroferrum
           2002]
          Length = 719

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I++   V     GS L   G+T  +   TL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPIAIRTGVLPRTHGSALFTRGETQAMVVTTLGTQRDEQIIDALAGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +      R+ G      R+  RAL  V+  +      + +  +
Sbjct: 376 RFMLHYNFPPYSTGEAGRMGPPKRREIGHG----RLAKRALAQVLPSADEFGYSMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL +    ++       +  +L+G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLALLNAGVPLKAHVAGIAMGLILEGNRFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L+ AK+    ++ L K+ 
Sbjct: 483 LGDEDHLGDMDFKVAGTAEG-VTALQMDIKIQGITKEIMQVALDQAKEGRLHILGLMKEA 541

Query: 238 ISNE 241
           +   
Sbjct: 542 VEGP 545



 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 77/231 (33%), Gaps = 38/231 (16%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
           ++L    V++ A G+ LV   DT +L +    + V      +     +   T   G +P 
Sbjct: 16  VTLETGEVARQASGAVLVTMEDTVVLVSVVGSQNVKPGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDVQIVATVMSLNPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G   G  I++    E  T  +D
Sbjct: 130 AMIGASAALA-------------ISGLPFNGPIGAARVGYANGDYILNPTKTELETSQLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADL 230
                T    ++ V+  A+            F  D   A    A   I +L
Sbjct: 177 LVVAGTHRA-VLMVESEAKELPEAVMLGAVVFGHDQLQA----AIKAINEL 222


>gi|145520971|ref|XP_001446341.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413818|emb|CAK78944.1| unnamed protein product [Paramecium tetraurelia]
          Length = 227

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 83/238 (34%), Gaps = 30/238 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   QMR I     +    +GSCL K G T ++               T+   +  
Sbjct: 5   RQDGRNLQQMRNIEFKLAIDLSVDGSCLYKQGLTEVICLVQGPRA------KTQSELLLI 58

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           EY + P S     KR +   +      E    +  +  +++ L   G  +I I   VIQ 
Sbjct: 59  EYSVSPFSNIE-SKRSSKFDKDYSMFAEN---LKESFENLIILDENGKSEISISVCVIQN 114

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DG +++A      +AL D    M             K  + +++ G+  G  IVDL   E
Sbjct: 115 DGSSKSAVFNAITLALLDAGVSM-------------KDFLVSVTVGLDQGNLIVDLTQEE 161

Query: 182 DSTIDVDANFVM---TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             T   +               E+    +     Q     +  LA  +  ++ +  K+
Sbjct: 162 SKTAQGELTISYQSRKQKIDFYEL----KTLKLQQQEMDQLSKLAVSKADEIYQWMKE 215


>gi|229012990|ref|ZP_04170155.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM
           2048]
 gi|228748244|gb|EEL98104.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM
           2048]
          Length = 717

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVLPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSREILEEALQQAKVGRMHILN 536

Query: 233 LQKDVISNE 241
               VI+  
Sbjct: 537 HMLSVIAEP 545



 Score = 92.5 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDM 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|229162743|ref|ZP_04290700.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus R309803]
 gi|228620625|gb|EEK77494.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus R309803]
          Length = 712

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILN 536

Query: 233 LQKDVISNE 241
               VI+  
Sbjct: 537 HMLSVIAEP 545



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTVETSQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|187611315|sp|Q2S1P1|PNP_SALRD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 712

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 89/245 (36%), Gaps = 20/245 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKH 56
           R+ GR +  +R++ +         GS +   G+T +L + TL      + V     +T  
Sbjct: 322 RIDGRDQTDVRDLWMEVGYLPRVHGSAIFTRGETQVLGSITLGTSDDVQPVDEVFADTDK 381

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G          R+ G S     +  RALR V+         I I+ 
Sbjct: 382 S-FYLHYRFPPFSVGEASYLRGPKRREIGHSM----LAERALRPVIPEQDEFPYTIRINA 436

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           DV++++G +  A++    +AL D    +E       +  V +               + D
Sbjct: 437 DVMESNGSSSMASVCAGSLALMDAGVPIEKPVAGIAMGLVQEDD---------ETTVLTD 487

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I   Q   +    S+D     L  ++D    ++   ++
Sbjct: 488 ILGQEDHLGDMDFKLTGTRDG-ITACQMDMKIEGLSRDVMLKALKQSRDARHHILDRMEE 546

Query: 237 VISNE 241
            I+  
Sbjct: 547 TIAEP 551



 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
           R +SL    ++K A+GS + + GDT +L+TATL + V     +     +    A  G +P
Sbjct: 16  RSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSVNESNFFPLTVDYREKFAAGGKVP 75

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   +     R+I RA+R +          ++              
Sbjct: 76  ---GGFIKRE---GRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFV----------- 118

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
             I+       D +  +   +          G  A +  G + G  IV+    +    D+
Sbjct: 119 --ISAGQDFDADVIAGVGSSAALMLSGAPFAGPFAEVRVGRVDGDYIVNPTMQQTEESDI 176

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   V      +V V+G AE  +  ++     L++A   I  L + Q  ++  
Sbjct: 177 DL-VVAGKEDALVMVEGEAEEIS--EESMIEALDVAHRSIRRLCEGQHRLVEQ 226


>gi|228940895|ref|ZP_04103454.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973824|ref|ZP_04134400.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980413|ref|ZP_04140723.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           Bt407]
 gi|228779233|gb|EEM27490.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           Bt407]
 gi|228785849|gb|EEM33852.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818731|gb|EEM64797.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326941573|gb|AEA17469.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 712

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKIGRVHILN 536

Query: 233 LQKDVISNE 241
               VI+  
Sbjct: 537 HMLSVIAEP 545



 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|34557289|ref|NP_907104.1| polynucleotide phosphorylase/polyadenylase [Wolinella succinogenes
           DSM 1740]
 gi|81833066|sp|Q7M9I4|PNP_WOLSU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|34483005|emb|CAE10004.1| NUCLEOTIDYLTRANSFERASE [Wolinella succinogenes]
          Length = 736

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 85/242 (35%), Gaps = 22/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
           R  GR   ++R I +   +   A  S L   G+T  L  ATL   +          + + 
Sbjct: 347 RADGRGLKEVRPIDIQTNILPNAHASALFTRGETQALVVATLGGDMDAQSYELLTEKGSS 406

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G      A   R+ G       +  RAL   +     G++ I + 
Sbjct: 407 KERFMVHYNFPSFSVGEAGMVGAPGRRELGHG----NLAKRALEPTI--EEWGAQTIRLV 460

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A + G  +AL     +         +  +++    AI         + 
Sbjct: 461 SEILESNGSSSMATVCGGSLALKAAGINTTALVAGVAMGLIVEAEKHAI---------LT 511

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T +G I  +Q   +    S +     L  AK+    ++ + +
Sbjct: 512 DIMGLEDHDGDMDFKIAGTSTG-ITAMQMDIKLGGLSMEILKEALYQAKEGREHILGIME 570

Query: 236 DV 237
             
Sbjct: 571 KA 572



 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 64/182 (35%), Gaps = 14/182 (7%)

Query: 15  SLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG-- 71
           +     ++K A GS L + G + LL +   E              +T +Y     + G  
Sbjct: 16  TFEFGAIAKQANGSVLYRCGKSVLLASVCYESDE---RVKEDFLPLTVQYIEKSYAAGKF 72

Query: 72  --NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
               +KRE+   + G       R+I R+LR +         QI +     Q D   +T A
Sbjct: 73  PGGFIKRES---KPGDFETLTSRIIDRSLRPLFPKGYAHPTQITVMVLSAQNDADLQTMA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL--DYGEDSTIDV 187
           +  A  AL      +    +  ++ + + G +             +DL     E+  + +
Sbjct: 130 LNAASAALFVSDIPLRKPVHGLRIGK-INGALVVNPTTKEMSESTLDLFVSGVEEDLLMI 188

Query: 188 DA 189
           + 
Sbjct: 189 EM 190


>gi|299534733|ref|ZP_07048063.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus
           fusiformis ZC1]
 gi|298729821|gb|EFI70366.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus
           fusiformis ZC1]
          Length = 704

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 89/245 (36%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    + +   GS L   G T  L   T  A  + ++   +   + 
Sbjct: 314 IRPDGRKLDEIRPLSSETGLLQRTHGSGLFTRGQTQALSICTLGALGDVQIIDGLGVEES 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G            G R      +  RAL +V+   ++    I    
Sbjct: 374 KRFMHHYNFPQFSVGE----TGPIRGPGRREIGHGALGERALEAVIPDESIFPYTIRCVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G T  A+I  + +A+ D    ++       +  + KG   +I         + D
Sbjct: 430 EVLESNGSTSQASICASTLAMMDAGVPLKAPVAGIAMGLIKKGEHYSI---------LTD 480

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G +  +Q   +    S++     L  AK     +++    
Sbjct: 481 IQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSRNILEEALTQAKVGRMHILESMLA 539

Query: 237 VISNE 241
            +   
Sbjct: 540 TLPEP 544



 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 88/233 (37%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L TAT+    + +  +     +       G +P
Sbjct: 14  RPLVIEVGQLAKQANGAALVRYGDTSVLATATMSKSPKPLDFFPLTVNYEERLYAAGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q+I        D  +  
Sbjct: 74  ---GGFIKRE---GRPSEKAILASRLIDRPIRPMFPDGFRNEVQVISMVMSNDPDCTSEM 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  IV+    + +   +
Sbjct: 128 AAMVGSSLALA-------------ISDIPFDGPIAGVQVGYIDGEFIVNPTVEQSNRSTI 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             +        I  V+  A      ++     +    + I  +I  Q+ +++ 
Sbjct: 175 HLSVAGNKDA-INMVEAGALEVP--EEIMLEAIMFGHEEIKKIIAFQEQIVAE 224


>gi|228909631|ref|ZP_04073454.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           IBL 200]
 gi|228849920|gb|EEM94751.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           IBL 200]
          Length = 712

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKIGRVHILN 536

Query: 233 LQKDVISNE 241
               VI+  
Sbjct: 537 HMLSVIAEP 545



 Score = 91.7 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|218898959|ref|YP_002447370.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9842]
 gi|228966752|ref|ZP_04127796.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|226702616|sp|B7IUG5|PNP_BACC2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218542651|gb|ACK95045.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9842]
 gi|228792851|gb|EEM40409.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 712

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKIGRVHILN 536

Query: 233 LQKDVISNE 241
               VI+  
Sbjct: 537 HMLSVIAEP 545



 Score = 92.1 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|332295429|ref|YP_004437352.1| Polyribonucleotide nucleotidyltransferase [Thermodesulfobium
           narugense DSM 14796]
 gi|332178532|gb|AEE14221.1| Polyribonucleotide nucleotidyltransferase [Thermodesulfobium
           narugense DSM 14796]
          Length = 721

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 97/247 (39%), Gaps = 25/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH---GW 58
           R+ GR  +++R IS+   +   A GS L   G T  L+ ATL  +    I +T +     
Sbjct: 320 RVDGRSLDEIRPISIQVGLLPRAHGSALFTRGQTQALSIATLGTQEDSQIIDTLYQSSNE 379

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDC 116
           I   Y M   +       EA   R  GR  EI    +  +AL  V+   +     I +  
Sbjct: 380 IRKRY-MHHYNFPGFSVGEARPSRGPGRR-EIGHGALAEKALLPVLPKESDFPYTIRVVS 437

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGYPI 174
           ++++++G +  A+  G+ ++L D                 +  HV  I+ G++      I
Sbjct: 438 EILESNGSSSMASACGSSLSLMDAGV-------------PISKHVGGIAMGLIYENEEII 484

Query: 175 V--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +  D+   ED+  D+D     T  G +  +Q   +      D     +  A +    +I+
Sbjct: 485 ILSDITGLEDAIGDMDFKVTGTIDG-VSALQLDVKVPGIPIDALSKAIKKAYEGRKSIIE 543

Query: 233 LQKDVIS 239
                IS
Sbjct: 544 KMNQAIS 550



 Score = 95.9 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 81/231 (35%), Gaps = 27/231 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           I++   +  K A GS  V+ GDT + + AT+       +                G  P 
Sbjct: 17  INIETGLLAKQANGSVTVRSGDTIVFSAATMSKEARSDIDFMPLVVDFDEKMYAAGKFP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   R+    R+I R++R +          I      I  D      
Sbjct: 76  --GGFFKRE---GRPSERAILYSRIIDRSIRPLFPKGLRNDVCISSFPLSIDNDFPVDVL 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           +I  +  AL                     G V A+  G +    I++    +    D+D
Sbjct: 131 SIIASSAALC-------------ISDIPFDGPVGAVRVGEIDKKFILNPTIDQIEKSDID 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
              V     +I+ ++GS       +D    ++N A   I  +  +QK++IS
Sbjct: 178 IVIV-GKEDNILMIEGSFNEIP--EDKIIEIINYALPAITKICDIQKELIS 225


>gi|251772265|gb|EES52835.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum
           ferrodiazotrophum]
          Length = 709

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 26/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR   ++R I++   +     GS L   G+T  L+ ATL    +E+    +    H
Sbjct: 315 IRADGRSTTEIRPITIEVGILPRTHGSALFTRGETQSLSVATLGTSDDEQRIDSLEGESH 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         I +  
Sbjct: 375 KRFMLHYNFPAFSVGEVKPMRGPGRREIGHG----NLAERALIPVLPSKDDFPYSIRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           D+++++G T  A + G  +A+ D                 +K  VA I+ G++       
Sbjct: 431 DILESNGSTSMATVCGGTLAMMDAGI-------------PIKAPVAGIAMGLIKEGDRIA 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     TD G +  VQ   +    + +     L  A+     ++ 
Sbjct: 478 ILSDILGIEDHLGDMDFKVTGTDIG-VTAVQMDIKIKGITLEIMKKALEQARVGRIHIMG 536

Query: 233 LQKDVISN 240
             K+ + +
Sbjct: 537 KMKEALPS 544



 Score = 88.6 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 84/236 (35%), Gaps = 32/236 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           + +      + A+G+ ++    T ++ TA   + V      T    +T +Y     + G 
Sbjct: 15  VRIETGRMARQADGAAVLWVEGTVIIATAVAAKTVKP---GTDFLPLTVDYQERAYAAGK 71

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
                 KRE   G+   R     R++ R LR +         Q+I    V+ AD  G T 
Sbjct: 72  IPGGFFKRE---GKPSEREILNSRLVDRPLRPLFPEGFYYDTQVIAS--VVSADRSGLTD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                       + A+  G + G  +++ D        
Sbjct: 127 VMAVVAASTAL-------------TISDIPFDDPLGAVRVGYVDGQFVINPDIEAQERSS 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           +D     T    I+ V+G A+    S++ F   +  A      +I  Q++ +  ++
Sbjct: 174 LDLVVAGTADA-IMMVEGKADE--VSEELFLEAIRTAHAACQPIIAAQRE-LQKKI 225


>gi|83814865|ref|YP_445890.1| polynucleotide phosphorylase/polyadenylase [Salinibacter ruber DSM
           13855]
 gi|83756259|gb|ABC44372.1| polyribonucleotide nucleotidyltransferase [Salinibacter ruber DSM
           13855]
          Length = 722

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 89/245 (36%), Gaps = 20/245 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKH 56
           R+ GR +  +R++ +         GS +   G+T +L + TL      + V     +T  
Sbjct: 332 RIDGRDQTDVRDLWMEVGYLPRVHGSAIFTRGETQVLGSITLGTSDDVQPVDEVFADTDK 391

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G          R+ G S     +  RALR V+         I I+ 
Sbjct: 392 S-FYLHYRFPPFSVGEASYLRGPKRREIGHSM----LAERALRPVIPEQDEFPYTIRINA 446

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           DV++++G +  A++    +AL D    +E       +  V +               + D
Sbjct: 447 DVMESNGSSSMASVCAGSLALMDAGVPIEKPVAGIAMGLVQEDD---------ETTVLTD 497

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I   Q   +    S+D     L  ++D    ++   ++
Sbjct: 498 ILGQEDHLGDMDFKLTGTRDG-ITACQMDMKIEGLSRDVMLKALKQSRDARHHILDRMEE 556

Query: 237 VISNE 241
            I+  
Sbjct: 557 TIAEP 561



 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
           R +SL    ++K A+GS + + GDT +L+TATL + V     +     +    A  G +P
Sbjct: 26  RSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSVNESNFFPLTVDYREKFAAGGKVP 85

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   +     R+I RA+R +          ++              
Sbjct: 86  ---GGFIKRE---GRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFV----------- 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
             I+       D +  +   +          G  A +  G + G  IV+    +    D+
Sbjct: 129 --ISAGQDFDADVIAGVGSSAALMLSGAPFAGPFAEVRVGRVDGDYIVNPTMQQTEESDI 186

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   V      +V V+G AE  +  ++     L++A   I  L + Q  ++  
Sbjct: 187 DL-VVAGKEDALVMVEGEAEEIS--EESMIEALDVAHRSIRRLCEGQHRLVEQ 236


>gi|228902310|ref|ZP_04066467.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           IBL 4222]
 gi|228857279|gb|EEN01782.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           IBL 4222]
          Length = 712

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKIGRVHILN 536

Query: 233 LQKDVISNE 241
               VI+  
Sbjct: 537 HMLSVIAEP 545



 Score = 91.7 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|126652561|ref|ZP_01724726.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. B14905]
 gi|126590689|gb|EAZ84805.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. B14905]
          Length = 704

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 91/245 (37%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R++S    + +   GS L   G T  L   T  A  + ++   +   + 
Sbjct: 314 IRPDGRKLDEIRQLSSETGILQRTHGSGLFTRGQTQALSICTLGALGDVQIIDGLGVEES 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G            G R      +  RAL +V+   ++    I    
Sbjct: 374 KRFMHHYNFPQFSVGE----TGPIRGPGRREIGHGALGERALEAVIPDESVFPYTIRCVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G T  A+I  + +A+ D    ++       +  + KG   +I         + D
Sbjct: 430 EVLESNGSTSQASICASTLAMMDAGVPLKAPVAGIAMGLIKKGEHYSI---------LTD 480

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G +  +Q   +    S++     L  AK     +++    
Sbjct: 481 IQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSRNILEEALTQAKVGRMHILESMLA 539

Query: 237 VISNE 241
            ++  
Sbjct: 540 TLAEP 544



 Score = 89.4 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L+TAT+    + +  +     +       G +P
Sbjct: 14  RPLVIEVGQLAKQANGAVLVRYGDTSVLSTATMSKSPKPLDFFPLTVNYEERLYAAGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q+I       +D  +  
Sbjct: 74  ---GGFIKRE---GRPSEKAILASRLIDRPIRPMFPDGFRNEVQVISMVMSNDSDCTSEM 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  IV+    + +   +
Sbjct: 128 AAMVGSSLALA-------------ISDIPFDGPIAGVQVGYINGEFIVNPTVEQSNQSTI 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             +        I  V+  A      ++     +    + I  +I  Q+ +++ 
Sbjct: 175 HLSVAGNKDA-INMVEAGALEVP--EEVMLEAIMFGHEEIKKIIAFQEQIVAE 224


>gi|49483437|ref|YP_040661.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|257425328|ref|ZP_05601753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257427989|ref|ZP_05604387.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257430622|ref|ZP_05607004.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433382|ref|ZP_05609740.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436224|ref|ZP_05612271.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M876]
 gi|282903829|ref|ZP_06311717.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus C160]
 gi|282905592|ref|ZP_06313447.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908567|ref|ZP_06316397.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282910846|ref|ZP_06318649.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914051|ref|ZP_06321838.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M899]
 gi|282916534|ref|ZP_06324292.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus D139]
 gi|282918973|ref|ZP_06326708.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus C427]
 gi|282924096|ref|ZP_06331772.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus C101]
 gi|283770338|ref|ZP_06343230.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus H19]
 gi|283958017|ref|ZP_06375468.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293501083|ref|ZP_06666934.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293526631|ref|ZP_06671316.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M1015]
 gi|297591281|ref|ZP_06949919.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MN8]
 gi|81651256|sp|Q6GHG1|PNP_STAAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|49241566|emb|CAG40252.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|257271785|gb|EEV03923.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257274830|gb|EEV06317.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257278750|gb|EEV09369.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257281475|gb|EEV11612.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284506|gb|EEV14626.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M876]
 gi|282314068|gb|EFB44460.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus C101]
 gi|282316783|gb|EFB47157.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus C427]
 gi|282319021|gb|EFB49373.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus D139]
 gi|282322119|gb|EFB52443.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M899]
 gi|282325451|gb|EFB55760.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282327629|gb|EFB57912.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282330884|gb|EFB60398.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282595447|gb|EFC00411.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus C160]
 gi|283460485|gb|EFC07575.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus H19]
 gi|283790166|gb|EFC28983.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290920703|gb|EFD97766.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291096088|gb|EFE26349.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|297576167|gb|EFH94883.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MN8]
 gi|312438346|gb|ADQ77417.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|315194162|gb|EFU24555.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus CGS00]
          Length = 698

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +     GS L   G T  L+     A  + ++   +   + 
Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RAL+ ++  +A     I I  
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALKYIIPDTADFPYTIRIVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G +  A+I G+ +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G I  +Q   +    +++     L  A+    +++ 
Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMN 539

Query: 233 LQKDVISNE 241
                I   
Sbjct: 540 HMLQTIDQP 548



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 28/232 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ LV++GDT +L+TAT          +     +       G +P
Sbjct: 15  RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR G  +    R+I R +R +         QI+        D   + 
Sbjct: 75  ---GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  I++    E     +
Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRL 175

Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D       D+ ++VE    A  +  ++      +    + I  L+  Q+ ++
Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITEQEMLEAIFFGHEEIQRLVDFQQQIV 223


>gi|302332880|gb|ADL23073.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 698

 Score =  112 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +     GS L   G T  L+     A  + ++   +   + 
Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RAL+ ++  +A     I I  
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALKYIIPDTADFPYTIRIVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G +  A+I G+ +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G I  +Q   +    +++     L  A+    +++ 
Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMN 539

Query: 233 LQKDVISNE 241
                I   
Sbjct: 540 HMLQTIDQP 548



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 28/232 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ LV++GDT +L+TAT          +     +       G +P
Sbjct: 15  RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR G  +    R+I R +R +         QI+        D   + 
Sbjct: 75  ---GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  I++    E     +
Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRL 175

Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D       D+ ++VE    A  +  ++      +    + I  L+  Q+ ++
Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITEQEMLEAIFFGHEEIQRLVDFQQQIV 223


>gi|294507800|ref|YP_003571858.1| polyribonucleotide nucleotidyltransferase [Salinibacter ruber M8]
 gi|294344128|emb|CBH24906.1| polyribonucleotide nucleotidyltransferase [Salinibacter ruber M8]
          Length = 745

 Score =  112 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 89/245 (36%), Gaps = 20/245 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKH 56
           R+ GR +  +R++ +         GS +   G+T +L + TL      + V     +T  
Sbjct: 355 RIDGRDQTDVRDLWMEVGYLPRVHGSAIFTRGETQVLGSITLGTSDDVQPVDEVFADTDK 414

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G          R+ G S     +  RALR V+         I I+ 
Sbjct: 415 S-FYLHYRFPPFSVGEASYLRGPKRREIGHSM----LAERALRPVIPEQDAFPYTIRINA 469

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           DV++++G +  A++    +AL D    +E       +  V +               + D
Sbjct: 470 DVMESNGSSSMASVCAGSLALMDAGVPIEKPVAGIAMGLVQEDD---------ETTVLTD 520

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I   Q   +    S+D     L  ++D    ++   ++
Sbjct: 521 ILGQEDHLGDMDFKLTGTRDG-ITACQMDMKIEGLSRDVMLKALKQSRDARHHILDRMEE 579

Query: 237 VISNE 241
            I+  
Sbjct: 580 TIAEP 584



 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
           R +SL    ++K A+GS + + GDT +L+TATL + V     +     +    A  G +P
Sbjct: 49  RSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSVNESNFFPLTVDYREKFAAGGKVP 108

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   +     R+I RA+R +          ++              
Sbjct: 109 ---GGFIKRE---GRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFV----------- 151

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
             I+       D +  +   +          G  A +  G + G  IV+    +    D+
Sbjct: 152 --ISAGQDFDADVIAGVGSSAALMLSGAPFAGPFAEVRVGRVDGDYIVNPTMQQTEESDI 209

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   V      +V V+G AE  +  ++     L++A   I  L + Q  ++  
Sbjct: 210 DL-VVAGKEDALVMVEGEAEEIS--EESMIEALDVAHRSIRRLCEGQHRLVEQ 259


>gi|170077686|ref|YP_001734324.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. PCC
           7002]
 gi|226704826|sp|B1XJU0|PNP_SYNP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169885355|gb|ACA99068.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. PCC
           7002]
          Length = 714

 Score =  112 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 54/235 (22%), Positives = 92/235 (39%), Gaps = 27/235 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLT---TATLEEKVPMWIRNTKHGWITAEYGMLP 67
           REI L     +  A GS L++ GDT +L    TA   + +        +       G +P
Sbjct: 13  REIRLKTGLFAPQAGGSVLIESGDTAVLVSATTAPGRQGIDFLPLLVDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   GR   R+  I R+I R +R +         QI+     +  +     
Sbjct: 73  ---GGYLRRE---GRPPERATLISRLIDRPMRPLFPQWLRDDIQIVATTLSLDEEVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA VA                      G +AA+  G++    I++  Y E    D+
Sbjct: 127 LAVTGASVATLLAGL-------------PFYGPMAAVRVGLVGDDFILNPTYREMMNGDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           D     T  G ++ V+  A +    +      ++ A + I +LI+ Q+  +  E+
Sbjct: 174 DLVVAGTPDG-VIMVEAGANQ--LPEADMIEAIDFAYEAIQELIEAQR-ALMKEL 224



 Score = 98.6 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 89/246 (36%), Gaps = 19/246 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMW----IRNTK 55
           +R+ GR+ +Q+R IS    V   A  GS L   G T +L+ ATL           +  + 
Sbjct: 323 VRVDGRKLDQVRPISCRTAVLPRAVHGSGLFNRGLTQVLSIATLGTPGDAQEMDDLHPSD 382

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P S G      +   R+ G       +  RAL  V+         I + 
Sbjct: 383 EKRYLHHYNFPPYSVGETRPMRSPGRREIGHG----ALAERALLPVLPPKDEFPYVIRVV 438

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            +V+ ++G T   ++ G+ +AL D    +    +   +  + +G              + 
Sbjct: 439 SEVLSSNGSTSMGSVCGSTLALMDAGVPIAKPVSGAAMGLIKEGKEV---------RILT 489

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T  G I  +Q   +    + +     +  A      +++   
Sbjct: 490 DIQGIEDFLGDMDFKVAGTADG-ITALQMDMKITGLAVEVVAEAIKQALPARLHILEKMT 548

Query: 236 DVISNE 241
           DVI+  
Sbjct: 549 DVIAEP 554


>gi|150026085|ref|YP_001296911.1| polynucleotide phosphorylase/polyadenylase [Flavobacterium
           psychrophilum JIP02/86]
 gi|187610264|sp|A6H185|PNP_FLAPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|149772626|emb|CAL44109.1| Polyribonucleotide nucleotidyltransferase [Flavobacterium
           psychrophilum JIP02/86]
          Length = 711

 Score =  112 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 86/244 (35%), Gaps = 20/244 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           RL GR+  ++R I           GS L   G+T  L TATL    E             
Sbjct: 319 RLDGRKTTEIRPIWCEVDYLPSVHGSALFTRGETQALATATLGTSREANQIDSPSQQGEE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG        S R+ G       +  RAL++++         I +  +
Sbjct: 379 KFYLHYNFPPFSTGEARPLRGTSRREVGHG----NLAQRALKNMIPAD--CPYTIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V++++G +  A +    ++L D    M    +   +  +  G   A+         + D+
Sbjct: 433 VLESNGSSSMATVCAGTLSLMDAGIQMIRPVSGIAMGLITDGERFAV---------LSDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I   Q   +      +   A L  A+D    ++ +  + 
Sbjct: 484 LGDEDHLGDMDFKVTGTSEG-ITACQMDIKIDGLKYEIMEAALAQARDGRLHILNILTET 542

Query: 238 ISNE 241
           ++  
Sbjct: 543 LATP 546



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 78/228 (34%), Gaps = 27/228 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHGWITAEYGML 66
           R I++    ++K A+GS +V+ G T +L T     K    I        +    A  G  
Sbjct: 16  RNITIETGRLAKQADGSVVVRIGKTVILGTVVSSRKATPGIDFLPLTVDYREKFAAAGRF 75

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KREA   R         R++ R LR +         Q++I   ++  D    
Sbjct: 76  P---GGFFKREA---RPSDSEVLTMRLVDRVLRPLFPSDYHAEVQVMI--QLMSHD---- 123

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                     + D L  +   +         +  ++    G + G  I++    +    D
Sbjct: 124 -------EEVMPDALAGLAASAALALSDIPFETLISEARVGRIDGKFIINPSRAQLELSD 176

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           +D   +   +  I  V+G  E    S+      +  A + I   I  Q
Sbjct: 177 IDM-MIGASTDSIAMVEG--EMKEISEAEMLEAIKFAHEHIKVQIAAQ 221


>gi|21282886|ref|NP_645974.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49486113|ref|YP_043334.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|253731893|ref|ZP_04866058.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|297208080|ref|ZP_06924511.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300912161|ref|ZP_07129604.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|81649409|sp|Q6G9T9|PNP_STAAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81762564|sp|Q8NWY9|PNP_STAAW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|21204325|dbj|BAB95022.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49244556|emb|CAG42985.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|253724303|gb|EES93032.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|296887323|gb|EFH26225.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300886407|gb|EFK81609.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|329733632|gb|EGG69960.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 698

 Score =  112 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +     GS L   G T  L+     A  + ++   +   + 
Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RAL+ ++  +A     I I  
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALKYIIPDTADFPYTIRIVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G +  A+I G+ +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G I  +Q   +    +++     L  A+    +++ 
Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMN 539

Query: 233 LQKDVISNE 241
                I   
Sbjct: 540 HMLQTIDQP 548



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 28/232 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ LV++GDT +L+TAT          +     +       G +P
Sbjct: 15  RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR G  +    R+I R +R +         QI+        D   + 
Sbjct: 75  ---GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  I++    E     +
Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRL 175

Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D       D+ ++VE    A  +  ++      +    + I  L+  Q+ ++
Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITEQEMLEAIFFGHEEIQRLVDFQQQIV 223


>gi|298694566|gb|ADI97788.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus ED133]
          Length = 698

 Score =  112 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +     GS L   G T  L+     A  + ++   +   + 
Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RAL+ ++  +A     I I  
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALKYIIPDTADFPYTIRIVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G +  A+I G+ +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G I  +Q   +    +++     L  A+    +++ 
Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMN 539

Query: 233 LQKDVISNE 241
                I   
Sbjct: 540 HMLQTIDQP 548



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 28/232 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ LV++GDT +L+TAT          +     +       G +P
Sbjct: 15  RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR G  +    R+I R +R +         QI+        D   + 
Sbjct: 75  ---GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  I++    E     +
Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRL 175

Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D       D+ ++VE    A  +  ++      +    + I  L+  Q+ ++
Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITEQEMLEAIFFGHEEIQRLVDFQQQIV 223


>gi|269940765|emb|CBI49147.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus TW20]
          Length = 698

 Score =  112 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +     GS L   G T  L+     A  + ++   +   + 
Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RAL+ ++  +A     I I  
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALKYIIPDTADFPYTIRIVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G +  A+I G+ +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G I  +Q   +    +++     L  A+    +++ 
Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMN 539

Query: 233 LQKDVISNE 241
                I   
Sbjct: 540 HMLQTIDQP 548



 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 86/231 (37%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ LV++GDT +L+TAT          +     +       G +P
Sbjct: 15  RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR G  +    R+I R +R +         QI+        D   + 
Sbjct: 75  ---GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  I++    E     +
Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D          I  V+  A     ++      +    + I  L+  Q+ ++
Sbjct: 176 DLEVA-GHKDAINMVEAGASE--ITEQEMLEAIFFGHEEIQRLVDFQQQIV 223


>gi|15924264|ref|NP_371798.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15926857|ref|NP_374390.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus N315]
 gi|57651844|ref|YP_186150.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus COL]
 gi|87160870|ref|YP_493864.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88194984|ref|YP_499784.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|148267764|ref|YP_001246707.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150393823|ref|YP_001316498.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|151221395|ref|YP_001332217.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|156979595|ref|YP_001441854.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|161509440|ref|YP_001575099.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|221142508|ref|ZP_03567001.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus str. JKD6009]
 gi|253316410|ref|ZP_04839623.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|253733488|ref|ZP_04867653.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|255006061|ref|ZP_05144662.2| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257795670|ref|ZP_05644649.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9781]
 gi|258416073|ref|ZP_05682341.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus A9763]
 gi|258421656|ref|ZP_05684580.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9719]
 gi|258423885|ref|ZP_05686770.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9635]
 gi|258434812|ref|ZP_05688886.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9299]
 gi|258444612|ref|ZP_05692941.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8115]
 gi|258447555|ref|ZP_05695699.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A6300]
 gi|258449397|ref|ZP_05697500.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus A6224]
 gi|258452573|ref|ZP_05700579.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A5948]
 gi|258454776|ref|ZP_05702740.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus A5937]
 gi|262048163|ref|ZP_06021050.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           D30]
 gi|262051336|ref|ZP_06023559.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           930918-3]
 gi|269202891|ref|YP_003282160.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282892762|ref|ZP_06300997.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8117]
 gi|282920518|ref|ZP_06328239.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9765]
 gi|282927616|ref|ZP_06335232.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A10102]
 gi|284024267|ref|ZP_06378665.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus 132]
 gi|294848270|ref|ZP_06789017.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9754]
 gi|295406211|ref|ZP_06816018.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8819]
 gi|296274832|ref|ZP_06857339.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297244439|ref|ZP_06928322.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8796]
 gi|304381162|ref|ZP_07363815.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|81694630|sp|Q5HGF7|PNP_STAAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81705784|sp|Q7A5X7|PNP_STAAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81781693|sp|Q99UJ8|PNP_STAAM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|117940100|sp|Q2FHG4|PNP_STAA3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|117940102|sp|Q2FZ20|PNP_STAA8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611294|sp|A7X1Q8|PNP_STAA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611295|sp|A6QGH3|PNP_STAAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037316|sp|A6U193|PNP_STAA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037317|sp|A5ISF8|PNP_STAA9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037318|sp|A8Z3V4|PNP_STAAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|13701074|dbj|BAB42369.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus N315]
 gi|14247044|dbj|BAB57436.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|57286030|gb|AAW38124.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus COL]
 gi|87126844|gb|ABD21358.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202542|gb|ABD30352.1| polyribonucleotide nucleotidyltransferase, putative [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|147740833|gb|ABQ49131.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946275|gb|ABR52211.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|150374195|dbj|BAF67455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|156721730|dbj|BAF78147.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|160368249|gb|ABX29220.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|253728542|gb|EES97271.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|257789642|gb|EEV27982.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9781]
 gi|257839221|gb|EEV63697.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus A9763]
 gi|257842342|gb|EEV66767.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9719]
 gi|257845914|gb|EEV69943.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9635]
 gi|257849173|gb|EEV73155.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9299]
 gi|257850105|gb|EEV74058.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8115]
 gi|257853746|gb|EEV76705.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A6300]
 gi|257857385|gb|EEV80283.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus A6224]
 gi|257859791|gb|EEV82633.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A5948]
 gi|257863159|gb|EEV85923.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
           aureus A5937]
 gi|259160711|gb|EEW45732.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           930918-3]
 gi|259163729|gb|EEW48284.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           D30]
 gi|262075181|gb|ACY11154.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282590619|gb|EFB95696.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A10102]
 gi|282594180|gb|EFB99167.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9765]
 gi|282764759|gb|EFC04884.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8117]
 gi|283470489|emb|CAQ49700.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Staphylococcus aureus subsp. aureus
           ST398]
 gi|285816956|gb|ADC37443.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           04-02981]
 gi|294825070|gb|EFG41492.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A9754]
 gi|294968799|gb|EFG44821.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8819]
 gi|297178469|gb|EFH37715.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           A8796]
 gi|302751097|gb|ADL65274.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304340145|gb|EFM06086.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|312829668|emb|CBX34510.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315131068|gb|EFT87052.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|315198516|gb|EFU28845.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320140909|gb|EFW32756.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320144375|gb|EFW36141.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323441055|gb|EGA98762.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           O11]
 gi|323443924|gb|EGB01535.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           O46]
 gi|329313944|gb|AEB88357.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329727448|gb|EGG63904.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329727820|gb|EGG64271.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 698

 Score =  112 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +     GS L   G T  L+     A  + ++   +   + 
Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RAL+ ++  +A     I I  
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALKYIIPDTADFPYTIRIVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G +  A+I G+ +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G I  +Q   +    +++     L  A+    +++ 
Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMN 539

Query: 233 LQKDVISNE 241
                I   
Sbjct: 540 HMLQTIDQP 548



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 28/232 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ LV++GDT +L+TAT          +     +       G +P
Sbjct: 15  RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR G  +    R+I R +R +         QI+        D   + 
Sbjct: 75  ---GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  I++    E     +
Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRL 175

Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D       D+ ++VE    A  +  ++      +    + I  L+  Q+ ++
Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITEQEMLEAIFFGHEEIQRLVDFQQQIV 223


>gi|330685657|gb|EGG97298.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis VCU121]
          Length = 699

 Score =  112 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 90/234 (38%), Gaps = 26/234 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +   A GS L   G T  L+     A  + ++   +   + 
Sbjct: 318 IRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RAL+ ++  ++     + I  
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALKYIIPDTSDFPYTVRIVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G +  A+I G+ +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED+  D+D     T  G I  +Q   +    +++     L  A+  
Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTKDG-ITAIQMDIKIDGLTREVIEEALEQARQG 533



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 28/232 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ LV++GDT +L+TAT          +     +       G +P
Sbjct: 15  RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR G  +    R+I R +R +         QI+        D     
Sbjct: 75  ---GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNIVLSADPDCSPEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A ++ G + G  +++    E     +
Sbjct: 129 AAMIGSSMALS-------------VSDIPFLGPIAGVNVGYVDGKYVINPTVAEKEVSRL 175

Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D       D+ ++VE    A  +  ++      +    D I  L+  Q+++I
Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITESEMLEAIFFGHDEIKRLVAFQQEII 223


>gi|51599057|ref|YP_073245.1| polynucleotide phosphorylase/polyadenylase [Borrelia garinii PBi]
 gi|51573628|gb|AAU07653.1| polyribonucleotide nucleotidyltransferase [Borrelia garinii PBi]
          Length = 715

 Score =  112 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 91/248 (36%), Gaps = 27/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR  N++R+I     +     GS L   G+T  L       +++E++   I   K 
Sbjct: 309 IRTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 368

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G    R     R+ G       +  RAL S+V         I +  
Sbjct: 369 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 423

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++++++G +  A +    ++L                   +K  VA I+ G++       
Sbjct: 424 EILESNGSSSMATVCAGSMSLMSAGV-------------PVKRQVAGIAMGLISEGDKYV 470

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I   Q   +    ++      L  A+     ++ 
Sbjct: 471 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKHLMRDALEQARIGRMHILS 529

Query: 233 LQKDVISN 240
           +   VIS+
Sbjct: 530 VMDTVISD 537



 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 86/239 (35%), Gaps = 32/239 (13%)

Query: 5   GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59
           GR  +++           K A GS L  +G + +L T      + E +     + ++   
Sbjct: 4   GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEK 58

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
               G +P   G  +KRE   G+   +   + R+I R +R + D       Q+I      
Sbjct: 59  YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 112

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
                     +  A+ A+             F       G +AA+    L G  IV+  +
Sbjct: 113 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGKFIVNPSF 159

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E    D+D   V      I  V+G A     S+D   + ++ A + I  +   QK+ +
Sbjct: 160 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VSEDILLSAIDGAHEYIKQICNAQKEFL 215


>gi|313891639|ref|ZP_07825246.1| polyribonucleotide nucleotidyltransferase [Dialister
           microaerophilus UPII 345-E]
 gi|313119917|gb|EFR43102.1| polyribonucleotide nucleotidyltransferase [Dialister
           microaerophilus UPII 345-E]
          Length = 697

 Score =  112 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 85/235 (36%), Gaps = 28/235 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-----K 55
           +R  GR  +++R I+    +     GS L   G T  LT  TL       I +      +
Sbjct: 311 IRPDGRALDEIRPITCEVGMIPRTHGSALFTRGQTQALTITTLAPMNETQIIDDLTLVNE 370

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I  +Y       G          R+ G       +  RAL  V+         I + 
Sbjct: 371 KRYIH-QYNFPSYCVGETKSSRGPGRREIGHG----ALAERALEPVIPSVDEFPYAIRVV 425

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            ++++++G +  A++ G+ ++L +                 +   VA I+ G++      
Sbjct: 426 SEILESNGSSSQASVCGSTMSLMNAGV-------------PIHAPVAGIAMGLVNEGEHF 472

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             + D+   ED+  D+D     T  G I  +Q   +    S++   A L  A   
Sbjct: 473 TILTDIQGMEDALGDMDFKVAGTAKG-ITAIQMDIKIHGLSREILMAALKQAHKG 526



 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 86/234 (36%), Gaps = 27/234 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +      K A GS LV++GDT +L   T      E    +     +       G +
Sbjct: 12  RPLIIETGKMAKQASGSVLVRYGDTVVLVATTWSKEPREGTDFFPLTVDYEEKMYSVGKM 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  ++RE   GR G  +    R+I R +R + D        ++     +  D    
Sbjct: 72  P---GGFLRRE---GRPGNSAVLNARLIDRPIRPLFDKRCRHDVHVVATVLSVDYDNAPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              + GA  ++                     G VA +  G + G  +V+    +     
Sbjct: 126 LCGLLGASASIA-------------ISDIPWDGPVAGVRVGKVDGEFVVNPTQEQLERST 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ++     +++  I+ V+G A+ A  S++     +  A   I  L++ QK +I  
Sbjct: 173 MNITVAGSETA-ILMVEGGAKEA--SEEEVLDAIMYAHTVIKQLVEFQKKIIEK 223


>gi|187471096|sp|Q65ZW8|PNP_BORGA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 721

 Score =  112 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 91/248 (36%), Gaps = 27/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR  N++R+I     +     GS L   G+T  L       +++E++   I   K 
Sbjct: 315 IRTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G    R     R+ G       +  RAL S+V         I +  
Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++++++G +  A +    ++L                   +K  VA I+ G++       
Sbjct: 430 EILESNGSSSMATVCAGSMSLMSAGV-------------PVKRQVAGIAMGLISEGDKYV 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I   Q   +    ++      L  A+     ++ 
Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKHLMRDALEQARIGRMHILS 535

Query: 233 LQKDVISN 240
           +   VIS+
Sbjct: 536 VMDTVISD 543



 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 86/239 (35%), Gaps = 32/239 (13%)

Query: 5   GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59
           GR  +++           K A GS L  +G + +L T      + E +     + ++   
Sbjct: 10  GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEK 64

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
               G +P   G  +KRE   G+   +   + R+I R +R + D       Q+I      
Sbjct: 65  YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
                     +  A+ A+             F       G +AA+    L G  IV+  +
Sbjct: 119 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGKFIVNPSF 165

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E    D+D   V      I  V+G A     S+D   + ++ A + I  +   QK+ +
Sbjct: 166 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VSEDILLSAIDGAHEYIKQICNAQKEFL 221


>gi|27467869|ref|NP_764506.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis ATCC 12228]
 gi|57866764|ref|YP_188423.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis RP62A]
 gi|251810705|ref|ZP_04825178.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282876294|ref|ZP_06285161.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis SK135]
 gi|293366762|ref|ZP_06613438.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|81674891|sp|Q5HPR7|PNP_STAEQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81843823|sp|Q8CST1|PNP_STAES RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|27315414|gb|AAO04548.1|AE016747_45 polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis ATCC 12228]
 gi|57637422|gb|AAW54210.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis RP62A]
 gi|251805865|gb|EES58522.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295319|gb|EFA87846.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis SK135]
 gi|291319063|gb|EFE59433.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329736337|gb|EGG72609.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis VCU028]
 gi|329736660|gb|EGG72926.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis VCU045]
          Length = 701

 Score =  112 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 18/230 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +   A GS L   G T  L+     A  + ++   +     
Sbjct: 318 IRPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEVE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RALR ++  +      I I  
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALRYIIPDTQDFPYTIRIVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G +  A+I G+ +AL D    ++       +  V +     I         + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTI---------LTD 484

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           +   ED+  D+D     T  G I  +Q   +    +++     L  A+  
Sbjct: 485 IQGMEDALGDMDFKVAGTKDG-ITAIQMDIKIDGLTREVIEEALEQARQG 533



 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 90/232 (38%), Gaps = 28/232 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ LV++GDT +L+TAT          +     +       G +P
Sbjct: 15  RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR G  +    R+I R +R +         QI+        D     
Sbjct: 75  ---GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  +++    +     +
Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGKYVINPSVADKEISRL 175

Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D       D+ ++VE    A  +  ++      +    + I  L+  Q+++I
Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITESEMLEAIFFGHEEIKRLVAFQQEII 223


>gi|329724343|gb|EGG60855.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis VCU144]
          Length = 701

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 18/230 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +   A GS L   G T  L+     A  + ++   +     
Sbjct: 318 IRPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEVE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RALR ++  +      I I  
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALRYIIPDTQDFPYTIRIVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G +  A+I G+ +AL D    ++       +  V +     I         + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTI---------LTD 484

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           +   ED+  D+D     T  G I  +Q   +    +++     L  A+  
Sbjct: 485 IQGMEDALGDMDFKVAGTKDG-ITAIQMDIKIDGLTREVIEEALEQARQG 533



 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 90/232 (38%), Gaps = 28/232 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ LV++GDT +L+TAT          +     +       G +P
Sbjct: 15  RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR G  +    R+I R +R +         QI+        D     
Sbjct: 75  ---GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  +++    +     +
Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGKYVINPSVADKEISRL 175

Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D       D+ ++VE    A  +  ++      +    + I  L+  Q+++I
Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITESEMLEAIFFGHEEIKRLVAFQQEII 223


>gi|269215563|ref|ZP_06159417.1| polyribonucleotide nucleotidyltransferase [Slackia exigua ATCC
           700122]
 gi|269131050|gb|EEZ62125.1| polyribonucleotide nucleotidyltransferase [Slackia exigua ATCC
           700122]
          Length = 769

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 90/241 (37%), Gaps = 26/241 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPMW--IRNTKHG 57
           R  GR   ++R + +         GS L + G T +++ ATL    +      I      
Sbjct: 345 RADGRAPEEIRPLYIRPGYLPRVHGSGLFQRGQTQVMSVATLGLLNEAQRLDTIDPQTTR 404

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
               +Y   P  TG   +  A   R+ G       +  RA+  V+         I +  +
Sbjct: 405 RYMHQYNFPPYCTGEVGRMGAPKRREVGHG----ALAERAILPVLPNEDEFPYSIRVVSE 460

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           V++++G +  A+  G+ +AL D                 +K  V+ ++ G++    G  I
Sbjct: 461 VLESNGSSSMASTCGSCLALMDAGV-------------PIKAPVSGVAMGLIKEDDGVVI 507

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    S +     L  AK+  A ++  
Sbjct: 508 LSDIQGLEDFLGDMDFKVTGTPEG-ITALQMDNKARGLSTEILGRALAQAKEGRAHILSA 566

Query: 234 Q 234
            
Sbjct: 567 M 567



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 80/230 (34%), Gaps = 28/230 (12%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRSTG 71
                ++K A G+ LV+ G+T +L T+ +   E+    +             G +P   G
Sbjct: 47  FETGELAKQATGAVLVRQGETTVLVTSVISKEEKDYDFFPLTVDFMEKMYAVGRIP---G 103

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
             +KRE   GR   +     RM+ R +R            ++     I  +       + 
Sbjct: 104 GYLKRE---GRASDKGTLTARMVDRPIRPGFAEGFKQEVHVVATTFAIDGENAPDCMCVG 160

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--YPIVDLDYGEDSTIDVDA 189
           G               +     S    G VA +           IV+  Y E  T D++ 
Sbjct: 161 G-------------ASAALLIASAPFDGPVACVRIARNAETREFIVNPTYAEQETSDLEL 207

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
               T   +I  V+  A++    ++   A +N  ++ IA   + Q + +S
Sbjct: 208 TIAGTKD-YISMVEAGADQ--VGEEDMLAAMNFGQEAIAAFCEKQAEFLS 254


>gi|242242557|ref|ZP_04797002.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis W23144]
 gi|242233984|gb|EES36296.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis W23144]
 gi|319401436|gb|EFV89646.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           epidermidis FRI909]
          Length = 701

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 18/230 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +   A GS L   G T  L+     A  + ++   +     
Sbjct: 318 IRPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEVE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RALR ++  +      I I  
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALRYIIPDTQDFPYTIRIVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G +  A+I G+ +AL D    ++       +  V +     I         + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTI---------LTD 484

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           +   ED+  D+D     T  G I  +Q   +    +++     L  A+  
Sbjct: 485 IQGMEDALGDMDFKVAGTKDG-ITAIQMDIKIDGLTREVIEEALEQARQG 533



 Score = 89.0 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 90/232 (38%), Gaps = 28/232 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ LV++GDT +L+TAT          +     +       G +P
Sbjct: 15  RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR G  +    R+I R +R +         QI+        D     
Sbjct: 75  ---GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  +++    +     +
Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGKYVINPSVADKEISRL 175

Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D       D+ ++VE    A  +  ++      +    + I  L+  Q+++I
Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITESEMLEAIFFGHEEIKRLVAFQQEII 223


>gi|322382340|ref|ZP_08056247.1| polynucleotide phosphorylase-like protein/polyadenylase-like
           protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153693|gb|EFX46068.1| polynucleotide phosphorylase-like protein/polyadenylase-like
           protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 699

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 87/242 (35%), Gaps = 26/242 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR  +++R I     +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 307 VRPDGRALDEIRPIECDISLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLDLEET 366

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      A   R+ G       +  RA+  V+         I +  
Sbjct: 367 KRFMHHYNFPPFSVGEARPLRAPGRREIGHG----ALGARAIEQVIPSEEEFPYTIRLVS 422

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +VI+++G T  A+I  + +AL D                 +K  VA I+ G++       
Sbjct: 423 EVIESNGSTSQASICASMLALMDAGV-------------PIKAPVAGIAMGLIKDGQHFS 469

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +     +D     L  AK+    +++
Sbjct: 470 ILTDIQGMEDHLGDMDFKVAGTAKG-VTALQMDIKINGIDRDILHQALTQAKEGRMFILE 528

Query: 233 LQ 234
             
Sbjct: 529 KM 530



 Score = 95.2 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 88/233 (37%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +SL    ++K A  S LV++GDT +L T T     + +  +     +       G +P
Sbjct: 6   RPLSLETGRLAKQANASVLVRYGDTVVLCTVTASSEPKDLDFFPLTVNYEERLYAVGKIP 65

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  +     
Sbjct: 66  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFPEGFRNEVQVVAIVMSVDQECSPEI 119

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+TG   AL                +    G +  +  G + G  +++    + +  D+
Sbjct: 120 AAMTGVSAALS-------------ISNIPFNGPIGGVIVGRIDGEFVINPTTEQAAKSDI 166

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 T    I+ V+  A  A   ++     +    ++I  ++ +Q+  +  
Sbjct: 167 HLTVAGTKDA-IMMVEAGA--AEVPEEVMLEAIMFGHEQIKKIVAVQEQFVEE 216


>gi|229104369|ref|ZP_04235038.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-28]
 gi|228679067|gb|EEL33275.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-28]
          Length = 712

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILN 536

Query: 233 LQKDVISNE 241
               VI+  
Sbjct: 537 HMLSVIAEP 545



 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|224534158|ref|ZP_03674738.1| polyribonucleotide nucleotidyltransferase [Borrelia spielmanii
           A14S]
 gi|224514583|gb|EEF84897.1| polyribonucleotide nucleotidyltransferase [Borrelia spielmanii
           A14S]
          Length = 724

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 27/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR  N++R+I     +     GS L   G+T  L       +++E++   I   K 
Sbjct: 315 IRTDGRTPNEIRDILAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G    R     R+ G       +  RAL S+V         I +  
Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++++++G +  A +    ++L                   +K  VA I+ G++       
Sbjct: 430 EILESNGSSSMATVCAGSMSLMSAGV-------------PVKRQVAGIAMGLISEGDKYV 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T++G I   Q   +    ++      L  A+     ++ 
Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTENG-ITGFQMDIKIENVTKHLMRDALEQARIGRIHILS 535

Query: 233 LQKDVISN 240
           +   +ISN
Sbjct: 536 IMNSIISN 543



 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 85/239 (35%), Gaps = 32/239 (13%)

Query: 5   GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWI 59
           GR  +++           K A GS L  +G + +L T        E +     + ++   
Sbjct: 10  GR--DEL---VFETGFIAKQANGSVLATYGGSSVLATVCCSSNAREDLDFVPLSVEYNEK 64

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
               G +P   G  +KRE   G+   +   + R+I R +R + D       Q+I      
Sbjct: 65  YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
                     +  A+ A+             F       G +AA+    L G  IV+  +
Sbjct: 119 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGKFIVNPSF 165

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E    D+D   V      I  V+G A     S+D   + ++ A + I  +   QK+ +
Sbjct: 166 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VSEDILLSAIDSAHEYIKQICNAQKEFL 221


>gi|91216373|ref|ZP_01253340.1| putative polyribonucleotide nucleotidyltransferase [Psychroflexus
           torquis ATCC 700755]
 gi|91185511|gb|EAS71887.1| putative polyribonucleotide nucleotidyltransferase [Psychroflexus
           torquis ATCC 700755]
          Length = 683

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 86/243 (35%), Gaps = 20/243 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +RL GR+ +++R I           GS +   G+T  L T TL    E        +   
Sbjct: 281 LRLDGRKTDEIRPIWCEVAYLPSVHGSAIFTRGETQALATVTLGTSREASTIDMPTHQGE 340

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P  TG        S R+ G       +  RAL+ ++  S      + I  
Sbjct: 341 EKFYLHYNFPPFCTGEAYPIRGTSRREIGHG----NLAQRALKGMIPES--NPYTVRIVS 394

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G +  A +    +A+ D    M+   +   +  +  G   A+         + D
Sbjct: 395 EVLESNGSSSMATVCAGTMAMMDAGIKMKKPVSGIAMGLISDGDRHAV---------LSD 445

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I   Q   +      +     L  A+     +++   D
Sbjct: 446 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKVKGLPYEILVKALQQARAGRLHILEKLTD 504

Query: 237 VIS 239
            IS
Sbjct: 505 TIS 507



 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 66/206 (32%), Gaps = 25/206 (12%)

Query: 32  FGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
            GDT LL T      E K+  +     +    A  G  P   G   KREA        + 
Sbjct: 1   MGDTMLLCTVVSSYKESKMDFFPLTVDYREKFAAAGRYP---GGFFKREARPSDGEVLTM 57

Query: 89  EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
              R++ R LR +         Q++I       D              + D L  +   +
Sbjct: 58  ---RIVDRVLRPLFPSDYRTETQVMIQLMSHDED-------------VMPDALAGLAASA 101

Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
                    +  ++      + G  +++    +    D+D   +      ++ V+G  E 
Sbjct: 102 AIQLSDIPFETAISEARVARINGEFVINPSRSQLKESDIDM-IIGASMDSVMMVEG--EM 158

Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQ 234
              S++     +  A + I   ++ Q
Sbjct: 159 KEISEEEMAEAIQFAHEHIKKQVEAQ 184


>gi|216263697|ref|ZP_03435692.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia afzelii ACA-1]
 gi|215980541|gb|EEC21362.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia afzelii ACA-1]
          Length = 722

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 27/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR  N++R+I     +     GS L   G+T  L       +++E++   I   K 
Sbjct: 315 IRTDGRTPNEIRDILAEVDILSRTHGSSLFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G    R     R+ G       +  RAL S++         I +  
Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMIPGKNDFPYTIRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++++++G +  A +    ++L                   +K  VA I+ G++       
Sbjct: 430 EILESNGSSSMATVCAGSMSLMSAGV-------------PVKRQVAGIAMGLISEGDKYV 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T++G I   Q   +    ++      L  A+     ++ 
Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTENG-ITGFQMDIKIENVTKQLMRDALEQARVGRIHILS 535

Query: 233 LQKDVISN 240
           +   VISN
Sbjct: 536 IMNSVISN 543



 Score = 91.7 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 86/239 (35%), Gaps = 32/239 (13%)

Query: 5   GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59
           GR  +++           K A GS L  +G + +L T      + E +     + ++   
Sbjct: 10  GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEK 64

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
               G +P   G  +KRE   G+   +   + R+I R +R + D       Q+I      
Sbjct: 65  YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
                     +  A+ A+             F       G +AA+    L G  IV+  +
Sbjct: 119 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGKFIVNPSF 165

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E    D+D   V      I  V+G A     S+D   + ++ A + I  +   QK+ +
Sbjct: 166 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VSEDILLSAIDSAHEYIKQICNAQKEFL 221


>gi|197117696|ref|YP_002138123.1| polynucleotide phosphorylase/polyadenylase [Geobacter bemidjiensis
           Bem]
 gi|257096691|sp|B5EI63|PNP_GEOBB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|197087056|gb|ACH38327.1| polyribonucleotide nucleotidyltransferase [Geobacter bemidjiensis
           Bem]
          Length = 696

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R IS    +   A GS L   G+T  +  ATL   V     ++ +G    
Sbjct: 312 RIDGRDTKTIRAISTEVSLLPRAHGSALFTRGETQSIVAATLGTSVDEQRIDSLYGDSRK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R A   R+ G       +  RAL+ V+         I I  D
Sbjct: 372 KFMLHYNFPPYSVGETSFRLAPGRREIGHGM----LAERALQQVLPKHDDFPYTIRIVSD 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A + G  +++ D                 +K  VA I+ G++        
Sbjct: 428 ITESNGSSSMATVCGGSLSMMDAGI-------------PIKAPVAGIAMGLIKEGDDFAI 474

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           + D+   ED   D+D     T  G +  +Q   +    +++   A L  AK  
Sbjct: 475 LSDILGDEDHLGDMDFKVAGTAEG-VTALQMDIKIGGVTREIMSAALAQAKAG 526



 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 88/236 (37%), Gaps = 32/236 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--ITAEYGMLPRST 70
           I++    ++K A G+ ++K GDT +L TA     V M       G+  +T  Y     + 
Sbjct: 14  ITIETGKIAKQASGAVMIKSGDTMVLVTA-----VAMKSAKEGQGFFPLTVNYQEKAYAG 68

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G    +  KRE   GR         R+I R +R +   + L   QI+        D    
Sbjct: 69  GRIPGSFFKRE---GRPSDNETLTCRLIDRPIRPLFPENFLNDTQIMATVVSADKDNDPG 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             ++ GA  AL                     G +A +  G + G  I +    ++   D
Sbjct: 126 ILSMIGASAAL-------------MVSDVPFAGPIAGVKVGRVDGQFIANPTAEQEEKSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           ++   +      I+ V+GSA     S+D     +      +  ++  Q + ++ +V
Sbjct: 173 LEI-VIAASQDAILMVEGSA--CEVSEDDLLEAIFFGHKAVQPVLAAQLE-LAKKV 224


>gi|167465515|ref|ZP_02330604.1| polynucleotide phosphorylase/polyadenylase [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 705

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 87/242 (35%), Gaps = 26/242 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR  +++R I     +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 313 VRPDGRALDEIRPIECDISLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLDLEET 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      A   R+ G       +  RA+  V+         I +  
Sbjct: 373 KRFMHHYNFPPFSVGEARPLRAPGRREIGHG----ALGARAIEQVIPSEEEFPYTIRLVS 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +VI+++G T  A+I  + +AL D                 +K  VA I+ G++       
Sbjct: 429 EVIESNGSTSQASICASMLALMDAGV-------------PIKAPVAGIAMGLIKDGQHFS 475

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +     +D     L  AK+    +++
Sbjct: 476 ILTDIQGMEDHLGDMDFKVAGTAKG-VTALQMDIKINGIDRDILHQALTQAKEGRMFILE 534

Query: 233 LQ 234
             
Sbjct: 535 KM 536



 Score = 95.2 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 88/233 (37%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +SL    ++K A  S LV++GDT +L T T     + +  +     +       G +P
Sbjct: 12  RPLSLETGRLAKQANASVLVRYGDTVVLCTVTASSEPKDLDFFPLTVNYEERLYAVGKIP 71

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  +     
Sbjct: 72  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFPEGFRNEVQVVAIVMSVDQECSPEI 125

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+TG   AL                +    G +  +  G + G  +++    + +  D+
Sbjct: 126 AAMTGVSAALS-------------ISNIPFNGPIGGVIVGRIDGEFVINPTTEQAAKSDI 172

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 T    I+ V+  A  A   ++     +    ++I  ++ +Q+  +  
Sbjct: 173 HLTVAGTKDA-IMMVEAGA--AEVPEEVMLEAIMFGHEQIKKIVAVQEQFVEE 222


>gi|114649397|ref|XP_522661.2| PREDICTED: exosome complex component RRP43 isoform 4 [Pan
           troglodytes]
          Length = 276

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 88/257 (34%), Gaps = 25/257 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P        G++  
Sbjct: 23  RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-TDAPDKGYVVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL---GSRQIII-D 115
              + P  +         SG  G  +Q   + I   +    ++    L     + + +  
Sbjct: 82  NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
           CD+  +  DG    A       AL +             + + + K +    ++ H  A 
Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVAT 196

Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           S  +      IVD    E+         VM + G +  +      +  +       ++ A
Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255

Query: 224 KDRIADLIKLQKDVISN 240
             R  ++ KL  +VI +
Sbjct: 256 VTRHKEVKKLMDEVIKS 272


>gi|206602200|gb|EDZ38682.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum sp. Group
           II '5-way CG']
          Length = 713

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 92/244 (37%), Gaps = 18/244 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  + +R I++   +     GS L   G+T  L+ ATL         +   G  T
Sbjct: 319 VRADGRGLSDIRPITIEVGILPRTHGSALFTRGETQSLSVATLGTSDDEQRIDALEGEST 378

Query: 61  ----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G          R+ G       +  RAL+ V+         I +  
Sbjct: 379 KRFMLHYNFPPFSVGETKPMRGPGRREIGHG----NLAERALKPVLPARDSFPYSIRLVS 434

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           D+++++G +  A + G  +A+ D    ++       +  + +G   AI         + D
Sbjct: 435 DILESNGSSSMATVCGGSLAMMDAGIPIKSAVAGIAMGLIKEGDRIAI---------LSD 485

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T++G I  VQ   +    + +     L  A++    +++  K 
Sbjct: 486 ILGLEDHLGDMDFKVTGTENG-ITAVQMDIKITGITVELMREALQKAREGRLYIMEKMKM 544

Query: 237 VISN 240
            + +
Sbjct: 545 ALPS 548



 Score = 96.7 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 81/228 (35%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           + L      K A+GS +V    T ++ TA      +  V        +       G +P 
Sbjct: 15  VRLETGRMAKQADGSVVVWADGTVVIATAVASKVSKPGVDFLPLTVDYQERAYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+   R     R+I R LR +         Q+I     I   G +   
Sbjct: 74  --GGFFKRE---GKPSEREILNSRLIDRPLRPLFPEGFFFDTQLIASVISIDRGGISDVM 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+  +  AL+                      VAA+  G + G  IV+    E     +D
Sbjct: 129 AVVASSAALY-------------VSDIPFLNPVAAVKVGCVDGTFIVNPTLDEQERSTLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T    I+ V+G  +    S++ F + ++LA   I  LI+ Q+ 
Sbjct: 176 LVVAGTRDA-IMMVEG--QGNEISEETFLSAIDLAHKSILPLIEAQEK 220


>gi|148240244|ref|YP_001225631.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. WH
           7803]
 gi|187611326|sp|A5GN19|PNP_SYNPW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|147848783|emb|CAK24334.1| Polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           7803]
          Length = 721

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 34/237 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           REI LT    +  A GS +++ GDT +L TA   +  E +        +       G +P
Sbjct: 13  REIRLTTGRYAPQAGGSVMIECGDTSVLVTATRSSGREGIDFLPLICDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----ADG 123
              G+ ++RE   GR   R+  I R+I R +R +         QI+  C  +     AD 
Sbjct: 73  ---GSFMRRE---GRPPERATLISRLIDRPMRPLFPSWLRDDLQIVATCMSLDERVPAD- 125

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
                ++TGA +A                      G +AA+  G+L    +++  Y E  
Sbjct: 126 ---VLSVTGASMATLLAGI-------------PFYGPMAAVRVGLLGDDFVLNPSYREIE 169

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             D+D     T  G IV V+  A +    +      ++   + + +LIK Q+ ++ +
Sbjct: 170 RGDLDLVVAGTPEG-IVMVEAGANQ--LPEQDVIEAIDFGYEAVCELIKAQESILKD 223



 Score = 97.5 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 93/248 (37%), Gaps = 31/248 (12%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R+ GR  +Q+R IS    V  K   GS L + G T +L+TATL    P   +       +
Sbjct: 323 RVDGRSLDQVRPISAAAGVLPKRVHGSGLFQRGLTQVLSTATL--GTPSDAQEMDDLNPS 380

Query: 61  AE------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
            E      Y   P S G      +   R+ G       +  RA+  V+         + +
Sbjct: 381 TEKTYLHHYNFPPYSVGETKPMRSPGRREIGHG----ALAERAILPVLPAKDTFPYVVRV 436

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V+ ++G T   ++ G+ +AL D                 LK  V+  + G++     
Sbjct: 437 VSEVLSSNGSTSMGSVCGSTLALMDAGV-------------PLKAPVSGAAMGLIKEGDE 483

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     TD G I  +Q   +    +       +N A+     +
Sbjct: 484 VRILTDIQGIEDFLGDMDFKVAGTDKG-ITALQMDMKITGLAMGTIAEAINQARPARLHI 542

Query: 231 IKLQKDVI 238
           ++   + I
Sbjct: 543 LEKMMEAI 550


>gi|88807542|ref|ZP_01123054.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           7805]
 gi|88788756|gb|EAR19911.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           7805]
          Length = 721

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 34/237 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           REI LT    +  A GS +++ GDT +L TA   +  E +        +       G +P
Sbjct: 13  REIRLTTGRYAPQAGGSVMIECGDTSVLVTATRSSGREGIDFLPLICDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----ADG 123
              G+ ++RE   GR   R+  I R+I R +R +         QI+  C  +     AD 
Sbjct: 73  ---GSFMRRE---GRPPERATLISRLIDRPMRPLFPSWLRDDLQIVATCMSLDERVPAD- 125

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
                ++TGA +A                      G +AA+  G+L    +++  Y E  
Sbjct: 126 ---VLSVTGASMATLLAGI-------------PFYGPMAAVRVGLLGDDFVLNPSYREIE 169

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             D+D     T  G IV V+  A +    +      ++   + + +LIK Q+ ++ +
Sbjct: 170 RGDLDLVVAGTPEG-IVMVEAGANQ--LPEQDVIEAIDFGYEAVCELIKAQESILKD 223



 Score = 99.4 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 93/248 (37%), Gaps = 31/248 (12%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R+ GR  +++R IS    V  K   GS L + G T +L+TATL    P   +        
Sbjct: 323 RVDGRTLDEVRPISAAAGVLPKRVHGSGLFQRGLTQVLSTATL--GTPSDAQEMDDLNPN 380

Query: 61  AE------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
            E      Y   P S G      +   R+ G       +  RA+  V+         + +
Sbjct: 381 TEKTYLHHYNFPPYSVGETKPMRSPGRREIGHG----ALAERAIIPVLPAKDTFPYVVRV 436

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V+ ++G T   ++ G+ +AL D                 LK  V+  + G++     
Sbjct: 437 VSEVLSSNGSTSMGSVCGSTLALMDAGV-------------PLKAPVSGAAMGLIKEGDE 483

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     TD G I  +Q   +    + +     +N A+     +
Sbjct: 484 VRILTDIQGIEDFLGDMDFKVAGTDKG-ITALQMDMKITGLAMNTIAEAINKARPARLHI 542

Query: 231 IKLQKDVI 238
           ++   + I
Sbjct: 543 LEKMMEAI 550


>gi|309358906|emb|CAP33602.2| hypothetical protein CBG_15142 [Caenorhabditis briggsae AF16]
          Length = 802

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 87/239 (36%), Gaps = 18/239 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--------EEKVPMWIR 52
           +R  GR+    R I +   + K   G  + + G T +++T T          + V   + 
Sbjct: 335 IRCDGRRPTDFRPIRIQVDMYKKLHGCSMFQRGQTQVMSTVTFDSPTAAFHPDSVAQLLG 394

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
           + +       Y     +T +     + S     R      +  +AL+ +          +
Sbjct: 395 SQRKKSFMLHYEFPSFATNDIGV--SASRSLNRREIGHGALAEKALKPLFPTGF--PYAV 450

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            + C V++++G +  A++ G  +AL+D    M++ +    +     G ++          
Sbjct: 451 RLACQVLESNGSSSMASVCGGSLALYDAGVPMKNAAAGVAI-----GLISDEKEPETNYK 505

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
            + D+   ED   D+D     T +G     Q   +    ++      L+ A+  I  ++
Sbjct: 506 VLTDILGIEDYAGDMDFKIAGTKNG-FTAAQLDVKNDGLTRQQLRESLDAARAGIDHVL 563



 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 32/228 (14%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-ITAEYGMLPRSTG---- 71
           T  ++++A  + +   GD  ++ T           +   +G  +  EY     + G    
Sbjct: 42  TGHMARFASAAVVASSGDNSVMATVV----QRKQKQGDGNGVPLQVEYRPSASAVGRIPT 97

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
           N ++RE     Q      I R I R++R ++  ++    Q+I     +  +       I 
Sbjct: 98  NFLRRELS---QSDNEILISRAIDRSIRPLMPANSY-ETQVICKPLALDENADQIMLGIN 153

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI--VDLDYGEDSTIDVDA 189
            A  ALH               S    G +AAI   M     I  V+    E     ++ 
Sbjct: 154 AASSALH-------------ISSAPFNGPLAAIRVSMDPRGKIFHVNPGQEELKASSMNM 200

Query: 190 NFVMTDSGHIVEVQGSAERATFSQ-DHFFAMLNLAKDRIADLIKLQKD 236
              M  +   V ++   E    ++ +     L++A   +  L     +
Sbjct: 201 IVAMRRNQKTVMIELDGEE---TRGEQLEEALDVAFQNVERLHVAMDE 245


>gi|229098276|ref|ZP_04229223.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-29]
 gi|229117294|ref|ZP_04246672.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-3]
 gi|228666194|gb|EEL21658.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-3]
 gi|228685174|gb|EEL39105.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-29]
          Length = 712

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILN 536

Query: 233 LQKDVISNE 241
               VI+  
Sbjct: 537 HMLSVIAEP 545



 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|220903340|ref|YP_002478652.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|257096688|sp|B8J1X9|PNP_DESDA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219867639|gb|ACL47974.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 743

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 27/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R I +   +   A GS L + G+T  L  ATL         ++  G +T 
Sbjct: 324 RIDGRDTTTVRPIQIQTGLLPRAHGSALFRRGETKSLVVATLGSSTDEQRMDSLTGDVTK 383

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G     E    R   R      +  ++LR V+   A     + +  +
Sbjct: 384 RFMLHYNFPPFSVG-----EVKPVRVSRREIGHGALAEKSLRPVLPADADFPFTLRVVAE 438

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
            ++++G +  AA+ G  ++L D                 +   VA ++ G++  G     
Sbjct: 439 TMESNGSSSMAAVCGGSLSLMDAGV-------------PVSAPVAGVAMGLIKEGEKFIV 485

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED+  D+D     T  G +  VQ   +    + +     +  A++    +++ 
Sbjct: 486 LTDILGDEDALGDMDFKIAGTAEG-VTGVQMDIKITGLTTEIMRTAMQQAREGRLHILEE 544

Query: 234 QKDVISNE 241
               I++ 
Sbjct: 545 MAKAIASP 552



 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 81/229 (35%), Gaps = 27/229 (11%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           EI +        A G   ++ G T +L T     LE     +    ++       G +P 
Sbjct: 19  EIIIESGRMANQAHGEVWIQCGGTVVLVTVCSQPLEFDKGFFPLTVEYSEKMYAAGRIP- 77

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR   R   + R+I R +R +         Q++        +  +   
Sbjct: 78  --GSFFRREI--GRPSERETLVARLIDRPIRPLFPKGLNEDVQVLASVISADQENESDVL 133

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+TGA  AL                    +G VA      + G  +++  +  +     D
Sbjct: 134 ALTGASAAL-------------MLSPLPFEGPVAGGRIARVGGQFVLNPTF--EQQAQSD 178

Query: 189 ANFVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            N V   SG  +  V+G A     S+D     L   + +I  L+++Q  
Sbjct: 179 LNIVFAASGDALTMVEGDAR--FISEDVIIEALEWGRLQILPLVEIQHK 225


>gi|158523039|ref|YP_001530909.1| polynucleotide phosphorylase/polyadenylase [Desulfococcus
           oleovorans Hxd3]
 gi|226702647|sp|A8ZZ59|PNP_DESOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|158511865|gb|ABW68832.1| Polyribonucleotide nucleotidyltransferase [Desulfococcus oleovorans
           Hxd3]
          Length = 721

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 86/242 (35%), Gaps = 18/242 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57
           R+ GR  +++R IS    V     GS L   G+T +L   TL               +  
Sbjct: 314 RIDGRAFDEVRPISCEVGVLPRTHGSALFTRGETQVLGVMTLGSGHDEQRVETLFGDETR 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G   +    S R  G       +  R +  V+         I +  +
Sbjct: 374 PFMLHYNFPPFCVGEVKRVMGPSRRDIGHG----NLAHRGISYVLPDKETFDYTIRLVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V++++G +    +    +AL D    ++   +   +  V  G   A+         + D+
Sbjct: 430 VLESNGSSSMGTVCSCILALMDGGVPIKAPVSGIAMGLVADGDKVAV---------LSDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   +  + S++     L+ AKD    ++    + 
Sbjct: 481 LGDEDHFGDMDFKVTGTEKG-ITALQMDIKIKSLSREILEKALHQAKDGRIHILGKMLEA 539

Query: 238 IS 239
           +S
Sbjct: 540 LS 541



 Score = 82.1 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 84/230 (36%), Gaps = 26/230 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
             ++    ++K A G+ LV++G+T +L T       +E       + ++       G +P
Sbjct: 14  PFTIKTGRLAKQAAGAALVQYGETIVLVTVAAATEPKEDADFLPLSVEYQEKIYSAGRIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              GN  +RE   GR   +     R+  R +R +         Q+I     +  +     
Sbjct: 74  ---GNYFRREI--GRPSEKETLTCRLTDRPIRPLFPAGYTFETQVITTVLSMDRENDPDV 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            +I GA  AL                     G +AA+  G L G  + +    E    D+
Sbjct: 129 LSIVGASAAL-------------TISDLPFDGPLAAVRVGRLNGTLVANPTNTELDDCDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +     + SG +V V+G +     S+      +    + +  LI +Q  +
Sbjct: 176 NIVVAGSRSG-VVMVEGGS--NVVSEAEMLEAIFFGHNALLPLIDIQDQM 222


>gi|329122064|ref|ZP_08250672.1| polyribonucleotide nucleotidyltransferase [Dialister micraerophilus
           DSM 19965]
 gi|327466871|gb|EGF12387.1| polyribonucleotide nucleotidyltransferase [Dialister micraerophilus
           DSM 19965]
          Length = 697

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 85/235 (36%), Gaps = 28/235 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-----K 55
           +R  GR  +++R I+    +     GS L   G T  LT  TL       I +      +
Sbjct: 311 IRPDGRALDEIRPITCEVGMIPRTHGSALFTRGQTQALTITTLAPMNETQIIDDLTLVNE 370

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I  +Y       G          R+ G       +  RAL  V+         I + 
Sbjct: 371 KRYIH-QYNFPSYCVGETKSSRGPGRREIGHG----ALAERALEPVIPSVDEFPYAIRVV 425

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            ++++++G +  A++ G+ ++L +                 +   VA I+ G++      
Sbjct: 426 SEILESNGSSSQASVCGSTMSLMNAGV-------------PIHAPVAGIAMGLVNEGEHF 472

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             + D+   ED+  D+D     T  G I  +Q   +    S++   A L  A   
Sbjct: 473 TILTDIQGMEDALGDMDFKVAGTAKG-ITAIQMDIKIHGLSREILMAALKQAHKG 526



 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 86/234 (36%), Gaps = 27/234 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +      K A GS LV++GDT +L   T      E    +     +       G +
Sbjct: 12  RPLIIETGKMAKQASGSVLVRYGDTVVLVATTWSKEPREGTDFFPLTVDYEEKMYSVGKM 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  ++RE   GR G  +    R+I R +R + D        ++     +  D    
Sbjct: 72  P---GGFLRRE---GRPGNSAVLNARLIDRPIRPLFDKRCRHDVHVVATVLSVDYDNAPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              + GA  ++                     G VA +  G + G  +V+    +     
Sbjct: 126 LCGLLGASASIA-------------ISDIPWDGPVAGVRVGKVDGEFVVNPTQEQLERST 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ++     +++  I+ V+G A+ A  S++     +  A   I  L++ QK +I  
Sbjct: 173 MNITVAGSETA-ILMVEGGAKEA--SEEEVLDAIMYAHTVIKQLVEFQKKIIEK 223


>gi|300121002|emb|CBK21384.2| unnamed protein product [Blastocystis hominis]
          Length = 204

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 67/214 (31%), Gaps = 25/214 (11%)

Query: 32  FGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
            G+T +L                 +     ++A   M P     R               
Sbjct: 1   MGNTKVLAVVYGPRDAGSKSSHDIDNDKATVSAGVTMAPYCGTERRVVHMN----SRICT 56

Query: 89  EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
           E  + I R    V+  +      I I C + QADGG     +  A +A+ D    + D  
Sbjct: 57  EYAQAIRRCFEHVILTTLYPHSTISIHCTIFQADGGELPCCLNAALLAIIDAGIDILDFQ 116

Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV-MTDSGHIVEVQGSAE 207
                         +++ G +    + D++Y E     +      +  S        +  
Sbjct: 117 -------------VSLNVGYMDNTILFDMNYVESHLNGILLTVAYLPKSDQFTL---TTL 160

Query: 208 RATFSQDHFFAMLNLAKDRIADLIKLQKD-VISN 240
            +    + F  +L+ AK+    +  + KD V+ N
Sbjct: 161 NSNIPLELFEDVLDAAKEGCKQVYAILKDHVLEN 194


>gi|260425775|ref|ZP_05779755.1| polyribonucleotide nucleotidyltransferase [Citreicella sp. SE45]
 gi|260423715|gb|EEX16965.1| polyribonucleotide nucleotidyltransferase [Citreicella sp. SE45]
          Length = 716

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 94/248 (37%), Gaps = 27/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R I     V     GS L   G+T  L   TL       I +  HG   +
Sbjct: 318 RIDGRALDQVRPIVSETSVLPRTHGSSLFTRGETQALVVTTLGTGDDEQIIDALHGNFRS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+         I +  +
Sbjct: 378 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGY-- 172
           + +++G +  A++ G  +++ D                 LK  VA ++ G++    G   
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLVLEDGGEYA 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T++G I  +Q   + A  + +     L  AK     ++ 
Sbjct: 481 VLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMKQALAQAKAGRLHILA 539

Query: 233 LQKDVISN 240
                ++ 
Sbjct: 540 EMAKALTE 547



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 79/231 (34%), Gaps = 33/231 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+GS +   G+T ++   T     +     +     +       G +P 
Sbjct: 16  LTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQEKYYAAGKVP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +          +++ C V+  D      
Sbjct: 75  --GGFFKREA---RPTEKETLTARLIDRPIRPLFVPGFKHE--VLVMCTVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE----D 182
             A+  A  AL                     G +A    G   G  +++    +     
Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIAGARVGFEDGEYVLNPTVDDMQGLR 174

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +  +   + V+  +   V +  S E    ++D     +  A ++I  +I L
Sbjct: 175 NNPEQRLDLVVAGTKDAVMMVES-EAYELTEDEMLGAVTFAHEQIQPVIDL 224


>gi|297623850|ref|YP_003705284.1| polyribonucleotide nucleotidyltransferase [Truepera radiovictrix
           DSM 17093]
 gi|297165030|gb|ADI14741.1| polyribonucleotide nucleotidyltransferase [Truepera radiovictrix
           DSM 17093]
          Length = 726

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 90/243 (37%), Gaps = 18/243 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTATLEEKVPMWIRNTK---H 56
           +R  GR    +R I +   V     GS +   G+T +L  T     K    I +      
Sbjct: 321 LRADGRAPEDIRPIWIEVGVLPKTHGSAVFTRGETQVLGVTTLGTGKDDRLIDDLGLETS 380

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +   VS R+ G       +  RAL  ++         + +  
Sbjct: 381 ETFMLHYNFPPFSTGEVKRLRGVSRRELGHG----NLARRALERMMPSQDTFGYVVRVVA 436

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + ++++G +  A++  A +++ D    ++       +  + +G    I         + D
Sbjct: 437 ETLESNGSSSMASVCAATLSMMDAGVPLKKPVAGIAMGLIKEGDTYKI---------LSD 487

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T  G +  +Q   +    + +   A L  A+     ++ L  +
Sbjct: 488 ILGSEDALGDMDFKVTGTHDG-VTALQMDIKIKGITPEIMRAALEQARVGRRHILNLMDE 546

Query: 237 VIS 239
           V+S
Sbjct: 547 VLS 549



 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 88/238 (36%), Gaps = 31/238 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           RE+ +     +K   GS  V++GDT +L TA + +       +T    +T EY     + 
Sbjct: 16  RELIIETGKYAKLVAGSVTVRYGDTVVLVTAHMSDTA----ADTDFLPLTVEYEERHYAI 71

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G    +  +RE   GR G ++    R+  R +R +         Q+II       +    
Sbjct: 72  GKIPGSFQRRE---GRPGTQATLNARITDRQIRPLFPKGLRNEVQVIITVLSADRENDPA 128

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A  GA  AL                +    G  A +S G + G  ++       +   
Sbjct: 129 MIAAIGASAALS-------------ISNIPWDGPTACVSVGYVDGQYVLYPSLQTLADSQ 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK---DRIADLIKLQKDVISNE 241
           ++     ++   ++ V+ SA+     +D     +  A+     + +LIK  +  I  E
Sbjct: 176 LELTVAASEDA-VLMVEASADE--LPEDTMVGAITFAQREMQGVIELIKRMRAEIGQE 230


>gi|193690697|ref|XP_001944927.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Acyrthosiphon pisum]
          Length = 762

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 86/247 (34%), Gaps = 16/247 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR+ + +R IS    + K   GS L + G T +  T  L+        + + +    
Sbjct: 349 RCDGRKLDDLRNISCEVDLYKPLHGSALFQRGQTQVFCTVALDSIDSALKLDPMTILTSG 408

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
                    Y   P +T +  +      R+ G       +  R LRS+V  +      I 
Sbjct: 409 INEKNFFLHYEFPPYATNDIGRMGPSMRREIGHG----ALAERGLRSIVPENF--PFTIR 462

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+I G  +AL D    +   +    +  +        S  +     
Sbjct: 463 LTSEVLESNGSSSMASICGGSLALMDAGVPISQPAAGVAIGLITNYDDND-SKHIKDYRI 521

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +            +  A      +I +
Sbjct: 522 LTDILGIEDYLGDMDFKLAGTKKG-ITALQADIKIPGLPLKIVMEAVEAATSAKHKIINI 580

Query: 234 QKDVISN 240
               I +
Sbjct: 581 MNATIQS 587



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 79/232 (34%), Gaps = 31/232 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           I L+    ++ ++G  +   GDT ++              ++    +T +Y     + G 
Sbjct: 45  IKLSGGKYARLSDGCAVATLGDTSVMA----TTVSKSTKSSSNFLPLTVDYRQKAAAAG- 99

Query: 73  RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTA 128
           R+    +         EI   R+I R+LR +   +     QI+  C+++  DG       
Sbjct: 100 RIPTNYLRRELSVSEHEILTSRLIDRSLRPLFPSTYCFDTQIM--CNLLAVDGINHPDIL 157

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           +I  A  AL                     G V A+  G+     + +    E S  +++
Sbjct: 158 SINAASTALA-------------LSDIPWNGPVGAVRVGLCDNNLVTNPTRRELSNSELN 204

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI----KLQKD 236
              V      ++ ++GSA      Q      +         ++     LQK+
Sbjct: 205 LVVVSAAKNLVIMLEGSANNVL--QQDVLKAIKFGVKECQHIVNCIDNLQKE 254


>gi|254456606|ref|ZP_05070035.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
           sp. HTCC7211]
 gi|207083608|gb|EDZ61034.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
           sp. HTCC7211]
          Length = 690

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 88/246 (35%), Gaps = 27/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  + +R I     V     GS L   G+T  +  ATL    +E+    +   +  
Sbjct: 313 RIDGRGLSDVRPIECEVGVLPRTHGSALFTRGETQAIVVATLGTSDDEQRIESLDGLQRE 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R     R+ G      ++  RA+ S +           I  +
Sbjct: 373 RFMLHYNFPPFSVGE-TGRIGTGRREIGHG----KLAWRAINSSLPSKEAFPYTFRIVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A + G  +AL D                 +K  VA I+ G++        
Sbjct: 428 ITESNGSSSMATVCGTSLALMDAGV-------------PIKEPVAGIAMGLIKEGDDFSV 474

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    + +     L+ AKD    ++  
Sbjct: 475 LSDILGDEDHLGDMDFKVAGTKDG-ITSLQMDIKITGITFEIMEQALSQAKDGRVHILGE 533

Query: 234 QKDVIS 239
               +S
Sbjct: 534 MNKALS 539



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 83/234 (35%), Gaps = 28/234 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
           +ISL    V++ A+G+ +   G+T +L T    +KV      +  +  +       G +P
Sbjct: 15  KISLETGKVARQADGAIIASCGETVILATVVGAKKVNPDMDYFPLSVNYQEKYYAGGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KREA   R       I R+I R +R +   +     Q++        +     
Sbjct: 75  ---GGYFKREA---RPTESETLISRLIDRPIRPLFPDAFKNEVQLLPTVISYDKENQPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AIT +  AL                     G V A   G + G  I++    E     +
Sbjct: 129 LAITASSAALA-------------ISGMPFMGPVGASRVGFVDGKYILNPSKAELENSSL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D     T    ++     +E    +++     +    +    +I++ ++ ++ E
Sbjct: 176 DLVVAGTKDAVLMV---ESEANGLTEEEMLNAVKFGHEGFVPVIEMVEE-LAKE 225


>gi|239636247|ref|ZP_04677249.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri
           L37603]
 gi|239597602|gb|EEQ80097.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri
           L37603]
          Length = 598

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 90/234 (38%), Gaps = 26/234 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +   A GS L   G T  L+     A  + ++   +   + 
Sbjct: 217 IRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 276

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RAL+ ++  ++     + I  
Sbjct: 277 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALKYIIPDTSDFPYTVRIVS 332

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G +  A+I G+ +AL D                 +K  VA I+ G++       
Sbjct: 333 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 379

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED+  D+D     T  G I  +Q   +    +++     L  A+  
Sbjct: 380 ILTDIQGMEDALGDMDFKVAGTKDG-ITAIQMDIKIDGLTREVIEEALEQARQG 432



 Score = 38.1 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%)

Query: 101 VVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160
           +         QI+        D     AA+ G+ +AL                     G 
Sbjct: 1   MFPKGYKHDVQIMNIVLSADPDCSPEMAAMIGSSMALS-------------VSDIPFLGP 47

Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAM 219
           +A ++ G + G  +++    E     +D       D+ ++VE    A  +  ++      
Sbjct: 48  IAGVNVGYVDGKYVINPTVAEKEVSRLDLEVAGHKDAVNMVE----AGASEITESEMLEA 103

Query: 220 LNLAKDRIADLIKLQK 235
           +    D I  L+  Q+
Sbjct: 104 IFFGHDEIKRLVAFQQ 119


>gi|260432181|ref|ZP_05786152.1| polyribonucleotide nucleotidyltransferase [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416009|gb|EEX09268.1| polyribonucleotide nucleotidyltransferase [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 716

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 27/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I     +     GS L   G+T  L   TL         +  HG   +
Sbjct: 318 RIDGRSTTDVRPIVAETGLLPRTHGSALFTRGETQALAVTTLGTGDDEQFIDALHGNFKS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+         I +  +
Sbjct: 378 NFLLHYNFPPYSVGEVGR----VGPPGRREVGHGKLAWRALQAVLPAPTDFPYTIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           + +++G +  A++ G  +++ D                 LK  VA ++ G++        
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEEDGDYA 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T++G I  +Q   + A  + +     L  AKD    ++ 
Sbjct: 481 VLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKALAQAKDGRLHILN 539

Query: 233 LQKDVISN 240
                +S 
Sbjct: 540 EMSKALSE 547



 Score = 75.1 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 80/234 (34%), Gaps = 39/234 (16%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+GS +   G+T ++   T     +     +     +       G +P 
Sbjct: 16  LTLETGKVARQADGSVIATLGETSVMANVTFAKEQKPGQDFFPLTVHYQEKYYAAGKVP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++ C V+  D      
Sbjct: 75  --GGFFKREA---RPTEKETLTARLIDRPIRPLFVDGF--KNEVLVMCTVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                    +G +A    G   G  +++     D   D
Sbjct: 128 IVAMIAASAALTISGA-------------PFRGPIAGCRVGYTNGEYVLNPTV--DDMQD 172

Query: 187 VDAN-------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +  N        V      ++ V+  +E    S+      +N A  +I  +I L
Sbjct: 173 LRLNPEQRLDLVVAGTKDAVMMVE--SEAYELSEAEMLGAVNFAHQQIQPVIDL 224


>gi|219684925|ref|ZP_03539866.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia garinii PBr]
 gi|219671663|gb|EED28719.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia garinii PBr]
          Length = 721

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 91/248 (36%), Gaps = 27/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR  N++R+I     +     GS L   G+T  L       +++E++   I   K 
Sbjct: 315 IRTDGRTPNEIRDIIAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G    R     R+ G       +  RAL S+V         I +  
Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++++++G +  A +    ++L                   +K  VA I+ G++       
Sbjct: 430 EILESNGSSSMATVCAGSMSLMSAGV-------------PVKRQVAGIAMGLISEGDKYV 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I   Q   +    ++      L  A+     ++ 
Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKHLMRDALEQARIGRMHILS 535

Query: 233 LQKDVISN 240
           +   VIS+
Sbjct: 536 VMDTVISD 543



 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 85/240 (35%), Gaps = 32/240 (13%)

Query: 5   GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59
           GR  +++           K A GS L  +G + +L T      + E +     + ++   
Sbjct: 10  GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEK 64

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
               G +P   G  +KRE   G+   +   + R+I R +R + D       Q+I      
Sbjct: 65  YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
                     +  A+ A+             F       G +AA+    L G  IV+  +
Sbjct: 119 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGEFIVNPSF 165

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            E    D+D   V      I  V+G A     S+D   + ++ A + I  +   QK  + 
Sbjct: 166 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VSEDILLSAIDGAHEYIKQICNAQKKFLE 222


>gi|111115640|ref|YP_710258.1| polynucleotide phosphorylase/polyadenylase [Borrelia afzelii PKo]
 gi|123145624|sp|Q0SM46|PNP_BORAP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110890914|gb|ABH02082.1| polyribonucleotide nucleotidyltransferase [Borrelia afzelii PKo]
          Length = 722

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 27/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR  N++R+I     +     GS L   G+T  L       +++E++   I   K 
Sbjct: 315 IRTDGRTPNEIRDILAEVDILSRTHGSSLFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G    R     R+ G       +  RAL S++         I +  
Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMIPGKNDFPYTIRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++++++G +  A +    ++L                   +K  VA I+ G++       
Sbjct: 430 EILESNGSSSMATVCAGSMSLMSAGV-------------PVKRQVAGIAMGLISEGDKYV 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T++G I   Q   +    ++      L  A+     ++ 
Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTENG-ITGFQMDIKIENVTKQLMRDALEQARVGRIHILS 535

Query: 233 LQKDVISN 240
           +   VISN
Sbjct: 536 IMNSVISN 543



 Score = 91.7 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 86/239 (35%), Gaps = 32/239 (13%)

Query: 5   GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59
           GR  +++           K A GS L  +G + +L T      + E +     + ++   
Sbjct: 10  GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEK 64

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
               G +P   G  +KRE   G+   +   + R+I R +R + D       Q+I      
Sbjct: 65  YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
                     +  A+ A+             F       G +AA+    L G  IV+  +
Sbjct: 119 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGKFIVNPSF 165

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E    D+D   V      I  V+G A     S+D   + ++ A + I  +   QK+ +
Sbjct: 166 EEIHDSDLDI-VVAGSLNGITMVEGGANE--VSEDILLSAIDSAHEYIKQICNAQKEFL 221


>gi|253701574|ref|YP_003022763.1| polynucleotide phosphorylase/polyadenylase [Geobacter sp. M21]
 gi|259534126|sp|C6E2P5|PNP_GEOSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|251776424|gb|ACT19005.1| Polyribonucleotide nucleotidyltransferase [Geobacter sp. M21]
          Length = 696

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R IS    +   A GS L   G+T  +  ATL   V     ++ +G    
Sbjct: 312 RIDGRDTKTIRAISTEVSLLPRAHGSALFTRGETQSIVAATLGTSVDEQRIDSLYGDSRK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R A   R+ G       +  RAL+ V+         I I  D
Sbjct: 372 KFMLHYNFPPYSVGETSFRLAPGRREIGHGM----LAERALQQVLPKHDDFPYTIRIVSD 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A + G  +++ D                 +K  VA I+ G++        
Sbjct: 428 ITESNGSSSMATVCGGSLSMMDAGI-------------PIKAPVAGIAMGLIKEGDDFAI 474

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           + D+   ED   D+D     T  G +  +Q   +    +++   A L  AK  
Sbjct: 475 LSDILGDEDHLGDMDFKVAGTAEG-VTALQMDIKIGGVTREIMSAALAQAKAG 526



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 87/236 (36%), Gaps = 32/236 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--ITAEYGMLPRST 70
           I++    ++K A G+ ++K GDT +L TA     V M       G+  +T  Y     + 
Sbjct: 14  ITIETGKIAKQASGAVMIKSGDTMVLVTA-----VAMKSAKEGQGFFPLTVNYQEKAYAG 68

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G    +  KRE   GR         R+I R +R +     L   Q++        D    
Sbjct: 69  GRIPGSFFKRE---GRPSDNETLTCRLIDRPIRPLFPEGFLNDTQVMATVVSADKDNDPA 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             ++ GA  AL                     G +A +  G + G  I +    E    D
Sbjct: 126 ILSMIGASAAL-------------MVSDCPFAGPIAGVKVGRVNGAFIANPTAEELEKSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           ++     +    I+ V+GSA  A  S++     +      +  ++  Q + ++ +V
Sbjct: 173 LEIVIAASQEA-ILMVEGSA--AEVSENDLLEAIFFGHAAVQPILAAQLE-LAKKV 224


>gi|254671820|emb|CBA03945.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           alpha275]
          Length = 579

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|224047480|ref|XP_002196971.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1 [Taeniopygia
           guttata]
          Length = 936

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 91/249 (36%), Gaps = 19/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWI-----RN 53
           R  GR    +R+I     + +   GS L + G T +L T    +LE  V   +       
Sbjct: 511 RCDGRDLTSLRDIKCEVNMFRMLHGSALFQRGQTQVLCTVTFDSLESSVKSDLISTAVSG 570

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   ++ R+ G       +  RAL+ V+         I 
Sbjct: 571 IKDKNFMLHYEFPPYATNEIGKVTGMNRRELGHG----ALAERALKPVIPQDF--PFTIR 624

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    + +      +  V K    +   G +  Y 
Sbjct: 625 VTSEVLESNGSSSMASACGGSLALMDAGVPVSNAVAGVAIGLVTK---CSQGKGDIEDYR 681

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T+ G I  +Q   +            +  A     +++ 
Sbjct: 682 LLTDILGIEDYYGDMDFKMAGTNKG-ITALQVDLKLPGIPIKIVVEAIQQATAAKREILH 740

Query: 233 LQKDVISNE 241
           +    ++  
Sbjct: 741 IMNQTLAKP 749



 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 82/205 (40%), Gaps = 31/205 (15%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTT-ATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
           R++ L+     K+A+GS +V+ GDT ++ T  +  +  P          +  +Y     +
Sbjct: 207 RKMELSSGKLAKFADGSAVVQLGDTAVMVTAVSKTKPSPSQFMP-----LVVDYRQKAAA 261

Query: 70  TGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
            G R+    +    G   +EI   R+I R++R +         QI+  C+++  DG    
Sbjct: 262 AG-RIPTNYLRRELGSTDKEILTSRVIDRSIRPLFPAGYFYDTQIL--CNLLAVDGVNDP 318

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI GA  AL                     G + A+  G++ G  +++    E    
Sbjct: 319 DILAINGASAALA-------------LSDIPWNGPIGAVRVGLVDGETVINPTRKE--MS 363

Query: 186 DVDANFVMTDSGH--IVEVQGSAER 208
               N V+  + H  +V ++ +AE 
Sbjct: 364 SSALNLVVAGALHSQVVMLEATAEN 388


>gi|26991392|ref|NP_746817.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida
           KT2440]
 gi|81439660|sp|Q88DW0|PNP_PSEPK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|24986460|gb|AAN70281.1|AE016668_7 polyribonucleotide nucleotidyltransferase [Pseudomonas putida
           KT2440]
          Length = 701

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 95/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDNKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R++++++  + +    I +  +
Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPAADVFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    M+       +  V +G   A+         + D+
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  A +   +++     V
Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQV 541

Query: 238 ISN 240
           I  
Sbjct: 542 IGQ 544



 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 77/231 (33%), Gaps = 31/231 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGD--THLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66
           ++L    +++ A G+ LV   +  T +L T    ++       +  +  +   T   G +
Sbjct: 15  VTLETGRIARQATGAVLVTVDNDVT-VLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +     R+I R +R +     +   Q++             
Sbjct: 74  P---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185
            AA+ G   AL                    +G + A           +++  Y + +  
Sbjct: 128 IAAMIGTSAALAISGI-------------PFEGPIGAARVAFHESTGYLLNPTYEQLAAS 174

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            +D     T    ++     +E    ++D     +  A D    +I+  K+
Sbjct: 175 SLDMVVAGTSDAVLMV---ESEAQELTEDQMLGAVLFAHDEFQAVIQAVKE 222


>gi|114566439|ref|YP_753593.1| polynucleotide phosphorylase/polyadenylase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|122318489|sp|Q0AYI2|PNP_SYNWW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|114337374|gb|ABI68222.1| Polyribonucleotide nucleotidyltransferase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 703

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 99/249 (39%), Gaps = 28/249 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-----TATLEEKVPMWIRNTKH 56
           R+ GR+ +++R++S          GS L   G T +L+       + E+++       K 
Sbjct: 313 RVDGRKLDEIRKVSCEVGFLPRPHGSGLFTRGQTQVLSVTTLGAISEEQRLDGLGIEEKK 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            +I   Y   P STG          R+ G       +  RAL +V+         I +  
Sbjct: 373 RYIH-HYNFPPYSTGETKPMRGPGRREIGHG----ALAERALLAVIPSEEEFPYTIRVVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY--- 172
           +V++++G +   ++ G+ ++L                   +K  V+ I+ G++  G    
Sbjct: 428 EVLESNGSSSMGSVCGSTLSLMHAGV-------------PIKAPVSGIAMGLVKEGERFA 474

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T+ G +  +Q   +    +++   A L  A++    ++K
Sbjct: 475 IMSDIQGIEDALGDMDFKLAGTEKG-VTALQMDIKITGVNREIVEAALKQAREGRMFILK 533

Query: 233 LQKDVISNE 241
              + I   
Sbjct: 534 KMLEAIDKP 542



 Score = 95.2 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 92/234 (39%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    V++ A G+ L+++GDT +L TAT      E +  +     +       G +
Sbjct: 13  RPLIVEIGQVAQQANGAALMRYGDTVVLVTATAAKQPREGIDFFPLTVDYEEKQYAVGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   ++    R+I R +R +          ++     ++ D    
Sbjct: 73  P---GGFIKRE---GRATAQATLSARLIDRPIRPLFPKGFRNEIHVVATILSVEKDNAPD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AITGA VAL                     G VAA+  G++ G  I++    +    D
Sbjct: 127 VTAITGASVALS-------------ISDIPFAGPVAAVIVGLVDGELIINPTVEQHQKSD 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    I+ V+G A      ++     +  A + I  ++  Q+++I  
Sbjct: 174 LHLAVAGTKEA-IMMVEGGANEVP--EETMRDAIFFAHEEIKKIVDFQENIIRE 224


>gi|70726640|ref|YP_253554.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           haemolyticus JCSC1435]
 gi|117940134|sp|Q4L5X7|PNP_STAHJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|68447364|dbj|BAE04948.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           haemolyticus JCSC1435]
          Length = 700

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 89/234 (38%), Gaps = 26/234 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +   A GS L   G T  L+     A  + ++   +   + 
Sbjct: 318 IRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEQE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RAL+ ++  +      + I  
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALKYIIPDTTEFPYTVRIVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G +  A+I G+ +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED+  D+D     T  G I  +Q   +    +++     L  A+  
Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREVIEEALEQARQG 533



 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 90/233 (38%), Gaps = 28/233 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ LV++GDT +L+TA           +     +       G +P
Sbjct: 15  RSLTIEIGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDGDFFPLTVNYEEKMYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR G  +    R+I R +R +         QI+        D     
Sbjct: 75  ---GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNTVLSADPDCSPEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  +++    E     +
Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYVDGKYVINPTVEEKEVSRL 175

Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D       D+ ++VE    A  +  ++      +    D I  L+  Q++V++
Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITEKEMLEAIFFGHDEIKRLVAFQEEVVA 224


>gi|152988444|ref|YP_001350781.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
           PA7]
 gi|187611271|sp|A6VCJ6|PNP_PSEA7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|150963602|gb|ABR85627.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
           PA7]
          Length = 701

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 93/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R + +   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLRIEVGVLGKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGERKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R    GR   R     R+  R + +++         I +  +
Sbjct: 376 AFMLHYNFPPFSVGE-CGRMGSPGR---REIGHGRLARRGVAAMLPTQDEFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++  G     
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGV-------------PVKAPVAGIAMGLVKEGEKFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     TD G +  +Q   +    +++     L  A +   +++  
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTDKG-VTALQMDIKINGITEEIMEIALGQALEARLNILGQ 537

Query: 234 QKDVISNE 241
              VI+  
Sbjct: 538 MNQVIARP 545



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 28/229 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ LV   D  +L T     +  E    +  +  +   T   G +P 
Sbjct: 15  VTLETGRIARQATGAVLVTMDDVSVLVTVVGAKSPAEGRDFFPLSVHYQEKTYAAGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +     R+I R +R +     +   Q++              A
Sbjct: 74  --GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTNKKSDPDIA 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYGEDSTIDV 187
           A+ G   AL                     G + A   G       I++  Y +  +  +
Sbjct: 129 AMIGTSAALAISGI-------------PFAGPIGAARVGFHPEIGYILNPTYEQLQSSSL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D     T+   ++     +E    ++D     +  A D    +I+  K+
Sbjct: 176 DMVVAGTEDAVLMV---ESEADELTEDQMLGAVLFAHDEFQAVIRAVKE 221


>gi|229168546|ref|ZP_04296269.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621]
 gi|228614952|gb|EEK72054.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621]
          Length = 717

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVLPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSREILEEALQQAKIGRVHILN 536

Query: 233 LQKDVISNE 241
               VI+  
Sbjct: 537 HMLSVIAEP 545



 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|8928246|sp|O87792|PNP_PSEPU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|3650364|emb|CAA77048.1| polyribonucleotide nucleotidyltransferase [Pseudomonas putida]
          Length = 701

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 95/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDNKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R++++++  + +    I +  +
Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPAADVFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    M+       +  V +G   A+         + D+
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  A +   +++     V
Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQV 541

Query: 238 ISN 240
           I  
Sbjct: 542 IGQ 544



 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 77/231 (33%), Gaps = 31/231 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGD--THLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66
           ++L    +++ A G+ LV   +  T +L T    ++       +  +  +   T   G +
Sbjct: 15  VTLETGRIARQATGAVLVTVDNDVT-VLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +     R+I R +R +     +   Q++             
Sbjct: 74  P---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185
            AA+ G   AL                    +G + A           +++  Y + +  
Sbjct: 128 IAAMIGTSAALAISGI-------------PFEGPIGAARVAFHESTGYLLNPTYEQLAAS 174

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            +D     T    ++     +E    ++D     +  A D    +I+  K+
Sbjct: 175 SLDMVVAGTSDAVLMV---ESEAQELTEDQMLGAVLFAHDEFQAVIQAVKE 222


>gi|225865786|ref|YP_002751164.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB102]
 gi|254782705|sp|C1EP29|PNP_BACC3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225790852|gb|ACO31069.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB102]
          Length = 712

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILN 536

Query: 233 LQKDVISNE 241
               VI+  
Sbjct: 537 HMLSVIAEP 545



 Score = 92.1 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGTTVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|254295410|ref|YP_003061433.1| polynucleotide phosphorylase/polyadenylase [Hirschia baltica ATCC
           49814]
 gi|254043941|gb|ACT60736.1| Polyribonucleotide nucleotidyltransferase [Hirschia baltica ATCC
           49814]
          Length = 709

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 91/246 (36%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           +R+ GR  +Q+R I     +     GS L   G+T  +  ATL           +  T  
Sbjct: 316 VRIDGRALDQVRPILGEVSILPRTHGSALFTRGETQAICVATLGTGEDEQFIDGLEGTSK 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +      R+ G      ++  RAL++V+  +      + +  
Sbjct: 376 SNFMLHYNFPPYSVGEVGRMGGAGRREIGHG----KLAWRALKAVLPSNEDFPYTLRLVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++ +++G +  A + G+ +A+ D                 +   V+ I+ G++       
Sbjct: 432 EITESNGSSSMATVCGSSLAMMDAGV-------------PITRPVSGIAMGLIKDEDGIA 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   + A  +++     L  AK   A ++ 
Sbjct: 479 VLSDILGDEDHLGDMDFKVAGTTEG-LTSLQMDIKIAGITKEIMQTALEQAKGGRAHILD 537

Query: 233 LQKDVI 238
                +
Sbjct: 538 EMNKAL 543



 Score = 66.3 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 73/226 (32%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R ++L    +++ A+G+ L  +G+T +L T          +  +     +       G +
Sbjct: 14  RPLTLETGRIARQADGAVLATYGETSVLATVVAAKKANPDLDFFPLTVNYQEKYYAAGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KREA   R   +     R+I R +R +         Q+++       +    
Sbjct: 74  P---GGFFKREA---RPTEKETLTSRLIDRPIRPLFVPGFKNETQVVLTVLSYDMENDP- 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                       D +  +   +          G + A   G   G  I++     D   D
Sbjct: 127 ------------DVVAMVAASAALTVSGVPFMGPIGAARVGYKDGEYIINPTL--DQMAD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
              + V+  +   V +  S E    S++     +    +    +I 
Sbjct: 173 TQLDLVVAGTQDAVMMVES-EAKELSEEVMLGAVMAGHESFQTVID 217


>gi|121602640|ref|YP_989507.1| polynucleotide phosphorylase/polyadenylase [Bartonella
           bacilliformis KC583]
 gi|187470938|sp|A1UU54|PNP_BARBK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|120614817|gb|ABM45418.1| polyribonucleotide nucleotidyltransferase [Bartonella bacilliformis
           KC583]
          Length = 733

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 88/247 (35%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR  + +R I     +     GS L   G+T  L  ATL         +   G    
Sbjct: 317 RIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQALVVATLGTSEDEQYVDLLTGVCKE 376

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R +  GR   R     ++  RA+  ++         I +  +
Sbjct: 377 TFLLHYNFPPFSVGE-TGRLSSPGR---REIGHGKLAWRAIHPMLPTKEAFPYTIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A + G  +AL D    +                VA I+ G++        
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAR-------------PVAGIAMGLIKEGERFVI 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    ++D     L  AKD    ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTKNG-ITSLQMDIKIDGITEDIMKIALEQAKDGRNHILNE 538

Query: 234 QKDVISN 240
               +++
Sbjct: 539 MAKALTD 545



 Score = 92.1 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 79/229 (34%), Gaps = 31/229 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V++ A+G+ +  +G+T +L T       +     +     +   T   G +
Sbjct: 14  RPLTIETGRVARQADGAVVATYGETVVLATVVSAKAPKPDQDFFPLTVNYQEKTYAVGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE+   R       I R+I R +R +         Q+I+   VIQ D    
Sbjct: 74  P---GGYFKRES---RPSENETLISRLIDRPIRPLFVDDYKNDTQVIVS--VIQHDLENN 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++  A  AL                     G +A    G   G+ +++    E   
Sbjct: 126 PDILSMIAASAALTLSGI-------------PFMGPIAGARVGYCNGHYVLNPTLDEMPE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
             +D     T++  ++     +E    S++     +   +     +I  
Sbjct: 173 SKLDLVVAGTENAVLMV---ESEAHELSEEVMLGAITFGQKGFQPVIDA 218


>gi|30263811|ref|NP_846188.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           Ames]
 gi|47529234|ref|YP_020583.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49186657|ref|YP_029909.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           Sterne]
 gi|65321134|ref|ZP_00394093.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Bacillus anthracis str. A2012]
 gi|170706809|ref|ZP_02897267.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0389]
 gi|229603609|ref|YP_002868046.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0248]
 gi|254759341|ref|ZP_05211366.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           Australia 94]
 gi|81583685|sp|Q81WM8|PNP_BACAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782703|sp|C3P5L0|PNP_BACAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|30258455|gb|AAP27674.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           Ames]
 gi|47504382|gb|AAT33058.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49180584|gb|AAT55960.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           Sterne]
 gi|170128227|gb|EDS97096.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0389]
 gi|229268017|gb|ACQ49654.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0248]
          Length = 712

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILN 536

Query: 233 LQKDVISNE 241
               VI+  
Sbjct: 537 HMLSVIAEP 545



 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVNIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|228947527|ref|ZP_04109817.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228812047|gb|EEM58378.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 712

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILN 536

Query: 233 LQKDVISNE 241
               VI+  
Sbjct: 537 HMLSVIAEP 545



 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|326533940|dbj|BAJ93743.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 897

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 90/240 (37%), Gaps = 33/240 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56
           R  GR   ++R I+    +   A GS L   G+T  L   TL +     ++   +   + 
Sbjct: 447 RSDGRSACELRPINSQCGILPRAHGSALFTRGETQALAVVTLGDYQMAQRIDTLVDTEES 506

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +  A + R+ G       +  RAL  ++         I ++ 
Sbjct: 507 KSFYLQYTFPPSSVGEVGRTGAPNRREIGHGM----LAERALEPILPPEVDFPYTIRVES 562

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------- 169
            + +++G +  A++ G  +AL D                 +K  VA I+ G++       
Sbjct: 563 TITESNGSSSMASVCGGCLALQDAGV-------------PIKFPVAGIAMGLVLDTHEFG 609

Query: 170 -CGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             G P++  D+   ED++ D+D      + G I   Q   +    +       L  A+D 
Sbjct: 610 GDGTPLILSDITGSEDASGDMDFKVAGNEHG-ISAFQMDIKVVGITLPVMEQALLQARDG 668



 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 80/229 (34%), Gaps = 31/229 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R I +      + A GS +V  G+T +  +     T  +    +  +  +          
Sbjct: 98  RHILVETGHIGRQASGSVMVTDGETIVYCSVCMADTPSDPSDFFPMSVHYQE---RLSAA 154

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--G 124
            R++G   KRE   GR       + R+I R LR  +        QI+    V   DG   
Sbjct: 155 GRTSGGFFKRE---GRAKDHEVLVCRLIDRPLRPTMPKGFYYETQIL--SWVFSYDGLHS 209

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+T A +A+                    K  +A +  GM+    +V+    +   
Sbjct: 210 PDCVAVTAAGIAMA-------------LSEVPNKQTIAGVRIGMINDQFVVNPTTEQMED 256

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
            ++D     TDS  I+ ++G       +++     +   +  I ++ K 
Sbjct: 257 SELDLMMAGTDSA-ILMIEG--FCNFLTEEKLLQAVETGQAAIREICKA 302


>gi|260063685|ref|YP_003196765.1| polynucleotide phosphorylase/polyadenylase [Robiginitalea biformata
           HTCC2501]
 gi|88783130|gb|EAR14303.1| putative polyribonucleotide nucleotidyltransferase [Robiginitalea
           biformata HTCC2501]
          Length = 750

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 79/231 (34%), Gaps = 20/231 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +RL GR+ +++R I           GS +   G+T  L T TL    E  +         
Sbjct: 317 IRLDGRKTDEIRPIWCEVDYLPSTHGSAIFTRGETQALATVTLGTSREANIIDMPSFEGE 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG        S R+ G       +  RAL   V         + +  
Sbjct: 377 ERFYLHYNFPPFSTGEARPIRGTSRREIGHG----NLAQRALSRQVPED--CPYTVRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175
           +V++++G +  A +    +AL D    +    +   +          IS      Y ++ 
Sbjct: 431 EVLESNGSSSMATVCAGTMALMDAGVKLRKPVSGIAMG--------LISDPESGKYAVLS 482

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           D+   ED   D+D     T  G I   Q   +    S +     L  A+D 
Sbjct: 483 DILGDEDHLGDMDFKVTGTADG-ITACQMDIKIKGLSYEILIKALKQARDG 532



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 81/231 (35%), Gaps = 21/231 (9%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           REIS+      K A GS +V+ G+  LL T     K               ++    R  
Sbjct: 16  REISIETGKLAKQAHGSVVVRSGNCMLLCTVVSNYKASDLDFLPLTVDYREKFHASGRYP 75

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KREA   R       + R++ R LR +   +     Q++I       D        
Sbjct: 76  GGFFKREA---RPSTGEILVMRLVDRVLRPLFPKNYHCETQVMIQLMSHDDD-------- 124

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
                 + D +  +   +         +  ++ +  G + G  I++    +  + D+D  
Sbjct: 125 -----VMPDAMAGLAASAAIQLSDFPFECPISEVRVGRVDGEFIINPTRTQLESSDIDM- 178

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
            V      ++ V+G  E    S++     +  A + +   I  Q   ++++
Sbjct: 179 IVGASEDSVMMVEG--EMDEISEEDMTEAIKFAHEAVKVQIAAQNR-LADK 226


>gi|58698478|ref|ZP_00373385.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Drosophila ananassae]
 gi|58535017|gb|EAL59109.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Drosophila ananassae]
          Length = 677

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 97/249 (38%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTA---TLEEKVPMWIRNTKH 56
           +R+ GR+ +++R+I +   +     GS L   G+T  L  TA   T +E++   I   + 
Sbjct: 310 VRIDGRKHDEIRQIEVEVDILSKTHGSALFTRGNTQALVVTALGTTQDEQIVDDIEGDRR 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     + G      + +   G R     ++  +A+  V+   +     I +  
Sbjct: 370 EHFMLHYNFPSFAVGE----TSAARAPGRREIGHGKLAWKAIHPVLPDKSEFPYTIRVVS 425

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +++++DG +  A + G  +AL D                 +K  VA I+ G++       
Sbjct: 426 EILESDGSSSMATVCGTSLALMDTGV-------------PIKAPVAGIAMGLIKDKDEYV 472

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   + +  S +     L  AK     +++
Sbjct: 473 ILSDILGDEDYLGDMDFKVAGTSEG-VTALQMDMKISGISFEIVEKSLEQAKAGRLHILE 531

Query: 233 LQKDVISNE 241
               VIS  
Sbjct: 532 KMNAVISEH 540



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 89/232 (38%), Gaps = 31/232 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R +SL    +++ A GS +V +GDT +L T      EE V     N +   I   Y M  
Sbjct: 14  RTLSLETGKIARQAHGSVVVNYGDTSVLVTVVSKKKEENVDFLPLNVQF--IAKSYAMGK 71

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125
              G   KRE   G+   R   I R+I R++R +          I + C+++  D     
Sbjct: 72  IP-GGFFKRE---GKPSDRETLISRVIDRSIRPLFPEGFHDE--ISVVCNLLTYDTVNPP 125

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDYGEDST 184
              A+ GA  AL                       +A +  G       I++    E   
Sbjct: 126 EVPALIGAVAALA-------------ISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKA 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             +D  F+  D   I+ V+  +E    S+++ F  +    + +  +IKL K+
Sbjct: 173 SSLDL-FLSGDENSILMVE--SEVKELSEENVFNAIKFGHEHLKPVIKLIKE 221


>gi|124266592|ref|YP_001020596.1| polynucleotide phosphorylase/polyadenylase [Methylibium
           petroleiphilum PM1]
 gi|187610284|sp|A2SFM2|PNP_METPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|124259367|gb|ABM94361.1| putative polyribonucleotide nucleotidyltransferase protein
           [Methylibium petroleiphilum PM1]
          Length = 751

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 92/247 (37%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L   TL  +        +      
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVITTLGTERDTQRIDALAGEFED 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL  V+      +  I +  +
Sbjct: 377 RFMFHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPKKDEFAYAIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +++ D                 LK HVA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGGCLSMMDAGV-------------PLKAHVAGIAMGLIKDGNRFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     L  AK+    ++  
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTTTG-VTALQMDIKIQGITKEIMQVALAQAKEARLHILGK 538

Query: 234 QKDVISN 240
             + +  
Sbjct: 539 MVEALGG 545



 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 58/169 (34%), Gaps = 24/169 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ + G+ +V    T +L T       +     +     +   T   G +P 
Sbjct: 18  VTLETGEIARQSGGAVIVDMDGTVVLATVVAAKNPKPGQDFFPLTVDYIEKTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  KRE   GR         R+I R LR +         Q+++    +  +     A
Sbjct: 77  --GSFFKRE---GRPSELETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSLNPEASADIA 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           A+ G+  AL                     G + A   G + G  +++ 
Sbjct: 132 ALIGSSAALAISGI-------------PFNGPIGAARVGYINGEYVLNP 167


>gi|47569084|ref|ZP_00239773.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9241]
 gi|49478386|ref|YP_037868.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|52141682|ref|YP_085148.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus E33L]
 gi|118479027|ref|YP_896178.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
           str. Al Hakam]
 gi|165872621|ref|ZP_02217252.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0488]
 gi|167635853|ref|ZP_02394162.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0442]
 gi|167639866|ref|ZP_02398135.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0193]
 gi|170687834|ref|ZP_02879048.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0465]
 gi|177652128|ref|ZP_02934674.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0174]
 gi|190568447|ref|ZP_03021354.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis
           Tsiankovskii-I]
 gi|196042164|ref|ZP_03109447.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
           NVH0597-99]
 gi|196044582|ref|ZP_03111817.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB108]
 gi|227813285|ref|YP_002813294.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           CDC 684]
 gi|228928856|ref|ZP_04091888.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935122|ref|ZP_04097949.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228986950|ref|ZP_04147076.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229092848|ref|ZP_04223982.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-42]
 gi|229123320|ref|ZP_04252524.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 95/8201]
 gi|229157384|ref|ZP_04285462.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
           4342]
 gi|229186044|ref|ZP_04313214.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BGSC
           6E1]
 gi|254683486|ref|ZP_05147346.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           CNEVA-9066]
 gi|254735845|ref|ZP_05193551.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           Western North America USA6153]
 gi|254739629|ref|ZP_05197323.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           Kruger B]
 gi|254755998|ref|ZP_05208029.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           Vollum]
 gi|81395117|sp|Q6HF08|PNP_BACHK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81686592|sp|Q636L9|PNP_BACCZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187470934|sp|A0RHH8|PNP_BACAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782704|sp|C3L7C0|PNP_BACAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|47554246|gb|EAL12608.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9241]
 gi|49329942|gb|AAT60588.1| polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|51975151|gb|AAU16701.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus E33L]
 gi|118418252|gb|ABK86671.1| polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           str. Al Hakam]
 gi|164711653|gb|EDR17199.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0488]
 gi|167512267|gb|EDR87644.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0193]
 gi|167528810|gb|EDR91568.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0442]
 gi|170668150|gb|EDT18899.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0465]
 gi|172082497|gb|EDT67562.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           A0174]
 gi|190560451|gb|EDV14429.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis
           Tsiankovskii-I]
 gi|196024617|gb|EDX63289.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB108]
 gi|196027016|gb|EDX65640.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
           NVH0597-99]
 gi|227006240|gb|ACP15983.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
           CDC 684]
 gi|228597463|gb|EEK55113.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BGSC
           6E1]
 gi|228626111|gb|EEK82860.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
           4342]
 gi|228660096|gb|EEL15732.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 95/8201]
 gi|228690470|gb|EEL44253.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock3-42]
 gi|228772728|gb|EEM21168.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228824487|gb|EEM70292.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830663|gb|EEM76268.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 712

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILN 536

Query: 233 LQKDVISNE 241
               VI+  
Sbjct: 537 HMLSVIAEP 545



 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|295427761|ref|ZP_06820393.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|295128119|gb|EFG57753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           subsp. aureus EMRSA16]
          Length = 638

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +     GS L   G T  L+     A  + ++   +   + 
Sbjct: 258 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 317

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RAL+ ++  +A     I I  
Sbjct: 318 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALKYIIPDTADFPYTIRIVS 373

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G +  A+I G+ +AL D                 +K  VA I+ G++       
Sbjct: 374 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 420

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G I  +Q   +    +++     L  A+    +++ 
Sbjct: 421 ILTDIQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMN 479

Query: 233 LQKDVISNE 241
                I   
Sbjct: 480 HMLQTIDQP 488



 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 21/169 (12%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR G  +    R+I R +R +         QI+        D   + AA+
Sbjct: 15  GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQMAAM 71

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            G+ +AL                    +G +A ++ G + G  I++    E     +D  
Sbjct: 72  IGSSMALS-------------VSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLE 118

Query: 191 FVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                D+ ++VE    A  +  ++      +    + I  L+  Q+ ++
Sbjct: 119 VAGHKDAVNMVE----AGASEITEQEMLEAIFFGHEEIQRLVDFQQQIV 163


>gi|254722007|ref|ZP_05183796.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
           A1055]
          Length = 712

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILN 536

Query: 233 LQKDVISNE 241
               VI+  
Sbjct: 537 HMLSVIAEP 545



 Score = 92.1 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    + I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHEEIKRLIAFQEEIV 223


>gi|218904934|ref|YP_002452768.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH820]
 gi|226702597|sp|B7JJ84|PNP_BACC0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218539646|gb|ACK92044.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH820]
          Length = 712

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILN 536

Query: 233 LQKDVISNE 241
               VI+  
Sbjct: 537 HMLSVIAEP 545



 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|297693867|ref|XP_002824217.1| PREDICTED: exosome complex exonuclease RRP43-like [Pongo abelii]
          Length = 276

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 89/257 (34%), Gaps = 25/257 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P        G++  
Sbjct: 23  RPDGRELGEFRTTTVNVGSISTADGSALVKLGNTTVICGVKAEFAAPP-TDAPDTGYVVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL---GSRQIII-D 115
              + P  +         SG  G  +Q   + I   +    ++    L     + + +  
Sbjct: 82  NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
           CD+  +  DG    A       AL +             + + + K +    ++ H  A 
Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRTHPVAT 196

Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           S  +      IVD    E+         VM + G +  +      +  +       ++ A
Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255

Query: 224 KDRIADLIKLQKDVISN 240
             R  ++ KL  +VI++
Sbjct: 256 VTRHKEVKKLMDEVINS 272


>gi|222475095|ref|YP_002563511.1| polyribonucleotide nucleotidyltransferase [Anaplasma marginale str.
           Florida]
 gi|257096679|sp|B9KIE3|PNP_ANAMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|222419232|gb|ACM49255.1| polyribonucleotide nucleotidyltransferase [Anaplasma marginale str.
           Florida]
          Length = 805

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 88/243 (36%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-TATL---EEKVPMWIRNTKHG 57
           R+ GR  +Q+R I +   +   + GS L   GDT  L  TA     +E+V       +  
Sbjct: 320 RVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVITALGTPQDEQVVDGFDGDRRE 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     + G      A     G R     ++  RA+  V+   A     I +  +
Sbjct: 380 RFLLHYNFPSYAVGE----AAALRPPGRREIGHGKLAWRAIHPVLPTKADFPYTIRVVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + ++DG +  A + GA +AL D    ++       +  + +G   A+         + D+
Sbjct: 436 ITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDRYAV---------LSDI 486

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   +      D     L  AKD    +I     V
Sbjct: 487 IGDEDYLGDMDFKVAGTKDG-ITALQMDMKIRGIGFDIIEKSLQQAKDGRLFIIGKMDKV 545

Query: 238 ISN 240
           I  
Sbjct: 546 IKE 548



 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 72/191 (37%), Gaps = 25/191 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R + +    +++ A+G+ +V +G T +L+T      +E V       +    +   G +P
Sbjct: 14  RLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKSKEPVDFLPLTVQFLAKSYAIGRIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   G+   R   I R++ R++R +          I+I C+++  D     
Sbjct: 74  ---GGFFKRE---GKPSDRETLISRLVDRSIRPLFPTGFCDE--IVIVCNLLSYD----- 120

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--IVDLDYGEDSTI 185
                  V+  + +  +   +            +A    G +      I++    E +  
Sbjct: 121 ------QVSPPETVALIGAAAALAISGIPFPTPIAGAKIGYIREEERYILNPSAEELARS 174

Query: 186 DVDANFVMTDS 196
           ++D  +  T S
Sbjct: 175 ELDMFYSGTKS 185


>gi|298368480|ref|ZP_06979798.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. oral taxon
           014 str. F0314]
 gi|298282483|gb|EFI23970.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. oral taxon
           014 str. F0314]
          Length = 705

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 95/244 (38%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPSPEEFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L  +  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AKD    +++  K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKDARLHILEQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|126304424|ref|XP_001382164.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 785

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 90/249 (36%), Gaps = 18/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R+IS    + +   GS L + G T +L T T +        + +   I  
Sbjct: 358 RCDGRDLTSLRDISCEVDMFRTLHGSALFQRGQTQVLCTVTFDSLESSLKSDPITTAISG 417

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   V+ R+ G       +  ++L  V+         I 
Sbjct: 418 IKEKNFMLHYEFPPYATNETGKVTGVNRRELGHG----ALAEKSLYPVIPKDF--PFTIR 471

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  + K        G +  Y 
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAIGLIAKNSSNKE--GEIEDYR 529

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T+ G I  +Q   +            +  A     ++++
Sbjct: 530 LLTDILGIEDYNGDMDFKMAGTNKG-ITALQADIKLPGIPIKIVMEAIQQATAAKREILQ 588

Query: 233 LQKDVISNE 241
           +    IS  
Sbjct: 589 IMNKTISKP 597



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 88/229 (38%), Gaps = 26/229 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R++ ++   ++++A+G  +V+ G+T ++ TA   T             +    A  G +P
Sbjct: 54  RKLEISSGRLARFADGCAVVQSGETAVMVTAVSKTKPSPSQFMPLVVDYKQKAAAAGRIP 113

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
               N ++RE  S     +     R+I R++R +         Q++ +   + +      
Sbjct: 114 ---TNHLRREFGS---SDKEILTSRIIDRSIRPLFPSGYFYDTQVLCNLLAVDSVNEPDV 167

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AI GA  AL                     G + A+  G++ G  IV+    E S   +
Sbjct: 168 LAINGASAALS-------------LSDIPWNGPIGAVRIGIIDGEYIVNPTRKEMSYSTL 214

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQK 235
           +       +  IV ++ +AE     Q  F   + +       +I+ +QK
Sbjct: 215 NLVVAGAPNSQIVMLEAAAENVL--QQDFCHAIKVGMKHNQQIIQGIQK 261


>gi|296085901|emb|CBI31225.3| unnamed protein product [Vitis vinifera]
          Length = 942

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 88/238 (36%), Gaps = 17/238 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56
           R  GR  + +R I+    +   A GS L   G+T  L   TL +     ++   +   + 
Sbjct: 437 RSDGRTPDGIRLINSQCGLLPRAHGSALFTRGETQSLAVVTLGDRQMAQRIDNLVDVDEL 496

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P   G   +  A S R+ G       +  RAL  ++         I ++ 
Sbjct: 497 KRFYLQYSFPPSCVGEVGRMGAPSRREIGHGM----LAERALEPILPSEDDFPYTIRVES 552

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175
            + +++G +  A++ G  +AL D    ++       +  VL             G P++ 
Sbjct: 553 TITESNGSSSMASVCGGCLALQDAGVPVKYSIAGIAMGMVLNTE-----EFGGDGTPLIL 607

Query: 176 -DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            D+   ED++ D+D     T+ G I   Q   +    +       L  AKD    ++ 
Sbjct: 608 SDITGSEDASGDMDFKVAGTEDG-ITAFQMDIKVGGITLPIMKQALLQAKDGRKQILA 664



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 88/235 (37%), Gaps = 28/235 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE--YGMLPR 68
           R I +      + A GS  V  G+T + T+  L + VP    +     +  +  +    R
Sbjct: 87  RHILVETGHIGRQASGSVTVTDGETIVYTSVCLAD-VPSEPSDFFPLSVNYQERFSAAGR 145

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126
           ++G   KRE   GR       I R+I R LR  +        QI+    V+  DG     
Sbjct: 146 TSGGFFKRE---GRTKDHEVLICRLIDRPLRPTMLKGFYHETQIL--SWVLSYDGLHSPD 200

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
           + A+T A +A+                   +   VA +  GM+    I++    E    +
Sbjct: 201 SLAVTAAGIAVA-------------LSELPISKAVAGVRVGMVGNKFIINPTTKEMEDSE 247

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           +D     TDS  I+ ++G        ++     + + +D +  +     + ++ +
Sbjct: 248 LDLLVAGTDSA-ILMIEG--YCNFLPEEKLLQAVEVGQDAVRAICNEV-EALAKK 298


>gi|163754268|ref|ZP_02161391.1| polynucleotide phosphorylase/polyadenylase [Kordia algicida OT-1]
 gi|161326482|gb|EDP97808.1| polynucleotide phosphorylase/polyadenylase [Kordia algicida OT-1]
          Length = 746

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 87/243 (35%), Gaps = 18/243 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +RL GR+ +++R I           GS +   G+T  L T TL    E            
Sbjct: 317 LRLDGRKTDEIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLGTSREANQIDMPSYEGE 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG        S R+ G       +  RAL+ +V         + +  
Sbjct: 377 ERFYLHYNFPPFSTGEARPIRGTSRREVGHG----NLAQRALKGMVPED--CPYTVRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G +  A +    +AL D    ++   +   +     G ++    G      + D
Sbjct: 431 EVLESNGSSSMATVCSGTMALMDAGVQLKKPVSGIAM-----GLISDADSGKYA--VLSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I   Q   +    S +     L  A+D    +++   D
Sbjct: 484 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKVKGLSYEILVNALKQARDGRLHILEKLTD 542

Query: 237 VIS 239
            I+
Sbjct: 543 TIA 545



 Score = 68.2 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 79/237 (33%), Gaps = 29/237 (12%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           REIS+      K A GS +V+ G   LL T      +  V        +    A  G  P
Sbjct: 16  REISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQSDVDFLPLTVDYREKFAAAGRYP 75

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KREA        +    R++ R LR +         Q++I   ++  D     
Sbjct: 76  ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKDYHAETQVMI--QLMSHD----- 122

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                    + D +  +   +         +  ++    G + G  I++    +    D+
Sbjct: 123 ------PEVMPDAMAGLAASAAIQLSDFPFECAISEARVGRINGEFIINPTRAQLEESDI 176

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ---KDVISNE 241
           D   +   +  ++ V+G  E    S++     +  A + I      Q    + I  +
Sbjct: 177 DM-MIGASADSVMMVEG--EMDEISEEEMTEAIKFAHEAIKVQCAAQLRLAEAIGKK 230


>gi|296412418|ref|XP_002835921.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629718|emb|CAZ80078.1| unnamed protein product [Tuber melanosporum]
          Length = 278

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 76/214 (35%), Gaps = 16/214 (7%)

Query: 29  LVKFGDTHLLTTATLE-EKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRS 87
            V+ G+T ++ +     E      RN++   +T +      S  +R KR    G+   R 
Sbjct: 70  YVEHGNTKVICSVNGPIEPRAASARNSERATVTVDVCFAAFSGTDRKKR----GKSDKRV 125

Query: 88  QEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDC 147
            E+Q  + R   + +  +     ++ I   ++  DG      +  A +AL D    M D 
Sbjct: 126 LEMQSALSRTFATTLLTTLHPRSEVHISLHILSQDGSILATCVNAATLALVDAGVPMSDY 185

Query: 148 SNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207
                   V    VA+ +     G P++D+   E+  +       +  S  I  +Q    
Sbjct: 186 --------VTACTVASYTNPDESGEPLLDMSSAEEMDLPGITLATVGRSDKISLLQL--- 234

Query: 208 RATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
                 +    ML +  D    + +L   VI   
Sbjct: 235 ETKVRLERLEGMLAVGIDGCGKIRQLLDGVIREH 268


>gi|262039265|ref|ZP_06012583.1| polyribonucleotide nucleotidyltransferase [Leptotrichia
           goodfellowii F0264]
 gi|261746759|gb|EEY34280.1| polyribonucleotide nucleotidyltransferase [Leptotrichia
           goodfellowii F0264]
          Length = 711

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 88/248 (35%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R  GR   ++R + +         GS L   G+T  L T TL  K        I +    
Sbjct: 321 RADGRTTTEIRPLDVEVDTLPVPHGSALFTRGETQALVTVTLGSKADEQIVDGIEDESRK 380

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      A   R+ G       +  RAL+ V+         + +  +
Sbjct: 381 KFFLHYNFPPYSVGEAGFLRAPGRRELGHG----NLAERALKYVMPDQETFPYTVRLVSE 436

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  +AL                   +K  VA I+ G++        
Sbjct: 437 ITESNGSSSQASICGGSLALMAAGV-------------PIKSTVAGIAMGLIKEGDTFTV 483

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     L  A +    +I  
Sbjct: 484 LTDIQGLEDHLGDMDFKVAGTKKG-ITAIQMDIKIEGITREIMDIALKQALEGRYFIIDK 542

Query: 234 QKDVISNE 241
            ++VIS  
Sbjct: 543 MEEVISEP 550



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 86/235 (36%), Gaps = 31/235 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
           ++ L+   +++ A GS +V+ G T LL TAT    ++E    +     +       G  P
Sbjct: 15  QVKLSTGKIARQAGGSVMVQCGGTVLLVTATRSKDVKEGQDFFPLTVDYIEKFYASGKFP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125
              G  VKRE+   R       I R++ R +R +     L    + I   V+  D     
Sbjct: 75  ---GGFVKRES---RPSTDEILISRLVDRPIRPLFPEGFL--NSVHIVITVVSYDEINQP 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              A  G  VAL                     G VA ++ G + G  +++    +    
Sbjct: 127 ENLATIGVSVAL-------------GLSDIPFAGTVAGVTVGYVDGEYVLNPTAEQLEKS 173

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ++  +   T    +  V+  A+    S++     +    +RI ++   Q   +S 
Sbjct: 174 EIHLSVAGTKDA-VTMVEAGAKE--VSEEVMLEAIMFGHERIKEICAEQDKFLSQ 225


>gi|110833194|ref|YP_692053.1| polynucleotide phosphorylase/polyadenylase [Alcanivorax borkumensis
           SK2]
 gi|123050749|sp|Q0VSR7|PNP_ALCBS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110646305|emb|CAL15781.1| polyribonucleotide nucleotidyltransferase [Alcanivorax borkumensis
           SK2]
          Length = 697

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 85/248 (34%), Gaps = 27/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R I           GS L   G+T  + TATL           +  +   
Sbjct: 316 RIDGRALDAVRAIDCQVGTLAKTHGSALFTRGETQAIVTATLGGMRDAQFIDALEGSHQD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
               +Y   P   G      +   R+ G      R+  R + +VV         I +  +
Sbjct: 376 HFMLQYNFPPYCVGETGFIGSPKRREIGHG----RLARRGVEAVVPSVQDFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           + +++G +  A++ G  +AL D                 L   VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGTSMALMDAGV-------------PLTAPVAGIAMGLVKEEDGRYA 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     LN A      ++ 
Sbjct: 479 VLSDILGDEDHLGDMDFKVAGTARG-VTALQMDIKIEGITEEIMEKALNQANAGRLHILG 537

Query: 233 LQKDVISN 240
                I+ 
Sbjct: 538 EMNKAIAE 545



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 79/228 (34%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L    +++ A  + +V+ GDT +L T    ++            +T  Y     +TG 
Sbjct: 16  VTLETGQIARQATAAVMVRIGDTQVLVTVVGRKEANP---GQNFFPLTVNYQEKTYATGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                +KRE   GR   +     R+I R +R +     +   Q++        +     A
Sbjct: 73  IPGGFLKRE---GRPSEKETLTCRLIDRPIRPLFPKGFMNEVQVVATVMSSDKNRDPDIA 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G   AL                     G + A   G   G  I++  Y E +   +D
Sbjct: 130 ALIGTSAALSISGI-------------PFSGPIGAARVGYKDGMYILNPSYSELAESALD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T+   ++     +E    S+D     +      +  LI+  K+
Sbjct: 177 LVVAGTEPAVLMV---ESEAQELSEDQMLGAVLFGHMEMQPLIQGIKE 221


>gi|323489596|ref|ZP_08094823.1| polynucleotide phosphorylase/polyadenylase [Planococcus donghaensis
           MPA1U2]
 gi|323396727|gb|EGA89546.1| polynucleotide phosphorylase/polyadenylase [Planococcus donghaensis
           MPA1U2]
          Length = 705

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 84/245 (34%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHL--LTT--ATLEEKVPMWIRNTKH 56
           +R  GR  +++R +S    +     GS L   G T    + T  A  + ++   +     
Sbjct: 313 IRPDGRGPSEIRPLSSEVGILNRTHGSGLFTRGQTQAMSICTLGALGDVQIIDGLGIEDT 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G            G R      +  RAL +V+         I +  
Sbjct: 373 KRFMHHYNFPLFSVGE----TGFLRGPGRREIGHGALGERALEAVIPNEKDFPYTIRLVA 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G T  A+I  + +A+ D    +        +  V KG    +         + D
Sbjct: 429 EVLESNGSTSQASICASTLAMMDAGVPLTAPVAGIAMGLVKKGDNYTV---------LSD 479

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I  +Q   +    S++     L  A+     +++    
Sbjct: 480 IQGMEDHLGDMDFKVAGTAKG-ITALQMDIKIDGLSREILEEALTQAQIGRIHILESMLA 538

Query: 237 VISNE 241
            I+  
Sbjct: 539 TIAEP 543



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 94/235 (40%), Gaps = 27/235 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           RE+ +    ++K A G+ L+++GDT +L+TAT     + +  +     +       G +P
Sbjct: 15  RELQVEVGQLAKQANGAALIRYGDTAVLSTATASKTPKPLDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q+I     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKATLTSRLIDRPIRPLFPDGFRNEVQVISMVMSVDQDCPSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G++ G  I++    +     +
Sbjct: 129 AAMFGSSLAL-------------MISDIPFGGPIAGVIVGLIDGQYIINPTNDQLEQSSI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           +     T    I  V+  A+    S++     +    + I  LI  Q + I+ EV
Sbjct: 176 NLIVAGTKDA-INMVEAGAKE--VSEEVILEAIMFGHEEIKKLIAFQ-EQIAEEV 226


>gi|83595114|ref|YP_428866.1| polynucleotide phosphorylase/polyadenylase [Rhodospirillum rubrum
           ATCC 11170]
 gi|123766875|sp|Q2RMR6|PNP_RHORT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|83578028|gb|ABC24579.1| 3' exoribonuclease [Rhodospirillum rubrum ATCC 11170]
          Length = 708

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 92/248 (37%), Gaps = 26/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR    +R I +   +   A GS L   G+T  L T TL       I +   G   
Sbjct: 314 LRIDGRDTKTVRPIEIYPGILPRAHGSALFTRGETQALVTTTLGTGQDEQIIDALEGEYR 373

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R     ++  RA+  ++         + +  
Sbjct: 374 ENFMLHYNFPPYSVGEAGR----MGSPGRREIGHGKLAWRAIHPMMPAKDAFPYTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++ +++G +  A + G  +AL D                 LK  VA I+ G++       
Sbjct: 430 EITESNGSSSMATVCGTSLALMDAGV-------------PLKNAVAGIAMGLIKEDERFA 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I  +Q   +  + +++     LN AKD    ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGTANG-ITSLQMDIKITSITKEIMNVALNQAKDGRIHILG 535

Query: 233 LQKDVISN 240
                + N
Sbjct: 536 EMTKALGN 543



 Score = 85.5 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 81/228 (35%), Gaps = 30/228 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R++ L    +++ A+G+ +   GDT +L TA     + K   +     +   T   G +P
Sbjct: 16  RKLVLETGRIARQADGAVMASLGDTTVLCTAVGAKTKSKFDFFPLTVNYQEKTFAAGKIP 75

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125
              G   KRE   GR   +   + R+I R +R +         Q++  C V+  D     
Sbjct: 76  ---GGFFKRE---GRPSEKETLVSRLIDRPIRPLFVHGYKNETQLV--CTVLCHDLENNP 127

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI GA  AL                     G + A   G++ G  +++    + +  
Sbjct: 128 DIVAIVGASAALTLSGL-------------PFLGPIGAARVGLIDGAFVLNPTRDQMADS 174

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
            +D     T  G ++     +E    S+      +    +    +I  
Sbjct: 175 VLDLVVAGTREGVLMV---ESEAHELSEQQMLDAVMFGHEGYQPVIDA 219


>gi|301055297|ref|YP_003793508.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis CI]
 gi|300377466|gb|ADK06370.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 712

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAHG-VTALQMDIKIDGLSREILEEALQQAKVGRVHILN 536

Query: 233 LQKDVISNE 241
               VI+  
Sbjct: 537 HMLSVIAEP 545



 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L+TAT   +   V  +     +       G +P
Sbjct: 15  RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASREAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|124483602|emb|CAM32674.1| Polyribonucleotide nucleotidyltransferase [Herbaspirillum
           seropedicae]
          Length = 712

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 94/242 (38%), Gaps = 20/242 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R IS+   V     GS L   G+T  L  ATL       + +   G    
Sbjct: 320 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIATLGTARDGQVIDAVAGEYKE 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIIDC 116
                Y   P S G   +      R+ G      R+  R + +V+  L A     I +  
Sbjct: 380 NFLFHYNFPPFSVGECGRMMGPKRREIGHG----RLAKRGVLAVMPSLEAFP-YTIRLVS 434

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++ +++G +  A++ G+ +AL D    M+       +  + +G+  A+         + D
Sbjct: 435 EITESNGSSSMASVCGSSLALMDAGVPMKAHVAGIAMGLIKEGNKFAV---------LTD 485

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T +G I  +Q   +    +++     L  AK+    ++   ++
Sbjct: 486 ILGDEDHLGDMDFKVAGTANG-ITALQMDIKIQGITKEIMQVALEQAKEGRHHILGKMQE 544

Query: 237 VI 238
            +
Sbjct: 545 AV 546



 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 27/233 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
           +++L    +++ A G+ +V   DT +L T    ++       +     +   T   G +P
Sbjct: 15  QVTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLTVDYIEKTYAAGRIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   G+   +     R+I R +R +     L   Q+II    +  +     
Sbjct: 75  ---GGFFKRE---GKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSVNPEIDPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G V A   G + G  +++    +  +  +
Sbjct: 129 PAMIGASAALSLAGI-------------PFNGPVGAARVGYIDGQYVLNPTTSQLKSSQL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     T++  ++     +E    S++     +    D+   +I+    ++ +
Sbjct: 176 DLVVAGTETAVLMV---ESEADQLSEEVMLGAVVFGHDQSKAVIEAIHALVRD 225


>gi|313149393|ref|ZP_07811586.1| polyribonucleotide nucleotidyltransferase [Bacteroides fragilis
           3_1_12]
 gi|313138160|gb|EFR55520.1| polyribonucleotide nucleotidyltransferase [Bacteroides fragilis
           3_1_12]
          Length = 711

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 92/250 (36%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR+  ++R I           GS +   G+T  LT+ TL  K+   I +        
Sbjct: 382 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLAHGKE 441

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+ ++         + +  D
Sbjct: 442 RFLLHYNFPPFSTGEAKAQRGVGRREIGHG----NLAHRALKKMIPED--YPYVVRVVSD 495

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 496 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNAGEEKY 542

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     LN AK+    ++
Sbjct: 543 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHIL 601

Query: 232 KLQKDVISNE 241
              ++ I+  
Sbjct: 602 GKIQETIAEP 611



 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHGWITAEYGML 66
           R I+L      K A+GS +++ G+T LL T    ++ VP         ++    A +G  
Sbjct: 78  RTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYKEKFAAFGRF 137

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR         R++ RALR +   +      + ++  +  ADG   
Sbjct: 138 P---GGFTKRE---GRASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIILFSADG--- 186

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                   V + D L  +   +          G ++ +    + G  +++  + +    D
Sbjct: 187 --------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGKFVINPTFDQLEKAD 238

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T   +I+ V+G  E +  S+      + +A + I    K Q +
Sbjct: 239 MDIMVAATYE-NIMMVEG--EMSEVSEAELLEAMKVAHEAIKVHCKAQME 285


>gi|15614970|ref|NP_243273.1| polynucleotide phosphorylase/polyadenylase [Bacillus halodurans
           C-125]
 gi|81786500|sp|Q9KA83|PNP_BACHD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|10175027|dbj|BAB06126.1| polynucleotide phosphorylase [Bacillus halodurans C-125]
          Length = 704

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 88/248 (35%), Gaps = 26/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 313 IRPDGREIDEIRPLSSQVGILPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGIEES 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G            G R      +  RAL  V+         I +  
Sbjct: 373 KRFMHHYNFPQFSVGE----TGPIRGPGRREIGHGALGERALEPVIPSEQDFPYTIRLVS 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 429 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKQDEHVS 475

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G +  +Q   + +   +      L  A+     ++ 
Sbjct: 476 VLTDIQGMEDALGDMDFKVAGTRKG-VTALQMDIKISGIDRAILEQALEQARKGRMIILD 534

Query: 233 LQKDVISN 240
              + IS 
Sbjct: 535 NMLEAISE 542



 Score = 95.2 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 93/229 (40%), Gaps = 26/229 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K +P +     +       G +P
Sbjct: 15  RKLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEPKDLPFFPLTVNYEERLYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q+I     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFPEGFRNEVQVISIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  +++    +    D+
Sbjct: 129 AAMVGSSLALS-------------ISDIPFEGPIAGVTVGRIDGQFVINPTQDQLEKSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                 T    I  V+  AE     +D     +    + I  LI+ Q+ 
Sbjct: 176 HLVVAGTKDA-INMVEAGAEEVP--EDVMLEAIMFGHNEIKRLIEFQEK 221


>gi|219685671|ref|ZP_03540485.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia garinii Far04]
 gi|219672787|gb|EED29812.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) [Borrelia garinii Far04]
          Length = 721

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 91/248 (36%), Gaps = 27/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR  N++R++     +     GS L   G+T  L       +++E++   I   K 
Sbjct: 315 IRTDGRTPNEIRDVIAEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G    R     R+ G       +  RAL S+V         I +  
Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRALESMVPGKNDFPYTIRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++++++G +  A +    ++L                   +K  VA I+ G++       
Sbjct: 430 EILESNGSSSMATVCAGSMSLMSAGV-------------PVKRQVAGIAMGLISEGDKYV 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I   Q   +    ++      L  A+     ++ 
Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKIENVTKHLMRDALEQARIGRMHILS 535

Query: 233 LQKDVISN 240
           +   VIS+
Sbjct: 536 VMDTVISD 543



 Score = 91.3 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 86/240 (35%), Gaps = 32/240 (13%)

Query: 5   GRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWI 59
           GR  +++           K A GS L  +G + +L T      + E +     + ++   
Sbjct: 10  GR--DEL---VFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNEK 64

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
               G +P   G  +KRE   G+   +   + R+I R +R + D       Q+I      
Sbjct: 65  YYAAGKIP---GGFIKRE---GKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLAT 118

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
                     +  A+ A+             F       G +AA+    L G  IV+  +
Sbjct: 119 DQLNPPDIVGMNAAFTAV-------------FLSDIPFNGPIAAVRMVYLNGEFIVNPSF 165

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            E    D+D   V      I  V+G A     S+D   + ++ A + I  +   QK+ + 
Sbjct: 166 EEIHNSDLDI-VVAGSLNGITMVEGGANE--VSEDILLSAIDGAHEYIKQICNAQKEFLE 222


>gi|329943105|ref|ZP_08291879.1| S1 RNA binding domain protein [Chlamydophila psittaci Cal10]
 gi|332287687|ref|YP_004422588.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
           6BC]
 gi|313848261|emb|CBY17262.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
           RD1]
 gi|325507208|gb|ADZ18846.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
           6BC]
 gi|328814652|gb|EGF84642.1| S1 RNA binding domain protein [Chlamydophila psittaci Cal10]
 gi|328914940|gb|AEB55773.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
           6BC]
          Length = 694

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 88/247 (35%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMW--IRNTKH 56
           +R  GR    +R IS+         GSCL   G+T  +   TL  E     +  +     
Sbjct: 313 IRSDGRSITTIRPISIETSFLPRTHGSCLFTRGETQTMAVCTLGSEAMAQRYEDLNGEGL 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +     G  G R     ++  +AL   +         I I+ 
Sbjct: 373 AKFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHTLPDPVKFPYTIRIES 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
            + +++G +  A++ G  +AL D                 +K  +A I+ G++       
Sbjct: 429 SITESNGSSSMASVCGGCLALMDAGV-------------PIKTPIAGIAMGLILDDDHVT 475

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D        G I   Q   +    +     A L  AKD   D+++
Sbjct: 476 ILSDISGLEDHLGDMDFKVAGNTEG-ITAFQMDIKVEGITPAIMRAALAQAKDGRQDILE 534

Query: 233 LQKDVIS 239
             K  ++
Sbjct: 535 TMKQALA 541



 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 80/227 (35%), Gaps = 30/227 (13%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHL---LTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
                +++ A G+ L +  +T +   +  A LEE V        +     ++  + ++ G
Sbjct: 18  FETGKIARQANGAVLARMQETWVFSSVCAANLEEAVDFLPLRVDYQE---KFSSIGKTLG 74

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAA 129
             +KRE   GR   R     R+I R++R  +    +   QI+        DG T     A
Sbjct: 75  GFIKRE---GRPTEREILTSRLIDRSMRPSLPNRLMQDVQILSYVW--SYDGVTLPDPIA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           I G   AL                       VA +  G +    +V+    E     ++ 
Sbjct: 130 ICGVSAALA-------------ISDIPQTSIVAGVRVGFVNNRWVVNPTKAEMDVSRMEL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
               T++  I+ ++G      F+++     +      I  + K  KD
Sbjct: 177 VLAGTENA-ILMIEG--HCDFFTEEQVIEAIEFGHKHIVTICKALKD 220


>gi|261364736|ref|ZP_05977619.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa ATCC
           25996]
 gi|288567035|gb|EFC88595.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa ATCC
           25996]
          Length = 706

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 95/244 (38%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPSPEEFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L  +  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AKD    +++  K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKDARLHILEQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 75.5 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 74/217 (34%), Gaps = 27/217 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASTALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                T    ++     +E    S+D     +    D
Sbjct: 177 LVVAGTSKAVLMV---ESEAKILSEDVMLGAVVYGHD 210


>gi|255066227|ref|ZP_05318082.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca ATCC
           29256]
 gi|255049437|gb|EET44901.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca ATCC
           29256]
          Length = 706

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 95/244 (38%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPSPEEFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L  +  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AKD    +++  K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKDARLHILEQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|314933453|ref|ZP_07840818.1| polyribonucleotide nucleotidyltransferase [Staphylococcus caprae
           C87]
 gi|313653603|gb|EFS17360.1| polyribonucleotide nucleotidyltransferase [Staphylococcus caprae
           C87]
          Length = 699

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 89/243 (36%), Gaps = 18/243 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +   A GS L   G T  L+     A  + ++   +     
Sbjct: 318 IRPDGRKVDEIRPLDSEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEVE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RALR ++  +A     I I  
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALRYIIPDTADFPYTIRIVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G +  A+I G+ +AL D    ++       +  V +     I         + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTI---------LTD 484

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T  G I  +Q   +    +++     L  A+     ++     
Sbjct: 485 IQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQ 543

Query: 237 VIS 239
            I 
Sbjct: 544 TIG 546



 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 91/232 (39%), Gaps = 28/232 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ LV++GDT +L+TAT          +     +       G +P
Sbjct: 15  RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR G  +    R+I R +R +         QI+       +D     
Sbjct: 75  ---GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADSDCSPEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  +++    E     +
Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYVDGNYVINPSVAEKEVSRL 175

Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D       D+ ++VE    A  +  ++      +    + I  L+  Q+++I
Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITESEMLEAIFFGHEEIKRLVAFQQEII 223


>gi|294784020|ref|ZP_06749342.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           1_1_41FAA]
 gi|294479832|gb|EFG27611.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           1_1_41FAA]
          Length = 703

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 93/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
           R+ GR   ++R +     V     GS L   G+T  L   TL  K    + +      + 
Sbjct: 328 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKADEQLIDDLEKEYYK 387

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RALR V+         I +  +
Sbjct: 388 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGS----LAERALRYVIPSEEEFPYTIRVVSE 443

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  ++L                   +K HVA I+ G++        
Sbjct: 444 ITESNGSSSQASICGGSLSLMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 490

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T SG I  +Q   +    +++     LN A +    ++++
Sbjct: 491 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHEARIQILEV 549

Query: 234 QKDVISNE 241
             + IS  
Sbjct: 550 MNNTISKP 557



 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 84/231 (36%), Gaps = 33/231 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + ++   +S+ + G+ ++++GDT +L+TA       +    +     +       G  
Sbjct: 18  RTLKVSTGKISRQSSGAIVIQYGDTVVLSTANRSKEARKGADFFPLTVDYVEKFYSTGKF 77

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR    +  I R+I R +R +       +  + I   V+  D    
Sbjct: 78  P---GGFNKRE---GRPSTNATLIARLIDRPIRPMFPDGF--NYDVHIVNTVLSYDEVNT 129

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
                I G+ +AL                     G VA ++ G   G  I++    E   
Sbjct: 130 PDYLGIIGSSLAL-------------MISDIPFLGPVAGVTVGYKNGEFILNPSPAELEE 176

Query: 185 IDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            ++D +   T    ++VE    A      ++     +  A D I  + + Q
Sbjct: 177 SELDLSVAGTKDAVNMVE----AGAKELDEETMLKAIMFAHDNIKKICEFQ 223


>gi|223044246|ref|ZP_03614283.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis
           SK14]
 gi|222442396|gb|EEE48504.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis
           SK14]
          Length = 699

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 86/230 (37%), Gaps = 18/230 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +   A GS L   G T  L+     A  + ++   +     
Sbjct: 318 IRPDGRKVDEIRPLDSEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEVE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RALR ++  +A     I I  
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALRYIIPDTADFPYTIRIVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G +  A+I G+ +AL D    ++       +  V +     I         + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTI---------LTD 484

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           +   ED+  D+D     T  G I  +Q   +    +++     L  A+  
Sbjct: 485 IQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREVIEEALEQARQG 533



 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 28/232 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ LV++GDT +L+TAT          +     +       G +P
Sbjct: 15  RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR G  +    R+I R +R +         QI+        D     
Sbjct: 75  ---GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  +++    E     +
Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYVDGNYVINPSVNEKEVSRL 175

Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D       D+ ++VE    A  +  ++      +    + I  L+  Q+++I
Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITESEMLEAIFFGHEEIKRLVAFQQEII 223


>gi|225439207|ref|XP_002270169.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 946

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 88/238 (36%), Gaps = 17/238 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56
           R  GR  + +R I+    +   A GS L   G+T  L   TL +     ++   +   + 
Sbjct: 437 RSDGRTPDGIRLINSQCGLLPRAHGSALFTRGETQSLAVVTLGDRQMAQRIDNLVDVDEL 496

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P   G   +  A S R+ G       +  RAL  ++         I ++ 
Sbjct: 497 KRFYLQYSFPPSCVGEVGRMGAPSRREIGHGM----LAERALEPILPSEDDFPYTIRVES 552

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175
            + +++G +  A++ G  +AL D    ++       +  VL             G P++ 
Sbjct: 553 TITESNGSSSMASVCGGCLALQDAGVPVKYSIAGIAMGMVLNTE-----EFGGDGTPLIL 607

Query: 176 -DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            D+   ED++ D+D     T+ G I   Q   +    +       L  AKD    ++ 
Sbjct: 608 SDITGSEDASGDMDFKVAGTEDG-ITAFQMDIKVGGITLPIMKQALLQAKDGRKQILA 664



 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 86/235 (36%), Gaps = 28/235 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGWITAEYGMLPR 68
           R I +      + A GS  V  G+T + T+  L + VP    +           +    R
Sbjct: 87  RHILVETGHIGRQASGSVTVTDGETIVYTSVCLAD-VPSEPSDFFPLSVNYQERFSAAGR 145

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126
           ++G   KRE   GR       I R+I R LR  +        QI+    V+  DG     
Sbjct: 146 TSGGFFKRE---GRTKDHEVLICRLIDRPLRPTMLKGFYHETQIL--SWVLSYDGLHSPD 200

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
           + A+T A +A+                   +   VA +  GM+    I++    E    +
Sbjct: 201 SLAVTAAGIAVA-------------LSELPISKAVAGVRVGMVGNKFIINPTTKEMEDSE 247

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           +D     TDS  I+ ++G        ++     + + +D +  +     + ++ +
Sbjct: 248 LDLLVAGTDSA-ILMIEG--YCNFLPEEKLLQAVEVGQDAVRAICNEV-EALAKK 298


>gi|125599245|gb|EAZ38821.1| hypothetical protein OsJ_23227 [Oryza sativa Japonica Group]
          Length = 778

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 93/245 (37%), Gaps = 33/245 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56
           R  GR   ++R I+    +   A GS L   G+T  L   TL +     ++   +   + 
Sbjct: 324 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEES 383

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +  A + R+ G       +  RAL  ++         I ++ 
Sbjct: 384 KSFYLQYTFPPSSVGEVGRIGAPNRREIGHGM----LAERALEPILPPEEDFPYTIRVES 439

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------- 169
            + +++G +  A++ G  +AL D                 +K  VA I+ G++       
Sbjct: 440 TITESNGSSSMASVCGGCLALQDAGV-------------PIKFPVAGIAMGLVLDTLEFG 486

Query: 170 -CGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             G P++  D+   ED++ D+D      ++G I   Q   +    +       L  A+D 
Sbjct: 487 GDGKPLILSDITGAEDASGDMDFKVAGNENG-ISAFQMDIKVVGITLPIMEHALLQARDG 545

Query: 227 IADLI 231
              ++
Sbjct: 546 RKHIL 550



 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 58/152 (38%), Gaps = 7/152 (4%)

Query: 84  GGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAWVALHDCL 141
            G +  + R+I R LR  +        QI+    V   DG     + AIT A VA+  C 
Sbjct: 33  DGETVLVCRLIDRPLRPTMPKGFYYETQIL--SWVFSYDGIHSPDSLAITAAGVAICSCS 90

Query: 142 QHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVE 201
              +    +       K  +A +  GM+    +V+    +    ++D     TDS  I+ 
Sbjct: 91  YLPQSFLCRALSEVPNKQTIAGVRVGMINDQFVVNPTTEQMDDSELDLVMAGTDSA-ILM 149

Query: 202 VQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           ++G       +++     +   +  I ++ K 
Sbjct: 150 IEG--YCDFLTEEKLLQAVETGQGAIREICKA 179


>gi|115653057|ref|XP_788673.2| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1
           [Strongylocentrotus purpuratus]
 gi|115929402|ref|XP_001192933.1| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1
           [Strongylocentrotus purpuratus]
          Length = 981

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 89/246 (36%), Gaps = 15/246 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE------EKVPMWIRNTK 55
           R  GR+ ++MR+I+ +  + K   GS L + G T +  T T +         P+W  + +
Sbjct: 538 RCDGREADEMRDITCSVDLYKPLHGSALFQRGQTQVFCTVTFDSIESALRADPVWQEDIR 597

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P +T    +   ++ R+ G       +  + LR VV         I + 
Sbjct: 598 EKNFMLHYEFPPYATNETGRTGGINRRELGHG----ALAEKGLRPVVPSD--YPFTIRLT 651

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            +V++++G +  A + G  +AL D    +        +  + +     I   +     + 
Sbjct: 652 SEVLESNGSSSMATVCGGSLALMDAGVPVSHPVAGVAIGVITETEPDDI-FTIKDHRIVT 710

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           DL   ED   D+D     +  G I  +Q +  +           +       + ++ +  
Sbjct: 711 DLLGIEDYMGDMDMKLAGSKKG-ITALQ-TDVKVPLPMKIIVEAIQAGTAAKSKILNIMA 768

Query: 236 DVISNE 241
             I   
Sbjct: 769 SSIRKP 774



 Score = 79.0 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 77/215 (35%), Gaps = 26/215 (12%)

Query: 22  KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSG 81
           K A+G    + GDT ++ TA           +     +T +Y     + G R+    +  
Sbjct: 245 KLADGCATAQIGDTTVMVTAV----SKKNSSSPGFLPLTVDYRQKAAAAG-RIPTNHLRR 299

Query: 82  RQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAWVAL 137
            +G   QEI   RMI R++R +         Q  + C+++  DG       +I GA  AL
Sbjct: 300 ERGVTDQEILTSRMIDRSIRPLFPKGFFYDTQ--VMCNLLAVDGLQDPGVISINGASAAL 357

Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197
                                G + A+  G++    +++    +     ++     T   
Sbjct: 358 A-------------LSDVPWNGPIGAVRVGLIDEEVMINPTRLDMRRSTINMVVAGTKKS 404

Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++V V+ SA+     Q  F   L         +++
Sbjct: 405 NLVMVEASADNVL--QTDFLKALKAGLKETQIIVR 437


>gi|254796456|ref|YP_003081292.1| polyribonucleotide nucleotidyltransferase [Neorickettsia risticii
           str. Illinois]
 gi|254589702|gb|ACT69064.1| polyribonucleotide nucleotidyltransferase [Neorickettsia risticii
           str. Illinois]
          Length = 638

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 95/245 (38%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR   ++R IS+         GS L   G T  L  ATL    +E+V   I   + 
Sbjct: 199 IRPDGRSLTEIRPISIALDYLPGTHGSALFTRGGTQSLVVATLGSYQDEQVMDDIDGERR 258

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
             +   Y  LP + G      A   R+ G      R+  +A+++V+    +    + +  
Sbjct: 259 ESVLLHYNFLPYAVGEVGALRAPGRREIGHG----RLALKAVKAVLPGKEVFPYTLRLVS 314

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++ ++DG +  A + G+ +AL D    +        +  +  G  +AI         + D
Sbjct: 315 EITESDGSSSMATVCGSSLALMDTGVPITKHVAGIAMGLITDGARSAI---------LSD 365

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T +G IV +Q   +    S       LN A      +++  + 
Sbjct: 366 ISGDEDMLGDMDFKVAGTRNG-IVALQMDMKVRGISIATIRNALNQALAGRLHILEKMEH 424

Query: 237 VISNE 241
            I+  
Sbjct: 425 AIAKP 429


>gi|125557368|gb|EAZ02904.1| hypothetical protein OsI_25038 [Oryza sativa Indica Group]
          Length = 865

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 93/245 (37%), Gaps = 33/245 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56
           R  GR   ++R I+    +   A GS L   G+T  L   TL +     ++   +   + 
Sbjct: 411 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEES 470

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +  A + R+ G       +  RAL  ++         I ++ 
Sbjct: 471 KSFYLQYTFPPSSVGEVGRIGAPNRREIGHGM----LAERALEPILPPEEDFPYTIRVES 526

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------- 169
            + +++G +  A++ G  +AL D                 +K  VA I+ G++       
Sbjct: 527 TITESNGSSSMASVCGGCLALQDAGV-------------PIKFPVAGIAMGLVLDTLEFG 573

Query: 170 -CGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             G P++  D+   ED++ D+D      ++G I   Q   +    +       L  A+D 
Sbjct: 574 GDGKPLILSDITGAEDASGDMDFKVAGNENG-ISAFQMDIKVVGITLPIMEHALLQARDG 632

Query: 227 IADLI 231
              ++
Sbjct: 633 RKHIL 637



 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 58/152 (38%), Gaps = 7/152 (4%)

Query: 84  GGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAWVALHDCL 141
            G +  + R+I R LR  +        QI+    V   DG     + AIT A VA+  C 
Sbjct: 120 DGETVLVCRLIDRPLRPTMPKGFYYETQIL--SWVFSYDGIHSPDSLAITAAGVAICSCS 177

Query: 142 QHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVE 201
              +    +       K  +A +  GM+    +V+    +    ++D     TDS  I+ 
Sbjct: 178 YLPQSFLCRALSEVPNKQTIAGVRIGMINDQFVVNPTTEQMDDSELDLVMAGTDSA-ILM 236

Query: 202 VQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           ++G       +++     +   +  I ++ K 
Sbjct: 237 IEG--YCDFLTEEKLLQAVETGQGAIREICKA 266


>gi|229592632|ref|YP_002874751.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens
           SBW25]
 gi|259534147|sp|C3K255|PNP_PSEFS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|229364498|emb|CAY52345.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens
           SBW25]
          Length = 701

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 89/229 (38%), Gaps = 18/229 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R++ +++  + +    I +  +
Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSISAMLPAADVFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    M+       +  V +G   AI         + D+
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGQKFAI---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
              ED   D+D     T  G +  +Q   +    +++     L  A + 
Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKIKGITEEIMEIALGQALEA 530



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 49/167 (29%), Gaps = 20/167 (11%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR   +     R+I R +R +     +   Q++              AA+
Sbjct: 75  GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAM 131

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDVDA 189
            G   AL                     G + A           +++  Y +     +D 
Sbjct: 132 IGTSAALAISGI-------------PFDGPIGAARVAFHESTGYLLNPTYEQQKASSLDM 178

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
               T    ++     +E    ++D     +  A D    +I   K+
Sbjct: 179 VVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAVKE 222


>gi|302381329|ref|YP_003817152.1| polyribonucleotide nucleotidyltransferase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302191957|gb|ADK99528.1| polyribonucleotide nucleotidyltransferase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 764

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 89/241 (36%), Gaps = 17/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR  +++R+I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 333 RVDGRALDKVRDIVSEVGIFPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLAGTYKE 392

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      ++  RA+R ++  S      I I  +
Sbjct: 393 KFLLHYNFPPYSVGETGRMGGAGRREIGHG----KLAWRAIRPMLPTSEEFPYTIRIVSE 448

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    ++   +   +  +L+               + D+
Sbjct: 449 ITESNGSSSMASVCGASLALMDAGVPLKKPVSGIAMGLILEPSGEFA--------ILSDI 500

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   + A  +++     +  A      ++      
Sbjct: 501 LGDEDHLGDMDFKVAGTRDG-ITSLQMDIKVAGITEEIMKKAIAQASAGRLHILDEMDKA 559

Query: 238 I 238
           I
Sbjct: 560 I 560



 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 73/229 (31%), Gaps = 31/229 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R ++L    +++ A+G+ L  +G+T +L T          +       +T  Y     + 
Sbjct: 30  RPLTLETGRIARQADGAVLATYGETIVLATVVYGRAPKPGL---DFFPLTVNYQEKTFAA 86

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           G       KRE   GR   +   + R+I R +R +         Q++I   V+Q D    
Sbjct: 87  GKIPGGYFKRE---GRPTEKETLVSRLIDRPIRPLFVKGFKNETQVVIT--VLQHDLEND 141

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
                +     AL                     G + A   G + G  +++    +   
Sbjct: 142 PDIVGMVATSAAL-------------TLSGVPFMGPIGAARVGYIDGEFVLNPTLDQMPD 188

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
             +D     T       +   +E    S+      L  A   +  +I  
Sbjct: 189 SQLDLVVAGTSD---ALMMVESEAKELSEQVMLDALMFAHRGMQPVIDA 234


>gi|115470767|ref|NP_001058982.1| Os07g0168000 [Oryza sativa Japonica Group]
 gi|50509724|dbj|BAD31776.1| putative polynucleotide phosphorylase [Oryza sativa Japonica Group]
 gi|113610518|dbj|BAF20896.1| Os07g0168000 [Oryza sativa Japonica Group]
          Length = 902

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 93/245 (37%), Gaps = 33/245 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56
           R  GR   ++R I+    +   A GS L   G+T  L   TL +     ++   +   + 
Sbjct: 448 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEES 507

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +  A + R+ G       +  RAL  ++         I ++ 
Sbjct: 508 KSFYLQYTFPPSSVGEVGRIGAPNRREIGHGM----LAERALEPILPPEEDFPYTIRVES 563

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------- 169
            + +++G +  A++ G  +AL D                 +K  VA I+ G++       
Sbjct: 564 TITESNGSSSMASVCGGCLALQDAGV-------------PIKFPVAGIAMGLVLDTLEFG 610

Query: 170 -CGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             G P++  D+   ED++ D+D      ++G I   Q   +    +       L  A+D 
Sbjct: 611 GDGKPLILSDITGAEDASGDMDFKVAGNENG-ISAFQMDIKVVGITLPIMEHALLQARDG 669

Query: 227 IADLI 231
              ++
Sbjct: 670 RKHIL 674



 Score = 75.1 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 81/229 (35%), Gaps = 31/229 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R I +      + A  S +V  G+T + ++     T  +    +  +  +          
Sbjct: 99  RHILVETGHIGRQASASVMVTDGETIVYSSVCLADTPNDPSDFFPMSVHYQE---RLSAA 155

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--G 124
            R++G   KRE   GR       + R+I R LR  +        QI+    V   DG   
Sbjct: 156 GRTSGGFFKRE---GRAKDHEVLVCRLIDRPLRPTMPKGFYYETQIL--SWVFSYDGIHS 210

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
             + AIT A VA+                    K  +A +  GM+    +V+    +   
Sbjct: 211 PDSLAITAAGVAMA-------------LSEVPNKQTIAGVRVGMINDQFVVNPTTEQMDD 257

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
            ++D     TDS  I+ ++G       +++     +   +  I ++ K 
Sbjct: 258 SELDLVMAGTDSA-ILMIEG--YCDFLTEEKLLQAVETGQGAIREICKA 303


>gi|255003073|ref|ZP_05278037.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale
           str. Puerto Rico]
          Length = 805

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 88/243 (36%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-TATL---EEKVPMWIRNTKHG 57
           R+ GR  +Q+R I +   +   + GS L   GDT  L  TA     +E+V       +  
Sbjct: 320 RVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVITALGTPQDEQVVDGFDGDRRE 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     + G      A     G R     ++  RA+  V+   A     I +  +
Sbjct: 380 RFLLHYNFPSYAVGE----AAALRPPGRREIGHGKLAWRAIHPVLPTKADFPYTIRVVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + ++DG +  A + GA +AL D    ++       +  + +G   A+         + D+
Sbjct: 436 ITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDRYAV---------LSDI 486

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   +      D     L  AKD    +I     V
Sbjct: 487 IGDEDYLGDMDFKVAGTKDG-ITALQMDMKIRGIGFDIIEKSLQQAKDGRLFIIGKMDKV 545

Query: 238 ISN 240
           I  
Sbjct: 546 IKE 548



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 71/191 (37%), Gaps = 25/191 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R + +    +++ A+G+ +V +G T +L+T      +E V       +    +   G +P
Sbjct: 14  RLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKSKEPVDFLPLTVQFLAKSYAIGRIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   G+   R   I R++ R++R +          I+  C+++  D     
Sbjct: 74  ---GGFFKRE---GKPSDRETLISRLVDRSIRPLFPTGFCDESVIV--CNLLSYD----- 120

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--IVDLDYGEDSTI 185
                  V+  + +  +   +            +A    G +      I++    E +  
Sbjct: 121 ------QVSPPETVALIGAAAALAISGIPFPTPIAGAKIGYIREEERYILNPSAEELARS 174

Query: 186 DVDANFVMTDS 196
           ++D  +  T S
Sbjct: 175 ELDMFYSGTKS 185


>gi|126698917|ref|YP_001087814.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           630]
 gi|254974863|ref|ZP_05271335.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           QCD-66c26]
 gi|255092250|ref|ZP_05321728.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           CIP 107932]
 gi|255100339|ref|ZP_05329316.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           QCD-63q42]
 gi|255306276|ref|ZP_05350447.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           ATCC 43255]
 gi|255313990|ref|ZP_05355573.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           QCD-76w55]
 gi|255516670|ref|ZP_05384346.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           QCD-97b34]
 gi|255649769|ref|ZP_05396671.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           QCD-37x79]
 gi|260682926|ref|YP_003214211.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           CD196]
 gi|260686524|ref|YP_003217657.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           R20291]
 gi|306519874|ref|ZP_07406221.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           QCD-32g58]
 gi|123363602|sp|Q18BI4|PNP_CLOD6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|115250354|emb|CAJ68176.1| Polyribonucleotide nucleotidyltransferase [Clostridium difficile]
 gi|260209089|emb|CBA62243.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile
           CD196]
 gi|260212540|emb|CBE03500.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile
           R20291]
          Length = 703

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 87/245 (35%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPM--WIRNTKH 56
           +R   R+  ++R I     +   A GS +   G T +L  ATL     V     +   ++
Sbjct: 316 VRPDNRKLEEIRPIWCETGMIPRAHGSAIFTRGQTQVLNVATLGALGDVQKLDGLDEEEN 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         I +  
Sbjct: 376 KRYMHHYNFPAYSVGEARPSRGPGRREIGHG----ALAERALLPVIPSQEEFPYAIRLVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ ++G T  A++ G+ ++L D    ++D      +  +      A+         + D
Sbjct: 432 EVLSSNGSTSQASVCGSTLSLLDAGVPIKDMVAGIAMGLIKHDGKVAV---------LSD 482

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T+ G I  +Q   +     ++     L  AK+    ++   + 
Sbjct: 483 IQGMEDHLGDMDFKVAGTEYG-ITAIQMDIKIDGIDKEILQRALKQAKEGRIHILGEMRK 541

Query: 237 VISNE 241
            IS  
Sbjct: 542 TISQP 546



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 83/226 (36%), Gaps = 27/226 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKHGWITAEYGML 66
           RE+S+      + A GSC+V++ D+ ++     +A   + +  +  +  +       G +
Sbjct: 14  RELSVEIGKICEMASGSCIVRYSDSMVMVNTTKSAKPRDGIDFFPLSVDYEEKLYSVGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R +R +         Q++     +  D    
Sbjct: 74  P---GGFLKRE---GKPSEKAILTSRLIDRPIRPLFPKGFRNDVQVVATVLSVDQDCTPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +AL                     G   ++  G++ G  +V+ +  +     
Sbjct: 128 IVAMIGSSIALS-------------ISDIPFNGPTGSVCVGLVDGAFVVNPNAEQREKSS 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    I+ V+  A+      +     +  A   I  +++
Sbjct: 175 MHLVVSGTKEA-IMMVEAGADEVP--DEVMLDAILFAHQEIKKIVE 217


>gi|255655329|ref|ZP_05400738.1| polynucleotide phosphorylase/polyadenylase [Clostridium difficile
           QCD-23m63]
 gi|296451314|ref|ZP_06893054.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile
           NAP08]
 gi|296880334|ref|ZP_06904297.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile
           NAP07]
 gi|296259920|gb|EFH06775.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile
           NAP08]
 gi|296428575|gb|EFH14459.1| polyribonucleotide nucleotidyltransferase [Clostridium difficile
           NAP07]
          Length = 703

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 87/245 (35%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPM--WIRNTKH 56
           +R   R+  ++R I     +   A GS +   G T +L  ATL     V     +   ++
Sbjct: 316 VRPDNRKLEEIRPIWCETGMIPRAHGSAIFTRGQTQVLNVATLGALGDVQKLDGLDEEEN 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         I +  
Sbjct: 376 KRYMHHYNFPAYSVGEARPSRGPGRREIGHG----ALAERALLPVIPSQEEFPYAIRLVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ ++G T  A++ G+ ++L D    ++D      +  +      A+         + D
Sbjct: 432 EVLSSNGSTSQASVCGSTLSLLDAGVPIKDMVAGIAMGLIKHDGKVAV---------LSD 482

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T+ G I  +Q   +     ++     L  AK+    ++   + 
Sbjct: 483 IQGMEDHLGDMDFKVAGTEYG-ITAIQMDIKIDGIDKEILQRALKQAKEGRIHILGEMRK 541

Query: 237 VISNE 241
            IS  
Sbjct: 542 TISQP 546



 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 83/226 (36%), Gaps = 27/226 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKHGWITAEYGML 66
           RE+S+      + A GSC+V++ D+ ++     +A   + +  +  +  +       G +
Sbjct: 14  RELSVEIGKICEMASGSCIVRYSDSMVMVNTTKSAKPRDGIDFFPLSVDYEEKLYSVGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R +R +         Q++     +  D    
Sbjct: 74  P---GGFLKRE---GKPSEKAILTSRLIDRPIRPLFPKGFRNDVQVVATVLSVDQDCTPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +AL                     G   ++  G++ G  +V+ +  +     
Sbjct: 128 IVAMIGSSIALS-------------ISDIPFNGPTGSVCIGLVDGAFVVNPNAEQREKSS 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    I+ V+  A+      +     +  A   I  +++
Sbjct: 175 MHLVVSGTKEA-IMMVEAGADEVP--DEVMLDAILFAHQEIKKIVE 217


>gi|75763848|ref|ZP_00743497.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74488666|gb|EAO52233.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 525

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHL--LTT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T    + T  A  + ++   +   + 
Sbjct: 128 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQAXSICTLGALGDVQILDGLGVEES 187

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 188 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 243

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 244 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKSGEHYT 290

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++ 
Sbjct: 291 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKIGRVHILN 349

Query: 233 LQKDVISNE 241
               VI+  
Sbjct: 350 HMLSVIAEP 358


>gi|325276169|ref|ZP_08141974.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. TJI-51]
 gi|324098706|gb|EGB96747.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. TJI-51]
          Length = 701

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 95/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R++++++  + +    I +  +
Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPAADVFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    M+       +  V +G   A+         + D+
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  A +   +++     V
Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQV 541

Query: 238 ISN 240
           I  
Sbjct: 542 IGQ 544



 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 77/231 (33%), Gaps = 31/231 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGD--THLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66
           ++L    +++ A G+ LV   +  T +L T    ++       +  +  +   T   G +
Sbjct: 15  VTLETGRIARQATGAVLVTVDNDVT-VLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +     R+I R +R +     +   Q++             
Sbjct: 74  P---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185
            AA+ G   AL                    +G + A           +++  Y + +  
Sbjct: 128 IAAMIGTSAALAISGI-------------PFEGPIGAARVAFHESTGYLLNPTYEQLAAS 174

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            +D     T    ++     +E    ++D     +  A D    +I+  K+
Sbjct: 175 SLDMVVAGTSDAVLMV---ESEAQELTEDQMLGAVLFAHDEFQAVIQAVKE 222


>gi|148549775|ref|YP_001269877.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida F1]
 gi|187611272|sp|A5W983|PNP_PSEP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148513833|gb|ABQ80693.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida F1]
 gi|313500616|gb|ADR61982.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida
           BIRD-1]
          Length = 701

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 95/243 (39%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R++++++  + +    I +  +
Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPAADVFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    M+       +  V +G   A+         + D+
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  A +   +++     V
Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQV 541

Query: 238 ISN 240
           I  
Sbjct: 542 IGQ 544



 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 77/231 (33%), Gaps = 31/231 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGD--THLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66
           ++L    +++ A G+ LV   +  T +L T    ++       +  +  +   T   G +
Sbjct: 15  VTLETGRIARQATGAVLVTVDNDVT-VLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +     R+I R +R +     +   Q++             
Sbjct: 74  P---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185
            AA+ G   AL                    +G + A           +++  Y + +  
Sbjct: 128 IAAMIGTSAALAISGI-------------PFEGPIGAARVAFHESTGYLLNPTYEQLAAS 174

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            +D     T    ++     +E    ++D     +  A D    +I+  K+
Sbjct: 175 SLDMVVAGTSDAVLMV---ESEAQELTEDQMLGAVLFAHDEFQAVIQAVKE 222


>gi|241761092|ref|ZP_04759181.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374711|gb|EER64172.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 748

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 92/247 (37%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R I           GS L   G+T  L + TL     E++   +    + 
Sbjct: 313 RIDGRDLKTVRPIRSQVGFLPRTHGSALFTRGETQALVSTTLGTADAEQMIDGLTGLHYE 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G      ++  RAL  V+   A     I +  D
Sbjct: 373 RFMLHYNFPPYSVGEVGRFGAPGRREIGHG----KLAWRALHPVLPSKADFPYTIRVLSD 428

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A + G  +AL D                 L   V+ I+ G++    G+ I
Sbjct: 429 ITESNGSSSMATVCGGCLALMDAGV-------------PLTRPVSGIAMGLILEKDGFAI 475

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   + A  +++     L  AK   A ++  
Sbjct: 476 LSDIMGDEDHLGDMDFKVAGTEKG-ITSLQMDIKVAGITEEIMQKALEQAKGGRAHILGE 534

Query: 234 QKDVISN 240
               +  
Sbjct: 535 MSKALGE 541



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 80/226 (35%), Gaps = 27/226 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
           +++L    V++ A+G+ +   G+T +L   T    ++E    +     +    +  G +P
Sbjct: 15  KLTLETGQVARQADGAVIATLGETVVLCAVTAAKTVKEGQDFFPLTVHYQEKYSAAGRIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE  +     R   I R+I R +R +          +I    V+  DG    
Sbjct: 75  ---GGFFKRERGA---TERETLISRLIDRPIRPLFPEGFYNETLVIA--QVMSYDGENE- 125

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                      D L  +   +          G + A   G   G  I++    +    D+
Sbjct: 126 ----------PDILAMIAASAALALSGVPFLGPIGAARVGYQDGEFILNPTLEQLEKSDL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           D     T    ++ V+  +E     ++     ++ A + +  +IK 
Sbjct: 176 DLVVGATRDA-VMMVE--SEANELPEEVMLNAVSFAHESLQPVIKA 218


>gi|224438200|ref|ZP_03659135.1| polynucleotide phosphorylase/polyadenylase [Helicobacter cinaedi
           CCUG 18818]
 gi|313144645|ref|ZP_07806838.1| polynucleotide phosphorylase/polyadenylase [Helicobacter cinaedi
           CCUG 18818]
 gi|313129676|gb|EFR47293.1| polynucleotide phosphorylase/polyadenylase [Helicobacter cinaedi
           CCUG 18818]
          Length = 704

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 91/243 (37%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW------IRNT 54
           +R  GR    +R IS+   +  +A GS L   G T  L +ATL  +           +N 
Sbjct: 320 IRADGRGLKDIRPISIETNILPFAHGSVLFTRGQTQALVSATLGSENDAQSYEMLGSKNA 379

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y     S G      +V  R+ G       +  RAL S +       R I +
Sbjct: 380 LKRRFLFHYNFPGFSVGEASMIGSVGRRELGHG----NLARRALESSLTSQ---DRTIRL 432

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++++++G +  A++ G  +AL  C   ++       +  V +G   AI         +
Sbjct: 433 VSEILESNGSSSMASVCGGSLALCACGVQVDSLIAGVAMGLVTQGEKYAI---------L 483

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED   D+D        G I  +Q   +    S++     L  AK+    ++ + 
Sbjct: 484 TDISGLEDHDGDMDFKVAGGYKG-ISAMQMDIKLGGISKEILEESLLQAKEAREQILGIM 542

Query: 235 KDV 237
           ++ 
Sbjct: 543 EEA 545



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 72/225 (32%), Gaps = 26/225 (11%)

Query: 15  SLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST--- 70
           S T     K A GS L + G + LL +   EE       +     ++ +Y     ++   
Sbjct: 14  SYTFNYMAKAANGSVLYQNGGSVLLASVCAEE---NNKYDDDFLPLSVQYIEKAYASNKF 70

Query: 71  -GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
               VKRE   G+         R+I R LR +          I+I   V+  DG      
Sbjct: 71  PPGFVKRE---GKPSEFEILTSRLIDRTLRPLFPKGYKHITSIVI--WVLSYDG------ 119

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
                              +   L  +    V  +  G   G  +++    + S  ++D 
Sbjct: 120 -KSDLQLNALNAASAALYVSNLPLESLKDNAVCGVRIGRKNGAFVLNPTMEQMSESELDL 178

Query: 190 NFVMTDSGHIVEVQG---SAERAT--FSQDHFFAMLNLAKDRIAD 229
            FV      ++ ++     +E+     S+      L  AK  I  
Sbjct: 179 -FVSGRGDELLMIEMKSIRSEKGANELSERDMILALESAKSYIDR 222


>gi|56551445|ref|YP_162284.1| polynucleotide phosphorylase/polyadenylase [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|260752942|ref|YP_003225835.1| polynucleotide phosphorylase/polyadenylase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|81355362|sp|Q5NQ32|PNP_ZYMMO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56543019|gb|AAV89173.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|258552305|gb|ACV75251.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 748

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 92/247 (37%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R I           GS L   G+T  L + TL     E++   +    + 
Sbjct: 313 RIDGRDLKTVRPIRSQVGFLPRTHGSALFTRGETQALVSTTLGTADAEQMIDGLTGLHYE 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G      ++  RAL  V+   A     I +  D
Sbjct: 373 RFMLHYNFPPYSVGEVGRFGAPGRREIGHG----KLAWRALHPVLPSKADFPYTIRVLSD 428

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A + G  +AL D                 L   V+ I+ G++    G+ I
Sbjct: 429 ITESNGSSSMATVCGGCLALMDAGV-------------PLTRPVSGIAMGLILEKDGFAI 475

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   + A  +++     L  AK   A ++  
Sbjct: 476 LSDIMGDEDHLGDMDFKVAGTEKG-ITSLQMDIKVAGITEEIMQKALEQAKGGRAHILGE 534

Query: 234 QKDVISN 240
               +  
Sbjct: 535 MSKALGE 541



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 80/226 (35%), Gaps = 27/226 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
           +++L    V++ A+G+ +   G+T +L   T    ++E    +     +    +  G +P
Sbjct: 15  KLTLETGQVARQADGAVIATLGETVVLCAVTAAKTVKEGQDFFPLTVHYQEKYSAAGRIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE  +     R   I R+I R +R +          +I    V+  DG    
Sbjct: 75  ---GGFFKRERGA---TERETLISRLIDRPIRPLFPEGFYNETLVIA--QVMSYDGENE- 125

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                      D L  +   +          G + A   G   G  I++    +    D+
Sbjct: 126 ----------PDILAMIAASAALALSGVPFLGPIGAARVGYQDGEFILNPTLEQLEKSDL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           D     T    ++ V+  +E     ++     ++ A + +  +IK 
Sbjct: 176 DLVVGATRDA-VMMVE--SEANELPEEVMLNAVSFAHESLQPVIKA 218


>gi|254994938|ref|ZP_05277128.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale
           str. Mississippi]
 gi|255004198|ref|ZP_05278999.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale
           str. Virginia]
          Length = 805

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 88/243 (36%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-TATL---EEKVPMWIRNTKHG 57
           R+ GR  +Q+R I +   +   + GS L   GDT  L  TA     +E+V       +  
Sbjct: 320 RVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVITALGTPQDEQVVDGFDGDRRE 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     + G      A     G R     ++  RA+  V+   A     I +  +
Sbjct: 380 RFLLHYNFPSYAVGE----AAALRPPGRREIGHGKLAWRAIHPVLPTKADFPYTIRVVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + ++DG +  A + GA +AL D    ++       +  + +G   A+         + D+
Sbjct: 436 ITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDRYAV---------LSDI 486

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   +      D     L  AKD    +I     V
Sbjct: 487 IGDEDYLGDMDFKVAGTKDG-ITALQMDMKIRGIGFDIIEKSLQQAKDGRLFIIGKMDKV 545

Query: 238 ISN 240
           I  
Sbjct: 546 IKE 548



 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 72/191 (37%), Gaps = 25/191 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R + +    +++ A+G+ +V +G T +L+T      +E V       +    +   G +P
Sbjct: 14  RLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKSKEPVDFLPLTVQFLAKSYAIGRIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   G+   R   I R++ R++R +          I+I C+++  D     
Sbjct: 74  ---GGFFKRE---GKPSDRETLISRLVDRSIRPLFPTGFCDE--IVIVCNLLSYD----- 120

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--IVDLDYGEDSTI 185
                  V+  + +  +   +            +A    G +      I++    E +  
Sbjct: 121 ------QVSPPETVALIGAAAALAISGIPFPTPIAGAKIGYIREEERYILNPSAEELARS 174

Query: 186 DVDANFVMTDS 196
           ++D  +  T S
Sbjct: 175 ELDMFYSGTKS 185


>gi|326477645|gb|EGE01655.1| exosome complex endonuclease 1/ribosomal RNA processing protein
           [Trichophyton equinum CBS 127.97]
          Length = 302

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 71/208 (34%), Gaps = 13/208 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWI 59
           +RL GR+ N++R +      +  + GS  +  G+T +L T     +             I
Sbjct: 14  LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGR--SQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                +   +  +R K+       G R  + E+   +  A +  +         I +   
Sbjct: 74  NVVVNLAGFANVDRKKKSTTGSGGGDRQATTELANSLRDAFQPHIHAHLYPRSTISVHVS 133

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC--GMLCG---- 171
           V+ +DG    A +    +AL D    M        +    +    A++     + G    
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGRASSPAVTAESAQIGGINES 193

Query: 172 -YPIVDLDYGED---STIDVDANFVMTD 195
             P++D+   E+     + V     M D
Sbjct: 194 LDPLLDISAPEEVELPYMTVANTNPMPD 221


>gi|148263963|ref|YP_001230669.1| polynucleotide phosphorylase/polyadenylase [Geobacter
           uraniireducens Rf4]
 gi|187610269|sp|A5GF91|PNP_GEOUR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146397463|gb|ABQ26096.1| Polyribonucleotide nucleotidyltransferase [Geobacter uraniireducens
           Rf4]
          Length = 696

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R+I+    +   A GS L   G+T  L  ATL   +     ++  G    
Sbjct: 312 RIDGRDTKTIRQITTEVSLLPRAHGSALFTRGETQSLVAATLGTSIDEQRIDSLFGESKK 371

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R     R+ G       +  RAL  V+         I I  D
Sbjct: 372 RFLLHYNFPPFSVGETSFRLGPGRREIGHGM----LAERALARVLPKHDDFPYTIRIVSD 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           +++++G +  A++ G  +++ D                 +K  VA I+ G++  G     
Sbjct: 428 ILESNGSSSMASVCGGSMSMMDAGI-------------PIKAPVAGIAMGLIKEGEDFAI 474

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A + 
Sbjct: 475 LSDILGDEDHLGDMDFKVAGTAEG-VTALQMDIKIGGVTREIMGIALKQALEG 526



 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 83/230 (36%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R I++      K A G+ +V  GDT +L TA    T +E    +     +       G +
Sbjct: 12  RTITIETGKMAKQASGAVVVSSGDTMVLVTAVATKTAKEGQDFFPLTVNYQEKAYAGGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KREA   R         R+I R +R +   + L   QI+        D    
Sbjct: 72  P---GGFFKREA---RPSDNETLTCRLIDRPIRPLFPENFLNDTQIMATVVSADKDNDPG 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             ++ GA  AL                    +G +A +  G + G  I +    E    D
Sbjct: 126 ILSMVGASAAL-------------MVSDIPFQGPIAGVKVGRVDGRFIANPTADEMEKSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           ++   V      ++ V+GSA  A  S++     +      I  L+  Q++
Sbjct: 173 IEI-VVAASKDAVIMVEGSA--AEVSEEDMLEAIFFGHAAIQPLLAAQEE 219


>gi|332242319|ref|XP_003270334.1| PREDICTED: exosome complex exonuclease RRP43-like [Nomascus
           leucogenys]
          Length = 276

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 88/257 (34%), Gaps = 25/257 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P        G+I  
Sbjct: 23  RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-TDAPDKGYIVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115
              + P  +         SG  G  +Q   + I   +    ++    L    G    ++ 
Sbjct: 82  NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLAWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
           CD+  +  DG    A       AL +             + + + K +    ++ H  A 
Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVAT 196

Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           S  +      IVD    E+         VM + G +  +      +  +       ++ A
Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255

Query: 224 KDRIADLIKLQKDVISN 240
             R  ++ KL  +VI +
Sbjct: 256 VTRHKEVKKLMDEVIKS 272


>gi|118579404|ref|YP_900654.1| polynucleotide phosphorylase/polyadenylase [Pelobacter propionicus
           DSM 2379]
 gi|187610304|sp|A1AMM6|PNP_PELPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|118502114|gb|ABK98596.1| Polyribonucleotide nucleotidyltransferase [Pelobacter propionicus
           DSM 2379]
          Length = 706

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 89/247 (36%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR    +R I+    +     GS L   G+T  L   TL         ++ +G   
Sbjct: 311 VRIDGRDTVTIRPIATEAGLLPRTHGSALFTRGETQALVVTTLGTSSDEQRMDSLYGEYR 370

Query: 61  ----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G    R     R+ G       +  RAL +++         I I  
Sbjct: 371 KRFLLHYNFPPFSVGETSFRLGPGRREIGHGM----LAERALSAILPKHDDFPYTIRIVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIV 175
           + ++++G +  AA+ G  ++L D                 +   VA I+ G++  G  + 
Sbjct: 427 ETLESNGSSSMAAVCGGCMSLMDAGV-------------PISAPVAGIAMGLIKEGEKVA 473

Query: 176 ---DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
              D+   ED   D+D     +  G I  +Q   +    +++     L  A++    ++ 
Sbjct: 474 ILSDILGDEDHLGDMDFKVAGSSDG-ITALQMDIKIGGVTREIMQKALAQAREGRLHILG 532

Query: 233 LQKDVIS 239
              + + 
Sbjct: 533 KMAETLG 539



 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 83/228 (36%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++++     K A G+ +VK GDT +L TA  +++            +T  Y     + G 
Sbjct: 14  VTISTGKMAKQANGAVVVKSGDTMVLVTAVAQKEA---KEGQDFFPLTVNYTEKAYAGGK 70

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +REA   R         R+I R +R +   + L   QII        D   R  
Sbjct: 71  IPGSFFRREA---RPSDPETLTCRLIDRPIRPLFPENFLNDTQIIATVVSADKDHDPRIL 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ GA  AL                    +G +A +  G + G  I +    E    D++
Sbjct: 128 SMLGASAAL-------------EVSDIPFQGPIAGVKVGRVDGRLICNPTADELELSDME 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              V      I+ V+G  E    S+D     +      +  +++ Q+ 
Sbjct: 175 I-VVAASRDAIIMVEG--EARFVSEDDMLDAIFFGHAAVQPVLEAQEK 219


>gi|292492790|ref|YP_003528229.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus halophilus
           Nc4]
 gi|291581385|gb|ADE15842.1| Polyribonucleotide nucleotidyltransferase [Nitrosococcus halophilus
           Nc4]
          Length = 711

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 91/246 (36%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I++   +   A GS L   G+T  L   TL  +        I   +  
Sbjct: 331 RIDGRDTKSVRPINIMTGLLPRAHGSALFTRGETQSLVATTLGTERDAQVIDAIEGERRE 390

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      A   R+ G      R+  R+L +VV         I +  +
Sbjct: 391 RFMLHYNFPPYCVGETGFVGAPKRREIGHG----RLAKRSLNAVVPDEESFPYVIRVVSE 446

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A + G  ++L D                 +   VA I+ G++        
Sbjct: 447 ITESNGSSSMATVCGTSLSLMDAGV-------------PITEPVAGIAMGLIKERDQFAV 493

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    +++     L+ A++    +++ 
Sbjct: 494 LSDILGDEDHLGDMDFKVAGTGKG-VTALQMDIKIDGITEEIMRTALSQAREGRLHILQK 552

Query: 234 QKDVIS 239
             +VIS
Sbjct: 553 MNEVIS 558



 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 80/237 (33%), Gaps = 42/237 (17%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + L    +++ A G+ +V +G+T +L TA     V   I       +T  Y     + 
Sbjct: 29  RSLVLETGCIARQATGAVVVHYGETAVLVTAVG---VKEAIEGRDFFPLTVNYQERTYAA 85

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--G 124
           G       KRE   GR   +     R+I R LR +         Q+I    VI +DG   
Sbjct: 86  GKIPGGFFKRE---GRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIAT--VISSDGEND 140

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++ GA  AL                       +AA   G + G  +++    +   
Sbjct: 141 PDIPSLIGASAALALSGI-------------PFTTPIAAARVGYIDGRYVLNPTLSQMEK 187

Query: 185 IDVDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232
             +D     T+   ++ V+  A             F      A++      I +L +
Sbjct: 188 SALDLVVAGTEKA-VLMVESEARELPEEIMLGSVIFGHQEMQAVI----QAIRELAE 239


>gi|122920909|pdb|2NN6|C Chain C, Structure Of The Human Rna Exosome Composed Of Rrp41,
           Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
          Length = 278

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 88/257 (34%), Gaps = 25/257 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P        G++  
Sbjct: 25  RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPS-TDAPDKGYVVP 83

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL---GSRQIII-D 115
              + P  +         SG  G  +Q   + I   +    ++    L     + + +  
Sbjct: 84  NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLY 138

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
           CD+  +  DG    A       AL +             + + + K +    ++ H  A 
Sbjct: 139 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVAT 198

Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           S  +      IVD    E+         VM + G +  +      +  +       ++ A
Sbjct: 199 SFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 257

Query: 224 KDRIADLIKLQKDVISN 240
             R  ++ KL  +VI +
Sbjct: 258 VTRHKEVKKLMDEVIKS 274


>gi|33240756|ref|NP_875698.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|81664238|sp|Q7VAZ5|PNP_PROMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33238284|gb|AAQ00351.1| Ribonuclease PH [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 722

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 97/238 (40%), Gaps = 36/238 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66
           REI LT    +  A GS L++ GDT +L TAT  +             ++ +Y       
Sbjct: 13  REIRLTTGRYAPQAGGSVLIECGDTAVLVTATQGQG----REGADFLPLSCDYEERLYAA 68

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----AD 122
            R  G+ ++RE   GR   R+  I R+I R LR +         Q++  C  +     AD
Sbjct: 69  GRIPGSFMRRE---GRPPERATLISRLIDRPLRPLFPNWMRDDIQVVATCLSLDERVPAD 125

Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
                 A+TG+ +A                      G +AA+  G+L    +++  + E 
Sbjct: 126 ----ILAVTGSSMATLLAGI-------------PFYGPMAAVRVGLLGDDFVLNPSFREI 168

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
              D+D     T  G +V V+  + +   ++      ++   + + +LIK Q+ ++ +
Sbjct: 169 ERGDLDLVVAGTPDG-VVMVEAGSNQ--LTEQDVIEAIDFGYEAVNELIKAQESILKD 223



 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 90/250 (36%), Gaps = 29/250 (11%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----TK 55
           R+ GR  +++REIS    +  K   GS L + G T +L+TATL         +       
Sbjct: 323 RVDGRALDEVREISAEAGILPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPSPD 382

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I   Y   P S G          R+ G       +  RA+  V+         + + 
Sbjct: 383 KTYIH-HYNFPPYSVGETRPMRTPGRREVGHG----ALAERAIIPVLPPKESFPYVLRVV 437

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V+ ++G T   ++ G+ +AL D                 LK  V+  + G++      
Sbjct: 438 SEVLSSNGSTSMGSVCGSTIALLDAGV-------------PLKAPVSGAAMGLIKEGEEV 484

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T+ G I  +Q   +            +N AK     ++
Sbjct: 485 RILTDIQGIEDFLGDMDFKVAGTEKG-ITALQMDMKMTGLPIKIIGEAINQAKPARTHIL 543

Query: 232 KLQKDVISNE 241
           +     I   
Sbjct: 544 EKMVQAIDKP 553


>gi|257094905|ref|YP_003168546.1| polynucleotide phosphorylase/polyadenylase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047429|gb|ACV36617.1| Polyribonucleotide nucleotidyltransferase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 706

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 95/236 (40%), Gaps = 20/236 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I++   V   A GS L   G+T  +  ATL       I +   G    
Sbjct: 315 RIDGRDTRTVRPIAIRSGVLPRAHGSSLFTRGETQAIVVATLGTGRDEQIIDALSGEYRE 374

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P +TG   +      R+ G      R+  RAL +V+      S  I +  +
Sbjct: 375 RFMLHYNFPPYATGECGRVGTPKRREVGHG----RLAKRALLAVLPAPEDFSYTIRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    ++       +  + +G+  A+         + D+
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPLKAHVAGIAMGLIKEGNRVAV---------LTDI 481

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
              ED   D+D     T++G +  +Q   +    +++     + LA+   A L  L
Sbjct: 482 LGDEDHLGDMDFKVAGTEAG-VTALQMDIKIQGITKEIMQ--VALAQAGEARLHIL 534



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 82/234 (35%), Gaps = 28/234 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++++    +++ A G+ +V   DT +L +       +     +     +   T   G +P
Sbjct: 15  QVTMETGEIARQAGGAVMVSIDDTVVLVSVVGNKTAKPGQDFFPLTVDYIEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR   +     R+I R LR +         Q++     +  +     
Sbjct: 75  ---GGFFKRE---GRPSEKETLTSRLIDRPLRPLFPDGFYHEVQVVATVMSLNPEIDPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ GA  A+                     G + A   G + G  +V+    +  +  +
Sbjct: 129 AALIGASAAMTISGI-------------PFDGPIGAARVGYVDGQYVVNPTATQLKSSLL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D     T +  ++     +E    S++     +     ++  +I    + +++E
Sbjct: 176 DLVVAGTQAAVLMV---ESEAKELSEEVMLGAVVFGHQQMQVVIDAINE-LADE 225


>gi|242047540|ref|XP_002461516.1| hypothetical protein SORBIDRAFT_02g003900 [Sorghum bicolor]
 gi|241924893|gb|EER98037.1| hypothetical protein SORBIDRAFT_02g003900 [Sorghum bicolor]
          Length = 877

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 91/245 (37%), Gaps = 33/245 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKH 56
           R  GR   ++R I+    +   A GS L   G+T  L   TL      +++   +     
Sbjct: 424 RSDGRSPWELRPINSQCGLLPRAHGSALFTRGETQSLAVVTLGGYQMAQRIDNLVDTEDS 483

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P   G   +  A S R+ G       +  RAL  ++         I ++ 
Sbjct: 484 KSFYLQYSFPPSCVGEVGRIGAPSRREIGHGM----LAERALEPILPPEEDFPYTIRVES 539

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------- 169
            + +++G +  A++ G  +AL D                 +K  VA I+ G++       
Sbjct: 540 TITESNGSSSMASVCGGCLALQDAGV-------------PIKFPVAGIAMGLVLDTQEFG 586

Query: 170 -CGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             G P++  D+   ED++ D+D      +SG I   Q   +    +       L  A+D 
Sbjct: 587 GDGSPLILSDITGAEDASGDMDLKIAGNESG-ISAFQMDIKVVGITLPVMEQALFQARDG 645

Query: 227 IADLI 231
              ++
Sbjct: 646 RQHIL 650



 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 80/229 (34%), Gaps = 31/229 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           REI +      + A  S +V  G+T L  +     T  +    +  +  +          
Sbjct: 83  REILVETGHIGRQASASVMVTDGETILYCSVCLADTPNDPADFFPLSVHYQE---RLSAA 139

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--G 124
            R++G   KRE   G+       + R+I R LR  +        QI+    V   DG   
Sbjct: 140 GRTSGGFFKRE---GKTKDHEVLVCRLIDRPLRPTMPKGFYYETQIL--SWVFSYDGIHS 194

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               AIT A +A+                    K  +A +  G++    +V+    +   
Sbjct: 195 PDCLAITAAGIAVA-------------LSEIPNKQTIAGVRIGLIDDQFVVNPTTEQMEN 241

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
            ++D     TDS  I+ ++G       +++     +   +  I ++ K 
Sbjct: 242 SELDLMMAGTDSA-ILMIEG--YCDFLTEEKLLEAVEAGQVAIREICKA 287


>gi|167644014|ref|YP_001681677.1| polynucleotide phosphorylase/polyadenylase [Caulobacter sp. K31]
 gi|189037303|sp|B0T175|PNP_CAUSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|167346444|gb|ABZ69179.1| Polyribonucleotide nucleotidyltransferase [Caulobacter sp. K31]
          Length = 716

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 90/246 (36%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR  + +R I     +     GS L   G+T  +  ATL         +   G   
Sbjct: 316 IRIDGRTVDTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYK 375

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R     ++  RALR ++         I +  
Sbjct: 376 EAFLLHYNFPPFSVGETGR----MGSPGRREIGHGKLAWRALRPMLPAKEDFPYTIRLVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A + GA +A+ D                 L   V+ I+ G++    G+ 
Sbjct: 432 EITESNGSSSMATVCGASLAMMDAGV-------------PLIRPVSGIAMGLILEKDGFA 478

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T  G +  +Q   + A  +++     L  AK     ++ 
Sbjct: 479 VLSDILGDEDHLGDMDFKVAGTSQG-LTSLQMDIKIAGITEEIMKQALAQAKGGREHILG 537

Query: 233 LQKDVI 238
                +
Sbjct: 538 EMNKAM 543



 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 84/249 (33%), Gaps = 43/249 (17%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPRST 70
           L    +++ A+G+ L   G+T +L TA      +     +     +   T   G +P   
Sbjct: 18  LETGRIARQADGAVLATMGETVVLATAVFAKKAKPGQDFFPLTVNYIEKTYAAGKIP--- 74

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTRTA 128
           G   KRE   GR   +   + R+I R +R +         Q++  C V+Q D        
Sbjct: 75  GGFFKRE---GRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVV--CTVLQHDLENDPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+  A  AL                     G +     G +    I++    E     +D
Sbjct: 130 AMCAASAALVISGA-------------PFMGPIGGCRVGYVNDEYILNPTLDELKESKMD 176

Query: 189 ANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAM----LNLAKDRIADLIKLQ-- 234
                T    ++   E+Q  +E       +F+     A+    + LA+    +    Q  
Sbjct: 177 LVVAGTADAVMMVESEIQELSEEIVLGGVSFAHKSMQAVINGIIELAEHAAKEPFDFQPE 236

Query: 235 -KDVISNEV 242
             D +  EV
Sbjct: 237 DTDALKAEV 245


>gi|301791884|ref|XP_002930910.1| PREDICTED: exosome complex exonuclease RRP43-like [Ailuropoda
           melanoleuca]
          Length = 276

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 87/257 (33%), Gaps = 25/257 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P        G++  
Sbjct: 23  RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEFAAPP-TDTPDKGYVVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115
              + P  +         SG  G  +Q   + I   +    ++    L    G    ++ 
Sbjct: 82  NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLSWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
           CD+  +  DG    A       AL +             + +   K +    ++ H  A 
Sbjct: 137 CDIICLDYDGNILDACTFALLAALKNVQLPEVTINEETGLAEVHLKKKSYLNIRTHPVAT 196

Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           S  +      IVD    E+         VM + G +  +      +  +       ++ A
Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255

Query: 224 KDRIADLIKLQKDVISN 240
             R  ++ KL  +VI +
Sbjct: 256 VTRHKEVKKLMDEVIKS 272


>gi|300113661|ref|YP_003760236.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus watsonii
           C-113]
 gi|299539598|gb|ADJ27915.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus watsonii
           C-113]
          Length = 695

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 92/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R IS+T  +     GS L   G+T  L   TL  +        I   +  
Sbjct: 315 RIDGRDTTAIRPISITTGLLPRTHGSALFTRGETQSLVATTLGTERDAQVIDAIEGERRE 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R+L +VV         I +  +
Sbjct: 375 RFMLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRSLNAVVPDEESFPYVIRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A + G  ++L D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMATVCGTSLSLMDAGV-------------PIKAPVAGIAMGLIKEADRFAV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G +  +Q   +    +++     L  A++    +++ 
Sbjct: 478 LSDILGDEDHLGDMDFKVAGTEKG-VTALQMDIKIDGITEEIMRTALTQAREGRFHILQK 536

Query: 234 QKDVISNE 241
             ++IS  
Sbjct: 537 MNEIISTP 544



 Score = 79.0 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 36/232 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A G+ +V++G+T +L T        E    +     +   T   G +
Sbjct: 13  RPLILETGCIARQASGAVVVRYGETVVLVTVVGMKEAVEGRDFFPLTVNYQERTYAAGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +     R+I R LR +   + +   Q+I       ++    
Sbjct: 73  P---GGFFKRE---GRPTEKETLTSRLIDRPLRPLFPKNFVNEVQVIATVISSDSENDPD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             ++ GA  AL                       +AA   G + G  +++    +     
Sbjct: 127 IPSLIGASAALTLSGI-------------PFATPIAAARVGYIDGQYVLNPTLSQMEESA 173

Query: 187 VDANFVMTDSGHIV---EVQGSAER-----ATFSQDHFFAML----NLAKDR 226
           +D     T+   ++   E Q   E        F       ++     LA++ 
Sbjct: 174 LDLVVAGTEKAVLMVESEAQELPEEIMLGSVMFGHQEMQEVIQTIRELAEEA 225


>gi|295132795|ref|YP_003583471.1| polynucleotide phosphorylase/polyadenylase [Zunongwangia profunda
           SM-A87]
 gi|294980810|gb|ADF51275.1| polynucleotide phosphorylase/polyadenylase [Zunongwangia profunda
           SM-A87]
          Length = 731

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 88/249 (35%), Gaps = 28/249 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNT---KH 56
           +RL GR+  ++R I           GS +   G+T  L T T    +    +        
Sbjct: 317 IRLDGRKTTEIRPIWCEVDYLPSPHGSSIFTRGETQALATVTLGTSREANQVDLPTQQGE 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG        S R+ G       +  RAL+ ++         + +  
Sbjct: 377 ENFYLHYNFPPFSTGEAYPIRGTSRREIGHG----NLAQRALKGMIPSD--CPYTVRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY--- 172
           +V++++G +  A +    +AL D    +             K  V+ I+ G++  G    
Sbjct: 431 EVLESNGSSSMATVCAGTMALMDAGIQL-------------KKPVSGIAMGLISDGEDFA 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I   Q   +    S +     L  A+D    +++
Sbjct: 478 VLSDILGDEDHLGDMDFKVTGTADG-ITACQMDIKIKGLSYEILVKALKQARDGRLHILE 536

Query: 233 LQKDVISNE 241
              D I+  
Sbjct: 537 KLTDTIAEP 545



 Score = 85.5 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 80/227 (35%), Gaps = 26/227 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           REIS+      K A GS +V+ GD  LL T         +  +     +    A  G  P
Sbjct: 16  REISIETGKLAKQAHGSVVVRMGDAMLLCTVVSSYTPTTMDFFPLTLDYREKFAAAGRFP 75

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KREA   R       + R++ R LR +         Q++I   ++  D     
Sbjct: 76  ---GGYFKREA---RPSSEEILVMRLVDRVLRPLFPKDYKFETQVMI--QLMSHD----- 122

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                    + D L  +   +         +  ++ +    + G  +++  + +    D+
Sbjct: 123 ------PEVMPDALAGLAASAAIQVSDIPFETPISEVRVARIDGELVINPSFEQLEKADL 176

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D   V   +  ++ V+G  E    S++     +  A + I    + Q
Sbjct: 177 DM-MVGASADSVMMVEG--EMDEISEEEMAEAIKFAHEAIKVQCEAQ 220


>gi|114765823|ref|ZP_01444916.1| polyribonucleotide nucleotidyltransferase [Pelagibaca bermudensis
           HTCC2601]
 gi|114541822|gb|EAU44859.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp.
           HTCC2601]
          Length = 463

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 95/248 (38%), Gaps = 27/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R I     V     GS L   G+T  L   TL       I +  HG   +
Sbjct: 68  RIDGRALDQVRPIQSETSVLPRTHGSSLFTRGETQALVVTTLGTGDDEQIIDALHGNFRS 127

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+         I +  +
Sbjct: 128 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRLVSE 183

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGY-- 172
           + +++G +  A++ G  +++ D                 LK  VA ++ G++    G   
Sbjct: 184 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLVLEDDGEYA 230

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T++G I  +Q   + A  + +     L  AKD    ++ 
Sbjct: 231 ILTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMKKALAQAKDGRMHILS 289

Query: 233 LQKDVISN 240
                +S 
Sbjct: 290 EMGKALSE 297


>gi|31415882|ref|NP_852480.1| exosome complex component RRP43 [Homo sapiens]
 gi|21759409|sp|Q96B26|EXOS8_HUMAN RecName: Full=Exosome complex component RRP43; AltName:
           Full=Exosome component 8; AltName: Full=Opa-interacting
           protein 2; Short=OIP-2; AltName: Full=Ribosomal
           RNA-processing protein 43; AltName: Full=p9
 gi|18088472|gb|AAH20773.1| Exosome component 8 [Homo sapiens]
 gi|123992916|gb|ABM84060.1| exosome component 8 [synthetic construct]
 gi|123999809|gb|ABM87413.1| exosome component 8 [synthetic construct]
 gi|208966244|dbj|BAG73136.1| exosome component 8 [synthetic construct]
          Length = 276

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 88/257 (34%), Gaps = 25/257 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P        G++  
Sbjct: 23  RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPS-TDAPDKGYVVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL---GSRQIII-D 115
              + P  +         SG  G  +Q   + I   +    ++    L     + + +  
Sbjct: 82  NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
           CD+  +  DG    A       AL +             + + + K +    ++ H  A 
Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVAT 196

Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           S  +      IVD    E+         VM + G +  +      +  +       ++ A
Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255

Query: 224 KDRIADLIKLQKDVISN 240
             R  ++ KL  +VI +
Sbjct: 256 VTRHKEVKKLMDEVIKS 272


>gi|325133728|gb|EGC56384.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M13399]
          Length = 706

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|319638374|ref|ZP_07993136.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa C102]
 gi|317400123|gb|EFV80782.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa C102]
          Length = 706

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 95/244 (38%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPEPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L  +  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    +++  K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILEQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|309378199|emb|CBX23171.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 706

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|296203741|ref|XP_002749024.1| PREDICTED: exosome complex exonuclease RRP43-like [Callithrix
           jacchus]
          Length = 276

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 88/257 (34%), Gaps = 25/257 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P        G++  
Sbjct: 23  RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-TDAPDKGYVVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115
              + P  +         SG  G  +Q   + I   +    ++    L    G    ++ 
Sbjct: 82  NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLAWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
           CD+  +  DG    A       AL +             + + + K +    ++ H  A 
Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINGETALAEVNLKKKSYLNIRTHPVAT 196

Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           S  +      IVD    E+         VM + G +  +      +  +       ++ A
Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255

Query: 224 KDRIADLIKLQKDVISN 240
             R  ++ KL  +VI +
Sbjct: 256 VTRHKEVKKLMDEVIKS 272


>gi|161869702|ref|YP_001598869.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
           053442]
 gi|189037311|sp|A9M3J0|PNP_NEIM0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|161595255|gb|ABX72915.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           053442]
          Length = 706

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|170747372|ref|YP_001753632.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           radiotolerans JCM 2831]
 gi|226702663|sp|B1LZQ1|PNP_METRJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|170653894|gb|ACB22949.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 739

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 90/241 (37%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     V   A GS L   G+T  L  ATL         +   G    
Sbjct: 316 RIDGRDVKTVRSILSEVGVLPRAHGSALFTRGETQALVVATLGTGEDEQFIDALEGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R V+  +      I +  +
Sbjct: 376 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPVLPPAHEFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L D    +        +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     TD G +  +Q   + A  +++     L  AKD  A ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTDEG-VTSLQMDIKIAGITEEIMKIALAQAKDGRAHILAEMAKA 541

Query: 238 I 238
           +
Sbjct: 542 L 542



 Score = 69.0 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 74/229 (32%), Gaps = 23/229 (10%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R++ L    V++ A+G+ +  +G+T +L T    ++            +T  Y     + 
Sbjct: 14  RKLVLETGKVARQADGAVIATYGETSVLATVVAAKEPKP---GIDFMPLTVNYQERAYAA 70

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G       KRE   GR   +   + R+I R +R +         Q+++       +    
Sbjct: 71  GRIPGGYFKRE---GRPSEKETLVSRLIDRPIRPLFIEGWRNDTQVVVTVLTHDLENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL              ++  +  G+              +DL         
Sbjct: 128 IVAMVAASAALTLSGVPFMGPIGGARVGYINGGYRLNPLVTETKEESSLDL-----VVAG 182

Query: 187 VDANFVM--TDSGHIVEVQGSAERATFSQDHFFAMLN----LAKDRIAD 229
                +M  +++  + E         F   HF  ++     LA+    +
Sbjct: 183 TQDAVLMVESEAKELSEDVMLG-AVMFGHKHFQPVIEAIIRLAEKAAKE 230


>gi|313668762|ref|YP_004049046.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica
           ST-640]
 gi|313006224|emb|CBN87686.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
           lactamica 020-06]
          Length = 706

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|88608486|ref|YP_505958.1| polynucleotide phosphorylase/polyadenylase [Neorickettsia sennetsu
           str. Miyayama]
 gi|123750038|sp|Q2GEY8|PNP_NEOSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|88600655|gb|ABD46123.1| polyribonucleotide nucleotidyltransferase [Neorickettsia sennetsu
           str. Miyayama]
          Length = 757

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 98/249 (39%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR   ++R IS+         GS L   G T  L  ATL    +E+V   I   + 
Sbjct: 317 IRPDGRSLTEIRPISIALDYLPGTHGSALFTRGGTQSLVVATLGSYQDEQVMDDIDGERR 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
             +   Y  LP + G      A   R+ G      R+  +A+++V+    +    + +  
Sbjct: 377 ESVLLHYNFLPYAVGEVGALRAPGRREIGHG----RLALKAVKAVLPGKEVFPYTLRLVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ ++DG +  A + G+ +AL D                 +  HVA I+ G++       
Sbjct: 433 EITESDGSSSMATVCGSSLALMDTGV-------------PITKHVAGIAMGLITDGVRSA 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G IV +Q   +    S       LN A      +++
Sbjct: 480 VLSDISGDEDMLGDMDFKVAGTRNG-IVALQMDMKVRGISIATIRDALNQALAGRLHILE 538

Query: 233 LQKDVISNE 241
             + VI+  
Sbjct: 539 KMEHVIAKP 547



 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 17/141 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70
           + +    V++ A G+  V +G T +L   TL++      + +    +      L +S   
Sbjct: 16  LHIKTGEVARQAAGAACVSYGGTVVLAVVTLQKDTAASKKTSDLSGLALVTNFLAKSYAL 75

Query: 71  ----GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG-- 124
                   KRE   G+   R     R++ RA+R +++ + +    + I C ++ A G   
Sbjct: 76  GRIPNGFFKRE---GKLSEREVLASRVVDRAVRPLIEENLVNE--VNIVCKLL-AHGNRK 129

Query: 125 --TRTAAITGAWVALHDCLQH 143
                 A+  A  AL      
Sbjct: 130 VLPEIPALIAASAALQLSGIP 150


>gi|164428624|ref|XP_964355.2| hypothetical protein NCU00812 [Neurospora crassa OR74A]
 gi|157072219|gb|EAA35119.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 257

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 81/251 (32%), Gaps = 38/251 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMW--------- 50
           +R+ GR+ N++R I    R    A+GS  ++ G T ++       E  P           
Sbjct: 13  LRVDGRRWNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVVNGPSEPGPRRGATSGGGGG 72

Query: 51  IRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110
              +K+  +     +   S+ +R +R    GR                   +        
Sbjct: 73  GGQSKNAEVAVNIVIAGFSSVDRKRR----GRGDN----------------LHTHLFPHS 112

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
            I I   V+  DG    A I  A +A  D    M D            G  +  +     
Sbjct: 113 TINISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTA-----GSTSTYAANDEG 167

Query: 171 GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
             P++D+++ E+  +       + DS  +  +   +            ML +  D    +
Sbjct: 168 ADPLLDMNHQEEQELPGLTVATLGDSDRVAVLVCESRVQV---SRLEGMLAVGVDGCKQV 224

Query: 231 IKLQKDVISNE 241
            ++   V+  +
Sbjct: 225 REILDRVVREK 235


>gi|91085763|ref|XP_974155.1| PREDICTED: similar to CG11337 CG11337-PA [Tribolium castaneum]
 gi|270009999|gb|EFA06447.1| hypothetical protein TcasGA2_TC009329 [Tribolium castaneum]
          Length = 747

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 85/248 (34%), Gaps = 17/248 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR  +Q+R I     + K   GS + + G T +  T TL+        + + M I  
Sbjct: 348 RCDGRDYDQLRNIECKVNLYKPLHGSAMFQRGQTQVFCTVTLDSHDSAMKLDPMAMLISG 407

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    +     G  G R      +  + L   +         I 
Sbjct: 408 VKEKNFFLHYEFPPFATKETGR----IGPIGRREIGHGALAEKGLTPSIPDDF--PFTIR 461

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A++ G  +AL D    +   +    +  + +      +        
Sbjct: 462 LTSEVLESNGSSSMASVCGGTLALMDAGVPIVAPAAGVAIGLITRYDDEKANITDY--RL 519

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + DL   ED   D+D     T  G I  +Q   +            +  A +    ++++
Sbjct: 520 LTDLLGIEDYMGDMDFKIAGTKKG-ITALQADIKIPGLPLKIVMESIQKATEAKQKILQI 578

Query: 234 QKDVISNE 241
             + I   
Sbjct: 579 MHECIDKP 586



 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 84/231 (36%), Gaps = 27/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + ++    ++ A+G  +   GDT ++ TA  + K       +    +  +Y     + 
Sbjct: 44  RSLKISTGQYARLADGCAVATLGDTSVMVTAVSKTKPSP----SNFLPLVVDYRQKSAAA 99

Query: 71  GNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
           G R+         G   +EI   R+I R+LR +         Q++  C+++  DG     
Sbjct: 100 G-RIPTNFFRRELGPSEKEILTSRLIDRSLRPLFPERFAYETQVV--CNMLAVDG----- 151

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
                 V   D +      +          G V A+  GM+    I++    E  +  ++
Sbjct: 152 ------VNNPDVVSINAASAALALSDIPWNGPVGAVRLGMIDNEVIINPTRKELQSSILN 205

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI----KLQK 235
                T    +V ++G+A      Q      + L    +  ++    KLQK
Sbjct: 206 LVLSATRKNLVVMLEGNANNIL--QQDLLKAVKLGTKEVQQIVASIEKLQK 254


>gi|269214445|ref|ZP_06158584.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica ATCC
           23970]
 gi|269209893|gb|EEZ76348.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica ATCC
           23970]
          Length = 707

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 377 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542

Query: 238 ISNE 241
           ++  
Sbjct: 543 VAGP 546



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 17  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 76  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 131 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 177

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 178 LVVAGTSKAVLM 189


>gi|225025578|ref|ZP_03714770.1| hypothetical protein EIKCOROL_02480 [Eikenella corrodens ATCC
           23834]
 gi|224941616|gb|EEG22825.1| hypothetical protein EIKCOROL_02480 [Eikenella corrodens ATCC
           23834]
          Length = 701

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLGTQRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL  V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGECGRMGAPKRREIGHG----RLAKRALLGVLPSPEEFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    +++  K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILEQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 83/234 (35%), Gaps = 28/234 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
           +++    +++ A G+  V  G+T +L   T  ++V      +     +   T   G +P 
Sbjct: 16  VTIETGEIARQAAGAVKVSMGETVVLVAVTANKEVKAGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFFHDIQIVATVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G L G  +++    + +   +D
Sbjct: 130 AMIGASAALV-------------LSGVPFAGPIGAARVGYLNGEYVLNPTKTQLAKSQLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                T    ++     +E     +D     +    + +  +I+   + +++ V
Sbjct: 177 LVVAGTAQAVLMV---ESEAQILPEDVMLGAVVYGHNEMQAVIRAINE-LADAV 226


>gi|66267273|gb|AAH95236.1| Exosome component 8 [Danio rerio]
          Length = 277

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 88/254 (34%), Gaps = 25/254 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  +L       A+GS LVK G+T ++     E  VP        G++  
Sbjct: 23  RPDGRELGEFRPTTLNINSISTADGSALVKIGNTTVICGIKAELAVPPSEA-QNKGYLVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQI----IID 115
              + P  +         +G  G ++Q   + I   + S  +++L  L   +     ++ 
Sbjct: 82  NVDLPPLCSS-----RFRAGPPGEQAQAASQFIADVIESSDLINLEELCIEKAKLCWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           CD+  +  DG    A IT    AL                 E    K +  ++ +  V +
Sbjct: 137 CDIMCLDYDGNLLDACITVLLAALKTAQLPEVTINKETDLAEVDIEKKRRLKINRHPVGS 196

Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
                     IVD    E+S        V  +   +  V       + S +     +N A
Sbjct: 197 SFAVFDDSIIIVDPTAEEESLSTALMTVVTDEEDRLCAVHKPG-GTSLSGEKLQHCINRA 255

Query: 224 KDRIADLIKLQKDV 237
             R  ++ KL   V
Sbjct: 256 ITRNKEIRKLLDKV 269


>gi|50838810|ref|NP_001002865.1| exosome complex exonuclease RRP43 [Danio rerio]
 gi|49618917|gb|AAT68043.1| Opa-interacting protein 2 [Danio rerio]
          Length = 277

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 88/254 (34%), Gaps = 25/254 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  +L       A+GS LVK G+T ++     E  VP        G++  
Sbjct: 23  RPDGRELGEFRPTTLNINSISTADGSALVKIGNTTVICGIKAELAVPPSEA-QNKGYLVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQI----IID 115
              + P  +         +G  G ++Q   + I   + S  +++L  L   +     ++ 
Sbjct: 82  NVDLPPLCSS-----RFRAGPPGEQAQAASQFIADVIESSDLINLEELCIEKAKLCWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           CD+  +  DG    A IT    AL                 E    K +  ++ +  V +
Sbjct: 137 CDIMCLDYDGNLLDACITVLLAALKTAQLPEVTINKETDLAEVDIEKKRRLKINRHPVGS 196

Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
                     IVD    E+S        V  +   +  V       + S +     +N A
Sbjct: 197 SFAVFDDSIIIVDPTAEEESLSTALMTVVTDEEDRLCAVHKPG-GTSLSGEKLQHCINRA 255

Query: 224 KDRIADLIKLQKDV 237
             R  ++ KL   V
Sbjct: 256 LTRNKEIRKLLDKV 269


>gi|296840915|ref|ZP_06863772.2| polyribonucleotide nucleotidyltransferase [Neisseria polysaccharea
           ATCC 43768]
 gi|296839560|gb|EFH23498.1| polyribonucleotide nucleotidyltransferase [Neisseria polysaccharea
           ATCC 43768]
          Length = 707

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 377 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542

Query: 238 ISNE 241
           ++  
Sbjct: 543 VAGP 546



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 17  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 76  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 131 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 177

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 178 LVVAGTSKAVLM 189


>gi|309389238|gb|ADO77118.1| polyribonucleotide nucleotidyltransferase [Halanaerobium praevalens
           DSM 2228]
          Length = 696

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 90/246 (36%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH---LLTTATLEEKVPMWIRNTKH- 56
           +R  GR  +++R I         A GS +   G+T    +LT  +  ++  ++       
Sbjct: 310 IRPDGRDYDEIRPIWAEVDFVPRAHGSGVFTRGETQALSVLTLGSARDEQTLFGLGENET 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y       G      +   R+ G       +  +AL  V+         I I  
Sbjct: 370 KRYMHHYNFPSFCVGETSPMRSPGRREIGHGT----LGEKALLPVIPSEEEFPYTIRIVS 425

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           +V++++G +  A+I G+ +AL                   +K  VA I+ G++       
Sbjct: 426 EVLESNGSSSQASICGSSLALMAAGV-------------PIKAPVAGIAMGLMKKDDDVV 472

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           I+ D+   ED   D+D     T++G I  +Q   +    S D     L  AK     ++ 
Sbjct: 473 ILSDIQGFEDFNGDMDFKVAGTEAG-ITALQMDIKLKGLSYDILEEALEKAKKGRMHIMG 531

Query: 233 LQKDVI 238
              DVI
Sbjct: 532 KMLDVI 537



 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 85/229 (37%), Gaps = 26/229 (11%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPM---WIRNTKHGWITAEYGMLPR 68
           + +       K A GS +V+ GD+ +L TA ++E  P    +     +       G +P 
Sbjct: 12  QFNFQTGKLAKQANGSVVVRCGDSQVLVTAVMDEPRPGMNYFPLMVNYEERVYAIGQIPG 71

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
           S    ++RE   GR    +    R+I R++R +         QI+     +  D      
Sbjct: 72  SV---MRRE---GRPRDEATLAARVIDRSIRPLFPEGFRHDVQIVATILSVDDDHDPEVL 125

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G +  +   ++    I++ +  E    D+D
Sbjct: 126 ALNGASAAL-------------TLSDIPFAGPIGGVKVALVDEQIIINPNEEERENSDLD 172

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              V      I+ V+ SA     S+      + +A   I  +I LQ+++
Sbjct: 173 L-VVAGSKDAIMMVEASANE--VSEATVLEAMKVAHAEIKKIISLQEEM 218


>gi|146299204|ref|YP_001193795.1| polynucleotide phosphorylase/polyadenylase [Flavobacterium
           johnsoniae UW101]
 gi|187610263|sp|A5FJZ1|PNP_FLAJO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146153622|gb|ABQ04476.1| Polyribonucleotide nucleotidyltransferase [Flavobacterium
           johnsoniae UW101]
          Length = 714

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 84/243 (34%), Gaps = 20/243 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +RL GR+  ++R I           GS L   G+T  L T TL    E            
Sbjct: 321 IRLDGRKTTEIRPIWCETDYLPSVHGSSLFTRGETQALATVTLGTSREANQIDSPSEQGE 380

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG        S R+ G       +  RAL++++         I +  
Sbjct: 381 EKFYLHYNFPPFSTGEAKPLRGTSRREVGHG----NLAQRALKNMIPAD--CPYTIRVVS 434

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G +  A +    +AL D    M    +   +  +  G   A+         + D
Sbjct: 435 EVLESNGSSSMATVCAGTMALMDAGVQMVKPVSGIAMGLITDGEKFAV---------LSD 485

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I   Q   +      D     L  A+D    ++    +
Sbjct: 486 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKIDGLRYDIMEQALAQARDGRLHILGKLTE 544

Query: 237 VIS 239
            I+
Sbjct: 545 TIA 547



 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 76/230 (33%), Gaps = 28/230 (12%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R IS+      K A+GS +V+ G+  LL TA    T    V        +    A  G  
Sbjct: 16  RSISIETGKLAKQADGSVVVRLGNCMLLATAVSARTSNPGVDFLPLTVDYREKFAAAGRF 75

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KREA   R         R++ R LR +         Q++I   ++  D    
Sbjct: 76  P---GGFFKREA---RPSDSEVLTMRLVDRVLRPLFPDDYHAETQVMI--QLMSHDDNV- 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                     + D L  +   +            ++ +    + G  +++    E    D
Sbjct: 127 ----------MPDALAGLAASAALAVSDIPFYNLISEVRVARIDGKLVINPSRTELEKSD 176

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA-DLIKLQK 235
           +D   +      +  V+G  E    S+      +  A + I   +   QK
Sbjct: 177 IDM-MIGASLDSVAMVEG--EMKEISEAEMIEAIKFAHEAIKVQIHAQQK 223


>gi|19705029|ref|NP_602524.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|81485419|sp|Q8RIA1|PNP_FUSNN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|19712941|gb|AAL93823.1| Polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 703

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 91/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
           R+ GR   ++R +     V     GS L   G+T  L   TL  K    + +      + 
Sbjct: 328 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 387

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RAL  V+         I +  +
Sbjct: 388 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGS----LAERALSYVIPTEEEFPYTIRVVSE 443

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  ++L                   +K HVA I+ G++        
Sbjct: 444 ITESNGSSSQASICGGSLSLMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 490

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T SG I  +Q   +    +++     LN A      +++L
Sbjct: 491 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHQARIQILEL 549

Query: 234 QKDVISNE 241
             + IS  
Sbjct: 550 MNNTISKP 557



 Score = 63.6 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 29/231 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + ++   +S+ + G+ ++++GDT LL+TA       +    +     +       G  
Sbjct: 18  RTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLTVDYIEKFYSSGKF 77

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR    +  + R+I R +R +       +  + I   V+  D    
Sbjct: 78  P---GGFNKRE---GRPSTNATLVARLIDRPIRPMFPDGF--NYDVHIVNTVLSYD---- 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                   + + D L  +              G VA++  G   G  I++    E    +
Sbjct: 126 -------EINIPDYLGVIGSSLALMISDIPFLGPVASVIVGYKNGEFILNPSPKELEESE 178

Query: 187 VDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T    ++VE    A      ++     +  A + I  + + Q++
Sbjct: 179 LDLIVAGTKEAVNMVE----AGAKELDEETMLKAIMFAHENIKKICEFQEE 225


>gi|316983743|gb|EFV62724.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           H44/76]
 gi|325200556|gb|ADY96011.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           H44/76]
          Length = 706

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|225075235|ref|ZP_03718434.1| hypothetical protein NEIFLAOT_00235 [Neisseria flavescens
           NRL30031/H210]
 gi|224953410|gb|EEG34619.1| hypothetical protein NEIFLAOT_00235 [Neisseria flavescens
           NRL30031/H210]
          Length = 707

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 377 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542

Query: 238 ISNE 241
           ++  
Sbjct: 543 VAGP 546



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 17  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 76  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 131 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 177

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 178 LVVAGTSKAVLM 189


>gi|126327460|ref|XP_001368047.1| PREDICTED: similar to Chain G, Structure Of The Human Rna Exosome
           Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42,
           Csl4, Rrp4, And Rrp40 [Monodelphis domestica]
          Length = 276

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 90/257 (35%), Gaps = 25/257 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P  + +   G+I  
Sbjct: 23  RPDGRELGEFRTTTVNIGSITTADGSALVKLGNTTVICGVKGEFAAPP-VDSLNKGYIVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115
              + P  +         SG  G  +Q   + I   +    ++    L    G    ++ 
Sbjct: 82  NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISHGKLAWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
           CD+  +  DG    A       AL +             + + + K +    ++ H  A 
Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPAVIINEETGLAEVNLKKKSHLNIRTHPIAT 196

Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           S  +      IVD    E+         VM + G +  +      +  +       ++ A
Sbjct: 197 SFAIFDDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255

Query: 224 KDRIADLIKLQKDVISN 240
             R  ++ KL  +VI +
Sbjct: 256 VTRHKEVKKLMDEVIKS 272


>gi|109120492|ref|XP_001085228.1| PREDICTED: exosome complex exonuclease RRP43 isoform 2 [Macaca
           mulatta]
          Length = 276

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 88/257 (34%), Gaps = 25/257 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P        G++  
Sbjct: 23  RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-TDAPDKGYVVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115
              + P  +         SG  G  +Q   + I   +    ++    L    G    ++ 
Sbjct: 82  NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLAWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
           CD+  +  DG    A       AL +             + + + K +    ++ H  A 
Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVAT 196

Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           S  +      IVD    E+         VM + G +  +      +  +       ++ A
Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255

Query: 224 KDRIADLIKLQKDVISN 240
             R  ++ KL  +VI +
Sbjct: 256 VTRHKEVKKLMDEVIKS 272


>gi|228960024|ref|ZP_04121688.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228799540|gb|EEM46493.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 712

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK  
Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVG 530



 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|29840519|ref|NP_829625.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila caviae
           GPIC]
 gi|75539485|sp|Q822C1|PNP_CHLCV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|29834868|gb|AAP05503.1| polyribonucleotide nucleotidyltransferase [Chlamydophila caviae
           GPIC]
          Length = 694

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 88/247 (35%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKH 56
           +R  GR    +R IS+         GSCL   G+T    + T   E     +  +     
Sbjct: 313 VRSDGRAITTIRPISIDTSFLPRTHGSCLFTRGETQTVAVCTLGSEAMAQRYEDLNGEGL 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +     G  G R     ++  +AL   +   A     I I+ 
Sbjct: 373 AKFYLQYFFPPFSVGEVGR----IGSPGRREIGHGKLAEKALSHTLPDPAKFPYTIRIES 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G  +AL D                 +K  +A I+ G++       
Sbjct: 429 NITESNGSSSMASVCGGCLALMDAGV-------------PIKTPIAGIAMGLILDNDHVT 475

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D        G I   Q   +    +     A L  AK     ++ 
Sbjct: 476 ILSDISGLEDYLGDMDFKVAGNTEG-ITAFQMDIKVEGITPTIMQAALAQAKAGRQHILD 534

Query: 233 LQKDVIS 239
           + K+ ++
Sbjct: 535 IMKEALA 541



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 83/233 (35%), Gaps = 31/233 (13%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHL---LTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
                +++ A G+ L +  +T +   +  A LEE V        +     ++  + ++ G
Sbjct: 18  FETGKIARQANGAVLARMQETWVFSSVCAANLEEPVDFLPLRVDYQE---KFSSIGKTLG 74

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAA 129
             +KRE   GR   R     R+I R++R  +    +   Q++        DG T     A
Sbjct: 75  GFIKRE---GRPTEREILTSRLIDRSMRPSLPNRLMQDVQVLSYVW--SYDGVTLPDPIA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           I G   AL                       VA +  G +    +V+    E     ++ 
Sbjct: 130 ICGVSAALA-------------ISDIPQISVVAGVRVGFVNNSWVVNPTKAEMDVSRMEL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
               T++  I+ ++G       +++     +      IA + +  KD +  +V
Sbjct: 177 VLAGTENA-ILMIEG--HCDFLTEEQVIEAIEFGHKHIATICRAIKD-LQQKV 225


>gi|229146378|ref|ZP_04274749.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST24]
 gi|228637011|gb|EEK93470.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-ST24]
          Length = 717

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK  
Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVG 530



 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|228922561|ref|ZP_04085861.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228954083|ref|ZP_04116112.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229047493|ref|ZP_04193083.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH676]
 gi|229071305|ref|ZP_04204528.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F65185]
 gi|229081062|ref|ZP_04213572.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock4-2]
 gi|229111278|ref|ZP_04240831.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock1-15]
 gi|229129083|ref|ZP_04258056.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-Cer4]
 gi|229152007|ref|ZP_04280202.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1550]
 gi|229191976|ref|ZP_04318946.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
           10876]
 gi|296504303|ref|YP_003666003.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
           BMB171]
 gi|228591527|gb|EEK49376.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
           10876]
 gi|228631356|gb|EEK87990.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1550]
 gi|228654320|gb|EEL10185.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           BDRD-Cer4]
 gi|228672054|gb|EEL27345.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
           Rock1-15]
 gi|228702106|gb|EEL54582.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock4-2]
 gi|228711759|gb|EEL63711.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F65185]
 gi|228723740|gb|EEL75095.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH676]
 gi|228805649|gb|EEM52239.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228836990|gb|EEM82331.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|296325355|gb|ADH08283.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
           BMB171]
          Length = 712

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK  
Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVG 530



 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|325285569|ref|YP_004261359.1| polyribonucleotide nucleotidyltransferase [Cellulophaga lytica DSM
           7489]
 gi|324321023|gb|ADY28488.1| Polyribonucleotide nucleotidyltransferase [Cellulophaga lytica DSM
           7489]
          Length = 747

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 82/230 (35%), Gaps = 18/230 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +RL GR+ +++R I           GS +   G+T  L T TL    E            
Sbjct: 317 LRLDGRKTDEIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLGTSREANQIDMPSYEGE 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG        S R+ G       +  RAL+++V         + +  
Sbjct: 377 ERFYLHYNFPPFSTGEARPLRGTSRREVGHG----NLAQRALKNMVPAD--CPYTVRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G +  A +    +AL D    +    +   +     G ++    G      + D
Sbjct: 431 EVLESNGSSSMATVCAGTMALMDAGVQLIKPVSGIAM-----GLISDAETGKYA--VLSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           +   ED   D+D     T+ G I   Q   +    S +     L  A++ 
Sbjct: 484 ILGDEDHLGDMDFKVTGTEDG-ITACQMDIKVKGLSYEILVNALKQAREG 532



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 77/227 (33%), Gaps = 26/227 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           REIS+      K A GS +V+ G+  LL T      +  V        +    A  G  P
Sbjct: 16  REISIETGKLAKQAHGSVVVQSGNCMLLCTLVSNYKQSDVDFLPLTVDYREKFASAGRYP 75

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KREA        +    R++ R LR +         Q++I   ++  D     
Sbjct: 76  ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKDYHAETQVMI--QLMSHDENV-- 125

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                    + D +  +   +         +  ++    G + G  I++    +    D+
Sbjct: 126 ---------MPDAMAGLAASAAIQLSDVPFETPISEARVGRINGEFIINPTRAQLEESDI 176

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D   +   +  ++ V+G  E    S++     +  A + I      Q
Sbjct: 177 DM-MIGASADSVMMVEG--EMLEISEEEMAEAIKFAHEAIKVQCAAQ 220


>gi|218232388|ref|YP_002368608.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus B4264]
 gi|226702617|sp|B7HDT0|PNP_BACC4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218160345|gb|ACK60337.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus B4264]
          Length = 712

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK  
Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVG 530



 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|118602474|ref|YP_903689.1| polynucleotide phosphorylase/polyadenylase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|187611284|sp|A1AWB1|PNP_RUTMC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|118567413|gb|ABL02218.1| Polyribonucleotide nucleotidyltransferase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 695

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 92/247 (37%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
           R+ GR    +RE+ +   V +   GS L   G+T  L   TL  K    +         +
Sbjct: 315 RIDGRDNETVRELKIETGVLENTHGSALFTRGETQALVVTTLGSKREAQLIEKLESSERQ 374

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           + +    Y   P   G   +      R+ G      R++ R + + +         + + 
Sbjct: 375 NDYFLLHYNFPPYCVGEIGRVGTTKRREIGHG----RLVRRGIAACLPSIEEFPYTVRVV 430

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            ++ +++G +  A+I GA ++L D                 +K  VA I+ G++      
Sbjct: 431 SEITESNGSSSMASICGASLSLMDAGV-------------PIKAPVAGIAMGLVKEGDRF 477

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I  +Q   +    +++     L  AK+   +++
Sbjct: 478 TILTDILGDEDHLGDMDFKVAGTSRG-INALQMDIKIQGITREIMEIALKQAKEARLNIL 536

Query: 232 KLQKDVI 238
                VI
Sbjct: 537 GQMNQVI 543



 Score = 82.1 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 76/217 (35%), Gaps = 27/217 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           I+L    +++ A G+ LV   DT +L T             +  +  +   T   G +P 
Sbjct: 15  ITLETGRIARQAHGAVLVSMDDTQVLVTVVGSKKMHPGQDFFPLSVDYIEKTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KREA   R   +     R+I R +R +     +   Q++I      ++      
Sbjct: 74  --GGFLKREA---RPSEKETLTSRLIDRPIRPLFPNGFMNEVQVLITVISANSEVDPDII 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + +   G   G   ++  Y E    D+D
Sbjct: 129 SMLGVSAALSISGI-------------PFNGPIGSARVGYSNGKYTLNPTYTELVDSDLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                TD   I+ V+  +E +  S+      +  A +
Sbjct: 176 MVVAGTDKA-ILMVE--SEASELSEKIILDAIIYAHE 209


>gi|77464694|ref|YP_354198.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
           2.4.1]
 gi|126463534|ref|YP_001044648.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332559587|ref|ZP_08413909.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
           WS8N]
 gi|123590859|sp|Q3IYT7|PNP_RHOS4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611277|sp|A3PNG0|PNP_RHOS1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|77389112|gb|ABA80297.1| polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides
           2.4.1]
 gi|126105198|gb|ABN77876.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332277299|gb|EGJ22614.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
           WS8N]
          Length = 716

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 95/248 (38%), Gaps = 27/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I     V     GS L   G+T  L   TL       I +  HG   +
Sbjct: 318 RIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVTTLGTGEDEQIIDALHGNSRS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+  +      I +  +
Sbjct: 378 NFLLHYNFPPYSVGEVGRF----GPPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP- 173
           + +++G +  A++ G  +++ D                 LK  VA ++ G++    G   
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEDDGKWA 480

Query: 174 -IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T++G I  +Q   + A  + +     L  AKD    ++ 
Sbjct: 481 VLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEQALAQAKDGRMHILG 539

Query: 233 LQKDVISN 240
                +S+
Sbjct: 540 EMSKALSS 547



 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 76/231 (32%), Gaps = 33/231 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+GS +   G+T ++   T     +     +     +       G +P 
Sbjct: 16  LTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLTVHYQERYYAAGKVP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++   V+  D      
Sbjct: 75  --GGFFKREA---RPSEKETLTSRLIDRPIRPLFVDGF--KNEVLLIVTVLSHDLVNEPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE----D 182
             A+  A  AL                     G + A   G   G  +++ D  +     
Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIGAARVGFAGGEYVLNPDVDDMQKLR 174

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
              +   + V+  +   V +  S E    S+      +    + +  +I +
Sbjct: 175 ENPEQRLDLVIAGTKDAVMMVES-EAYELSEAEMLGAVKFGHEAMQPVIDM 224


>gi|312898454|ref|ZP_07757844.1| polyribonucleotide nucleotidyltransferase [Megasphaera
           micronuciformis F0359]
 gi|310620373|gb|EFQ03943.1| polyribonucleotide nucleotidyltransferase [Megasphaera
           micronuciformis F0359]
          Length = 717

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 90/246 (36%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTK---H 56
           +R  GR+ N++R +S    + K   G+ L   G T +L+ ATL        I        
Sbjct: 312 IRPDGRKVNEVRPVSCEVGLFKRTHGTGLFTRGQTQILSFATLAPLSEAQHIDGVGTETE 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G      ++  RAL  V+         I +  
Sbjct: 372 RRYMHHYNFPSFSVGETRSSRGPGRREIGHG----KLAERALTQVMPSEEEFPYAIRVVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +   ++ G+ +AL D                 +K  V+ ++ G++       
Sbjct: 428 EVLESNGSSSMGSVCGSTLALMDAGV-------------PIKAPVSGVAMGLVTKDDDFT 474

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G +  +Q   +    S++     L  A +    ++ 
Sbjct: 475 ILTDIQGMEDALGDMDFKVAGTTKG-VTAIQMDIKIKGLSREILDTALKQAHEGRLHIMD 533

Query: 233 LQKDVI 238
               V+
Sbjct: 534 KMLAVL 539



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 87/228 (38%), Gaps = 27/228 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R +++      K + G+ LV++GDT +  +AT      E    +     +       G +
Sbjct: 13  RPLTVEVGKLAKQSSGAALVRYGDTAVFVSATGSKEAREDADFFPLTVDYEEKMYAVGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+    +    R+I R +R +   +      ++     +  D    
Sbjct: 73  P---GGFIKRE---GKPPESATLFARLIDRPIRPLFPKTYRHDVHVVAYDFAVDHDNAPE 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA VAL                     G +A +  G + G  I++    +    D
Sbjct: 127 IAAMIGASVALCM-------------SHIPFAGPIAGVRVGRIDGNFIINPTVEQSEKSD 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           +D     T    I+ V+G A+    S D   A++  A + I  +++ Q
Sbjct: 174 MDIVVAGTKDA-ILMVEGGAKEVPES-DILDAIM-FAHEEIRKVVEFQ 218


>gi|229180084|ref|ZP_04307428.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 172560W]
 gi|228603293|gb|EEK60770.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 172560W]
          Length = 712

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG----ALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK  
Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVG 530



 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|257791379|ref|YP_003181985.1| Polyribonucleotide nucleotidyltransferase [Eggerthella lenta DSM
           2243]
 gi|257475276|gb|ACV55596.1| Polyribonucleotide nucleotidyltransferase [Eggerthella lenta DSM
           2243]
          Length = 741

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 89/246 (36%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMW--IRNTKHG 57
           R  GR+   +R + +         GS L + G T  L   T  +  +      I   +  
Sbjct: 315 RADGRRPEDIRPLYIVPGYLPRVHGSGLFQRGQTQALSVCTLGMLNEWQRLDTIDPAEGK 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
               +Y   P  TG   +  A   R+ G       +  RAL  V+         I +  +
Sbjct: 375 RYMHQYNFPPYCTGETGRMGAPKRREIGHG----ALAERALIPVLPSEDEFPYAIRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           V++++G +  A+  G+ +AL D                 +K  V+ I+ G++       I
Sbjct: 431 VLESNGSSSMASTCGSTLALMDAGV-------------PIKAPVSGIAMGLIKEGDDVVI 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    S D     L  A +  A ++  
Sbjct: 478 LSDIQGIEDFLGDMDFKVCGTAKG-ITALQMDNKARGLSVDILARALKQASEGRAYILDA 536

Query: 234 QKDVIS 239
             + I+
Sbjct: 537 MLETIA 542



 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 28/230 (12%)

Query: 15  SLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRST 70
            L    ++K A GS +V  GDT +L TA +   E+    +             G +P   
Sbjct: 16  RLETGELAKQATGSVVVTQGDTTVLVTAVISKEEKDYDFFPLTVDFIEKMYAVGRIPGGY 75

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
             R  R +  G          RM+ R +R            ++    V+ +     T  +
Sbjct: 76  LKREARPSDKGTLT------ARMVDRPIRPGFADGFKREVHVVCTTLVVDSINPPDTICV 129

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG--MLCGYPIVDLDYGEDSTIDVD 188
            GA  AL                     G  A +  G  +  G  IV+  + E    D++
Sbjct: 130 MGASAALMLGAA-------------PFDGPAACVRIGRDVETGEFIVNPTFEESENSDLE 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                T   +I  V+  A+    S++   A +   ++ IA   + Q+  +
Sbjct: 177 LTIAGTAD-YISMVEAGADE--ISEEDMLAAMTFGQEAIAAFCEAQQRFL 223


>gi|330982561|gb|EGH80664.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 519

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 26/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 93  RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 152

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R++++++  + +    I +  +
Sbjct: 153 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 208

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA +AL D    M             K  VA I+ G++  G     
Sbjct: 209 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAI 255

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A + 
Sbjct: 256 LTDILGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 307


>gi|116073519|ref|ZP_01470781.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           RS9916]
 gi|116068824|gb|EAU74576.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           RS9916]
          Length = 721

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 34/237 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           REI LT    +  A GS +++ GDT +L TA   +  E +        +       G +P
Sbjct: 13  REIRLTTGRYAPQAGGSVMIECGDTSVLVTATRSSGREGIDFLPLICDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----ADG 123
              G+ ++RE   GR   R+  I R+I R +R +         QI+  C  +     AD 
Sbjct: 73  ---GSFMRRE---GRPPERATLISRLIDRPMRPLFPNWLRDDLQIVATCMSLDERVPAD- 125

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
                A+TGA +A                     +G +AA+  G+L    +++  Y E  
Sbjct: 126 ---VLAVTGASLATLMAGI-------------PFQGPMAAVRVGLLGDDFVLNPSYREIE 169

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             D+D     T  G +V V+  A +    +      ++   + + +LIK Q+ ++  
Sbjct: 170 RGDLDLVVAGTPEG-VVMVEAGANQ--LPEQDVIEAIDFGYEAVCELIKAQQAILKE 223



 Score = 96.7 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 91/246 (36%), Gaps = 27/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           R+ GR  +++R IS    V  K   GS L + G T +L+TATL           +  +  
Sbjct: 323 RVDGRALDEVRTISAAAGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPSNE 382

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      +   R+ G       +  RA+  V+         + +  
Sbjct: 383 KTYLHHYNFPPYSVGETRPMRSPGRREIGHG----ALAERAIIPVLPAKDTFPYVVRVVS 438

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V+ ++G T   ++ G+ +AL D                 LK  V+  + G++       
Sbjct: 439 EVLSSNGSTSMGSVCGSTLALMDAGV-------------PLKSPVSGAAMGLIKEGDEVR 485

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     TD G I  +Q   +      +     +N A+     +++
Sbjct: 486 ILTDIQGIEDFLGDMDFKVAGTDKG-ITALQMDMKITGLPVNTVADAVNQARPARLHILE 544

Query: 233 LQKDVI 238
              + I
Sbjct: 545 KMMEAI 550


>gi|298246516|ref|ZP_06970322.1| polyribonucleotide nucleotidyltransferase [Ktedonobacter racemifer
           DSM 44963]
 gi|297553997|gb|EFH87862.1| polyribonucleotide nucleotidyltransferase [Ktedonobacter racemifer
           DSM 44963]
          Length = 816

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 87/250 (34%), Gaps = 30/250 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR    +R I+    +     GS L   G T +L+  T     EE+V   +    +
Sbjct: 311 IRPDGRDTKTIRNITCEVGLLPRTHGSALFTRGQTQVLSVITLGSPGEEQVLDGLGTNDN 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG          R+ G       +  RA+  V+         I    
Sbjct: 371 KRFMHHYNFPPYSTGESKPLRGPGRREIGHG----ALAERAVSPVIPTQEEFPYTIRAVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           D++ ++G T   ++ G  +AL +                 +   VA ++ G++ G     
Sbjct: 427 DILSSNGSTSMGSVCGTTLALMEAGV-------------PIHAPVAGVAMGLITGEGERE 473

Query: 173 ----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T  G +  +Q   +    + D     L  A +   
Sbjct: 474 GKWAVLSDIQGIEDALGDMDFKVAGTADG-VTALQMDIKVKGITYDVMAKALEQAHEGRM 532

Query: 229 DLIKLQKDVI 238
            +++   D I
Sbjct: 533 FIMEKMLDAI 542



 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 86/232 (37%), Gaps = 27/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R +S+    V++ + G+ LV++GDT +L TA       E +  +             G +
Sbjct: 12  RVMSIETGRVAEQSSGAVLVRYGDTVILATAVGSDEPREGIDFFPLTVDVEERMYAAGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR    +    R+  R LR +         QI+I    +  +    
Sbjct: 72  P---GGFIKRE---GRATEHAILASRLTDRPLRPLFPKGYRNDVQIVITVLSVDQENDPD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              I GA  AL                     G V A+  G +    +++      S   
Sbjct: 126 IMGIVGASAALS-------------ISDVPFAGPVGAVRVGYVDDQFVINPPASAMSRSK 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           +D     T    I+ V+  A+     +D     L +  + + DL+K+Q+ ++
Sbjct: 173 LDLAIAGTADA-IMMVEAGAKE--LPEDMMLEALRVGHEALQDLVKMQEKLV 221


>gi|28174955|gb|AAH27228.2| Pnpt1 protein [Mus musculus]
          Length = 647

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 91/249 (36%), Gaps = 19/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R IS    + K   GS L + G T +L T T +        +++   I  
Sbjct: 222 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 281

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   V+ R+ G       +  +AL  V+         I 
Sbjct: 282 VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHG----ALAEKALCPVIPKDF--PFTIR 335

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  V K +      G +  Y 
Sbjct: 336 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNPEK---GEIEDYR 392

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T+ G I  +Q   +            +  A     ++++
Sbjct: 393 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGVPIKIIMEAIQQASVAKKEILQ 451

Query: 233 LQKDVISNE 241
           +    IS  
Sbjct: 452 IMNKTISKP 460



 Score = 43.5 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 17/114 (14%)

Query: 97  ALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAWVALHDCLQHMEDCSNKFQLS 154
           ++R +         Q++  C+++  DG       A+ GA VAL                 
Sbjct: 1   SIRPLFPAGYFYDTQVL--CNLLAVDGINEPDILAVNGASVALS-------------LSD 45

Query: 155 QVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
               G V A+  GM+ G  +V+    E S+  ++          IV ++ SAE 
Sbjct: 46  IPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPKSQIVMLEASAEN 99


>gi|253583637|ref|ZP_04860835.1| polyribonucleotide nucleotidyltransferase [Fusobacterium varium
           ATCC 27725]
 gi|251834209|gb|EES62772.1| polyribonucleotide nucleotidyltransferase [Fusobacterium varium
           ATCC 27725]
          Length = 699

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 91/246 (36%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR+  ++R +     V     GS +   G+T  +   TL  K    + +        
Sbjct: 324 RVDGRKTTEIRPLFAETGVLPIPHGSAMFTRGETQAIVVTTLGTKEDEQLVDDLEKEYFK 383

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RAL  V+         I +  +
Sbjct: 384 KFYLHYNFPPYSVGETGRMGSPGRRELGHGS----LAERALSYVIPSEEEFPYTIRVVSE 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  ++L                   +K HVA I+ G++        
Sbjct: 440 ITESNGSSSQASICGGSLSLMAAGV-------------PIKEHVAGIAMGLIKEGEEFTV 486

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     L  A D   +++ +
Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKNG-ITALQMDIKITGITEEIMRIALKQALDARNEILVV 545

Query: 234 QKDVIS 239
             + IS
Sbjct: 546 MNNAIS 551



 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 76/230 (33%), Gaps = 27/230 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +S +   +++ + G+ +V++G+T LL+T        +    +     +       G  
Sbjct: 14  RTLSFSTGKIARQSCGAVMVQYGETVLLSTVNRSKEPRKGADFFPLTVDYIEKFYAAGKF 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR    +    R+I R +R +          I+             
Sbjct: 74  P---GGFNKRE---GRPSTNATLTARLIDRPIRPMFPEGFNHDVHIVNTVFSYDEKNTPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              I G+ +AL                     G VA +  G   G  I++    E+    
Sbjct: 128 YLGIIGSSMAL-------------MLSDLPFLGPVAGVVVGYKNGEFILNPT-PEELETS 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                V      +  V+  A+     ++   A +  A + I  +   Q++
Sbjct: 174 ELELSVAGSKDAVNMVEAGAKE--LDEETMLAAIMFAHENIKKICAFQEE 221


>gi|325831548|ref|ZP_08164802.1| polyribonucleotide nucleotidyltransferase [Eggerthella sp. HGA1]
 gi|325486802|gb|EGC89250.1| polyribonucleotide nucleotidyltransferase [Eggerthella sp. HGA1]
          Length = 741

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 89/246 (36%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMW--IRNTKHG 57
           R  GR+   +R + +         GS L + G T  L   T  +  +      I   +  
Sbjct: 315 RADGRRPEDIRPLYIVPGYLPRVHGSGLFQRGQTQALSVCTLGMLNEWQRLDTIDPAEGK 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
               +Y   P  TG   +  A   R+ G       +  RAL  V+         I +  +
Sbjct: 375 RYMHQYNFPPYCTGETGRMGAPKRREIGHG----ALAERALIPVLPSEDEFPYAIRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           V++++G +  A+  G+ +AL D                 +K  V+ I+ G++       I
Sbjct: 431 VLESNGSSSMASTCGSTLALMDAGV-------------PIKAPVSGIAMGLIKEGDDVVI 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    S D     L  A +  A ++  
Sbjct: 478 LSDIQGIEDFLGDMDFKVCGTAKG-ITALQMDNKARGLSVDILARALKQASEGRAYILDA 536

Query: 234 QKDVIS 239
             + I+
Sbjct: 537 MLETIA 542



 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 28/230 (12%)

Query: 15  SLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRST 70
            L    ++K A GS +V  GDT +L TA +   E+    +             G +P   
Sbjct: 16  RLETGELAKQATGSVVVTQGDTTVLVTAVISKEEKDYDFFPLTVDFIEKMYAVGRIPGGY 75

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
             R  R +  G          RM+ R +R            ++    V+ +     T  +
Sbjct: 76  LKREARPSDKGTLT------ARMVDRPIRPGFADGFKREVHVVCTTLVVDSINPPDTICV 129

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG--MLCGYPIVDLDYGEDSTIDVD 188
            GA  AL                     G  A +  G  +  G  IV+  + E    D++
Sbjct: 130 MGASAALMLGAA-------------PFDGPAACVRIGRDVETGEFIVNPTFEESENSDLE 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                T   +I  V+  A+    S++   A +   ++ IA   + Q+  +
Sbjct: 177 LTIAGTAD-YISMVEAGADE--ISEEDMLAAMTFGQEAIAAFCEAQQRFL 223


>gi|317490521|ref|ZP_07948999.1| polyribonucleotide nucleotidyltransferase [Eggerthella sp.
           1_3_56FAA]
 gi|316910372|gb|EFV32003.1| polyribonucleotide nucleotidyltransferase [Eggerthella sp.
           1_3_56FAA]
          Length = 741

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 89/246 (36%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMW--IRNTKHG 57
           R  GR+   +R + +         GS L + G T  L   T  +  +      I   +  
Sbjct: 315 RADGRRPEDIRPLYIVPGYLPRVHGSGLFQRGQTQALSVCTLGMLNEWQRLDTIDPAEGK 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
               +Y   P  TG   +  A   R+ G       +  RAL  V+         I +  +
Sbjct: 375 RYMHQYNFPPYCTGETGRMGAPKRREIGHG----ALAERALIPVLPSEDEFPYAIRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           V++++G +  A+  G+ +AL D                 +K  V+ I+ G++       I
Sbjct: 431 VLESNGSSSMASTCGSTLALMDAGV-------------PIKAPVSGIAMGLIKEGDDVVI 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    S D     L  A +  A ++  
Sbjct: 478 LSDIQGIEDFLGDMDFKVCGTAKG-ITALQMDNKARGLSVDILARALKQASEGRAYILDA 536

Query: 234 QKDVIS 239
             + I+
Sbjct: 537 MLETIA 542



 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 28/230 (12%)

Query: 15  SLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRST 70
            L    ++K A GS +V  GDT +L TA +   E+    +             G +P   
Sbjct: 16  RLETGELAKQATGSVVVTQGDTTVLVTAVISKEEKDYDFFPLTVDFIEKMYAVGRIPGGY 75

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
             R  R +  G          RM+ R +R            ++    V+ +     T  +
Sbjct: 76  LKREARPSDKGTLT------ARMVDRPIRPGFADGFKREVHVVCTTLVVDSINPPDTICV 129

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG--MLCGYPIVDLDYGEDSTIDVD 188
            GA  AL                     G  A +  G  +  G  IV+  + E    D++
Sbjct: 130 MGASAALMLGAA-------------PFDGPAACVRIGRDVETGEFIVNPTFEESENSDLE 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                T   +I  V+  A+    S++   A +   ++ IA   + Q+  +
Sbjct: 177 LTIAGTAD-YISMVEAGADE--ISEEDMLAAMTFGQEAIAAFCEAQQRFL 223


>gi|269958853|ref|YP_003328641.1| polynucleotide phosphorylase/polyadenylase [Anaplasma centrale str.
           Israel]
 gi|269848683|gb|ACZ49327.1| polynucleotide phosphorylase/polyadenylase [Anaplasma centrale str.
           Israel]
          Length = 802

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 88/243 (36%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-TATL---EEKVPMWIRNTKHG 57
           R+ GR  +Q+R I +   +   + GS L   GDT  L  TA     +E+V       +  
Sbjct: 320 RVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVITALGTPQDEQVVDGFDGDRRE 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     + G      A     G R     ++  RA+  V+   A     I +  +
Sbjct: 380 RFLLHYNFPSYAVGE----AAALRPPGRREIGHGKLAWRAIHPVLPTKADFPYTIRVVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + ++DG +  A + GA +AL D    ++       +  + +G   A+         + D+
Sbjct: 436 ITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDRYAV---------LSDI 486

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   +      D     L  A+D    +I     V
Sbjct: 487 IGDEDHLGDMDFKVAGTKEG-ITALQMDMKIRGIGFDIIEKSLQQARDGRLFIIGKMDKV 545

Query: 238 ISN 240
           I  
Sbjct: 546 IKE 548



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 90/231 (38%), Gaps = 28/231 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R + +    +++ A+G+ +V +G T +L+T      +E V       +    +   G +P
Sbjct: 14  RLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKSKEPVDFLPLTVQFLAKSYAVGRIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   G+   R   I R++ R++R +          ++I C+++  D     
Sbjct: 74  ---GGFFKRE---GKPSDRETLISRLVDRSIRPLFPAGFCDE--VVIVCNLLSYD----- 120

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGYPIVDLDYGEDSTI 185
                  V+  + +  +   +            +A    G +   G  I++    E +  
Sbjct: 121 ------QVSPPETVALIGAAAALAISGIPFSTPIAGAKIGYIREEGRYILNPSAEELARS 174

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           ++D  +  T S  +V V+  +E +  S+D     L    +    ++ L ++
Sbjct: 175 ELDMFYSGTKS-SVVMVE--SEASELSEDEMLGALTFGHENCTQVLDLIEE 222


>gi|209966184|ref|YP_002299099.1| polynucleotide phosphorylase/polyadenylase [Rhodospirillum centenum
           SW]
 gi|226702682|sp|B6IVG3|PNP_RHOCS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|209959650|gb|ACJ00287.1| polyribonucleotide nucleotidyltransferase, putative [Rhodospirillum
           centenum SW]
          Length = 707

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 89/243 (36%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I     V   A GS L   G+T  L  ATL       I +   G    
Sbjct: 314 RIDGRTTVDIRPIVSQVGVLPRAHGSALFTRGETQALVVATLGTNQDEQIVDALEGEYRE 373

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++         I +  +
Sbjct: 374 SFMLHYNFPPYSVGEAGR----MGSPGRREIGHGKLAWRAVRPLLPTKETFPYTIRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G+ +++ D    +        +  + +G   A+         + D+
Sbjct: 430 ITESNGSSSMATVCGSSLSMMDAGVPLPRPVAGIAMGLIKEGEKFAV---------LSDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G +  +Q   +  + +++     L  AKD    ++      
Sbjct: 481 LGDEDHLGDMDFKVAGTEKG-VTALQMDIKITSITEEIMKIALAQAKDGRVHILSEMNKA 539

Query: 238 ISN 240
           ++ 
Sbjct: 540 LNT 542



 Score = 82.1 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 75/225 (33%), Gaps = 34/225 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R++ L    V++ A+G+    +GDT +L TA      +  V  +     +       G +
Sbjct: 14  RKLVLETGKVARQADGAVWASYGDTVVLATAVAAKAPKPGVDFFPLTVNYQEKAFAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +     R+I R +R +         Q+I+       +    
Sbjct: 74  P---GGFFKRE---GRPTEKEVLTSRLIDRPIRPLFADGYRNETQVIVTVLSHDLENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+     AL                     G + A   G   G  +++    +    D
Sbjct: 128 IVAMVATSAALTISGI-------------PFLGPIGAARVGYKDGQFVLNPTLEQVEASD 174

Query: 187 VDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNL 222
           +D     T  G ++ V+  A+            F    F  +++L
Sbjct: 175 LDLVVAGTTEG-VLMVESEAKELPEDVMLGAVMFGHREFQPVIDL 218


>gi|123169759|sp|Q14LB9|PNP_SPICI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110005388|emb|CAK99711.1| 3' exoribonuclease transmembrane protein [Spiroplasma citri]
          Length = 702

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 84/233 (36%), Gaps = 26/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           RL GR+ +Q+R +S    +     GS L   G+T +L+  T     E ++   I + +  
Sbjct: 320 RLDGRKLDQIRPLSSEIDILPVVHGSALFTRGETQVLSVVTLGALGENQIIDGITDEESK 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +     G    R      +  + L  ++    +    I I  +
Sbjct: 380 RFMHHYNFPAFSVGETGR----MGPPSRREIGHGALGEKVLLQIIPSEKVFPYTIRIVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           V++++G T  A+I  A +AL                   +   V  I+ G++        
Sbjct: 436 VLESNGSTSQASICAATLALMAAGV-------------PITAPVVGIAMGLIKEKNNYTI 482

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           + D+   ED   D+D     T +G I  +Q   +    ++      L  AK  
Sbjct: 483 LTDIQGMEDHLGDMDFKVAGTATG-ICALQMDIKIVGINKAILQEALKAAKKA 534



 Score = 95.2 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 85/223 (38%), Gaps = 26/223 (11%)

Query: 22  KYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78
           K A GS LV++GDT +L TAT+  K   V  +             G +P   G  +KRE 
Sbjct: 24  KQASGSVLVRYGDTVVLVTATVNNKLSEVDFFPLTVVFQEKLYSVGKIP---GGFLKRE- 79

Query: 79  VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138
             G+         R+I RALR +   +     QI+I+   +  D   R  ++  A +AL 
Sbjct: 80  --GKPSEYGTLSARVIDRALRPLFSENFRNEVQIVINVLAVDNDNDVRMVSLFAASLALS 137

Query: 139 DCLQHMEDCSNKFQLSQVLKGHVA-AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197
                               G VA A+         I++    + +   ++     TD  
Sbjct: 138 -------------ISKIPFAGPVAGALVTVDQKNNIIINPTLEQINDGQMELIVAGTDEA 184

Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            I  V+  A+    S++     +    D I  LI  Q ++I+ 
Sbjct: 185 -INMVEAGAKE--VSENLMLQAILAGHDVIQQLIAFQHEIIAK 224


>gi|56416731|ref|YP_153805.1| polynucleotide phosphorylase/polyadenylase [Anaplasma marginale
           str. St. Maries]
 gi|81359135|sp|Q5PAY0|PNP_ANAMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56387963|gb|AAV86550.1| polyribonucleotide nucleotidyltransferase [Anaplasma marginale str.
           St. Maries]
          Length = 805

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 88/243 (36%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-TATL---EEKVPMWIRNTKHG 57
           R+ GR  +Q+R I +   +   + GS L   GDT  L  TA     +E+V       +  
Sbjct: 320 RVDGRGFDQIRNIEIEVDLIPRSHGSALFTRGDTQALVITALGTPQDEQVVDGFDGDRRE 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     + G      A     G R     ++  RA+  V+   A     I +  +
Sbjct: 380 RFLLHYNFPSYAVGE----AAALRPPGRREIGHGKLAWRAIHPVLPTKADFPYTIRVVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + ++DG +  A + GA +AL D    ++       +  + +G   A+         + D+
Sbjct: 436 ITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDRYAV---------LSDI 486

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   +      D     L  AKD    +I     V
Sbjct: 487 IGDEDYLGDMDFKVAGTKDG-ITALQMDMKIRGIGFDIIEKSLQQAKDGRLFIIGKMDKV 545

Query: 238 ISN 240
           I  
Sbjct: 546 IKE 548



 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 72/191 (37%), Gaps = 25/191 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R + +    +++ A+G+ +V +G T +L+T      +E V       +    +   G +P
Sbjct: 14  RLLVIESGKIARQADGAVVVDYGGTSVLSTVVSQKSKEPVDFLPLTVQFLAKSYAIGRIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   G+   R   I R++ R++R +          I+I C+++  D     
Sbjct: 74  ---GGFFKRE---GKPSDRETLISRLVDRSIRPLFPTGFCDE--IVIVCNLLSYD----- 120

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--IVDLDYGEDSTI 185
                  V+  + +  +   +            +A    G +      I++    E +  
Sbjct: 121 ------QVSPPETVALIGAAAALAISGIPFPTPIAGAKIGYIREEERYILNPSAEELARS 174

Query: 186 DVDANFVMTDS 196
           ++D  +  T S
Sbjct: 175 ELDMFYSGTKS 185


>gi|260785852|ref|XP_002587974.1| hypothetical protein BRAFLDRAFT_124886 [Branchiostoma floridae]
 gi|229273129|gb|EEN43985.1| hypothetical protein BRAFLDRAFT_124886 [Branchiostoma floridae]
          Length = 1444

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 74/242 (30%), Gaps = 30/242 (12%)

Query: 5    GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
            GR+    R   L   V   A GS  ++ G T ++       ++      T  G +  E  
Sbjct: 1198 GRRTAGPR-TDLHAGVVSQATGSAYIEMGQTKVIAAVYGPREIARREEFTMKGRLCCELK 1256

Query: 65   MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
                +   R +    +  + G       ++ +AL   V L      Q+ +   V+Q DG 
Sbjct: 1257 FATFACRRRRQHIQDNQEKDG-----ALIVLQALEPAVCLDRFPKSQVDVYITVLQDDGS 1311

Query: 125  TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               AAIT A   L D    M D              VA  S        ++D   GE+ +
Sbjct: 1312 ALAAAITCAAAGLADAGVMMYDI-------------VAGCSVRQCGERQLLDPSVGEELS 1358

Query: 185  IDV----DANFV----MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             +     D   V    +     +  +          Q      +         +  + KD
Sbjct: 1359 QEGESAEDHGMVTVGLLPSLNQVSALTLDGH---LQQQTAVQAVKTCIGGCQGIYPILKD 1415

Query: 237  VI 238
             +
Sbjct: 1416 CL 1417


>gi|332307057|ref|YP_004434908.1| polyribonucleotide nucleotidyltransferase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174386|gb|AEE23640.1| polyribonucleotide nucleotidyltransferase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 703

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 89/248 (35%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR    +R + +   +     GS L   G+T  +  ATL  +    +       +  
Sbjct: 314 RIDGRDPAMIRALDVATGILPRTHGSALFTRGETQAIVAATLGTERDAQMIDGLNGKEDS 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R +++V+         + +  +
Sbjct: 374 RFMLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIQAVMPSEKEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKNDENFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +Q+     L  AK+    ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTTEG-ITALQMDIKIEGITQEIMQVALKQAKEARLHILGV 535

Query: 234 QKDVISNE 241
               IS  
Sbjct: 536 MDQAISGH 543



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 74/225 (32%), Gaps = 27/225 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +    DT +L +   +         +     +   T   G +P 
Sbjct: 15  VTLETGVIARQATAAVMASMDDTSVLVSVVGKKDTKPGQDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +     +   QII+       +  T   
Sbjct: 74  --GGFFKRE---GRPSEYETLTSRLIDRPIRPLFPDGFMNEVQIIVTVVSANPEIPTDII 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G V A   G   G  +++    E  T  +D
Sbjct: 129 SLIGTSAALA-------------ISGMPFNGPVGAARVGYTDGQYVLNTRTSELETSQLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
                T  G ++ V+  AE    S+D     +    +++  ++  
Sbjct: 176 LVVAGTK-GAVLMVESEAE--VLSEDVMLGAVMYGHEQMQTVVNA 217


>gi|254804638|ref|YP_003082859.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           alpha14]
 gi|254668180|emb|CBA04880.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           alpha14]
          Length = 706

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFFHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|308233974|ref|ZP_07664711.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae DSM
           15829]
 gi|328944017|ref|ZP_08241482.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae DSM
           15829]
 gi|327491986|gb|EGF23760.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae DSM
           15829]
          Length = 751

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 90/249 (36%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------TK 55
           R+ GR   ++R + +         GS L + G T +L+ ATL   +  W R         
Sbjct: 319 RVDGRSATEVRPLMVKGDYLPLVHGSGLFQRGQTQVLSIATLG-MLSEWQRLDTIEPTEG 377

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I   Y   P  TG   +  +   R+ G       +  RAL  V+         I + 
Sbjct: 378 KRYIH-HYNFPPYCTGETGRLGSPKRREIGHG----NLAERALLPVIPSEEEFPYAIRVV 432

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            +V++++G +  A+  G+ +AL D                 +K  V+ ++ G++      
Sbjct: 433 SEVMESNGSSSMASTCGSTLALMDAGV-------------PIKRPVSGVAMGLIQEEGKT 479

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I  +Q   +    + +     L  A +    ++
Sbjct: 480 VVLTDIQGLEDFLGDMDFKVTGTTKG-ITAMQMDNKATGLTPEILRQALKQAHEGRMHIL 538

Query: 232 KLQKDVISN 240
                 +  
Sbjct: 539 DAMLAAVPQ 547



 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 75/219 (34%), Gaps = 27/219 (12%)

Query: 22  KYAEGSCLVKFGDTHL--LTTATLEEK-VPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78
           K A G CLV  GD+ +      + E K    +             G +P   G  +KREA
Sbjct: 24  KQATGQCLVSCGDSTVNLTVVVSKERKNYDFFPLTVDFIEKMYAVGRIP---GGYLKREA 80

Query: 79  VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138
              R   ++    RMI R +R           QI+    V        T  + GA  A++
Sbjct: 81  ---RPTEKATLTARMIDRPIRPSFPDGFRNEVQIVAMPLVADQIHPVDTICVMGASAAMY 137

Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCG--MLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
                              +G +A +  G     G  +V+  Y E    D+D     +++
Sbjct: 138 -------------TGGVPFEGPLACVRIGRDKTTGEYLVNPTYEERKNSDLDLELAGSET 184

Query: 197 GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
             I  ++  AE    S+D     +   +  IA     QK
Sbjct: 185 F-ISMLEAGAEE--ISEDDMLDAMAFGQKAIAAFCAEQK 220


>gi|254669727|emb|CBA03893.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           alpha153]
          Length = 706

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|240123023|ref|ZP_04735979.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID332]
          Length = 706

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 66/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +    T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|150388833|ref|YP_001318882.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus
           metalliredigens QYMF]
 gi|187470925|sp|A6TM05|PNP2_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 2; AltName:
           Full=Polynucleotide phosphorylase 2; Short=PNPase 2
 gi|149948695|gb|ABR47223.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus
           metalliredigens QYMF]
          Length = 702

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 97/249 (38%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +R   R+ +++R IS    +     G+ L   G+T +LT  TL +       +       
Sbjct: 311 IRPDNRKLDEIRPISSEVGILPRTHGTGLFTRGETQVLTVTTLGDLRDAQRIDGLGEEDE 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G        S R+ G       ++ RAL+ ++         I +  
Sbjct: 371 KRYMHHYNFPPYSVGETRFMRGPSRREIGHG----ALVERALKPMIPCKEDFPYAIRLVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V+  +G +  A++ G+ ++L D                 +KG VA I+ G++       
Sbjct: 427 EVLACNGSSSQASVCGSTLSLMDAGV-------------PIKGMVAGIAMGLIKEEGQIA 473

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T++G I  +Q   + A   ++     L  AK     ++ 
Sbjct: 474 ILSDIQGMEDALGDMDLKVAGTENG-ITALQMDIKIAGIDRNIMETALAQAKIGRTHILN 532

Query: 233 LQKDVISNE 241
             K+ I++ 
Sbjct: 533 KMKEAITSP 541



 Score = 82.4 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 27/225 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R   +    V++ A+GSC++K+GDT +L TA      +E +  +  +  +       G +
Sbjct: 12  RPFVVELGKVAELAQGSCMIKYGDTFVLVTACASKEPKEGLDFFPLSCDYEEKLYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE+   R   ++    R+I R +R +         Q+I     +  D    
Sbjct: 72  P---GGFIKRES---RPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATVLSVDQDCPPD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            +A+ G+ +AL                +    G  A++S GM+ G  IV+    +    +
Sbjct: 126 ISAMIGSSIALS-------------VSNIPFMGPTASVSVGMIDGKYIVNPTSEQKELSE 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           ++     T    ++ ++  A     ++      +  A + I  ++
Sbjct: 173 LELIVSGTKDA-VMMIEAGANE--LTEAQILDAIMFAHEEIKKIV 214


>gi|240112443|ref|ZP_04726933.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           MS11]
 gi|240117467|ref|ZP_04731529.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID1]
 gi|240125275|ref|ZP_04738161.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           SK-92-679]
          Length = 706

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 66/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +    T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|319649514|ref|ZP_08003670.1| PnpA protein [Bacillus sp. 2_A_57_CT2]
 gi|317398676|gb|EFV79358.1| PnpA protein [Bacillus sp. 2_A_57_CT2]
          Length = 706

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 84/249 (33%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR  + +R +S    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 VRPDGRGLDVIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGIEEE 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G            G R      +  RAL  ++         I +  
Sbjct: 375 KRFMHHYNFPNFSVGE----TGPIRGPGRREIGHGALGERALEPIIPSEKDFPYTIRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLIKSGEHYS 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTSKG-VTALQMDIKIEGLSREILEEALQQAKKGRMQILD 536

Query: 233 LQKDVISNE 241
                I   
Sbjct: 537 SMLSTIGQP 545



 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 96/235 (40%), Gaps = 27/235 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K +  +     +       G +P
Sbjct: 15  RKLTVEIGQLAKQANGAVLVRYGDTVVLSTATASKEPKNLDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  +  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNDVQVVSMVMSVDQNCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +S G + G  I++    +    D+
Sbjct: 129 AAMFGSSLALS-------------VSDIPFGGPIAGVSVGRIDGEFIINPSVDQAEKSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                 T    I  V+  A+     ++     +    + I  LI  Q++ I++E+
Sbjct: 176 SLVVAGTKDA-INMVEAGADEVP--EETMLEAIMFGHEEIKRLIAFQEE-IASEI 226


>gi|77797833|ref|NP_001030000.1| exosome complex exonuclease RRP45 [Gallus gallus]
 gi|50593178|gb|AAT79383.1| polymyositis/scleroderma autoantigen 1 [Gallus gallus]
          Length = 440

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 91/260 (35%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R + ++        G C+V+ G T +L   +  E VP        G +  
Sbjct: 23  RLDGRQCYDYRNVRISFGPE---HGCCVVELGKTRVLGQVS-CELVPPKPNRATEGILFC 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              + P +           GRQ     ++ R+I R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSPMAAPG-----FEPGRQSELLVKVNRLIERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF----------QLSQVLKGHVAA 163
           +D  ++  DG    AA     VAL    +       K            +   +      
Sbjct: 134 VDLHLLNHDGNIVDAASIAGIVALCHFRRPDVSVQGKEVTVYSPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +   ++A++ +L +  + N+
Sbjct: 253 ITAVKVAEITELIQKALEND 272


>gi|328948917|ref|YP_004366254.1| polyribonucleotide nucleotidyltransferase [Treponema succinifaciens
           DSM 2489]
 gi|328449241|gb|AEB14957.1| Polyribonucleotide nucleotidyltransferase [Treponema succinifaciens
           DSM 2489]
          Length = 696

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 87/246 (35%), Gaps = 18/246 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR    +R I+    V     GS L   G+T  L   TL    +E+V   I   + 
Sbjct: 313 LRIDGRGTEDIRPITCEVNVLPRPHGSALFTRGETQSLAVTTLGTAMDEQVYDDIEGDRT 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G     E      G R      +  R+L  ++   +     I +  
Sbjct: 373 ENFILHYNFPPYSVG-----EVGKLTTGRREIGHGNLARRSLAPMIPSRSEFPYTIRVVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175
           ++++++G +  A+  G  ++L      M+       +  +  G            Y I+ 
Sbjct: 428 EIMESNGSSSQASTCGGCLSLLAAGVPMKKMVAGIAMGLITDGP-------QYKKYAILS 480

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T  G I   Q   + A  S D     L  AK     ++ + +
Sbjct: 481 DILGEEDHLGDMDFKVAGTRDG-ITGFQMDIKIAGVSMDIMRRALEQAKRGRNHILDIME 539

Query: 236 DVISNE 241
             IS  
Sbjct: 540 KCISKP 545



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 80/222 (36%), Gaps = 26/222 (11%)

Query: 22  KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVKRE 77
           K A G    + G T ++ T     +V           +T EY     + G      VKRE
Sbjct: 23  KQANGCVYAQIGGTAVIATVCASSEV---KEGLDFVPVTVEYNEKFYAAGKIPGGFVKRE 79

Query: 78  AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137
              GR   +   + R+I R +R + + S     QI+  C  I         A+  +  A+
Sbjct: 80  ---GRPKDKEILVSRLIDRPMRPLFETSFGREIQIVPTCVSIDGVNPPDILAVLASSAAV 136

Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197
                                G VA +  G L G  I++  Y +   I ++     T  G
Sbjct: 137 S-------------ISDIPFHGPVAGVRVGYLNGEYILNPTYEQMEKIQLEIVVAGTKDG 183

Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
               V+G A     S++     L  A+  I D+  LQ++++ 
Sbjct: 184 -FTMVEGGANE--VSEEVMLGALEKAQGFITDMCLLQEELVK 222


>gi|296329277|ref|ZP_06871778.1| polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|296153633|gb|EFG94450.1| polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 699

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 91/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
           R+ GR   ++R +     V     GS L   G+T  L   TL  K    + +      + 
Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RAL  V+         I +  +
Sbjct: 384 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGS----LAERALSYVIPTEEEFPYTIRVVSE 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  ++L                   +K HVA I+ G++        
Sbjct: 440 ITESNGSSSQASICGGSLSLMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 486

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T SG I  +Q   +    +++     LN A      +++L
Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITKEIMRIALNQAHQARIQILEL 545

Query: 234 QKDVISNE 241
             + IS  
Sbjct: 546 MNNTISKP 553



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 85/233 (36%), Gaps = 33/233 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + ++   +S+ + G+ ++++GDT LL+TA       +    +     +       G  
Sbjct: 14  RTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLTVDYIEKFYSSGKF 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR    +  + R+I R +R +       +  + I   V+  D    
Sbjct: 74  P---GGFNKRE---GRPSTNATLVARLIDRPIRPMFPDGF--NYDVHIVNTVLSYDEINI 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
                + G+ +AL                     G VA++  G   G  I++    E   
Sbjct: 126 PDYLGVIGSSLAL-------------MISDIPFLGPVASVIVGYKNGEFILNPSPKELEE 172

Query: 185 IDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            ++D     T    ++VE    A      ++     +  A + I  + + Q++
Sbjct: 173 SELDLIVAGTKEAVNMVE----AGAKELDEETMLKAIMFAHENIKKICEFQEE 221


>gi|325142036|gb|EGC64468.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           961-5945]
 gi|325197978|gb|ADY93434.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           G2136]
          Length = 706

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|325129928|gb|EGC52729.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           OX99.30304]
          Length = 706

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|319953765|ref|YP_004165032.1| polyribonucleotide nucleotidyltransferase [Cellulophaga algicola
           DSM 14237]
 gi|319422425|gb|ADV49534.1| Polyribonucleotide nucleotidyltransferase [Cellulophaga algicola
           DSM 14237]
          Length = 747

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 81/233 (34%), Gaps = 26/233 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-------KVPMWIRN 53
           +RL GR+ +++R I           GS +   G+T  L T TL          +P +   
Sbjct: 317 LRLDGRKTDEIRPIWCEIDYLPSTHGSAIFTRGETQALATVTLGTSRDANKIDMPSF--- 373

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
                    Y   P  TG        S R+ G       +  R L+ ++         + 
Sbjct: 374 EGEENFYLHYNFPPFCTGEARPLRGTSRREVGHG----NLAQRGLKGMIPSD--CPYTVR 427

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A +    +AL D    M+   +   +  +  G   A+         
Sbjct: 428 VVSEVLESNGSSSMATVCAGTMALMDAGVKMKRPVSGIAMGLISDGDRYAV--------- 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           + D+   ED   D+D     T  G I   Q   +    S +     L  A+D 
Sbjct: 479 LSDILGDEDHLGDMDFKVTGTSEG-ITACQMDIKIKGLSYEILVNALKQARDG 530



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 73/227 (32%), Gaps = 26/227 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           REIS+      K A GS +V+ G+  LL T      +  V        +    A  G  P
Sbjct: 16  REISIETGKLAKQAHGSVVVQSGNCMLLCTVVSNYKQSDVDFLPLTVDYREKFAAAGRYP 75

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KREA        +    R++ R LR +         Q++I   ++  D     
Sbjct: 76  ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKDYHAETQVMI--QLMSHDENV-- 125

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                    + + +  +   +         +  ++      + G  +++         + 
Sbjct: 126 ---------MPEAMAGLAASAAIQLSDFPFECAISEARVARVNGEFVINPTRA--QLAES 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D   ++  S   V +    E    S++     +  A + I   I  Q
Sbjct: 175 DLEMMIGASADSVMMV-EGEMDEISEEVMADAIKFAHEAIKVQIAAQ 220


>gi|268681650|ref|ZP_06148512.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID332]
 gi|268621934|gb|EEZ54334.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID332]
          Length = 707

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 377 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542

Query: 238 ISNE 241
           ++  
Sbjct: 543 VAGP 546



 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 66/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +    T    ++E    +     +   T   G +P 
Sbjct: 17  VTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERTYAAGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 76  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 131 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 177

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 178 LVVAGTSKAVLM 189


>gi|254493246|ref|ZP_05106417.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           1291]
 gi|268598511|ref|ZP_06132678.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           MS11]
 gi|268603169|ref|ZP_06137336.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID1]
 gi|268683877|ref|ZP_06150739.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           SK-92-679]
 gi|226512286|gb|EEH61631.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           1291]
 gi|268582642|gb|EEZ47318.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           MS11]
 gi|268587300|gb|EEZ51976.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID1]
 gi|268624161|gb|EEZ56561.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           SK-92-679]
          Length = 707

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 377 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542

Query: 238 ISNE 241
           ++  
Sbjct: 543 VAGP 546



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 66/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +    T    ++E    +     +   T   G +P 
Sbjct: 17  VTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERTYAAGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 76  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 131 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 177

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 178 LVVAGTSKAVLM 189


>gi|221194578|ref|ZP_03567635.1| polyribonucleotide nucleotidyltransferase [Atopobium rimae ATCC
           49626]
 gi|221185482|gb|EEE17872.1| polyribonucleotide nucleotidyltransferase [Atopobium rimae ATCC
           49626]
          Length = 733

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 86/245 (35%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMW--IRNTKHG 57
           R+ GR  +++R I +         GS L + G T +L   T  +  +      I      
Sbjct: 319 RVDGRAADEIRPIMVKPDYLPLVHGSGLFQRGQTQVLSICTLGMLNEWQRLDTIEPVDGK 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P  TG   +  +   R+ G       +  RAL  V+         I +  +
Sbjct: 379 RYIHHYNFPPFCTGETGRMGSPKRREIGHG----ALAERALLPVIPSEDEFPYAIRVVSE 434

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           V++++G +  A+  G+ +AL D    +                V+ ++ G++        
Sbjct: 435 VMESNGSSSMASTCGSTLALMDAGVPLVR-------------PVSGVAMGLIQENGKTVV 481

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    + +     L  A +    ++  
Sbjct: 482 LTDIQGLEDFLGDMDFKVTGTTKG-ITAMQMDNKATGLTPEILRQALMQAHEGRMFILNK 540

Query: 234 QKDVI 238
             + I
Sbjct: 541 MLEAI 545



 Score = 78.2 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 80/220 (36%), Gaps = 27/220 (12%)

Query: 22  KYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78
           K A G+C+VK GD+ +L     + E K    +             G +P   G  +KREA
Sbjct: 24  KQATGACVVKCGDSTVLLTAVVSKERKDYDFFPLTVDFIEKMYAVGRIP---GGYLKREA 80

Query: 79  VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138
              R   ++  I RMI R LR           QI+    V        T ++ GA  ALH
Sbjct: 81  ---RPSEKATLIARMIDRPLRPSFPEGFRNEVQIVATSLVADQINAVDTISVMGASAALH 137

Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCGM--LCGYPIVDLDYGEDSTIDVDANFVMTDS 196
                              +G +A +  G     G  +V+  Y E    D+D    +  S
Sbjct: 138 -------------IGGVPYEGPLACVRIGRNSETGEFLVNPTYEERDHSDLDLE--LAGS 182

Query: 197 GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              + +   A     S++   + +   ++ IA   + QK 
Sbjct: 183 ATFISM-LEAGAHEISEEDMLSAMAFGQEAIAAFCEEQKK 221


>gi|150388828|ref|YP_001318877.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus
           metalliredigens QYMF]
 gi|187470924|sp|A6TM00|PNP1_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 1; AltName:
           Full=Polynucleotide phosphorylase 1; Short=PNPase 1
 gi|149948690|gb|ABR47218.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus
           metalliredigens QYMF]
          Length = 702

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 97/249 (38%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +R   R+ +++R IS    +     G+ L   G+T +LT  TL +       +       
Sbjct: 311 IRPDNRKLDEIRPISSEVGILPRTHGTGLFTRGETQVLTVTTLGDLRDAQRIDGLGEEDE 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G        S R+ G       ++ RAL+ ++         I +  
Sbjct: 371 KRYMHHYNFPPYSVGETRFMRGPSRREIGHG----ALVERALKPMIPCKEDFPYAIRLVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V+  +G +  A++ G+ ++L D                 +KG VA I+ G++       
Sbjct: 427 EVLACNGSSSQASVCGSTLSLMDAGV-------------PIKGMVAGIAMGLIKEEGQIA 473

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T++G I  +Q   + A   ++     L  AK     ++ 
Sbjct: 474 ILSDIQGMEDALGDMDLKVAGTENG-ITALQMDIKIAGIDRNIMETALAQAKIGRTHILN 532

Query: 233 LQKDVISNE 241
             K+ I++ 
Sbjct: 533 KMKEAITSP 541



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 27/225 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R   +    V++ A+GSC++K+GDT +L TA      +E +  +  +  +       G +
Sbjct: 12  RPFVVELGKVAELAQGSCMIKYGDTFVLVTACASKEPKEGLDFFPLSCDYEEKLYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE+   R   ++    R+I R +R +         Q+I     +  D    
Sbjct: 72  P---GGFIKRES---RPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATVLSVDQDCPPD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            +A+ G+ +AL                +    G  A++S GM+ G  IV+    +    +
Sbjct: 126 ISAMIGSSIALS-------------VSNIPFMGPTASVSVGMIDGEYIVNPTSEQKELSE 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           ++     T    ++ ++  A     ++      +  A + I  ++
Sbjct: 173 LELIVSGTKDA-VMMIEAGANE--LTEAQILDAIMFAHEEIKKIV 214


>gi|90409343|ref|ZP_01217432.1| polyribonucleotide nucleotidyltransferase [Psychromonas sp. CNPT3]
 gi|90309551|gb|EAS37747.1| polyribonucleotide nucleotidyltransferase [Psychromonas sp. CNPT3]
          Length = 700

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 95/248 (38%), Gaps = 28/248 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R + +   V     GS L   G+T  L TATL  +    I ++  G    
Sbjct: 314 RIDGRDPESVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDSLMGEKKD 373

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P   G      +   R+ G      R+  R + +V+ DL       + +  
Sbjct: 374 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGVLAVMPDLEEFP-YTVRVVS 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ GA +AL D                 LK  VA I+ G++       
Sbjct: 429 EITESNGSSSMASVCGASLALMDAGV-------------PLKASVAGIAMGLVKEGDEFV 475

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 476 VLSDILGDEDHLGDMDFKVAGTSEG-ITALQMDIKIEGITKEIMQIALNQAKAARLHILS 534

Query: 233 LQKDVISN 240
           +  + IS 
Sbjct: 535 VMDEAISE 542



 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 75/234 (32%), Gaps = 35/234 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +    DT +  +       +E+   +     +   T   G +P 
Sbjct: 15  VTLETGVMARQATAAVMCSMDDTCVFVSVVGKQATDEERDFFPLTVNYQEKTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+I     I  +      
Sbjct: 74  --GGFFKRE---GRPSEEETLISRLIDRPVRPLFPAGFKNEVQVIATVVSINPEINPDIV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+     AL                     G +     G + G  +++    E      D
Sbjct: 129 AMIATSAALS-------------ISGMPFNGPIGCARVGYIDGQYLLNPTKTELEAS--D 173

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            N V++ + + V +  S E    S+D     +    +        Q+ V+ + +
Sbjct: 174 LNLVVSGTENAVLMVES-EAGILSEDVMLGAVVYGHE--------QQQVVVSAI 218


>gi|221640608|ref|YP_002526870.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
           KD131]
 gi|254782733|sp|B9KP47|PNP_RHOSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|221161389|gb|ACM02369.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides
           KD131]
          Length = 716

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 95/248 (38%), Gaps = 27/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I     V     GS L   G+T  L   TL       I +  HG   +
Sbjct: 318 RIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVTTLGTGEDEQIIDALHGNSRS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+  +      I +  +
Sbjct: 378 NFLLHYNFPPYSVGEVGRF----GPPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP- 173
           + +++G +  A++ G  +++ D                 LK  VA ++ G++    G   
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEDDGKWA 480

Query: 174 -IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T++G I  +Q   + A  + +     L  AKD    ++ 
Sbjct: 481 VLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEQALAQAKDGRMHILG 539

Query: 233 LQKDVISN 240
                +S+
Sbjct: 540 EMSKALSS 547



 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 76/231 (32%), Gaps = 33/231 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+GS +   G+T ++   T     +     +     +       G +P 
Sbjct: 16  LTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLTVHYQERYYAAGKVP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++   V+  D      
Sbjct: 75  --GGFFKREA---RPSEKETLTSRLIDRPIRPLFVDGF--KNEVLLIVTVLSHDLVNEPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE----D 182
             A+  A  AL                     G + A   G   G  +++ D  +     
Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIGAARVGFAGGEYVLNPDVDDMQKLR 174

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
              +   + V+  +   V +  S E    S+      +    + +  +I +
Sbjct: 175 ENPEQRLDLVIAGTKDAVMMVES-EAYELSEAEMLGAVKFGHEAMQPVIDM 224


>gi|325136018|gb|EGC58628.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M0579]
 gi|325202445|gb|ADY97899.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M01-240149]
 gi|325207803|gb|ADZ03255.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           NZ-05/33]
          Length = 706

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|237742790|ref|ZP_04573271.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           4_1_13]
 gi|256846116|ref|ZP_05551574.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_36A2]
 gi|229430438|gb|EEO40650.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           4_1_13]
 gi|256719675|gb|EEU33230.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_36A2]
          Length = 699

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 92/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
           R+ GR   ++R +     V     GS L   G+T  L   TL  K    + +      + 
Sbjct: 324 RVDGRTTTEIRPLDAQINVLPVPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RAL  V+         I +  +
Sbjct: 384 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGS----LAERALSYVIPSEEEFPYTIRVVSE 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  ++L                   +K HVA I+ G++        
Sbjct: 440 ITESNGSSSQASICGGSLSLMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 486

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T SG I  +Q   +    +++     LN A +    +++L
Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHEARIQILEL 545

Query: 234 QKDVISNE 241
             + IS  
Sbjct: 546 MNNTISKP 553



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 29/231 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + ++   +S+ + G+ ++++GDT LL+TA       +    +     +       G  
Sbjct: 14  RTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKDARKGADFFPLTVDYIEKFYSSGKF 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR    +  + R+I R +R +       +  + I   V+  D    
Sbjct: 74  P---GGFNKRE---GRPSTNATLVARLIDRPIRPMFPDGF--NYDVHIVNTVLSYD---- 121

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                   + + D L  +              G VA++  G   G  I++    E    +
Sbjct: 122 -------EINIPDYLGVIGSSLALMISDIPFLGPVASVIVGYKNGEFILNPSPKELEESE 174

Query: 187 VDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T    ++VE    A      ++     +  A + I  + + Q++
Sbjct: 175 LDLIVAGTKEAVNMVE----AGAKELDEETMLKAIMFAHENIKKICEFQEE 221


>gi|158421687|ref|YP_001522979.1| polynucleotide phosphorylase/polyadenylase [Azorhizobium
           caulinodans ORS 571]
 gi|158328576|dbj|BAF86061.1| polyribonucleotide nucleotidyltransferase [Azorhizobium caulinodans
           ORS 571]
          Length = 756

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 94/244 (38%), Gaps = 18/244 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR    +R I     +   A GS L   G+T  L  ATL         ++  G   
Sbjct: 349 IRIDGRDVKTVRPIVSEVGILPRAHGSALFTRGETQALVVATLGTGEDEQFIDSLEGTYK 408

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R     ++  RA+  ++         + +  
Sbjct: 409 EHFLLHYNFPPFSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPAKHEFPYTLRVVS 464

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A + G  ++L D    ++       +  +L+G   A+         + D
Sbjct: 465 EILESNGSSSMATVCGTSLSLMDAGVPLKSPVAGIAMGLILEGEKFAV---------LSD 515

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T+SG +  +Q   + A  +++     L  AKD  A ++     
Sbjct: 516 ILGDEDHLGDMDFKVAGTESG-VTALQMDIKIAGITEEIMKVALAQAKDGRAHILGEMSK 574

Query: 237 VISN 240
            +++
Sbjct: 575 ALTS 578



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 75/236 (31%), Gaps = 38/236 (16%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + L      + A+G+    +GDT +L T       +     +     +   T   G +
Sbjct: 46  RTLVLETGKMARQADGAVFASYGDTTVLATVVSAREPKPGQDFFPLTVNYQEKTYAAGRI 105

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +   + R+I R +R +         Q+++       +    
Sbjct: 106 P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFADGYKNDTQVVVTVLAHDLENDPD 159

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             ++  A  AL                     G +     G +    +++    E     
Sbjct: 160 VLSMVAASAAL-------------TLSGVPFMGPIGGARVGFVGDEYVLNPTIEELKDSA 206

Query: 187 VDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLN----LAKDRIAD 229
           +D     T S  ++ V+  A+  +         F   HF  ++     LA+    +
Sbjct: 207 LDLVVAGT-SDAVLMVESEAKELSEEVMLGAVMFGHRHFQPVIEAIIRLAEKAAKE 261


>gi|257867115|ref|ZP_05646768.1| polyribonucleotide nucleotidyltransferase [Enterococcus
           casseliflavus EC30]
 gi|257877194|ref|ZP_05656847.1| polyribonucleotide nucleotidyltransferase [Enterococcus
           casseliflavus EC20]
 gi|257801171|gb|EEV30101.1| polyribonucleotide nucleotidyltransferase [Enterococcus
           casseliflavus EC30]
 gi|257811360|gb|EEV40180.1| polyribonucleotide nucleotidyltransferase [Enterococcus
           casseliflavus EC20]
          Length = 720

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 91/247 (36%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GRQ +++R ++    +     GS L   G T  L+  T     E ++   +   + 
Sbjct: 333 IRPDGRQLDEIRPLASEVGLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEES 392

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL  V+         I +  
Sbjct: 393 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQVIPDETDFPYTIRLVA 448

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 449 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 495

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      L+ AK    +++ 
Sbjct: 496 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILN 554

Query: 233 LQKDVIS 239
                ++
Sbjct: 555 ELTSTLA 561



 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 90/233 (38%), Gaps = 28/233 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + +    ++K A G+ LV++GDT +L+ A          ++T    +T  Y     + 
Sbjct: 29  RPLEVEVGQLAKQANGAVLVRYGDTVVLSAAV----ASKEAKDTDFFPLTINYEEKMYAV 84

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G      +KRE   GR    +    R+I R +R +         Q+      ++ D    
Sbjct: 85  GKVPGGFIKRE---GRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVEQDCTPA 141

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ G+ +AL                     G +A +  G + G  +++    +    D
Sbjct: 142 MAAMLGSSLALS-------------ISDIPFDGPIAGVDVGRVNGEYVLNPTVEQAEQTD 188

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ++     T    I  V+  A+    S++     L    D I +L+  Q++V++
Sbjct: 189 IELTVAGTKKA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEVVA 238


>gi|77165581|ref|YP_344106.1| polynucleotide phosphorylase/polyadenylase [Nitrosococcus oceani
           ATCC 19707]
 gi|254433639|ref|ZP_05047147.1| 3' exoribonuclease family, domain 2 [Nitrosococcus oceani AFC27]
 gi|123593842|sp|Q3J9C0|PNP_NITOC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|76883895|gb|ABA58576.1| Polyribonucleotide nucleotidyltransferase [Nitrosococcus oceani
           ATCC 19707]
 gi|207089972|gb|EDZ67243.1| 3' exoribonuclease family, domain 2 [Nitrosococcus oceani AFC27]
          Length = 695

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 92/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I+++  +     GS L   G+T  L   TL  +        I   +  
Sbjct: 315 RIDGRDATAIRPINISTGLLPRTHGSALFTRGETQSLVATTLGTERDAQVIDAIEGERRE 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R+L  VV         I +  +
Sbjct: 375 RFMLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRSLNGVVPDEESFPYVIRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A + G  ++L D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMATVCGTSLSLMDAGV-------------PIKAPVAGIAMGLIKEKDRFAV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   +    +++     L+ A++    +++ 
Sbjct: 478 LSDILGDEDHLGDMDFKVAGTEKG-ITALQMDIKIDGITEEIMRTALSQAREGRFYILQK 536

Query: 234 QKDVISNE 241
             ++IS  
Sbjct: 537 MNEIISTP 544



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 85/235 (36%), Gaps = 28/235 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A G+ +V++G+T +L T        E    +     +   T   G +
Sbjct: 13  RSLVLETGCIARQASGAVVVRYGETVVLVTVVGMKEAAEGRDFFPLTVNYQERTYAAGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +     R+I R LR +   + +   Q+I       ++    
Sbjct: 73  P---GGFFKRE---GRPTEKETLTSRLIDRPLRPLFPKNFINEVQVIATVISSDSENDPD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             ++ GA  AL                       +AA   G + G  +++   G+     
Sbjct: 127 IPSLIGASAALALSGI-------------PFTTPIAAARVGYIDGQYVLNPTLGQMEKSA 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           +D     T+   ++     +E     ++     +  A   +  +I+  ++ ++ E
Sbjct: 174 LDLVVAGTEKAVLMV---ESEAQELPEEIMLGSVMFAHQEMQVVIQAIRE-LAEE 224


>gi|240016088|ref|ZP_04722628.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           FA6140]
          Length = 706

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 65/192 (33%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +    T    ++E    +     +       G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERNYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|327441005|dbj|BAK17370.1| polyribonucleotide nucleotidyltransferase [Solibacillus silvestris
           StLB046]
          Length = 704

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 91/247 (36%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+++++R +S    +   A GS L   G T  L   T  A  + ++   +   + 
Sbjct: 314 VRPDGRKQDEIRPLSSEVDLLPRAHGSALFTRGQTQALSICTLGALGDVQIIDGLGIEES 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RA+ +V+         I    
Sbjct: 374 KRWMHHYNFPQFSVGETGR----YGSPGRREIGHGALGERAILAVMPTEEEFPYAIRCVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +AL                   +K  VA I+ G++       
Sbjct: 430 EVLESNGSTSQASICASTMALMAAGV-------------PIKAPVAGIAMGLVKKGEHYT 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S+D     L  AK     +++
Sbjct: 477 VLSDIQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIDGLSRDILEEALTQAKIGRMHILE 535

Query: 233 LQKDVIS 239
                IS
Sbjct: 536 HMMSTIS 542



 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 88/234 (37%), Gaps = 28/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ ++++G+T +L TAT+    + +  +             G +P
Sbjct: 14  RPLTVEVGQLAKQANGAAMIRYGETAVLATATMSKQPKALDFFPLTVNFEERLYAAGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q I+      ++     
Sbjct: 74  ---GGFIKRE---GRPSEAAVLTSRLIDRPIRPMFPDGFRNEVQSILMVMSNDSNCPADV 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ ++L                     G +A +  G + G  +V+    + +   V
Sbjct: 128 AAMFGSSLSLA-------------ISDIPFDGPIAGVHVGYIEGEFVVNPTVEQSAKSTV 174

Query: 188 DANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                      ++VE    A     ++D     +    + I  LI  Q+ +++ 
Sbjct: 175 HLTVAGNKDAVNMVE----AGALEVTEDIMLEAIMFGHEEIKKLIAFQEQIVAE 224


>gi|159045537|ref|YP_001534331.1| polynucleotide phosphorylase/polyadenylase [Dinoroseobacter shibae
           DFL 12]
 gi|187610298|sp|A8LKE7|PNP_DINSH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157913297|gb|ABV94730.1| polyribonucleotide nucleotidyltransferase [Dinoroseobacter shibae
           DFL 12]
          Length = 711

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 91/248 (36%), Gaps = 27/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  + +R I     +     GS L   G+T  L   TL         +  HG   +
Sbjct: 318 RIDGRALDTVRPIQSEVGILPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+  +      I +  +
Sbjct: 378 NFLLHYNFPPYSVGEVGRF----GPPGRREIGHGKLAWRALQAVLPAATDFPYTIRLVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           + +++G +  A++ G  +++ D                 LK  VA ++ G++        
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEEDGSYA 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T+ G I  +Q   + A  + +     L  AK     ++ 
Sbjct: 481 VLTDILGDEDHLGDMDFKVAGTEEG-ITSLQMDIKVAGITPEIMEKALEQAKAGRLHILG 539

Query: 233 LQKDVISN 240
                +S 
Sbjct: 540 EMSKALSE 547



 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 79/231 (34%), Gaps = 33/231 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A+G  +  +G+T ++   T     +     +     +       G +P 
Sbjct: 16  LTLETGKIARQADGCVIATYGETSVMAAVTYARSQKPGQDFFPLTVHYNEKYYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++ C V+  D      
Sbjct: 75  --GGFFKREA---RPTEKETLTSRLIDRPIRPLFVDGF--KNEVLVICTVLSHDLENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----PIVDLDYGED 182
             A+  A  AL                     G +A    G   G     P+VD  +   
Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIAGARVGYEDGEYVLNPVVDDMHDLR 174

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +  D   + V+  +   V +  S E    S+      +    +++  +I L
Sbjct: 175 NNPDQRLDLVVAGTKDAVMMVES-EAYELSEAEMLGAVKFGHEQMQPVIDL 224


>gi|30021896|ref|NP_833527.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus ATCC
           14579]
 gi|81433861|sp|Q819Z1|PNP_BACCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|29897452|gb|AAP10728.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
           14579]
          Length = 712

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 86/235 (36%), Gaps = 28/235 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG-RALRSVVDLSALGSRQIIID 115
                 Y     S G          R+ G        IG RAL  V+         + + 
Sbjct: 375 KRFMHHYNFPSFSVGETRPMRGPGRREIGHG-----AIGERALEPVIPSEKDFPYTVRLV 429

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++      
Sbjct: 430 SEVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHY 476

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             + D+   ED   D+D     T  G +  +Q   +    S++     L  AK  
Sbjct: 477 TILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVG 530



 Score = 91.7 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|84684402|ref|ZP_01012303.1| polyribonucleotide nucleotidyltransferase [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667381|gb|EAQ13850.1| polyribonucleotide nucleotidyltransferase [Rhodobacterales
           bacterium HTCC2654]
          Length = 716

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 95/247 (38%), Gaps = 27/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR  +Q+R I     +     GS L   G+T  L   TL       + +   G    
Sbjct: 318 RIDGRALDQVRPILAEVGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDALTGTYKS 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+  +      I +  +
Sbjct: 378 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGY-- 172
           + +++G +  A++ G  +++ D              +  LK  VA ++ G++    G   
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDA-------------AVPLKAPVAGVAMGLVLEDDGSYA 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T++G I  +Q   + A  + +     L  AKD    ++ 
Sbjct: 481 VLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKALAQAKDGRMHILG 539

Query: 233 LQKDVIS 239
                +S
Sbjct: 540 EMNKALS 546



 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 80/231 (34%), Gaps = 33/231 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+G+ +   G+T ++   T     +E    +     +       G +P 
Sbjct: 16  LTLETGKVARQADGTVIATLGETSVMANVTFAKQQKEGQDFFPLTVHYQEKYYAAGKVP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++ C V+  D      
Sbjct: 75  --GGFFKREA---RPTEKETLTARLIDRPIRPLFVEGF--KNEVLVMCTVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD----YGED 182
             A+  A  AL                     G +A    G   G  +++      +   
Sbjct: 128 IVAMIAASAALTISGA-------------PFMGPIAGARVGYEDGEYVLNPTCDDMHDLR 174

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +  D   + V+  +   V +  S E    ++      +  A ++I  +I L
Sbjct: 175 NNPDQRLDLVVAGTKDAVMMVES-EAYELTEAEMLGAVTFAHEQIQPVIDL 224


>gi|237841089|ref|XP_002369842.1| 3' exoribonuclease, putative [Toxoplasma gondii ME49]
 gi|211967506|gb|EEB02702.1| 3' exoribonuclease, putative [Toxoplasma gondii ME49]
 gi|221483644|gb|EEE21956.1| 3' exoribonuclease, putative [Toxoplasma gondii GT1]
          Length = 303

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 82/232 (35%), Gaps = 20/232 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  +MR + +       A GS  V  G T L                   G I  
Sbjct: 47  RHDGRRFEEMRAMCMQTHSLAAAAGSAFVSVGKTKLNCAVYGPRPNMKHAS-QDRGSINL 105

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           E+   P +T     ++A S R    +  +  ++ +AL +VV L       I +   V++ 
Sbjct: 106 EFRFAPFAT---TGKDACSER---DTAHLTTLLHQALNAVVRLDLYAKSTIAVSVLVLED 159

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGG  +AA+T   +AL D    M D            GH  +     +    ++D D  E
Sbjct: 160 DGGLISAALTCIGLALADAGIEMLDVVTGASACVFSVGHPDSPPRTCV----LLDPD-AE 214

Query: 182 DSTIDVDANFVMTDSGH------IVEVQGSAERATFSQDHFFAMLNLAKDRI 227
           +     D N    D G+      +  +  S      + +    ML L +   
Sbjct: 215 ERRAFADKNCTFVDLGYCPALASVCFIHASG--TLLATESGEQMLRLCEAAC 264


>gi|254428432|ref|ZP_05042139.1| 3' exoribonuclease family, domain 2 [Alcanivorax sp. DG881]
 gi|196194601|gb|EDX89560.1| 3' exoribonuclease family, domain 2 [Alcanivorax sp. DG881]
          Length = 697

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 85/248 (34%), Gaps = 27/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R I           GS L   G+T  + TATL           +  +   
Sbjct: 316 RIDGRALDAVRAIDCQVGTLAKTHGSALFTRGETQAIVTATLGGMRDAQFIDALEGSHQD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
               +Y   P   G      +   R+ G      R+  R + +VV         + +  +
Sbjct: 376 HFMLQYNFPPYCVGETGFIGSPKRREIGHG----RLARRGVEAVVPSVQDFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           + +++G +  A++ G  +AL D                 L   VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGTSMALMDAGV-------------PLTAPVAGIAMGLVKEEDGRFA 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     LN A      ++ 
Sbjct: 479 VLSDILGDEDHLGDMDFKVAGTARG-VTALQMDIKIEGITEEIMEKALNQANAGRLHILG 537

Query: 233 LQKDVISN 240
                IS 
Sbjct: 538 EMNKAISE 545



 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 80/228 (35%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L    +++ A  + +V+ GDT +L T    ++      +     +T  Y     +TG 
Sbjct: 16  VTLETGQIARQATAAVMVRIGDTEVLVTVVGRKEADP---SKNFFPLTVNYQEKTYATGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                +KRE   GR   +     R+I R +R +     +   Q++        +     A
Sbjct: 73  IPGGFLKRE---GRPSEKETLTCRLIDRPIRPLFPNGFMNEVQVVATVMSSDKNRDPDIA 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G   AL                     G + A   G   G  I++  Y E +   +D
Sbjct: 130 ALIGTSAALSISGI-------------PFNGPIGAARVGYKDGMYILNPSYSELAESALD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T+   ++     +E    S+D     +      +  LI+  K+
Sbjct: 177 LVVAGTEPAVLMV---ESEAQELSEDQMLGAVLFGHMEMQPLIQGIKE 221


>gi|293400548|ref|ZP_06644693.1| polyribonucleotide nucleotidyltransferase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305574|gb|EFE46818.1| polyribonucleotide nucleotidyltransferase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 738

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 92/251 (36%), Gaps = 28/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKH 56
           +R  GR+ +++R +     +     GS L   G+T +L+  TL       I     + ++
Sbjct: 322 VRPDGRKIDEIRPLDSQVDILPRVHGSALFTRGETQVLSVTTLGPMNDNQIIDDVTDVEY 381

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R      +  RAL  V+         I    
Sbjct: 382 KRFMHHYNFPPYSVGETGR----MGNPGRREIGHGALGERALSQVLPSEEEFPYTIRTVA 437

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G +  A+I    ++L                   +K  VA I+ G++       
Sbjct: 438 EVLESNGSSSQASICAGTMSLMAAGV-------------PIKAPVAGIAMGLIMDEDSGK 484

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G I  +Q   + A  ++D F   L+ AK   A +
Sbjct: 485 YTVLTDIQGMEDHFGDMDFKVAGTSEG-ITALQMDIKVAGITEDVFREALSQAKGARAQI 543

Query: 231 IKLQKDVISNE 241
           ++     I   
Sbjct: 544 LENMMTAIDKP 554



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 86/231 (37%), Gaps = 29/231 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+K A GS LV++ DT +L+TAT     +E +  +             G +
Sbjct: 16  RVLTVETGEVAKQAGGSALVRYNDTVVLSTATASKQAKEGIDFFPLTVSFEEKLYSVGKI 75

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  ++RE   GR    +    RMI R +R +         Q++     +  +    
Sbjct: 76  P---GGFLRRE---GRPSEHATLTARMIDRPIRPLFAEGFRNEVQVVNTVLSVDQECTPE 129

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA +AL                     G +A +  G + G  +++    +    D
Sbjct: 130 MTAMFGASLALC-------------VSDIPFNGPIAGVIVGRVDGEYVINPTPEQLEKSD 176

Query: 187 VDANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +      T  + ++VE    A      +D     +    + I  L+  Q++
Sbjct: 177 IHLTVAGTKYAVNMVE----AGAKEVDEDAMLGAIMFGHEHIKKLVAFQEE 223


>gi|218767879|ref|YP_002342391.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
           Z2491]
 gi|187610303|sp|A1IR09|PNP_NEIMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|121051887|emb|CAM08193.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
           meningitidis Z2491]
 gi|319410126|emb|CBY90462.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase; PNPase; CAP87K) [Neisseria meningitidis
           WUE 2594]
          Length = 706

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|187610326|sp|A1B5P9|PNP_PARDP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 715

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 91/248 (36%), Gaps = 27/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I           GS L   G+T  L   TL       I +  HG   +
Sbjct: 318 RIDGRDNKTVRPIDCEVGFLPRTHGSSLFTRGETQALVVTTLGTGDDEQIIDALHGNSRS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+         I +  +
Sbjct: 378 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           + +++G +  A++ G  +++ D                 LK  VA ++ G++        
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEEDGRWA 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T++G I  +Q   + A  + +     L  AKD    ++ 
Sbjct: 481 VLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEQALAQAKDGRLHILG 539

Query: 233 LQKDVISN 240
                +S 
Sbjct: 540 EMSKALSE 547



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 78/232 (33%), Gaps = 35/232 (15%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+GS +   G+T ++   T     +     +     +       G +P 
Sbjct: 16  LTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQEKYYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +          +++ C V+  D      
Sbjct: 75  --GGFFKREA---RPSEKETLTARLIDRPIRPLFVPGFKHE--VLVMCTVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST-- 184
             A+  A  AL                     G +AA   G   G  +++ +  +D    
Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIAAARVGFADGEYVLNPE-VQDMDHL 173

Query: 185 ---IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
               +   + V+  +   V +  S E    ++      +    + +  +I L
Sbjct: 174 RLNPEQRLDLVVAGTRDAVMMVES-EAYELTEAEMLGAVKFGHEAMQPVIDL 224


>gi|224146058|ref|XP_002325864.1| predicted protein [Populus trichocarpa]
 gi|222862739|gb|EEF00246.1| predicted protein [Populus trichocarpa]
          Length = 730

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 89/238 (37%), Gaps = 17/238 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKH 56
           R  GR  +++R I     +   A GS L   G+T  L   TL +K     V   +   + 
Sbjct: 380 RSDGRTPDRIRPIDSRCGILPRAHGSALFTRGETQSLAVVTLGDKQMAQRVDNLVDEEEF 439

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P   G   +  A S R+ G       ++ RAL+ ++         + ++ 
Sbjct: 440 KRFYLQYLFPPSCVGEVGRIGAPSRREIGHGM----LVERALKPILPSDDDFPYTVRVES 495

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175
            + +++G +  A++ G  +AL D    ++       +     G V         G P++ 
Sbjct: 496 TITESNGSSSMASVCGGCLALQDAGVPVKCMIAGIAM-----GMVLDTEEFGGDGTPLIL 550

Query: 176 -DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            D+   ED++ D+D      + G I   Q   +    +       L  A+D    ++ 
Sbjct: 551 SDITGSEDASGDMDFKVAGNEDG-ITAFQMDIKVGGITLPVMRKALLQARDGRQHILA 607



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 82/224 (36%), Gaps = 27/224 (12%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGWITAEYGMLPR 68
           R I +      + A GS  V  G+T + T+  L++ VP    +           +    R
Sbjct: 30  RHILVETGHIGRQASGSVTVTDGETIVYTSVCLDD-VPSEPSDFYPLSVNYQERFSAAGR 88

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126
           ++G   KRE   G+       I R+I R LR  +        QI+    V+  DG     
Sbjct: 89  TSGGFFKRE---GKLKDHEVLICRLIDRPLRPTMFKGFYHETQIL--SWVLSYDGLHSPD 143

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
           + A+T A +A+                       +A +  G++    IV+    E    +
Sbjct: 144 SLAVTAAGIAVA-------------LSEVPNTKVIAGVRVGLVDNKFIVNPTTKEMEESE 190

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           +D     TDS  I  ++G       +++     + + +D +  +
Sbjct: 191 LDLLLAGTDSA-IFMIEG--YCNFLTEEKLLDAVQIGQDAVRAI 231


>gi|194098066|ref|YP_002001114.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998524|ref|ZP_04718448.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           35/02]
 gi|240013649|ref|ZP_04720562.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           DGI18]
 gi|240080230|ref|ZP_04724773.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           FA19]
 gi|240115183|ref|ZP_04729245.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID18]
 gi|240127729|ref|ZP_04740390.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|260440999|ref|ZP_05794815.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           DGI2]
 gi|226702668|sp|B4RK29|PNP_NEIG2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|193933356|gb|ACF29180.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           NCCP11945]
 gi|317163799|gb|ADV07340.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 706

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 66/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +    T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|296114408|ref|ZP_06833062.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295979169|gb|EFG85893.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 710

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 89/247 (36%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I     +   A GS L   G+T  L  ATL       + +   G    
Sbjct: 312 RIDGRDLKTIRPIVSEVGILPRAHGSALFTRGETQALVIATLGTGQDEQVIDALEGEYRT 371

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R    GR   R     ++  RA+  ++         + +  +
Sbjct: 372 NFMLHYNFPPFSVGE-CGRMGSPGR---REIGHGKLAWRAIHPLLPGKDTFPYTMRVVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A + G  +AL D                 LK  VA I+ G++        
Sbjct: 428 ITESNGSSSMATVCGTSLALMDAGV-------------PLKRPVAGIAMGLIKEEEEFAV 474

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G I  +Q   +  + + +     L+ A+     ++  
Sbjct: 475 LSDILGDEDHLGDMDFKVAGTENG-ITALQMDIKITSITPEIMEIALDQARGGRMHILGE 533

Query: 234 QKDVISN 240
               ++ 
Sbjct: 534 MSKALTE 540



 Score = 85.5 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 78/227 (34%), Gaps = 27/227 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ +V +GDT +L TA    +++     +     +       G +
Sbjct: 14  RPLILETGKIARQADGAVVVTYGDTVVLCTAVGAKSVKPGQDFFPLTVNYQEKAYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR         R+I R +R +   +     Q++        +    
Sbjct: 74  P---GGFFKRE---GRPSEAEVLNSRLIDRPIRPLFPDNFRNEVQVVATVLSHDMENDPA 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G   AL                     G V A   G + G  +++    +     
Sbjct: 128 IVALIGCSAAL-------------TLSGVPFFGPVGACRVGYIDGKYVLNPTIAQTKESA 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +D     T+ G ++     +E A  S+      +    +   D+I  
Sbjct: 175 LDLVVAGTEEGVLMV---ESEAAELSEKVMLGAVTFGHEAFQDVIDA 218


>gi|313623917|gb|EFR94027.1| polyribonucleotide nucleotidyltransferase [Listeria innocua FSL
           J1-023]
          Length = 723

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 95/249 (38%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ N++R +S    +     GS L   G T  L+  TL    E ++   +   ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G    R A   R+ G       +  RAL+ V+         I +  
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           +V++++G +  A+I G+ +A+ D                 +K  VA I+ G++       
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S+      L  AK+    +++
Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQIXXXXLTQAKEGRLHILE 537

Query: 233 LQKDVISNE 241
                IS  
Sbjct: 538 HLTSTISEP 546



 Score = 95.5 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 26/230 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69
           +S+    ++K A G+ L+++GDT +LT A           +     +       G +P  
Sbjct: 16  LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KRE   GR   R+    R+I R +R +         QI      +  D     AA
Sbjct: 74  -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ VAL                    +G +A +  G + G  +++    +    D+  
Sbjct: 130 MLGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
               T    I  V+  A+    S++     +    + I  L + Q+ +I+
Sbjct: 177 TVAGTYDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223


>gi|2286200|gb|AAC50039.1| polynucleotide phosphorylase [Pisum sativum]
          Length = 897

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 95/245 (38%), Gaps = 33/245 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56
           R  GR   ++R I+ +  +   A GS L   G+T  L  ATL +     ++   I    +
Sbjct: 444 RSDGRTPKEIRPINSSCSILPRAHGSALFTRGETQALAVATLGDNKMAQRINNLIEVDDY 503

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P   G   +  A S R+ G       +  R+L +++         I ++ 
Sbjct: 504 KRFYLQYSFPPSCVGEAGRIGAPSRREIGHGM----LAERSLETILPSDNDFPYTIRVES 559

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------- 169
            + +++G +  A++ G  +AL D                 +K  +A I+ G++       
Sbjct: 560 TITESNGSSSMASVCGGCLALQDAGV-------------PIKCSIAGIAMGLVLDTKEFG 606

Query: 170 -CGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             G P++  D+   ED++ D+D      + G I   Q   + A  +       L  A+D 
Sbjct: 607 GDGTPLILSDITGSEDASGDMDFKVAGNEDG-ITAFQMDIKVAGITLPIMREALLQARDG 665

Query: 227 IADLI 231
              ++
Sbjct: 666 RKHIL 670



 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 79/226 (34%), Gaps = 31/226 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R   +      + A GS  V  G+T + TT     T  E    +  +  +      +   
Sbjct: 96  RHTLVETGHMGRQASGSVTVTDGETIVYTTVCLNDTPSEPSDFFPLSVNYQE---RFSAA 152

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG-- 124
            R++G   KRE   G+       I R+I R LR  +        QI+    V+  DG   
Sbjct: 153 GRTSGGFFKRE---GKTKDHEVLICRLIDRPLRPTMPKGFYHETQIL--SWVLSYDGSHA 207

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               AIT A +AL                       VA +  G++    IV+    E   
Sbjct: 208 PDALAITAAGIALA-------------LSEIPTSKAVAGVRVGLIGDKYIVNPTAEEMEN 254

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
            ++D     TDS  I+ ++G        ++     + + +D +  +
Sbjct: 255 SELDLMLAGTDSA-ILMIEGYG--NFLPEEKLLKAVEVGQDAVRAI 297


>gi|71083097|ref|YP_265816.1| polynucleotide phosphorylase/polyadenylase [Candidatus Pelagibacter
           ubique HTCC1062]
 gi|123734390|sp|Q4FNM6|PNP_PELUB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|71062210|gb|AAZ21213.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 690

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 86/247 (34%), Gaps = 27/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I     V     GS L   G+T  +   TL    +E+    +      
Sbjct: 313 RIDGRGLADVRAIECEVGVLPRTHGSALFTRGETQAIVVTTLGTSDDEQRLESLDGQHRE 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R     R+ G      ++  RA+ S +           I  +
Sbjct: 373 RFMLHYNFPPFSVGE-TGRIGTGRREVGHG----KLAWRAINSSLPPKEEFPYTFRIVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 428 ITESNGSSSMASVCGASLALMDAGV-------------PIKEPVAGIAMGLIKEGDDFSV 474

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    + +     L  AK+    ++  
Sbjct: 475 LSDILGDEDHLGDMDFKVAGTKDG-ITSLQMDIKITGITFEIMEQALKQAKEGRIHILGE 533

Query: 234 QKDVISN 240
               +S 
Sbjct: 534 MNKALSE 540



 Score = 85.5 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 81/236 (34%), Gaps = 34/236 (14%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
           +ISL    V++ A+G+ +   G+T +L T    +KV      +  +  +       G +P
Sbjct: 15  KISLETGKVARQADGAIIASCGETVILATVVGAKKVNPDMDYFPLSVNYQEKYYAGGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KREA   R     Q I R+I R +R +         Q++        D     
Sbjct: 75  ---GGYFKREA---RPTESEQLISRLIDRPIRPLFPSEFKNEVQLLPTVISYDKDNQPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AIT +  AL                     G V A   G++ G  I++    E     +
Sbjct: 129 LAITASSAALA-------------ISGMPFMGPVGASRVGLVDGKYILNPSKAELENSTL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-------IADLIKLQKD 236
           D     T    ++     +E +  +++     +    +        I +L K  + 
Sbjct: 176 DLVVAGTKDAVLMV---ESETSGLTEEVMLDAVKFGHEGFVPVIEMIEELAKECRK 228


>gi|59800780|ref|YP_207492.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           FA 1090]
 gi|240120719|ref|ZP_04733681.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID24-1]
 gi|268594384|ref|ZP_06128551.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           35/02]
 gi|268596381|ref|ZP_06130548.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           FA19]
 gi|268600863|ref|ZP_06135030.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID18]
 gi|268686120|ref|ZP_06152982.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291044327|ref|ZP_06570036.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           DGI2]
 gi|293399517|ref|ZP_06643670.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           F62]
 gi|75356328|sp|Q5F9Q7|PNP_NEIG1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|59717675|gb|AAW89080.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
           gonorrhoeae FA 1090]
 gi|268547773|gb|EEZ43191.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           35/02]
 gi|268550169|gb|EEZ45188.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           FA19]
 gi|268584994|gb|EEZ49670.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           PID18]
 gi|268626404|gb|EEZ58804.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291011221|gb|EFE03217.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           DGI2]
 gi|291610086|gb|EFF39208.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
           F62]
          Length = 707

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 377 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542

Query: 238 ISNE 241
           ++  
Sbjct: 543 VAGP 546



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 66/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +    T    ++E    +     +   T   G +P 
Sbjct: 17  VTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERTYAAGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 76  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 131 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 177

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 178 LVVAGTSKAVLM 189


>gi|255994504|ref|ZP_05427639.1| polyribonucleotide nucleotidyltransferase [Eubacterium saphenum
           ATCC 49989]
 gi|255993217|gb|EEU03306.1| polyribonucleotide nucleotidyltransferase [Eubacterium saphenum
           ATCC 49989]
          Length = 696

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 86/230 (37%), Gaps = 13/230 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R   R+  ++R I     +   A GS L K G+T +L+ AT     + +V   I     
Sbjct: 315 IRPDDRKRTEVRPIWCDTSILPRAHGSGLFKRGETQVLSAATLGGIGDAQVIDGIGVETE 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      +   R+ G       +  RAL  V+         I +  
Sbjct: 375 KRYMHHYNFPPYSVGEARPIRSPGRREIGHG----ALAERALLPVLPSKEDFPYTIRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           DV+ ++G T  A++ G+ +AL D    ++       +  + +      S   +    + D
Sbjct: 431 DVLSSNGSTSQASVCGSCMALMDAGVPIKAPVAGIAMGLIERVEEDGNSKMAI----LSD 486

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           +   ED   D+D     T  G I  +Q   +    S++     L  A++ 
Sbjct: 487 IQGLEDFLGDMDFKVAGTKEG-ITAIQMDIKVHGLSKEVLSQALEQAREG 535



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 88/235 (37%), Gaps = 31/235 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGML 66
           R + +    V + A G  +VK+GDT +  TAT  EK    +  +  +          G +
Sbjct: 16  RLLEVEIGKVCEKANGQAMVKYGDTVVNVTATASEKPRADIDFFPLSVDFEERMYAAGKI 75

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  ++RE   GR   ++    R+I R +R +         Q++     I  D    
Sbjct: 76  P---GGFIRRE---GRPSEKAILTSRLIDRPIRPLFPKGFYNDVQVVCTAMSIDPDCTPE 129

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
           + A+ G+ +AL                     G  A++  G + G  +V+    + +  +
Sbjct: 130 SVAMIGSSIAL-------------TISDIPWDGPTASVVIGYIDGNYVVNPTQEQRAVSE 176

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI----KLQKDV 237
           +      T    I+ V+  A     S       +  A ++I  ++     +Q++V
Sbjct: 177 LHLVVSGTKDA-IMMVEAGANEVKESV--MLEAILFAHEQIKQIVSFIEDIQREV 228


>gi|91762476|ref|ZP_01264441.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91718278|gb|EAS84928.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 690

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 86/247 (34%), Gaps = 27/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I     V     GS L   G+T  +   TL    +E+    +      
Sbjct: 313 RIDGRGLADVRAIECEVGVLPRTHGSALFTRGETQAIVVTTLGTSDDEQRLESLDGQHRE 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R     R+ G      ++  RA+ S +           I  +
Sbjct: 373 RFMLHYNFPPFSVGE-TGRIGTGRREVGHG----KLAWRAINSSLPPKEEFPYTFRIVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 428 ITESNGSSSMASVCGASLALMDAGV-------------PIKEPVAGIAMGLIKEGDDFSV 474

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    + +     L  AK+    ++  
Sbjct: 475 LSDILGDEDHLGDMDFKVAGTKDG-ITSLQMDIKITGITFEIMEQALKQAKEGRIHILGE 533

Query: 234 QKDVISN 240
               +S 
Sbjct: 534 MNKALSE 540



 Score = 85.5 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 81/236 (34%), Gaps = 34/236 (14%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
           +ISL    V++ A+G+ +   G+T +L T    +KV      +  +  +       G +P
Sbjct: 15  KISLETGKVARQADGAIIASCGETVILATVVGAKKVNPDMDYFPLSVNYQEKYYAGGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KREA   R     Q I R+I R +R +         Q++        D     
Sbjct: 75  ---GGYFKREA---RPTESEQLISRLIDRPIRPLFPSEFKNEVQLLPTVISYDKDNQPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AIT +  AL                     G V A   G++ G  I++    E     +
Sbjct: 129 LAITASSAALA-------------ISGMPFMGPVGASRVGLVDGKYILNPSKAELENSTL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-------IADLIKLQKD 236
           D     T    ++     +E +  +++     +    +        I +L K  + 
Sbjct: 176 DLVVAGTKDAVLMV---ESETSGLTEEVMLDAVKFGHEGFVPVIEMIEELAKECRK 228


>gi|206972738|ref|ZP_03233672.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1134]
 gi|206732338|gb|EDZ49526.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1134]
          Length = 712

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G           QG R      +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPSFSVGETR----PMRGQGRREIGHGALGERALEPVIPSEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I G+ +A+ D                 LK  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICGSTLAMMDAGV-------------PLKAPVAGIAMGLVKTGEHYT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK  
Sbjct: 478 ILSDIQGMEDHLGDMDFKVAGTAQG-VTALQMDIKIDGLSREILEEALQQAKVG 530



 Score = 92.1 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R++++    ++K A G+ LV++GDT +L   TA+ E K V  +     +       G +P
Sbjct: 15  RQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A  + G + G  +++    +    D+
Sbjct: 129 AAMLGSSLALS-------------ISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                 T    I  V+  A++    ++     +    D I  LI  Q++++
Sbjct: 176 HLVVAGTKDA-INMVEAGADQVP--EETMLEAIMFGHDEIKRLIAFQEEIV 223


>gi|257873450|ref|ZP_05653103.1| polyribonucleotide nucleotidyltransferase [Enterococcus
           casseliflavus EC10]
 gi|257807614|gb|EEV36436.1| polyribonucleotide nucleotidyltransferase [Enterococcus
           casseliflavus EC10]
          Length = 705

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 91/247 (36%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GRQ +++R ++    +     GS L   G T  L+  T     E ++   +   + 
Sbjct: 318 IRPDGRQLDEIRPLASEVGLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEES 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL  V+         I +  
Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQVIPDETDFPYTIRLVA 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      L+ AK    +++ 
Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILN 539

Query: 233 LQKDVIS 239
                ++
Sbjct: 540 ELTSTLA 546



 Score = 92.8 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 90/233 (38%), Gaps = 28/233 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + +    ++K A G+ LV++GDT +L+ A          ++T    +T  Y     + 
Sbjct: 14  RPLEVEVGQLAKQANGAVLVRYGDTVVLSAAV----ASKEAKDTDFFPLTINYEEKMYAV 69

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G      +KRE   GR    +    R+I R +R +         Q+      ++ D    
Sbjct: 70  GKVPGGFIKRE---GRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVEQDCTPA 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ G+ +AL                     G +A +  G + G  +++    +    D
Sbjct: 127 MAAMLGSSLALS-------------ISDIPFDGPIAGVDVGRVNGEYVLNPTVEQAEQTD 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ++     T    I  V+  A+    S++     L    D I +L+  Q++V++
Sbjct: 174 IELTVAGTKKA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEVVA 223


>gi|257126208|ref|YP_003164322.1| polynucleotide phosphorylase/polyadenylase [Leptotrichia buccalis
           C-1013-b]
 gi|257050147|gb|ACV39331.1| Polyribonucleotide nucleotidyltransferase [Leptotrichia buccalis
           C-1013-b]
          Length = 700

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 91/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R  GRQ  ++R I +         GS L   G+T  L  ATL    +E++   + +    
Sbjct: 321 RADGRQTTEIRPIDVEIDTLPVPHGSALFTRGETQALVVATLGSKEDEQIIDGMEDETRK 380

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      A   R+ G       +  RAL+ V+         + +  +
Sbjct: 381 KFFLHYNFPPYSVGEAGFMRAPGRRELGHG----NLAERALKYVMPEQDKFPYTVRLVSE 436

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  +AL                   +K  VA I+ G++        
Sbjct: 437 ITESNGSSSQASICGGSLALMAAGV-------------PIKSTVAGIAMGLIKEGDTFTV 483

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     L  A +    +I  
Sbjct: 484 LTDIQGLEDHLGDMDFKVAGTKDG-ITAIQMDIKIEGITREIMEIALRQALEGRLFIIDK 542

Query: 234 QKDVISNE 241
            + VIS  
Sbjct: 543 MEAVISEP 550



 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 84/235 (35%), Gaps = 31/235 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
           +I ++   +++ A GS +V+ G T LL TAT    + E    +     +       G  P
Sbjct: 15  KIKISTGKIARQAGGSVVVQCGGTMLLVTATRSKDVREGQDFFPLTVDYIEKFYASGKFP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125
              G  +KRE    + G     I R+I R +R +     L    + I   V+  D     
Sbjct: 75  ---GGFIKRET---KPGTDEVLISRLIDRPIRPLFPEGFL--NAVHIVVTVLSYDEVNYP 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI G   AL                     G VA ++ G + G  I++    +    
Sbjct: 127 ENLAIIGVSAAL-------------GLSDIPFAGTVAGVTVGYINGEYILNPTGEQLLES 173

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ++  +   T    +  V+  A+    S++     +    ++I ++   Q   +  
Sbjct: 174 EIQLSVAGTKDA-VTMVEAGAKE--VSEEVMLEAIMFGHEKIKEICAEQDKFLEQ 225


>gi|269213998|ref|ZP_05983355.2| polyribonucleotide nucleotidyltransferase [Neisseria cinerea ATCC
           14685]
 gi|269144760|gb|EEZ71178.1| polyribonucleotide nucleotidyltransferase [Neisseria cinerea ATCC
           14685]
          Length = 707

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 94/244 (38%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 377 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L  +  A+         + D+
Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV---------LTDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542

Query: 238 ISNE 241
           ++  
Sbjct: 543 VAGP 546



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 17  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 76  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 131 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 177

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 178 LVVAGTSKAVLM 189


>gi|82750875|ref|YP_416616.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
           RF122]
 gi|117940113|sp|Q2YXP2|PNP_STAAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|82656406|emb|CAI80825.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
           RF122]
          Length = 698

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 94/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R++     +     GS L   G T  L+     A  + ++   +   + 
Sbjct: 318 IRPDGRKPDEIRQLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RAL+ ++  +A     I I  
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALKYIIPDTADFPYTIRIVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G +  A+I G+ +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLVTREDSYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G I  +Q   +    +++     L  A+    +++ 
Sbjct: 481 ILTDIQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREIIEEALEQARRGRLEIMN 539

Query: 233 LQKDVISNE 241
                I   
Sbjct: 540 HMLQTIDQP 548



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 28/232 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ LV++GDT +L+TAT          +     +       G +P
Sbjct: 15  RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR G  +    R+I R +R +         QI+        D   + 
Sbjct: 75  ---GGFKKRE---GRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  I++    E     +
Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRL 175

Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D       D+ ++VE    A  +  ++      +    + I  L+  Q+ ++
Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITEQEMLEAIFFGHEEIQRLVDFQQQIV 223


>gi|241758689|ref|ZP_04756802.1| polyribonucleotide nucleotidyltransferase [Neisseria flavescens
           SK114]
 gi|241320897|gb|EER57110.1| polyribonucleotide nucleotidyltransferase [Neisseria flavescens
           SK114]
          Length = 706

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 94/244 (38%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPEPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L  +  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|187471094|sp|A8IGA3|PNP_AZOC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 724

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 94/244 (38%), Gaps = 18/244 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR    +R I     +   A GS L   G+T  L  ATL         ++  G   
Sbjct: 317 IRIDGRDVKTVRPIVSEVGILPRAHGSALFTRGETQALVVATLGTGEDEQFIDSLEGTYK 376

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R     ++  RA+  ++         + +  
Sbjct: 377 EHFLLHYNFPPFSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPAKHEFPYTLRVVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A + G  ++L D    ++       +  +L+G   A+         + D
Sbjct: 433 EILESNGSSSMATVCGTSLSLMDAGVPLKSPVAGIAMGLILEGEKFAV---------LSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T+SG +  +Q   + A  +++     L  AKD  A ++     
Sbjct: 484 ILGDEDHLGDMDFKVAGTESG-VTALQMDIKIAGITEEIMKVALAQAKDGRAHILGEMSK 542

Query: 237 VISN 240
            +++
Sbjct: 543 ALTS 546



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 75/236 (31%), Gaps = 38/236 (16%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + L      + A+G+    +GDT +L T       +     +     +   T   G +
Sbjct: 14  RTLVLETGKMARQADGAVFASYGDTTVLATVVSAREPKPGQDFFPLTVNYQEKTYAAGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +   + R+I R +R +         Q+++       +    
Sbjct: 74  P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFADGYKNDTQVVVTVLAHDLENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             ++  A  AL                     G +     G +    +++    E     
Sbjct: 128 VLSMVAASAAL-------------TLSGVPFMGPIGGARVGFVGDEYVLNPTIEELKDSA 174

Query: 187 VDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLN----LAKDRIAD 229
           +D     T S  ++ V+  A+  +         F   HF  ++     LA+    +
Sbjct: 175 LDLVVAGT-SDAVLMVESEAKELSEEVMLGAVMFGHRHFQPVIEAIIRLAEKAAKE 229


>gi|294784756|ref|ZP_06750044.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_27]
 gi|294486470|gb|EFG33832.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
           3_1_27]
          Length = 699

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 92/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
           R+ GR   ++R +     V     GS L   G+T  L   TL  K    + +      + 
Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RAL  V+         I +  +
Sbjct: 384 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGS----LAERALSYVIPSEEEFPYTIRVVSE 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  ++L                   +K HVA I+ G++        
Sbjct: 440 ITESNGSSSQASICGGSLSLMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 486

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T SG I  +Q   +    +++     LN A +    +++L
Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHEARIQILEL 545

Query: 234 QKDVISNE 241
             + IS  
Sbjct: 546 MNNTISKP 553



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 89/236 (37%), Gaps = 39/236 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY------- 63
           R + ++   +S+ + G+ ++++GDT LL+TA    +     + +    +T +Y       
Sbjct: 14  RTLKVSTGKISRQSSGAIVIQYGDTVLLSTA---NRSKEARKGSDFFPLTVDYIEKFYSS 70

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD- 122
           G  P   G   KRE   GR    +  + R+I R +R +       +  + I   V+  D 
Sbjct: 71  GKFP---GGFNKRE---GRPSTNATLVARLIDRPIRPMFPDGF--NYDVHIVNTVLSYDE 122

Query: 123 -GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
                   + G+ +AL                     G VA++  G   G  I++    E
Sbjct: 123 INIPDYLGVIGSSLAL-------------MISDIPFLGPVASVIVGYKNGEFILNPSPKE 169

Query: 182 DSTIDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
               ++D     T    ++VE    A      ++     +  A + I  + + Q++
Sbjct: 170 LEESELDLIVAGTKEAVNMVE----AGAKELDEETMLKAIMFAHENIKKICEFQEE 221


>gi|86747731|ref|YP_484227.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
           palustris HaA2]
 gi|123099194|sp|Q2J2J4|PNP_RHOP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|86570759|gb|ABD05316.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris HaA2]
          Length = 718

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 91/241 (37%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I     V   A GS L   G+T  L   TL         ++  G    
Sbjct: 316 RIDGRDSKTVRSIIAEAGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYVDSLAGTYKE 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      ++  RA+R V+         I +  +
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHG----KLAWRAIRPVLPPHHEFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    ++  +    +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   + A  +++     L  AKD    ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTEQG-ITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSKA 541

Query: 238 I 238
           +
Sbjct: 542 L 542



 Score = 85.1 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 81/236 (34%), Gaps = 38/236 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + L    V++ A+G+ +  +G+T +L T     T  E V        +   T   G +
Sbjct: 14  RPLKLETGKVARQADGAVVATYGETIVLATVVAAKTPREGVDFLPLTVDYQEKTYAAGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +   + R+I R +R +         Q+I+       +    
Sbjct: 74  P---GGYFKRE---GRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                    KG + A   G +    +++    E     
Sbjct: 128 ILAMVAASAALTLSGA-------------PFKGPIGAARVGFINDEYVLNPVLDEMPETQ 174

Query: 187 VDANFVMTDSGHIVEVQGSAERAT---------FSQDHF----FAMLNLAKDRIAD 229
           ++     T    ++ V+  A+  +         F   HF     A++ LA+    +
Sbjct: 175 LELVVAGTADA-VLMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIELAEKAAKE 229


>gi|119385483|ref|YP_916539.1| polynucleotide phosphorylase/polyadenylase [Paracoccus
           denitrificans PD1222]
 gi|119375250|gb|ABL70843.1| 3' exoribonuclease [Paracoccus denitrificans PD1222]
          Length = 736

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 91/248 (36%), Gaps = 27/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I           GS L   G+T  L   TL       I +  HG   +
Sbjct: 339 RIDGRDNKTVRPIDCEVGFLPRTHGSSLFTRGETQALVVTTLGTGDDEQIIDALHGNSRS 398

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+         I +  +
Sbjct: 399 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSE 454

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           + +++G +  A++ G  +++ D                 LK  VA ++ G++        
Sbjct: 455 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEEDGRWA 501

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T++G I  +Q   + A  + +     L  AKD    ++ 
Sbjct: 502 VLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEQALAQAKDGRLHILG 560

Query: 233 LQKDVISN 240
                +S 
Sbjct: 561 EMSKALSE 568



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 78/232 (33%), Gaps = 35/232 (15%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+GS +   G+T ++   T     +     +     +       G +P 
Sbjct: 37  LTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQEKYYAAGKIP- 95

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +          +++ C V+  D      
Sbjct: 96  --GGFFKREA---RPSEKETLTARLIDRPIRPLFVPGFKHE--VLVMCTVLSHDLVNDPD 148

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST-- 184
             A+  A  AL                     G +AA   G   G  +++ +  +D    
Sbjct: 149 IVAMIAASAAL-------------TISGVPFMGPIAAARVGFADGEYVLNPE-VQDMDHL 194

Query: 185 ---IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
               +   + V+  +   V +  S E    ++      +    + +  +I L
Sbjct: 195 RLNPEQRLDLVVAGTRDAVMMVES-EAYELTEAEMLGAVKFGHEAMQPVIDL 245


>gi|34763065|ref|ZP_00144038.1| Polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887264|gb|EAA24362.1| Polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 699

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 92/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
           R+ GR   ++R +     V     GS L   G+T  L   TL  K    + +      + 
Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RAL  V+         I +  +
Sbjct: 384 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGS----LAERALSYVIPSEEEFPYTIRVVSE 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  ++L                   +K HVA I+ G++        
Sbjct: 440 ITESNGSSSQASICGGSLSLMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 486

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T SG I  +Q   +    +++     LN A +    +++L
Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHEARIQILEL 545

Query: 234 QKDVISNE 241
             + IS  
Sbjct: 546 MNNTISKP 553



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 85/233 (36%), Gaps = 33/233 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + ++   +S+ + G+ ++++GDT LL+TA       +    +     +       G  
Sbjct: 14  RTLKVSTGKISRQSSGAIVIQYGDTVLLSTANRSKEARKGADFFPLTVDYIEKFYSSGKF 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR    +  + R+I R +R +       +  + I   V+  D    
Sbjct: 74  P---GGFNKRE---GRPSTNATLVARLIDRPIRPMFPDGF--NYDVHIVNTVLSYDEINI 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
                + G+ +AL                     G VA++  G   G  I++    E   
Sbjct: 126 PDYLGVIGSSLAL-------------MISDIPFLGPVASVIVGYKNGEFILNPSPKELEE 172

Query: 185 IDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            ++D     T    ++VE    A      ++     +  A + I  + + Q++
Sbjct: 173 SELDLIVAGTKEAVNMVE----AGAKELDEETMLKAIMFAHENIKKICEFQEE 221


>gi|326388041|ref|ZP_08209645.1| polynucleotide phosphorylase/polyadenylase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207542|gb|EGD58355.1| polynucleotide phosphorylase/polyadenylase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 763

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 88/243 (36%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR   Q+R I           GS L   G+T  + T TL     E++   +    + 
Sbjct: 314 RIDGRTVTQVRPIESIVGFLPRTHGSALFTRGETQTICTTTLGTKDAEQMIDGLDGLTYQ 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G      ++  RAL  V+         I +  D
Sbjct: 374 RFMLHYNFPPYSVGEVGRFGAPGRREIGHG----KLAWRALNPVLPSKEDFPYTIRVLSD 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V +++G +  A + G  ++L D    +    +   +  +L+G              + D+
Sbjct: 430 VTESNGSSSMATVCGGCLSLMDAGVPILRPVSGIAMGLILEGD---------DFTVLSDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   + A  +++ F   L  AK   A ++      
Sbjct: 481 LGDEDHLGDMDFKVAGTSEG-ITSLQMDIKVAGITEEIFRTALAQAKGGRAHILGEMTRA 539

Query: 238 ISN 240
           +  
Sbjct: 540 LGE 542



 Score = 78.6 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 83/233 (35%), Gaps = 31/233 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           ++L    +++ A+G+ L  +G+T +L   T  + V           +T  Y     S   
Sbjct: 16  LTLETGRIARQADGAVLATYGETVVLCAVTAAKSV---KEGQDFFPLTVHYQ-EKFSAAG 71

Query: 73  RVKREAVSGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TA 128
           R+        +G   +E  + R+I R +R +          I +   V+  DG T     
Sbjct: 72  RIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNE--INVIAQVMSYDGETEPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+  A  AL                     G + A   G   G   ++ +  + +   +D
Sbjct: 130 AMIAASAAL-------------TISGVPFLGPIGAARVGFKDGEYQLNPNMAQVAEGRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA----KDRIADLIKLQKDV 237
                TD+  ++ V+  +E    ++D     +  A    +  I  +I+L +  
Sbjct: 177 LVVAATDTA-VMMVE--SEAKELTEDEMLGAVMFAHAESRKVIGAIIELAEKA 226


>gi|284799739|ref|ZP_05984737.2| polyribonucleotide nucleotidyltransferase [Neisseria subflava
           NJ9703]
 gi|284797006|gb|EFC52353.1| polyribonucleotide nucleotidyltransferase [Neisseria subflava
           NJ9703]
          Length = 707

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 94/244 (38%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 317 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 377 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPEPEDFSYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L  +  A+         + D+
Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAV---------LTDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542

Query: 238 ISNE 241
           ++  
Sbjct: 543 VAGP 546



 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 17  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 76  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  I++    E +   +D
Sbjct: 131 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYILNPTKAELAKSQLD 177

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 178 LVVAGTSKAVLM 189


>gi|254303468|ref|ZP_04970826.1| polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148323660|gb|EDK88910.1| polyribonucleotide nucleotidyltransferase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 699

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 92/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
           R+ GR   ++R +     V     GS L   G+T  L   TL  K    + +      + 
Sbjct: 324 RVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLEKEYYK 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RAL  V+         I +  +
Sbjct: 384 KFYLHYNFPPYSVGEVGRMGSPGRRELGHGS----LAERALSYVIPSEEEFPYTIRVVSE 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  ++L                   +K HVA I+ G++        
Sbjct: 440 ITESNGSSSQASICGGSLSLMSAGV-------------PIKEHVAGIAMGLIKEGEEFTV 486

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T SG I  +Q   +    +++     LN A +    +++L
Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKSG-ITALQMDIKITGITEEIMRIALNQAHEARIQILEL 545

Query: 234 QKDVISNE 241
             + IS  
Sbjct: 546 MNNTISKP 553



 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 87/231 (37%), Gaps = 29/231 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + ++   +S+ + G+ ++++GDT LL+TA    +     +      +T +Y     ST
Sbjct: 14  RTLKVSTGKISRQSAGAIVIQYGDTVLLSTA---NRSKEARKGADFFPLTVDYIEKFYST 70

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G       KRE   GR    +  + R+I R +R +       +  + I   V+  D    
Sbjct: 71  GKFPGGFNKRE---GRPSTNATLVARLIDRPIRPMFPDGF--NYDVHIVNTVLSYD---- 121

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                   + + D L  +              G VA++  G   G  I++    E    +
Sbjct: 122 -------EINMPDYLGVIGSSLALMISDIPFLGPVASVIVGYKNGEFILNPSPKELEESE 174

Query: 187 VDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T    ++VE    A      ++     +  A + I  + + Q++
Sbjct: 175 LDLIVAGTKEAVNMVE----AGAKELDEETMLKAIMFAHENIKKICEFQEE 221


>gi|332685840|ref|YP_004455614.1| polyribonucleotide nucleotidyltransferase [Melissococcus plutonius
           ATCC 35311]
 gi|332369849|dbj|BAK20805.1| polyribonucleotide nucleotidyltransferase [Melissococcus plutonius
           ATCC 35311]
          Length = 713

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  L+  T     E ++   +   + 
Sbjct: 324 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGIEES 383

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL  ++         I +  
Sbjct: 384 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALSQIIPSPEAFPYTIRLVA 439

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 440 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 486

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      L  AK    +++ 
Sbjct: 487 ILTDIQGLEDHLGDMDFKVAGTKQG-ITALQMDIKIEGITEQILKEALEQAKKARMEILN 545

Query: 233 LQKDVISNE 241
                ++  
Sbjct: 546 ELTSTLAEP 554



 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 89/237 (37%), Gaps = 29/237 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ L+++GDT +L    A+ E K V  +     +       G +P
Sbjct: 14  RPLQVEVGQLAKQANGAVLIRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKVP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         QI      ++ D     
Sbjct: 74  ---GGFIKRE---GRPSESATLTARLIDRPIRPMFTEGFRNEVQITNIVMSVEQDCSPAM 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  +++    + +  D+
Sbjct: 128 AAMLGSSLAL-------------TISDIPFNGPIAGVEVGRIDGEYVLNPTVEQSNQSDI 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ---KDVISNE 241
           D +   T    I  V+  AE    S+      L      I +L+  Q   +  +  E
Sbjct: 175 DLSVAGTKEA-INMVESGAEE--VSESDMLGALLFGHAAIKELVAFQEEIRQAVGKE 228


>gi|242310417|ref|ZP_04809572.1| nucleotidyltransferase [Helicobacter pullorum MIT 98-5489]
 gi|239522815|gb|EEQ62681.1| nucleotidyltransferase [Helicobacter pullorum MIT 98-5489]
          Length = 714

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 86/246 (34%), Gaps = 30/246 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
           R  GR   ++R IS+       A  S L   G T  L  ATL   +          + + 
Sbjct: 333 RADGRGLKEVRPISIDTNFLPNAHSSVLFTRGQTQALVVATLGGDMDAQSYELLTNKASS 392

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P S G      A   R+ G       +  RAL + +    +  R I + 
Sbjct: 393 KERFMVHYNFPPFSVGEASSISAPGRRELGHG----NLAKRALEASIINGDM--RTIRLV 446

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            ++++++G +  A + G  +AL                       VA ++ G++C     
Sbjct: 447 SEILESNGSSSMATVCGGSLALVAAGI-------------ECTSLVAGVAMGLVCENDKY 493

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     +  G I  +Q   +    +       LN AK+    ++
Sbjct: 494 VVLTDIMGLEDHDGDMDFKVAGSRHG-ITAMQMDIKLGGLNMQILKDALNQAKEARNHIL 552

Query: 232 KLQKDV 237
            L ++ 
Sbjct: 553 NLMEEA 558



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 78/229 (34%), Gaps = 41/229 (17%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72
            +K   GS  ++ G+  +L T  ++ +    +       +T +Y       G  P   G 
Sbjct: 20  FAKQCSGSVYLQSGNNVVLATVAIDTQE---VVEEDFLPLTVQYIEKAYAAGKFP---GG 73

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KREA   + G       R++ R+LR +         QI I   V+ AD          
Sbjct: 74  YIKREA---KPGDFETLSARIVDRSLRPLFPKGYCYPTQITI--LVLSADQD-------- 120

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
              A    L      +  +     L   V+A+  G +    +++    +     +D    
Sbjct: 121 ---ADLQLLALNAASAALYVSEIPLYSPVSAVRIGKIGDNFVINPSLKQLEESSLDLFVS 177

Query: 193 M-TDSGHIVEVQ-----GSAERAT------FSQDHFFAMLNLAKDRIAD 229
              +   ++E++      + E           ++     L +AK+ I+ 
Sbjct: 178 GVNEDLLMIEMRTFGGIKTQEGQAIFSANELQEEEMIEALEIAKNAISQ 226


>gi|224000017|ref|XP_002289681.1| polyribonucleotide nucleotidyltransferase [Thalassiosira pseudonana
           CCMP1335]
 gi|220974889|gb|EED93218.1| polyribonucleotide nucleotidyltransferase [Thalassiosira pseudonana
           CCMP1335]
          Length = 721

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 92/246 (37%), Gaps = 16/246 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHG 57
           R+ GR+ N++R I     +     GS L   G+T ++ TATL +         I   +  
Sbjct: 282 RIDGRKLNEVRVIDSEAGLFPRVHGSALFTRGETQVVATATLGDSGMRQKIDRISGMEEK 341

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
               +Y   P   G   +  A   R+ G       +  RAL   +   A     I ++  
Sbjct: 342 RFYLQYTFPPSCVGETGRVGAPGRREVGHG----NLAERALVPTLPSEADFPYAIRVESL 397

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL--KGHVAAISCGMLCGYPIV 175
           V +++G +  A++ G  +AL D    ++       +  +L  KG V+  +  ++      
Sbjct: 398 VTESNGSSSMASVCGGCLALMDAGVPIKSPIAGIAMGMLLGDKGGVSDENAVIVS----- 452

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED+   +D        G I   Q   +    + +     L+ AK+    ++   +
Sbjct: 453 DILGTEDALGTMDFKVAGNKEG-ITTFQLDIKCEGLTLETMKKALDQAKEGRLHILGEME 511

Query: 236 DVISNE 241
             +   
Sbjct: 512 KALKEP 517



 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 62/170 (36%), Gaps = 25/170 (14%)

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            +     ++G   KR+   GR       + R+I R LR ++        Q++    ++  
Sbjct: 33  RFSSAGTTSGAFNKRD---GRPAEHEILVCRLIDRPLRPLIAEGWRHETQLL--SWILSY 87

Query: 122 DGGTRT---AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           DG  RT    AIT +  AL      + D          L   VAA   G + G  +++  
Sbjct: 88  DG-VRTCDPLAITASAAAL-----WLSDV--------PLLKPVAAAMVGYIDGQLVLNPT 133

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
             +     ++     T    ++ ++G+A+     +D     +    + I 
Sbjct: 134 VEQMKHSRLNLTVAGTKEA-VLMIEGAAD--FLPEDLMVEAVTFGHEAIK 180


>gi|92115668|ref|YP_575397.1| polynucleotide phosphorylase/polyadenylase [Nitrobacter
           hamburgensis X14]
 gi|91798562|gb|ABE60937.1| Polyribonucleotide nucleotidyltransferase [Nitrobacter hamburgensis
           X14]
          Length = 748

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 92/243 (37%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I     V   A GS L   G+T  +   TL           +  T   
Sbjct: 344 RIDGRDAKTVRNILAEVGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDALSGTYKE 403

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      ++  RA+  V+         I +  +
Sbjct: 404 TFLLHYNFPPYSVGETGRLGSTKRREIGHG----KLAWRAIHPVLPPHHEFPYTIRVVSE 459

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA ++L D    ++  +    +  +L+G   A+         + D+
Sbjct: 460 ITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGSRYAV---------LSDI 510

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   + A  +++     L  A++    ++      
Sbjct: 511 LGDEDHLGDMDFKVAGTEVG-ISSLQMDIKIAGITEEIMKVALAQAREGRIHILGEMAKA 569

Query: 238 ISN 240
           ++N
Sbjct: 570 LTN 572



 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 80/238 (33%), Gaps = 42/238 (17%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ +  +G+T +L T     T  E V        +   T   G +
Sbjct: 42  RPLKLETGKIARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLTVDYQEKTYAAGRI 101

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +   + R+I R +R +         Q+I+       +    
Sbjct: 102 P---GGYFKRE---GRPSEKETLVSRLIDRPVRPLFADGWRNETQVIVTVLSHDMENDPD 155

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                    +G + A   G +    +++    E   +D
Sbjct: 156 VLAMVAASAALTLSGA-------------PFRGPIGAARVGFMNDEYVLNPTLDE--MVD 200

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHF---------------FAMLNLAKDRIAD 229
                V+  +   V +  S E    S+D                  A++ LA+    +
Sbjct: 201 TQLELVVAGTADAVLMVES-EAKELSEDIMLGAVMFGHRHFQPVINAIIELAEKAAKE 257


>gi|257063808|ref|YP_003143480.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Slackia heliotrinireducens DSM 20476]
 gi|256791461|gb|ACV22131.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Slackia heliotrinireducens DSM 20476]
          Length = 743

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 91/242 (37%), Gaps = 28/242 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMWIR---NTKH 56
           R  GR  +++R + +         GS L + G T  L   T  L  +          T  
Sbjct: 315 RADGRAADEIRPLYIRPGYLPRVHGSGLFQRGQTQALSVCTLGLLNEAQRLDTIDPATGK 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++  +Y   P  TG   +  A   R+ G       +  RA+  V+         I +  
Sbjct: 375 RYMH-QYNFPPYCTGEVGRMGAPKRREVGHG----ALAERAILPVLPSEDEFPYAIRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++++++G +  A+  G+ +AL D                 +K  V+ I+ G++    G  
Sbjct: 430 EILESNGSSSMASTCGSCLALMDAGV-------------PIKAPVSGIAMGLIKEEDGVV 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           I+ D+   ED   D+D     T +G I  +Q   +    S +     L  AK+  A ++ 
Sbjct: 477 ILSDIQGLEDFLGDMDFKVTGTANG-ITALQMDNKARGLSTEILGRALQQAKEGRAHILN 535

Query: 233 LQ 234
             
Sbjct: 536 AM 537



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 79/230 (34%), Gaps = 28/230 (12%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRSTG 71
                ++K A G+ LVK G+T +L TA +   E+    +             G +P   G
Sbjct: 17  FETGELAKQATGAVLVKQGETTVLVTAVISAQEKDYDFFPLTVDFMEKMYAVGRIP---G 73

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
             +KRE   G+   +     RMI R +R            ++     I          + 
Sbjct: 74  GYLKRE---GKASDKGTLTARMIDRPIRPGFADGFKQEVHVVATTFAIDGQNPPDCICVG 130

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG--MLCGYPIVDLDYGEDSTIDVDA 189
           GA  AL                S    G  A +           IV+  Y E  T D++ 
Sbjct: 131 GASAAL-------------MIGSAPFDGPAACVRIARNAETKEFIVNPTYEEQETSDLEL 177

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
               T   +I  V+  A     +++   A +N  ++ IA   + Q + ++
Sbjct: 178 TIAGTRD-YISMVEAGANE--VTEEDMLAAMNFGQEAIAAFCEKQAEFLA 224


>gi|283769562|ref|ZP_06342458.1| polyribonucleotide nucleotidyltransferase [Bulleidia extructa
           W1219]
 gi|283103830|gb|EFC05216.1| polyribonucleotide nucleotidyltransferase [Bulleidia extructa
           W1219]
          Length = 732

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 85/245 (34%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +R  GR  +++R +     +     GS L   G+T +L+  TL       + +     + 
Sbjct: 318 IRPDGRALDELRSLDSQVDLLPRVHGSALFTRGETQVLSVTTLGPLSDAQMMDDLGMEEE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +     G  G R      +  RAL  V+         I    
Sbjct: 378 KRFMHQYNFPPFSVGEVGR----MGSPGRREIGHGALGERALAQVLPSEEEFPYAIRTSA 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G +  A+I    ++L      ++       +  +  G   ++         + D
Sbjct: 434 EVLESNGSSSQASICAGTMSLMAAGVPIKAMVAGVAMGLITVGDTYSV---------LTD 484

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I  +Q   +    SQD     L  A      ++   + 
Sbjct: 485 IQGMEDHYGDMDFKVAGTREG-ITALQMDIKVTGISQDILREALAQAHKGRMQILDNMEA 543

Query: 237 VISNE 241
            I+  
Sbjct: 544 CIAEP 548



 Score = 88.6 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 92/231 (39%), Gaps = 26/231 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLPRS 69
           I++    ++K A GS +V++ DT +L+TAT   +      +     +       G +P  
Sbjct: 15  ITVENGEIAKQAGGSVVVRYNDTTILSTATASSQAKDTDFFPLTVLYQEKMYAAGKIP-- 72

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  ++RE   GR    +    R+I R +R +         Q++        D  +  A+
Sbjct: 73  -GGFLRRE---GRPSEHATLTARLIDRPIRPLFAEGFRNEVQVVNTVLSNDPDASSEMAS 128

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ +AL                     G VA +    + G  +++    E++  D+  
Sbjct: 129 LFGSSLALC-------------ISDIPFNGPVAGVQVVRVNGEFLINPSVEENAKGDLHL 175

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
               T    I  V+  A+    S++   A L    + I  L ++Q++VI++
Sbjct: 176 TVAGTKQA-INMVEAGAKE--VSEETMLAALQFGHEAIQKLCEIQEEVIAS 223


>gi|253997787|ref|YP_003049850.1| polynucleotide phosphorylase/polyadenylase [Methylovorus sp.
           SIP3-4]
 gi|313199851|ref|YP_004038509.1| polyribonucleotide nucleotidyltransferase [Methylovorus sp. MP688]
 gi|253984466|gb|ACT49323.1| Polyribonucleotide nucleotidyltransferase [Methylovorus sp. SIP3-4]
 gi|312439167|gb|ADQ83273.1| Polyribonucleotide nucleotidyltransferase [Methylovorus sp. MP688]
          Length = 707

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 97/247 (39%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I++   V     GS L   G+T  L  ATL    +E++   ++     
Sbjct: 315 RIDGRNTRTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDALQGEYTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +      R+ G  +  +R +     + +         I +  +
Sbjct: 375 RFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRALL----AALPSQEEFGYTIRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K HVA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGV-------------PVKTHVAGIAMGLIKEGNRVAV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     ++ G I  +Q   +    + +   A L  AK+    ++ L
Sbjct: 478 LTDILGDEDHLGDMDFKVAGSEDG-ITALQMDIKITGITAEIMQAALAQAKEGRLHILGL 536

Query: 234 QKDVISN 240
            K+ +  
Sbjct: 537 MKEAMGE 543



 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 86/234 (36%), Gaps = 38/234 (16%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
           E++L    +++ A+G+ +V +GDT +L T   +  V      +     +   T   G +P
Sbjct: 14  ELTLETGEIARQADGAVMVSYGDTVVLVTVVGKTDVKPGQDFFPLTVDYQERTYAAGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR   +     R+I R LR +   +     QI+       ++  +  
Sbjct: 74  ---GGFFKRE---GRPSEKETLTSRLIDRPLRPLFPEAFYNEVQIVATVMSSDSEIDSDI 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AI GA  AL                     G + A   G + G  +++    +    ++
Sbjct: 128 PAIIGASAALAISGI-------------PFYGPIGAARVGYINGEYVLNPTATQLKDTEL 174

Query: 188 DANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLNLAKDRIADLIK 232
           D     T +  ++ V+  A+            +  +   A++NL    I ++  
Sbjct: 175 DLVVAATSTA-VLMVESEAKELPEDVMLGSVVYGHEQMQAVINL----INEIAA 223


>gi|223040232|ref|ZP_03610510.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Campylobacter
           rectus RM3267]
 gi|222878485|gb|EEF13588.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Campylobacter
           rectus RM3267]
          Length = 735

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 90/243 (37%), Gaps = 22/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGW 58
           +R  GR    +R IS+   +   A GSCL   G T  L  ATL  +    M+   T+ G 
Sbjct: 342 VRADGRGLKDVRPISIETNILPNAHGSCLFTRGQTQALVVATLGTDGDAQMYDMLTEKGA 401

Query: 59  IT----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +T      Y     S G     +A   R+ G       +  RAL   +D  +     I +
Sbjct: 402 VTDKFMFNYNFPGFSVGEASPLKAPGRRELGHG----NLAKRALAPSIDSDS--PYTIRL 455

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++++++G +  A++ G  +AL               +  + +G   A+         +
Sbjct: 456 VSEILESNGSSSMASVCGGSLALRAAGVDTPKLVAGVAMGLIFEGEKHAV---------L 506

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED   D+D     +  G I  +Q   +    S D     L  A +    ++ L 
Sbjct: 507 TDIMGLEDHDGDMDFKVAGSKDG-ITALQMDIKLGGISLDVLKEALLQACEGRLHILNLM 565

Query: 235 KDV 237
           +  
Sbjct: 566 ETA 568



 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 81/253 (32%), Gaps = 50/253 (19%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
           V+K A G+ L++  +T +L T   E+            ++   T   G +P   G  VKR
Sbjct: 19  VAKQASGAALLRVKNTVVLATVAREDTQVSEDFLPLTVQYIEKTYAAGRIP---GGYVKR 75

Query: 77  EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
           E    + G       R+I R+LR +         QI++       +   +  A+  A VA
Sbjct: 76  ET---KPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVMVLSCDPEVDLQVVALNAASVA 132

Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE--------------D 182
           L+                  +   V  +  G +    +++    E              D
Sbjct: 133 LY-------------LSDIPVNAPVCGVRVGYIDNKFVINPSNSELKTSALDLYVAGVKD 179

Query: 183 STIDVDANFVMTDSGHIV--------------EVQGSAERATFSQDHFFAMLNLAKDRIA 228
             + ++   + T    ++              EV  + +   FS+D     +  A   I 
Sbjct: 180 ELLMIEMRSIATQKDEMMPIALDPMMDPNLGGEVIATQDMNEFSEDLIVEAIAEAGKAIL 239

Query: 229 DLIKLQKDVISNE 241
                 ++  S  
Sbjct: 240 RASNAYEEAFSQH 252


>gi|149913069|ref|ZP_01901603.1| hypothetical protein RAZWK3B_03735 [Roseobacter sp. AzwK-3b]
 gi|149813475|gb|EDM73301.1| hypothetical protein RAZWK3B_03735 [Roseobacter sp. AzwK-3b]
          Length = 712

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 95/248 (38%), Gaps = 27/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  + +R+I     +     GS L   G+T  L   TL       I +  HG   +
Sbjct: 319 RIDGRSLDTVRQIVSETGLLPRTHGSALFTRGETQALVVTTLGTGDDEQIIDALHGNFRS 378

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+         I +  +
Sbjct: 379 NFLLHYNFPPYSVGEAGR----VGPPGRREVGHGKLAWRALQAVLPAPTDFPYTIRVVSE 434

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGY-- 172
           + +++G +  A++ G  +++ D                 LK  VA ++ G++    G   
Sbjct: 435 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEDDGEYA 481

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T+ G I  +Q   + A  + +     L  AKD    ++ 
Sbjct: 482 VLTDILGDEDHLGDMDFKVAGTEKG-ITSLQMDIKVAGITPEIMKKALAQAKDGRLHILN 540

Query: 233 LQKDVISN 240
              + ++ 
Sbjct: 541 EMSNALTE 548



 Score = 78.2 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 80/232 (34%), Gaps = 35/232 (15%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+GS +   G+T ++   T     +     +     +       G +P 
Sbjct: 17  LTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQEKYYAAGKVP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +          +++ C V+  D      
Sbjct: 76  --GGFFKREA---RPTEKETLTARLIDRPIRPLFVSGFKHE--VLVMCTVLSHDLVNDPD 128

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST-- 184
             A+  A  AL                     G +A    G   G  I++ D  ED    
Sbjct: 129 IVAMIAASAALTISGA-------------PFMGPIAGCRVGYSDGEYILNPD-VEDMHDL 174

Query: 185 ---IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
               D   + V+  +   V +  S E    S+D     +  A ++I  +I L
Sbjct: 175 RNNPDQRLDLVVAGTKDAVMMVES-EAYELSEDEMLGAVTFAHEQIQPVIDL 225


>gi|119944587|ref|YP_942267.1| polynucleotide phosphorylase/polyadenylase [Psychromonas ingrahamii
           37]
 gi|187611274|sp|A1ST53|PNP_PSYIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|119863191|gb|ABM02668.1| Polyribonucleotide nucleotidyltransferase [Psychromonas ingrahamii
           37]
          Length = 698

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 89/247 (36%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R + +   V     GS L   G+T  L TATL  +        I   K  
Sbjct: 314 RIDGRDPESIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDSIMGEKKD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 374 NFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGVLAVMPSLEEFPYTVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 LK  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PLKASVAGIAMGLVKEGEEFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTTEG-ITALQMDIKIEGITREIMQIALNQAKAARLHILTV 535

Query: 234 QKDVISN 240
               +  
Sbjct: 536 MDQALPQ 542



 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 75/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +    DT +  +   +     +   +     +   T   G +P 
Sbjct: 15  VTLETGVMARQATAAVMCSMDDTCVFVSVVGKNADNQERDFFPLTVNYQEKTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+I     I  +      
Sbjct: 74  --GGFFKRE---GRPSEDETLIARLIDRPVRPLFPAGFKNEVQVIATVVSINPEVNPDVV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+     AL                    KG +     G   G  +++    E  T   D
Sbjct: 129 AMIATSAALS-------------ISGMPFKGPIGCARVGYKEGEYLLNPTKTELETS--D 173

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            N V++ + + V +  S E    S+D     +    D+   +++  K+
Sbjct: 174 LNLVVSGTDNAVLMVES-EAGILSEDVMLGAVVFGHDQQQIVVESIKE 220


>gi|332298592|ref|YP_004440514.1| Polyribonucleotide nucleotidyltransferase [Treponema brennaborense
           DSM 12168]
 gi|332181695|gb|AEE17383.1| Polyribonucleotide nucleotidyltransferase [Treponema brennaborense
           DSM 12168]
          Length = 699

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 89/246 (36%), Gaps = 18/246 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R+ GR    +R IS    V     GS +   G+T  L  AT    L+E+V   I   + 
Sbjct: 313 VRVDGRGTEDIRPISCEIDVLPRPHGSAIFTRGETQSLAVATLGTALDEQVYDDIDGDRR 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G  V R     R+ G       +  R+L  +V         I +  
Sbjct: 373 EHFILHYNFPPYSVGE-VGRMGTGRREIGHG----NLARRSLEPMVPSREAFPYTIRVVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175
           ++++++G +  A++ G  + +      M+       +  + +G            Y I+ 
Sbjct: 428 EIMESNGSSSMASVCGGTLCMLAAGVPMKKPVAGIAMGLITEGD-------KYEKYAILS 480

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T  G I   Q   + A  + +     L  AK     ++ +  
Sbjct: 481 DILGEEDHLGDMDFKVAGTADG-ITGFQMDIKIAGVTTEIMQKALAQAKRGRLHILGIMN 539

Query: 236 DVISNE 241
             IS  
Sbjct: 540 QTISKP 545



 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 82/219 (37%), Gaps = 26/219 (11%)

Query: 22  KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKRE 77
           K A G+   +FG + ++ TA    T +E +        +       G +P   G  +KRE
Sbjct: 23  KQANGAVYAQFGGSAVIATACASGTAQEGLDFVPVTVDYNEKYYAAGKIP---GGFIKRE 79

Query: 78  AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137
              GR   +   + R+I R +R + +++     QI+  C             ++   +  
Sbjct: 80  ---GRPKDKEILVSRLIDRPMRPLFEVAFGREIQIVPTC-------------VSSDQINP 123

Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197
            D L  +   +          G +A +    + G  +++  Y +    +++     T  G
Sbjct: 124 PDMLAVVASSAAVVISDIPFNGPIAGVRVAYVDGDYVLNPTYAQIEKAELEIVVAGTADG 183

Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
               V+G A     S+D     L  A++ I  +  LQ +
Sbjct: 184 -FTMVEGGANE--VSEDVMLGALAKAQEFITAMCGLQNE 219


>gi|124515695|gb|EAY57204.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum rubarum]
          Length = 713

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 92/244 (37%), Gaps = 18/244 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  + +R I++   +     GS L   G+T  L+ ATL         +   G  T
Sbjct: 319 VRADGRGLSDIRPITIEVGILPRTHGSALFTRGETQSLSVATLGTSDDEQRIDALEGEST 378

Query: 61  ----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G          R+ G       +  RAL+ V+         I +  
Sbjct: 379 KRFMLHYNFPPFSVGETKPMRGPGRREIGHG----NLAERALKPVLPARDSFPYSIRLVS 434

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           D+++++G +  A + G  +A+ D    ++       +  + +G   AI         + D
Sbjct: 435 DILESNGSSSMATVCGGSLAMMDAGIPIKSAVAGIAMGLIKEGDRIAI---------LSD 485

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T++G I  VQ   +    + +     L  A++    +++  K 
Sbjct: 486 ILGLEDHLGDMDFKVTGTENG-ITAVQMDIKITGITVELMRESLQKAREGRLYIMEKMKM 544

Query: 237 VISN 240
            + +
Sbjct: 545 ALPS 548



 Score = 96.7 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 81/228 (35%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           + L      K A+GS +V    T ++ TA      +  V        +       G +P 
Sbjct: 15  VRLETGRMAKQADGSVVVWADGTVVIATAVASKVSKPGVDFLPLTVDYQERAYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+   R     R+I R LR +         Q+I     I   G +   
Sbjct: 74  --GGFFKRE---GKPSEREILNSRLIDRPLRPLFPEGFFFDTQLIASVISIDRGGISDVM 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+  +  AL+                      VAA+  G + G  IV+    E     +D
Sbjct: 129 AVVASSAALY-------------VSDIPFMNPVAAVKVGCVDGTFIVNPTLDEQERSTLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T    I+ V+G  +    S++ F + ++LA   I  LI+ Q+ 
Sbjct: 176 LVVAGTRDA-IMMVEG--QGNEISEETFLSAIDLAHKSILPLIEAQEK 220


>gi|110678016|ref|YP_681023.1| polynucleotide phosphorylase/polyadenylase [Roseobacter
           denitrificans OCh 114]
 gi|123065912|sp|Q16CF6|PNP_ROSDO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|109454132|gb|ABG30337.1| polyribonucleotide nucleotidyltransferase [Roseobacter
           denitrificans OCh 114]
          Length = 711

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 91/234 (38%), Gaps = 27/234 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +++R+I     +     GS L   G+T  L   TL         +  HG   +
Sbjct: 318 RIDGRKTDEIRDIVCETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+  +      + +  +
Sbjct: 378 NFLLHYNFPPYSVGEAGR----VGPPGRREIGHGKLAWRALQAVLPAATDFPYTVRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           + +++G +  A++ G  +++ D                 LK  VA ++ G++        
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEEDGSYA 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED   D+D     T++G I  +Q   + A  + +     L  AK  
Sbjct: 481 ILSDILGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITPEIMEKALEQAKAG 533



 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 78/234 (33%), Gaps = 39/234 (16%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+GS +   G+T ++   T     +     +     +       G +P 
Sbjct: 16  LTLETGKVARQADGSVIATLGETSVMANVTFAKKQKPGQDFFPLTVHYQEKYYAAGKVP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R LR +         ++++ C V+  D      
Sbjct: 75  --GGFFKREA---RPTEKETLTARLIDRPLRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                     G +A    G   G  I++     D   D
Sbjct: 128 MVAMIAASAALTISGA-------------PFMGPIAGARVGFEDGEYILNPTV--DDMQD 172

Query: 187 VDAN-------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +  N        V      ++ V+  +E    S+      +  A D I  ++ L
Sbjct: 173 LRLNPEQRLDLVVAGTKDAVMMVE--SEAYELSEAEMLGAVKFAHDAIQPVLDL 224


>gi|221504332|gb|EEE30007.1| 3' exoribonuclease, putative [Toxoplasma gondii VEG]
          Length = 303

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 81/230 (35%), Gaps = 16/230 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  +MR + +       A GS  V  G T L                   G I  
Sbjct: 47  RHDGRRFEEMRAMCMQTHSLAAAAGSAFVSVGKTKLNCAVYGPRPNMKHAS-QDRGSINL 105

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           E+   P +T     ++A S R    +  +  ++ +AL +VV L       I +   V++ 
Sbjct: 106 EFRFAPFAT---TGKDACSER---DTAHLTTLLHQALNAVVRLDLYAKSTIAVSVLVLED 159

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGG  +AA+T   +AL D    M D            GH  +     +    ++D D  E
Sbjct: 160 DGGLISAALTCIGLALADAGIEMLDVVTGASACVFSVGHPDSPPRTCV----LLDPD-AE 214

Query: 182 DSTIDVDANFVMTDSGHIVEVQG----SAERATFSQDHFFAMLNLAKDRI 227
           +     D N    D G+   +       A     + +    ML L +   
Sbjct: 215 ERRAFADKNCTFVDLGYCPALASVCFIRASGTLLATESGEQMLRLCEAAC 264


>gi|189485170|ref|YP_001956111.1| polyribonucleotide nucleotidyltransferase [uncultured Termite group
           1 bacterium phylotype Rs-D17]
 gi|226704829|sp|B1GZG8|PNP_UNCTG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|170287129|dbj|BAG13650.1| polyribonucleotide nucleotidyltransferase [uncultured Termite group
           1 bacterium phylotype Rs-D17]
          Length = 689

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 91/249 (36%), Gaps = 30/249 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI- 59
           +R  GR   ++R I+    V     GS L   G T  L T TL    P  ++      + 
Sbjct: 310 IRTDGRGFEEIRPITCETGVLPRVHGSSLFTRGQTQALVTVTL--GSPCDMQVIDELIVE 367

Query: 60  -----TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y     +TG   +  AVS R+ G       +  +AL+ ++         + I
Sbjct: 368 YKERFMLHYNFPGFATGEPKRDRAVSRREIGHG----NLAKKALKHIMPDGEDFGYAVRI 423

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             D+++++G +  A++ G  +AL +                 +K   A +S G++     
Sbjct: 424 VSDILESNGSSSMASVCGGSLALFNAGV-------------PVKSSCAGVSMGLMKEGGS 470

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G I  +Q   +    + +     L  AK     +
Sbjct: 471 YVILTDITGMEDHLGDMDFKVAGTRKG-ITALQMDIKILGLTTEIVAQALEQAKRGRFFI 529

Query: 231 IKLQKDVIS 239
           +     V+S
Sbjct: 530 LDQMDAVVS 538



 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 78/228 (34%), Gaps = 42/228 (18%)

Query: 20  VSKYAEGSCLVKFGDT------------HLLTTATLEEKVPMWIRNTKHGWITAEYGMLP 67
           V+K A GSC V+ G+T             +         +        +   T   G +P
Sbjct: 22  VAKQAGGSCTVRIGETVVLVTVVSLKEPKV--------GIDFMPLTVDYRERTYAAGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE  +  + G    + R+I R++R +         QI         +  +  
Sbjct: 74  ---GGFFKRE--TRPRDG-EVLVSRLIDRSIRPLFPEYYRNDTQISAVVLSHDGENDSEM 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AAI GA +AL+                      +A++  G + G  I++    E    D+
Sbjct: 128 AAILGASIALY-------------TSDLPFTTPIASVRIGKINGQLIINPLIAEQKLSDL 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D     T+   +  V+  A     S+      LNLA   +  +   QK
Sbjct: 175 DLVVSGTEEA-LTMVEAGARE--LSEAEMLEALNLAGKTLKGICLFQK 219


>gi|27375890|ref|NP_767419.1| polynucleotide phosphorylase/polyadenylase [Bradyrhizobium
           japonicum USDA 110]
 gi|81740094|sp|Q89WB3|PNP_BRAJA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|27349028|dbj|BAC46044.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium japonicum
           USDA 110]
          Length = 720

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 90/243 (37%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I     V   A GS L   G+T  +   TL           +  T   
Sbjct: 316 RIDGRDSKTVRNIIAEVGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDALSGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      ++  RA+  V+         I +  +
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHG----KLAWRAIHPVLPPHHEFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    ++  +    +  +L+    A+         + D+
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEDKRFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+SG I  +Q   +    +++     L  AKD    ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTESG-ITSLQMDIKIEGITEEIMKVALGQAKDGRIHILGEMAKA 541

Query: 238 ISN 240
           ++N
Sbjct: 542 LTN 544



 Score = 85.5 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 76/235 (32%), Gaps = 36/235 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ +  +G+T +L T        E V        +   T   G +
Sbjct: 14  RPLKLETGKIARQADGAVVATYGETVVLATVVAAKAPREGVDFLPLTVDYQEKTYAAGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +   + R+I R +R +         Q+I        +    
Sbjct: 74  P---GGYFKRE---GRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIATVLSHDMENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  +  AL                    KG + A   G +    +++    E     
Sbjct: 128 IVALVASSAALTLSGA-------------PFKGPIGAARVGFVNDEYVLNPTLDEMVDTQ 174

Query: 187 VDANFVMTDSGHIV------EVQGSAERAT--FSQDHF----FAMLNLAKDRIAD 229
           +D     T    ++      E+          F   HF     A++ LA+    +
Sbjct: 175 LDLVVAGTADAVLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKE 229


>gi|325266482|ref|ZP_08133159.1| polyribonucleotide nucleotidyltransferase [Kingella denitrificans
           ATCC 33394]
 gi|324981925|gb|EGC17560.1| polyribonucleotide nucleotidyltransferase [Kingella denitrificans
           ATCC 33394]
          Length = 705

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 95/244 (38%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      +  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPKPEDFNYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+ +  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   +  
Sbjct: 483 LGDEDHLGDMDFKVAGTTDG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILGQMQAA 541

Query: 238 ISNE 241
           +S  
Sbjct: 542 VSGP 545



 Score = 75.5 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 81/234 (34%), Gaps = 28/234 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTANKDVKEGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+        +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSCDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    +     +D
Sbjct: 130 AMIGASAALV-------------LSGVPFAGPIGAARVGYVNDTYVLNPTKQQLHRSKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                T    ++     +E     +D     +    +++  +I+   + +++EV
Sbjct: 177 LVVAGTAQAVLMV---ESEADILPEDVMLGAVVYGHEQMQAVIQAINE-LADEV 226


>gi|154244245|ref|YP_001415203.1| polynucleotide phosphorylase/polyadenylase [Xanthobacter
           autotrophicus Py2]
 gi|226704833|sp|A7IC03|PNP_XANP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|154158330|gb|ABS65546.1| Polyribonucleotide nucleotidyltransferase [Xanthobacter
           autotrophicus Py2]
          Length = 730

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 89/242 (36%), Gaps = 18/242 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR    +R I     +   A GS L   G+T  L  ATL         ++  G   
Sbjct: 317 IRIDGRDVYTVRPIVSEVGILPRAHGSALFTRGETQALVVATLGTGEDEQFIDSLEGTYK 376

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R     ++  RA+  ++         + +  
Sbjct: 377 EHFLLHYNFPPFSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPAKHEFPYTLRVVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A + G  +AL D    +        +  +L+G   A+         + D
Sbjct: 433 EILESNGSSSMATVCGTSLALMDAGVPLRRPVAGIAMGLILEGEKFAV---------LSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T+ G +  +Q   + A  +++     L  AKD    ++     
Sbjct: 484 ILGDEDHLGDMDFKVAGTEQG-VTSLQMDIKIAGITEEIMKVALTQAKDGRVHILGEMAK 542

Query: 237 VI 238
            +
Sbjct: 543 AL 544



 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 78/238 (32%), Gaps = 42/238 (17%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R ++L      + A+GS L  +GDT +L T       +     +     +   T   G +
Sbjct: 14  RTLTLETGKMARQADGSVLATYGDTKVLATVVSAREPKPGQDFFPLTVNYQEKTYAAGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV--IQADGG 124
           P   G   KRE   GR   +   + R+I R +R +         Q++I      ++ D  
Sbjct: 74  P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFPEGYKCDTQVVITVLAHDLEND-- 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
                         D +  +   +          G V A   G +    +++    E   
Sbjct: 126 -------------PDVVAMVAASAALTLSGVPFMGPVGAARVGFIDNEYVLNPTVDEVKE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERAT---------FSQDHF----FAMLNLAKDRIAD 229
             ++     T    ++ V+  A+            F   HF     A++ LA+    +
Sbjct: 173 SALELVVAGTGDA-VLMVESEAKELPEEIMLGAVMFGHRHFQPVIEAIIKLAEKAAKE 229


>gi|308802860|ref|XP_003078743.1| ribonuclease PH (ISS) [Ostreococcus tauri]
 gi|116057196|emb|CAL51623.1| ribonuclease PH (ISS) [Ostreococcus tauri]
          Length = 693

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 80/255 (31%), Gaps = 39/255 (15%)

Query: 2   RLSGRQENQ-MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R  GR  ++ +R +S+    +  A GS  V+ G+T +        +  +       G I 
Sbjct: 461 RSDGRASDEHLRALSVALDTNSRASGSSYVELGNTKVSCAVYGPRRPRVDDLTVNTGVID 520

Query: 61  AEYGMLPRS----TGNRVKREAVSGRQGGRS---QEIQRMIGRALRSVVDLSALGSRQII 113
            +   +P +          RE    +   RS    E+   I   LR+          Q+ 
Sbjct: 521 VDVFRVPFARKRAIHVERGRENEREKDLNRSAADVELSARIADVLRACALTETFPRAQVD 580

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +   ++ +DGG   A++  A  AL      M D +             +A     +    
Sbjct: 581 VYVTIMDSDGGEVVASVLAASAALARAGVEMADLA-------------SACELVRIGERL 627

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER--------ATFSQDHFFAMLNLAKD 225
           ++D    E              +G +   Q S+E           ++ D     L     
Sbjct: 628 VLDPTEEECER----------GNGKVFLAQMSSEEGMVQGETFGRWTADESRRALEQCAA 677

Query: 226 RIADLIKLQKDVISN 240
                  + ++ ++ 
Sbjct: 678 GCNRFDTIVREALAK 692


>gi|109103041|ref|XP_001112421.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Macaca mulatta]
          Length = 754

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 89/249 (35%), Gaps = 19/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R IS      K   GS L + G T +L T T +        ++V   I  
Sbjct: 323 RCDGRDLTSLRNISCEVDTFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQVITAING 382

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   ++ R+ G       +  +AL  V+         I 
Sbjct: 383 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHG----ALAEKALYPVIPKDF--PFTIR 436

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  V K        G +  Y 
Sbjct: 437 VTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEK---GEIEDYR 493

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T+ G I  +Q   +            +  A     ++++
Sbjct: 494 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 552

Query: 233 LQKDVISNE 241
           +    IS  
Sbjct: 553 IMNKTISKP 561



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 81/203 (39%), Gaps = 27/203 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R++ ++     ++A+GS +V+ GDT ++ TA   T             +    A  G +P
Sbjct: 19  RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 78

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
               N ++RE  +     +     R+I R++R +         Q++  C+++  DG    
Sbjct: 79  ---TNYLRREIGT---SDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEP 130

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI GA VAL                     G V A+  GM+ G  +V+    E S+ 
Sbjct: 131 DVLAINGASVALS-------------LSDIPWNGPVGAVRIGMIDGEYVVNPTRKEMSSS 177

Query: 186 DVDANFVMTDSGHIVEVQGSAER 208
            ++          IV ++ SAE 
Sbjct: 178 TLNLVVAGAPKSQIVMLEASAEN 200


>gi|89101186|ref|ZP_01174017.1| PnpA [Bacillus sp. NRRL B-14911]
 gi|89084095|gb|EAR63265.1| PnpA [Bacillus sp. NRRL B-14911]
          Length = 706

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 85/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR  + +R +S    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 VRPDGRGLDVIRPLSSEIGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGIEEE 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G            G R      +  RAL  V+         + +  
Sbjct: 375 KRFMHHYNFPNFSVGE----TGPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLIKSGDYYS 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++     L  AK     ++ 
Sbjct: 478 ILTDIQGMEDHLGDMDFKVAGTSKG-VTALQMDIKIEGLSREILEEALQQAKAGRMQILD 536

Query: 233 LQKDVISNE 241
                I+  
Sbjct: 537 SMLATIAEP 545



 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 93/233 (39%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ L+++GDT +L   TA+ E K +  +     +       G +P
Sbjct: 15  RTLTVEIGQLAKQANGAALIRYGDTAVLSTATASKEPKNLDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D  +  
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSMVMSVDQDCSSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A ++ G + G  +++    + +  D+
Sbjct: 129 AAMFGSSLALS-------------VSDIPFGGPIAGVTVGRINGEFVINPTVEQQNESDM 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 T    I  V+  A+     ++     +    + I  LI  Q+ ++S 
Sbjct: 176 HLVVAGTKDA-INMVEAGADEVP--EETMLEAIMYGHEEIKRLISFQEQIVSE 225


>gi|307109085|gb|EFN57324.1| hypothetical protein CHLNCDRAFT_21722 [Chlorella variabilis]
          Length = 223

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 69/226 (30%), Gaps = 25/226 (11%)

Query: 16  LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           L   V   A GS   +FG T ++       +    +  ++ G +  +  +   ++  R  
Sbjct: 5   LKTGVISQASGSAYAEFGHTKVMVGVYGPRQSERRVGYSEQGRVNCDVKLASFASRQRG- 63

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
                  Q    +E+   +  AL +  DL++     + +   V++A GG           
Sbjct: 64  -------QSAEERELSAALQTALEAAADLASFPKASVDVFVLVLEAGGG----------- 105

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV-MT 194
                +               +   VAA S   + G  ++D    E    +       M 
Sbjct: 106 --ELGVAATAAALALADAGVEMFDLVAACSVSRVQGSLVLDPTADEVFREEGGLVLALMP 163

Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            S  + ++        +S       + LA    A L    +  +  
Sbjct: 164 TSSEVTQMVSRGR---WSSSQLREGMELAMGGCAQLDAAARQCLKE 206


>gi|74225136|dbj|BAE38260.1| unnamed protein product [Mus musculus]
          Length = 783

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 91/249 (36%), Gaps = 19/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R IS    + K   GS L + G T +L T T +        +++   I  
Sbjct: 358 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 417

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   V+ R+ G       +  +AL  V+         I 
Sbjct: 418 VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHG----ALAEKALCPVIPKDF--PFTIR 471

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  V K +      G +  Y 
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNPEK---GEIEDYR 528

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T+ G I  +Q   +            +  A     ++++
Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGVPIKIIMEAIQQASVAKKEILQ 587

Query: 233 LQKDVISNE 241
           +    IS  
Sbjct: 588 IMNKTISKP 596



 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 27/203 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R++ ++     ++A+G  +++ GDT ++ TA   T             +    A  G +P
Sbjct: 54  RKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
               N ++RE  S     R     R+I R++R +         Q++  C+++  DG    
Sbjct: 114 ---TNYLRREIGS---SDREVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEP 165

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              A+ GA VAL                     G V A+  GM+ G  +V+    E S+ 
Sbjct: 166 DILAVNGASVALS-------------LSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSS 212

Query: 186 DVDANFVMTDSGHIVEVQGSAER 208
            ++          IV ++ SAE 
Sbjct: 213 TLNLVVAGAPKSQIVMLEASAEN 235


>gi|308068706|ref|YP_003870311.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Paenibacillus polymyxa E681]
 gi|305857985|gb|ADM69773.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) [Paenibacillus polymyxa E681]
          Length = 700

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 88/249 (35%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R I     +     GS L   G T  L   T  A  + ++   I   + 
Sbjct: 313 VRPDGRKLDEIRPIESDTSILPRTHGSGLFTRGQTQALSICTLGALGDVQILDGIDLEET 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      A   R+ G       +  RAL  V+         I +  
Sbjct: 373 KRFMHHYNFPPFSVGEARPLRAPGRREIGHG----ALGERALSKVIPSETEFPYTIRLVS 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA ++ G++       
Sbjct: 429 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGVAMGLIKDGDHVS 475

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +     +      L  AK+    ++ 
Sbjct: 476 VLTDIQGMEDHLGDMDFKVAGTAEG-VTAIQMDIKINGIDRQILQDALKQAKEGRLFILS 534

Query: 233 LQKDVISNE 241
              + I   
Sbjct: 535 KMMEAIQKP 543



 Score = 75.5 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 82/227 (36%), Gaps = 28/227 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R++ L    ++K A  +  V +G+T +L T T   +     ++     +T  Y     + 
Sbjct: 12  RKLVLETGRLAKQANAAVKVSYGETVVLCTVTASRE----PKDLDFFPLTVNYEERLYAV 67

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G      +KRE   GR   ++    R+  R +R +         Q++     +  D    
Sbjct: 68  GKIPGGFIKRE---GRPSQKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEPE 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ G   AL                     G +  ++ G + G  +++ D  + +  D
Sbjct: 125 IAAMIGTSAALS-------------ISDVPFNGPIGGVAVGRVDGQFVINPDIAQQNASD 171

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +      T    I+ V+  AE     ++     +    D I +++ +
Sbjct: 172 LYLVVAGTKDA-IMMVE--AEGNEIPEEVMLEAIMFGHDEIKNIVAV 215


>gi|313901029|ref|ZP_07834517.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. HGF2]
 gi|312953987|gb|EFR35667.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. HGF2]
          Length = 736

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 90/251 (35%), Gaps = 28/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56
           +R  GR+ +++R +     +   A GS L   G+T +L+  TL       I +     + 
Sbjct: 330 VRPDGRKVDEIRPLDSQVDILPRAHGSALFTRGETQVLSVTTLGPMNDNQIIDDLTEVET 389

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R      +  RAL  V+         I    
Sbjct: 390 KRFMHHYNFPPYSVGETGR----MGSPGRREIGHGALGERALSQVLPSVEDFPYTIRTVA 445

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V +++G +  A+I    ++L                   +K  VA I+ G++       
Sbjct: 446 EVTESNGSSSQASICAGTMSLMAAGV-------------PIKAPVAGIAMGLIMDEENGK 492

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G I  +Q   +    +++ F   L  AK   A +
Sbjct: 493 YTVLTDIQGMEDHFGDMDFKVAGTSKG-ITALQMDIKVTGITREVFEEALAQAKVARAQI 551

Query: 231 IKLQKDVISNE 241
           ++     IS  
Sbjct: 552 LENMMAAISEP 562



 Score = 71.7 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 88/231 (38%), Gaps = 29/231 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+K A G+ LV++ DT +L+TAT     +E +  +             G +
Sbjct: 24  RGLTVETGEVAKQAGGAVLVRYDDTVVLSTATASKQAKEGIDFFPLTVLFEEKLYSVGKI 83

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  ++RE   GR    +    RMI R +R +         Q++     +  D    
Sbjct: 84  P---GGFLRRE---GRPSEHATLTARMIDRPIRPLFADGFRNEVQVVNTVLSVDQDCTPE 137

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA +AL                     G +A +  G + G  I++    +    D
Sbjct: 138 MTAMFGASLALC-------------VSDIPFNGPIAGVMVGRVDGEYIINPTPEQLEKSD 184

Query: 187 VDANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           ++     T  + ++VE    +     S++     +    + I  L+  Q++
Sbjct: 185 INLTVAGTKYAVNMVE----SGAKEVSEEAMLGAIMFGHEHIKQLVAFQEE 231


>gi|120434746|ref|YP_860433.1| polynucleotide phosphorylase/polyadenylase [Gramella forsetii
           KT0803]
 gi|187610271|sp|A0LYC0|PNP_GRAFK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|117576896|emb|CAL65365.1| polyribonucleotide nucleotidyltransferase [Gramella forsetii
           KT0803]
          Length = 750

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 88/246 (35%), Gaps = 20/246 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKH 56
           +RL GR+ +++R+I           GS +   G+T  L T TL             +   
Sbjct: 317 IRLDGRKTDEVRDIWCEVDYLPSVHGSSIFTRGETQALATVTLGTSRDANQIDMPSHEGE 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P  TG        S R+ G       +  RAL+ ++         + +  
Sbjct: 377 ERFYLHYNFPPFCTGEARPIRGTSRREVGHG----NLAQRALKGMIPEE--CPYTVRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175
           +V++++G +  A +    +AL D    M+   +   +          IS G    Y ++ 
Sbjct: 431 EVLESNGSSSMATVCAGTMALMDAGVQMKKPVSGIAMG--------LISDGDSGKYAVLS 482

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T  G I   Q   +    S +     L  A+D    +++   
Sbjct: 483 DILGDEDHLGDMDFKVTGTADG-ITACQMDIKVKGLSYEILVNALKQARDGRLHILEKLT 541

Query: 236 DVISNE 241
           D I+  
Sbjct: 542 DTIAQP 547



 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 76/227 (33%), Gaps = 26/227 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           REIS+      K A GS +V+ G   LL T      ++ +P       +    A  G  P
Sbjct: 16  REISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKDLPFLPLTVDYREKFAAAGRYP 75

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KREA        +    R++ R LR +         Q++I   ++  D     
Sbjct: 76  ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKDYSAETQVMI--QLMSHD----- 122

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                    + + +  +   +         +  ++    G + G  I++         + 
Sbjct: 123 ------DEVMPEAMAGLAASAAIQLSDFPFECAISEARVGRVNGEFIINPTRA--QLAES 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D   ++  S   V +    E    S++     +  A + I   I+ Q
Sbjct: 175 DIEMMIGASADSVMMV-EGEMDEISEEDMVEAIKFAHEAIKVQIEAQ 220


>gi|330504823|ref|YP_004381692.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina
           NK-01]
 gi|328919109|gb|AEB59940.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina
           NK-01]
          Length = 701

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRGLNIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R + +++  +      I +  +
Sbjct: 376 PFMLHYNFPPYSVGE-CGRMGATGR---REIGHGRLARRGVAAMLPSADEFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    M+       +  VL+G   A+         + D+
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGDKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  A +   +++     V
Sbjct: 483 LGDEDHLGDMDFKVAGTAKG-VTALQMDIKIQGITEEIMEQALEQALEARLNILGQMNQV 541

Query: 238 ISN 240
           I+ 
Sbjct: 542 IAQ 544



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 72/230 (31%), Gaps = 29/230 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
           ++L    +++ A G+ LV   D   +L T    +        +  +  +   T   G +P
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKSADPSKGFFPLSVHYQEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KREA   R   +     R+I R +R +         Q+I              
Sbjct: 75  ---GGFFKREA---RPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVSTSKKTDPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
           AA+ G   AL                     G + A           +++ +Y +     
Sbjct: 129 AAMIGTSAALAISGI-------------PFNGPIGAARVAFHPETGYLLNPNYEQLKASS 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T    ++     +E    ++D     +  A +    +I+   +
Sbjct: 176 LDMVVAGTKDAVLMV---ESEAKELTEDQMLGAVLFAHEEFQVVIQAVAE 222


>gi|290992775|ref|XP_002679009.1| predicted protein [Naegleria gruberi]
 gi|284092624|gb|EFC46265.1| predicted protein [Naegleria gruberi]
          Length = 280

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 67/183 (36%), Gaps = 30/183 (16%)

Query: 1   MRLSGRQ-ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           +R   R+  NQ+R++ +   V   A+GS     G+T ++ +    E             I
Sbjct: 6   LRRDQRKTSNQLRDMQVELGVLGKADGSVKFSQGNTTVICSVCGPES--SMKEKGDQAII 63

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
                M          R+    +     +E + +I + L +V+  +      I I   V+
Sbjct: 64  DV---MF-------QPRDK---KASEEEKEYELIIRQTLENVILTNIYPRTVITISIQVV 110

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLD 178
           Q DG   +A++  A +AL D    M             K  + + SC  L  G  ++D  
Sbjct: 111 QYDGCLLSASLNAASLALLDAGVAM-------------KTTLVSSSCSYLNSGDCLLDPT 157

Query: 179 YGE 181
             E
Sbjct: 158 RIE 160


>gi|74184409|dbj|BAE25732.1| unnamed protein product [Mus musculus]
          Length = 783

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 91/249 (36%), Gaps = 19/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R IS    + K   GS L + G T +L T T +        +++   I  
Sbjct: 358 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 417

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   V+ R+ G       +  +AL  V+         I 
Sbjct: 418 VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHG----ALAEKALCPVIPKDF--PFTIR 471

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  V K +      G +  Y 
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNPEK---GEIEDYR 528

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T+ G I  +Q   +            +  A     ++++
Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGVPIKIIMEAIQQASVAKKEILQ 587

Query: 233 LQKDVISNE 241
           +    IS  
Sbjct: 588 IMNKTISKP 596



 Score = 79.4 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 27/203 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R++ ++     ++A+G  +++ GDT ++ TA   T             +    A  G +P
Sbjct: 54  RKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
               N ++RE  S     R     R+I R++R +         Q++  C+++  DG    
Sbjct: 114 ---TNYLRREIGS---SDREVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEP 165

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              A+ GA VAL                     G V A+  GM+ G  +V+    E S+ 
Sbjct: 166 DILAVNGASVALS-------------LSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSS 212

Query: 186 DVDANFVMTDSGHIVEVQGSAER 208
            ++          IV ++ SAE 
Sbjct: 213 TLNLVVAGAPKSQIVMLEASAEN 235


>gi|74183452|dbj|BAE36595.1| unnamed protein product [Mus musculus]
          Length = 783

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 91/249 (36%), Gaps = 19/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R IS    + K   GS L + G T +L T T +        +++   I  
Sbjct: 358 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 417

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   V+ R+ G       +  +AL  V+         I 
Sbjct: 418 VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHG----ALAEKALCPVIPKDF--PFTIR 471

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  V K +      G +  Y 
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNPEK---GEIEDYR 528

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T+ G I  +Q   +            +  A     ++++
Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGVPIKIIMEAIQQASVAKKEILQ 587

Query: 233 LQKDVISNE 241
           +    IS  
Sbjct: 588 IMNKTISKP 596



 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 27/203 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPM---WIRNTKHGWITAEYGMLP 67
           R++ ++     ++A+G  +++ GDT ++ TA  + K            +    A  G +P
Sbjct: 54  RKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKASPSQFMPLVVDYRQKAAAAGRIP 113

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
               N ++RE  S     R     R+I R++R +         Q++  C+++  DG    
Sbjct: 114 ---TNYLRREIGS---SDREVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEP 165

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              A+ GA VAL                     G V A+  GM+ G  +V+    E S+ 
Sbjct: 166 DILAVNGASVALS-------------LSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSS 212

Query: 186 DVDANFVMTDSGHIVEVQGSAER 208
            ++          IV ++ SAE 
Sbjct: 213 TLNLVVAGAPKSQIVMLEASAEN 235


>gi|104780032|ref|YP_606530.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas entomophila
           L48]
 gi|122985959|sp|Q1IF39|PNP_PSEE4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|95109019|emb|CAK13715.1| polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Pseudomonas entomophila L48]
          Length = 701

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 26/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R++++++  + +    I +  +
Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPAADVFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA +AL D    M             K  VA I+ G++  G     
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A + 
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTAKG-VTALQMDIKINGITEEIMEIALGQALEA 530



 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 77/231 (33%), Gaps = 31/231 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGD--THLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66
           ++L    +++ A G+ LV   +  T +L T    ++       +  +  +   T   G +
Sbjct: 15  VTLETGRIARQATGAVLVTVDNDVT-VLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +     R+I R +R +     +   Q++             
Sbjct: 74  P---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185
            AA+ G   AL                    +G + A           +++  Y + +  
Sbjct: 128 IAAMIGTSAALAISGI-------------PFEGPIGAARVAFHESTGYLLNPTYEQLAAS 174

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            +D     T    ++     +E    ++D     +  A D    +IK  K+
Sbjct: 175 SLDMVVAGTSDAVLMV---ESEAQELTEDQMLGAVLFAHDEFQAVIKAVKE 222


>gi|192359049|ref|YP_001980963.1| polynucleotide phosphorylase/polyadenylase [Cellvibrio japonicus
           Ueda107]
 gi|226702631|sp|B3PIA0|PNP_CELJU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|190685214|gb|ACE82892.1| polyribonucleotide nucleotidyltransferase [Cellvibrio japonicus
           Ueda107]
          Length = 710

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 98/247 (39%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I++   V   A GS L   G+T  L  ATL     + I +   G    
Sbjct: 315 RIDGRDNKTVRPITVDVGVLPKAHGSALFTRGETQALVVATLGNARDVQIIDQLEGEKKE 374

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R +++V+  +      + +  +
Sbjct: 375 AFLLHYNFPPYSVGE-CGRMGSTGR---REIGHGRLAKRGVQAVLPKAESFPYTLRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ G+ +AL D                 LK  VA I+ G++    G+ +
Sbjct: 431 ITESNGSSSMASVCGSSLALMDAGV-------------PLKAPVAGIAMGLVKEDNGFAV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T SG +  +Q   +    +++     L  A      ++  
Sbjct: 478 LTDILGDEDHLGDMDFKVAGTTSG-VTALQMDIKIEGITEEIMEIALEQALAARLHILGE 536

Query: 234 QKDVISN 240
              V+S 
Sbjct: 537 MNKVLSQ 543



 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 77/231 (33%), Gaps = 32/231 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ LV  G+  +L T             +  +  +       G +P 
Sbjct: 15  VTLETGRIARQATGAVLVSIGEVAVLCTVVGAKEASPGQDFFPLSVHYQEKAYAAGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126
             G   KRE   GR   +     R+I R +R +     L   Q+I  C V+  D      
Sbjct: 74  --GGYFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFLNEVQVI--CTVVSTDKKQDPD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185
            AA+ G   AL                     G + A   G   G   I++  Y +  T 
Sbjct: 127 IAAMIGTSAALAVSGI-------------PFNGPIGAARVGYTQGEGYILNPSYKQLETS 173

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           ++D     T    ++     +E     +D     +      +  +I+   +
Sbjct: 174 ELDMVVAGTKDAVLMV---ESEAKELPEDIMLGAVLYGHQEMQAVIQACAE 221


>gi|167035698|ref|YP_001670929.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida
           GB-1]
 gi|189037313|sp|B0KHX3|PNP_PSEPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|166862186|gb|ABZ00594.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida GB-1]
          Length = 701

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 26/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R++++++  + +    I +  +
Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPAADVFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA +AL D    M             K  VA I+ G++  G     
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A + 
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTAKG-VTALQMDIKINGITEEIMEIALGQALEA 530



 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 77/231 (33%), Gaps = 31/231 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGD--THLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66
           ++L    +++ A G+ LV   +  T +L T    ++       +  +  +   T   G +
Sbjct: 15  VTLETGRIARQATGAVLVTVDNDVT-VLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +     R+I R +R +     +   Q++             
Sbjct: 74  P---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185
            AA+ G   AL                    +G + A           +++  Y + +  
Sbjct: 128 IAAMIGTSAALAISGI-------------PFEGPIGAARVAFHESTGYLLNPTYEQLAAS 174

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            +D     T    ++     +E    ++D     +  A D    +I+  K+
Sbjct: 175 SLDMVVAGTADAVLMV---ESEAQELTEDQMLGAVLFAHDEFQAVIQAVKE 222


>gi|170719911|ref|YP_001747599.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida
           W619]
 gi|226702679|sp|B1J2B3|PNP_PSEPW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169757914|gb|ACA71230.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida W619]
          Length = 701

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 26/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R++++++  + +    I +  +
Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPAADVFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA +AL D    M             K  VA I+ G++  G     
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A + 
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTAKG-VTALQMDIKINGITEEIMEIALGQALEA 530



 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 77/231 (33%), Gaps = 31/231 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGD--THLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66
           ++L    +++ A G+ LV   +  T +L T    ++       +  +  +   T   G +
Sbjct: 15  VTLETGRIARQATGAVLVTVDNDVT-VLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +     R+I R +R +     +   Q++             
Sbjct: 74  P---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185
            AA+ G   AL                    +G + A           +++  Y + +  
Sbjct: 128 IAAMIGTSAALAISGI-------------PFEGPIGAARVAFHESTGYLLNPTYEQLAAS 174

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            +D     T    ++     +E    ++D     +  A D    +I+  K+
Sbjct: 175 SLDMVVAGTSDAVLMV---ESEAQELTEDQMLGAVLFAHDEFQAVIQAVKE 222


>gi|55957290|emb|CAI14013.1| exosome component 8 [Homo sapiens]
 gi|119628986|gb|EAX08581.1| exosome component 8, isoform CRA_c [Homo sapiens]
          Length = 275

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 87/257 (33%), Gaps = 26/257 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P        G++  
Sbjct: 23  RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPS-TDAPDKGYVVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL---GSRQIII-D 115
              + P  +         SG  G  +Q   + I   +    ++    L     + + +  
Sbjct: 82  NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
           CD+  +  DG    A       AL +             + + + K +    ++ H  A 
Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVAT 196

Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           S  +      IVD    E+         VM + G +  +         +       ++ A
Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGIG--LTGAKLQDCMSRA 254

Query: 224 KDRIADLIKLQKDVISN 240
             R  ++ KL  +VI +
Sbjct: 255 VTRHKEVKKLMDEVIKS 271


>gi|75674227|ref|YP_316648.1| polynucleotide phosphorylase/polyadenylase [Nitrobacter
           winogradskyi Nb-255]
 gi|123614401|sp|Q3SWP5|PNP_NITWN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|74419097|gb|ABA03296.1| 3'exoribonuclease [Nitrobacter winogradskyi Nb-255]
          Length = 718

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 92/241 (38%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I     V   A GS L   G+T  +   TL         ++  G    
Sbjct: 316 RIDGRDVKTVRNIVAEAGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDSLAGTYKE 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      ++  RA+R V+         I +  +
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGAKRREIGHG----KLAWRAIRPVLPPHHEFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA ++L D    ++  +    +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGERYAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   + A  +++     L  AKD    ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSKA 541

Query: 238 I 238
           +
Sbjct: 542 L 542



 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 81/236 (34%), Gaps = 38/236 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ +  +G+T +L T     +  E V        +   T   G +
Sbjct: 14  RPLKLETGKIARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLTVDYQEKTYAAGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +   + R+I R +R +         Q+I+       +    
Sbjct: 74  P---GGYFKRE---GRPTEKETLVSRLIDRPVRPLFADGWRNETQVIVTVLSHDMENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                    KG + A   G +    +++    E     
Sbjct: 128 ILAMVAASAALTLSGA-------------PFKGPIGAARVGFINDEYVLNPTLDEIVDTQ 174

Query: 187 VDANFVMTDSGHIVEVQGSAERAT---------FSQDHF----FAMLNLAKDRIAD 229
           +D     T    ++ V+  A+  +         F   HF     A++ LA+    +
Sbjct: 175 LDLVVAGTADA-VLMVESEAKELSEEIMLKAVMFGHRHFQPVIDAIIELAEKAAKE 229


>gi|310658988|ref|YP_003936709.1| polynucleotide phosphorylase/polyadenylase [Clostridium sticklandii
           DSM 519]
 gi|308825766|emb|CBH21804.1| polynucleotide phosphorylase/polyadenylase [Clostridium
           sticklandii]
          Length = 699

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R   R   ++R I     V     GS L   G T +++     A  + ++   +   + 
Sbjct: 311 IRPDNRMHEEIRPIWSEAGVLPRTHGSALFTRGQTQVMSITTLGALGDVQILDGLSEEEE 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  ++         I +  
Sbjct: 371 KRYMHHYNFPAYSVGEARPSRGPGRREIGHG----ALAERALEPMLPSKEDFPYAIRVVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ ++G T  A++ G+ ++L D    ++D      +  + +G   AI         + D
Sbjct: 427 EVLSSNGSTSQASVCGSTLSLLDAGVPLKDMVAGIAMGLIKEGDDVAI---------LSD 477

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T+ G I  +Q   + A   ++     L  A+     ++   K 
Sbjct: 478 IQGMEDFLGDMDFKVAGTEKG-ITAIQMDIKIAGIDEEILTRALEQARVGRLHILNEMKK 536

Query: 237 VIS 239
            +S
Sbjct: 537 TLS 539



 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 90/234 (38%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +S+    V++ A G+C+++ GDT +L  A+      E +  +  +  +       G +
Sbjct: 12  RNLSVEIGKVAELANGACILRSGDTVVLVVASNSEKPREGIDFFPLSVDYEEKMYSAGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   RS    R+I R +R +         Q++     +  +    
Sbjct: 72  P---GGFIKRE---GRPSERSILTSRLIDRPIRPLFPKGYRNDVQVVATVLSMDQNSNPD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
           T A+                       S    G   ++S G++ G  I++ D   D    
Sbjct: 126 TMAMI-------------GSSIALSISSIPFNGPTGSVSVGLIDGEFIINPDL--DQRAK 170

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                V++ +   + +  +   +  S+D     +  A + I  ++   ++++++
Sbjct: 171 SQMYLVVSGTKEAIMMVEAG-SSEISEDTMLKAILFAHEEIKKIVGFIEEIVND 223


>gi|256425469|ref|YP_003126122.1| polyribonucleotide nucleotidyltransferase [Chitinophaga pinensis
           DSM 2588]
 gi|256040377|gb|ACU63921.1| Polyribonucleotide nucleotidyltransferase [Chitinophaga pinensis
           DSM 2588]
          Length = 793

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 90/238 (37%), Gaps = 17/238 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +RL GR  +Q+R +++   +     GS L   G+T  LTT TL       +      +K+
Sbjct: 317 VRLDGRSLDQVRPLAMETDILPSPHGSALFTRGETQSLTTVTLGTPDDELLSESAATSKY 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG          R+ G       +  R+L+ ++  S   +  + +  
Sbjct: 377 TKFILHYNFPPFSTGEVKPMRGPGRREVGHG----NLAMRSLKQMMPGSEY-AYTVRVVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           D+++++G +  A +    +AL D    +    +   +     G ++  S G      + D
Sbjct: 432 DILESNGSSSMATVCAGSLALMDAGVPLPKHVSGVAM-----GLISRASDGKWA--VLTD 484

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           +   ED   D+D     T  G I  +Q   +    S D     L  A+     +I   
Sbjct: 485 ILGDEDHLGDMDFKVTGTRDG-ICGIQMDIKVDGLSMDVMRKALEQARSGRLHIIDAM 541



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 87/230 (37%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R +++      + A+G+  V+ G+  LL T     T +     +     +    A  G +
Sbjct: 16  RIVTIETGKLARQADGAVTVRLGNCILLATVVAAKTPKPGQSFFPLTVDYQEKFASAGRI 75

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+  KRE   G+       I R+I RALR +         Q+++            
Sbjct: 76  P---GSFFKRE---GKLSDYEVLISRLIDRALRPLFPDDYFCEVQVLVSL---------- 119

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              I+     + D L  +   +        ++  ++ +    + G  +++ +       D
Sbjct: 120 ---ISSDPEVMPDALACLAASAALAVSDVPIQEIISEVRVSRIDGQLVINPNRTPLEKAD 176

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T+  +I+ V+G  E    S++     + +A + I   +K Q++
Sbjct: 177 MDFIIGATEK-NIMMVEG--ESKECSEEDIIKAIEVAHEAIRVQVKAQEE 223


>gi|257870995|ref|ZP_05650648.1| polyribonucleotide nucleotidyltransferase [Enterococcus gallinarum
           EG2]
 gi|257805159|gb|EEV33981.1| polyribonucleotide nucleotidyltransferase [Enterococcus gallinarum
           EG2]
          Length = 705

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 89/239 (37%), Gaps = 26/239 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L+  T     E ++   +   + 
Sbjct: 318 IRPDGRKLDEIRPLASEVGLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEES 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL  V+         I +  
Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQVIPSEEDFPYTIRLVA 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
            + D+   ED   D+D     T  G I  +Q   +    ++      L+ AK    +++
Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALSQAKKARMEIL 538



 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 90/233 (38%), Gaps = 28/233 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + +    ++K A G+ LV++GDT +L+ A          ++T    +T  Y     + 
Sbjct: 14  RPLQVEVGQLAKQANGAVLVRYGDTVVLSAAV----ASKEAKDTDFFPLTINYEEKMYAV 69

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G      +KRE   GR    +    R+I R +R +         Q+      ++ D    
Sbjct: 70  GKVPGGFIKRE---GRPSTEATLTARLIDRPIRPMFADGFRNEVQVTNIVMSVEQDCSPA 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ G+ +AL                     G +A +  G + G  +++    +    D
Sbjct: 127 MAAMLGSSLALS-------------ISDVPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTD 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ++     T    I  V+  A+    S+D     L    + I +L+  Q+++++
Sbjct: 174 IELTVAGTKKA-INMVESGAKE--VSEDDMLGALLFGFEAIKELVAFQEEIVA 223


>gi|25188204|ref|NP_082145.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial
           precursor [Mus musculus]
 gi|71159797|sp|Q8K1R3|PNPT1_MOUSE RecName: Full=Polyribonucleotide nucleotidyltransferase 1,
           mitochondrial; AltName: Full=3'-5' RNA exonuclease
           OLD35; AltName: Full=PNPase old-35; AltName:
           Full=Polynucleotide phosphorylase 1; Short=PNPase 1;
           AltName: Full=Polynucleotide phosphorylase-like protein;
           Flags: Precursor
 gi|22799101|emb|CAD45436.1| polynucleotide phosphorylase-like protein [Mus musculus]
 gi|33585810|gb|AAH55826.1| Polyribonucleotide nucleotidyltransferase 1 [Mus musculus]
 gi|56208052|emb|CAI25081.1| polyribonucleotide nucleotidyltransferase 1 [Mus musculus]
 gi|74143624|dbj|BAE28862.1| unnamed protein product [Mus musculus]
 gi|148691866|gb|EDL23813.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_a [Mus
           musculus]
          Length = 783

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 91/249 (36%), Gaps = 19/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R IS    + K   GS L + G T +L T T +        +++   I  
Sbjct: 358 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 417

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   V+ R+ G       +  +AL  V+         I 
Sbjct: 418 VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHG----ALAEKALCPVIPKDF--PFTIR 471

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  V K +      G +  Y 
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNPEK---GEIEDYR 528

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T+ G I  +Q   +            +  A     ++++
Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGVPIKIIMEAIQQASVAKKEILQ 587

Query: 233 LQKDVISNE 241
           +    IS  
Sbjct: 588 IMNKTISKP 596



 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 27/203 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPM---WIRNTKHGWITAEYGMLP 67
           R++ ++     ++A+G  +++ GDT ++ TA  + K            +    A  G +P
Sbjct: 54  RKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKASPSQFMPLVVDYRQKAAAAGRIP 113

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
               N ++RE  S     R     R+I R++R +         Q++  C+++  DG    
Sbjct: 114 ---TNYLRREIGS---SDREVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEP 165

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              A+ GA VAL                     G V A+  GM+ G  +V+    E S+ 
Sbjct: 166 DILAVNGASVALS-------------LSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSS 212

Query: 186 DVDANFVMTDSGHIVEVQGSAER 208
            ++          IV ++ SAE 
Sbjct: 213 TLNLVVAGAPKSQIVMLEASAEN 235


>gi|307202592|gb|EFN81927.1| Polyribonucleotide nucleotidyltransferase 1, mitochondrial
           [Harpegnathos saltator]
          Length = 618

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 88/246 (35%), Gaps = 17/246 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIR 52
           +R  GR  + +R+IS    +     GS + + G T ++ T TL+        + V M I 
Sbjct: 203 VRCDGRSLSDIRDISCQVDLFNPLHGSAVFQRGQTQVMCTVTLDSLESAFKMDAVSMLIS 262

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
             K       Y   P +T          GR G R      +  + LR ++         I
Sbjct: 263 GMKEKNFFLHYEFPPYATNE----IGPVGRVGRREMGHGALAEKGLRPIIPKD--YPFTI 316

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            +  +V++++G +  A I G  +AL D    +   +    +  + K   A     +    
Sbjct: 317 RLTSEVLESNGSSSMATICGGSLALLDAGIPISSSAAGVAIGLLTKYDEAKTD--IEDYK 374

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G    +Q   +            +  A     ++IK
Sbjct: 375 ILTDILGIEDYFGDMDFKIAGTKRG-FTALQADIKIPGVPLKIIMECVQHASTAKTEIIK 433

Query: 233 LQKDVI 238
           +   VI
Sbjct: 434 IMNKVI 439


>gi|255011565|ref|ZP_05283691.1| polynucleotide phosphorylase/polyadenylase [Bacteroides fragilis
           3_1_12]
          Length = 648

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 92/250 (36%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR+  ++R I           GS +   G+T  LT+ TL  K+   I +        
Sbjct: 319 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLAHGKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+ ++         + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHG----NLAHRALKKMIPED--YPYVVRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNAGEEKY 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     LN AK+    ++
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHIL 538

Query: 232 KLQKDVISNE 241
              ++ I+  
Sbjct: 539 GKIQETIAEP 548



 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHGWITAEYGML 66
           R I+L      K A+GS +++ G+T LL T    ++ VP         ++    A +G  
Sbjct: 15  RTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYKEKFAAFGRF 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR         R++ RALR +   +      + ++  +  ADG   
Sbjct: 75  P---GGFTKRE---GRASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIILFSADG--- 123

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                   V + D L  +   +          G ++ +    + G  +++  + +    D
Sbjct: 124 --------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGKFVINPTFDQLEKAD 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T   +I+ V+G  E +  S+      + +A + I    K Q +
Sbjct: 176 MDIMVAATYE-NIMMVEG--EMSEVSEAELLEAMKVAHEAIKVHCKAQME 222


>gi|153864819|ref|ZP_01997588.1| Polyribonucleotide nucleotidyltransferase [Beggiatoa sp. SS]
 gi|152145686|gb|EDN72412.1| Polyribonucleotide nucleotidyltransferase [Beggiatoa sp. SS]
          Length = 416

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 93/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I++   V     GS L   G+T  L   TL  +    I +   G    
Sbjct: 37  RIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVVTTLGTERDAQIIDALEGEYKE 96

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G   +      R+ G      R+  R +++V+  S +    + +  +
Sbjct: 97  GFLLHYNFPPYCVGEVGRIGTPKRRELGHG----RLARRGVQAVMPTSEVFPYSVRLVSE 152

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A + GA +AL D              +  +K  VA I+ G++        
Sbjct: 153 ITESNGSSSMATVCGASLALMDA-------------AVPIKAPVAGIAMGLIKEDEQFVV 199

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    +++     L  AKD    ++ +
Sbjct: 200 LTDIMGDEDHLGDMDFKVAGTLEG-VTALQMDIKIDGITREIMETALAQAKDGRLHILSV 258

Query: 234 QKDVISNE 241
               ++  
Sbjct: 259 MDKALAKP 266


>gi|71908066|ref|YP_285653.1| polynucleotide phosphorylase/polyadenylase [Dechloromonas aromatica
           RCB]
 gi|123760455|sp|Q47D98|PNP_DECAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|71847687|gb|AAZ47183.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Dechloromonas
           aromatica RCB]
          Length = 715

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 98/243 (40%), Gaps = 26/243 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPITMRSGVLPRTHGSALFTRGETQALAVATLGTNRDEQIIDALAGEYRD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +      R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNMPPYATGECGRVGTPKRREIGHG----RLAKRALLAVLPKPEDFSYSMRLVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 LK HVA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGGCLALLDAGV-------------PLKAHVAGIAMGLIKDGNRFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G I  +Q   +    +++     L  AK+    ++ L
Sbjct: 479 LTDILGDEDHLGDMDFKVAGSTTG-ITALQMDIKIQGITKEIMQVALAQAKEARIHILNL 537

Query: 234 QKD 236
            ++
Sbjct: 538 MQE 540



 Score = 55.1 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 74/242 (30%), Gaps = 47/242 (19%)

Query: 13  EISLTRR-VSKYAEGSCLVKFG------------DTHLLTTATLEEKVPMWIRNTKHGWI 59
           ++++    V++ A G+ LV               +               +     +   
Sbjct: 15  QVTIETGEVARQAGGAVLVSMEETVVLVTVVAAKNAK--------PGQDFFPLTVDYQEK 66

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           T   G +P   G   KRE   GR   +     R+I R +R +         Q+I     +
Sbjct: 67  TYAAGRIP---GGFFKRE---GRPSEKETLTCRLIDRPIRPLFPDGFYNEVQVIATVMSL 120

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
             +  +   A+ GA  AL                     G + A   G + G  ++    
Sbjct: 121 NPEIDSDIPALIGASAALA-------------ISGVPFNGPIGAARVGYIDGQYVLCPTL 167

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA----KDRIADLIKLQK 235
            +     +D     T++  ++     +E    S++     +       +  I  + +L +
Sbjct: 168 SQLKGSQLDLVVAGTEAAVLMV---ESEADQLSEEVMLGAVVFGHTEMQKAINAINELVE 224

Query: 236 DV 237
           + 
Sbjct: 225 EA 226


>gi|291386759|ref|XP_002709750.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1 [Oryctolagus
           cuniculus]
          Length = 784

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 91/249 (36%), Gaps = 19/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R IS    + K   GS L + G T +L T T +        +++   I  
Sbjct: 358 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDRITTAING 417

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   V+ R+ G       +  +AL  V+         I 
Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHG----ALAEKALYPVIPKDF--PFTIR 471

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  V K +      G +  Y 
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSPVAGVAIGLVTKNNSEK---GDIEDYR 528

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T+ G I  +Q   +            +  A     ++++
Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587

Query: 233 LQKDVISNE 241
           +    +S  
Sbjct: 588 IMNKTLSKP 596



 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 85/220 (38%), Gaps = 29/220 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R++ ++     ++A+GS +V+ GDT ++ TA   T             +    A  G +P
Sbjct: 54  RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
               N ++RE  S     +     R+I R++R +         Q++  C+++  DG    
Sbjct: 114 ---TNYLRREIGS---SDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEP 165

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI GA VAL                     G V A+  GM+ G  +V+    E S+ 
Sbjct: 166 DVLAINGASVALS-------------LSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSS 212

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
            ++          IV ++ SAE     Q  F   + +   
Sbjct: 213 TLNLVVAGAPKSQIVMLEASAENIL--QQDFCHAIKVGMK 250


>gi|282600904|ref|ZP_05980076.2| polyribonucleotide nucleotidyltransferase [Subdoligranulum
           variabile DSM 15176]
 gi|282570791|gb|EFB76326.1| polyribonucleotide nucleotidyltransferase [Subdoligranulum
           variabile DSM 15176]
          Length = 759

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 92/248 (37%), Gaps = 35/248 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR  N++R ++    +     GS +   G T +LT  TL       +     +T++ 
Sbjct: 363 RVDGRGINEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTVCTLGSTKDAQLMDDLSDTQYK 422

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G            G R      +  RAL  V+   +     I    +
Sbjct: 423 RYIHHYNFPPYSVGEAR----APRSPGRREIGHGNLAERALVPVLPDQSEFPYTIRCVSE 478

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYP--- 173
           V+ ++G T  A+I G+ +AL D                 +K  VA ISCG++  G P   
Sbjct: 479 VLSSNGSTSQASICGSTLALMDAGV-------------PIKAPVAGISCGLITDGDPLHG 525

Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-- 226
                ++D+   ED   D+D     T  G I  +Q   +    + +     L   +    
Sbjct: 526 GRWMTMLDIQGVEDFHGDMDFKVGGTRRG-ITAIQMDIKVDGLTYEIVEEALEKCRKGRL 584

Query: 227 --IADLIK 232
             + ++IK
Sbjct: 585 YILDEIIK 592



 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 76/226 (33%), Gaps = 27/226 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R   +        A GS +V++GDT +L   T      E V  +  + +        G +
Sbjct: 66  RPFVVETGKMCGLANGSAMVRYGDTCVLCNVTMSEKPREGVDFFPLSVEFEEKLYAAGRI 125

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+ ++RE   GR G  +    R++ R +R +          + +    +  D    
Sbjct: 126 P---GSFMRRE---GRPGEHAILSSRVVDRPIRPLFPKDMRNDVCVTMTVMSLDPDNSAE 179

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              + GA +A+                     G +A +  G++ G  +++    +    D
Sbjct: 180 ITGMNGASLAIAM-------------SDIPWNGPIAGVFVGLVDGEIVLNPTKEQREHSD 226

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      ++   IV ++  A      +      +      I  ++ 
Sbjct: 227 LSLTLAASEE-KIVMIEAGANE--VDEATMMEAIKAGHAEIKKMLA 269


>gi|332532415|ref|ZP_08408293.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038058|gb|EGI74505.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 708

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 92/246 (37%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+ + +R + +   V     GS +   G+T  L TATL  +        +  T   
Sbjct: 317 RIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDSQLIDDLTGTHKN 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G       +  R + +V+         I +  +
Sbjct: 377 HFMLNYNFPPFCVGETGFVGSPKRREIGHG----NLAKRGISAVMPTLTEFPYSIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL +                 +K  VA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGTSLALMNAGV-------------PIKASVAGIAMGLVKEDDKFVV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +Q+     L  AK     ++++
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTAAG-ITALQMDIKIEGITQEIMQIALKQAKAARLHILEV 538

Query: 234 QKDVIS 239
             + IS
Sbjct: 539 MDEAIS 544



 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----MLPR 68
           ++L    +++ A+G+ L   GDT +L T   + +            +T  Y        R
Sbjct: 15  VTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQP---GQDFFPLTVNYQERMYAAGR 71

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR       I R+I R +R +     +   Q+I     +  +      
Sbjct: 72  IPGGFLKRE---GRPNDGETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVNPEIQPDMV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G   AL                     G + A   G + G  +++    E     +D
Sbjct: 129 AMIGTSAALAISGI-------------PFSGPIGASRVGYINGEYVLNPTLKELEESQLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD   ++     +E    ++D     +    ++   +I   ++
Sbjct: 176 LVVAGTDKAVLMV---ESEANVLAEDVMLGAVVYGHEQSQAIITAIEE 220


>gi|330950302|gb|EGH50562.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           Cit 7]
          Length = 701

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 92/233 (39%), Gaps = 26/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + NT  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLNTLEGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R++++++  + +    I +  +
Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA +AL D    M             K  VA I+ G++  G     
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAI 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A + 
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 530



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
           ++L    +++ A G+ LV   D   +L T    ++       +  +  +   T   G +P
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR   +     R+I R +R +     +   Q++              
Sbjct: 75  ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
           AA+ G   AL                     G V A           +++  Y +     
Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T    ++     +E    ++D     +  A D    +I   K+
Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 222


>gi|84515054|ref|ZP_01002417.1| polyribonucleotide nucleotidyltransferase [Loktanella vestfoldensis
           SKA53]
 gi|84511213|gb|EAQ07667.1| polyribonucleotide nucleotidyltransferase [Loktanella vestfoldensis
           SKA53]
          Length = 713

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 89/242 (36%), Gaps = 19/242 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR  +Q+R I     +     GS L   G+T  L   TL       + +   G    
Sbjct: 320 RIDGRALDQIRPIVSETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDALTGMYKS 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      ++  RAL++V+         I I  +
Sbjct: 380 NFMLHYNFPPYSVGEVGRVSGPGRREIGHG----KLAWRALQAVLPAPTDFPYTIRIVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176
           + +++G +  A++ G  +++ D    ++       +  V++             Y ++ D
Sbjct: 436 ITESNGSSSMASVCGGSLSMMDAGVPLKAAVAGVAMGLVMEDD---------GSYAVLSD 486

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T++G I  +Q   + A  + +     L  AK     ++     
Sbjct: 487 ILGDEDHLGDMDFKVAGTENG-ITSLQMDIKIAGITPEIMKKALEQAKAGRLHILGEMSK 545

Query: 237 VI 238
            +
Sbjct: 546 AL 547



 Score = 71.7 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 81/231 (35%), Gaps = 33/231 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+GS +   G+T ++   T     +     +     +       G +P 
Sbjct: 18  LTLETGKVARQADGSVIATLGETSVMANVTFAKSQKPGQDFFPLTVHYQEKYYAAGKVP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KREA   R   +     R+I R +R +         ++++ C V+  DG     
Sbjct: 77  --GGFFKREA---RPTEKETLTSRLIDRPIRPLFVPGF--KNEVLVMCTVLSFDG----- 124

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV- 187
                 V   D +  +   +          G + A   G + G  I++ +  +   +   
Sbjct: 125 ------VNDPDMIAMIAASAALTISGAPFMGPIGACRVGFVDGEYILNPEIDDMHNLRTK 178

Query: 188 -----DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
                D     T    ++ V+  +E    +++     +  A  +I  +I L
Sbjct: 179 PEQRLDLVVAGTKDA-VMMVE--SEAYELTEEEMLGAVTFAHAQIQPVIDL 226


>gi|300871237|ref|YP_003786110.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli
           95/1000]
 gi|300688938|gb|ADK31609.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli
           95/1000]
          Length = 712

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 83/246 (33%), Gaps = 20/246 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           MR  GR  +++R IS    +     GS L   G T  L+  TL  +    + +  +G   
Sbjct: 312 MRPDGRALDEIRPISTMTNLIPRVHGSALFTRGQTQCLSIVTLGSEKDAQLMDDIYGKEN 371

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R      +  R+  +V+         I +  
Sbjct: 372 KTFMLHYNFPPFSVGEVGR----YGSPGRREIGHGNLAERSFNAVLPPKDKFPYTIRVVA 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175
           ++++++G +  A I  + ++L      +        +                 GY ++ 
Sbjct: 428 EILESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGL----------ATYKDGYKVLT 477

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T  G I   Q   +    S       L  AK     ++   +
Sbjct: 478 DIQGVEDHLGDMDFKVAGTRKG-ITAFQLDIKLTGISTQILKEALEQAKKARYFILDKIE 536

Query: 236 DVISNE 241
             ISN 
Sbjct: 537 ATISNP 542



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 83/227 (36%), Gaps = 27/227 (11%)

Query: 16  LTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG--- 71
           L   +  K A GS  ++ G+T +L T  +  K P     +    +T  Y     + G   
Sbjct: 15  LETGLLAKQAHGSVTLRLGNTTILATV-VAAKEPN--LESDFFPLTVNYNEKYYAGGKIP 71

Query: 72  -NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
               KREA   +   +   I R+I R LR +         QII     +  D  T     
Sbjct: 72  GGFFKREA---KPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDMPT----- 123

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
                   D L  +   +          G VAA+  G   G  I++    E ++ ++D  
Sbjct: 124 --------DALALIASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELASSELDI- 174

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            V      I+ ++G A     S++ F   + LA   +   I +Q ++
Sbjct: 175 IVAGSKDAILMIEGEARE--VSEEVFIGAIELAHKEMQKYIDMQNEM 219


>gi|312963078|ref|ZP_07777563.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens
           WH6]
 gi|311282589|gb|EFQ61185.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens
           WH6]
          Length = 701

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 26/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R++++++  + +    I +  +
Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPAADVFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA +AL D    M             K  VA I+ G++  G     
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAI 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A + 
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTAKG-VTALQMDIKIKGITEEIMEIALGQALEA 530



 Score = 55.1 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 49/167 (29%), Gaps = 20/167 (11%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR   +     R+I R +R +     +   Q++              AA+
Sbjct: 75  GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDIAAM 131

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDVDA 189
            G   AL                     G + A           +++  Y +     +D 
Sbjct: 132 IGTSAALAISGI-------------PFDGPIGAARVAFHESTGYLLNPTYEQLKASSLDM 178

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
               T    ++     +E    ++D     +  A D    +I   K+
Sbjct: 179 VVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQSVINAVKE 222


>gi|257453578|ref|ZP_05618868.1| polyribonucleotide nucleotidyltransferase [Enhydrobacter aerosaccus
           SK60]
 gi|257449036|gb|EEV23989.1| polyribonucleotide nucleotidyltransferase [Enhydrobacter aerosaccus
           SK60]
          Length = 713

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 95/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPM--WIRNTKHG 57
           R+ GR    +R + +   V  Y  GS L   G+T  L T TL     V M   +  TK  
Sbjct: 318 RIDGRDLQTVRALDIQVGVLPYTHGSALFTRGETQALVTTTLGNSRDVNMIDTLAGTKQD 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +      R+ G      R+  R +++++  S      I I  D
Sbjct: 378 HFMLHYNFPSYSVGETGRDSGPKRREIGHG----RLARRGVQAMLPDSDRFPYVIRIVSD 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA +AL D                 LK  VA I+ G++  G     
Sbjct: 434 ITESNGSSSMASVCGASLALMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 480

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G +  +Q   +    + +     L+ A      ++  
Sbjct: 481 LSDILGDEDHLGDMDFKVAGSANG-VTALQMDIKIEGITPEIMEKALHQAHAGRIHILNA 539

Query: 234 QKDVISN 240
             +VIS 
Sbjct: 540 MNEVIST 546



 Score = 56.3 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 55/174 (31%), Gaps = 31/174 (17%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTA 128
           G   KRE   GR         R+I R +R +   S      I +   VI +D       A
Sbjct: 74  GGYGKRE---GRPSEMETLTSRLIDRPIRPLFPESYFNE--IQVTATVISSDKKQDADIA 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G   AL                S    G + A   G +    +++ ++       +D
Sbjct: 129 AMIGTSAALA-------------ISSAPFNGPIGAARVGFINDEYVLNPNHEALKQSSLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                T S  ++     +E    S+D     +             Q+ V+ + +
Sbjct: 176 LVVAGTSSAVLMV---ESEAKELSEDQMLGAVLYGH--------AQQQVVIDAI 218


>gi|330807487|ref|YP_004351949.1| polyribonucleotide nucleotidyltransferase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327375595|gb|AEA66945.1| Putative polyribonucleotide nucleotidyltransferase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 701

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 26/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R++++++  + +    I +  +
Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPAADVFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA +AL D    M             K  VA I+ G++  G     
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A + 
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTAKG-VTALQMDIKIKGITEEIMEIALGQALEA 530



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
           ++L    +++ A G+ LV   D   +L T    ++       +  +  +   T   G +P
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR   +     R+I R +R +     +   Q++              
Sbjct: 75  ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
           AA+ G   AL                     G + A           +++  Y +     
Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPIGAARVAFHESTGYLLNPTYEQLKASS 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T    ++     +E    ++D     +  A D    +I   K+
Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAVKE 222


>gi|301166788|emb|CBW26365.1| putative polyribonucleotide nucleotidyltransferase [Bacteriovorax
           marinus SJ]
          Length = 709

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 98/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R++GR   ++REI     + ++  GS L   G+T ++   T+     EK+   IR T+  
Sbjct: 323 RIAGRGMTEVREIETEANLLEHVHGSSLFTRGETQVMAAVTIGGKHGEKMEDSIRGTEFQ 382

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G       V  R+ G       +  RA+++V+      +    + C+
Sbjct: 383 KFYLHYNFPPFSVGEARGVRGVGRRELGHG----NLAERAVKAVMPSEEEFAYTTRVVCE 438

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           V++++G +   ++  A +AL D                 +   VA I+ G++        
Sbjct: 439 VMESNGSSSMGSVCSASMALMDAGV-------------PISNPVAGIAMGLITDGERFKV 485

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     +  A++    ++  
Sbjct: 486 LTDILGDEDHLGDMDFKVAGTVDG-ITAIQMDIKITGLTREIVEKSIEQAREGRLHILGE 544

Query: 234 QKDVISNE 241
               IS +
Sbjct: 545 MAKTISTK 552



 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 76/231 (32%), Gaps = 29/231 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS-- 69
           E+++    ++K A+GS LV    T +L T     +V           +  EY     S  
Sbjct: 16  EVTVETGRLAKQADGSVLVSCNGTQVLVTVCSAHEV---KDGQDFFPLLVEYTEKFYSAG 72

Query: 70  --TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR         R+I R LR +     +    +  +      +G    
Sbjct: 73  KFVGGFLKRE---GRPSTSETLNARLIDRPLRPLFPEGYMFDTVVSCNVLSYSDEGDAEV 129

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A  GA  AL                     G +     G + G  +++  +      + 
Sbjct: 130 LAGLGASAAL-------------TISDIPFNGPIGTCKVGRVDGKLVLNPSHS--QWAES 174

Query: 188 DANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           D    V   +  I+ V+G  E     +      +    D I + +KL + +
Sbjct: 175 DLEIAVAASADAILMVEG--EAKVVPEKEVLEAIYFGHDNIKEYVKLMEQM 223


>gi|326794274|ref|YP_004312094.1| polyribonucleotide nucleotidyltransferase [Marinomonas mediterranea
           MMB-1]
 gi|326545038|gb|ADZ90258.1| Polyribonucleotide nucleotidyltransferase [Marinomonas mediterranea
           MMB-1]
          Length = 702

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 97/246 (39%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I++   + K   GS L   G+T  + T TL    + ++   +      
Sbjct: 315 RIDGRDNQTVRPINVEVGLLKKTHGSSLFTRGETQAIATCTLGTSRDAQISDGLAGENKD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     R+  R +++V+         I I  +
Sbjct: 375 SFMLHYNFPPYSVGECGR----MGGVGRREIGHGRLARRGVQAVLPSEDEFPYTIRIVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +++ D                 LK  VA I+ G++    G+ +
Sbjct: 431 ITESNGSSSMASVCGASLSMMDAGV-------------PLKAPVAGIAMGLVKEDDGFAV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   +    +++     L  A D    +++ 
Sbjct: 478 LTDILGDEDHLGDMDFKVAGTEEG-ITALQMDIKIEGINEEIMDIALTQAMDARKYILRE 536

Query: 234 QKDVIS 239
              VI 
Sbjct: 537 MATVIG 542



 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 72/233 (30%), Gaps = 28/233 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ L   GD  +L T       +     +  +  +   T   G +P 
Sbjct: 15  VTLETGRIARQATGAVLCTLGDAQVLATVVGAKTAKPGQDFFPLSVHYQERTYAVGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR   +     R+I R +R +     +   Q++        D      
Sbjct: 74  --GGFLKRE---GRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVCTVMSTNTDLDADIP 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187
           A+     AL                     G + A   G       +++    E     +
Sbjct: 129 AMLATSAALAISGI-------------PFNGPIGAARVGFNDEEGYLLNPSNSELDGSLL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     T    ++     +E    ++D     +  A   +   I    + +S 
Sbjct: 176 DMVVAGTKDAVLMV---ESEAQELTEDEMLGAVLYAHKEMQTAITAINEFVSE 225


>gi|313884899|ref|ZP_07818651.1| polyribonucleotide nucleotidyltransferase [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619590|gb|EFR31027.1| polyribonucleotide nucleotidyltransferase [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 698

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 92/241 (38%), Gaps = 27/241 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  L+ ATL    E ++   +    +
Sbjct: 317 VRPDGRKIDEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVATLAPLREHQIIDGLGTEDY 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  +   R+ G       +  RAL+ V+         I +  
Sbjct: 377 KRFMHHYNFPPYSVGETGRMGSPGRREVGHG----ALGERALKHVIPSEEEFPYVIRLVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171
           +V++++G +  A+I G+ +A+ D                 +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICGSTLAMMDAGI-------------PIKAPVAGIAMGLVMDDDADY 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I  +Q   +    ++      L  AK     ++
Sbjct: 480 TILTDIQGLEDHLGDMDFKVAGTAKG-ITALQMDIKIQGITEQILREALAQAKVARMQIL 538

Query: 232 K 232
            
Sbjct: 539 D 539



 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 90/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
           R + +    V+K A G+ LV++G+T +L TA   +K      +     +       G +P
Sbjct: 13  RPLQVEIGQVAKQASGAVLVRYGETVVLATAVGSKKAGTGDFFPLTVNYEEKMYAVGKVP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         QI+     +  D     
Sbjct: 73  ---GGFLKRE---GRPSEHATLTARLIDRPIRPMFPDGVRNEVQIVATVLSVDQDNSPEM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ GA +AL                     G +A +    + G  I++    + +T ++
Sbjct: 127 AAMFGASLAL-------------GVSDVPFDGPIAGVKVARVDGQLIINPSVDQLATTEI 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D     T +  I  V+  A  A   +      L    + I +L+  Q+++IS
Sbjct: 174 DLTVAGTKTA-INMVESDA--AEVPEAEMLEALLFGHEAIKELVAFQEEIIS 222


>gi|70734341|ref|YP_257981.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens
           Pf-5]
 gi|123762225|sp|Q4KIF2|PNP_PSEF5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|68348640|gb|AAY96246.1| polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens
           Pf-5]
          Length = 703

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 26/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 318 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 377

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R++++++  + +    I +  +
Sbjct: 378 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPAADVFPYTIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA +AL D    M             K  VA I+ G++  G     
Sbjct: 434 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAV 480

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A + 
Sbjct: 481 LTDILGDEDHLGDMDFKVAGTAKG-VTALQMDIKIKGITEEIMEIALGQALEA 532



 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 76/230 (33%), Gaps = 29/230 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
           ++L    +++ A G+ LV   D   +L T    ++       +  +  +   T   G +P
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR   +     R+I R +R +     +   Q++              
Sbjct: 75  ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
           AA+ G   AL                     G + A           +++  Y + +   
Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPIGAARVAFHESTGYLLNPTYEQLAASS 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T+   ++     +E    ++D     +  A D    +IK  K+
Sbjct: 176 LDMVVAGTEEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQSVIKAVKE 222


>gi|239994336|ref|ZP_04714860.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
           ATCC 27126]
          Length = 724

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR    +R + +   +     GS L   G+T  L  ATL  +    +    +  +  
Sbjct: 335 RIDGRDPAMIRALDVATGILPRTHGSALFTRGETQALVAATLGTERDAQMIDELQGKRDS 394

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R +++V+         + +  +
Sbjct: 395 RFMLHYNFPPYCVGETGMIGSPKRREIGHG----RLAKRGIQAVMPSEEEFPYVVRVVSE 450

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ G  +AL D                 +K  VA I+ G++     + +
Sbjct: 451 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKSDDNFVV 497

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     L  AK+    ++ +
Sbjct: 498 LSDILGDEDHLGDMDFKVAGTTEG-ITALQMDIKIEGITKEIMQIALKQAKEARLHILNV 556

Query: 234 QKDVISNE 241
             + I   
Sbjct: 557 MDEAIGGH 564



 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 79/228 (34%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + L    DT +L T   +++      +     +T  Y     + G 
Sbjct: 36  VTLETGVIARQATAAVLASMDDTSVLVTVVGKKEA---KADQDFFPLTVNYQEKAYAAGK 92

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR       I R+I R +R +         Q+++       D  T   
Sbjct: 93  IPGGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFKNEVQVVVTVMSANPDIPTDII 149

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G   G  I++    E +  ++D
Sbjct: 150 SMIGTSAALAISGI-------------PFNGPIGAARVGFSNGEYILNTRAEEQAESELD 196

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T+ G ++ V+  +E +  S+D     +    +++  ++    +
Sbjct: 197 LVVAGTE-GAVLMVE--SEASVLSEDTMLGAVMFGHEQMQTVVNAVNE 241


>gi|226946303|ref|YP_002801376.1| polynucleotide phosphorylase/polyadenylase [Azotobacter vinelandii
           DJ]
 gi|259534109|sp|C1DFK5|PNP_AZOVD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226721230|gb|ACO80401.1| polyribonucleotide nucleotidyltransferase [Azotobacter vinelandii
           DJ]
          Length = 702

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 88/233 (37%), Gaps = 26/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R + +   V     GS L   G+T  L  ATL           +   +  
Sbjct: 317 RIDGRDNRTVRPLKIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQVLDTLEGERKD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R +++++         + +  +
Sbjct: 377 SFMLHYNFPPFSVGE-CGRMGSAGR---REIGHGRLARRGVQAMLPKDDSFPYTVRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA +AL D    M             K  VA I+ G++  G     
Sbjct: 433 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           + D+   ED   D+D     T +G +  +Q   +    +++     LN A + 
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTAAG-VTALQMDIKIQGITEEIMEIALNQALEA 531



 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 55/167 (32%), Gaps = 20/167 (11%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR   +     R+I R +R +     +   Q+I              A++
Sbjct: 75  GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVICTVLSTSKKTDPDIASM 131

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDVDA 189
            G   AL                     G + A   G       +++  Y +     +D 
Sbjct: 132 IGTSAALAVSGI-------------PFNGPIGAARVGFHEETGYLLNPSYEQLKASRLDM 178

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
               T+S  ++ V+  AE    ++D     +  A +    +I+  K+
Sbjct: 179 VVAGTESA-VLMVESEAEE--LTEDQMLGAVLFAHEEFQAVIQAIKE 222


>gi|89056519|ref|YP_511970.1| polynucleotide phosphorylase/polyadenylase [Jannaschia sp. CCS1]
 gi|123094095|sp|Q28K17|PNP_JANSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|88866068|gb|ABD56945.1| Polyribonucleotide nucleotidyltransferase [Jannaschia sp. CCS1]
          Length = 706

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 96/243 (39%), Gaps = 17/243 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +++R+I    +V     GS L   G+T  L   TL         +  HG   +
Sbjct: 318 RIDGRALDEVRDIVSETKVLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+  +      + +  +
Sbjct: 378 NFLLHYNFPPYSVGEAGR----VGPPGRREIGHGKLAWRALQAVLPAATDFPYTVRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +++ D    ++       +  VL+      S G+     + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLED---DGSYGI-----LTDI 485

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   + A  +Q+     L  AK     ++      
Sbjct: 486 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKVAGITQEIMEKALEQAKAGRLHILAEMAKA 544

Query: 238 ISN 240
           ++ 
Sbjct: 545 VTE 547



 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 79/231 (34%), Gaps = 33/231 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+GS +   G+T ++       + +  +  +     +       G +P 
Sbjct: 16  LTLETGRVARQADGSVIATLGETSVMANVTFAKSPKPGMDFFPLTVHYQEKYYAAGKVP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +           ++ C V+  D      
Sbjct: 75  --GGFFKREA---RPTEKETLTARLIDRPIRPLFVPGFKNET--LVMCTVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD----YGED 182
             A+  A  AL                    +G +A    G   G  I++ +    +   
Sbjct: 128 MVAMIAASAALTISGA-------------PFRGPIAGCRVGFEDGEYILNPEIDDMHDLR 174

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +  +   + V+  +   V +  S E    ++      +  A D I  +I L
Sbjct: 175 NNPEQRLDLVVAGTKDAVMMVES-EAYELTEAEMLGAVKFAHDSIQPVIDL 224


>gi|15616978|ref|NP_240191.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
 gi|219681731|ref|YP_002468117.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
           5A (Acyrthosiphon pisum)]
 gi|219682286|ref|YP_002468670.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|257471431|ref|ZP_05635430.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
           str. LSR1 (Acyrthosiphon pisum)]
 gi|11386962|sp|P57454|PNP_BUCAI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782710|sp|B8D9F8|PNP_BUCA5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782711|sp|B8D7R0|PNP_BUCAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|25311798|pir||E84973 polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) [imported] -
           Buchnera sp. (strain APS)
 gi|10039043|dbj|BAB13077.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
           APS (Acyrthosiphon pisum)]
 gi|219622019|gb|ACL30175.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|219624574|gb|ACL30729.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
           5A (Acyrthosiphon pisum)]
 gi|311086110|gb|ADP66192.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
           str. LL01 (Acyrthosiphon pisum)]
 gi|311086683|gb|ADP66764.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
           str. TLW03 (Acyrthosiphon pisum)]
 gi|311087269|gb|ADP67349.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
           str. JF99 (Acyrthosiphon pisum)]
          Length = 707

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   +     GS L   G+T  L + TL           +   +  
Sbjct: 315 RIDGREKDMIRALDVRTGILPRTHGSALFTRGETQSLVSVTLGTSRDAQNLDELLGDRID 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R+L +V+         I +  +
Sbjct: 375 NFLFHYNFPPYSVGEIGMVGSPKRREIGHG----RLAKRSLLAVMPTLENFPYTIRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA IS G++        
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKSAVAGISMGLVKEGNQHVL 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   +    + +   + LN A+     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGTEEG-ITALQMDMKIEGITNEIIHSALNEARLARLHILNV 536

Query: 234 QKDVISN 240
               ++ 
Sbjct: 537 MNQALNE 543



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 35/234 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPR 68
           I+L   V  + A  + +    +T +  T   ++K+      +     +   T   G +P 
Sbjct: 16  ITLETGVIARQANAAVMASMDETAVFVTVVGQKKIHTGQKFFPLTVNYQERTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR         R+I R LR +     L   QII     +         
Sbjct: 75  --GGFFRRE---GRPSENEILTARLIDRPLRPLFPKKFLNEIQIIATVVSVNPQINPDII 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           +I GA  AL                     G V A   G +    I++    +     +D
Sbjct: 130 SIIGASAALSLSGI-------------PFYGPVGAARVGYINNQYILNPISDDMKNSSLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                T +  I+ V+  AE    S++     +             Q+ V+ N +
Sbjct: 177 LVVSGTQNA-ILMVE--AESKILSEEKILGAIIFGHQ--------QQQVVINNI 219


>gi|302335751|ref|YP_003800958.1| polyribonucleotide nucleotidyltransferase [Olsenella uli DSM 7084]
 gi|301319591|gb|ADK68078.1| polyribonucleotide nucleotidyltransferase [Olsenella uli DSM 7084]
          Length = 743

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 91/247 (36%), Gaps = 30/247 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------TK 55
           R+ GR   ++R + +         GS L + G T +L+ ATL   +  W R         
Sbjct: 319 RVDGRSATEVRPLMVKPDYLPRVHGSGLFQRGQTQVLSIATLG-MLNEWQRLDTIEPVDG 377

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I   Y   P  TG   +  A   R+ G       +  RAL  V+         I + 
Sbjct: 378 KRYIH-HYNFPPFCTGETGRMGAPKRREIGHGS----LAERALLPVIPSEDEFPYAIRVV 432

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            +V++++G +  A+  G+ +AL D    +                V+ ++ G++      
Sbjct: 433 SEVMESNGSSSMASTCGSTLALMDAGVPLAR-------------PVSGVAMGLIQEEGKT 479

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I  +Q   +    + +     L  A +    ++
Sbjct: 480 VVLTDIQGLEDFLGDMDFKVCGTVKG-ITAMQMDNKATGLTPEILRQALMQAHEGRMHIL 538

Query: 232 KLQKDVI 238
           +   + I
Sbjct: 539 EAMLEQI 545



 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 59/167 (35%), Gaps = 21/167 (12%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G  +KREA   R   ++    R+I R +R           QI+    V        T ++
Sbjct: 73  GGYLKREA---RPSEKATLTARLIDRPIRPSFPEGFRNEVQIVAMPLVADQVNPVDTISV 129

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG--MLCGYPIVDLDYGEDSTIDVD 188
            GA  A+                    +G +A +  G  +  G  IV+  Y E    D+D
Sbjct: 130 MGASAAM-------------TVGGVPFEGPLACVRVGRDVETGEFIVNPSYEERDASDLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
               +  S   + +   A     S+D   A +   ++ IA   + Q+
Sbjct: 177 LE--LAGSATFISM-LEAGAKEVSEDDMLAAMAFGQEAIAAFCEEQR 220


>gi|187611319|sp|A4WWP0|PNP_RHOS5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 714

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 94/248 (37%), Gaps = 27/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I     V     GS L   G+T  L   TL       I +  HG   +
Sbjct: 318 RIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVTTLGTGEDEQIIDALHGNSRS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+  +      I +  +
Sbjct: 378 NFLLHYNFPPYSVGEVGRF----GPPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP- 173
           + +++G +  A++ G  +++ D                 LK  VA ++ G++    G   
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEDDGKWA 480

Query: 174 -IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T++G I  +Q   + A  +       L  AKD    ++ 
Sbjct: 481 VLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPAIMEQALAQAKDGRMHILG 539

Query: 233 LQKDVISN 240
                +S+
Sbjct: 540 EMSKALSS 547



 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 76/231 (32%), Gaps = 33/231 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+GS +   G+T ++   T     +     +     +       G +P 
Sbjct: 16  LTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLTVHYQERYYAAGKVP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++   V+  D      
Sbjct: 75  --GGFFKREA---RPSEKETLTSRLIDRPIRPLFVDGF--KNEVLLIVTVLSHDLVNEPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE----D 182
             A+  A  AL                     G + A   G   G  +++ D  +     
Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIGAARVGYANGEYVLNPDVDDMQKLR 174

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
              +   + V+  +   V +  S E    S+      +    + +  +I +
Sbjct: 175 ENPEQRLDLVIAGTKDAVMMVES-EAYELSEAEMLGAVKFGHEAMQPVIDM 224


>gi|109897953|ref|YP_661208.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas
           atlantica T6c]
 gi|123064734|sp|Q15VD4|PNP_PSEA6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|109700234|gb|ABG40154.1| Polyribonucleotide nucleotidyltransferase [Pseudoalteromonas
           atlantica T6c]
          Length = 703

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 92/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59
           R+ GR    +R + +   +     GS L   G+T  +  ATL  +    + +  +G +  
Sbjct: 314 RIDGRDPAMIRALDVATGILPRTHGSALFTRGETQAIVAATLGTERDAQMIDGLNGKVDS 373

Query: 60  --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R +++V+         + +  +
Sbjct: 374 RFMLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIQAVMPSEKEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKNDENFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +Q+     L  AK+    ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTTEG-ITALQMDIKIEGITQEIMQVALKQAKEARLHILGV 535

Query: 234 QKDVISNE 241
               IS  
Sbjct: 536 MDQAISGH 543



 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 73/225 (32%), Gaps = 27/225 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +    DT +L +   +         +     +   T   G +P 
Sbjct: 15  VTLETGVIARQATAAVMASMDDTSVLVSVVGKKDTKPGQDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +     +   QII+       +  T   
Sbjct: 74  --GGFFKRE---GRPSEYETLTSRLIDRPIRPLFPDGFMNEVQIIVTVVSANPEIPTDII 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G V A   G   G  +++    E     +D
Sbjct: 129 SLIGTSAALA-------------ISGMPFNGPVGAARVGYTDGQYVLNTRTSELEISQLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
                T  G ++ V+  AE    S+D     +    +++  ++  
Sbjct: 176 LVVAGTK-GAVLMVESEAE--VLSEDVMLGAVMFGHEQMQTVVNA 217


>gi|78185360|ref|YP_377795.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           CC9902]
 gi|123580765|sp|Q3AV44|PNP_SYNS9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78169654|gb|ABB26751.1| RNA binding S1 [Synechococcus sp. CC9902]
          Length = 721

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 92/234 (39%), Gaps = 28/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66
           REI LT    +  A GS LV+ GDT +L TAT                +  +Y       
Sbjct: 13  REIRLTTGRFAPQAGGSVLVECGDTAVLVTAT----RSKGRDGIDFLPLICDYEERLYAA 68

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
            R  G+ ++REA   R   R+    R+I R +R +         Q++  C  +     + 
Sbjct: 69  GRIPGSYMRREA---RPPERATLTCRLIDRPMRPLFPSWMRDDLQVVATCLSLDERVPSD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+TGA +A                      G +AA+  G+L    +++  Y E    D
Sbjct: 126 VLAVTGASIATLLAGI-------------PFNGPMAAVRVGLLGDDFVLNPSYREIERGD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +D     T  G +V V+  A +    +      ++   + I +LIK Q+ ++ +
Sbjct: 173 LDLVVAGTADG-VVMVEAGANQ--LPEGDVIEAIDFGYEAIQELIKAQETLLKD 223



 Score = 94.8 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 94/250 (37%), Gaps = 29/250 (11%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-----NTK 55
           R+ GR  +++R+IS    V  +   GS L + G T +L+TATL              NT+
Sbjct: 323 RVDGRGLDEVRQISAMAGVLPRRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLHPNTE 382

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P S G      +   R+ G       +  RA+  V+         + + 
Sbjct: 383 KLYLH-HYNFPPYSVGETRPMRSPGRREIGHG----ALAERAILPVLPEKDTFPYVVRVV 437

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V+ ++G T   ++ G+ +AL D                 LK  V+  + G++      
Sbjct: 438 SEVLSSNGSTSMGSVCGSTLALMDAGV-------------PLKAPVSGAAMGLIKEGKDI 484

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     ++ G I  +Q   +            +N A+     ++
Sbjct: 485 KILTDIQGIEDFLGDMDFKVAGSEKG-ITALQMDMKITGLPVKVMAEAVNQARPARLHIL 543

Query: 232 KLQKDVISNE 241
           +   + I   
Sbjct: 544 EKMLEAIDKP 553


>gi|294788877|ref|ZP_06754118.1| polyribonucleotide nucleotidyltransferase [Simonsiella muelleri
           ATCC 29453]
 gi|294483359|gb|EFG31045.1| polyribonucleotide nucleotidyltransferase [Simonsiella muelleri
           ATCC 29453]
          Length = 703

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 94/244 (38%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      +  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPKPEDFNYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+ +  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGVAMGLILEDNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   +  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILTQMQAA 541

Query: 238 ISNE 241
           +   
Sbjct: 542 VEGP 545



 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 82/233 (35%), Gaps = 35/233 (15%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
           +++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P
Sbjct: 15  QVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKDVKEGQDFFPLTVDYFERTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI---IIDCDV-IQADG 123
              G   KRE+   +Q  +     R+I R +R +         QI   +I CD  I +D 
Sbjct: 75  ---GGFFKRES---KQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVISCDPEIDSD- 127

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
                A+ GA  AL                     G + A   G +    +++    +  
Sbjct: 128 ---IPAMIGASAALV-------------LSGVPFAGPIGAARVGYINDTYVLNPTKHQMH 171

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              +D     T+S  ++     +E     +D     +    +++  +I    +
Sbjct: 172 RSQLDLVVAGTESAVLMV---ESEANILPEDVMLGAVVYGHEQMQTVIAAINE 221


>gi|168184618|ref|ZP_02619282.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
           Bf]
 gi|237795848|ref|YP_002863400.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum
           Ba4 str. 657]
 gi|259534115|sp|C3L0B0|PNP_CLOB6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|182672277|gb|EDT84238.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
           Bf]
 gi|229263835|gb|ACQ54868.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
           Ba4 str. 657]
          Length = 702

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 86/244 (35%), Gaps = 16/244 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           R  GR  N++R IS    +     G+ L   G T ++T AT     + ++   I   +  
Sbjct: 312 RPDGRAFNEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIAEEESK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  RAL  ++         I +  +
Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSEEEFPYTIRLVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A++ G+ +AL D    ++  +    +  +    +            I D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLE-------KEKVITDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   + A  S       L  AK     ++   K+ 
Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITSIQFDTKIAGLSNSCVKDALEGAKKARLHILGKIKEC 539

Query: 238 ISNE 241
           I   
Sbjct: 540 IPEP 543



 Score = 81.3 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 88/236 (37%), Gaps = 31/236 (13%)

Query: 12  REISL---TRRVSKYAEGSCLVKFGDTHLL--TTAT--LEEKVPMWIRNTKHGWITAEYG 64
           R++ +      +   A     + +GDT ++    A+    E +  +  + ++       G
Sbjct: 12  RKMKVDFGKTGMLSNAA--IFMSYGDTVVMINANASKEPREGIDFFPLSVEYEERLYSVG 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G  +KRE   G+   +S    R I R LR +         QI+     ++ D  
Sbjct: 70  KIP---GGFIKRE---GKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQDNL 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               AI G+ +AL                S      VAA+S G++ G  I++    +   
Sbjct: 124 PEILAINGSSLALC-------------LSSIPFTTPVAAVSVGLVDGEFIINPTVAQREN 170

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             +D     T    ++ V+   +     ++  ++ +    +   +++  Q++ ++ 
Sbjct: 171 TILDLTVCATKE-RVMMVEAGGQE--IDEETMYSAIMFGFEECKNIVAFQEEAVAK 223


>gi|313236011|emb|CBY11338.1| unnamed protein product [Oikopleura dioica]
          Length = 271

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 90/247 (36%), Gaps = 22/247 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +++R + L + V+  A+ S +++ G+T ++   T  E +       K G  +
Sbjct: 28  VRPDGRSLDELRPLVLAKNVAPTADSSAMIRLGNTKVICGITA-ETIKPAAATPKDGSFS 86

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG------SRQIII 114
             +      + N     A +G     +Q +   +   L+ V + + L       +  + I
Sbjct: 87  VNFEFSSVCSPN-----AKAGPPNEVAQTMSIFLDGILKQVFETNQLCIEPDLLAWTLFI 141

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV---------LKGHVAAIS 165
           D   ++ DG    AA+     +L D          +     V         LK    + +
Sbjct: 142 DVYCLEDDGNVTDAAMMSVISSLRDLKLPEITIDEETAKPVVNLEKQSPVDLKMFPVSTT 201

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
            G   G  ++D    E          V ++ G ++    S   +  SQ+   A +  +K 
Sbjct: 202 YGEFSGILLLDPTARETELGSSPITVVCSEKGALLCFNRSG-GSPLSQEQVAAAIENSKR 260

Query: 226 RIADLIK 232
           R + +  
Sbjct: 261 RSSTIYD 267


>gi|260889890|ref|ZP_05901153.1| polyribonucleotide nucleotidyltransferase [Leptotrichia hofstadii
           F0254]
 gi|260860496|gb|EEX74996.1| polyribonucleotide nucleotidyltransferase [Leptotrichia hofstadii
           F0254]
          Length = 699

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 92/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R  GRQ  ++R I +         GS L   G+T  L  ATL    +E++   + +    
Sbjct: 321 RADGRQTTEIRPIDVEIDTLPVPHGSALFTRGETQALVVATLGSKEDEQIIDGMEDETRK 380

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      A   R+ G       +  RAL+ V+  +      + +  +
Sbjct: 381 KFFLHYNFPPYSVGEAGFMRAPGRRELGHG----NLAERALKYVMPETDKFPYTVRLVSE 436

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  +AL                   +K  VA I+ G++        
Sbjct: 437 ITESNGSSSQASICGGSLALMAAGV-------------PIKSTVAGIAMGLIKEGETFTV 483

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     L  A +    +I  
Sbjct: 484 LTDIQGLEDHLGDMDFKVAGTRDG-ITAIQMDIKIEGITREIMEIALRQALEGRLFIIDK 542

Query: 234 QKDVISNE 241
            + VIS  
Sbjct: 543 MEAVISEP 550



 Score = 85.5 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 83/235 (35%), Gaps = 31/235 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
           +I ++   +++ A GS +V+ G T LL TAT    + E    +     +       G  P
Sbjct: 15  KIKISTGKIARQAGGSVVVQCGGTMLLVTATRSKDVREGQDFFPLTVDYIEKFYASGKFP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125
              G  +KRE    + G     I R+I R +R +     L    + I   V+  D     
Sbjct: 75  ---GGFIKRET---KPGTDEVLISRLIDRPIRPLFPEGFL--NAVHIVVTVLSYDEVNYP 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              A  G   AL                     G VA ++ G + G  I++    +    
Sbjct: 127 ENLATIGVSAAL-------------GLSDIPFAGTVAGVTVGYINGEYILNPTGEQLLES 173

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ++  +   T    +  V+  A+    S++     +    ++I ++   Q   +  
Sbjct: 174 EIQLSVAGTKDA-VTMVEAGAKE--VSEEVMLEAIMFGHEKIKEICAEQDKFLEQ 225


>gi|148556711|ref|YP_001264293.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas wittichii
           RW1]
 gi|187611293|sp|A5VCY9|PNP_SPHWW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148501901|gb|ABQ70155.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas wittichii
           RW1]
          Length = 774

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 94/241 (39%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I         A GS L   G+T  ++T TL  K    + +  +G    
Sbjct: 314 RIDGRDTRTVRPIVAEAHFLPRAHGSALFTRGETQSISTCTLGTKESEQMIDGLNGLRYE 373

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G      ++  RAL +V+         I +  D
Sbjct: 374 HFMLHYNFPPYSVGEVGRFGAPGRREVGHG----KLAWRALHAVLPTKEEFPYTIRLTSD 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +A+ D    ++   +   +  +L+G   A+         I D+
Sbjct: 430 ITESNGSSSMATVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDFAV---------ISDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   + A  +++ F   L  AK+  A ++      
Sbjct: 481 LGDEDHLGDMDFKVAGTSEG-ITTMQMDIKIAGITEEIFKTALLQAKEGRAHILGEMAKA 539

Query: 238 I 238
           +
Sbjct: 540 L 540



 Score = 82.8 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 79/226 (34%), Gaps = 29/226 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           ++L    V++ A+G+ L   G+T +L   T    V           +T  Y     S+G 
Sbjct: 16  LTLETGRVARQADGAVLATLGETVVLCAVTAARSV---KEGQDFFPLTVHYQEKYFSSG- 71

Query: 73  RVKREAVSGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTA 128
           R+        +G   +E  + R+I R +R +          I +   V+  DG       
Sbjct: 72  RIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNE--INVIAQVLSYDGENEPDIL 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+  A  AL                     G + A   G   G  +++    + +  D+D
Sbjct: 130 AMIAASAAL-------------TISGVPFMGPIGAARVGYKDGEYLLNPTDADVAAGDLD 176

Query: 189 ANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
                T D+  +VE    +E    S++     +  A     D+IK 
Sbjct: 177 LVVAATHDAVMMVE----SEAKELSEEVMLGAVMFAHKASQDVIKA 218


>gi|299133369|ref|ZP_07026564.1| polyribonucleotide nucleotidyltransferase [Afipia sp. 1NLS2]
 gi|298593506|gb|EFI53706.1| polyribonucleotide nucleotidyltransferase [Afipia sp. 1NLS2]
          Length = 714

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 18/242 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           +R+ GR    +R I     V   A GS L   G+T  L   TL           +  T  
Sbjct: 315 LRIDGRDVKTVRPIVAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDALSGTYK 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R     ++  RA+  V+         + +  
Sbjct: 375 ETFLLHYNFPPFSVGETGR----IGSPGRREIGHGKLAWRAIHPVLPAHHEFPYTLRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++ +++G +  A + G+ +AL D    ++  +    +  +L+G   A+         + D
Sbjct: 431 EITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRFAV---------LSD 481

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     TD G +  +Q   + A  +++     L  AKD    ++     
Sbjct: 482 ILGDEDHLGDMDFKVAGTDKG-VTSLQMDIKIAGITEEIMKIALTQAKDGRIHILGEMAK 540

Query: 237 VI 238
            +
Sbjct: 541 AL 542



 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 81/236 (34%), Gaps = 38/236 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + L    V++ A+G+ +  +G+T ++ T     T +E +        +   T   G +
Sbjct: 14  RPLKLETGKVARQADGAVIATYGETVVIATVVSAKTPKEGIDFLPLTVNYQEKTFAAGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +   + R+I R +R +         Q+I+       +    
Sbjct: 74  P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFIKGYRCDTQVIVTTLSHDMENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                     G + A     +    I++    E +   
Sbjct: 128 IVAMVAASAAL-------------TLSGVPFMGPIGAARVAFVNNEFILNPTLDEMADTQ 174

Query: 187 VDANFVMTDSGHIVEVQGSAERAT---------FSQDHFF----AMLNLAKDRIAD 229
           +D     T    ++ V+  A+            F   HF     A+++LA+    +
Sbjct: 175 LDLVVAGTADA-VLMVESEAKELPEEVMLGAVMFGHRHFQPVIKAIIDLAEKAAKE 229


>gi|56963987|ref|YP_175718.1| polynucleotide phosphorylase/polyadenylase [Bacillus clausii
           KSM-K16]
 gi|81366005|sp|Q5WFU8|PNP_BACSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56910230|dbj|BAD64757.1| polyribonucleotide nucleotidyltransferase [Bacillus clausii
           KSM-K16]
          Length = 710

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 92/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR  +++R +S   ++     GS L   G T  L   T  A  + +V   +   + 
Sbjct: 313 IRPDGRGVDEIRPLSSQIKLLPRTHGSGLFTRGQTQALSVCTLGALGDVQVLDGLGIEET 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RAL  V+         I +  
Sbjct: 373 KRFMHHYNFPQFSVGETGPIRAPGRREIGHG----ALGERALEQVIPSEQEFPYTIRLVS 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 429 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKQGEHMT 475

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T +G +  +Q   + +  +++     L  AK     ++ 
Sbjct: 476 VLTDIQGMEDALGDMDFKVAGTANG-VTALQMDIKISGINREVLEQALEQAKQGRMKILS 534

Query: 233 LQKDVISNE 241
              + I   
Sbjct: 535 NMMEAIDKP 543



 Score = 95.5 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 93/232 (40%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R +S+    ++K A G+ LV++GDT +L   TA+ E K +P +     +       G +P
Sbjct: 15  RTLSVEVGQLAKQANGAVLVRYGDTAVLSTATASKEPKDLPFFPLTVNYEERLYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   R+    R+I R +R +         Q+I        D     
Sbjct: 75  ---GGFIKRE---GRPSERAILTSRLIDRPIRPLFPDGFRNDVQVISIVMSSDQDASPEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  I++    + +  D+
Sbjct: 129 AAMIGSSLALC-------------VSDIPFEGPIAGVTVGRINGEFIMNPTPAQLAESDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D     T    I  V+  A+     +D     +    + I  +I  Q+ V+ 
Sbjct: 176 DLTVAGTKEA-INMVEAGAKEVP--EDVMLEAILAGHENIKKMIAFQEKVVE 224


>gi|77457010|ref|YP_346515.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens
           Pf0-1]
 gi|123606003|sp|Q3KI80|PNP_PSEPF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|77381013|gb|ABA72526.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens
           Pf0-1]
          Length = 701

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 91/233 (39%), Gaps = 26/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R++ +++  + +    I +  +
Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVSAMLPAADVFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA +AL D    M             K  VA I+ G++  G     
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A + 
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTAKG-VTALQMDIKIKGITEEIMEIALGQALEA 530



 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 74/230 (32%), Gaps = 29/230 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
           ++L    +++ A G+ LV   D   +L T    ++       +  +  +   T   G +P
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR   +     R+I R +R +     +   Q++              
Sbjct: 75  ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKTDPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
           AA+ G   AL                     G + A           +++  Y + +   
Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPIGAARVAFHESTGYLLNPTYEQQAASS 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T    ++     +E    ++D     +  A D    +I   K+
Sbjct: 176 LDMVVAGTSDAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAVKE 222


>gi|160932224|ref|ZP_02079615.1| hypothetical protein CLOLEP_01059 [Clostridium leptum DSM 753]
 gi|156868826|gb|EDO62198.1| hypothetical protein CLOLEP_01059 [Clostridium leptum DSM 753]
          Length = 733

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 83/228 (36%), Gaps = 26/228 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR  +QMR ++    +     GS +   G T ++T ATL       +       +  
Sbjct: 315 RVDGRAMDQMRPLAAEVGLLPRVHGSGMFTRGQTQVITAATLGPVSDQQLLDGIDGEEFK 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
               +Y     S G          R+ G       +  RAL  V+           +  +
Sbjct: 375 RYMHQYNFPSYSVGETRPSRGPGRREIGHG----ALAERALLPVIPPVEEFPYAYRLVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           V+ ++G T  A+I G+ +AL D                 +K  VA ISCG++  G     
Sbjct: 431 VVSSNGSTSQASICGSTLALMDAGV-------------PIKAPVAGISCGLITEGERWMT 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +VD+   ED   D+D     T  G I  +Q   +    + +     L 
Sbjct: 478 MVDIQGLEDFFGDMDFKVAGTHEG-ITAIQMDLKIDGLTPEIVKEALE 524



 Score = 85.9 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 78/229 (34%), Gaps = 27/229 (11%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +        A G+C V++GDT +    T      + +  +  +          G +
Sbjct: 15  RPLKIETGKIAQLANGACFVRYGDTVVNVAVTASAKPRDGIDFFPLSVDFEEKLYAVGKI 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+ +KRE   GR   ++    R+I R +R +          ++     +  D    
Sbjct: 75  P---GSFLKRE---GRPSDKAILTSRVIDRPIRPLFPKDMRNDVSVVCTVMSVDPDCSPE 128

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ G   AL                    KG ++ +S G + G  +++    +     
Sbjct: 129 IAAMVGTSAALS-------------ISDIPWKGPISGVSVGYVDGEYVINPTAEQREKSQ 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           +      TD   I  ++  A     S +  +  +    +    +I+  K
Sbjct: 176 MAVTVASTDKL-IAMIEAGANE--VSDEVMYNGIMAGHEANQKIIEFIK 221


>gi|327262753|ref|XP_003216188.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Anolis carolinensis]
          Length = 765

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 18/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA---TLEEKVPM-----WIRN 53
           R  GR    +R IS    + K   GS L + G T +L T    +LE  V        I  
Sbjct: 338 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSVKSDLITTAISG 397

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K  +++ R+ G       +  +AL+ V+         I 
Sbjct: 398 IKEKNFMLHYEFPPYATNEIGKISSMNRRELGHG----ALAEKALKPVIPNEF--PFTIR 451

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +   L     +   G +  Y 
Sbjct: 452 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVG--LVTSPNSEKNGDIENYR 509

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T+ G I  +Q   +            +  A     ++++
Sbjct: 510 LLTDILGIEDYNGDMDFKMAGTNKG-ITALQADIKLPGIPLKIVMEAIQQATVAKREILQ 568

Query: 233 LQKDVISNE 241
           +    I   
Sbjct: 569 IMNKTIGKP 577



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 81/203 (39%), Gaps = 27/203 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTT-ATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
           R++ ++     ++A+GS +V+ GDT ++ T  +  +  P          +  +Y     +
Sbjct: 34  RKLEISSGKLARFADGSAVVQLGDTSVMVTAVSKTKPSPSQFMP-----LVVDYRQKAAA 88

Query: 70  TGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
            G R+    +    G   +EI   R+I R++R +         QI+  C+++  DG    
Sbjct: 89  AG-RIPTNYLRRELGSTDKEILTSRVIDRSIRPLFPAGYYYDTQIL--CNLLAVDGVNDP 145

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI GA  AL                     G + A+  G++ G  +V+    E S+ 
Sbjct: 146 EVLAINGASAAL-------------TLSDIPWNGPIGAVRVGLIDGEVVVNPTRKEMSSS 192

Query: 186 DVDANFVMTDSGHIVEVQGSAER 208
            +D          +V ++ +AE 
Sbjct: 193 TLDLIVSSAPRSQVVMLEAAAEN 215


>gi|303326248|ref|ZP_07356691.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp.
           3_1_syn3]
 gi|302864164|gb|EFL87095.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp.
           3_1_syn3]
          Length = 747

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 93/244 (38%), Gaps = 19/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I +   V   A GS L + G+T  L  ATL         ++  G +T 
Sbjct: 324 RIDGRDTKSVRPIQIQTGVLPRAHGSALFRRGETKSLVIATLGSSTDEQRMDSLTGDVTK 383

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            + ML  +       E    R   R      +  ++LR ++   A     + +  + +++
Sbjct: 384 RF-MLHYNFPPYCVGEVKPVRVSRREIGHGALAEKSLRPILPADADFPFTLRVVAETMES 442

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---PIVDL 177
           +G +  AA+ G  ++L D                 +   VA ++ G++  G     + D+
Sbjct: 443 NGSSSMAAVCGGSLSLMDAGV-------------PVSAPVAGVAMGLIKEGEKFIVLTDI 489

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED+  D+D     T  G +  VQ   +    + D   A +  A++    ++      
Sbjct: 490 LGDEDALGDMDFKIAGTADG-VTGVQMDIKITGLTTDIMRAAMRQAREGRLHILAEMARA 548

Query: 238 ISNE 241
           I+  
Sbjct: 549 IAEP 552



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 77/217 (35%), Gaps = 26/217 (11%)

Query: 22  KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78
             A G+  ++ G T +L T     LE     +    ++       G +P   G+  +RE 
Sbjct: 29  NQAHGAVWMQCGGTVVLVTVCSQPLEFDKGFFPLTVEYSEKMYAAGRIP---GSFFRREI 85

Query: 79  VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138
             GR   R   + R+I R +R +         Q++        +  +   A+TGA  AL 
Sbjct: 86  --GRPSERETLVSRLIDRPIRPLFPKGLNEDVQVLASVISADQENESDVLALTGASAAL- 142

Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS-G 197
                              +G VA    G + G  +++  +  +     D N +   S  
Sbjct: 143 ------------MVSPLPFEGPVAGGRIGRVNGQFVLNPSF--EQQAQSDLNILFAASRD 188

Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            +  V+G A     S+D     L+  +  I  LI  Q
Sbjct: 189 ALTMVEGDAR--FLSEDVIIEALDWGRKEIQPLIDAQ 223


>gi|212703635|ref|ZP_03311763.1| hypothetical protein DESPIG_01680 [Desulfovibrio piger ATCC 29098]
 gi|212672930|gb|EEB33413.1| hypothetical protein DESPIG_01680 [Desulfovibrio piger ATCC 29098]
          Length = 750

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 88/249 (35%), Gaps = 27/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR    +R I +   V   A GS + + G+T  L   TL          +  G +T
Sbjct: 322 VRIDGRDTKTVRPIQIQTSVLPRAHGSAIFRRGETKSLVVTTLGSSTDEQRMGSLSGDVT 381

Query: 61  ----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G     E    R   R      +  ++LR V+   A     + +  
Sbjct: 382 KRFMLHYNFPPFSVG-----EVKPVRVSRREIGHGALAEKSLRPVMPADADFPFTVRVVS 436

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + ++++G +  AA+ G  ++L D                 +   VA ++ G++       
Sbjct: 437 ETVESNGSSSMAAVCGGCLSLMDAGI-------------PISAPVAGVAMGLIKEGDKFI 483

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G +  VQ   +    + D     +  A +    ++ 
Sbjct: 484 VLTDILGDEDALGDMDFKIAGTAEG-VTGVQMDIKITGLTTDIMRQAMQQAHEGRLHILA 542

Query: 233 LQKDVISNE 241
                +   
Sbjct: 543 EMAKALPEP 551



 Score = 82.4 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 79/227 (34%), Gaps = 27/227 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           EI      ++  A G+  V+ G T +L T     LE     +    ++       G +P 
Sbjct: 19  EIIFETGRLANQAHGAVWVQCGGTVVLVTVCSQPLEFDKGFFPLTVEYSEKMYAAGRIP- 77

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR   R   + R+I R +R +         Q++        +  +   
Sbjct: 78  --GSFFRREI--GRPSERETLVSRLIDRPIRPLFPKGLNEDVQVLASVISADQENESDVL 133

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+TGA  A+                    +G VA    G + G  +++  + E      D
Sbjct: 134 ALTGASAAV-------------MLSPLPFEGPVAGGRIGRIDGQFVLNPTFEEQERS--D 178

Query: 189 ANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            N V   S   +  V+G  E     +D     L   +  I  LI  Q
Sbjct: 179 LNIVFAASRDALTMVEG--EATFVPEDVIIDALEWGRKEIQPLIDAQ 223


>gi|83589904|ref|YP_429913.1| polynucleotide phosphorylase/polyadenylase [Moorella thermoacetica
           ATCC 39073]
 gi|123524642|sp|Q2RJL9|PNP_MOOTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|83572818|gb|ABC19370.1| Polyribonucleotide nucleotidyltransferase [Moorella thermoacetica
           ATCC 39073]
          Length = 747

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +R+ GR   ++R I+    V     GS L   G+T +LT  TL       I +     + 
Sbjct: 330 IRVDGRTLEEIRPITCEVGVLSRTHGSGLFTRGETQVLTVTTLGPISDEQILDDLGVDES 389

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      A   R+ G       +  RAL  ++         I +  
Sbjct: 390 KRYMHHYNFPPYSVGEARPIRAPGRREIGHG----ALAERALEPMIPSEEEFPYAIRLVS 445

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V+ ++G T   ++ G+ ++L D                 +K  VA ++ G++       
Sbjct: 446 EVLGSNGSTSMGSVCGSTLSLMDAGV-------------PIKAPVAGVAMGLVKENDQVA 492

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED+  D+D     T  G I  +Q   + A   +      L  A+  
Sbjct: 493 ILTDIQGLEDALGDMDFKVAGTKKG-ITALQMDIKIAGIDRSILERALEQARRG 545



 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 30/227 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R+++L    ++K A G+ +V +G T +L TAT      E +  +     +       G +
Sbjct: 14  RDLTLETGRLAKQAGGAVMVSYGGTMVLVTATASEEPREGIDFFPLTVDYEERLYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   ++    R+I R +R +          ++     +  D    
Sbjct: 74  P---GGFIKRE---GRPSEKAILSARLIDRPIRPLFPKFYRNDVHVVATVMSVDQDCPPN 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            A I GA  AL                     G + A+S G++   P+++    EDS   
Sbjct: 128 VAGIIGASAALMLSAI-------------PFAGPIGAVSVGLIDNRPVINPTLEEDSRSS 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           ++     T +  I+ V+  A+      +    ML        ++ ++
Sbjct: 175 LNLTVAGT-ANAIMMVEAGAKEVP---EDL--MLECIMQGHEEIKRI 215


>gi|305664512|ref|YP_003860799.1| putative polyribonucleotide nucleotidyltransferase [Maribacter sp.
           HTCC2170]
 gi|88708529|gb|EAR00765.1| putative polyribonucleotide nucleotidyltransferase [Maribacter sp.
           HTCC2170]
          Length = 737

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 79/230 (34%), Gaps = 20/230 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKH 56
           +RL GR+ +++R I           GS +   G+T  L T TL             +   
Sbjct: 317 LRLDGRKTDEIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLGTSRDANKIDMPSHEGE 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P  TG        S R+ G       +  RAL+ +V         + +  
Sbjct: 377 ENFYLHYNFPPFCTGEARPLRGTSRREVGHG----NLAQRALKGMVPED--CPYTVRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G +  A +    +A+ D    M    +   +  +  G   A+         + D
Sbjct: 431 EVLESNGSSSMATVCAGTMAMMDAGVQMTRPVSGIAMGLISDGDRYAV---------LSD 481

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           +   ED   D+D     T  G I   Q   +    S +     L  A++ 
Sbjct: 482 ILGDEDHLGDMDFKVTGTSEG-ITACQMDIKIKGLSYEILVNALKQAREG 530



 Score = 65.1 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 77/227 (33%), Gaps = 26/227 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           REIS+      K A GS +V+ G   LL T      +  V        +    A  G  P
Sbjct: 16  REISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQADVDFLPLTVDYREKFAAAGRYP 75

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KREA        +    R++ R LR +         Q++I   ++  D     
Sbjct: 76  ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKDYHAETQVMI--QLMSHDENV-- 125

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                    + + +  +   +         +  ++    G + G  +++    +    D+
Sbjct: 126 ---------MPEAMAGLAASAAIQLSDFPFECAISEARVGRVNGEFVINPTRAQLEESDI 176

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           +   +   +  ++ V+G  E    S++     +  A + I   I  Q
Sbjct: 177 EM-MIGASADSVMMVEG--EMDEISEEEMADAIKFAHEAIKVQIAAQ 220


>gi|307183198|gb|EFN70107.1| Polyribonucleotide nucleotidyltransferase 1, mitochondrial
           [Camponotus floridanus]
          Length = 689

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 89/249 (35%), Gaps = 17/249 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIR 52
           +R  GR  + +R+IS    +     GS + + G T ++ T  L+        + + M I 
Sbjct: 276 VRCDGRSPDGLRDISCQVDLFNPLHGSAVFQRGQTQVMCTVALDSLESALKMDAMSMLIS 335

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
             K       Y   P +T          GR G R      +  +ALRS++         I
Sbjct: 336 GVKEKNFFLHYEFPPYATNE----TGHVGRIGRREMGHGALAEKALRSILPKD--YPFTI 389

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            +  +V++++G +  A + G  +AL D    +   +    +  V K +            
Sbjct: 390 RLTSEVLESNGSSSMATVCGGSLALLDAGIPISSSAAGVAIGLVTKYNETNTDIDKY--K 447

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G    +Q   +            L  A     ++IK
Sbjct: 448 ILTDILGIEDYLGDMDFKIAGTKRG-FTALQADVKIPGVPLKIIMECLYQAIAAKREIIK 506

Query: 233 LQKDVISNE 241
           +  DVI   
Sbjct: 507 IMNDVIRTP 515



 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 58/176 (32%), Gaps = 25/176 (14%)

Query: 69  STGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--G 124
           +   R+    +    G    EI   R+I R++R +            I C+++  DG   
Sbjct: 27  AAAGRIPTNFLRRELGPTENEILTSRVIDRSIRPLFPEGFYYDT--HIMCNMLAVDGIND 84

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               AI GA  AL                     G V AI  GM+    I++    +   
Sbjct: 85  PDVIAINGASAALS-------------ISDIPWNGPVGAIRIGMIDNEFIINPTRRQIQD 131

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI----KLQKD 236
             ++     T    IV ++GSA      +      + L      +++     LQK 
Sbjct: 132 SILNMIVTATKHNLIVMLEGSANEIL--EQDLKKAIKLGVKECQNIVNAIANLQKA 185


>gi|182680095|ref|YP_001834241.1| polyribonucleotide nucleotidyltransferase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|257096681|sp|B2ICY4|PNP_BEII9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|182635978|gb|ACB96752.1| Polyribonucleotide nucleotidyltransferase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 715

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 91/242 (37%), Gaps = 18/242 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           +R+ GR    +R I     +   A GS L   G+T  L  ATL       + +   G   
Sbjct: 317 IRIDGRDVKTVRPILAEVGILPRAHGSALFTRGETQALVVATLGTGEDEQLIDNLEGTYR 376

Query: 58  -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R     ++  RA+  ++   A     I +  
Sbjct: 377 ERFLLHYNFPPYSVGEAGR----MGSPGRREIGHGKLAWRAIHPMLPTPAEFPYTIRVVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++ +++G +  A + G+ +AL D    ++  +    +  +L+G   A+         + D
Sbjct: 433 EITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGERYAV---------LSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T+ G I  +Q   +    +++     L  AK+    ++     
Sbjct: 484 ILGDEDHLGDMDFKVAGTEEG-ITSLQMDIKITGINEEIMRVALGQAKEGRLHILGEMAK 542

Query: 237 VI 238
            I
Sbjct: 543 AI 544



 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 77/238 (32%), Gaps = 42/238 (17%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R++ L    +++ A+G+    +G+T +L T     +++  V  +     +       G +
Sbjct: 16  RKLVLETGKIARQADGAIFATYGETTVLATVVSAKSVKPGVDFFPLTVNYQEKAFAAGRI 75

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   R   + R+I R +R +         Q+I+       +    
Sbjct: 76  P---GGYFKRE---GRPSERETLVSRLIDRPIRPLFPEGYRNETQVIVTVLAHDLENDPD 129

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             ++  +  AL                     G V A     + G   ++    E     
Sbjct: 130 ILSMVASSAAL-------------TLSGVPFMGPVGAARVAYVNGQYKINPTLDEVKDTA 176

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHF---------------FAMLNLAKDRIAD 229
           +D     T    ++     +E    S+D                  A++ LA+    +
Sbjct: 177 LDLVVAGTSDAVLMV---ESEAKELSEDVMLGAVMAGHSSFQPVIDAIIRLAEKAAKE 231


>gi|163745458|ref|ZP_02152818.1| polyribonucleotide nucleotidyltransferase [Oceanibulbus indolifex
           HEL-45]
 gi|161382276|gb|EDQ06685.1| polyribonucleotide nucleotidyltransferase [Oceanibulbus indolifex
           HEL-45]
          Length = 711

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 95/243 (39%), Gaps = 17/243 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +++R+I     +     GS L   G+T  L   TL         +  HG   +
Sbjct: 318 RIDGRRTDEIRDIVAETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+  +      I +  +
Sbjct: 378 NFLLHYNFPPYSVGEVGR----VGPPGRREVGHGKLAWRALQAVLPAATDFPYTIRLVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +++ D    ++       +  +L+      S  +     + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLILED---DGSYAI-----LSDI 485

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   + A  + +     L  AKD    ++      
Sbjct: 486 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKVAGITPEIMEKALAQAKDGRIHILGEMNKA 544

Query: 238 ISN 240
           +S 
Sbjct: 545 LSG 547



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 82/233 (35%), Gaps = 37/233 (15%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70
           ++L    V++ A+GS +   G+T ++   T   +            +T  Y     +   
Sbjct: 16  LTLETGKVARQADGSVIATLGETSVMANVTYARQQKP---GQDFFPLTVHYQEKYYAAGK 72

Query: 71  --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++ C V+  D      
Sbjct: 73  VPGGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL--DYGEDST 184
             A+  A  AL                    +G +A    G   G  I++   D  +D  
Sbjct: 128 MVAMIAASAALTISGA-------------PFRGPIAGCRVGYEGGDYILNPTIDDMQDLR 174

Query: 185 IDV----DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           ++     D     T    ++ V+  +E    S++     +  A ++I  +I L
Sbjct: 175 LNPEQRLDLVVAGTKDA-VMMVE--SEAYELSEEEMLGAVKFAHEQIQPVIDL 224


>gi|297584087|ref|YP_003699867.1| polyribonucleotide nucleotidyltransferase [Bacillus
           selenitireducens MLS10]
 gi|297142544|gb|ADH99301.1| polyribonucleotide nucleotidyltransferase [Bacillus
           selenitireducens MLS10]
          Length = 700

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 88/249 (35%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +   A GS L   G T  L   T  A  + ++   +   + 
Sbjct: 315 IRPDGRKVDEIRPLSSEVDILPRAHGSGLFTRGQTQALSVCTLGALGDVQILDGLGIEES 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G            G R      +  RAL  V+         I +  
Sbjct: 375 KRFMHHYNFPQFSVGE----TGPIRGPGRREIGHGALGERALEQVIPSEKDFPYTIRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           +V++++G T  A+I  + +A+                   +   VA I+ G++       
Sbjct: 431 EVLESNGSTSQASICASTMAMMAAGV-------------PITSPVAGIAMGLVKHGEDMT 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G +  +Q   +    +++   + L  A+D    ++ 
Sbjct: 478 VLTDIQGMEDALGDMDFKVAGTKDG-VTALQMDIKIEGINREVLKSALEQARDGRLKILD 536

Query: 233 LQKDVISNE 241
                I   
Sbjct: 537 NMLSAIPEP 545



 Score = 94.8 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 93/233 (39%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +S      +K A G+ +VK+GDT +L+TAT     + +P +     +       G +P
Sbjct: 15  RTLSFEVGKYAKQANGAVMVKYGDTTVLSTATGSKEPKDLPFFPLTVNYEERLYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +  +  
Sbjct: 75  ---GGFIKRE---GRPSDNAVLTSRLIDRPIRPLFPDGYRNDVQVISIVMSSDQNASSEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A ++ G + G  I++    + +  D+
Sbjct: 129 AAMIGSSMALS-------------ISDIPFGGPIAGVTVGRVNGEFIINPTTTQMADSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     T    +  V+  AE+    ++     +    D I  L+  Q+++I+ 
Sbjct: 176 DLIVAGTKDA-VNMVEAGAEQVP--EEDMMDAILFGHDEIKRLVAFQEEIIAE 225


>gi|285017812|ref|YP_003375523.1| polynucleotide phosphorylase [Xanthomonas albilineans GPE PC73]
 gi|283473030|emb|CBA15535.1| probable polynucleotide phosphorylase protein [Xanthomonas
           albilineans]
          Length = 702

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 92/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR  + +R IS+   V     GS L   G+T  +   TL       + +   G   
Sbjct: 315 VRIDGRALDTVRPISVKAGVLPRTHGSALFTRGETQAIVVTTLGTARDGQVIDAVSGEYK 374

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  A   R+ G      R+  R + +V+         I +  
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHG----RLAKRGVLAVMPTMEEFPYTIRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEGNDFV 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  AK     ++ 
Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALAQAKAGRLHILG 536

Query: 233 LQKDVISNE 241
                +++ 
Sbjct: 537 EMASALTSP 545



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 78/228 (34%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ +VK  DT LL TA    +  E    +     +       G +P 
Sbjct: 15  VTLETGEIARQAGGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +   I R+I R +R +         QII     +  D     A
Sbjct: 74  --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G   G  I++    +     ++
Sbjct: 129 ALIGASAALSLAGT-------------PFNGPIGAAKVGYKNGEYILNPTVSDLKDSQLE 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T +  ++     +E A  S+D     +      +  +I    +
Sbjct: 176 LVVAGTSNAVLMV---ESEAALLSEDVMLGAVTFGHREMQKVINAINE 220


>gi|224367585|ref|YP_002601748.1| polynucleotide phosphorylase/polyadenylase [Desulfobacterium
           autotrophicum HRM2]
 gi|257096686|sp|C0QHM6|PNP_DESAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|223690301|gb|ACN13584.1| PnpA [Desulfobacterium autotrophicum HRM2]
          Length = 695

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 87/246 (35%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  +++REI+    V     GS L   G+T +L   TL           +   +  
Sbjct: 313 RIDGRAFDEVREITCEVGVLPRPHGSALFTRGETQVLGVLTLGSGPDEQRIETLNGNETR 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +    S R  G       +  RAL  V+   A     I +  +
Sbjct: 373 NFMLHYNFPPFSVGECRRAGGPSRRDVGHG----NLAHRALARVLPDQADFEYTIRLVGE 428

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           V++++G +    +    +AL D                 +   V+ I+ G++       +
Sbjct: 429 VMESNGSSSMGTVCAGTLALMD-------------GGVPIAAPVSGIAMGLVSDADNTVV 475

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   +     +      L+ A+     ++K 
Sbjct: 476 LTDILGDEDHFGDMDFKVAGTEQG-ITALQMDIKIRELPKAVLVKALDQARIGRLHILKR 534

Query: 234 QKDVIS 239
               + 
Sbjct: 535 MLATLE 540



 Score = 78.6 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 85/229 (37%), Gaps = 28/229 (12%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           ++K A GS +V++G+T +L TA       + V       ++       G +P   GN  +
Sbjct: 21  IAKQASGSVIVQYGETIVLVTAVAAKEARDSVSFLPLTVEYQEKIYAAGRIP---GNYFR 77

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE   GR   +     R+I R +R + +       Q+I        +      A+ GA  
Sbjct: 78  REI--GRPSEKETLTARLIDRPIRPLFEKGWASEIQVIATVISTDKENDPDVLALVGASA 135

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
           AL                     G +A +  G + G  I +    E    D++     + 
Sbjct: 136 ALQM-------------SDIPFAGPIAGLRVGRIDGKFIANPTVQEMENSDIELVVAGSK 182

Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ---KDVISNE 241
           +G +V V+G A+    S+      +      +  LI+LQ   K  +  E
Sbjct: 183 TG-VVMVEGGAD--VVSEADMLEAIFFGHQAMQPLIQLQEDLKKALGKE 228


>gi|333029627|ref|ZP_08457688.1| Polyribonucleotide nucleotidyltransferase [Bacteroides coprosuis
           DSM 18011]
 gi|332740224|gb|EGJ70706.1| Polyribonucleotide nucleotidyltransferase [Bacteroides coprosuis
           DSM 18011]
          Length = 713

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 90/247 (36%), Gaps = 30/247 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR+  Q+R I           GS +   G+T  L T TL  K    I +        
Sbjct: 319 RLDGRKTTQVRPIWSEVDCLPGPHGSAVFTRGETQALCTVTLGTKSDEKIIDDVLCHGKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+ ++  +      I +  D
Sbjct: 379 RFLLHYNFPPFSTGEARPQRGVGRREVGHG----NLAHRALKRMIPEN--YPYVIRVISD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A + G  +AL D                 +K  V+ I+ G++        
Sbjct: 433 ILESNGSSSMATVCGGTLALMDAGVQ-------------IKKPVSGIAMGLIKNPGEDKY 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S D     LN AK+    ++
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSFDILEKALNQAKEGRMHIL 538

Query: 232 KLQKDVI 238
               + +
Sbjct: 539 DKILETL 545



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 88/236 (37%), Gaps = 24/236 (10%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWITAEYGMLPRS 69
           R I+L      K A+G+ +++ G+T +L T    ++ VP             ++    R 
Sbjct: 15  RTITLETGKLAKQADGAVMLRMGNTMMLATVCAAKDAVPGTDFMPLQVEYKEKFSAFGRF 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   +RE   GR         R++ RALR +         ++ ++  +  ADG      
Sbjct: 75  PGGFTRRE---GRASDYEILTCRLVDRALRPLFPDD--YHAEVYVNIILFSADG------ 123

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
                V + D L  +   +          G ++ +      G  I++  + +    D+D 
Sbjct: 124 -----VDMPDALAGLAASAALAVSDIPFHGPISEVRVARTDGKFIINPTFEQLEKADMDI 178

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ---KDVISNEV 242
               T   +I+ V+G  E +  S+      + +A + I    K Q    + + + V
Sbjct: 179 MVAATYE-NIMMVEG--EMSEVSEAELLEAMKVAHEAIKVHCKAQIELAEAVGSTV 231


>gi|156230391|gb|AAI52249.1| MGC174638 protein [Danio rerio]
          Length = 277

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 87/254 (34%), Gaps = 25/254 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  +L       A+GS LVK G+T ++     E  VP        G++  
Sbjct: 23  RPDGRELGEFRPTTLNINSISTADGSALVKIGNTTVICGIKAELAVPPSEA-QNKGYLVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQI----IID 115
              + P  +         +G  G ++Q   + I   + S  +++   L   +     ++ 
Sbjct: 82  NVDLPPLCSS-----RFGAGPPGEQAQAASQFIADVIESSDLINSEELCIEKAKLCWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           CD+  +  DG    A IT    AL                 E    K +  ++ +  V +
Sbjct: 137 CDIMCLDYDGNLLDACITVLLAALKTAQLPEVTINKETDLAEVDIEKKRRLKINRHPVGS 196

Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
                     IVD    E+S        V  +   +  V       + S +     +N A
Sbjct: 197 SFAVFDDSIIIVDPTAEEESLSTALMTVVTDEEDRLCAVHKPG-GTSLSGEKLQHCINRA 255

Query: 224 KDRIADLIKLQKDV 237
             R  ++ KL   V
Sbjct: 256 ITRNKEIRKLLDKV 269


>gi|90420519|ref|ZP_01228426.1| polyribonucleotide nucleotidyltransferase [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335247|gb|EAS49000.1| polyribonucleotide nucleotidyltransferase [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 710

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 88/247 (35%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R+I     +   A GS L   G+T  L  ATL         +   G    
Sbjct: 317 RIDGRDLKTVRKIVSEAGILPRAHGSALFTRGETQALVVATLGTGEDEQFVDALTGTYKE 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RALR ++         I    +
Sbjct: 377 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRALRPMLPAPEQFPYTIRAVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           V +++G +  A + G  +AL D                 LK  VA I+ G++        
Sbjct: 433 VTESNGSSSMATVCGTSLALMDAGV-------------PLKRSVAGIAMGLIKEDERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     L+ AK     +++ 
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTSEG-ITSLQMDIKIQGITEEIMQIALDQAKGGRLHILQE 538

Query: 234 QKDVISN 240
               +S 
Sbjct: 539 MGQALSE 545



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 81/229 (35%), Gaps = 31/229 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R ++L    +++ A+G+ L  +G+T +L T       +  +  +     +   T   G +
Sbjct: 14  RPLTLETGKIARQADGAVLATYGETVVLATVVSAKQPKPGLDFFPLTVNYQEKTFAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR   +   + R+I R +R +         Q+++   V+Q D    
Sbjct: 74  P---GGFFKRE---GRPSEKETLVSRLIDRPIRPLFAQGYKNETQVVVT--VLQHDLEND 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  AL                     G +     G + G   ++    E S 
Sbjct: 126 PDVLAMVAASAAL-------------TLSGVPFMGPIGGARVGYINGEYKLNPHVDEMSE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
             +D     T+ G ++ V+  +E    ++D     +         +I  
Sbjct: 173 SQLDLVVAGTE-GAVLMVE--SEAHELAEDIMLGAVMFGHRGFQPVIDA 218


>gi|116072761|ref|ZP_01470027.1| RNA binding S1 [Synechococcus sp. BL107]
 gi|116064648|gb|EAU70408.1| RNA binding S1 [Synechococcus sp. BL107]
          Length = 721

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 36/238 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66
           REI LT    +  A GS LV+ GDT +L TAT                +  +Y       
Sbjct: 13  REIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSSG----RDGIDFLPLICDYEERLYAA 68

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----AD 122
            R  G+ ++REA   R   R+    R+I R +R +         Q++  C  +     AD
Sbjct: 69  GRIPGSYMRREA---RPPERATLTCRLIDRPMRPLFPSWMRDDLQVVATCLSLDERVPAD 125

Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
                 A+TGA +A                      G +AA+  G+L    +++  Y E 
Sbjct: 126 ----VLAVTGASIATLLAGI-------------PFNGPMAAVRVGLLGDDFVLNPSYREI 168

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
              D+D     T  G +V V+  A +    +      ++   + I +LIK Q+ ++ +
Sbjct: 169 ERGDLDLVVAGTADG-VVMVEAGANQ--LPEQDVIEAIDFGYEAIQELIKAQETLLKD 223



 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 94/247 (38%), Gaps = 29/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-----NTK 55
           R+ GR  +++R+IS    V  +   GS L + G T +L+TATL              NT+
Sbjct: 323 RVDGRGLDEVRQISAMAGVLPRRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLHPNTE 382

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P S G      +   R+ G       +  RA+  V+         + + 
Sbjct: 383 KLYLH-HYNFPPYSVGETRPMRSPGRREIGHG----ALAERAILPVLPEKDTFPYVVRVV 437

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V+ ++G T   ++ G+ ++L D                 LK  V+  + G++      
Sbjct: 438 SEVLSSNGSTSMGSVCGSTLSLMDAGV-------------PLKAPVSGAAMGLIKEGKDI 484

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     ++ G I  +Q   +            +N A+     ++
Sbjct: 485 KILTDIQGIEDFLGDMDFKVAGSEKG-ITALQMDMKITGLPVKVVADAVNQARPARLHIL 543

Query: 232 KLQKDVI 238
           +   + I
Sbjct: 544 EKMLEAI 550


>gi|262370055|ref|ZP_06063382.1| polyribonucleotide nucleotidyltransferase [Acinetobacter johnsonii
           SH046]
 gi|262315094|gb|EEY96134.1| polyribonucleotide nucleotidyltransferase [Acinetobacter johnsonii
           SH046]
          Length = 697

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 94/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L T TL       +      TK  
Sbjct: 317 RIDGRDTKTVRAIDVQVGVLGRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +      R+ G      R+  R +++V+  +      I I  D
Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA ++L D                 LK  VA I+ G++  G     
Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G I  +Q   +    +++   A LN A      ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEAALNQAYAGRMHILNE 538

Query: 234 QKDVIS 239
              VIS
Sbjct: 539 MNQVIS 544



 Score = 69.0 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 75/236 (31%), Gaps = 43/236 (18%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           + L    V++ A  + ++  G   +L         P          +T  Y     + G 
Sbjct: 18  VVLETGRVARQAN-TVVITMGGVQVLVAIV---AQPKAKAGQDFFPLTVNYQEKQYAAGR 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD----GG 124
                 KRE   GRQ      I R+I R +R +          I +   VI +D    G 
Sbjct: 74  IPGGYGKRE---GRQSEAETLISRLIDRPIRPLFPEGFYNE--IQVTATVISSDKTMEGD 128

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
              AA+ GA  A+                     G +A    G++ G  I++    +   
Sbjct: 129 I--AAMLGASAAMSIAGV-------------PFAGPIAGARVGLINGEYILNPTLEQLKE 173

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233
            D+D     T++  ++     +E    S+D            + +A   I +    
Sbjct: 174 SDLDLVVAGTEAAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAA 226


>gi|146278950|ref|YP_001169109.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145557191|gb|ABP71804.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 740

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 94/248 (37%), Gaps = 27/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I     V     GS L   G+T  L   TL       I +  HG   +
Sbjct: 344 RIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVTTLGTGEDEQIIDALHGNSRS 403

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+  +      I +  +
Sbjct: 404 NFLLHYNFPPYSVGEVGRF----GPPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVSE 459

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP- 173
           + +++G +  A++ G  +++ D                 LK  VA ++ G++    G   
Sbjct: 460 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEDDGKWA 506

Query: 174 -IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T++G I  +Q   + A  +       L  AKD    ++ 
Sbjct: 507 VLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPAIMEQALAQAKDGRMHILG 565

Query: 233 LQKDVISN 240
                +S+
Sbjct: 566 EMSKALSS 573



 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 76/231 (32%), Gaps = 33/231 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+GS +   G+T ++   T     +     +     +       G +P 
Sbjct: 42  LTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLTVHYQERYYAAGKVP- 100

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++   V+  D      
Sbjct: 101 --GGFFKREA---RPSEKETLTSRLIDRPIRPLFVDGF--KNEVLLIVTVLSHDLVNEPD 153

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE----D 182
             A+  A  AL                     G + A   G   G  +++ D  +     
Sbjct: 154 IVAMIAASAAL-------------TISGVPFMGPIGAARVGYANGEYVLNPDVDDMQKLR 200

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
              +   + V+  +   V +  S E    S+      +    + +  +I +
Sbjct: 201 ENPEQRLDLVIAGTKDAVMMVES-EAYELSEAEMLGAVKFGHEAMQPVIDM 250


>gi|238897558|ref|YP_002923237.1| polynucleotide phosphorylase/polyadenylase [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|259534133|sp|C4K3E6|PNP_HAMD5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|229465315|gb|ACQ67089.1| polynucleotide phosphorylase/polyadenylase [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 716

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 95/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR ++ +R +     +     GS L   G+T  L T TL     +     +   +  
Sbjct: 315 RIDGRDKDMIRALHACTGILPRTHGSALFTRGETQALVTTTLGTSRDLQTIDDLMGERSD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G +    R+  RAL +V+         + +  +
Sbjct: 375 SFLFHYNFPPYSVGETGMLGSPKRREIGHA----RLAKRALMAVMPNIEEFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKSAVAGIAMGLVKEEDKFVV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    + +   + L+ AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGTSEG-ITALQMDMKIQGITPEIMQSALHHAKAARLHILSV 536

Query: 234 QKDVISN 240
              VIS+
Sbjct: 537 MNQVISS 543



 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 73/234 (31%), Gaps = 31/234 (13%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           ++++   +  + A  + +V    T +L T   +++            ++  Y     + G
Sbjct: 15  KVTIETGMMARQATAAVMVIIEGTAVLVTVVAQKEAKP---GQTFFPLSVHYQERSYAVG 71

Query: 72  ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
               N  +RE    R         R+I R +R +     L   Q+I     +        
Sbjct: 72  RIPSNFFRRET---RPNEGETLTSRLIDRPIRPLFPKDFLNEVQVIATVVSVNPKVNPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA   L                       + A   G + G  +++    E      
Sbjct: 129 VAMIGASAVLSLSGI-------------PFHEPIGAARVGFINGAYVLNPTPEE--LKQS 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
           D N V+  + + V +  S E    +++     +    ++    I  +  L K  
Sbjct: 174 DLNLVVAGTKNAVLMVES-EANILTEEQMLGAIIFGHEQQQIVIESINDLVKKA 226


>gi|303232220|ref|ZP_07318919.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae
           PB189-T1-4]
 gi|302481630|gb|EFL44691.1| polyribonucleotide nucleotidyltransferase [Atopobium vaginae
           PB189-T1-4]
          Length = 760

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 30/243 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR------NTK 55
           R+ GR   ++R + +         GS L + G T +L+ ATL   +  W R         
Sbjct: 319 RVDGRSATEVRPLMIKPDYLPLVHGSGLFQRGQTQVLSVATLG-MLSEWQRLDTIEPQEG 377

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P  TG   +  +   R+ G       +  RAL  V+         I + 
Sbjct: 378 KRYMH-HYNFPPYCTGETGRLGSPKRREIGHG----NLAERALLPVIPSEDEFPYAIRVV 432

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            +V++++G +  A+  G+ +AL D                 +   V+ ++ G++      
Sbjct: 433 SEVMESNGSSSMASTCGSTLALMDAGV-------------PIVRPVSGVAMGLIQEEGKT 479

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I  +Q   +    + +     L  A     +++
Sbjct: 480 VVLTDIQGLEDFLGDMDFKVTGTTKG-ITAMQMDNKATGLTPEILRQALQQAHVGRMEIL 538

Query: 232 KLQ 234
              
Sbjct: 539 DAM 541



 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 77/232 (33%), Gaps = 28/232 (12%)

Query: 15  SLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRST 70
            L    ++K A G CLV  GD+ +  T  + ++      +             G +P   
Sbjct: 16  KLETGELAKQATGECLVSCGDSTVNVTVVVSKERKDYDFFPLTVDFIEKMYAVGRIP--- 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G  +KRE+   R   ++    RMI R +R           QI+    V        T  +
Sbjct: 73  GGYLKRES---RPTEKATLTARMIDRPIRPAFPDGFRNEVQIVAMPLVADQFNPVDTICV 129

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGYPIVDLDYGEDSTIDVD 188
            GA  A+                    +G +A +  G     G  IV+  Y E    D+D
Sbjct: 130 MGASCAMR-------------TGGVPFEGPLACVRIGRNTQTGEFIVNPTYEERKHSDLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
               +  S   + +   A     S++   + +   +  IA     Q+   + 
Sbjct: 177 LE--LAGSATFISM-LEAAAQEISEEDMLSAMAFGQQAIAAFCAEQEKFFAK 225


>gi|86355771|ref|YP_467663.1| polynucleotide phosphorylase/polyadenylase [Rhizobium etli CFN 42]
 gi|123738432|sp|Q2KE00|PNP_RHIEC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|86279873|gb|ABC88936.1| polyribonucleotide nucleotidyltransferase protein [Rhizobium etli
           CFN 42]
          Length = 712

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 88/243 (36%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 316 RIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++  +      + +  +
Sbjct: 376 RFLLHYNFPPFSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   + A  +++     L  AK   A ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKIAGITEEIMKVALGQAKGGRAHILGEMAKA 541

Query: 238 ISN 240
           I+ 
Sbjct: 542 ITE 544



 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 68/220 (30%), Gaps = 27/220 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ L  +G+T +L T       +     +     +   T   G +
Sbjct: 14  RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR       + R+I R +R +         Q+++       +    
Sbjct: 74  P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVVQHDLENNPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             ++  +  AL                     G V     G + G  +++    E     
Sbjct: 128 ILSMIASSAAL-------------TLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESS 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           +D     T    ++     +E     +D     +      
Sbjct: 175 LDLVVAGTYDAVLMV---ESEAKELPEDVMLGAVMFGHKG 211


>gi|310827652|ref|YP_003960009.1| hypothetical protein ELI_2063 [Eubacterium limosum KIST612]
 gi|308739386|gb|ADO37046.1| hypothetical protein ELI_2063 [Eubacterium limosum KIST612]
          Length = 692

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 92/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R   R+ +++R I+          GS L   G+T +L+ ATL    + +V   + N   
Sbjct: 310 IRPDNRKMDEVRPITAKIDYIPRVHGSGLFTRGETQVLSIATLGVLRDAQVLDGLSNDTE 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y     S G      +   R+ G       +  RAL  ++         I +  
Sbjct: 370 KRYMHQYNFPGYSVGEARPMRSPGRREIGHG----ALAERALLPMIPPEEEFPYAIRVVS 425

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V+ ++G T  A++ G+ +AL                   LK  VA ++ G++       
Sbjct: 426 EVLSSNGSTSQASVCGSSLALMAAGV-------------PLKKPVAGVAMGLIKEDEKLA 472

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +     ++     L  A+     ++ 
Sbjct: 473 ILTDIQGMEDFLGDMDFKVAGTKDG-ITAIQMDIKIHGIDREILTQALEQARIGRMHILG 531

Query: 233 LQKDVISNE 241
           +  + IS  
Sbjct: 532 IMNEEISEP 540



 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 92/233 (39%), Gaps = 27/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R   +    V++ A+GS ++++G+T +L  A       E +  +  +  +       G +
Sbjct: 11  RPFRVEIGEVAQLAKGSAMIRYGETSVLAIAAASKKPREGMDFFPLSVDYEEKQYAVGKI 70

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   ++    R+I R +R +         Q++     ++ D    
Sbjct: 71  P---GGFLKRE---GRPSEKAILNSRLIDRPIRPLFPKGFRNDVQVVTTVMSVEQDNAPE 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA +AL                     G   +++ G++ G  I++    +    D
Sbjct: 125 IAAMIGASIALS-------------ISDIPFDGPTGSVAVGLIDGEFILNPTEAQREVSD 171

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +      T    I+ V+  A     S++     +  A + I  ++  Q+++++
Sbjct: 172 LSLTVAGTKDA-IMMVEAGANE--VSEETMLEAILFAHEEIKKIVAFQEEIVA 221


>gi|300794376|ref|NP_001179126.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Bos
           taurus]
 gi|297480320|ref|XP_002691377.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1 [Bos taurus]
 gi|296482678|gb|DAA24793.1| polyribonucleotide nucleotidyltransferase 1 [Bos taurus]
          Length = 783

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 86/249 (34%), Gaps = 19/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR--------N 53
           R  GR    +R I+    + K   GS L + G T +L T T +     +           
Sbjct: 358 RCDGRDLTSLRNINCEVDMFKILHGSSLFQRGQTQVLCTVTFDSLESNFKSDRIITAING 417

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   ++ R+ G       +  RAL  V+         I 
Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGINRRELGHG----ALAERALYPVIPKDF--PFTIR 471

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  V K        G +  Y 
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAIGLVTKNSP---DKGEIEDYR 528

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T  G I  +Q   +            +  A     ++++
Sbjct: 529 LLTDILGIEDYHGDMDFKIAGTSKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587

Query: 233 LQKDVISNE 241
           +    IS  
Sbjct: 588 IMNKTISKP 596



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 31/205 (15%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R++ ++     ++A+GS +V+ GDT ++ TA   T             +    A  G +P
Sbjct: 54  RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
               N ++RE  S     +     R+I R++R +         QI+  C+++  DG    
Sbjct: 114 ---TNYLRREIGS---SDKEILTSRVIDRSIRPLFPAGYFYDTQIL--CNLLAVDGVNEP 165

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI GA VAL                     G + A+  GM+ G  +V+    E    
Sbjct: 166 DVLAINGASVALS-------------LSDIPWNGPIGAVRIGMIDGECVVNPTRKE--MA 210

Query: 186 DVDANFVMTD--SGHIVEVQGSAER 208
           +   N V+T      IV ++ SAE 
Sbjct: 211 NSTLNLVVTGAPKSQIVMLEASAEN 235


>gi|237753403|ref|ZP_04583883.1| polynucleotide phosphorylase/polyadenylase [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229375670|gb|EEO25761.1| polynucleotide phosphorylase/polyadenylase [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 736

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 87/243 (35%), Gaps = 22/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMWIRNTKHG- 57
           +R  GR   ++R IS+   +   A  S L   G T   ++ T   E     +   T  G 
Sbjct: 346 IRADGRGLKEVRPISIETNILPKAHSSVLFTRGQTQALVVCTLGGEMDAQSYELLTDKGT 405

Query: 58  ---WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y   P S G  +   A   R+ G       +  RAL   V       + I +
Sbjct: 406 SKERFMVHYNFPPFSVGEAIPIGATGRRELGHG----NLAKRALECSVINGD--QKTIRL 459

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++++++G +  A++ G  +AL               +  V +G   A+         +
Sbjct: 460 VSEILESNGSSSMASVCGGSLALAAADIECTSLIAGVAMGLVCEGEKYAV---------L 510

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED   D+D     + SG I  +Q   +    S +     L  AK+    ++++ 
Sbjct: 511 TDIMGLEDHDGDMDFKVAGSKSG-ITALQMDIKLGGLSTEILECALLQAKEARFHILEIM 569

Query: 235 KDV 237
           +  
Sbjct: 570 ESA 572



 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 81/251 (32%), Gaps = 57/251 (22%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATL-------EEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           V+K A GS   K G+  LL T  +       E+ +P+ ++  +  +     G  P   G 
Sbjct: 20  VAKQASGSVYYKSGNNVLLATLAVDCDCIVEEDFLPLTVQYIEKAYAA---GKFP---GG 73

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            +KREA   + G       R++ R+LR +         QI I   V+ AD          
Sbjct: 74  YIKREA---KPGDFETLTARIVDRSLRPLFPKDYCYPTQITI--MVLSADND-------- 120

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
              A    L      +  +     L   V  +  G +    +V+    E     +D  FV
Sbjct: 121 ---ADLQLLALNAASAALYTSEIPLNFAVNGVRIGRIGNEFVVNPSLKEMEQSTLDL-FV 176

Query: 193 MTDSGHIVEVQGSAERAT---------------------------FSQDHFFAMLNLAKD 225
              +  ++ ++                                   ++      L +AK 
Sbjct: 177 SGVNEDLLMIEMRTFGGVDIQTPSNPLSLVTTLMEDKKAEFSANELTEIELMQALEIAKT 236

Query: 226 RIADLIKLQKD 236
            I+   KL ++
Sbjct: 237 HISKKSKLVEE 247


>gi|254787145|ref|YP_003074574.1| polynucleotide phosphorylase/polyadenylase [Teredinibacter turnerae
           T7901]
 gi|259534168|sp|C5BPV5|PNP_TERTT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|237684870|gb|ACR12134.1| polyribonucleotide nucleotidyltransferase [Teredinibacter turnerae
           T7901]
          Length = 705

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 88/248 (35%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R + +   V     GS L   G+T  L  ATL           +      
Sbjct: 315 RIDGRDTKTVRPLQVEVGVLPKVHGSALFTRGETQALVVATLGSARDAQIIDALEGEHRD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R + +++         + +  +
Sbjct: 375 NFMLHYNFPPYSVGE-CGRMGATGR---REIGHGRLARRGVAAMLPKEDQFPYTMRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G+ +AL D                 LK  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGSSLALMDAGV-------------PLKAPVAGIAMGLVKEENGFAV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     L  A      ++  
Sbjct: 478 LTDILGDEDHLGDMDFKVAGTANG-VTALQMDIKIEGITEEIMETALEQALHARLHILSE 536

Query: 234 QKDVISNE 241
              VI+  
Sbjct: 537 MNAVIAQP 544



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 73/229 (31%), Gaps = 28/229 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           I+L    +++ A G+ L   G T +L T             +  +  +       G +P 
Sbjct: 15  ITLETGRIARQATGAVLASMGKTSVLCTVVGAKEASPGQDFFPLSVHYQEKAYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +     R+I R +R +     +   Q++      + D      
Sbjct: 74  --GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPDGFVNEVQVVCTVVAAEKDVDPDIC 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDSTIDV 187
           A+ G   AL                     G + A   G       +++  Y   ++ ++
Sbjct: 129 AMIGTSAALAISGI-------------PFNGPIGAARVGYTQADGYLLNPTYQALASSEL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D     T    ++     +E     +D     +  A   +  +++   +
Sbjct: 176 DMVVAGTQDAVLMV---ESEANELPEDIMLGAVLYAHQEMQAVVQAVNE 221


>gi|260436528|ref|ZP_05790498.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           8109]
 gi|260414402|gb|EEX07698.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           8109]
          Length = 721

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 93/238 (39%), Gaps = 36/238 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66
           REI LT    +  A GS LV+ GDT +L TAT                +  +Y       
Sbjct: 13  REIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSGG----RDGIDFLPLICDYEERLYAA 68

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----AD 122
            R  G+ ++RE+   R   R+    R+I R +R +         Q++  C  +     AD
Sbjct: 69  GRIPGSYMRRES---RPPERATLTARLIDRPMRPLFPSWLRDDLQVVATCLSLDERVPAD 125

Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
                 A+TGA +A                      G +AA+  G+L    +++  Y E 
Sbjct: 126 ----VLAVTGASIATLLAGI-------------PFNGPMAAVRVGLLGDDFVLNPSYREI 168

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
              D+D     T  G +V V+  A +    +      ++   + I +LIK Q+ ++ +
Sbjct: 169 ERGDLDLVVAGTPDG-VVMVEAGANQ--LPEQDVIEAIDFGYEAICELIKAQEQLLKD 223



 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 95/247 (38%), Gaps = 29/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-----NTK 55
           R+ GR  +++R+IS    V  +   GS L + G T +L+TATL              NT+
Sbjct: 323 RVDGRGLDEVRQISAMAGVLPRRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLHPNTE 382

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P S G      +   R+ G       +  RA+  V+         + + 
Sbjct: 383 KLYLH-HYNFPPYSVGETRPMRSPGRREIGHG----ALAERAILPVLPEKDTFPYVVRVV 437

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V+ ++G T   ++ G+ ++L D                 LK  V+  + G++      
Sbjct: 438 SEVLSSNGSTSMGSVCGSTLSLMDAGV-------------PLKAPVSGAAMGLIKEGDEV 484

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     ++ G I  +Q   +    S       +N A+     ++
Sbjct: 485 RILTDIQGIEDFLGDMDFKVAGSEKG-ITALQMDMKITGLSVKTVAEAVNQARPARLHIL 543

Query: 232 KLQKDVI 238
           +   + I
Sbjct: 544 EKMLEAI 550


>gi|323138133|ref|ZP_08073206.1| polyribonucleotide nucleotidyltransferase [Methylocystis sp. ATCC
           49242]
 gi|322396595|gb|EFX99123.1| polyribonucleotide nucleotidyltransferase [Methylocystis sp. ATCC
           49242]
          Length = 717

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 92/242 (38%), Gaps = 18/242 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           +R+ GR    +R I     V     GS L   G+T  L  ATL         ++  G   
Sbjct: 315 IRIDGRDVKTVRPIVAEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQFVDSLEGTYK 374

Query: 58  -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R     ++  RA+R ++  +A     + +  
Sbjct: 375 ERFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPAAAEFPYTLRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++ +++G +  A + G  +AL D    ++  +    +  +L+G   A+         + D
Sbjct: 431 EITESNGSSSMATVCGTSLALMDAGVPLKAPTAGIAMGLILEGERFAV---------LSD 481

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T +G +  +Q   + A  +++     L  AKD    ++     
Sbjct: 482 ILGDEDHLGDMDFKVAGTSNG-VTSLQMDIKIAGITEEIMKVALAQAKDGRLHILGEMAK 540

Query: 237 VI 238
            +
Sbjct: 541 AL 542



 Score = 88.2 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 73/227 (32%), Gaps = 27/227 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R++ L    V++ A+G+ +  +G+T +L T  +  K P          +T  Y     + 
Sbjct: 14  RKLVLETGKVARQADGAVMASWGETTVLATV-VSAKAPK--PGQDFFPLTVNYQEKAFAA 70

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G       KRE   GR   R   + R+I R +R +         Q+I+       +    
Sbjct: 71  GRIPGGYFKRE---GRPSERETLVSRLIDRPIRPLFPDGYRCDTQVIVTVLSHDLENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                     G V     G + G   ++    E    D
Sbjct: 128 ILAMVAASAAL-------------TLSGVPFMGPVGGARVGYINGQLKLNPTIEEMKLSD 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +D     T    ++     +E    S++     +         +I  
Sbjct: 175 LDLVVAGTSDAVLMV---ESEAKELSEETMLEAVMTGHRGFQPVIDA 218


>gi|330895301|gb|EGH27639.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. japonica str. M301072PT]
          Length = 701

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 26/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R++++++  + +    I +  +
Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA +AL D    M             K  VA I+ G++  G     
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAI 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A + 
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 530



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
           ++L    +++ A G+ LV   D   +L T    ++       +  +  +   T   G +P
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR   +     R+I R +R +     +   Q++              
Sbjct: 75  ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSPSKKIDPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
           AA+ G   AL                     G V A           +++  Y +     
Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T    ++     +E    ++D     +  A D    +I   K+
Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 222


>gi|224001004|ref|XP_002290174.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973596|gb|EED91926.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 172

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 57/180 (31%), Gaps = 28/180 (15%)

Query: 1   MRLSGRQENQMREISLTRR------------VSKYAEGSCLVKFGDTHLLTTATLE-EKV 47
           +R  GR+ +++R +S                 +    GS LV  G T +L       +  
Sbjct: 8   LRSDGRRPHEIRHMSCHLGALPSTTACGSALPTSACSGSALVSMGLTQVLCVVRGPSDAG 67

Query: 48  PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL 107
                      +       P S      R   +     R  E   ++  AL + + L   
Sbjct: 68  RRTEELPDRATLEVTMRTSPFSPPG--DRRVTNPTSDRRLIEQSHLLQTALSASILLHLY 125

Query: 108 GSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG 167
              +I +   V+  DGG   AAI  A +AL D                 LK  V A S G
Sbjct: 126 PKSKISVTVMVLADDGGRLEAAINAATLALIDAGI-------------PLKDMVCACSAG 172


>gi|209883656|ref|YP_002287513.1| polyribonucleotide nucleotidyltransferase [Oligotropha
           carboxidovorans OM5]
 gi|226702670|sp|B6JCR8|PNP_OLICO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|209871852|gb|ACI91648.1| polyribonucleotide nucleotidyltransferase [Oligotropha
           carboxidovorans OM5]
          Length = 714

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 89/241 (36%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     V   A GS L   G+T  L   TL         ++  G    
Sbjct: 316 RIDGRDLKTVRPIVAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDSLAGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  V+         + +  +
Sbjct: 376 TFLLHYNFPPFSVGETGR----IGSPGRREIGHGKLAWRAIHPVLPAHHEFPYTLRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G+ +AL D    ++  +    +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGDRFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G +  +Q   + A  +++     L  AKD    ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTEKG-VTSLQMDIKIAGITEEIMKVALTQAKDGRMHILGEMAKA 541

Query: 238 I 238
           +
Sbjct: 542 L 542



 Score = 85.5 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 79/236 (33%), Gaps = 38/236 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + L    V++ A+G+ +  +G+T ++ T     T +E +        +   T   G +
Sbjct: 14  RPLKLETGKVARQADGAVIATYGETVVMATVVSAKTPKEGIDFLPLTVNYQEKTYAAGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +   + R+I R +R +         Q+I+       +    
Sbjct: 74  P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFADGYRCDTQVIVTTLSHDMENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                     G V A     +    I++    E     
Sbjct: 128 IVAMVAASAAL-------------TLSGVPFMGPVGAARVAFVNNEFILNPTLDEMVDTQ 174

Query: 187 VDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAML----NLAKDRIAD 229
           +D     T +  ++ V+  A+            F   HF  +L     LA+    +
Sbjct: 175 LDLVVAGTATA-VLMVESEAKELPEEIMLGAVMFGHKHFQPVLKAIIELAEQAAKE 229


>gi|187610327|sp|Q1QS60|PNP_NITHX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 720

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 92/243 (37%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I     V   A GS L   G+T  +   TL           +  T   
Sbjct: 316 RIDGRDAKTVRNILAEVGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDALSGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      ++  RA+  V+         I +  +
Sbjct: 376 TFLLHYNFPPYSVGETGRLGSTKRREIGHG----KLAWRAIHPVLPPHHEFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA ++L D    ++  +    +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGSRYAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   + A  +++     L  A++    ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTEVG-ISSLQMDIKIAGITEEIMKVALAQAREGRIHILGEMAKA 541

Query: 238 ISN 240
           ++N
Sbjct: 542 LTN 544



 Score = 85.5 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 80/238 (33%), Gaps = 42/238 (17%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ +  +G+T +L T     T  E V        +   T   G +
Sbjct: 14  RPLKLETGKIARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLTVDYQEKTYAAGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +   + R+I R +R +         Q+I+       +    
Sbjct: 74  P---GGYFKRE---GRPSEKETLVSRLIDRPVRPLFADGWRNETQVIVTVLSHDMENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                    +G + A   G +    +++    E   +D
Sbjct: 128 VLAMVAASAALTLSGA-------------PFRGPIGAARVGFMNDEYVLNPTLDE--MVD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHF---------------FAMLNLAKDRIAD 229
                V+  +   V +  S E    S+D                  A++ LA+    +
Sbjct: 173 TQLELVVAGTADAVLMVES-EAKELSEDIMLGAVMFGHRHFQPVINAIIELAEKAAKE 229


>gi|126664893|ref|ZP_01735877.1| polynucleotide phosphorylase/polyadenylase [Marinobacter sp. ELB17]
 gi|126631219|gb|EBA01833.1| polynucleotide phosphorylase/polyadenylase [Marinobacter sp. ELB17]
          Length = 706

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 87/242 (35%), Gaps = 18/242 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R I +   +   A GS L   G+T  + T TL     M I +   G    
Sbjct: 318 RIDGRDTKTVRPIKIEVGILPGAHGSALFTRGETQAIVTTTLGTSRDMQIIDALEGESKD 377

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      R+  R L +V+         I    +
Sbjct: 378 PFLFHYNFPPYSVGEAGRMMGPGRREIGHG----RLAKRGLLAVMPTVEEFPYTIRAVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G+ +AL D    ++       +  V +G   AI         + D+
Sbjct: 434 ITESNGSSSMASVCGSSLALMDAGVPIKSAVAGIAMGLVKEGDKFAI---------LTDI 484

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   +    + +     L  A      ++     V
Sbjct: 485 LGDEDHLGDMDFKVAGTKEG-ITALQMDIKINGITDEIMELALEQAYGARQHILGEMNKV 543

Query: 238 IS 239
           I+
Sbjct: 544 IA 545



 Score = 55.9 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 80/251 (31%), Gaps = 45/251 (17%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ LV   D  +L T    ++       +     +   T   G +P 
Sbjct: 17  VTLETGRIARQATGAVLVTIDDISVLGTVVGAKEAKPGQGFFPLTVNYTEKTYSVGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KREA   R   +     R+I R +R +     +   Q+++              
Sbjct: 76  --GGFFKREA---RPTEKETLTSRLIDRPIRPLFPNGFMNEVQVVLTV------------ 118

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187
            ++       D    +   +         +G + A   G        ++  + E ST  +
Sbjct: 119 -MSANKTQDPDIAAMLAASAALAISGIPFEGPIGASRVGFTNERGYFLNPTHEERSTSLL 177

Query: 188 DANFVMTDSGHI-VEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL------ 233
           D     T+   + VE Q      + ++D            +  A   I +          
Sbjct: 178 DMIVAGTEDAVLMVESQA----QSLTEDQMLGAVLFAHQEMQTAVSGIKEFAAEIGKPRW 233

Query: 234 --QKDVISNEV 242
             Q + ++ E+
Sbjct: 234 EWQAEAVNAEL 244


>gi|57239082|ref|YP_180218.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58579025|ref|YP_197237.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia ruminantium
           str. Welgevonden]
 gi|81352951|sp|Q5HBH6|PNP_EHRRW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|57161161|emb|CAH58074.1| polyribonucleotide nucleotidyltransferase [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58417651|emb|CAI26855.1| Polyribonucleotide nucleotidyltransferase [Ehrlichia ruminantium
           str. Welgevonden]
          Length = 789

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 90/245 (36%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  N +R+I +   V     GS L   G+T  L    L           +   +  
Sbjct: 323 RIDGRAFNGIRDIEIEIDVLPKTHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 382

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P + G      A     G R     ++  +A+R V+   +     I +  +
Sbjct: 383 NFLLHYNFPPYAVGE----SAALRAPGRREIGHGKLAWKAIRYVLPEKSDFPYTIRVVSE 438

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + ++DG +  A + GA +AL D                 +K  VA I+ G++  G     
Sbjct: 439 ITESDGSSSMATVCGASLALMDTGV-------------PIKAPVAGIAMGLIKEGEKFII 485

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T SG I  +Q   + +  S +     L  AKD    ++  
Sbjct: 486 LSDILGDEDHLGDMDFKVAGTSSG-ITALQMDMKISGISIEVIEKSLLQAKDGRMHILDK 544

Query: 234 QKDVI 238
              VI
Sbjct: 545 MNLVI 549



 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 13/129 (10%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
           +++ A G+ +V +G T +L+T      +E V       +    +   G +P   G  +KR
Sbjct: 23  IARQANGAVVVTYGGTTVLSTVVAGKAKEPVDFLPLTVQFVAKSYAVGKIP---GGFLKR 79

Query: 77  EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--RTAAITGAW 134
           E   G+   R   I R+I R++R +          I+  C+++  D  T     A+ GA 
Sbjct: 80  E---GKPSDRETLISRLIDRSIRPLFPSGFYDEVSIV--CNLLSYDTVTPPEVTALIGAT 134

Query: 135 VALHDCLQH 143
            AL      
Sbjct: 135 AALAISGVP 143


>gi|157413740|ref|YP_001484606.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9215]
 gi|187610311|sp|A8G5Y9|PNP_PROM2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157388315|gb|ABV51020.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. MIT 9215]
          Length = 721

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 97/238 (40%), Gaps = 36/238 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66
           REI LT    +  A GS +++ GDT LL TAT   K       +    +  +Y       
Sbjct: 13  REIRLTTGLYAPQASGSVMIECGDTSLLVTATKTTK----KEASDFLPLICDYEEKLYAA 68

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----AD 122
            R  G  ++RE   GR   R+  I R+I R +R +         QI+  C  +     AD
Sbjct: 69  GRIPGGFMRRE---GRPPERATLISRLIDRPMRPLFPTWMRDEIQIVASCLSLDERVPAD 125

Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
                 A+TGA +A                      G +AA+  G++    I++  Y E 
Sbjct: 126 ----VLAVTGASIA-------------TLLGEIPFYGPMAAVRVGLIGDDFILNPSYREI 168

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
              D+D     +  G IV ++  A +   S+      ++   + + +LIK Q+D++ +
Sbjct: 169 EKGDLDIVVAGSPDG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVTELIKSQEDLLKD 223



 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 92/251 (36%), Gaps = 31/251 (12%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R+ GR+ +++R+I+ +  +  K   GS L + G T +L+T TL    P   +       +
Sbjct: 323 RVDGRELDEVRKITASAGILPKRVHGSALFQRGLTQVLSTTTL--GTPSDAQEMDDLNPS 380

Query: 61  AE------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
            E      Y   P S G          R+ G       +  RA+  V+         + +
Sbjct: 381 TEKTYLHHYNFPPYSVGETRPMRTPGRREIGHG----ALAERAIIPVLPGKETFPYVLRV 436

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V+ ++G T   ++ G+ ++L D                 LK  V   + G++     
Sbjct: 437 VSEVLSSNGSTSMGSVCGSTLSLLDAGV-------------PLKAPVGGTAMGLIKEGKD 483

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T+ G I  +Q   +            +  A+     +
Sbjct: 484 VRILTDIQGIEDFLGDMDFKVAGTNKG-ITALQMDMKITGLPVSIISDAIKKARPARLHI 542

Query: 231 IKLQKDVISNE 241
           ++  ++ I   
Sbjct: 543 LEKMQEAIDKP 553


>gi|47213776|emb|CAF92665.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 379

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 93/261 (35%), Gaps = 32/261 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           RL GRQ    R I ++      A+ G C V+ G+T ++   + E   P   R    G + 
Sbjct: 23  RLDGRQTYDYRRIRVSFG----ADYGCCFVELGETRVMAQVSCELVAPKESR-PNEGILF 77

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QI 112
               + P ++         +GRQ   S  + R + R LR    +D  +L    G +  QI
Sbjct: 78  FNIELSPLASPA-----FEAGRQSELSVNLNRQLERCLRNSKCIDTESLCVVSGEKVWQI 132

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL--------SQVLKGHVAAI 164
            +D  ++  DG    AA   A  AL    +       +              L  +   I
Sbjct: 133 RVDVHMLNHDGNLMDAASIAAITALCHFRRPDVGIVGEEIKVFSPEERDPIPLSIYHMPI 192

Query: 165 SCGML----CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           S          Y +VD    E+  +D      M     I  +Q S       ++      
Sbjct: 193 SVSFSFFQQGTYLLVDPCEREERVMDGLLMIAMNKHREICSIQSSG-GIMLLKEQVMRCS 251

Query: 221 NLAKDRIADLIKLQKDVISNE 241
            +A  +++++ +L    + N+
Sbjct: 252 KIASVKVSEITELVSKALEND 272


>gi|330937951|gb|EGH41738.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. pisi str. 1704B]
          Length = 701

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 26/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R++++++  + +    I +  +
Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA +AL D    M             K  VA I+ G++  G     
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAI 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A + 
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 530



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
           ++L    +++ A G+ LV   D   +L T    ++       +  +  +   T   G +P
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR   +     R+I R +R +     +   Q++              
Sbjct: 75  ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
           AA+ G   AL                     G V A           +++  Y +     
Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T    ++     +E    ++D     +  A D    +I   K+
Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 222


>gi|225620025|ref|YP_002721282.1| polynucleotide phosphorylase/polyadenylase [Brachyspira
           hyodysenteriae WA1]
 gi|257096669|sp|C0R0E0|PNP_BRAHW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225214844|gb|ACN83578.1| polynucleotide phosphorylase/polyadenylase [Brachyspira
           hyodysenteriae WA1]
          Length = 712

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 82/245 (33%), Gaps = 20/245 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           MR  GR  +++R I+    +     GS L   G T  L+  TL  +    + +  +G   
Sbjct: 312 MRPDGRALDEIRPITTMTNLIPRVHGSALFTRGQTQCLSIVTLGSEKDAQLMDDIYGKEN 371

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R      +  R+  +V+         I +  
Sbjct: 372 KTFMLHYNFPPFSVGEVGR----YGAPGRREIGHGNLAERSFNAVLPPKDKFPYTIRVVA 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175
           ++++++G +  A I  + ++L      +        +                 GY I+ 
Sbjct: 428 EILESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGL----------ATYKDGYKILT 477

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T  G I   Q   +    S       L  AK     ++    
Sbjct: 478 DIQGVEDHLGDMDFKVAGTRKG-ITAFQLDIKLTGISAQILKEALEQAKKARYFILDKID 536

Query: 236 DVISN 240
             I+N
Sbjct: 537 ATIAN 541



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 84/227 (37%), Gaps = 27/227 (11%)

Query: 16  LTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG--- 71
           L   +  K A GS  ++ G+T +L T  +  K P     +    +T  Y     + G   
Sbjct: 15  LETGLLAKQAHGSVTLRLGNTTILATV-VAAKEPN--LESDFFPLTVNYNEKYYAGGKIP 71

Query: 72  -NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
               KREA   +   +   I R+I R LR +         QII     +  D  T     
Sbjct: 72  GGFFKREA---KPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDMPT----- 123

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
                   D L  +   +          G VAA+  G   G  I++    E ST ++D  
Sbjct: 124 --------DALALIASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELSTSELDI- 174

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            V      I+ ++G A+    S++ F   + LA   +   I +Q ++
Sbjct: 175 IVAGSKDAILMIEGEAKE--VSEEVFIGAIELAHKEMQKYIDMQNEM 219


>gi|313236007|emb|CBY11334.1| unnamed protein product [Oikopleura dioica]
          Length = 271

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 89/247 (36%), Gaps = 22/247 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +++R + L + V+  A+ S +++ G+T ++   T  E +       K G  +
Sbjct: 28  VRPDGRSLDELRPLVLAKNVAPTADSSAMIRLGNTKVICGITA-ETIKPAAATPKDGSFS 86

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG------SRQIII 114
             +      + N     A +G     +Q +   +   L+ V   + L       +  + I
Sbjct: 87  VNFEFSSVCSPN-----AKAGPPNEVAQTMSIFLDGILKQVFQTNQLCIEPDLLAWTLFI 141

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV---------LKGHVAAIS 165
           D   ++ DG    AA+     +L D          +     V         LK    + +
Sbjct: 142 DVYCLEDDGNVTDAAMMSVISSLRDLKLPEITIDEETAKPLVNLEKQSPVDLKMFPVSTT 201

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
            G   G  ++D    E          V ++ G ++    S   +  SQ+   A +  +K 
Sbjct: 202 YGEFSGILLLDPTARETELGSSPITVVCSEKGALLCFNRSG-GSPLSQEQVAAAIENSKR 260

Query: 226 RIADLIK 232
           R + +  
Sbjct: 261 RSSTIYD 267


>gi|302185436|ref|ZP_07262109.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. syringae 642]
          Length = 701

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 26/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R++++++  + +    I +  +
Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA +AL D    M             K  VA I+ G++  G     
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAI 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A + 
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 530



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
           ++L    +++ A G+ LV   D   +L T    ++       +  +  +   T   G +P
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR   +     R+I R +R +     +   Q++              
Sbjct: 75  ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
           AA+ G   AL                     G V A           +++  Y +     
Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T    ++     +E    ++D     +  A D    +I   K+
Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 222


>gi|126730394|ref|ZP_01746205.1| Polyribonucleotide nucleotidyltransferase [Sagittula stellata E-37]
 gi|126709127|gb|EBA08182.1| Polyribonucleotide nucleotidyltransferase [Sagittula stellata E-37]
          Length = 713

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 94/243 (38%), Gaps = 17/243 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR  +Q+R I     +     GS L   G+T  L   TL       +    + T   
Sbjct: 318 RIDGRALDQVRSIVSETGILPRTHGSALFTRGETQALVVTTLGTGDDEQMIDALQGTYKS 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+  +      I +  +
Sbjct: 378 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAATDFPYTIRLVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +++ D    ++       +  VL+      S G+     + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLVLE---EDGSYGI-----LTDI 485

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   + A  + +     L+ AK+    ++      
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMKTALSQAKEGRMHILGEMSKA 544

Query: 238 ISN 240
           IS 
Sbjct: 545 ISE 547



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 80/231 (34%), Gaps = 33/231 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+G+ +   G+T ++   T     +E    +     +       G +P 
Sbjct: 16  LTLETGKVARQADGTVIATLGETSVMANVTFAKTQKEGQDFFPLTVHYQEKYYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++ C V+  D      
Sbjct: 75  --GGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE----D 182
             A+  A  AL                     G +A    G   G  +++    +     
Sbjct: 128 IVAMIAASAALTISGA-------------PFMGPIAGARVGYEDGSYVLNPTVDDMHLLR 174

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
              D   + V+  +   V +  S E    ++D     +  A ++I  +I L
Sbjct: 175 DNPDQRLDLVVAGTKDAVMMVES-EAYELTEDEMLGAVMFAHEQIQPVIDL 224


>gi|332518964|ref|ZP_08395431.1| polyribonucleotide nucleotidyltransferase [Lacinutrix algicola
           5H-3-7-4]
 gi|332044812|gb|EGI81005.1| polyribonucleotide nucleotidyltransferase [Lacinutrix algicola
           5H-3-7-4]
          Length = 750

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 85/245 (34%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +RL GR+ +++R I           GS +   G+T  L T TL    E            
Sbjct: 317 LRLDGRKTDEIRPIWCEVDYLPSTHGSSVFTRGETQALATVTLGTSREANQIDMPSYEGE 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG        S R+ G       +  RAL+ +V         + +  
Sbjct: 377 ERFYLHYNFPPFSTGEARPIRGTSRREVGHG----NLAQRALKGMVPED--CPYTVRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A +    +A+ D    ++   +   +     G ++    G      + D
Sbjct: 431 EILESNGSSSMATVCAGTMAMMDAGVQLKKPVSGIAM-----GLISDADSGKYA--VLSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I   Q   +    S +     L  A+D    ++    +
Sbjct: 484 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKVKGLSYEILVNALKQARDGRLHILDKITE 542

Query: 237 VISNE 241
            I   
Sbjct: 543 TIETP 547



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 74/227 (32%), Gaps = 26/227 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           REIS+      K A GS +V+ G   LL T      +  V        +    A  G  P
Sbjct: 16  REISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQADVDFLPLTVDYREKFAAAGRYP 75

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KREA        +    R++ R LR +         Q++I       D     
Sbjct: 76  ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKDYHSETQVMIQLMSHDDD----- 124

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                    + D +  +   +         +  ++    G + G  I++    +    D+
Sbjct: 125 --------VMPDAMAGLAASAAIQLSDFPFECPISEARVGRVNGEFIINPTRAQLEESDI 176

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D   +   +  ++ V+G  E    S++     +  A + I      Q
Sbjct: 177 DM-MIGASADSVMMVEG--EMDEISEEEMTEAIKFAHEAIKVQCAAQ 220


>gi|197121578|ref|YP_002133529.1| polynucleotide phosphorylase/polyadenylase [Anaeromyxobacter sp. K]
 gi|226702594|sp|B4UHG5|PNP_ANASK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|196171427|gb|ACG72400.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter sp. K]
          Length = 721

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 90/246 (36%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59
           R+ GR    +R+I+    +     GS L   G+T  L   TL             G +  
Sbjct: 324 RIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTLGTAEDEQRVEMLTGMVFK 383

Query: 60  --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G       +  RALR+V+         + +  D
Sbjct: 384 KFMLHYNFPPFSVGEVKFLRSPGRREIGHG----ALAERALRAVMPPEDQFPYTVRVVSD 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           +++++G +  A++ G  ++L D                 +K  VA I+ G++  G     
Sbjct: 440 IMESNGSSSMASVCGGCLSLMDAGV-------------PIKAPVAGIAMGLIKEGEKIAI 486

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    ++D     L  A +    ++  
Sbjct: 487 LSDILGDEDHLGDMDFKVCGTAAG-ITSIQMDIKIGGVTRDILEQALAQAAEGRKHILGE 545

Query: 234 QKDVIS 239
               +S
Sbjct: 546 MAKALS 551



 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 86/238 (36%), Gaps = 32/238 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
           +I L    V+K A GS  V+ GD+ +L TA      +E +  +     +       G +P
Sbjct: 14  DILLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDYQEKLFAAGRVP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G+  +RE   GR   +     R++ R+ R +         Q+I        +  T  
Sbjct: 74  ---GSFFRRE---GRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQENDTDV 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA  ALH                    G +A +    + G  + +         + 
Sbjct: 128 LALTGASAALH-------------ISDIPFGGPIAGVRVARVGGQLVANPTLA--QRAEA 172

Query: 188 DANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ---KDVISNE 241
           D + VM  S   IV V+G A+    S+      L   +  +  L+  Q   +    N+
Sbjct: 173 DLDVVMAASRDAIVMVEGGAQE--VSEAVMIEALLFGQAAVQPLLDAQDALRAATGNK 228


>gi|311030081|ref|ZP_07708171.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. m3-13]
          Length = 715

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 83/234 (35%), Gaps = 26/234 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 325 VRPDGRKSDEIRPLASEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGIEEE 384

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G            G R      +  RAL  V+         + +  
Sbjct: 385 KRFMHHYNFPLFSVGE----TGPMRGPGRREIGHGALGERALDPVIPSEKDFPYTVRLVS 440

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 441 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLIKKGEHYT 487

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED   D+D     T  G +  +Q   +    S+D     L  AK  
Sbjct: 488 VLSDIQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIEGLSRDILEEALQQAKIG 540



 Score = 82.4 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 95/231 (41%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ +V++GDT +L+TAT     +K+  +     +       G +P
Sbjct: 25  RNLTVEVGQLAKQANGAVMVRYGDTAVLSTATASKEPKKLDFFPLTVNYEERLYAVGKIP 84

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q+I     +  +  +  
Sbjct: 85  ---GGFIKRE---GRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEM 138

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G +    +++ +  +    D+
Sbjct: 139 AAMFGSSLALS-------------VSDIPFQGPIAGVTVGRINDEFVINPNVDQLEKSDI 185

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           +     T    I  V+  A+     ++     +    + I  LI  Q++++
Sbjct: 186 NLVVAGTKDA-INMVEAGADEVP--EEVMLEAIMFGHNEIKRLIAFQEEIV 233


>gi|58617084|ref|YP_196283.1| polynucleotide phosphorylase/polyadenylase [Ehrlichia ruminantium
           str. Gardel]
 gi|75357076|sp|Q5FHK5|PNP_EHRRG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|58416696|emb|CAI27809.1| Polyribonucleotide nucleotidyltransferase [Ehrlichia ruminantium
           str. Gardel]
          Length = 789

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 90/245 (36%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  N +R+I +   V     GS L   G+T  L    L           +   +  
Sbjct: 323 RIDGRAFNGIRDIEIEIDVLPKTHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 382

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P + G      A     G R     ++  +A+R V+   +     I +  +
Sbjct: 383 NFLLHYNFPPYAVGE----SAALRAPGRREIGHGKLAWKAIRYVLPEKSDFPYTIRVVSE 438

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + ++DG +  A + GA +AL D                 +K  VA I+ G++  G     
Sbjct: 439 ITESDGSSSMATVCGASLALMDTGV-------------PIKAPVAGIAMGLIKEGEKFII 485

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T SG I  +Q   + +  S +     L  AKD    ++  
Sbjct: 486 LSDILGDEDHLGDMDFKVAGTSSG-ITALQMDMKISGISIEVIEKSLLQAKDGRMHILDK 544

Query: 234 QKDVI 238
              VI
Sbjct: 545 MNLVI 549



 Score = 65.1 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 82/224 (36%), Gaps = 31/224 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
           +++ A G+ +V +G T +L+T      +E V       +    +   G +P   G  +KR
Sbjct: 23  IARQANGAVVVTYGGTTVLSTVVAGKAKEPVDFLPLTVQFVAKSYAVGKIP---GGFLKR 79

Query: 77  EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--RTAAITGAW 134
           E   G+   R   I R+I R++R +          I+  C+++  D  T     A+ GA 
Sbjct: 80  E---GKPSDRETLISRLIDRSIRPLFPSGFYDEVSIV--CNLLSYDTVTPPEVTALIGAT 134

Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGYPIVDLDYGEDSTIDVDANFV 192
            AL                     G V     G L      +++    E         F+
Sbjct: 135 AALA-------------ISGVPFNGMVVGARVGYLLSEDKYLLNASADE-MLSSSLDLFL 180

Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             +   ++ V+  A   +  +    A ++       ++IKL ++
Sbjct: 181 SGNKDSVLMVESEASELS--ESQMLAAISFGHQNCQEVIKLIEE 222


>gi|237798567|ref|ZP_04587028.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331021420|gb|EGI01477.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 701

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 18/229 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R++++++  + +    I +  +
Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    M+       +  V +G   AI         + D+
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAI---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
              ED   D+D     T  G +  +Q   +    +++     L  A + 
Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 530



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 71/230 (30%), Gaps = 29/230 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
           + L    +++ A G+ LV   D   +L T    +        +  +  +   T   G +P
Sbjct: 15  VILETGRIARQASGAVLVTVDDDVSVLVTVVGAKHADAGKGFFPLSVHYQEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR   +     R+I R +R +     +   Q++              
Sbjct: 75  ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
           AA+ G   AL                     G V A           +++  Y +     
Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T    ++     +E    ++D     +  A D    +I   K+
Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 222


>gi|220916341|ref|YP_002491645.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|254782701|sp|B8JFZ1|PNP_ANAD2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219954195|gb|ACL64579.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 721

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 90/246 (36%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59
           R+ GR    +R+I+    +     GS L   G+T  L   TL             G +  
Sbjct: 324 RIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTLGTAEDEQRVEMLTGMVFK 383

Query: 60  --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G       +  RALR+V+         + +  D
Sbjct: 384 KFMLHYNFPPFSVGEVKFLRSPGRREIGHG----ALAERALRAVMPPEDQFPYTVRVVSD 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           +++++G +  A++ G  ++L D                 +K  VA I+ G++  G     
Sbjct: 440 IMESNGSSSMASVCGGCLSLMDAGV-------------PIKAPVAGIAMGLIKEGEKIAI 486

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    ++D     L  A +    ++  
Sbjct: 487 LSDILGDEDHLGDMDFKVCGTAAG-ITSIQMDIKIGGVTRDILEQALAQAAEGRKHILGE 545

Query: 234 QKDVIS 239
               +S
Sbjct: 546 MAKALS 551



 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 86/238 (36%), Gaps = 32/238 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
           +I L    V+K A GS  V+ GD+ +L TA      +E +  +     +       G +P
Sbjct: 14  DILLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDYQEKLFAAGRVP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G+  +RE   GR   +     R++ R+ R +         Q+I        +  T  
Sbjct: 74  ---GSFFRRE---GRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQENDTDV 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA  ALH                    G +A +    + G  + +         + 
Sbjct: 128 LALTGASAALH-------------ISDIPFGGPIAGVRVARVGGQLVANPTLA--QRAEA 172

Query: 188 DANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ---KDVISNE 241
           D + VM  S   IV V+G A+    S+      L   +  +  L+  Q   +    N+
Sbjct: 173 DLDVVMAASRDAIVMVEGGAQE--VSEAVMIEALLFGQAAVQPLLDAQDALRAATGNK 228


>gi|93004911|ref|YP_579348.1| polynucleotide phosphorylase/polyadenylase [Psychrobacter
           cryohalolentis K5]
 gi|123264798|sp|Q1QEN9|PNP_PSYCK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|92392589|gb|ABE73864.1| Polyribonucleotide nucleotidyltransferase [Psychrobacter
           cryohalolentis K5]
          Length = 700

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 92/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R + +   V  +  GS L   G+T  L T TL     + + ++  G I  
Sbjct: 320 RIDGRDLETVRALDVQVGVLPFTHGSALFTRGETQALVTTTLGNTRDVNMIDSLAGTIRD 379

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +      R+ G      R+  R +++++  S      I +  +
Sbjct: 380 HFMLHYNFPHFSVGETGREGIPKRREIGHG----RLARRGVQAMLPDSDRFPYVIRVVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++  G     
Sbjct: 436 ITESNGSSSMASVCGASLALMDAGV-------------PIKAPVAGIAMGLVKEGERFAV 482

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    + D     L  A      ++  
Sbjct: 483 LSDILGDEDHLGDMDFKVAGSKDG-ITALQMDIKIEGITPDIMEQALKQAHAGRIHILDA 541

Query: 234 QKDVI 238
              V+
Sbjct: 542 MNKVL 546



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 65/217 (29%), Gaps = 26/217 (11%)

Query: 13  EISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++ +          S LV  G   +L  A ++    E    +     +       G +P 
Sbjct: 17  QVVIETGRIARQANSILVHMGGVTVLVAAVVKSDAKEGQNFFPLTVNYQEKMYAAGKIPG 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
           + G R       GR         R+I R +R +     +   QI               A
Sbjct: 77  AYGKR------EGRASESETLTSRLIDRPIRPLFPEGYVNEIQITATVVSSDKTQSADIA 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G VAA   G + G  +++    E    D+D
Sbjct: 131 ALIGASAALA-------------ISDAPFNGPVAAARVGFINGEYVLNPTLEELKESDLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                T S  ++     +E A  S+D     +     
Sbjct: 178 LVVAGTKSAVLMV---ESEAAELSEDQMLGAVLYGHQ 211


>gi|85714171|ref|ZP_01045160.1| polyribonucleotide nucleotidyltransferase [Nitrobacter sp. Nb-311A]
 gi|85699297|gb|EAQ37165.1| polyribonucleotide nucleotidyltransferase [Nitrobacter sp. Nb-311A]
          Length = 723

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 92/243 (37%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     V   A GS L   G+T  +   TL         ++  G    
Sbjct: 321 RIDGRDVKTVRAIVAEVGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDSLSGTYKE 380

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      ++  RA+  V+         I +  +
Sbjct: 381 TFLLHYNFPPYSVGETGRLGGTKRREIGHG----KLAWRAIHPVLPPHHEFPYTIRVVSE 436

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G+ +AL D    ++  +    +  +L+G   A+         + D+
Sbjct: 437 ITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRYAV---------LSDI 487

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+SG I  +Q   + A  +++     L  AKD    ++      
Sbjct: 488 LGDEDHLGDMDFKVAGTESG-ITSLQMDIKIAGITEEIMKVALAQAKDGRIHILGEMAKA 546

Query: 238 ISN 240
           ++N
Sbjct: 547 LTN 549



 Score = 88.2 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 85/254 (33%), Gaps = 45/254 (17%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ +  +G+T +L T     T  E V        +   T   G +
Sbjct: 19  RPLKLETGKIARQADGAVIASYGETVVLATVVAAKTPREGVDFLPLTVDYQEKTYAAGRI 78

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +   + R+I R +R +         Q+I+       +    
Sbjct: 79  P---GGYFKRE---GRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMENDPD 132

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                    KG + A   G +    +++    E   +D
Sbjct: 133 VLAMVAASAAL-------------TLSGVPFKGPIGAARVGFMNDEYVLNPTLDE--MVD 177

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHF---------------FAMLNLAKDRIA--- 228
                V+  +   V +  S E    S+D                  A++ LA+       
Sbjct: 178 TRLELVVAGTADAVLMVES-EAKELSEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPR 236

Query: 229 DLIKLQKDVISNEV 242
           ++  +    +  E+
Sbjct: 237 EVAAIDNSALEKEM 250


>gi|330958045|gb|EGH58305.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 701

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 18/229 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R++++++  + +    I +  +
Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    M+       +  V +G   AI         + D+
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAI---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
              ED   D+D     T  G +  +Q   +    +++     L  A + 
Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 530



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
           ++L    +++ A G+ LV   D   +L T    ++       +  +  +   T   G +P
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR   +     R+I R +R +     +   Q++              
Sbjct: 75  ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
           AA+ G   AL                     G V A           +++  Y +     
Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T    ++     +E    ++D     +  A D    +I   K+
Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 222


>gi|320322524|gb|EFW78617.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320330007|gb|EFW85994.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330875199|gb|EGH09348.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 701

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 18/229 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R++++++  + +    I +  +
Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    M+       +  V +G   AI         + D+
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAI---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
              ED   D+D     T  G +  +Q   +    +++     L  A + 
Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 530



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
           ++L    +++ A G+ LV   D   +L T    ++       +  +  +   T   G +P
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR   +     R+I R +R +     +   Q++              
Sbjct: 75  ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
           AA+ G   AL                     G V A           +++  Y +     
Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T    ++     +E    ++D     +  A D    +I   K+
Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 222


>gi|168180709|ref|ZP_02615373.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
           NCTC 2916]
 gi|226949765|ref|YP_002804856.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum
           A2 str. Kyoto]
 gi|254782713|sp|C1FS53|PNP_CLOBJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|182668424|gb|EDT80403.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
           NCTC 2916]
 gi|226842894|gb|ACO85560.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A2
           str. Kyoto]
          Length = 702

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 86/244 (35%), Gaps = 16/244 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           R  GR  +++R IS    +     G+ L   G T ++T AT     + ++   I      
Sbjct: 312 RPDGRSFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIAEEASK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  RAL  ++         I +  +
Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSEEEFPYTIRLVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A++ G+ +AL D    ++  +    +  +    +            I D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSDDLE-------KEKVITDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   + A  S +     L  AK     ++   K+ 
Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITSIQFDTKIAGLSDNCVRDALEGAKKARLHILGKIKEC 539

Query: 238 ISNE 241
           I   
Sbjct: 540 IPEP 543



 Score = 82.1 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 86/236 (36%), Gaps = 31/236 (13%)

Query: 12  REISL---TRRVSKYAEGSCLVKFGDTHLL--TTAT--LEEKVPMWIRNTKHGWITAEYG 64
           R++ +      +   A     + +GDT ++    A+    E +  +  +  +       G
Sbjct: 12  RKMKVDFGKTGMLSNAA--IFMSYGDTVVMINANASKAPREGIDFFPLSVDYEERLYSVG 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G  +KRE   G+   +S    R I R LR +         QI+     ++ D  
Sbjct: 70  KIP---GGFIKRE---GKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQDNL 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               AI G+ +AL                S      VAA+S G++ G  I++    +   
Sbjct: 124 PEILAINGSSLALC-------------LSSIPFTTPVAAVSVGLVDGEFIINPTVAQREN 170

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             +D     T    ++ V+   +     ++  ++ +        +++  Q++ ++ 
Sbjct: 171 TILDLTVCATKE-RVMMVEAGGQE--IDEETMYSAIMFGFQECKNIVAFQEEAVAK 223


>gi|89889343|ref|ZP_01200854.1| polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium
           BBFL7]
 gi|89517616|gb|EAS20272.1| polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium
           BBFL7]
          Length = 748

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 87/243 (35%), Gaps = 20/243 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKH 56
           +RL GR+   +R+I           GS +   G+T  L T TL       V         
Sbjct: 317 IRLDGRKTTDIRDIWCEVDYLPSTHGSAIFSRGETQALATVTLGTSRDANVIDMASQEGE 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG        S R+ G       +  RAL++++         + +  
Sbjct: 377 ERFYLHYNFPPFSTGEARPLRGTSRREIGHG----NLAQRALKNMLPEDL--PYTVRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G +  A +    +A+ D    M+   +   +  +  G   A+         + D
Sbjct: 431 EVLESNGSSSMATVCAGTMAMMDAGLPMKKPVSGIAMGLITDGDKYAV---------LSD 481

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T+ G I   Q   +    S +     L  A+D    ++    D
Sbjct: 482 ILGDEDHLGDMDFKVTGTEDG-ITACQMDIKVKGLSYEILTNALMQARDGRMHILGKLTD 540

Query: 237 VIS 239
            I+
Sbjct: 541 TIA 543



 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 80/234 (34%), Gaps = 27/234 (11%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           +I++      K A GS ++  G   LL T         +        +    A  G  P 
Sbjct: 17  DITIETGALAKQAHGSVVITCGKAMLLGTVVSSYKSTGLDFLPLTVDYREKFAAAGKYP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KREA   R         R++ R LR +         Q++I   ++  D      
Sbjct: 76  --GGFFKREA---RPNDGEVLTMRLVDRVLRPLFPKDYHAEVQVMI--QLMSHD------ 122

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
                   + D +  +   +         +  ++ +    + G  +++  Y +    D++
Sbjct: 123 -----PEVMPDAMAGLAASAAIQLSDLPFECAISEVRVARVDGEFVINPSYAQLEAADLE 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
              +   +  ++ V+G  E  +  ++   A +  A + I D    Q   ++ +V
Sbjct: 178 M-MIGASADSVMMVEGEMEEIS--EEEMIAAIKAAHEAIKDQCAAQ-IALAEQV 227


>gi|66047403|ref|YP_237244.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. syringae B728a]
 gi|75500706|sp|Q4ZNR6|PNP_PSEU2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|63258110|gb|AAY39206.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 701

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 18/229 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R++++++  + +    I +  +
Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    M+       +  V +G   AI         + D+
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAI---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
              ED   D+D     T  G +  +Q   +    +++     L  A + 
Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 530



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
           ++L    +++ A G+ LV   D   +L T    ++       +  +  +   T   G +P
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR   +     R+I R +R +     +   Q++              
Sbjct: 75  ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
           AA+ G   AL                     G V A           +++  Y +     
Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T    ++     +E    ++D     +  A D    +I   K+
Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 222


>gi|87119787|ref|ZP_01075684.1| polyribonucleotide nucleotidyltransferase [Marinomonas sp. MED121]
 gi|86165263|gb|EAQ66531.1| polyribonucleotide nucleotidyltransferase [Marinomonas sp. MED121]
          Length = 702

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 93/246 (37%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57
           R+ GR    +R I +   +     GS L   G+T  + T TL       +          
Sbjct: 315 RIDGRDNKTVRPIEVEVGLLSKTHGSSLFTRGETQAIATCTLGTSRDAQMSDGLAGENKD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     R+  R +++V+         I I  +
Sbjct: 375 SFMLHYNFPPYSVGECGR----MGGVGRREIGHGRLARRGVQAVLPSEEEFPYTIRIVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +++ D                 LK  VA I+ G++    G+ +
Sbjct: 431 ITESNGSSSMASVCGASLSMMDAGV-------------PLKAPVAGIAMGLVKEDDGFAV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   +    +++     L+ A +    +++ 
Sbjct: 478 LTDILGDEDHLGDMDFKVAGTEEG-ITALQMDIKIEGINEEIMDIALSQALEARTHILRE 536

Query: 234 QKDVIS 239
              VI 
Sbjct: 537 MSKVIG 542



 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 72/230 (31%), Gaps = 34/230 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A GS L   GD  +L T       +     +  +  +       G +P 
Sbjct: 15  VTLETGRVARQATGSVLCTIGDVQVLATVVGAKSAQAGQSFFPLSVHYQERAYAVGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR   +     R+I R +R +     +   Q++I       D     A
Sbjct: 74  --GGFLKRE---GRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVITVMSTNTDTDADIA 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187
            +     AL                     G + A   G       +++  Y E     +
Sbjct: 129 GMLATSAALSVSGI-------------PFNGPIGAARVGFNDDDGYVLNPSYSELDGSLL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           D     T    ++     +E    ++D     +  A        +LQ  V
Sbjct: 176 DMVVAGTKDAVLMV---ESEAQELTEDEMLGAVLFAHK------ELQAAV 216


>gi|298488460|ref|ZP_07006491.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298157085|gb|EFH98174.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 701

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 18/229 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R++++++  + +    I +  +
Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    M+       +  V +G   AI         + D+
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAI---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
              ED   D+D     T  G +  +Q   +    +++     L  A + 
Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 530



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
           ++L    +++ A G+ LV   D   +L T    ++       +  +  +   T   G +P
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR   +     R+I R +R +     +   Q++              
Sbjct: 75  ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
           AA+ G   AL                     G V A           +++  Y +     
Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T    ++     +E    ++D     +  A D    +I   K+
Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 222


>gi|91974709|ref|YP_567368.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
           palustris BisB5]
 gi|123749482|sp|Q13EM2|PNP_RHOPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|91681165|gb|ABE37467.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris BisB5]
          Length = 722

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 91/241 (37%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I     V   A GS L   G+T  L   TL         ++  G    
Sbjct: 316 RIDGRDSKTVRSIIAEAGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYVDSLAGTYKE 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      ++  RA+R V+         I +  +
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHG----KLAWRAIRPVLPPHHEFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    ++  +    +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G +  +Q   + A  +++     L  AKD    ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTEQG-VTSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSKA 541

Query: 238 I 238
           +
Sbjct: 542 L 542



 Score = 86.7 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 82/236 (34%), Gaps = 38/236 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + L    V++ A+G+ +  +G+T +L T     T  E V        +   T   G +
Sbjct: 14  RPLRLETGKVARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLTVDYQEKTYAAGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +   + R+I R +R +         Q+I+       +    
Sbjct: 74  P---GGYFKRE---GRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  +  AL                    KG + A   G +    +++    E     
Sbjct: 128 ILALVASSAALTLSGA-------------PFKGPIGAARVGFINDEYVLNPVLDEMPETQ 174

Query: 187 VDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLN----LAKDRIAD 229
           +D     T S  ++ V+  A+  +         F   HF  +++    LA+    +
Sbjct: 175 LDLVVAGT-SDAVLMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIALAEKAAKE 229


>gi|39938737|ref|NP_950503.1| polynucleotide phosphorylase/polyadenylase [Onion yellows
           phytoplasma OY-M]
 gi|81402500|sp|Q6YQX2|PNP_ONYPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|39721846|dbj|BAD04336.1| polyribonucleotide nucleotidyltransferase [Onion yellows
           phytoplasma OY-M]
          Length = 715

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 87/251 (34%), Gaps = 28/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R   R   ++R +     +   A GS L   G T  L   TL    E K+   + + ++
Sbjct: 324 IRPDKRGLEEIRTLESQIDLLPRAHGSALFTRGQTQSLAAVTLGCLSESKIIDGLSDEQN 383

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  A S R+ G       +  +A+  V+         I +  
Sbjct: 384 KRFMLHYNFPPFSVGAVGRYTAPSRREIGHGT----LAEKAISQVLPEEKDFPYTIRVVS 439

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
           ++++++G +  A +  + +AL                   LK  VA +S G++       
Sbjct: 440 EILESNGSSSQATVCASSLAL-------------MASGVPLKKAVAGMSVGLVFDQATNK 486

Query: 174 ---IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T+ G I  +Q   +               AK     +
Sbjct: 487 YVILSDIQGLEDHVGDMDLKIAGTNKG-ITALQMDLKIQGIHFKILQEAFLQAKKGRLHI 545

Query: 231 IKLQKDVISNE 241
           ++     IS  
Sbjct: 546 LEHMSQTISQP 556



 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 71/219 (32%), Gaps = 27/219 (12%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
            ++  + S LV++ DT +LTT     K      N     +T  Y     + G   K    
Sbjct: 22  YARNVDASILVRYQDTVVLTTTVFSRK----PNNLDFLPLTVIYQEKLYAAG---KIPGS 74

Query: 80  SGRQGGRS--QEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
             R+ GRS   EI   R+I R+LR +         Q+I     +  D             
Sbjct: 75  FLRREGRSNDHEILTSRLIDRSLRPLFPDYFQQEVQVINTVLSLDPD------------- 121

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
              +    +    +           ++ +  G +    I++    + +   +      T 
Sbjct: 122 FKSELASMLGSSLSLLISEIPFFEAISGVYVGKINDKFIINPTLQQLANSTLHLMVAGTK 181

Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
             ++  ++  A     S+  F   +N A   I  L   Q
Sbjct: 182 H-NVTMIE--AHANEVSEQDFLEAINFAHQYIKKLCLFQ 217


>gi|322806678|emb|CBZ04247.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
           H04402 065]
          Length = 702

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 86/244 (35%), Gaps = 16/244 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           R  GR  +++R IS    +     G+ L   G T ++T AT     + ++   I   +  
Sbjct: 312 RPDGRAFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIAEEESK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  RAL  ++   +     I +  +
Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSESEFPYTIRLVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A++ G+ +AL D    ++  +    +  +    +            I D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLE-------KEKVITDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   +    S       L  AK     ++   K+ 
Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIKEC 539

Query: 238 ISNE 241
           I   
Sbjct: 540 IPEP 543



 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 87/236 (36%), Gaps = 31/236 (13%)

Query: 12  REISL---TRRVSKYAEGSCLVKFGDTHLL--TTAT--LEEKVPMWIRNTKHGWITAEYG 64
           R++ +      +   A     + +GDT ++    A+    E +  +  + ++       G
Sbjct: 12  RKMKVDFGKTGMLSNAA--IFMSYGDTVVMINANASKEPREGIDFFPLSVEYEERLYSVG 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G  +KRE   G+   +S    R I R LR +         QI+     ++ D  
Sbjct: 70  KIP---GGFIKRE---GKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQDNL 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               AI G+ +AL                S      VAA+S G++ G  I++    +   
Sbjct: 124 PEILAINGSSLALC-------------LSSIPFTTPVAAVSVGLVDGEFIINPTVAQREN 170

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             +D     T    ++ V+   +     ++  ++ +    +   ++   Q++ ++ 
Sbjct: 171 TILDLTVCATKE-RVMMVEAGGQE--IDEETMYSAIMFGFEECKNIAAFQEEAVAK 223


>gi|269467861|gb|EEZ79604.1| Polyribonucleotide nucleotidyltransferase [uncultured SUP05 cluster
           bacterium]
          Length = 697

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 86/235 (36%), Gaps = 28/235 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
           R+ GR    +RE+ +   V +   GS L   G+T  L   TL  K    +         K
Sbjct: 317 RIDGRDNETVRELKIETGVLENTHGSALFTRGETQALVVTTLGSKRDAQLIEKLESSERK 376

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           + +    Y   P   G   +      R+ G      R+  R + + +         I + 
Sbjct: 377 NDYFLLHYNFPPYCVGETGRVGTTKRREIGHG----RLARRGISACLPTIEEYPYTIRVV 432

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            ++ +++G +  A++ G+ ++L D    M             K  VA I+ G++      
Sbjct: 433 SEITESNGSSSMASVCGSSLSLMDAGVPM-------------KAPVAGIAMGLVKEGDRF 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             + D+   ED   D+D     T  G +  +Q   +    +Q+     L  AK+ 
Sbjct: 480 TVLTDILGDEDHLGDMDFKVAGTSRG-VNALQMDIKIQGITQEIMDIALKQAKEA 533



 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 78/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           I+L    +++ A G+ L    DT +L T             +  +  +   T   G +P 
Sbjct: 17  ITLETGRIARQAHGAVLASMDDTQVLVTVVGSKEMRPGQDFFPLSVDYIEKTYAAGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KREA   R   +     R+I R +R +     +   Q++I       +      
Sbjct: 76  --GGFLKREA---RPSEKETLTSRLIDRPIRPLFPAGFMNEVQVLITVISANKEVDPDMI 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G   AL                     G +     G      I++  Y E +  D+D
Sbjct: 131 AMLGVSAALS-------------ISGVPFSGPIGGARVGFKNDEFILNPTYSELADSDLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKDV 237
                TD   ++     +E    S++     +  A D     I ++ +   +V
Sbjct: 178 MVVAGTDEAVLMV---ESEANELSEEIMLKAVMCAHDEYQVAIKNIAEFVAEV 227


>gi|170759417|ref|YP_001787723.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum
           A3 str. Loch Maree]
 gi|226702640|sp|B1KWK1|PNP_CLOBM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169406406|gb|ACA54817.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A3
           str. Loch Maree]
          Length = 702

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 86/244 (35%), Gaps = 16/244 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           R  GR  +++R IS    +     G+ L   G T ++T AT     + ++   I   +  
Sbjct: 312 RPDGRAFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIAEEESK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  RAL  ++   +     I +  +
Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSESEFPYTIRLVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A++ G+ +AL D    ++  +    +  +    +            I D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLE-------KEKVITDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   +    S       L  AK     ++   K+ 
Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIKEC 539

Query: 238 ISNE 241
           I   
Sbjct: 540 IPEP 543



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 88/236 (37%), Gaps = 31/236 (13%)

Query: 12  REISL---TRRVSKYAEGSCLVKFGDTHLL--TTAT--LEEKVPMWIRNTKHGWITAEYG 64
           R++ +      +   A     + +GDT ++    A+    E +  +  + ++       G
Sbjct: 12  RKMKVDFGKTGMLSNAA--IFMSYGDTVVMINANASKEPREGIDFFPLSVEYEERLYSVG 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G  +KRE   G+   +S    R I R LR +         QI+     ++ D  
Sbjct: 70  KIP---GGFIKRE---GKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQDNL 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               AI G+ +AL                S      VAA+S G++ G  I++    +   
Sbjct: 124 PEILAINGSSLALC-------------LSSIPFTTPVAAVSVGLVDGEFIINPTVAQREN 170

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             +D     T    ++ V+   +     ++  ++ +    +   +++  Q++ ++ 
Sbjct: 171 TILDLTVCATKE-RVMMVEAGGQE--IDEETMYSAIMFGFEECKNIVAFQEEAVAK 223


>gi|238021429|ref|ZP_04601855.1| hypothetical protein GCWU000324_01329 [Kingella oralis ATCC 51147]
 gi|237868409|gb|EEP69415.1| hypothetical protein GCWU000324_01329 [Kingella oralis ATCC 51147]
          Length = 716

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 95/244 (38%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      +  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPDPEDFNYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+ +  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   +  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILSQMQAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 87/238 (36%), Gaps = 36/238 (15%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAGAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI---IIDCDV-IQADGG 124
             G   KRE   G+Q  +     R+I R +R +         QI   +I CD  I +D  
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVISCDPEIDSD-- 127

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+ GA  AL                     G + A   G   G  +++    E +T
Sbjct: 128 --IPAMIGASAALV-------------LSGVPFAGPIGAARVGYANGQYLLNPSKTELAT 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
             +D     T    ++     +E     +D     +    +++  +I    + +++EV
Sbjct: 173 SQLDLVVAGTKQAVLMV---ESEANILPEDVMLGAVVFGHEQMQAVINAINE-LADEV 226


>gi|330969656|gb|EGH69722.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aceris str. M302273PT]
          Length = 701

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 18/229 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R++++++  + +    I +  +
Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    M+       +  V +G   AI         + D+
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAI---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
              ED   D+D     T  G +  +Q   +    +++     L  A + 
Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 530



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
           ++L    +++ A G+ LV   D   +L T    ++       +  +  +   T   G +P
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR   +     R+I R +R +     +   Q++              
Sbjct: 75  ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
           AA+ G   AL                     G V A           +++  Y +     
Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T    ++     +E    ++D     +  A D    +I   K+
Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 222


>gi|78212120|ref|YP_380899.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           CC9605]
 gi|123578701|sp|Q3AM38|PNP_SYNSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78196579|gb|ABB34344.1| RNA binding S1 [Synechococcus sp. CC9605]
          Length = 721

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 95/237 (40%), Gaps = 34/237 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           REI LT    +  A GS LV+ GDT +L TAT     E +        +       G +P
Sbjct: 13  REIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSGGREGIDFLPLICDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----ADG 123
              G+ ++RE+   R   R+    R+I R +R +         Q++  C  +     AD 
Sbjct: 73  ---GSYMRRES---RPPERATLTARLIDRPMRPLFPSWLRDDLQVVATCLSLDERVPAD- 125

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
                A+TGA +A                      G +AA+  G+L    +++  Y E  
Sbjct: 126 ---VLAVTGASIATLLAGI-------------PFNGPMAAVRVGLLGDDFVLNPSYREIE 169

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             D+D     T  G +V V+  A +    +      ++   + I +LIK Q+ ++ +
Sbjct: 170 RGDLDLVVAGTPDG-VVMVEAGANQ--LPEQDVIEAIDFGYEAICELIKAQEQLLKD 223



 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 95/247 (38%), Gaps = 29/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-----NTK 55
           R+ GR  +++R+IS    V  +   GS L + G T +L+TATL              NT+
Sbjct: 323 RVDGRGLDEVRQISAMAGVLPRRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLHPNTE 382

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P S G      +   R+ G       +  RA+  V+         + + 
Sbjct: 383 KLYLH-HYNFPPYSVGETRPMRSPGRREIGHG----ALAERAILPVLPEKDTFPYVVRVV 437

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V+ ++G T   ++ G+ ++L D                 LK  V+  + G++      
Sbjct: 438 SEVLSSNGSTSMGSVCGSTLSLMDAGV-------------PLKAPVSGAAMGLIKEGDEV 484

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     ++ G I  +Q   +    S       +N A+     ++
Sbjct: 485 RILTDIQGIEDFLGDMDFKVAGSEKG-ITALQMDMKITGLSVKTVAEAVNQARPARLHIL 543

Query: 232 KLQKDVI 238
           +   + I
Sbjct: 544 EKMLEAI 550


>gi|71734516|ref|YP_276307.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|257482257|ref|ZP_05636298.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|289627537|ref|ZP_06460491.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289646965|ref|ZP_06478308.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|123747552|sp|Q48E81|PNP_PSE14 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|71555069|gb|AAZ34280.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|330868250|gb|EGH02959.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330888654|gb|EGH21315.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. mori str. 301020]
 gi|330987059|gb|EGH85162.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. lachrymans str. M301315]
 gi|331011503|gb|EGH91559.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 701

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 18/229 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R++++++  + +    I +  +
Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    M+       +  V +G   AI         + D+
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAI---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
              ED   D+D     T  G +  +Q   +    +++     L  A + 
Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 530



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
           ++L    +++ A G+ LV   D   +L T    ++       +  +  +   T   G +P
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR   +     R+I R +R +     +   Q++              
Sbjct: 75  ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
           AA+ G   AL                     G V A           +++  Y +     
Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T    ++     +E    ++D     +  A D    +I   K+
Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 222


>gi|73662800|ref|YP_301581.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|117940130|sp|Q49X62|PNP_STAS1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|72495315|dbj|BAE18636.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 697

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 87/231 (37%), Gaps = 20/231 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +R  GR+ +++R +     V   A GS L   G T  L+  TL       I +     + 
Sbjct: 318 IRPDGRKTDEIRPLESEVGVLPRAHGSGLFTRGQTQALSVLTLGSMSEYQILDGLGEEEQ 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIID 115
                 Y     S G      +   R+ G       +  RAL  ++ DL       + I 
Sbjct: 378 KRFMHHYNFPNYSVGETGPVRSPGRREIGHG----ALGERALSHIIPDLKDFP-YTVRIV 432

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            +V++++G +  A+I G+ +AL D    ++       +  V +     I         + 
Sbjct: 433 SEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTI---------LT 483

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           D+   ED+  D+D     T  G I  +Q   +    +++     L+ A++ 
Sbjct: 484 DIQGMEDALGDMDFKVAGTAEG-ITAIQMDIKIDGLTKEIIKEALDQAREG 533



 Score = 85.5 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 86/232 (37%), Gaps = 28/232 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ LV++GDT +L+TA           +     +       G +P
Sbjct: 15  RSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDGDFFPLMVNYEEKMYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R +         QI+        D     
Sbjct: 75  ---GGFKKRE---GRPSDEATLTARLIDRPIRPLFPKGYKYDVQIMNTVLSADPDCSPEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A +  G + G  +++    +     +
Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVKVGYIDGEYVINPTVAQKEVSRL 175

Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D       D+ ++VE    A  +  ++      +      I  L+  Q++++
Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITESEMLEAIFFGHSEIQRLVNFQQEIV 223


>gi|262375116|ref|ZP_06068350.1| polyribonucleotide nucleotidyltransferase [Acinetobacter lwoffii
           SH145]
 gi|262310129|gb|EEY91258.1| polyribonucleotide nucleotidyltransferase [Acinetobacter lwoffii
           SH145]
          Length = 697

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 94/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L T TL       +      TK  
Sbjct: 317 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +      R+ G      R+  R +++V+  +      I I  D
Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA ++L D                 LK  VA I+ G++  G     
Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G I  +Q   +    +++   + LN A      ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMESALNQAYAGRMHILNE 538

Query: 234 QKDVIS 239
              VIS
Sbjct: 539 MNQVIS 544



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 62/199 (31%), Gaps = 34/199 (17%)

Query: 48  PMWIRNTKHGWITAEYGMLPRSTG----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVD 103
           P          +T  Y     + G       KRE   GRQ      I R+I R +R +  
Sbjct: 49  PKAKAGQDFFPLTVNYQEKQYAAGRIPGGYGKRE---GRQSEAETLISRLIDRPIRPLFP 105

Query: 104 LSALGSRQIIIDCDVIQADG--GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV 161
                   I +   VI +D       AA+ G   AL                    +G +
Sbjct: 106 EGYFNE--IQVTATVISSDKTMDADIAAMLGTSAALSIAGT-------------PFRGPI 150

Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM-- 219
                G++ G  I++ +  +    D+D     T++  ++     +E    S+D       
Sbjct: 151 GGARVGLINGEYILNPNLEQLKESDLDLVVAGTETAVLMV---ESEAKELSEDQMLGAVL 207

Query: 220 -----LNLAKDRIADLIKL 233
                + +A   I +    
Sbjct: 208 FGHDEMQIAIQAIKEFAAA 226


>gi|124022312|ref|YP_001016619.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9303]
 gi|187610312|sp|A2C794|PNP_PROM3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123962598|gb|ABM77354.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. MIT 9303]
          Length = 721

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 97/237 (40%), Gaps = 34/237 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           REI LT    +  A GS +++ GDT +L TAT     E +        +       G +P
Sbjct: 13  REIRLTTGRYAPQAGGSVMMECGDTSVLVTATRSTGREGIDFLPLICDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----ADG 123
              G+ ++RE   GR   R+  I R+I R +R +         QI+  C  +     AD 
Sbjct: 73  ---GSFMRRE---GRPPERATLIARLIDRPMRPLFPSWMRDDLQIVATCLSLDERVPAD- 125

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
                A+TGA +A                     +G +AA+  G+L    +++  Y E  
Sbjct: 126 ---VLAVTGASMATLLAGI-------------PFQGPMAAVRVGLLGDDFVLNPSYREIE 169

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             D+D     T  G +V V+  A +    +      ++   + + +LIK Q+ ++ +
Sbjct: 170 RGDLDLVVAGTPDG-VVMVEAGANQ--LPEGDVIEAIDFGYEAVCELIKAQQSILKD 223



 Score = 95.5 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 91/247 (36%), Gaps = 29/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-----NTK 55
           R+ GR+ +++R I+    V  K   GS L + G T +L+TATL                +
Sbjct: 323 RVDGRKLDEVRTITSAAGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPGPE 382

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P S G      +   R+ G       +  RA+  V+         + + 
Sbjct: 383 KTYLH-HYNFPPYSVGETRPMRSPGRREVGHGS----LAERAIIPVLPPKDTFPYVLRVV 437

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V+ ++G T   ++ G+ +AL D                 LK  V+  + G++      
Sbjct: 438 SEVLSSNGSTSMGSVCGSTLALMDAGV-------------PLKAPVSGAAMGLIKEDAEI 484

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I  +Q   +            +N A+     ++
Sbjct: 485 RILTDIQGIEDFLGDMDFKVAGTKDG-ITALQMDMKITGLPVKTIAEAVNQARPARIHIL 543

Query: 232 KLQKDVI 238
           +   + I
Sbjct: 544 EKMLEAI 550


>gi|28871621|ref|NP_794240.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213966643|ref|ZP_03394794.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
           tomato T1]
 gi|301383153|ref|ZP_07231571.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. tomato Max13]
 gi|302061771|ref|ZP_07253312.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. tomato K40]
 gi|302133785|ref|ZP_07259775.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|81729685|sp|Q87WQ8|PNP_PSESM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|28854873|gb|AAO57935.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213928493|gb|EEB62037.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
           tomato T1]
 gi|330963979|gb|EGH64239.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. actinidiae str. M302091]
 gi|331016652|gb|EGH96708.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 701

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 18/229 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R++++++  + +    I +  +
Sbjct: 376 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    M+       +  V +G   AI         + D+
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAI---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
              ED   D+D     T  G +  +Q   +    +++     L  A + 
Sbjct: 483 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 530



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
           ++L    +++ A G+ LV   D   +L T    ++       +  +  +   T   G +P
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR   +     R+I R +R +     +   Q++              
Sbjct: 75  ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
           AA+ G   AL                     G V A           +++  Y +     
Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T    ++     +E    ++D     +  A D    +I   K+
Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 222


>gi|291408704|ref|XP_002720651.1| PREDICTED: exosome component 8 [Oryctolagus cuniculus]
          Length = 276

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 88/257 (34%), Gaps = 25/257 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P        G++  
Sbjct: 23  RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEFAAPP-ADAPDKGYVVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115
              + P  +         SG  G  +Q   + I   +    ++    L    G    ++ 
Sbjct: 82  NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSRIIQKEDLCISPGKLAWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
           CD+  +  DG    A       AL +             + + + K +    ++ H  A 
Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVAT 196

Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           S  +      IVD    E+         VM + G +  +      +  +       ++ A
Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255

Query: 224 KDRIADLIKLQKDVISN 240
             R  ++ KL  +VI +
Sbjct: 256 VTRHKEVKKLMDEVIKS 272


>gi|255943151|ref|XP_002562344.1| Pc18g05170 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587077|emb|CAP94741.1| Pc18g05170 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 265

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 87/266 (32%), Gaps = 43/266 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI---RNTKHG 57
           +RL GR+ N++R +      +  + GS  +  G+T ++ +     +          + H 
Sbjct: 14  LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTSIMCSVHGPAEGRRGDGGSAGSGHA 73

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +  +  +   +  +R +R   S RQ  R   I   +  A +S +         I I   
Sbjct: 74  VVEVDVNVAGFAGVDRKRRAGGSDRQSSR---IATTLRSAFQSHLHTYLYPHSTISIHVS 130

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHM-----------------------EDCSNKFQLS 154
           V+ ADG    AA+    +AL D    M                       ++      LS
Sbjct: 131 VLSADGSLLAAALNACTLALVDAGIPMPGLLCGCTSGMSGSASTPRDPRHDELDPLLDLS 190

Query: 155 QVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
              +  + +++       P+ + +  ED          M               +     
Sbjct: 191 LPEEQELPSLTVATTTAVPVGENNMDEDEEAMKVCVLTM--------------ESKVHAT 236

Query: 215 HFFAMLNLAKDRIADLIKLQKDVISN 240
           +   ML +  D  + + +L + VI  
Sbjct: 237 YLETMLAVGIDGCSQIRELLEGVIKG 262


>gi|197100218|ref|NP_001125193.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Pongo
           abelii]
 gi|55727278|emb|CAH90395.1| hypothetical protein [Pongo abelii]
          Length = 703

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 19/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R +S    + K   GS L + G T +L T T +        ++V   I  
Sbjct: 278 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 337

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   ++ R+ G       +  +AL  V+         I 
Sbjct: 338 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHG----ALAEKALYPVIPRDF--PFTIR 391

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  V K        G +  Y 
Sbjct: 392 VTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEK---GEIEDYR 448

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T+ G I  +Q   +            +  A     ++++
Sbjct: 449 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 507

Query: 233 LQKDVISNE 241
           +    IS  
Sbjct: 508 IMNKTISKP 516



 Score = 59.0 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 19/144 (13%)

Query: 69  STGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--G 124
           +   R+    +    G   +EI   R+I R++R +         Q++  C+++  DG   
Sbjct: 27  AAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNE 84

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               AI GA VAL                     G V A+  G++ G  +V+    E S+
Sbjct: 85  PDVLAINGASVALS-------------LSDIPWNGPVGAVRIGIIDGECVVNPTRKEMSS 131

Query: 185 IDVDANFVMTDSGHIVEVQGSAER 208
             ++          IV ++ SAE 
Sbjct: 132 STLNLVVAGAPKSQIVMLEASAEN 155


>gi|261392873|emb|CAX50454.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase; PNPase; CAP87K) [Neisseria meningitidis
           8013]
          Length = 706

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|238755159|ref|ZP_04616505.1| hypothetical protein yruck0001_25730 [Yersinia ruckeri ATCC 29473]
 gi|238706606|gb|EEP98977.1| hypothetical protein yruck0001_25730 [Yersinia ruckeri ATCC 29473]
          Length = 706

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   +     I +  +
Sbjct: 375 SFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSPSEFPYTIRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKDEENFVV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     L+ AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQEALSQAKGARLHILGV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISTP 544



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 66/212 (31%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           +++   +  + A  + +V   DT +  T   +         +     +   T   G +P 
Sbjct: 16  VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR         R+I R +R +     L   Q+I     +         
Sbjct: 75  --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +  ++     +E    S+D     +
Sbjct: 177 LVVAGTAAAVLMV---ESEADILSEDQMLGAV 205


>gi|330991187|ref|ZP_08315140.1| Polyribonucleotide nucleotidyltransferase [Gluconacetobacter sp.
           SXCC-1]
 gi|329761773|gb|EGG78264.1| Polyribonucleotide nucleotidyltransferase [Gluconacetobacter sp.
           SXCC-1]
          Length = 761

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 87/247 (35%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I     +   A GS L   G+T  L  ATL       I +   G    
Sbjct: 361 RIDGRDLETIRPIVSEVGILPRAHGSALFTRGETQALVVATLGTGQDEQIVDALEGEYRN 420

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R    GR   R     ++  RA+  ++         + +  +
Sbjct: 421 NFMLHYNFPPFSVGE-CGRMGSPGR---REIGHGKLAWRAIHPLLPGKDTFPYTMRVVSE 476

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A + G  +AL D                 LK  VA I+ G++        
Sbjct: 477 ITESNGSSSMATVCGTSLALMDAGV-------------PLKRPVAGIAMGLIKEEDDFAV 523

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G +  +Q   +  + + +     L  A+     ++  
Sbjct: 524 LSDILGDEDHLGDMDFKVAGTEQG-VTALQMDIKITSITPEIMKIALGQARQGRLHILGE 582

Query: 234 QKDVISN 240
               ++ 
Sbjct: 583 MAKALTE 589



 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 77/227 (33%), Gaps = 27/227 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ +V +GDT +L TA    +++     +     +       G +
Sbjct: 63  RPLVLETGKIARQADGAVVVTYGDTVVLCTAVGAKSVKPGQDFFPLTVNYQEKAYAAGKI 122

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR         R+I R +R +   +     Q++        +    
Sbjct: 123 P---GGFFKRE---GRPSEAEVLNSRLIDRPIRPLFPENFRNEVQVVATVLSHDMENDPA 176

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G   AL                     G V A   G   G  +++    +    +
Sbjct: 177 VVALIGCSAALTLSGI-------------PFFGPVGAARVGYSNGKYVLNPTISQLKESE 223

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +D     T  G ++     +E    S+D     +    +    +I L
Sbjct: 224 LDLVVAGTSEGVLMV---ESEAVELSEDVMLGAVTFGHEAFQPVIDL 267


>gi|114649399|ref|XP_001147508.1| PREDICTED: exosome component 8 isoform 3 [Pan troglodytes]
 gi|114649401|ref|XP_001147275.1| PREDICTED: exosome component 8 isoform 1 [Pan troglodytes]
          Length = 246

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 24/228 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P        G++  
Sbjct: 23  RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-TDAPDKGYVVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL---GSRQIII-D 115
              + P  +         SG  G  +Q   + I   +    ++    L     + + +  
Sbjct: 82  NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
           CD+  +  DG    A       AL +             + + + K +    ++ H  A 
Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVAT 196

Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
           S  +      IVD    E+         VM + G +  +         
Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGMFPPL 244


>gi|224125980|ref|XP_002319726.1| predicted protein [Populus trichocarpa]
 gi|222858102|gb|EEE95649.1| predicted protein [Populus trichocarpa]
          Length = 853

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 86/238 (36%), Gaps = 17/238 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-----VPMWIRNTKH 56
           R  GR    +R I  +  +   A GS L   G+T  L   TL +K     V   +   + 
Sbjct: 376 RSDGRTPEGIRPIDSSCGLLPRAHGSALFTRGETQSLAVVTLGDKQMAQRVDNLVDEEEF 435

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P   G   +  A S R+ G       +  RAL  ++         + ++ 
Sbjct: 436 KRFYLQYSFPPSCVGEVGRIGAPSRREIGHGM----LAERALEPILPSENDFPYTVRVES 491

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175
            + +++G +  A++ G  +AL D    ++       +     G V         G P++ 
Sbjct: 492 TITESNGSSSMASVCGGCLALQDAGVPVKCMIAGIAM-----GMVLDTEEFGGDGTPLIL 546

Query: 176 -DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            D+   ED++ D+D      + G +   Q   +    +       L  A+D    ++ 
Sbjct: 547 SDITGSEDASGDMDFKVAGNEDG-VTAFQMDIKVGGITLPVMRTALLQARDGRKHILA 603



 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 80/224 (35%), Gaps = 27/224 (12%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN--TKHGWITAEYGMLPR 68
           R I +      + A GS  V  G+T + T+  L++ VP    +           +    R
Sbjct: 26  RHIMVETGHLGRQASGSVTVTDGETIIYTSVCLDD-VPSEPSDFYPLSVNYQERFSAAGR 84

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126
           ++G   KRE   GR       I R+I R LR  +        QI+    V+  DG     
Sbjct: 85  TSGGFFKRE---GRLKDHEVLICRLIDRPLRPTMLKGFYHETQIL--SWVLSYDGLHSPD 139

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
           + A+T A +AL                       +A +  G++    IV+    E     
Sbjct: 140 SLAVTAAGIALA-------------LSEVPNTKVIAGVRVGLVDNKFIVNPTTKEMEESK 186

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           +D     TDS  I  ++G        ++     + + +D +  +
Sbjct: 187 LDLLLAGTDSA-IFMIEG--YCNFLPEEKLLEAVQIGQDAVRTI 227


>gi|149064770|gb|EDM14921.1| exosome component 8 (predicted), isoform CRA_a [Rattus norvegicus]
          Length = 276

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 89/257 (34%), Gaps = 25/257 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P  +     G++  
Sbjct: 23  RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-VDAPDRGYVVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115
              + P  +         +G  G  +Q   + I   +    ++    L    G    ++ 
Sbjct: 82  NVDLPPLCSS-----RFRTGPPGEEAQVTSQFIADVIENSQIIKKEDLCISPGKLAWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
           CD+  +  DG    A       AL +             + + + K +    ++ +  A 
Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRANPVAT 196

Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           S  +      IVD    E+         VM + G +  +      +  +       ++ A
Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLSTGTLTVVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255

Query: 224 KDRIADLIKLQKDVISN 240
             R  ++ KL  +VI +
Sbjct: 256 VTRHKEVSKLLDEVIQS 272


>gi|28193987|gb|AAO33354.1|AF465249_1 polynucleotide phosphorylase [Mus musculus]
          Length = 748

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 19/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R IS    + K   GS L + G T +L T T +        +++   +  
Sbjct: 323 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAVNG 382

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   V+ R+ G       +  +AL  V+         I 
Sbjct: 383 VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHG----ALAEKALCPVIPKDF--PFTIR 436

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G   AL D    +        +  V K +      G +  Y 
Sbjct: 437 VTSEVLESNGSSSMASACGGSXALMDAGVPISSAVAGVAVGLVTKTNPEK---GEIEDYR 493

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T+ G I  +Q   +            +  A     ++++
Sbjct: 494 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGVPIKIIMEAIQQASVAKKEILQ 552

Query: 233 LQKDVISNE 241
           +    IS  
Sbjct: 553 IMNKTISKP 561



 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 27/203 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R++ ++     ++A+G  +++ GDT ++ TA   T             +    A  G +P
Sbjct: 20  RKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 79

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
               N ++RE  S     R     R+I R++R +         Q++  C+++  DG    
Sbjct: 80  ---TNYLRREIGS---SDREVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEP 131

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              A+ GA VAL                     G V A+  GM+ G  +V+    E S+ 
Sbjct: 132 DILAVNGASVALS-------------LSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSS 178

Query: 186 DVDANFVMTDSGHIVEVQGSAER 208
            ++          IV ++ SAE 
Sbjct: 179 TLNLVVAGAPKSQIVMLEASAEN 201


>gi|330813312|ref|YP_004357551.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
           sp. IMCC9063]
 gi|327486407|gb|AEA80812.1| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter
           sp. IMCC9063]
          Length = 695

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 27/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+  R+ N++R+I     V     GS L   G+T  L  ATL    +E+    +   +  
Sbjct: 313 RIDRRKLNEVRDIKCEVGVLPKVHGSSLFTRGETQALVVATLGTSDDEQRLETLDGAERS 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G  V R     R+ G      ++  RA+ S +           I  +
Sbjct: 373 RFMLHYNFPPYSVGE-VGRIGTGRREIGHG----KLAWRAINSSLPSKEEFPYTFRIVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A + GA +AL D                 +K  +A I+ G++        
Sbjct: 428 ITESNGSSSMATVCGASLALMDAGV-------------PIKTPIAGIAMGLIKEGDDYSI 474

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    + D     L+ AK+    ++  
Sbjct: 475 LSDILGDEDHLGDMDFKVAGTKDG-ITSLQMDIKITGITFDIMEKALDQAKEGRIHILGE 533

Query: 234 QKDVISN 240
               ++ 
Sbjct: 534 MAKALTE 540



 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 82/229 (35%), Gaps = 27/229 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           +++L    V++ A+G+ ++  G+T +L TA      +  +  +     +       G +P
Sbjct: 15  KLTLETGRVARQADGAVMLTCGETVILATAVAAKQAKPDMDFFPLTVNYQEKYYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KREA   R       I R+I R +R +   S     Q++        +     
Sbjct: 75  ---GGYFKREA---RPTEAETLISRLIDRPIRPLFPSSFRNETQVLPTVISYDKENDP-- 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                      + L  +   +          G VAA   GM+ G  +++    +     +
Sbjct: 127 -----------EALALIASSAALAISGIPFMGPVAAAKVGMIDGEFVLNPTKEQIKDSQL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +     T+   ++     +E +  S+      +    D+  ++I L KD
Sbjct: 176 ELIVAGTEDAVLMV---ESEASGLSEKQMLDAVKFGHDKAKEVINLIKD 221


>gi|315149071|gb|EFT93087.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0012]
          Length = 704

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 89/240 (37%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  L+  T     E +V   +     
Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQVIDGLGVQDS 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL  ++         I +  
Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQIIPSEEDFPYTIRLVA 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      L+ AK    ++++
Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILE 539



 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 91/232 (39%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L    A+ E K V  +     +       G +P
Sbjct: 14  RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   R+    R+I R +R +         QI      +  D     
Sbjct: 74  ---GGFIKRE---GRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVDQDCTPEM 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  +++    +    D+
Sbjct: 128 AAMFGSSLALA-------------ISDIPFDGPIAGVDVGRIDGEYVLNPTVEQAEQTDI 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    D I +L+  Q+++++
Sbjct: 175 ELTVAGTKEA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223


>gi|187918659|ref|YP_001884225.1| polynucleotide phosphorylase/polyadenylase [Borrelia hermsii DAH]
 gi|119861507|gb|AAX17302.1| polyribonucleotide nucleotidyltransferase [Borrelia hermsii DAH]
          Length = 727

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 91/247 (36%), Gaps = 27/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR   Q+R+I     + K   GS L   G+T  L       +++E++   I   K 
Sbjct: 325 LRTDGRTSTQIRDIVAEVDLLKRTHGSSLFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 384

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G    R     R+ G       +  R+L +++         I +  
Sbjct: 385 LNFMLHYNFPPFSVGE-TGRLMTGRREVGHGH----LAQRSLEAMLPKKDDFPYTIRVVS 439

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++++++G +  A +    ++L                   +K  VA I+ G++       
Sbjct: 440 EILESNGSSSMATVCSGSMSLMAAGV-------------PVKEQVAGIAMGLISDGDKYV 486

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I   Q   + +  ++      L  A+     ++ 
Sbjct: 487 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKISNVTKQLMKDALEQARIGRMHILS 545

Query: 233 LQKDVIS 239
           +   VIS
Sbjct: 546 IMDSVIS 552



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 87/231 (37%), Gaps = 31/231 (13%)

Query: 16  LTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           L   +  K A G+ L  +G + +L T     ++ E +     + ++       G +P   
Sbjct: 26  LETGLLAKQANGAVLATYGGSTVLATVCCSDSVRENLDFVPLSVEYNEKYYAAGKIP--- 82

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTRTA 128
           G  +KRE   G+   +   + R+I R +R + D      R+I +    +  D        
Sbjct: 83  GGFIKRE---GKPKDKEVLVSRLIDRPMRPLFD--KRFGREIQVVPTTLSTDQMNPPDIV 137

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            +  A+ A+             F       G +AA+    L    IV+  + E     +D
Sbjct: 138 GMNAAFAAV-------------FLSDIPFNGPIAAVRLAYLNNEFIVNPSFDEIQDSILD 184

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
              V      I  V+G A     S++   + ++ A + I  +  LQK+ +S
Sbjct: 185 I-VVAGSLDGITMVEGGANE--VSEEVLLSAIDKAYEYIKQICNLQKEFVS 232


>gi|77359947|ref|YP_339522.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|123588883|sp|Q3IJ73|PNP_PSEHT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|76874858|emb|CAI86079.1| polynucleotide phosphorylase, has polyadenylase activity; part of
           the degradosome [Pseudoalteromonas haloplanktis TAC125]
          Length = 708

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 91/246 (36%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+ + +R + +   V     GS +   G+T  L TATL  +        +  T   
Sbjct: 317 RIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDSQLIDDLTGTHKN 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G       +  R + +V+         I +  +
Sbjct: 377 HFMLNYNFPPFCVGETGFVGSPKRREIGHG----NLAKRGIAAVMPTLTEFPYSIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL +                 +K  VA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGTSLALMNAGV-------------PIKASVAGIAMGLVKEDDKFVV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +Q+     L  AK     ++++
Sbjct: 480 LSDILGDEDHLGDMDFKVAGT-AGGITALQMDIKIEGITQEIMQIALKQAKAARLHILEV 538

Query: 234 QKDVIS 239
               IS
Sbjct: 539 MDKAIS 544



 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 78/228 (34%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----MLPR 68
           ++L    +++ A+G+ L   GDT +L T   + +            +T  Y        R
Sbjct: 15  VTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQP---GQDFFPLTVNYQERMYAAGR 71

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR       I R+I R +R +     +   Q+I     +  +      
Sbjct: 72  IPGGFLKRE---GRPNDGETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVNPEIQPDMV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G   AL                     G + A   G + G  +++    E     +D
Sbjct: 129 ALIGTSAALAISGI-------------PFSGPIGATRVGYIDGEYVLNPTLKELEESKLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD+  ++     +E    ++D     +    ++   +I   K+
Sbjct: 176 LVVAGTDNAVLMV---ESEADVLAEDIMLGAVVYGHEQAQAIITAIKE 220


>gi|239907801|ref|YP_002954542.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio magneticus
           RS-1]
 gi|239797667|dbj|BAH76656.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio magneticus
           RS-1]
          Length = 751

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 89/249 (35%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKH 56
           +RL GR    +R I +   V     GS L   G+T  L  A    T +E+    +    +
Sbjct: 320 IRLDGRNTTTVRPIGIEVGVLPRTHGSALFARGETKALCVATLGSTGDEQKIETLNGETY 379

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P   G        S R+ G       +  R++  V+         + I  
Sbjct: 380 KRFMLHYNFPPYCVGEVKMLRGPSRREIGHG----ALAERSILPVLPGPEEFPFTMRIVS 435

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
            V++++G +  A++ GA +AL D                 +K  VA I+ G++       
Sbjct: 436 QVMESNGSSSMASVAGASLALMDAGV-------------PIKAPVAGIAMGLIKEDDDFL 482

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G +  +Q   +     Q      LN AKD    ++ 
Sbjct: 483 VLTDILGDEDAMGDMDFKVAGTADG-VTGIQMDIKITGIPQAVMRQALNQAKDARLHILG 541

Query: 233 LQKDVISNE 241
               V+   
Sbjct: 542 RMAAVLPEP 550



 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 88/230 (38%), Gaps = 30/230 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPRS 69
           +++    ++  A+G+  ++ G T +L TA    L E+   +     +  +    G +P  
Sbjct: 19  VTIETGRLANQADGAIWIQSGGTVVLVTACTQALAEEKGFFPLVVDYQEMAYAAGRIP-- 76

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRT 127
            G+  +RE   GR   R   + R+I R  R +         QII    V+ ADG      
Sbjct: 77  -GSYFRREI--GRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIAT--VLSADGEVEPDV 131

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA  ALH                   +G +A    G + G  +++    +      
Sbjct: 132 LALTGASAALH-------------LSKIPFQGPIAGGRVGYIDGQFVLNPTVAQ-IAAGA 177

Query: 188 DANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D N V   S   +V V+G+      S++     L      I  L+ LQ+ 
Sbjct: 178 DLNLVFAASRDAVVMVEGAGR--FVSEELLADALEFGHKAILPLLDLQEQ 225


>gi|330443786|ref|YP_004376772.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pecorum
           E58]
 gi|328806896|gb|AEB41069.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pecorum
           E58]
          Length = 693

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 90/247 (36%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKH 56
           +R   R    +R IS+   +     GSCL   G+T    + T   E     +  +     
Sbjct: 313 IRADKRALTTIRPISIEVALLPRTHGSCLFTRGETQTVAVCTLGNETMAQRYENLNGEGS 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +     G  G R     ++  +AL   +  +      I I+ 
Sbjct: 373 SKFYLQYSFPPFSVGEVGR----IGSPGRREIGHGKLAEKALAHALPDATQFPYTIRIES 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           ++ +++G +  A++ G  +AL D                 +K  +A I+ G++       
Sbjct: 429 NITESNGSSSMASVCGGCLALMDAGV-------------PIKTPIAGIAMGLILDAEEAI 475

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D        G I   Q   +    + D     L  AK+   ++++
Sbjct: 476 ILSDISGLEDHLGDMDFKVAGNLEG-ITAFQMDIKIEGITLDIMKQALAQAKEGRQEILR 534

Query: 233 LQKDVIS 239
           +  + ++
Sbjct: 535 IMHENLA 541



 Score = 75.5 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 88/237 (37%), Gaps = 36/237 (15%)

Query: 9   NQMREISLTRR-VSKYAEGSCLVKFGDTHL---LTTATLEEK---VPMWIRNTKHGWITA 61
            + R +      +++ A GS +V+  DT +   +  A L E    +P  +   +      
Sbjct: 11  EEGRVLIFETGKIARQAGGSVVVRSQDTLVFTSVCAADLSETSDFLPFRVDYQEK----- 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            +    ++ G  +KRE   GR   +   + R+I R+LR  +    +   QI+        
Sbjct: 66  -FSSTGKTLGGFIKRE---GRPTEKEILVSRLIDRSLRPSLPNRLMQDIQILSYVW--SY 119

Query: 122 DGGTR--TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           DG T     AI GA  AL                +      V+ +  G + G  IV+   
Sbjct: 120 DGQTLPDPLAICGAGAALA-------------LSNIPQNNIVSGVRIGYIDGQWIVNPTK 166

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            E      D     T++  I+ ++G    A F+++     ++     I  + K  KD
Sbjct: 167 TELDNSPFDLVLAGTENA-ILMIEG--HCAFFTEEQVLEAIDYGHKHIITICKGLKD 220


>gi|315648088|ref|ZP_07901189.1| polyribonucleotide nucleotidyltransferase [Paenibacillus vortex
           V453]
 gi|315276734|gb|EFU40077.1| polyribonucleotide nucleotidyltransferase [Paenibacillus vortex
           V453]
          Length = 701

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 87/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR  +++R I     +     GS L   G T  L   T  A  + ++   I   + 
Sbjct: 313 VRPDGRGLSEIRPIDCDTSLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGIDLEET 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      A   R+ G       +  RAL  V+         I +  
Sbjct: 373 KRFMHHYNFPPFSVGEARPLRAPGRREIGHG----ALGERALSKVIPNEVEFPYTIRLVS 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +VI+++G T  A+I  + +A+ D                 +K  VA ++ G++       
Sbjct: 429 EVIESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGVAMGLIKDGDHVS 475

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +     +      L  AK+    ++ 
Sbjct: 476 ILTDIQGMEDHLGDMDFKVAGTPEG-VTAIQMDIKIDGIDRAILQEALQQAKEGRMHILG 534

Query: 233 LQKDVISNE 241
              + I   
Sbjct: 535 KMAEAIQQP 543



 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 84/232 (36%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +      ++K A  + +V++G+T +L T T     + +  +     +       G +P
Sbjct: 12  RPLVFETGRLAKQANAAVMVRYGETAVLCTVTASSEPKDLDFFPLTVNYEERLYAVGKIP 71

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+  R +R +         Q++     +  D     
Sbjct: 72  ---GGFIKRE---GRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEPEI 125

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G   AL                     G +  ++ G + G  +V+ D  +    D+
Sbjct: 126 AAMIGTSAALS-------------ISDVPFNGPIGGVAVGRVDGNFVVNPDIAQQEASDI 172

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                 T    I+ V+  AE     ++     +    + I  ++   +++++
Sbjct: 173 YLVVSGTKDA-IMMVE--AEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVA 221


>gi|310817255|ref|YP_003965219.1| polyribonucleotide nucleotidyltransferase [Ketogulonicigenium
           vulgare Y25]
 gi|308755990|gb|ADO43919.1| polyribonucleotide nucleotidyltransferase [Ketogulonicigenium
           vulgare Y25]
          Length = 713

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 90/234 (38%), Gaps = 27/234 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +++R I     +   A GS L   G+T  L   TL         +  HG   +
Sbjct: 318 RIDGRSLDEVRPIVSETGLLPRAHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+  +      I +  +
Sbjct: 378 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPANTDFPYTIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           + +++G +  A++ G  +++ D                 LK  VA ++ G++        
Sbjct: 434 ITESNGSSSMASVCGGSLSMLDAGV-------------PLKAPVAGVAMGLVLEKDGSWA 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED   D+D     T++G I  +Q   + A  + +     L  A+  
Sbjct: 481 VLTDILGDEDHLGDMDFKVAGTEAG-ITSLQMDIKVAGITPEIMRKALAQARTG 533



 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 77/247 (31%), Gaps = 48/247 (19%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A+GS +   G+T ++   T     +     +     +       G +P 
Sbjct: 16  LTLETGKIARQADGSVIATLGETSVMANVTFAKAPKPGQDFFPLTVHYQEKYYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   R   I R+I R  R +          +++   V+  D      
Sbjct: 75  --GGFFKREA---RPTERETLISRLIDRPCRPLFVEGFKHE--VLVMATVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE----D 182
             A+  A  AL                     G + A   G   G   ++    E     
Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIGAARVGYSNGAYTLNPAIDELHDIR 174

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM---------------LNLAKDRI 227
           +  +   + V+  +   V +  S E    S+D                    ++LA+D  
Sbjct: 175 NKSEQRLDLVVAGTKDAVMMVES-EAYELSEDEILGAVVFAHEQMQPVIDLIIDLAEDAA 233

Query: 228 ADLIKLQ 234
            +    Q
Sbjct: 234 KEPFDFQ 240


>gi|71064655|ref|YP_263382.1| polynucleotide phosphorylase/polyadenylase [Psychrobacter arcticus
           273-4]
 gi|123761801|sp|Q4FVL0|PNP_PSYA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|71037640|gb|AAZ17948.1| putative polyribonucleotide nucleotidyltransferase [Psychrobacter
           arcticus 273-4]
          Length = 700

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 92/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R + +   V  +  GS L   G+T  L T TL     + + ++  G I  
Sbjct: 320 RIDGRDLETVRALDVQVGVLPFTHGSALFTRGETQALVTTTLGNTRDVNMIDSLAGTIRD 379

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +      R+ G      R+  R +++++  S      I +  +
Sbjct: 380 HFMLHYNFPHFSVGETGREGIPKRREIGHG----RLARRGVQAMLPDSDRFPYVIRVVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++  G     
Sbjct: 436 ITESNGSSSMASVCGASLALMDAGV-------------PIKAPVAGIAMGLVKEGERFAV 482

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    + D     L  A      ++  
Sbjct: 483 LSDILGDEDHLGDMDFKVAGSKDG-ITALQMDIKIEGITPDIMEQALKQAHAGRIHILDA 541

Query: 234 QKDVI 238
              V+
Sbjct: 542 MNKVL 546



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 65/217 (29%), Gaps = 26/217 (11%)

Query: 13  EISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++ +          S LV  G   +L  A ++    E    +     +       G +P 
Sbjct: 17  QVVIETGRIARQANSILVHMGGVTVLVAAVVKSDAKEGQNFFPLTVNYQEKMYAAGKIPG 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
           + G R       GR         R+I R +R +     +   QI               A
Sbjct: 77  AYGKR------EGRASESETLTSRLIDRPIRPLFPEGYVNEIQITATVVSSDKTQSADIA 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G VAA   G + G  +++    E    D+D
Sbjct: 131 ALIGASAALA-------------ISDAPFNGPVAAARVGFINGEYVLNPTLEELKESDLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                T S  ++     +E A  S+D     +     
Sbjct: 178 LVVAGTKSAVLMV---ESEAAELSEDQMLGAVLYGHQ 211


>gi|332970461|gb|EGK09453.1| polyribonucleotide nucleotidyltransferase [Kingella kingae ATCC
           23330]
          Length = 708

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 95/244 (38%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTNVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRVGAPKRREIGHG----RLAKRALVAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+ +  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   +  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILAQMQTA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 85/238 (35%), Gaps = 36/238 (15%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKDIKEGQDFFPLTVDYFERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI---IIDCDV-IQADGG 124
             G   KRE   G+Q  +     R+I R +R +         QI   +I CD  I +D  
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVISCDPEIDSD-- 127

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+ GA  AL                     G + A   G +    +++    + S 
Sbjct: 128 --IPAMIGASAALV-------------LSGVPFAGPIGAARVGYVNNAYVLNPTKQQLSR 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
             +D     T+   ++     +E     +D     +    +++  +I    + ++ EV
Sbjct: 173 SQLDLVVAGTEQAVLMV---ESEADILPEDVMLGAVVFGHEQMQTVITAINE-LAQEV 226


>gi|119953582|ref|YP_945792.1| polynucleotide phosphorylase/polyadenylase [Borrelia turicatae
           91E135]
 gi|119862353|gb|AAX18121.1| polyribonucleotide nucleotidyltransferase [Borrelia turicatae
           91E135]
          Length = 727

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 91/247 (36%), Gaps = 27/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR   Q+R+I     + +   GS L   G+T  L       +++E++   I   K 
Sbjct: 325 LRTDGRNPTQIRDIVAEVDLLRRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 384

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G    R     R+ G       +  R+L +++         I +  
Sbjct: 385 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRSLEAMLPKKDDFPYTIRVVS 439

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++++++G +  A +    ++L                   +K  VA I+ G++       
Sbjct: 440 EILESNGSSSMATVCSGSMSLMAAGV-------------PVKEQVAGIAMGLVSEGDKYV 486

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I   Q   + +  ++      L  A+     ++ 
Sbjct: 487 ILSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKISNVTKQLMKDALAQARIGRMHILS 545

Query: 233 LQKDVIS 239
           +   VIS
Sbjct: 546 IMDSVIS 552



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 85/230 (36%), Gaps = 31/230 (13%)

Query: 16  LTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           L   +  K A G+ L  +G + +L T     +  E +     + ++       G +P   
Sbjct: 26  LETGLLAKQANGAVLATYGGSTVLATVCCSDSARENLDFVPLSVEYNEKYYAAGKIP--- 82

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTRTA 128
           G  +KRE   G+   +   + R+I R +R + D      R+I +    +  D        
Sbjct: 83  GGFIKRE---GKPKDKEVLVSRLIDRPMRPLFD--KRFGREIQVVPTTLSTDQMNPPDIV 137

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            +  A+ A+             F       G +AA+    L    IV+  + E     +D
Sbjct: 138 GMNAAFAAV-------------FLSDIPFNGPIAAVRIAYLNSEFIVNPSFDEIQDSILD 184

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
              V      I  V+G A     S++   A ++ A + I  +  LQK+ I
Sbjct: 185 I-VVAGSLDGITMVEGGANE--VSEEVLLAAIDQAYEYIKQICNLQKEFI 231


>gi|25012192|gb|AAN71212.1| GM16802p [Drosophila melanogaster]
          Length = 717

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 90/250 (36%), Gaps = 17/250 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56
           +R  GR  +Q+R IS    + K   GS L + G T +  T +L+ +      ++      
Sbjct: 300 LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDS 359

Query: 57  GWITA-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           G + A      Y   P +TG   +     G  G R      +  R+L   +         
Sbjct: 360 GGLKAKNFMLHYEFPPYATGEVGR----IGPVGRREMGHGALAERSLLPTLPND--YPFT 413

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
           + +  +V++++G +  A++ G  +AL D    +   +    +  V K      +  +   
Sbjct: 414 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTK-FENDDTKHLQDY 472

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G    +Q   +            L  A D  + ++
Sbjct: 473 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSKIL 531

Query: 232 KLQKDVISNE 241
            +  + I   
Sbjct: 532 DIMSEAIREP 541



 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 22/177 (12%)

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           +  S+G R+    +    G   +EI   R+I R+LR +         Q++ +   + A  
Sbjct: 48  MTFSSG-RIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVH 106

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
                AI  A +AL                     G + A+  G+  G  +++    E  
Sbjct: 107 SPDVLAINAASMALS-------------LSDIPWNGPIGAVRVGLCDGEVLINPTRRELQ 153

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN----LAKDRIADLIKLQKD 236
           T  +D     T    +V ++G  +     Q      +      A+  I ++ +LQK 
Sbjct: 154 TSQLDLVVSATKQNLVVMLEG--KGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKA 208


>gi|257096733|sp|A1R0N0|PNP_BORT9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 717

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 91/247 (36%), Gaps = 27/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR   Q+R+I     + +   GS L   G+T  L       +++E++   I   K 
Sbjct: 315 LRTDGRNPTQIRDIVAEVDLLRRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G    R     R+ G       +  R+L +++         I +  
Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREIGHGH----LAQRSLEAMLPKKDDFPYTIRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++++++G +  A +    ++L                   +K  VA I+ G++       
Sbjct: 430 EILESNGSSSMATVCSGSMSLMAAGV-------------PVKEQVAGIAMGLVSEGDKYV 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I   Q   + +  ++      L  A+     ++ 
Sbjct: 477 ILSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKISNVTKQLMKDALAQARIGRMHILS 535

Query: 233 LQKDVIS 239
           +   VIS
Sbjct: 536 IMDSVIS 542



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 85/230 (36%), Gaps = 31/230 (13%)

Query: 16  LTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           L   +  K A G+ L  +G + +L T     +  E +     + ++       G +P   
Sbjct: 16  LETGLLAKQANGAVLATYGGSTVLATVCCSDSARENLDFVPLSVEYNEKYYAAGKIP--- 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTRTA 128
           G  +KRE   G+   +   + R+I R +R + D      R+I +    +  D        
Sbjct: 73  GGFIKRE---GKPKDKEVLVSRLIDRPMRPLFD--KRFGREIQVVPTTLSTDQMNPPDIV 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            +  A+ A+             F       G +AA+    L    IV+  + E     +D
Sbjct: 128 GMNAAFAAV-------------FLSDIPFNGPIAAVRIAYLNSEFIVNPSFDEIQDSILD 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
              V      I  V+G A     S++   A ++ A + I  +  LQK+ I
Sbjct: 175 I-VVAGSLDGITMVEGGANE--VSEEVLLAAIDQAYEYIKQICNLQKEFI 221


>gi|257096732|sp|B2S1E9|PNP_BORHD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 717

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 91/247 (36%), Gaps = 27/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR   Q+R+I     + K   GS L   G+T  L       +++E++   I   K 
Sbjct: 315 LRTDGRTSTQIRDIVAEVDLLKRTHGSSLFTRGETQALAVTTLGTSIDEQIMDDIDGDKR 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G    R     R+ G       +  R+L +++         I +  
Sbjct: 375 LNFMLHYNFPPFSVGE-TGRLMTGRREVGHGH----LAQRSLEAMLPKKDDFPYTIRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++++++G +  A +    ++L                   +K  VA I+ G++       
Sbjct: 430 EILESNGSSSMATVCSGSMSLMAAGV-------------PVKEQVAGIAMGLISDGDKYV 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I   Q   + +  ++      L  A+     ++ 
Sbjct: 477 VLSDILGEEDHLGDMDFKVAGTKNG-ITGFQMDIKISNVTKQLMKDALEQARIGRMHILS 535

Query: 233 LQKDVIS 239
           +   VIS
Sbjct: 536 IMDSVIS 542



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 87/231 (37%), Gaps = 31/231 (13%)

Query: 16  LTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           L   +  K A G+ L  +G + +L T     ++ E +     + ++       G +P   
Sbjct: 16  LETGLLAKQANGAVLATYGGSTVLATVCCSDSVRENLDFVPLSVEYNEKYYAAGKIP--- 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTRTA 128
           G  +KRE   G+   +   + R+I R +R + D      R+I +    +  D        
Sbjct: 73  GGFIKRE---GKPKDKEVLVSRLIDRPMRPLFD--KRFGREIQVVPTTLSTDQMNPPDIV 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            +  A+ A+             F       G +AA+    L    IV+  + E     +D
Sbjct: 128 GMNAAFAAV-------------FLSDIPFNGPIAAVRLAYLNNEFIVNPSFDEIQDSILD 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
              V      I  V+G A     S++   + ++ A + I  +  LQK+ +S
Sbjct: 175 I-VVAGSLDGITMVEGGANE--VSEEVLLSAIDKAYEYIKQICNLQKEFVS 222


>gi|291532399|emb|CBL05512.1| polyribonucleotide nucleotidyltransferase [Megamonas hypermegale
           ART12/1]
          Length = 574

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 89/250 (35%), Gaps = 28/250 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL----TTATLEEKVPMWIRNTKH 56
           +R  GR   ++R IS    +     GS L   G T +L      A  +E+V   I +   
Sbjct: 310 IRPDGRGLEEVRPISCEVGILPRTHGSALFTRGQTQILNVTTLGALGDEQVIDGIGDDTS 369

Query: 57  GWITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                 Y     S G  R  R       G R      +  RAL  V+         + + 
Sbjct: 370 KRYIHHYNFPGYSVGEARPMRS-----PGRREIGHGALAERALVPVIPSVEEFPYTLRLV 424

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V++++G +   ++ G+ ++L                   +K  V+  + G++      
Sbjct: 425 SEVLESNGSSSMGSVCGSTLSLMHAGV-------------PIKKPVSGCAMGLVKDGDAY 471

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED+  D+D     T  G I  +Q   +    S++   A L  AK     ++
Sbjct: 472 TILTDIQGMEDALGDMDFKVAGTPDG-ITAIQMDIKVDGLSREILAAALAQAKRGREFIL 530

Query: 232 KLQKDVISNE 241
               + IS  
Sbjct: 531 SKMLECISEP 540



 Score = 96.3 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 84/234 (35%), Gaps = 27/234 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R   +      K A G+ LV++G+T +L TAT      E V  +     +       G +
Sbjct: 11  RSFVVETGKMAKQANGAVLVRYGETVVLVTATASAEPREGVDFFPLTVDYEEKMYAVGKI 70

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR    +    R+I R +R +         QI+     ++ D    
Sbjct: 71  P---GGFIKRE---GRPAESAILNSRLIDRPIRPLFPEGYRNDVQIVATVLSVEQDNAPE 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            A + GA  AL                     G +A +  G + G  +++    +     
Sbjct: 125 IAGMIGASCALS-------------ISDIPFLGPIAGVRVGRIDGEFVINPTVEQREKS- 170

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            D N  +  S   V +  +      S++     +    + I  L+K Q++++  
Sbjct: 171 -DLNLTVAGSYDAVMMVEAG-ANELSEEVVLDAILFGHEEIKRLVKFQQEMMEK 222


>gi|187471092|sp|Q2IQ01|PNP_ANADE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 721

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 91/246 (36%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59
           R+ GR    +R+I+    +     GS L   G+T  L   TL             G +  
Sbjct: 324 RIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTLGTAEDEQRVEMLTGMVFK 383

Query: 60  --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G       +  RALR+V+         + +  D
Sbjct: 384 KFMLHYNFPPFSVGEVKFLRSPGRREIGHG----ALAERALRAVMPPEDQFPYTVRVVSD 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           +++++G +  A++ G  ++L D                 +K  VA I+ G++  G     
Sbjct: 440 IMESNGSSSMASVCGGCLSLMDAGV-------------PIKAPVAGIAMGLIKEGEKIAI 486

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     L+ A +    ++  
Sbjct: 487 LSDILGDEDHLGDMDFKVCGTAAG-ITSIQMDIKIGGVTREILEQALSQAAEGRKHILGE 545

Query: 234 QKDVIS 239
               +S
Sbjct: 546 MAKALS 551



 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 86/238 (36%), Gaps = 32/238 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
           E+ L    V+K A GS  V+ GD+ +L TA      +E +  +     +       G +P
Sbjct: 14  EVLLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDYQEKLFAAGRVP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G+  +RE   GR   +     R++ R+ R +         Q+I        +  T  
Sbjct: 74  ---GSFFRRE---GRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQENDTDV 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA  ALH                    G +A +    + G  + +         D 
Sbjct: 128 LALTGASAALH-------------ISDIPFGGPIAGVRVARVGGQLVANPTLA--QRADA 172

Query: 188 DANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ---KDVISNE 241
           D + VM  S   IV V+G A+    S+      L   +  +  L+  Q   +    N+
Sbjct: 173 DLDVVMAASRDAIVMVEGGAQE--VSEAVMIEALLFGQAAVQPLLDAQDALRAATGNK 228


>gi|53715606|ref|YP_101598.1| polynucleotide phosphorylase/polyadenylase [Bacteroides fragilis
           YCH46]
 gi|60683550|ref|YP_213694.1| polynucleotide phosphorylase/polyadenylase [Bacteroides fragilis
           NCTC 9343]
 gi|253566582|ref|ZP_04844035.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_2_5]
 gi|265767451|ref|ZP_06095117.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_16]
 gi|81313402|sp|Q5L7Z7|PNP_BACFN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81381032|sp|Q64N73|PNP_BACFR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|52218471|dbj|BAD51064.1| polyribonucleotide nucleotidyltransferase [Bacteroides fragilis
           YCH46]
 gi|60494984|emb|CAH09802.1| putative polyribonucleotide nucleotidyltransferase [Bacteroides
           fragilis NCTC 9343]
 gi|251944754|gb|EES85229.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_2_5]
 gi|263252756|gb|EEZ24268.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_16]
 gi|301165064|emb|CBW24632.1| putative polyribonucleotide nucleotidyltransferase [Bacteroides
           fragilis 638R]
          Length = 708

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 92/250 (36%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR+  ++R I           GS +   G+T  LT+ TL  K+   I +        
Sbjct: 319 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLAHGKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+ ++         + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHG----NLAHRALKRMIPED--YPYVVRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNAGEEKY 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     LN AK+    ++
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHIL 538

Query: 232 KLQKDVISNE 241
              ++ IS  
Sbjct: 539 GKIEETISEP 548



 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 90/230 (39%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHGWITAEYGML 66
           R I+L      K A+GS +++ G+T LL T    ++ VP         ++    A +G  
Sbjct: 15  RTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYKEKFAAFGRF 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR         R++ RALR +   +     ++ ++  +  ADG   
Sbjct: 75  P---GGFTKRE---GRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNIILFSADG--- 123

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                   V + D L  +   +          G ++ +    + G  +++  + +    D
Sbjct: 124 --------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGKFVINPTFDQLEQAD 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T   +I+ V+G  E +  S+      + +A + I    K Q +
Sbjct: 176 MDIMVAATYE-NIMMVEG--EMSEVSEAELLEAMKVAHEAIKVHCKAQME 222


>gi|194904919|ref|XP_001981085.1| GG11868 [Drosophila erecta]
 gi|190655723|gb|EDV52955.1| GG11868 [Drosophila erecta]
          Length = 771

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 88/250 (35%), Gaps = 17/250 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------ 54
           +R  GR  +Q+R IS    + K   GS L + G T +  T +L+ +      ++      
Sbjct: 354 LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLTALES 413

Query: 55  ---KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
              K       Y   P +TG   +     G  G R      +  R+L   +         
Sbjct: 414 GGLKAKNFMLHYEFPPYATGEVGR----IGPVGRRELGHGALAERSLLPTLPNE--YPFT 467

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
           + +  +V++++G +  A++ G  +AL D    +   +    +  V K      +  +   
Sbjct: 468 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTK-FENDDTKHLQDY 526

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G    +Q   +            L  A D  + ++
Sbjct: 527 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKVPGIPLKVVMESLQKATDAKSKIL 585

Query: 232 KLQKDVISNE 241
            +  + I   
Sbjct: 586 DIMSEAIREP 595



 Score = 85.9 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 90/234 (38%), Gaps = 30/234 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--ITAEYGMLPR 68
           R ++ +   ++++A G+ + + GDT ++ TA     V     N   G+  +  +Y +   
Sbjct: 50  RNMTFSSGRLARFANGTAVCQMGDTAVMVTA-----VAKSKPNPGQGFMPLVVDYRLKNA 104

Query: 69  STGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           ++G R+    +    G   +EI   R+I R+LR +         Q++ +   + A     
Sbjct: 105 ASG-RIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVHSPD 163

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI  A VAL                     G + A+  G+  G  +++    E  T  
Sbjct: 164 VLAINAASVALS-------------LSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQ 210

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN----LAKDRIADLIKLQKD 236
           +D     T    +V ++G  +     Q      +      A+  I ++ +LQK 
Sbjct: 211 LDLVVSATKQNLVVMLEG--KGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKA 262


>gi|325568458|ref|ZP_08144825.1| polyribonucleotide nucleotidyltransferase [Enterococcus
           casseliflavus ATCC 12755]
 gi|325158227|gb|EGC70380.1| polyribonucleotide nucleotidyltransferase [Enterococcus
           casseliflavus ATCC 12755]
          Length = 715

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 91/247 (36%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GRQ +++R ++    +     GS L   G T  L+  T     E ++   +   + 
Sbjct: 328 IRPDGRQLDEIRPLASEVGLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEES 387

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL  V+         I +  
Sbjct: 388 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQVIPDETDFPYTIRLVA 443

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 444 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 490

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      L+ AK    +++ 
Sbjct: 491 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALSQAKKARMEILN 549

Query: 233 LQKDVIS 239
                ++
Sbjct: 550 ELTSTLA 556



 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 90/233 (38%), Gaps = 28/233 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + +    ++K A G+ LV++GDT +L+ A          ++T    +T  Y     + 
Sbjct: 24  RPLEVEVGQLAKQANGAVLVRYGDTVVLSAAV----ASKEAKDTDFFPLTINYEEKMYAV 79

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G      +KRE   GR    +    R+I R +R +         Q+      ++ D    
Sbjct: 80  GKVPGGFIKRE---GRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVEQDCTPA 136

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ G+ +AL                     G +A +  G + G  +++    +    D
Sbjct: 137 MAAMLGSSLALS-------------ISDIPFDGPIAGVDVGRVNGEYVLNPTVEQAEQTD 183

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ++     T    I  V+  A+    S++     L    D I +L+  Q++V++
Sbjct: 184 IELTVAGTKKA-INMVESGAKE--VSEEDMLGALLFGFDAIQELVAFQEEVVA 233


>gi|33863644|ref|NP_895204.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9313]
 gi|81577177|sp|Q7V606|PNP_PROMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33635227|emb|CAE21552.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. MIT 9313]
          Length = 723

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 98/237 (41%), Gaps = 34/237 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           REI LT    +  A GS +++ GDT +L TAT     E +        +       G +P
Sbjct: 13  REIRLTTGRYAPQAGGSVMMECGDTAVLVTATRSTGREGIDFLPLICDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----ADG 123
              G+ ++RE   GR   R+  I R+I R +R +         QI+  C  +     AD 
Sbjct: 73  ---GSFMRRE---GRPPERATLIARLIDRPMRPLFPSWMRDDLQIVATCLSLDERVPAD- 125

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
                A+TGA +A                 S   +G +AA+  G+L    +++  Y E  
Sbjct: 126 ---VLAVTGASMATLLA-------------SIPFQGPMAAVRVGLLGDDFVLNPSYREIE 169

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             D+D     T  G +V V+  A +    Q      ++   + + +LIK Q+ ++ +
Sbjct: 170 RGDLDLVVAGTPDG-VVMVEAGANQ--LPQGDVIEAIDFGYEAVCELIKAQQTILKD 223



 Score = 98.6 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 91/247 (36%), Gaps = 29/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-----NTK 55
           R+ GR+ +++R IS    V  K   GS L + G T +L+TATL                +
Sbjct: 325 RVDGRKLDEVRPISSAAGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPGPE 384

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P S G      +   R+ G       +  RA+  V+         + + 
Sbjct: 385 KTYLH-HYNFPPYSVGETRPMRSPGRREVGHGS----LAERAIIPVLPPKDSFPYVLRVV 439

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V+ ++G T   ++ G+ +AL D                 LK  V+  + G++      
Sbjct: 440 SEVLSSNGSTSMGSVCGSTLALMDAGV-------------PLKAPVSGAAMGLIKEDAEI 486

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I  +Q   +            +N A+     ++
Sbjct: 487 RILTDIQGIEDFLGDMDFKVAGTKDG-ITALQMDMKITGLPVKTIAEAVNQARPARIHIL 545

Query: 232 KLQKDVI 238
           +   + I
Sbjct: 546 EKMLEAI 552


>gi|83855213|ref|ZP_00948743.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp.
           NAS-14.1]
 gi|83843056|gb|EAP82223.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp.
           NAS-14.1]
          Length = 711

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 27/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+ +++R+I     +     GS L   G+T  L   TL           +      
Sbjct: 318 RIDGRKTDEIRDIVAETGILPRTHGSSLFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+  S      I +  +
Sbjct: 378 NFMLHYNFPPYSVGEVGR----VGGPGRREIGHGKLAWRALQAVLPASTDFPYTIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           + +++G +  A++ G  +++ D                 LK  VA ++ G++        
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEEDGSYA 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T++G I  +Q   + A  + +     L  AK     ++ 
Sbjct: 481 ILSDILGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITPEIMEKALAQAKAGRVHILG 539

Query: 233 LQKDVISN 240
                IS 
Sbjct: 540 EMNKAISG 547



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 82/231 (35%), Gaps = 33/231 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70
           ++L    V++ A+GS +   G+T ++   T   +            +T  Y     +   
Sbjct: 16  LTLETGKVARQADGSVIATLGETSVMANVTFARQQKP---GQDFFPLTVHYQEKYYAAGK 72

Query: 71  --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++ C V+  D      
Sbjct: 73  VPGGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG--EDST 184
             A+  A  AL                    +G + A   G   G  +++      +D  
Sbjct: 128 MVAMIAASAALTISGA-------------PFRGPIGACRVGFEDGDYVLNPTVDDMQDLR 174

Query: 185 IDVD--ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           ++ D   + V+  +   V +  S E    S++     +  A ++I  +I L
Sbjct: 175 LNPDQRLDLVVAGTKEAVMMVES-EAYELSEEEMLGAVKFAHEQIQPVIDL 224


>gi|49473865|ref|YP_031907.1| polynucleotide phosphorylase/polyadenylase [Bartonella quintana
           str. Toulouse]
 gi|81647260|sp|Q6G0P7|PNP_BARQU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|49239368|emb|CAF25701.1| Polyribonucleotide nucleotidyltransferase [Bartonella quintana str.
           Toulouse]
          Length = 733

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR  + +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 317 RIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++         I    +
Sbjct: 377 TFLLHYNFPPFSVGETGR----LGSPGRREIGHGKLAWRAIHPMLPTKESFPYTIRAVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  + +G   AI         + D+
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLVRPIAGIAMGLIKEGERFAI---------LSDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   +    +++     L  A+D    ++      
Sbjct: 484 LGDEDHLGDMDFKVAGTNNG-ITALQMDIKIDGITEEIMKIALEQARDGRIHILNEMAKA 542

Query: 238 ISN 240
           +++
Sbjct: 543 LTS 545



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 73/222 (32%), Gaps = 31/222 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R ++L    +++ A+G+ +  +G+T +L T       +     +     +       G +
Sbjct: 14  RPLTLETGKIARQADGAVIATYGETIVLATVVSAKNPKPDQDFFPLTVNYQEKFYAVGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G  +KRE+   R       I R+I R +R +         Q+I+   VIQ D    
Sbjct: 74  P---GGYLKRES---RPTESETLISRLIDRPIRPLFADGYKNDTQVIVS--VIQYDLENN 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  +  AL                     G +A    G      I++    E   
Sbjct: 126 PDILAMIASSAAL-------------TLSGVPFMGPIAGARVGYCNKQYILNPHIDEMPE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             +D     T+S  ++     +E     +D     +      
Sbjct: 173 SKLDLVVAGTESAVLMV---ESEAQELPEDIMLGAVMFGHKG 211


>gi|325279004|ref|YP_004251546.1| Polyribonucleotide nucleotidyltransferase [Odoribacter splanchnicus
           DSM 20712]
 gi|324310813|gb|ADY31366.1| Polyribonucleotide nucleotidyltransferase [Odoribacter splanchnicus
           DSM 20712]
          Length = 758

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 83/237 (35%), Gaps = 18/237 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +RL GR   Q+R I           GS +   G+T  L++ TL  K+   I +       
Sbjct: 316 VRLDGRTTEQIRPIWCEVGYLPGPHGSSIFTRGETQSLSSVTLGTKLDEKIIDEATIQGK 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG       V  R+ G       +  RAL+ ++         + +  
Sbjct: 376 ERFLLHYNFPPFSTGEAKASRGVGRREIGHG----NLALRALKRMIPEDF--PYTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           D+++++G +  A +    +AL D    M+       +  +     A  +        + D
Sbjct: 430 DILESNGSSSMATVCAGTLALMDAGVPMKKPVTGIAMGLITDKGCAKYAV-------LSD 482

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +   ED   D+D     T  G I   Q   +    S +     L  AK     ++ +
Sbjct: 483 ILGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSYEIMEQALEQAKRGRMHIMDI 538



 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 78/230 (33%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R I+L      K A+G+ ++K G+T LL T          V     +  +    A  G  
Sbjct: 14  RVITLETGKLAKQADGAVMLKMGNTMLLATVVSAQDAGPDVDFMPLSVDYKEKFASVGRF 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   +RE   G+       + R++ RALR +            +   +  AD    
Sbjct: 74  P---GGFTRRE---GKSSDYEILVSRLVDRALRPLFPDDYHAET--FVQVTLYSAD---- 121

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                    ++ D L  +   +          G ++ +    + G  +++         D
Sbjct: 122 -------EESMPDALAGLAASAALAVSDIPFHGPISEVRVARIQGEFVINPTASALKEAD 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T   +I+ V+G  E    S+      +  A   I +    Q++
Sbjct: 175 LDIMVGATYE-NIMMVEG--EMNEVSEKEMLDAIKFAHAAIKEQCVAQQE 221


>gi|289207914|ref|YP_003459980.1| polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp.
           K90mix]
 gi|288943545|gb|ADC71244.1| polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp.
           K90mix]
          Length = 695

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 95/248 (38%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R IS+   V     GS +   G+T  L  ATL    + +V   I   +  
Sbjct: 314 RIDGRDNKTVRPISVQTSVLPRTHGSAVFTRGETQALVVATLGTDRDAQVIDAIEGERRD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P  TG      +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 374 RFMLHYNFPPYCTGETGFVGSPKRREIGHG----RLAKRGVAAVMPKAEEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 LK  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PLKAPVAGIAMGLIKEGDRFAV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     L  A++    ++  
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTTNG-VTALQMDIKIDGITREIMEQALAQAREGRMHILGC 535

Query: 234 QKDVISNE 241
             +V+ + 
Sbjct: 536 MNEVLPSH 543



 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 59/187 (31%), Gaps = 24/187 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++     +++ A G+ LV   +T +L TA      E     +     +   T   G +P 
Sbjct: 14  VTFETGDIARQASGAVLVNMAETVVLVTAVARKEAEPGRDFFPLTVNYQERTYAAGKIP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +     R+I R +R +         QI+     I  D      
Sbjct: 73  --GGFFKRE---GRPNEKETLTSRLIDRPIRPLFPEGFKNETQIVATVMSINPDVDP--- 124

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
                     D    +   +          G + A   G   G  +++  Y      D+D
Sbjct: 125 ----------DIPALLGASAALALSGVPFAGPIGAARVGYRAGEYLLNPTYSALEDSDLD 174

Query: 189 ANFVMTD 195
                T+
Sbjct: 175 LVVAGTE 181


>gi|190575258|ref|YP_001973103.1| polynucleotide phosphorylase/polyadenylase [Stenotrophomonas
           maltophilia K279a]
 gi|226702693|sp|B2FN86|PNP_STRMK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|190013180|emb|CAQ46813.1| putative polyribonucleotide phosphorylase [Stenotrophomonas
           maltophilia K279a]
          Length = 702

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 89/235 (37%), Gaps = 28/235 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR  + +R I++   V     GS L   G+T  + T TL       + +   G   
Sbjct: 315 VRIDGRALDTVRPIAVKTGVLPRTHGSSLFTRGETQAIVTITLGTARDGQVIDAVAGEYK 374

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIID 115
                 Y   P S G   +      R+ G      R+  R + +V+  L A     I + 
Sbjct: 375 ENFLFHYNFPPFSVGECGRMMGPKRREIGHG----RLAKRGVLAVMPSLEAFP-YTIRVV 429

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            ++ +++G +  A++ G+ +AL D                 +K  VA I+ G++      
Sbjct: 430 SEITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEGERF 476

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             + D+   ED   D+D     T  G I  +Q   +    +++     L  AK  
Sbjct: 477 VVLSDILGDEDHLGDMDFKVAGTAEG-ISALQMDIKIEGITEEIMKQALQQAKAG 530



 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 76/230 (33%), Gaps = 31/230 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A G+ +VK  DT LL TA    +  E    +     +       G +P 
Sbjct: 15  VTLETGEVARQASGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI--QADGGTR 126
             G   KRE   GR   +   I R+I R +R +         QII     +    DG   
Sbjct: 74  --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNDVQIIATVMSLNPDVDG--- 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                       D    +   +          G + A   G   G  I++    E +   
Sbjct: 126 ------------DIPALIGASAALALAGTPFMGPIGAAKVGYKNGEYILNPTVSELADSQ 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           ++     T +  ++     +E A  S++     +      +  +I    +
Sbjct: 174 LELVVAGTSNAVLMV---ESEAALLSEEVMLGAVTFGHREMQKVINAINE 220


>gi|119628984|gb|EAX08579.1| exosome component 8, isoform CRA_a [Homo sapiens]
          Length = 316

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 87/257 (33%), Gaps = 26/257 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P        G++  
Sbjct: 64  RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPS-TDAPDKGYVVP 122

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL---GSRQIII-D 115
              + P  +         SG  G  +Q   + I   +    ++    L     + + +  
Sbjct: 123 NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLY 177

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
           CD+  +  DG    A       AL +             + + + K +    ++ H  A 
Sbjct: 178 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVAT 237

Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           S  +      IVD    E+         VM + G +  +         +       ++ A
Sbjct: 238 SFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGIG--LTGAKLQDCMSRA 295

Query: 224 KDRIADLIKLQKDVISN 240
             R  ++ KL  +VI +
Sbjct: 296 VTRHKEVKKLMDEVIKS 312


>gi|88860552|ref|ZP_01135190.1| polynucleotide phosphorylase [Pseudoalteromonas tunicata D2]
 gi|88817750|gb|EAR27567.1| polynucleotide phosphorylase [Pseudoalteromonas tunicata D2]
          Length = 709

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 93/246 (37%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR+ + +R + +   V     GS +   G+T  L TATL  +    +      T + 
Sbjct: 317 RIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDSQMLDALSGTSNS 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G       +  R +++V+         I +  +
Sbjct: 377 RFMLHYNFPPFCVGETGFVGSPKRREIGHG----NLAKRGIQAVMPSLTEFPYSIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL +                 +K  VA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGTSLALMNAGV-------------PVKASVAGIAMGLVKENENFVV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     LN AK     ++ +
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTSNG-ITALQMDIKIEGITREIMQIALNQAKAARLHILGV 538

Query: 234 QKDVIS 239
               IS
Sbjct: 539 MDQAIS 544



 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A+ + L   GDT +L T   +         +     +       G +P 
Sbjct: 15  VTLETGAIARQADAAVLASIGDTSVLITVVGKKEAAPGQDFFPLTVNYQERMYAAGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR       I R+I R +R +     +   Q+I        +      
Sbjct: 74  --GGFLKRE---GRPSDAETLIARLIDRPIRPLFPDGFVNEVQVIATVVSFNPEIQPDIV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G V A   G + G  +++    E     +D
Sbjct: 129 TLIGTSAALAISGI-------------PFNGPVGASRVGYINGQYVLNPSVKELEESQLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T++  ++     +E    S+D     +    +++  +I    +
Sbjct: 176 LVVAGTENAVLMV---ESEANILSEDVMLGAVMYGHEQMQSIITAVAE 220


>gi|325299313|ref|YP_004259230.1| Polyribonucleotide nucleotidyltransferase [Bacteroides salanitronis
           DSM 18170]
 gi|324318866|gb|ADY36757.1| Polyribonucleotide nucleotidyltransferase [Bacteroides salanitronis
           DSM 18170]
          Length = 729

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 94/250 (37%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           RL GR+ N++R I        Y  GS +   G+T  L+T TL    +EKV   + +    
Sbjct: 319 RLDGRKTNEIRPIWCEVSPLPYPHGSAIFTRGETQSLSTVTLGTKADEKVVDDVLDQHKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +         + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAG--YPYCVRVMSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGV-------------PIKNPVSGIAMGLIKNAGEDKY 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T +G I   Q   +    + D     L  AK+    ++
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKNG-ITATQMDIKCDGLTYDILEKALLQAKEGREYIL 538

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 539 GKLTECIAEP 548



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 86/240 (35%), Gaps = 27/240 (11%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWIT 60
             GR       I+L      K A+G+  ++ G+T LL T    ++ VP            
Sbjct: 12  PDGRT------ITLETGKLAKQADGAVTLRMGNTVLLATVCAAKDAVPGTDFMPLQVEYK 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y    R  G   KRE   G+         R++ RALR +   +      + ++  +  
Sbjct: 66  EKYSAFGRFPGGFTKRE---GKASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIILFS 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           V + D L  +   +          G ++ +    + G  ++D  + 
Sbjct: 121 ADG-----------VDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGKFVIDPTFE 169

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +    D+D     T   +I+ V+G  E    S+      L  A + I    K Q +++  
Sbjct: 170 QLEQADMDLMVAATYE-NIMMVEG--EMDEVSEQDLLEALKAAHEAIKVHCKAQMELMEE 226


>gi|254521573|ref|ZP_05133628.1| 3' exoribonuclease family, domain 2, protein [Stenotrophomonas sp.
           SKA14]
 gi|219719164|gb|EED37689.1| 3' exoribonuclease family, domain 2, protein [Stenotrophomonas sp.
           SKA14]
          Length = 702

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 89/235 (37%), Gaps = 28/235 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR  + +R I++   V     GS L   G+T  + T TL       + +   G   
Sbjct: 315 VRIDGRALDTVRPIAVKTGVLPRTHGSSLFTRGETQAIVTITLGTARDGQVIDAVAGEYK 374

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIID 115
                 Y   P S G   +      R+ G      R+  R + +V+  L A     I + 
Sbjct: 375 ENFLFHYNFPPFSVGECGRMMGPKRREIGHG----RLAKRGVLAVMPSLEAFP-YTIRVV 429

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            ++ +++G +  A++ G+ +AL D                 +K  VA I+ G++      
Sbjct: 430 SEITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEGERF 476

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             + D+   ED   D+D     T  G I  +Q   +    +++     L  AK  
Sbjct: 477 VVLSDILGDEDHLGDMDFKVAGTAEG-ISALQMDIKIEGITEEIMKQALQQAKAG 530



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 76/230 (33%), Gaps = 31/230 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A G+ +VK  DT LL TA    +  E    +     +       G +P 
Sbjct: 15  VTLETGEVARQASGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI--QADGGTR 126
             G   KRE   GR   +   I R+I R +R +         QII     +    DG   
Sbjct: 74  --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLNPDVDG--- 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                       D    +   +          G + A   G   G  I++    E +   
Sbjct: 126 ------------DIPALIGASAALALAGTPFMGPIGAAKVGYKNGEYILNPTVSELADSQ 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           ++     T +  ++     +E A  S++     +      +  +I    +
Sbjct: 174 LELVVAGTSNAVLMV---ESEAALLSEEVMLGAVTFGHREMQKVINAINE 220


>gi|15895084|ref|NP_348433.1| polynucleotide phosphorylase/polyadenylase [Clostridium
           acetobutylicum ATCC 824]
 gi|81530281|sp|Q97I45|PNP_CLOAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|15024781|gb|AAK79773.1|AE007689_11 Polyribonucleotide nucleotidyltransferase [Clostridium
           acetobutylicum ATCC 824]
 gi|325509222|gb|ADZ20858.1| polynucleotide phosphorylase/polyadenylase [Clostridium
           acetobutylicum EA 2018]
          Length = 703

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 93/241 (38%), Gaps = 20/241 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-----LEEKVPMWIRNTKH 56
           R  GR+ +++R IS    +     GS L   G T ++ T T      + +V   +   + 
Sbjct: 312 RPDGRRFDEIRPISCDVDLLPRTHGSGLFTRGLTQVM-TVTTLGPIGDAQVIDGLGVEES 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG        + R+ G       +  +AL  ++         I +  
Sbjct: 371 KRYMHHYNFPPYSTGEVKPLRGPNRREIGHG----ALAEKALVPLIPSEEEFPYTIRLVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ ++G T  A++ G+ +AL D    ++  +    +  +    ++  +        I D
Sbjct: 427 EVLSSNGSTSQASVCGSTLALMDAGVPIKRPAAGIAMGLITSEDLSKEAV-------ITD 479

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T+ G I  +Q   +    S+      +N A+   A L  L+K 
Sbjct: 480 IQGLEDFFGDMDFKVAGTEKG-ITAIQVDTKIHGLSKYCIKTAINDARK--ARLFILEKM 536

Query: 237 V 237
           V
Sbjct: 537 V 537



 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 83/234 (35%), Gaps = 27/234 (11%)

Query: 12  REISLTRRVSKYAEGSCL-VKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R++ +    +       + + +GDT ++          E +  +  + ++       G +
Sbjct: 12  RKLKVECGKTGMLSNCAMFISYGDTVVMVNVNASEKPREGIDFFPLSIEYEERQYSVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  VKRE   GR   +S    R I R LR +         Q++     ++ D    
Sbjct: 72  P---GGFVKRE---GRPSEKSILHARAIDRPLRPLFPKGYRNDVQVVCTVMSVEQDNLPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA +AL                       VA +S G + G  +++    E     
Sbjct: 126 ILAMNGASMALC-------------LSDIPFTTPVATVSVGCIDGKFVLNPTLEEREKSS 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +D     T+   ++ ++  A+     +D   A ++   +   D++  Q+  +  
Sbjct: 173 LDLTVCATNE-RVMMLEAGADEIP--EDLMIAAIDFGFNACQDIVAFQEKAMKE 223


>gi|332886043|gb|EGK06287.1| polyribonucleotide nucleotidyltransferase [Dysgonomonas mossii DSM
           22836]
          Length = 723

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 54/235 (22%), Positives = 88/235 (37%), Gaps = 30/235 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           RL GR   ++R I         A GS +   G+T  LTT T    L+EK+   + N    
Sbjct: 319 RLDGRTTTEIRPIWSEVDYLPGAHGSAVFTRGETQSLTTVTLGTKLDEKIIDDVLNNGKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG+   +  V  R+ G       +  RAL+ ++         I +  D
Sbjct: 379 RFLLHYNFPPFSTGDARPQRGVGRREIGHG----NLAHRALKPMIPSD--YPYVIRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           +++++G +  A +    +AL D                 +K  V  I+ G++        
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVTGIAMGLISEKKGTNF 479

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             + D+   ED   D+D     T  G I   Q   +    S +     LN A++ 
Sbjct: 480 AVLSDILGDEDHLGDMDFKVCGTKDG-ITATQMDIKVDGLSYEILEKALNQAREG 533



 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R I++      K A+GS +V+ G+T LL T          V       ++    A YG  
Sbjct: 15  RTITIETGKLAKQADGSVMVRMGNTMLLATVCAAKDANPGVDFMPLQVEYKEKFAAYGRF 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   +RE   GR       + R++ RALR +         ++ ++  +  +DG   
Sbjct: 75  P---GGFQRRE---GRASDYEILVCRLVDRALRPLFPDD--YHAEVFVNVTLFSSDG--- 123

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                     + D L  +   +          G ++ +    + G  I++  + + +  D
Sbjct: 124 --------EDMPDALAGLAASAALAVSDIPFNGPISEVRVARVDGQFILNPTFSQLAKAD 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D   V     +I+ V+G  E    S+      +  A + I    + Q +
Sbjct: 176 MDI-MVGATIDNIMMVEG--EMKEVSEVEMLEAIKFAHEAIKVQCQAQIE 222


>gi|304387933|ref|ZP_07370106.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           ATCC 13091]
 gi|304338030|gb|EFM04167.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           ATCC 13091]
          Length = 706

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|187610328|sp|A1KT19|PNP_NEIMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|308388946|gb|ADO31266.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
           meningitidis alpha710]
 gi|325132007|gb|EGC54706.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M6190]
 gi|325137838|gb|EGC60413.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           ES14902]
          Length = 706

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|156311439|ref|XP_001617784.1| hypothetical protein NEMVEDRAFT_v1g47702 [Nematostella vectensis]
 gi|156195791|gb|EDO25684.1| predicted protein [Nematostella vectensis]
          Length = 443

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 85/244 (34%), Gaps = 20/244 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           RL GR+  ++R I           GS +   G+T  L T TL    E             
Sbjct: 215 RLDGRKTTEIRPIWCEVDYLPSTHGSAIFTRGETQALATVTLGTSREANQIDLPSEQGEE 274

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG        S R+ G       +  RAL++++         + +  +
Sbjct: 275 TFYLHYNFPPFSTGEARPLRGTSRREVGHG----NLAQRALKNMIPAD--CPYTVRVVSE 328

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V++++G +  A +    +A+ D    M    +   +  +  G+  A+         + D+
Sbjct: 329 VLESNGSSSMATVCSGTLAMMDAGIQMIKPVSGIAMGLITDGNNFAV---------LSDI 379

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I   Q   +      D     L+ A++    ++    + 
Sbjct: 380 LGDEDHLGDMDFKVTGTADG-ITACQMDIKIDGLRYDIMEQALSQAREGRLHILGKLVET 438

Query: 238 ISNE 241
           ++  
Sbjct: 439 LAQP 442


>gi|121634554|ref|YP_974799.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
           FAM18]
 gi|120866260|emb|CAM10001.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
           meningitidis FAM18]
          Length = 711

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 321 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 380

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 381 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 436

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 437 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 487

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 488 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 546

Query: 238 ISNE 241
           ++  
Sbjct: 547 VAGP 550



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 21  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 79

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 80  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 134

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 135 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 181

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 182 LVVAGTSKAVLM 193


>gi|85542918|sp|Q5RCW2|PNPT1_PONAB RecName: Full=Polyribonucleotide nucleotidyltransferase 1,
           mitochondrial; AltName: Full=Polynucleotide
           phosphorylase 1; Short=PNPase 1; Flags: Precursor
          Length = 783

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 19/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R +S    + K   GS L + G T +L T T +        ++V   I  
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 417

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   ++ R+ G       +  +AL  V+         I 
Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHG----ALAEKALYPVIPRDF--PFTIR 471

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  V K        G +  Y 
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEK---GEIEDYR 528

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T+ G I  +Q   +            +  A     ++++
Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587

Query: 233 LQKDVISNE 241
           +    IS  
Sbjct: 588 IMNKTISKP 596



 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 27/203 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R++ ++     ++A+GS +V+ GDT ++ TA   T             +    A  G +P
Sbjct: 54  RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
               N ++RE  +     +     R+I R++R +         Q++  C+++  DG    
Sbjct: 114 ---TNYLRREIGT---SDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNEP 165

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI GA VAL                     G V A+  G++ G  +V+    E S+ 
Sbjct: 166 DVLAINGASVALS-------------LSDIPWNGPVGAVRIGIIDGECVVNPTRKEMSSS 212

Query: 186 DVDANFVMTDSGHIVEVQGSAER 208
            ++          IV ++ SAE 
Sbjct: 213 TLNLVVAGAPKSQIVMLEASAEN 235


>gi|296125683|ref|YP_003632935.1| polyribonucleotide nucleotidyltransferase [Brachyspira murdochii
           DSM 12563]
 gi|296017499|gb|ADG70736.1| polyribonucleotide nucleotidyltransferase [Brachyspira murdochii
           DSM 12563]
          Length = 716

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 83/245 (33%), Gaps = 20/245 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           MR  GR  +++R IS    +     GS L   G T  L+  TL  +    + +  +G   
Sbjct: 312 MRPDGRALDEIRPISTMINLIPRVHGSALFTRGQTQCLSIVTLGSEKDAQLMDDIYGKEN 371

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R      +  R+  +V+         + +  
Sbjct: 372 KTFMLHYNFPPFSVGEVGR----YGAPGRREIGHGNLAERSFNAVLPSKEKFPYTVRVVA 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175
           ++++++G +  A I  + ++L      +        +                 GY I+ 
Sbjct: 428 EILESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGL----------ATYKDGYKILT 477

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T  G I   Q   +    S       L  AK     ++ +  
Sbjct: 478 DIQGVEDHLGDMDFKVAGTRKG-ITAFQLDIKLTGISAQILKEALEQAKKARYFILDIID 536

Query: 236 DVISN 240
             ISN
Sbjct: 537 STISN 541



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 83/227 (36%), Gaps = 27/227 (11%)

Query: 16  LTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG--- 71
           L   +  K A GS  ++ G+T +L T  +  K P     +    +T  Y     + G   
Sbjct: 15  LETGLLAKQAHGSVTLRLGNTTILATV-VAAKEPN--LESDFFPLTVNYNEKYYAGGKIP 71

Query: 72  -NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
               KREA   +   +   I R+I R LR +         QII     +  D  T     
Sbjct: 72  GGFFKREA---KPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDMPT----- 123

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
                   D L  +   +          G VAA+  G   G  I++    E  + ++D  
Sbjct: 124 --------DALALIASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELPSSELDI- 174

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            V      I+ ++G A+    S++ F   + LA   +   I +Q ++
Sbjct: 175 IVAGSKDAILMIEGEAKE--VSEEVFIGAIELAHKEMQKYIDMQNEM 219


>gi|325144204|gb|EGC66511.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M01-240013]
 gi|325206400|gb|ADZ01853.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M04-240196]
          Length = 706

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|325127858|gb|EGC50764.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           N1568]
          Length = 706

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|83313216|ref|YP_423480.1| polynucleotide phosphorylase/polyadenylase [Magnetospirillum
           magneticum AMB-1]
 gi|123754041|sp|Q2VZQ4|PNP_MAGMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|82948057|dbj|BAE52921.1| Polyribonucleotide nucleotidyltransferase [Magnetospirillum
           magneticum AMB-1]
          Length = 720

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 86/230 (37%), Gaps = 18/230 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR    +R I +   V   A GS L   G+T  L  ATL       I +   G   
Sbjct: 315 VRIDGRDTKTVRAIEVEVGVLPRAHGSALFTRGETQALVVATLGTGQDEQIIDQLAGEYR 374

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R     ++  RA+R  +         + +  
Sbjct: 375 EHFMLHYNFPPYSVGEAGR----MGSPGRREIGHGKLAWRAMRPCLPAKESFPYTMRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++ +++G +  A++ G+ +AL D    +        +  + +G   A+         + D
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGVPLPKPVAGIAMGLIKEGTDFAV---------LSD 481

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           +   ED   D+D     T  G +  +Q   +  + +++     L  AKD 
Sbjct: 482 ILGDEDHLGDMDFKVAGTVDG-VTALQMDIKITSITEEIMKIALGQAKDG 530



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 87/238 (36%), Gaps = 42/238 (17%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R++ L    V++ A+G+ +V +G+T +L T                  +T  Y     + 
Sbjct: 16  RKLVLETGKVARQADGAVMVTYGETSVLCTVVG---AKSQKPGIDFFPLTVNYQEKAFAA 72

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           G       KRE   GR   +   + R+I R +R +         Q++  C V+  D    
Sbjct: 73  GKIPGGFFKRE---GRPSEKETLVSRLIDRPIRPLFADGFRNEVQVV--CTVLSHDLEND 127

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
              AA+ G   AL                     G V A   G + G  +++   G+   
Sbjct: 128 PDIAALVGTSAAL-------------TISGLPFMGPVGAARVGYVDGAYVLNPLVGDLPK 174

Query: 185 IDVDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAM----LNLAKDRIAD 229
            ++D     T  G ++ V+  A++ +         F    F A+    ++LA++   D
Sbjct: 175 SELDLVVAGTVEG-VLMVESEAKQLSEDVMLGAVMFGHREFQAVIQAIIDLAEECAKD 231


>gi|325203845|gb|ADY99298.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           M01-240355]
          Length = 706

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|194220716|ref|XP_001496138.2| PREDICTED: similar to Polyribonucleotide nucleotidyltransferase 1,
           mitochondrial precursor (PNPase 1) (Polynucleotide
           phosphorylase-like protein) (PNPase old-35) (3-5 RNA
           exonuclease OLD35) [Equus caballus]
          Length = 784

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 19/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R I+    + K   GS L + G T +L T T +        +++   I  
Sbjct: 358 RCDGRDLTSLRNINCEVDMFKILHGSALFQRGQTQVLCTVTFDSLESSIKSDRIITAING 417

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
                    Y   P +T    K   V+ R+ G       +  +AL  V+         I 
Sbjct: 418 VNDKNFMLHYEFPPYATNEIGKVTGVNRRELGHG----ALAEKALYPVIPKDF--PFTIR 471

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  V K +      G +  Y 
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISTAVAGVAIGLVTKNNP---DKGEIEDYR 528

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T+ G I  +Q   +            +  A     ++++
Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587

Query: 233 LQKDVISNE 241
           +    IS  
Sbjct: 588 IMNKTISKP 596



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 84/202 (41%), Gaps = 25/202 (12%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R++ ++     ++A+GS +V+ GDT ++ TA  + K       ++   +  +Y     + 
Sbjct: 54  RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSP----SQFLPLVVDYRQKAAAA 109

Query: 71  GNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126
           G R+    +    G   +EI   R+I R++R +         Q++  C+++  DG     
Sbjct: 110 G-RIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNEPD 166

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI GA VAL                     G V A+  GM+ G  +V+    E S+  
Sbjct: 167 VLAINGASVALS-------------LSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSST 213

Query: 187 VDANFVMTDSGHIVEVQGSAER 208
           ++          IV ++ SAE 
Sbjct: 214 LNLVVAGAPKSQIVMLEASAEN 235


>gi|114577443|ref|XP_515490.2| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial [Pan troglodytes]
          Length = 783

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 19/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R +S    + K   GS L + G T +L T T +        ++V   I  
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 417

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   ++ R+ G       +  +AL  V+         I 
Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHG----ALAEKALYPVIPRDF--PFTIR 471

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  V K        G +  Y 
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEK---GEIEDYR 528

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T+ G I  +Q   +            +  A     ++++
Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587

Query: 233 LQKDVISNE 241
           +    IS  
Sbjct: 588 IMNKTISKP 596



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 27/203 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R++ ++     ++A+GS +V+ GDT ++ TA   T             +    A  G +P
Sbjct: 54  RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
               N ++RE  +     +     R+I R++R +         Q++  C+++  DG    
Sbjct: 114 ---TNYLRREIGT---SDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNEP 165

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI GA VAL                     G V A+  G++ G  +V+    E S+ 
Sbjct: 166 DVLAINGASVALS-------------LSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSS 212

Query: 186 DVDANFVMTDSGHIVEVQGSAER 208
            ++          IV ++ SAE 
Sbjct: 213 TLNLVVAGAPKSQIVMLEASAEN 235


>gi|332827644|gb|EGK00386.1| polyribonucleotide nucleotidyltransferase [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 720

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 54/235 (22%), Positives = 89/235 (37%), Gaps = 30/235 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           RL GR   ++R I         A GS +   G+T  LTT T    L+EK+   + N    
Sbjct: 318 RLDGRSTTEIRPIWSEVDYLPGAHGSAIFTRGETQSLTTVTLGTKLDEKIIDDVLNNGKE 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG+   +  V  R+ G       +  RAL+ ++  +      I +  D
Sbjct: 378 RFLLHYNFPPFSTGDARPQRGVGRREIGHG----NLAHRALKPMIPAN--YPYVIRVVSD 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           +++++G +  A +    +AL D                 +K  V  I+ G++        
Sbjct: 432 ILESNGSSSMATVCAGTLALMDAGVQ-------------IKKPVTGIAMGLISEKKGTNF 478

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             + D+   ED   D+D     T  G I   Q   +    S +     LN A++ 
Sbjct: 479 AVLSDILGDEDHLGDMDFKVCGTKDG-ITATQMDIKVDGLSYEILEKALNQAREG 532



 Score = 88.2 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 88/230 (38%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R I+L      K A+GS +++ G+T +L T       +  V       ++    A +G  
Sbjct: 14  RTITLETGKLAKQADGSVMLRMGNTMMLATVCAAKDAKPDVDFMPLQVEYKEKFAAFGRF 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  ++RE   GR       + R++ RALR +         ++ ++  +  +DG   
Sbjct: 74  P---GGFLRRE---GRASDYEILVCRLVDRALRPLFPDD--YHAEVFVNVTLFSSDG--- 122

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                   + + D L  +   +          G ++ +    + G  I++  + +    D
Sbjct: 123 --------IDMPDALAGLAASAALAVSDVPFNGPISEVRVARVDGQFILNPTFAQVEQAD 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D   V     +I+ V+G  E    S+      + +A + I    + Q +
Sbjct: 175 MDI-MVGATIDNIMMVEG--EFKEVSEAEMLEAIKVAHEAIKIQCQAQIE 221


>gi|330877224|gb|EGH11373.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 630

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 18/229 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 245 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 304

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R++++++  + +    I +  +
Sbjct: 305 PFMLHYNFPPFSVGE-CGRMGGAGR---REIGHGRLARRSVQAMLPGADVFPYTIRVVSE 360

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    M+       +  V +G   AI         + D+
Sbjct: 361 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAI---------LTDI 411

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
              ED   D+D     T  G +  +Q   +    +++     L  A + 
Sbjct: 412 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 459



 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 49/167 (29%), Gaps = 20/167 (11%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR   +     R+I R +R +     +   Q++              AA+
Sbjct: 4   GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAM 60

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDVDA 189
            G   AL                     G V A           +++  Y +     +D 
Sbjct: 61  IGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDM 107

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
               T    ++     +E    ++D     +  A D    +I   K+
Sbjct: 108 VVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 151


>gi|310641602|ref|YP_003946360.1| polynucleotide phosphorylase/polyadenylase [Paenibacillus polymyxa
           SC2]
 gi|309246552|gb|ADO56119.1| Polynucleotide phosphorylase/polyadenylase [Paenibacillus polymyxa
           SC2]
          Length = 700

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 89/249 (35%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R I     +     GS L   G T  L   T  A  + ++   I   + 
Sbjct: 313 VRPDGRKLDEIRPIESDTSILPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGIDLEET 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      A   R+ G       +  RAL  V+         I +  
Sbjct: 373 KRFMHHYNFPPFSVGEARPLRAPGRREIGHG----ALGERALSKVIPSETEFPYTIRLVS 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA ++ G++       
Sbjct: 429 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGVAMGLIKDGDHVS 475

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +     ++     L  A++    ++ 
Sbjct: 476 VLTDIQGMEDHLGDMDFKVAGTAEG-VTAIQMDIKIDGIDRNILQDALKQAREGRLFILG 534

Query: 233 LQKDVISNE 241
              + I   
Sbjct: 535 KMMEAIQKP 543



 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 83/227 (36%), Gaps = 28/227 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R++ L    ++K A  +  V +G+T +L T T   +     ++     +T  Y     + 
Sbjct: 12  RKLVLETGRLAKQANAAVKVSYGETVVLCTVTASRE----PKDLDFFPLTVNYEERLYAV 67

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G      +KRE   GR   ++    R+  R +R +         Q++     +  D    
Sbjct: 68  GKIPGGFIKRE---GRPSQKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEPE 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ G   AL                     G +  ++ G + G  +++ D  + +T D
Sbjct: 125 IAAMIGTSAALS-------------ISDVPFNGPIGGVAVGRVNGQFVINPDIAQQNTSD 171

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +      T    I+ V+  AE     ++     +    D I +++ +
Sbjct: 172 LYLVVAGTKDA-IMMVE--AEGDEIPEEVMLEAIMFGHDEIKNIVAV 215


>gi|291287262|ref|YP_003504078.1| polyribonucleotide nucleotidyltransferase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884422|gb|ADD68122.1| polyribonucleotide nucleotidyltransferase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 711

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 85/234 (36%), Gaps = 27/234 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57
           R+ GR    +R+I +  R+   A GS L   G+T  L  ATL  K    I          
Sbjct: 320 RIDGRSYTDIRDIDIETRLLPMAHGSGLFTRGETQALVVATLGTKTDTQILDTIYGDGKK 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G       + G  G R      +  R+L  V+  +      I I  +
Sbjct: 380 RFMLHYNFPPFCVGE---VGFLRG-PGRREIGHGALAERSLAQVLPDADDFPYTIRIVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-----Y 172
           V++++G +  A + G  +AL D                 +K  VA ++ G++        
Sbjct: 436 VLESNGSSSMATVCGGCLALMDAGV-------------PIKSPVAGVAMGLIYEGADRFA 482

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED   D+D     T  G I  +Q   +    SQ+     L  AK+ 
Sbjct: 483 VLSDILGTEDHLGDMDFKVTGTKDG-ITALQMDIKIEGLSQELLETALGQAKEA 535



 Score = 93.2 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 80/231 (34%), Gaps = 31/231 (13%)

Query: 16  LTRRV-SKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRST 70
                 +K A GS  +K G T +L TA  +    E    +     +       G +P   
Sbjct: 21  FETGWKAKQANGSIWMKQGGTVVLVTAAGKKTASENQGFFPLTVNYIEKFYAAGKIP--- 77

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTA 128
           G   KREA   +         R+I R LR +         Q+I    V+  DG       
Sbjct: 78  GGFFKREA---KPTDNETLTSRLIDRPLRPMFPDGFRNETQVIA--HVVSYDGVNSPDML 132

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G +A +  G L G  I++     D   ++D
Sbjct: 133 AMNGASAAL-------------MISDIPFNGPIAGVRVGRLDGKLIINPPA--DRLEELD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            N ++  +   + +  +   +  S+      L    D I  L+  Q ++++
Sbjct: 178 MNIILAGTDDAIVMVEAGM-SVVSEAEVIEALQFGHDNIKKLVAKQNEMVA 227


>gi|168698769|ref|ZP_02731046.1| polynucleotide phosphorylase/polyadenylase [Gemmata obscuriglobus
           UQM 2246]
          Length = 749

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 97/247 (39%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR   ++R +     V     G+ L + G+T  L  ATL     E+KV   +++   
Sbjct: 317 RIDGRAPKELRALGAEVTVLPRTHGTALFQRGETQALVVATLGTVADEQKVDG-LQDEYS 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G      A   R+ G       +  R+L++V+   +     I +  
Sbjct: 376 KKFFLDYNFPPYSVGECKPIRAPGRREIGHGM----LAERSLKAVIPPPSRFPYTIRLVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++++++G +  A++ G  +AL D                 +K  VA IS G++       
Sbjct: 432 EILESNGSSSMASVCGGTLALMDAGV-------------PIKRPVAGISVGLVMEKDHFS 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  VQ   +    ++      L  AK+    ++K
Sbjct: 479 LLTDIQGDEDHYGDMDFKVAGTQKG-VTGVQLDIKVDGINEAIVRGALEQAKEARLQILK 537

Query: 233 LQKDVIS 239
                +S
Sbjct: 538 TMLSALS 544



 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 77/228 (33%), Gaps = 30/228 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67
           R + L     +K A G+ LV +G+T +L  A     +P    +    ++   T   G  P
Sbjct: 15  RTLVLETGKFAKQAHGAVLVTYGETSVLVAAVEGSPIPGRDFFPLQVEYRERTYAAGKFP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125
              G  +KRE    R   +     R+I R  R +   +     QI   C VI +D     
Sbjct: 75  ---GGFIKRET---RPSTKETLTSRLIDRPSRPLFPANYFNEVQIH--CTVISSDRENDA 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              A+ G   ALH                         +  G + G  +V     +    
Sbjct: 127 DMLALIGTSAALH-------------VSHIPFLKPYGGLRLGRVNGELVVLPTVTQMEES 173

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           D+D     T    +  ++G A      ++     +  A  + A LI L
Sbjct: 174 DLDLIVAATRDA-VCMIEGFARE--MPENEMGDAIMEAHKQCAVLIDL 218


>gi|16124290|ref|NP_418854.1| polynucleotide phosphorylase/polyadenylase [Caulobacter crescentus
           CB15]
 gi|221232972|ref|YP_002515408.1| polynucleotide phosphorylase/polyadenylase [Caulobacter crescentus
           NA1000]
 gi|81536356|sp|Q9AC32|PNP_CAUCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782712|sp|B8GWZ0|PNP_CAUCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|13421126|gb|AAK22022.1| polyribonucleotide nucleotidyltransferase [Caulobacter crescentus
           CB15]
 gi|220962144|gb|ACL93500.1| polyribonucleotide nucleotidyltransferase/polynucleotide
           adenylyltransferase [Caulobacter crescentus NA1000]
          Length = 712

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 20/243 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           +R+ GR    +R I     +     GS L   G+T  +  ATL         +   G   
Sbjct: 316 LRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYK 375

Query: 58  -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R     ++  RALR ++         I +  
Sbjct: 376 ESFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRALRPMLPTKEDFPYTIRLVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175
           ++ +++G +  A + G+ +A+ D    +    +   +  +L+            G+ ++ 
Sbjct: 432 EITESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAMGLILEQ----------DGFAVLS 481

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T  G +  +Q   + A  +       L  AK+  A ++    
Sbjct: 482 DILGDEDHLGDMDFKVAGTSEG-LTSLQMDIKIAGITPAIMEQALAQAKEGRAHILGEMN 540

Query: 236 DVI 238
             +
Sbjct: 541 KAM 543



 Score = 85.1 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 77/233 (33%), Gaps = 40/233 (17%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG--- 71
           L    +++ A+G+ L   G+T +L TA                 +T  Y     + G   
Sbjct: 18  LETGRIARQADGAVLATMGETVVLATAVF---AKSQKPGQDFFPLTVNYQEKTFAAGKIP 74

Query: 72  -NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTRTA 128
               KRE   GR   +   + R+I R +R +         Q+++   V+Q D        
Sbjct: 75  GGFFKRE---GRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVT--VLQHDLENDPDIL 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            +  A  AL                     G + A   G + G  +++    E     +D
Sbjct: 130 GMVAASAALCLSGA-------------PFMGPIGAARVGWVDGAYVLNPTLDEMKESKMD 176

Query: 189 ANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAM----LNLAKDRIAD 229
                T    ++   E+Q  +E        F+     A+    ++LA+    +
Sbjct: 177 LVVAGTADAVMMVESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAKE 229


>gi|325140088|gb|EGC62617.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           CU385]
          Length = 706

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 483 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 541

Query: 238 ISNE 241
           ++  
Sbjct: 542 VAGP 545



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 130 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 176

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 177 LVVAGTSKAVLM 188


>gi|33866429|ref|NP_897988.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp. WH
           8102]
 gi|81574045|sp|Q7U515|PNP_SYNPX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33633207|emb|CAE08412.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           8102]
          Length = 721

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 90/237 (37%), Gaps = 34/237 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           REI LT    +  A GS LV+ GDT +L TAT     E +        +       G +P
Sbjct: 13  REIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSGGREGIDFLPLICDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----ADG 123
            S   R       GR   R+    R+I R +R +         Q++  C  +     AD 
Sbjct: 73  GSYQRR------EGRPPERATLTARLIDRPMRPLFPAWLRDDLQVVATCLSLDERVPAD- 125

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
                A+TGA +A                      G +AA+  G+L    +++  Y E  
Sbjct: 126 ---VLAVTGASIATLLAGI-------------PFNGPMAAVRVGLLGDDFVLNPSYREIE 169

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             D+D     T  G +V V+    +    +      ++   + I +LIK Q+ ++ +
Sbjct: 170 RGDLDLIVAGTPDG-VVMVEAGGNQ--LPEQDVIEAIDFGYEAICELIKAQEQLLKD 223



 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 93/247 (37%), Gaps = 29/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----TK 55
           R+ GR  +++R IS    V  +   GS L + G T +L+TATL         +     T+
Sbjct: 323 RVDGRALDEVRAISALAGVLPRRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLHPSTE 382

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P S G      +   R+ G       +  RA+  V+         + + 
Sbjct: 383 KLYLH-HYNFPPYSVGETRPMRSPGRREIGHG----ALAERAILPVLPAKDTFPYVVRVV 437

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V+ ++G T   ++ G+ ++L D                 LK  V+  + G++      
Sbjct: 438 SEVLSSNGSTSMGSVCGSTLSLMDAGV-------------PLKAPVSGAAMGLIKEGDDI 484

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     ++ G I  +Q   +            +N A+     ++
Sbjct: 485 RILTDIQGIEDFLGDMDFKVAGSEKG-ITALQMDMKITGLPVKTIAEAINQARPARLHIL 543

Query: 232 KLQKDVI 238
           +   + I
Sbjct: 544 EKMLEAI 550


>gi|149730159|ref|XP_001495596.1| PREDICTED: similar to Exosome complex exonuclease RRP43 (Ribosomal
           RNA-processing protein 43) (Exosome component 8) (p9)
           (Opa-interacting protein 2) [Equus caballus]
          Length = 276

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 88/257 (34%), Gaps = 25/257 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P        G++  
Sbjct: 23  RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEFAAPP-TDAPDKGYVVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115
              + P  +         SG  G  +Q   + I   +    ++    L    G    ++ 
Sbjct: 82  NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLAWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
           CD+  +  DG    A       AL +             + + + K +    ++ H  A 
Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEVTISEETALAEVNLKKKSFLNIRTHPVAT 196

Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           S  +      IVD    E+         VM + G +  +      +  +       ++ A
Sbjct: 197 SFAVFDDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255

Query: 224 KDRIADLIKLQKDVISN 240
             R  ++ KL  +V+ +
Sbjct: 256 VTRHKEVKKLMDEVVKS 272


>gi|226356846|ref|YP_002786586.1| polynucleotide phosphorylase/polyadenylase [Deinococcus deserti
           VCD115]
 gi|257096684|sp|C1CXB5|PNP_DEIDV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226318836|gb|ACO46832.1| putative polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) [Deinococcus deserti VCD115]
          Length = 721

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 95/249 (38%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +R  GR    +R I +  R    A GS +   G+T +L  ATL  +    + +      +
Sbjct: 318 LRADGRNGRAVRPIWIEARPLPRAHGSAIFTRGETQVLGVATLGTERDEILVDDLTTEDN 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +    S R+ G       +  RA+R+V+         I +  
Sbjct: 378 DKFMLHYNFPPYSTGEVKRMGGQSRREIGHGH----LAKRAIRAVLPSFEEFPYVIRLVG 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A +    +AL D                 +K  VA ++ G++       
Sbjct: 434 EVLESNGSSSMATVCAGVLALMDAGV-------------PIKAPVAGVAMGLVMEGDKYR 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G +  +Q   +    +       L  A++    ++ 
Sbjct: 481 VLTDILGLEDALGDMDFKVCGTAEG-VTALQMDIKVGGITPQVMREALAQAREGRLHILG 539

Query: 233 LQKDVISNE 241
              +V+S+ 
Sbjct: 540 KMAEVLSSP 548



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 86/238 (36%), Gaps = 31/238 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           RE+S+    ++K   GS  +++GDT LL TA   E+            +T E+     + 
Sbjct: 13  RELSIETGRLAKLVSGSVTLRYGDTMLLVTAQAREEKSPLDFLP----LTVEFEERHYAV 68

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G    +  +RE   GR G ++    R+  R LR +         Q+II            
Sbjct: 69  GKIPGSFHRRE---GRPGEKAILSARITDRQLRPLFPKGYRHETQVIITVLSADQQNAPD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                GA  AL                     G  A +  G + G  IV+    + +   
Sbjct: 126 VLGPIGASAALS-------------ISDIPWGGPTACVRVGQVDGQFIVNPTADQLTRSR 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA---KDRIADLIKLQKDVISNE 241
           +D     T    ++ V+  A+  T S++   + +  A      + DLI+  +  +  E
Sbjct: 173 MDLVVAGTRDA-VMMVEAGAQ--TVSEEDLVSAIEFAHAEMQGVIDLIERMRAEVGQE 227


>gi|153806044|ref|ZP_01958712.1| hypothetical protein BACCAC_00295 [Bacteroides caccae ATCC 43185]
 gi|149130721|gb|EDM21927.1| hypothetical protein BACCAC_00295 [Bacteroides caccae ATCC 43185]
          Length = 708

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 91/250 (36%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           RL GR+  ++R I           GS +   G+T  LT+ T    L+EK+   +      
Sbjct: 319 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDNVLEHGKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +         + +  +
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNAGEDKY 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     LN AK+    ++
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHIL 538

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 539 DKIAETIAEP 548



 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 34/245 (13%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHG 57
             GR       I+L      K A+GS +++ G+T LL T    ++ VP         ++ 
Sbjct: 12  PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
              A +G  P   G   KRE   GR         R++ RALR +   +     ++ ++  
Sbjct: 66  EKFAAFGRFP---GGFTKRE---GRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNII 117

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +  ADG           V + D L  +   +          G ++ +    + G  +++ 
Sbjct: 118 LFSADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINP 166

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            + +    D+D     T   +I+ V+G  E    S+      + +A + I    K Q + 
Sbjct: 167 TFEQLEKADMDLMVAATYE-NIMMVEG--EMHEVSEAELLEAMKVAHEAIKVHCKAQME- 222

Query: 238 ISNEV 242
           ++ EV
Sbjct: 223 LTEEV 227


>gi|119470827|ref|ZP_01613438.1| polynucleotide phosphorylase, has polyadenylase activity; part of
           the degradosome [Alteromonadales bacterium TW-7]
 gi|119446054|gb|EAW27333.1| polynucleotide phosphorylase, has polyadenylase activity; part of
           the degradosome [Alteromonadales bacterium TW-7]
          Length = 708

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 93/246 (37%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+ + +R + +   V     GS +   G+T  L TATL  +        +  T   
Sbjct: 317 RIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDSQLIDDLTGTHKN 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G       +  R +++V+         I +  +
Sbjct: 377 HFMLNYNFPPFCVGETGFVGSPKRREIGHG----NLAKRGIQAVMPTLTDFPYSIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL +                 +K  VA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGTSLALMNAGV-------------PIKASVAGIAMGLVKEDEKFVV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +Q+     L  AK     ++++
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTTNG-ITALQMDIKIEGITQEIMQIALKQAKAARLHILEV 538

Query: 234 QKDVIS 239
             + IS
Sbjct: 539 MDEAIS 544



 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----MLPR 68
           ++L    +++ A+G+ L   GDT +L T   + +            +T  Y        R
Sbjct: 15  VTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQP---GQDFFPLTVNYQERMYAAGR 71

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR       I R+I R +R +     +   Q+I     +  +      
Sbjct: 72  IPGGFLKRE---GRPNDGETLIARLIDRPIRPLFPNGFVNEVQVIATVVSVNPEIQPDMV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G   AL                     G + A   G + G  +++    E     +D
Sbjct: 129 AMIGTSAALAISGI-------------PFSGPIGAARVGYIGGEYVLNPTLKELEESQLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD+  ++     +E    ++D     +    ++   +I    +
Sbjct: 176 LVVAGTDNAVLMV---ESEADVLAEDVMLGAVVYGHEQSQSIINAINE 220


>gi|293374237|ref|ZP_06620565.1| polyribonucleotide nucleotidyltransferase [Turicibacter sanguinis
           PC909]
 gi|325845651|ref|ZP_08168935.1| polyribonucleotide nucleotidyltransferase [Turicibacter sp. HGF1]
 gi|292647070|gb|EFF65052.1| polyribonucleotide nucleotidyltransferase [Turicibacter sanguinis
           PC909]
 gi|325488349|gb|EGC90774.1| polyribonucleotide nucleotidyltransferase [Turicibacter sp. HGF1]
          Length = 701

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 87/239 (36%), Gaps = 26/239 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  L   T  A  E ++   +   + 
Sbjct: 314 VRPDGRKIDEIRPLSSRVDLLPRTHGSALFTRGQTQALSVCTLGALNEHQMLDGLEVEET 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R      +  RAL+ V+         + +  
Sbjct: 374 KRFMHHYNFPPFSVGETGR----YGAPGRREIGHGALGERALKQVMPSEKDFPYTVRLVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +AL                   +K  VA I+ G++       
Sbjct: 430 EVLESNGSTSQASICASTMALMAAGV-------------PIKAPVAGIAMGLVKKGENYT 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
            + D+   ED   D+D     T  G +  +Q   +    ++      L  AK     ++
Sbjct: 477 VLTDIQGMEDHLGDMDFKVAGTAKG-VTALQMDIKIEGLNRQILEEALQQAKVGRMQIL 534



 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 85/233 (36%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R +S     ++K A  S LV++GDT +L    A+ E K +  +     +       G +P
Sbjct: 14  RPLSFEIGELAKQANASVLVRYGDTVVLSTCVASKEPKDIDFFPLTIGYEERLYAVGKVP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I     +  D     
Sbjct: 74  ---GGFIKRE---GRPSEHAVLSGRLIDRPIRPLFPDGFRNDVQVINYVMSVDHDNSPAI 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G                +        +G +A +  G + G  I++    E    D+
Sbjct: 128 AAMIG-------------SSLSLSISDIPFEGPIAGVVVGRVDGKFIINPTVEELEKSDI 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     T    I  V+  A+     ++     +    + I  ++  Q+ +++ 
Sbjct: 175 DLTVAGTKDA-INMVEAGAKEVP--EEDMLEAIMFGHEMIKQIVAFQEQIVAE 224


>gi|257468232|ref|ZP_05632328.1| polynucleotide phosphorylase/polyadenylase [Fusobacterium ulcerans
           ATCC 49185]
 gi|317062514|ref|ZP_07926999.1| polyribonucleotide nucleotidyltransferase [Fusobacterium ulcerans
           ATCC 49185]
 gi|313688190|gb|EFS25025.1| polyribonucleotide nucleotidyltransferase [Fusobacterium ulcerans
           ATCC 49185]
          Length = 699

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 91/246 (36%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR+  ++R +     V     GS +   G+T  +   TL  K    + +        
Sbjct: 324 RVDGRKTTEIRPLFAEVGVLPIPHGSAMFTRGETQAVVVTTLGTKEDEQLVDDLEKEYFK 383

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RAL  V+         I +  +
Sbjct: 384 KFYLHYNFPPYSVGETGRMGSPGRRELGHGS----LAERALSYVIPSEESFPYTIRVVSE 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  ++L                   +K HVA I+ G++        
Sbjct: 440 ITESNGSSSQASICGGSLSLMAAGV-------------PIKEHVAGIAMGLIKEGEEFTV 486

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     L  A D   +++ +
Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKNG-ITALQMDIKITGITEEIMRIALKQALDARNEILVV 545

Query: 234 QKDVIS 239
             + IS
Sbjct: 546 MNNAIS 551



 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 80/231 (34%), Gaps = 29/231 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +S +   +++ + G+ +V++G+T LL+T        +    +     +       G  
Sbjct: 14  RTLSFSTGKIARQSCGAVMVQYGETVLLSTVNRSKEPRKGADFFPLTVDYIEKFYAAGKF 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR    +    R+I R +R +          I+             
Sbjct: 74  P---GGFNKRE---GRPSTNATLTARLIDRPIRPMFPEGFNHDVHIVNTVFSYDEKNTPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              I G+ +AL                     G VA +  G   G  I++    E  T D
Sbjct: 128 YLGIIGSSMAL-------------MLSDLPFLGPVAGVVVGYKDGEFILNPTPEELETSD 174

Query: 187 VDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           ++ +   +    ++VE    A      ++   A +  A + I  +   Q++
Sbjct: 175 LELSVAGSKDAVNMVE----AGAKELDEETMLAAIMFAHENIKKICAFQEE 221


>gi|256827187|ref|YP_003151146.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Cryptobacterium curtum DSM 15641]
 gi|256583330|gb|ACU94464.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Cryptobacterium curtum DSM 15641]
          Length = 742

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 91/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMW--IRNTKHG 57
           R+ GR  +++R + +         GS L + G T  L   T     +      I  ++  
Sbjct: 315 RVDGRAADEIRPLYIRPGYLPRVHGSGLFQRGQTQALSVCTLGTLREGQRLDTIDPSEGK 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
               +Y   P  TG   +  A   R+ G       +  RAL  V+         I +  +
Sbjct: 375 RYMHQYNFPPYCTGEVGRIGAPKRREIGHG----ALAERALIPVLPSEDDFPYAIRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           +++++G +  A+  G+ +AL D                 +   V+ I+ G++       I
Sbjct: 431 ILESNGSSSMASTCGSTLALMDAGV-------------PITAPVSGIAMGLIKEGDETVI 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    S +     L  AK+  A ++  
Sbjct: 478 LSDIQGLEDFLGDMDFKVTGTARG-ITALQMDNKARGLSTEILGRALAQAKEGRAFILSA 536

Query: 234 QKDVISNE 241
             + IS  
Sbjct: 537 MLEQISEP 544



 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 78/230 (33%), Gaps = 28/230 (12%)

Query: 15  SLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRST 70
            L    ++K A G+ LV  G+T  L TA +   E+    +             G +P   
Sbjct: 16  RLETGELAKQATGAVLVTQGETTCLVTAVVSKEEKDYDFFPLTVDFMEKMYAVGRIP--- 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G  +KRE   G+   +     RMI R +R            I+    V  ADG       
Sbjct: 73  GGYLKRE---GKASDKGTLTARMIDRPIRPGFPDGFKQEVHIVATTFV--ADGQN----- 122

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG--MLCGYPIVDLDYGEDSTIDVD 188
                   DC+      +          G  A +     +  G  IV+  Y E    D++
Sbjct: 123 ------PPDCICVGGASAALLAGGAPFDGPAACVRIARNVETGEFIVNPTYAEQEESDLE 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                T   +I  V+  A     S++   A +N  ++ IA     Q+  +
Sbjct: 177 LTIAGTAD-YISMVEAGANE--VSEEDMLAAMNFGQEAIAAFCDAQQRFL 223


>gi|15676656|ref|NP_273800.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
           MC58]
 gi|81784821|sp|Q9K062|PNP_NEIMB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|7225988|gb|AAF41171.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
           MC58]
          Length = 707

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +++   V     GS L   G+T  L  ATL    +E++   +      
Sbjct: 317 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 377 RFMLHYNFPPYSTGEVGRMGAPKRREIGHG----RLAKRALLAVLPKPEDFSYTMRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 433 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K  
Sbjct: 484 LGDEDHLGDMDFKVAGTTEG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAA 542

Query: 238 ISNE 241
           ++  
Sbjct: 543 VAGP 546



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  +  V  GDT +L   T    ++E    +     +   T   G +P 
Sbjct: 17  VTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAAGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 76  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E +   +D
Sbjct: 131 AMLGASAALV-------------LSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLD 177

Query: 189 ANFVMTDSGHIV 200
                T    ++
Sbjct: 178 LVVAGTSKAVLM 189


>gi|253573573|ref|ZP_04850916.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251847101|gb|EES75106.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 702

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 86/234 (36%), Gaps = 26/234 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R I     +     GS L   G T  L   T  A  + ++   I   + 
Sbjct: 313 VRPDGRKLDEIRPIECDISLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGIDLEES 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      A   R+ G       +  RAL  V+   +     I +  
Sbjct: 373 KRFMHHYNFPPFSVGEARPLRAPGRREIGHG----ALGERALSKVIPPESEFPYTIRLVS 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY--- 172
           +V++++G T  A+I  + +A+ D                 +K  VA ++ G++  G    
Sbjct: 429 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGVAMGLIKDGEHVS 475

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED   D+D     T  G +  +Q   +     +      L  A++ 
Sbjct: 476 ILTDIQGMEDHLGDMDFKVAGTAEG-VTAIQMDIKIDGIDRQILSDALKQAREG 528



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 26/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R + L    ++K A  + +V++GDT +L T T     + +  +     +       G +P
Sbjct: 12  RPLILETGRLAKQANAAVMVRYGDTAVLCTVTASSEPKDLDFFPLTVNYEEKLYAVGKIP 71

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+  R +R +         QI+     +  D     
Sbjct: 72  ---GGFIKRE---GRPSEKAILASRLTDRPIRPLFPEGFRNDVQIVNLVMSVDQDCEPEI 125

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           A++ G   AL                     G +  ++ G + G  +++ D  +    D+
Sbjct: 126 ASMIGTSAALS-------------ISDVPFNGPIGGVAVGRVNGEFVINPDVAQQEASDI 172

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
                 T    I+ V+  AE     ++     +    + I  ++ +
Sbjct: 173 YVVVAGTKDA-IMMVE--AEANEVPEEVMLEAIMFGHEEIKKIVAV 215


>gi|182889712|gb|AAI65543.1| Exosc8 protein [Danio rerio]
          Length = 277

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 88/254 (34%), Gaps = 25/254 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  +L       A+GS LVK G+T ++     E  VP        G++  
Sbjct: 23  RPDGRELGKFRPTTLNINSISTADGSALVKIGNTTVICGIKAELAVPPSEA-QNKGYLVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQI----IID 115
              + P  +         +G  G ++Q   + I   + S  +++L  L   +     ++ 
Sbjct: 82  NVDLPPLCSS-----RFRAGPPGEQAQAASQFIADVIESSDLINLEELCIEKAKLCWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           CD+  +  DG    A IT    AL                 E    K +  ++ +  V +
Sbjct: 137 CDIMCLDYDGNLLDACITVLLAALKTAQLPEVTINKETDLAEVDIEKKRRLKINRHPVGS 196

Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
                     IVD    E+S        V  +   +  V       + S +     +N A
Sbjct: 197 SFAVFDDSIIIVDPTAEEESLSTALMTVVTDEEDRLCAVHKPG-GTSLSGEKLQHCINRA 255

Query: 224 KDRIADLIKLQKDV 237
             R  ++ KL   V
Sbjct: 256 ITRNKEIRKLLDKV 269


>gi|188991049|ref|YP_001903059.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
           pv. campestris str. B100]
 gi|167732809|emb|CAP51003.1| polyribonucleotide nucleotidyltransferase [Xanthomonas campestris
           pv. campestris]
          Length = 735

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 91/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR  + +R IS+   V     GS L   G+T  +   TL       + +   G   
Sbjct: 346 VRIDGRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTARDGQVIDAVAGEYK 405

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  A   R+ G      R+  R + +V+         I +  
Sbjct: 406 ENFLFHYNFPPYSVGECGRFGAPKRREIGHG----RLAKRGVLAVMPSLEEFPYTIRVVS 461

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 462 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEDDRFV 508

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  AK     ++ 
Sbjct: 509 VLSDILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILG 567

Query: 233 LQKDVISNE 241
                ++  
Sbjct: 568 EMSKALTTP 576



 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 79/228 (34%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A G+ +VK  DT LL TA    T  E    +     +       G +P 
Sbjct: 46  VTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTVDYQEKFYAGGRIP- 104

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +   I R+I R +R +         QII     +  D     A
Sbjct: 105 --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 159

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G   G  I++    E     ++
Sbjct: 160 ALIGASAALSLAGT-------------PFNGPIGAAKVGYKNGEYILNPTITELKDSQLE 206

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T +  ++     +E A  S++     +      +  +I +  +
Sbjct: 207 LVVAGTANAVLMV---ESEAALLSEEVMLGAVTFGHREMQKVINIINE 251


>gi|152995062|ref|YP_001339897.1| polynucleotide phosphorylase/polyadenylase [Marinomonas sp. MWYL1]
 gi|189037308|sp|A6VU33|PNP_MARMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|150835986|gb|ABR69962.1| Polyribonucleotide nucleotidyltransferase [Marinomonas sp. MWYL1]
          Length = 702

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 95/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I++   +     GS L   G+T  + T TL       + +   G    
Sbjct: 315 RIDGRDNKTVRPINVEVGLLSKTHGSALFTRGETQAIATCTLGTSRDSQMTDGLTGESKD 374

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     R+  R +++V+         I +  +
Sbjct: 375 SFMLHYNFPPYSVGECGR----MGGVGRREIGHGRLARRGVQAVLPSEDEFPYTIRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +++ D                 LK  VA I+ G++    G+ +
Sbjct: 431 ITESNGSSSMASVCGASLSMMDAGV-------------PLKAPVAGIAMGLIKEDDGFAV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     L+ A +    +++ 
Sbjct: 478 LTDILGDEDHLGDMDFKVAGTAEG-ITALQMDIKIEGINEEIMDIALSQALEARTHILRE 536

Query: 234 QKDVIS 239
              VI 
Sbjct: 537 MAKVIG 542



 Score = 68.6 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 68/218 (31%), Gaps = 28/218 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ L   GD  +L T       +     +  +  +       G +P 
Sbjct: 15  VTLETGRIARQATGAVLCTIGDAQVLATVVGAKSAKAGQDFFPLSVHYQERAYAVGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR   +     R+I R +R +     +   Q++        +     A
Sbjct: 74  --GGFLKRE---GRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVCTVMSTNTNLDADIA 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187
           A+     AL                     G + A   G       +++  Y +     +
Sbjct: 129 AMLATSAALTISGI-------------PFNGPIGAARVGFNDESGYVLNPSYSDLDGSLL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
           D     T    ++     +E    ++D     +  A  
Sbjct: 176 DMVVAGTKDAVLMV---ESEAQELTEDEMLGAVLYAHK 210


>gi|24943088|gb|AAK13047.1| 3'-5' RNA exonuclease [Homo sapiens]
          Length = 783

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 19/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R +S    + K   GS L + G T +L T T +        ++V   I  
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 417

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   ++ R+ G       +  +AL  V+         I 
Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHG----ALAEKALYPVIPRDF--PFTIR 471

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  V K        G +  Y 
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEK---GEIEDYR 528

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T+ G I  +Q   +            +  A     ++++
Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587

Query: 233 LQKDVISNE 241
           +    IS  
Sbjct: 588 IMNKTISKP 596



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 27/203 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R++ ++     ++A+GS +V+ GDT ++ TA   T             +    A  G +P
Sbjct: 54  RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
               N ++RE  +     +     R+I R++R +         Q++  C+++  DG    
Sbjct: 114 ---TNYLRREVGT---SDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNEP 165

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI GA VAL                     G V A+  G++ G  +V+    E S+ 
Sbjct: 166 DVLAINGASVALS-------------LSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSS 212

Query: 186 DVDANFVMTDSGHIVEVQGSAER 208
            ++          IV ++ SAE 
Sbjct: 213 TLNLVVAGAPKSQIVMLEASAEN 235


>gi|20372922|emb|CAD30289.1| polynucleotide phosphorylase-like protein [Homo sapiens]
 gi|31657166|gb|AAH53660.1| Polyribonucleotide nucleotidyltransferase 1 [Homo sapiens]
          Length = 783

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 19/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R +S    + K   GS L + G T +L T T +        ++V   I  
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 417

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   ++ R+ G       +  +AL  V+         I 
Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHG----ALAEKALYPVIPRDF--PFTIR 471

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  V K        G +  Y 
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEK---GEIEDYR 528

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T+ G I  +Q   +            +  A     ++++
Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587

Query: 233 LQKDVISNE 241
           +    IS  
Sbjct: 588 IMNKTISKP 596



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 27/203 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R++ ++     ++A+GS +V+ GDT ++ TA   T             +    A  G +P
Sbjct: 54  RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
               N ++RE  +     +     R+I R++R +         Q++  C+++  DG    
Sbjct: 114 ---TNYLRREVGT---SDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNEP 165

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI GA VAL                     G V A+  G++ G  +V+    E S+ 
Sbjct: 166 DVLAINGASVALS-------------LSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSS 212

Query: 186 DVDANFVMTDSGHIVEVQGSAER 208
            ++          IV ++ SAE 
Sbjct: 213 TLNLVVAGAPKSQIVMLEASAEN 235


>gi|319787423|ref|YP_004146898.1| polyribonucleotide nucleotidyltransferase [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465935|gb|ADV27667.1| polyribonucleotide nucleotidyltransferase [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 701

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 90/246 (36%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR  + +R IS+   V     GS +   G+T  +   TL       I +   G   
Sbjct: 315 VRIDGRALDTVRPISVKTGVLPRTHGSAMFTRGETQAIVVTTLGTTRDGQIIDAVSGEYK 374

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  A   R+ G      R+  R + +V+         + +  
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHG----RLAKRGVLAVMPSIEEFPYTVRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEDDRFV 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  AK     ++ 
Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTADG-VSALQMDIKIEGITEEIMKQALEQAKAGRLHILG 536

Query: 233 LQKDVI 238
                +
Sbjct: 537 EMAKAL 542



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 84/234 (35%), Gaps = 31/234 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A GS +VK  DT LL TA    +  E    +     +       G +P 
Sbjct: 15  VTLETGEVARQASGSVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI--QADGGTR 126
             G   KRE   GR   +   I R+I R +R +         QII     +  + DG   
Sbjct: 74  --GGFFKRE---GRPTEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLNPEIDGDI- 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                    KG + A   G   G  I++    E    +
Sbjct: 128 -PALIGASAALSLAGT-------------PFKGPIGAAKVGYKDGQYILNPSASE--LAE 171

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                V+  + + V +  S E A  S++     +      +  +I    ++++ 
Sbjct: 172 SKLELVVAGTANAVLMVES-EAALLSEEVMLGAVTFGHREMQKVINAINELVAE 224


>gi|260574490|ref|ZP_05842494.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sp. SW2]
 gi|259023386|gb|EEW26678.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sp. SW2]
          Length = 711

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 94/249 (37%), Gaps = 27/249 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I+    +     GS L   G+T  L   TL       I +  HG   +
Sbjct: 318 RIDGRDNKTVRPITSETGILPRTHGSALFTRGETQGLVITTLGTGEDEQIIDALHGNSRS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+  +      I +  +
Sbjct: 378 NFLLHYNFPPYSVGEVGRF----GPPGRREIGHGKLAWRALQAVLPPATEFPYTIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGY-- 172
           + +++G +  A++ G  +++ D                 LK  VA ++ G++    G   
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEDDGRFA 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T++G I  +Q   + A  +       L  AKD    ++ 
Sbjct: 481 VLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKIAGITPAIMEQALAQAKDGRLHILG 539

Query: 233 LQKDVISNE 241
                ++  
Sbjct: 540 EMSKALTGP 548



 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 78/232 (33%), Gaps = 35/232 (15%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+GS +   G+T ++   T     +     +     +       G +P 
Sbjct: 16  LTLETGKVARQADGSVIATLGETSVMANVTFAKTAKPGQDFFPLTVHYQERYYAAGKVP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++   V+  D      
Sbjct: 75  --GGFFKREA---RPSEKETLTSRLIDRPIRPLFVDGF--KNEVLLIVTVLSHDLVNEPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS--- 183
             A+  A  AL                     G + A   G   G  +++ D  ED    
Sbjct: 128 ILAMIAASAAL-------------TISGVPFMGPIGAARVGFSKGAYVLNPD-VEDMQKL 173

Query: 184 --TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
               +   + V+  +   V +  S E    S+D     +    + +  +I L
Sbjct: 174 RENPEQRLDLVIAGTKDAVMMVES-EAYELSEDEMLGAVKFGHEAMQPVIDL 224


>gi|188528628|ref|NP_149100.2| polyribonucleotide nucleotidyltransferase 1, mitochondrial
           precursor [Homo sapiens]
 gi|115502437|sp|Q8TCS8|PNPT1_HUMAN RecName: Full=Polyribonucleotide nucleotidyltransferase 1,
           mitochondrial; AltName: Full=3'-5' RNA exonuclease
           OLD35; AltName: Full=PNPase old-35; AltName:
           Full=Polynucleotide phosphorylase 1; Short=PNPase 1;
           AltName: Full=Polynucleotide phosphorylase-like protein;
           Flags: Precursor
 gi|62988884|gb|AAY24271.1| unknown [Homo sapiens]
 gi|119620492|gb|EAX00087.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_b [Homo
           sapiens]
          Length = 783

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 19/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R +S    + K   GS L + G T +L T T +        ++V   I  
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 417

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   ++ R+ G       +  +AL  V+         I 
Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHG----ALAEKALYPVIPRDF--PFTIR 471

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  V K        G +  Y 
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEK---GEIEDYR 528

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T+ G I  +Q   +            +  A     ++++
Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQ 587

Query: 233 LQKDVISNE 241
           +    IS  
Sbjct: 588 IMNKTISKP 596



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 27/203 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R++ ++     ++A+GS +V+ GDT ++ TA   T             +    A  G +P
Sbjct: 54  RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
               N ++RE  +     +     R+I R++R +         Q++  C+++  DG    
Sbjct: 114 ---TNYLRREIGT---SDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNEP 165

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI GA VAL                     G V A+  G++ G  +V+    E S+ 
Sbjct: 166 DVLAINGASVALS-------------LSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSS 212

Query: 186 DVDANFVMTDSGHIVEVQGSAER 208
            ++          IV ++ SAE 
Sbjct: 213 TLNLVVAGAPKSQIVMLEASAEN 235


>gi|315126162|ref|YP_004068165.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas sp.
           SM9913]
 gi|315014676|gb|ADT68014.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas sp.
           SM9913]
          Length = 708

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 92/246 (37%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+ + +R + +   V     GS +   G+T  L TATL  +        +  T   
Sbjct: 317 RIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDSQLIDDLTGTHKN 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G       +  R +++V+         I +  +
Sbjct: 377 HFMLNYNFPPFCVGETGFVGSPKRREIGHG----NLAKRGIQAVMPTLTEFPYSIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G  +AL +                 +K  VA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGTSLALMNAGV-------------PIKASVAGIAMGLVKEEENFVV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +Q+     L  AK     ++ +
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTTNG-ITALQMDIKIEGITQEIMQIALKQAKAARLHILGV 538

Query: 234 QKDVIS 239
             + IS
Sbjct: 539 MDEAIS 544



 Score = 78.2 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 78/228 (34%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----MLPR 68
           ++L    +++ A+G+ L   GDT +L T   + +            +T  Y        R
Sbjct: 15  VTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQP---GQDFFPLTVNYQERMYAAGR 71

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR       I R+I R +R +     +   Q+I     +  +      
Sbjct: 72  IPGGFLKRE---GRPNDGETLIARLIDRPIRPLFPNGFVNEVQVIATVVSVNPEIQPDMV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G   AL                     G + A   G + G  +++    E     +D
Sbjct: 129 AMIGTSAALAISGI-------------PFSGPIGASRVGYINGEYVLNPTLKELEESQLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD+  ++     +E    ++D     +    ++   +IK   +
Sbjct: 176 LVVAGTDNAVLMV---ESEADVLAEDVMLGAVVYGHEQSQSIIKAINE 220


>gi|56707819|ref|YP_169715.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110670290|ref|YP_666847.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. tularensis FSC198]
 gi|224456890|ref|ZP_03665363.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254370315|ref|ZP_04986320.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874633|ref|ZP_05247343.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|81597693|sp|Q5NGX7|PNP_FRATT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123169466|sp|Q14IC9|PNP_FRAT1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56604311|emb|CAG45332.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320623|emb|CAL08715.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. tularensis FSC198]
 gi|151568558|gb|EDN34212.1| hypothetical protein FTBG_00070 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840632|gb|EET19068.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282158995|gb|ADA78386.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 693

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 19/245 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I++   V     GS L   G+T  L   TL       +  +  G    
Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376

Query: 62  E----YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                Y   P S G   +   A   R+ G +     +  RA ++V          + +  
Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKRREIGHA----NLAKRATQAVFPNEEAYPYVVRVVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A + G+ +++ D    + +      +  +  G   A+         + D
Sbjct: 433 EILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAV---------LSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G +  +Q   +    S++     L  A+     ++ +  +
Sbjct: 484 ILGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARAGRLHILGIMNE 542

Query: 237 VISNE 241
           VI   
Sbjct: 543 VIKEH 547



 Score = 71.7 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 82/221 (37%), Gaps = 30/221 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           T  +++ A+GS  V  G+  +L T     ++ +    +  +  +   T   G +P   G 
Sbjct: 19  TGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            ++RE   GR       I R+I R++R           QI+    V+  DG       A+
Sbjct: 76  FLRRE---GRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVAT--VLSYDGAFSPDILAL 130

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  +L       +D              VA +  G   G  I++ +  +    D+D  
Sbjct: 131 IGASASLAISGAPYDDV-------------VAGVRVGYTNGKYILNPNKQDLRDSDLDLV 177

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
              TD   I+ V+  +E  +  +      +  A   +  +I
Sbjct: 178 VSGTDDA-ILMVE--SEANSLPESVMLGGILYAHKHLKTII 215


>gi|218259530|ref|ZP_03475243.1| hypothetical protein PRABACTJOHN_00901 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225061|gb|EEC97711.1| hypothetical protein PRABACTJOHN_00901 [Parabacteroides johnsonii
           DSM 18315]
          Length = 743

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 90/245 (36%), Gaps = 24/245 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           RL GR+  ++R I +         GS +   G+T  L+T TL  K    +     N    
Sbjct: 319 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKADEKMIDDVLNHGKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG       V  R+ G       +  RAL+ ++         + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKASRGVGRREIGHG----NLAHRALKRMIPTD--YPYVVRVISD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176
           +++++G +  A +    +AL D    M+   +   +          IS      Y I+ D
Sbjct: 433 ILESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMG--------LISENKGQNYAILSD 484

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIK 232
           +   ED   D+D     T  G I   Q   +    S +     L  AK+     +  +++
Sbjct: 485 ILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILENALAQAKEGRMHILGKIME 543

Query: 233 LQKDV 237
            Q +V
Sbjct: 544 AQPEV 548



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 82/230 (35%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R I++      K A+G+  V+ G+T LL T          V       ++    + +G  
Sbjct: 15  RTITIETGKLAKQADGAVTVRMGNTVLLATVCAAKDANPGVDFMPLQVEYKEKFSAFGRF 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+         R++ RALR +   +     ++ ++  +  ADG   
Sbjct: 75  P---GGFTKRE---GKASDYEILTSRLVDRALRPLFPDN--YHAEVYVNVILFSADG--- 123

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                     + D L  +   +          G ++      + G  +V+  + E    D
Sbjct: 124 --------EDMPDALAGLAASAALAVSDIPFNGPISECRVARIDGKYVVNPTFSELEKAD 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D   V     +I+ V+G  E     +      + +A + I    + Q +
Sbjct: 176 IDI-MVGATLDNIMMVEG--EMDEVQESEMLEAIKVAHEAIKIQCQAQLE 222


>gi|162452817|ref|YP_001615184.1| polynucleotide phosphorylase/polyadenylase [Sorangium cellulosum
           'So ce 56']
 gi|187611292|sp|A9F8Z2|PNP_SORC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|161163399|emb|CAN94704.1| polynucleotide phosphorylase [Sorangium cellulosum 'So ce 56']
          Length = 757

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 88/241 (36%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I     +     GS L + G+T  + T TL         +   G    
Sbjct: 316 RIDGRDGRSIRPIMCEVGLLPRVHGSALFQRGETQAIVTTTLGTSTDEQKIDGLMGETWK 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG          R+ G       +  RAL  ++         I I  +
Sbjct: 376 RFYLHYNFPPFSTGETKPLRGPGRREIGHG----ALAERALSRMIPAPDQFPYTIRIVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
            ++++G +  AA+ G  ++L D    ++       +  +++G+  A+         + D+
Sbjct: 432 TLESNGSSSMAAVCGGCLSLMDAGVPIKSPVAGIAMGLIMEGNKYAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   + A  S+      L+ A++    ++    + 
Sbjct: 483 LGDEDHLGDMDFKVCGTARG-VTAIQMDIKIAGLSRQILAQALDQAREGRLHILGKMLET 541

Query: 238 I 238
           +
Sbjct: 542 L 542



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 85/237 (35%), Gaps = 29/237 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67
           R ++L    ++K A G+ LV +GDT +L TA  +++ P    +    +    T   G +P
Sbjct: 12  RALTLETGRLAKQAHGAVLVTYGDTMVLVTAVSQDERPGLDFFPLTCEFVEKTYAAGKIP 71

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KREA   RQ        R++ R LR +         QII              
Sbjct: 72  ---GGFFKREA---RQREEEILSSRLMDRPLRPLFPEGFKRDTQIIATVLSSDKQNKADV 125

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA  ALH                    G V  +  G L G  +      +    D+
Sbjct: 126 LALTGASAALH-------------ISDIPWHGPVVGVRVGRLDGEFVAYPTVADIERCDI 172

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA---DLIKLQKDVISNE 241
           D   V      IV V+G A  A  ++      L  A +      DLI+  +  +   
Sbjct: 173 DL-VVACSRDAIVMVEGGAAEA--TEAEIIDALMFAHETAQPVIDLIEKMRAAVGKP 226


>gi|86157534|ref|YP_464319.1| polynucleotide phosphorylase/polyadenylase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774045|gb|ABC80882.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 749

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 91/246 (36%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59
           R+ GR    +R+I+    +     GS L   G+T  L   TL             G +  
Sbjct: 352 RIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTLGTAEDEQRVEMLTGMVFK 411

Query: 60  --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G       +  RALR+V+         + +  D
Sbjct: 412 KFMLHYNFPPFSVGEVKFLRSPGRREIGHG----ALAERALRAVMPPEDQFPYTVRVVSD 467

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           +++++G +  A++ G  ++L D                 +K  VA I+ G++  G     
Sbjct: 468 IMESNGSSSMASVCGGCLSLMDAGV-------------PIKAPVAGIAMGLIKEGEKIAI 514

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     L+ A +    ++  
Sbjct: 515 LSDILGDEDHLGDMDFKVCGTAAG-ITSIQMDIKIGGVTREILEQALSQAAEGRKHILGE 573

Query: 234 QKDVIS 239
               +S
Sbjct: 574 MAKALS 579



 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 86/238 (36%), Gaps = 32/238 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
           E+ L    V+K A GS  V+ GD+ +L TA      +E +  +     +       G +P
Sbjct: 42  EVLLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDYQEKLFAAGRVP 101

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G+  +RE   GR   +     R++ R+ R +         Q+I        +  T  
Sbjct: 102 ---GSFFRRE---GRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQENDTDV 155

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA  ALH                    G +A +    + G  + +         D 
Sbjct: 156 LALTGASAALH-------------ISDIPFGGPIAGVRVARVGGQLVANPTLA--QRADA 200

Query: 188 DANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ---KDVISNE 241
           D + VM  S   IV V+G A+    S+      L   +  +  L+  Q   +    N+
Sbjct: 201 DLDVVMAASRDAIVMVEGGAQE--VSEAVMIEALLFGQAAVQPLLDAQDALRAATGNK 256


>gi|292486841|ref|YP_003529711.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora
           CFBP1430]
 gi|292900761|ref|YP_003540130.1| polynucleotide phosphorylase [Erwinia amylovora ATCC 49946]
 gi|291200609|emb|CBJ47741.1| polynucleotide phosphorylase [Erwinia amylovora ATCC 49946]
 gi|291552258|emb|CBA19295.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora
           CFBP1430]
 gi|312170909|emb|CBX79168.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 710

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 94/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 375 NFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKGEAFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKDDNNFVV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILSV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISGP 544



 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 57/187 (30%), Gaps = 24/187 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR         R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G L    +++    E     +D
Sbjct: 130 AMIGASAALALSGL-------------PFNGPIGAARVGYLNDQYVLNPTSDELKESKLD 176

Query: 189 ANFVMTD 195
                T 
Sbjct: 177 LVVAGTQ 183


>gi|154490390|ref|ZP_02030651.1| hypothetical protein PARMER_00623 [Parabacteroides merdae ATCC
           43184]
 gi|154089001|gb|EDN88045.1| hypothetical protein PARMER_00623 [Parabacteroides merdae ATCC
           43184]
          Length = 743

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 90/245 (36%), Gaps = 24/245 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           RL GR+  ++R I +         GS +   G+T  L+T TL  K    +     N    
Sbjct: 319 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKADEKMIDDVLNHGKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG       V  R+ G       +  RAL+ ++         + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKASRGVGRREIGHG----NLAHRALKRMIPTD--YPYVVRVISD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176
           +++++G +  A +    +AL D    M+   +   +          IS      Y I+ D
Sbjct: 433 ILESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMG--------LISENKGQNYAILSD 484

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIK 232
           +   ED   D+D     T  G I   Q   +    S +     L  AK+     +  +++
Sbjct: 485 ILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILENALAQAKEGRMHILGKIME 543

Query: 233 LQKDV 237
            Q +V
Sbjct: 544 AQPEV 548



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 82/230 (35%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R I++      K A+G+  V+ G+T LL T          V       ++    + +G  
Sbjct: 15  RTITIETGKLAKQADGAVTVRMGNTVLLATVCAAKDANPGVDFMPLQVEYKEKFSAFGRF 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+         R++ RALR +   +     ++ ++  +  ADG   
Sbjct: 75  P---GGFTKRE---GKASDYEILTSRLVDRALRPLFPDN--YHAEVYVNVILFSADG--- 123

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                     + D L  +   +          G ++      + G  +V+  + E    D
Sbjct: 124 --------EDMPDALAGLAASAALAVSDIPFNGPISECRVARIDGKYVVNPTFSELEKAD 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D   V     +I+ V+G  E     +      + +A + I    + Q +
Sbjct: 176 IDI-MVGATLDNIMMVEG--EMDEVQESEMLEAIKVAHEAIKVQCQAQLE 222


>gi|262042723|ref|ZP_06015877.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259039948|gb|EEW41065.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 687

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 99/246 (40%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL         +   G +T 
Sbjct: 294 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGELTD 353

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 354 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPTIEEFPYTVRVVSE 409

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 410 ITESNGSSSMASVCGASLALMDAGV-------------PVKAAVAGIAMGLVKEGDNFVV 456

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LNLAK     ++ +
Sbjct: 457 LSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNLAKGARLHILGV 515

Query: 234 QKDVIS 239
            +  I+
Sbjct: 516 MEQAIN 521



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 72/224 (32%), Gaps = 30/224 (13%)

Query: 22  KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVKRE 77
           + A  + +V   DT +  T   ++K            +T  Y     + G       +RE
Sbjct: 4   RQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGKIPGGFFRRE 60

Query: 78  AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137
              GR       I R+I R +R +     +   Q+I     +         A+ GA  AL
Sbjct: 61  ---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAAL 117

Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197
                                G + A   G +    +++    E  +  +D     T++ 
Sbjct: 118 SLSGI-------------PFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVAGTEAA 164

Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
            ++     +E    S+D     +    ++    I ++  L K+ 
Sbjct: 165 VLMV---ESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEA 205


>gi|254496145|ref|ZP_05109043.1| polynucleotide phosphorylase/polyadenylase [Legionella drancourtii
           LLAP12]
 gi|254354632|gb|EET13269.1| polynucleotide phosphorylase/polyadenylase [Legionella drancourtii
           LLAP12]
          Length = 719

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 94/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           R+ GR    +R I++  ++ +   GSCL   G+T  +  ATL  +    + +        
Sbjct: 314 RIDGRDHKTVRPIAVRTKLLERTHGSCLFTRGETQAIVVATLGNERDAQMLDGINVESKD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  RAL +V+  ++     + +  +
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRALLAVLPEASAFPYVLRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A + G  +AL D                 LK  VA ++ G++        
Sbjct: 430 ITESNGSSSMATVCGTSLALMDAGV-------------PLKAPVAGVAMGLIKEGDRFAV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   +    + +     L  A      ++ +
Sbjct: 477 LTDILGDEDHLGDMDFKVAGTEQG-ITALQMDIKITGITSEIMEQALEQALAGRIHILGI 535

Query: 234 QKDVISNE 241
             + ++  
Sbjct: 536 MNNALAEH 543



 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 72/227 (31%), Gaps = 34/227 (14%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRST 70
           L    +++ A+G+ L     T +L T   +    E    +     +       G +P   
Sbjct: 17  LETGEIARQADGAVLASMNGTQVLVTVVGKKEGGEGNDFFPLTVNYQEKFYAVGKIP--- 73

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR       I R+I R +R +   +     QII     +  +  +   A+
Sbjct: 74  GGFNKRE---GRPSENETLISRLIDRPIRPLFPDNFTNEVQIIATVLSLNPEISSDIIAM 130

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  AL                     G + A   G   G  +++          +D  
Sbjct: 131 IGASAALA-------------ISGVPFNGPIGAARVGYKDGVYLLNPSRKALEESKLDLV 177

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFF-------AMLNLAKDRIADL 230
              T    I+ V+  +E    S+D           M+      I +L
Sbjct: 178 VAGTKDA-ILMVE--SEAKELSEDVMRGAIMFGHEMMKSVIKAIEEL 221


>gi|86141304|ref|ZP_01059850.1| putative polyribonucleotide nucleotidyltransferase
           [Leeuwenhoekiella blandensis MED217]
 gi|85831863|gb|EAQ50318.1| putative polyribonucleotide nucleotidyltransferase
           [Leeuwenhoekiella blandensis MED217]
          Length = 741

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 86/245 (35%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +RL GR+  ++R I           GS +   G+T  L T TL    E            
Sbjct: 317 LRLDGRKTTEIRPIWCETDYLPSVHGSSIFTRGETQALATVTLGTSREANQIDMPSYEGE 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG        S R+ G       +  RAL+ ++         + +  
Sbjct: 377 ETFYLHYNFPPFSTGEARPIRGTSRREVGHG----NLAQRALKGMIPAD--CPYTVRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A +    +A+ D    ++   +   +     G +  +  G      + D
Sbjct: 431 EILESNGSSSMATVCAGTMAIMDAGVKLKKPVSGIAM-----GLITDVETGKYA--VLSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I   Q   +    S +     L+ A+D    ++    D
Sbjct: 484 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKVKGLSYEILVKALHQARDGRLHILNHLTD 542

Query: 237 VISNE 241
            IS  
Sbjct: 543 TISEP 547



 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 79/227 (34%), Gaps = 26/227 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           REIS+      K A GS +V+ G   LL T      +  V        +    A  G  P
Sbjct: 16  REISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQSDVDFLPLTVDYREKFAAAGRYP 75

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KREA        +    R++ R LR +         Q++I   ++  D     
Sbjct: 76  ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKDYHAETQVMI--QLMSHD----- 122

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                    + D +  +   +         +  ++ +  G + G  I++    + +  D+
Sbjct: 123 ------DEVMPDAMAGLAASAAIQLSDFPFECAISEVRVGRVNGEFIINPSRAQLAESDI 176

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D   +   +  ++ V+G  E    S++     +  A + I    + Q
Sbjct: 177 DM-VIGASADSVMMVEG--EMDEISEEEMTEAIKAAHEAIKVQCEAQ 220


>gi|218131390|ref|ZP_03460194.1| hypothetical protein BACEGG_03006 [Bacteroides eggerthii DSM 20697]
 gi|217986322|gb|EEC52659.1| hypothetical protein BACEGG_03006 [Bacteroides eggerthii DSM 20697]
          Length = 770

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR+  ++R I           GS +   G+T  L+T TL  K+   I +        
Sbjct: 370 RLDGRKTTEIRPIWCEIGYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 429

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +         + +  D
Sbjct: 430 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 483

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 484 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNAGEEKY 530

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     L  AK+    ++
Sbjct: 531 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILEKALLQAKEGREYIL 589

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 590 SKITECIAEP 599



 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 28/242 (11%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       I+L      K A+GS +++ G+T LL T    ++ VP            
Sbjct: 63  PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 116

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            ++    R  G   KRE   GR         R++ RALR +   +      + ++  +  
Sbjct: 117 EKFSAFGRFPGGFTKRE---GRASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIILFS 171

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           V + D L  +   +          G ++ +    + G  +++  + 
Sbjct: 172 ADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINPTFD 220

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +    D+D     T   +I+ V+G  E    S+      +  A + I    K Q + ++ 
Sbjct: 221 QLEKADMDLMVGATYE-NIMMVEG--EMNEVSEKDLLEAMKAAHEAIKIQCKAQME-LAE 276

Query: 241 EV 242
           EV
Sbjct: 277 EV 278


>gi|170756696|ref|YP_001781955.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum
           B1 str. Okra]
 gi|226702639|sp|B1II43|PNP_CLOBK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169121908|gb|ACA45744.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum B1
           str. Okra]
          Length = 702

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 85/244 (34%), Gaps = 16/244 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           R  GR  +++R IS    +     G+ L   G T ++T AT     + ++   I   +  
Sbjct: 312 RPDGRAFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIAEEESK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  RAL  ++         I +  +
Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSQEEFPYTIRLVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A++ G+ +AL D    ++  +    +  +    +            I D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLE-------KEKVITDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   +    S       L  AK     ++   K+ 
Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIKEC 539

Query: 238 ISNE 241
           I   
Sbjct: 540 IPEP 543



 Score = 82.1 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 87/236 (36%), Gaps = 31/236 (13%)

Query: 12  REISL---TRRVSKYAEGSCLVKFGDTHLL--TTAT--LEEKVPMWIRNTKHGWITAEYG 64
           R++ +      +   A     + +GDT ++    A+    E +  +  +  +       G
Sbjct: 12  RKMKVDFGKTGMLSNAA--IFMSYGDTVVMINANASKEPREGIDFFPLSVDYEERLYSVG 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G  +KRE   G+   +S    R I R LR +         QI+     ++ D  
Sbjct: 70  KIP---GGFIKRE---GKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQDNL 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               AI G+ +AL                S      VAA+S G++ G  I++    +   
Sbjct: 124 PEILAINGSSLALC-------------LSSIPFTTPVAAVSVGLVDGEFIINPTVAQREN 170

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             +D     T    ++ V+   +     ++  ++ +    +   +++  Q++ ++ 
Sbjct: 171 TILDLTVCATKE-RVMMVEAGGQE--IDEETMYSAIIFGFEECKNIVAFQEEAVAK 223


>gi|261407930|ref|YP_003244171.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp.
           Y412MC10]
 gi|261284393|gb|ACX66364.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp.
           Y412MC10]
          Length = 701

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 87/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR  +++R I     +     GS L   G T  L   T  A  + ++   I   + 
Sbjct: 313 VRPDGRGLSEIRPIDCDTSLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGIDLEET 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      A   R+ G       +  RAL  V+         I +  
Sbjct: 373 KRFMHHYNFPPFSVGEARPLRAPGRREIGHG----ALGERALSKVIPNEVDFPYTIRLVS 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +VI+++G T  A+I  + +A+ D                 +K  VA ++ G++       
Sbjct: 429 EVIESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGVAMGLIKDGDHVS 475

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +     +      L  AK+    ++ 
Sbjct: 476 ILTDIQGMEDHLGDMDFKVAGTPDG-VTAIQMDIKIDGIDRAILQEALQQAKEGRMHILG 534

Query: 233 LQKDVISNE 241
              + I   
Sbjct: 535 KMAEAIQKP 543



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 84/232 (36%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +      ++K A  + +V++G+T +L T T     + +  +     +       G +P
Sbjct: 12  RPLVFETGRLAKQANAAVMVRYGETAVLCTVTASSEPKDLDFFPLTVNYEERLYAVGKIP 71

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+  R +R +         Q++     +  D     
Sbjct: 72  ---GGFIKRE---GRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEPEI 125

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G   AL                     G +  ++ G + G  +V+ +  E    D+
Sbjct: 126 AAMIGTSAALS-------------ISDVPFNGPIGGVAVGRVDGNFVVNPNIAEQEASDI 172

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                 T    I+ V+  AE     ++     +    + I  ++   +++++
Sbjct: 173 YLVVAGTKDA-IMMVE--AEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVA 221


>gi|332654600|ref|ZP_08420343.1| polyribonucleotide nucleotidyltransferase [Ruminococcaceae
           bacterium D16]
 gi|332516564|gb|EGJ46170.1| polyribonucleotide nucleotidyltransferase [Ruminococcaceae
           bacterium D16]
          Length = 716

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 87/234 (37%), Gaps = 27/234 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           R+ GR +N++R ++    V     GS L   G T +L+  TL         +T       
Sbjct: 322 RVDGRAKNEIRPLAAEVGVLPRVHGSGLFTRGQTQVLSVCTLNTLAACQKLDTIWEEDEK 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      + + R+ G       +  RAL  V+         I +  +
Sbjct: 382 RYMHHYNFPPYSVGEARAPRSTNRREYGHG----ALAERALVPVLPSVEEFPYAIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-----Y 172
           V+ ++G T   +I G+ +AL D                 +K  VA ISCG++        
Sbjct: 438 VLSSNGSTSQGSICGSTLALMDAGV-------------PIKAPVAGISCGLIQDDNGGFT 484

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             +D+   ED   ++D     T +G I  +Q   +    + +     L + +D 
Sbjct: 485 TFIDIQGVEDFHGEMDFKVAGTKAG-ITAIQMDLKNDGLTHEIIKEALEITRDA 537



 Score = 85.1 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 82/236 (34%), Gaps = 31/236 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R +++    V++ A  S +VK+G+T +L   T+    P          ++ E+     + 
Sbjct: 23  RPLTIEVGKVAELASASAMVKYGETTVLVAVTV---SPRPRDGIDFFPLSVEFEEKLYAV 79

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G    + ++RE   GR    +    R+I R +R +          I      +  D    
Sbjct: 80  GRIPGSFMRRE---GRPSLPAVLASRLIDRPMRPLFPYDFRNDVCIQCTVMSVDYDCSPE 136

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA   +                     G +  +  G   G  +++ +  +  T  
Sbjct: 137 VAAMIGASACVSY-------------SEIPFAGPIGCLEVGYCDGQIVLNPNQEQRKTSR 183

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           +D     T    +V ++  A+           ++     +  + IK Q D I+  V
Sbjct: 184 MDVTVAATAE-KVVMIEAGADEIP------DEIMYAGIVKAHEEIKKQIDFINQIV 232


>gi|251797391|ref|YP_003012122.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. JDR-2]
 gi|247545017|gb|ACT02036.1| Polyribonucleotide nucleotidyltransferase [Paenibacillus sp. JDR-2]
          Length = 698

 Score =  107 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 84/248 (33%), Gaps = 26/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR   ++R I     +     GS L   G T  L   T  A  + ++   I   + 
Sbjct: 312 VRPDGRALEEIRPIECDVALLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGISPEET 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G            G R      +  RAL  V+         I +  
Sbjct: 372 KRFMHHYNFPPFSVGEAR----PLRPPGRREIGHGALGERALSKVIPSETEFPYTIRLVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 428 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLIKDGDHFS 474

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +     +      L  A+     ++ 
Sbjct: 475 ILSDIQGMEDHLGDMDFKVAGTAQG-VTAIQMDIKINGIDRAILSQALEQARIGRMHILG 533

Query: 233 LQKDVISN 240
               V+S 
Sbjct: 534 KMTAVMSQ 541



 Score = 75.1 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 83/234 (35%), Gaps = 30/234 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R + L    ++K A  +  V++GDT +L T T     + +  +     +       G +P
Sbjct: 11  RTLVLETGRLAKQANAAVTVRYGDTVVLCTVTASAEPKDLDFFPLTVNYEERLYAVGKIP 70

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+  R +R +         Q+      +  +     
Sbjct: 71  ---GGFIKRE---GRPSEKAILSSRLTDRPIRPLFPEGFRNDVQVANIVMSVDQNCTPEI 124

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G   AL                     G +  ++ G + G  I++    +++  ++
Sbjct: 125 AAMIGTSAALS-------------ISDVPFNGPIGGVNVGRVNGQFIINPTVEQEAETEI 171

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI----KLQKDV 237
                 T    I+ V+  AE    ++D     +    D I  ++    +LQ   
Sbjct: 172 FVTVAGTKDA-IMMVE--AEGNEVAEDVMLEAIMFGHDEIKKIVAMIEELQAAA 222


>gi|170586564|ref|XP_001898049.1| 3' exoribonuclease family, domain 2 containing protein [Brugia
           malayi]
 gi|158594444|gb|EDP33028.1| 3' exoribonuclease family, domain 2 containing protein [Brugia
           malayi]
          Length = 752

 Score =  107 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 93/250 (37%), Gaps = 34/250 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--------EEKVPMWIRN 53
           R  GR+ N++R +++   V K   GS L + G T + +T T          + +   +  
Sbjct: 349 RCDGRKFNELRPVNIRMDVHKNLHGSALFQRGQTQVFSTVTFDAPSAAFQPDALSQLLGA 408

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            +       Y     +T         S R+ G       +  +AL+ ++         + 
Sbjct: 409 QQKKMFMLHYQFPSFATTAISSSARTSRRELGHG----ALAEKALKRLIPDDF--PYCLR 462

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY- 172
           + CDV++++G +  A++    +AL D                 +K   A I+ G++    
Sbjct: 463 LACDVLESNGSSSMASVCAGCLALLDAGVQ-------------IKAPAAGIAMGLIINEE 509

Query: 173 -----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                 + D++  ED   D+D     T  G+   +Q   +    +       L  A++ +
Sbjct: 510 RNDYRILTDINGLEDFAGDMDFKIAGTVRGY-TAMQLDLKVPGITPKLVTESLKQARNGL 568

Query: 228 ADLIKLQKDV 237
             L++L K  
Sbjct: 569 EHLLQLMKKA 578



 Score = 85.9 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 76/228 (33%), Gaps = 22/228 (9%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           I      +++ A+G+ +V  G+T +L T                  +T ++     + G 
Sbjct: 45  IRFETGHIARLADGAVVVSQGETSVLATVVGRHS--SASDTADFMPLTVDFQQSASAVG- 101

Query: 73  RVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           R+    +         +I   RMI R++R +      G  QII     +  DG      +
Sbjct: 102 RIPMNYLRRELQRNDADILASRMIDRSIRPLFPKDYSGETQIICKPLAVDDDGDPVMLGL 161

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
             A  AL                    +G + A+   ++    +V+       +  VD  
Sbjct: 162 NAASAAL-------------TLSDIPWEGPLGAVRVALINNEVVVNPSRKNMKSSSVDLV 208

Query: 191 FVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
               D+G  I+ +           ++F   + +    I+ LI+    V
Sbjct: 209 IAGCDNGKRILMIDMDGCEIEM--ENFSECIRIGLQAISHLIQAINKV 254


>gi|218509466|ref|ZP_03507344.1| ribonuclease PH [Rhizobium etli Brasil 5]
          Length = 60

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/60 (65%), Positives = 49/60 (81%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
          MR SGR+ +QMR++S  R  SK+AEGSCLVKFGDTH+L TA+LE+K P W+RNT  GW+T
Sbjct: 1  MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEDKTPPWLRNTAKGWVT 60


>gi|188532508|ref|YP_001906305.1| polynucleotide phosphorylase/polyadenylase [Erwinia tasmaniensis
           Et1/99]
 gi|226702651|sp|B2VGN7|PNP_ERWT9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|188027550|emb|CAO95397.1| Polyribonucleotide nucleotidyltransferase [Erwinia tasmaniensis
           Et1/99]
          Length = 710

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 94/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 375 NFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKGDAFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKDENNFVV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISGP 544



 Score = 66.7 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 68/212 (32%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQGFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR         R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G L    +++    E     +D
Sbjct: 130 AMIGASAALALSGL-------------PFNGPIGAARVGYLNDQYVLNPTSDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T  G ++ V+  AE    S+D     +
Sbjct: 177 LVVAGTK-GAVLMVESEAE--LLSEDQMLGAV 205


>gi|329929308|ref|ZP_08283061.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. HGF5]
 gi|328936677|gb|EGG33120.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. HGF5]
          Length = 701

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 87/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR  +++R I     +     GS L   G T  L   T  A  + ++   I   + 
Sbjct: 313 VRPDGRGLSEIRPIDCDTSLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGIDLEET 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      A   R+ G       +  RAL  V+         I +  
Sbjct: 373 KRFMHHYNFPPFSVGEARPLRAPGRREIGHG----ALGERALSKVIPNEVDFPYTIRLVS 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +VI+++G T  A+I  + +A+ D                 +K  VA ++ G++       
Sbjct: 429 EVIESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGVAMGLIKDGDHVS 475

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +     +      L  AK+    ++ 
Sbjct: 476 ILTDIQGMEDHLGDMDFKVAGTPDG-VTAIQMDIKIDGIDRAILQEALQQAKEGRMHILG 534

Query: 233 LQKDVISNE 241
              + I   
Sbjct: 535 KMAEAIQKP 543



 Score = 82.4 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 84/232 (36%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +      ++K A  + +V++G+T +L T T     + +  +     +       G +P
Sbjct: 12  RPLVFETGRLAKQANAAVMVRYGETAVLCTVTASSEPKDLDFFPLTVNYEERLYAVGKIP 71

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+  R +R +         Q++     +  D     
Sbjct: 72  ---GGFIKRE---GRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEPEI 125

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G   AL                     G +  ++ G + G  +V+ +  E    D+
Sbjct: 126 AAMIGTSAALS-------------ISDVPFNGPIGGVAVGRVDGNFVVNPNIAEQEASDI 172

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                 T    I+ V+  AE     ++     +    + I  ++   +++++
Sbjct: 173 YLVVAGTRDA-IMMVE--AEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVA 221


>gi|324505266|gb|ADY42265.1| Polyribonucleotide nucleotidyltransferase 1 [Ascaris suum]
          Length = 746

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 94/251 (37%), Gaps = 34/251 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--------EEKVPMWIR 52
           +R  GR  N  R I++   + K   GS L + G T +L T T          + +   + 
Sbjct: 343 VRCDGRALNDFRPINIEVDLYKKLHGSALFQRGQTQVLGTVTFDAPSAAFHPDSISQLLG 402

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
             +       Y   P +         ++ R+ G       +  +AL+ ++  +      +
Sbjct: 403 AQRRKMFMLHYEFPPYAVNEISSSRGLNRRELGHG----ALAEKALQHLIPENF--PYSV 456

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG- 171
            + C V++++G +  A++    +AL D                 LK   A ++ G++   
Sbjct: 457 RLACQVLESNGSSSMASVCVGSLALLDAGV-------------PLKAPAAGVAIGLITNS 503

Query: 172 -----YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                  + D+   ED   D+D     T +G +  +Q   + A  S+      ++  ++ 
Sbjct: 504 DASQYKLLTDILGIEDYAGDMDFKIAGTSNG-LTAMQLDLKIAGISRQLLNEAISRGREG 562

Query: 227 IADLIKLQKDV 237
           IA ++ L +  
Sbjct: 563 IAYVLSLMEKA 573



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 76/234 (32%), Gaps = 26/234 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           +I      ++++A+G+ +V  GD  +L TA  E         T    +T ++     + G
Sbjct: 43  DIQFETGHLARFADGAAVVSQGDNAILATAVGERD--SSSSTTSFLPLTVDFKQSAAAVG 100

Query: 72  ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
               N ++RE              R+I R++R +       + Q+I     +   G    
Sbjct: 101 RIPTNYLRREMQQSDAD---ILASRIIDRSIRPLFPEQYRDATQVICKPLCLDETGDGVV 157

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
             I  A  AL                +    G V A+   ++    +V+    E     +
Sbjct: 158 LGINAASTALA-------------VSNIPWNGPVGAVRVAIIDDRVVVNPARNELKRAKL 204

Query: 188 DANFVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +        G  ++ +   A     +            + +A +    + ++S 
Sbjct: 205 NMVLSGCGDGKRVLMIDMDA--CEVNAVKLDECFEAGLEAVARITAAIEKIVSE 256


>gi|298209020|ref|YP_003717199.1| putative polyribonucleotide nucleotidyltransferase [Croceibacter
           atlanticus HTCC2559]
 gi|83848947|gb|EAP86816.1| putative polyribonucleotide nucleotidyltransferase [Croceibacter
           atlanticus HTCC2559]
          Length = 741

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 85/245 (34%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKH 56
           +RL GR+   +R I           GS +   G+T  L T TL       +         
Sbjct: 317 LRLDGRKTTDIRPIWCEVDYLPSVHGSSIFTRGETQALATVTLGTSRDANMIDMPSYEGE 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG        S R+ G       +  RAL+ +V         + +  
Sbjct: 377 ERFYLHYNFPPFSTGEARPIRGTSRREVGHG----NLAQRALKGMVPED--CPYTVRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G +  A +    +A+ D    M+   +   +     G ++    G      + D
Sbjct: 431 EVLESNGSSSMATVCAGTMAMMDAGVQMKKPVSGIAM-----GLISDAESGKYA--VLSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I   Q   +    S +     L  A+D    +++   D
Sbjct: 484 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKVKGLSYEILVNALKQARDGRLHILEKLTD 542

Query: 237 VISNE 241
            IS  
Sbjct: 543 TISQP 547



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 76/227 (33%), Gaps = 26/227 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           REI++      K A GS +V+ G   LL T      +  V        +    A  G  P
Sbjct: 16  REITIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQSDVDFLPLTVDYREKFAAAGRYP 75

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KREA        +    R++ R LR +         Q++I       D     
Sbjct: 76  ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKDYHAETQVMIQLMSHDDD----- 124

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                    + D +  +   +         +  ++    G + G  +++    + +  D+
Sbjct: 125 --------VMPDAMAGLAASAAIQLSDFPFECAISEARVGRVNGEFVINPTRTQLAESDI 176

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D   +   +  ++ V+G  E    S++     +  A + I    + Q
Sbjct: 177 DM-MIGASADSVMMVEG--EMDEISEEEMTEAIKFAHEAIKVQCEAQ 220


>gi|227112579|ref|ZP_03826235.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 706

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 98/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELTGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 375 RFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKANEFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKSAVAGIAMGLVKEGDNFVV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISTP 544



 Score = 65.1 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 73/233 (31%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   +  + A  + +V   DT +  T       +     +     +   T   G  P 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLTVNYQERTYAAGRFP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR         R+I R +R +     L   Q+I     +         
Sbjct: 75  --GGFFRRE---GRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVSPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G +     G L    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGVARVGYLNDQYVLNPTMDELKESRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T+ G ++ V+  +E    S+D     +    ++    I ++  L  + 
Sbjct: 177 LVVAGTE-GAVLMVE--SEADLLSEDQMLGAVVFGHEQQQIVIQNINALVAEA 226


>gi|254437652|ref|ZP_05051146.1| 3' exoribonuclease family, domain 2 [Octadecabacter antarcticus
           307]
 gi|198253098|gb|EDY77412.1| 3' exoribonuclease family, domain 2 [Octadecabacter antarcticus
           307]
          Length = 710

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 96/248 (38%), Gaps = 27/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR+ +++R+I     +     GS L   G+T  L   TL       + ++  G    
Sbjct: 318 RIDGRKTDEIRDIVSETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDSLSGMYKS 377

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      ++  RAL++V+  +      I +  +
Sbjct: 378 NFMLHYNFPPYSVGEVGRFGFTGRREIGHG----KLAWRALQAVLPAATDFPYTIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGY-- 172
           + +++G +  A++ G  +++ D                 LK  VA ++ G++    G   
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLIMQDDGSYA 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T++G I  +Q   + A  +       L  AK     ++ 
Sbjct: 481 ILSDILGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITPAIMKEALAQAKVGRVHILG 539

Query: 233 LQKDVISN 240
                +S+
Sbjct: 540 EMNKALSS 547



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 83/233 (35%), Gaps = 37/233 (15%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+G+ +  +G+T ++   T     +     +     +G      G +P 
Sbjct: 16  LTLETGKVARQADGTVIATYGETTVMANVTFAKKQKPGQDFFPLTVHYGEKYYAAGKVP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++ C V+  D      
Sbjct: 75  --GGFFKREA---RPTEKETLTSRLIDRPIRPLFVEGF--KNEVLVICTVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG------ 180
             A+  A  AL                     G +AA   G   G  I++ +        
Sbjct: 128 MVAMIAASAALTISGA-------------PFMGPIAACRVGFEGGDYILNPEMDDMHKLR 174

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           E+    +D     T    ++ V+  +E    S++     +  A  +I  +I +
Sbjct: 175 ENPDQRLDLVVAGTKDA-VMMVE--SEAYELSEEEMLGAVEFAHAQIQPVIDM 224


>gi|195341759|ref|XP_002037473.1| GM12088 [Drosophila sechellia]
 gi|194131589|gb|EDW53632.1| GM12088 [Drosophila sechellia]
          Length = 485

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 90/250 (36%), Gaps = 17/250 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56
           +R  GR  +Q+R IS    + K   GS L + G T +  T +L+ +      ++      
Sbjct: 68  LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDS 127

Query: 57  GWITA-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           G + A      Y   P +TG   +     G  G R      +  R+L   +         
Sbjct: 128 GGLKAKNFMLHYEFPPYATGEVGR----IGPVGRRELGHGALAERSLLPTLPND--YPFT 181

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
           + +  +V++++G +  A++ G  +AL D    +   +    +  V K      +  +   
Sbjct: 182 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTK-FENDDTKHLQDY 240

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G    +Q   +            L  A D  + ++
Sbjct: 241 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSKIL 299

Query: 232 KLQKDVISNE 241
            +  + I   
Sbjct: 300 DIMSEAIREP 309


>gi|328777663|ref|XP_395806.4| PREDICTED: exosome complex exonuclease RRP41-like isoform 2 [Apis
           mellifera]
          Length = 210

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 72/186 (38%), Gaps = 17/186 (9%)

Query: 64  GMLPRS--TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            M   S  +G R ++     R   +SQE    +  A+ +++ L      QI I  + +Q 
Sbjct: 22  SMAVFSLSSGERKRKP----RGDRKSQERSLQLKHAMEAIIHLELYPRSQIDIYVEALQV 77

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DG    A++  A +AL D    +++ +    ++ +    +      +  G  ++D +Y E
Sbjct: 78  DGSEYCASVNAATLALIDAGIPIKNYAIGCTVTLINCPSLEDEDNTLEKG--VLDANYVE 135

Query: 182 DSTIDVDANFV-------MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           +    V  + V       ++  G IV  QG+ +R   SQ        L      D+  + 
Sbjct: 136 ECAPGVTLSVVALPNSDGISKDGLIVVAQGAGQRLHLSQFESLKARVLC--GCQDIKTIL 193

Query: 235 KDVISN 240
              +  
Sbjct: 194 DHAVRQ 199


>gi|227327831|ref|ZP_03831855.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 706

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 98/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELTGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 375 RFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKANEFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKSAVAGIAMGLVKEGDNFVV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISTP 544



 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 73/233 (31%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   +  + A  + +V   DT +  T       +     +     +   T   G  P 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKSAKPGQSFFPLTVNYQERTYAAGRFP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR         R+I R +R +     L   Q+I     +         
Sbjct: 75  --GGFFRRE---GRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVSPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G +     G L    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGVARVGYLNDQYVLNPTMDELKESRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T+ G ++ V+  AE    S+D     +    ++    I ++  L  + 
Sbjct: 177 LVVAGTE-GAVLMVESEAE--LLSEDQMLGAVVFGHEQQQIVIQNINALVAEA 226


>gi|163790856|ref|ZP_02185281.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp. AT7]
 gi|159873924|gb|EDP68003.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp. AT7]
          Length = 702

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 89/249 (35%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +   A GS L   G T  L+ AT     E ++   +     
Sbjct: 318 IRPDGRKIDEIRSLASEIGLLPRAHGSGLFTRGQTQALSVATLAPLGEHQIIDGLGVENS 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+       S   G R      +  RAL  V+         I +  
Sbjct: 378 KRFIHHYNFPQYSVGS----TGPSRGPGRREIGHGALGERALSQVIPSEEDFPYMIRLVA 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVKEGENYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      L  AK    +++ 
Sbjct: 481 VLTDIQGLEDHLGDMDFKVAGTSKG-ITALQMDIKIEGITEQILEEALIQAKKARMEILN 539

Query: 233 LQKDVISNE 241
                I+  
Sbjct: 540 ELTSTIAEP 548



 Score = 82.4 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 94/233 (40%), Gaps = 28/233 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ L+++ DT +L+ A   +K   V  +     +       G +P
Sbjct: 14  RTLTIEVGQLAKQANGATLIRYNDTVVLSAAVASKKAKDVDFFPLTVNYDEKMYSVGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KREA   R    +    R+I R +R +         QI      +  +     
Sbjct: 74  ---GGFIKREA---RPSEYATLTARLIDRPIRPMFAEGFRNEVQITNTVMSVDQNCSPAF 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           +A+ G+ ++L                     G +A++  G + G  I++    +++  D+
Sbjct: 128 SAMFGSSLSLA-------------ISDIPFNGPIASVDVGRVDGEYIINPTVEQEALSDI 174

Query: 188 DANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                 T    ++VE  G+AE    S++     L      I +L+  Q+++++
Sbjct: 175 HLTVAGTKDAINMVE-SGAAE---VSEEDMLGALMFGHRAIQELVAFQEEIVA 223


>gi|255319690|ref|ZP_05360898.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           radioresistens SK82]
 gi|262380027|ref|ZP_06073182.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           radioresistens SH164]
 gi|255303219|gb|EET82428.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           radioresistens SK82]
 gi|262298221|gb|EEY86135.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           radioresistens SH164]
          Length = 699

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 94/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR    +R + +   V + A GS L   G+T  L TATL       +      TK  
Sbjct: 317 RIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTATLGNTRDALMVDTLSGTKTD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +      R+ G      R+  R +++V+         + +  D
Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPPVDRFPYVLRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA +AL D                 LK  VA I+ G++  G     
Sbjct: 433 ITESNGSSSMASVCGASLALMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G I  +Q   +    +++     LN A      ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFTGRMHILNE 538

Query: 234 QKDVIS 239
              VIS
Sbjct: 539 MNKVIS 544



 Score = 78.6 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 78/237 (32%), Gaps = 43/237 (18%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           ++ L    V++ A  S L+  G   +L         P          +T  Y     + G
Sbjct: 17  QVVLETGRVARQAN-SVLITMGGVSVLVAVV---AQPTAKAGQDFFPLTVNYQEKQYAAG 72

Query: 72  NRVKREAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDC----DVIQADG 123
              +     G++ GR+ E    I R+I R +R +         Q+          + AD 
Sbjct: 73  ---RIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYYNEIQVTATVVSSDKTMDAD- 128

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
               AA+ G   AL                    +G +A    G++ G  I++ ++ +  
Sbjct: 129 ---IAAMLGTSAALSIAGT-------------PFRGPIAGARVGLINGEYILNPNHEQLK 172

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233
             D+D     T++  ++     +E    S+D            + +A   I +    
Sbjct: 173 ESDLDLVVAGTETAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAA 226


>gi|210622620|ref|ZP_03293280.1| hypothetical protein CLOHIR_01228 [Clostridium hiranonis DSM 13275]
 gi|210154121|gb|EEA85127.1| hypothetical protein CLOHIR_01228 [Clostridium hiranonis DSM 13275]
          Length = 695

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPM--WIRNTKH 56
           +R   R+ N++R I     +     GS +   G T ++  ATL     V     +   ++
Sbjct: 316 VRPDNRKYNEIRPIWCETGMIPRTHGSAIFTRGQTQVMNIATLGALGDVQKLDGLDEEEN 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         I +  
Sbjct: 376 KRYMHHYNFPAYSVGEARPSRGPGRREIGHG----ALAERALLPVIPSQEDFPYAIRLVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           +V+ ++G T  A++  + ++L D                 +K  VA I+ G++       
Sbjct: 432 EVLSSNGSTSQASVCASTLSLLDAGV-------------PIKDMVAGIAMGLIKHHDKVV 478

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T+ G I  +Q   +     +D     L  A++    ++ 
Sbjct: 479 VLSDIQGMEDHLGDMDFKVAGTEHG-ITAIQMDIKIDGIDEDILRRALAQAREGRMHILG 537

Query: 233 LQKDVISNE 241
             + VIS  
Sbjct: 538 EMRKVISEP 546



 Score = 82.8 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 92/234 (39%), Gaps = 27/234 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKHGWITAEYGML 66
           RE+S+      +   G+C+VK+GD+ ++     +A   + +  +  +  +       G +
Sbjct: 14  RELSVEVGKICEMTNGNCIVKYGDSVVMVNTTKSAEPRDGIDFFPLSVDYEEKLYSVGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R +R +         Q++     +  D    
Sbjct: 74  P---GGFLKRE---GKPSEKAILTSRLIDRPIRPLFPKGFRNDVQVVATVLSVDQDCTPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ VAL                     G   ++  G++ G  +V+ +  +    +
Sbjct: 128 IVAMIGSSVALS-------------ISDIPFNGPTGSVCIGLVDGEFVVNPNAEQREKSE 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    I+ V+  A+    S+D     +  A + I  +++  +++++ 
Sbjct: 175 MHLVVSGTKDA-IMMVEAGAQE--VSEDTMLKAILFAHEHIKKIVEFIEEIVAG 225


>gi|163734274|ref|ZP_02141714.1| polyribonucleotide nucleotidyltransferase [Roseobacter litoralis
           Och 149]
 gi|161392282|gb|EDQ16611.1| polyribonucleotide nucleotidyltransferase [Roseobacter litoralis
           Och 149]
          Length = 711

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 27/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +++R+I     +     GS L   G+T  L   TL         +  HG   +
Sbjct: 318 RIDGRKTDEIRDIVSETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+  +      + +  +
Sbjct: 378 NFLLHYNFPPYSVGEAGR----VGPPGRREIGHGKLAWRALQAVLPAATDFPYTVRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           + +++G +  A++ G  +++ D                 LK  VA ++ G++        
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEEDGSYA 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T++G I  +Q   + A  + +     L  AK     ++ 
Sbjct: 481 ILSDILGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITPEIMEKALEQAKAGRIHILG 539

Query: 233 LQKDVI 238
                I
Sbjct: 540 EMAKAI 545



 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 78/234 (33%), Gaps = 39/234 (16%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+GS +   G+T ++   T     +     +     +       G +P 
Sbjct: 16  LTLETGKVARQADGSVIATLGETSVMANVTFAKKQKPGQDFFPLTVHYQEKYYAAGKVP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R LR +         ++++ C V+  D      
Sbjct: 75  --GGFFKREA---RPTEKETLTARLIDRPLRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                     G +A    G   G  +++     D   D
Sbjct: 128 MVAMIAASAALTISGA-------------PFMGPIAGCRVGYEGGEYVLNPTV--DDMQD 172

Query: 187 VDAN-------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +  N        V      ++ V+  +E    S+      +  A D I  ++ L
Sbjct: 173 LRLNPEQRLDLVVAGTKDAVMMVE--SEAYELSEAEMLGAVKFAHDAIQPVLDL 224


>gi|261820132|ref|YP_003258238.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium wasabiae
           WPP163]
 gi|261604145|gb|ACX86631.1| polyribonucleotide nucleotidyltransferase [Pectobacterium wasabiae
           WPP163]
          Length = 706

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 98/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQTIDELTGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 375 RFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKANEFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKSAVAGIAMGLVKEGDNFVV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISTP 544



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 67/212 (31%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   +  + A  + +V   DT +  T       +     +     +   T   G  P 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLTVNYQERTYAAGRFP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR       I R+I R +R +     L   Q+I     +         
Sbjct: 75  --GGFFRRE---GRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G L    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFSGPIGAARVGYLNDQYVLNPTTDELKESRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T  G ++ V+  AE    S+D     +
Sbjct: 177 LVVAGTQ-GAVLMVESEAE--VLSEDQMLGAV 205


>gi|227824076|ref|YP_002828049.1| polynucleotide phosphorylase/polyadenylase [Sinorhizobium fredii
           NGR234]
 gi|254782732|sp|C3MC71|PNP_RHISN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|227343078|gb|ACP27296.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii
           NGR234]
          Length = 717

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 317 RIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++  +      + +  +
Sbjct: 377 RFMLHYNFPPFSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  + +    A+         + D+
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAV---------LSDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   +    +++     LN AK     ++      
Sbjct: 484 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIEGITEEIMGIALNQAKGGRLHILGEMAKA 542

Query: 238 ISN 240
           IS 
Sbjct: 543 ISE 545



 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 74/229 (32%), Gaps = 31/229 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ L  +G+T +L T       +     +     +   T   G +
Sbjct: 14  RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR       + R+I R +R +         Q+I+   V+Q D    
Sbjct: 74  P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFPDGYKNDTQVIVT--VMQHDLENN 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++  A  AL                     G +     G + G  +++    E   
Sbjct: 126 PDVVSMVAASAALTLSGI-------------PFMGPIGGARVGYINGEYVLNPHLDEMDE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
             +D     T    ++     +E     +D     +   +     +I  
Sbjct: 173 SSLDLVVAGTQEAVLMV---ESEAKELPEDVMLGAVVFGQQGFQPVIDA 218


>gi|253686990|ref|YP_003016180.1| Polyribonucleotide nucleotidyltransferase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|259534139|sp|C6DKK7|PNP_PECCP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|251753568|gb|ACT11644.1| Polyribonucleotide nucleotidyltransferase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 706

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 99/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQTIDELTGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+  ++     + +  +
Sbjct: 375 RFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKASEFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKSAVAGIAMGLVKEGDNFVV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISTP 544



 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 68/212 (32%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   +  + A  + +V   DT +  T       +     +     +   T   G  P 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLTVNYQERTYAAGRFP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR       I R+I R +R +     L   Q+I     +         
Sbjct: 75  --GGFFRRE---GRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G L    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFSGPIGAARVGYLNDQYVLNPTTDELKESRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T+ G ++ V+  +E    S+D     +
Sbjct: 177 LVVAGTE-GAVLMVE--SEADLLSEDQMLGAV 205


>gi|126696730|ref|YP_001091616.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9301]
 gi|187610309|sp|A3PE40|PNP_PROM0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|126543773|gb|ABO18015.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. MIT 9301]
          Length = 721

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 98/238 (41%), Gaps = 36/238 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66
           REI LT    +  A GS +++ GDT LL TAT   K       +    +  +Y       
Sbjct: 13  REIRLTTGLYAPQANGSVMIECGDTSLLVTATKTTK----KEVSDFLPLICDYEEKLYAA 68

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----AD 122
            R  G  ++RE   GR   R+  I R+I R +R +         QI+  C  +     AD
Sbjct: 69  GRIPGGFMRRE---GRPPERATLISRLIDRPMRPLFPSWMRDEIQIVASCLSLDERVPAD 125

Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
                 A+TGA +A                      G +AA+  G++    I++  Y E 
Sbjct: 126 ----ILAVTGASIA-------------TLLGEIPFYGPMAAVRVGLIGDDFILNPSYREI 168

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
              D+D     +  G IV ++  A +   S+      ++   + +++LIK Q+D++ +
Sbjct: 169 EKGDLDIVVAGSKEG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVSELIKSQEDLLKD 223



 Score = 94.8 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 93/252 (36%), Gaps = 33/252 (13%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R+ GR  +++R+IS +  +  K   GS L + G T +L+T TL    P   +       +
Sbjct: 323 RVDGRDLDEVRKISASAGILPKRVHGSALFQRGLTQVLSTTTL--GTPSDAQEMDDLNPS 380

Query: 61  AE------YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            E      Y   P S G  R  R       G R      +  RA+  V+         + 
Sbjct: 381 TEKTYLHHYNFPPYSVGETRPMRT-----PGRREIGHGALAERAIIPVLPGKETFPYVLR 435

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-- 171
           +  +V+ ++G T   ++ G+ ++L D                 LK  V+  + G++    
Sbjct: 436 VVSEVLSSNGSTSMGSVCGSTLSLLDAGV-------------PLKAPVSGTAMGLIKEGK 482

Query: 172 --YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED   D+D     TD G I  +Q   +            +  A+     
Sbjct: 483 EVRILTDIQGIEDFLGDMDFKVAGTDKG-ITALQMDMKITGLPVSIISDAIKKARPARLH 541

Query: 230 LIKLQKDVISNE 241
           +++  ++ I   
Sbjct: 542 ILEKMQEAIEKP 553


>gi|86606857|ref|YP_475620.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           JA-3-3Ab]
 gi|123504388|sp|Q2JQF4|PNP_SYNJA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|86555399|gb|ABD00357.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           JA-3-3Ab]
          Length = 712

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 89/246 (36%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           +R+ GR+ +++R +S    +     GS L   G T +L+  TL           +     
Sbjct: 321 VRVDGRKLDEVRPVSCRVGLIPRVHGSALFNRGLTQVLSITTLGTPGDAQELDDLHPVDE 380

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      +   R+ G       +  RAL  V+         + +  
Sbjct: 381 KRYMHHYNFPGFSVGEVRPSRSPGRREIGHG----ALAERALVPVLPKEEEFPYVVRVVS 436

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V+ ++G T  A++ G+ ++L D                 +K  V+ ++ G++       
Sbjct: 437 EVLSSNGSTSMASVCGSTLSLMDAGV-------------PIKAPVSGVAMGLIKEGDEVR 483

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I  +Q   +    + D     L  AK     ++ 
Sbjct: 484 ILTDIQGIEDFLGDMDFKVAGTRAG-ITALQMDMKITGITVDVVEKALLQAKAGRDYILD 542

Query: 233 LQKDVI 238
              +V+
Sbjct: 543 KMLEVL 548



 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 84/233 (36%), Gaps = 26/233 (11%)

Query: 12  REISLTRRVSKYAEGS-CLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           REI +   +     G    +  G+T +L TAT       V        +       G +P
Sbjct: 13  REIDINIGLMAPQAGCGVWLTSGETSVLVTATRQAGRAGVDFLPLLVDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   GR   R+  I R+I R LR +         QI+     +        
Sbjct: 73  ---GGYLRRE---GRPPERATLISRLIDRPLRPLFPEWLRDDVQIVATTLSVDDKVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
             I GA +A+H                    G VAA+  G++    I++  Y E    D+
Sbjct: 127 LCILGASLAIHSA-------------RIPFNGPVAAVRVGLVKDEFIINPTYAEIEAGDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D        G ++ V+  A +    +      +    + + +L+K Q+ V ++
Sbjct: 174 DLVVAGCADG-VIMVEAGANQ--LPEKDVVEAIEFGFEAVQELLKAQQQVFAD 223


>gi|56698213|ref|YP_168585.1| polynucleotide phosphorylase/polyadenylase [Ruegeria pomeroyi
           DSS-3]
 gi|81348968|sp|Q5LN23|PNP_SILPO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56679950|gb|AAV96616.1| polyribonucleotide nucleotidyltransferase [Ruegeria pomeroyi DSS-3]
          Length = 714

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 90/243 (37%), Gaps = 17/243 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I     +     GS L   G+T  L   TL         +  HG   +
Sbjct: 318 RIDGRDTTTVRPIVAETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+         I +  +
Sbjct: 378 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +++ D    ++       +  +L+   +           + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLILEDDGSYA--------VLTDI 485

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   + A  + +     L+ AKD    ++      
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKALSQAKDGRMHILAEMNKA 544

Query: 238 ISN 240
           +S 
Sbjct: 545 LSG 547



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 78/234 (33%), Gaps = 39/234 (16%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70
           ++L    +++ A+GS +   G+T ++   T   +            +T  Y     +   
Sbjct: 16  LTLESGKIARQADGSVVATLGETRVMANVTFAREQKP---GQDFFPLTVHYQEKYYAAGK 72

Query: 71  --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++ C V+  D      
Sbjct: 73  VPGGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                     G +A    G + G  +++     D   D
Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIAGCRVGYVDGEYVLNPTV--DDMQD 172

Query: 187 VDAN-------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +  N        V      ++ V+  +E    ++      +  A  +I  ++ L
Sbjct: 173 LRLNPEQRLDLVVAGTKDAVMMVE--SEAYELTEAEMLGAVTFAHAQIQPVVDL 224


>gi|259907046|ref|YP_002647402.1| polynucleotide phosphorylase/polyadenylase [Erwinia pyrifoliae
           Ep1/96]
 gi|224962668|emb|CAX54123.1| Polyribonucleotide nucleotidyltransferase [Erwinia pyrifoliae
           Ep1/96]
          Length = 732

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 94/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 337 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGERTD 396

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 397 NFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKGDAFPYTVRVVSE 452

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 453 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKDDNNFVV 499

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 500 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILSV 558

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 559 MEQAISGP 566



 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 57/187 (30%), Gaps = 24/187 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 38  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKP---GQDFFPLTVNYQERTYAAGR 94

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR         R+I R +R +     +   Q+I     +         
Sbjct: 95  IPGSFFRRE---GRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 151

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G L    +++    E     +D
Sbjct: 152 AMIGASAALALSGL-------------PFNGPIGAARVGYLNDQYVLNPTSDELKESKLD 198

Query: 189 ANFVMTD 195
                T 
Sbjct: 199 LVVAGTK 205


>gi|303239217|ref|ZP_07325746.1| polyribonucleotide nucleotidyltransferase [Acetivibrio
           cellulolyticus CD2]
 gi|302593262|gb|EFL62981.1| polyribonucleotide nucleotidyltransferase [Acetivibrio
           cellulolyticus CD2]
          Length = 703

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 89/239 (37%), Gaps = 23/239 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +++R +S    +     GS L + G T +LT  TL     + + +      T 
Sbjct: 312 RVDGRRLDEIRPLSADVGLLPRVHGSGLFQRGQTQVLTIVTLGALGDVQVLDGIELEETK 371

Query: 62  EYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            Y M   +       EA + R  G R      +  RAL  V+         + +  +V+ 
Sbjct: 372 RY-MHHYNFPGYSVGEAKTSRGPGRREIGHGALAERALEPVIPSQEEFPYTMRLVSEVLM 430

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-------P 173
           ++G T   ++ G+ +AL D                 +K  VA IS G++           
Sbjct: 431 SNGSTSQGSVCGSTLALMDAGV-------------PIKKPVAGISAGLVVDEDEPGRFVT 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            +D+   ED   D+D     T  G I  +Q   +    +++       L +     +I 
Sbjct: 478 FMDIQGIEDFFGDMDFKVAGTKDG-ITAIQVDIKVDGLTEEIVEQAFELTRKGRLQIID 535



 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 80/228 (35%), Gaps = 30/228 (13%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYGML 66
           R + +        + GS +V++GDT +L     +A   E +  +  +  +       G +
Sbjct: 12  RTLVIETGKLAQLSNGSVMVRYGDTVVLSNATASAKPREGIDFFPLSVDYEERLYSVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R LR +          ++     +  D    
Sbjct: 72  P---GGFIKRE---GKPSEKAILTSRVIDRPLRPLFPKDLRNDVALVNTVMSVDQDNSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA +AL                     G V  +  G++ G  +++ D  +     
Sbjct: 126 VAALLGASMALS-------------ISDIPFNGPVGGVILGLVDGKVVINPDAKQREKSQ 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           +      T    IV ++  A            ML+  +    ++ K+ 
Sbjct: 173 MYVTLAATRE-KIVMIEAGANEVP-----DDVMLDAIRQGHQEIRKIC 214


>gi|195575304|ref|XP_002105619.1| GD16436 [Drosophila simulans]
 gi|194201546|gb|EDX15122.1| GD16436 [Drosophila simulans]
          Length = 771

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 90/250 (36%), Gaps = 17/250 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56
           +R  GR  +Q+R IS    + K   GS L + G T +  T +L+ +      ++      
Sbjct: 354 LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDS 413

Query: 57  GWITA-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           G + A      Y   P +TG   +     G  G R      +  R+L   +         
Sbjct: 414 GGLKAKNFMLHYEFPPYATGEVGR----IGPVGRRELGHGALAERSLLPTLPND--YPFT 467

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
           + +  +V++++G +  A++ G  +AL D    +   +    +  V K      +  +   
Sbjct: 468 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTK-FENDDTKHLEDY 526

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G    +Q   +            L  A D  + ++
Sbjct: 527 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSKIL 585

Query: 232 KLQKDVISNE 241
            +  + I   
Sbjct: 586 DIMSEAIREP 595



 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 90/234 (38%), Gaps = 30/234 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--ITAEYGMLPR 68
           R ++ +   ++++A G+ + + GDT ++ TA     V     N   G+  +  +Y +   
Sbjct: 50  RNMTFSSGRLARFANGTAVCQMGDTAVMVTA-----VAKTKPNPGQGFMPLVVDYRLKNA 104

Query: 69  STGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           ++G R+    +    G   +EI   R+I R+LR +         Q++ +   + A     
Sbjct: 105 ASG-RIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVHSPD 163

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI  A +AL                     G + A+  G+  G  +++    E  T  
Sbjct: 164 VLAINAASMALS-------------LSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQ 210

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN----LAKDRIADLIKLQKD 236
           +D     T    +V ++G  +     Q      +      A+  I ++ +LQK 
Sbjct: 211 LDLVVSATKQNLVVMLEG--KGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKA 262


>gi|163787538|ref|ZP_02181985.1| putative polyribonucleotide nucleotidyltransferase
           [Flavobacteriales bacterium ALC-1]
 gi|159877426|gb|EDP71483.1| putative polyribonucleotide nucleotidyltransferase
           [Flavobacteriales bacterium ALC-1]
          Length = 751

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 83/245 (33%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKH 56
           +RL GR+  ++R I           GS +   G+T  L T TL                 
Sbjct: 317 LRLDGRKTTEIRPIWCEVDYLPSTHGSSVFTRGETQALATVTLGTSRDANQIDMPSQEGE 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P  TG        S R+ G       +  RAL+ +V         + +  
Sbjct: 377 ERFYLHYNFPPFCTGEARPIRGTSRREVGHG----NLAQRALKGMVPDD--CPYTVRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G +  A +    +A+ D    M    +   +     G ++    G      + D
Sbjct: 431 EVLESNGSSSMATVCAGTMAMMDAGVQMTKPVSGIAM-----GLISDADSGKYA--VLSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I   Q   +    S +     L  A+D    +++   D
Sbjct: 484 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKVKGLSYEILVNALQQARDGRLHILEKLTD 542

Query: 237 VISNE 241
            I+  
Sbjct: 543 TIAQP 547



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 78/227 (34%), Gaps = 26/227 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           REIS+      K A GS +V+ G   LL T      ++ V        +    A  G  P
Sbjct: 16  REISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKDVNFLPLTVDYREKFAAAGRYP 75

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KREA        +    R++ R LR +         Q++I   ++  D     
Sbjct: 76  ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKDYHSETQVMI--QLMSHD----- 122

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                    + D +  +   +         +  ++    G + G  I++  + +    D+
Sbjct: 123 ------PEVMPDAMAGLAASAAIQLSDFPFECPISEARVGRINGEFIINPTFAQLEESDI 176

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D   +   +  ++ V+G  E    S++     +  A + I      Q
Sbjct: 177 DM-MIGASADSVMMVEG--EMDEISEEEMADAIKFAHEHIKVQCAAQ 220


>gi|332993351|gb|AEF03406.1| polynucleotide phosphorylase/polyadenylase [Alteromonas sp. SN2]
          Length = 703

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 91/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR    +R + +   +     GS +   G+T  +  ATL  +    +    +  +  
Sbjct: 314 RIDGRDPKMIRALDVATGILPRTHGSAVFTRGETQAIVAATLGTERDAQMIDELQGRRDS 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R +++V+         + I  +
Sbjct: 374 RFMLHYNFPPYCVGETGMIGSPKRREIGHG----RLAKRGIQAVMPSEEEFPYVVRIVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKSDENFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     L  AK+    ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGT-TGGITALQMDIKIEGITKEIMQIALKQAKEARLHILNV 535

Query: 234 QKDVISNE 241
             + I   
Sbjct: 536 MDEAIGGH 543



 Score = 72.8 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 81/232 (34%), Gaps = 27/232 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +    DT +L T   +++       +     +   T   G +P 
Sbjct: 15  VTLETGVIARQATAAVMASMDDTAVLVTVVGKKEAKADQDFFPLTVNYQEKTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +         Q++I       D  T   
Sbjct: 74  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPEGFKNEVQVVITVMSANPDIPTDII 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G   G  I++    E +  D+D
Sbjct: 129 SMIGTSAALAISGI-------------PFNGPIGAARVGYTDGEYILNTRVEEQADSDLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                T+ G ++ V+  +E    S+D     +    +++  ++   K+  +N
Sbjct: 176 LVVAGTE-GAVLMVE--SEADVLSEDVMLGAVMFGHEQLQTVVTAVKEFAAN 224


>gi|296533820|ref|ZP_06896357.1| polyribonucleotide nucleotidyltransferase [Roseomonas cervicalis
           ATCC 49957]
 gi|296265856|gb|EFH11944.1| polyribonucleotide nucleotidyltransferase [Roseomonas cervicalis
           ATCC 49957]
          Length = 735

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 82/234 (35%), Gaps = 26/234 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR    +R I     V   A GS L   G+T  L  ATL       I +   G   
Sbjct: 312 LRIDGRDTKTVRPIMAEVGVLPRAHGSALFTRGETQALAVATLGTGQDEQIIDQLAGEYR 371

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S     +     G  G R     ++  RA+  ++         + +  
Sbjct: 372 ENFMLHYNFPPYSVNETGR----MGSPGRREIGHGKLAWRAIHPLLPEKEKFPYTMRVVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++ +++G +  A + G  ++L D                 LK   A I+ G++       
Sbjct: 428 EITESNGSSSMATVCGTSLSLMDAGV-------------PLKRPCAGIAMGLIKEEKGFA 474

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED   D+D     T+ G I  +Q   +  + + +     L  AK  
Sbjct: 475 VLSDILGDEDHLGDMDFKVAGTEQG-ITALQMDIKITSITPEIMKIALEQAKGG 527



 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 74/233 (31%), Gaps = 31/233 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L    V++ A+G+ + + GDT +L T      V           +T  Y     + G 
Sbjct: 17  LTLETGKVARQADGAVMARLGDTIVLCTVVGARSVKP---GQDFFPLTVNYQEKAFAAGK 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR       I R+I R +R +         Q+I        +      
Sbjct: 74  IPGGFFKRE---GRPSEAETLISRLIDRPIRPLFPEGFRNEVQVIATVLSHDMENSPDIV 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G   AL                     G V A     + G  +++    +     +D
Sbjct: 131 ALVGCSAALTLSGI-------------PFFGPVGAARVAYIDGQYVLNPTLEQMKNTQLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T  G ++     +E +  +++     +          I  +I+L +  
Sbjct: 178 LVVAGTAEGVLMV---ESEASELTEEVMLGAVTFGHQSFQPVIEGIIELAEKA 227


>gi|62531249|gb|AAH92603.1| Pnpt1 protein [Rattus norvegicus]
          Length = 452

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 90/249 (36%), Gaps = 19/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R IS    + K   GS L + G T +L T T +        +++   I  
Sbjct: 26  RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 85

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   V+ R+ G       +  +AL  V+         I 
Sbjct: 86  VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHG----ALAEKALCPVIPKDF--PFTIR 139

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  V K +      G +  Y 
Sbjct: 140 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKSNPEK---GEIEDYR 196

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T+ G I  +Q   +            +  A     ++++
Sbjct: 197 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGVPVKIIMEAIQQATVAKREILQ 255

Query: 233 LQKDVISNE 241
                IS  
Sbjct: 256 TMSKTISKP 264


>gi|90422008|ref|YP_530378.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
           palustris BisB18]
 gi|122477503|sp|Q21C27|PNP_RHOPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|90104022|gb|ABD86059.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris BisB18]
          Length = 715

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 92/243 (37%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     V   A GS L   G+T  L   TL         ++  G    
Sbjct: 316 RIDGRDSKTVRNIVAQVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDSLSGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      ++  RA+  V+         + +  +
Sbjct: 376 TFLLHYNFPPYSVGETGRMGGTKRREIGHG----KLAWRAIHPVLPPHHEFPYTLRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    ++  +    +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   + A  +++     L  AKD    ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTEQG-ITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSKA 541

Query: 238 ISN 240
           ++N
Sbjct: 542 LTN 544



 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 79/235 (33%), Gaps = 36/235 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ +  +G+T +L T     + +E V        +   T   G +
Sbjct: 14  RPLKLETGKIARQADGAVVATYGETVVLATVVAAKSAKEGVDFLPLTVDYIEKTYAAGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +   + R+I R +R +         Q+I+       +    
Sbjct: 74  P---GGYFKRE---GRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSHDMENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  +  AL                    KG + A   G +    +++    E     
Sbjct: 128 ILALVASSAALTLSGA-------------PFKGPIGAARVGFINDEYVLNPTLDEMVDTQ 174

Query: 187 VDANFVMTDSGHIV------EVQGSAERAT--FSQDHF----FAMLNLAKDRIAD 229
           +D     T    ++      E+          F   HF     A++ LA+    +
Sbjct: 175 LDLVVAGTADAVLMVESEAKELNEDIMLGAVMFGHRHFQPVVQAIIELAEKAAKE 229


>gi|283476842|emb|CAY72680.1| polyribonucleotide nucleotidyltransferase [Erwinia pyrifoliae DSM
           12163]
          Length = 738

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 94/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 343 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGERTD 402

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 403 NFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKGDAFPYTVRVVSE 458

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 459 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKDDNNFVV 505

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 506 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILSV 564

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 565 MEQAISGP 572



 Score = 61.6 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 57/187 (30%), Gaps = 24/187 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 44  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKP---GQDFFPLTVNYQERTYAAGR 100

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR         R+I R +R +     +   Q+I     +         
Sbjct: 101 IPGSFFRRE---GRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 157

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G L    +++    E     +D
Sbjct: 158 AMIGASAALALSGL-------------PFNGPIGAARVGYLNDQYVLNPTSDELKESKLD 204

Query: 189 ANFVMTD 195
                T 
Sbjct: 205 LVVAGTK 211


>gi|212543511|ref|XP_002151910.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
           putative [Penicillium marneffei ATCC 18224]
 gi|210066817|gb|EEA20910.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
           putative [Penicillium marneffei ATCC 18224]
          Length = 283

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 59/144 (40%), Gaps = 3/144 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ N++R +      +  + GS  +  G+T ++ T     +      +     + 
Sbjct: 14  LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTSIMCTVHGPHETSGAGSSATEAVVD 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +  +   +  +R +R   S RQ   S ++   +  A +S +  S      I +   V+ 
Sbjct: 74  VDVNIAGFAGVDRKRRAGGSDRQ---STQLSTALKSAFQSHLHTSLYPHSTITVQVSVLS 130

Query: 121 ADGGTRTAAITGAWVALHDCLQHM 144
           +DG    AAI    +AL D    M
Sbjct: 131 SDGSLFAAAINACTLALVDAGIPM 154


>gi|21231940|ref|NP_637857.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66767933|ref|YP_242695.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|81306090|sp|Q4UW98|PNP_XANC8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81793552|sp|Q8P7V1|PNP_XANCP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|21113669|gb|AAM41781.1| polynucleotide phosphorylase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573265|gb|AAY48675.1| polynucleotide phosphorylase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 704

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 91/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR  + +R IS+   V     GS L   G+T  +   TL       + +   G   
Sbjct: 315 VRIDGRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTARDGQVIDAVAGEYK 374

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  A   R+ G      R+  R + +V+         I +  
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHG----RLAKRGVLAVMPSLEEFPYTIRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEDDRFV 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  AK     ++ 
Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILG 536

Query: 233 LQKDVISNE 241
                ++  
Sbjct: 537 EMSKALTTP 545



 Score = 75.5 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 79/228 (34%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A G+ +VK  DT LL TA    T  E    +     +       G +P 
Sbjct: 15  VTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTVDYQEKFYAGGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +   I R+I R +R +         QII     +  D     A
Sbjct: 74  --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G   G  I++    E     ++
Sbjct: 129 ALIGASAALSLAGT-------------PFNGPIGAAKVGYKNGEYILNPTITELKDSQLE 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T +  ++     +E A  S++     +      +  +I +  +
Sbjct: 176 LVVAGTANAVLMV---ESEAALLSEEVMLGAVTFGHREMQKVINIINE 220


>gi|294624709|ref|ZP_06703376.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665176|ref|ZP_06730476.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292600982|gb|EFF45052.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292605040|gb|EFF48391.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 704

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 91/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR  + +R IS T  V     GS L   G+T  +   TL       + +   G   
Sbjct: 315 VRIDGRALDTVRPISATAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAVSGEYK 374

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  A   R+ G      R+  R + +V+         I +  
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHG----RLAKRGVLAVMPTLEEFPYTIRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PIKAPVAGIAMGLVKEGNDFV 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  AK     ++ 
Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILG 536

Query: 233 LQKDVISNE 241
                ++  
Sbjct: 537 EMAHALTTP 545



 Score = 75.5 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 88/258 (34%), Gaps = 48/258 (18%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ +VKF DT LL TA    +  E    +     +       G +P 
Sbjct: 15  VTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +   I R+I R +R +         QII     +  D     A
Sbjct: 74  --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                    KG + A   G   G  I++    E     ++
Sbjct: 129 ALIGASAALSLAGT-------------PFKGPIGAAKVGYKNGEYILNPTVTELKDSQLE 175

Query: 189 ANFVMTDSGHIV---EVQGSAER-----ATFSQDHFFAMLN----------------LAK 224
                T +  ++   E    +E       TF       ++N                +A 
Sbjct: 176 LVVAGTANAVLMVESEADLLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPSDWVAP 235

Query: 225 DRIADLIKLQKDVISNEV 242
            +   +I   K+ + +++
Sbjct: 236 AKNDGMIAALKEAVGDQL 253


>gi|149411987|ref|XP_001513016.1| PREDICTED: similar to polymyositis/scleroderma autoantigen 1
           [Ornithorhynchus anatinus]
          Length = 439

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 97/260 (37%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   + E   P   R T+ G +  
Sbjct: 23  RLDGRQIYDYRNIKISFG-TDY--GCCIVELGKTRVLGQVSCELVAPKLNRATE-GILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   ++          GRQ     ++ R++ R LR    VD  +L    G +  QI 
Sbjct: 79  NLELSQMASPA-----FEPGRQSDLLVKLNRLLERCLRNSKCVDTESLCVIAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  V+  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHVLNHDGNILDAASIAAIVALCHFRRPDVSVQGDEITLYTPEERDPVPLSIHHMPIY 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD    E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFLQGAYLLVDPSEREERVMDGLMVIAMNKHREICTIQSSG-GVMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L +  + N+
Sbjct: 253 IAGVKVAEITELIQKALEND 272


>gi|300854507|ref|YP_003779491.1| polyribonucleotide nucleotidyltransferase [Clostridium ljungdahlii
           DSM 13528]
 gi|300434622|gb|ADK14389.1| polyribonucleotide nucleotidyltransferase [Clostridium ljungdahlii
           DSM 13528]
          Length = 717

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 86/229 (37%), Gaps = 16/229 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           R+ GR  +++R IS    +     G+ L   G T ++T ATL     + I +     +  
Sbjct: 315 RVDGRAFDEIRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGSLGDVQILDGVGSEESK 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     STG          R+ G       +  +AL  ++         I +  +
Sbjct: 375 RYIHHYNFPSYSTGETRPLRGPGRREIGHG----ALAEKALEPLIPSEDQFPYTIRLVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A+I G+ +AL D    ++  +    +  +    ++           + D+
Sbjct: 431 VLSSNGSTSQASICGSTLALLDAGVPIKRPAAGIAMGLITSEDLS-------KEEIVTDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
              ED   D+D     T+ G I  +Q   +    S++     LN A+  
Sbjct: 484 QGIEDFFGDMDFKVGGTEKG-ITAIQFDTKIHGLSENCIRETLNRARTA 531



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 79/215 (36%), Gaps = 26/215 (12%)

Query: 30  VKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGG 85
           + +GDT +L  A       E V  +  + ++       G +P   G  +KRE   G+   
Sbjct: 34  ISYGDTVVLINANASDKPREGVDFFPLSIEYEERLYSVGKIP---GGFIKRE---GKPSE 87

Query: 86  RSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHME 145
           ++    R I R LR +         Q++     +  D      AI GA +AL        
Sbjct: 88  KAILHARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDNAPDILAINGASLALCM------ 141

Query: 146 DCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
                   S      V A+S G++ G  +++    E S   ++     TD   ++ V+  
Sbjct: 142 -------SSIPFTTPVGAVSVGLVDGKFVINPGLEERSKSSLNLTVCATDE-RVMMVEAG 193

Query: 206 AERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            +     +D  +  +    +    ++  QK+ ++ 
Sbjct: 194 GDEIP--EDTMYDAIMFGFEECKKIVAFQKETMNK 226


>gi|284006672|emb|CBA71934.1| polyribonucleotide nucleotidyltransferase [Arsenophonus nasoniae]
          Length = 708

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 101/248 (40%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +    + +   G  T 
Sbjct: 315 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDELMGEYTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   +     + +  +
Sbjct: 375 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPNQSEFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     Y +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKENDDYVV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITREIMQVALNQAKGARLHILTI 536

Query: 234 QKDVISNE 241
            ++ I+  
Sbjct: 537 MEEAINRP 544



 Score = 75.1 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 79/247 (31%), Gaps = 38/247 (15%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           +++   +  + A  + +V   DT +  T   ++KV           +T  Y     + G 
Sbjct: 16  VTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKV---KEGQDFFPLTVNYQERSYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR G     I R+I R LR +         QII     I         
Sbjct: 73  IPGSFFRRE---GRPGEGETLIARLIDRPLRPLFPEGFFNEIQIIATVVSINPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E  +  +D
Sbjct: 130 AMIGASAALSISGI-------------PFNGPIGAARVGYIDDQYVLNPTVDELKSSRLD 176

Query: 189 ANFVMT---------DSGHIVEVQGSAERATFSQDHFFAMLN----LAKDRIADLIKLQK 235
                T         ++  + E Q       F  +    ++     LA +   +    Q 
Sbjct: 177 LVVAGTSSAVLMVESEADLLTEEQMLG-AVVFGHEQQQIVIENINALAAETNKEKWDWQP 235

Query: 236 DVISNEV 242
           + I+ E+
Sbjct: 236 EAINEEL 242


>gi|21243412|ref|NP_642994.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|81801072|sp|Q8PJ59|PNP_XANAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|21108963|gb|AAM37530.1| polynucleotide phosphorylase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 704

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 91/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR  + +R IS T  V     GS L   G+T  +   TL       + +   G   
Sbjct: 315 VRIDGRALDTVRPISATAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAVSGEYK 374

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  A   R+ G      R+  R + +V+         I +  
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHG----RLAKRGVLAVMPTLEEFPYTIRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PIKAPVAGIAMGLVKEGNDFV 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  AK     ++ 
Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILG 536

Query: 233 LQKDVISNE 241
                ++  
Sbjct: 537 EMAHALTTP 545



 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 68/192 (35%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ +VK  DT LL TA    +  E    +     +       G +P 
Sbjct: 15  VTLETGEIARQAGGAVIVKVDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +   I R+I R +R +         QII     +  D     A
Sbjct: 74  --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                    KG + A   G   G  I++    E     ++
Sbjct: 129 ALIGASAALSLAGT-------------PFKGPIGAAKVGYKNGEYILNPTVTELKDSQLE 175

Query: 189 ANFVMTDSGHIV 200
                T +  ++
Sbjct: 176 LVVAGTANAVLM 187


>gi|296223817|ref|XP_002757788.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial [Callithrix jacchus]
          Length = 784

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 19/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R +S    + K   GS L + G T +L T T +        ++V   I  
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQVITAING 417

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   ++ R+ G       +  +AL  V+         I 
Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHG----ALAEKALYPVIPKDF--PFTIR 471

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  V K        G +  Y 
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEK---GEIDDYR 528

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T+ G I  +Q   +            +  A     ++++
Sbjct: 529 LLTDILGIEDYNGDMDFKMAGTNKG-ITALQADIKLPGIPIKIVMEAVQQASVAKKEILQ 587

Query: 233 LQKDVISNE 241
           +    IS  
Sbjct: 588 IMNKTISKP 596



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 27/203 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R++ ++     ++A+GS +V+ GDT ++ T    T             +    A  G +P
Sbjct: 54  RKLEISSGKLARFADGSAVVQSGDTAVMVTVVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
               N ++RE  +     +     R+I R++R +         Q++  C+++  DG    
Sbjct: 114 ---TNYLRREIGT---SDKEILTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEP 165

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI GA VAL                     G V A+  GM+ G  +V+    E S+ 
Sbjct: 166 DVLAINGASVALS-------------LSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSS 212

Query: 186 DVDANFVMTDSGHIVEVQGSAER 208
            ++          IV ++ SAE 
Sbjct: 213 TLNLVVAGAPKSQIVMLEASAEN 235


>gi|317129156|ref|YP_004095438.1| polyribonucleotide nucleotidyltransferase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474104|gb|ADU30707.1| polyribonucleotide nucleotidyltransferase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 697

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 313 IRPDGRKPDEIRALASEIDILPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGIEET 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G            G R      +  RAL  V+         I +  
Sbjct: 373 KRFMHHYNFPSFSVGE----TGPIRGPGRREIGHGALGERALEQVIPSEEDFPYTIRLVS 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G T  A+I  + +A+                   +K  VA I+ G++       
Sbjct: 429 EVLESNGSTSQASICASTLAMMAAGV-------------PIKAPVAGIAMGLVKHEEDVT 475

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G +  +Q   + +   +      L+ A++    +++
Sbjct: 476 VLTDIQGMEDALGDMDFKVAGTKKG-VTAIQMDIKISGIDRAVLEQALSQAREGRIKILE 534

Query: 233 LQKDVISNE 241
             +  IS  
Sbjct: 535 SMESAISTP 543



 Score = 91.7 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 94/233 (40%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ LV++GDT +L   TA+ E K +P +     +       G +P
Sbjct: 15  RTLTIEVGQLAKQANGAVLVRYGDTAVLSTATASKEPKDLPFFPLTVNYEERLYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        D     
Sbjct: 75  ---GGFIKRE---GRPSDHAVLTSRLIDRPIRPMFPDGFRNDVQVISIVMSNDQDAPAEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A ++ G + G  I++    +  T D+
Sbjct: 129 AAMIGSSLALS-------------VSDIPFSGPIAGVTIGRIDGEFIINPTPQQLETSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +   V  +   I  V+  AE     ++     L    D I  +I  Q+D++S 
Sbjct: 176 EL-VVAGNKDAINMVEAGAEEVP--EETILEALMYGHDEIKRIIAFQEDIVSK 225


>gi|262280783|ref|ZP_06058566.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262257683|gb|EEY76418.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 697

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 94/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L T TL       +      TK  
Sbjct: 317 RIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLSGTKTD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +      R+ G      R+  R +++V+  +      I I  D
Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA ++L D                 LK  VA I+ G++  G     
Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +++G I  +Q   +    +++     LN A      ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGSENG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNE 538

Query: 234 QKDVIS 239
              VIS
Sbjct: 539 MNKVIS 544



 Score = 74.7 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 77/234 (32%), Gaps = 39/234 (16%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           + L    V++ A  + LV  G   +L         P          +T  Y     + G 
Sbjct: 18  VVLETGRVARQAN-TVLVTMGGVTVLVAVV---AQPKAKAGQDFFPLTVNYQEKQYAAGR 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126
                 KRE   GRQ      I R+I R +R +          I +   VI +D      
Sbjct: 74  IPGGYGKRE---GRQSEAETLISRLIDRPIRPLFPEGFYNE--IQVTATVISSDKTMDAD 128

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA  A+                +   +G +A    G++ G  I++  + +    D
Sbjct: 129 IAAMIGASAAMSIA-------------AVPFRGPIAGARVGLINGEYILNPTHEQLKESD 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233
           +D     T+S  ++     +E    S+D            + +A   I +    
Sbjct: 176 LDLVVAGTESAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAVQAIKEFAAA 226


>gi|237750416|ref|ZP_04580896.1| polyribonucleotide nucleotidyltransferase [Helicobacter bilis ATCC
           43879]
 gi|229373946|gb|EEO24337.1| polyribonucleotide nucleotidyltransferase [Helicobacter bilis ATCC
           43879]
          Length = 734

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 91/245 (37%), Gaps = 30/245 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R  GR   ++REIS+   +     GS     G T  L T TL    + +    I      
Sbjct: 353 RADGRALREIREISIESNLLPKTHGSACFTRGQTQALVTCTLGSQNDAQTQEGILTQGKS 412

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            I   Y   P S G      A S R+ G       +  +A+ S V   A     I +  +
Sbjct: 413 KIIFHYNFPPFSVGEAYPIGASSRRELGHG----NLALKAIESNV---ANTPHTIRLVSE 465

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           ++Q++G +  A++ GA +AL      M                VA I+ G++        
Sbjct: 466 ILQSNGSSSMASVCGASLALLGADIKM-------------HNMVAGIAMGLIYESEERFA 512

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D      + G    +Q   +    S+      L  A++ I  ++ 
Sbjct: 513 ILSDIMGLEDFDGDMDFKIAGNEKG-FSALQLDIKIHGLSESILNQSLEQAREGILHILS 571

Query: 233 LQKDV 237
           L ++V
Sbjct: 572 LMRNV 576



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 84/230 (36%), Gaps = 39/230 (16%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHGWITAEYGMLPRSTGNRVK 75
            +  A+ S ++K G + LL +  ++ + P        + ++       G +P      +K
Sbjct: 48  YATLADRSVMLKVGGSVLLCSVCVDYENPSSEDFLPLSVQYVEKMYAIGKIP---QGFLK 104

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA--AITGA 133
           +E   G+       I R+I R+LR +         QI I   V+  D        A+  A
Sbjct: 105 KE---GKPSDNEILISRLIDRSLRPLFPKDYPYPVQITI--LVMSYDNKIDICQKAMNLA 159

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV--DLDYGEDSTIDVDANF 191
            + L+     +             KG +  I          +  DL+   +S +D+    
Sbjct: 160 SICLYLSSIPLTQ-----------KGILNGIRVMRRDDEFSLCDDLNDLLESKLDL-FVS 207

Query: 192 VMTDSGHIVEVQG----SAERAT-------FSQDHFFAMLNLAKDRIADL 230
            + ++  ++E+Q     +  + +        S++     +NLAK  I  +
Sbjct: 208 GINNNVSMIEMQSLKTTTQNKDSIIENANEISKNDLLEAINLAKKHIETM 257


>gi|15887437|ref|NP_353118.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium
           tumefaciens str. C58]
 gi|187470963|sp|A9CKQ7|PNP_AGRT5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|15154950|gb|AAK85903.1| polyribonucleotide nucleotidyltransferase [Agrobacterium
           tumefaciens str. C58]
          Length = 713

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR  + +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 316 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++  +      + +  +
Sbjct: 376 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPTAEQFPYTLRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   + A  +++     L  A+     ++    + 
Sbjct: 483 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEMANA 541

Query: 238 ISN 240
           I+ 
Sbjct: 542 ITE 544



 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 76/229 (33%), Gaps = 31/229 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + L    V++ A+G+ +  +G+T +L T     + +     +     +   T   G +
Sbjct: 14  RPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR   +   + R+I R +R +         Q+++   VIQ D    
Sbjct: 74  P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVT--VIQHDLEND 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++  A  AL                     G V     G + G  +++    E   
Sbjct: 126 PDVLSMVAASAALTLSGI-------------PFMGPVGGARVGYINGEYVLNPHLDEMDE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
             +D     T    ++     +E    +++     +         +I  
Sbjct: 173 SVLDLVVAGTQDAVLMV---ESEAKELNEEIMLGAVMFGHKGFQPVIDA 218


>gi|197336129|ref|YP_002155245.1| polyribonucleotide nucleotidyltransferase [Vibrio fischeri MJ11]
 gi|226704830|sp|B5FA83|PNP_VIBFM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|197317619|gb|ACH67066.1| polyribonucleotide nucleotidyltransferase [Vibrio fischeri MJ11]
          Length = 709

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 98/247 (39%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +    I ++  G    
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSLMGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R +++V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIQAVMPSIEEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   +    +++     LN A+     ++K+
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNEG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILKV 537

Query: 234 QKDVISN 240
             + IS 
Sbjct: 538 MDEAISG 544



 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE-EKVP---MWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +    DT +  +   + E VP    +     +   T   G +P 
Sbjct: 17  VTLETGVIARQATAAVMASMDDTSVFVSVVAKKEAVPGQDFFPLTVNYQERTYAAGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +   +     Q+I     I  +      
Sbjct: 76  --GGFFKRE---GRPSEAETLTARLIDRPIRPLFPDAFKNEVQVIATVVSINPEVNPDMI 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + A   G + G  +++    E     +D
Sbjct: 131 TMIGTSAALAIAGI-------------PFNGPIGAARVGHINGELVLNPSNTELENSKLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T+ G ++ V+  +E    +++   + +    D+   +IK   +
Sbjct: 178 LVVSGTE-GAVLMVE--SEADNLTEEEMLSAVVFGHDQQQVVIKAINE 222


>gi|282855612|ref|ZP_06264926.1| polyribonucleotide nucleotidyltransferase [Pyramidobacter piscolens
           W5455]
 gi|282586542|gb|EFB91796.1| polyribonucleotide nucleotidyltransferase [Pyramidobacter piscolens
           W5455]
          Length = 751

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 89/244 (36%), Gaps = 28/244 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
           +R  GR  +++R IS    V     GS L   G+T  L   TL     ++++   ++  +
Sbjct: 311 IRADGRATDEIRPISCEVNVLPKVHGSALFTRGETQALVVTTLGMLGEDDQIIDGLKLDE 370

Query: 56  -HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
            +      Y   P S G          R+ G       +  RAL  +V         + +
Sbjct: 371 PNKRFLLHYNFPPYSVGEIKPMRGPGRREIGHG----ALAERALAPLVPGEEEFPYVVRV 426

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             D+++++G +  A+I G  +++      M             K HVA I+ G++     
Sbjct: 427 VSDILESNGSSSQASICGGSLSMMAAGVPM-------------KKHVAGIAMGLIKEGDD 473

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G +  +Q   +    +++     L  A      +
Sbjct: 474 MVILTDIQGLEDHYGDMDFKVAGTRDG-VTALQMDNKAGGITREILSRALMQAHQARMQI 532

Query: 231 IKLQ 234
           +   
Sbjct: 533 LDAM 536



 Score = 75.5 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 79/223 (35%), Gaps = 28/223 (12%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           V+K A  + +   G+T +LTTA         +  +             G +P   G  +K
Sbjct: 21  VAKQANAAVVASHGETTILTTACMSDKPRVGLDFFPLLVDFEERYYAAGKIP---GGYIK 77

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE   GR    +    R++ R++RS+ D S      ++     +         AI  A +
Sbjct: 78  RE---GRPSQTAILSARVVDRSIRSLFDDSMRNDVHVVATVLAVDQKNPANILAINAASM 134

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF-VMT 194
           AL                     G V A+  G + G  +V+    ED   +   +  V  
Sbjct: 135 AL-------------TISDIPWSGPVGAVRMGCIDGELVVNPT--EDRMAESTLDLTVAG 179

Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            +G I  V+  A      ++     L  A+D I  ++  Q  V
Sbjct: 180 HAGGITMVEAGAREVP--EELLVNALQTAQDEIKKIVAFQLQV 220


>gi|260550547|ref|ZP_05824757.1| polyribonucleotide nucleotidyltransferase [Acinetobacter sp.
           RUH2624]
 gi|260406462|gb|EEW99944.1| polyribonucleotide nucleotidyltransferase [Acinetobacter sp.
           RUH2624]
          Length = 697

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L T TL       +      TK  
Sbjct: 317 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLSGTKTD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +      R+ G      R+  R +++V+  +      I I  D
Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA ++L D                 LK  VA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGDRFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G I  +Q   +    +++     LN A      ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNE 538

Query: 234 QKDVIS 239
              VIS
Sbjct: 539 MNKVIS 544



 Score = 75.1 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 81/237 (34%), Gaps = 43/237 (18%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           ++ L    V++ A  + L+  G   +L     + K            +T  Y     + G
Sbjct: 17  QVVLETGRVARQAN-TVLITMGGVTVLVAVVAQSKA---KAGQDFFPLTVNYQEKQYAAG 72

Query: 72  NRVKREAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDC----DVIQADG 123
              +     G++ GR+ E    I R+I R +R +         Q+          ++AD 
Sbjct: 73  ---RIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSSDKTMEAD- 128

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
               AA+ G   AL                    +G + A   G++ G  +++ ++ + +
Sbjct: 129 ---IAAMLGTSAALAIAGT-------------PFRGPIGAARVGLINGEYVLNPNFEQMA 172

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233
             D+D     T++  ++     +E    S+D            + +A   I +    
Sbjct: 173 QSDLDLVVAGTEAAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAA 226


>gi|116330633|ref|YP_800351.1| polynucleotide phosphorylase/polyadenylase [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|122281612|sp|Q04U27|PNP_LEPBJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116124322|gb|ABJ75593.1| Polyribonucleotide nucleotidyltransferase [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 696

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 85/226 (37%), Gaps = 30/226 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----N 72
           T   +K A G+ + K G+  LL T    +             +T EY     S G     
Sbjct: 18  TGNWAKQAHGAVVYKSGNLVLLATVCAADDA---KEGQDFFPLTCEYTEKLYSVGRFPGG 74

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA--AI 130
             KREA   +       I R+I R +R +         Q+ +   V+ ADG    A  A+
Sbjct: 75  YFKREA---KPPEHEILISRIIDRPIRPLFPEGYFCEVQLQV--QVLSADGDVSVAGHAL 129

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
             A VAL                     G +A    G + G  I++    E    D+D  
Sbjct: 130 NAASVAL-------------TISDIPFNGPIAGARIGRINGELILNPTTKEIVNSDLDLV 176

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              T + HIV ++G A+    S +   + L  A+  IA+ + LQ++
Sbjct: 177 VAGTKT-HIVMIEGEAKE--LSNEEMLSALRFAQKHIAEFVTLQEE 219



 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 90/249 (36%), Gaps = 27/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           +R  GR+ +++R IS+         GS +   G T  L   TL           +   K 
Sbjct: 313 VRFDGRRLDEIRPISVEINPLPGPHGSSVFTRGQTQSLGVVTLGTGSDNQRYETLEGQKE 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G  V+R +  GR   R      +  RAL+ V+  S      I +  
Sbjct: 373 KSFMLHYNFPAFSVGE-VRRSSGPGR---REIGHGNLAERALKLVLPKSEEFPYVIRVVS 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++++++G +  A++    +AL                   +KG V+ I+ G+        
Sbjct: 429 EILESNGSSSMASVCSGSLALMAAGV-------------PIKGSVSGIAMGLFSDSSGKY 475

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S D   ++   A+     ++
Sbjct: 476 AVLSDIAGLEDHFGDMDCKIAGTRKG-ITAFQMDLKVTGVSFDVLESVFEQAQRGRFHIL 534

Query: 232 KLQKDVISN 240
            + +  IS 
Sbjct: 535 DIMEKHISK 543


>gi|257096716|sp|B0RRB8|PNP_XANCB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 704

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 91/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR  + +R IS+   V     GS L   G+T  +   TL       + +   G   
Sbjct: 315 VRIDGRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTARDGQVIDAVAGEYK 374

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  A   R+ G      R+  R + +V+         I +  
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHG----RLAKRGVLAVMPSLEEFPYTIRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEDDRFV 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  AK     ++ 
Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILG 536

Query: 233 LQKDVISNE 241
                ++  
Sbjct: 537 EMSKALTTP 545



 Score = 75.5 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 79/228 (34%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A G+ +VK  DT LL TA    T  E    +     +       G +P 
Sbjct: 15  VTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTVDYQEKFYAGGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +   I R+I R +R +         QII     +  D     A
Sbjct: 74  --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G   G  I++    E     ++
Sbjct: 129 ALIGASAALSLAGT-------------PFNGPIGAAKVGYKNGEYILNPTITELKDSQLE 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T +  ++     +E A  S++     +      +  +I +  +
Sbjct: 176 LVVAGTANAVLMV---ESEAALLSEEVMLGAVTFGHREMQKVINIINE 220


>gi|83941735|ref|ZP_00954197.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp. EE-36]
 gi|83847555|gb|EAP85430.1| polyribonucleotide nucleotidyltransferase [Sulfitobacter sp. EE-36]
          Length = 711

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 91/243 (37%), Gaps = 17/243 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+ +++R+I     +     GS L   G+T  L   TL           +      
Sbjct: 318 RIDGRKTDEIRDIVAETGILPRTHGSSLFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+  S      I +  +
Sbjct: 378 NFMLHYNFPPYSVGEVGR----VGGPGRREIGHGKLAWRALQAVLPASTDFPYTIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +++ D    ++       +  +L+      S  +     + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILED---DGSYAI-----LSDI 485

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   + A  + +     L  AK     ++      
Sbjct: 486 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITPEIMEKALAQAKAGRVHILGEMNKA 544

Query: 238 ISN 240
           IS 
Sbjct: 545 ISG 547



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 82/231 (35%), Gaps = 33/231 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70
           ++L    V++ A+GS +   G+T ++   T   +            +T  Y     +   
Sbjct: 16  LTLETGKVARQADGSVIATLGETSVMANVTFARQQKP---GQDFFPLTVHYQEKYYAAGK 72

Query: 71  --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++ C V+  D      
Sbjct: 73  VPGGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG--EDST 184
             A+  A  AL                    +G + A   G   G  +++      +D  
Sbjct: 128 MVAMIAASAALTISGA-------------PFRGPIGACRVGFEDGDYVLNPTVDDMQDLR 174

Query: 185 IDVD--ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           ++ D   + V+  +   V +  S E    S++     +  A ++I  +I L
Sbjct: 175 LNPDQRLDLVVAGTKEAVMMVES-EAYELSEEEMLGAVKFAHEQIQPVIDL 224


>gi|312901916|ref|ZP_07761179.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0470]
 gi|311290983|gb|EFQ69539.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0470]
          Length = 704

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 89/240 (37%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  L+  T     E ++   +     
Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL  ++         I +  
Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQIIPSEEDFPYTIRLVA 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      L+ AK    ++++
Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILE 539



 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 93/232 (40%), Gaps = 26/232 (11%)

Query: 12  REISLT-RRVSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R + +   +++K A G+ LV++GDT +L    A+ E K V  +     +       G +P
Sbjct: 14  RPLEVKSAQLAKKANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   R+    R+I R +R +         QI      ++ D     
Sbjct: 74  ---GGFIKRE---GRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVEQDCTPEM 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  +++    +    D+
Sbjct: 128 AAMFGSSLALA-------------ISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDI 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    D I +L+  Q+++++
Sbjct: 175 ELTVAGTKEA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223


>gi|148380367|ref|YP_001254908.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A
           str. ATCC 3502]
 gi|153933900|ref|YP_001384587.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum A
           str. ATCC 19397]
 gi|153934955|ref|YP_001388103.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum A
           str. Hall]
 gi|187610255|sp|A7FVY7|PNP_CLOB1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610257|sp|A5I4I7|PNP_CLOBH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148289851|emb|CAL83959.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A
           str. ATCC 3502]
 gi|152929944|gb|ABS35444.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A
           str. ATCC 19397]
 gi|152930869|gb|ABS36368.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum A
           str. Hall]
          Length = 702

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 86/244 (35%), Gaps = 16/244 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           R  GR  +++R IS    +     G+ L   G T ++T AT     + ++   I   +  
Sbjct: 312 RPDGRAFDEVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIAEEESK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  RAL  ++   +     I +  +
Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSQSEFPYTIRLVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A++ G+ +AL D    ++  +    +  +    +            I D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLE-------KEKVITDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   +    S       L  AK     ++   K+ 
Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIKEC 539

Query: 238 ISNE 241
           I   
Sbjct: 540 IPEP 543



 Score = 81.7 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 88/236 (37%), Gaps = 31/236 (13%)

Query: 12  REISL---TRRVSKYAEGSCLVKFGDTHLL--TTAT--LEEKVPMWIRNTKHGWITAEYG 64
           R++ +      +   A     + +GDT ++    A+    E +  +  + ++       G
Sbjct: 12  RKMKVDFGKTGMLSNAA--IFMSYGDTVVMINANASKEPREGIDFFPLSVEYEERLYSVG 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G  +KRE   G+   +S    R I R LR +         QI+     ++ D  
Sbjct: 70  KIP---GGFIKRE---GKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQDNL 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               AI G+ +AL                S      VAA+S G++ G  I++    +   
Sbjct: 124 PEILAINGSSLALC-------------LSSIPFTTPVAAVSVGLVDGEFIINPTVAQREN 170

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             +D     T    ++ V+   +     ++  ++ +    +   +++  Q++ ++ 
Sbjct: 171 TILDLTVCATKE-RVMMVEAGGQE--IDEETMYSAIMFGFEECKNIVAFQEEAVAK 223


>gi|310766258|gb|ADP11208.1| polynucleotide phosphorylase/polyadenylase [Erwinia sp. Ejp617]
          Length = 710

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 94/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 375 NFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKGDAFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKDDNNFVV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILSV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISGP 544



 Score = 61.6 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 57/187 (30%), Gaps = 24/187 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR         R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G L    +++    E     +D
Sbjct: 130 AMIGASAALALSGL-------------PFNGPIGAARVGYLNDQYVLNPTSDELKESKLD 176

Query: 189 ANFVMTD 195
                T 
Sbjct: 177 LVVAGTK 183


>gi|255550900|ref|XP_002516498.1| Exosome complex exonuclease RRP46, putative [Ricinus communis]
 gi|223544318|gb|EEF45839.1| Exosome complex exonuclease RRP46, putative [Ricinus communis]
          Length = 211

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 77/215 (35%), Gaps = 29/215 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R ++ +R V   A GS     GDT +L      +       N +   I  
Sbjct: 5   RDDGRTPNQLRPLACSRNVLNRAHGSASWCQGDTKVLAAVYGPKPGTKKNENPEKACIEV 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            +                +G+ G   +E + ++ R L+++  L+   +    +   V+  
Sbjct: 65  IWK-------------PKTGQIGKVEKEYEMILKRTLQTICVLTINPNTTTSVIVQVVHD 111

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DG   T AI  A  AL D    M+  +            VA   C    GY I+D    E
Sbjct: 112 DGALLTCAINAACAALVDAGIPMKHLA------------VAICCCLSESGYVILDPTKLE 159

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSA---ERATFSQ 213
           +  +      V  +S H V +Q  +   E      
Sbjct: 160 EQKMKGFTYLVFPNSVHSV-LQKESVLVEGEPMDH 193


>gi|126726062|ref|ZP_01741904.1| polynucleotide phosphorylase/polyadenylase [Rhodobacterales
           bacterium HTCC2150]
 gi|126705266|gb|EBA04357.1| polynucleotide phosphorylase/polyadenylase [Rhodobacterales
           bacterium HTCC2150]
          Length = 710

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 92/243 (37%), Gaps = 17/243 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR  + +R I     +     GS L   G+T  L   TL       + +  HG    
Sbjct: 318 RIDGRDTSTIRPIVSETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDALHGTYKS 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      ++  RAL++V+  +      I +  +
Sbjct: 378 NFMLHYNFPPYSVGEVGRFGFTGRREIGHG----KLAWRALQAVLPAATDFPYTIRLVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +A+ D    ++       +  +L+      S  +     + D+
Sbjct: 434 ITESNGSSSMASVCGGSLAMMDAGVPLKSAVAGVAMGLILED---DGSYAI-----LSDI 485

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   + A  + +     L  AKD    ++      
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKIAGITPEIMEKALAQAKDGRMHILGEMNKA 544

Query: 238 ISN 240
           +S 
Sbjct: 545 LSG 547



 Score = 71.7 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 78/231 (33%), Gaps = 33/231 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+GS +   G+T ++   T     +     +     +G      G +P 
Sbjct: 16  LTLETGKVARQADGSVIATLGETSVMANVTFAKAQKPGQDFFPLTVHYGEKYYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++ C V+  D      
Sbjct: 75  --GGFFKREA---RPTEKETLTSRLIDRPIRPLFVDGF--KNEVLLICTVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE----D 182
             A+  A  AL                     G +AA   G   G  +++    +     
Sbjct: 128 IVAMIAASAALTISGA-------------PFMGPIAAARVGFTEGEYVLNPSIDDMHKLR 174

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
              D   + V+  +   V +  S E    S+      +  A D    +I L
Sbjct: 175 DNPDQRLDLVVAGTKDAVMMVES-EAYELSEAEMLGAVRFAHDSFQPVIDL 224


>gi|289676030|ref|ZP_06496920.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. syringae FF5]
          Length = 472

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 18/229 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 87  RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 146

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      R+  R++++++  + +    I +  +
Sbjct: 147 PFMLHYNFPPFSVGECGRMGGAGRREIGHG----RLARRSVQAMLPGADVFPYTIRVVSE 202

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    M+       +  V +G   AI         + D+
Sbjct: 203 ITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAI---------LTDI 253

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
              ED   D+D     T  G +  +Q   +    +++     L  A + 
Sbjct: 254 LGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQALEA 301


>gi|219849396|ref|YP_002463829.1| polynucleotide phosphorylase/polyadenylase [Chloroflexus aggregans
           DSM 9485]
 gi|257096672|sp|B8G3Z1|PNP_CHLAD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219543655|gb|ACL25393.1| Polyribonucleotide nucleotidyltransferase [Chloroflexus aggregans
           DSM 9485]
          Length = 755

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 100/249 (40%), Gaps = 29/249 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
           +R+ GR  +++R IS+   V     GS L   G T +LT ATL     E+KV      T 
Sbjct: 320 IRVDGRALDEIRPISIEVGVVPRVHGSALFTRGQTQVLTIATLGSPGDEQKVDDLGIETT 379

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I   Y   P STG   +      R  G       +  R+L +V+         I + 
Sbjct: 380 KRYIH-HYNFPPFSTGEIRRLGTPRRRDIGHG----ALAERSLYAVLPSEEEFPYTIRLV 434

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            +V+ ++G +  A++ G+ ++L D                 +K  VA ++ G++ G    
Sbjct: 435 SEVLSSNGSSSMASVCGSSLSLMDAGV-------------PIKAPVAGVAMGLITGEDGR 481

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED+  D+D     T +G +  +Q   +    + +        A+     +
Sbjct: 482 WRVLTDIQGIEDALGDMDFKVAGTANG-VTGLQMDIKTTGITYEIMRQAFAQARAGRLFI 540

Query: 231 IKLQKDVIS 239
           ++    VIS
Sbjct: 541 LEKMNAVIS 549



 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 80/234 (34%), Gaps = 31/234 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R ++L     ++ A+G+ + ++GDT LL T        E    +     +       G +
Sbjct: 16  RTLTLEAGRFAEQADGAVVARYGDTMLLATVVCAKEAREGTDFFPLTVDYEEKMYAVGKI 75

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ--ADGG 124
           P    N  KRE   GR    +  I R+  R LR +         Q+II    I    D G
Sbjct: 76  P---ANFFKRE---GRPTTTAILISRLTDRPLRPLFPKGFYNEVQVIITTFSIDMENDPG 129

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
                           L  +   +          G V A+  G L G  +V+   GE   
Sbjct: 130 P---------------LAIIAASAALAISDIPFAGPVGAVQMGHLDGKLVVNPKMGEIEK 174

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             +D     T    ++   G+ E    S+D     +         + +LQ+ ++
Sbjct: 175 SRLDLVVAGTKDAVLMVEAGAYE---LSEDEMLQAVIEGHAVCKQICELQEQLV 225


>gi|91069865|gb|ABE10796.1| polyribonucleotide nucleotidyltransferase [uncultured
           Prochlorococcus marinus clone ASNC1363]
          Length = 721

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 98/238 (41%), Gaps = 36/238 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66
           REI LT    +  A GS +++ GDT LL TAT   K       +    +  +Y       
Sbjct: 13  REIRLTTGLYAPQASGSVMIECGDTSLLVTATKTLK----KETSDFLPLICDYEEKLYAA 68

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----AD 122
            R  G  ++RE   GR   R+  I R+I R +R +  +      QI+  C  +     AD
Sbjct: 69  GRIPGGFMRRE---GRPPERATLIARLIDRPMRPLFPVWMRDEIQIVASCLSLDERVPAD 125

Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
                 A+TGA +A                      G +AA+  G++    I++  Y E 
Sbjct: 126 ----VLAVTGASIA-------------TLLGEIPFYGPMAAVRVGLIGDDFILNPSYREI 168

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
              D+D     +  G IV ++  A +   S+      ++   + + +LIK Q+D++ +
Sbjct: 169 EKGDLDIVVAGSPDG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVTELIKSQEDLLKD 223



 Score = 91.3 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 93/252 (36%), Gaps = 33/252 (13%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R+ GR  +++R+I+ +  +  K   GS L + G T +L+T TL    P   +       +
Sbjct: 323 RVDGRDLDEVRKITASASILPKRVHGSALFQRGLTQVLSTTTL--GTPSDAQEMDDLNPS 380

Query: 61  AE------YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            E      Y   P S G  R  R       G R      +  RA+  V+         + 
Sbjct: 381 TEKTYLHHYNFPPYSVGETRPMRT-----PGRREIGHGALAERAIIPVLPGKETFPYVLR 435

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-- 171
           +  +V+ ++G T   ++ G+ ++L D                 LK  V+  + G++    
Sbjct: 436 VVSEVLSSNGSTSMGSVCGSTLSLLDAGV-------------PLKAPVSGTAMGLIKEGK 482

Query: 172 --YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED   D+D     TD G I  +Q   +            +  A+     
Sbjct: 483 EVRILTDIQGIEDFLGDMDFKVAGTDKG-ITALQMDMKITGLPVSIISDAIKKARPARLH 541

Query: 230 LIKLQKDVISNE 241
           +++  ++ I   
Sbjct: 542 ILEKMQEAIDKP 553


>gi|59711097|ref|YP_203873.1| polynucleotide phosphorylase/polyadenylase [Vibrio fischeri ES114]
 gi|75354543|sp|Q5E7L1|PNP_VIBF1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|59479198|gb|AAW84985.1| polynucleotide phosphorylase (PNPase) [Vibrio fischeri ES114]
          Length = 709

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 98/247 (39%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +    I ++  G    
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSLMGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R +++V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIQAVMPSIEEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   +    +++     LN A+     ++K+
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNEG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILKV 537

Query: 234 QKDVISN 240
             + IS 
Sbjct: 538 MDEAISG 544



 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 78/234 (33%), Gaps = 35/234 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE-EKVP---MWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +    DT +  +   + E VP    +     +   T   G +P 
Sbjct: 17  VTLETGVIARQATAAVMASMDDTSVFVSVVAKKEAVPGQDFFPLTVNYQERTYAAGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +   +     Q+I     I  +      
Sbjct: 76  --GGFFKRE---GRPSEAETLTARLIDRPIRPLFPDAFKNEVQVIATVVSINPEVNPDMI 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + A   G + G  +++    E     +D
Sbjct: 131 TMIGTSAALAIAGI-------------PFNGPIGAARVGHINGELVLNPSNTELENSKLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                T+ G ++ V+  +E    +++   + +    +        Q+ V+ N +
Sbjct: 178 LVVSGTE-GAVLMVE--SEADNLTEEEMLSAVVFGHE--------QQQVVINAI 220


>gi|254450859|ref|ZP_05064296.1| polyribonucleotide nucleotidyltransferase [Octadecabacter
           antarcticus 238]
 gi|198265265|gb|EDY89535.1| polyribonucleotide nucleotidyltransferase [Octadecabacter
           antarcticus 238]
          Length = 710

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 96/248 (38%), Gaps = 27/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +++REI     +     GS L   G+T  L   TL       + ++  G   +
Sbjct: 318 RIDGRKTDEIREIVSETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDSLQGMYKS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+  +      I +  +
Sbjct: 378 NFLLHYNFPPYSVGEVGRF----GPPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           + +++G +  A++ G  +++ D                 LK  VA ++ G++        
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLIMEDSGEYA 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T++G I  +Q   + A  +       L  AK     ++ 
Sbjct: 481 ILSDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKIAGITPAIMKEALAQAKVGRIHILG 539

Query: 233 LQKDVISN 240
                +S+
Sbjct: 540 EMNKAMSS 547



 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 82/233 (35%), Gaps = 37/233 (15%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+G+ +  +G+T ++   T     +     +     +       G +P 
Sbjct: 16  LTLETGKVARQADGTVIATYGETTVMANVTFAKKQKPGQDFFPLTVHYNEKYYAAGKVP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++ C V+  D      
Sbjct: 75  --GGFFKREA---RPTEKETLTSRLIDRPIRPLFVDGF--KNEVLVICTVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG------ 180
             A+  A  AL                     G +AA   G   G  I++ +        
Sbjct: 128 MVAMIAASAALTISGA-------------PFMGPIAACRVGFEDGDYILNPEMDDMHKLR 174

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           E+    +D     T    ++ V+  +E    S++     +  A  +I  +I +
Sbjct: 175 ENPDQRLDLVVAGTKDA-VMMVE--SEAYELSEEEMLGAVEFAHAQIQPVIDM 224


>gi|319405094|emb|CBI78698.1| polyribonucleotide nucleotidyltransferase [Bartonella sp. AR 15-3]
          Length = 733

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 86/242 (35%), Gaps = 18/242 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR  + +R I     +     GS L   G+T  L  ATL         ++  G    
Sbjct: 317 RIDGRNLSDVRPIQSEVGLFPRTHGSALFTRGETQALVIATLGTGEDEQYIDSLTGMYKE 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++         I    +
Sbjct: 377 TFLLHYNFPPFSVGEIGR----IGSPGRREIGHGKLAWRAIHPMLPTKESFPYTIRTVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  + +G   A+         + D+
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGEQFAV---------LSDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   +    +++     L  AKD    ++      
Sbjct: 484 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMAKA 542

Query: 238 IS 239
           ++
Sbjct: 543 LA 544



 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 80/233 (34%), Gaps = 35/233 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ +  +G+T +L T     T +     +     +       G +
Sbjct: 14  RPLILETGKIARQADGAIIATYGETVVLATVVSAKTPKPDQNFFPLTVNYQEKNYAVGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE    R       I R+I R +R +         Q+I+   VIQ D    
Sbjct: 74  P---GGYFKRE---NRPSESETLISRLIDRPIRPLFVDGYKNDTQVIVS--VIQHDLENN 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               AI  +  AL                     G +AA   G   G  I++ +  E   
Sbjct: 126 PDILAIIASSAALTLSGI-------------PFMGPIAAARIGYCNGQYILNPNIDEMPE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKL 233
             +D     T++  ++     +E     +D     +   +      I  +IKL
Sbjct: 173 SKLDLVVAGTENAVLMV---ESEAHELPEDVMLNAVMFGQKSFQPVINAIIKL 222


>gi|161079377|ref|NP_001097990.1| CG11337, isoform C [Drosophila melanogaster]
 gi|158030458|gb|ABW08815.1| CG11337, isoform C [Drosophila melanogaster]
          Length = 721

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 91/250 (36%), Gaps = 17/250 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56
           +R  GR  +Q+R IS    + K   GS L + G T +  T +L+ +      ++      
Sbjct: 304 LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDS 363

Query: 57  GWITA-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           G + A      Y   P +TG   +     G  G R      +  R+L   +         
Sbjct: 364 GGLKAKNFMLHYEFPPYATGEVGR----IGPVGRREMGHGALAERSLLPTLPND--YPFT 417

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
           + +  +V++++G +  A++ G  +AL D    +   +    +  V K      +  +   
Sbjct: 418 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTK-FENDDTKHLQDY 476

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G    +Q   +            L  A D  ++++
Sbjct: 477 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSNIL 535

Query: 232 KLQKDVISNE 241
            +  + I   
Sbjct: 536 DIMSEAIREP 545



 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 22/177 (12%)

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           +  S+G R+    +    G   +EI   R+I R+LR +         Q++ +   + A  
Sbjct: 52  MTFSSG-RIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVH 110

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
                AI  A +AL                     G + A+  G+  G  +++    E  
Sbjct: 111 SPDVLAINAASMALS-------------LSDIPWNGPIGAVRVGLCDGEVLINPTRRELQ 157

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN----LAKDRIADLIKLQKD 236
           T  +D     T    +V ++G  +     Q      +      A+  I ++ +LQK 
Sbjct: 158 TSQLDLVVSATKQNLVVMLEG--KGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKA 212


>gi|215277019|ref|NP_001135843.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Rattus
           norvegicus]
 gi|149044835|gb|EDL98021.1| polyribonucleotide nucleotidyltransferase 1 [Rattus norvegicus]
          Length = 784

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 90/249 (36%), Gaps = 19/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R IS    + K   GS L + G T +L T T +        +++   I  
Sbjct: 358 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 417

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   V+ R+ G       +  +AL  V+         I 
Sbjct: 418 VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHG----ALAEKALCPVIPKDF--PFTIR 471

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  V K +      G +  Y 
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKSNPEK---GEIEDYR 528

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T+ G I  +Q   +            +  A     ++++
Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGVPVKIIMEAIQQATVAKREILQ 587

Query: 233 LQKDVISNE 241
                IS  
Sbjct: 588 TMSKTISKP 596



 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 79/203 (38%), Gaps = 27/203 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R++ ++     ++A+G  +V+ GDT ++ TA   T             +    A  G +P
Sbjct: 54  RKLEISSGKLARFADGCAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
               N ++RE  S     +     R+I R++R +         Q++  C+++  DG    
Sbjct: 114 ---TNYLRREIGS---SDKEILTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEP 165

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI GA  AL                     G V A+  GM+ G  +V+    E S+ 
Sbjct: 166 DILAINGASAALS-------------LSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSS 212

Query: 186 DVDANFVMTDSGHIVEVQGSAER 208
            ++          IV ++ SAE 
Sbjct: 213 TLNLVVAGAPKSQIVMLEASAEN 235


>gi|29377522|ref|NP_816676.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           V583]
 gi|227554487|ref|ZP_03984534.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           HH22]
 gi|257088180|ref|ZP_05582541.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           D6]
 gi|75541451|sp|Q82ZJ2|PNP_ENTFA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|29344989|gb|AAO82746.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           V583]
 gi|227176397|gb|EEI57369.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           HH22]
 gi|256996210|gb|EEU83512.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           D6]
 gi|315027681|gb|EFT39613.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX2137]
 gi|315573355|gb|EFU85546.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0309B]
 gi|315581213|gb|EFU93404.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0309A]
          Length = 704

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 89/240 (37%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  L+  T     E ++   +     
Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL  ++         I +  
Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQIIPSEEDFPYTIRLVA 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      L+ AK    ++++
Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILE 539



 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 92/232 (39%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L    A+ E K V  +     +       G +P
Sbjct: 14  RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   R+    R+I R +R +         QI      ++ D     
Sbjct: 74  ---GGFIKRE---GRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVEQDCTPEM 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  +++    +    D+
Sbjct: 128 AAMFGSSLALA-------------ISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDI 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    D I +L+  Q+++++
Sbjct: 175 ELTVAGTKEA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223


>gi|307292085|ref|ZP_07571952.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0411]
 gi|306496867|gb|EFM66417.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0411]
          Length = 704

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 89/240 (37%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  L+  T     E ++   +     
Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL  ++         I +  
Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQIIPSEEDFPYTIRLVA 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      L+ AK    ++++
Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILE 539



 Score = 95.5 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 91/232 (39%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEE---KVPMWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L+ A   +    V  +     +       G +P
Sbjct: 14  RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKAAKDVDFFPLTVNYEEKMYAVGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   R+    R+I R +R +         QI      ++ D     
Sbjct: 74  ---GGFIKRE---GRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVEQDCTPEM 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  +++    +    D+
Sbjct: 128 AAMFGSSLALA-------------ISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDI 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    D I +L+  Q+++++
Sbjct: 175 ELTVAGTKEA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223


>gi|50083658|ref|YP_045168.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ADP1]
 gi|81393846|sp|Q6FF12|PNP_ACIAD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|49529634|emb|CAG67346.1| polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Acinetobacter sp. ADP1]
          Length = 697

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 93/246 (37%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L T TL       +      TK  
Sbjct: 317 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +      R+ G      R+  R +++V+  +      I I  D
Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA ++L D                 LK  VA I+ G++  G     
Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G I  +Q   +    +++     LN A      ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAYAGRMHILNE 538

Query: 234 QKDVIS 239
              VIS
Sbjct: 539 MNKVIS 544



 Score = 79.0 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 79/237 (33%), Gaps = 43/237 (18%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           ++ L    V++ A  + LV  G   +L         P          +T  Y     + G
Sbjct: 17  QVVLETGRVARQAN-TVLVTMGGVTVLVAVV---AQPKAKAGQDFFPLTVNYQEKQYAAG 72

Query: 72  NRVKREAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDC----DVIQADG 123
              +     G++ GR+ E    I R+I R +R +         QI          + AD 
Sbjct: 73  ---RIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQITATVVSSDKTMDAD- 128

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
               AA+ GA  AL                    +G +     G++ G  +++ ++ + +
Sbjct: 129 ---IAAMLGASAALSIAGT-------------PFRGPIGGARVGLINGEYVLNPNFEQLA 172

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233
             D+D     T+S  ++     +E    S+D            + +A   I +    
Sbjct: 173 QSDLDLVVAGTESAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAVQAIKEFAAA 226


>gi|257080529|ref|ZP_05574890.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           E1Sol]
 gi|256988559|gb|EEU75861.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           E1Sol]
          Length = 704

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 89/240 (37%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  L+  T     E ++   +     
Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL  ++         I +  
Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQIIPSEEDFPYTIRLVA 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      L+ AK    ++++
Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILE 539



 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 91/232 (39%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L    A+ E K V  +     +       G +P
Sbjct: 14  RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   R+    R+I R +R +         QI      +  D     
Sbjct: 74  ---GGFIKRE---GRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVDQDCTPEM 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  +++    +    D+
Sbjct: 128 AAMFGSSLALA-------------ISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDI 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    D I +L+  Q+++++
Sbjct: 175 ELTVAGTKEA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223


>gi|329295924|ref|ZP_08253260.1| polynucleotide phosphorylase/polyadenylase [Plautia stali symbiont]
          Length = 710

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 93/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L  ATL           +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVAATLGTARDAQNLDELMGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 375 SFLFHYNFPPFSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKQDAFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDEKFVV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILSV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISTP 544



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 67/212 (31%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKA---KAGQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVITTVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTADEIKQSRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +  ++     +E    ++D     +
Sbjct: 177 LVVAGTQNAVLIV---ESEADILTEDQMLGAV 205


>gi|255974311|ref|ZP_05424897.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T2]
 gi|255967183|gb|EET97805.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T2]
          Length = 704

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 89/240 (37%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  L+  T     E ++   +     
Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL  ++         I +  
Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQIIPSEEDFPYTIRLVA 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      L+ AK    ++++
Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILE 539



 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 92/232 (39%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L    A+ E K V  +     +       G +P
Sbjct: 14  RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   R+    R+I R +R +         QI      ++ D     
Sbjct: 74  ---GGFIKRE---GRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVEQDCTPEM 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  +++    +    D+
Sbjct: 128 AAMFGSSLALA-------------ISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDI 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    D I +L+  Q+++++
Sbjct: 175 ELTVAGTKEA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223


>gi|189465341|ref|ZP_03014126.1| hypothetical protein BACINT_01689 [Bacteroides intestinalis DSM
           17393]
 gi|189437615|gb|EDV06600.1| hypothetical protein BACINT_01689 [Bacteroides intestinalis DSM
           17393]
          Length = 714

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 86/235 (36%), Gaps = 30/235 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR+ +++R I           GS +   G+T  L T TL  K+   I +        
Sbjct: 319 RLDGRKTDEIRPIWSEISYLPGPHGSAIFTRGETQSLATVTLGTKLDEKIIDDVLEHGKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +         + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKQPVSGIAMGLIKNPGEDKY 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             + D+   ED   D+D     T +G I   Q   +    S D     LN AK+ 
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKNG-ITATQMDIKVDGLSFDILERALNQAKEG 533



 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 88/236 (37%), Gaps = 27/236 (11%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       I+L      K A+GS +++ G+T LL T    ++ VP            
Sbjct: 12  PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            ++    R  G   KRE   GR         R++ RALR +   +     ++ ++  +  
Sbjct: 66  EKFSAFGRFPGGFTKRE---GRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNIILYS 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           V + D L  +   +          G ++ +    + G  +++  + 
Sbjct: 121 ADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINPTFD 169

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +    D+D     T   +I+ V+G  E +  S+      +  A + I    + QK+
Sbjct: 170 QLEKADMDLMVGATYE-NIMMVEG--EMSEVSELDLLNAMKAAHEAIKVQCQAQKE 222


>gi|209551633|ref|YP_002283550.1| polynucleotide phosphorylase/polyadenylase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|226702681|sp|B5ZW24|PNP_RHILW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|209537389|gb|ACI57324.1| Polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 712

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 89/243 (36%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR  + +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 316 RIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++  +      + +  +
Sbjct: 376 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPTAEQFPYTLRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   + A  +++     L  A+   A ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKIAGITEEIMKVALGQAQGGRAHILGEMAKA 541

Query: 238 ISN 240
           I+ 
Sbjct: 542 ITE 544



 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 70/220 (31%), Gaps = 27/220 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ L  +G+T +L T       +     +     +   T   G +
Sbjct: 14  RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +   + R+I R +R +         Q+++       +    
Sbjct: 74  P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVVQHDLENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             ++  A  AL                     G V     G + G  +++    E     
Sbjct: 128 VLSMVAASAAL-------------TLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESS 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           +D     T    ++     +E    +++     +      
Sbjct: 175 LDLVVAGTYDAVLMV---ESEAKELNEEVMLGAVMFGHKG 211


>gi|116328709|ref|YP_798429.1| polynucleotide phosphorylase/polyadenylase [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|122283506|sp|Q04ZJ9|PNP_LEPBL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116121453|gb|ABJ79496.1| Polyribonucleotide nucleotidyltransferase [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
          Length = 696

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 85/226 (37%), Gaps = 30/226 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----N 72
           T   +K A G+ + K G+  LL T    +             +T EY     S G     
Sbjct: 18  TGNWAKQAHGAVVYKSGNLVLLATVCAADDA---KEGQDFFPLTCEYTEKLYSVGRFPGG 74

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA--AI 130
             KREA   +       I R+I R +R +         Q+ +   V+ ADG    A  A+
Sbjct: 75  YFKREA---KPPEHEILISRIIDRPIRPLFPEGYFCEVQLQV--QVLSADGDVSVAGHAL 129

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
             A VAL                     G +A    G + G  I++    E    D+D  
Sbjct: 130 NAASVAL-------------TISDIPFNGPIAGARIGRINGELILNPTTKEIVNSDLDLV 176

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              T + HIV ++G A+    S +   + L  A+  IA+ + LQ++
Sbjct: 177 VAGTKT-HIVMIEGEAKE--LSNEEMLSALRFAQKHIAEFVTLQEE 219



 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 27/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           +R  GR+ +++R IS+         GS +   G T  L   TL           +   K 
Sbjct: 313 VRFDGRRLDEIRPISVEINPLPGPHGSSVFTRGQTQSLGVVTLGTGSDNQRYETLEGQKE 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G  V+R +  GR   R      +  RAL+ V+  S      I +  
Sbjct: 373 KSFMLHYNFPAFSVGE-VRRSSGPGR---REIGHGNLAERALKLVLPKSEEFPYVIRVVS 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++++++G +  A++    +AL                   +KG VA I+ G+        
Sbjct: 429 EILESNGSSSMASVCSGSLALMAAGV-------------PIKGSVAGIAMGLFSDSSGKY 475

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S D   ++   A+     ++
Sbjct: 476 AVLSDIAGLEDHFGDMDCKIAGTRKG-ITAFQMDLKVTGVSFDVLESVFEQAQRGRFHIL 534

Query: 232 KLQKDVISN 240
            + +  IS 
Sbjct: 535 DIMEKHISK 543


>gi|227517327|ref|ZP_03947376.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           TX0104]
 gi|256960415|ref|ZP_05564586.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           Merz96]
 gi|257417198|ref|ZP_05594192.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           AR01/DG]
 gi|257420479|ref|ZP_05597469.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           X98]
 gi|293383916|ref|ZP_06629818.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           R712]
 gi|293388310|ref|ZP_06632824.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           S613]
 gi|300861666|ref|ZP_07107750.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TUSoD Ef11]
 gi|307286415|ref|ZP_07566521.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0109]
 gi|312906743|ref|ZP_07765743.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           DAPTO 512]
 gi|312910719|ref|ZP_07769558.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           DAPTO 516]
 gi|227075197|gb|EEI13160.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           TX0104]
 gi|256950911|gb|EEU67543.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           Merz96]
 gi|257159026|gb|EEU88986.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           ARO1/DG]
 gi|257162303|gb|EEU92263.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           X98]
 gi|291078743|gb|EFE16107.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           R712]
 gi|291082320|gb|EFE19283.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           S613]
 gi|295114393|emb|CBL33030.1| polyribonucleotide nucleotidyltransferase [Enterococcus sp. 7L76]
 gi|300849127|gb|EFK76880.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TUSoD Ef11]
 gi|306502428|gb|EFM71701.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0109]
 gi|310627391|gb|EFQ10674.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           DAPTO 512]
 gi|311288982|gb|EFQ67538.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           DAPTO 516]
 gi|315143300|gb|EFT87316.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX2141]
 gi|315148895|gb|EFT92911.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX4244]
 gi|315154770|gb|EFT98786.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0043]
 gi|315164498|gb|EFU08515.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX1302]
          Length = 704

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 89/240 (37%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  L+  T     E ++   +     
Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL  ++         I +  
Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQIIPSEEDFPYTIRLVA 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      L+ AK    ++++
Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILE 539



 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 91/232 (39%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L    A+ E K V  +     +       G +P
Sbjct: 14  RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   R+    R+I R +R +         QI      +  D     
Sbjct: 74  ---GGFIKRE---GRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVDQDCTPEM 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  +++    +    D+
Sbjct: 128 AAMFGSSLALA-------------ISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDI 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    D I +L+  Q+++++
Sbjct: 175 ELTVAGTKEA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223


>gi|54650534|gb|AAV36846.1| RH44882p [Drosophila melanogaster]
          Length = 771

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 91/250 (36%), Gaps = 17/250 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56
           +R  GR  +Q+R IS    + K   GS L + G T +  T +L+ +      ++      
Sbjct: 354 LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDS 413

Query: 57  GWITA-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           G + A      Y   P +TG   +     G  G R      +  R+L   +         
Sbjct: 414 GGLKAKNFMLHYEFPPYATGEVGR----IGPVGRREMGHGALAERSLLPTLPND--YPFT 467

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
           + +  +V++++G +  A++ G  +AL D    +   +    +  V K      +  +   
Sbjct: 468 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTK-FENDDTKHLQDY 526

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G    +Q   +            L  A D  ++++
Sbjct: 527 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSNIL 585

Query: 232 KLQKDVISNE 241
            +  + I   
Sbjct: 586 DIMSEAIREP 595



 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 90/234 (38%), Gaps = 30/234 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--ITAEYGMLPR 68
           R ++ +   ++++A G+ + + GDT ++ TA     V     N   G+  +  +Y +   
Sbjct: 50  RNMTFSSGRLARFANGTAVCQMGDTAVMVTA-----VAKAKPNPGQGFMPLVVDYRLKNA 104

Query: 69  STGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           ++G R+    +    G   +EI   R+I R+LR +         Q++ +   + A     
Sbjct: 105 ASG-RIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVHSPD 163

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI  A +AL                     G + A+  G+  G  +++    E  T  
Sbjct: 164 VLAINAASMALS-------------LSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQ 210

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN----LAKDRIADLIKLQKD 236
           +D     T    +V ++G  +     Q      +      A+  I ++ +LQK 
Sbjct: 211 LDLVVSATKQNLVVMLEG--KGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKA 262


>gi|42632644|gb|AAS22253.1| polynucleotide phosphorylase [Aster yellows witches'-broom
           phytoplasma]
          Length = 716

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 88/251 (35%), Gaps = 28/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R   R+  ++R +     +   A GS L   G T  L   TL    E K+   + + ++
Sbjct: 325 IRPDKRELEEIRTLESQIDLLPRAHGSALFTRGKTQSLAAVTLGCLSESKIIDGLSDEQN 384

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  A S R+ G       +  +A+  V+         I +  
Sbjct: 385 KRFMLHYNFPPFSVGAVGRYTAPSRREIGHGT----LAEKAISQVLPEEKDFPYTIRVVS 440

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++++++G +  A +  + +AL                   LK  VA IS G++       
Sbjct: 441 EILESNGSSSQATVCSSSLAL-------------MASGVPLKKAVAGISVGLVFDQETNK 487

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T+ G I  +Q   +               AK     +
Sbjct: 488 YVILSDIQGLEDHVGDMDLKIAGTNKG-ITALQMDLKIQGIPFKILQEAFLQAKKGRLHI 546

Query: 231 IKLQKDVISNE 241
           ++     IS  
Sbjct: 547 LEQMNQTISQP 557



 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 67/217 (30%), Gaps = 22/217 (10%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
            ++  + S LV++ DT +LTT     K      N     +T  Y     + G        
Sbjct: 22  YARNVDSSILVRYQDTVVLTTMVFSRK----PNNLDFLPLTVIYQEKLYAAGKIPGSFLT 77

Query: 80  SGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137
             R G    EI   R+I R+LR +         Q+I     +  D               
Sbjct: 78  PRRGGSNDHEILTSRLIDRSLRPLFPDYFQQEVQVINTVLSLDPD-------------FK 124

Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197
            +    +    +           ++ +  G +    I++    + +   +      T   
Sbjct: 125 SELASMLGSSLSLLISEIPFFEAISGVYVGKINNEFIINPTLQQLANSTLHLIVAGTKH- 183

Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           ++  ++  A     S+  F   +N A   I  L   Q
Sbjct: 184 NVTMIE--AHANEVSEQDFLEAINFAHQYIKKLCLFQ 218


>gi|229547506|ref|ZP_04436231.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           TX1322]
 gi|229548082|ref|ZP_04436807.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           ATCC 29200]
 gi|255970737|ref|ZP_05421323.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T1]
 gi|256618176|ref|ZP_05475022.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           ATCC 4200]
 gi|256761105|ref|ZP_05501685.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T3]
 gi|256854742|ref|ZP_05560106.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T8]
 gi|256958346|ref|ZP_05562517.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           DS5]
 gi|256962906|ref|ZP_05567077.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           HIP11704]
 gi|257078344|ref|ZP_05572705.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           JH1]
 gi|257091307|ref|ZP_05585668.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           CH188]
 gi|294780196|ref|ZP_06745568.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           PC1.1]
 gi|307270429|ref|ZP_07551730.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX4248]
 gi|307273930|ref|ZP_07555142.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0855]
 gi|307276709|ref|ZP_07557826.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX2134]
 gi|312905366|ref|ZP_07764481.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0635]
 gi|312953165|ref|ZP_07772012.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0102]
 gi|229306768|gb|EEN72764.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           ATCC 29200]
 gi|229307348|gb|EEN73335.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecalis
           TX1322]
 gi|255961755|gb|EET94231.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T1]
 gi|256597703|gb|EEU16879.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           ATCC 4200]
 gi|256682356|gb|EEU22051.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T3]
 gi|256710302|gb|EEU25346.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T8]
 gi|256948842|gb|EEU65474.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           DS5]
 gi|256953402|gb|EEU70034.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           HIP11704]
 gi|256986374|gb|EEU73676.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           JH1]
 gi|257000119|gb|EEU86639.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           CH188]
 gi|294452739|gb|EFG21169.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           PC1.1]
 gi|306506608|gb|EFM75761.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX2134]
 gi|306509409|gb|EFM78467.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0855]
 gi|306513207|gb|EFM81838.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX4248]
 gi|310628908|gb|EFQ12191.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0102]
 gi|310631390|gb|EFQ14673.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0635]
 gi|315031249|gb|EFT43181.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0017]
 gi|315036532|gb|EFT48464.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0027]
 gi|315152914|gb|EFT96930.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0031]
 gi|315157487|gb|EFU01504.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0312]
 gi|315162544|gb|EFU06561.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0645]
 gi|315167175|gb|EFU11192.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX1341]
 gi|315171031|gb|EFU15048.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX1342]
 gi|315173459|gb|EFU17476.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX1346]
 gi|315578552|gb|EFU90743.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0630]
 gi|323478998|gb|ADX78437.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           62]
 gi|327536187|gb|AEA95021.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           OG1RF]
 gi|329571128|gb|EGG52834.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX1467]
          Length = 704

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 89/240 (37%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  L+  T     E ++   +     
Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL  ++         I +  
Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQIIPSEEDFPYTIRLVA 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      L+ AK    ++++
Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILE 539



 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 92/232 (39%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L    A+ E K V  +     +       G +P
Sbjct: 14  RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   R+    R+I R +R +         QI      ++ D     
Sbjct: 74  ---GGFIKRE---GRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVEQDCTPEM 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  +++    +    D+
Sbjct: 128 AAMFGSSLALA-------------ISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDI 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    D I +L+  Q+++++
Sbjct: 175 ELTVAGTKEA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223


>gi|117926996|ref|YP_867613.1| polynucleotide phosphorylase/polyadenylase [Magnetococcus sp. MC-1]
 gi|187610282|sp|A0LE14|PNP_MAGSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|117610752|gb|ABK46207.1| Polyribonucleotide nucleotidyltransferase [Magnetococcus sp. MC-1]
          Length = 701

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 85/229 (37%), Gaps = 18/229 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I+    +     G+ L   G+T  + T TL    +E++   +      
Sbjct: 318 RVDGRGLTDIRPIACEVSILPRVHGTALFTRGETQAIATVTLGTSRDEQIVETLSGEYRD 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G   +     G  G R     ++  RAL ++V  + +    + I  +
Sbjct: 378 RFYLNYTFPPYCVGETGR----MGAPGRREIGHGKLATRALTAIVPSAEVFPYTLRITSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + GA +A+ D    ++       +  V +G   A+         + D+
Sbjct: 434 ITESNGSSSMATVCGAVLAMQDAGVPIKAPVAGIAMGLVKEGDAYAV---------LSDI 484

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
              ED   D+D        G I  +Q   +    +++     L  A+  
Sbjct: 485 LGDEDHLGDMDFKVAGNADG-ITALQMDIKITGITREIMAKALEQARAG 532



 Score = 81.7 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 87/233 (37%), Gaps = 29/233 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           I+L    V++ A G+ +V +GDT +L TA    ++      +  +  +       G +P 
Sbjct: 16  ITLETGRVARQANGAVMVTYGDTVVLVTAVAETSMRAGQDFFPLSVHYQEKFWAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE    R   R     R+I R +R +     +   Q++        D  +  A
Sbjct: 75  --GGFIKRET---RPSEREVLTSRLIDRPIRPLFPKGFMNETQVVAQVLSYDPDYPSDIA 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G   AL                    +G +     G + G P+++    + +   +D
Sbjct: 130 ALIGCSAALA-------------LSGVPFEGPIGGARVGFIDGKPVLNPTVDQLAASRLD 176

Query: 189 ANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                T S   +VE    +E    S+D     +  A +    +I   +++++ 
Sbjct: 177 LVVAGTRSAVTMVE----SEVDFLSEDEMLDCVMFAHESFQPVITAIEELVAE 225


>gi|304404299|ref|ZP_07385961.1| polyribonucleotide nucleotidyltransferase [Paenibacillus
           curdlanolyticus YK9]
 gi|304347277|gb|EFM13109.1| polyribonucleotide nucleotidyltransferase [Paenibacillus
           curdlanolyticus YK9]
          Length = 701

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 87/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR  N++R I     +     GS L   G T  L   T  A  + ++   I   + 
Sbjct: 313 VRPDGRGLNEIRPIDCDVALLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGISPEES 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G            G R      +  RAL  V+   +     I +  
Sbjct: 373 KRFMHHYNFPPFSVGEAR----PLRPPGRREIGHGALGERALSKVIPPESEFPYTIRLVS 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY--- 172
           + ++++G T  A+I  + +A+ D                 +K  VA I+ G++  G    
Sbjct: 429 ECLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLIKDGEHFS 475

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +     +      L  AK+    ++ 
Sbjct: 476 ILSDIQGMEDHLGDMDFKVAGTAEG-VTAIQMDIKIEGIDRAILTQALEQAKEGRMHILG 534

Query: 233 LQKDVISNE 241
              +V+   
Sbjct: 535 KMLEVMGEP 543



 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 80/225 (35%), Gaps = 26/225 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R + L    ++K A  +  V++G+T +L T T     + +  +     +       G +P
Sbjct: 12  RPLVLETGRLAKQANAAVTVRYGETVVLCTVTASSEPKDLDFFPLTVNYEEKLYAVGKIP 71

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+  R +R +         QI+     +  D     
Sbjct: 72  ---GGFIKRE---GRPSEKAILSSRLTDRPIRPLFPDGFRNDVQIVNLVMSVDQDCSPEI 125

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G   AL                     G +  +  G + G  +++    +++  D+
Sbjct: 126 AAMIGTSAALS-------------ISDVPFNGPIGGVVVGRIDGQFVINPTVEQEAQSDI 172

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
               V      I+ V+  AE     +      +    D I +++K
Sbjct: 173 -FVVVAGTKDAIMMVE--AEADEVPESVMLEAIMFGHDEIKNIVK 214


>gi|189220135|ref|YP_001940775.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Methylacidiphilum infernorum V4]
 gi|189186993|gb|ACD84178.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Methylacidiphilum infernorum V4]
          Length = 669

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 89/253 (35%), Gaps = 33/253 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R  GR    +R I++   V   + GS L   G+T  L  ATL      +++  +    + 
Sbjct: 275 RCDGRGPEDIRPIAIETSVVPRSHGSSLFCRGETQALCMATLASLNEAQELDAYGGGEQS 334

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +    S R+ G       +  R+L  V+         I +  
Sbjct: 335 KRFLLHYFFPPFSVGEVGRITGQSRREIGHG----ALAERSLLPVIPSETDFPYAIRVSS 390

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171
           ++++++G T  A + G  +AL D                 LK  VA IS G++ G     
Sbjct: 391 EILESNGSTSMATVCGGSLALMDAGV-------------PLKTSVAGISVGLVKGKEEDF 437

Query: 172 -----YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                  + D+   ED   D+D     T  G I   Q   +      D     +  ++  
Sbjct: 438 DWSRYCLLTDILGLEDHYGDMDFKIAGTRKG-ITGFQLDLKLRGIPLDVMAKAIFQSQKA 496

Query: 227 IADLIKLQKDVIS 239
              ++     VI+
Sbjct: 497 RMVILDCMDKVIN 509



 Score = 95.2 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 79/208 (37%), Gaps = 30/208 (14%)

Query: 40  TATLEE---KVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR 96
             ++ E            ++    A  G  P   G   ++E   GR   +     RMI R
Sbjct: 4   AVSVTELKEDQDFLPLQVEYREKAAAAGRFP---GGYFRKE---GRPTDKEILTSRMIDR 57

Query: 97  ALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAWVALHDCLQHMEDCSNKFQLS 154
            LR +         QI+    ++ ADG       AI GA  AL                 
Sbjct: 58  PLRPLFPKGYFYETQIL--GTLLSADGQNDPDVMAINGASAAL-------------MVSD 102

Query: 155 QVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
               G V A+  G + G  I++  + E    D+D  +V ++  + + ++GSA    F ++
Sbjct: 103 IPFYGPVGAVRIGQIDGRWIINPTHREREISDIDLVYVGSEH-YPLMIEGSARE--FPEE 159

Query: 215 HFFAMLNLAKDRIADLIKLQKDVISNEV 242
            F   L  A   + ++I  QK+ ++ +V
Sbjct: 160 EFVKALEFAHQHVQEVIAAQKE-LAEKV 186


>gi|24651641|ref|NP_651867.2| CG11337, isoform A [Drosophila melanogaster]
 gi|24651643|ref|NP_733429.1| CG11337, isoform B [Drosophila melanogaster]
 gi|281362905|ref|NP_001163783.1| CG11337, isoform D [Drosophila melanogaster]
 gi|23172770|gb|AAF57151.2| CG11337, isoform A [Drosophila melanogaster]
 gi|23172771|gb|AAN14273.1| CG11337, isoform B [Drosophila melanogaster]
 gi|272477256|gb|ACZ95076.1| CG11337, isoform D [Drosophila melanogaster]
          Length = 771

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 91/250 (36%), Gaps = 17/250 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56
           +R  GR  +Q+R IS    + K   GS L + G T +  T +L+ +      ++      
Sbjct: 354 LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDS 413

Query: 57  GWITA-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           G + A      Y   P +TG   +     G  G R      +  R+L   +         
Sbjct: 414 GGLKAKNFMLHYEFPPYATGEVGR----IGPVGRREMGHGALAERSLLPTLPND--YPFT 467

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
           + +  +V++++G +  A++ G  +AL D    +   +    +  V K      +  +   
Sbjct: 468 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTK-FENDDTKHLQDY 526

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G    +Q   +            L  A D  ++++
Sbjct: 527 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSNIL 585

Query: 232 KLQKDVISNE 241
            +  + I   
Sbjct: 586 DIMSEAIREP 595



 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 90/234 (38%), Gaps = 30/234 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--ITAEYGMLPR 68
           R ++ +   ++++A G+ + + GDT ++ TA     V     N   G+  +  +Y +   
Sbjct: 50  RNMTFSSGRLARFANGTAVCQMGDTAVMVTA-----VAKAKPNPGQGFMPLVVDYRLKNA 104

Query: 69  STGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           ++G R+    +    G   +EI   R+I R+LR +         Q++ +   + A     
Sbjct: 105 ASG-RIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVHSPD 163

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI  A +AL                     G + A+  G+  G  +++    E  T  
Sbjct: 164 VLAINAASMALS-------------LSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQ 210

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN----LAKDRIADLIKLQKD 236
           +D     T    +V ++G  +     Q      +      A+  I ++ +LQK 
Sbjct: 211 LDLVVSATKQNLVVMLEG--KGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKA 262


>gi|328675736|gb|AEB28411.1| Polyribonucleotide nucleotidyltransferase [Francisella cf. novicida
           3523]
          Length = 693

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 19/245 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I++   V     GS L   G+T  L   TL       +  +  G    
Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376

Query: 62  E----YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                Y   P S G   +   A   R+ G +     +  RA ++V          + +  
Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKRREIGHA----NLAKRATQAVFPNEEAYPYVVRVVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A + G+ +++ D    + +      +  +  G   A+         + D
Sbjct: 433 EILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAV---------LSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G +  +Q   +    S++     L  A+     ++ +  +
Sbjct: 484 ILGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNE 542

Query: 237 VISNE 241
           VI   
Sbjct: 543 VIKEH 547



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 30/221 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           T  +++ A+GS  V  G+  +L T     ++ +    +  +  +   T   G +P   G 
Sbjct: 19  TGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGADFFPLSVHYLEKTYAAGKIP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            ++RE   GR       I R+I R++R           QI+    V+  DG       A+
Sbjct: 76  FLRRE---GRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVAT--VLSYDGAFSPDILAL 130

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  +L       +D              +A +  G   G  I++ +  +    D+D  
Sbjct: 131 IGASASLAISGAPYDDV-------------IAGVRVGYTNGKYILNPNKQDLKDSDLDLV 177

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
              TD   I+ V+  +E  +  +      +  A   +  +I
Sbjct: 178 VSGTDDA-ILMVE--SEANSLPESVMLGGILYAHKHLKTII 215


>gi|329956655|ref|ZP_08297228.1| polyribonucleotide nucleotidyltransferase [Bacteroides clarus YIT
           12056]
 gi|328524027|gb|EGF51103.1| polyribonucleotide nucleotidyltransferase [Bacteroides clarus YIT
           12056]
          Length = 753

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR+  ++R I           GS +   G+T  L+T TL  K+   I +        
Sbjct: 356 RLDGRKTTEIRPIWCEIGYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 415

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +         + +  D
Sbjct: 416 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 469

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 470 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNAGEEKY 516

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     L  AK+    ++
Sbjct: 517 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILEKALLQAKEGREYIL 575

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 576 SKITECIAEP 585



 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 28/242 (11%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       I+L      K A+GS +++ G+T LL T    ++ VP            
Sbjct: 49  PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 102

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            ++    R  G   KRE   GR         R++ RALR +   +      + ++  +  
Sbjct: 103 EKFSAFGRFPGGFTKRE---GRASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIILFS 157

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           V + D L  +   +          G ++ +    + G  +++  + 
Sbjct: 158 ADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINPTFE 206

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +    D+D     T   +I+ V+G  E    S+      +  A + I    K Q + ++ 
Sbjct: 207 QLEKADMDLMVGATYE-NIMMVEG--EMDEVSEKDLLEAMKAAHEAIKIQCKAQME-LAE 262

Query: 241 EV 242
           EV
Sbjct: 263 EV 264


>gi|325291527|ref|YP_004277391.1| polynucleotide phosphorylase [Agrobacterium sp. H13-3]
 gi|325059380|gb|ADY63071.1| polynucleotide phosphorylase [Agrobacterium sp. H13-3]
          Length = 715

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR  + +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 316 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++  +      + +  +
Sbjct: 376 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPTAEQFPYTLRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   + A  +++     L  A+     ++    + 
Sbjct: 483 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEMANA 541

Query: 238 ISN 240
           I+ 
Sbjct: 542 ITE 544



 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 76/229 (33%), Gaps = 31/229 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + L    V++ A+G+ +  +G+T +L T     + +     +     +   T   G +
Sbjct: 14  RPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR   +   + R+I R +R +         Q+++   VIQ D    
Sbjct: 74  P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVT--VIQHDLEND 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++  A  AL                     G V     G + G  +++    E   
Sbjct: 126 PDVLSMVAASAALTLSGI-------------PFMGPVGGARVGYINGEYVLNPHLDEMDE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
             +D     T    ++     +E    ++D     +         +I  
Sbjct: 173 SVLDLVVAGTQDAVLMV---ESEAKELNEDVMLGAVMFGHRGFQPVIDA 218


>gi|212709941|ref|ZP_03318069.1| hypothetical protein PROVALCAL_00991 [Providencia alcalifaciens DSM
           30120]
 gi|212687453|gb|EEB46981.1| hypothetical protein PROVALCAL_00991 [Providencia alcalifaciens DSM
           30120]
          Length = 685

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 98/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +    + +   G  T 
Sbjct: 294 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTD 353

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 354 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSQAEFPYTVRVVSE 409

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 410 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDDFVV 456

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++  
Sbjct: 457 LSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITREIMQVALNQAKGARLHILST 515

Query: 234 QKDVISNE 241
            +  I++ 
Sbjct: 516 MEQAINSP 523



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 65/185 (35%), Gaps = 23/185 (12%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           +++ A  + +V   DT +  TA     ++E    +     +   T   G +P   G+  +
Sbjct: 2   IARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNYQERTYAAGRIP---GSFFR 58

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE   GR G     + R+I R LR +     L   QII     +         A+ GA  
Sbjct: 59  RE---GRPGEGETLVARLIDRPLRPLFPEGFLNEIQIIATVVSVNPQVNPDIVAMIGASA 115

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
           AL                     G + A   G +    +++    E  +  +D     TD
Sbjct: 116 ALA-------------LSGVPFNGPIGAARVGFINDQYVLNPTADELKSSRLDLVVAGTD 162

Query: 196 SGHIV 200
           S  ++
Sbjct: 163 SAVLM 167


>gi|222823533|ref|YP_002575107.1| polyribonucleotide nucleotidyltransferase [Campylobacter lari
           RM2100]
 gi|257096671|sp|B9KFM1|PNP_CAMLR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|222538755|gb|ACM63856.1| polyribonucleotide nucleotidyltransferase [Campylobacter lari
           RM2100]
          Length = 702

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 84/242 (34%), Gaps = 22/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
           R  GR    +R+I +   +   A GSCL   G T  L  ATL       +      +N  
Sbjct: 322 RADGRGLKDVRKIDIETNILPSAHGSCLFTRGQTQALVVATLGNDNDAQMSDMLTEKNPI 381

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G     +A   R+ G       +  RAL   VD   +    I + 
Sbjct: 382 CEKFMVNYNFPGFSVGEASPIKAPGRRELGHG----NLAKRALYPSVDADYIH--TIRLV 435

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A + G  +AL       E       +  V +    AI         + 
Sbjct: 436 SEILESNGSSSMATVCGGALALRAAGVKSEKLVAGVAMGLVFEEEKYAI---------LT 486

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     +  G I  +Q   +     Q      L  AK+    ++ L +
Sbjct: 487 DIMGLEDHDGDMDFKVAGSHDG-ITALQMDIKLGGIEQKVLQEALYQAKEARGYILNLMQ 545

Query: 236 DV 237
           + 
Sbjct: 546 EA 547



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 81/226 (35%), Gaps = 44/226 (19%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72
           V+K A G+ L++  +  +L T   EEK    +       +T +Y       G +P   G 
Sbjct: 19  VAKQAAGAVLMQEKNAVVLATVAREEK----MVEEDFLPLTVQYIEKAYAAGKIP---GG 71

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            VKRE    + G       R+I R+LR +         QI++   V+ AD     +  ++
Sbjct: 72  YVKRET---KPGDSETLSARIIDRSLRPLFPKGYAYPTQIVV--MVLSADPEVDLQVMSL 126

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
             A VAL+                  +K  V  +  G +    +++    E     +D  
Sbjct: 127 NAASVALY-------------LSDIPIKAPVCGVRIGRINNEFVLNPSNSELKNSTLDL- 172

Query: 191 FVMTDSGHIVEVQGSAER---------ATFSQDHFFAMLNLAKDRI 227
           +V      ++ ++  A              S+D     L+ A   I
Sbjct: 173 YVAGVKDELLMIEMRALSNKKDNQHCMNELSEDDTLKALDFASSAI 218


>gi|171912768|ref|ZP_02928238.1| polynucleotide phosphorylase/polyadenylase [Verrucomicrobium
           spinosum DSM 4136]
          Length = 707

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 92/231 (39%), Gaps = 31/231 (13%)

Query: 13  EISLTRRVSKY-AEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
           +I+         A+G+  V+ GDT ++ TA     ++E    +  + ++    A  G  P
Sbjct: 14  DITFETGKLAKLADGAVTVRQGDTIVIVTAVSATKVKEGQDFFPLSVEYKEKAAAAGKFP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
              G   KRE   GR   +     RM  R LR +         QI+    ++ ADG    
Sbjct: 74  ---GGYFKRE---GRPTEKEILTCRMTDRPLRPLFPKGYYYDTQIVA--LLLSADGENDA 125

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              +I GA  AL                     G V A+  G + G  +++  + + +  
Sbjct: 126 DIISINGASAALC-------------VSDIPFAGPVGAVRVGRVNGQFVLNPTHSQRAKS 172

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D+D  +V   S  ++ ++G+A      +  F   L  A++ +  L+ +Q++
Sbjct: 173 DLDLVYVGNKS-EVIMIEGAANE--LPEAEFIKALAFAQEHVQVLVAVQEE 220



 Score = 99.0 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 93/253 (36%), Gaps = 33/253 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKH 56
           R  GR  +Q+R +S    +   + GS L   G+T  L  ATL      +++  +      
Sbjct: 314 RADGRGIDQLRPLSGETGLIPRSHGSALFARGETQALALATLAPLDEAQEMDNYAGGETT 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +    + R+ G       +  R++  VV  S      + +  
Sbjct: 374 KRFILHYNFPPFSVGETGRFGGQNRREIGHG----ALAERSVEPVVPSSEDFPYAMRVSS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G T  A++    +AL D                 LK  VA IS G++  Y    
Sbjct: 430 EVMESNGSTSMASVCSGVMALLDAGV-------------PLKRPVAGISVGLVSEYDANN 476

Query: 173 ------PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                  ++D+   ED   D+D     T+ G +   Q   +            +  A   
Sbjct: 477 QMSRYLTMLDIIGSEDHFGDMDFKLCGTELG-VTGFQLDLKLPGIPLSILNEAIAKAVTG 535

Query: 227 IADLIKLQKDVIS 239
             +++++ K  I+
Sbjct: 536 RTNILEVMKSAIA 548


>gi|160944532|ref|ZP_02091760.1| hypothetical protein FAEPRAM212_02045 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444314|gb|EDP21318.1| hypothetical protein FAEPRAM212_02045 [Faecalibacterium prausnitzii
           M21/2]
          Length = 713

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 88/243 (36%), Gaps = 30/243 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  N++R ++    +     GS +   G T +LTT TL       + +      T 
Sbjct: 322 RVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTK 381

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G            G R      +  RAL  V+         I    +
Sbjct: 382 RYIHHYNFPPYSVGEAR----APRSPGRREIGHGALAERALVPVLPSLEEFPYTIRCVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           V+ ++G T  A+I G+ +AL D                 +K  VA ISCG++  G     
Sbjct: 438 VLSSNGSTSQASICGSTLALMDAGV-------------PIKAPVAGISCGLITEGERWMT 484

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IAD 229
           ++D+   ED   D+D     T  G I  +Q   +    + D         +      + +
Sbjct: 485 MLDIQGVEDFHGDMDFKVGGTRKG-ITAIQMDIKIDGLTYDIIAEAFEKCRKGRLYILDE 543

Query: 230 LIK 232
           +IK
Sbjct: 544 IIK 546



 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 79/237 (33%), Gaps = 31/237 (13%)

Query: 12  REISLTRRV---SKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYG 64
           R   +          A  S L+++G+T ++          E V  +  N ++       G
Sbjct: 25  RPFKVEMGKMCGLSNA--SALIRYGETCVMCNVVMSPKPREGVDFFPLNVEYEEKLYAAG 82

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+ ++RE   GR G R+    R++ R +R +          I +    +  D  
Sbjct: 83  RIP---GSFMRRE---GRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDPDCS 136

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
              A + GA +                       G +  +  G++ G  +++    +   
Sbjct: 137 PEIAGMIGASLVTA-------------VSDIPWNGPIGGVQVGLVDGEIVLNPTQEQRKV 183

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
            D+      T    IV ++  A      +D     +  A   I  +I+    +++  
Sbjct: 184 SDLALTVAAT-MDKIVMIEAGANE--VDEDTMLTAIKTAHVEIKKIIEFINKIVAER 237


>gi|254563353|ref|YP_003070448.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           extorquens DM4]
 gi|254270631|emb|CAX26635.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           extorquens DM4]
          Length = 748

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 90/241 (37%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     V   A GS L   G+T  L  ATL         +   G    
Sbjct: 316 RIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTGEDEQFIDALEGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R V+  +      I +  +
Sbjct: 376 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPVLPPAHEFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L D    +        +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     ++ G I  +Q   + A  +++     L  AKD  A ++      
Sbjct: 483 LGDEDHLGDMDFKVAGSEEG-ITSLQMDIKIAGITEEIMKIALAQAKDGRAHILGEMSKA 541

Query: 238 I 238
           +
Sbjct: 542 L 542



 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 79/236 (33%), Gaps = 38/236 (16%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R++ L    + + A+GS +  +G+T +L T  +  K P          +T  Y     + 
Sbjct: 14  RKLVLETGKTARQADGSVVATYGETTVLATV-VAGKEPK--AGIDFLPLTVNYQERAYAA 70

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G       KRE   GR   +   + R+I R +R +         Q+++       +    
Sbjct: 71  GRIPGGYFKRE---GRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                     G + A   G L G   ++    E +   
Sbjct: 128 IVAMVAASAAL-------------TLSGVPFMGPIGAARVGYLNGGYKLNPLVTEIAEST 174

Query: 187 VDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLN----LAKDRIAD 229
           +D     T    ++ V+  A+  +         F   HF  ++     LA+    +
Sbjct: 175 LDLVVAGTQDA-VLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKE 229


>gi|218532284|ref|YP_002423100.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           chloromethanicum CM4]
 gi|240140844|ref|YP_002965324.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           extorquens AM1]
 gi|254782727|sp|B7KN55|PNP_METC4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096722|sp|A9W8P8|PNP_METEP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218524587|gb|ACK85172.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium
           chloromethanicum CM4]
 gi|240010821|gb|ACS42047.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           extorquens AM1]
          Length = 745

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 90/241 (37%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     V   A GS L   G+T  L  ATL         +   G    
Sbjct: 316 RIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTGEDEQFIDALEGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R V+  +      I +  +
Sbjct: 376 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPVLPPAHEFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L D    +        +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     ++ G I  +Q   + A  +++     L  AKD  A ++      
Sbjct: 483 LGDEDHLGDMDFKVAGSEEG-ITSLQMDIKIAGITEEIMKIALAQAKDGRAHILGEMSKA 541

Query: 238 I 238
           +
Sbjct: 542 L 542



 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 79/236 (33%), Gaps = 38/236 (16%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R++ L    + + A+GS +  +G+T +L T  +  K P          +T  Y     + 
Sbjct: 14  RKLVLETGKTARQADGSVVATYGETTVLATV-VAGKEPK--AGIDFLPLTVNYQERAYAA 70

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G       KRE   GR   +   + R+I R +R +         Q+++       +    
Sbjct: 71  GRIPGGYFKRE---GRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                     G + A   G L G   ++    E +   
Sbjct: 128 IVAMVAASAAL-------------TLSGVPFMGPIGAARVGYLNGGYKLNPLVTEIAEST 174

Query: 187 VDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLN----LAKDRIAD 229
           +D     T    ++ V+  A+  +         F   HF  ++     LA+    +
Sbjct: 175 LDLVVAGTQDA-VLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKE 229


>gi|163853425|ref|YP_001641468.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           extorquens PA1]
 gi|163665030|gb|ABY32397.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium
           extorquens PA1]
          Length = 752

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 90/241 (37%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     V   A GS L   G+T  L  ATL         +   G    
Sbjct: 323 RIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTGEDEQFIDALEGTYKE 382

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R V+  +      I +  +
Sbjct: 383 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPVLPPAHEFPYTIRVVSE 438

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L D    +        +  +L+G   A+         + D+
Sbjct: 439 ITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAV---------LSDI 489

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     ++ G I  +Q   + A  +++     L  AKD  A ++      
Sbjct: 490 LGDEDHLGDMDFKVAGSEEG-ITSLQMDIKIAGITEEIMKIALAQAKDGRAHILGEMSKA 548

Query: 238 I 238
           +
Sbjct: 549 L 549



 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 79/236 (33%), Gaps = 38/236 (16%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R++ L    + + A+GS +  +G+T +L T  +  K P          +T  Y     + 
Sbjct: 21  RKLVLETGKTARQADGSVVATYGETTVLATV-VAGKEPK--AGIDFLPLTVNYQERAYAA 77

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G       KRE   GR   +   + R+I R +R +         Q+++       +    
Sbjct: 78  GRIPGGYFKRE---GRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLENDPD 134

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                     G + A   G L G   ++    E +   
Sbjct: 135 IVAMVAASAAL-------------TLSGVPFMGPIGAARVGYLNGGYKLNPLVTEIAEST 181

Query: 187 VDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLN----LAKDRIAD 229
           +D     T    ++ V+  A+  +         F   HF  ++     LA+    +
Sbjct: 182 LDLVVAGTQDA-VLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKE 236


>gi|257083264|ref|ZP_05577625.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           Fly1]
 gi|257417915|ref|ZP_05594909.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T11]
 gi|256991294|gb|EEU78596.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           Fly1]
 gi|257159743|gb|EEU89703.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           T11]
          Length = 704

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 89/240 (37%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  L+  T     E ++   +     
Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL  ++         I +  
Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQIIPSEEDFPYTIRLVA 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      L+ AK    ++++
Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILE 539



 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 91/232 (39%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L    A+ E K V  +     +       G +P
Sbjct: 14  RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   R+    R+I R +R +         QI      +  D     
Sbjct: 74  ---GGFIKRE---GRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVDQDCTPEM 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  +++    +    D+
Sbjct: 128 AAMFGSSLALA-------------ISDIPFDGPIAGVDVGRIDGEYVLNPTVEQAEQTDI 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    D I +L+  Q+++++
Sbjct: 175 ELTVAGTKEA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223


>gi|85057750|ref|YP_456666.1| polynucleotide phosphorylase/polyadenylase [Aster yellows
           witches'-broom phytoplasma AYWB]
 gi|123725338|sp|Q2NJ06|PNP_AYWBP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|84789855|gb|ABC65587.1| polyribonucleotide nucleotidyltransferase [Aster yellows
           witches'-broom phytoplasma AYWB]
          Length = 715

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 88/251 (35%), Gaps = 28/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R   R+  ++R +     +   A GS L   G T  L   TL    E K+   + + ++
Sbjct: 324 IRPDKRELEEIRTLESQIDLLPRAHGSALFTRGKTQSLAAVTLGCLSESKIIDGLSDEQN 383

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  A S R+ G       +  +A+  V+         I +  
Sbjct: 384 KRFMLHYNFPPFSVGAVGRYTAPSRREIGHGT----LAEKAISQVLPEEKDFPYTIRVVS 439

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++++++G +  A +  + +AL                   LK  VA IS G++       
Sbjct: 440 EILESNGSSSQATVCSSSLAL-------------MASGVPLKKAVAGISVGLVFDQETNK 486

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T+ G I  +Q   +               AK     +
Sbjct: 487 YVILSDIQGLEDHVGDMDLKIAGTNKG-ITALQMDLKIQGIPFKILQEAFLQAKKGRLHI 545

Query: 231 IKLQKDVISNE 241
           ++     IS  
Sbjct: 546 LEQMNQTISQP 556



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 71/219 (32%), Gaps = 27/219 (12%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
            ++  + S LV++ DT +LTT     K      N     +T  Y     + G   K    
Sbjct: 22  YARNVDSSILVRYQDTVVLTTMVFSRK----PNNLDFLPLTVIYQEKLYAAG---KIPGS 74

Query: 80  SGRQGGRS--QEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
             R+ GRS   EI   R+I R+LR +         Q+I     +  D             
Sbjct: 75  FLRREGRSNDHEILTSRLIDRSLRPLFPDYFQQEVQVINTVLSLDPD------------- 121

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
              +    +    +           ++ +  G +    I++    + +   +      T 
Sbjct: 122 FKSELASMLGSSLSLLISEIPFFEAISGVYVGKINNEFIINPTLQQLANSTLHLIVAGTK 181

Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
             ++  ++  A     S+  F   +N A   I  L   Q
Sbjct: 182 H-NVTMIE--AHANEVSEQDFLEAINFAHQYIKKLCLFQ 217


>gi|325124334|gb|ADY83857.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 695

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 93/246 (37%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L T TL       +      TK  
Sbjct: 315 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +      R+ G      R+  R +++V+  +      I I  D
Sbjct: 375 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA ++L D                 LK  VA I+ G++  G     
Sbjct: 431 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G I  +Q   +    +++     LN A      ++  
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNE 536

Query: 234 QKDVIS 239
              VIS
Sbjct: 537 MNKVIS 542



 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 77/237 (32%), Gaps = 43/237 (18%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           ++ L    V++ A  + L+  G   +L         P          +T  Y     + G
Sbjct: 15  QVVLETGRVARQAN-TVLITMGGVTVLVAVV---AQPKAKAGQDFFPLTVNYQEKQYAAG 70

Query: 72  NRVKREAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDC----DVIQADG 123
              +     G++ GR+ E    I R+I R +R +         Q+          + AD 
Sbjct: 71  ---RIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSSDKTMDAD- 126

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
               AA+ G   AL                    +G +     G++ G  +++ ++ +  
Sbjct: 127 ---IAAMLGTSAALSIAGT-------------PFRGPIGGARVGLINGEYVLNPNFEQLK 170

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233
             D+D     T+S  ++     +E    S+D            + +A   I +    
Sbjct: 171 ESDLDLVVAGTESAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAA 224


>gi|317476402|ref|ZP_07935651.1| polyribonucleotide nucleotidyltransferase [Bacteroides eggerthii
           1_2_48FAA]
 gi|316907428|gb|EFV29133.1| polyribonucleotide nucleotidyltransferase [Bacteroides eggerthii
           1_2_48FAA]
          Length = 716

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR+  ++R I           GS +   G+T  L+T TL  K+   I +        
Sbjct: 319 RLDGRKTTEIRPIWCEIGYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +         + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNTGEEKY 479

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     L  AK+    ++
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILEKALLQAKEGREYIL 538

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 539 SKITECIAEP 548



 Score = 88.6 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 28/242 (11%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       I+L      K A+GS +++ G+T LL T    ++ VP            
Sbjct: 12  PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            ++    R  G   KRE   GR         R++ RALR +   +      + ++  +  
Sbjct: 66  EKFSAFGRFPGGFTKRE---GRASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIILFS 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           V + D L  +   +          G ++ +    + G  +++  + 
Sbjct: 121 ADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINPTFD 169

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +    D+D     T   +I+ V+G  E    S+      +  A + I    K Q + ++ 
Sbjct: 170 QLEKADMDLMVGATYE-NIMMVEG--EMNEVSEKDLLEAMKAAHEAIKIQCKAQME-LAE 225

Query: 241 EV 242
           EV
Sbjct: 226 EV 227


>gi|195505449|ref|XP_002099509.1| GE23317 [Drosophila yakuba]
 gi|194185610|gb|EDW99221.1| GE23317 [Drosophila yakuba]
          Length = 771

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 88/250 (35%), Gaps = 17/250 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------ 54
           +R  GR  +Q+R IS    + K   GS L + G T +  T +L+ +      ++      
Sbjct: 354 LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALES 413

Query: 55  ---KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
              K       Y   P +TG   +     G  G R      +  R+L   +         
Sbjct: 414 GGLKAKNFMLHYEFPPYATGEVGR----IGPVGRRELGHGALAERSLLPTLPND--YPFT 467

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
           + +  +V++++G +  A++ G  +AL D    +   +    +  V K      +  +   
Sbjct: 468 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKYE-NDDTKHLQDY 526

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G    +Q   +            L  A D  + ++
Sbjct: 527 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSKIL 585

Query: 232 KLQKDVISNE 241
            +  + I   
Sbjct: 586 DIMSEAIREP 595



 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 90/234 (38%), Gaps = 30/234 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--ITAEYGMLPR 68
           R ++ +   ++++A G+ + + GDT ++ TA     V     N   G+  +  +Y +   
Sbjct: 50  RNMTFSSGRLARFANGTAVCQMGDTAVMVTA-----VAKTKPNPGQGFMPLVVDYRLKNA 104

Query: 69  STGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           ++G R+    +    G   +EI   R+I R+LR +         Q++ +   + A     
Sbjct: 105 ASG-RIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVHSPD 163

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI  A +AL                     G + A+  G+  G  +++    E  +  
Sbjct: 164 VLAINAASMALS-------------LSDIPWNGPIGAVRVGLCDGEVLINPTRRELQSSQ 210

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN----LAKDRIADLIKLQKD 236
           +D     T    +V ++G  +     Q      +      A+  I ++ +LQK 
Sbjct: 211 LDLVVSATKQNLVVMLEG--KGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKA 262


>gi|156363851|ref|XP_001626253.1| predicted protein [Nematostella vectensis]
 gi|156213123|gb|EDO34153.1| predicted protein [Nematostella vectensis]
          Length = 276

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 86/255 (33%), Gaps = 25/255 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR     RE  L       A GS LVK G+T ++   T E   P        G+I 
Sbjct: 22  IRPDGRGLFDFRETILNVGSISTANGSALVKLGNTTVVCGVTAEFAEPA-ADVPNKGFIV 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QI 112
               + P  + +        G     +Q +   I   +    ++DL  L          +
Sbjct: 81  PNVDLPPLCSPSFR-----PGPPSEHAQVLSTFIDNLITNSQLIDLEDLCIVDGKLVWVL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV---------LKGHVAA 163
            ID   +  DG    AA+     AL +   H    + + +  +          LK    A
Sbjct: 136 YIDLMCLDYDGNVADAAVIAMLAALQNTRLHTVTINEETETPEPSENKDIHLKLKSMPVA 195

Query: 164 ISCGMLCGYPI-VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
           ++ G+     I  D    E+       + VMT +  +V V         +QD      ++
Sbjct: 196 VTFGIFDDDHIYCDPTDEEERLASGKVSVVMTTNNKVVAVHKPG-GPPLTQDKLQECFDV 254

Query: 223 AKDRIADLIKLQKDV 237
              R+ ++ +L    
Sbjct: 255 TTGRVLEVQQLIDAA 269


>gi|293610159|ref|ZP_06692460.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827391|gb|EFF85755.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 697

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 93/246 (37%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L T TL       +      TK  
Sbjct: 317 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +      R+ G      R+  R +++V+  +      I I  D
Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA ++L D                 LK  VA I+ G++  G     
Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G I  +Q   +    +++     LN A      ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNE 538

Query: 234 QKDVIS 239
              VIS
Sbjct: 539 MNKVIS 544



 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 77/237 (32%), Gaps = 43/237 (18%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           ++ L    V++ A  + L+  G   +L         P          +T  Y     + G
Sbjct: 17  QVVLETGRVARQAN-TVLITMGGVTVLVAVV---AQPKAKAGQDFFPLTVNYQEKQYAAG 72

Query: 72  NRVKREAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDC----DVIQADG 123
              +     G++ GR+ E    I R+I R +R +         Q+          + AD 
Sbjct: 73  ---RIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSSDKTMDAD- 128

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
               AA+ G   AL                    +G +     G++ G  +++ ++ +  
Sbjct: 129 ---IAAMLGTSAALSIAGT-------------PFRGPIGGARVGLINGEYVLNPNFEQLK 172

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233
             D+D     T+S  ++     +E    S+D            + +A   I +    
Sbjct: 173 ESDLDLVVAGTESAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAA 226


>gi|313206118|ref|YP_004045295.1| polyribonucleotide nucleotidyltransferase [Riemerella anatipestifer
           DSM 15868]
 gi|312445434|gb|ADQ81789.1| polyribonucleotide nucleotidyltransferase [Riemerella anatipestifer
           DSM 15868]
 gi|315022925|gb|EFT35948.1| Polyribonucleotide nucleotidyltransferase [Riemerella anatipestifer
           RA-YM]
 gi|325336437|gb|ADZ12711.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Riemerella anatipestifer RA-GD]
          Length = 711

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 85/237 (35%), Gaps = 32/237 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTK 55
           +RL GR   Q+R I         A GS +   G+T  LTT TL       ++   I    
Sbjct: 321 IRLDGRNNQQIRPIWSEVDYLPAAHGSSVFTRGETQSLTTVTLGSLMDANRIDSVITQHD 380

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P STG        S R+ G       +  RAL+ ++         I I 
Sbjct: 381 ER-FYLHYNFPPFSTGEARPLRGTSRREVGHG----NLAQRALKVMIPEET--PYTIRIV 433

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            D+++++G +  A +    +AL D    M                V+ I+ G++      
Sbjct: 434 SDILESNGSSSMATVCAGTLALMDAGIPMRK-------------PVSGIAMGLITDKESG 480

Query: 172 --YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
               + D+   ED   D+D     T++G I   Q   +    + D     L  AK+ 
Sbjct: 481 KWTVLSDILGDEDHLGDMDFKVTGTENG-ITACQMDIKIQGLTMDIMEQALMQAKNG 536



 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 80/237 (33%), Gaps = 29/237 (12%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           REI++      K A+G+ +VK G T LL T          V        +       G +
Sbjct: 17  REITIETGKLAKQADGAVVVKMGGTMLLATVVAAKEANPGVDFLPLTVDYREKFGAAGRI 76

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   GN  +REA   +         R++ R +R +         Q++I   +I  D    
Sbjct: 77  P---GNFFRREA---KPSDDEVLTMRLVDRVIRPLFPSDFHAEVQVMIS--LISYD---- 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                     + D L  +   +          G  + +      G   ++  + E     
Sbjct: 125 -------EKVMPDSLAGLAASAAIAITDIPFNGPFSEVRVIKKDGVLSINPSW-ETLQSG 176

Query: 187 VDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           V+ +  V      IV V+G  E    ++      +  A   I   ++ Q + ++ +V
Sbjct: 177 VELDIMVGATKDSIVMVEG--EMDEITEQEMLEAITFAHQEIKTQVEAQ-ERLAQKV 230


>gi|163739819|ref|ZP_02147226.1| Polyribonucleotide nucleotidyltransferase [Phaeobacter
           gallaeciensis BS107]
 gi|161386853|gb|EDQ11215.1| Polyribonucleotide nucleotidyltransferase [Phaeobacter
           gallaeciensis BS107]
          Length = 712

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 90/243 (37%), Gaps = 17/243 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I     +     GS L   G+T  L   TL         +  HG   +
Sbjct: 318 RIDGRSTTDVRAIESETGMLPRTHGSALFTRGETQALAVTTLGTGDDEQFIDALHGNFKS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+         I +  +
Sbjct: 378 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +++ D    ++       +  +L+      S  +     + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILED---DGSYAI-----LSDI 485

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     TD G I  +Q   + A  + +     L+ AKD    ++      
Sbjct: 486 LGDEDHLGDMDFKVAGTDKG-ITSLQMDIKVAGITPEIMEKALDQAKDGRLHILGEMAKA 544

Query: 238 ISN 240
           +S 
Sbjct: 545 LSE 547



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 81/231 (35%), Gaps = 33/231 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70
           ++L    V++ A+G+ +   G+T ++   T   +            +T  Y     +   
Sbjct: 16  LTLETGKVARQADGTVIATLGETSVMANVTFARQQKP---GQDFFPLTVHYQEKYYAAGK 72

Query: 71  --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++ C V+  D      
Sbjct: 73  VPGGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG--EDST 184
             A+  A  AL                     G +AA   G   G  +++      +D  
Sbjct: 128 MVAMIAASAALTLSGA-------------PFMGPIAAARVGFEGGEYVLNPTVDDMQDLR 174

Query: 185 IDVD--ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           ++ D   + V+  +   V +  S E    ++      +  A ++I  +I L
Sbjct: 175 LNPDQRLDLVVAGTKDAVMMVES-EAYELTEAEMLGAVKFAHEQIQPVIDL 224


>gi|89256821|ref|YP_514183.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. holarctica LVS]
 gi|156502987|ref|YP_001429052.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|167009860|ref|ZP_02274791.1| 3' exoribonuclease family, domain 2 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254368103|ref|ZP_04984123.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. holarctica 257]
 gi|290953517|ref|ZP_06558138.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295313209|ref|ZP_06803868.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. holarctica URFT1]
 gi|122500400|sp|Q2A269|PNP_FRATH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610265|sp|A7NDP3|PNP_FRATF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|89144652|emb|CAJ79976.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. holarctica LVS]
 gi|134253913|gb|EBA53007.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. holarctica 257]
 gi|156253590|gb|ABU62096.1| putative polyribonucleotide nucleotidyltransferase [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 693

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 19/245 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I++   V     GS L   G+T  L   TL       +  +  G    
Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376

Query: 62  E----YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                Y   P S G   +   A   R+ G +     +  RA ++V          + +  
Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKRREIGHA----NLAKRATQAVFPNEEAYPYVVRVVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A + G+ +++ D    + +      +  +  G   A+         + D
Sbjct: 433 EILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAV---------LSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G +  +Q   +    S++     L  A+     ++ +  +
Sbjct: 484 ILGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNE 542

Query: 237 VISNE 241
           VI   
Sbjct: 543 VIKEH 547



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 81/221 (36%), Gaps = 30/221 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           T  +++ A+GS  V  G+  +L T     ++ +    +  +  +   T   G +P   G 
Sbjct: 19  TGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            ++RE   GR       I R+I R++R           QI+    V+  DG       A+
Sbjct: 76  FLRRE---GRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVAT--VLSYDGAFSPDILAL 130

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  +L       +D              VA +  G   G  I++ +  +    D+D  
Sbjct: 131 IGASASLAISGAPYDDV-------------VAGVRVGYTNGKYILNPNKQDLRDSDLDLV 177

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
              T    I+ V+  +E  +  +      +  A   +  +I
Sbjct: 178 VSGTYDA-ILMVE--SEANSLPESVMLGGILYAHKHLKTII 215


>gi|27904826|ref|NP_777952.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
 gi|38605103|sp|Q89AF8|PNP_BUCBP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|27904224|gb|AAO27057.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
           Bp (Baizongia pistaciae)]
          Length = 693

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           +R+ GR ++++R + +   V     GS L   G+T  L + TL           +   K 
Sbjct: 314 IRIDGRNKDEIRTLDVRTGVLPRVHGSALFTRGETQSLVSVTLGTSRDAQNLDELLGDKT 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P + G      +   R+ G      ++  R++ +V+    L    I I  
Sbjct: 374 DNFLFHYNFPPYAVGEIGMVGSPKRREIGHG----KLAKRSILAVMPKLDLFPYTIRIVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ GA +AL D                 +   +A I+ G++       
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PISNAIAGIAMGLIKEGDDFV 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     +  G I  +Q   +    + +     L  AK+    ++ 
Sbjct: 477 VLTDILGDEDHLGDMDFKISGSKKG-ITALQMDIKVKGITNEIMKLALYQAKNARIHILN 535

Query: 233 LQKDVIS 239
           + K  ++
Sbjct: 536 IMKKSLN 542



 Score = 79.4 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 75/232 (32%), Gaps = 34/232 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLPR 68
           ++L   +  + A  + L    DT +  T   ++K       +     +   T   G +P 
Sbjct: 16  VTLETGIMARQATAAVLTSMDDTTVFVTVVGQKKLQTEQKFFPMTVNYQERTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR       I R+I R +R +         QII     +         
Sbjct: 75  --GGFFRRE---GRPSENEILIARLIDRPIRPLFPKRFFNEVQIIATVVSLNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           AI GA  AL                     G + A   G +    I++ +  E  +  +D
Sbjct: 130 AIIGASAALS-------------ISGMPFLGPIGAARIGYINNQYILNPNVNEIKSSSLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                T+   ++     AE    +++     +N          + QK VI N
Sbjct: 177 LIISGTEESVLMV---EAEANMLTEEQIINAINYG-------HEQQKIVIKN 218


>gi|115315207|ref|YP_763930.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|122324796|sp|Q0BKU1|PNP_FRATO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|115130106|gb|ABI83293.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. holarctica OSU18]
          Length = 693

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 19/245 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I++   V     GS L   G+T  L   TL       +  +  G    
Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376

Query: 62  E----YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                Y   P S G   +   A   R+ G +     +  RA ++V          + +  
Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKRREIGHA----NLAKRATQAVFPNEEAYPYVVRVVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A + G+ +++ D    + +      +  +  G   A+         + D
Sbjct: 433 EILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAV---------LSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G +  +Q   +    S++     L  A+     ++ +  +
Sbjct: 484 ILGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNE 542

Query: 237 VISNE 241
           VI   
Sbjct: 543 VIKEH 547



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 81/221 (36%), Gaps = 30/221 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           T  +++ A+GS  V  G+  +L T     ++ +    +  +  +   T   G +P   G 
Sbjct: 19  TGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            ++RE   GR       I R+I R++R           QI+    V+  DG       A+
Sbjct: 76  FLRRE---GRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVAT--VLSYDGAFSPDILAL 130

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  +L       +D              VA +  G   G  I++ +  +    D+D  
Sbjct: 131 IGASASLAISGAPYDDV-------------VAGVRVGYTNGKYILNPNKQDLRDSDLDLV 177

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
              T    I+ V+  +E  +  +      +  A   +  +I
Sbjct: 178 VSGTYDA-ILMVE--SEANSLPESVMLGGILYAHKHLKTII 215


>gi|224049203|ref|XP_002187964.1| PREDICTED: exosome component 9 [Taeniopygia guttata]
          Length = 434

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 92/262 (35%), Gaps = 32/262 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           MRL GRQ    R I ++      A+ G C+V+ G T +L   +  E VP        G +
Sbjct: 16  MRLDGRQCYDYRNIRVSFG----ADRGCCMVELGRTRVLAQVS-CELVPPKPSRPTEGVL 70

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--Q 111
                + P +           GRQ      + R++ R LR    ++  +L    G +  Q
Sbjct: 71  FFNLELSPMAAPG-----LEPGRQSELVVSLNRLLERCLRDSKCIETESLCVVAGEKVWQ 125

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHV 161
           I +D  ++  DG    AA     VAL    +           +     +  +   +    
Sbjct: 126 IRLDMHLLNHDGNITDAASIAGIVALCHFRRPDVSVQGEEVTVYTAEERDPVPLSIHHMP 185

Query: 162 AAISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
             +S        Y +VD    E+  +D      M     I  +Q S        D     
Sbjct: 186 ICVSFAFFHQGTYLLVDPTEREERVMDGLLVIAMNKHHEICTIQSSG-VVMLLPDQILRC 244

Query: 220 LNLAKDRIADLIKLQKDVISNE 241
             +   ++A++ +L +  + N+
Sbjct: 245 SKITAVKVAEITELIQKALEND 266


>gi|332799230|ref|YP_004460729.1| polyribonucleotide nucleotidyltransferase [Tepidanaerobacter sp.
           Re1]
 gi|332696965|gb|AEE91422.1| Polyribonucleotide nucleotidyltransferase [Tepidanaerobacter sp.
           Re1]
          Length = 700

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 89/234 (38%), Gaps = 26/234 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +R  GR  NQ+R IS    +     GS L   G T +LT ATL     + I +     + 
Sbjct: 310 IRPDGRTPNQIRPISCEVGILPRTHGSGLFTRGQTQVLTVATLGALGDVQILDGLGIEES 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG       V    G R      +  RAL  ++         I +  
Sbjct: 370 KRYMHHYNFPPYSTGETK----VIRGPGRREIGHGALAERALEPMIPSEEDFPYTIRLVS 425

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V+ ++G +  A++ G+ +AL D                 +K  V+ ++ G++       
Sbjct: 426 EVLSSNGSSSMASVCGSTLALMDAGV-------------PIKAPVSGVAMGLIKQGDKVT 472

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED   D+D     T +G I  +Q   +     +D   + L  A++ 
Sbjct: 473 ILTDIQGMEDFLGDMDFKVAGTKNG-ITAIQMDIKIKGIDEDILKSALQQAREG 525



 Score = 98.2 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 91/234 (38%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R++ +    V++ A GS ++++ DT LL TAT      E V        +       G +
Sbjct: 11  RKLIIETGKVAQQANGSVMIRYEDTVLLVTATASKKPREGVDFLPLTIDYEEKLYAVGKI 70

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R LR +         Q+I     +  D    
Sbjct: 71  P---GGFIKRE---GKPSEKAILSARLIDRPLRPLFPKDFRNDVQVIATVLSVDQDNTPD 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI GA  AL                    +G V A+S G++ G  +++    E     
Sbjct: 125 IVAINGASCALC-------------ISDIPFEGPVGAVSVGLIDGKYVINPTVSEAEKSR 171

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    ++ V+  A+    S++   + +    + I  +I  Q+++I+ 
Sbjct: 172 LRLVVAGTKEA-VLMVEAGADE--VSENEMLSAILYGHEEIKKIIAFQEEIINE 222


>gi|254369705|ref|ZP_04985715.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. holarctica FSC022]
 gi|157122664|gb|EDO66793.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 693

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 19/245 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I++   V     GS L   G+T  L   TL       +  +  G    
Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376

Query: 62  E----YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                Y   P S G   +   A   R+ G +     +  RA ++V          + +  
Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKRREIGHA----NLAKRATQAVFPNEEAYPYVVRVVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A + G+ +++ D    + +      +  +  G   A+         + D
Sbjct: 433 EILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAV---------LSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G +  +Q   +    S++     L  A+     ++ +  +
Sbjct: 484 ILGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNE 542

Query: 237 VISNE 241
           VI   
Sbjct: 543 VIKEH 547



 Score = 71.7 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 82/221 (37%), Gaps = 30/221 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           T  +++ A+GS  V  G+  +L T     ++ +    +  +  +   T   G +P   G 
Sbjct: 19  TGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            ++RE   GR       I R+I R++R           QI+    V+  DG       A+
Sbjct: 76  FLRRE---GRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVAT--VLSYDGAFSPDILAL 130

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  +L       +D              VA +  G   G  I++ +  +    D+D  
Sbjct: 131 IGASASLAISGAPYDDV-------------VAGVRVGYTNGKYILNPNKQDLRDSDLDLV 177

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
              TD   I+ V+  +E  +  +      +  A   +  +I
Sbjct: 178 VSGTDDA-ILMVE--SEANSLPESVMLGGILYAHKHLKTII 215


>gi|213018630|ref|ZP_03334438.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
 gi|212995581|gb|EEB56221.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
          Length = 758

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 94/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTA---TLEEKVPMWIRNTKH 56
           +R+  R+ +++R+I +   +     GS L   G T  L  TA   T +E++   I   + 
Sbjct: 310 VRIDSRKYDEIRQIEIEADILPKTHGSALFTRGSTQALVVTALGTTQDEQIVDDIEGDRR 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P + G      +     G R     ++  +A+  V+   +     I +  
Sbjct: 370 EHFMLHYNFPPFAVGE----ASAIRAPGRREIGHGKLAWKAIHPVLPDKSEFPYTIRVVS 425

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +++++DG +  A + G  +AL D                 +K  VA I+ G++       
Sbjct: 426 EIMESDGSSSMATVCGTSIALMDTGV-------------PIKAPVAGIAMGLIKDKNEHI 472

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S +     L  AK     +++
Sbjct: 473 ILSDILGDEDYLGDMDFKVAGTSEG-ITALQMDMKIPGISFEIVEKSLEQAKVGRLHILE 531

Query: 233 LQKDVISNE 241
               VIS  
Sbjct: 532 KMNAVISEH 540



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 87/235 (37%), Gaps = 33/235 (14%)

Query: 10  QMREISLTRR-VSKYAEGSCLVKFGD----THLLTTATLEEKVPMWIRNTKHGWITAEYG 64
           + R +SL    +++ A+GS +VK       +H   T   EE V     N +   I   Y 
Sbjct: 12  EGRTLSLETGKIARQADGSVVVKLWRYFYLSHC-CTKKKEESVDFLPLNVQF--IAKSYA 68

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD-- 122
           M     G   KRE   G+   R   I R+I R++R +          I + C+++  D  
Sbjct: 69  MGKIP-GGFFKRE---GKPSDRETLISRVIDRSIRPLFPEGFHDE--ISVVCNLLTYDTV 122

Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDYGE 181
                 A+ G   AL                       +A +  G       I++    E
Sbjct: 123 NSPEVPALIGTVAALA-------------ISGVPFHFTIAGVMVGCDENNNYILNPSVQE 169

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
               ++D  F+  D   I+ V+  +E    S+++    +    + +  +IKL K+
Sbjct: 170 MKASNLDL-FLSGDENSILMVE--SEVKELSEENVLNAIKFGHEHLQPVIKLIKE 221


>gi|187932015|ref|YP_001892000.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|257096689|sp|B2SDK7|PNP_FRATM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187712924|gb|ACD31221.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 693

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 19/245 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I++   V     GS L   G+T  L   TL       +  +  G    
Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376

Query: 62  E----YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                Y   P S G   +   A   R+ G +     +  RA ++V          + +  
Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKRREIGHA----NLAKRATQAVFPNEEAYPYVVRVVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A + G+ +++ D    + +      +  +  G   A+         + D
Sbjct: 433 EILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAV---------LSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G +  +Q   +    S++     L  A+     ++ +  +
Sbjct: 484 ILGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNE 542

Query: 237 VISNE 241
           VI   
Sbjct: 543 VIKEH 547



 Score = 88.6 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 82/221 (37%), Gaps = 30/221 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           T  +++ A+GS  V  G+  +L T     ++ +    +  +  +   T   G +P   G 
Sbjct: 19  TGGMARQADGSVTVSCGNNIVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            ++RE   GR       I R+I R++R           QI+    V+  DG       A+
Sbjct: 76  FLRRE---GRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVAT--VLSYDGAFSPDILAL 130

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  +L       +D              VA +  G   G  I++ +  +    D+D  
Sbjct: 131 IGASASLAISGAPYDDV-------------VAGVRVGYTNGKYILNPNKQDLRDSDLDLV 177

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
              TD   I+ V+  +E  +  +      +  A   +  +I
Sbjct: 178 VSGTDDA-ILMVE--SEANSLPESVMLGGILYAHKHLKTII 215


>gi|307278201|ref|ZP_07559283.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0860]
 gi|306505190|gb|EFM74378.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX0860]
          Length = 694

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 89/240 (37%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  L+  T     E ++   +     
Sbjct: 308 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 367

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL  ++         I +  
Sbjct: 368 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQIIPSEEDFPYTIRLVA 423

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 424 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 470

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      L+ AK    ++++
Sbjct: 471 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILE 529



 Score = 95.2 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 90/231 (38%), Gaps = 31/231 (13%)

Query: 12  REISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLPR 68
           R IS      + A G+ LV++GDT +L    A+ E K V  +     +       G +P 
Sbjct: 11  RPIS------QKANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP- 63

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR   R+    R+I R +R +         QI      ++ D     A
Sbjct: 64  --GGFIKRE---GRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVEQDCTPEMA 118

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +  G + G  +++    +    D++
Sbjct: 119 AMFGSSLALA-------------ISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDIE 165

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                T    I  V+  A+    S++     L    D I +L+  Q+++++
Sbjct: 166 LTVAGTKEA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 213


>gi|262374052|ref|ZP_06067329.1| polyribonucleotide nucleotidyltransferase [Acinetobacter junii
           SH205]
 gi|262311063|gb|EEY92150.1| polyribonucleotide nucleotidyltransferase [Acinetobacter junii
           SH205]
          Length = 697

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 93/246 (37%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L T TL       +      TK  
Sbjct: 317 RIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +      R+ G      R+  R +++V+  +      I I  D
Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA ++L D                 LK  VA I+ G++  G     
Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G I  +Q   +    +++     LN A      ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNE 538

Query: 234 QKDVIS 239
              VIS
Sbjct: 539 MNKVIS 544



 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 78/237 (32%), Gaps = 43/237 (18%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           ++ L    V++ A  + LV  G   +L         P          +T  Y     + G
Sbjct: 17  QVVLETGRVARQAN-TVLVTMGGVTVLVAVV---AQPKAKAGQDFFPLTVNYQEKQYAAG 72

Query: 72  NRVKREAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDC----DVIQADG 123
              +     G++ GR+ E    I R+I R +R +         Q+          + AD 
Sbjct: 73  ---RIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSSDKTMDAD- 128

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
               AA+ G   AL                    +G +     G++ G  +++ ++ + +
Sbjct: 129 ---IAAMLGTSAALSIAGT-------------PFRGPIGGARVGLINGEYVLNPNFEQLA 172

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233
             D+D     T+S  ++     +E    S+D            + +A   I +    
Sbjct: 173 QSDLDLVVAGTESAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAA 226


>gi|170067614|ref|XP_001868552.1| exosome component 6 [Culex quinquefasciatus]
 gi|167863716|gb|EDS27099.1| exosome component 6 [Culex quinquefasciatus]
          Length = 246

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 18/170 (10%)

Query: 16  LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           +   V   A+GS  ++ G+T ++ +     ++P      + G +  +    P +  +R  
Sbjct: 1   MKLGVVSTAKGSAYLELGNTKVIVSVFDPREIPKQNTFRELGELYCDLKFSPFACVHRKN 60

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
            +  +     RS  +   + +AL+ VV      + QI I  +V++ DG    A IT A +
Sbjct: 61  PQTDA---EERS--LAAAMTKALQPVVCRHLFPNFQIDIFANVLEDDGSVLGAVITAAGL 115

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           AL D    M D              V A +  +      +D    E+   
Sbjct: 116 ALSDATISMFDI-------------VTATTVAVYGDRIYLDPTLAEERLC 152


>gi|126740759|ref|ZP_01756444.1| polynucleotide phosphorylase/polyadenylase [Roseobacter sp.
           SK209-2-6]
 gi|126718055|gb|EBA14772.1| polynucleotide phosphorylase/polyadenylase [Roseobacter sp.
           SK209-2-6]
          Length = 705

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 94/243 (38%), Gaps = 17/243 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +++R+I     +     GS L   G+T  L   TL         +  HG   +
Sbjct: 310 RIDGRKTDEIRDIVSETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 369

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+  +      I +  +
Sbjct: 370 NFLLHYNFPPYSVGEVGR----VGGPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVSE 425

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +++ D    ++       +  +L+      S  +     + D+
Sbjct: 426 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILED---DGSYAI-----LSDI 477

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   + A  + +     L  AKD    ++      
Sbjct: 478 LGDEDHLGDMDFKVAGTEKG-ITSLQMDIKVAGITPEIMEKALAQAKDGRLHILGEMAKA 536

Query: 238 ISN 240
           ++ 
Sbjct: 537 LTE 539



 Score = 71.7 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 78/234 (33%), Gaps = 39/234 (16%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70
           ++L    V++ A+GS +   G+T ++   T   +            +T  Y     +   
Sbjct: 8   LTLETGKVARQADGSVIATLGETSVMANVTFARQQKP---GQDFFPLTVHYQEKYYAAGK 64

Query: 71  --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++ C V+  D      
Sbjct: 65  VPGGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 119

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                     G +A    G   G  +++     D   D
Sbjct: 120 MVAMIAASAALTLSGA-------------PFMGPIAGARVGFEDGEYVLNPTV--DDMQD 164

Query: 187 VDAN-------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +  N        V      ++ V+  +E    S+      +  A ++I  ++ L
Sbjct: 165 LRLNPEQRLDLVVAGTKDAVMMVE--SEAYELSEAEMLGAVKFAHEQIQPVVDL 216


>gi|298377863|ref|ZP_06987813.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_19]
 gi|301312258|ref|ZP_07218175.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 20_3]
 gi|298265309|gb|EFI06972.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_19]
 gi|300829680|gb|EFK60333.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 20_3]
          Length = 746

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 91/245 (37%), Gaps = 24/245 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           RL GR+  ++R I +         GS +   G+T  L+T TL  K    +     N  + 
Sbjct: 319 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKMIDDVLNHGYE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG       V  R+ G       +  RAL+ ++  +      + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKATRGVGRREIGHG----NLAHRALKRMIPDN--YPYVVRVISD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176
           +++++G +  A +    +AL D    M+   +   +          IS      Y I+ D
Sbjct: 433 ILESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMG--------LISENKGTNYAILSD 484

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIK 232
           +   ED   D+D     T  G I   Q   +    S +     L  AK+     +  +++
Sbjct: 485 ILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILENALAQAKEGRMHILGKILE 543

Query: 233 LQKDV 237
            Q + 
Sbjct: 544 AQPEA 548



 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 80/230 (34%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R I++      K A+G+  V+  +T LL T          V       ++    + +G  
Sbjct: 15  RTITIETGKLAKQADGAVTVRMNNTVLLATVCAAKDANPGVDFMPLQVEYKEKYSAFGRF 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+         R++ RALR +   +     ++ ++  +  ADG   
Sbjct: 75  P---GGFTKRE---GKASDYEILTSRLVDRALRPLFPDN--YHAEVYVNIILFSADG--- 123

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                     L D L  +   +          G ++ +      G  IV+    E    D
Sbjct: 124 --------EDLPDALAGLAASAALAVSDIPFNGPISEVRVARTDGKYIVNPTSAELEKAD 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T   +I+ V+G  E     +      + +A + I    K Q +
Sbjct: 176 IDIMVAATID-NIMMVEG--EMNEVQESEMLEAIKVAHEAIKVQCKAQLE 222


>gi|163744086|ref|ZP_02151452.1| polynucleotide phosphorylase/polyadenylase [Phaeobacter
           gallaeciensis 2.10]
 gi|161382633|gb|EDQ07036.1| polynucleotide phosphorylase/polyadenylase [Phaeobacter
           gallaeciensis 2.10]
          Length = 704

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 90/243 (37%), Gaps = 17/243 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I     +     GS L   G+T  L   TL         +  HG   +
Sbjct: 310 RIDGRSTTDVRAIESETGMLPRTHGSALFTRGETQALAVTTLGTGDDEQFIDALHGNFKS 369

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+         I +  +
Sbjct: 370 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSE 425

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +++ D    ++       +  +L+      S  +     + D+
Sbjct: 426 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILED---DGSYAI-----LSDI 477

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     TD G I  +Q   + A  + +     L+ AKD    ++      
Sbjct: 478 LGDEDHLGDMDFKVAGTDKG-ITSLQMDIKVAGITPEIMEKALDQAKDGRLHILGEMAKA 536

Query: 238 ISN 240
           +S 
Sbjct: 537 LSE 539



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 81/231 (35%), Gaps = 33/231 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70
           ++L    V++ A+G+ +   G+T ++   T   +            +T  Y     +   
Sbjct: 8   LTLETGKVARQADGTVIATLGETSVMANVTFARQQKP---GQDFFPLTVHYQEKYYAAGK 64

Query: 71  --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++ C V+  D      
Sbjct: 65  VPGGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 119

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG--EDST 184
             A+  A  AL                     G +AA   G   G  +++      +D  
Sbjct: 120 MVAMIAASAALTLSGA-------------PFMGPIAAARVGFEGGEYVLNPTVDDMQDLR 166

Query: 185 IDVD--ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           ++ D   + V+  +   V +  S E    ++      +  A ++I  +I L
Sbjct: 167 LNPDQRLDLVVAGTKDAVMMVES-EAYELTEAEMLGAVKFAHEQIQPVIDL 216


>gi|167630367|ref|YP_001680866.1| polyribonucleotide nucleotidyltransferase [Heliobacterium
           modesticaldum Ice1]
 gi|257096694|sp|B0THS2|PNP_HELMI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|167593107|gb|ABZ84855.1| polyribonucleotide nucleotidyltransferase [Heliobacterium
           modesticaldum Ice1]
          Length = 709

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 86/233 (36%), Gaps = 26/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           R  GR+ +++R IS+   +     GS L   G T +L   TL     + I +     +  
Sbjct: 311 RPDGRKMDEIRPISVEVGILPRTHGSGLFTRGQTQVLNVCTLGTIADLQILDGLGVEESK 370

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G          R+ G       +  RAL  V+         I +  +
Sbjct: 371 RYMHHYNFPPYSVGETRPMRGPGRREIGHG----ALAERALLPVIPSEDEFPYTIRLVSE 426

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
            ++++G T  A++ G+ ++L +                 +K  VA I+ G++  G     
Sbjct: 427 AVESNGSTSMASVCGSTLSLMNAGV-------------PIKKPVAGIAMGLIKEGEHFSI 473

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A+  
Sbjct: 474 LSDIQGMEDHLGDMDFKVAGTADG-VTALQMDIKIKGVNREILTQALQQARKG 525



 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 84/233 (36%), Gaps = 27/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+K A GS L ++GDT +L TAT        +  +     +       G +
Sbjct: 11  RTLTIETGRVAKQAGGSVLARYGDTVVLVTATGSKEPRPGIDFFPLTVDYEERLYAVGKI 70

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   ++    R+I R +R +         Q++     +  D    
Sbjct: 71  P---GGFIKRE---GRPTEKAILSARLIDRPIRPLFPKGFRNDVQVVATVMSVDQDCPPD 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              + GA  AL                    +G +  +  G + G  +++    +    D
Sbjct: 125 IVGMIGASCALS-------------LSDIPFEGPIGGVLVGRVDGKLLINPTMEQAEKSD 171

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +      T    ++ V+  A      ++     +      I  ++  Q+++++
Sbjct: 172 MHLVVAGTKDA-VMMVEAGANEVP--EEDMIEAIMFGHQEIQRIVAFQEEMVA 221


>gi|118497208|ref|YP_898258.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. novicida U112]
 gi|194323507|ref|ZP_03057284.1| 3' exoribonuclease family, domain 2 [Francisella tularensis subsp.
           novicida FTE]
 gi|254372573|ref|ZP_04988062.1| polyribonucleotide nucleotidyltransferase [Francisella tularensis
           subsp. novicida GA99-3549]
 gi|254374032|ref|ZP_04989514.1| polyribonucleotide nucleotidyltransferase [Francisella novicida
           GA99-3548]
 gi|187610266|sp|A0Q5I9|PNP_FRATN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|118423114|gb|ABK89504.1| polyribonucleotide nucleotidyltransferase [Francisella novicida
           U112]
 gi|151570300|gb|EDN35954.1| polyribonucleotide nucleotidyltransferase [Francisella novicida
           GA99-3549]
 gi|151571752|gb|EDN37406.1| polyribonucleotide nucleotidyltransferase [Francisella novicida
           GA99-3548]
 gi|194322362|gb|EDX19843.1| 3' exoribonuclease family, domain 2 [Francisella tularensis subsp.
           novicida FTE]
          Length = 693

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 19/245 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I++   V     GS L   G+T  L   TL       +  +  G    
Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376

Query: 62  E----YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                Y   P S G   +   A   R+ G +     +  RA ++V          + +  
Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKRREIGHA----NLAKRATQAVFPNEEAYPYVVRVVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A + G+ +++ D    + +      +  +  G   A+         + D
Sbjct: 433 EILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAV---------LSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G +  +Q   +    S++     L  A+     ++ +  +
Sbjct: 484 ILGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNE 542

Query: 237 VISNE 241
           VI   
Sbjct: 543 VIKEH 547



 Score = 71.7 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 82/221 (37%), Gaps = 30/221 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           T  +++ A+GS  V  G+  +L T     ++ +    +  +  +   T   G +P   G 
Sbjct: 19  TGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            ++RE   GR       I R+I R++R           QI+    V+  DG       A+
Sbjct: 76  FLRRE---GRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVAT--VLSYDGAFSPDILAL 130

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  +L       +D              VA +  G   G  I++ +  +    D+D  
Sbjct: 131 IGASASLAISGAPYDDV-------------VAGVRVGYTNGKYILNPNKQDLRDSDLDLV 177

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
              TD   I+ V+  +E  +  +      +  A   +  +I
Sbjct: 178 VSGTDDA-ILMVE--SEANSLPESVMLGGILYAHKHLKTII 215


>gi|254482485|ref|ZP_05095724.1| 3' exoribonuclease family, domain 2, protein [marine gamma
           proteobacterium HTCC2148]
 gi|214037176|gb|EEB77844.1| 3' exoribonuclease family, domain 2, protein [marine gamma
           proteobacterium HTCC2148]
          Length = 703

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 87/247 (35%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I+    V   A GS L   G+T  +   TL       I +  HG    
Sbjct: 314 RIDGRDTRTVRAIACEVDVLAKAHGSALFTRGETQAIGAVTLGSTRDAQIIDALHGERRD 373

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +    S R+ G      R+  R L +V+         I +  +
Sbjct: 374 PFMLHYNFPPYSVGEAGRVGFTSRREVGHG----RLARRGLAAVLPNQEEFPYTIRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++    + L                   LK  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCAGSLGLMAAGV-------------PLKAPVAGIAMGLVKDGNQFAV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +       L+ A+     ++  
Sbjct: 477 LTDILGDEDHLGDMDFKVAGTAEG-ITALQMDIKIEGITAQIMETALDQAQHARLHILGQ 535

Query: 234 QKDVISN 240
             +V++ 
Sbjct: 536 MNEVLAE 542



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 79/235 (33%), Gaps = 32/235 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A GS LV   +T +L T   E         +     +   T   G +P 
Sbjct: 15  VTLETGRIARQATGSVLVTVENTSVLCTVVAEKTQRPGRDFFPLAVHYVEKTYSVGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126
             G   KREA   R   +     R+I R +R +     +   Q++  C V+ AD      
Sbjct: 74  --GGFFKREA---RPSEKETLTSRLIDRPIRPLFPNGFMNEVQVV--CTVMSADKHIDPD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185
             A+ G   AL                     G +     G       I++  Y +    
Sbjct: 127 IPAMIGTSAALAISGA-------------PFNGPIGGARVGFSDEKGYILNPTYEQLEES 173

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            +D     T    ++     +E    S+D     +  A   +  +++   ++++ 
Sbjct: 174 KLDMVVAGTADAVLMV---ESEAKELSEDQMLGAVLFAHQEMQTVVQAINELVAE 225


>gi|293573060|ref|ZP_06684001.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E980]
 gi|291606879|gb|EFF36260.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E980]
          Length = 736

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 88/240 (36%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  L+  T     E ++   +     
Sbjct: 346 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEVS 405

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL  V+         I +  
Sbjct: 406 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQVIPSEEEFPYTIRLVA 461

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 462 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 508

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      L  AK    ++++
Sbjct: 509 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALTQAKQARMEILE 567



 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 89/231 (38%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L+ A   ++      +     +       G +P
Sbjct: 42  RPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAAGKIP 101

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+      ++ D     
Sbjct: 102 ---GGFIKRE---GRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVETDCSPAM 155

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  +++    +    D+
Sbjct: 156 AAMLGSSLALS-------------ISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDI 202

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           +     T    I  V+  A+    S++     L    D I +L+  Q++++
Sbjct: 203 ELTVAGTKQA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIV 250


>gi|293556873|ref|ZP_06675434.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1039]
 gi|291600957|gb|EFF31248.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1039]
          Length = 736

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 88/240 (36%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  L+  T     E ++   +     
Sbjct: 346 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEVS 405

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL  V+         I +  
Sbjct: 406 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQVIPSEEEFPYTIRLVA 461

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 462 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 508

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      L  AK    ++++
Sbjct: 509 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALTQAKQARMEILE 567



 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 89/231 (38%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L+ A   ++      +     +       G +P
Sbjct: 42  RPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAAGKIP 101

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+      ++ D     
Sbjct: 102 ---GGFIKRE---GRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVETDCSPAV 155

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  +++    +    D+
Sbjct: 156 AAMLGSSLALS-------------ISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDI 202

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           +     T    I  V+  A+    S++     L    D I +L+  Q++++
Sbjct: 203 ELTVAGTKQA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIV 250


>gi|295687493|ref|YP_003591186.1| polyribonucleotide nucleotidyltransferase [Caulobacter segnis ATCC
           21756]
 gi|295429396|gb|ADG08568.1| polyribonucleotide nucleotidyltransferase [Caulobacter segnis ATCC
           21756]
          Length = 712

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 20/243 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           +R+ GR    +R I     +     GS L   G+T  +  ATL         +   G   
Sbjct: 316 LRIDGRDVRTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYK 375

Query: 58  -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R     ++  RALR ++         I +  
Sbjct: 376 ESFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRALRPMLPSKEDFPYTIRLVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175
           ++ +++G +  A + G+ +A+ D    +    +   +  +L+            G+ ++ 
Sbjct: 432 EITESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAMGLILE----------KDGFAVLS 481

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T  G +  +Q   + A  +       L  AK+  A ++    
Sbjct: 482 DILGDEDHLGDMDFKVAGTSEG-LTSLQMDIKIAGITPQIMEQALAQAKEGRAHILGEMN 540

Query: 236 DVI 238
             +
Sbjct: 541 KAM 543



 Score = 84.8 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 77/233 (33%), Gaps = 40/233 (17%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG--- 71
           L    +++ A+G+ L   G+T +L TA                 +T  Y     + G   
Sbjct: 18  LETGRIARQADGAVLATMGETVVLATAVF---AKSQKPGQDFFPLTVNYQEKTFAAGKIP 74

Query: 72  -NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTRTA 128
               KRE   GR   +   + R+I R +R +         Q+++   V+Q D        
Sbjct: 75  GGFFKRE---GRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVT--VLQHDLENDPDIL 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            +  A  AL                     G + A   G + G  +++    E     +D
Sbjct: 130 GMVAASAALTLSGA-------------PFMGPIGAARVGWVDGAYVLNPTLDEMKESKMD 176

Query: 189 ANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAM----LNLAKDRIAD 229
                T    ++   E+Q  +E        F+     A+    ++LA+    +
Sbjct: 177 LVVAGTADAVMMVESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAKE 229


>gi|262384733|ref|ZP_06077866.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_33B]
 gi|262293714|gb|EEY81649.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_33B]
          Length = 746

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 91/245 (37%), Gaps = 24/245 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           RL GR+  ++R I +         GS +   G+T  L+T TL  K    +     N  + 
Sbjct: 319 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKMIDDVLNHGYE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG       V  R+ G       +  RAL+ ++  +      + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKATRGVGRREIGHG----NLAHRALKRMIPDN--YPYVVRVISD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176
           +++++G +  A +    +AL D    M+   +   +          IS      Y I+ D
Sbjct: 433 ILESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMG--------LISENKGTNYAILSD 484

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIK 232
           +   ED   D+D     T  G I   Q   +    S +     L  AK+     +  +++
Sbjct: 485 ILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILENALAQAKEGRMHILGKILE 543

Query: 233 LQKDV 237
            Q + 
Sbjct: 544 AQPEA 548



 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 80/230 (34%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R I++      K A+G+  V+  +T LL T          V       ++    + +G  
Sbjct: 15  RTITIETGKLAKQADGAVTVRMNNTVLLATVCAAKDANPGVDFMPLQVEYKEKYSAFGRF 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+         R++ RALR +   +     ++ ++  +  ADG   
Sbjct: 75  P---GGFTKRE---GKASDYEILTSRLVDRALRPLFPDN--YHAEVYVNIILFSADG--- 123

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                     L D L  +   +          G ++ +      G  IV+    E    D
Sbjct: 124 --------EDLPDALAGLAASAALAVSDIPFNGPISEVRVARTDGKYIVNPTSAELEKAD 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T   +I+ V+G  E     +      + +A + I    K Q +
Sbjct: 176 IDIMVAATID-NIMMVEG--EMNEVQESEMLEAIKVAHEAIKVQCKAQLE 222


>gi|227550843|ref|ZP_03980892.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecium
           TX1330]
 gi|293379257|ref|ZP_06625403.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           PC4.1]
 gi|227179941|gb|EEI60913.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecium
           TX1330]
 gi|292642053|gb|EFF60217.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           PC4.1]
          Length = 736

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 88/240 (36%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  L+  T     E ++   +     
Sbjct: 346 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEVS 405

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL  V+         I +  
Sbjct: 406 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQVIPSEEEFPYTIRLVA 461

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 462 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 508

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      L  AK    ++++
Sbjct: 509 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALTQAKQARMEILE 567



 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 89/231 (38%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L+ A   ++      +     +       G +P
Sbjct: 42  RPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAAGKIP 101

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+      ++ D     
Sbjct: 102 ---GGFIKRE---GRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVETDCSPAM 155

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  +++    +    D+
Sbjct: 156 AAMLGSSLALS-------------ISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDI 202

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           +     T    I  V+  A+    S++     L    D I +L+  Q++++
Sbjct: 203 ELTVAGTKQA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIV 250


>gi|208779001|ref|ZP_03246347.1| 3' exoribonuclease family, domain 2 [Francisella novicida FTG]
 gi|208744801|gb|EDZ91099.1| 3' exoribonuclease family, domain 2 [Francisella novicida FTG]
          Length = 693

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 19/245 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I++   V     GS L   G+T  L   TL       +  +  G    
Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376

Query: 62  E----YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                Y   P S G   +   A   R+ G +     +  RA ++V          + +  
Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKRREIGHA----NLAKRATQAVFPNEEAYPYVVRVVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A + G+ +++ D    + +      +  +  G   A+         + D
Sbjct: 433 EILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGTKYAV---------LSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G +  +Q   +    S++     L  A+     ++ +  +
Sbjct: 484 ILGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNE 542

Query: 237 VISNE 241
           VI   
Sbjct: 543 VIKEH 547



 Score = 71.7 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 82/221 (37%), Gaps = 30/221 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           T  +++ A+GS  V  G+  +L T     ++ +    +  +  +   T   G +P   G 
Sbjct: 19  TGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            ++RE   GR       I R+I R++R           QI+    V+  DG       A+
Sbjct: 76  FLRRE---GRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVAT--VLSYDGAFSPDILAL 130

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  +L       +D              VA +  G   G  I++ +  +    D+D  
Sbjct: 131 IGASASLAISGAPYDDV-------------VAGVRVGYTNGKYILNPNKQDLRDSDLDLV 177

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
              TD   I+ V+  +E  +  +      +  A   +  +I
Sbjct: 178 VSGTDDA-ILMVE--SEANSLPESVMLGGILYAHKHLKTII 215


>gi|150009352|ref|YP_001304095.1| polynucleotide phosphorylase/polyadenylase [Parabacteroides
           distasonis ATCC 8503]
 gi|255016204|ref|ZP_05288330.1| polynucleotide phosphorylase/polyadenylase [Bacteroides sp. 2_1_7]
 gi|256842357|ref|ZP_05547860.1| polyribonucleotide nucleotidyltransferase [Parabacteroides sp. D13]
 gi|187610323|sp|A6LFK9|PNP_PARD8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|149937776|gb|ABR44473.1| polyribonucleotide nucleotidyltransferase [Parabacteroides
           distasonis ATCC 8503]
 gi|256735964|gb|EEU49295.1| polyribonucleotide nucleotidyltransferase [Parabacteroides sp. D13]
          Length = 746

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 91/245 (37%), Gaps = 24/245 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           RL GR+  ++R I +         GS +   G+T  L+T TL  K    +     N  + 
Sbjct: 319 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKMIDDVLNHGYE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG       V  R+ G       +  RAL+ ++  +      + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKATRGVGRREIGHG----NLAHRALKRMIPDN--YPYVVRVISD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176
           +++++G +  A +    +AL D    M+   +   +          IS      Y I+ D
Sbjct: 433 ILESNGSSSMATVCAGTLALRDAGVPMKKPVSGIAMG--------LISENKGTNYAILSD 484

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIK 232
           +   ED   D+D     T  G I   Q   +    S +     L  AK+     +  +++
Sbjct: 485 ILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILENALAQAKEGRMHILGKILE 543

Query: 233 LQKDV 237
            Q + 
Sbjct: 544 AQPEA 548



 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 80/230 (34%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R I++      K A+G+  V+  +T LL T          V       ++    + +G  
Sbjct: 15  RTITIETGKLAKQADGAVTVRMNNTVLLATVCAAKDANPGVDFMPLQVEYKEKYSAFGRF 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+         R++ RALR +   +     ++ ++  +  ADG   
Sbjct: 75  P---GGFTKRE---GKASDYEILTSRLVDRALRPLFPDN--YHAEVYVNIILFSADG--- 123

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                     L D L  +   +          G ++ +      G  IV+    E    D
Sbjct: 124 --------EDLPDALAGLAASAALAVSDIPFNGPISEVRVARTDGKYIVNPTSAELEKAD 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T   +I+ V+G  E     +      + +A + I    K Q +
Sbjct: 176 IDIMVAATID-NIMMVEG--EMNEVQESEMLEAIKVAHEAIKVQCKAQLE 222


>gi|86139387|ref|ZP_01057956.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. MED193]
 gi|85823890|gb|EAQ44096.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. MED193]
          Length = 702

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 93/243 (38%), Gaps = 17/243 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +++R+I     +     GS L   G+T  L   TL         +  HG   +
Sbjct: 310 RIDGRATDEIRDIVSETGMLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 369

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+  +      I +  +
Sbjct: 370 NFLLHYNFPPYSVGEVGR----VGGPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVSE 425

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +++ D    ++       +  +L+      S  +     + D+
Sbjct: 426 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILED---DGSYAI-----LSDI 477

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   + A  + +     L  AK     ++      
Sbjct: 478 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITPEIMEKALEQAKAGRIHILGEMNKA 536

Query: 238 ISN 240
           +S 
Sbjct: 537 LSG 539



 Score = 75.1 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 78/234 (33%), Gaps = 39/234 (16%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70
           ++L    V++ A+GS +   G+T ++   T   K            +T  Y     +   
Sbjct: 8   LTLETGKVARQADGSVIATLGETSVMANVTFARKQKP---GQDFFPLTVHYQEKYYAAGK 64

Query: 71  --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++ C V+  D      
Sbjct: 65  VPGGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 119

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                     G +AA   G   G  +++     D   D
Sbjct: 120 MVAMIAASAALTLSGA-------------PFMGPIAAARVGFEGGEYVLNPTV--DDMQD 164

Query: 187 VDAN-------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +  N        V      ++ V+  +E    S+      +  A D I  +I L
Sbjct: 165 LRLNPEQRLDLVVAGTKDAVMMVE--SEAYELSEAEMLGAVKFAHDAIQPVIDL 216


>gi|69248510|ref|ZP_00604759.1| Polyribonucleotide nucleotidyltransferase [Enterococcus faecium DO]
 gi|258615105|ref|ZP_05712875.1| polynucleotide phosphorylase/polyadenylase [Enterococcus faecium
           DO]
 gi|293567824|ref|ZP_06679165.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1071]
 gi|294614599|ref|ZP_06694503.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1636]
 gi|294618481|ref|ZP_06698045.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1679]
 gi|294621222|ref|ZP_06700407.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           U0317]
 gi|314938851|ref|ZP_07846122.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133a04]
 gi|314943656|ref|ZP_07850410.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133C]
 gi|314949091|ref|ZP_07852451.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0082]
 gi|314952184|ref|ZP_07855202.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133A]
 gi|314994554|ref|ZP_07859820.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133B]
 gi|314996553|ref|ZP_07861590.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133a01]
 gi|68194404|gb|EAN08910.1| Polyribonucleotide nucleotidyltransferase [Enterococcus faecium DO]
 gi|291589409|gb|EFF21216.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1071]
 gi|291592501|gb|EFF24106.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1636]
 gi|291595238|gb|EFF26567.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1679]
 gi|291599218|gb|EFF30250.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           U0317]
 gi|313589294|gb|EFR68139.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133a01]
 gi|313591076|gb|EFR69921.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133B]
 gi|313595716|gb|EFR74561.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133A]
 gi|313597693|gb|EFR76538.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133C]
 gi|313641862|gb|EFS06442.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0133a04]
 gi|313644507|gb|EFS09087.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           TX0082]
          Length = 736

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 88/240 (36%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  L+  T     E ++   +     
Sbjct: 346 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEVS 405

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL  V+         I +  
Sbjct: 406 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQVIPSEEEFPYTIRLVA 461

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 462 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 508

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      L  AK    ++++
Sbjct: 509 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALTQAKQARMEILE 567



 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 89/231 (38%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L+ A   ++      +     +       G +P
Sbjct: 42  RPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAAGKIP 101

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+      ++ D     
Sbjct: 102 ---GGFIKRE---GRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVETDCSPAM 155

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  +++    +    D+
Sbjct: 156 AAMLGSSLALS-------------ISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDI 202

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           +     T    I  V+  A+    S++     L    D I +L+  Q++++
Sbjct: 203 ELTVAGTKQA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIV 250


>gi|113954008|ref|YP_731290.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           CC9311]
 gi|123327683|sp|Q0I8D2|PNP_SYNS3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|113881359|gb|ABI46317.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           CC9311]
          Length = 721

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 94/238 (39%), Gaps = 36/238 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66
           REI LT    +  A GS +++ GDT +L TAT                +  +Y       
Sbjct: 13  REIRLTTGRYAPQAGGSVMIECGDTSVLVTAT----RSKGRDGIDFLPLICDYEERLYAA 68

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----AD 122
            R  G+ ++RE+   R   R+  I R+I R +R +         QI+  C  +     AD
Sbjct: 69  GRIPGSFMRRES---RPPERATLICRLIDRPMRPLFPSWLRDDLQIVATCMSLDERVPAD 125

Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
                 A+TGA +A                      G +AA+  G+L    +++  Y E 
Sbjct: 126 ----VLAVTGASMATLLA-------------KIPFYGPMAAVRVGLLGDDFVLNPSYREI 168

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
              D+D     T  G +V V+  A +    +      ++   + +++LIK Q+ ++  
Sbjct: 169 ERGDLDLVVAGTPQG-VVMVEAGANQ--LPEGDVIEAIDFGYEAVSELIKAQQSILKE 223



 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 91/249 (36%), Gaps = 27/249 (10%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           R+ GR  +Q+R IS    V  K   GS L + G T +L+TATL           +  +  
Sbjct: 323 RVDGRNLDQVRPISAAAGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPSNE 382

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      +   R+ G       +  RA+  V+         + +  
Sbjct: 383 KTYLHHYNFPAYSVGETRPMRSPGRREIGHG----ALAERAIVPVLPAKDTFPYVVRVVS 438

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V+ ++G T   ++ G+ +AL D                 LK  V+  + G++       
Sbjct: 439 EVLSSNGSTSMGSVCGSTLALMDAGV-------------PLKSPVSGAAMGLIKEGDEVK 485

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED  +D+D     TD G I  +Q   +            +N A+     +++
Sbjct: 486 ILTDIQGIEDFLVDMDFKVAGTDKG-ITALQMDMKITGLPVSIVADAVNQARPARLHILE 544

Query: 233 LQKDVISNE 241
              + I + 
Sbjct: 545 KMMEAIESP 553


>gi|327482021|gb|AEA85331.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri
           DSM 4166]
          Length = 701

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 95/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLAIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R + +++  +      I +  +
Sbjct: 376 AFMLHYNFPPYSVGE-CGRMGATGR---REIGHGRLARRGVAAMLPSADEFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA +AL D    M             K  VA I+ G++  G     
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A +   +++  
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTAKG-VTALQMDIKIQGITEEIMEIALGQALEARLNILGQ 537

Query: 234 QKDVISN 240
              VI+ 
Sbjct: 538 MNQVIAQ 544



 Score = 58.6 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
           ++L    +++ A G+ LV   D   +L T    +        +  +  +   T   G +P
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKSADPSKGFFPLSVHYQEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KREA   R   +     R+I R +R +         Q+I              
Sbjct: 75  ---GGFFKREA---RPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVSTSKKTDPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
           AA+ G   AL                     G + A           +++ +Y +     
Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPIGAARVAFHPETGYLLNPNYEQLKASS 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T    ++     +E    ++D     +  A D    +IK  ++
Sbjct: 176 LDMVVAGTKDAVLMV---ESEAKELTEDQMLGAVLFAHDEFQAVIKAVEE 222


>gi|144899450|emb|CAM76314.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Magnetospirillum gryphiswaldense MSR-1]
          Length = 721

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 83/230 (36%), Gaps = 18/230 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR    +R I     V   A GS L   G+T  L  ATL       I +   G   
Sbjct: 315 IRIDGRDTKTVRAIESQVGVLPRAHGSALFTRGETQALVVATLGTGQDEQIIDALDGEYR 374

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R     ++  RA+R  +         I +  
Sbjct: 375 ENFMLHYNFPPYSVGEAGR----MGSPGRREIGHGKLAWRAVRPCLPTKESFPYTIRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++ +++G +  A + G+ +A+ D    M        +  + +    A+         + D
Sbjct: 431 EITESNGSSSMATVCGSSLAMMDAGVPMPRPVAGIAMGLIKEDSGFAV---------LSD 481

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           +   ED   D+D     T  G +  +Q   +  + +++     L  AKD 
Sbjct: 482 ILGDEDHLGDMDFKVAGTAEG-VTALQMDIKITSITEEIMKIALGQAKDG 530



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 77/216 (35%), Gaps = 31/216 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R++ L    +++ A+G+ L  +GDT +L T       +  +  +     +       G +
Sbjct: 16  RKLVLEAGKIARQADGAVLATYGDTTVLCTVVGAKAPKPGIDFFPLTVNYQEKAFAAGKI 75

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR   +   + R+I R +R +         Q++  C V+  D    
Sbjct: 76  P---GGFFKRE---GRPSEKETLVSRLIDRPIRPLFVDGYRNETQVV--CTVLSHDLEND 127

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+ GA  AL                     G +AA   G + G  +++    +   
Sbjct: 128 PDIVAMVGASAAL-------------TISGLPFMGPIAAARVGYINGEYVLNPTTAQVKE 174

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
             +D     T  G ++     +E    S+D     +
Sbjct: 175 SALDLVVAGTVEGVLMV---ESEAKELSEDIMLGAV 207


>gi|58584280|ref|YP_197853.1| polynucleotide phosphorylase/polyadenylase [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|75498164|sp|Q5GTR3|PNP_WOLTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|58418596|gb|AAW70611.1| Polyribonucleotide nucleotidyltransferase, pnp [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 755

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTA---TLEEKVPMWIRNTKHG 57
           R+ GR+ +++R+I +   +     GS L   G T  L  TA   T +E++   I   +  
Sbjct: 311 RIDGRKYDEIRQIEVEVDILSRTHGSALFTRGSTQALVVTALGTTQDEQIVDDIEGDRRE 370

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     + G+     +     G R     ++  +A+  V+   +     I +  +
Sbjct: 371 HFMLHYNFPSFAVGD----ASAIRAPGRREIGHGKLAWKAIHPVLPDKSEFPYTIRVVSE 426

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           ++++DG +  A + G  +AL D                 +K  VA I+ G++        
Sbjct: 427 IMESDGSSSMATVCGTSLALMDTGV-------------PIKSPVAGIAMGLIKDKNDYVI 473

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   + +  S +     L  AK     +++ 
Sbjct: 474 LSDILGDEDYLGDMDFKVAGTSEG-ITALQMDMKISGISFEIVEKSLEQAKAGRLHILEK 532

Query: 234 QKDVISNE 241
              VIS  
Sbjct: 533 MNSVISEH 540



 Score = 78.6 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 91/232 (39%), Gaps = 31/232 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R +SL    +++ A+GS +V +GDT +L T      EE V     N +   I   Y M  
Sbjct: 14  RTLSLETGKIARQADGSVVVNYGDTSILVTVVRKKKEEIVDFLPLNVQF--IAKSYAM-G 70

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125
           R  G   KRE   G+   R   I R+I R++R +  L      +I I C+++  D     
Sbjct: 71  RIPGGFFKRE---GKPSDRETLISRVIDRSIRPLF-LEGFHD-EISIVCNLLTYDTVNPP 125

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDYGEDST 184
              A+ GA  AL                       +A +  G       I++    E   
Sbjct: 126 EVPALIGAVAALA-------------ISGVPFHFIIAGVLVGCDGNNNYILNPSVQEMKV 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             +D  F+  D   I+ V+  +E     +++    +    + +  +IKL K+
Sbjct: 173 SSLDL-FLSGDERSILMVE--SEAKELPEENILNAIKFGHEHLQPVIKLIKE 221


>gi|50119663|ref|YP_048830.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium
           atrosepticum SCRI1043]
 gi|81646171|sp|Q6D9A1|PNP_ERWCT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|49610189|emb|CAG73631.1| polyribonucleotide nucleotidyltransferase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 706

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 97/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELTGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 375 RFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKANEFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKSAVAGIAMGLVKEGDNFVV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISTP 544



 Score = 65.1 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 65/212 (30%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   +  + A  + +V   DT +  T       +     +     +   T   G  P 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLTVNYQERTYAAGRFP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR         R+I R +R +     L   Q+I     +         
Sbjct: 75  --GGFFRRE---GRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQVSPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G +     G L    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFSGPIGVARVGYLNDQYVLNPTTDELKESRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T  G ++ V+  AE    S+D     +
Sbjct: 177 LVVAGTQ-GAVLMVESEAE--LLSEDQMLGAV 205


>gi|294085143|ref|YP_003551903.1| polyribonucleotide nucleotidyltransferase [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664718|gb|ADE39819.1| Polyribonucleotide nucleotidyltransferase [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 709

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 92/244 (37%), Gaps = 18/244 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR    +R I         A GS L   G+T  +  ATL    +E++   +     
Sbjct: 311 VRIDGRDTKTVRAIVSEAGFLPRAHGSALFTRGETQAMVVATLGTGQDEQIIDSLVGEGR 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R     ++  RA+R ++         + +  
Sbjct: 371 SNFMLHYNFPPYSVGEAGR----VGSPGRREIGHGKLAWRAIRPLMPSKEEFPYTVRLVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++ +++G +  A + G  +AL D    +        +  + +G   A+         + D
Sbjct: 427 EITESNGSSSMATVCGGSLALMDSGVPLARPVAGIAMGLIKEGDDFAV---------LSD 477

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     +D+G I  +Q   +  + + +     L+ A+D    ++     
Sbjct: 478 ILGDEDHLGDMDFKVAGSDAG-ITSLQMDIKITSITPEIMQIALDQARDGRIHILGEMAK 536

Query: 237 VISN 240
            +++
Sbjct: 537 ALTS 540



 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 81/228 (35%), Gaps = 31/228 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
            + L    V++ A+G+ +V  G+T +L TA   ++            +T  Y     + G
Sbjct: 15  PLVLESGKVARQADGAVMVTLGETTVLCTAVAAQQAKP---GQDFFPLTVNYQEKAFAAG 71

Query: 72  ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125
                  KRE   GR       + R+I R +R +   S     Q+I  C V+  D     
Sbjct: 72  KIPGGFFKRE---GRPSENETLVCRLIDRPIRPLFPKSFKCETQVI--CTVLSHDMENNP 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
             AA+ GA  AL                     G +A    G +    +++    +    
Sbjct: 127 DIAAMIGASAAL-------------TLSGVPFFGPIAGARIGWINDEYVLNPTVEQMDES 173

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           D+D     T  G ++     +E    S++     +N   D I  +I+ 
Sbjct: 174 DLDLVMAGTMEGVLMV---ESEAQELSEEVMLGAVNFGHDAIKPVIEA 218


>gi|325103803|ref|YP_004273457.1| polyribonucleotide nucleotidyltransferase [Pedobacter saltans DSM
           12145]
 gi|324972651|gb|ADY51635.1| polyribonucleotide nucleotidyltransferase [Pedobacter saltans DSM
           12145]
          Length = 732

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 89/251 (35%), Gaps = 28/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +RL GR   Q+R I         A GS +   G+T  LTT TL       + +    + +
Sbjct: 318 VRLDGRNSKQIRPIWSEVDYLPSAHGSSIFTRGETQSLTTVTLGSNDDEQMIDGAFISGY 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     STG       V  R+ G       +  RA++ V+         I +  
Sbjct: 378 NRFMLHYNFPAFSTGEARPNRGVGRREVGHG----NLAMRAIKKVLPPDNENPYVIRVVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           D+++++G +  A +    +AL D                 +   V+ I+ G++       
Sbjct: 434 DILESNGSSSMATVCAGTLALLDAGIK-------------ISSPVSGIAMGLISDEKTGK 480

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T +G I   Q   +    S D     LN AK+    +
Sbjct: 481 YAILSDILGDEDHLGDMDFKVTGTKNG-ITACQMDLKVNGLSYDVLTEALNQAKEGRLHI 539

Query: 231 IKLQKDVISNE 241
           +      IS  
Sbjct: 540 LGEMAKTISEP 550



 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 82/230 (35%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R I +      K A+GS +VK GDT LL T        E V     +  +    A  G +
Sbjct: 16  RIIEIETGKLAKQADGSVVVKQGDTMLLATVVSNKDAREGVDFLPLSVDYQEKYAASGRI 75

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  ++REA   R       I R++ RALR +         Q++I   +I +D    
Sbjct: 76  P---GGFLRREA---RLSDYEVLISRLVDRALRPLFPEDYHAETQVMIS--LISSDENI- 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                     + D L  +   +          G ++ +    + G  +++    +     
Sbjct: 127 ----------MPDALAGLAASAAIAVSDIPFNGPISEVRVAKIDGQLVINPSRTDLERAT 176

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           ++   V      I  V+G  E     +      +  A + I   + +QK+
Sbjct: 177 LEF-IVAGSEKDINMVEG--ESNEIQEAELVEAIQFAHEAIKKQVAVQKE 223


>gi|16768780|gb|AAL28609.1| LD03255p [Drosophila melanogaster]
          Length = 720

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 91/250 (36%), Gaps = 17/250 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56
           +R  GR  +Q+R IS    + K   GS L + G T +  T +L+ +      ++      
Sbjct: 303 LRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDS 362

Query: 57  GWITA-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           G + A      Y   P +TG   +     G  G R      +  R+L   +         
Sbjct: 363 GGLKAKNFMLHYEFPPYATGEVGR----IGPVGRREMGHGALAERSLLPTLPND--YPFT 416

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
           + +  +V++++G +  A++ G  +AL D    +   +    +  V K      +  +   
Sbjct: 417 VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTK-FENDDTKHLQDY 475

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G    +Q   +            L  A D  ++++
Sbjct: 476 RILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSNIL 534

Query: 232 KLQKDVISNE 241
            +  + I   
Sbjct: 535 DIMSEAIREP 544



 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 84/223 (37%), Gaps = 29/223 (13%)

Query: 22  KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--ITAEYGMLPRSTGNRVKREAV 79
           ++A G+ + + GDT ++ TA     V     N   G+  +  +Y +   ++G R+    +
Sbjct: 10  RFANGTAVCQMGDTAVMVTA-----VAKAKPNPGQGFMPLVVDYRLKNAASG-RIPMNFM 63

Query: 80  SGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137
               G   +EI   R+I R+LR +         Q++ +   + A       AI  A +AL
Sbjct: 64  RRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVHSPDVLAINAASMAL 123

Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197
                                G + A+  G+  G  +++    E  T  +D     T   
Sbjct: 124 S-------------LSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSATKQN 170

Query: 198 HIVEVQGSAERATFSQDHFFAMLN----LAKDRIADLIKLQKD 236
            +V ++G  +     Q      +      A+  I ++ +LQK 
Sbjct: 171 LVVMLEG--KGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKA 211


>gi|317487420|ref|ZP_07946208.1| polyribonucleotide nucleotidyltransferase [Bilophila wadsworthia
           3_1_6]
 gi|316921352|gb|EFV42650.1| polyribonucleotide nucleotidyltransferase [Bilophila wadsworthia
           3_1_6]
          Length = 745

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 87/245 (35%), Gaps = 27/245 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R I +   +   A GS L   G+T  L   TL         ++  G +T 
Sbjct: 323 RIDGRDTKTVRPIEIQPGILPRAHGSALFTRGETQSLCVTTLGSSTDNQRMDSLTGDVTK 382

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G     E    R   R      +  +AL+ ++         + +  +
Sbjct: 383 TFMLHYNFPPFSVG-----EVKPVRVSRREIGHGALAEKALKPIIPAGDGFPFTVRVVAE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
            ++++G +  AA+ G  ++L D                 +   VA ++ G++        
Sbjct: 438 TLESNGSSSMAAVCGGCLSLMDAGV-------------PISDPVAGVAMGLIKEGDNFIV 484

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED+  D+D     T  G +  VQ   +    + +     +  A +    ++  
Sbjct: 485 LTDILGDEDALGDMDFKIAGTAEG-VTAVQMDIKITGLTTEIMRKAMRQAHEARLHILGE 543

Query: 234 QKDVI 238
            K  I
Sbjct: 544 MKKAI 548



 Score = 82.8 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 79/230 (34%), Gaps = 33/230 (14%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--ITAEYG----M 65
           EI L    V+  A GS  ++ G T +L T            +   G+  +T EY      
Sbjct: 18  EIILETGRVATQAHGSVTIQCGGTVVLVTVC------SQPLDFDRGFFPLTVEYSERMYA 71

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
             R  G+  +RE   GR   R   + R+I R +R +         Q++        +  +
Sbjct: 72  AGRIPGSFFRREI--GRPSERETLVSRLIDRPIRPLFPKGLPEDVQVLASVISSDQENES 129

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              +IT A  A+                       VA    G + G  I++    E    
Sbjct: 130 DVLSITAASAAV-------------MLSPLPFAEAVAGGRIGRINGQFILNPTVKE--MA 174

Query: 186 DVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           + D N V   S   +V V+G  E     +D     L   +  I  L++ Q
Sbjct: 175 ESDLNIVFAASADALVMVEG--EATFVPEDVIIDALEWGRKEIQPLVEAQ 222


>gi|328676680|gb|AEB27550.1| Polyribonucleotide nucleotidyltransferase [Francisella cf. novicida
           Fx1]
          Length = 693

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 19/245 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I++   V     GS L   G+T  L   TL       +  +  G    
Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376

Query: 62  E----YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                Y   P S G   +   A   R+ G +     +  RA ++V          + +  
Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKRREIGHA----NLAKRATQAVFPNEEAYPYVVRVVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A + G+ +++ D    + +      +  +  G   A+         + D
Sbjct: 433 EILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGTKYAV---------LSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G +  +Q   +    S++     L  A+     ++ +  +
Sbjct: 484 ILGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNE 542

Query: 237 VISNE 241
           VI   
Sbjct: 543 VIKEH 547



 Score = 71.7 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 82/221 (37%), Gaps = 30/221 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           T  +++ A+GS  V  G+  +L T     ++ +    +  +  +   T   G +P   G 
Sbjct: 19  TGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            ++RE   GR       I R+I R++R           QI+    V+  DG       A+
Sbjct: 76  FLRRE---GRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVAT--VLSYDGAFSPDILAL 130

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  +L       +D              VA +  G   G  I++ +  +    D+D  
Sbjct: 131 IGASASLAISGAPYDDV-------------VAGVRVGYTNGKYILNPNKQDLRDSDLDLV 177

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
              TD   I+ V+  +E  +  +      +  A   +  +I
Sbjct: 178 VSGTDDA-ILMVE--SEANSLPESVMLGGILYAHKHLKTII 215


>gi|297172161|gb|ADI23142.1| hypothetical protein [uncultured gamma proteobacterium
           HF0770_09E07]
          Length = 442

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 92/250 (36%), Gaps = 28/250 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR   ++R+I++         GS L   G+T  + T TL     +     ++     
Sbjct: 66  RIDGRGMTEVRDITIETNFLPSVHGSALFTRGETQAIVTTTLGSGRDVQTVDALQGEIKD 125

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIIDC 116
                Y     S G          R+ G       +  R+L+  V  L       I +  
Sbjct: 126 NFMLHYNFPSYSVGELGFPMGPKRREIGHG----ALAKRSLKFGVPSLEDFP-YAIRVVS 180

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G  +AL                   +K +VA ++ G++       
Sbjct: 181 EITESNGSSSMASVCGGSLALMAAGV-------------PIKENVAGVAMGLIKEGDKYE 227

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G +  +Q   +    +++     L  AKD    +++
Sbjct: 228 VLTDILGDEDHLGDMDFKVAGTKNG-VTGLQMDIKIEGINEEILEKALMQAKDARMHILE 286

Query: 233 LQKDVISNEV 242
               V+S  +
Sbjct: 287 KMDAVLSKPL 296


>gi|318040477|ref|ZP_07972433.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           CB0101]
          Length = 715

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 93/233 (39%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           REI LT    +  A GS +V+ GDT +L TAT     E +        +       G +P
Sbjct: 13  REIRLTTGRFAPQAGGSVMVECGDTAVLVTATRSGGREGIDFLPLICDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G+ ++RE+   R   R+  I R+I R +R +         QI+  C  +        
Sbjct: 73  ---GSFMRRES---RPPERATLIARLIDRPMRPLFPSWLRDDLQIVATCMSLDERVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA +A                      G +AA+  G+L    +++  Y E    D+
Sbjct: 127 LAVTGASLATLLA-------------KIPFHGPMAAVRVGLLGDDFVLNPSYREIERSDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     T  G ++ V+  A +    +      ++   + + +LIK Q+ ++  
Sbjct: 174 DLVVAGTPEG-VIMVEAGANQ--LPEQDVIEAIDFGYEAVCELIKAQQALLKE 223



 Score = 96.3 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 89/249 (35%), Gaps = 27/249 (10%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           R+ GR  +++R IS    V  K   GS L + G T +L+ ATL           +  +  
Sbjct: 323 RVDGRNLDEVRPISAAAGVLPKRVHGSGLFQRGLTQVLSCATLGTPSDAQEMDDLNPSNE 382

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG      +   R+ G       +  RAL  V+         + +  
Sbjct: 383 KTYLHHYNFPPYSTGETKPMRSPGRREIGHG----ALAERALIPVLPSKESFPYVLRVVS 438

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           + + ++G T   ++ G+ +AL D                 LK  V+  + G++       
Sbjct: 439 ECLSSNGSTSMGSVCGSTLALMDAGV-------------PLKAPVSGAAMGLIKEGKEVR 485

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T+ G I  +Q   +            +N A+     +++
Sbjct: 486 ILTDIQGIEDFLGDMDFKVAGTEKG-ITALQMDMKITGLEVKTVAEAINQARPARLHILE 544

Query: 233 LQKDVISNE 241
              + I   
Sbjct: 545 KMLEAIEKP 553


>gi|302763984|ref|XP_002965413.1| hypothetical protein SELMODRAFT_84724 [Selaginella moellendorffii]
 gi|300166227|gb|EFJ32833.1| hypothetical protein SELMODRAFT_84724 [Selaginella moellendorffii]
          Length = 705

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 89/240 (37%), Gaps = 15/240 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKH 56
           +R+ GR    +R++     +     GS L   G+T +L T TL   E       I     
Sbjct: 315 IRVDGRSLTDVRDLYCEAGIYPALHGSSLFSRGNTQVLCTVTLGAPEDAQKLDSIVGPPK 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG-SRQIIID 115
                 Y   P S     K   ++ R+ G       +  +AL +++          + ++
Sbjct: 375 KRFMVHYSFPPFSVNEVGKVGGLNRREVGHGT----LAEKALVALLPPEDENFPYSVRVN 430

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            +V+ +DG +  A + G  +AL D    ++       +   L  +V A +  +     + 
Sbjct: 431 SEVMASDGSSSMATVCGGSLALMDAGIPLKSHVAGISVG--LITNVDAETGEIKNYKILT 488

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN---LAKDRIADLIK 232
           D+   ED   D+D     T  G +  +Q   +            L    +A+ +I DL++
Sbjct: 489 DILGLEDHLGDMDFKIAGTKKG-VTAIQLDIKLPGVPLHILCEALEPAYVARKKILDLME 547



 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 81/237 (34%), Gaps = 34/237 (14%)

Query: 14  ISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++         A G+ +   G+T +L T   +E             +  EY     + G 
Sbjct: 15  LTFETGKLAQFAAGAVVCGAGETKVLVTVVSDE---RLDAGRDFMPLQVEYREKSYAQGK 71

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                ++RE   G    R     R+I R++R +         QI+ +  V+ +DG     
Sbjct: 72  IPNTFMRRE---GAPKERELLCGRVIDRSIRPLFPKGYYFETQIMAN--VLSSDGEQD-- 124

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
                     D L      +          G +  +  G + G  +V+ D   D+    D
Sbjct: 125 ---------PDILAANAASAALALSDVPWNGPIGVVRIGRVDGKFVVNPDM--DTLSGSD 173

Query: 189 ANFVM---TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            N +     +   ++E Q        +   F A L LA    + LI+ Q+  ++ +V
Sbjct: 174 LNLIYSCTAERSLMIETQA----REITNKDFTAALKLAHSEASKLIEPQRR-LAAKV 225


>gi|329120747|ref|ZP_08249409.1| polyribonucleotide nucleotidyltransferase [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327460544|gb|EGF06880.1| polyribonucleotide nucleotidyltransferase [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 701

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 95/241 (39%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I++   V     GS L   G+T  L   TL    +E++   +      
Sbjct: 316 RIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVTTLGTQRDEQIIDALSGEYTD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  A   R+ G      R+  RAL +V+      S  + +  +
Sbjct: 376 RFMLHYNFPPYSTGECGRMGAPKRREIGHG----RLAKRALLAVLPEPEDFSYTMRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  ++L      ++       +  +L+G+  A+         + D+
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAV---------LTDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AK+    ++   K+ 
Sbjct: 483 LGDEDHLGDMDFKVAGTTDG-VTALQMDIKIQGITKEIMQIALAQAKEARLHILGQMKEA 541

Query: 238 I 238
           +
Sbjct: 542 V 542



 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 85/234 (36%), Gaps = 28/234 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+  V  GDT +L   T  ++V      +     +   T   G +P 
Sbjct: 16  VTLETGEIARQAAGAVKVAMGDTVVLVAVTANKEVKAGQDFFPLTVDYLERTYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+Q  +     R+I R +R +         QI+     +  +  +   
Sbjct: 75  --GGFFKRE---GKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    +     +D
Sbjct: 130 AMIGASAALV-------------LSGVPFAGPIGAARVGYVDGGYVLNPTKTQLEKSQLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                T+   ++     +E     +D     +    +++  +I+   + +++EV
Sbjct: 177 LVVAGTEQAVLMV---ESEAQILPEDVMLGAVVYGHEQMQAVIRAINE-LADEV 226


>gi|237722890|ref|ZP_04553371.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_2_4]
 gi|229447412|gb|EEO53203.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_2_4]
          Length = 708

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 90/250 (36%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR+  ++R I           GS +   G+T  LT+ TL  K+   I +        
Sbjct: 319 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLEHGKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +         + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNPGEEKY 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S D     LN AK+    ++
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYDILERALNQAKEGRMHIL 538

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 539 NKITETIAEP 548



 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 34/245 (13%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHG 57
             GR       I+L      K A+GS +++ G+T LL T    ++ VP         ++ 
Sbjct: 12  PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
              A +G  P   G   KRE   GR         R++ RALR +   +     ++ ++  
Sbjct: 66  EKFAAFGRFP---GGFTKRE---GRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNII 117

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +  ADG           V + D L  +   +          G ++ +    + G  +++ 
Sbjct: 118 LFSADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINP 166

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            + +    D+D     T   +I+ V+G  E    S+      + +A + I    K Q + 
Sbjct: 167 TFEQLEKADMDLMVAATYE-NIMMVEG--EMHEVSEAELLEAMKVAHEAIKIHCKAQME- 222

Query: 238 ISNEV 242
           ++ EV
Sbjct: 223 LTEEV 227


>gi|237713950|ref|ZP_04544431.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D1]
 gi|262409141|ref|ZP_06085685.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_22]
 gi|294647465|ref|ZP_06725048.1| polyribonucleotide nucleotidyltransferase [Bacteroides ovatus SD CC
           2a]
 gi|294808931|ref|ZP_06767656.1| polyribonucleotide nucleotidyltransferase [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229446106|gb|EEO51897.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D1]
 gi|262352888|gb|EEZ01984.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 2_1_22]
 gi|292637175|gb|EFF55610.1| polyribonucleotide nucleotidyltransferase [Bacteroides ovatus SD CC
           2a]
 gi|294443866|gb|EFG12608.1| polyribonucleotide nucleotidyltransferase [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 708

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 90/250 (36%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR+  ++R I           GS +   G+T  LT+ TL  K+   I +        
Sbjct: 319 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLEHGKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +         + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNPGEEKY 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S D     LN AK+    ++
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYDILERALNQAKEGRMHIL 538

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 539 NKITETIAEP 548



 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 34/245 (13%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHG 57
             GR       I+L      K A+GS +++ G+T LL T    ++ VP         ++ 
Sbjct: 12  PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
              A +G  P   G   KRE   GR         R++ RALR +   +     ++ ++  
Sbjct: 66  EKFAAFGRFP---GGFTKRE---GRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNII 117

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +  ADG           V + D L  +   +          G ++ +    + G  +++ 
Sbjct: 118 LFSADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINP 166

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            + +    D+D     T   +I+ V+G  E    S+      + +A + I    K Q + 
Sbjct: 167 TFEQLEKADMDLMVAATYE-NIMMVEG--EMHEVSEAELLEAMKVAHEAIKIHCKAQME- 222

Query: 238 ISNEV 242
           ++ EV
Sbjct: 223 LTEEV 227


>gi|150389523|ref|YP_001319572.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus
           metalliredigens QYMF]
 gi|187470926|sp|A6TNZ5|PNP3_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 3; AltName:
           Full=Polynucleotide phosphorylase 3; Short=PNPase 3
 gi|149949385|gb|ABR47913.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus
           metalliredigens QYMF]
          Length = 702

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 95/249 (38%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +R   R+ +++R IS    +   A G+ L   G+T +LT  TL +       +       
Sbjct: 311 IRPDNRKLDEIRPISTQVGILPRAHGTGLFNRGETQVLTITTLGDLRDAQRIDGIGEEDE 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G        S R+ G       ++ RAL  ++         I +  
Sbjct: 371 KRYMHHYNFPPYSVGETRFMRGPSRREIGHG----ALVERALLPMIPSKEDFPYAIRLVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGYPI 174
           +V+  +G +  A++ G+ ++L D                 +K  VA I+ G++      +
Sbjct: 427 EVLTCNGSSSQASVCGSTLSLMDAGV-------------PIKRMVAGIAMGLIKEDDQVV 473

Query: 175 V--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +  D+   ED+  D+D     T+ G I  +Q   + A   +      L  A+     ++ 
Sbjct: 474 ILSDIQGMEDALGDMDLKVAGTEEG-ITAMQMDIKIAGIDRGIMETALEQARIGRLHILN 532

Query: 233 LQKDVISNE 241
             K+ I++ 
Sbjct: 533 KMKESITSP 541



 Score = 84.8 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 92/228 (40%), Gaps = 31/228 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R   +    V++ A+GSC++K+GDT +L TA      +E +  +  +  +       G +
Sbjct: 12  RPFVVEIGKVAELAQGSCMIKYGDTTVLVTACASKEPKEGLDFFPLSCDYEEKLYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE+   R   ++    R+I R +R +         Q+I     +  D    
Sbjct: 72  P---GGFIKRES---RPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATVLSMDQDCPPD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD--YGEDST 184
            +A+ G+ +AL                +    G  A++S GM+ G  IV+      EDST
Sbjct: 126 ISAMIGSSIALS-------------VSNIPFMGPTASVSVGMIDGEYIVNPTSKQKEDST 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++     V      I+ ++  A     ++      +  A + I  ++ 
Sbjct: 173 LE---LIVSGTKNAIMMIEAGANE--LTEAQILDAIMFAHEEIKKIVA 215


>gi|331006254|ref|ZP_08329574.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           IMCC1989]
 gi|330419943|gb|EGG94289.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           IMCC1989]
          Length = 742

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 91/247 (36%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V   A GS L   G+T  +  ATL       I +   G    
Sbjct: 315 RIDGRDTTTVRGIDVEVGVLNKAHGSSLFTRGETQAIVVATLGNARDSQIIDALEGERRD 374

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +  + S R+ G      R+  R + +V+         I I  +
Sbjct: 375 PFMLHYNFPSYSVGECGRMGSTSRREIGHG----RLARRGVAAVLPTQEDFPYTIRIVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +A+ D                 LK  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGASLAMMDAGV-------------PLKAPVAGIAMGLVKEESGFAV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     L  A      ++  
Sbjct: 478 LTDILGDEDHLGDMDFKVAGTAAG-ITALQMDIKIEGITEEIMEIALGQALQARLHILAE 536

Query: 234 QKDVISN 240
              VIS 
Sbjct: 537 MNKVIST 543



 Score = 78.6 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 74/226 (32%), Gaps = 28/226 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A G+ LV  G T +L T       EE    +  +  +       G +P 
Sbjct: 15  VTLETGRVARQATGAVLVSIGKTQVLCTVVGAKQAEEGRGFFPLSVHYVEKAYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KREA   R   +     R+I R +R +     +   Q++      + D     A
Sbjct: 74  --GGFFKREA---RPSEKETLTSRLIDRPIRPLFPNGFMNEVQVVCMVVSAENDVDPDIA 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187
           A+ G   AL                     G +     G       +++  Y   +  ++
Sbjct: 129 AMIGTSAALSISGI-------------PFNGPIGGARVGYTQEAGYVLNPSYSALAESEL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           D     T    ++     +E +   +D     +  A      +++ 
Sbjct: 176 DMVVAGTKDAVLMV---ESEASELPEDIMLGAVLFAHQECQAVVQA 218


>gi|299771757|ref|YP_003733783.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. DR1]
 gi|298701845|gb|ADI92410.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. DR1]
          Length = 697

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 93/246 (37%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L T TL       +      TK  
Sbjct: 317 RIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLSGTKTD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +      R+ G      R+  R +++V+  +      I I  D
Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA ++L D                 LK  VA I+ G++  G     
Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G I  +Q   +    +++     LN A      ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNE 538

Query: 234 QKDVIS 239
              VIS
Sbjct: 539 MNKVIS 544



 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 77/237 (32%), Gaps = 43/237 (18%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           ++ L    V++ A  + L+  G   +L         P          +T  Y     + G
Sbjct: 17  QVVLETGRVARQAN-TVLITMGGVTVLVAVV---AQPKAKAGQDFFPLTVNYQEKQYAAG 72

Query: 72  NRVKREAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDC----DVIQADG 123
              +     G++ GR+ E    I R+I R +R +         Q+          + AD 
Sbjct: 73  ---RIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSSDKTMDAD- 128

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
               AA+ G   AL                    +G +     G++ G  +++ ++ +  
Sbjct: 129 ---IAAMLGTSAALSIAGT-------------PFRGPIGGARVGLINGEYVLNPNFEQLK 172

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233
             D+D     T+S  ++     +E    S+D            + +A   I +    
Sbjct: 173 ESDLDLVVAGTESAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAA 226


>gi|293373410|ref|ZP_06619765.1| polyribonucleotide nucleotidyltransferase [Bacteroides ovatus SD
           CMC 3f]
 gi|298482234|ref|ZP_07000421.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D22]
 gi|292631548|gb|EFF50171.1| polyribonucleotide nucleotidyltransferase [Bacteroides ovatus SD
           CMC 3f]
 gi|295085266|emb|CBK66789.1| polyribonucleotide nucleotidyltransferase [Bacteroides
           xylanisolvens XB1A]
 gi|298271521|gb|EFI13095.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D22]
          Length = 708

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 90/250 (36%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR+  ++R I           GS +   G+T  LT+ TL  K+   I +        
Sbjct: 319 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLEHGKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +         + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNPGEEKY 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S D     LN AK+    ++
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYDILERALNQAKEGRMHIL 538

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 539 NKITETIAEP 548



 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 34/245 (13%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHG 57
             GR       I+L      K A+GS +++ G+T LL T    ++ VP         ++ 
Sbjct: 12  PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
              A +G  P   G   KRE   GR         R++ RALR +   +     ++ ++  
Sbjct: 66  EKFAAFGRFP---GGFTKRE---GRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNII 117

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +  ADG           V + D L  +   +          G ++ +    + G  +++ 
Sbjct: 118 LFSADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINP 166

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            + +    D+D     T   +I+ V+G  E    S+      + +A + I    K Q + 
Sbjct: 167 TFEQLEKADMDLMVAATYE-NIMMVEG--EMHEVSEAELLEAMKVAHEAIKIHCKAQME- 222

Query: 238 ISNEV 242
           ++ EV
Sbjct: 223 LTEEV 227


>gi|134302408|ref|YP_001122378.1| polynucleotide phosphorylase/polyadenylase [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|187610267|sp|A4IZA6|PNP_FRATW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|134050185|gb|ABO47256.1| putative polyribonucleotide nucleotidyltransferase [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 693

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 19/245 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I++   V     GS L   G+T  L   TL       +  +  G    
Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKC 376

Query: 62  E----YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                Y   P S G   +   A   R+ G +     +  RA ++V          + +  
Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKRREIGHA----NLAKRATQAVFPNEEAYPYVVRVVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A + G+ +++ D    + +      +  +  G   A+         + D
Sbjct: 433 EILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAV---------LSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G +  +Q   +    S++     L  A+     ++ +  +
Sbjct: 484 ILGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARVGRLHILGIMNE 542

Query: 237 VISNE 241
           VI   
Sbjct: 543 VIKEH 547



 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 82/221 (37%), Gaps = 30/221 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           T  +++ A+GS  V  G+  +L T     ++ +    +  +  +   T   G +P   G 
Sbjct: 19  TGGMARQADGSVTVSCGNNVVLVTTVVKKSVADGTDFFPLSVHYLEKTYAAGKIP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            ++RE   GR       I R+I R++R           QI+    V+  DG       A+
Sbjct: 76  FLRRE---GRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVAT--VLSYDGAVAPDILAL 130

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  +L       +D              VA +  G   G  I++ +  +    D+D  
Sbjct: 131 IGASASLAISGAPYDDV-------------VAGVRVGYTNGKYILNPNKQDLRDSDLDLV 177

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
              TD   I+ V+  +E  +  +      +  A   +  +I
Sbjct: 178 VSGTDDA-ILMVE--SEANSLPESVMLGGILYAHKHLKTII 215


>gi|315122006|ref|YP_004062495.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495408|gb|ADR52007.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 699

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 91/248 (36%), Gaps = 26/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           +R+ GR    +R+IS    + +   GS     G T  +   TL  K        +  T+ 
Sbjct: 312 IRMDGRDVETVRDISAQVGLLQRTHGSSFFSRGSTQAIVVVTLGTKEDEQYVDSLAGTQR 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  A S R+ G      R+  RA+  ++  +A     + I  
Sbjct: 372 NDFMMHYNFFPFSVGEVGRIGAPSRREIGHG----RLARRAIHPILPQAAQFPYTLRIVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++  ++G +  A + GA +AL D                 +   VA I+ G++       
Sbjct: 428 EITGSNGSSSMATVCGASLALMDAGV-------------PISKPVAGIAMGLVKEDDQFV 474

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED    +D     TDSG I  +Q   +    S+D     L   K     ++ 
Sbjct: 475 VLSDISGEEDHFGHMDFKVSGTDSG-ITAMQMDMKIRGISKDIIMVALQQGKRGRLHILN 533

Query: 233 LQKDVISN 240
               VIS 
Sbjct: 534 EMSKVISE 541



 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 78/230 (33%), Gaps = 34/230 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + L    +++ ++G+ L  +G+T +L T   +       ++     +T  Y     + 
Sbjct: 14  RPLKLETGRIAQQSDGAVLATYGETVVLATVVFDR---NLKKDQDFFPLTVNYQERTYAV 70

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           G      ++RE+   R       I RMI R++R +         Q+II+  V+Q D    
Sbjct: 71  GKIPGGYLRRES---RPTENEVLISRMIDRSIRPLFPKHYKNETQVIIN--VMQHDLEND 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++     AL                    +G +A      +    +++     +  
Sbjct: 126 PHVVSMVAVSAAL-------------MLSGLPFEGPIAGAQVDYVDDKYVLNPPLDGEK- 171

Query: 185 IDVDANFVMTDSGHI-VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
             +D     T    + VE+    E    S+D     +         +I+ 
Sbjct: 172 GSLDLFVSGTRDAVLMVEL----EANQLSEDVVLDAIMFGHAECKPVIEA 217


>gi|241668881|ref|ZP_04756459.1| polynucleotide phosphorylase/polyadenylase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254877413|ref|ZP_05250123.1| polyribonucleotide nucleotidyltransferase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254843434|gb|EET21848.1| polyribonucleotide nucleotidyltransferase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 693

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 88/245 (35%), Gaps = 19/245 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I++   V     GS L   G+T  L   TL           +   +  
Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKS 376

Query: 58  WITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                Y   P S G   +   A   R+ G +     +  RA ++V          + I  
Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKRREIGHA----NLAKRATQAVFPNEEAYPYVVRIVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A + G+ +++ D    + +      +  +  G   A+         + D
Sbjct: 433 EILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAV---------LSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G +  +Q   +    S++     L  A+     ++ +  +
Sbjct: 484 ILGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQALEQARTGRLHILGIMNE 542

Query: 237 VISNE 241
           VI   
Sbjct: 543 VIREH 547



 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 81/221 (36%), Gaps = 30/221 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           T  +++ A+GS  V  G+  +L T     ++      +  +  +   T   G +P   G 
Sbjct: 19  TGGMARQADGSVTVSCGNNVVLVTTVVKKSVAAGADFFPLSVHYLEKTYAAGKIP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            ++RE   GR       I R+I R++R           QI+    V+  DG       A+
Sbjct: 76  FLRRE---GRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVAT--VLSYDGSFSPDMLAL 130

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  +L       +D              +A +  G   G  I++ +  E    D+D  
Sbjct: 131 IGASASLAISGAPYDDI-------------IAGVRVGYTNGKYILNPNKEELKESDLDLV 177

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
              TD   I+ V+  +E  +  +      +  A   +  +I
Sbjct: 178 VSGTDDA-ILMVE--SEANSLPESVMLGGILYAHKHLKTII 215


>gi|188994656|ref|YP_001928908.1| polynucleotide phosphorylase/polyadenylase [Porphyromonas
           gingivalis ATCC 33277]
 gi|188594336|dbj|BAG33311.1| polyribonucleotide nucleotidyltransferase [Porphyromonas gingivalis
           ATCC 33277]
          Length = 774

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 89/244 (36%), Gaps = 24/244 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           RL GR+  ++R I +         GS +   G+T  LTT TL  K    + +    +   
Sbjct: 349 RLDGRKATEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVTLGTKSDEKLVDDVLNYTKE 408

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+ ++         + +  D
Sbjct: 409 RFLLHYNFPPFSTGEARPQRGVGRREIGHG----NLAHRALKRMIPTD--YPYVVRVISD 462

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176
           +++++G +  A +    +AL D    +    +   +          IS      Y I+ D
Sbjct: 463 ILESNGSSSMATVCAGTLALRDAGVQIRKPVSGIAMG--------LISENQGKNYAILSD 514

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIK 232
           +   ED   D+D     T  G I   Q   +    S +     L  AK      +  +++
Sbjct: 515 ILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILENALEQAKQGRLHILGKIME 573

Query: 233 LQKD 236
            Q +
Sbjct: 574 AQPE 577



 Score = 78.6 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 81/227 (35%), Gaps = 21/227 (9%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWITAEYGMLPRS 69
           R I +      K A+G+  V  G+T LL T    ++  P             +Y  + R 
Sbjct: 46  RSIKIETGKLAKQADGAVTVTMGNTVLLATVCAAKDANPGCDFMPLQVEYKEKYSAIGRF 105

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   +RE   G+         R++ RALR +   +     ++ ++  +  ADG      
Sbjct: 106 PGGFTRRE---GKASDYEILTCRLVDRALRPLFPDN--YHAEVFVNVILFSADG------ 154

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
                  + D L  +   +          G ++ +    + G  IV+  + +    D+D 
Sbjct: 155 -----EDMPDALAGLAASAALAVSDIPFNGPISEVRVARVDGRYIVNPTFEQLERADIDL 209

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             V     +I+ V+G  E     +      + +A + I    K Q +
Sbjct: 210 -MVGATMDNIMMVEG--EMDEVQESEMLEGIRVAHEAIKVQCKAQLE 253


>gi|1588265|prf||2208281A 100RNP protein
          Length = 779

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 90/252 (35%), Gaps = 33/252 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R  GR    +R I+    +   A GS L   G+T  L   TL +K      +T  G    
Sbjct: 435 RSDGRTSEGVRPINSRCGLLPRAHGSALFTRGETQALAVVTLGDKQMAQRIDTLEGDDES 494

Query: 58  -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P   G   +  A S R+ G       +  RAL  ++         + ++ 
Sbjct: 495 KRFYLQYSFPPSCVGEAGRVGAPSRREIGHGT----LAERALEPILPSEDEFPYTVRVES 550

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------- 169
           ++ +++G +  A++ G  +AL D                 +K  +A I+ GM+       
Sbjct: 551 NITESNGSSSMASVCGGSLALLDAGV-------------PVKCPIAGIAMGMVLDTKEFG 597

Query: 170 -CGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             G P++  D+   ED++ D+D          +   Q   +    +       L  AKD 
Sbjct: 598 GDGTPLILSDITGSEDASGDMDFKVAGNADC-VTAFQMDIKVGGITLSVMKQALLQAKDG 656

Query: 227 IADLIKLQKDVI 238
              ++      +
Sbjct: 657 RKIILAEMSKCL 668



 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 80/231 (34%), Gaps = 30/231 (12%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R I +      + A G+  V  G+T + TT        E    +  +  +      +   
Sbjct: 85  RHILVETGHIGRQASGAVTVTDGETIVYTTVCMSDIPSEPSDFFPLSVNYQE---RFSAA 141

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
            R++G   KRE   GR       + R+I R LR+ +        QI+    V+  DG   
Sbjct: 142 GRTSGGFFKRE---GRPKDNEVLVCRLIDRPLRTTMLKGFYHETQIL--SWVLSYDG--- 193

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                   +   D L                   VA +  G++ G  IV+    E    +
Sbjct: 194 --------LHPPDALAVTAAGIAVALSELFHTKPVAGVRVGLVGGKYIVNPTTNEMENSE 245

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +D     TDS  I+ ++G        ++     + + +D +     + K+V
Sbjct: 246 LDLVVAGTDSA-ILMIEG--YCNFLPEEKLLEAVEVGQDAVR---AICKEV 290


>gi|78048389|ref|YP_364564.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|325924695|ref|ZP_08186133.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Xanthomonas perforans 91-118]
 gi|123730263|sp|Q3BRP9|PNP_XANC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78036819|emb|CAJ24512.1| polynucleotide phosphorylase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325544901|gb|EGD16246.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Xanthomonas perforans 91-118]
          Length = 704

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR  + +R IS    V     GS L   G+T  +   TL       + +   G   
Sbjct: 315 VRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAVSGEYK 374

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  A   R+ G      R+  R + +V+         I +  
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHG----RLAKRGVLAVMPTLEEFPYTIRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PIKAPVAGIAMGLVKEGNDFV 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  AK     ++ 
Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILG 536

Query: 233 LQKDVISNE 241
                ++  
Sbjct: 537 EMAHALTTP 545



 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 69/192 (35%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ +VKF DT LL TA    +  E    +     +       G +P 
Sbjct: 15  VTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +   I R+I R +R +         QII     +  D     A
Sbjct: 74  --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                    KG + A   G   G  I++    E     ++
Sbjct: 129 ALIGASAALSLAGT-------------PFKGPIGAAKVGYKNGEYILNPTVTELKDSQLE 175

Query: 189 ANFVMTDSGHIV 200
                T +  ++
Sbjct: 176 LVVAGTANAVLM 187


>gi|188589111|ref|YP_001920624.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum
           E3 str. Alaska E43]
 gi|251780820|ref|ZP_04823740.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|226702637|sp|B2V4H5|PNP_CLOBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|188499392|gb|ACD52528.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum E3
           str. Alaska E43]
 gi|243085135|gb|EES51025.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 704

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 88/244 (36%), Gaps = 16/244 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           R  GR  +Q+R +     +     G+ L   G T ++T AT     + ++   I   +  
Sbjct: 312 RPDGRAFDQVRPLGCEVGLLPRTHGTGLFTRGLTQVMTVATLGAVGDIQILDGIDEAQSK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  RAL  ++         I +  +
Sbjct: 372 RYMHHYNFPGYSVGEVKPLRGPGRREIGHG----ALAERALEPLIPSEEEFPYTIRLVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A++ G+ +AL D    ++  +    +  +    ++           + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPLKRPAAGIAMGLITSEDLS-------EEQVLTDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   +   FS +     +  A+     +++   + 
Sbjct: 481 QGIEDFFGDMDFKVAGTTEG-ITSIQVDTKLKGFSFNVVENAIRDARKARMTILEKINEC 539

Query: 238 ISNE 241
           IS+ 
Sbjct: 540 ISSP 543



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 76/214 (35%), Gaps = 26/214 (12%)

Query: 31  KFGDTHLL--TTATLEEKV--PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGR 86
            +GDT +L    A+ E +V    +  + ++       G +P   G  +KRE   GR   +
Sbjct: 32  SYGDTVILTNVNASSEPRVGIDFFPLSVEYEERLYAVGKIP---GGFIKRE---GRPSEK 85

Query: 87  SQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMED 146
           +    R + R LR +         Q++     ++ D      AI  A +AL         
Sbjct: 86  AILNGRAVDRTLRPLFPKGYRNDVQVVCTVVSVEKDNLPEILAINAASMALC-------- 137

Query: 147 CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
                  S      VAA+  G++    IV+ +  E     +      T    ++ ++   
Sbjct: 138 -----LSSIPFAMPVAAVQVGLIDNNFIVNPNATEREESTLHLTVCATKE-RVMMIEAGG 191

Query: 207 ERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 +D   A +    D   ++I  Q++ +  
Sbjct: 192 NEIP--EDIMIAAIKFGFDECQNIINFQEEAVKK 223


>gi|160883669|ref|ZP_02064672.1| hypothetical protein BACOVA_01641 [Bacteroides ovatus ATCC 8483]
 gi|156111082|gb|EDO12827.1| hypothetical protein BACOVA_01641 [Bacteroides ovatus ATCC 8483]
          Length = 752

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 90/250 (36%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR+  ++R I           GS +   G+T  LT+ TL  K+   I +        
Sbjct: 363 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLEHGKE 422

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +         + +  D
Sbjct: 423 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 476

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 477 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNPGEEKY 523

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     LN AK+    ++
Sbjct: 524 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHIL 582

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 583 GKITETIAEP 592



 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 34/245 (13%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHG 57
             GR       I+L      K A+GS +++ G+T LL T    ++ VP         ++ 
Sbjct: 56  PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 109

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
              A +G  P   G   KRE   GR         R++ RALR +   +     ++ ++  
Sbjct: 110 EKFAAFGRFP---GGFTKRE---GRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNII 161

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +  ADG           V + D L  +   +          G ++ +    + G  +++ 
Sbjct: 162 LFSADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINP 210

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            + +    D+D     T   +I+ V+G  E    S+      + +A + I    K Q + 
Sbjct: 211 TFEQLEKADMDLMVAATYE-NIMMVEG--EMHEVSEAELLEAMKVAHEAIKVHCKAQME- 266

Query: 238 ISNEV 242
           ++ EV
Sbjct: 267 LTEEV 271


>gi|320527320|ref|ZP_08028505.1| polyribonucleotide nucleotidyltransferase [Solobacterium moorei
           F0204]
 gi|320132344|gb|EFW24889.1| polyribonucleotide nucleotidyltransferase [Solobacterium moorei
           F0204]
          Length = 752

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 89/245 (36%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +R  GR  +++R +     +     GS +   G+T +L+  TL       + +       
Sbjct: 330 IRPDGRGLDELRPLDSQVDLLPRVHGSAMFTRGETQVLSVTTLGPLSDAQLIDDLTTETE 389

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G  V R +  GR   R      +  RAL  V+  +      I    
Sbjct: 390 KRFMHQYNFPPFSVGE-VGRMSSPGR---REIGHGALGERALLQVLPTAEEFPYAIRTCA 445

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G +  A+I    ++L      ++       +  +  G   +I         + D
Sbjct: 446 EVLESNGSSSQASICAGTMSLMAAGVPIKAMVAGVAMGLITVGDTYSI---------LTD 496

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T +G I  +Q   +    S++     L  A     +++   + 
Sbjct: 497 IQGMEDHYGDMDFKVAGTRNG-ITALQMDIKVTGISEEILREALAQAHKGRMEILDNMET 555

Query: 237 VISNE 241
            IS  
Sbjct: 556 AISTP 560



 Score = 91.7 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 92/232 (39%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67
           R +++    ++K A GS ++++ DT +L+TAT   +      +     +       G +P
Sbjct: 25  RTLTVENGEIAKQAGGSVVIRYADTTVLSTATANNQAKDTDFFPLTVLYQEKMYAAGKIP 84

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR    +    R+I R +R +         QI+        D  +  
Sbjct: 85  ---GGFTRRE---GRPTEHATLTARLIDRPIRPLFAEGFRNEVQIVNTVLSCDPDASSEM 138

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           A++ G+ +AL                     G VA +    + G  I++    ++   D+
Sbjct: 139 ASLFGSSLALC-------------ISDIPFNGPVAGVMVARVDGEYIINPSVEQEKNSDL 185

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T +  I  V+  A+    S++     L +  D I +L  +Q++VI+
Sbjct: 186 NVTVAGTKNA-INMVEAGAKE--VSEEDMLKALMIGHDAIKELCAIQEEVIA 234


>gi|260558389|ref|ZP_05830585.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           C68]
 gi|260075563|gb|EEW63869.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           C68]
          Length = 708

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 88/240 (36%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  L+  T     E ++   +     
Sbjct: 318 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEVS 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL  V+         I +  
Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQVIPSEEEFPYTIRLVA 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      L  AK    ++++
Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALTQAKQARMEILE 539



 Score = 92.1 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 89/231 (38%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L+ A   ++      +     +       G +P
Sbjct: 14  RPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAAGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+      ++ D     
Sbjct: 74  ---GGFIKRE---GRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVETDCSPAM 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  +++    +    D+
Sbjct: 128 AAMLGSSLALS-------------ISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDI 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           +     T    I  V+  A+    S++     L    D I +L+  Q++++
Sbjct: 175 ELTVAGTKQA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIV 222


>gi|299147541|ref|ZP_07040605.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_23]
 gi|298514328|gb|EFI38213.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_23]
          Length = 752

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 90/250 (36%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR+  ++R I           GS +   G+T  LT+ TL  K+   I +        
Sbjct: 363 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLEHGKE 422

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +         + +  D
Sbjct: 423 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 476

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 477 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNPGEEKY 523

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     LN AK+    ++
Sbjct: 524 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHIL 582

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 583 GKITETIAEP 592



 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 34/245 (13%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHG 57
             GR       I+L      K A+GS +++ G+T LL T    ++ VP         ++ 
Sbjct: 56  PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 109

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
              A +G  P   G   KRE   GR         R++ RALR +   +     ++ ++  
Sbjct: 110 EKFAAFGRFP---GGFTKRE---GRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNII 161

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +  ADG           V + D L  +   +          G ++ +    + G  +++ 
Sbjct: 162 LFSADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINP 210

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            + +    D+D     T   +I+ V+G  E    S+      + +A + I    K Q + 
Sbjct: 211 TFEQLEKADMDLMVAATYE-NIMMVEG--EMHEVSEAELLEAMKVAHEAIKIHCKAQME- 266

Query: 238 ISNEV 242
           ++ EV
Sbjct: 267 LTEEV 271


>gi|226313012|ref|YP_002772906.1| polyribonucleotide nucleotidyltransferase [Brevibacillus brevis
           NBRC 100599]
 gi|254782708|sp|C0ZF43|PNP_BREBN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226095960|dbj|BAH44402.1| polyribonucleotide nucleotidyltransferase [Brevibacillus brevis
           NBRC 100599]
          Length = 715

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 84/230 (36%), Gaps = 16/230 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR  N++R +S    +     GS +   G T  L   T  A  + ++   +   + 
Sbjct: 317 VRPDGRALNEIRPLSSETTILSRTHGSAMFTRGQTQALSVCTLGALGDVQILDGLGLEES 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G            G R      +  RA+  ++         I +  
Sbjct: 377 KRFMHHYNFPPYSVGEAR----PLRPPGRREIGHGALGERAIEPIIPSEVEFPYTIRLVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +VI+++G T  A+I  + +AL D    ++       +  ++     + S        + D
Sbjct: 433 EVIESNGSTSQASICASVLALMDAGVPIKAPVAGIAMGLIMSKDEKSFSI-------LTD 485

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           +   ED   D+D     T++G +  +Q   + +  +++     L  A+  
Sbjct: 486 IQGMEDHLGDMDFKVAGTEAG-VTAIQMDIKISGINREILELALEQARVG 534



 Score = 85.9 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R+++L      K A GS LV++GDT +L+  T+    + +  +     +       G +P
Sbjct: 15  RKLTLEFGKMAKQAHGSVLVRYGDTAILSAVTVSKEPKPLDFFPLTVNYEERLYAVGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         QI+     +  D     
Sbjct: 75  ---GGFIKRE---GRPSEKAILASRLIDRPVRPLFAEGFRNDVQIVNTVLSVDQDCSPEI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G   AL                    +G +A +  G + G  +++    +    D+
Sbjct: 129 AAMIGTSAALC-------------VSEIPFEGPIAGVIVGRIDGEFVINPTVAQAEKSDI 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 T    I  V+ +A +    +      +    D I  L++ Q  ++S 
Sbjct: 176 HLTVAGTHKA-INMVEAAANQVP--EAIMLEAIMAGHDVIKQLVEFQNMIVSE 225


>gi|257439280|ref|ZP_05615035.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
           prausnitzii A2-165]
 gi|257198155|gb|EEU96439.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
           prausnitzii A2-165]
          Length = 714

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 87/243 (35%), Gaps = 30/243 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  N++R ++    +     GS +   G T +LTT TL       + +      T 
Sbjct: 322 RVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTK 381

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G            G R      +  RAL  V+         I    +
Sbjct: 382 RYIHHYNFPPYSVGEAR----APRSPGRREIGHGALAERALVPVLPSLEEFPYTIRCVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           V+ ++G T  A+I G+ +AL D                 +K  VA ISCG++        
Sbjct: 438 VLSSNGSTSQASICGSTLALMDAGV-------------PIKAPVAGISCGLITEGDRWMT 484

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IAD 229
           ++D+   ED   D+D     T  G I  +Q   +    + D         +      + +
Sbjct: 485 MLDIQGVEDFHGDMDFKVGGTRKG-ITAIQMDIKIDGLTYDIIAEAFEKCRKGRLYILDE 543

Query: 230 LIK 232
           +IK
Sbjct: 544 IIK 546



 Score = 99.4 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 75/227 (33%), Gaps = 31/227 (13%)

Query: 12  REISLTRRV---SKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYG 64
           R   +          A  S L+++G+T +L          E V  +  N ++       G
Sbjct: 25  RPFKVEMGKMCGLSNA--SALIRYGETCVLCNVVMSPKPREGVDFFPLNVEYEEKLYAAG 82

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+ ++RE   GR G R+    R++ R +R +          I +    +  D  
Sbjct: 83  RIP---GSFMRRE---GRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDPDCS 136

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
              A + GA +                       G +  +  G++ G  +++    +   
Sbjct: 137 PEIAGMIGASLVTA-------------VSEIPWNGPIGGVQVGLVDGEIVLNPTQEQRKV 183

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
            D+      T    IV ++  A      +D     +  A   I  +I
Sbjct: 184 SDLALTVAAT-MDKIVMIEAGANE--VDEDTMLNAIKAAHVEIKKII 227


>gi|325955410|ref|YP_004239070.1| polyribonucleotide nucleotidyltransferase [Weeksella virosa DSM
           16922]
 gi|323438028|gb|ADX68492.1| Polyribonucleotide nucleotidyltransferase [Weeksella virosa DSM
           16922]
          Length = 721

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 85/253 (33%), Gaps = 34/253 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR    +R I     +   A GS +   G+T  L   TL               + 
Sbjct: 320 IRLDGRDPKTIRPIWTEVDILPGAHGSSVFTRGETQALAALTL--GSSRDANLVDGVVLN 377

Query: 61  AE------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
            E      Y   P STG        S R+ G       +  RAL  ++         I +
Sbjct: 378 HEERFFLHYNFPPFSTGEARPLRGTSRREIGHG----NLAQRALTKMIPED--NPYVIRL 431

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V++++G +  A +    +AL D                 +K  V+ I+ G++     
Sbjct: 432 VSEVLESNGSSSMATVCAGTLALMDAGI-------------PIKKPVSGIAMGLITDTKS 478

Query: 172 ---YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED   D+D     T  G I   Q   +    S +     L  A++   
Sbjct: 479 GKWTVLSDILGDEDHLGDMDFKVTGTKDG-ITACQMDIKVQGLSMEIMEKALEQAREGRL 537

Query: 229 DLIKLQKDVISNE 241
            ++    + ++  
Sbjct: 538 HILDKLTETLATP 550



 Score = 75.1 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 83/236 (35%), Gaps = 29/236 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           REIS+     +K A+GS +V+ GDT LL T        E V        +       G +
Sbjct: 16  REISIETGKYAKQADGSVIVRMGDTMLLATVVANKEANEGVDFLPLTVDYREKFYAGGRI 75

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   GN  +REA   +         R++ R LR +         Q++I            
Sbjct: 76  P---GNFFRREA---KPSDDEVLTMRLVDRVLRPMFPEDFHAEVQVMI------------ 117

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             ++      +          S    ++ +    ++      L G  +++    +    D
Sbjct: 118 --SLISYDEKVMPEALAGLAASAAIAITDIPFTLISEARVIRLNGELMINPSREQLEQAD 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           +D   V      +V V+G  E    S+      +  A + I   I+ Q + ++ +V
Sbjct: 176 IDI-MVGASKESVVMVEGEMEE--ISEREMLDAIQFAHEEIKKQIEAQ-ERLAEKV 227


>gi|294675841|ref|YP_003576456.1| polyribonucleotide nucleotidyltransferase [Rhodobacter capsulatus
           SB 1003]
 gi|294474661|gb|ADE84049.1| polyribonucleotide nucleotidyltransferase [Rhodobacter capsulatus
           SB 1003]
          Length = 717

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 93/247 (37%), Gaps = 27/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I     +     GS L   G+T  L   TL       I +  +G   +
Sbjct: 318 RIDGRDNKTVRPIVAEVGILPRTHGSALFTRGETQGLVVTTLGTGDDEQIIDALNGNFRS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+         I +  +
Sbjct: 378 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP- 173
           + +++G +  A++ G  +++ D                 LK  VA ++ G++    G   
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILESDGRWA 480

Query: 174 -IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T++G I  +Q   + A  + +     L  AKD    ++ 
Sbjct: 481 VLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMQQALAQAKDGRMHILG 539

Query: 233 LQKDVIS 239
                +S
Sbjct: 540 EMSKALS 546



 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 77/231 (33%), Gaps = 33/231 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+GS +   G+T ++   T     +     +     +       G +P 
Sbjct: 16  LTLETGKVARQADGSVIATLGETSVMANVTFAKEAKPGQDFFPLTVHYQEKYYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +   + R+I R  R +         ++++   V+  D      
Sbjct: 75  --GGFFKREA---RPSEKETLVSRLIDRPCRPLFVPGF--KNEVLVMATVLSCDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE----D 182
             A+  A  AL                     G + A   G   G  +++    +     
Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIGAARVGFAHGAYVLNPAMDDMTKLR 174

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
              +   + V+  +   V +  S E    ++D     +    +++  +I L
Sbjct: 175 DNPEQRLDLVIAGTKDAVMMVES-EAYELTEDEMLGAVKFGHEQMQPVIDL 224


>gi|118601810|ref|NP_001073074.1| exosome complex component RRP43 [Bos taurus]
 gi|122135904|sp|Q2KHU3|EXOS8_BOVIN RecName: Full=Exosome complex component RRP43; AltName:
           Full=Exosome component 8; AltName: Full=Ribosomal
           RNA-processing protein 43
 gi|86826533|gb|AAI12882.1| Exosome component 8 [Bos taurus]
 gi|296481825|gb|DAA23940.1| exosome complex exonuclease RRP43 [Bos taurus]
          Length = 276

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 87/257 (33%), Gaps = 25/257 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P        G++  
Sbjct: 23  RPDGRELGEFRTTTVNVGSIGTADGSALVKLGNTTVICGIKAEFGAPP-TDAPDKGYVVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115
              + P  +         SG  G  +Q   + I   +    ++    L    G    ++ 
Sbjct: 82  NVDLSPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISSGKLAWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
           CD+  +  DG    A       AL +             + + + K +    ++ H  A 
Sbjct: 137 CDLICLNHDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSCLNIRTHPVAT 196

Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           S  +      IVD    E+         VM + G +  +      +  +       ++ A
Sbjct: 197 SFAVFDDTLLIVDPTEEEEHLATGTLTVVMDEEGRLCCLHKPG-GSGLTGAKLQDCMSRA 255

Query: 224 KDRIADLIKLQKDVISN 240
             R  ++ KL  +V  +
Sbjct: 256 VTRHKEVKKLMDEVFKS 272


>gi|282600044|ref|ZP_05972801.2| polyribonucleotide nucleotidyltransferase [Providencia rustigianii
           DSM 4541]
 gi|282566848|gb|EFB72383.1| polyribonucleotide nucleotidyltransferase [Providencia rustigianii
           DSM 4541]
          Length = 685

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 97/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +    + +   G  T 
Sbjct: 294 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTD 353

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     I +  +
Sbjct: 354 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSHADFPYTIRVVSE 409

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 410 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGNDFVV 456

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++  
Sbjct: 457 LSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITREIMQVALNQAKGARLHILGT 515

Query: 234 QKDVISNE 241
            +  I+  
Sbjct: 516 MEQAINGP 523



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 65/185 (35%), Gaps = 23/185 (12%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           +++ A  + +V   DT +  TA     ++E    +     +   T   G +P   G+  +
Sbjct: 2   IARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNYQERTYAAGRIP---GSFFR 58

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE   GR G     + R+I R LR +     L   QII     +         A+ GA  
Sbjct: 59  RE---GRPGEGETLVARLIDRPLRPLFPEGFLNEIQIIATVVSVNPQVNPDIVAMIGASA 115

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
           AL                     G + A   G +    +++    E  +  +D     TD
Sbjct: 116 ALA-------------LSGVPFNGPIGAARVGYINDQYVLNPTADELKSSRLDLVVAGTD 162

Query: 196 SGHIV 200
           S  ++
Sbjct: 163 SAVLM 167


>gi|187778995|ref|ZP_02995468.1| hypothetical protein CLOSPO_02590 [Clostridium sporogenes ATCC
           15579]
 gi|187772620|gb|EDU36422.1| hypothetical protein CLOSPO_02590 [Clostridium sporogenes ATCC
           15579]
          Length = 702

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 87/244 (35%), Gaps = 16/244 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           R  GR  +++R IS    +     G+ L   G T ++T AT     + ++   I   +  
Sbjct: 312 RPDGRAFDEVRSISCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIAEQESK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  RAL  ++   +     I +  +
Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSESEFPYTIRLVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A++ G+ +AL D    ++  +    +  +    +            I D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLE-------KEKVITDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   + A  S       L  AK     ++   K+ 
Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITSIQFDTKIAGLSNSCVKDALEGAKKARLHILGKIKEC 539

Query: 238 ISNE 241
           I   
Sbjct: 540 IPEP 543



 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 86/236 (36%), Gaps = 31/236 (13%)

Query: 12  REISL---TRRVSKYAEGSCLVKFGDTHLL--TTAT--LEEKVPMWIRNTKHGWITAEYG 64
           R++ +      +   A     + +GDT ++    A+    E +  +  +  +       G
Sbjct: 12  RKMKVDFGKTGMLSNAA--IFMSYGDTVVMINANASKEPREGIDFFPLSVDYEERLYSVG 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G  +KRE   G+   +S    R I R LR +         QI+     ++ D  
Sbjct: 70  KIP---GGFIKRE---GKPSDKSILHARSIDRPLRPLFPKGYRNDVQIVNTVLSVEQDNL 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               AI G+ +AL                S      VAA+S G++ G  I++    +   
Sbjct: 124 PEILAINGSSLALC-------------LSSIPFTTPVAAVSVGLVDGEFIINPTVAQREN 170

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             +D     T    ++ V+   +     ++  +  +    +   +++  Q++ ++ 
Sbjct: 171 TILDLTVCATKE-RVMMVEAGGQE--IDEETMYNAIMFGFEECKNIVAFQEEAMAK 223


>gi|220929129|ref|YP_002506038.1| polynucleotide phosphorylase/polyadenylase [Clostridium
           cellulolyticum H10]
 gi|254782714|sp|B8I2R5|PNP_CLOCE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219999457|gb|ACL76058.1| 3' exoribonuclease [Clostridium cellulolyticum H10]
          Length = 703

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 88/238 (36%), Gaps = 23/238 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ +++R +S    +     GS L + G T +LTT TL     + + +      T 
Sbjct: 312 RIDGRRLDEIRTLSAEVGILPRTHGSGLFERGQTQVLTTVTLGAMGDVQMLDGIDTEETK 371

Query: 62  EYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            Y M   +       EA + R  G R      +  R+L  V+           +  +V+ 
Sbjct: 372 RY-MHHYNFPGYSVGEAKTSRGPGRREIGHGALAERSLVPVIPTETEFPYAFRLVSEVLM 430

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-------P 173
           ++G T   ++ G+ +AL D                 +K  VA IS G++           
Sbjct: 431 SNGSTSQGSVCGSTLALMDAGV-------------PIKAPVAGISAGLVIDEENPDNFVT 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
            +D+   ED   D+D     T  G I  +Q   +    S +       L +     +I
Sbjct: 478 FMDIQGIEDFFGDMDFKVAGTTEG-ITAIQMDIKVDGLSYEIIRQAFELTRMGRLQII 534



 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 82/229 (35%), Gaps = 32/229 (13%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYGML 66
           R +++        A GS L+++GDT ++     +A   + +  +  +  +       G +
Sbjct: 12  RTLTVETGKLAQLANGSALIRYGDTVIMSSATASAAPRDGIDFFPLSVDYEERLYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R +R +          ++     ++ D    
Sbjct: 72  P---GGFIKRE---GKPSEKAILTSRVIDRPIRPLFPKDLRNDVAVVNTVMSVEQDNSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA VA+                     G +  +  G++ G  I++ +  E+    
Sbjct: 126 IAAMIGASVAIS-------------ISDIPFNGPIGGVVLGLVDGEVIINPN--EEQRAK 170

Query: 187 VDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
                 +  +   I  ++  A+           M +  K    ++ K+ 
Sbjct: 171 SKMYVTLAGTKEKITMIEAGADIVP-----DDVMFDAIKKGHEEIKKIC 214


>gi|304320664|ref|YP_003854307.1| Pnp, polyribonucleotide nucleotidyltransferase [Parvularcula
           bermudensis HTCC2503]
 gi|303299566|gb|ADM09165.1| Pnp, polyribonucleotide nucleotidyltransferase [Parvularcula
           bermudensis HTCC2503]
          Length = 708

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 92/242 (38%), Gaps = 18/242 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I     +     GS L   G+T  +  ATL    +E+    +  T   
Sbjct: 316 RIDGRDTKTVRPIESEVGILPRTHGSALFTRGETQAIVVATLGTADDEQFIDALEGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R+V+         I +  +
Sbjct: 376 NFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAVRAVLPSQEEFPYVIRLVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G+ +A+ D    ++       +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMATVCGSSLAMMDAGVPLKRAVAGIAMGLILEGEQFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   + A  +++     L  AKD    ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTSEG-VTSLQMDIKVAGITEEIMQTALGQAKDGRMHILGEMNKA 541

Query: 238 IS 239
           +S
Sbjct: 542 LS 543



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 74/226 (32%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66
           R ++L    +++ A+G+ L  +G+T +L T   +++       +     +   T   G +
Sbjct: 14  RPLTLETGRIARQADGAVLATYGETTVLATVVGQKEAKPGQDFFPLTVNYQEKTYAAGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +     R+I R +R +         Q++        +    
Sbjct: 74  P---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFAPGFKNEVQVVCTVMSHDLENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                     G + A       G  +V+     D    
Sbjct: 128 VVAMIAASAALTISGI-------------PFMGPIGAARVAYKDGEYLVNPTGA-DLEGS 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
              + VM  +   V +  S E    S+D     +        ++I 
Sbjct: 174 -RLDLVMAGTADAVMMVES-EADELSEDIMLGAVIKGHAAAKEMID 217


>gi|283850795|ref|ZP_06368081.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio sp.
           FW1012B]
 gi|283573718|gb|EFC21692.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio sp.
           FW1012B]
          Length = 762

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 90/247 (36%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKH 56
           +RL GR    +R I +   V     GS L   G+T  L  A    T +E+    +    +
Sbjct: 320 IRLDGRDTKSVRPIGIQVGVLPRTHGSTLFARGETKALCVATLGSTGDEQKIETLNGETY 379

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P   G        S R  G       +  R++  V+         + +  
Sbjct: 380 KRFMLHYNFPPYCVGEVKMLRGPSRRDIGHG----ALAERSVLPVLPGPEEFPFTMRVVS 435

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
            V++++G +  A++ GA +AL D                 +K  VA I+ G++       
Sbjct: 436 QVMESNGSSSMASVCGASLALMDAGV-------------PIKQPVAGIAMGLIKEGDDFL 482

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G I  +Q   +     Q      LN AK+    ++ 
Sbjct: 483 ILTDILGDEDAMGDMDFKVAGTADG-ITGIQMDIKITGIPQAVMRQALNQAKEARLHILG 541

Query: 233 LQKDVIS 239
              +V++
Sbjct: 542 RMAEVLA 548



 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 86/230 (37%), Gaps = 28/230 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPRS 69
           I L    ++  A+G+  ++ G T +L TA    L E+   +     +  ++   G +P  
Sbjct: 19  IILETGRLANQADGAVWIQSGGTVVLVTACTQALAEEKGFFPLVVDYQEMSYAAGRIP-- 76

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRT 127
            G+  +RE   GR   R   + R+I R  R +         QII    V+ ADG      
Sbjct: 77  -GSYFRREI--GRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIAT--VLSADGQVEPDV 131

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+T A  ALH             ++  +    V   +  M+    +++L +        
Sbjct: 132 LALTAASTALHISKIPFHGPIAGGRVGYIDGQFVLNPTVPMINAGAVLNLTF----AASR 187

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           DA  ++   G  V           S+D     L      +  L+ LQ+++
Sbjct: 188 DAVVMVEGGGRFV-----------SEDLLADALEWGHKAVQPLLDLQEEM 226


>gi|269103403|ref|ZP_06156100.1| polyribonucleotide nucleotidyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163301|gb|EEZ41797.1| polyribonucleotide nucleotidyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 706

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 94/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+ + +R + +   V     GS L   G+T  L TATL  +        +   K  
Sbjct: 314 RIDGREVDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGEKKD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
           +    Y   P   G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 374 YFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSIDEFPYTVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKSSVAGIAMGLVKEGDDFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     TD G I  +Q   +    +++     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTDDG-ITALQMDIKIEGITKEIMQIALNQAKGARMHILSV 535

Query: 234 QKDVIS 239
             + I+
Sbjct: 536 MDNAIN 541



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 63/212 (29%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +    DT +  +   +    E    +     +   T   G +P 
Sbjct: 15  VTLETGVMARQATAAVMASMDDTSVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +   +     Q+I     +  +      
Sbjct: 74  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPNVSPDII 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + A   G +    +++    E     +D
Sbjct: 129 TMIGTSAALAISGI-------------PFNGPIGAARVGFINDQFVLNPSNVELEESRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T    ++     +E    S++     +
Sbjct: 176 LVVAGTKDAVLMV---ESEADRLSEEQMLQAV 204


>gi|238760238|ref|ZP_04621383.1| hypothetical protein yaldo0001_39430 [Yersinia aldovae ATCC 35236]
 gi|238701561|gb|EEP94133.1| hypothetical protein yaldo0001_39430 [Yersinia aldovae ATCC 35236]
          Length = 706

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 92/245 (37%), Gaps = 20/245 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+   +     I +  +
Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSPSEFPYTIRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176
           + +++G +  A++ GA +AL D    ++       +  V K             + ++ D
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKKD----------DNFVVLSD 480

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ + + 
Sbjct: 481 ILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539

Query: 237 VISNE 241
            IS  
Sbjct: 540 AISTP 544



 Score = 66.3 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 67/212 (31%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           +++   +  + A  + +V   DT +  T   +         +     +   T   G +P 
Sbjct: 16  VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR         R+I R +R +   S L   Q+I     +         
Sbjct: 75  --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +  ++     +E    S+D     +
Sbjct: 177 LVVAGTAAAVLMV---ESEAQILSEDQMLGAV 205


>gi|257885733|ref|ZP_05665386.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,231,501]
 gi|257821589|gb|EEV48719.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,231,501]
          Length = 708

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 88/240 (36%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  L+  T     E ++   +     
Sbjct: 318 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEVS 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL  V+         I +  
Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQVIPSEEEFPYTIRLVA 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      L  AK    ++++
Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALTQAKQARMEILE 539



 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 88/231 (38%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L+ A   ++      +     +       G +P
Sbjct: 14  RPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAAGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+      ++ D     
Sbjct: 74  ---GGFIKRE---GRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVETDCSPAM 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  +++    +    D+
Sbjct: 128 AAMLGSSLALS-------------ISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDI 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           +     T    I  V+  A+    S+      L    D I +L+  Q++++
Sbjct: 175 ELTVAGTKQA-INMVESGAKE--VSEKDMLGALLFGFDAIKELVAFQEEIV 222


>gi|1924972|gb|AAC49669.1| polyribonucleotide phophorylase [Spinacia oleracea]
          Length = 822

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 90/252 (35%), Gaps = 33/252 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R  GR    +R I+    +   A GS L   G+T  L   TL +K      +T  G    
Sbjct: 437 RSDGRTSEGVRPINSRCGLLPRAHGSALFTRGETQALAVVTLGDKQMAQRIDTLEGDDES 496

Query: 58  -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P   G   +  A S R+ G       +  RAL  ++         + ++ 
Sbjct: 497 KRFYLQYSFPPSCVGEAGRVGAPSRREIGHGT----LAERALEPILPSEDEFPYTVRVES 552

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------- 169
           ++ +++G +  A++ G  +AL D                 +K  +A I+ GM+       
Sbjct: 553 NITESNGSSSMASVCGGSLALLDAGV-------------PVKCPIAGIAMGMVLDTKEFG 599

Query: 170 -CGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             G P++  D+   ED++ D+D          +   Q   +    +       L  AKD 
Sbjct: 600 GDGTPLILSDITGSEDASGDMDFKVAGNADC-VTAFQMDIKVGGITLSVMKQALLQAKDG 658

Query: 227 IADLIKLQKDVI 238
              ++      +
Sbjct: 659 RKIILAEMSKCL 670



 Score = 76.7 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 80/231 (34%), Gaps = 30/231 (12%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R I +      + A G+  V  G+T + TT        E    +  +  +      +   
Sbjct: 87  RHILVETGHIGRQASGAVTVTDGETIVYTTVCMSDIPSEPSDFFPLSVNYQE---RFSAA 143

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
            R++G   KRE   GR       + R+I R LR+ +        QI+    V+  DG   
Sbjct: 144 GRTSGGFFKRE---GRPKDNEVLVCRLIDRPLRTTMLKGFYHETQIL--SWVLSYDG--- 195

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                   +   D L                   VA +  G++ G  IV+    E    +
Sbjct: 196 --------LHPPDALAVTAAGIAVALSELPHTKPVAGVRVGLVGGKYIVNPTTNEMENSE 247

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +D     TDS  I+ ++G        ++     + + +D +     + K+V
Sbjct: 248 LDLVVAGTDSA-ILMIEG--YCNFLPEEKLLEAVEVGQDAVR---AICKEV 292


>gi|298373282|ref|ZP_06983271.1| polyribonucleotide nucleotidyltransferase [Bacteroidetes oral taxon
           274 str. F0058]
 gi|298274334|gb|EFI15886.1| polyribonucleotide nucleotidyltransferase [Bacteroidetes oral taxon
           274 str. F0058]
          Length = 741

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 90/250 (36%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           RL GR+ N++R I           GS +   G+T  L+T TL  K+   I +    T   
Sbjct: 319 RLDGRKTNEIRPIWSEVDYLPATHGSAIFTRGETQSLSTVTLGTKLDEKIIDEALITGTD 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG       V  R+ G       +  RAL+ V+  +      I +  D
Sbjct: 379 RFLLHYNFPPFSTGEARPSRGVGRREVGHG----NLALRALKPVIPEN--YKYCIRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           +++++G +  A +    +AL D                 +   V+ I+ G++        
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGV-------------PISKPVSGIAMGLISENKGKNY 479

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     L  A +    ++
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSYEILENALRQAHEGRMHIL 538

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 539 GKITETIAEP 548



 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 87/237 (36%), Gaps = 30/237 (12%)

Query: 6   RQENQM---REISLTRRVS-KYAEGSCLVKFGDTHLLTTA-TLEEKVP---MWIRNTKHG 57
           R+  Q+   REI +      K A+G+ +V  G T LL T  + +E  P       +  + 
Sbjct: 5   RKTVQLPDGREIIIETGKLAKQADGAVMVTLGKTMLLATVCSAQEANPGTDFMPLSVDYK 64

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
              +  G  P   G  ++RE   GR       I R++ RALR +            ++  
Sbjct: 65  EKFSACGRFP---GGFLRRE---GRPSDYEILISRLVDRALRPLFPDDYHAET--FVNVT 116

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +  ADG           V   D L  +   +          G ++ +    + G  +++ 
Sbjct: 117 LYSADG-----------VDAPDALAGLAASAALAVSDIPFGGPISEVRVARIDGEFVINP 165

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
              +    D++     T   +I+ V+G  E    S+D     +  A + I    ++Q
Sbjct: 166 TMEQLQNADLELIVAAT-LDNIMMVEG--EMKEVSEDVLLNAIKAAHEAIKPQCQVQ 219


>gi|209694194|ref|YP_002262122.1| polynucleotide phosphorylase/polyadenylase [Aliivibrio salmonicida
           LFI1238]
 gi|208008145|emb|CAQ78287.1| polyribonucleotide nucleotidyltransferase [Aliivibrio salmonicida
           LFI1238]
          Length = 718

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 97/247 (39%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +    I ++  G    
Sbjct: 325 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDSLMGEKKD 384

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R + +V+         + +  +
Sbjct: 385 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVEEFPYTVRVVSE 440

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 441 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 487

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G I  +Q   +    +++     LN A+     ++ +
Sbjct: 488 LSDILGDEDHLGDMDFKVAGTNAG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILTV 546

Query: 234 QKDVISN 240
             + IS 
Sbjct: 547 MDEAISG 553



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 73/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + +    DT +  +   +++    +       +T  Y     + G 
Sbjct: 26  VTLETGVMARQATAAVMASMDDTSVFVSVVAKKEA---VAGQDFFPLTVNYQERTYAAGK 82

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR         R+I R +R +   +     Q+I     I  D      
Sbjct: 83  IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSINPDVNPDMI 139

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            +     AL                     G + A   G + G  +++    E +   +D
Sbjct: 140 TMIATSAALSIAGV-------------PFNGPIGAARVGHINGELVLNPSNTELANSKLD 186

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T++  ++     +E    S++   + +    D+   +IK   +
Sbjct: 187 LVVSGTEAAVLMV---ESEADNLSEEEMLSAVVFGHDQQQVVIKAINE 231


>gi|328957265|ref|YP_004374651.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp.
           17-4]
 gi|328673589|gb|AEB29635.1| polynucleotide phosphorylase/polyadenylase [Carnobacterium sp.
           17-4]
          Length = 717

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 87/240 (36%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +   A GS L   G T  L+ AT     E ++   +     
Sbjct: 333 IRPDGRKIDEIRSLASEIGLLPRAHGSGLFTRGQTQALSIATLAPLGEHQIIDGLGIENS 392

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+       S   G R      +  RAL  V+         I +  
Sbjct: 393 KRFIHHYNFPQYSVGS----TGPSRGPGRREIGHGALGERALAQVIPSEEDFPYMIRLVA 448

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 449 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVKEGENYT 495

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    +Q      L  AK    +++ 
Sbjct: 496 VLTDIQGLEDHLGDMDFKVAGTSKG-ITALQMDIKIEGITQQILEEALTQAKKARMEILD 554



 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 94/233 (40%), Gaps = 28/233 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ L+++ DT +L+ A   +K   V  +     +       G +P
Sbjct: 29  RTLEIEVGQLAKQANGAALIRYNDTVVLSAAVASKKAKDVDFFPLTVNYDEKMYSVGKIP 88

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KREA   R    +    R+I R +R +         QI      +  +     
Sbjct: 89  ---GGFIKREA---RPSEAATLTARLIDRPIRPMFAEGFRNEVQITNTVMSVDQNCSPAF 142

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           +A+ G+ ++L                     G +A++  G + G  I++    +++  D+
Sbjct: 143 SAMFGSSLSLA-------------ISDIPFNGPIASVDVGRVDGEYIINPTLEQEALSDI 189

Query: 188 DANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                 T    ++VE  G+AE    S++     L    + I +L+  Q+++++
Sbjct: 190 HLTVAGTKDAINMVE-SGAAE---VSEEDMLGALMFGHEAIQELVAFQEEIVA 238


>gi|257887903|ref|ZP_05667556.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,141,733]
 gi|257893296|ref|ZP_05672949.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,231,408]
 gi|257896479|ref|ZP_05676132.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           Com12]
 gi|257899445|ref|ZP_05679098.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           Com15]
 gi|257823957|gb|EEV50889.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,141,733]
 gi|257829675|gb|EEV56282.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,231,408]
 gi|257833044|gb|EEV59465.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           Com12]
 gi|257837357|gb|EEV62431.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           Com15]
          Length = 708

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 88/240 (36%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  L+  T     E ++   +     
Sbjct: 318 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEVS 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL  V+         I +  
Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQVIPSEEEFPYTIRLVA 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      L  AK    ++++
Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALTQAKQARMEILE 539



 Score = 91.7 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 89/231 (38%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L+ A   ++      +     +       G +P
Sbjct: 14  RPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAAGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+      ++ D     
Sbjct: 74  ---GGFIKRE---GRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVETDCSPAM 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  +++    +    D+
Sbjct: 128 AAMLGSSLALS-------------ISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDI 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           +     T    I  V+  A+    S++     L    D I +L+  Q++++
Sbjct: 175 ELTVAGTKQA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIV 222


>gi|257878824|ref|ZP_05658477.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,230,933]
 gi|257881461|ref|ZP_05661114.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,231,502]
 gi|257890683|ref|ZP_05670336.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,231,410]
 gi|261207096|ref|ZP_05921785.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TC
           6]
 gi|289565902|ref|ZP_06446342.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           D344SRF]
 gi|293563621|ref|ZP_06678065.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1162]
 gi|257813052|gb|EEV41810.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,230,933]
 gi|257817119|gb|EEV44447.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,231,502]
 gi|257827043|gb|EEV53669.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           1,231,410]
 gi|260078724|gb|EEW66426.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium TC
           6]
 gi|289162275|gb|EFD10135.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           D344SRF]
 gi|291604421|gb|EFF33911.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecium
           E1162]
          Length = 708

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 88/240 (36%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  L+  T     E ++   +     
Sbjct: 318 IRPDGRKLDEIRPLSSEVSLLPRVHGSGLFTRGQTQALSACTLAPLGEHQIIDGLGVEVS 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL  V+         I +  
Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQVIPSEEEFPYTIRLVA 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      L  AK    ++++
Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALTQAKQARMEILE 539



 Score = 91.7 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 89/231 (38%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L+ A   ++      +     +       G +P
Sbjct: 14  RPLQIEVGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDTDFFPLTINYEEKMYAAGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+      ++ D     
Sbjct: 74  ---GGFIKRE---GRPSTEATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVETDCSPAM 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  +++    +    D+
Sbjct: 128 AAMLGSSLALS-------------ISDIPFDGPIAGVEVGRVNGEYVLNPTVEQAEQTDI 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           +     T    I  V+  A+    S++     L    D I +L+  Q++++
Sbjct: 175 ELTVAGTKQA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIV 222


>gi|325921391|ref|ZP_08183248.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Xanthomonas gardneri ATCC 19865]
 gi|325548149|gb|EGD19146.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Xanthomonas gardneri ATCC 19865]
          Length = 704

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 91/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR  + +R IS+   +     GS L   G+T  +   TL       + +   G   
Sbjct: 315 VRIDGRALDTVRPISVQAGILPRTHGSALFTRGETQAIVVTTLGTARDGQVIDAVSGEYK 374

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  A   R+ G      R+  R + +V+         I +  
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHG----RLAKRGVLAVMPSLEEFPYTIRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEDDRFV 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  AK     ++ 
Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLYILG 536

Query: 233 LQKDVISNE 241
                ++  
Sbjct: 537 EMSKALTTP 545



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 80/228 (35%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ +VKF DT LL TA    +  E    +     +       G +P 
Sbjct: 15  VTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +   I R+I R +R +         QII     +  D     A
Sbjct: 74  --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G   G  I++    E     ++
Sbjct: 129 ALIGASAALSLAGT-------------PFNGPIGAAKVGYKNGEYILNPTISELKDSQLE 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T +  ++     +E A  S++     +      +  +I +  +
Sbjct: 176 LVVAGTANAVLMV---ESEAALLSEEVMLGAVTFGHRELQKVINVINE 220


>gi|295102740|emb|CBL00285.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium
           prausnitzii L2-6]
          Length = 714

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 87/243 (35%), Gaps = 30/243 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  N++R ++    +     GS +   G T +LTT TL       + +      T 
Sbjct: 322 RVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTK 381

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G            G R      +  RAL  V+         I    +
Sbjct: 382 RYIHHYNFPPYSVGEAR----APRSPGRREIGHGALAERALLPVLPSLEEFPYTIRCVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           V+ ++G T  A+I G+ +AL D                 +K  VA ISCG++        
Sbjct: 438 VLSSNGSTSQASICGSTLALMDAGV-------------PIKAPVAGISCGLITEGDRWMT 484

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IAD 229
           ++D+   ED   D+D     T  G I  +Q   +    + D         +      + +
Sbjct: 485 MLDIQGVEDFHGDMDFKVGGTRKG-ITAIQMDIKIDGLTYDIIAEAFEKCRKGRLYILDE 543

Query: 230 LIK 232
           +IK
Sbjct: 544 IIK 546



 Score = 96.3 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 75/227 (33%), Gaps = 31/227 (13%)

Query: 12  REISLTRRV---SKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYG 64
           R   +          A  S L+++G+T ++          E V  +  N ++       G
Sbjct: 25  RPFKVEMGKMCGLSNA--SALIRYGETCVMCNVVMSPKPREGVDFFPLNVEYEEKLYAAG 82

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+ ++RE   GR G R+    R++ R +R +          I +    +  D  
Sbjct: 83  RIP---GSFMRRE---GRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDPDCS 136

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
              A + GA +                       G +  +  G++ G  +++    +   
Sbjct: 137 PEIAGMIGASLVTA-------------VSEIPWNGPIGGVQVGLVDGEIVLNPTQEQRRK 183

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
            D+      T    IV ++  A      +D     +  A   I  +I
Sbjct: 184 SDLALTVAAT-MDKIVMIEAGANE--VDEDTVLNAIKAAHVEIKKII 227


>gi|315637153|ref|ZP_07892375.1| polyribonucleotide nucleotidyltransferase [Arcobacter butzleri
           JV22]
 gi|315478520|gb|EFU69231.1| polyribonucleotide nucleotidyltransferase [Arcobacter butzleri
           JV22]
          Length = 725

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 84/243 (34%), Gaps = 22/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT--TATLEEKVPMWIRNTKHG- 57
           +R  GR    +R IS+   +      SCL   G+T  L   T    +   M+   T    
Sbjct: 334 VRADGRGLKDVRPISIETNILPSTHSSCLFTRGETQALVIGTIAGPKDGQMYEVLTDKST 393

Query: 58  ---WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y     S G       V  R+ G       +  +AL + +D     +  + +
Sbjct: 394 SMENFMVHYNFPGFSVGEAKPMFGVGRRELGHG----NLAKKALEATIDKD--YNETVRL 447

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++++++G +  A + G  +AL      + D      +  V++    AI         +
Sbjct: 448 VSEILESNGSSSMATVCGGSLALKAAGIPISDLVAGVAMGMVVENDKYAI---------L 498

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED   D+D     T  G I  +Q   +            L  AK+    ++ L 
Sbjct: 499 TDIMGLEDHDGDMDFKVAGTSKG-ITALQMDIKLGGIELSVLKEALLQAKEGRTHILSLM 557

Query: 235 KDV 237
           KD 
Sbjct: 558 KDA 560



 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 70/191 (36%), Gaps = 28/191 (14%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPRSTGNRVK 75
           V+K + G+ L K G+  +L T   E   P+    T    ++   T     LP   G  +K
Sbjct: 21  VAKQSNGAVLAKIGNAVVLATVVSEFDNPVSEDFTPLTVQYIEKTYAAAKLP---GGFIK 77

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAAITGA 133
           RE   G+         R+I R+LR +     +    I +   V+ AD      T ++  A
Sbjct: 78  RE---GKPSDFETLTSRVIDRSLRPLFPKGYVYPTTITV--MVLSADKNVDLQTLSLNAA 132

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
             AL+               +  +K  V  +  G +    +++    +     +D  +V 
Sbjct: 133 NAALY-------------TSNLPIKKSVCGVRVGKIENTLVINPTNEQLENSTLDL-YVA 178

Query: 194 TDSGHIVEVQG 204
                ++ ++ 
Sbjct: 179 GSKDELLMIEM 189


>gi|257096736|sp|B6ENE6|PNP_ALISL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 709

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 97/247 (39%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +    I ++  G    
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDSLMGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVEEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G I  +Q   +    +++     LN A+     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNAG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILTV 537

Query: 234 QKDVISN 240
             + IS 
Sbjct: 538 MDEAISG 544



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 73/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + +    DT +  +   +++    +       +T  Y     + G 
Sbjct: 17  VTLETGVMARQATAAVMASMDDTSVFVSVVAKKEA---VAGQDFFPLTVNYQERTYAAGK 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR         R+I R +R +   +     Q+I     I  D      
Sbjct: 74  IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSINPDVNPDMI 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            +     AL                     G + A   G + G  +++    E +   +D
Sbjct: 131 TMIATSAALSIAGV-------------PFNGPIGAARVGHINGELVLNPSNTELANSKLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T++  ++     +E    S++   + +    D+   +IK   +
Sbjct: 178 LVVSGTEAAVLMV---ESEADNLSEEEMLSAVVFGHDQQQVVIKAINE 222


>gi|157737429|ref|YP_001490112.1| polynucleotide phosphorylase/polyadenylase [Arcobacter butzleri
           RM4018]
 gi|187470965|sp|A8EU19|PNP_ARCB4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157699283|gb|ABV67443.1| polyribonucleotide nucleotidyltransferase [Arcobacter butzleri
           RM4018]
          Length = 725

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 84/243 (34%), Gaps = 22/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT--TATLEEKVPMWIRNTKHG- 57
           +R  GR    +R IS+   +      SCL   G+T  L   T    +   M+   T    
Sbjct: 334 VRADGRGLKDVRPISIETNILPSTHSSCLFTRGETQALVIGTIAGPKDGQMYEVLTDKST 393

Query: 58  ---WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y     S G       V  R+ G       +  +AL + +D     +  + +
Sbjct: 394 SMENFMVHYNFPGFSVGEAKPMFGVGRRELGHG----NLAKKALEATIDKD--YNETVRL 447

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++++++G +  A + G  +AL      + D      +  V++    AI         +
Sbjct: 448 VSEILESNGSSSMATVCGGSLALKAAGIPISDLVAGVAMGMVVENDKYAI---------L 498

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED   D+D     T  G I  +Q   +            L  AK+    ++ L 
Sbjct: 499 TDIMGLEDHDGDMDFKVAGTSKG-ITALQMDIKLGGIELSVLKEALLQAKEGRTHILSLM 557

Query: 235 KDV 237
           KD 
Sbjct: 558 KDA 560



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 79/233 (33%), Gaps = 44/233 (18%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHGWITAEYGMLPRSTGNRVK 75
           V+K + G+ L K G+  +L T   E   P+    T    ++   T     LP   G  +K
Sbjct: 21  VAKQSNGAVLAKIGNAVVLATVVSEFDNPVSEDFTPLTVQYIEKTYAAAKLP---GGFIK 77

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR--TAAITGA 133
           RE   G+         R+I R+LR +     +    I +   V+ AD      T ++  A
Sbjct: 78  RE---GKPSDFETLTSRVIDRSLRPLFPKGYVYPTTITV--MVLSADKNVDLQTLSLNAA 132

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
             AL+               +  +K  V  +  G +    +++    +     +D     
Sbjct: 133 NAALY-------------TSNLPIKKSVCGVRVGKIENTLVINPTNEQLENSTLDLYVAG 179

Query: 194 TD------------SGHIVEVQGSA-----ERATFSQDHFFAMLNLAKDRIAD 229
           +             S  +VE+   A           +D     +  A++ + +
Sbjct: 180 SKEELLMIEMKTISSSELVEIDIEAFTKIHNTNEMDEDALVEAIAFAQNALKE 232


>gi|313619127|gb|EFR90919.1| polyribonucleotide nucleotidyltransferase [Listeria innocua FSL
           S4-378]
          Length = 520

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 86/222 (38%), Gaps = 26/222 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ N++R +S    +     GS L   G T  L+  TL    E ++   +   ++
Sbjct: 316 IRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEY 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G    R A   R+ G       +  RAL+ V+         I +  
Sbjct: 376 KRFMHHYNFPQFSVGETGPRRAPGRREIGHG----ALGERALQYVIPSEEEFPYTIRLVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           +V++++G +  A+I G+ +A+ D                 +K  VA I+ G++       
Sbjct: 432 EVLESNGSSSQASICGSTLAMLDAGV-------------PIKAPVAGIAMGLVKLGDDYT 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
            + D+   ED   D+D     T  G I  +Q   +    S+ 
Sbjct: 479 ILSDIQGMEDHFGDMDFKVAGTKDG-ITALQMDIKIDGLSRQ 519



 Score = 95.2 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 26/230 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69
           +S+    ++K A G+ L+++GDT +LT A           +     +       G +P  
Sbjct: 16  LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KRE   GR   R+    R+I R +R +         QI      +  D     AA
Sbjct: 74  -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ VAL                    +G +A +  G + G  +++    +    D+  
Sbjct: 130 MLGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
               T    I  V+  A+    S++     +    + I  L + Q+ +I+
Sbjct: 177 TVAGTYDA-INMVEAGAKE--VSEEAMLEAIMFGHEEIKRLCEFQQQIIA 223


>gi|294634519|ref|ZP_06713054.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda ATCC
           23685]
 gi|291092033|gb|EFE24594.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda ATCC
           23685]
          Length = 713

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 95/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 321 RIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGERTD 380

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 381 RFLLHYNFPPYSVGETGMMGSPKRREIGHG----RLAKRGVLAVMPSQEEFPYTVRVVSE 436

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 437 ITESNGSSSMASVCGASLALMDAGV-------------PVKAAVAGIAMGLVKEQDNFVV 483

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G +  +Q   +    +++     LN AK     ++ +
Sbjct: 484 LSDILGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILSV 542

Query: 234 QKDVIS 239
            +  I+
Sbjct: 543 MEQAIN 548



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 76/234 (32%), Gaps = 28/234 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   +  + A  + +V   DT +  T        E    +     +       G  P 
Sbjct: 22  VTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLTVNYQERAYAAGRFP- 80

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR G     I R+I R +R +     L   Q++     +         
Sbjct: 81  --GGFFRRE---GRPGEGETLIARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQVSPDIV 135

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 136 AMIGASAALTLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKQSRLD 182

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                TD+  ++     +E    S+D     +    D+   +I+  K  ++ EV
Sbjct: 183 LVVAGTDNAVLMV---ESEADLLSEDQMLGAVVFGHDQQQVVIENIK-ALAAEV 232


>gi|90022349|ref|YP_528176.1| polynucleotide phosphorylase/polyadenylase [Saccharophagus
           degradans 2-40]
 gi|122996024|sp|Q21H65|PNP_SACD2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|89951949|gb|ABD81964.1| Polyribonucleotide nucleotidyltransferase [Saccharophagus degradans
           2-40]
          Length = 722

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 94/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R + +   V     GS L   G+T  L  +TL       I +   G    
Sbjct: 327 RIDGRDSKTVRPLHVEVGVLPKVHGSALFTRGETQALVVSTLGSARDAQIIDALEGERKD 386

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R + +V+         + +  +
Sbjct: 387 PFMLHYNFPPYSVGE-CGRMGATGR---REIGHGRLARRGIGAVLPKEEDFPYTMRVVSE 442

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 LK  VA I+ G++    G+ +
Sbjct: 443 ITESNGSSSMASVCGASLALMDAGV-------------PLKAPVAGIAMGLVKEDNGFAV 489

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A D    ++  
Sbjct: 490 LTDILGDEDHLGDMDFKVAGTADG-VTALQMDIKIEGITEEIMEIALGQAMDARLHILAE 548

Query: 234 QKDVISNE 241
              VI++ 
Sbjct: 549 MNRVIASP 556



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 76/231 (32%), Gaps = 32/231 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ L   G T +L   T     +     +  +  +       G +P 
Sbjct: 27  VTLETGRIARQASGAVLASMGQTSVLVAVTGSKEAKPGQDFFPLSVHYQEKAYAAGKIP- 85

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA--DGGTR 126
             G   KREA   R   +     R+I R +R +     L   Q++  C VI A  D    
Sbjct: 86  --GGFFKREA---RPSEKETLTSRLIDRPIRPLFPNGFLNEVQVV--CTVISAEKDVDPD 138

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185
             A+ G   AL                     G + A   G       +++  Y    T 
Sbjct: 139 IVAMIGTSAALAISGI-------------PFNGPIGAARVGYTQESGYLLNPTYSTLKTS 185

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           ++D     T    ++     +E     +D     +  A   +  +++   +
Sbjct: 186 ELDMVVAGTADAVLMV---ESEAKELPEDIMLGAVLYAHQEMQAVVQAVAE 233


>gi|185535745|gb|ACC77873.1| polyribonucleotide nucleotidyltransferase [Staphylococcus xylosus]
          Length = 697

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 83/230 (36%), Gaps = 18/230 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +R  GR+ +++R +     V   A GS L   G T  L+  TL       I +     + 
Sbjct: 318 IRPDGRKTDEIRPLESEVGVLPRAHGSGLFTRGQTQALSVLTLGSMSEYQILDGLGEEEQ 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      +   R+ G       +  RAL  ++         + I  
Sbjct: 378 KRFMHHYNFPNYSVGETGPVRSPGRREIGHG----ALGERALSHIIPDVKDFPYTVRIVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G +  A+I G+ +AL D    ++       +  V +     I         + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTI---------LTD 484

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           +   ED+  D+D     T  G I  +Q   +    +++     L  A+  
Sbjct: 485 IQGMEDALGDMDFKVAGTSEG-ITAIQMDIKIDGLTKEIIKEALEQARVG 533



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 87/232 (37%), Gaps = 28/232 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ LV++GDT +L+TA           +     +       G +P
Sbjct: 15  RSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDGDFFPLMVNYEEKMYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R +         QI+        D     
Sbjct: 75  ---GGFKKRE---GRPSDEATLTARLIDRPIRPLFPKGYKYDVQIMNTVLSADPDCSPEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  I++    +     +
Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYIDGEYIINPTVAQKEVSRL 175

Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D       D+ ++VE    A  +  ++      +      I  L+  Q++++
Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITESEMLEGIFFGHSEIQRLVNFQQEIV 223


>gi|315639994|ref|ZP_07895121.1| polyribonucleotide nucleotidyltransferase [Enterococcus italicus
           DSM 15952]
 gi|315484256|gb|EFU74725.1| polyribonucleotide nucleotidyltransferase [Enterococcus italicus
           DSM 15952]
          Length = 707

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 90/240 (37%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GRQ +++R +S    +     GS L   G T  L+T T     E ++   +   + 
Sbjct: 319 IRPDGRQLDEIRALSSEVGLLPRVHGSGLFTRGQTQALSTCTLAPLGEHQIIDGLGVEES 378

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL  ++         I +  
Sbjct: 379 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQIIPDETDFPYTIRLVA 434

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 435 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 481

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      L  AK    ++++
Sbjct: 482 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILREALAQAKKARMEILE 540



 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 90/233 (38%), Gaps = 28/233 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R +S+    ++K A G+ LV++GDT +L+ A          ++T    +T  Y     + 
Sbjct: 13  RPLSVEIGQLAKQANGAVLVRYGDTVVLSAAV----ASKEAKDTDFFPLTINYEEKMYAV 68

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G      +KRE   GR    +    R+I R +R +         Q+      ++ D    
Sbjct: 69  GKIPGGFIKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVTNIVMSVEQDCSPA 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ G+ +AL                     G +A +  G + G  +++    ++   D
Sbjct: 126 MAAMLGSSLALS-------------ISDIPFDGPIAGVDVGRVNGEYVLNPTVEQNEESD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +      T    I  V+  A+    S+      L    + I +L+  QK+V++
Sbjct: 173 IHLTVAGTAQA-INMVESGAKE--VSEADMLGALLFGHEAIQELVAFQKEVVA 222


>gi|242373566|ref|ZP_04819140.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis M23864:W1]
 gi|242348929|gb|EES40531.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
           epidermidis M23864:W1]
          Length = 699

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 18/230 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +     +     GS L   G T  L+     A  + ++   +     
Sbjct: 318 IRPDGRKVDEIRPLDSEVGLLPRVHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEVE 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RALR ++  +      I I  
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHG----ALGERALRYIIPDTTDFPYTIRIVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G +  A+I G+ +AL D    ++       +  V +     I         + D
Sbjct: 434 EVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYTI---------LTD 484

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           +   ED+  D+D     T  G I  +Q   +    +++     L  A+  
Sbjct: 485 IQGMEDALGDMDFKVAGTKEG-ITAIQMDIKIDGLTREVIEEALEQARQG 533



 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 28/232 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R +++    ++K A G+ LV++GDT +L+TAT          +     +       G +P
Sbjct: 15  RSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLTVNYEEKMYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR G  +    R+I R +R +         QI+        D     
Sbjct: 75  ---GGFKKRE---GRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPEM 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                    +G +A ++ G + G  +++    E     +
Sbjct: 129 AAMIGSSMALS-------------VSDIPFQGPIAGVNVGYVDGNYVINPSVSEKEVSRL 175

Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D       D+ ++VE    A  +  ++      +    + I  L+  Q+++I
Sbjct: 176 DLEVAGHKDAVNMVE----AGASEITESEMLEAIFFGHEEIKRLVAFQQEII 223


>gi|42523058|ref|NP_968438.1| polynucleotide phosphorylase/polyadenylase [Bdellovibrio
           bacteriovorus HD100]
 gi|81617621|sp|Q6MMS2|PNP_BDEBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|39575263|emb|CAE79431.1| polyribonucleotide nucleotidyltransferase [Bdellovibrio
           bacteriovorus HD100]
          Length = 697

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 95/244 (38%), Gaps = 20/244 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56
           +R+ GR    +R I+    +   A GS L   G+T +L T TL       + ++    + 
Sbjct: 317 VRIDGRDVKTVRPIANEVGILPRAHGSGLFTRGETQVLGTVTLGTADDEQMVDSLLGLQK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIID 115
                 Y   P S G   +    S R+ G       +  RA+++V+ D        I I 
Sbjct: 377 RKFMLHYNFPPYSVGEVGRMSGTSRREIGHG----NLAERAIKAVLPDFEKFP-YTIRIV 431

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            +V++++G +    +    +AL D    ++       +  + +G   A+         + 
Sbjct: 432 SEVLESNGSSSMGTVCSGIMALLDAGVPLKGNVAGVAMGLIKEGDRVAV---------LT 482

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     + +G I  +Q   +  + S +     L  AK+  A ++   +
Sbjct: 483 DILGDEDHLGDMDFKVAGSPAG-ITALQMDIKIDSVSFEVMEQALAQAKEGRAHILNEME 541

Query: 236 DVIS 239
            V+ 
Sbjct: 542 KVMK 545



 Score = 85.5 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 87/231 (37%), Gaps = 32/231 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           +I++    ++K A+G+ LV  G+  +L TAT  +K            +T EY     +TG
Sbjct: 13  QITIETGRLAKQADGAALVSSGNNMVLVTATSSKKASELDFFP----LTVEYIEKFYATG 68

Query: 72  ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG--T 125
                  KREA   +    +  I R+I R +R V         QI+    V+ ADG    
Sbjct: 69  KIPGGYFKREA---KPTNDAVLIARLIDRPIRPVFPEGYRHETQIVAT--VLSADGAFPL 123

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              A  GA  ALH                    G  AA+    + G  + +    +    
Sbjct: 124 EILASLGASAALH-------------CSDIPFNGPTAAVQIARVDGQFVANPTPQQMEKS 170

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D+D     T +G ++ V+G  E    S+    A L      +  L+  Q +
Sbjct: 171 DMDMIVAGTRNG-LLMVEG--ETKFISEADALAALKFGHQSLIPLLNAQDE 218


>gi|213854708|ref|ZP_03382948.1| defective ribonuclease PH [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 80

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 55/82 (67%), Gaps = 2/82 (2%)

Query: 107 LGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC 166
           +G   I +DCDV+QADGGTRTA+ITGA VAL D LQ + +  N    +  +KG VAA+S 
Sbjct: 1   MGEFTITLDCDVLQADGGTRTASITGACVALVDALQKLVE--NGKLKTNPMKGMVAAVSV 58

Query: 167 GMLCGYPIVDLDYGEDSTIDVD 188
           G++ G  + DL+Y EDS  + D
Sbjct: 59  GIVNGEAVCDLEYVEDSAAETD 80


>gi|194476549|ref|YP_002048728.1| polyribonucleotide nucleotidyltransferase [Paulinella
           chromatophora]
 gi|171191556|gb|ACB42518.1| polyribonucleotide nucleotidyltransferase [Paulinella
           chromatophora]
          Length = 724

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 89/234 (38%), Gaps = 28/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66
           REI LT    +  A GS LV+ GDT +L T T                +T +Y       
Sbjct: 13  REIRLTTGRYAPQASGSVLVECGDTAVLVTIT----RSNSREGVDFLPLTCDYEERLYAA 68

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
            R  G+ ++RE    R   R+  I R+I R +R +         QI+  C  +       
Sbjct: 69  GRIPGSFMRRE---NRPPERAILIARLIDRPMRPLFPSWMRDDIQIVATCLSLDERVPPD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A TGA +A                      G +A +  G+L    I++  Y E    D
Sbjct: 126 VLAATGASIATLIA-------------KIPFHGPMATVRVGLLGDDFILNPSYREIERSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +D     T  G +V V+  A +   ++      ++   + + +LIK Q  ++ +
Sbjct: 173 LDLVVAGTPDG-VVMVEAGANQ--LAEQDVIEAIDFGYEAVVELIKAQNKILQD 223



 Score = 94.8 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 90/251 (35%), Gaps = 31/251 (12%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R+ GR  +++R I  +  +  K   GS L + G T +L+TATL    P   +        
Sbjct: 323 RIDGRSLSEIRPIISSVGILPKRVHGSSLFQRGLTQVLSTATL--GTPSDAQEMDDLNPA 380

Query: 61  AE------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
            E      Y   P S G      +   R+ G       +  RA+  V+         + +
Sbjct: 381 TEKTYLHHYNFPPYSVGETRPMRSPGRREIGHGV----LAERAIAPVLPDKENFPYVLRV 436

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V+ ++G T   A+    +AL D                 LK  V+  + G++     
Sbjct: 437 VSEVLSSNGSTSMGAVCSGTLALMDAGV-------------PLKAPVSGAAMGLIKEGEE 483

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T+ G I  +Q   +      +     +N A+     +
Sbjct: 484 VRILTDIQGIEDFLGDMDFKVAGTEKG-ITALQMDMKMTGLEMETIAEAINQARPARLHI 542

Query: 231 IKLQKDVISNE 241
           ++   + I   
Sbjct: 543 LEKMLEAIDKP 553


>gi|146337231|ref|YP_001202279.1| polynucleotide phosphorylase/polyadenylase [Bradyrhizobium sp.
           ORS278]
 gi|187470941|sp|A4YJF3|PNP_BRASO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146190037|emb|CAL74029.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Bradyrhizobium sp. ORS278]
          Length = 719

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 87/241 (36%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I     V   A GS L   G+T  L   TL           +  T   
Sbjct: 316 RIDGRDAKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDALSGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      ++  RA+  V+           +  +
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHG----KLAWRAIHPVLPPHHEFPYTTRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V +++G +  A + G+ +AL D    ++  +    +  +L+G   A+         + D+
Sbjct: 432 VTESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+SG I  +Q   +    +++     L  A++    ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTESG-ITSLQMDIKIEGITEEIMRVALGQAREGRIHILGEMSKA 541

Query: 238 I 238
           +
Sbjct: 542 L 542



 Score = 75.1 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 79/236 (33%), Gaps = 38/236 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ +  +G+T +L T        + V        +       G +
Sbjct: 14  RPLKLETGKIARQADGAVVATYGETVVLATVVAAKAPRDGVDFLPLTVDYQEKAYAAGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +   + R+I R +R +   S     Q+I+       +    
Sbjct: 74  P---GGYFKRE---GRPTEKETLVSRLIDRPIRPLFVDSWRNETQVIVTVLSHDMENDP- 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                       D +  +   +         KG + A   G      I++    E +   
Sbjct: 127 ------------DIVALVAASAALTLSGVPFKGPIGAARVGFANDEYILNPTLDEMADTQ 174

Query: 187 VDANFVMTDSGHIVEVQGSAER---------ATFSQDHF----FAMLNLAKDRIAD 229
           +D     T S  ++ V+  A+            F   HF     A++ LA+    D
Sbjct: 175 LDLVVAGT-SDAVLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKD 229


>gi|326567242|gb|EGE17362.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           12P80B1]
          Length = 695

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKHG 57
           R+ GR    +R + +   V  Y  GS L   G+T  L   TL     V +   +  TK  
Sbjct: 317 RIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLGTTRDVNLVDTLAGTKQD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +  A   R+ G      R+  R +++++  +      I +  +
Sbjct: 377 HFMLHYNFPHYSVGETGREGAPKRREIGHG----RLARRGVQAMLPAAERFPYTIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA ++L D                 LK  VA I+ G++  G     
Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G I  +Q   +    + D     L  A      ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGSVNG-ITALQMDIKIEGITADIMEQALKQAHAGRIHILNA 538

Query: 234 QKDVISN 240
             +VI+ 
Sbjct: 539 MNEVIAT 545



 Score = 65.1 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 66/214 (30%), Gaps = 30/214 (14%)

Query: 13  EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           ++ L          S LV  G              P  I       +T  Y     ++G 
Sbjct: 15  QVVLETGRIARQANSVLVHMGGVS---VLVAVVVRPEAIAGQNFFPLTVNYQEKMYASG- 70

Query: 73  RVKREAVSGRQGGRSQEI----QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126
             K     G++ GR+ E      R+I R +R +          I +   VI +D      
Sbjct: 71  --KIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNE--IQVTATVISSDKTQDAD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA  AL                     G + A   G + G  +++    E    D
Sbjct: 127 IAAMIGASAALA-------------ISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSD 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +D     T S  ++     +E    S+D     +
Sbjct: 174 LDLVVAGTKSAVLMV---ESEAKELSEDQMLGAV 204


>gi|326565074|gb|EGE15267.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           46P47B1]
          Length = 665

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKHG 57
           R+ GR    +R + +   V  Y  GS L   G+T  L   TL     V +   +  TK  
Sbjct: 317 RIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLGTTRDVNLVDTLAGTKQD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +  A   R+ G      R+  R +++++  +      I +  +
Sbjct: 377 HFMLHYNFPHYSVGETGREGAPKRREIGHG----RLARRGVQAMLPAAERFPYTIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA ++L D                 LK  VA I+ G++  G     
Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G I  +Q   +    + D     L  A      ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGSVNG-ITALQMDIKIEGITADIMEQALKQAHAGRIHILNA 538

Query: 234 QKDVISN 240
             +VI+ 
Sbjct: 539 MNEVIAT 545



 Score = 65.1 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 66/214 (30%), Gaps = 30/214 (14%)

Query: 13  EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           ++ L          S LV  G              P  I       +T  Y     ++G 
Sbjct: 15  QVVLETGRIARQANSVLVHMGGVS---VLVAVVVRPEAIAGQNFFPLTVNYQEKMYASG- 70

Query: 73  RVKREAVSGRQGGRSQEI----QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126
             K     G++ GR+ E      R+I R +R +          I +   VI +D      
Sbjct: 71  --KIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNE--IQVTATVISSDKTQDAD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA  AL                     G + A   G + G  +++    E    D
Sbjct: 127 IAAMIGASAALA-------------ISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSD 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +D     T S  ++     +E    S+D     +
Sbjct: 174 LDLVVAGTKSAVLMV---ESEAKELSEDQMLGAV 204


>gi|126175434|ref|YP_001051583.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica
           OS155]
 gi|125998639|gb|ABN62714.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
           OS155]
          Length = 703

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 92/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+ + +R +S+   V     GS L   G+T  L T TL  +        I   +  
Sbjct: 317 RIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      ++  R + +V+  +A     + +  +
Sbjct: 377 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPSAAEFPYSVRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     L  A      ++ +
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMDIALQQAYGARVHILNV 538

Query: 234 QKDVISNE 241
               I + 
Sbjct: 539 MDQAIGSH 546



 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 67/208 (32%), Gaps = 27/208 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A+ + L   GDT +L T   +++       +     +   T   G +P 
Sbjct: 18  VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTVNYQEKTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+II    +         
Sbjct: 77  --GGFFKRE---GRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++            
Sbjct: 132 SMIGTSAALAISGI-------------PFSGPLGAARVGYIDGEYVLNPSVA--QLATSQ 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHF 216
            N V+  +   V +  S E     ++  
Sbjct: 177 LNLVVAGTAGAVLMVES-EAQALPEEVM 203


>gi|190571231|ref|YP_001975589.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
 gi|226704831|sp|B3CM21|PNP_WOLPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|190357503|emb|CAQ54939.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
          Length = 758

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 94/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTA---TLEEKVPMWIRNTKH 56
           +R+  R+ +++R+I +   +     GS L   G T  L  TA   T +E++   I   + 
Sbjct: 310 VRIDSRKYDEIRQIEIEADILPKTHGSALFTRGSTQALVVTALGTTQDEQIVDDIEGDRR 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P + G      +     G R     ++  +A+  V+   +     I +  
Sbjct: 370 EHFMLHYNFPPFAVGE----ASAIRAPGRREIGHGKLAWKAIHPVLPDKSEFPYTIRVVS 425

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +++++DG +  A + G  +AL D                 +K  VA I+ G++       
Sbjct: 426 EIMESDGSSSMATVCGTSIALMDTGV-------------PIKAPVAGIAMGLIKDKNEHI 472

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S +     L  AK     +++
Sbjct: 473 ILSDILGDEDYLGDMDFKVAGTSEG-ITALQMDMKIPGISFEIVEKSLEQAKVGRLHILE 531

Query: 233 LQKDVISNE 241
               VIS  
Sbjct: 532 KMNAVISEH 540



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 90/234 (38%), Gaps = 31/234 (13%)

Query: 10  QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGM 65
           + R +SL    +++ A+GS +V +GDT +L T      EE V     N +   I   Y M
Sbjct: 12  EGRTLSLETGKIARQADGSVVVNYGDTSILVTVVRKKKEESVDFLPLNVQF--IAKSYAM 69

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--G 123
                G   KRE   G+   R   I R+I R++R +          I + C+++  D   
Sbjct: 70  GKIP-GGFFKRE---GKPSDRETLISRVIDRSIRPLFPEGFHDE--ISVVCNLLTYDTVN 123

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDYGED 182
                A+ G   AL                       +A +  G       I++    E 
Sbjct: 124 SPEVPALIGTVAALA-------------ISGVPFHFTIAGVMVGCDENNNYILNPSVQEM 170

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              ++D  F+  D   I+ V+  +E    S+++    +    + +  +IKL K+
Sbjct: 171 KASNLDL-FLSGDENSILMVE--SEVKELSEENVLNAIKFGHEHLQPVIKLIKE 221


>gi|220922849|ref|YP_002498151.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
           nodulans ORS 2060]
 gi|254782728|sp|B8IGX3|PNP_METNO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219947456|gb|ACL57848.1| 3' exoribonuclease [Methylobacterium nodulans ORS 2060]
          Length = 725

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 89/241 (36%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     V   A GS L   G+T  L  ATL         +   G    
Sbjct: 316 RIDGRDVRTVRPILSEVGVLPRAHGSALFTRGETQALVVATLGTGDDEQFIDALEGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++  +      I +  +
Sbjct: 376 TFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAVHPLLPAAHEFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G+ +AL D    +        +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMATVCGSSLALMDAGVPLRRPVAGIAMGLILEGERFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   + A  +++     L+ AKD  A ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTSEG-VTSLQMDIKIAGITEEIMRVALDQAKDGRAHILGEMAKA 541

Query: 238 I 238
           +
Sbjct: 542 L 542



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 88/255 (34%), Gaps = 48/255 (18%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA-TLEEKVPMWIRNTKHGWITAEYGMLPRS 69
           R++ L    V++ A+G+ +  +G+T +L T  +L+E  P          +T  Y     +
Sbjct: 14  RKLVLETGKVARQADGAVVASYGETTVLATVVSLKEPKP----GIDFLPLTVNYQERAYA 69

Query: 70  TG----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
            G       KRE   GR   +   + R+I R +R +         Q+++       +   
Sbjct: 70  AGRIPGGYFKRE---GRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLENDP 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              ++  A  AL                     G + A   G +     ++    E    
Sbjct: 127 DIVSMVAASAAL-------------TLSGVPFMGPIGAARVGYVGNQYKLNPTIQEMEGS 173

Query: 186 DVDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLN----LAKDRIAD--- 229
            +D     T++  ++ V+  A+            F   HF  ++     LA+    +   
Sbjct: 174 SLDLVVAGTEAA-VLMVESEAKELPEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRD 232

Query: 230 -----LIKLQKDVIS 239
                L +++K V+ 
Sbjct: 233 FQPTDLSEVEKAVLE 247


>gi|302788516|ref|XP_002976027.1| hypothetical protein SELMODRAFT_104548 [Selaginella moellendorffii]
 gi|300156303|gb|EFJ22932.1| hypothetical protein SELMODRAFT_104548 [Selaginella moellendorffii]
          Length = 705

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 89/240 (37%), Gaps = 15/240 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKH 56
           +R+ GR    +R++     +     GS L   G+T +L T TL   E       I     
Sbjct: 315 IRVDGRSLTDVRDLYCEAGIYPALHGSSLFSRGNTQVLCTVTLGAPEDAQKLDSIVGPPK 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG-SRQIIID 115
                 Y   P S     K   ++ R+ G       +  +AL +++          + ++
Sbjct: 375 KRFMVHYSFPPFSVNEVGKVGGLNRREVGHGT----LAEKALVALLPPEDENFPYSVRVN 430

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            +V+ +DG +  A + G  +AL D    ++       +   L  +V A +  +     + 
Sbjct: 431 SEVMASDGSSSMATVCGGSLALMDAGIPLKSHVAGISVG--LMTNVDAETGEIKNYKILT 488

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN---LAKDRIADLIK 232
           D+   ED   D+D     T  G +  +Q   +            L    +A+ +I DL++
Sbjct: 489 DILGLEDHLGDMDFKIAGTKKG-VTAIQLDIKLPGVPLHILCEALEPAYVARKKILDLME 547



 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 81/237 (34%), Gaps = 34/237 (14%)

Query: 14  ISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++         A G+ +   G+T +L T   +E             +  EY     + G 
Sbjct: 15  LTFETGKLAQFAAGAVVCGAGETKVLVTVVSDE---RLDAGRDFMPLQVEYREKSYAQGK 71

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                ++RE   G    R     R+I R++R +         QI+ +  V+ +DG     
Sbjct: 72  IPNTFMRRE---GAPKERELLCGRVIDRSIRPLFPKGYYFETQIMAN--VLCSDGEQD-- 124

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
                     D L      +          G +  +  G + G  +V+ D   D+    D
Sbjct: 125 ---------PDILAANAASAALALSDVPWNGPIGVVRIGRVDGKFVVNPDM--DTLSGSD 173

Query: 189 ANFVM---TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            N +     +   ++E Q        +   F A L LA    + LI+ Q+  ++ +V
Sbjct: 174 LNLIYSCTAERSLMIETQA----REITNKDFTAALKLAHSEASKLIEPQRR-LAAKV 225


>gi|149635838|ref|XP_001511768.1| PREDICTED: similar to Chain C, Structure Of The Human Rna Exosome
           Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42,
           Csl4, Rrp4, And Rrp40 [Ornithorhynchus anatinus]
          Length = 276

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 87/257 (33%), Gaps = 25/257 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P        G++  
Sbjct: 23  RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFTAPPG-DAPNKGYVVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115
              + P  +          G  G  +Q   + I   +    ++    L    G    ++ 
Sbjct: 82  NVDLPPLCSS-----RFRPGPPGEEAQVASQFINDVIENSQLIAKEDLCISKGKLAWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
           CD+  +  DG    A       AL +             + + + K +    ++ +  A 
Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPAVVINEETGLAEVNFKQKTPLNIRAYPIAT 196

Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           S  +      IVD    E++        VM + G +  +      +  +       L+ A
Sbjct: 197 SFAIFDNTILIVDPTGEEENLATGTLTVVMDEEGKLCCLHKPG-GSALAGTKLQDCLSRA 255

Query: 224 KDRIADLIKLQKDVISN 240
             R  ++  L  +VI +
Sbjct: 256 VTRHKEVKVLMDEVIQS 272


>gi|73969672|ref|XP_538497.2| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1
           isoform 1 [Canis familiaris]
          Length = 789

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 89/249 (35%), Gaps = 19/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R I+    + K   GS L + G T +  T T +        +++   I  
Sbjct: 363 RCDGRDLTSLRNINCEVDLFKTLHGSALFQRGQTQVFCTVTFDSLESSIKSDRIITAING 422

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   V+ R+ G       +  +AL  V+         I 
Sbjct: 423 IKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHG----ALAEKALYPVIPKDF--PFTIR 476

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  V K +      G +  Y 
Sbjct: 477 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAIGLVTKNNP---DKGEIEDYR 533

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T  G I  +Q   +            +  A     ++++
Sbjct: 534 LLTDILGIEDYNGDMDFKIAGTSKG-ITALQADIKLPGIPIKIVMEAIQQASVAKREILQ 592

Query: 233 LQKDVISNE 241
           +    IS  
Sbjct: 593 IMNKTISKP 601



 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 69/184 (37%), Gaps = 26/184 (14%)

Query: 30  VKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGR 86
           +K GDT ++ TA   T             +    A  G +P    N ++RE  S     +
Sbjct: 78  LKSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP---TNYLRREVGS---SDK 131

Query: 87  SQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAWVALHDCLQHM 144
                R+I R++R +         Q++  C+++  DG       AI GA VAL       
Sbjct: 132 EVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNEPDVLAINGASVALS------ 183

Query: 145 EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
                         G + A+  GM+ G  +V+    E S+  ++          IV ++ 
Sbjct: 184 -------LSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQIVMMEA 236

Query: 205 SAER 208
           SAE 
Sbjct: 237 SAEN 240


>gi|315028235|gb|EFT40167.1| polyribonucleotide nucleotidyltransferase [Enterococcus faecalis
           TX4000]
          Length = 704

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 89/240 (37%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  L+  T     E ++   +     
Sbjct: 318 IRPDGRKLDEIRHLSSEVSILPRVHGSGLFTRGQTQALSVCTLAPLGEHQIIDGLGVQDS 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL  ++         I +  
Sbjct: 378 KRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQIIPSEEDFPYTIRLVA 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICSGTLALMDAGV-------------PIKAPVAGIAMGLVSDGENYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      L+ AK    ++++
Sbjct: 481 ILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTEALDQAKKARMEILE 539



 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 92/232 (39%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLP 67
           R + +    ++K A G+ LV++GDT +L    A+ E K V  +     +       G +P
Sbjct: 14  RPLEVEIGQLAKQANGAVLVRYGDTVVLSAAVASKEAKDVDFFPLTVNYEEKMYAVGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   R+    R+I R +R +         QI      ++ D     
Sbjct: 74  ---GGFIKRE---GRPSERATLTARLIDRPIRPMFSEGFRNEVQITNIVMSVEQDCTPEM 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  +++    +    D+
Sbjct: 128 AAMFGSSLALA-------------ISDIPFDGPIAGVDVGRINGEYVLNPTVEQAEQTDI 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    D I +L+  Q+++++
Sbjct: 175 ELTVAGTKEA-INMVESGAKE--VSEEDMLGALLFGFDAIKELVAFQEEIVA 223


>gi|251791031|ref|YP_003005752.1| polynucleotide phosphorylase/polyadenylase [Dickeya zeae Ech1591]
 gi|247539652|gb|ACT08273.1| Polyribonucleotide nucleotidyltransferase [Dickeya zeae Ech1591]
          Length = 706

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 97/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQTIDELTGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 375 RFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKPEAFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     Y +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYVV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G +  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISTP 544



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 70/212 (33%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   +  + A  + +V   DT +  T       +     +     +   T   G +P 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLTVNYQERTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 75  --GGFFRRE---GRPSEGETLISRLIDRPIRPLFPDGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E  T  +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTTEELKTSRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T+ G ++ V+  +E    S+D     +
Sbjct: 177 LVVAGTE-GAVLMVE--SEADLLSEDQMLGAV 205


>gi|237738330|ref|ZP_04568811.1| polyribonucleotide nucleotidyltransferase [Fusobacterium mortiferum
           ATCC 9817]
 gi|229420210|gb|EEO35257.1| polyribonucleotide nucleotidyltransferase [Fusobacterium mortiferum
           ATCC 9817]
          Length = 699

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 92/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
           R+ GR+  ++R +           GS +   G+T  +   TL  K    + +      + 
Sbjct: 324 RVDGRKTTEIRPLFAEVNCLPIPHGSAMFTRGETQAVVITTLGTKEDEQLVDDLEKEYYK 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RAL+ V+         I +  +
Sbjct: 384 KFYLHYNFPPYSVGETGRMGSPGRRELGHGS----LAERALKYVIPSEEEFPYTIRVVSE 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A+I G  ++L                   +K HVA I+ G++        
Sbjct: 440 ITESNGSSSQASICGGSLSLMAAGV-------------PIKEHVAGIAMGLIKEGDEFTV 486

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     L  A D   ++++L
Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTKNG-ITALQMDIKITGITEEIMRIALKQALDARNEILEL 545

Query: 234 QKDVI 238
             + I
Sbjct: 546 MNNTI 550



 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 85/248 (34%), Gaps = 33/248 (13%)

Query: 4   SGRQEN-QM--REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM-----WIRNT 54
             R+   ++  R ++ +   +++ + G+ +V++GDT LL+T     K P      +    
Sbjct: 3   DERKVQMELAGRTLTFSTGKIARQSCGAVMVQYGDTVLLSTVN-RSKEPRKENDFFPLTV 61

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
            +       G  P   G   KRE   G+    +    R+I R +R +          I+ 
Sbjct: 62  DYIEKFYAAGKFP---GGFNKRE---GKPSTNATLTARLIDRPIRPMFPDGFNYDVHIVN 115

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
                          I G+ +AL                     G VA +  G   G  I
Sbjct: 116 TVFSFDEKNTPDYLGIIGSSMAL-------------MLSDLPFLGPVAGVVIGYKNGEFI 162

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           ++    E  T +++ +   T    I  V+  A      ++     +  A + I  +   Q
Sbjct: 163 LNPTPEELETSELELSVAGTREA-INMVEAGANE--LDEETMLKAIMFAHENIKKICDFQ 219

Query: 235 KDVISNEV 242
            +  + EV
Sbjct: 220 -EAFAKEV 226


>gi|217972320|ref|YP_002357071.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica
           OS223]
 gi|254782734|sp|B8E6N7|PNP_SHEB2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|217497455|gb|ACK45648.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
           OS223]
          Length = 699

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 92/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+ + +R +S+   V     GS L   G+T  L T TL  +        I   +  
Sbjct: 314 RIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      ++  R + +V+  +A     + +  +
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPSAAEFPYSVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     L  A      ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMDIALQQAYGARVHILNV 535

Query: 234 QKDVISNE 241
               I + 
Sbjct: 536 MDQAIGSH 543



 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 67/208 (32%), Gaps = 27/208 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A+ + L   GDT +L T   +++       +     +   T   G +P 
Sbjct: 15  VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTVNYQEKTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+II    +         
Sbjct: 74  --GGFFKRE---GRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++            
Sbjct: 129 SMIGTSAALAISGI-------------PFSGPLGAARVGYIDGEYVLNPSVA--QLATSQ 173

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHF 216
            N V+  +   V +  S E     ++  
Sbjct: 174 LNLVVAGTAGAVLMVES-EAQALPEEVM 200


>gi|313115448|ref|ZP_07800916.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622242|gb|EFQ05729.1| polyribonucleotide nucleotidyltransferase [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 716

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 87/243 (35%), Gaps = 30/243 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  N++R ++    +     GS +   G T +LTT TL       + +      T 
Sbjct: 322 RVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTK 381

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G            G R      +  RAL  V+         I    +
Sbjct: 382 RYIHHYNFPPYSVGEAR----APRSPGRREIGHGALAERALVPVLPSLEEFPYTIRCVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           V+ ++G T  A+I G+ +AL D                 +K  VA ISCG++        
Sbjct: 438 VLSSNGSTSQASICGSTLALMDAGV-------------PIKAPVAGISCGLITEGDRWMT 484

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IAD 229
           ++D+   ED   D+D     T  G I  +Q   +    + D         +      + +
Sbjct: 485 MLDIQGVEDFHGDMDFKVGGTRKG-ITAIQMDIKIDGLTYDIIAEAFEKCRKGRLYILDE 543

Query: 230 LIK 232
           +IK
Sbjct: 544 IIK 546



 Score = 95.5 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 78/237 (32%), Gaps = 31/237 (13%)

Query: 12  REISLTRRV---SKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYG 64
           R   +          A  S ++++G+T +L          E V  +  N ++       G
Sbjct: 25  RPFKVEMGKMCGLSNA--SAMIRYGETCVLCNVVMSPKPREGVDFFPLNVEYEEKLYAAG 82

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+ ++RE   GR G R+    R++ R +R +          I +    +  D  
Sbjct: 83  RIP---GSFMRRE---GRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDPDCS 136

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
              A + GA +                       G +  +  G++ G  +++    +   
Sbjct: 137 PEIAGMIGASLVTA-------------VSDIPWNGPIGGVQVGLVDGEIVLNPTQEQRKV 183

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
            D+      T    IV ++  A      +D     +  A   I   I+    +++  
Sbjct: 184 SDLALTVAAT-MDKIVMIEAGANE--VDEDTMLNAIKAAHVEIKKTIEFINRIVAER 237


>gi|288940255|ref|YP_003442495.1| polyribonucleotide nucleotidyltransferase [Allochromatium vinosum
           DSM 180]
 gi|288895627|gb|ADC61463.1| polyribonucleotide nucleotidyltransferase [Allochromatium vinosum
           DSM 180]
          Length = 699

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 91/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I++   V     GS L   G+T  +   TL  +    I +   G    
Sbjct: 318 RIDGRDTKTVRPITIRTGVLPRTHGSALFTRGETQAMVITTLGTERDSQIIDALEGERRE 377

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G   +  +   R+ G      R+  R + +V+         + +  +
Sbjct: 378 HFMLHYNFPPFCVGEIGRVGSPKRREIGHG----RLAKRGVLAVMPSIEEFPYSVRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ G  +AL D                 +K  VA ++ G++  G     
Sbjct: 434 ITESNGSSSMASVCGTSLALMDAGV-------------PIKAPVAGVAMGLIKEGERFAV 480

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     L  AK+    ++  
Sbjct: 481 LTDIMGDEDHLGDMDFKVAGTADG-INALQMDIKIEGITREIMEIALAQAKEGRLHILGE 539

Query: 234 QKDVISNE 241
              VI + 
Sbjct: 540 MNKVIDSH 547



 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 70/228 (30%), Gaps = 26/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           + L    +++ A+G+ LV                            +T EY     + G 
Sbjct: 17  VRLETGEIARQADGAVLVNM---DDTVVLVTVVVDKRPGAERDFLPLTVEYQEKTYAAGR 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 +RE   GR         R+I R +R +         QII     +         
Sbjct: 74  IPGGFFRRE---GRPSEGEILTARLIDRPIRPLFVEGFCNEVQIIATVKSLN-------P 123

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+     AL      +   +          G +AA   G   G  I++         D D
Sbjct: 124 AVNPEVPAL------IGASAALALSGAPFNGPIAAARVGYKNGEYILNPALT-GLNPDSD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            + V+  +   V +  S E    S++     +    +++  +I+  ++
Sbjct: 177 LDLVVAGTDKAVLMVES-EARGLSEEIMLGAVLFGHEQMQVVIQAIRE 223


>gi|225011625|ref|ZP_03702063.1| Polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium
           MS024-2A]
 gi|225004128|gb|EEG42100.1| Polyribonucleotide nucleotidyltransferase [Flavobacteria bacterium
           MS024-2A]
          Length = 709

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 85/245 (34%), Gaps = 20/245 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +RL GR+   +R I           GS L   G+T  L T TL    E  +     +   
Sbjct: 317 IRLDGRKTTDIRPIWCEVDYLPSTHGSALFTRGETQALATTTLGTSREANMIDSPSHQGE 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P  TG        S R+ G       +  RAL+ V+         + I  
Sbjct: 377 ETFYLHYNFPPFCTGEARPLRGTSRREVGHG----NLAQRALKKVMPDD--CPYTVRIVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G +  A +    +AL D    ++   +   +  +  G   A+         + D
Sbjct: 431 EVLESNGSSSMATVCAGTMALMDAGVKIKKPVSGIAMGLITDGDRFAV---------LSD 481

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I   Q   +      D     LN A+D    ++    +
Sbjct: 482 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKIKGLRFDIMTQALNQARDGRLHILDHLIE 540

Query: 237 VISNE 241
            I+  
Sbjct: 541 TIATP 545



 Score = 79.4 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 84/240 (35%), Gaps = 27/240 (11%)

Query: 7   QENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAE 62
           +    R I++      K A+GS +V+ GD  LL TA    K   V        +    A 
Sbjct: 11  RFEDGRTITIETGKLAKQADGSVVVRMGDCMLLATAVSARKASPVDFLPLTVDYREKFAA 70

Query: 63  YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
            G  P   G   KREA   R         R++ R LR +         Q++I   ++  D
Sbjct: 71  AGRFP---GGFFKREA---RPSDNEVLTMRLVDRVLRPLFPKDYHAETQVMI--QLMSHD 122

Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
                         + D L  +   +         +  ++ +    + G  IV+    + 
Sbjct: 123 ENV-----------MPDALAGLAASTAIQLSDIPFEYPISEVRVARVDGMFIVNPSREQL 171

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
              D+D   +   +  +  V+G  E    S++     ++   + I D IK Q   ++  V
Sbjct: 172 DASDIDI-MIGASADSVAMVEG--EFDEISEEEMLDAISFGHEAIKDQIKAQ-IALAEAV 227


>gi|326568253|gb|EGE18335.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           BC8]
          Length = 695

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKHG 57
           R+ GR    +R + +   V  Y  GS L   G+T  L   TL     V +   +  TK  
Sbjct: 317 RIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLGTTRDVNLVDTLAGTKQD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +  A   R+ G      R+  R +++++  +      I +  +
Sbjct: 377 HFMLHYNFPHYSVGETGREGAPKRREIGHG----RLARRGVQAMLPAAERFPYTIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA ++L D                 LK  VA I+ G++  G     
Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G I  +Q   +    + D     L  A      ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGSVNG-ITALQMDIKIEGITADIMEQALKQAHAGRIHILNA 538

Query: 234 QKDVISN 240
             +VI+ 
Sbjct: 539 MNEVIAT 545



 Score = 64.7 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 66/214 (30%), Gaps = 30/214 (14%)

Query: 13  EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           ++ L          S LV  G              P  I       +T  Y     ++G 
Sbjct: 15  QVVLETGRIARQANSVLVHMGGVS---VLVAVVVRPEAIAGQNFFPLTVNYQEKMYASG- 70

Query: 73  RVKREAVSGRQGGRSQEI----QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126
             K     G++ GR+ E      R+I R +R +          I +   VI +D      
Sbjct: 71  --KIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNE--IQVTATVISSDKTQDAD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA  AL                     G + A   G + G  +++    E    D
Sbjct: 127 IAAMIGASAALA-------------ISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSD 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +D     T S  ++     +E    S+D     +
Sbjct: 174 LDLVVAGTKSAVLMV---ESEAKELSEDQMLGAV 204


>gi|325915559|ref|ZP_08177870.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Xanthomonas vesicatoria ATCC 35937]
 gi|325538275|gb|EGD09960.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Xanthomonas vesicatoria ATCC 35937]
          Length = 704

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR  + +R IS    V     GS L   G+T  +   TL       + +   G   
Sbjct: 315 VRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAVSGEYK 374

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  A   R+ G      R+  R + +V+         I +  
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHG----RLAKRGVLAVMPSLEEFPYTIRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PIKAPVAGIAMGLVKEGNDFV 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  AK     ++ 
Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILG 536

Query: 233 LQKDVISNE 241
                ++  
Sbjct: 537 EMAHALTTP 545



 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 69/192 (35%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ +VKF DT LL TA    +  E    +     +       G +P 
Sbjct: 15  VTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +   I R+I R +R +         QII     +  D     A
Sbjct: 74  --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G +AA   G   G  I++    E     ++
Sbjct: 129 ALIGASAALSLAGT-------------PFNGPIAAAKVGYKNGEYILNPTVTELKDSQLE 175

Query: 189 ANFVMTDSGHIV 200
                T +  ++
Sbjct: 176 LVVAGTANAVLM 187


>gi|307129389|ref|YP_003881405.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii 3937]
 gi|306526918|gb|ADM96848.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii 3937]
          Length = 706

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 97/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDELIGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 375 RFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKPEAFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     Y +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYVV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G +  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISTP 544



 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 70/212 (33%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   +  + A  + +V   DT +  T       +     +     +   T   G +P 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLTVNYQERTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR         R+I R +R +     +   Q+I     +         
Sbjct: 75  --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E  T  +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTTEELKTSRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T+ G ++ V+  +E    S+D     +
Sbjct: 177 LVVAGTE-GAVLMVE--SEADLLSEDQMLGAV 205


>gi|301756464|ref|XP_002914081.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Ailuropoda melanoleuca]
          Length = 784

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 19/249 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R I+    + K   GS L + G T +L T T +        +++   I  
Sbjct: 358 RCDGRDLTSLRNINCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSMKSDQIITAING 417

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   V+ R+ G       +  +AL  V+         + 
Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHG----ALAEKALYPVIPKDF--PFTVR 471

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  V K +      G +  Y 
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKNNP---DKGEIEDYR 528

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T  G I  +Q   +            +  A     ++I+
Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTTKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEIIQ 587

Query: 233 LQKDVISNE 241
           +    IS  
Sbjct: 588 IMNKTISKP 596



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 81/203 (39%), Gaps = 27/203 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R++ ++     ++A+GS +V+ GDT ++ TA   T             +    A  G +P
Sbjct: 54  RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
               N ++RE  S     +     R+I R++R +         Q++  C+++  DG    
Sbjct: 114 ---TNYLRREIGS---SDKEILTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNEP 165

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI GA VAL                     G + A+  GM+ G  +V+    E S+ 
Sbjct: 166 DVLAINGASVALS-------------LSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSS 212

Query: 186 DVDANFVMTDSGHIVEVQGSAER 208
            ++          IV ++ SAE 
Sbjct: 213 TLNLVVAGAPKSQIVMMEASAEN 235


>gi|160876518|ref|YP_001555834.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica
           OS195]
 gi|304410260|ref|ZP_07391879.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica
           OS183]
 gi|307302029|ref|ZP_07581787.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica
           BA175]
 gi|187611316|sp|A3D7K1|PNP_SHEB5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037315|sp|A9KZW6|PNP_SHEB9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|160862040|gb|ABX50574.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
           OS195]
 gi|304351669|gb|EFM16068.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica
           OS183]
 gi|306914067|gb|EFN44488.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica
           BA175]
 gi|315268712|gb|ADT95565.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica
           OS678]
          Length = 700

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 92/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+ + +R +S+   V     GS L   G+T  L T TL  +        I   +  
Sbjct: 314 RIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      ++  R + +V+  +A     + +  +
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPSAAEFPYSVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     L  A      ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMDIALQQAYGARVHILNV 535

Query: 234 QKDVISNE 241
               I + 
Sbjct: 536 MDQAIGSH 543



 Score = 71.7 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 67/208 (32%), Gaps = 27/208 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A+ + L   GDT +L T   +++       +     +   T   G +P 
Sbjct: 15  VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTVNYQEKTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+II    +         
Sbjct: 74  --GGFFKRE---GRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++            
Sbjct: 129 SMIGTSAALAISGI-------------PFSGPLGAARVGYIDGEYVLNPSVA--QLATSQ 173

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHF 216
            N V+  +   V +  S E     ++  
Sbjct: 174 LNLVVAGTAGAVLMVES-EAQALPEEVM 200


>gi|316931583|ref|YP_004106565.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris DX-1]
 gi|315599297|gb|ADU41832.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris DX-1]
          Length = 722

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 89/241 (36%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I     V   A GS L   G+T  L   TL         ++  G    
Sbjct: 316 RIDGRDSKTVRSILAQAGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYVDSLAGTYKE 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      ++  RA+  V+         I +  +
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHG----KLAWRAIHPVLPPHHEFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    ++  +    +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   +    +++     L  AKD    ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTEQG-ITSLQMDIKIGGITEEIMKVALGQAKDGRIHILGEMSKA 541

Query: 238 I 238
           +
Sbjct: 542 L 542



 Score = 88.2 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 84/254 (33%), Gaps = 45/254 (17%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + L    V++ A+G+ +  +G+T +L T        E V        +       G +
Sbjct: 14  RPLKLETGKVARQADGAVVATYGETVVLATVVAAKAPREGVDFLPLTVDYQEKAYAAGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +   + R+I R +R +         Q+I+       +    
Sbjct: 74  P---GGYFKRE---GRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                    +G + A   G +    +++     D   +
Sbjct: 128 VLAMVAASAALTLSGA-------------PFRGPIGAARVGFINDEYVLNP--VLDEMAE 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHF---------------FAMLNLAKDRIA--- 228
                V+  +   V +  S E    S++                  A++ LA+       
Sbjct: 173 TQLELVVAGTADAVLMVES-EAKELSEEIMLGAVMFGHRHFQPVIDAIIELAEKAAKEPR 231

Query: 229 DLIKLQKDVISNEV 242
           +LI++    I  E+
Sbjct: 232 ELIEIDNAAIEKEM 245


>gi|327264085|ref|XP_003216847.1| PREDICTED: exosome complex exonuclease RRP43-like [Anolis
           carolinensis]
          Length = 277

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 88/256 (34%), Gaps = 24/256 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   + R  ++       A+GS LVK G+T ++     E   P+   ++  G+I  
Sbjct: 25  RPDGRDLGEFRTTTINIGSITTADGSALVKLGNTTVVCGIKAEFAAPL-ADSSNKGYIVP 83

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115
              + P  +          G  G  +Q   + +   +    VV    L    G    ++ 
Sbjct: 84  NVDLPPLCSS-----RFRPGPPGEEAQAASQFVADVIENSQVVMKEDLCIVDGKIAWVLY 138

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
           CD+  +  DG    A +     AL +             + + + K ++   ++    A 
Sbjct: 139 CDIICLDYDGNLLDACMCAFLAALRNVQLPAVTINEETGLAEVNLKEKIPLTIRKEPVAT 198

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           S  +     IVD    E+         V  + G +  V      +  +       ++ A 
Sbjct: 199 SFILFDTVMIVDPTAEEEDLATGMLTIVTDEEGKLCSVHKPG-GSALTGAKLQDCISRAT 257

Query: 225 DRIADLIKLQKDVISN 240
            R  ++ KL   VI +
Sbjct: 258 ARYKEVKKLIDKVIKS 273


>gi|257784591|ref|YP_003179808.1| Polyribonucleotide nucleotidyltransferase [Atopobium parvulum DSM
           20469]
 gi|257473098|gb|ACV51217.1| Polyribonucleotide nucleotidyltransferase [Atopobium parvulum DSM
           20469]
          Length = 732

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 83/233 (35%), Gaps = 26/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMW--IRNTKHG 57
           R+ GR  N++R I +         GS L + G T +L   T  +  +      I      
Sbjct: 319 RVDGRVANEIRPIMVKPDYLPLVHGSGLFQRGQTQVLSICTLGMLNEWQRLDTIEPMDGK 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P  TG   +  +   R+ G       +  RAL  V+         I +  +
Sbjct: 379 RYIHHYNFPPFCTGETGRMGSPKRREIGHG----ALAERALLPVIPSEEEFPYTIRVVSE 434

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           V++++G +  A+  G+ ++L D                 LK  V+ ++ G++        
Sbjct: 435 VMESNGSSSMASTCGSTLSLMDAGV-------------PLKRPVSGVAMGLIQENGKTVV 481

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           + D+   ED   D+D     T  G I  +Q   +    + +     L  A + 
Sbjct: 482 LTDIQGLEDFLGDMDFKVCGTTKG-ITAMQMDNKATGLTPEILRNALMQAHEG 533



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 80/224 (35%), Gaps = 27/224 (12%)

Query: 22  KYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78
           K A G+C+VK GD+ +L     + E K    +             G +P   G  +KREA
Sbjct: 24  KQATGACIVKCGDSTVLLTAVVSKERKDYDFFPLTVDFIEKMYAVGRVP---GGYLKREA 80

Query: 79  VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138
              R   ++    RMI R LR           QI+    V        T ++ GA  AL 
Sbjct: 81  ---RPSEKATLTARMIDRPLRPSFPEGFRNEVQIVATSLVADQVNAVDTISVMGASAALA 137

Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCG--MLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
                              +G +A +  G     G  +V+  Y E    D+D    +  S
Sbjct: 138 -------------VGGVPFEGPLACVRIGRNADTGEFLVNPTYEERDHSDLDLE--LGGS 182

Query: 197 GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
              + +   A     S++   + +   ++ IA   + QK  I+ 
Sbjct: 183 STFISM-LEAGADEISEEDMLSAMAFGQEAIAAFCEEQKKFIAK 225


>gi|326564308|gb|EGE14538.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           103P14B1]
 gi|326574715|gb|EGE24651.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           101P30B1]
          Length = 695

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKHG 57
           R+ GR    +R + +   V  Y  GS L   G+T  L   TL     V +   +  TK  
Sbjct: 317 RIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLGTTRDVNLVDTLAGTKQD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +  A   R+ G      R+  R +++++  +      I +  +
Sbjct: 377 HFMLHYNFPHYSVGETGREGAPKRREIGHG----RLARRGVQAMLPAAERFPYTIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA ++L D                 LK  VA I+ G++  G     
Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G I  +Q   +    + D     L  A      ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGSVNG-ITALQMDIKIEGITADIMEQALKQAHAGRIHILNA 538

Query: 234 QKDVISN 240
             +VI+ 
Sbjct: 539 MNEVIAT 545



 Score = 64.7 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 66/214 (30%), Gaps = 30/214 (14%)

Query: 13  EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           ++ L          S LV  G              P  I       +T  Y     ++G 
Sbjct: 15  QVVLETGRIARQANSVLVHMGGVS---VLVAVVVRPEAIAGQNFFPLTVNYQEKMYASG- 70

Query: 73  RVKREAVSGRQGGRSQEI----QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126
             K     G++ GR+ E      R+I R +R +          I +   VI +D      
Sbjct: 71  --KIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNE--IQVTATVISSDKTQDAD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA  AL                     G + A   G + G  +++    E    D
Sbjct: 127 IAAMIGASAALA-------------ISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSD 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +D     T S  ++     +E    S+D     +
Sbjct: 174 LDLVVAGTKSAVLMV---ESEAKELSEDQMLGAV 204


>gi|169634530|ref|YP_001708266.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           SDF]
 gi|226702588|sp|B0VLR7|PNP_ACIBS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169153322|emb|CAP02433.1| polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Acinetobacter baumannii]
          Length = 697

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 94/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR    +R + +   V + A GS L   G+T  L T TL       +      TK  
Sbjct: 317 RIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +      R+ G      R+  R +++V+  +      I I  D
Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA ++L D                 LK  VA I+ G++  G     
Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G I  +Q   +    +++     LN A      ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNE 538

Query: 234 QKDVIS 239
              VIS
Sbjct: 539 MNKVIS 544



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 35/172 (20%)

Query: 77  EAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDC----DVIQADGGTRTA 128
               G++ GR+ E      R+I R +R +         Q+          ++AD     A
Sbjct: 75  PGGYGKREGRASEAETLTSRLIDRPIRPLFPEGYYNEIQVTATVVSSDKTMEAD----IA 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G   AL                    +G + A   G++ G  +++ ++ + +  D+D
Sbjct: 131 AMLGTSAALAIAGT-------------PFRGPIGAARVGLINGEYVLNPNFEQMAQSDLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233
                T+S  ++     +E    S+D            + +A   I +    
Sbjct: 178 LVVAGTESAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAIQAINEFAAA 226


>gi|326570032|gb|EGE20078.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           BC7]
          Length = 696

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKHG 57
           R+ GR    +R + +   V  Y  GS L   G+T  L   TL     V +   +  TK  
Sbjct: 317 RIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLGTTRDVNLVDTLAGTKQD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +  A   R+ G      R+  R +++++  +      I +  +
Sbjct: 377 HFMLHYNFPHYSVGETGREGAPKRREIGHG----RLARRGVQAMLPAAERFPYTIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA ++L D                 LK  VA I+ G++  G     
Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G I  +Q   +    + D     L  A      ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGSVNG-ITALQMDIKIEGITADIMEQALKQAHAGRIHILNA 538

Query: 234 QKDVISN 240
             +VI+ 
Sbjct: 539 MNEVIAT 545



 Score = 64.7 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 66/214 (30%), Gaps = 30/214 (14%)

Query: 13  EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           ++ L          S LV  G              P  I       +T  Y     ++G 
Sbjct: 15  QVVLETGRIARQANSVLVHMGGVS---VLVAVVVRPEAIAGQNFFPLTVNYQEKMYASG- 70

Query: 73  RVKREAVSGRQGGRSQEI----QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126
             K     G++ GR+ E      R+I R +R +          I +   VI +D      
Sbjct: 71  --KIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNE--IQVTATVISSDKTQDAD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA  AL                     G + A   G + G  +++    E    D
Sbjct: 127 IAAMIGASAALA-------------ISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSD 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +D     T S  ++     +E    S+D     +
Sbjct: 174 LDLVVAGTKSAVLMV---ESEAKELSEDQMLGAV 204


>gi|326559316|gb|EGE09743.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           7169]
 gi|326569953|gb|EGE20000.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           BC1]
 gi|326572889|gb|EGE22874.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           CO72]
 gi|326573663|gb|EGE23621.1| polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis
           O35E]
          Length = 695

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKHG 57
           R+ GR    +R + +   V  Y  GS L   G+T  L   TL     V +   +  TK  
Sbjct: 317 RIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLGTTRDVNLVDTLAGTKQD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +  A   R+ G      R+  R +++++  +      I +  +
Sbjct: 377 HFMLHYNFPHYSVGETGREGAPKRREIGHG----RLARRGVQAMLPAAERFPYTIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA ++L D                 LK  VA I+ G++  G     
Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G I  +Q   +    + D     L  A      ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGSVNG-ITALQMDIKIEGITADIMEQALKQAHAGRIHILNA 538

Query: 234 QKDVISN 240
             +VI+ 
Sbjct: 539 MNEVIAT 545



 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 66/214 (30%), Gaps = 30/214 (14%)

Query: 13  EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           ++ L          S LV  G              P  I       +T  Y     ++G 
Sbjct: 15  QVVLETGRIARQANSVLVHMGGVS---VLVAVVVRPEAIAGQNFFPLTVNYQEKMYASG- 70

Query: 73  RVKREAVSGRQGGRSQEI----QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126
             K     G++ GR+ E      R+I R +R +          I +   VI +D      
Sbjct: 71  --KIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNE--IQVTATVISSDKTQDAD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA  AL                     G + A   G + G  +++    E    D
Sbjct: 127 IAAMIGASAALA-------------ISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSD 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +D     T S  ++     +E    S+D     +
Sbjct: 174 LDLVVAGTKSAVLMV---ESEAKELSEDQMLGAV 204


>gi|167763705|ref|ZP_02435832.1| hypothetical protein BACSTE_02083 [Bacteroides stercoris ATCC
           43183]
 gi|167697821|gb|EDS14400.1| hypothetical protein BACSTE_02083 [Bacteroides stercoris ATCC
           43183]
          Length = 716

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR+  ++R I           GS +   G+T  L+T TL  K+   I +        
Sbjct: 319 RLDGRKTTEIRPIWCEIGYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +         + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNAGEEKY 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     L  AK+    ++
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILEKALLQAKEGREYIL 538

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 539 SKITECIAEP 548



 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 28/242 (11%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       I+L      K A+GS +++ G+T LL T    ++ VP            
Sbjct: 12  PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            ++    R  G   KRE   GR         R++ RALR +   +      + ++  +  
Sbjct: 66  EKFSAFGRFPGGFTKRE---GRASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIILFS 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           V + D L  +   +          G ++ +    + G  +++  + 
Sbjct: 121 ADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGEFVINPTFE 169

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +    D+D     T   +I+ V+G  E    S+      +  A + I    K Q + ++ 
Sbjct: 170 QLEKADMDLMVGATYE-NIMMVEG--EMDEVSERDLLEAMKAAHEAIKIQCKAQME-LAE 225

Query: 241 EV 242
           EV
Sbjct: 226 EV 227


>gi|153001784|ref|YP_001367465.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica
           OS185]
 gi|187611290|sp|A6WRG3|PNP_SHEB8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|151366402|gb|ABS09402.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
           OS185]
          Length = 700

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 92/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+ + +R +S+   V     GS L   G+T  L T TL  +        I   +  
Sbjct: 314 RIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      ++  R + +V+  +A     + +  +
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPSAAEFPYSVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     L  A      ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMDIALQQAYGARVHILNV 535

Query: 234 QKDVISNE 241
               I + 
Sbjct: 536 MDQAIGSH 543



 Score = 71.7 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 67/208 (32%), Gaps = 27/208 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A+ + L   GDT +L T   +++       +     +   T   G +P 
Sbjct: 15  VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTVNYQEKTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+II    +         
Sbjct: 74  --GGFFKRE---GRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++            
Sbjct: 129 SMIGTSAALAISGI-------------PFSGPLGAARVGYIDGEYVLNPSVA--QLATSQ 173

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHF 216
            N V+  +   V +  S E     ++  
Sbjct: 174 LNLVVAGTAGAVLMVES-EAQALPEEVM 200


>gi|302404108|ref|XP_002999892.1| exosome complex exonuclease RRP41 [Verticillium albo-atrum
           VaMs.102]
 gi|261361394|gb|EEY23822.1| exosome complex exonuclease RRP41 [Verticillium albo-atrum
           VaMs.102]
          Length = 155

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 7/144 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR---NTKHG 57
           +R+ GR+ N++R +    R    A+GS  ++ G T ++   T   +          +K  
Sbjct: 13  LRVDGRRWNELRRLQAQIRTQDAADGSSYLEIGHTKVMCVVTGPTEPQRRGPAGGQSKDA 72

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +     +   S+ +R K     GR   R  E++  + +A  S +         I I   
Sbjct: 73  AVNVSIVVAGFSSVDRRK----YGRNDKRISELEATVSKAFASTLHTHLFPHSSIYISLH 128

Query: 118 VIQADGGTRTAAITGAWVALHDCL 141
           V+  DG    A +    +AL D  
Sbjct: 129 VLSQDGSLLAALLNATTLALVDAG 152


>gi|255693073|ref|ZP_05416748.1| polyribonucleotide nucleotidyltransferase [Bacteroides finegoldii
           DSM 17565]
 gi|260621113|gb|EEX43984.1| polyribonucleotide nucleotidyltransferase [Bacteroides finegoldii
           DSM 17565]
          Length = 708

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 90/250 (36%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR+  ++R I           GS +   G+T  LT+ TL  K+   I +        
Sbjct: 319 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKMDEKIIDDVLEHGKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +         + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNPGEEKY 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     LN AK+    ++
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHIL 538

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 539 NKITETIAEP 548



 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHGWITAEYGML 66
           R I+L      K A+GS +++ G+T LL T    ++ VP         ++    A +G  
Sbjct: 15  RTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYKEKFAAFGRF 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR         R++ RALR +   +     ++ ++  +  ADG   
Sbjct: 75  P---GGFTKRE---GRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNIILFSADG--- 123

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                   V + D L  +   +          G ++ +    + G  +++  + +    D
Sbjct: 124 --------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFEQLEKAD 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T   +I+ V+G  E    S+      + +A + I    K Q +
Sbjct: 176 MDLMVAATYE-NIMMVEG--EMQEVSEAELLEAMKVAHEAIKIHCKAQME 222


>gi|146283626|ref|YP_001173779.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri
           A1501]
 gi|187611273|sp|A4VPN6|PNP_PSEU5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145571831|gb|ABP80937.1| polyribonucleotide nucleotidyltransferase [Pseudomonas stutzeri
           A1501]
          Length = 701

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 95/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 316 RIDGRDTRTVRPLAIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R   +GR   R     R+  R + +++  +      I +  +
Sbjct: 376 AFMLHYNFPPYSVGE-CGRMGATGR---REIGHGRLARRGVAAMLPSADEFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA +AL D    M             K  VA I+ G++  G     
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGLVKEGEKFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A +   +++  
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTAKG-VTALQMDIKIQGITEEIMEIALGQALEARLNILGQ 537

Query: 234 QKDVISN 240
              VI+ 
Sbjct: 538 MSQVIAQ 544



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
           ++L    +++ A G+ LV   D   +L T    +        +  +  +   T   G +P
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKTADPSKGFFPLSVHYQEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KREA   R   +     R+I R +R +         Q+I              
Sbjct: 75  ---GGFFKREA---RPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVSTSKKTDPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
           AA+ G   AL                     G + A           +++ +Y +     
Sbjct: 129 AAMIGTSAALAVSGI-------------PFDGPIGAARVAFHPETGYLLNPNYEQLKASS 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T    ++     +E    ++D     +  A D    +IK  ++
Sbjct: 176 LDMVVAGTKDAVLMV---ESEAKELTEDQMLGAVLFAHDEFQAVIKAVEE 222


>gi|319779764|ref|YP_004139240.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317165652|gb|ADV09190.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 715

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 88/241 (36%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R+I     V     GS L   G+T  L  ATL         ++  G    
Sbjct: 317 RIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQYVDSLTGMYKE 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++  +      + +  +
Sbjct: 377 KFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPSADQFPYTLRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  + +G   A+         + D+
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFAV---------LSDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T +G I  +Q   +    +++     L+ AKD    ++      
Sbjct: 484 LGDEDHLGDMDFKVAGTANG-ITSLQMDIKIEGITEEIMKIALDQAKDGRQHILGEMAHA 542

Query: 238 I 238
           +
Sbjct: 543 L 543



 Score = 85.5 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 31/229 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTT-ATLEEKVP---MWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ L  +G+T +L T  +++E  P    +     +   T   G +
Sbjct: 14  RPLILETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR   +   + R+I R +R +         QI++   V+Q D    
Sbjct: 74  P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFASGYKNDTQIVVT--VVQHDLEND 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               +I     AL                     G V     G + G  +++    E   
Sbjct: 126 PDILSIVATSAAL-------------TLSGVPFMGPVGGARVGYINGEYVLNPHVDEMQE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
             +D     T    ++     +E     ++     +         +I  
Sbjct: 173 SKLDLVVAGTADAVLMV---ESEAKELGEELMLGAVMFGHKGFQPVIDA 218


>gi|317493630|ref|ZP_07952051.1| polyribonucleotide nucleotidyltransferase [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918573|gb|EFV39911.1| polyribonucleotide nucleotidyltransferase [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 704

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 95/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDGLTGEQTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 375 RFLLHYNFPPYSVGETGMMGSPKRREIGHG----RLAKRGVLAVMPKQDEFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDENFVV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVIS 239
            +  I+
Sbjct: 537 MEQAIN 542



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 79/233 (33%), Gaps = 28/233 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   +  + A  + +V   DT +  T       +E    +     +   T   G  P 
Sbjct: 16  VTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAKEGQSFFPLTVNYQERTYAAGRFP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR G     I R+I R +R +     L   Q++     +         
Sbjct: 75  --GGFFRRE---GRPGEGETLIARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQVSPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTTDELQESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
                T+ G ++ V+  +E    S+D     +    ++   +I+  K  ++ E
Sbjct: 177 LVVAGTE-GAVLMVE--SEAQLLSEDQMLGAVVFGHEQQQVVIENIK-ALAAE 225


>gi|226951862|ref|ZP_03822326.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ATCC
           27244]
 gi|294649119|ref|ZP_06726561.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226837402|gb|EEH69785.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ATCC
           27244]
 gi|292825002|gb|EFF83763.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 714

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 93/246 (37%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L T TL       +      TK  
Sbjct: 334 RIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 393

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +      R+ G      R+  R +++V+  +      I I  D
Sbjct: 394 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 449

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA ++L D                 LK  VA I+ G++  G     
Sbjct: 450 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 496

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G I  +Q   +    +++     LN A      ++  
Sbjct: 497 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNE 555

Query: 234 QKDVIS 239
              VIS
Sbjct: 556 MNKVIS 561



 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 78/237 (32%), Gaps = 43/237 (18%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           ++ L    V++ A  + LV  G   +L         P          +T  Y     + G
Sbjct: 34  QVVLETGRVARQAN-TVLVTMGGVTVLVAVV---AQPKAKAGQDFFPLTVNYQEKQYAAG 89

Query: 72  NRVKREAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDC----DVIQADG 123
              +     G++ GR+ E    I R+I R +R +         Q+          + AD 
Sbjct: 90  ---RIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSSDKTMDAD- 145

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
               AA+ G   AL                    +G +     G++ G  +++ ++ + +
Sbjct: 146 ---IAAMLGTSAALSIAGT-------------PFRGPIGGARVGLINGEYVLNPNFEQLA 189

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233
             D+D     T+S  ++     +E    S+D            + +A   I +    
Sbjct: 190 QSDLDLVVAGTESAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAA 243


>gi|156039812|ref|XP_001587013.1| hypothetical protein SS1G_12042 [Sclerotinia sclerotiorum 1980]
 gi|154696099|gb|EDN95837.1| hypothetical protein SS1G_12042 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 261

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 86/250 (34%), Gaps = 20/250 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           +RL GR+ N++R ++        ++GS  +  G+T +L T T     P  +R+   G   
Sbjct: 13  LRLDGRRWNELRRVTAQISTQPASDGSSYLSMGNTQVLCTVTGP-CDPSKLRSIGGGGNS 71

Query: 58  ------WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
                  +  E      +  +R K     GR   R QE+   +       +  +   +  
Sbjct: 72  NAGEKAEVRVEISFAGFAGVDRKK----YGRNDKRIQELSNTLSTTFTPHLLTTLTSNST 127

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
           I++   ++  DG   +A I  + +AL D    M              G  ++ S      
Sbjct: 128 ILLSLHILSLDGSLLSALINASTLALIDAGIPMPSYICACTA-----GSTSSYSSNDEKA 182

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
            P++DL+  E+  +           G    V                ML +  D    + 
Sbjct: 183 DPLLDLNLSEEQELPF-LTVATAGEGDGDGVVALVMETRVQAGRLEGMLAVGVDGCKQVR 241

Query: 232 KLQKDVISNE 241
           ++   VI + 
Sbjct: 242 EILDGVIRSR 251


>gi|257096721|sp|B2RIW6|PNP_PORG3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 743

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 89/244 (36%), Gaps = 24/244 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           RL GR+  ++R I +         GS +   G+T  LTT TL  K    + +    +   
Sbjct: 318 RLDGRKATEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVTLGTKSDEKLVDDVLNYTKE 377

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+ ++         + +  D
Sbjct: 378 RFLLHYNFPPFSTGEARPQRGVGRREIGHG----NLAHRALKRMIPTD--YPYVVRVISD 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176
           +++++G +  A +    +AL D    +    +   +          IS      Y I+ D
Sbjct: 432 ILESNGSSSMATVCAGTLALRDAGVQIRKPVSGIAMG--------LISENQGKNYAILSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIK 232
           +   ED   D+D     T  G I   Q   +    S +     L  AK      +  +++
Sbjct: 484 ILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILENALEQAKQGRLHILGKIME 542

Query: 233 LQKD 236
            Q +
Sbjct: 543 AQPE 546



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 81/227 (35%), Gaps = 21/227 (9%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWITAEYGMLPRS 69
           R I +      K A+G+  V  G+T LL T    ++  P             +Y  + R 
Sbjct: 15  RSIKIETGKLAKQADGAVTVTMGNTVLLATVCAAKDANPGCDFMPLQVEYKEKYSAIGRF 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   +RE   G+         R++ RALR +   +     ++ ++  +  ADG      
Sbjct: 75  PGGFTRRE---GKASDYEILTCRLVDRALRPLFPDN--YHAEVFVNVILFSADG------ 123

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
                  + D L  +   +          G ++ +    + G  IV+  + +    D+D 
Sbjct: 124 -----EDMPDALAGLAASAALAVSDIPFNGPISEVRVARVDGRYIVNPTFEQLERADIDL 178

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             V     +I+ V+G  E     +      + +A + I    K Q +
Sbjct: 179 -MVGATMDNIMMVEG--EMDEVQESEMLEGIRVAHEAIKVQCKAQLE 222


>gi|296113971|ref|YP_003627909.1| polyribonucleotide nucleotidyltransferase [Moraxella catarrhalis
           RH4]
 gi|295921665|gb|ADG62016.1| polyribonucleotide nucleotidyltransferase [Moraxella catarrhalis
           RH4]
          Length = 696

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPM--WIRNTKHG 57
           R+ GR    +R + +   V  Y  GS L   G+T  L   TL     V +   +  TK  
Sbjct: 317 RIDGRDLETVRALDIQVGVLPYTHGSALFTRGETQALVVTTLGTTRDVNLVDTLAGTKQD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +  A   R+ G      R+  R +++++  +      I +  +
Sbjct: 377 HFMLHYNFPHYSVGETGREGAPKRREIGHG----RLARRGVQAMLPAAERFPYTIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA ++L D                 LK  VA I+ G++  G     
Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G I  +Q   +    + D     L  A      ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGSVNG-ITALQMDIKIEGITADIMEQALKQAHAGRIHILNA 538

Query: 234 QKDVISN 240
             +VI+ 
Sbjct: 539 MNEVIAT 545



 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 66/214 (30%), Gaps = 30/214 (14%)

Query: 13  EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           ++ L          S LV  G              P  I       +T  Y     ++G 
Sbjct: 15  QVVLETGRIARQANSVLVHMGGVS---VLVAVVVRPEAIAGQNFFPLTVNYQEKMYASG- 70

Query: 73  RVKREAVSGRQGGRSQEI----QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126
             K     G++ GR+ E      R+I R +R +          I +   VI +D      
Sbjct: 71  --KIPGGYGKREGRASEFETLTSRLIDRPIRPLFPEGYFNE--IQVTATVISSDKTQDAD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA  AL                     G + A   G + G  +++    E    D
Sbjct: 127 IAAMIGASAALA-------------ISPAPFNGPIGAARVGFINGEYVLNPTLAEMKQSD 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +D     T S  ++     +E    S+D     +
Sbjct: 174 LDLVVAGTKSAVLMV---ESEAKELSEDQMLGAV 204


>gi|289665195|ref|ZP_06486776.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
           pv. vasculorum NCPPB702]
 gi|289667359|ref|ZP_06488434.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 704

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR  + +R IS    V     GS L   G+T  +   TL       + +   G   
Sbjct: 315 VRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAVSGEYK 374

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  A   R+ G      R+  R + +V+         I +  
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHG----RLAKRGVLAVMPSLEEFPYTIRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PIKAPVAGIAMGLVKEGNDFV 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  AK     ++ 
Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILG 536

Query: 233 LQKDVISNE 241
                ++  
Sbjct: 537 EMAHALTTP 545



 Score = 71.7 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 69/192 (35%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ +VKF DT LL TA    +  E    +     +       G +P 
Sbjct: 15  VTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +   I R+I R +R +         QII     +  D     A
Sbjct: 74  --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G +AA   G   G  I++    E     ++
Sbjct: 129 ALIGASAALSLAGT-------------PFNGPIAAAKVGYKNGEYILNPTVTELKDSQLE 175

Query: 189 ANFVMTDSGHIV 200
                T +  ++
Sbjct: 176 LVVAGTANAVLM 187


>gi|271499178|ref|YP_003332203.1| polyribonucleotide nucleotidyltransferase [Dickeya dadantii Ech586]
 gi|270342733|gb|ACZ75498.1| polyribonucleotide nucleotidyltransferase [Dickeya dadantii Ech586]
          Length = 706

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 97/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQTIDELTGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 375 RFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKPEAFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     Y +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGENYVV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G +  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISTP 544



 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 70/212 (33%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   +  + A  + +V   DT +  T       +     +     +   T   G +P 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLTVNYQERTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 75  --GGFFRRE---GRPSEGETLISRLIDRPIRPLFPDGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E  T  +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTTEELKTSRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T+ G ++ V+  +E    S+D     +
Sbjct: 177 LVVAGTE-GAVLMVE--SEADLLSEDQMLGAV 205


>gi|298387792|ref|ZP_06997342.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 1_1_14]
 gi|298259397|gb|EFI02271.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 1_1_14]
          Length = 708

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 91/250 (36%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           RL GR+  ++R I           GS +   G+T  LT+ T    L+EK+   +      
Sbjct: 319 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDNVLEHGKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +         + +  +
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNPGEEKY 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     LN AK+    ++
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHIL 538

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 539 DKITETIAEP 548



 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 34/245 (13%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHG 57
             GR       I+L      K A+GS +++ G+T LL T    ++ VP         ++ 
Sbjct: 12  PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
              A +G  P   G   KRE   GR         R++ RALR +   +     ++ ++  
Sbjct: 66  EKFAAFGRFP---GGFTKRE---GRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNII 117

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +  ADG           V + D L  +   +          G ++ +    + G  +++ 
Sbjct: 118 LFSADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINP 166

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            + +    D+D     T   +I+ V+G  E    S+      + +A + I    K Q + 
Sbjct: 167 TFDQLEKADMDLMVAATYD-NIMMVEG--EMHEVSEAELLEAMKVAHEAIKVHCKAQME- 222

Query: 238 ISNEV 242
           ++ EV
Sbjct: 223 LTEEV 227


>gi|145298048|ref|YP_001140889.1| polynucleotide phosphorylase/polyadenylase [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|187470962|sp|A4SJR9|PNP_AERS4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|142850820|gb|ABO89141.1| polyribonucleotide nucleotidyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 713

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 93/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R +S+   +   A GS L   G+T  +  ATL  +        +   +  
Sbjct: 314 RIDGRDPEMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTERDAQNIDELAGHRAD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+  +A     + +  +
Sbjct: 374 RFMLHYNFPPYCVGETGMMGSPKRREIGHG----RLAKRGVAAVMPSAAEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G+ +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEEEGFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     L  A+     ++K+
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTTQG-ITALQMDIKIEGITKEIMEIALKQARGARLHILKV 535

Query: 234 QKDVI 238
             + I
Sbjct: 536 MDEAI 540



 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 75/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +V   DT +  T       +     +     +   T   G +P 
Sbjct: 15  VTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTVNYQERTYAAGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR         R+I R +R +     L   Q++     +         
Sbjct: 74  --GGFFRRE---GRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVVATVMSVNPLVSPDIV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G +AA   G + G  +++    E    D+D
Sbjct: 129 AMIGASAALAISGI-------------PFGGPIAAARVGYMNGQYVLNPTTAELPQSDLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T +  ++     +E A  S++     +    +++  +I    +
Sbjct: 176 LVVAGTANAVLMV---ESEAAILSEEVMLGAVVYGHEQMQVVINAINE 220


>gi|70932569|ref|XP_737786.1| exosome complex exonuclease rrp41 [Plasmodium chabaudi chabaudi]
 gi|56513462|emb|CAH83474.1| exosome complex exonuclease rrp41, putative [Plasmodium chabaudi
           chabaudi]
          Length = 227

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 94/233 (40%), Gaps = 27/233 (11%)

Query: 2   RLSGRQENQMREISLTRR---VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           RL GR+ ++ R I +      +   A+G    + G+T +L+      ++    ++     
Sbjct: 13  RLDGRKCDEYRLIKINMGNQNIFTDADGFAFYEIGNTKILSYIQGPTEL---KKSDDKCS 69

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           I  +  + P +  ++ K++         + EI   I     +++ L    + +I I   +
Sbjct: 70  IKCDVFLSPFNVYDKRKKKTK----DNITNEISAYIRNICENIILLDLYKNSEINIFLYI 125

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           I+ DGG + AAI    +AL D                 +K  ++A S   L    IVD +
Sbjct: 126 IERDGGIKHAAINTCILALIDAGIA-------------IKYFISACSVLYLQNQIIVDGN 172

Query: 179 YGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
             E ++   +   V+  ++  I+ ++  AE      D F +M+    D   ++
Sbjct: 173 QLEINSGSPELTMVIELNTHKIILLEFDAE---VPIDIFESMVQTCIDSCVNI 222


>gi|115534063|ref|NP_497324.3| hypothetical protein BE0003N10.1 [Caenorhabditis elegans]
          Length = 738

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 22/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--------TTATLEEKVPMWIR 52
           +R  GR+ ++ R I++   + K   G  + + G T ++          A   + V   + 
Sbjct: 333 IRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTVTFDSPAAAFHPDSVAQLLG 392

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
           + +       Y     +        +++ R+ G       +  ++L+++           
Sbjct: 393 SQRKKSFMLHYEFPGFAINEFGTTRSLNRREIGHG----ALAEKSLKNLFPAD-FPYAT- 446

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            + C V++++G +  A++ G  +AL D    M++ +    +     G ++  +       
Sbjct: 447 RLACQVLESNGSSSMASVCGGSLALFDAGVPMKNAAAGVAI-----GLISDEAEPETKYR 501

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G     Q   +    ++      L  A+  I  +  
Sbjct: 502 VLTDILGIEDYAGDMDFKVAGTRDG-FTAAQLDVKNGGLTRRQLTESLQAARAGIDHV-- 558

Query: 233 LQK 235
           LQK
Sbjct: 559 LQK 561



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 75/227 (33%), Gaps = 25/227 (11%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG-NRVKRE 77
            ++++A  + +  FGD  ++ T      V    +      +  +    P ++   R+   
Sbjct: 44  HLARFASSTVVASFGDNAVMATV-----VQRKSKQGDGSGVPLQVEYRPSASAIGRIPTN 98

Query: 78  AVSGR--QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
            +     Q      I R I R++R ++  ++    QII     +  +       I  A  
Sbjct: 99  FLRRELSQSDNEILISRAIDRSIRPLLPGNSY-ETQIICKPLALDENADQIMLGINAAST 157

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDANFVMT 194
           AL                S    G +AA+       G   V+    E     ++    M 
Sbjct: 158 ALQ-------------ISSAAYNGPLAALRVARTARGDFHVNPTQEELREASLNLIVAMR 204

Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
                V ++     +  S +H    L++A   +A L +  + + +  
Sbjct: 205 KHEKTVMIELDGRES--SAEHLEHALDVAFRHVAKLHEAMEQLTAEP 249


>gi|332851858|ref|ZP_08433761.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           6013150]
 gi|332867443|ref|ZP_08437603.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           6013113]
 gi|332873102|ref|ZP_08441059.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           6014059]
 gi|322506580|gb|ADX02034.1| Polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           1656-2]
 gi|323516459|gb|ADX90840.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332729643|gb|EGJ60979.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           6013150]
 gi|332733983|gb|EGJ65127.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           6013113]
 gi|332738614|gb|EGJ69484.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           6014059]
          Length = 695

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 94/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR    +R + +   V + A GS L   G+T  L T TL       +      TK  
Sbjct: 315 RIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +      R+ G      R+  R +++V+  +      I I  D
Sbjct: 375 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA ++L D                 LK  VA I+ G++  G     
Sbjct: 431 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G I  +Q   +    +++     LN A      ++  
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNE 536

Query: 234 QKDVIS 239
              VIS
Sbjct: 537 MNKVIS 542



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 35/172 (20%)

Query: 77  EAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDC----DVIQADGGTRTA 128
               G++ GR+ E    I R+I R +R +         Q+          ++AD     A
Sbjct: 73  PGGYGKREGRASEAETLISRLIDRPIRPLFPEGYYNEIQVTATVVSSDKTMEAD----IA 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G   AL                    +G + A   G++ G  +++ ++ + +  D+D
Sbjct: 129 AMLGTSAALAIAGT-------------PFRGPIGAARVGLINGEYVLNPNFEQMAQSDLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233
                T+S  ++     +E    S+D            + +A   I +    
Sbjct: 176 LVVAGTESAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAIQAINEFAAA 224


>gi|169797384|ref|YP_001715177.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           AYE]
 gi|184156693|ref|YP_001845032.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           ACICU]
 gi|213155801|ref|YP_002317846.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           AB0057]
 gi|215484824|ref|YP_002327059.1| Polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           AB307-0294]
 gi|239500905|ref|ZP_04660215.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           AB900]
 gi|260556276|ref|ZP_05828495.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           ATCC 19606]
 gi|301348030|ref|ZP_07228771.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           AB056]
 gi|301510806|ref|ZP_07236043.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           AB058]
 gi|301594566|ref|ZP_07239574.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           AB059]
 gi|187471097|sp|A3M1M7|PNP_ACIBT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702585|sp|B7H0Z1|PNP_ACIB3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702586|sp|B7I3U1|PNP_ACIB5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702587|sp|B2I2Q0|PNP_ACIBC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702589|sp|B0VEA3|PNP_ACIBY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169150311|emb|CAM88208.1| polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Acinetobacter baumannii AYE]
 gi|183208287|gb|ACC55685.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Acinetobacter baumannii ACICU]
 gi|193076200|gb|ABO10821.2| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           ATCC 17978]
 gi|213054961|gb|ACJ39863.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           AB0057]
 gi|213985856|gb|ACJ56155.1| Polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           AB307-0294]
 gi|260410331|gb|EEX03630.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
           ATCC 19606]
          Length = 697

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 94/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR    +R + +   V + A GS L   G+T  L T TL       +      TK  
Sbjct: 317 RIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +      R+ G      R+  R +++V+  +      I I  D
Sbjct: 377 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA ++L D                 LK  VA I+ G++  G     
Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G I  +Q   +    +++     LN A      ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNE 538

Query: 234 QKDVIS 239
              VIS
Sbjct: 539 MNKVIS 544



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 35/172 (20%)

Query: 77  EAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDC----DVIQADGGTRTA 128
               G++ GR+ E    I R+I R +R +         Q+          ++AD     A
Sbjct: 75  PGGYGKREGRASEAETLISRLIDRPIRPLFPEGYYNEIQVTATVVSSDKTMEAD----IA 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G   AL                    +G + A   G++ G  +++ ++ + +  D+D
Sbjct: 131 AMLGTSAALAIAGT-------------PFRGPIGAARVGLINGEYVLNPNFEQMAQSDLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233
                T+S  ++     +E    S+D            + +A   I +    
Sbjct: 178 LVVAGTESAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAIQAINEFAAA 226


>gi|328955438|ref|YP_004372771.1| polyribonucleotide nucleotidyltransferase [Coriobacterium glomerans
           PW2]
 gi|328455762|gb|AEB06956.1| polyribonucleotide nucleotidyltransferase [Coriobacterium glomerans
           PW2]
          Length = 761

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 87/234 (37%), Gaps = 28/234 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTATLEEKVPMWIRN----TKH 56
           R+ GR+ +++R I +         GS L + G T +L   A         +         
Sbjct: 319 RVDGRRADEIRPIMVKDAYLPLVHGSGLFQRGQTQVLSVLALGMLNESQRLDTIEPVEGK 378

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++  +Y   P STG   +  A   R+ G       +  RAL  V+   +     I +  
Sbjct: 379 RYMH-QYNFPPFSTGETGRMGAPKRREIGHGH----LAERALLPVLPDESEFPYAIRVVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+   + +AL D                 +K  V+ I+ G++       
Sbjct: 434 EVLESNGSSSMASTCASCLALMD-------------GGVPIKRPVSGIAMGLIQENGKTV 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED   D+D     T+ G I  +Q   +    + D     L  A+  
Sbjct: 481 VLSDIQGIEDFLGDMDFKVTGTERG-ITALQMDNKATGLTFDILRQALEQARAG 533



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 73/218 (33%), Gaps = 27/218 (12%)

Query: 22  KYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78
           K A G+ LVK GDT  LTT  + ++      +             G +P   G  +KRE 
Sbjct: 24  KQATGAALVKQGDTTALTTVVVSKERKNYDFFPLTVDFNEKLYAVGRIP---GGFLKRE- 79

Query: 79  VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138
             GR   +     RMI R +R           QI++   V          +  GA ++L 
Sbjct: 80  --GRASDKGTLTARMIDRPIRPSFPDGFRNEVQIVVTTLVADQTNPIDVISTMGASLSL- 136

Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC--GYPIVDLDYGEDSTIDVDANFVMTDS 196
                              +G +A +  G     G  IV+  Y E    D+D     T  
Sbjct: 137 ------------TLGGVPFEGPLACVRIGRSGDSGEFIVNPTYEEIEASDLDLVLAGTRD 184

Query: 197 GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
             I  V+  A+    S+    A +   +  I      Q
Sbjct: 185 F-ISMVEAGADE--ISEQDMLAAMEFGQRAIGAFCDEQ 219


>gi|289423077|ref|ZP_06424892.1| polyribonucleotide nucleotidyltransferase [Peptostreptococcus
           anaerobius 653-L]
 gi|289156408|gb|EFD05058.1| polyribonucleotide nucleotidyltransferase [Peptostreptococcus
           anaerobius 653-L]
          Length = 696

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 83/245 (33%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL----TTATLEEKVPMWIRNTKH 56
           +R   R  +++R I     +     GS +   G T +L      A  + +    +    +
Sbjct: 316 VRPDNRALDEIRPIWCETGLIPRTHGSAIFTRGQTQVLNVTTLGALGDGQKLDGLDEEDN 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         I +  
Sbjct: 376 KRYMHHYNFPAYSVGETRPSRGPGRREIGHG----ALAERALVPVIPSQDDFPYAIRLVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ ++G T  A++  + ++L D    ++D      +  +      A+         + D
Sbjct: 432 EVLSSNGSTSQASVCASTLSLLDAGVPIKDMVAGIAMGLIKHHDKVAV---------LSD 482

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T+ G +  +Q   + A   +      L  AK     ++   K 
Sbjct: 483 IQGMEDHLGDMDFKVAGTEHG-VTAIQMDIKIAGIDEQVLRQALKQAKAGRMHILGEMKK 541

Query: 237 VISNE 241
           VI+  
Sbjct: 542 VITEP 546



 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 86/233 (36%), Gaps = 27/233 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R++S+      +   G+C++++GDT L+  AT      + +  +  +          G +
Sbjct: 14  RKLSVEVGKICEMTNGNCIMRYGDTMLMVNATKSAEPRDGIDFFPLSVDFEEKLYSVGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R +R +         Q++     +  D    
Sbjct: 74  P---GGFLKRE---GKASEKAVLTSRLIDRPIRPLFPEGFRNDVQVVATVLSVDQDCTPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +AL                     G   ++  G++ G  +V+    +     
Sbjct: 128 IVAMIGSSIALS-------------ISDIPFNGPTGSVLIGLVDGEFVVNPTQEQREVST 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +      T    I+ V+  AE      +     +  A + I  ++   +++++
Sbjct: 175 LHLVVSGTKDA-IMMVEAGAEE--IDDEIVLNAILFAHEEIKKIVAFIEEIVA 224


>gi|167772649|ref|ZP_02444702.1| hypothetical protein ANACOL_04030 [Anaerotruncus colihominis DSM
           17241]
 gi|167665127|gb|EDS09257.1| hypothetical protein ANACOL_04030 [Anaerotruncus colihominis DSM
           17241]
          Length = 706

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 85/228 (37%), Gaps = 26/228 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA---TLEEKVPM-WIRNTKHG 57
           R+ GR+ +++R ++    +     GS +   G T +LT A   T+ E   +  I + +  
Sbjct: 315 RVDGRKMDEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTVATLGTISEAQKLDGIDDQEQK 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  RAL  V+         I +  +
Sbjct: 375 RYIHHYNFPSYSVGETRPSRGPGRREIGHG----ALAERALEPVIPPVEEFPYTIRLVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           V+ ++G T   +I G+ +AL D                 +K  VA ISCG++        
Sbjct: 431 VLSSNGSTSQGSICGSTLALMDAGV-------------PIKRPVAGISCGLITEGDRWMT 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +VD+   ED   D+D     T+ G I  +Q   +    + D       
Sbjct: 478 MVDIQGLEDFFGDMDFKVGGTEKG-ITAIQMDLKIVGLTYDIIREAFE 524



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 74/226 (32%), Gaps = 36/226 (15%)

Query: 13  EISLTRRV---SKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           +++           A  S LV++G+T +L   T      E +  +  +          G 
Sbjct: 16  KMTFETGKMCCLSNA--SVLVRWGETVVLVNVTASAKPREGIDFFPLSVDFEEKLYAVGK 73

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+ +KRE+   R   ++    R++ R +R +          +++    +  D   
Sbjct: 74  IP---GSFIKRES---RPSDKAILSSRLVDRPIRPLFPKDMRNDCSVVMTVMSVDPDCLP 127

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
             A + G   AL                     G +A I+ G++ G  IV  D       
Sbjct: 128 EIAGMVGTSFALS-------------ISDIPWNGPIAGINVGLVDGEIIVSPDAA--QRA 172

Query: 186 DVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
             D N  V  +   I  ++  A            ML+       ++
Sbjct: 173 KSDLNLTVAANEDVICMIEAGANEVA-----NDVMLDAIIKGHEEI 213


>gi|153939959|ref|YP_001391710.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum F
           str. Langeland]
 gi|187610258|sp|A7GG00|PNP_CLOBL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|152935855|gb|ABS41353.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum F
           str. Langeland]
          Length = 702

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 84/244 (34%), Gaps = 16/244 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           R  GR  +++R I     +     G+ L   G T ++T AT     + ++   I   +  
Sbjct: 312 RPDGRAFDEVRPIGCEVGILPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIAEEESK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  RAL  ++         I +  +
Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSQEEFPYTIRLVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A++ G+ +AL D    ++  +    +  +    +            I D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSDDLE-------REKVITDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   +    S       L  AK     ++   K+ 
Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITSIQFDTKIKGLSNSCVKDALEGAKKARLHILGKIKEC 539

Query: 238 ISNE 241
           I   
Sbjct: 540 IPEP 543



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 86/236 (36%), Gaps = 31/236 (13%)

Query: 12  REISL---TRRVSKYAEGSCLVKFGDTHLL--TTAT--LEEKVPMWIRNTKHGWITAEYG 64
           R++ +      +   A     + +GDT ++    A+    E +  +  +  +       G
Sbjct: 12  RKMKVDFGKTGMLSNAA--IFMSYGDTVVMINANASKEPREGIDFFPLSVDYEERLYSVG 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G  +KRE   G+   +S    R I R LR +         QI+     ++ D  
Sbjct: 70  KIP---GGFIKRE---GKPSDKSILHARSIDRPLRPLFPNGYRNDVQIVNTVLSVEQDNL 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               AI G+ +AL                S      VAA+S G++ G  I++    +   
Sbjct: 124 PEILAINGSSLALC-------------LSSIPFTTPVAAVSVGLVDGEFIINPTVAQREN 170

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             +D     T    I+ V+   +     ++  +  +    +   +++  Q++ ++ 
Sbjct: 171 TILDLTVCATKE-RIMMVEAGGQE--IDEETMYNAILFGFEECKNIVAFQEEAVAK 223


>gi|166712594|ref|ZP_02243801.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 704

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR  + +R IS    V     GS L   G+T  +   TL       + +   G   
Sbjct: 315 VRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAVSGEYK 374

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  A   R+ G      R+  R + +V+         I +  
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHG----RLAKRGVLAVMPSLEEFPYTIRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PIKAPVAGIAMGLVKEGNDFV 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  AK     ++ 
Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILG 536

Query: 233 LQKDVISNE 241
                ++  
Sbjct: 537 EMAHALTTP 545



 Score = 71.7 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 69/192 (35%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ +VKF DT LL TA    +  E    +     +       G +P 
Sbjct: 15  VTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +   I R+I R +R +         QII     +  D     A
Sbjct: 74  --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G +AA   G   G  I++    E     ++
Sbjct: 129 ALIGASAALSLAGT-------------PFNGPIAAAKVGYKNGEYILNPTVTELKDSQLE 175

Query: 189 ANFVMTDSGHIV 200
                T +  ++
Sbjct: 176 LVVAGTANAVLM 187


>gi|290968451|ref|ZP_06559990.1| polyribonucleotide nucleotidyltransferase [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781447|gb|EFD94036.1| polyribonucleotide nucleotidyltransferase [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 716

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 88/244 (36%), Gaps = 20/244 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRN----TK 55
           +R  GR+ +++R +S    +     G+ L   G T +L+ ATL        I      T 
Sbjct: 312 IRPDGRKVDEVRPVSCEVGLFARTHGTGLFTRGQTQILSFATLAPLSEAQHIDGVGLETD 371

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y     S G          R+ G      ++  RAL  V+         I + 
Sbjct: 372 RRYMH-HYNFPSFSVGETRSSRGPGRREIGHG----KLAERALVQVLPSEEEFPYAIRVV 426

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            +V++++G +   ++ G+ +AL D    ++       +  V KG              + 
Sbjct: 427 SEVLESNGSSSMGSVCGSTLALMDAGVPLQAPVAGVAMGLVTKGE---------DFTILT 477

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED+  D+D     T  G +  +Q   +     ++     L  A +    ++    
Sbjct: 478 DIQGMEDALGDMDFKVAGTTKG-VTAIQMDIKIKGLRREILEQALQQAHEGRLHIMGKML 536

Query: 236 DVIS 239
             IS
Sbjct: 537 TAIS 540



 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 86/232 (37%), Gaps = 27/232 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R +++      K A G+ LV++GDT +  TAT      E    +     +       G +
Sbjct: 13  RTLTVEVGKLAKQASGAALVRYGDTAVFVTATGAKEAREDADFFPLTVDYEEKMYSVGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+    +    R+I R +R +   +      ++     +  D    
Sbjct: 73  P---GGFIKRE---GKPPESATLFARLIDRPIRPLFPKTYRHEVHVVAYDFCVDHDNAPE 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA V+L                     G +A +  G + G  +++    +    D
Sbjct: 127 IAAMIGASVSLCM-------------SHIPFAGPIAGVRVGRVDGQFVINPTVVQSEKSD 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           +D     T    I+ V+G AE+    +      + +A + I   +  Q+  +
Sbjct: 174 MDFVVAGTKDA-ILMVEGGAEQVP--EADILDAIMVAHEEIKKAVAFQESFL 222


>gi|157368740|ref|YP_001476729.1| polynucleotide phosphorylase/polyadenylase [Serratia proteamaculans
           568]
 gi|187611288|sp|A8G911|PNP_SERP5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157320504|gb|ABV39601.1| Polyribonucleotide nucleotidyltransferase [Serratia proteamaculans
           568]
          Length = 705

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL         +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +++         + +  +
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAMMPKPEDFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEQDNFVV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISTP 544



 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           +++   +  + A  + +V   DT +  T   +         +     +   T   G +P 
Sbjct: 16  LTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR         R+I R +R +   S L   Q+I     +         
Sbjct: 75  --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSLNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + +   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGSARVGYINNQYVLNPTSDELKESSLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +G ++ V+  +E    S+D     +
Sbjct: 177 LVVAGT-AGAVLMVE--SEADVLSEDQMLGAV 205


>gi|29347973|ref|NP_811476.1| polynucleotide phosphorylase/polyadenylase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253572562|ref|ZP_04849964.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 1_1_6]
 gi|81444021|sp|Q8A4N6|PNP_BACTN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|29339875|gb|AAO77670.1| polyribonucleotide nucleotidyltransferase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251837977|gb|EES66066.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 1_1_6]
          Length = 708

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 91/250 (36%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           RL GR+  ++R I           GS +   G+T  LT+ T    L+EK+   +      
Sbjct: 319 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDNVLEHGKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +         + +  +
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNPGEEKY 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     LN AK+    ++
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHIL 538

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 539 DKITETIAEP 548



 Score = 92.8 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 34/245 (13%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHG 57
             GR       I+L      K A+GS +++ G+T LL T    ++ VP         ++ 
Sbjct: 12  PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
              A +G  P   G   KRE   GR         R++ RALR +   +     ++ ++  
Sbjct: 66  EKFAAFGRFP---GGFTKRE---GRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNII 117

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +  ADG           V + D L  +   +          G ++ +    + G  +++ 
Sbjct: 118 LFSADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINP 166

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            + +    D+D     T   +I+ V+G  E    S+      + +A + I    K Q + 
Sbjct: 167 TFDQLEKADMDLMVAATYD-NIMMVEG--EMHEVSEAELLEAMKVAHEAIKVHCKAQME- 222

Query: 238 ISNEV 242
           ++ EV
Sbjct: 223 LTEEV 227


>gi|254495070|ref|ZP_05107994.1| polyribonucleotide nucleotidyltransferase [Polaribacter sp. MED152]
 gi|85819420|gb|EAQ40577.1| polyribonucleotide nucleotidyltransferase [Polaribacter sp. MED152]
          Length = 746

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 79/230 (34%), Gaps = 20/230 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +RL GR+   +R I           GS +   G+T  L T TL    E            
Sbjct: 317 LRLDGRKTTDIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLGTSREANQIDMPSYEGE 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG        S R+ G       +  RAL+ ++         + +  
Sbjct: 377 ETFYLHYNFPPFSTGEARPIRGTSRREVGHG----NLAQRALKGMIPAD--CPYTVRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G +  A +    +AL D    ++   +   +  +  G   A+         + D
Sbjct: 431 EVLESNGSSSMATVCSGTMALMDAGVQLKKPVSGIAMGLISDGTNHAV---------LSD 481

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           +   ED   D+D     T  G I   Q   +    S +     L  A+D 
Sbjct: 482 ILGDEDHLGDMDFKVTGTADG-ITACQMDIKIKGLSYEILVKALKQARDG 530



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 76/227 (33%), Gaps = 26/227 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R ISL      K A GS +V+ G   LL T      ++ V        +    A  G  P
Sbjct: 16  RTISLETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKDVDFLPLTVDYREKFAAAGRYP 75

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KREA        +    R++ R LR +         Q++I       D     
Sbjct: 76  ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKDYHSETQVMIQMMSHDDD----- 124

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                    + D +  +   +         +  ++ +  G + G  I++    + +  D+
Sbjct: 125 --------VMPDAMAGLAASAAIQLSDLPFECPISEVRVGRVNGEFIINPTRAQLAEADI 176

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D   +   +  ++ V+G  E    S++     +  A + I      Q
Sbjct: 177 DM-MIGASADSVMMVEG--EMDECSEEEMAEAIKFAHEAIKVQCAAQ 220


>gi|148251685|ref|YP_001236270.1| polynucleotide phosphorylase/polyadenylase [Bradyrhizobium sp.
           BTAi1]
 gi|187470940|sp|A5E870|PNP_BRASB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146403858|gb|ABQ32364.1| Polyribonucleotide nucleotidyltransferase [Bradyrhizobium sp.
           BTAi1]
          Length = 720

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 87/241 (36%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I     V   A GS L   G+T  L   TL           +  T   
Sbjct: 316 RIDGRDVKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDALSGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      ++  RA+  V+           +  +
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHG----KLAWRAIHPVLPPHHEFPYTTRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V +++G +  A + G+ +AL D    ++  +    +  +L+G   A+         + D+
Sbjct: 432 VTESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRYAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+SG I  +Q   +    +++     L  A++    ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTESG-ITSLQMDIKIEGITEEIMRVALGQAREGRIHILGEMSKA 541

Query: 238 I 238
           +
Sbjct: 542 L 542



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 81/236 (34%), Gaps = 38/236 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ +  +G+T +L T     +  E V        +       G +
Sbjct: 14  RPLKLETGKIARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLTVDYQEKAYAAGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +   + R+I R +R +   +     Q+I+       +    
Sbjct: 74  P---GGYFKRE---GRPTEKETLVSRLIDRPIRPLFVDAWRNETQVIVTTLSHDMENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                    KG + A   G      I++    E +   
Sbjct: 128 ILAMVAASAAL-------------TLSGVPFKGPIGAARVGFANDEYILNPTLDEMTDTQ 174

Query: 187 VDANFVMTDSGHIVEVQGSAER---------ATFSQDHF----FAMLNLAKDRIAD 229
           +D     T S  ++ V+  A+            F   HF     A++ LA+    +
Sbjct: 175 LDLVVAGT-SDAVLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKE 229


>gi|189459946|ref|ZP_03008731.1| hypothetical protein BACCOP_00579 [Bacteroides coprocola DSM 17136]
 gi|189433319|gb|EDV02304.1| hypothetical protein BACCOP_00579 [Bacteroides coprocola DSM 17136]
          Length = 727

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 90/250 (36%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57
           RL GR+  ++R I        Y  GS +   G+T  L+T TL  K+   I     +    
Sbjct: 319 RLDGRKTTEIRPIWCEVGPLPYPHGSSIFTRGETQSLSTVTLGTKLDEKIVDDVLDQHKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +         + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYCVRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGV-------------PIKNPVSGIAMGLIKNAGEEKY 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T +G I   Q   +    + D     L  AK+    ++
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKNG-ITATQMDIKCDGLTYDILEKALLQAKEGREYIL 538

Query: 232 KLQKDVISNE 241
               + I   
Sbjct: 539 NKLTECIGKP 548



 Score = 85.5 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 86/231 (37%), Gaps = 21/231 (9%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWITAEYGMLPRS 69
           R I+L      K A+G+ +++ G+T LL T    ++ VP             +Y    R 
Sbjct: 15  RTITLETGKLAKQADGAVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYKEKYSAFGRF 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   KRE   G+         R++ RALR +   +      + ++  +  ADG      
Sbjct: 75  PGGFTKRE---GKASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIILYSADG------ 123

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
                V + D L  +   +          G ++ +    + G  +++  + +    D+D 
Sbjct: 124 -----VDMPDALAGLAASAALTVSDIPFGGPISEVRVARIDGQFVINPTFEQLEKADMDL 178

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
               T   +I+ V+G  E    S+      L  A + I    K Q +++  
Sbjct: 179 MVAATYE-NIMMVEG--EMNEVSEQDLLEALKAAHEAIKIHCKAQMELMEE 226


>gi|126640439|ref|YP_001083423.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter baumannii
           ATCC 17978]
          Length = 662

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 94/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR    +R + +   V + A GS L   G+T  L T TL       +      TK  
Sbjct: 282 RIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTTTLGNTRDALMVDTLAGTKTD 341

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +      R+ G      R+  R +++V+  +      I I  D
Sbjct: 342 NFMLHYNFPAYSVGETGRESGPKRREIGHG----RLARRGVQAVLPAADRFPYVIRIVSD 397

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA ++L D                 LK  VA I+ G++  G     
Sbjct: 398 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLVKEGERFAV 444

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G I  +Q   +    +++     LN A      ++  
Sbjct: 445 LSDILGDEDHLGDMDFKVAGSANG-ITALQMDIKIEGITEEIMEVALNQAFAGRMHILNE 503

Query: 234 QKDVIS 239
              VIS
Sbjct: 504 MNKVIS 509



 Score = 66.3 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 35/172 (20%)

Query: 77  EAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDC----DVIQADGGTRTA 128
               G++ GR+ E    I R+I R +R +         Q+          ++AD     A
Sbjct: 40  PGGYGKREGRASEAETLISRLIDRPIRPLFPEGYYNEIQVTATVVSSDKTMEAD----IA 95

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G   AL                    +G + A   G++ G  +++ ++ + +  D+D
Sbjct: 96  AMLGTSAALAIAGT-------------PFRGPIGAARVGLINGEYVLNPNFEQMAQSDLD 142

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIKL 233
                T+S  ++     +E    S+D            + +A   I +    
Sbjct: 143 LVVAGTESAVLMV---ESEAKELSEDQMLGAVLFGHDEMQIAIQAINEFAAA 191


>gi|123968917|ref|YP_001009775.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. AS9601]
 gi|187610314|sp|A2BSA7|PNP_PROMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123199027|gb|ABM70668.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. AS9601]
          Length = 721

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 97/238 (40%), Gaps = 36/238 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           REI LT    +  A GS +++ GDT LL TAT   K       +    +  +Y     + 
Sbjct: 13  REIRLTTGLYAPQASGSVMIECGDTSLLVTATKTAK----KEPSDFLPLICDYEEKLFAA 68

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----AD 122
           G      ++RE   GR   R+  I R+I R +R +         QI+  C  +     AD
Sbjct: 69  GRIPGGFMRRE---GRPPERATLIARLIDRPMRPLFPTWMGDEIQIVASCLSLDERVPAD 125

Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
                 A+TGA +A                      G +AA+  G++    I++  Y E 
Sbjct: 126 ----VLAVTGASIA-------------TLVGEIPFYGPMAAVRVGLIGDDFILNPSYREI 168

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
              D+D     +  G IV ++  A +   S+      ++   + + +LIK Q+D++ +
Sbjct: 169 EKGDLDIVVAGSPDG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVTELIKSQEDLLQD 223



 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 92/252 (36%), Gaps = 33/252 (13%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R+ GR  +++R+IS +  +  K   GS L + G T +L+T TL    P   +       +
Sbjct: 323 RVDGRDLDEVRKISASAGILPKRVHGSALFQRGLTQVLSTTTL--GTPSDAQEMDDLNPS 380

Query: 61  AE------YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            E      Y   P S G  R  R       G R      +  RA+  V+         + 
Sbjct: 381 TEKTYLHHYNFPPYSVGETRPMRT-----PGRREIGHGALAERAIIPVLPGKETFPYVLR 435

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-- 171
           +  +V+ ++G T   ++ G+ ++L D                 LK  V+  + G++    
Sbjct: 436 VVSEVLSSNGSTSMGSVCGSTLSLLDAGV-------------PLKAPVSGTAMGLIKEGK 482

Query: 172 --YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED   D+D     TD G I  +Q   +            +  A+     
Sbjct: 483 EVRILTDIQGIEDFLGDMDFKVAGTDKG-ITALQMDMKITGLPVSIISDAIKKARPARIH 541

Query: 230 LIKLQKDVISNE 241
           +++  +  I   
Sbjct: 542 ILEKMQGAIDKP 553


>gi|229822930|ref|ZP_04449000.1| hypothetical protein GCWU000282_00222 [Catonella morbi ATCC 51271]
 gi|229787743|gb|EEP23857.1| hypothetical protein GCWU000282_00222 [Catonella morbi ATCC 51271]
          Length = 700

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 92/240 (38%), Gaps = 26/240 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +S +  +     GS L   G T +LT AT     E +V   +   + 
Sbjct: 318 VRPDGRRIDEIRPLSSSVALLPRVHGSGLFTRGQTQVLTAATLAPLGEHQVIDGLGIEEG 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL+ V+         I +  
Sbjct: 378 KRFIHHYNFPNFSVGETGR----VGSPGRREIGHGALGERALKQVIPAPEDFPYTIRLVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY--- 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++  G    
Sbjct: 434 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLVMEGEDYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I  +Q   +    ++      L  AK    +++ 
Sbjct: 481 VLTDIQGLEDHLGDMDFKVAGTAAG-ITALQMDIKIQGITEAILTEALTQAKKARLEILD 539



 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 90/233 (38%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLP 67
           R +S+    ++K A G+ LV++GDT +L+ A   +K      +     +       G +P
Sbjct: 14  RPLSVEIGELAKQANGAVLVRYGDTVVLSAAVASKKAGTGDFFPLTVHYIEKMYAVGKVP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R LR +         QI      +  D     
Sbjct: 74  ---GGFIKRE---GRPSEAATLTSRLIDRPLRPMFPEGVRNEIQITNTVLSVDQDCTPEM 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ GA +AL                     G VA ++ G + G  +++    +    D+
Sbjct: 128 AAMLGASLALA-------------VSDIPFDGPVAGVNVGRVNGEIVINPTVAQAELSDI 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +     T +  I  V+ SA+    S+      L      I +L+  Q ++++ 
Sbjct: 175 ELTVAGTATA-INMVESSAKE--VSEADMLEALLKGHAAIKELVAFQNEIVAQ 224


>gi|58582837|ref|YP_201853.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84624704|ref|YP_452076.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188577676|ref|YP_001914605.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|75434649|sp|Q5GXV3|PNP_XANOR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123739068|sp|Q2P0X5|PNP_XANOM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226704832|sp|B2SVJ9|PNP_XANOP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|58427431|gb|AAW76468.1| polynucleotide phosphorylase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84368644|dbj|BAE69802.1| polynucleotide phosphorylase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188522128|gb|ACD60073.1| polyribonucleotide nucleotidyltransferase [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 704

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR  + +R IS    V     GS L   G+T  +   TL       + +   G   
Sbjct: 315 VRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAVSGEYK 374

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  A   R+ G      R+  R + +V+         I +  
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGAPKRREIGHG----RLAKRGVLAVMPSLEEFPYTIRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PIKAPVAGIAMGLVKEGNDFV 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  AK     ++ 
Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTAEG-VSALQMDIKIEGITEEIMKQALQQAKAGRLHILG 536

Query: 233 LQKDVISNE 241
                ++  
Sbjct: 537 EMAHALTTP 545



 Score = 69.0 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 69/192 (35%), Gaps = 24/192 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ +VKF DT LL TA    +  E    +     +       G +P 
Sbjct: 15  VTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAGGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +   I R+I R +R +         QII     +  D     A
Sbjct: 74  --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIA 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G +AA   G   G  I++    +     ++
Sbjct: 129 ALIGASAALSLAGT-------------PFNGPIAAAKVGYKNGEYILNPTVTDLKDSQLE 175

Query: 189 ANFVMTDSGHIV 200
                T +  ++
Sbjct: 176 LVVAGTANAVLM 187


>gi|242240745|ref|YP_002988926.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii
           Ech703]
 gi|242132802|gb|ACS87104.1| Polyribonucleotide nucleotidyltransferase [Dickeya dadantii Ech703]
          Length = 722

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 97/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +    I +   G  T 
Sbjct: 331 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDELMGERTD 390

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 391 RFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKPEAFPYTVRVVSE 446

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 447 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDSYVV 493

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G +  +Q   +    +++     LN AK     ++ +
Sbjct: 494 LSDILGDEDHLGDMDFKVAGSREG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGV 552

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 553 MEQAISTP 560



 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 27/232 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T    + V           +T  Y     + G 
Sbjct: 32  VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHVKP---GQDFFPLTVNYQERTYAAGR 88

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 +RE   GR       I R+I R +R +         Q+I     +         
Sbjct: 89  IPGGFFRRE---GRPSEGETLISRLIDRPIRPLFPDGFFNEVQVIATVVSVNPQISPDIV 145

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 146 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKQSRLD 192

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                T+ G ++ V+  +E    ++D     +    ++   +I+  K +++ 
Sbjct: 193 LVVAGTE-GAVLMVE--SEADLLTEDQMLGAVVFGHEQQQVVIENIKSLVAE 241


>gi|163802308|ref|ZP_02196202.1| polynucleotide phosphorylase/polyadenylase [Vibrio sp. AND4]
 gi|159173837|gb|EDP58651.1| polynucleotide phosphorylase/polyadenylase [Vibrio sp. AND4]
          Length = 710

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  + TATL  +        +   +  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQAIVTATLGTQRDAQIIDELTGERKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R + +V+         + +  +
Sbjct: 376 NFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKSSVAGIAMGLVKEGDDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     LN A+     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTQTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537

Query: 234 QKDVISN 240
             + I+ 
Sbjct: 538 MDEAIAG 544



 Score = 66.7 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + +V   DT +  +   +++    +       +T  Y     + G 
Sbjct: 17  VTLETGVIARQASAAVMVTMDDTAVFVSVVGKKEA---VAGQDFFPLTVNYQERTYAAGK 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR         R+I R +R +   S     Q+I     +  D      
Sbjct: 74  IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPDSFKNEVQVIATVMSVNPDVQPDIV 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + +   G + G  +++    E     +D
Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGSARVGHIDGQLVLNPSNTELDASKLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T+S  ++     +E    +++   A +    D+   +IK   +
Sbjct: 178 LVVAGTESAVLMV---ESEADNLTEEEMLAAVVYGHDQQQVVIKAINE 222


>gi|60359866|dbj|BAD90152.1| mKIAA4013 protein [Mus musculus]
          Length = 308

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 89/256 (34%), Gaps = 23/256 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P  +     G++  
Sbjct: 55  RPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-VDAPDRGYVVP 113

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQE-IQRMIGRALRSVVDLSAL----GSRQIIIDC 116
              + P  +     R    G +   + + I  ++  +   V+    L    G    ++ C
Sbjct: 114 NVDLPPLCSS--RFRTGPPGEEAQVTSQFIADVVDNS--QVIKKEDLCISPGKLAWVLYC 169

Query: 117 DV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAIS 165
           D+  +  DG    A       AL +             + + + K +    ++ +  A S
Sbjct: 170 DLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRTNPVATS 229

Query: 166 CGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
             +      IVD    E+         V  + G +  +      +  +       ++ A 
Sbjct: 230 FAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPG-GSGLTGAKLQDCMSRAV 288

Query: 225 DRIADLIKLQKDVISN 240
            R  ++ KL  +VI +
Sbjct: 289 TRHKEVSKLLDEVIQS 304


>gi|33152626|ref|NP_873979.1| polynucleotide phosphorylase/polyadenylase [Haemophilus ducreyi
           35000HP]
 gi|81423299|sp|Q7VL91|PNP_HAEDU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33148850|gb|AAP96368.1| polyribonucleotide nucleotidyltransferase [Haemophilus ducreyi
           35000HP]
          Length = 712

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 92/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R +++   V     GS +   G+T  L  ATL  +        +   K  
Sbjct: 314 RIDGRTVDTVRALNICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 374 RFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVLAVMPSAEEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKATVAGIAMGLVKEDEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRKG-ITALQMDIKIEGITPEIMHIALNQAKGARMHILNV 535

Query: 234 QKDVI 238
            +  +
Sbjct: 536 MEQAL 540



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 75/232 (32%), Gaps = 27/232 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  +      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVSVVAKKEVKEGQDFFPLTVNYQERTYAAGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         QI+     +         
Sbjct: 74  --GGFFKRE---GRPSENETLIARLIDRPIRPLFPEGFFNEIQIVATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFINDQFVLNPTITEQKQSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                TD   ++     +E    S++   A +     +   +I+  K+ +  
Sbjct: 176 LVVAGTDKAVLMV---ESEADILSEEQMLAAVVFGHQQQQIVIENIKEFVKE 224


>gi|257096719|sp|B3PXD7|PNP_RHIE6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 712

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 316 RIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++  +      + +  +
Sbjct: 376 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   + A  +++     L+ A+     ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKIAGITEEIMKVALSQAQGGRTHILGEMAKA 541

Query: 238 ISN 240
           I+ 
Sbjct: 542 ITE 544



 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 70/222 (31%), Gaps = 31/222 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ L  +G+T +L T       +     +     +   T   G +
Sbjct: 14  RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR       + R+I R +R +         Q+++   VIQ D    
Sbjct: 74  P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVT--VIQHDLENN 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++     AL                     G V     G + G  +++    E   
Sbjct: 126 PDILSMVATSAAL-------------TLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             +D     T    ++     +E     +D     +      
Sbjct: 173 SSLDLVVAGTYDAVLMV---ESEAKELPEDVMLGAVMFGHKG 211


>gi|300718573|ref|YP_003743376.1| polyribonucleotide nucleotidyltransferase [Erwinia billingiae
           Eb661]
 gi|299064409|emb|CAX61529.1| Polyribonucleotide nucleotidyltransferase [Erwinia billingiae
           Eb661]
          Length = 714

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL         +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 375 SFLFHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKADAFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGENFVV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISTP 544



 Score = 69.0 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 77/234 (32%), Gaps = 35/234 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           +++   +  + A  + +V   DT +  T   +         +     +   T   G +P 
Sbjct: 16  VTIETGMMARQATAAVMVSMDDTAVFVTVVGKKTTKPGQDFFPLTVNYQERTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR       I R+I R +R +     +   QII     +         
Sbjct: 75  --GSFFRRE---GRPSEGETLISRLIDRPVRPLFPEGFINEVQIIATVVSVNPQVHPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G L    +++    E     +D
Sbjct: 130 ALIGASAALSLSGL-------------PFNGPIGAARVGYLNDQYVLNPTTDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                T  G ++ V+  AE    S+D     +    +        Q+ V+ +++
Sbjct: 177 LVVAGTQ-GAVLMVESEAE--LLSEDQMLGAVVFGHE--------QQQVVIDQI 219


>gi|212550826|ref|YP_002309143.1| polynucleotide phosphorylase/polyadenylase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|226702596|sp|B6YRB0|PNP_AZOPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|212549064|dbj|BAG83732.1| polyribonucleotide nucleotidyltransferase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 719

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 90/251 (35%), Gaps = 30/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56
           +R+ GR+  ++R I           GS +   G+T  L T TL  K+   I +       
Sbjct: 318 IRIDGRKTTEIRPIWSEVNPITGPHGSAIFTRGETQALATVTLGTKLNEKIIDDVLINDK 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P +TG    +  +  R+ G       +  RAL+ ++  +      I +  
Sbjct: 378 ERFLLHYNFPPFATGEARAQRGIGRREIGHG----NLAHRALKPIIPNN--YPYVIRVVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           D+++++G +  A +    ++L D                 +K  V+ I+ G++       
Sbjct: 432 DILESNGSSSMATVCAGTLSLMDAGVQ-------------IKRPVSGIAMGLIFEKEGSK 478

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G I   Q   +    S +     L+ AK     +
Sbjct: 479 YAILSDILGDEDHLGDMDFKVAGTKKG-ITATQMDIKIDGLSYEVLERALSQAKQGREYI 537

Query: 231 IKLQKDVISNE 241
           +    + I   
Sbjct: 538 LDKMLETIPEP 548



 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 86/230 (37%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R I+L      K A+G+ +++  +T +L T  +       V       ++    + +G  
Sbjct: 15  RTITLETGKLAKQADGAIVLRMNNTMILATVCVAKDTNPCVDFLPLQVEYKEKFSAFGRF 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR         R+I R LR +         ++ ++  +  +DG   
Sbjct: 75  P---GGFTKRE---GRASDYEILTCRLIDRTLRPLFPRD--YHSEVFVNIILFSSDG--- 123

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                     + D L  +   +     +    G ++ +    + G   ++  +GE +  D
Sbjct: 124 --------EDIPDALAGLAASAALSVSTIPFNGPISEVRVARIDGKFKINPTFGELAKAD 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D   V   + +I+ V+G  E    S++     +  A + I    K Q +
Sbjct: 176 MDI-MVGATADNIMMVEG--EMNEVSEEEMLEAIKAAHEAIKPQCKAQIE 222


>gi|71278713|ref|YP_268932.1| polynucleotide phosphorylase/polyadenylase [Colwellia
           psychrerythraea 34H]
 gi|123774912|sp|Q482T5|PNP_COLP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|71144453|gb|AAZ24926.1| polyribonucleotide nucleotidyltransferase [Colwellia
           psychrerythraea 34H]
          Length = 705

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 92/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R + +   V     GS +   G+T  L TATL  +      +T  G  T 
Sbjct: 315 RIDGRDPESIRALDVMTGVLPRTHGSAVFTRGETQALVTATLGTQRDAQRLDTLMGDKTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 375 PFMLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGMLAVMPSLEEFPYAVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGEKFVV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +Q+     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGT-TGGITALQMDIKIEGITQEIMQIALNQAKAARTHILSV 536

Query: 234 QKDVISNE 241
             + I   
Sbjct: 537 MDEAIGGH 544



 Score = 64.7 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 76/228 (33%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L    +++ A  + +    DT +L +   +++            +T  Y     + G 
Sbjct: 16  VTLETGAIARQASAAVMASMDDTCVLVSVVGKKEAKP---GQDFFPLTVNYQERAYAAGK 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  KRE   GR       I R+I R +R +         Q+II    +  +      
Sbjct: 73  IPGSFFKRE---GRPSEEETLIARLIDRPIRPLFPEGFTNEVQVIITVVSVNPEIAPDII 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G V A   G   G  I++    E  T  +D
Sbjct: 130 SLIGTSAALA-------------ISGLPFSGPVGAARVGYTDGQYILNPLQSELPTSQLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TDS  ++     +E    S++     +    +++   +   K+
Sbjct: 177 LVVSGTDSAVLMV---ESEADVLSEEVMLGAVVYGHEQMQVAVSAIKE 221


>gi|190889779|ref|YP_001976321.1| polyribonucleotide nucleotidyltransferase [Rhizobium etli CIAT 652]
 gi|190695058|gb|ACE89143.1| polyribonucleotide nucleotidyltransferase protein [Rhizobium etli
           CIAT 652]
          Length = 706

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 310 RIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 369

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++  +      + +  +
Sbjct: 370 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVVSE 425

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  +L+G   A+         + D+
Sbjct: 426 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAV---------LSDI 476

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   + A  +++     L+ A+     ++      
Sbjct: 477 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKIAGITEEIMKVALSQAQGGRTHILGEMAKA 535

Query: 238 ISN 240
           I+ 
Sbjct: 536 ITE 538



 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 70/222 (31%), Gaps = 31/222 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ L  +G+T +L T       +     +     +   T   G +
Sbjct: 8   RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEKTYAAGKI 67

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR       + R+I R +R +         Q+++   VIQ D    
Sbjct: 68  P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVT--VIQHDLENN 119

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++     AL                     G V     G + G  +++    E   
Sbjct: 120 PDILSMVATSAAL-------------TLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDE 166

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             +D     T    ++     +E     +D     +      
Sbjct: 167 SSLDLVVAGTYDAVLMV---ESEAKELPEDVMLGAVMFGHKG 205


>gi|148703331|gb|EDL35278.1| exosome component 8, isoform CRA_f [Mus musculus]
          Length = 283

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 89/256 (34%), Gaps = 23/256 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P  +     G++  
Sbjct: 30  RPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-VDAPDRGYVVP 88

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQE-IQRMIGRALRSVVDLSAL----GSRQIIIDC 116
              + P  +     R    G +   + + I  ++  +   V+    L    G    ++ C
Sbjct: 89  NVDLPPLCSS--RFRTGPPGEEAQVTSQFIADVVDNS--QVIKKEDLCISPGKLAWVLYC 144

Query: 117 DV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAIS 165
           D+  +  DG    A       AL +             + + + K +    ++ +  A S
Sbjct: 145 DLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRTNPVATS 204

Query: 166 CGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
             +      IVD    E+         V  + G +  +      +  +       ++ A 
Sbjct: 205 FAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPG-GSGLTGAKLQDCMSRAV 263

Query: 225 DRIADLIKLQKDVISN 240
            R  ++ KL  +VI +
Sbjct: 264 TRHKEVSKLLDEVIQS 279


>gi|293393150|ref|ZP_06637465.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera DSM
           4582]
 gi|291424296|gb|EFE97510.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera DSM
           4582]
          Length = 706

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL         +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +++         + +  +
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAMMPKPEDFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEQDNFVV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISTP 544



 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           +++   +  + A  + +V   DT +  T   +         +     +   T   G +P 
Sbjct: 16  VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR         R+I R +R +   + L   Q+I     +         
Sbjct: 75  --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDNFLNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFSGPIGAARVGYINDQYVLNPTTDELKESRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T+ G ++ V+  +E    S+D     +
Sbjct: 177 LVVAGTE-GAVLMVE--SEADVLSEDQMLGAV 205


>gi|164660188|ref|XP_001731217.1| hypothetical protein MGL_1400 [Malassezia globosa CBS 7966]
 gi|159105117|gb|EDP44003.1| hypothetical protein MGL_1400 [Malassezia globosa CBS 7966]
          Length = 253

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 60/188 (31%), Gaps = 22/188 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+  + R + L   +   A GS L++ G T ++ +     +V           + 
Sbjct: 20  VRPDGRKAEEPRPLYLQTGIIPSASGSTLLESGHTKIVCSVHGPRQV-RGRHYAGKAEVN 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEI---QRMIGRALRSVVDLSALGSRQIIIDCD 117
            ++ M P S   R            R  E      +I +AL   + L  L    I +   
Sbjct: 79  VQFEMAPFSEKERR---------SSRDTEAPVPAALIQQALLPAIRLDLLPKSSIDVHIT 129

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           V+ +D      ++ G               +    L  V      AIS            
Sbjct: 130 VLDSD-----TSMLGCAAMGATAASAALAEAGVQMLGLVTGATATAISTLPSTNKAQQLW 184

Query: 174 IVDLDYGE 181
           +VD  + E
Sbjct: 185 LVDPTHRE 192


>gi|2815604|gb|AAC39558.1| Opa-interacting protein OIP2 [Homo sapiens]
          Length = 265

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 73/216 (33%), Gaps = 24/216 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P        G++  
Sbjct: 21  RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPS-TDAPDKGYVVP 79

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL---GSRQIII-D 115
              + P  +         SG  G  +Q   + I   +    ++    L     + + +  
Sbjct: 80  NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLY 134

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
           CD+  +  DG    A       AL +             + + + K +    ++ H  A 
Sbjct: 135 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVAT 194

Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHI 199
           S  +      IVD    E+         VM + G +
Sbjct: 195 SFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKL 230


>gi|319408006|emb|CBI81660.1| polyribonucleotide nucleotidyltransferase [Bartonella
           schoenbuchensis R1]
          Length = 733

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 90/243 (37%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  + +R I     +   A GS L   G+T  L  ATL    +E+    +  T   
Sbjct: 317 RIDGRTLSTVRSIQSEVGILPRAHGSALFTRGETQALVIATLGTSEDEQYIDSLTGTYKE 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      ++  RA+  ++         I    +
Sbjct: 377 TFLLHYNFPPFSVGETGRISSPGRREIGHG----KLAWRAIHPMLPTKDSFPYTIRAVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  + +G   AI         + D+
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAI---------LSDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T +G I  +Q   +    +++     L  AKD    ++      
Sbjct: 484 LGDEDHLGDMDFKVAGTKNG-ITSLQMDIKIDGITEEIMKIALEQAKDGRIHILNEMSKA 542

Query: 238 ISN 240
           +++
Sbjct: 543 LTS 545



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 79/233 (33%), Gaps = 35/233 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ L  +G+T +L T       +     +     +   T   G +
Sbjct: 14  RPLILETGKIARQADGAVLATYGETIVLATVVSAKNPKPDQDFFPLTVNYQEKTYAVGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE+   R       I R+I R +R +         Q+I+   VIQ D    
Sbjct: 74  P---GGYFKRES---RPSENETLISRLIDRPIRPLFVDGYKNDTQVIVS--VIQHDLENN 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  +  AL                     G +A    G   G  +++    E   
Sbjct: 126 PDILAMIASSAALTLSGI-------------PFVGPIAGARVGYCNGQYVLNPHIDEMPE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKL 233
             +D     T++  ++     +E     +D     +   +      I  +IKL
Sbjct: 173 SKLDLVVAGTENAVLMV---ESEAQELPEDVMLGAVIFGQKGFQPVIDAIIKL 222


>gi|149276240|ref|ZP_01882384.1| polynucleotide phosphorylase/polyadenylase [Pedobacter sp. BAL39]
 gi|149232760|gb|EDM38135.1| polynucleotide phosphorylase/polyadenylase [Pedobacter sp. BAL39]
          Length = 715

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 89/249 (35%), Gaps = 28/249 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +RL GR    +R I         A GS +   G+T  LTT TL  K    + +      +
Sbjct: 316 IRLDGRDVRTVRPIWSEVGYLPSAHGSAVFTRGETQSLTTVTLGSKDDEQMIDGAFINGY 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     STG          R+ G       +  R+L+ V+         I I  
Sbjct: 376 NKFLLHYNFPGFSTGEVRPNRGAGRREIGHG----NLAMRSLKKVLPGIEENPYTIRIVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           D+++++G +  A +    +AL D                 +K  V+ I+ G++       
Sbjct: 432 DILESNGSSSMATVCAGTLALMDAGIK-------------IKAPVSGIAMGLITDEKTGK 478

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T+ G IV  Q   +      +     LN AK+    +
Sbjct: 479 YAILSDILGDEDHLGDMDFKVTGTEKG-IVACQMDLKINGLKWEVLTNALNQAKEARLHI 537

Query: 231 IKLQKDVIS 239
           +   K  I+
Sbjct: 538 LNEMKKTIA 546



 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 88/231 (38%), Gaps = 29/231 (12%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R I +      K A+GS +V+ GDT LL T       +  V     +  +    A  G +
Sbjct: 14  RTIEIETGKLAKQADGSVVVRMGDTMLLATVVSTVGAKSGVDFLPLSVDYQEKYAAAGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  ++REA   R       I R++ RALR +         Q++I   +I +D    
Sbjct: 74  P---GGFLRREA---RLSDYEVLISRLVDRALRPMFPEDYHSDTQVMIT--LISSDKNI- 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED-STI 185
                     + DCL  +   +          G ++ +    + G  +++  Y  D    
Sbjct: 125 ----------MPDCLAGLAASAAIAVSDIPFNGPISEVRVAKIDGQFVINP-YVSDLERA 173

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            ++     T++  IV V+G A+    S+      +  A   I   ++ QK+
Sbjct: 174 TMEFLVAGTEND-IVMVEGEADE--ISESDMVEAIEFAHKAIVVQVQAQKE 221


>gi|260461975|ref|ZP_05810220.1| Polyribonucleotide nucleotidyltransferase [Mesorhizobium
           opportunistum WSM2075]
 gi|259032222|gb|EEW33488.1| Polyribonucleotide nucleotidyltransferase [Mesorhizobium
           opportunistum WSM2075]
          Length = 715

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 88/241 (36%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R+I     V     GS L   G+T  L  ATL         ++  G    
Sbjct: 317 RIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQYVDSLTGMYKE 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++  +      + +  +
Sbjct: 377 KFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPSADQFPYTLRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  + +G   A+         + D+
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFAV---------LSDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T SG I  +Q   +    +++     L+ AKD    ++      
Sbjct: 484 LGDEDHLGDMDFKVAGTTSG-ITSLQMDIKIEGITEEIMKIALDQAKDGRQHILGEMAHA 542

Query: 238 I 238
           +
Sbjct: 543 L 543



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 31/229 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTT-ATLEEKVP---MWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ L  +G+T +L T  +++E  P    +     +   T   G +
Sbjct: 14  RPLILETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR   +   + R+I R +R +         QI++   V+Q D    
Sbjct: 74  P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFADGYKNDTQIVVT--VVQHDLEND 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               +I     AL                     G V     G + G  +++    E   
Sbjct: 126 PDILSIVATSAAL-------------TLSGVPFMGPVGGARVGYINGEYVLNPHIDEMQE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
             +D     T    ++     +E     ++     +         +I  
Sbjct: 173 SKLDLVVAGTADAVLMV---ESEAKELGEELMLGAVMFGHRGFQPVIDA 218


>gi|300779041|ref|ZP_07088899.1| polyribonucleotide nucleotidyltransferase [Chryseobacterium gleum
           ATCC 35910]
 gi|300504551|gb|EFK35691.1| polyribonucleotide nucleotidyltransferase [Chryseobacterium gleum
           ATCC 35910]
          Length = 751

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 84/246 (34%), Gaps = 20/246 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTK 55
           +RL GR    +R I         A GS +   G+T  LT  TL        +   I    
Sbjct: 322 IRLDGRDPQTIRPIWSEIDYLPGAHGSAIFTRGETQSLTAVTLGSVKDANMIDSVITQHD 381

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +    Y   P STG        S R+ G       +  RAL +V+         I I 
Sbjct: 382 ERFF-LHYNFPPFSTGEARPLRGTSRREVGHG----NLAQRALTAVIPAE--NPYTIRIV 434

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            D+++++G +  A +    +AL D    +    +   +     G +     G      + 
Sbjct: 435 SDILESNGSSSMATVCAGTLALMDAGVQITKPVSGIAM-----GLITDTKSGKF--TVLS 487

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T  G I   Q   +    S D     L  AKD    ++    
Sbjct: 488 DILGDEDHLGDMDFKVTGTADG-ITACQMDIKIQGLSMDIMEKALMQAKDGRLHILNKIT 546

Query: 236 DVISNE 241
           + IS  
Sbjct: 547 ETISQP 552



 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 79/234 (33%), Gaps = 24/234 (10%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           REI++      K A+GS +VK G T LL T    ++            +T +Y       
Sbjct: 17  REITIETGKLAKQADGSVVVKCGGTMLLATVVANKEANP---GVDFLPLTVDYR-EKFYA 72

Query: 71  GNRVKREAVSG--RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
           G R+         +         R++ R LR +         Q++I   +I  D      
Sbjct: 73  GGRIPGNFFRREAKPSDDEVLTMRLVDRVLRPLFPEDFHAEVQVMIS--LISYD------ 124

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
                   + + L  +   +          G ++      + G   V+  Y      D+D
Sbjct: 125 -----KEVMPEALAGLAASAAIAITDIPFNGPMSEARVVRIDGELSVNPSYENLLKSDID 179

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                T    IV V+G  E    S+      +N A   I   I+ Q + ++ +V
Sbjct: 180 IMVGATKD-SIVMVEG--EMKEISEQEMLEAINFAHAEIRKQIEAQ-ERLAAKV 229


>gi|120556251|ref|YP_960602.1| polynucleotide phosphorylase/polyadenylase [Marinobacter aquaeolei
           VT8]
 gi|187610283|sp|A1U5Z6|PNP_MARAV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|120326100|gb|ABM20415.1| Polyribonucleotide nucleotidyltransferase [Marinobacter aquaeolei
           VT8]
          Length = 722

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 88/248 (35%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  + TATL     + I +   G    
Sbjct: 334 RIDGRDNKTVRPIKVEVGVLPSVHGSALFTRGETQAIVTATLGTTRDVQIIDALEGERKD 393

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     R+  R + +V+         I    +
Sbjct: 394 PFLFHYNFPPYSVGEAGR----MGSPGRREIGHGRLAKRGVAAVMPTIEEFPYAIRAVSE 449

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G+ +AL D                 LK  VA I+ G++        
Sbjct: 450 ITESNGSSSMASVCGSSLALMDAGV-------------PLKAPVAGIAMGLVKEGDKFAV 496

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     L  A      ++  
Sbjct: 497 LTDILGDEDHLGDMDFKVAGTKEG-VTALQMDIKIQGITDEIMEIALEQANAARLHILDE 555

Query: 234 QKDVISNE 241
              VI+  
Sbjct: 556 MNKVIAEP 563



 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 73/229 (31%), Gaps = 28/229 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
            +L    +++ A G+ LV  GDT +L T    ++            +T  Y     + G 
Sbjct: 33  FTLETGRIARQATGAVLVSTGDTAVLGTVVGAKEPKP---GQGFFPLTVNYQEKTYAAGK 89

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR   +     R+I R +R +     +   Q+++              
Sbjct: 90  IPGGFFKRE---GRPSEKETLTSRLIDRPIRPLFPNGYMNEVQVVLTV------------ 134

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187
            ++ +     D    +   +          G + A   G        ++  + E ST  +
Sbjct: 135 -MSASKNHDPDIAAMIAASAALAISGIPFDGPIGAARVGYTNEKGYFLNPTFEELSTSLL 193

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D     TD   ++     +E    ++D     +      +   I   K+
Sbjct: 194 DMVVAGTDEAVLMV---ESEAKGLTEDQMLGAVLFGHQEMQTAITAIKE 239


>gi|13474634|ref|NP_106203.1| polynucleotide phosphorylase/polyadenylase [Mesorhizobium loti
           MAFF303099]
 gi|81778152|sp|Q98BI3|PNP_RHILO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|14025388|dbj|BAB51989.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium loti
           MAFF303099]
          Length = 715

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 88/241 (36%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R+I     V     GS L   G+T  L  ATL         ++  G    
Sbjct: 317 RIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQYVDSLTGMYKE 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++  +      + +  +
Sbjct: 377 KFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPSADQFPYTLRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  + +G   A+         + D+
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFAV---------LSDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T +G I  +Q   +    +++     L+ AKD    ++      
Sbjct: 484 LGDEDHLGDMDFKVAGTANG-ITSLQMDIKIEGITEEIMKIALDQAKDGRQHILGEMAHA 542

Query: 238 I 238
           +
Sbjct: 543 L 543



 Score = 84.0 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 31/229 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTT-ATLEEKVP---MWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ L  +G+T +L T  +++E  P    +     +   T   G +
Sbjct: 14  RPLILETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR   +   + R+I R +R +         QI++   V+Q D    
Sbjct: 74  P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFADGYKNDTQIVVT--VVQHDLEND 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               +I     AL                     G V     G + G  +++    E   
Sbjct: 126 PDILSIVATSAAL-------------TLSGVPFMGPVGGARVGYINGEYVLNPHIDEMQE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
             +D     T    ++     +E     ++     +         +I  
Sbjct: 173 SKLDLVVAGTADAVLMV---ESEAKELGEELMLGAVMFGHKGFQPVIDA 218


>gi|170743024|ref|YP_001771679.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium sp.
           4-46]
 gi|226702664|sp|B0UEX5|PNP_METS4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|168197298|gb|ACA19245.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium sp.
           4-46]
          Length = 725

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 90/241 (37%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     V   A GS L   G+T  L  ATL         +   G    
Sbjct: 316 RIDGRDVRTVRPILSEVGVLPRAHGSALFTRGETQALVVATLGTGDDEQFIDALEGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++  +      + +  +
Sbjct: 376 TFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAVHPLLPPAHEFPYTLRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G+ +AL D    +        +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMATVCGSSLALMDAGVPLRRPVAGIAMGLILEGERYAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G +  +Q   + A  +++     L+ AK+  A ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTEEG-VTSLQMDIKIAGITEEIMRVALDQAKEGRAHILGEMAKA 541

Query: 238 I 238
           +
Sbjct: 542 L 542



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 89/255 (34%), Gaps = 48/255 (18%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA-TLEEKVPMWIRNTKHGWITAEYGMLPRS 69
           R++ L    V++ A+G+ +  +G+T +L T  +++E  P          +T  Y     +
Sbjct: 14  RKLVLETGKVARQADGAVVASYGETTVLATVVSMKEPKP----GIDFLPLTVNYQERAYA 69

Query: 70  TG----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
            G       KRE   GR   +   + R+I R +R +         Q+++       +   
Sbjct: 70  AGRIPGGYFKRE---GRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLENDP 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              ++  A  AL                     G + A   G L G   ++    E    
Sbjct: 127 DIVSMVAASAAL-------------TLSGVPFMGPIGAARVGYLGGQYKLNPTVQEMEES 173

Query: 186 DVDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLN----LAKDRIAD--- 229
            +D     TD+  ++ V+  A+            F   HF  ++     LA+    +   
Sbjct: 174 SLDLVVAGTDAA-VLMVESEAKELPEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRD 232

Query: 230 -----LIKLQKDVIS 239
                L +++K V+ 
Sbjct: 233 FQPTDLTEVEKAVLE 247


>gi|18250193|gb|AAK73855.2|AC092690_1 Hypothetical protein BE0003N10.1 [Caenorhabditis elegans]
          Length = 745

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 22/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--------TTATLEEKVPMWIR 52
           +R  GR+ ++ R I++   + K   G  + + G T ++          A   + V   + 
Sbjct: 333 IRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTVTFDSPAAAFHPDSVAQLLG 392

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
           + +       Y     +        +++ R+ G       +  ++L+++           
Sbjct: 393 SQRKKSFMLHYEFPGFAINEFGTTRSLNRREIGHG----ALAEKSLKNLFPAD-FPYAT- 446

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            + C V++++G +  A++ G  +AL D    M++ +    +     G ++  +       
Sbjct: 447 RLACQVLESNGSSSMASVCGGSLALFDAGVPMKNAAAGVAI-----GLISDEAEPETKYR 501

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G     Q   +    ++      L  A+  I  +  
Sbjct: 502 VLTDILGIEDYAGDMDFKVAGTRDG-FTAAQLDVKNGGLTRRQLTESLQAARAGIDHV-- 558

Query: 233 LQK 235
           LQK
Sbjct: 559 LQK 561



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 75/227 (33%), Gaps = 25/227 (11%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG-NRVKRE 77
            ++++A  + +  FGD  ++ T      V    +      +  +    P ++   R+   
Sbjct: 44  HLARFASSTVVASFGDNAVMATV-----VQRKSKQGDGSGVPLQVEYRPSASAIGRIPTN 98

Query: 78  AVSGR--QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
            +     Q      I R I R++R ++  ++    QII     +  +       I  A  
Sbjct: 99  FLRRELSQSDNEILISRAIDRSIRPLLPGNSY-ETQIICKPLALDENADQIMLGINAAST 157

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDANFVMT 194
           AL                S    G +AA+       G   V+    E     ++    M 
Sbjct: 158 ALQ-------------ISSAAYNGPLAALRVARTARGDFHVNPTQEELREASLNLIVAMR 204

Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
                V ++     +  S +H    L++A   +A L +  + + +  
Sbjct: 205 KHEKTVMIELDGRES--SAEHLEHALDVAFRHVAKLHEAMEQLTAEP 249


>gi|313204132|ref|YP_004042789.1| polyribonucleotide nucleotidyltransferase [Paludibacter
           propionicigenes WB4]
 gi|312443448|gb|ADQ79804.1| polyribonucleotide nucleotidyltransferase [Paludibacter
           propionicigenes WB4]
          Length = 713

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 92/248 (37%), Gaps = 30/248 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           RL GR+  ++R I         A GS +   G+T  LTT TL  K+   + +        
Sbjct: 318 RLDGRKTTEIRPIWSEVDYLPGAHGSAVFTRGETQSLTTVTLGTKMDEKLVDDALFKGKE 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG       V  R+ G       +  RAL++++  +      + +  D
Sbjct: 378 RFLLHYNFPPFSTGEAKASRGVGRREVGHG----NLALRALKNMIPEN--YPYVVRVVSD 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 432 ILESNGSSSMATVCAGTLALMDAGVQ-------------IKKPVSGIAMGLISENKGKNF 478

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     LN AK     ++
Sbjct: 479 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILETALNQAKAGRMHIL 537

Query: 232 KLQKDVIS 239
              ++ + 
Sbjct: 538 GKIQETLE 545



 Score = 86.7 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 93/230 (40%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA-TLEEKVP---MWIRNTKHGWITAEYGML 66
           R IS+      K A+GS +V+ GDT LL T  + ++ VP       +  +    A +G  
Sbjct: 14  RTISIETGKLAKQADGSVMVRMGDTMLLATVCSAQDAVPGTDFMPLSVDYKEKYAAFGRF 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR       + R++ RALR +            ++  ++ +DG   
Sbjct: 74  P---GGFLKRE---GRASDYEILVSRLVDRALRPLFPDDFHAET--FVNVMLVSSDG--- 122

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                     + D L  +   +          G ++ +    + G  +++  + + +T D
Sbjct: 123 --------EDMPDALAGLAASAALAVSDVPFNGPISEVRVARIDGQFVINPTFAQLATAD 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           ++     T   +I+ V+G  E    S++     + +A + I    ++Q +
Sbjct: 175 LEIMVAATID-NIMMVEG--EMKEVSEEVLLEAMKVAHEAIKVHCQVQLE 221


>gi|86608913|ref|YP_477675.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|123502399|sp|Q2JLJ5|PNP_SYNJB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|86557455|gb|ABD02412.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 712

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 88/247 (35%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           +R+ GR+ +++R +S    +     GS L   G T +L+  TL           +     
Sbjct: 321 VRVDGRKLDEVRPVSCRVGLIPRVHGSALFNRGLTQVLSITTLGTPGDAQELDDLHPVDE 380

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      +   R+ G       +  RAL  V+         + +  
Sbjct: 381 KRYMHHYNFPGFSVGETRPSRSPGRREIGHG----ALAERALVPVLPKEEEFPYVVRVVS 436

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V+ ++G T   ++ G+ ++L D                 +K  V+ ++ G++       
Sbjct: 437 EVLSSNGSTSMGSVCGSTLSLMDAGV-------------PIKAPVSGVAMGLIKEGDEVR 483

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I  +Q   +    + D     +  AK     ++ 
Sbjct: 484 ILTDIQGIEDFLGDMDFKVAGTRAG-ITALQMDMKITGITVDVVEQAIRQAKAGREFILD 542

Query: 233 LQKDVIS 239
              + I+
Sbjct: 543 KMLETIA 549



 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 85/233 (36%), Gaps = 26/233 (11%)

Query: 12  REISLTRRVSKYAEGS-CLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           REI +   +     G    +  G+T +L TAT       V        +       G +P
Sbjct: 13  REIDINIGLMAPQAGCGVWLTSGETSILVTATRQPGRPGVDFMPLLVDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   GR   R+  I R+I R +R +         Q++     +        
Sbjct: 73  ---GGYLRRE---GRPPERATLISRLIDRPIRPLFPEWLRDDVQVVATTLSVDDTVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
             I GA +A+H                    G VAA+  G++    I++  Y E    D+
Sbjct: 127 LCILGASLAIHGA-------------RIPFNGPVAAVRVGLVKDEFILNPTYAEIEAGDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D        G ++ V+  A +    +      +    + I +L+K Q+ V+++
Sbjct: 174 DLVVAGCADG-VIMVEAGANQ--LPEKDVVEAIEFGFEAIQELLKAQQQVLAD 223


>gi|2462716|emb|CAA71697.1| pnp [Yersinia enterocolitica]
          Length = 711

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 320 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   +     + +  +
Sbjct: 380 SFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSPSEFPYTVRVVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 436 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDENFVV 482

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 483 LSDILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 541

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 542 MEQAISTP 549



 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 70/212 (33%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           +++   +  + A  + +V   DT +  T   +         +     +   T   G +P 
Sbjct: 21  VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 79

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR         R+I R +R +   S L   Q+I     +         
Sbjct: 80  --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 134

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 135 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 181

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +G ++ V+  +E    S+D     +
Sbjct: 182 LVVAGT-AGAVLMVE--SEADILSEDQMLGAV 210


>gi|270265063|ref|ZP_06193326.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera
           4Rx13]
 gi|270040997|gb|EFA14098.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera
           4Rx13]
          Length = 686

 Score =  105 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL         +   G  T 
Sbjct: 294 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTD 353

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +++         + +  +
Sbjct: 354 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAMMPKPEDFPYTVRVVSE 409

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 410 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEQDNFVV 456

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 457 LSDILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 515

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 516 MEQAISTP 523



 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 66/203 (32%), Gaps = 26/203 (12%)

Query: 22  KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGNRVKRE 77
           + A  + +V   DT +  T   +         +     +   T   G +P   G+  +RE
Sbjct: 4   RQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP---GSFFRRE 60

Query: 78  AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137
              GR         R+I R +R +   S L   Q+I     +         A+ GA  AL
Sbjct: 61  ---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPDIVAMIGASAAL 117

Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197
                                G + A   G +    +++    E     +D     T +G
Sbjct: 118 SLSGI-------------PFNGPIGAARVGYINNQYVLNPTTDELKESSLDLVVAGT-AG 163

Query: 198 HIVEVQGSAERATFSQDHFFAML 220
            ++ V+  +E    S+D     +
Sbjct: 164 AVLMVE--SEADVLSEDQMLGAV 184


>gi|114329015|ref|YP_746172.1| polynucleotide phosphorylase/polyadenylase [Granulibacter
           bethesdensis CGDNIH1]
 gi|122326039|sp|Q0BPK3|PNP_GRABC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|114317189|gb|ABI63249.1| polyribonucleotide nucleotidyltransferase [Granulibacter
           bethesdensis CGDNIH1]
          Length = 720

 Score =  105 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 89/246 (36%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR    +R I     +   A GS L   G+T  L  ATL       + +   G   
Sbjct: 314 IRIDGRDTRTVRPIIGEVGILPRAHGSALFTRGETQALCVATLGTGQDEQVVDALTGEYR 373

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R     ++  RA+  V+         + +  
Sbjct: 374 SHFMLHYNFPPYSVGEAGR----MGSPGRREIGHGKLAWRAVHPVLPAKDAFPYTLRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++ +++G +  A + G+ +AL D                 LK  VA I+ G++       
Sbjct: 430 EITESNGSSSMATVCGSSLALMDAGV-------------PLKRPVAGIAMGLIKEDRAFA 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T+ G +  +Q   +  + + +     L  A+D    ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGTEQG-VTSLQMDIKITSITTEIMRIALQQARDGRMHILG 535

Query: 233 LQKDVI 238
                I
Sbjct: 536 EMAKAI 541



 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 76/227 (33%), Gaps = 27/227 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + L    +++ A+G+ L + GDT +L TA                 +T  Y     + 
Sbjct: 14  RTLVLETGKIARQADGAVLARLGDTIVLCTAVG---AKSAKAGQDFFPLTVNYQEKAFAA 70

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G       KRE   GR       + R+I R +R +         Q+I        +    
Sbjct: 71  GKIPGGFFKRE---GRPSEHETLVSRLIDRPIRPLFPEGFYNEVQVIATVLSHDMENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G   AL                     G VAA   G++ G  +++    + +   
Sbjct: 128 IVALIGCSAALTLSGI-------------PFFGPVAASRVGLVNGAFVLNPTLEQRAESK 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +D     T  G ++ V+  AE    S+D   A +         +I  
Sbjct: 175 LDLVVAGTAEG-VLMVESEAEE--LSEDQMLAAVEFGHKGFQPVIDA 218


>gi|260771810|ref|ZP_05880728.1| polyribonucleotide nucleotidyltransferase [Vibrio metschnikovii CIP
           69.14]
 gi|260613102|gb|EEX38303.1| polyribonucleotide nucleotidyltransferase [Vibrio metschnikovii CIP
           69.14]
          Length = 711

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 96/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 316 RIDGREKDMIRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGERKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
           +    Y   P   G      +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 376 YFMLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSADEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G+ +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEDENFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     LN AK     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTSNG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537

Query: 234 QKDVISN 240
               I+ 
Sbjct: 538 MDQAIAG 544



 Score = 63.6 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 77/234 (32%), Gaps = 35/234 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +    DT +  +   +    E    +     +   T   G +P 
Sbjct: 17  VTLETGVMARQATAAVMATMDDTAVFVSVVGKKDAVEGQDFFPLTVNYQERTYAAGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +   +     Q+I     +  +      
Sbjct: 76  --GGFFKRE---GRPSESETLIARLIDRPIRPLFHDAFTNEVQVIATVVSVNPNVQPDIV 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + A   G + G  +++    E     +D
Sbjct: 131 TMIGTSAALA-------------ISGMPFNGPIGAARVGHINGQLVLNPSPKELDQSRLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                T+ G ++ V+  +E    S++   A +    D        Q+ V+ N +
Sbjct: 178 LVVAGTE-GAVLMVE--SEADILSEEEMLAAVVYGHD--------QQQVVINAI 220


>gi|45595709|gb|AAH67250.1| Exosc8 protein [Mus musculus]
          Length = 270

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 89/256 (34%), Gaps = 23/256 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P  +     G++  
Sbjct: 17  RPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-VDAPDRGYVVP 75

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQE-IQRMIGRALRSVVDLSAL----GSRQIIIDC 116
              + P  +     R    G +   + + I  ++  +   V+    L    G    ++ C
Sbjct: 76  NVDLPPLCSS--RFRTGPPGEEAQVTSQFIADVVDNS--QVIKKEDLCISPGKLAWVLYC 131

Query: 117 DV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAIS 165
           D+  +  DG    A       AL +             + + + K +    ++ +  A S
Sbjct: 132 DLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRTNPVATS 191

Query: 166 CGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
             +      IVD    E+         V  + G +  +      +  +       ++ A 
Sbjct: 192 FAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPG-GSGLTGAKLQDCMSRAV 250

Query: 225 DRIADLIKLQKDVISN 240
            R  ++ KL  +VI +
Sbjct: 251 TRHKEVSKLLDEVIQS 266


>gi|240849876|ref|YP_002971264.1| polyribonucleotide nucleotidyltransferase [Bartonella grahamii
           as4aup]
 gi|240266999|gb|ACS50587.1| polyribonucleotide nucleotidyltransferase [Bartonella grahamii
           as4aup]
          Length = 731

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 87/243 (35%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR  + +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 317 RIDGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      ++  RA+  ++         I    +
Sbjct: 377 TFLLHYNFPPFSVGETGRFGSPGRREIGHG----KLAWRAIHPMLPTKESFPYTIRAVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  + +G   A+         + D+
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAV---------LSDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   +    +++     L  AK     ++      
Sbjct: 484 LGDEDHLGDMDFKVAGTENG-ITALQMDIKIDGITEEIMKIALEQAKGGRIHILNEMAKA 542

Query: 238 ISN 240
           +++
Sbjct: 543 LTS 545



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 79/229 (34%), Gaps = 31/229 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R ++L    +++ A+G+ +  +G+T +L T     + +     +     +   +   G +
Sbjct: 14  RPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEKSYAVGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G  +KRE+   R       + R+I R +R +         Q+I+   VIQ D    
Sbjct: 74  P---GGYLKRES---RPSENETLVSRLIDRPIRPLFVEGYKNDTQVIVS--VIQHDLENN 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  +  AL                     G +A    G   G  +++    E   
Sbjct: 126 PDILAMIASSAAL-------------TLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
             +D     T+S  ++     +E     +D     +      +  ++  
Sbjct: 173 SKLDLVVAGTESAVLMV---ESEAQELPEDIMLGAVMFGHKGLQPVLDA 218


>gi|254692991|ref|NP_081424.3| exosome complex component RRP43 isoform 2 [Mus musculus]
 gi|21759414|sp|Q9D753|EXOS8_MOUSE RecName: Full=Exosome complex component RRP43; AltName:
           Full=Exosome component 8; AltName: Full=Ribosomal
           RNA-processing protein 43
 gi|22208743|emb|CAD43467.1| CBP-interacting protein 3 [Mus musculus]
 gi|148703329|gb|EDL35276.1| exosome component 8, isoform CRA_d [Mus musculus]
          Length = 276

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 89/256 (34%), Gaps = 23/256 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P  +     G++  
Sbjct: 23  RPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-VDAPDRGYVVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQE-IQRMIGRALRSVVDLSAL----GSRQIIIDC 116
              + P  +     R    G +   + + I  ++  +   V+    L    G    ++ C
Sbjct: 82  NVDLPPLCSS--RFRTGPPGEEAQVTSQFIADVVDNS--QVIKKEDLCISPGKLAWVLYC 137

Query: 117 DV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAIS 165
           D+  +  DG    A       AL +             + + + K +    ++ +  A S
Sbjct: 138 DLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRTNPVATS 197

Query: 166 CGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
             +      IVD    E+         V  + G +  +      +  +       ++ A 
Sbjct: 198 FAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPG-GSGLTGAKLQDCMSRAV 256

Query: 225 DRIADLIKLQKDVISN 240
            R  ++ KL  +VI +
Sbjct: 257 TRHKEVSKLLDEVIQS 272


>gi|194741988|ref|XP_001953491.1| GF17196 [Drosophila ananassae]
 gi|190626528|gb|EDV42052.1| GF17196 [Drosophila ananassae]
          Length = 771

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 85/249 (34%), Gaps = 17/249 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------- 54
           R  GR  +Q+R IS    + K   GS L + G T +  T +L+        ++       
Sbjct: 355 RCDGRSYDQLRNISCQVDLYKPLHGSALFQRGQTQVFCTVSLDSPESAMKLDSLAALESG 414

Query: 55  --KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
             K       Y   P +TG   +     G  G R      +  R L   +         +
Sbjct: 415 GLKAKNFMLHYEFPPYATGEVGR----IGPLGRRELGHGALAERGLLPTLPHD--YPFTV 468

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            +  +V++++G +  A++ G  +AL D    +   +    +  V K      +  +    
Sbjct: 469 RLTSEVLESNGSSSMASVCGGSLALMDAGVPVTAPAAGVAIGLVTKYE-NDDTKHLQDYR 527

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G    +Q   +            L  A D  + ++ 
Sbjct: 528 ILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSKILD 586

Query: 233 LQKDVISNE 241
           +  + I   
Sbjct: 587 IMGEAIREP 595



 Score = 84.8 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 88/232 (37%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R ++ +   ++++A GS + + GDT ++ TA  + K            +  +Y +   ++
Sbjct: 50  RNMTFSSGRLARFANGSSVCQMGDTAVMVTAVAKAKPTP---GQGFMPLVVDYRLKNAAS 106

Query: 71  GNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
           G R+    +    G   +EI   R+I R+LR +         Q++ +   + A       
Sbjct: 107 G-RIPMNFMRREMGPSEKEILSARLIDRSLRPLFSKDYRTETQLVCNMLAMDAVHSPDVL 165

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           AI  A +AL                     G + A+  G+  G  +++    E  +  +D
Sbjct: 166 AINAASMALS-------------LSDIPWNGPIGAVRVGLCDGEVLINPTRRELQSSQLD 212

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN----LAKDRIADLIKLQKD 236
                T    +V ++G  +     Q      +      A+  I ++ +LQK 
Sbjct: 213 LVVSATKQNLVVMLEG--KGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKA 262


>gi|117618225|ref|YP_857790.1| polynucleotide phosphorylase/polyadenylase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|187470961|sp|A0KND9|PNP_AERHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|117559632|gb|ABK36580.1| polyribonucleotide nucleotidyltransferase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 712

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 92/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R +S+   V   A GS L   G+T  +  ATL  +        +   +  
Sbjct: 314 RIDGRDPEMIRALSVATGVLPRAHGSALFTRGETQAMVVATLGTERDAQNIDELTGNRAD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 374 RFMLHYNFPPYCVGETGMMGSPKRREIGHG----RLAKRGVAAVMPSADEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G+ +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEEEGFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A+     ++K+
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTTEG-VTALQMDIKIEGITKEIMEIALKQARGARLHILKV 535

Query: 234 QKDVI 238
             + I
Sbjct: 536 MDEAI 540



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 75/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +V   DT +  T       +     +     +   T   G +P 
Sbjct: 15  VTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTVNYQERTYAAGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR       I R+I R +R +     L   Q++     +         
Sbjct: 74  --GGFFRRE---GRPSEGETLISRLIDRPIRPLFPEGFLNEVQVVATVMSVNPAVSPDIV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E    D+D
Sbjct: 129 AMIGASAALAISGI-------------PFGGPIGAARVGYMNGQYVLNPTTTELPQSDLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T +  ++     +E A  S++     +    +++  +I    +
Sbjct: 176 LVVAGTANAVLMV---ESEAAILSEEVMLGAVVFGHEQMQAVINAINE 220


>gi|302380540|ref|ZP_07269005.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311483|gb|EFK93499.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna
           ACS-171-V-Col3]
          Length = 714

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 96/249 (38%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           +R   R+ +Q+REI+    +     GS L K G T +L+  TL           + + + 
Sbjct: 312 IRPDNRKLDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQVLDGLIDQED 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G+     +   R+ G       +  RAL  V+         I +  
Sbjct: 372 KRYMHQYNFPPYSVGDARPLRSPGRREIGHG----ALAERALLPVIPSEEEFPYTIRVVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           +V+ ++G +  A++ G+ ++L D                 +K  VA I+ G++       
Sbjct: 428 EVLSSNGSSSQASVCGSTLSLLDAGV-------------PIKEPVAGIAMGLIKADDNVV 474

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           I+ D+   ED   D+D     T  G I  +Q   +    S++     L  A+     ++ 
Sbjct: 475 ILSDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKITGISEEILTEALERARVGRLHILS 533

Query: 233 LQKDVISNE 241
           L  + IS  
Sbjct: 534 LMNECISEP 542



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 88/233 (37%), Gaps = 31/233 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           +I +T   V++ A G+CL++ G+T LL TA       E V  +             G +P
Sbjct: 13  KIEVTIGKVAEQANGACLIQSGETVLLVTAVGSKEPREGVDFFPLTCDFEEKLYSVGKIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R LR +         Q+I     +  D     
Sbjct: 73  ---GGFIKRE---GRPSEKATLTARLIDRPLRPLFPEGYHNDVQVIATALSVDQDNTPDI 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ G+ +AL                     G   +++ GM+ G  I++    +    D+
Sbjct: 127 LAMIGSSIALS-------------ISDIPFLGPTGSVAVGMIDGEFIINPTKEQREKSDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK----LQKD 236
           +     T    I+ V+  A     ++      +  A + I  + +    +QK+
Sbjct: 174 ELTVAGTKDA-IMMVE--AGCNNITEQQVLKAILRAHEEIKKICEFIESIQKE 223


>gi|187934276|ref|YP_001885477.1| polynucleotide phosphorylase/polyadenylase [Clostridium botulinum B
           str. Eklund 17B]
 gi|226702638|sp|B2TJ61|PNP_CLOBB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187722429|gb|ACD23650.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum B
           str. Eklund 17B]
          Length = 704

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 87/244 (35%), Gaps = 16/244 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           R  GR  +++R +     +     G+ L   G T ++T AT     + ++   I   +  
Sbjct: 312 RPDGRAFDEVRPLGCEIGLLPRTHGTGLFTRGLTQVMTVATLGAVGDIQILDGIDEAQSK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  RAL  ++         I +  +
Sbjct: 372 RYMHHYNFPGYSVGEVKPLRGPGRREIGHG----ALAERALEPLIPSEEEFPYTIRLVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A++ G+ +AL D    ++  +    +  +    ++           + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPLKRPAAGIAMGLITSEDLS-------EEQVLTDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   +   FS +     +  A+     ++    + 
Sbjct: 481 QGIEDFFGDMDFKVAGTTEG-ITSIQVDTKLKGFSFNVVENAIRDARKARMTILDKINEC 539

Query: 238 ISNE 241
           IS+ 
Sbjct: 540 ISSP 543



 Score = 65.1 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 75/214 (35%), Gaps = 26/214 (12%)

Query: 31  KFGDTHLL--TTATLEEKV--PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGR 86
            +GDT +L    A+ E +V    +  + ++       G +P   G  +KRE   GR   +
Sbjct: 32  SYGDTVILTNVNASSEPRVGIDFFPLSVEYEERLYAVGKIP---GGFIKRE---GRPSEK 85

Query: 87  SQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMED 146
           +    R + R LR +         Q++     ++ D      AI  A +AL         
Sbjct: 86  AILNGRAVDRTLRPLFPKGYRNDVQVVCTVVSVEKDNLPEILAINAASMALC-------- 137

Query: 147 CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
                  S      VAA+  G++    IV+ +  E     +      T    ++ ++   
Sbjct: 138 -----LSSIPFTIPVAAVQVGLIDNNFIVNPNATEREESTLHLTVCATKE-RVMMIEAGG 191

Query: 207 ERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 +D     +    D    +I  Q++ +S 
Sbjct: 192 NEIP--EDIMIDAIKFGFDECQKIINFQEEAVSK 223


>gi|288556936|ref|YP_003428871.1| polynucleotide phosphorylase/polyadenylase [Bacillus pseudofirmus
           OF4]
 gi|288548096|gb|ADC51979.1| polynucleotide phosphorylase/polyadenylase [Bacillus pseudofirmus
           OF4]
          Length = 704

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 88/248 (35%), Gaps = 26/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT--ATLEEKVPMWIRNTKH 56
           +R  GR  +++R ++    +     GS L   G T  L   T  A  + ++   +   + 
Sbjct: 313 VRPDGRAIDEIRPLASQVDLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGIEES 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G            G R      +  RAL  ++         I +  
Sbjct: 373 KRFMHHYNFPQFSVGE----TGPIRGPGRREIGHGALGERALEPIIPSENDFPYTIRLVS 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G T  A+I  + +A+ D                 +K  VA I+ G++       
Sbjct: 429 EVLESNGSTSQASICASTLAMMDAGV-------------PIKAPVAGIAMGLVKQDEHLT 475

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G +  +Q   + +  +++     L  AK     ++ 
Sbjct: 476 VLTDIQGMEDALGDMDFKVAGTKEG-VTALQMDIKISGINREVLEQALEQAKRGRMVILD 534

Query: 233 LQKDVISN 240
                IS 
Sbjct: 535 NMLSAISE 542



 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 28/232 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           RE+++     +K A G+ LV++GDT +L+T T         +N     +T  Y     + 
Sbjct: 15  RELTVETGQFAKQANGAVLVRYGDTAVLSTVT----ASKEPKNLNFFPLTVNYEERLYAA 70

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G      +KRE   GR   ++    R+I R +R +         Q+I     +  +  + 
Sbjct: 71  GKIPGGFIKRE---GRPSEKAILASRLIDRPIRPLFPDGFRNEVQVISIVMSVDQNCSSE 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ G+ +AL                     G +A ++ G   G  I++    +    D
Sbjct: 128 MAAMIGSSLALS-------------ISDIPFDGPIAGVTVGRKDGELIINPTTEQLEESD 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           +D     T    I  V+  A+     ++     +    D I  L+  Q++V+
Sbjct: 175 IDLVVAGTKDA-INMVEAGADEVP--EETMLEAIMYGHDEIKRLVAFQEEVV 223


>gi|262274879|ref|ZP_06052690.1| polyribonucleotide nucleotidyltransferase [Grimontia hollisae CIP
           101886]
 gi|262221442|gb|EEY72756.1| polyribonucleotide nucleotidyltransferase [Grimontia hollisae CIP
           101886]
          Length = 709

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 97/247 (39%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +    I +   G  T 
Sbjct: 314 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDEITGERTD 373

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R + +V+         + +  +
Sbjct: 374 NFLFHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSQEEFPYTVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G+ +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGSSLALMDAGV-------------PIKKSVAGIAMGLVKEGDDFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     TD G +  +Q   +    +++     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTDDG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILNV 535

Query: 234 QKDVISN 240
               IS+
Sbjct: 536 MDQAISS 542



 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 72/228 (31%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +V   DT +  +   +    E    +     +   T   G +P 
Sbjct: 15  VTLETGVMARQATAAVMVSMDDTSVFVSVVGKKDAVEGQDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +         Q+I     +  +      
Sbjct: 74  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDHFKNEVQVIATVVSVNPNVNPDIV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G   AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGTSAALSISGI-------------PFNGPIGAARVGYINDELVLNPSNKELEESRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD+  ++     +E    S++     +    D+   +I   K+
Sbjct: 176 LVVAGTDNAVLMV---ESEADRLSEEQMLQAVVFGHDQQQVVINAIKE 220


>gi|260175214|ref|ZP_05761626.1| polynucleotide phosphorylase/polyadenylase [Bacteroides sp. D2]
 gi|315923445|ref|ZP_07919685.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D2]
 gi|313697320|gb|EFS34155.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D2]
          Length = 708

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 90/250 (36%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR+  ++R I           GS +   G+T  LT+ TL  K+   I +        
Sbjct: 319 RLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVLEHGKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +         + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNPGEEKY 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     LN AK+    ++
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILERALNQAKEGRMHIL 538

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 539 GKITETIAEP 548



 Score = 92.5 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 34/245 (13%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHG 57
             GR       I+L      K A+GS +++ G+T LL T    ++ VP         ++ 
Sbjct: 12  PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
              A +G  P   G   KRE   GR         R++ RALR +   +     ++ ++  
Sbjct: 66  EKFAAFGRFP---GGFTKRE---GRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNII 117

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +  ADG           V + D L  +   +          G ++ +    + G  +++ 
Sbjct: 118 LFSADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINP 166

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            + +    D+D     T   +I+ V+G  E    S+      + +A + I    K Q + 
Sbjct: 167 TFEQLEKADMDLMVAATYE-NIMMVEG--EMHEVSEAELLEAMKVAHEAIKVHCKAQME- 222

Query: 238 ISNEV 242
           ++ EV
Sbjct: 223 LTEEV 227


>gi|74146647|dbj|BAE41329.1| unnamed protein product [Mus musculus]
          Length = 257

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 89/256 (34%), Gaps = 23/256 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P  +     G++  
Sbjct: 4   RPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-VDAPDRGYVVP 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQE-IQRMIGRALRSVVDLSAL----GSRQIIIDC 116
              + P  +     R    G +   + + I  ++  +   V+    L    G    ++ C
Sbjct: 63  NVDLPPLCSS--RFRTGPPGEEAQVTSQFIADVVDNS--QVIKKEDLCISPGKLAWVLYC 118

Query: 117 DV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAIS 165
           D+  +  DG    A       AL +             + + + K +    ++ +  A S
Sbjct: 119 DLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRTNPVATS 178

Query: 166 CGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
             +      IVD    E+         V  + G +  +      +  +       ++ A 
Sbjct: 179 FAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPG-GSGLTGAKLQDCMSRAV 237

Query: 225 DRIADLIKLQKDVISN 240
            R  ++ KL  +VI +
Sbjct: 238 TRHKEVSKLLDEVIQS 253


>gi|149177150|ref|ZP_01855757.1| polynucleotide phosphorylase/polyadenylase [Planctomyces maris DSM
           8797]
 gi|148844042|gb|EDL58398.1| polynucleotide phosphorylase/polyadenylase [Planctomyces maris DSM
           8797]
          Length = 711

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 87/248 (35%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           RL GR  + +R+++          GS +   G+T  L T TL         +     +  
Sbjct: 315 RLDGRAPDVLRDVTCETGALPRVHGSAVFTRGETQSLATVTLGTSRDKQRVDGLFEEELQ 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  R++  V+         I +  D
Sbjct: 375 QFMLHYYFPSFSVGECRPIRGPGRREIGHGC----LAERSVLPVLPNEEDFPYTIRVISD 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           +++++G +  A++  A +AL D                 L+  VA IS G++        
Sbjct: 431 ILESNGSSSMASVCSATLALMDAGV-------------PLRQPVAGISIGLVTKGKEYKI 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++   A L  AK    +L++ 
Sbjct: 478 LTDIIGDEDHFCDMDFKVAGTQKG-ITGIQLDLKNDGINEEIIKATLEQAKKARLELLRT 536

Query: 234 QKDVISNE 241
               I   
Sbjct: 537 MLTAIRRP 544



 Score = 82.4 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 85/229 (37%), Gaps = 28/229 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++SLT   ++K A G+ LV++G+T +   A        +  +     +    A  G  P 
Sbjct: 13  KLSLTTGQLAKQAAGAVLVQYGETVVFVAAATGPGRPGIDFFPLTVDYRERAAASGKFP- 71

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR   +     R+  R +R +         QI  +             
Sbjct: 72  --GGFLKRE---GRPTTKEILTARLTDRPIRPLFPKGFHDELQIQSNVMSCDGINEPDVL 126

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           +I GA  AL                    +G + A+  G + G  IV  +   +   + D
Sbjct: 127 SINGASAALC-------------LSPVPFQGPIGAVRIGRIDGELIVFPN--HEQIAEGD 171

Query: 189 ANFVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            + ++  +   ++ ++G   +    +D     + LA   +A + KLQ +
Sbjct: 172 LDLIVAGTIESVLMIEGFGNQIP--EDEMLEAIMLAHTELAKICKLQLE 218


>gi|269137767|ref|YP_003294467.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda
           EIB202]
 gi|267983427|gb|ACY83256.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda
           EIB202]
 gi|304557824|gb|ADM40488.1| Polyribonucleotide nucleotidyltransferase [Edwardsiella tarda
           FL6-60]
          Length = 707

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 95/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 315 RIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELTGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 375 RFLLHYNFPPYSVGETGMMGSPKRREIGHG----RLAKRGVLAVMPSQDAFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEQDNFVV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G +  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVIS 239
            +  I+
Sbjct: 537 MEQAIN 542



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 75/234 (32%), Gaps = 28/234 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   +  + A  + +V   DT +  T        E    +     +       G  P 
Sbjct: 16  VTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLTVNYQERAYAAGRFP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR G       R+I R +R +     L   Q++     +         
Sbjct: 75  --GGFFRRE---GRPGEGETLTARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQVSPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTMDELKQSRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                TD+  ++     +E    S+D     +    D+   +I+  K  ++ EV
Sbjct: 177 LVVAGTDNAVLMV---ESEADLLSEDQMLGAVVFGHDQQQVVIENIK-ALAAEV 226


>gi|163796758|ref|ZP_02190716.1| Polyribonucleotide nucleotidyltransferase [alpha proteobacterium
           BAL199]
 gi|159178012|gb|EDP62559.1| Polyribonucleotide nucleotidyltransferase [alpha proteobacterium
           BAL199]
          Length = 684

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I     +     GS L   G+T  L   TL       I +   G    
Sbjct: 291 RIDGRDTKTVRPIVAEVGILPRTHGSALFTRGETQALVVTTLGTGQDEQIVDALDGEYRE 350

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA R ++         + +  +
Sbjct: 351 NFMLHYNFPPYSVGEAGR----MGSPGRREIGHGKLAWRATRPLMPTKDAFPYTVRVVSE 406

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +A+ D    +        +  + +G   A+         + D+
Sbjct: 407 ITESNGSSSMATVCGTSLAMMDAGVPLPRPIAGIAMGLIKEGEQFAV---------LSDI 457

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     TD G I  +Q   +  + +++     L  A+D    ++      
Sbjct: 458 LGDEDHLGDMDFKVAGTDKG-ITALQMDIKITSITKEIMDVALGQARDGRLHILGEMAKA 516

Query: 238 ISN 240
           ++N
Sbjct: 517 LTN 519



 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 80/222 (36%), Gaps = 34/222 (15%)

Query: 22  KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKRE 77
           + A+G+ + ++GDT +L T     T  + +  +  +  +   T   G +P   G   KRE
Sbjct: 3   RQADGAVVARYGDTVVLCTVVAAKTPRQGIDFFPLSVHYQEKTYSAGKIP---GGFFKRE 59

Query: 78  AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTRTAAITGAWV 135
              GR   +     R+I R +R +         Q+I  C V+  D        A+ G   
Sbjct: 60  ---GRPTEKEVLTSRLIDRPIRPLFVKGFKNETQVI--CTVLAHDLENDPDVVAMVGTSA 114

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
           AL                     G +A    G   G  +++    +  T D+D     T 
Sbjct: 115 ALC-------------ISGVPFLGPIAGCRVGYTNGEYVLNPLMEDAKTSDLDLMVAGTQ 161

Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKL 233
            G ++    ++E    +++     +    +     I  +I+L
Sbjct: 162 EGVLMVESMASE---LTEEVMLGAVTFGHESFQPVIQAIIEL 200


>gi|123440817|ref|YP_001004808.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|332160083|ref|YP_004296660.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|187611341|sp|A1JIX3|PNP_YERE8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33332421|gb|AAQ11418.1| PNPase [Yersinia enterocolitica]
 gi|122087778|emb|CAL10564.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|318607357|emb|CBY28855.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664313|gb|ADZ40957.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862022|emb|CBX72189.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
           W22703]
          Length = 706

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   +     + +  +
Sbjct: 375 SFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSPSEFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDENFVV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISTP 544



 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 70/212 (33%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           +++   +  + A  + +V   DT +  T   +         +     +   T   G +P 
Sbjct: 16  VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR         R+I R +R +   S L   Q+I     +         
Sbjct: 75  --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +G ++ V+  +E    S+D     +
Sbjct: 177 LVVAGT-AGAVLMVE--SEADILSEDQMLGAV 205


>gi|8928245|sp|O34275|PNP_YEREN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 706

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   +     + +  +
Sbjct: 375 SFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSPSEFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDENFVV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISTP 544



 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 70/212 (33%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           +++   +  + A  + +V   DT +  T   +         +     +   T   G +P 
Sbjct: 16  VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR         R+I R +R +   S L   Q+I     +         
Sbjct: 75  --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +G ++ V+  +E    S+D     +
Sbjct: 177 LVVAGT-AGAVLMVE--SEADILSEDQMLGAV 205


>gi|238918428|ref|YP_002931942.1| polynucleotide phosphorylase/polyadenylase [Edwardsiella ictaluri
           93-146]
 gi|259534121|sp|C5BFC1|PNP_EDWI9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|238867996|gb|ACR67707.1| polyribonucleotide nucleotidyltransferase [Edwardsiella ictaluri
           93-146]
          Length = 707

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 95/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 315 RIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 375 RFLLHYNFPPYSVGETGMMGSPKRREIGHG----RLAKRGVLAVMPSQDAFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEQDNFVV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G +  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVIS 239
            +  I+
Sbjct: 537 MEQAIN 542



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 73/234 (31%), Gaps = 28/234 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   +  + A  + +V   DT +  T        E    +     +       G  P 
Sbjct: 16  VTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLTVNYQERAYAAGRFP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR G       R+I R +R +     L   Q++     +         
Sbjct: 75  --GGFFRRE---GRPGEGETLTARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQVSPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKQSRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                TD+  ++     +E    S+D     +    ++   ++      ++ EV
Sbjct: 177 LVVAGTDNAVLMV---ESEADLLSEDQMLGAVVFGHEQ-QQIVIENIKALAAEV 226


>gi|139439612|ref|ZP_01773025.1| Hypothetical protein COLAER_02052 [Collinsella aerofaciens ATCC
           25986]
 gi|133774953|gb|EBA38773.1| Hypothetical protein COLAER_02052 [Collinsella aerofaciens ATCC
           25986]
          Length = 748

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 95/248 (38%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE---EKVPM-WIRNTKHG 57
           R+ GR  +++R I +         GS L + G T +L+  +L    E   +  I  T+  
Sbjct: 319 RVDGRAADEIRPIMVKDNYLPLVHGSGLFQRGQTQVLSVLSLGMLNEGQRLDTIEPTEGK 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P  TG   +  +   R+ G       +  RAL  V+         I +  +
Sbjct: 379 RYMHHYNFPPFCTGETGRMGSPKRREIGHG----NLAERALLPVLPDENEFPYAIRVVSE 434

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           V++++G +  A+  G+ +AL D                 +K  V+ I+ G++        
Sbjct: 435 VMESNGSSSMASTCGSTLALMD-------------GGVPIKRPVSGIAMGLIQEEGKTVV 481

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    + D     L  AK+  A +++ 
Sbjct: 482 LSDIQGLEDFLGDMDFKVTGTTEG-ITALQMDNKATGLTFDILARALQQAKEGRAFILQK 540

Query: 234 QKDVISNE 241
             DVI   
Sbjct: 541 MLDVIPEP 548



 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 79/224 (35%), Gaps = 27/224 (12%)

Query: 22  KYAEGSCLVKFGDTHLL--TTATLEEK-VPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78
           K A G+CLVK GDT +L     + E K    +             G +P   G  +KRE 
Sbjct: 24  KQATGACLVKQGDTTMLDTVVVSKERKNYDFFPLTVDFNEKMYAAGRIP---GGYLKRE- 79

Query: 79  VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138
             GR   ++    RMI R +R            I+               ++    V   
Sbjct: 80  --GRPSEKATLTARMIDRPIRPSFPEGFRNEVHIV-------------ATSLVADQVNPF 124

Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCG--MLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
           D +  M             +G +A +  G  +  G  IV+  Y E    D+D     +  
Sbjct: 125 DVINVMGASLAMTLGGVPFEGPLACVRIGRNVETGEFIVNPTYEERENSDLDLELGGSAD 184

Query: 197 GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             I  V+  AE    S+D   A +   ++ +A   + Q + ++ 
Sbjct: 185 F-ISMVEAGAEE--ISEDDMLAAMKFGQEALAAFCQAQVEFVAE 225


>gi|327396265|dbj|BAK13687.1| polyribonucleotide nucleotidyltransferase Pnp [Pantoea ananatis
           AJ13355]
          Length = 715

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 321 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTRDAQNLDELMGERTD 380

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 381 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKAEDFPYTVRVVSE 436

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 437 ITESNGSSSMASVCGASLALMDAGV-------------PIKASVAGIAMGLVKEDDKFVV 483

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 484 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 542

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 543 MEQAISTP 550



 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 68/212 (32%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 22  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKP---GQDFFPLTVNYQERTYAAGR 78

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 79  IPGSFFRRE---GRPSEGETLISRLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVHPDIV 135

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E  T  +D
Sbjct: 136 AMIGASAALALSGL-------------PFNGPIGAARVGYINDQYVLNPTADELKTSRLD 182

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +  ++     +E    S++     +
Sbjct: 183 LVVAGTQNAVLMV---ESEAEILSEEQMLGAV 211


>gi|256830187|ref|YP_003158915.1| polyribonucleotide nucleotidyltransferase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579363|gb|ACU90499.1| Polyribonucleotide nucleotidyltransferase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 736

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 90/246 (36%), Gaps = 27/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR    +R + +         GS +   G+T  L T TL    +E+    +     
Sbjct: 318 IRIDGRDLTTVRPLIMEVGFLPRTHGSAIFTRGETKALCTCTLGSTRDEQRIETLAGDTS 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      A   R+ G       +  RAL  V+         I +  
Sbjct: 378 RRFLMHYNFPPYSVGEARMLRAPGRREIGHG----ALSERALNPVLPEPDAFPFTIRVVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           D+++++G +  A++ G  +AL D                 +K  +A I+ G++       
Sbjct: 434 DIMESNGSSSMASVCGGTLALMDAGV-------------PIKTPIAGIAMGLIKEGDEYL 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     +  G +  +Q   + A    +     L+ AKD    ++ 
Sbjct: 481 VLTDILGDEDHLGDMDFKVAGSRDG-VTSIQMDIKIAGIPAEVMQKALHQAKDARVHILD 539

Query: 233 LQKDVI 238
            Q + +
Sbjct: 540 -QMEAL 544



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 92/239 (38%), Gaps = 36/239 (15%)

Query: 13  EISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-GMLPRST 70
           EI +        A G+  V++GDT +L TAT         R      +T  Y  ML  + 
Sbjct: 17  EIIIEHGKLALQASGAVTVQWGDTVVLVTAT----HQALDRVVDFLPLTCNYQEMLYSAG 72

Query: 71  ---GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              GN  +RE   GR         R++ R +R +       + +I +   VI +D   R+
Sbjct: 73  RVPGNYFRREV--GRPSEHETLTSRLMDRPIRPLFPKG--CTNEIQVIATVISSD-KERS 127

Query: 128 A---AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
           A   A+ GA  ALH                    G +AAI  G   G  +++    E   
Sbjct: 128 ADILAMLGASTALH-------------ISEIPFAGPIAAIRVGYRDGKFLLNPTATE--L 172

Query: 185 IDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                N ++  S   +V V+G A+    S+D     +     ++  L+  Q++ +  E+
Sbjct: 173 ATSQLNMILAGSRDAVVMVEGGAQ--FLSEDIMTEAVAWGHAQLGPLLDAQEE-LRKEL 228


>gi|86148613|ref|ZP_01066896.1| putative polyribonucleotide nucleotidyltransferase [Vibrio sp.
           MED222]
 gi|85833604|gb|EAQ51779.1| putative polyribonucleotide nucleotidyltransferase [Vibrio sp.
           MED222]
          Length = 706

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 96/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   K  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSLMGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R +++V+         + +  +
Sbjct: 376 NFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIQAVMPSVDEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G I  +Q   +    +++     LN A+     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNAG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537

Query: 234 QKDVISN 240
             + IS 
Sbjct: 538 MDEAISG 544



 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + +    DT +  +   +++    +       +T  Y     + G 
Sbjct: 17  VTLETGVMARQATAAVMATMDDTSVFVSVVAKKEA---VAGQDFFPLTVNYQERTYAAGK 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR         R+I R +R +   +     Q+I     I  D      
Sbjct: 74  IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSINPDVNPDMI 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            +     AL                     G + A   G + G  +++    E     +D
Sbjct: 131 TMIATSAALAISGA-------------PFNGPIGAARVGHIDGELVLNPSNTELENSKLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T+ G ++ V+  +E    S++   + +    D+   +IK   +
Sbjct: 178 LVVSGTE-GAVLMVE--SEADNLSEEEMLSAVVYGHDQQQVVIKAINE 222


>gi|299753339|ref|XP_001833208.2| mRNA transport regulator 3 [Coprinopsis cinerea okayama7#130]
 gi|298410256|gb|EAU88481.2| mRNA transport regulator 3 [Coprinopsis cinerea okayama7#130]
          Length = 259

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 78/244 (31%), Gaps = 26/244 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R    +R I L   + + A GS  ++ G T +        +    +     G +  
Sbjct: 38  RQD-RLPLAIRPIFLQPGLIEQANGSAYIETGKTKIACAIYGPRQSKN-VAFHDKGRLNV 95

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           E    P S     KR A       RS  I   I +A+   V L  L    + +   V++ 
Sbjct: 96  ELKFAPFSCP---KRRAPIRDAEDRS--IAMAIHQAILPSVRLETLPKSTVDVFITVLEE 150

Query: 122 DG--GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
           DG  G   A    A  AL D                 + G VA+ S  ++     +D   
Sbjct: 151 DGIEGCVAAGSVAASAALVDAGI-------------EVFGIVASTSAAVIGEEIWLDPSE 197

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            E S          M     I  +  + E A    D     + + + +  D+  +  + +
Sbjct: 198 QESSQSKGTFVLATMPALNTITSIWQNGEMAP---DQVLKAMEICEKQCVDIHTVVAERL 254

Query: 239 SNEV 242
              +
Sbjct: 255 RETL 258


>gi|238787597|ref|ZP_04631395.1| Polyribonucleotide nucleotidyltransferase [Yersinia frederiksenii
           ATCC 33641]
 gi|238724384|gb|EEQ16026.1| Polyribonucleotide nucleotidyltransferase [Yersinia frederiksenii
           ATCC 33641]
          Length = 706

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   +     + +  +
Sbjct: 375 SFLLHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVMAVMPSPSEFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDENFVV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISTP 544



 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 67/212 (31%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           +++   +  + A  + +V   DT +  T   +         +     +   T   G +P 
Sbjct: 16  VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR         R+I R +R +   S L   Q+I     +         
Sbjct: 75  --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +  ++     +E    S+D     +
Sbjct: 177 LVVAGTAAAVLMV---ESEADILSEDQMLGAV 205


>gi|311266149|ref|XP_003130982.1| PREDICTED: exosome complex exonuclease RRP43-like [Sus scrofa]
          Length = 276

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 87/257 (33%), Gaps = 25/257 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P        G+I  
Sbjct: 23  RPDGRELGEFRTTTVNVGSIGTADGSSLVKLGNTTVICGIKAEFGAPP-TDAPDKGYIVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115
              + P  +         SG  G  +Q   + I   +    ++    L    G    ++ 
Sbjct: 82  NVDLSPLCSW-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLAWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
           CD+  +  DG    A       AL +             + + + K +    ++ H  A 
Sbjct: 137 CDLICLNHDGNILDACTFALLAALKNVQLPEVNINEETALAEVNLKKKSYLNIRTHPVAT 196

Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           S  +      IVD    E+         VM + G +  +      +  +       ++ A
Sbjct: 197 SFAVFDDTLLIVDPTEEEEHLATGTLTVVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRA 255

Query: 224 KDRIADLIKLQKDVISN 240
             R  ++ KL  +V  +
Sbjct: 256 VTRHKEVKKLMDEVFKS 272


>gi|218710441|ref|YP_002418062.1| polynucleotide phosphorylase/polyadenylase [Vibrio splendidus
           LGP32]
 gi|254782746|sp|B7VJH3|PNP_VIBSL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218323460|emb|CAV19637.1| polyribonucleotide nucleotidyltransferase [Vibrio splendidus LGP32]
          Length = 706

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 96/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   K  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSLMGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R +++V+         + +  +
Sbjct: 376 NFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIQAVMPSVDEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G I  +Q   +    +++     LN A+     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNAG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537

Query: 234 QKDVISN 240
             + IS 
Sbjct: 538 MDEAISG 544



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + +    DT +  +   +++    +       +T  Y     + G 
Sbjct: 17  VTLETGVMARQATAAVMATMDDTSVFVSVVAKKEA---VAGQDFFPLTVNYQERTYAAGK 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR         R+I R +R +   +     Q+I     I  D      
Sbjct: 74  IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSINPDVNPDMI 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            +     AL                     G + A   G + G  +++    E     +D
Sbjct: 131 TMIATSAALAISGA-------------PFNGPIGAARVGHIDGELVLNPSNTELENSKLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T+ G ++ V+  +E    S++   + +    D+   +IK   +
Sbjct: 178 LVVSGTE-GAVLMVE--SEADNLSEEEMLSAVVYGHDQQQVVIKAINE 222


>gi|90412489|ref|ZP_01220492.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium
           profundum 3TCK]
 gi|90326526|gb|EAS42932.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium
           profundum 3TCK]
          Length = 707

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 96/248 (38%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +    I ++  G    
Sbjct: 314 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSIMGEKKD 373

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R + +V+         + +  +
Sbjct: 374 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVEEFPYTVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     TD G I  +Q   +    +++     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTDDG-ITALQMDIKIEGITKEIMQIALNQAKGARKHILSV 535

Query: 234 QKDVISNE 241
             D I + 
Sbjct: 536 MDDAIGSH 543



 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 69/234 (29%), Gaps = 35/234 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +    DT +  +   +    E    +     +   T   G +P 
Sbjct: 15  VTLETGVMARQATAAVMASMDDTSVFVSVVGKKAAVEGQDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +   +     Q+I     +  D      
Sbjct: 74  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSVNPDVNPDMI 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            +     AL                     G + A   G +    +++    E     +D
Sbjct: 129 TMIATSAALA-------------ISGLPFNGPIGAARVGFVNDQFVLNPSNTELEESRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                T    ++     +E    S++     +    D        Q+ V+ N +
Sbjct: 176 LVVSGTKDAVLMV---ESEADRLSEETMLQAVVYGHD--------QQQVVINAI 218


>gi|47210411|emb|CAF91679.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 276

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 82/242 (33%), Gaps = 29/242 (11%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWITAEYG 64
           R++  +R + +   +   A+GS  ++ G T LL       +       + + G +TA+  
Sbjct: 40  REQADVRPVFVRCGLGSQAKGSAYMEAGATKLLCCVYGPRETERKDETDMRCGRLTADVR 99

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
             P S   R     + G Q     +   M+  +L+  V L      QI +   V++  G 
Sbjct: 100 FAPFSCPERGS--WIQGSQDR---DFSSMLLESLQPAVCLHRYPRSQIEVHLVVLENGGS 154

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+T A VAL D    M D              V   S        + D  Y E+S 
Sbjct: 155 VLAHAVTCASVALADAGIQMYDL-------------VLGCSLRQDGASFVADPTYAEESG 201

Query: 185 IDVD-------ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
                          +     I  ++   E    ++D   A +    +    L  + + V
Sbjct: 202 RAGPGGPRGGLTVAFLPSLNQISGLRSDGE---MAEDTLRAGVRTCIEGCYKLYPVVRQV 258

Query: 238 IS 239
           +S
Sbjct: 259 LS 260


>gi|37589850|gb|AAH59089.1| Exosome component 8 [Mus musculus]
          Length = 276

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 89/256 (34%), Gaps = 23/256 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P  +     G++  
Sbjct: 23  RPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-VDAPDRGYVVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQE-IQRMIGRALRSVVDLSAL----GSRQIIIDC 116
              + P  +     R    G +   + + I  ++  +   V+    L    G    ++ C
Sbjct: 82  NVDLPPLCSS--RFRTGPPGEEAQVTSQFIADVVDNS--QVIKKEDLCISPGKLAWVLYC 137

Query: 117 DV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAIS 165
           D+  +  DG    A       AL +             + + + K +    ++ +  A S
Sbjct: 138 DLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRTNPVAAS 197

Query: 166 CGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
             +      IVD    E+         V  + G +  +      +  +       ++ A 
Sbjct: 198 FAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPG-GSGLTGAKLQDCMSRAV 256

Query: 225 DRIADLIKLQKDVISN 240
            R  ++ KL  +VI +
Sbjct: 257 TRHKEVSKLLDEVIQS 272


>gi|37528344|ref|NP_931689.1| polynucleotide phosphorylase/polyadenylase [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|81418115|sp|Q7MYZ0|PNP_PHOLL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|36787782|emb|CAE16897.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) (PNPase) (CAP87K) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 709

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 101/248 (40%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +    I +   G  T 
Sbjct: 315 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 375 RFLLHYNFPPYSVGETGMMGSPKRREIGHG----RLAKRGVAAVMPKANEFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDDNFVV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSCEG-ISALQMDIKIEGITREIMQIALNQAKGARLHILSV 536

Query: 234 QKDVISNE 241
            +  I++ 
Sbjct: 537 MEQAINSP 544



 Score = 66.3 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 71/212 (33%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           +++   +  + A  + +V   DT +  T   ++KV           +T  Y     + G 
Sbjct: 16  VAIETGMMARQATAAVMVNMDDTAVFVTVVGQKKV---KEGQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR G     + R+I R LR +     L   QI+     +         
Sbjct: 73  VPGSFFRRE---GRPGEGETLVARLIDRPLRPLFPDGFLNEVQIVATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA   L                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAVLALSGI-------------PFNGPIGAARVGYINDQYVLNPTSDELKNSRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +G ++ V+  +E    +++     +
Sbjct: 177 LVVSGT-AGAVLMVE--SEADILTEEQMLGAV 205


>gi|84387281|ref|ZP_00990302.1| polyribonucleotide nucleotidyltransferase [Vibrio splendidus 12B01]
 gi|84377928|gb|EAP94790.1| polyribonucleotide nucleotidyltransferase [Vibrio splendidus 12B01]
          Length = 706

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 96/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   K  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSLMGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R +++V+         + +  +
Sbjct: 376 NFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIQAVMPSVDEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G I  +Q   +    +++     LN A+     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNAG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537

Query: 234 QKDVISN 240
             + IS 
Sbjct: 538 MDEAISG 544



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + +    DT +  +   +++    +       +T  Y     + G 
Sbjct: 17  VTLETGVMARQATAAVMATMDDTSVFVSVVAKKEA---VAGQDFFPLTVNYQERTYAAGK 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR         R+I R +R +   +     Q+I     I  D      
Sbjct: 74  IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSINPDVNPDMI 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            +     AL                     G + A   G + G  +++    E     +D
Sbjct: 131 TMIATSAALAISGA-------------PFNGPIGAARVGHIDGELVLNPSNTELENSKLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T+ G ++ V+  +E    S++   + +    D+   +IK   +
Sbjct: 178 LVVSGTE-GAVLMVE--SEADNLSEEEMLSAVVYGHDQQQVVIKAINE 222


>gi|253682340|ref|ZP_04863137.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum D
           str. 1873]
 gi|253562052|gb|EES91504.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum D
           str. 1873]
          Length = 706

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 87/236 (36%), Gaps = 16/236 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R  GR  +++R +S    +     GS L   G T +++ ATL    E +V   I      
Sbjct: 312 RPDGRSFDEIRPLSAETSLLPRTHGSGLFSRGLTQVMSVATLGSVSEGQVLDGIDEETSK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G        + R+ G       +  +A+  ++         I +  +
Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPNRREIGHG----ALAEKAIEPLIPSEQEFPYAIRVVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A++ G+ +AL D    ++  +    +  V    ++           + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLVTSEDLS-------KEEILTDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
              ED   D+D     T+ G I  +Q   +    S D     +  A+     ++K+
Sbjct: 481 QGLEDFFGDMDFKVAGTEKG-ITAIQVDTKIEGLSNDCIKKAIGDARTARLTILKV 535



 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 78/234 (33%), Gaps = 27/234 (11%)

Query: 12  REISLTRRVSKYAEGSCL-VKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R++              L + +GDT +L         +E +  +  + ++       G +
Sbjct: 12  RKLKGEFGKLGMLSDCALNISYGDTVVLVNVNASPAPKEGIDFFPLSIEYQERLYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   R+    R I R LR +         Q++     +  D    
Sbjct: 72  P---GGFIKRE---GRPSDRAILNARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDNLPN 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA +AL                S      V  +S G++ G  IV+    +     
Sbjct: 126 ILAMNGASLALC-------------LSSIPFTKPVGTVSVGLIDGEFIVNPTSKQREESI 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +D     T    ++ ++   E     +D  +  +    +    +   Q+ V+  
Sbjct: 173 LDLTVCATKE-RVMMIEAGGEEIP--EDVMYDAIMFGFEECKKIADFQEKVMEQ 223


>gi|291616014|ref|YP_003518756.1| Pnp [Pantoea ananatis LMG 20103]
 gi|291151044|gb|ADD75628.1| Pnp [Pantoea ananatis LMG 20103]
          Length = 757

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 363 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTRDAQNLDELMGERTD 422

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 423 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKAEDFPYTVRVVSE 478

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 479 ITESNGSSSMASVCGASLALMDAGV-------------PIKASVAGIAMGLVKEDDKFVV 525

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 526 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 584

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 585 MEQAISTP 592



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 68/212 (32%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 64  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKP---GQDFFPLTVNYQERTYAAGR 120

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 121 IPGSFFRRE---GRPSEGETLISRLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVHPDIV 177

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E  T  +D
Sbjct: 178 AMIGASAALALSGL-------------PFNGPIGAARVGYINDQYVLNPTADELKTSRLD 224

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +  ++     +E    S++     +
Sbjct: 225 LVVAGTQNAVLMV---ESEAEILSEEQMLGAV 253


>gi|91792379|ref|YP_562030.1| polynucleotide phosphorylase/polyadenylase [Shewanella
           denitrificans OS217]
 gi|91714381|gb|ABE54307.1| Polyribonucleotide nucleotidyltransferase [Shewanella denitrificans
           OS217]
          Length = 701

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 90/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+ + +R +++   V     GS L   G+T  L T TL  +        I   +  
Sbjct: 317 RIDGREPDMIRALNVLAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKIDSIMGERTN 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      ++  R + +V+  +      I +  +
Sbjct: 377 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGMNAVMPTAEEFPYSIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     L  A      ++ +
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMDIALQQAYGARVHILNV 538

Query: 234 QKDVISNE 241
               I   
Sbjct: 539 MDQAIGTH 546



 Score = 71.7 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 76/234 (32%), Gaps = 35/234 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A+ + L   GDT +L T   ++        +     +   T   G +P 
Sbjct: 18  VTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTVNYQEKTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+II    +         
Sbjct: 77  --GGFFKRE---GRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++     D      
Sbjct: 132 SMIGTSAALAISGI-------------PFSGPLGAARVGYINGEYLLNPTV--DQLATSS 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            N V+  +   V +  S E    +++     +    D        Q+ V+ + +
Sbjct: 177 LNLVVAGTKAAVLMVES-EAKALAEEIMLGAVTYGHD--------QQQVVVDAI 221


>gi|316971903|gb|EFV55625.1| polyribonucleotide nucleotidyltransferase [Trichinella spiralis]
          Length = 1172

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 79/217 (36%), Gaps = 32/217 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-------- 53
           R  GR  +++R I  +  +     GS L + G T ++ + T + +   +  +        
Sbjct: 728 RRDGRTLDELRPIDCSVDLYPSLHGSALFQRGQTQVMCSLTFDSRQAAFRGDVFSLLNSG 787

Query: 54  --TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
             TK       Y     +T        +  R+ G       +  +ALR VV         
Sbjct: 788 GITKEKKFMFHYNFASFATNELSSARGIGRRELGHG----ALAEKALRPVVPSDF--PFT 841

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
           I +  DV++++G +  A++    +AL D                  K  V+ ++ G++  
Sbjct: 842 IRLAADVLESNGSSSMASVCAGSLALMDAGV-------------PTKSSVSGVAIGLMSK 888

Query: 172 Y---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
                + D+   ED   D+D     T +G +  +Q  
Sbjct: 889 QDYRLLTDIAGIEDFFGDMDFKIAFTSNGEVTAIQLD 925



 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 23/230 (10%)

Query: 13  EISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEK--VPMWIRNTKHGWITAEYGMLPRS 69
            + L        A+GS + K G T ++ T   + +  V   +       +T +Y     +
Sbjct: 414 PMILETGQLARLADGSAVAKMGATAVMATVVAKSRSAVQPMMFMP----LTVDYRSRAAA 469

Query: 70  TGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
            G R+    +    G    EI   RMI R+LR           Q+      ++AD     
Sbjct: 470 VG-RIPTNFLRREIGASDSEILTARMIDRSLRPAFGRDCYVDCQVSCSLLSLEADA---- 524

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
              TGA     D L      +     + V  G VA      +   P+++    +     +
Sbjct: 525 ---TGA-----DVLAVNAASAALACSNVVWNGPVACARVCWVDSRPVLNPSRQQLEMSTL 576

Query: 188 DANFVMTDSGHIVEVQG-SAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +    + +   IV V+       + S D  +A  +LA D     +   K 
Sbjct: 577 NLVLSVGEHRRIVMVEAGGGSSGSCSLDQLYACCDLAVDSAQRTLDAIKQ 626


>gi|331212367|ref|XP_003307453.1| exosome complex exonuclease RRP41 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309297856|gb|EFP74447.1| exosome complex exonuclease RRP41 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 308

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 92/264 (34%), Gaps = 47/264 (17%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA----EGSCLVKFGDTHLLTTATLEEK-------VPM 49
           +RL  R+  ++R  S+   +        +    V+ G T L+   +           V  
Sbjct: 28  LRLDNRRPYELR--SIDFNILPNPPVGCDSVARVEHGLTKLIGFVSGPRDSVESNRTVAT 85

Query: 50  WIRNT---------------KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMI 94
            + N                ++G I+      P S+ +R K     GR   +  ++ + I
Sbjct: 86  TLGNPTSNSASSNLNNNNNNQNGSISVHISTTPFSSIDRKK----IGRSDKKFADLAQAI 141

Query: 95  GRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS 154
                 VV L       I I   V+Q DG    AAI    +AL      + D        
Sbjct: 142 QNTFEPVVMLHLYPRSTIDIYVQVLQQDGALLQAAINVTTLALIGAGVSISDY------- 194

Query: 155 QVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
            VL   V A+S       P++DL   E + +      V+  +  +  +Q        +  
Sbjct: 195 -VLSVSVGALSTP---SCPLLDLTNSEQTDLPNLTIAVLPRTQKLTLLQLDTRINILT-- 248

Query: 215 HFFAMLNLAKDRIADL-IKLQKDV 237
            F ++L +  +    L +++ ++V
Sbjct: 249 -FESLLEIGLEACLVLQLEMDREV 271


>gi|307249785|ref|ZP_07531763.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858200|gb|EFM90278.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 715

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 92/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   K  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHG----RLAKRGVLAVMPTAEEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKGARMHILSV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 75/232 (32%), Gaps = 27/232 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERTYAAGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+I     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISHLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                TD   ++     +E    S++   + +     +   +I+  K+ +  
Sbjct: 176 LVVAGTDKAVLMV---ESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKE 224


>gi|34540549|ref|NP_905028.1| polynucleotide phosphorylase/polyadenylase [Porphyromonas
           gingivalis W83]
 gi|81417555|sp|Q7MW79|PNP_PORGI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|34396862|gb|AAQ65927.1| polyribonucleotide nucleotidyltransferase [Porphyromonas gingivalis
           W83]
          Length = 743

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 89/244 (36%), Gaps = 24/244 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           RL GR+  ++R I +         GS +   G+T  LTT TL  K    + +    +   
Sbjct: 318 RLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVTLGTKSDEKLVDDVLNYTKE 377

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+ ++         + +  D
Sbjct: 378 RFLLHYNFPPFSTGEARPQRGVGRREIGHG----NLAHRALKRMIPTD--YPYVVRVISD 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176
           +++++G +  A +    +AL D    +    +   +          IS      Y I+ D
Sbjct: 432 ILESNGSSSMATVCAGTLALRDAGVQIRKPVSGIAMG--------LISENQGKNYAILSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIK 232
           +   ED   D+D     T  G I   Q   +    S +     L  AK      +  +++
Sbjct: 484 ILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILENALEQAKQGRLHILGKIME 542

Query: 233 LQKD 236
            Q +
Sbjct: 543 AQPE 546



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 81/227 (35%), Gaps = 21/227 (9%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWITAEYGMLPRS 69
           R I +      K A+G+  V  G+T LL T    ++  P             +Y  + R 
Sbjct: 15  RSIKIETGKLAKQADGAVTVTMGNTVLLATVCAAKDANPGCDFMPLQVEYKEKYSAIGRF 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   +RE   G+         R++ RALR +   +     ++ ++  +  ADG      
Sbjct: 75  PGGFTRRE---GKASDYEILTCRLVDRALRPLFPDN--YHAEVFVNVILFSADG------ 123

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
                  + D L  +   +          G ++ +    + G  IV+  + +    D+D 
Sbjct: 124 -----EDMPDALAGLAASAALAVSDIPFNGPISEVRVARVDGRYIVNPTFEQLERADIDL 178

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             V     +I+ V+G  E     +      + +A + I    K Q +
Sbjct: 179 -MVGATMDNIMMVEG--EMDEVQESEMLEGIRVAHEAIKVQCKAQLE 222


>gi|330830884|ref|YP_004393836.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii B565]
 gi|328806020|gb|AEB51219.1| Polyribonucleotide nucleotidyltransferase [Aeromonas veronii B565]
          Length = 715

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 93/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R +S+   +   A GS L   G+T  +  ATL  +        +   +  
Sbjct: 314 RIDGRDPEMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTERDAQNIDELTGNRAD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+  +A     + +  +
Sbjct: 374 RFMLHYNFPPYCVGETGMMGSPKRREIGHG----RLAKRGVAAVMPSAAEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G+ +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEEEGFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A+     ++K+
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTTEG-VTALQMDIKIEGITKEIMEIALKQARGARLHILKV 535

Query: 234 QKDVI 238
             + I
Sbjct: 536 MDEAI 540



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 75/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +V   DT +  T       +     +     +   T   G +P 
Sbjct: 15  VTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTVNYQERTYAAGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR       I R+I R +R +     L   Q++     +         
Sbjct: 74  --GGFFRRE---GRPSEGETLISRLIDRPIRPLFPEGFLNEVQVVATVMSVNPAVSPDIV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E    D+D
Sbjct: 129 AMIGASAALAISGI-------------PFGGPIGAARVGYMNGQYVLNPTTTELPQSDLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T +  ++     +E A  S++     +    +++  +I    +
Sbjct: 176 LVVAGTANAVLMV---ESEAAILSEEVMLGAVVYGHEQMQTVINAINE 220


>gi|187611313|sp|Q12QG9|PNP_SHEDO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 698

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 90/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+ + +R +++   V     GS L   G+T  L T TL  +        I   +  
Sbjct: 314 RIDGREPDMIRALNVLAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      ++  R + +V+  +      I +  +
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGMNAVMPTAEEFPYSIRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     L  A      ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMDIALQQAYGARVHILNV 535

Query: 234 QKDVISNE 241
               I   
Sbjct: 536 MDQAIGTH 543



 Score = 71.7 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 76/234 (32%), Gaps = 35/234 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A+ + L   GDT +L T   ++        +     +   T   G +P 
Sbjct: 15  VTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTVNYQEKTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+II    +         
Sbjct: 74  --GGFFKRE---GRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++     D      
Sbjct: 129 SMIGTSAALAISGI-------------PFSGPLGAARVGYINGEYLLNPTV--DQLATSS 173

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            N V+  +   V +  S E    +++     +    D        Q+ V+ + +
Sbjct: 174 LNLVVAGTKAAVLMVES-EAKALAEEIMLGAVTYGHD--------QQQVVVDAI 218


>gi|254510470|ref|ZP_05122537.1| 3' exoribonuclease family, domain 2, protein [Rhodobacteraceae
           bacterium KLH11]
 gi|221534181|gb|EEE37169.1| 3' exoribonuclease family, domain 2, protein [Rhodobacteraceae
           bacterium KLH11]
          Length = 716

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 91/244 (37%), Gaps = 19/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I     +     GS L   G+T  L   TL         +  HG   +
Sbjct: 318 RIDGRSTTDIRSIVAETSMLPRTHGSALFTRGETQALAVTTLGTGDDEQFIDALHGNFKS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+  +      I I  +
Sbjct: 378 NFLLHYNFPPYSVGEVGR----VGGPGRREIGHGKLAWRALQAVLPAATDFPYTIRIVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176
           + +++G +  A++ G  +++ D    ++       +  +L+             Y I+ D
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDD---------GNYAILSD 484

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T++G I  +Q   + A  + +     L  AKD    ++     
Sbjct: 485 ILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKALAQAKDGRMHILGEMGK 543

Query: 237 VISN 240
            +S 
Sbjct: 544 ALSE 547



 Score = 71.7 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 80/234 (34%), Gaps = 39/234 (16%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+GS +   G+T ++   T     +     +     +       G +P 
Sbjct: 16  LTLETGKVARQADGSVIATLGETSVMANVTFARAQKPGQDFFPLTVHYQEKYYAAGKVP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++ C V+  D      
Sbjct: 75  --GGFFKREA---RPTEKETLTARLIDRPIRPLFVDGF--KNEVLVMCTVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                    +G +A    G   G  +++     D   D
Sbjct: 128 IVAMIAASAALTISGA-------------PFRGPIAGARVGFEDGEYVLNPTV--DDMQD 172

Query: 187 VDAN-------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +  N        V      ++ V+  +E    S+      +  A ++I  +I L
Sbjct: 173 LRLNPEQRLDLVVAGTKDAVMMVE--SEAYELSEAEMLGAVTFAHEQIQPVIDL 224


>gi|322378832|ref|ZP_08053258.1| polynucleotide phosphorylase/polyadenylase [Helicobacter suis HS1]
 gi|322380127|ref|ZP_08054375.1| polynucleotide phosphorylase/polyadenylase [Helicobacter suis HS5]
 gi|321147432|gb|EFX42084.1| polynucleotide phosphorylase/polyadenylase [Helicobacter suis HS5]
 gi|321148756|gb|EFX43230.1| polynucleotide phosphorylase/polyadenylase [Helicobacter suis HS1]
          Length = 672

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 87/241 (36%), Gaps = 23/241 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM------WIRNTK 55
           R  GR   Q+R I +   +      S L + G T  L   TL  +         + +   
Sbjct: 302 RPDGRTLTQIRPIYIETNLLPACHSSVLFERGHTQALVACTLGSENDAKQGLGTYEKTPS 361

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P   G  +   A+S R+ G       +  +AL S +         I + 
Sbjct: 362 KERFMLHYNFPPFCVGEAMPMGALSRRELGHGH----LAQKALESTLPEQ---HPVIRLV 414

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A++    +AL      + D      +  +++G   AI         + 
Sbjct: 415 SEILESNGSSSMASVCAGSLALKAAGIDIRDLVAGVAMGLMVEGDKYAI---------LS 465

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T  G ++ +Q   + +    +    +L  AK     +++  +
Sbjct: 466 DISALEDMQGDMDFKIAGTHQG-VLAMQMDTKLSGICLEWLGEILKQAKQARTVILERMQ 524

Query: 236 D 236
           +
Sbjct: 525 E 525



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 70/216 (32%), Gaps = 38/216 (17%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV----K 75
           V+K A+ + L ++  T +L +  ++ +            ++ +Y     + G       +
Sbjct: 16  VAKTADSALLYRYKGTVILASVVVDRQHT----EADFLPLSVQYAQRAYAVGRFPSNFLR 71

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE   G+         R+I R+LR +         QI +           +  A+  A  
Sbjct: 72  RE---GKMDNFETLTSRLIDRSLRPLFPKGYTYPTQITLLVLSYDYQSDLQVCALNAASN 128

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
           AL+     ++   +  +L                 G          D+   +D   V   
Sbjct: 129 ALYLANIGVDTTIHAMRL----------------NGT---------DTAKSLDLLVVGNA 163

Query: 196 SGHI-VEVQ-GSAERATFSQDHFFAMLNLAKDRIAD 229
              + +E+Q   + +    +     ++  A  +I +
Sbjct: 164 EAILMIEMQIKDSSQHALEESKLLDLIRHAHTQIQE 199


>gi|291166373|gb|EFE28419.1| polyribonucleotide nucleotidyltransferase [Filifactor alocis ATCC
           35896]
          Length = 726

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 88/245 (35%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R   R  +++R IS          GS +   G T +++     A  E +    +     
Sbjct: 311 IRPDNRSMDEIRPISCEVGTLPRTHGSAIFTRGQTQVMSVTTLGALGEMQTLDGLDENIE 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RA+  ++      +  I +  
Sbjct: 371 KRYMHHYNFPAYSVGEARPSRGPGRREIGHG----ALAERAILPMLPSKEEFAYAIRVVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ ++G T  A++ G+ ++L D    M+       +  + +    AI         + D
Sbjct: 427 EVMSSNGSTSQASVCGSTLSLLDAGVPMKRMVAGIAMGLIKEDEHLAI---------LSD 477

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T+ G I  +Q   + +   ++     L  A+     ++   ++
Sbjct: 478 IQGMEDFLGDMDFKVAGTEEG-ITAIQMDIKISGIDEEILTKALEQARQGRLFILNKMRE 536

Query: 237 VISNE 241
           VIS+ 
Sbjct: 537 VISSP 541



 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 84/225 (37%), Gaps = 27/225 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R++ +    V++ A G+CLV  GDT +L TAT      E +  +  +          G +
Sbjct: 12  RQLKIEIGKVAELANGACLVSCGDTVVLVTATNSALPREGIDFFPLSVDFEERLYSVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   ++    R+I R +R +         Q++     ++ D    
Sbjct: 72  P---GGFIKRE---GRPSEKAILTSRLIDRPIRPLFPKGFRNDVQVVATVLSVEPD---- 121

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                       D L  +         S    G   +++ G++ G  I++ D  + +  D
Sbjct: 122 ---------VTPDVLAMIGSSIALSISSIPFNGPTGSVAVGLIDGQLILNPDVDQRAASD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           +      T    I+ V+  A     ++      +  A + I  ++
Sbjct: 173 LHLTVSGTKDA-IMMVEAGANE--VTERTMLEAILYAHEEIKKIV 214


>gi|268592821|ref|ZP_06127042.1| polyribonucleotide nucleotidyltransferase [Providencia rettgeri DSM
           1131]
 gi|291311606|gb|EFE52059.1| polyribonucleotide nucleotidyltransferase [Providencia rettgeri DSM
           1131]
          Length = 707

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 97/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +    + +   G  T 
Sbjct: 315 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 375 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDHADFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGEDFVV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++  
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITREIMQVALNQAKGARLHILGT 536

Query: 234 QKDVISNE 241
            +  I+  
Sbjct: 537 MEQAINGP 544



 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 31/233 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           +S+    +++ A  + +V   DT +  TA     ++E    +     +   T   G +P 
Sbjct: 16  VSIETGMIARQASAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNYQERTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR G     I R+I R LR +         QII     +         
Sbjct: 75  --GSFFRRE---GRPGEGETLIARLIDRPLRPLFPEGFYNEIQIIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA   L                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAVLA-------------LSGVPFNGPIGAARVGFINDQYVLNPTADELKNSRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                TD+  ++     +E    S++     +    D+    I ++ +L K+ 
Sbjct: 177 LVVAGTDNAVLMV---ESEADLLSEEQMLGAVVFGHDQQQVVIQNINELVKEA 226


>gi|303233686|ref|ZP_07320340.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna
           BVS033A4]
 gi|302495120|gb|EFL54872.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna
           BVS033A4]
          Length = 714

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 96/249 (38%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +R   R+ +Q+REI+    +     GS L K G T +L+  TL       + +     + 
Sbjct: 312 IRPDNRKLDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQVLDGLIEQED 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G+     +   R+ G       +  RAL  V+         I +  
Sbjct: 372 KRYMHQYNFPPYSVGDARPLRSPGRREIGHG----ALAERALLPVIPSEEEFPYTIRVVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           +V+ ++G +  A++ G+ ++L D                 +K  VA I+ G++       
Sbjct: 428 EVLSSNGSSSQASVCGSTLSLLDAGV-------------PIKEPVAGIAMGLIKEDDNVV 474

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           I+ D+   ED   D+D     T  G I  +Q   +    S++     L  A+     ++ 
Sbjct: 475 ILSDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKITGISEEILTEALERARVGRLHILS 533

Query: 233 LQKDVISNE 241
           L  + IS  
Sbjct: 534 LMNECISEP 542



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 88/233 (37%), Gaps = 31/233 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           +I +T   V++ A G+CL++ G+T LL TA       E V  +             G +P
Sbjct: 13  KIEVTIGKVAEQANGACLIQSGETVLLVTAVGSKEPREGVDFFPLTCDFEEKLYSVGKIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R LR +         Q+I     +  D     
Sbjct: 73  ---GGFIKRE---GRPSEKATLTARLIDRPLRPLFPEGYHNDVQVIATALSVDQDNTPDI 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ G+ +AL                     G   +++ GM+ G  I++    +    D+
Sbjct: 127 LAMIGSSIALS-------------ISDIPFLGPTGSVAVGMIDGEFIINPTKEQREKSDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK----LQKD 236
           +     T    I+ V+  A     ++      +  A + I  + +    +QK+
Sbjct: 174 ELTVAGTKDA-IMMVE--AGCNNITEQQVLKAILRAHEEIKKICEFIESIQKE 223


>gi|303251556|ref|ZP_07337730.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307252131|ref|ZP_07534030.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302649554|gb|EFL79736.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860431|gb|EFM92445.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 715

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 92/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   K  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHG----RLAKRGVLAVMPTAEEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKGARMHILSV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 27/232 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERTYAAGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+I     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                T+   ++     +E    S++   + +     +   +I+  K+ +  
Sbjct: 176 LVVAGTNKAVLMV---ESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKE 224


>gi|270294853|ref|ZP_06201054.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D20]
 gi|270274100|gb|EFA19961.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D20]
          Length = 714

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 91/250 (36%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR+  ++R I           GS +   G+T  L+T TL  K+   I +        
Sbjct: 319 RLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  + ++      + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPVN--YPYVVRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNAGEDKY 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     L  AK+    ++
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILEKALLQAKEGREYIL 538

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 539 GKITECIAEP 548



 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 28/242 (11%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       I+L      K A+GS +++ G+T LL T    ++ VP            
Sbjct: 12  PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            ++    R  G   KRE   GR         R++ RALR +   +      + ++  +  
Sbjct: 66  EKFSAFGRFPGGFTKRE---GRASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIILFS 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           V + D L  +   +          G ++ +    + G  +++  + 
Sbjct: 121 ADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGQFVINPTFE 169

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +    D+D     T   +I+ V+G  E    S+      +  A + I    K Q + ++ 
Sbjct: 170 QLEQADMDLMVGATYE-NIMMVEG--EMDEVSEQDLLEAMKAAHEAIKIQCKAQME-LAE 225

Query: 241 EV 242
           EV
Sbjct: 226 EV 227


>gi|222623250|gb|EEE57382.1| hypothetical protein OsJ_07542 [Oryza sativa Japonica Group]
          Length = 941

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 57/294 (19%), Positives = 97/294 (32%), Gaps = 68/294 (23%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           +R+ GRQ +++R +           GS L   GDT +L T TL         ++  G   
Sbjct: 294 LRVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPT 353

Query: 58  -WITAEYGMLPRSTGNRVKREAVSGRQGGRS---------------QE-----------I 90
                 Y   P S     KR  ++ R+ G                  E            
Sbjct: 354 KRFMLHYSFPPFSINEVAKRGGLNRREVGHDGLHGPIRLGDELRVWIEHKALDPTGFLLT 413

Query: 91  QRMI-------------GRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137
            R++              +AL +V+         + ++ +V+ +DG T  A++ G  +AL
Sbjct: 414 NRLVFWERQWLSAGTLAEKALLAVLPPEGEFPYTVRVNSEVMASDGSTSMASVCGGSMAL 473

Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-----------YPIVDLDYGEDSTID 186
            D                 ++ HVA +S G++               + D+   ED   D
Sbjct: 474 MDAGI-------------PVREHVAGVSVGLVSEVDQTTGDISSYRILTDILGLEDHLGD 520

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +D     T  G I  +Q   + A    D     L  A+     ++      IS+
Sbjct: 521 MDFKIAGTRRG-ITAIQLDIKPAGIPLDIICESLEPARKARNQILDRMDQEISS 573



 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 74/223 (33%), Gaps = 38/223 (17%)

Query: 22  KYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRV 74
           ++A GS ++   DTH+L     A   E V  ++       +T +Y     + G      +
Sbjct: 3   RFANGSVVISMDDTHVLSTVAAAKSSEPVRDFLP------LTVDYQEKQYAQGVIPTTYM 56

Query: 75  KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITG 132
           +RE   G    R     R+I R +R +         QI+++  VI +DG       A   
Sbjct: 57  RRE---GAPKERELLCGRIIDRPIRPLFPPGFYHEVQIMVN--VISSDGKQDPDVMAANA 111

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
           +  AL                     G +  I  G + G  +++    E      D N V
Sbjct: 112 SSAAL-------------MLSDIPWNGPIGVIRVGRIDGNFVLNPTVDE--LGLSDLNLV 156

Query: 193 MT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
                   + +   A     ++    A + LA       I  Q
Sbjct: 157 YACSRDKTLMIDVQARE--ITERDLQAGMKLAHAEAVKCINPQ 197


>gi|212692847|ref|ZP_03300975.1| hypothetical protein BACDOR_02346 [Bacteroides dorei DSM 17855]
 gi|212664636|gb|EEB25208.1| hypothetical protein BACDOR_02346 [Bacteroides dorei DSM 17855]
          Length = 728

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57
           RL GR+  ++R I           GS +   G+T  LT+ TL  K+   I     +    
Sbjct: 336 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIVDDVLDQHRE 395

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +         + +  D
Sbjct: 396 RFLLHYNFPPYSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPTG--YPYTVRVVSD 449

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D    M             K  V+ I+ G++        
Sbjct: 450 IMESNGSSSMATVCAGTLALMDAGVAM-------------KKPVSGIAMGLIKNAGEEKY 496

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     L  AK+    ++
Sbjct: 497 AVLSDILGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSFEILEKALLQAKEGREHIL 555

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 556 NKLTECIAEP 565



 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 88/240 (36%), Gaps = 27/240 (11%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       I+L      K A+GS +++ G+T LL T    ++ VP            
Sbjct: 29  PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 82

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y    R  G   KRE   G+         R++ RALR +   +      + ++  +  
Sbjct: 83  EKYSAFGRFPGGFTKRE---GKASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIVLFS 137

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           + + D L  +   +          G ++ +    + G  +++  + 
Sbjct: 138 ADG-----------IDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFE 186

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +    D+D     T   +I+ V+G  E    S+    A +  A + I    K Q +++  
Sbjct: 187 QLGKADMDLMVAATYD-NIMMVEG--EMQEVSEQDLLAAMKAAHEAIKVHCKAQMELMEE 243


>gi|242032199|ref|XP_002463494.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor]
 gi|241917348|gb|EER90492.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor]
          Length = 239

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 84/254 (33%), Gaps = 39/254 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R  S T      A GS     GDT +L      +       N +   I  
Sbjct: 6   RADGRNPNQLRPFSCTGNPLHRAHGSARWAQGDTVVLAAVYGPKPGTRKGENPEKASIEV 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            +                +G+ G + +E +  + R L+S+  L+   +    +   V+  
Sbjct: 66  VWK-------------PKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGD 112

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DG     AI  +  AL      M+  +            VA     M  G  I+D    E
Sbjct: 113 DGSLLPCAINASCAALAFAGIPMKHLA------------VAICCGVMDNGAVILDTSTAE 160

Query: 182 DSTIDVDANFVMTDSGHIVE----VQGSAE----------RATFSQDHFFAMLNLAKDRI 227
           +      A+ V  +S   V+    +Q   E            T S+D++F  +       
Sbjct: 161 EQQAKSFAHLVFPNSRKSVDSKDPMQKDEESERGLISCITHGTMSEDNYFNCIERGIAAS 220

Query: 228 ADLIKLQKDVISNE 241
           + +    +  +  E
Sbjct: 221 SKISDFMRKTLQKE 234


>gi|210632893|ref|ZP_03297592.1| hypothetical protein COLSTE_01499 [Collinsella stercoris DSM 13279]
 gi|210159361|gb|EEA90332.1| hypothetical protein COLSTE_01499 [Collinsella stercoris DSM 13279]
          Length = 743

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 94/251 (37%), Gaps = 38/251 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  N++R I +         GS L + G T +L+  +L       + N      T 
Sbjct: 319 RVDGRAANEIRPIMVKGDYLPLVHGSGLFQRGQTQVLSVLSLG------MLNEGQRLDTI 372

Query: 62  E----------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           E          Y   P  TG   +  +   R+ G       +  RAL  V+         
Sbjct: 373 EPVEGKRYMHHYNFPPYCTGETGRMGSPKRREIGHG----NLAERALIPVLPDENEFPYA 428

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
           I +  +V++++G +  A+  G+ +AL D                 +K  V+ I+ G++  
Sbjct: 429 IRVVSEVMESNGSSSMASTCGSCLALMD-------------GGVPIKRPVSGIAMGLIQE 475

Query: 172 Y----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                 + D+   ED   D+D     T+ G I  +Q   +    + D     L  AK+  
Sbjct: 476 EGKTVVLSDIQGLEDFLGDMDFKVTGTERG-ITALQMDNKATGLTFDILRTALEQAKEGR 534

Query: 228 ADLIKLQKDVI 238
           A ++    +V+
Sbjct: 535 AFILDKMLEVV 545



 Score = 79.4 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 79/224 (35%), Gaps = 27/224 (12%)

Query: 22  KYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78
           K A G+ LVK GD+ +LTT  + ++      +             G +P   G  +KRE 
Sbjct: 24  KQATGAALVKQGDSTVLTTVVVSKERKNYDFFPLTVDFNEKMYAAGRIP---GGYLKRE- 79

Query: 79  VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138
             GR   ++    RMI R +R           Q++    V           + GA +A+ 
Sbjct: 80  --GRPSEKATLTARMIDRPIRPSFPDGFRNEVQVVATSLVADQKNPVDVICVMGASLAM- 136

Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCG--MLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
                              +G +A +  G     G  IV+  Y E    D+D     T  
Sbjct: 137 ------------TLGGVPFEGPLACVRIGRDKETGEFIVNPTYEERDASDLDLELAGTRD 184

Query: 197 GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             I  V+  AE    S++   A +   ++ I      Q + ++ 
Sbjct: 185 F-ISMVEAGAEE--VSEEDMLAAMQFGQEAIGAFCDAQLEFVAE 225


>gi|297588437|ref|ZP_06947080.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC
           53516]
 gi|297573810|gb|EFH92531.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC
           53516]
          Length = 714

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 96/249 (38%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +R   R+ +Q+REI+    +     GS L K G T +L+  TL       + +     + 
Sbjct: 312 IRPDNRKLDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQVLDGLIEQED 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G+     +   R+ G       +  RAL  V+         I +  
Sbjct: 372 KRYMHQYNFPPYSVGDARPLRSPGRREIGHG----ALAERALLPVIPSEEEFPYTIRVVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           +V+ ++G +  A++ G+ ++L D                 +K  VA I+ G++       
Sbjct: 428 EVLSSNGSSSQASVCGSTLSLLDAGV-------------PIKEPVAGIAMGLIKKDDNVV 474

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           I+ D+   ED   D+D     T  G I  +Q   +    S++     L  A+     ++ 
Sbjct: 475 ILSDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKITGISEEILTEALERARVGRLHILS 533

Query: 233 LQKDVISNE 241
           L  + IS  
Sbjct: 534 LMNECISEP 542



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 88/233 (37%), Gaps = 31/233 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           +I +T   V++ A G+CL++ G+T LL TA       E V  +             G +P
Sbjct: 13  KIEVTIGKVAEQANGACLIQSGETVLLVTAVGSKEPREGVDFFPLTCDFEEKLYSVGKIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R LR +         Q+I     +  D     
Sbjct: 73  ---GGFIKRE---GRPSEKATLTARLIDRPLRPLFPEGYHNDVQVIATALSVDQDNTPDI 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ G+ +AL                     G   +++ GM+ G  I++    +    D+
Sbjct: 127 LAMIGSSIALS-------------ISDIPFLGPTGSVAVGMIDGEFIINPTQEQRDKSDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK----LQKD 236
           +     T    I+ V+  A     ++      +  A + I  + +    +QK+
Sbjct: 174 ELTVAGTKDA-IMMVE--AGCNNITEQQVLKAILRAHEEIKKICEFIESIQKE 223


>gi|259417548|ref|ZP_05741467.1| polyribonucleotide nucleotidyltransferase [Silicibacter sp.
           TrichCH4B]
 gi|259346454|gb|EEW58268.1| polyribonucleotide nucleotidyltransferase [Silicibacter sp.
           TrichCH4B]
          Length = 712

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 88/229 (38%), Gaps = 17/229 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R I     +     GS L   G+T  L   TL         +  HG   +
Sbjct: 318 RIDGRALDQVRAIECQTGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+         I +  +
Sbjct: 378 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +++ D    ++       +  VL+      S G+     + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLED---DGSYGI-----LTDI 485

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
              ED   D+D     T++G I  +Q   + A  + +     L  AK  
Sbjct: 486 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKVAGITPEIMKNALAQAKAG 533



 Score = 69.0 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 79/234 (33%), Gaps = 39/234 (16%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70
           ++L    V++ A+G+ +   G+T ++   T   +            +T  Y     +   
Sbjct: 16  LTLETGKVARQADGTVIATLGETSVMANVTYAREQKP---GQDFFPLTVHYQEKYYAAGK 72

Query: 71  --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++ C V+  D      
Sbjct: 73  IPGGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                     G +A    G   G  I++     D   D
Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIAGARVGYEDGEYILNPTV--DDMQD 172

Query: 187 VDAN-------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +  N        V      ++ V+  +E    +++     +  A ++I  +I L
Sbjct: 173 LRLNPEQRLDLVVAGTKDAVMMVE--SEAYELTEEEMLGAVTFAHEQIQPVIDL 224


>gi|118474584|ref|YP_892413.1| polynucleotide phosphorylase/polyadenylase [Campylobacter fetus
           subsp. fetus 82-40]
 gi|187610245|sp|A0RQD0|PNP_CAMFF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|118413810|gb|ABK82230.1| polyribonucleotide nucleotidyltransferase [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 728

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 85/242 (35%), Gaps = 22/242 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNTK 55
           R  GR    +R IS+   +   A GSCL   G T  L   TL       +      +N  
Sbjct: 344 RADGRGLKDVRPISIETNILPNAHGSCLFTRGQTQALVVTTLGTDNDAQMSEYLTEKNAV 403

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G     +A   R+ G       +  RAL   +DL++     + + 
Sbjct: 404 ADKFMFNYNFPGFSVGEASPLKAPGRRELGHG----NLAKRALYPSIDLNS--PYSLRVV 457

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A++ G  ++L               +  V +G   A+         + 
Sbjct: 458 SEILESNGSSSMASVCGGSLSLRAAGVETIKLVAGVAMGLVFEGDEHAV---------LT 508

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     +  G I  +Q   +    S D     L  AK+    ++ L  
Sbjct: 509 DIMGLEDHDGDMDFKVAGSKDG-ITALQMDIKLGGISLDVLKEALYQAKEARDHILNLMV 567

Query: 236 DV 237
             
Sbjct: 568 KA 569



 Score = 69.0 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 78/245 (31%), Gaps = 61/245 (24%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GMLPRSTGN 72
           V+K A G+ L++  +T +L     E+             +T +Y       G +P   G 
Sbjct: 19  VAKQAAGAVLMRVKNTVVLAAVAREDAQ----VEEDFLPLTVQYIEKQYAAGRIP---GG 71

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            VKRE    + G       R+I R+LR +         QI++       +   +  ++  
Sbjct: 72  YVKRET---KPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVMVLSSDPEVDLQVVSLNA 128

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
           A VAL+                  +   V  +  G + G  +++    E     +D  +V
Sbjct: 129 ASVALY-------------LSDIPVNSPVCGVRVGHINGKFVINPSNSELKNSALDL-YV 174

Query: 193 MTDSGHIVEVQG------------------------------SAERATFSQDHFFAMLNL 222
                 ++ ++                                 +   FS+D     + L
Sbjct: 175 AGVKDELLMIEMRSLPNEQNEIVPVIAIDPMMDPSLNEGFVSRQKMNEFSEDLMIDAIKL 234

Query: 223 AKDRI 227
           A + I
Sbjct: 235 ATEAI 239


>gi|169824458|ref|YP_001692069.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC
           29328]
 gi|226702653|sp|B0S1D9|PNP_FINM2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|167831263|dbj|BAG08179.1| polyribonucleotide nucleotidyltransferase [Finegoldia magna ATCC
           29328]
          Length = 714

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 96/249 (38%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +R   R+ +Q+REI+    +     GS L K G T +L+  TL       + +     + 
Sbjct: 312 IRPDNRKLDQIREITCDVDILPRPHGSGLFKRGQTQVLSVTTLGTPSDAQVLDGLIEQED 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G+     +   R+ G       +  RAL  V+         I +  
Sbjct: 372 KRYMHQYNFPPYSVGDARPLRSPGRREIGHG----ALAERALLPVIPSEEEFPYTIRVVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           +V+ ++G +  A++ G+ ++L D                 +K  VA I+ G++       
Sbjct: 428 EVLSSNGSSSQASVCGSTLSLLDAGV-------------PIKEPVAGIAMGLIKEDDNVV 474

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           I+ D+   ED   D+D     T  G I  +Q   +    S++     L  A+     ++ 
Sbjct: 475 ILSDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKITGISEEILTEALERARVGRLHILS 533

Query: 233 LQKDVISNE 241
           L  + IS  
Sbjct: 534 LMNECISEP 542



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 88/233 (37%), Gaps = 31/233 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           +I +T   V++ A G+CL++ G+T LL TA       E V  +             G +P
Sbjct: 13  KIEVTIGKVAEQANGACLIQSGETVLLVTAVGSKEPREGVDFFPLTCDFEEKLYSVGKIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R LR +         Q+I     +  D     
Sbjct: 73  ---GGFIKRE---GRPSEKATLTARLIDRPLRPLFPEGYHNDVQVIATALSVDQDNTPDI 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ G+ +AL                     G   +++ GM+ G  I++    +    D+
Sbjct: 127 LAMIGSSIALS-------------ISDIPFLGPTGSVAVGMIDGEFIINPTKEQREKSDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK----LQKD 236
           +     T    I+ V+  A     ++      +  A + I  + +    +QK+
Sbjct: 174 ELTVAGTKDA-IMMVE--AGCNNITEQQVLKAILRAHEEIKKICEFIESIQKE 223


>gi|49475022|ref|YP_033063.1| polynucleotide phosphorylase/polyadenylase [Bartonella henselae
           str. Houston-1]
 gi|81648398|sp|Q6G5F8|PNP_BARHE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|49237827|emb|CAF27022.1| Polyribonucleotide nucleotidyltransferase [Bartonella henselae str.
           Houston-1]
          Length = 733

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR  + +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 317 RIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYIDSLTGMYKE 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++         I    +
Sbjct: 377 TFLLHYNFPPFSVGETGR----LGSPGRREIGHGKLAWRAIHPMLPSKESFPYTIRAVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  + +G   A+         + D+
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAV---------LSDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T +G I  +Q   +    +++     L  AK     ++      
Sbjct: 484 LGDEDHLGDMDFKVAGTANG-ITALQMDIKIDGITEEIMKIALEQAKGGRIHILNEMAKA 542

Query: 238 ISN 240
           +++
Sbjct: 543 LTS 545



 Score = 82.4 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 80/229 (34%), Gaps = 31/229 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R ++L    +++ A+G+ +  +G+T +L T     + +     +     +   +   G +
Sbjct: 14  RPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEKSYAVGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G  +KRE+   R       I R+I R +R +         Q+I+   VIQ D    
Sbjct: 74  P---GGYLKRES---RPSENETLISRLIDRPIRPLFADGYKNDTQVIVS--VIQHDLENN 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  +  AL                     G +A    G   G  I++    E S 
Sbjct: 126 PDILAMIASSAAL-------------TLSGVPFMGPIAGARVGYCNGQYILNPHIDEMSE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
             +D     T++  ++     +E     +D     +      +  ++  
Sbjct: 173 SKLDLVVAGTENAVLMV---ESEAQELPEDIMLGAVMFGHKGLQPILDA 218


>gi|121728394|ref|ZP_01681422.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V52]
 gi|147674727|ref|YP_001216141.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae O395]
 gi|187611333|sp|A5F913|PNP_VIBC3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|121629328|gb|EAX61760.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V52]
 gi|146316610|gb|ABQ21149.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae O395]
 gi|227012472|gb|ACP08682.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae O395]
          Length = 712

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   K  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSPEEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G+ +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     LN AK     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537

Query: 234 QKDVIS 239
               IS
Sbjct: 538 MDQAIS 543



 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + +    DT +  +   +++    +       +T  Y     + G 
Sbjct: 17  VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR       I R+I R +R +         Q+I     +  D      
Sbjct: 74  IPGGFFKRE---GRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++    E     +D
Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD+  ++     +E    +++   A +    D+   +IK   +
Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHDQQQAVIKAINE 222


>gi|165975991|ref|YP_001651584.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|226702591|sp|B0BUD5|PNP_ACTPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|165876092|gb|ABY69140.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 715

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 92/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   K  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHG----RLAKRGVLAVMPTAEEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKGARMHILSV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 75/232 (32%), Gaps = 27/232 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERTYAAGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+I     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                TD   ++     +E    S++   + +     +   +I+  K+ +  
Sbjct: 176 LVVAGTDKAVLMV---ESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKE 224


>gi|315924496|ref|ZP_07920717.1| polyribonucleotide nucleotidyltransferase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622200|gb|EFV02160.1| polyribonucleotide nucleotidyltransferase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 693

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 88/249 (35%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R   R   Q+R +++         GS L   G+T + + ATL    E +    +     
Sbjct: 310 IRPDNRGMTQVRPLAVKVDYIPRVHGSALFTRGETQVCSVATLGLLKEAQTLDGLELESK 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         I +  
Sbjct: 370 KRYMHNYNFPSYSVGETRPSRGPGRREIGHG----ALAERALLPVLPSEEDFPYAIRVVS 425

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V+ ++G T  A++ G+ +AL                   +K  VA  + G++       
Sbjct: 426 EVMSSNGSTSQASVCGSSMALMAAGV-------------PIKKQVAGCAMGLIKEDEKLA 472

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T+ G I  +Q   +     ++     LN A++    ++ 
Sbjct: 473 ILTDIQGMEDFLGDMDFKVAGTEDG-ITAIQMDIKIHGIDREILTKALNQAREGRLFILG 531

Query: 233 LQKDVISNE 241
           +  D I+  
Sbjct: 532 VMNDAIAQP 540



 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 83/234 (35%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R   +    V++ A+ + +V++GDT LL   T+     E +  +  +  +       G +
Sbjct: 11  RPFRVEIGEVARLAKAAAMVRYGDTSLLCNVTVSKKPREGMDFFPLSVDYEEKQYAVGKI 70

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   ++    R+I R +R +          ++     ++ D    
Sbjct: 71  P---GGFLKRE---GRPSNQAILNSRLIDRPIRPLFPKGFRNDVHVVTMVMSVEHDNAPE 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              + G+ + L                     G  AA+  G++ G  +++    +    +
Sbjct: 125 LVGMLGSSIVLS-------------ISDLPFDGPTAAVQVGLIDGEFVLNPTAAQYEKSE 171

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    ++ V+  A+     +      +  A   I  +I     +++ 
Sbjct: 172 MHLTVAGTREA-VMMVEAGADEIP--EATMLDAILYAHKEIKKIISFIDQIVAE 222


>gi|194366584|ref|YP_002029194.1| polynucleotide phosphorylase/polyadenylase [Stenotrophomonas
           maltophilia R551-3]
 gi|226702692|sp|B4SQR6|PNP_STRM5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|194349388|gb|ACF52511.1| Polyribonucleotide nucleotidyltransferase [Stenotrophomonas
           maltophilia R551-3]
          Length = 702

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR  + +R I++   V     GS L   G+T  + T TL       + +   G   
Sbjct: 315 VRIDGRALDTVRPIAVKTSVLPRTHGSSLFTRGETQAIVTITLGTARDGQVIDAVSGEYK 374

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +      R+ G      R+  R + +V+         I +  
Sbjct: 375 ENFLFHYNFPPYSVGETGRMMGPKRREIGHG----RLAKRGVLAVMPSLESFPYTIRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEGDRFV 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED   D+D     T  G I  +Q   +    +++     L  AK  
Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTAEG-ISALQMDIKIEGITEEIMKQALQQAKAG 530



 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 82/230 (35%), Gaps = 31/230 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ +VKF DT LL +A    +  E    +     +       G +P 
Sbjct: 15  VTLETGEIARQAGGAVIVKFDDTVLLVSAVAAKSAREGQDFFPLTCDYQEKFYAGGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI--QADGGTR 126
             G   KRE   GR   +   I R+I R +R +         QII     +  + DG   
Sbjct: 74  --GGFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLNPEIDGDI- 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                    KG +AA   G   G  I++    E     
Sbjct: 128 -PALIGASAALSLAGT-------------PFKGPIAAAKVGYKDGEYILNPTVSELKESQ 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           ++     T +  ++     +E A  S+D     +      +  +I    +
Sbjct: 174 LELVVAGTANAVLMV---ESEAALLSEDVMLGAVTFGHREMQKVINAINE 220


>gi|259047075|ref|ZP_05737476.1| polyribonucleotide nucleotidyltransferase [Granulicatella adiacens
           ATCC 49175]
 gi|259036125|gb|EEW37380.1| polyribonucleotide nucleotidyltransferase [Granulicatella adiacens
           ATCC 49175]
          Length = 703

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 93/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  LT+AT     E +V   +   + 
Sbjct: 318 VRPDGRKIDEIRPLSSEIDLLPRVHGSGLFTRGQTQALTSATLAPLGEYQVIDGLGIEEG 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL+ V+         I +  
Sbjct: 378 KRFIHHYNFPQFSVGSVGR----AGSPGRREIGHGALGERALKQVIPSPEDFPYTIRLVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICAGTLALMAAGV-------------PIKAPVAGIAMGLISDGTNYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      L  AK    ++++
Sbjct: 481 VLTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILREALTQAKKARFEILE 539

Query: 233 LQKDVISNE 241
                I+  
Sbjct: 540 ELTSTIAEP 548



 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 91/234 (38%), Gaps = 28/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R++ +    ++K A G+ LV++GDT +LT A          ++T    +T  Y     + 
Sbjct: 14  RQLQVEIGQLAKQANGAVLVRYGDTVVLTAAVGT----KQAKDTDFFPLTVNYEEKMYAA 69

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G      +KRE   GR    +    R+I R +R +         QI      +  +    
Sbjct: 70  GKIPGGFIKRE---GRPSEHATLTARLIDRPIRPMFAEGFRNEVQITNTVMSVDPNCPPE 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ G+ +AL                     G +A +  G + G  +++    +    D
Sbjct: 127 MAAMFGSSLALC-------------ISDIPFDGPIAGVDVGRVNGEYVINPTTEQKDNSD 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ++ +   T +  I  V+ SA+    +++     L    + I  L+  Q++++  
Sbjct: 174 IELSVAGTATA-INMVESSAKE--VNEEDMLGALLFGHEEIKKLVAFQEEIVRE 224


>gi|32034381|ref|ZP_00134571.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|126208059|ref|YP_001053284.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
           pleuropneumoniae L20]
 gi|303252208|ref|ZP_07338376.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247551|ref|ZP_07529595.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307256599|ref|ZP_07538380.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307261033|ref|ZP_07542715.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307263214|ref|ZP_07544834.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|187470959|sp|A3MZU3|PNP_ACTP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096735|sp|B3GXC1|PNP_ACTP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|126096851|gb|ABN73679.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|302648991|gb|EFL79179.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306855916|gb|EFM88075.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306865009|gb|EFM96911.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306869335|gb|EFN01130.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306871431|gb|EFN03155.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 715

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 92/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   K  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHG----RLAKRGVLAVMPTAEEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKGARMHILSV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 75/232 (32%), Gaps = 27/232 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERTYAAGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+I     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                TD   ++     +E    S++   + +     +   +I+  K+ +  
Sbjct: 176 LVVAGTDKAVLMV---ESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKE 224


>gi|307245438|ref|ZP_07527526.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254392|ref|ZP_07536230.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258851|ref|ZP_07540583.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853779|gb|EFM85996.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862691|gb|EFM94647.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867202|gb|EFM99058.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 715

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 92/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   K  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIVDELTGEKSD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHG----RLAKRGVLAVMPTAEEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKGARMHILSV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 75/232 (32%), Gaps = 27/232 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERTYAAGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+I     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                TD   ++     +E    S++   + +     +   +I+  K+ +  
Sbjct: 176 LVVAGTDKAVLMV---ESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKE 224


>gi|308189117|ref|YP_003933248.1| polyribonucleotide nucleotidyltransferase [Pantoea vagans C9-1]
 gi|308059627|gb|ADO11799.1| polyribonucleotide nucleotidyltransferase [Pantoea vagans C9-1]
          Length = 740

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 344 RIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTTRDAQNLDELMGERTD 403

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 404 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKAEDFPYTVRVVSE 459

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 460 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDEKFVV 506

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 507 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQEALNQAKGARLHILGV 565

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 566 MEQAISTP 573



 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 67/212 (31%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 45  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKP---GQDFFPLTVNYQERTYAAGR 101

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 102 IPGSFFRRE---GRPSEGETLISRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVHPDIV 158

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 159 AMIGASAALALSGL-------------PFNGPIGAARVGYINDQYVLNPTADELKQSRLD 205

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +  ++     +E    S++     +
Sbjct: 206 LVVAGTQNAVLMV---ESEAEILSEEQMLGAV 234


>gi|254431498|ref|ZP_05045201.1| 3' exoribonuclease family, domain 2 [Cyanobium sp. PCC 7001]
 gi|197625951|gb|EDY38510.1| 3' exoribonuclease family, domain 2 [Cyanobium sp. PCC 7001]
          Length = 708

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 95/233 (40%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           REI LT    +  A GS +V+ GDT +L TAT     E +        +       G +P
Sbjct: 13  REIRLTTGRFAPQAGGSVMVECGDTAVLVTATRSGGREGIDFLPLICDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G+ ++RE+   R   R+  I R+I R +R +         QI+  C  +        
Sbjct: 73  ---GSFMRRES---RPPERATLIARLIDRPMRPLFPGWMRDDLQIVATCLSLDERVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA +A                      G +AA+  G+L    +++  Y E    D+
Sbjct: 127 LAVTGASMATLLA-------------KIPFHGPMAAVRVGLLGDDFVLNPSYREIERSDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     T  G ++ V+  A +    +      ++   + +++LIK Q+ ++ +
Sbjct: 174 DLVVAGTPQG-VIMVEAGANQ--LPEQDVIEGIDFGYEAVSELIKAQQALLKD 223



 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 91/251 (36%), Gaps = 31/251 (12%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R+ GR  +++R I     V  K   GS L + G T +L+ ATL    P   +       +
Sbjct: 321 RVDGRNLDEVRPIQAAAGVLPKRVHGSALFQRGLTQVLSCATL--GTPSDAQEMDDLNPS 378

Query: 61  AE------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
            E      Y   P STG      +   R+ G       +  RAL  V+         + +
Sbjct: 379 TEKTYLHHYNFPPYSTGETKPMRSPGRREIGHG----ALAERALVPVLPAKESFPYVLRV 434

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             + + ++G T   ++ G+ +AL D                 LK  V+  + G++     
Sbjct: 435 VSECLSSNGSTSMGSVCGSTLALMDAGV-------------PLKAPVSGAAMGLIKEGEE 481

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T+ G I  +Q   +    +       +N A+     +
Sbjct: 482 VRILTDIQGIEDFLGDMDFKVAGTEKG-ITALQMDMKITGLAVGTVAEAVNQARPARLHI 540

Query: 231 IKLQKDVISNE 241
           ++   + I   
Sbjct: 541 LEKMLEAIDKP 551


>gi|15231368|ref|NP_190207.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
           thaliana]
 gi|79314404|ref|NP_001030817.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
           thaliana]
 gi|79314427|ref|NP_001030818.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
           thaliana]
 gi|79314448|ref|NP_001030819.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
           thaliana]
 gi|145332769|ref|NP_001078250.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
           thaliana]
 gi|7799009|emb|CAB90948.1| putative protein [Arabidopsis thaliana]
 gi|27808554|gb|AAO24557.1| At3g46210 [Arabidopsis thaliana]
 gi|110736314|dbj|BAF00127.1| hypothetical protein [Arabidopsis thaliana]
 gi|222423954|dbj|BAH19939.1| AT3G46210 [Arabidopsis thaliana]
 gi|222424492|dbj|BAH20201.1| AT3G46210 [Arabidopsis thaliana]
 gi|332644608|gb|AEE78129.1| exosome complex component RRP46 [Arabidopsis thaliana]
 gi|332644609|gb|AEE78130.1| exosome complex component RRP46 [Arabidopsis thaliana]
 gi|332644610|gb|AEE78131.1| exosome complex component RRP46 [Arabidopsis thaliana]
 gi|332644611|gb|AEE78132.1| exosome complex component RRP46 [Arabidopsis thaliana]
 gi|332644612|gb|AEE78133.1| exosome complex component RRP46 [Arabidopsis thaliana]
 gi|332644613|gb|AEE78134.1| exosome complex component RRP46 [Arabidopsis thaliana]
          Length = 239

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 76/211 (36%), Gaps = 27/211 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R ++ +R +     GS     GDT +L      +       N +      
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKACFEV 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            +                SG+ G   +E + ++ R ++S+  L+   +    +   V+  
Sbjct: 65  IWK-------------PKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHD 111

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DG     AI  A  AL D    M+  +            VA   C    GY ++D +  E
Sbjct: 112 DGSLLPCAINAACAALVDAGIPMKHLA------------VAICCCLAENGYLVLDPNKLE 159

Query: 182 DSTIDVDANFVMTDSGHIVEVQGS--AERAT 210
           +  +   A  V  ++   V  +GS  AE   
Sbjct: 160 EKKMTAFAYLVFPNTTLSVLPEGSSVAEGEP 190


>gi|319898331|ref|YP_004158424.1| polyribonucleotide nucleotidyltransferase [Bartonella clarridgeiae
           73]
 gi|319402295|emb|CBI75834.1| polyribonucleotide nucleotidyltransferase [Bartonella clarridgeiae
           73]
          Length = 733

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR  + +R I     +     GS L   G+T  L   TL         ++  G    
Sbjct: 317 RIDGRNPSDVRAIQSEVGILPRTHGSALFTRGETQALVVTTLGTGEDEQYIDSLTGMYKE 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++         I    +
Sbjct: 377 TFLLHYNFPPFSVGEIGR----IGSPGRREIGHGKLAWRAIHPMLPTKESFPYTIRTVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  + +G   AI         + D+
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGEKFAI---------LSDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   +    +++     L  AKD    ++      
Sbjct: 484 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMAKA 542

Query: 238 ISN 240
           +++
Sbjct: 543 LTS 545



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 82/238 (34%), Gaps = 42/238 (17%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ +  +G+T +L T     T +     +     +       G +
Sbjct: 14  RPLILETGKIARQADGAIIATYGETVVLATVVSAKTPKPDQNFFPLTVNYQEKNYAVGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE    R       I R+I R +R +         Q+I+   VIQ D    
Sbjct: 74  P---GGYFKRE---NRPNESETLISRLIDRPIRPLFVEGYKNDTQVIVS--VIQHDLENN 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               AI  +  AL                     G +AA   G   G  I++ +  E   
Sbjct: 126 PDILAIIASSAALTLSGI-------------PFMGPIAAARIGYCNGQYILNPNIDEMPE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERAT---------FSQDHF----FAMLNLAKDRIAD 229
             +D     T++  ++ V+  A             F Q  F     A++ LA+    +
Sbjct: 173 SKLDLVVAGTENA-VLMVESEAHELPENVMLNAIMFGQKSFQPVINAIIKLAEVAAKE 229


>gi|195629840|gb|ACG36561.1| exosome complex exonuclease RRP46 [Zea mays]
          Length = 240

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 86/256 (33%), Gaps = 41/256 (16%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R  + T      A GS     GDT +L      +       N +   I  
Sbjct: 7   RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKPGTRKGENPEKASIEV 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            +                +G+ G + +E +  + R L+S+  L+   +    +   V+  
Sbjct: 67  VWK-------------PKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGD 113

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYG 180
           DG   + AI  +  AL      M             K    AISCG++  G  I+D    
Sbjct: 114 DGSLMSCAINASCAALAFAGIPM-------------KHLAVAISCGVMDNGVVILDTSRA 160

Query: 181 EDSTIDVDANFVMTDSGHIVE----VQGSAE----------RATFSQDHFFAMLNLAKDR 226
           E+      A+ V  +S   VE     Q   E              S+D +F  +      
Sbjct: 161 EEQQARSFAHLVFPNSRKSVESKDPTQRDEESERGLITCITHGAMSEDDYFNCIERGVMA 220

Query: 227 IADLIKLQKDVISNEV 242
            + +    +  +  EV
Sbjct: 221 SSRISDFMRKTLQKEV 236


>gi|257464719|ref|ZP_05629090.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
           202]
 gi|257450379|gb|EEV24422.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
           202]
          Length = 711

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 92/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS L   G+T  L  ATL  +        +   K  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERDAQIIDELTGEKSD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHG----RLAKRGVLAVMPTAEEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMRIALNQAKGARMHILGV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 27/232 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQERTYAAGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+I     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFIDNQFVLNPTMSEQRLSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                TD   ++     +E    +++   A +    ++   +I+  K+ +  
Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKE 224


>gi|254229311|ref|ZP_04922728.1| 3' exoribonuclease family, domain 2 [Vibrio sp. Ex25]
 gi|262393386|ref|YP_003285240.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. Ex25]
 gi|151938119|gb|EDN56960.1| 3' exoribonuclease family, domain 2 [Vibrio sp. Ex25]
 gi|262336980|gb|ACY50775.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. Ex25]
          Length = 711

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 95/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  + TATL  +        +   +  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQAIVTATLGTQRDAQIIDELTGERKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKSSVAGIAMGLVKEGDDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G I  +Q   +    +++     LN A+     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537

Query: 234 QKDVISN 240
             + IS 
Sbjct: 538 MDEAISG 544



 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 73/228 (32%), Gaps = 34/228 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + +V   DT +  +   +++    +       +T  Y     + G 
Sbjct: 17  VTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEA---VAGQDFFPLTVNYQERTYAAGK 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR         R+I R +R +   +     Q+I     +  D      
Sbjct: 74  IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMSVNPDVQPDIV 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + A   G + G  +++    E  T  +D
Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSQTELETSKLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML-------NLAKDRIAD 229
                T+S  ++     +E    +++   A +        +A   I +
Sbjct: 178 LVVAGTESAVLMV---ESEADNLTEEEMLAAVVYGHDQQQVAIKAINE 222


>gi|298528722|ref|ZP_07016126.1| polyribonucleotide nucleotidyltransferase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512374|gb|EFI36276.1| polyribonucleotide nucleotidyltransferase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 739

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           +R+ GR    +R +S+   +     GS L   G+T  LT ATL     +     +     
Sbjct: 320 IRIDGRDLKTVRPLSMEVGLLPRTHGSALFTRGETTALTIATLGSSTDIQHIETLSGDSS 379

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P   G        S R+ G       +  RA++ V+  S      I +  
Sbjct: 380 KSFMLHYNFPPYCVGEVKFLRGPSRREIGHGV----LAERAIQPVLPSSEDFPFTIRLVS 435

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +++ ++G +  A + G  +AL D                 +K  VA I+ G++       
Sbjct: 436 EIMDSNGSSSMATVCGGTLALMDAGI-------------PVKEPVAGIAMGLIRENDEYL 482

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     +  G I  VQ   + +  S +     L+ A +    ++ 
Sbjct: 483 VLTDILGDEDHLGDMDFKVAGSYDG-ITAVQMDIKISGISGEIMHQALDQALEARRHILD 541

Query: 233 LQKDVISNE 241
             K VI   
Sbjct: 542 QMKQVIDEP 550



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 87/231 (37%), Gaps = 31/231 (13%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           +I+         A GS LV+ GDT +L TA           N     +T  Y  +  + G
Sbjct: 18  KINFETGKMANQAHGSVLVQSGDTVVLVTAV----TQPMENNPGFFPLTVNYQEMSYAAG 73

Query: 72  ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125
               +  +RE   GR   R   + R+I R++R +   +     Q++    V+ AD     
Sbjct: 74  KIPGSYFRREI--GRPSERETLVSRLIDRSIRPLFPETFNDEVQVMAT--VLSADPVNDP 129

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI+GA  ALH                    G +A    G +    I++         
Sbjct: 130 DILAISGASAALHM-------------SKIPFMGPLAGARVGYIDDEFILNPSLKLLDQS 176

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D+      T +G +V V+G A+     +D     ++ A  ++  ++  Q++
Sbjct: 177 DLSLMVASTRNG-VVMVEGVADFVP--EDIVARAIDWASQQVIPILDSQEE 224


>gi|148241642|ref|YP_001226799.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           RCC307]
 gi|187611327|sp|A5GRD7|PNP_SYNR3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|147849952|emb|CAK27446.1| Polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           RCC307]
          Length = 719

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 95/234 (40%), Gaps = 28/234 (11%)

Query: 12  REISLT-RRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66
           REI LT RR +  A GS L++ GDT +L TAT                +T +Y       
Sbjct: 13  REIRLTTRRYAPQAGGSVLIECGDTAVLVTATRANG----REGIDFLPLTCDYEERLYAA 68

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
            R  G+ ++RE+   R   R+    R+I R +R +         QI+     +       
Sbjct: 69  GRIPGSFMRRES---RPPERATLACRLIDRPIRPLFPSWMRDDLQIVATVMSVDERVPPD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+TGA +A                      G +AA+  G+L    I++  Y E    +
Sbjct: 126 VLAVTGASLATLLA-------------KIPFYGPMAAVRVGLLGDDFILNPSYREIERSE 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +D     T  G +V V+  A++    ++     ++   + + +LI+ QK+ I+ 
Sbjct: 173 LDLVVAGTAEG-VVMVEAGAQQ--LPEEDMIEAIDFGYEAVLELIRHQKETIAE 223



 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 89/249 (35%), Gaps = 27/249 (10%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           R+ GR  +Q+R IS    V  K   GS L + G T +L+TATL           +  +  
Sbjct: 323 RVDGRSLDQVRPISAAAGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPSNE 382

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      +   R+ G       +  RAL  V+         + +  
Sbjct: 383 KHYLHHYNFPPYSVGETRPMRSPGRREIGHG----ALAERALLPVLPPKESFPYVLRVVS 438

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V+ ++G T   ++ G+ +AL D                 +   VA  + G++       
Sbjct: 439 EVLSSNGSTSMGSVCGSTLALMDAGV-------------PIAAPVAGAAMGLIREGSEVR 485

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T+ G I  +Q   +    +       +  A+     +++
Sbjct: 486 VLTDIQGIEDFLGDMDFKVAGTEKG-ITALQMDMKITGLAMKTIGEAVTQARPARLHILE 544

Query: 233 LQKDVISNE 241
              + +   
Sbjct: 545 KMLEALDKP 553


>gi|238797549|ref|ZP_04641046.1| hypothetical protein ymoll0001_5180 [Yersinia mollaretii ATCC
           43969]
 gi|238718546|gb|EEQ10365.1| hypothetical protein ymoll0001_5180 [Yersinia mollaretii ATCC
           43969]
          Length = 706

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+   +     + +  +
Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSPSEFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKENENFVV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISTP 544



 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 70/212 (33%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           +++   +  + A  + +V   DT +  T   +         +     +   T   G +P 
Sbjct: 16  VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR         R+I R +R +   S L   Q+I     +         
Sbjct: 75  --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +G ++ V+  +E    S+D     +
Sbjct: 177 LVVAGT-AGAVLMVE--SEADILSEDQMLGAV 205


>gi|238783512|ref|ZP_04627534.1| hypothetical protein yberc0001_8550 [Yersinia bercovieri ATCC
           43970]
 gi|238715567|gb|EEQ07557.1| hypothetical protein yberc0001_8550 [Yersinia bercovieri ATCC
           43970]
          Length = 706

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+   +     + +  +
Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSPSEFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKENENFVV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISTP 544



 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 70/212 (33%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           +++   +  + A  + +V   DT +  T   +         +     +   T   G +P 
Sbjct: 16  VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR         R+I R +R +   S L   Q+I     +         
Sbjct: 75  --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +G ++ V+  +E    S+D     +
Sbjct: 177 LVVAGT-AGAVLMVE--SEADILSEDQMLGAV 205


>gi|120597905|ref|YP_962479.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. W3-18-1]
 gi|146293923|ref|YP_001184347.1| polynucleotide phosphorylase/polyadenylase [Shewanella putrefaciens
           CN-32]
 gi|187611297|sp|A4Y9B5|PNP_SHEPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611299|sp|A1RGY0|PNP_SHESW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|120557998|gb|ABM23925.1| Polyribonucleotide nucleotidyltransferase [Shewanella sp. W3-18-1]
 gi|145565613|gb|ABP76548.1| Polyribonucleotide nucleotidyltransferase [Shewanella putrefaciens
           CN-32]
 gi|319427300|gb|ADV55374.1| polyribonucleotide nucleotidyltransferase [Shewanella putrefaciens
           200]
          Length = 699

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 91/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+ + +R +S+   V     GS L   G+T  L T TL  +        I   +  
Sbjct: 314 RIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      ++  R + +V+  +      + +  +
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPSAEEFPYSVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     L  A      ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGT-RGGITALQMDIKIEGITKEIMEIALQQAYGARVHILNV 535

Query: 234 QKDVISNE 241
               I + 
Sbjct: 536 MDQAIGSH 543



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 66/206 (32%), Gaps = 27/206 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A+ + L   GDT +L T       E     +     +   T   G +P 
Sbjct: 15  VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+II    +         
Sbjct: 74  --GGFFKRE---GRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDII 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++    +  T  ++
Sbjct: 129 SMIGTSAALAISGI-------------PFSGPLGAARVGYINGEYVLNPTVAQIETSQLN 175

Query: 189 ANFVMTDSGHIV---EVQGSAERATF 211
                T S  ++   E Q   E    
Sbjct: 176 LVVAGTASAVLMVESEAQALPEEVML 201


>gi|167855122|ref|ZP_02477894.1| polyribonucleotide nucleotidyltransferase [Haemophilus parasuis
           29755]
 gi|219870717|ref|YP_002475092.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis
           SH0165]
 gi|254782722|sp|B8F492|PNP_HAEPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|167853757|gb|EDS24999.1| polyribonucleotide nucleotidyltransferase [Haemophilus parasuis
           29755]
 gi|219690921|gb|ACL32144.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis
           SH0165]
          Length = 709

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 92/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS L   G+T  L  ATL  +        +   K  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERDAQIIDELTGEKSD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHG----RLAKRGVLAVMPTAEEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMRIALNQAKGARMHILGV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 68.2 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 75/232 (32%), Gaps = 27/232 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      + E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVNEGQDFFPLTVDYQERTYAAGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+I     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFIDNQFVLNPTTSEQRLSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                TD   ++     +E    +++   A +    ++   +I+  K+ +  
Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKE 224


>gi|330447373|ref|ZP_08311022.1| polyribonucleotide nucleotidyltransferase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491564|dbj|GAA05519.1| polyribonucleotide nucleotidyltransferase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 708

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 95/248 (38%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   K  
Sbjct: 314 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGEKKD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
           +    Y   P   G      +   R+ G      ++  R + +V+         + +  +
Sbjct: 374 YFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSIDEFPYTVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   +    +++     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTEDG-ITALQMDIKIEGITKEIMQIALNQAKGARKHILSV 535

Query: 234 QKDVISNE 241
             + I+  
Sbjct: 536 MDNAINTP 543



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 70/228 (30%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +V   DT +  +   +    E    +     +   T   G +P 
Sbjct: 15  VTLETGVMARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +         Q+I     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVNPAVSPDIV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + A   G +    +++    E     +D
Sbjct: 129 TMIGTSAALAISGI-------------PFNGPIGAARVGYINDQFVLNPSNVELEESRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T++  ++     +E    +++     +    D+   +IK   +
Sbjct: 176 LVVAGTEAAVLMV---ESEADRLTEEQMLQAVVFGHDQQQTVIKAINE 220


>gi|320540181|ref|ZP_08039836.1| polynucleotide phosphorylase/polyadenylase [Serratia symbiotica
           str. Tucson]
 gi|320029847|gb|EFW11871.1| polynucleotide phosphorylase/polyadenylase [Serratia symbiotica
           str. Tucson]
          Length = 716

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 97/246 (39%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL         +   G  T 
Sbjct: 325 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTD 384

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +++         + +  +
Sbjct: 385 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAMMPKLEDFPYTVRVVSE 440

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 441 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEADNFVV 487

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 488 LSDILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILSV 546

Query: 234 QKDVIS 239
            +  IS
Sbjct: 547 MEQAIS 552



 Score = 69.0 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           +++   +  + A  + +V   DT +  T   +         +     +   T   G +P 
Sbjct: 26  VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 84

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR         R+I R +R +   + L   Q+I     +         
Sbjct: 85  --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDNFLNEVQVIATVVSVNPQVNPDIV 139

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 140 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTTDELKISSLD 186

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +G ++ V+  +E    S+D     +
Sbjct: 187 LVVAGT-AGAVLMVE--SEADVLSEDQMLGAV 215


>gi|238761771|ref|ZP_04622745.1| hypothetical protein ykris0001_12970 [Yersinia kristensenii ATCC
           33638]
 gi|238699885|gb|EEP92628.1| hypothetical protein ykris0001_12970 [Yersinia kristensenii ATCC
           33638]
          Length = 706

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+   +     + +  +
Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSPSEFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDENFVV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISTP 544



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 67/212 (31%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           +++   +  + A  + +V   DT +  T   +         +     +   T   G +P 
Sbjct: 16  VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR         R+I R +R +   S L   Q+I     +         
Sbjct: 75  --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +  ++     +E    S+D     +
Sbjct: 177 LVVAGTAAAVLMV---ESEAQILSEDQMLGAV 205


>gi|297180386|gb|ADI16603.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [uncultured gamma proteobacterium
           HF0010_01E20]
          Length = 701

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 90/247 (36%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L  ATL    +  +   +  +   
Sbjct: 314 RIDGRDLRTVRPIEVEVGVLPKAHGSALFTRGETQALVVATLGTLRDAALIDALEGSYKD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G          R+ G      ++  R + + +  +      I +  +
Sbjct: 374 TFMLHYNFPPYSVGEAGFMSGPKRREIGHG----KLARRGVSASLPNAEDFPYTIRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +   VA ++ G++        
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PITAPVAGVAMGLVKEGNRYAV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     TD G +  +Q   +    +++   + L  A +    ++  
Sbjct: 477 LTDILGDEDHLGDMDFKVAGTDKG-VTALQMDIKIEGITEEIMESALAQAHEARIHILGE 535

Query: 234 QKDVISN 240
              VIS 
Sbjct: 536 MNKVISE 542



 Score = 88.6 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 79/235 (33%), Gaps = 29/235 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           + +    V+K A GS +V  G T +LTT             +     +   T   G +P 
Sbjct: 15  VVMETNKVAKQASGSVIVTIGSTVVLTTVVGAKNPRPGQDFFPLTVNYQEKTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR   +     R+I R +R +     +   Q++        D     A
Sbjct: 74  --GGFFRRE---GRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVCTVLSADKDQDPDIA 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G   AL                    KG + A   G + G  I++  Y       ++
Sbjct: 129 AMIGTSAALAISGI-------------PFKGPLGAARVGYIDGNYILNPGYESLKESMLN 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD--VISNE 241
                T+S  ++     +E    ++D     +      +  +IK   +   I+ +
Sbjct: 176 MTVAGTESAVLMV---ESEAKEMTEDEMLGAVLFGHQEMQAIIKAVTELAAIAGK 227


>gi|58040019|ref|YP_191983.1| polynucleotide phosphorylase/polyadenylase [Gluconobacter oxydans
           621H]
 gi|81351767|sp|Q5FQL9|PNP_GLUOX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|58002433|gb|AAW61327.1| Polyribonucleotide nucleotidyltransferase [Gluconobacter oxydans
           621H]
          Length = 716

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 91/248 (36%), Gaps = 26/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR    +R I     +   A GS L   G+T  L  ATL       I +   G   
Sbjct: 313 IRIDGRDLKTVRPILAEVGILPRAHGSSLFTRGETQALVVATLGTGQDEQIIDALEGEYR 372

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G    R    GR   R     ++  RA+  ++         + +  
Sbjct: 373 SNFMLHYNFPPYSVGE-CGRMGSPGR---REIGHGKLAWRAIHPLLPSKEAFPYTMRVVS 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GYP 173
           ++ +++G +  A + G+ +AL D                 L   VA I+ G++    GY 
Sbjct: 429 EITESNGSSSMATVCGSSLALMDAGV-------------PLPRPVAGIAMGLIKEDRGYA 475

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T  G +  +Q   +  + + +     L  A++    ++ 
Sbjct: 476 VLSDILGDEDHLGDMDFKVAGTADG-VTALQMDIKITSITPEIMKIALEQAREGRIHILG 534

Query: 233 LQKDVISN 240
                ++ 
Sbjct: 535 EMAKALTE 542



 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 67/194 (34%), Gaps = 24/194 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + L    V++ A+G+ ++ +GDT +L TA    +++     +     +       G +
Sbjct: 14  RPLILETGKVARQADGAVMITYGDTVVLCTAVGAKSVKPGQDFFPLTVNYQEKAYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR         R+I R +R +   +     QI         +    
Sbjct: 74  P---GGFFKRE---GRPSEAEVLNARLIDRPIRPLFPENFRNEVQITATVLSYDNENDPA 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             ++ G   AL                     G VA    G + G  +V+  + E     
Sbjct: 128 LVSLIGCSAALTLSGI-------------PFFGPVACARIGRIDGKLVVNPTHDEIKDST 174

Query: 187 VDANFVMTDSGHIV 200
           +D     T  G ++
Sbjct: 175 LDLMVAGTAEGVLM 188


>gi|68065138|ref|XP_674553.1| exosome complex exonuclease [Plasmodium berghei strain ANKA]
 gi|56493201|emb|CAH99095.1| exosome complex exonuclease rrp41, putative [Plasmodium berghei]
          Length = 246

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 94/233 (40%), Gaps = 27/233 (11%)

Query: 2   RLSGRQENQMREISLTRR---VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           RL GR+ N+ R I +      +   A+G    + G+T +L+      ++    +  +   
Sbjct: 13  RLDGRKCNEYRLIKINMGNQNIFNDADGFAFYEIGNTKILSYIQGPTEL---KKTDEKCS 69

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           I  +  + P +  ++ K++         + EI   I     +++ L    + +I I   +
Sbjct: 70  IKCDVFLSPFNVYDKRKKKTK----DNITNEISAYIRNICENIILLDLYKNSEINIFLYI 125

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           I+ DGG + AAI    +AL D                 +K  ++A S   L    IVD +
Sbjct: 126 IERDGGIKHAAINTCILALIDAGIA-------------IKYFISACSVLYLQNKIIVDGN 172

Query: 179 YGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
             E ++   +   V+  ++  I+ ++  AE      D F +M+    D   ++
Sbjct: 173 QLEINSGSPELTMVIELNTHKIILLEFDAE---VPIDIFESMVQTCIDSCVNI 222


>gi|153215841|ref|ZP_01950173.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 1587]
 gi|153829184|ref|ZP_01981851.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 623-39]
 gi|229520938|ref|ZP_04410360.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TM
           11079-80]
 gi|229530452|ref|ZP_04419840.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
           12129(1)]
 gi|124114558|gb|EAY33378.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 1587]
 gi|148875373|gb|EDL73508.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 623-39]
 gi|229332225|gb|EEN97713.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
           12129(1)]
 gi|229342171|gb|EEO07167.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TM
           11079-80]
          Length = 709

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   K  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSPEEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G+ +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     LN AK     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537

Query: 234 QKDVIS 239
               IS
Sbjct: 538 MDQAIS 543



 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + +    DT +  +   +++    +       +T  Y     + G 
Sbjct: 17  VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR       I R+I R +R +         Q+I     +  D      
Sbjct: 74  IPGGFFKRE---GRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++    E     +D
Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD+  ++     +E    +++   A +    D+   +IK   +
Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHDQQQAVIKAINE 222


>gi|315179225|gb|ADT86139.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii NCTC
           11218]
          Length = 711

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGERKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSIDEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G+ +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     LN AK     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTSNG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537

Query: 234 QKDVISN 240
               IS 
Sbjct: 538 MDQAISG 544



 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +V   DT +  +   +    E    +     +   T   G +P 
Sbjct: 17  VTLETGVMARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +   +     Q+I     +  D      
Sbjct: 76  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIV 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + A   G + G  +++    E +T  +D
Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELATSKLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T+S  ++     +E    S++   + +    D+   +IK   +
Sbjct: 178 LVVAGTESAVLMV---ESEAEVLSEEEMLSAVVFGHDQQQTVIKAINE 222


>gi|303248250|ref|ZP_07334513.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio
           fructosovorans JJ]
 gi|302490388|gb|EFL50299.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio
           fructosovorans JJ]
          Length = 751

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 93/247 (37%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKH 56
           +RL GR    +R I +   V     GS +   G+T  L  A    T +E+    +    +
Sbjct: 320 IRLDGRDTKTVRPIGIEVGVLPRTHGSTIFARGETKSLCVATLGSTGDEQKIETLNGETY 379

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P   G        S R+ G       +  R++  V+  +      + +  
Sbjct: 380 KRFMLHYNFPPYCVGEVKPMRGPSRREIGHG----ALAERSILPVLPGADEFPFTMRVVS 435

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
            V++++G +  A++ GA +AL D                 +K  VA I+ G++       
Sbjct: 436 QVMESNGSSSMASVCGASLALMDAGV-------------PVKEPVAGIAMGLIKEGDDFL 482

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T +G +  +Q   +     Q      L+ AK+    ++ 
Sbjct: 483 VLTDILGDEDAMGDMDFKVAGTANG-VTGIQMDIKITGIPQAVMRQALSQAKEARLHILG 541

Query: 233 LQKDVIS 239
              +V++
Sbjct: 542 RMAEVLA 548



 Score = 82.4 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 88/230 (38%), Gaps = 30/230 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRS 69
           + L    ++  A+G+  V+ G T +L TA    L E+   +     +  ++   G +P  
Sbjct: 19  VILETGRLANQADGAVWVQSGGTVVLVTACTQVLPEEKGFFPLTVDYQEMSYAAGRIP-- 76

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRT 127
            G+  +RE   GR   R   + R+I R  R +         QII    V+ ADG      
Sbjct: 77  -GSYFRREI--GRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIAT--VLSADGVVEPDV 131

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+T A  ALH                   +G +A    G + G  + +    +    + 
Sbjct: 132 LALTAASSALH-------------ISKIPFEGPIAGGRVGYVDGAFVFNPT-VQQMNGES 177

Query: 188 DANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             N V   S   +V V+G  +    S+D     L    + +  LI LQ++
Sbjct: 178 TLNLVFAASRDAVVMVEGGGQ--FVSEDMLADALEWGHNSVQPLIDLQEE 225


>gi|149909276|ref|ZP_01897932.1| polyribonucleotide nucleotidyltransferase [Moritella sp. PE36]
 gi|149807593|gb|EDM67541.1| polyribonucleotide nucleotidyltransferase [Moritella sp. PE36]
          Length = 705

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 89/243 (36%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +S+   V     GS L   G+T  L TATL  +      ++  G    
Sbjct: 314 RIDGRDPEMIRALSVMTGVLPRTHGSALFTRGETQALVTATLGTERDAQRIDSLTGETID 373

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 374 RFLMHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPNADEFPYTVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    ++       +  VL G              + D+
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVLDGD---------RSVILSDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     + +G I  +Q   +    ++D     L  AK     ++ +    
Sbjct: 481 LGDEDHLGDMDFKVAGSSAG-ITALQMDIKIEGITKDIMQKALVQAKAARLHILSVMDQA 539

Query: 238 ISN 240
           I+ 
Sbjct: 540 IAT 542



 Score = 56.3 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +   GDT +L +       E     +     +   T   G +P 
Sbjct: 15  VTLETGVIARQATAAVMASIGDTSVLVSVVGKKQAEAGRDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +         Q++     +  +      
Sbjct: 74  --GGFFKRE---GRPSEGETLTCRLIDRPIRPLFPAGFKNEVQVVATVVSVNPEIQPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G   AL                     G + A   G      I++    E +   +D
Sbjct: 129 ALIGVSAALS-------------ISGMPFNGPIGAARIGFQNDEYILNPSTSELAESQLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T++  ++     +E    S++     +    +++  +I+  K+
Sbjct: 176 LVVAGTENAVLMV---ESEAEILSEEQMLGAVMYGHEQMQVVIEAIKE 220


>gi|15640667|ref|NP_230296.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121587861|ref|ZP_01677618.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 2740-80]
 gi|153802011|ref|ZP_01956597.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-3]
 gi|153818691|ref|ZP_01971358.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae NCTC
           8457]
 gi|153822539|ref|ZP_01975206.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33]
 gi|227080828|ref|YP_002809379.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae M66-2]
 gi|229505731|ref|ZP_04395241.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae BX
           330286]
 gi|229509236|ref|ZP_04398721.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33]
 gi|229519556|ref|ZP_04408999.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC9]
 gi|229608842|ref|YP_002879490.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae
           MJ-1236]
 gi|254850881|ref|ZP_05240231.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MO10]
 gi|255744136|ref|ZP_05418089.1| polyribonucleotide nucleotidyltransferase [Vibrio cholera CIRS 101]
 gi|262156112|ref|ZP_06029231.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae INDRE
           91/1]
 gi|298500763|ref|ZP_07010566.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MAK 757]
 gi|81545361|sp|Q9KU76|PNP_VIBCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782745|sp|C3LSQ2|PNP_VIBCM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|9655083|gb|AAF93813.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121547897|gb|EAX57981.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 2740-80]
 gi|124122470|gb|EAY41213.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-3]
 gi|126510771|gb|EAZ73365.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae NCTC
           8457]
 gi|126519957|gb|EAZ77180.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33]
 gi|227008716|gb|ACP04928.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae M66-2]
 gi|229344245|gb|EEO09220.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC9]
 gi|229353808|gb|EEO18744.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33]
 gi|229357954|gb|EEO22871.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae BX
           330286]
 gi|229371497|gb|ACQ61920.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MJ-1236]
 gi|254846586|gb|EET25000.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MO10]
 gi|255738076|gb|EET93468.1| polyribonucleotide nucleotidyltransferase [Vibrio cholera CIRS 101]
 gi|262030148|gb|EEY48793.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae INDRE
           91/1]
 gi|297540544|gb|EFH76602.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MAK 757]
          Length = 709

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   K  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSPEEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G+ +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     LN AK     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537

Query: 234 QKDVIS 239
               IS
Sbjct: 538 MDQAIS 543



 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + +    DT +  +   +++    +       +T  Y     + G 
Sbjct: 17  VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR       I R+I R +R +         Q+I     +  D      
Sbjct: 74  IPGGFFKRE---GRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++    E     +D
Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD+  ++     +E    +++   A +    D+   +IK   +
Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHDQQQAVIKAINE 222


>gi|307244366|ref|ZP_07526479.1| polyribonucleotide nucleotidyltransferase [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492267|gb|EFM64307.1| polyribonucleotide nucleotidyltransferase [Peptostreptococcus
           stomatis DSM 17678]
          Length = 696

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 85/245 (34%), Gaps = 18/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPM--WIRNTKH 56
           +R   R  +++R I     +     GS +   G T +L   TL     V     +   ++
Sbjct: 316 VRPDNRSLDEIRPIWCEVGMIPRTHGSAIFTRGQTQVLNVTTLGALGDVQRLDGLDEEEN 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         I +  
Sbjct: 376 KRYMHHYNFPAYSVGETRPSRGPGRREIGHG----ALAERALLPVIPSKEDFPYAIRLVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ ++G T  A++  + ++L D    ++D      +  +      A+         + D
Sbjct: 432 EVLSSNGSTSQASVCASTLSLLDAGVPIKDMVAGIAMGLIKHHGKVAV---------LSD 482

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T+ G +  +Q   + A   +      L  A++    ++   K 
Sbjct: 483 IQGMEDHLGDMDFKVAGTEKG-VTAIQMDIKIAGIDEPVLRQALKQAREGRLHILGEMKK 541

Query: 237 VISNE 241
           VI+  
Sbjct: 542 VITEP 546



 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 86/228 (37%), Gaps = 31/228 (13%)

Query: 12  REISLTRRVSKYAE---GSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYG 64
           R +++     K AE   G+C++ +GDT L+   T      + +  +  +          G
Sbjct: 14  RTLTVEIG--KIAEMTNGNCIISYGDTMLMVNVTKSAQPRDGIDFFPLSVDFEEKLYSVG 71

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G  +KRE   GR   ++    R+I R +R +         Q++     ++ D  
Sbjct: 72  KIP---GGFLKRE---GRASEKATLTSRLIDRPIRPLFPEGFRNDVQVVATVLSVEQDCT 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+ G+ +AL                     G  A++  G++ G  +++ +  +   
Sbjct: 126 PDIVAMLGSSIALS-------------ISDIPFNGPTASVLVGLIDGEFVLNPN--QQQR 170

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            D D + V++ +   + +  +             +L  A + I  +++
Sbjct: 171 EDSDLHLVVSGTKEAIMMVEAGANEVDDNVVLDGIL-YAHEEIKKIVE 217


>gi|326202154|ref|ZP_08192024.1| polyribonucleotide nucleotidyltransferase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987949|gb|EGD48775.1| polyribonucleotide nucleotidyltransferase [Clostridium
           papyrosolvens DSM 2782]
          Length = 706

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 86/238 (36%), Gaps = 23/238 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +++R +S    +     GS L + G T +LTT TL     +   +      T 
Sbjct: 315 RVDGRSLDEIRPLSAEVGILPRTHGSGLFQRGQTQVLTTITLGAMGDVQKMDGIDTEETK 374

Query: 62  EYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            Y M   +       EA + R  G R      +  R+L  V+           +  +V+ 
Sbjct: 375 RY-MHHYNFPGYSVGEAKTSRGPGRREIGHGALAERSLVPVIPTEIEFPYAFRLVSEVLM 433

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-------P 173
           ++G T   ++ G+ +AL D                 +K  VA IS G++           
Sbjct: 434 SNGSTSQGSVCGSTLALMDAGV-------------PIKAPVAGISAGLVIDEENPDNFVT 480

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
            +D+   ED   D+D     T  G I  +Q   +    + +       L K     +I
Sbjct: 481 FMDIQGIEDFFGDMDFKVAGTTEG-ITAIQMDIKVDGLNYEIIRQAFELTKKGRLQII 537



 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 81/225 (36%), Gaps = 29/225 (12%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYGML 66
           R +++        A GS L+++GDT ++     +A+  + +  +  +  +       G +
Sbjct: 15  RTLTVETGKLAQLANGSALIRYGDTVIMSSATASASPRDGIDFFPLSVDYEERLYAVGKI 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R +R +          ++     ++ D    
Sbjct: 75  P---GGFIKRE---GKPSEKAILTSRVIDRPIRPLFPKDLRNDVAVVNTVMSVEQDNSPE 128

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA VA+                     G +  +  G++ G  +V+ +  E+    
Sbjct: 129 IAAMIGASVAIS-------------ISDIPFNGPIGGVVLGLVDGEVVVNPN--EEQRAK 173

Query: 187 VDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
                 +  +   I  ++  A+      D     +    + I  +
Sbjct: 174 SKMYVTLAGTKEKITMIEAGAD--IVDDDVMLDAIKKGHEVIKQI 216


>gi|291276965|ref|YP_003516737.1| polyribonucleotide nucleotidyltransferase [Helicobacter mustelae
           12198]
 gi|290964159|emb|CBG40004.1| polyribonucleotide nucleotidyltransferase [Helicobacter mustelae
           12198]
          Length = 693

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 90/243 (37%), Gaps = 23/243 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN------T 54
           +R  GR+  ++R IS+   +  +A GS L   G T  L  ATL  +     R        
Sbjct: 316 IRADGRKTTEVRPISIETNILPFAHGSVLFTRGQTQSLVVATLGSENDAQTRENLNDSIP 375

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +    T  Y     S G  +   +V  R+ G       +  +AL   +       R + +
Sbjct: 376 QKENFTFHYNFPGFSVGEALMIGSVGRRELGHG----NLAKKALEDSIIEK---DRTLRL 428

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             ++++++G +  A++ G  +A+  C            +  + +G   A+         +
Sbjct: 429 VSEILESNGSSSMASVCGGSLAICACGMESSGLVAGVAMGLIKEGSEYAV---------L 479

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED   D+D      ++  I  +Q   +            L  A+D    ++++ 
Sbjct: 480 TDIMGLEDHDGDMDFKVAGNENF-ITAMQMDIKLGGLELGILKEALYQARDARLHILQIM 538

Query: 235 KDV 237
           ++ 
Sbjct: 539 QEA 541



 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 80/221 (36%), Gaps = 28/221 (12%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVK 75
           V+K A GS L + G T +L +  +++K            ++ +Y     +TG      +K
Sbjct: 20  VAKQASGSVLYERGGTVILASVAIDDK----DVEGDFLPLSVQYIEKSYATGKIPGGFIK 75

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE   G+ G       R+I R LR +        +   I   V+  DG +          
Sbjct: 76  RE---GKPGEFETLTSRIIDRTLRPLFPKH--YRKTTHISVFVLSYDGESD--------- 121

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
                       +     +       AA+  G + G  +++    E +   +D  ++   
Sbjct: 122 --LQVCALNAAANALLLSAAPFCVPTAAVRIGRIDGVFVLNPSRSELANSALDL-YISGS 178

Query: 196 SGHIVEVQGSA---ERATFSQDHFFAMLNLAKDRIADLIKL 233
            G ++ ++      + +  +++     + LAK  I +L  L
Sbjct: 179 FGDLLMIEMKGGSTKESGINEEELLEAITLAKAHIQELSSL 219


>gi|259156595|gb|ACV96538.1| polyribonucleotide nucleotidyltransferase [Vibrio fluvialis Ind1]
          Length = 708

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   K  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSPEEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G+ +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     LN AK     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537

Query: 234 QKDVIS 239
               IS
Sbjct: 538 MDQAIS 543



 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + +    DT +  +   +++    +       +T  Y     + G 
Sbjct: 17  VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR       I R+I R +R +         Q+I     +  D      
Sbjct: 74  IPGGFFKRE---GRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++    E     +D
Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD+  ++     +E    +++   A +    D+   +IK   +
Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHDQQQAVIKAINE 222


>gi|187610329|sp|A7MIN6|PNP_ENTS8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 711

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 96/246 (39%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 318 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGERTD 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 378 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPAADRFPYTVRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 434 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGENFVV 480

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 481 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITKEIMQVALNQAKGARLHILGV 539

Query: 234 QKDVIS 239
            +  I+
Sbjct: 540 MEQAIN 545



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 76/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   +  + A  + +V   DT +  T       +     +     +   T   G +P 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR       I R+I R LR +     +   Q+I     +         
Sbjct: 75  --GGFFRRE---GRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E  +  +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKSSKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T+S  ++     +E    S+D     +    ++    I ++  L K+ 
Sbjct: 177 LVVAGTESAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVKEA 226


>gi|91228271|ref|ZP_01262207.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus
           12G01]
 gi|269966864|ref|ZP_06180937.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus
           40B]
 gi|91188148|gb|EAS74450.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus
           12G01]
 gi|269828531|gb|EEZ82792.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus
           40B]
          Length = 711

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 95/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  + TATL  +        +   +  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQAIVTATLGTQRDAQIIDELTGERKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G I  +Q   +    +++     LN A+     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537

Query: 234 QKDVISN 240
             + IS 
Sbjct: 538 MDEAISG 544



 Score = 66.7 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 73/226 (32%), Gaps = 29/226 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + +V   DT +  +   +++    +       +T  Y     + G 
Sbjct: 17  VTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEA---VAGQDFFPLTVNYQERTYAAGK 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR         R+I R +R +   +     Q+I     +  D      
Sbjct: 74  IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMSVNPDVQPDIV 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + A   G + G  +++    E  T  +D
Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSQTELETSKLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
                T+S  ++     +E    +++   A +    D     + +Q
Sbjct: 178 LVVAGTESAVLMV---ESEADNLTEEEMLAAVVYGHD--QQQVAIQ 218


>gi|190149890|ref|YP_001968415.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|189915021|gb|ACE61273.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 685

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 92/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   K  
Sbjct: 284 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSD 343

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 344 RFLFHYNFPPYSVGETGRIGSPKRREIGHG----RLAKRGVLAVMPTAEEFPYVVRVVSE 399

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 400 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 446

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 447 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKGARMHILSV 505

Query: 234 QKDVI 238
            +  I
Sbjct: 506 MEQAI 510



 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 66/211 (31%), Gaps = 26/211 (12%)

Query: 34  DTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQE 89
           DT +  T      ++E    +     +   T   G +P   G   KRE   GR       
Sbjct: 6   DTTVFVTVVAKKEVKEGQDFFPLTVDYQERTYAAGRIP---GGFFKRE---GRPSEGETL 59

Query: 90  IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN 149
           I R+I R +R +         Q+I     +         A+ GA  AL            
Sbjct: 60  IARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLVAMIGASAALS----------- 108

Query: 150 KFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERA 209
                    G + A   G +    +++    E     +D     TD   ++     +E  
Sbjct: 109 --LSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGTDKAVLMV---ESEAD 163

Query: 210 TFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             S++   + +     +   +I+  K+ +  
Sbjct: 164 ILSEEQMLSAVVFGHQQQQVVIENIKEFVKE 194


>gi|167626449|ref|YP_001676949.1| polynucleotide phosphorylase/polyadenylase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|189037306|sp|B0TZ09|PNP_FRAP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|167596450|gb|ABZ86448.1| Polyribonucleotide nucleotidyltransferase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 693

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 87/245 (35%), Gaps = 19/245 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I++   V     GS L   G+T  L   TL           +   +  
Sbjct: 317 RIDGRCTETIRPINVKIGVLPGVHGSALFTRGETQALVVTTLGSDRDAQLVESLDGIEKS 376

Query: 58  WITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                Y   P S G   +   A   R+ G +     +  RA ++V          + I  
Sbjct: 377 RYMLHYNFPPYSVGECGMVGMAPKRREIGHA----NLAKRATQAVFPNEEAYPYVVRIVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G +  A + G+ +++ D    + +      +  +  G   A+         + D
Sbjct: 433 EILESNGSSSMATVCGSSLSMMDAGVPIAEPVAGIAMGLIKDGAKYAV---------LSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G +  +Q   +    S++        A+     ++ +  +
Sbjct: 484 ILGDEDHLGDMDFKVAGTRYG-VTALQMDIKIKGISREILEQAFEQARTGRLHILGIMNE 542

Query: 237 VISNE 241
           VI   
Sbjct: 543 VIREH 547



 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 81/221 (36%), Gaps = 30/221 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           T  +++ A+GS  V  G+  +L T     ++      +  +  +   T   G +P   G 
Sbjct: 19  TGGMARQADGSVTVSCGNNVVLVTTVVKKSVAAGADFFPLSVHYLEKTYAAGKIP---GG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAI 130
            ++RE   GR       I R+I R++R           QI+    V+  DG       A+
Sbjct: 76  FLRRE---GRPSEEQILISRLIDRSIRPSFPDGFFNEIQIVAT--VLSYDGSFSPDMLAL 130

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  +L       +D              +A +  G   G  I++ +  E    D+D  
Sbjct: 131 IGASASLAISGAPYDDI-------------IAGVRVGYTNGKYILNPNKEELKESDLDLV 177

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
              TD   I+ V+  +E  +  +      +  A   +  +I
Sbjct: 178 VSGTDDA-ILMVE--SEANSLPESVMLGGILYAHKHLKTII 215


>gi|262191202|ref|ZP_06049401.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae CT
           5369-93]
 gi|262032904|gb|EEY51443.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae CT
           5369-93]
          Length = 708

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   K  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSPEEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G+ +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     LN AK     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537

Query: 234 QKDVIS 239
               IS
Sbjct: 538 MDQAIS 543



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + +    DT +  +   +++    +       +T  Y     + G 
Sbjct: 17  VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR       I R+I R +R +         Q+I     +  D      
Sbjct: 74  IPGGFFKRE---GRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++    E     +D
Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD+  ++     +E    +++   A +    D+   +IK   +
Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHDQQQAVIKAINE 222


>gi|224043308|ref|XP_002196618.1| PREDICTED: similar to exosome component 6 [Taeniopygia guttata]
          Length = 276

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 90/257 (35%), Gaps = 25/257 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P    +   G+I  
Sbjct: 23  RPDGRELGEFRTTTVNIGSITTADGSALVKLGNTTVICGVKAELAAPA-ADSANKGYIVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115
               LP     R +    SG  G  +Q   + I   +    ++    L    G    ++ 
Sbjct: 82  NVE-LPSLCAERFR----SGPPGEEAQAASQFIADVIENSQMIVKEDLCIANGKLAWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
           CD+  +  DG    A++     AL +             + + + K +   +++ H  A 
Sbjct: 137 CDIICLDYDGNLLDASVFALLAALKNVQLPSVTINEETGLSEVNLKQKNPLIIRKHPVAT 196

Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           S  +      IVD    E+         V  + G +  V      +  +       +  A
Sbjct: 197 SFAIFDDTLLIVDPTAEEEDLATGTVTIVTDEEGRLCSVHKPG-GSPLTGAKLQDCITRA 255

Query: 224 KDRIADLIKLQKDVISN 240
             R  ++ KL   VI +
Sbjct: 256 ITRHKEVKKLIDKVIKS 272


>gi|54307819|ref|YP_128839.1| polynucleotide phosphorylase/polyadenylase [Photobacterium
           profundum SS9]
 gi|81400130|sp|Q6LUI8|PNP_PHOPR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|46912242|emb|CAG19037.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium
           profundum SS9]
          Length = 707

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +    I ++  G    
Sbjct: 314 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDSIMGEKKD 373

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R + +V+         + +  +
Sbjct: 374 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVEEFPYTVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     TD G I  +Q   +    +++     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTDDG-ITALQMDIKIEGITKEIMQIALNQAKGARKHILSV 535

Query: 234 QKDVISNE 241
             D I   
Sbjct: 536 MDDAIGTH 543



 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 69/234 (29%), Gaps = 35/234 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +    DT +  +   +    E    +     +   T   G +P 
Sbjct: 15  VTLETGVMARQATAAVMASMDDTSVFVSVVGKKAAVEGQDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +   +     Q+I     +  +      
Sbjct: 74  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSVNPEVNPDMI 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            +     AL                     G + A   G +    +++    E     +D
Sbjct: 129 TMIATSAALA-------------ISGLPFNGPIGAARVGFINDQFVLNPSNTELEESRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                T    ++     +E    S++     +    D        Q+ V+ N +
Sbjct: 176 LVVSGTKDAVLMV---ESEADRLSEETMLQAVVYGHD--------QQQVVINAI 218


>gi|238793025|ref|ZP_04636654.1| Polyribonucleotide nucleotidyltransferase [Yersinia intermedia ATCC
           29909]
 gi|238727625|gb|EEQ19150.1| Polyribonucleotide nucleotidyltransferase [Yersinia intermedia ATCC
           29909]
          Length = 706

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+   +     + +  +
Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSPSEFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGENFVV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISTP 544



 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 66/212 (31%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           +++   +  + A  + +V   DT +  T   +         +     +   T   G +P 
Sbjct: 16  VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR         R+I R +R +   S L   Q+I     +         
Sbjct: 75  --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 ALIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTTDELKESRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T    ++     +E    S+D     +
Sbjct: 177 LVVAGTADAVLMV---ESEAQILSEDQMLGAV 205


>gi|114562173|ref|YP_749686.1| polynucleotide phosphorylase/polyadenylase [Shewanella
           frigidimarina NCIMB 400]
 gi|122300513|sp|Q086G7|PNP_SHEFN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|114333466|gb|ABI70848.1| Polyribonucleotide nucleotidyltransferase [Shewanella frigidimarina
           NCIMB 400]
          Length = 698

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 90/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+ + +R +S+   V     GS L   G+T  L T TL  +        I   +  
Sbjct: 314 RIDGREPDMIRALSVLAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      ++  R + +V+  +      I +  +
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGMNAVMPSAEEFPYSIRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     L  A      ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMDIALQQAYGARVHILNV 535

Query: 234 QKDVISNE 241
               I   
Sbjct: 536 MDQAIGTH 543



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 75/234 (32%), Gaps = 35/234 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A+ + L   GDT +L T   ++        +     +   T   G +P 
Sbjct: 15  VTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTVNYQEKTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+II    +         
Sbjct: 74  --GGFFKRE---GRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDIV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G +    +++     D      
Sbjct: 129 SMIGTSAALAISGI-------------PFSGPLGAARVGYINDEYVLNPTV--DQLATSS 173

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            N V+  +   V +  S E    +++     +    D        Q+ V+ + +
Sbjct: 174 LNLVVAGTKAAVLMVES-EAKALAEEIMLGAVTYGHD--------QQQVVVDAI 218


>gi|315497234|ref|YP_004086038.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis
           excentricus CB 48]
 gi|315415246|gb|ADU11887.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis
           excentricus CB 48]
          Length = 760

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 93/247 (37%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR  +++R+I     V     GS L   G+T  L  ATL         +   G    
Sbjct: 327 RVDGRAVDKVRQIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQFIDALEGTYKE 386

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++  +      + +  +
Sbjct: 387 RFLLHYNFPPYSVGEAGR----MGSPGRREIGHGKLAWRAIRPMLPSAEEFPYTLRVVSE 442

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A + G  ++L D                 LK  V+ I+ G++    GY +
Sbjct: 443 ITESNGSSSMATVCGTSLSLMDAGV-------------PLKRPVSGIAMGLILEKDGYAV 489

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   +    +++     L  A +    ++  
Sbjct: 490 LSDILGDEDHLGDMDFKVAGTELG-ITSLQMDIKVPGITEEIMTKALRQANEGRLHILGE 548

Query: 234 QKDVISN 240
               IS 
Sbjct: 549 MNKAISG 555



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 70/227 (30%), Gaps = 27/227 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R+++L    +++ A+ + L  +G+T +L T                  +T  Y     + 
Sbjct: 24  RKLTLETGRIARQADAAVLATYGETTVLATVVYARAPKP---GQDFFPLTVNYQEKTFAA 80

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G       KRE   GR   +   + R+I R +R +         Q+++       +    
Sbjct: 81  GKIPGGYFKRE---GRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLSHDMENDPD 137

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              +  A  AL                     G +     G++    +++    +     
Sbjct: 138 ILGMVAASAAL-------------TLSGVPFMGPIGGARVGVINDEYVLNPSLDQMKESA 184

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +D     T       +   +E    S+D     L  A   +  +I  
Sbjct: 185 LDLVVAGTQD---ALMMVESEAQELSEDKMLGALMFAHAGMQPVIDA 228


>gi|229512909|ref|ZP_04402376.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TMA 21]
 gi|229350158|gb|EEO15111.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TMA 21]
          Length = 708

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   K  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSPEEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G+ +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     LN AK     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537

Query: 234 QKDVIS 239
               IS
Sbjct: 538 MDQAIS 543



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + +    DT +  +   +++    +       +T  Y     + G 
Sbjct: 17  VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR       I R+I R +R +         Q+I     +  D      
Sbjct: 74  IPGGFFKRE---GRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++    E     +D
Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD+  ++     +E    +++   A +    D+   +IK   +
Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHDQQQAVIKAINE 222


>gi|154254063|ref|YP_001414887.1| polynucleotide phosphorylase/polyadenylase [Parvibaculum
           lavamentivorans DS-1]
 gi|187610324|sp|A7HZ97|PNP_PARL1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|154158013|gb|ABS65230.1| Polyribonucleotide nucleotidyltransferase [Parvibaculum
           lavamentivorans DS-1]
          Length = 728

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     V     GS L   G+T  L  ATL         +   G    
Sbjct: 316 RIDGRDLETVRPIVSEVGVLPRTHGSALFTRGETQALVVATLGTGDDEQFIDALEGTYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      ++  RALR+V+         + +  +
Sbjct: 376 NFLLHYNFPPFSVGETGRVGFTGRREVGHG----KLAWRALRAVLPPKTEFPYTLRLVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G+ +A+ D    ++       +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMATVCGSSLAMMDAGVPLKRAVAGIAMGLILEGERFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    ++      L  AK     ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTQEG-VTSLQMDIKITGINERIMKQALAQAKGGRLHILGEMAKA 541

Query: 238 I 238
           +
Sbjct: 542 L 542



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 77/236 (32%), Gaps = 38/236 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ L  +GDT +L T   E K       +     +   T   G +
Sbjct: 14  RTLVLETGKIARQADGAVLATYGDTTVLATVVGERKPKPGLDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +   + R+I R +R +         Q+I        +    
Sbjct: 74  P---GGFFKRE---GRPSEKETLVSRLIDRPIRPLFIKGFKNETQVIATVVSHDMENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+     AL                     G + A   G + G   ++    E     
Sbjct: 128 IVAMIAVSAAL-------------TISGLPFLGPIGAARVGYIGGEYKLNPMIDEMPESA 174

Query: 187 VDANFVMTDSGHIVEVQGSAERAT---------FSQDHFFAMLN----LAKDRIAD 229
           +D     T    ++ V+  A+  +         F    F  +++    +A+    +
Sbjct: 175 LDLVVAGTADA-VMMVESEAKELSEDIMLGAVMFGHKEFQPVIDMIIRMAEKCAKE 229


>gi|78779675|ref|YP_397787.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9312]
 gi|123553957|sp|Q319U4|PNP_PROM9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78713174|gb|ABB50351.1| RNA binding S1 [Prochlorococcus marinus str. MIT 9312]
          Length = 721

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 95/238 (39%), Gaps = 36/238 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66
           REI LT    +  A GS +++ GDT LL TAT   K            +  +Y       
Sbjct: 13  REIRLTTGLYAPQANGSVMIECGDTSLLVTATKTTK----KEVADFLPLICDYEEKLYAA 68

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----AD 122
            R  G  ++RE   GR   R+  I R+I R +R +         QI+  C  +     AD
Sbjct: 69  GRIPGGFMRRE---GRPPERATLISRLIDRPMRPLFPSWMRDEIQIVASCLSLDERVPAD 125

Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
                 A+TGA +A                      G +AA+  G++    I++  Y E 
Sbjct: 126 ----VLAVTGASIA-------------TLLGEIPFHGPMAAVRVGLIGDDFILNPSYREI 168

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
              D+D     +  G IV ++  A +   S+      ++   + + +LIK Q D++ +
Sbjct: 169 EKGDLDIVVAGSPDG-IVMIEAGANQ--LSEQDTIEAIDFGYESVTELIKSQVDLLKD 223



 Score = 94.8 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 94/251 (37%), Gaps = 31/251 (12%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R+ GR+ +++R+IS +  +  K   GS L + G T +L+T TL    P   +       +
Sbjct: 323 RVDGRELDEVRKISASAGILPKRVHGSALFQRGLTQVLSTTTL--GTPSDAQEMDDLNPS 380

Query: 61  AE------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
            E      Y   P S G          R+ G       +  RA+  V+         + +
Sbjct: 381 TEKTYLHHYNFPPFSVGETRPMRTPGRREIGHG----ALAERAIIPVLPGKETFPYVLRV 436

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V+ ++G T   ++ G+ ++L D                 LK  V+  + G++     
Sbjct: 437 VSEVLSSNGSTSMGSVCGSTLSLLDAGV-------------PLKALVSGTAMGLIKEGKE 483

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T+ G I  +Q   +    S       +  A+     +
Sbjct: 484 IRILTDIQGIEDFLGDMDFKVAGTEKG-ITALQMDMKITGLSVSVISDAIKKARPARLHI 542

Query: 231 IKLQKDVISNE 241
           ++  ++ I   
Sbjct: 543 LEKMQEAIDKP 553


>gi|153826503|ref|ZP_01979170.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-2]
 gi|254226546|ref|ZP_04920129.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V51]
 gi|254291886|ref|ZP_04962668.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
           AM-19226]
 gi|125620950|gb|EAZ49301.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V51]
 gi|149739683|gb|EDM53890.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-2]
 gi|150422172|gb|EDN14137.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
           AM-19226]
          Length = 708

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   K  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSPEEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G+ +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     LN AK     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537

Query: 234 QKDVIS 239
               IS
Sbjct: 538 MDQAIS 543



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + +    DT +  +   +++    +       +T  Y     + G 
Sbjct: 17  VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR       I R+I R +R +         Q+I     +  D      
Sbjct: 74  IPGGFFKRE---GRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++    E     +D
Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD+  ++     +E    +++   A +    D+   +IK   +
Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHDQQQAVIKAINE 222


>gi|307207928|gb|EFN85487.1| Exosome complex exonuclease RRP43 [Harpegnathos saltator]
          Length = 279

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 88/258 (34%), Gaps = 25/258 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+    R IS+       A+ S + K G T ++     E  +P      + G+I 
Sbjct: 22  IRPDGRKFLSFRPISINVSSIVQADSSAIFKLGSTTVVCGIKAELAIPK-TDTPECGYII 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALG---SRQIII- 114
               + P  +          G    ++Q I ++I   L+  + +DL  L     + + + 
Sbjct: 81  PNVELSPLCSPKFR-----PGPPSEQAQVISKLIDIILKNSTAIDLKDLCICKRKLVWVL 135

Query: 115 DCDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAA 163
            CD+  +  +G    A       AL               +     K +   V+K    +
Sbjct: 136 YCDMLCLNYNGSVIDACTGALTAALKTLTLPEVNYNLETGVTVVHPKKRKPFVMKMLPVS 195

Query: 164 ISCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
           IS  +      IVD    E+S      + VM     I  V         SQ  F   + +
Sbjct: 196 ISFAIFEKQMLIVDPTDEEESLSLGRLSVVMDSEEEICYVHKPG-GIPISQHLFSKAVEI 254

Query: 223 AKDRIADLIKLQKDVISN 240
           AK R   +  L    IS 
Sbjct: 255 AKTRADLVRSLIHAAIST 272


>gi|317153855|ref|YP_004121903.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944106|gb|ADU63157.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 754

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHG- 57
           +R+ GR    +R +S+   V     GSCL + G+T  L  ATL        +        
Sbjct: 319 LRIDGRDTTTVRALSIETGVLPMTHGSCLFRRGETSALAVATLGSTRDEQRYDSLLGDAT 378

Query: 58  -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P   G        S R+ G       +  RA+  V+         I +  
Sbjct: 379 KRFMLHYNFPPYCVGEARMLRGTSRREVGHG----ALAERAIAPVLPNQDEFPFTIRVVS 434

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++++++G +  A++ GA ++L D                 +   VA I+ G+        
Sbjct: 435 EIMESNGSSSMASVCGATLSLMDAGV-------------PISAPVAGIAMGLCKENEQFF 481

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G I  +Q   + +    D     L  AKD    ++ 
Sbjct: 482 VLTDILGDEDALGDMDFKVAGTRDG-ITSIQMDIKISGIPSDVLRKALYQAKDARVHILD 540

Query: 233 LQKDVISNE 241
              +V++  
Sbjct: 541 HMAEVLAEP 549



 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 84/234 (35%), Gaps = 37/234 (15%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           +I++     ++ A G+  +K G T +L T+T          +     +T  Y  +  + G
Sbjct: 18  DITIESGKYARQASGAVTIKSGGTVILVTST----TQPIEVDRGFFPLTCNYQEMAYAAG 73

Query: 72  ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
               N  +RE   GR   R   I R+I R +R +         QII    V+ AD     
Sbjct: 74  RVPGNYFRRE---GRPSERETLISRLIDRPIRPLFAKGFADEVQIIAT--VLSADKHVNP 128

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY--GEDS 183
              A+TGA  A H                    G +     G +    ++   Y   E+ 
Sbjct: 129 DVLALTGASAATH-------------ISKMPFLGPIVGARVGYVDNQFVLFPSYKGMEEL 175

Query: 184 TIDVDANFVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +     N +   +   +V V+G A     S+D     L    +++  L  +Q +
Sbjct: 176 SS---LNLIFAATREAMVMVEGGA--NFVSEDLVADALAWGHEQVKPLFDIQDE 224


>gi|99079919|ref|YP_612073.1| polynucleotide phosphorylase/polyadenylase [Ruegeria sp. TM1040]
 gi|123077834|sp|Q1GKK5|PNP_SILST RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|99036199|gb|ABF62811.1| polyribonucleotide nucleotidyltransferase [Ruegeria sp. TM1040]
          Length = 711

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 88/234 (37%), Gaps = 27/234 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  +Q+R I     +     GS L   G+T  L   TL         +  HG   +
Sbjct: 318 RIDGRALDQVRAIECQTGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+         I +  +
Sbjct: 378 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           + +++G +  A++ G  +++ D                 LK  VA ++ G++        
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLVLEEDGSYG 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED   D+D     T++G I  +Q   + A  + +     L  AK  
Sbjct: 481 ILTDILGDEDHLGDMDFKVAGTEAG-ITSLQMDIKVAGITPEIMKNALAQAKAG 533



 Score = 69.0 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 79/234 (33%), Gaps = 39/234 (16%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70
           ++L    V++ A+G+ +   G+T ++   T   +            +T  Y     +   
Sbjct: 16  LTLETGKVARQADGTVIATLGETSVMANVTYAREQKP---GQDFFPLTVHYQEKYYAAGK 72

Query: 71  --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++ C V+  D      
Sbjct: 73  IPGGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                     G +A    G   G  I++     D   D
Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIAGARVGYEDGEYILNPTV--DDMQD 172

Query: 187 VDAN-------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +  N        V      ++ V+  +E    +++     +  A ++I  +I L
Sbjct: 173 LRLNPEQRLDLVVAGTKDAVMMVE--SEAYELTEEEMLGAVTFAHEQIQPVIDL 224


>gi|297580773|ref|ZP_06942699.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC385]
 gi|297535189|gb|EFH74024.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC385]
          Length = 709

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   K  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSPEEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G+ +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     LN AK     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537

Query: 234 QKDVIS 239
               IS
Sbjct: 538 MDQAIS 543



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + +    DT +  +   +++    +       +T  Y     + G 
Sbjct: 17  VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR       I R+I R +R +         Q+I     +  D      
Sbjct: 74  IPGGFFKRE---GRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++    E     +D
Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD+  ++     +E    +++   A +    D+   +IK   +
Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHDQQQAVIKAINE 222


>gi|148976703|ref|ZP_01813390.1| polynucleotide phosphorylase/polyadenylase [Vibrionales bacterium
           SWAT-3]
 gi|145964054|gb|EDK29312.1| polynucleotide phosphorylase/polyadenylase [Vibrionales bacterium
           SWAT-3]
          Length = 706

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  + TATL  +        +   +  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGTQRDAQIIDELTGERKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R + +V+         + +  +
Sbjct: 376 NFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKSSVAGIAMGLVKEGDDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   +    +++     LN A+     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNDG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537

Query: 234 QKDVISN 240
             + IS 
Sbjct: 538 MDEAISG 544



 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 79/234 (33%), Gaps = 35/234 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + +V   DT +  +   +++    ++      +T  Y     + G 
Sbjct: 17  VTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEA---VQGQDFFPLTVNYQERTYAAGK 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR         R+I R +R +   +     Q+I     +  D      
Sbjct: 74  IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMSVNPDVQPDMV 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + A   G + G  +++    E  T  +D
Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELETSKLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                T +G ++ V+  +E    +++   + +    D        Q+ V+ N +
Sbjct: 178 LVVSGT-AGAVLMVE--SEADNLTEEEMLSAVVFGHD--------QQQVVINAI 220


>gi|307128697|ref|YP_003880727.1| polynucleotide phosphorylase/polyadenylase [Candidatus Sulcia
           muelleri CARI]
 gi|306483159|gb|ADM90029.1| polynucleotide phosphorylase/polyadenylase [Candidatus Sulcia
           muelleri CARI]
          Length = 710

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 93/241 (38%), Gaps = 30/241 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +RL GR  + +R IS          GS +   G+T  L+T TL   + +   +       
Sbjct: 319 IRLDGRSLDDIRNISSKVDCLPGVHGSAIFSRGETQALSTVTLGSSLDVNKIDNVIIQDK 378

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG     + VS R+ G       +  RAL++++         I +  
Sbjct: 379 QKFYLHYNFPPFSTGEIKLLKGVSRREIGHG----NLAQRALKNIIPFD--NPYTIRVVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           DV++++G +  A +  + +AL D                 +K  V+ IS G++     G 
Sbjct: 433 DVLESNGSSSMATVCASTLALMDAGI-------------PIKRPVSGISMGLIFNKFTGE 479

Query: 173 PIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
            ++  D+   ED+  D+D     T  G +   Q   +    S D     +  AK  I  +
Sbjct: 480 ALILSDILGDEDNIGDMDFKITGTKYG-MTACQMDLKIYGISYDILLKTILKAKKGIIFI 538

Query: 231 I 231
           I
Sbjct: 539 I 539



 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 84/236 (35%), Gaps = 33/236 (13%)

Query: 4   SGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGW 58
            GR       +S+        A GS +V+  +T L+ T  +    ++ V     N  +  
Sbjct: 14  DGRT------LSIETGYLACQANGSAVVRMANTSLIATVVVSTEEKKGVNFLPLNIDYRE 67

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
             +  G +P   G  +KRE   GR         R++ R LR +         QI+I   +
Sbjct: 68  KYSAGGKIP---GGFIKRE---GRPSDEEILTMRLVDRLLRPLFPKIFYKEIQIMIS--L 119

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +  D              L D L  +   +  +      KG V+A+    +    I++  
Sbjct: 120 LSYDINV-----------LPDGLAGLVASTAVYLSGIPFKGPVSAVRIIRMKNLFIINPG 168

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
             +    D+D   V      I+ V+G  E    S+     ++ +A   I   IK Q
Sbjct: 169 IEDVKKSDIDL-IVGGSINSILMVEG--EMKEVSEKEIMKIIKIAHFYIKRQIKAQ 221


>gi|281200843|gb|EFA75059.1| hypothetical protein PPL_11677 [Polysphondylium pallidum PN500]
          Length = 233

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 83/243 (34%), Gaps = 30/243 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+  R  NQ+R I     +   A+GS      ++ +L       +V    R  K    T
Sbjct: 2   VRIDKRNNNQIRSIESELALLNKADGSAKFSLDNSSVLAAIYGPVEVNP--RKEKISKAT 59

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            E    P S           G Q  +++E + +I  A+ SV+         I I   V  
Sbjct: 60  VEVVFTPDS-----------GNQNYQTKEQESLIRNAIESVIMTMLHPRTLISIIIQVYS 108

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDY 179
            DG   + +I  A +AL D    +                +A+IS      G   +D   
Sbjct: 109 TDGSIVSCSINAACLALLDAGIELNSL-------------IASISLSFNSDGQIYLDPTM 155

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            E++     A +       ++ ++ S      ++      L LA+     ++   +  + 
Sbjct: 156 KEENESKATAIYAFNSQLKLMMIKSSG---IITEQQNQEALQLARSSCERILAYIRTAVK 212

Query: 240 NEV 242
             +
Sbjct: 213 TRI 215


>gi|125773375|ref|XP_001357946.1| GA10930 [Drosophila pseudoobscura pseudoobscura]
 gi|195165852|ref|XP_002023752.1| GL27239 [Drosophila persimilis]
 gi|54637680|gb|EAL27082.1| GA10930 [Drosophila pseudoobscura pseudoobscura]
 gi|194105912|gb|EDW27955.1| GL27239 [Drosophila persimilis]
          Length = 769

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 87/249 (34%), Gaps = 17/249 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           R  GR  + +R IS    + K   GS L + G T +  T +L+        ++      G
Sbjct: 353 RCDGRDYDTLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSPESAMKLDSLAALDSG 412

Query: 58  WITA-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
            + A      Y   P +TG   +     G  G R      +  R+L   +         +
Sbjct: 413 GLKAKNFMLHYEFPPYATGEVGR----IGPLGRRELGHGALAERSLLPTLPHD--YPFTV 466

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            +  +V++++G +  A++ G  +AL D    +   +    +  V K      +  +    
Sbjct: 467 RLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKYE-NDDTKHLQDYR 525

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G    +Q   +            L  A D  + ++ 
Sbjct: 526 ILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKVPGIPLKVVMESLQKATDAKSKILD 584

Query: 233 LQKDVISNE 241
           +  + I   
Sbjct: 585 IMAEAIREP 593



 Score = 85.5 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 86/235 (36%), Gaps = 32/235 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R +S++     ++A G+ + + GDT ++ TA  + K            +  +Y +   ++
Sbjct: 48  RNMSISSGKLARFANGTAVCQMGDTAVMVTAVAKPKPTP---GQNFMPLVVDYRLKNAAS 104

Query: 71  GNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
           G R+    +    G   +EI   R+I R+LR + +       Q++ +   + A       
Sbjct: 105 G-RIPMNFMRRELGPSEKEILSARLIDRSLRPLFNKDYRTETQLVCNMLAMDAVHSPDIL 163

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           AI  A +AL                     G + A+  G+  G  +++    E  +  +D
Sbjct: 164 AINAASMALS-------------LSDIPWNGPIGAVRVGLSDGEVLINPTRRELQSSQLD 210

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-------IADLIKLQKD 236
                T    +V ++G              +L   K         I ++ +LQK 
Sbjct: 211 LVVSATKQNLVVMLEGKGNVVL-----MQDLLKAIKQGTREAQFIIQEIERLQKA 260


>gi|260771169|ref|ZP_05880096.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii CIP
           102972]
 gi|260613766|gb|EEX38958.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii CIP
           102972]
          Length = 711

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGERKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSIDEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G+ +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEEDDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     LN AK     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTSNG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537

Query: 234 QKDVISN 240
               IS 
Sbjct: 538 MDQAISG 544



 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +V   DT +  +   +    E    +     +   T   G +P 
Sbjct: 17  VTLETGVMARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +   +     Q+I     +  D      
Sbjct: 76  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIV 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + A   G + G  +++    E +T  +D
Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELATSKLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T+S  ++     +E    S++   + +    D+   +IK   +
Sbjct: 178 LVVAGTESAVLMV---ESEAEVLSEEEMLSAVVFGHDQQQTVIKAINE 222


>gi|229525300|ref|ZP_04414705.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae bv.
           albensis VL426]
 gi|229338881|gb|EEO03898.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae bv.
           albensis VL426]
          Length = 709

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   K  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSPEEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G+ +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     LN AK     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537

Query: 234 QKDVIS 239
               IS
Sbjct: 538 MDQAIS 543



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + +    DT +  +   +++    +       +T  Y     + G 
Sbjct: 17  VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR       I R+I R +R +         Q+I     +  D      
Sbjct: 74  IPGGFFKRE---GRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++    E     +D
Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD+  ++     +E    +++   A +    D+   +IK   +
Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHDQQQAVIKAINE 222


>gi|227538513|ref|ZP_03968562.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227241432|gb|EEI91447.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 729

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 84/236 (35%), Gaps = 28/236 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +RL GR    +R I         A GS +   G+T  LT+ TL  K    + +      +
Sbjct: 318 IRLDGRDVRTVRPIWSEVNYLPAAHGSAVFTRGETQSLTSVTLGAKDDEQMIDGAFINGY 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     STG          R+ G       +  R+L+ V+   A     I +  
Sbjct: 378 NKFILHYNFPAFSTGEVRPNRGPGRREVGHG----NLAMRSLKQVLPADAENPYTIRVVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           D+++++G +  A +    +AL D    +             K  V+ I+ G++       
Sbjct: 434 DILESNGSSSMATVCAGTLALMDAGVKL-------------KAPVSGIAMGLITDEKTGK 480

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
              + D+   ED   D+D     T  G IV  Q   +      +     L+ AK+ 
Sbjct: 481 YAILSDILGDEDHLGDMDFKVTGTSKG-IVACQMDLKINGLKWEVLTQALDQAKEA 535



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 83/227 (36%), Gaps = 27/227 (11%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
           +I L+     K A+GS +VK GDT LL T       +  V     +  +    A  G +P
Sbjct: 17  QIELSTGKLAKQADGSVVVKQGDTMLLATVVSAREAKPGVDFLPLSVDYQEKYAATGRIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++REA   R       I R++ RALR +   +     Q++I   +I AD     
Sbjct: 77  ---GGFLRREA---RLSDYEVLISRLVDRALRPLFPENYHADTQVMIS--LISADKDI-- 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                    + D L  +   +          G ++ +    + G  +++    +     +
Sbjct: 127 ---------MPDALAGLAASAAIAVSDIPFNGPISEVRVAKIDGQLVINPKLSDLERATL 177

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           +   V   +  I  V+G  E    S+      +  A + I   I  Q
Sbjct: 178 EF-IVAGSAQDIGMVEG--EANEISETEMVEAIAFAHEAIKKQIAAQ 221


>gi|149640866|ref|XP_001510386.1| PREDICTED: similar to polynucleotide phosphorylase-like protein
           [Ornithorhynchus anatinus]
          Length = 764

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 88/248 (35%), Gaps = 17/248 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R+IS    + K   GS L + G T +L T T +        + +   +  
Sbjct: 338 RCDGRDLTSLRDISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSMKSDLITSAVSG 397

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   V+ R+ G       +  +AL  VV         + 
Sbjct: 398 VKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHG----ALAEKALIPVVPKDF--PFTMR 451

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  + K +       +     
Sbjct: 452 VTSEVLESNGSSSMASACGGSLALMDAGVPVSSAVAGVAIGLITKNNSEKEE--IEDYRL 509

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   +            +  A     +++++
Sbjct: 510 MTDILGIEDYNGDMDFKMAGTNKG-ITALQADIKLPGIPIKIVMEAIQQATVAKREILQI 568

Query: 234 QKDVISNE 241
               IS  
Sbjct: 569 MNRTISKP 576



 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 78/209 (37%), Gaps = 28/209 (13%)

Query: 22  KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78
           ++A+G  +V+ GDT ++ TA   T             +    A  G +P    N ++RE 
Sbjct: 45  RFADGCAVVQLGDTSVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP---TNYLRREL 101

Query: 79  VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAWVA 136
            S     +     R+I R++R +         QI+  C+++  DG       AI GA  A
Sbjct: 102 GS---SDKEILTSRIIDRSIRPLFPAGYFYDTQIL--CNLLAVDGVNEPDVLAINGASAA 156

Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
           L                     G V A+  G++ G  +++    E ++  ++        
Sbjct: 157 LS-------------LSDIPWNGPVGAVRVGLINGECVINPTRREMASSALNLVVAGAPR 203

Query: 197 GHIVEVQGSAERATFSQDHFFAMLNLAKD 225
             +V ++ +AE     Q  F   + +   
Sbjct: 204 SQVVMLEAAAENVL--QQDFSHAIKVGMK 230


>gi|322831218|ref|YP_004211245.1| polyribonucleotide nucleotidyltransferase [Rahnella sp. Y9602]
 gi|321166419|gb|ADW72118.1| polyribonucleotide nucleotidyltransferase [Rahnella sp. Y9602]
          Length = 707

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 96/246 (39%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL         +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +++         + +  +
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAMMPKPEDFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++  G     
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGESFIV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVIS 239
            +  IS
Sbjct: 537 MEQAIS 542



 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 70/212 (33%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   +  + A  + +V   DT +  T   +         +     +   T   G +P 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR         R+I R +R +   S L   Q+I     +         
Sbjct: 75  --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSLNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E  T  +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTADELKTSRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T  G ++ V+  AE    S+D     +
Sbjct: 177 LVVAGTQ-GAVLMVESEAE--VLSEDQMLGAV 205


>gi|114705224|ref|ZP_01438132.1| polyribonucleotide nucleotidyltransferase [Fulvimarina pelagi
           HTCC2506]
 gi|114540009|gb|EAU43129.1| polyribonucleotide nucleotidyltransferase [Fulvimarina pelagi
           HTCC2506]
          Length = 711

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 88/247 (35%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR  + +R+I     +     GS L   G+T  L  ATL         +   G    
Sbjct: 317 RIDGRSLDTVRKIVSEVGILPRTHGSALFTRGETQALVVATLGTGEDEQFVDALTGTYKE 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++  +      +    +
Sbjct: 377 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPAAEQFPYTLRAVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A + G  +A  D                 LK  VA I+ G++  G     
Sbjct: 433 ITESNGSSSMATVCGTSLAFMDAGV-------------PLKRPVAGIAMGLIKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   +    +++     L+ AK     ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTEEG-ITSLQMDIKIQGITEEIMKVALDQAKGGRVHILGE 538

Query: 234 QKDVISN 240
               +  
Sbjct: 539 MNKALGE 545



 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 79/238 (33%), Gaps = 42/238 (17%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R ++L    +++ A+G+ L  +G+T ++ T  + EK P          +T  Y     + 
Sbjct: 14  RRLTLETGKIARQADGAVLATYGETVVMATV-VSEKQPK--AGFDFFPLTVNYQEKTFAA 70

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G       KRE   GR   +     R+I R +R +         Q+++   V+Q D    
Sbjct: 71  GKIPGGFFKRE---GRPSEKETLTSRLIDRPIRPLFAEGYKNDTQVVLT--VLQHD---- 121

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                       D +  +   +          G +     G + G   V+ +  E     
Sbjct: 122 -------LENDPDVVAMVAASAALTLSGVPFMGPIGGARVGYINGEYKVNPNVDEMPESA 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHF---------------FAMLNLAKDRIAD 229
           +D     T    ++     +E    S+D                  A++ LA+    +
Sbjct: 175 LDLVVAGTKDAVLMV---ESEAHELSEDVMLGAVMEGHRSFQPVIDAIIKLAEVAAKE 229


>gi|260596206|ref|YP_003208777.1| polynucleotide phosphorylase/polyadenylase [Cronobacter turicensis
           z3032]
 gi|260215383|emb|CBA27411.1| Polyribonucleotide nucleotidyltransferase [Cronobacter turicensis
           z3032]
          Length = 711

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 96/246 (39%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 318 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGERTD 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 378 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPAADRFPYTVRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 434 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGENFVV 480

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 481 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITKEIMQVALNQAKGARLHILGV 539

Query: 234 QKDVIS 239
            +  I+
Sbjct: 540 MEQAIN 545



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 75/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   +  + A  + +V   DT +  T       +     +     +   T   G +P 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR       I R+I R LR +     +   Q+I     +         
Sbjct: 75  --GGFFRRE---GRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKASKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T+S  ++     +E    S+D     +    ++    I ++  L K+ 
Sbjct: 177 LVVAGTESAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVKEA 226


>gi|16329253|ref|NP_439981.1| polynucleotide phosphorylase/polyadenylase [Synechocystis sp. PCC
           6803]
 gi|81670191|sp|P72659|PNP_SYNY3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|1651733|dbj|BAA16661.1| polyribonucleotide nucleotidyltransferase [Synechocystis sp. PCC
           6803]
          Length = 718

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 94/234 (40%), Gaps = 28/234 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66
           R+I L        A GS L++ GDT +L TAT                +T +Y       
Sbjct: 13  RDIRLKMGTLAPQAGGSVLIQSGDTAVLVTAT----RAKGRDGIDFLPLTVDYEGRLYAA 68

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
            R  G  ++RE   GR   ++  I R+I R LR +         QI+     +  +    
Sbjct: 69  GRIPGGFLRRE---GRPPEKATLISRLIDRPLRPLFPHWLRDELQIVATTLSMDEEVPPD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+TGA VA+                    KG +AA+  G++    I++  Y E    D
Sbjct: 126 VLAVTGASVAVILAQI-------------PFKGPMAAVRVGLVGDDFIINPTYREVHNGD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +D     T +G IV V+  A +    +      ++   + + DLI  Q++++++
Sbjct: 173 LDLVVAGTPAG-IVMVEAGANQ--LPEQDIIEAIDFGYEAVQDLINAQRELMTD 223



 Score = 92.5 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 82/230 (35%), Gaps = 28/230 (12%)

Query: 1   MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNT 54
           +R+ GR+  Q+R IS       +   GS L   G T +L+ ATL            +   
Sbjct: 323 VRVDGRKLEQVRPISCEVGFLPRRVHGSGLFNRGLTQVLSLATLGSPGDAQDLADDLHPE 382

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y   P S G      +   R+ G       +  RA+  V+         + +
Sbjct: 383 DEKRYLHHYNFPPYSVGEARPMRSPGRREIGHG----ALAERAIIPVLPPQEDFPYVVRV 438

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V+ ++G T   ++ G+ +AL D                 +K  V+  + G++     
Sbjct: 439 VSEVLSSNGSTSMGSVCGSTLALMDAGV-------------PIKKPVSGAAMGLIKEGDE 485

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
              + D+   ED   D+D     TDSG I  +Q   +    S +     +
Sbjct: 486 IRILTDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKIDGLSMEVVSKAI 534


>gi|262401655|ref|ZP_06078221.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC586]
 gi|262352072|gb|EEZ01202.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC586]
          Length = 709

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   K  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSVDEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G+ +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     LN AK     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537

Query: 234 QKDVIS 239
               IS
Sbjct: 538 MDQAIS 543



 Score = 56.3 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 74/234 (31%), Gaps = 35/234 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + +    DT +  +   +++    +       +T  Y     + G 
Sbjct: 17  VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR         R+I R +R +         Q+I+    +  D      
Sbjct: 74  IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIVTVVSVNPDVQPDII 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++    E     +D
Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                TD+  ++     +E    +++   A +    D        Q+  + N +
Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHD--------QQQAVINAI 220


>gi|300770058|ref|ZP_07079937.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762534|gb|EFK59351.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 729

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 84/236 (35%), Gaps = 28/236 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +RL GR    +R I         A GS +   G+T  LT+ TL  K    + +      +
Sbjct: 318 IRLDGRDVRTVRPIWSEVNYLPAAHGSAVFTRGETQSLTSVTLGAKDDEQMIDGAFINGY 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     STG          R+ G       +  R+L+ V+   A     I +  
Sbjct: 378 NKFILHYNFPAFSTGEVRPNRGPGRREVGHG----NLAMRSLKQVLPADAENPYTIRVVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           D+++++G +  A +    +AL D    +             K  V+ I+ G++       
Sbjct: 434 DILESNGSSSMATVCAGTLALMDAGVKL-------------KAPVSGIAMGLITDEKTGK 480

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
              + D+   ED   D+D     T  G IV  Q   +      +     L+ AK+ 
Sbjct: 481 YAILSDILGDEDHLGDMDFKVTGTSKG-IVACQMDLKINGLKWEVLTQALDQAKEA 535



 Score = 79.4 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 80/228 (35%), Gaps = 29/228 (12%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
           +I L+     K A+GS +VK GDT LL T       +  V     +  +    A  G +P
Sbjct: 17  QIELSTGKLAKQADGSVVVKQGDTMLLATVVSAREAKPGVDFLPLSVDYQEKYAATGRIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++REA   R       I R++ RALR +   +     Q++I   +I AD     
Sbjct: 77  ---GGFLRREA---RLSDYEVLISRLVDRALRPLFPENYHADTQVMIS--LISADKDI-- 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                    + D L  +   +          G ++ +    + G  +++    +     +
Sbjct: 127 ---------MPDALAGLAASAAIAVSDIPFNGPISEVRVAKIDGQLVINPKLSDLERATL 177

Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           +           +VE     E    S+      +  A + I   I  Q
Sbjct: 178 EFVVAGSAQDIGMVE----GEANEISEAEMVEAIAFAHEAIKKQIAAQ 221


>gi|308050580|ref|YP_003914146.1| polyribonucleotide nucleotidyltransferase [Ferrimonas balearica DSM
           9799]
 gi|307632770|gb|ADN77072.1| polyribonucleotide nucleotidyltransferase [Ferrimonas balearica DSM
           9799]
          Length = 698

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 92/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R +S+   V     GS L   G+T  L  ATL  +        +   +  
Sbjct: 314 RIDGRDTKMIRALSVLPGVLPRTHGSALFTRGETQALVAATLGTERDGQIIDELIGERTD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R +++V+  +      + +  +
Sbjct: 374 RFMLHYNFPPFCVGETGFIGSPKRREIGHG----KLAKRGVQAVMPTAEEFPYTVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ G  +AL D                 +K  VA I+ G++     + +
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDNFVV 476

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    +Q+     L  A +    ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-VTALQMDIKIEGITQEIMQIALKQAFEARVHILGV 535

Query: 234 QKDVI 238
             + +
Sbjct: 536 MDEAL 540



 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
           ++L   V  + A+ + L   GDT +L T   ++ V      +     +   T   G +P 
Sbjct: 15  VTLETGVIARQADAAVLASMGDTTVLVTVVGKKNVQPGQDFFPLTVNYQEKTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +     +   Q+I     ++        
Sbjct: 74  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPKGFMNEVQVIATVVSVEPAVSPDVV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G   AL                     G +     G   G  +++    E  T  +D
Sbjct: 129 AMIGTSAALALSGI-------------PFNGPIGCARVGFRDGEYLLNPSVEELKTSKLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T+S  ++     +E    S++     +         +I+   +
Sbjct: 176 LVVAGTESAVLMV---ESEAEVLSEEIMLGAVMFGHQAQQTVIQAINE 220


>gi|192288867|ref|YP_001989472.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
           palustris TIE-1]
 gi|226702683|sp|B3QAB0|PNP_RHOPT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|192282616|gb|ACE98996.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris TIE-1]
          Length = 722

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 89/241 (36%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I     V     GS L   G+T  L   TL         ++  G    
Sbjct: 316 RIDGRDSKTVRNILAQVGVLPRTHGSALFTRGETQALVVTTLGTGEDEQYVDSLSGTYKE 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      ++  RA+  V+         I +  +
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHG----KLAWRAIHPVLPPHHEFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    ++  +    +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   + A  +++     L  AKD    ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTEQG-ITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSKA 541

Query: 238 I 238
           +
Sbjct: 542 L 542



 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 79/238 (33%), Gaps = 42/238 (17%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + L    V++ A+G+ +  +G+T +L T     +  E V        +       G +
Sbjct: 14  RPLKLETGKVARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLTVDYQEKAYAAGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +   + R+I R +R +         Q+I+       +    
Sbjct: 74  P---GGYFKRE---GRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                    KG + A   G +    +++     D   +
Sbjct: 128 VLAMVAASAAL-------------TLSGVPFKGPIGAARVGFINDEYVLNP--VLDEMAE 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHF---------------FAMLNLAKDRIAD 229
                V+  +   V +  S E    S++                  A+++LA+    +
Sbjct: 173 TQLELVVAGTADAVLMVES-EAKELSEEIMLGAVMFGHRHFQPVIDAIIDLAEKAAKE 229


>gi|163757756|ref|ZP_02164845.1| polynucleotide phosphorylase/polyadenylase [Hoeflea phototrophica
           DFL-43]
 gi|162285258|gb|EDQ35540.1| polynucleotide phosphorylase/polyadenylase [Hoeflea phototrophica
           DFL-43]
          Length = 706

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 89/243 (36%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R I     +     GS L   G+T  +  ATL           +  TK  
Sbjct: 317 RIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGTKKA 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +    +G  G R     ++  RA+  ++  +      + +  +
Sbjct: 377 TFMLHYNFPPYSVGETGR----TGSPGRREIGHGKLAWRAINPMMPSAEQFPYTLRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  + +G   A+         + D+
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGEDFAV---------LSDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   +    +++     L+ A+     ++K   + 
Sbjct: 484 LGDEDHLGDMDFKVAGTADG-ITALQMDIKIDGITEEIMKIALSQAEGGRLHILKEMGNA 542

Query: 238 ISN 240
           ++ 
Sbjct: 543 LTE 545



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 80/237 (33%), Gaps = 35/237 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + L    V++ A+G+ +  +G+T +L T     + +     +     +   T   G +
Sbjct: 14  RPLILETGKVARQADGAVIATYGETVVLATVVSAKSPKPGQDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR         R+I R LR +         QIII   V+Q D    
Sbjct: 74  P---GGYFKRE---GRPSENETLTSRLIDRPLRPLFPDGYKNDTQIIIT--VMQHDLENN 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
                         D L  +   +          G +A    G + G  +++    E   
Sbjct: 126 P-------------DILALVAASAALTISGIPFMGPIAGARVGYINGEYVLNPHVDEMPE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
            D+D     T+   ++     +E    ++D     +          I  +IKL +  
Sbjct: 173 SDLDLVVAGTNDAVLMV---ESEAKELAEDVMLGAVMFGHKSFQPVIDAIIKLAEAA 226


>gi|304396352|ref|ZP_07378233.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. aB]
 gi|304355861|gb|EFM20227.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. aB]
          Length = 711

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTTRDAQNLDELMGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKAEDFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDEKFVV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQEALNQAKGARLHILGV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISTP 544



 Score = 65.1 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 67/212 (31%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLISRLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVHPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMMGASAALALSGL-------------PFNGPIGAARVGYINDQYVLNPTADELKQSRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +  ++     +E    S++     +
Sbjct: 177 LVVAGTQNAVLMV---ESEAEILSEEQMLGAV 205


>gi|150016092|ref|YP_001308346.1| polynucleotide phosphorylase/polyadenylase [Clostridium
           beijerinckii NCIMB 8052]
 gi|187610256|sp|A6LSR0|PNP_CLOB8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|149902557|gb|ABR33390.1| Polyribonucleotide nucleotidyltransferase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 701

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 87/244 (35%), Gaps = 16/244 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R  GR  +Q+R +     +     G+ L   G T ++T ATL    E ++   I   +  
Sbjct: 312 RPDGRAFDQIRPLGCEIGILPRTHGTGLFTRGLTQVMTVATLGSISEIQILDGIDEAQSK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  RAL  ++         I +  +
Sbjct: 372 RYMHHYNFPGYSVGEVKPLRGPGRREIGHG----ALAERALEPLIPSEEEFPYTIRLVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A++ G+ +AL D    ++  +    +  +    ++           + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLS-------EEAVLTDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   +   FS +     +  A+     +I    + 
Sbjct: 481 QGIEDFFGDMDFKVAGTTEG-ITSIQVDTKLQGFSFNVVENAIRDARKARLTIIDKINEC 539

Query: 238 ISNE 241
           IS  
Sbjct: 540 ISTP 543



 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 78/236 (33%), Gaps = 31/236 (13%)

Query: 12  REISLT---RRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYG 64
           RE+ +      +   A       +GDT +LT         E +  +  + ++       G
Sbjct: 12  RELKVEFGKVGMLSNAA--TFTSYGDTVILTNVNASEQPREGIDFFPLSVEYEERLYAVG 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G  +KRE   GR   ++    R + R LR +         Q++     ++ D  
Sbjct: 70  KIP---GGFIKRE---GRPSEKAILNGRAVDRTLRPLFPKGYRNDVQVVTTVVSVEKDNL 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               AI  A +AL                S       AA+  G++ G  + + D      
Sbjct: 124 PEILAINAASLALC-------------LSSIPYTIPAAAVQVGIIDGKFVTNPDTQGREK 170

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             +      T    ++ ++   +     +D     +    D    +I  Q++ ++ 
Sbjct: 171 SILHLTVCATKE-RVMMIEAGGQEIP--EDTMIDAIKYGFDECQKIIAFQEEAVAK 223


>gi|37680881|ref|NP_935490.1| polynucleotide phosphorylase/polyadenylase [Vibrio vulnificus
           YJ016]
 gi|37199630|dbj|BAC95461.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus YJ016]
          Length = 725

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   K  
Sbjct: 333 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGEKKD 392

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
           +    Y   P   G      +   R+ G      ++  R + +V+         + +  +
Sbjct: 393 YFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSIDEFPYTVRVVSE 448

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 449 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 495

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     LN A+     ++ +
Sbjct: 496 LSDILGDEDHLGDMDFKVAGTSTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 554

Query: 234 QKDVISN 240
               IS 
Sbjct: 555 MDQAISG 561



 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE-EKVP---MWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +V   DT +  +   + E VP    +     +   T   G +P 
Sbjct: 34  VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVPGQDFFPLTVNYQERTYAAGKIP- 92

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +         Q+I     +  D      
Sbjct: 93  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPEGFNNEVQVIATVVSVNPDVQPDIP 147

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + A   G + G  +++    E +   +D
Sbjct: 148 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELNASRLD 194

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T+S  ++     +E    +++   + +    D+   +IK   +
Sbjct: 195 LVVAGTESAVLMV---ESEADNLTEEEMLSAVVFGHDQQQAVIKAINE 239


>gi|163867506|ref|YP_001608705.1| polynucleotide phosphorylase/polyadenylase [Bartonella tribocorum
           CIP 105476]
 gi|189037300|sp|A9IMR9|PNP_BART1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|161017152|emb|CAK00710.1| polyribonucleotide nucleotidyltransferase [Bartonella tribocorum
           CIP 105476]
          Length = 731

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR  + +R I     +     GS L   G+T  +  ATL         +   G    
Sbjct: 317 RIDGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVATLGTGEDEQYIDALTGMYKE 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++         I    +
Sbjct: 377 TFLLHYNFPPFSVGETGR----LGSPGRREIGHGKLAWRAIHPMLPTKESFPYTIRAVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  + +G   A+         + D+
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAV---------LSDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   +    +++     L  AKD    ++      
Sbjct: 484 LGDEDHLGDMDFKVAGTENG-ITALQMDIKIDGITEEIMKIALEQAKDGRIHILNEMAKA 542

Query: 238 ISN 240
           +++
Sbjct: 543 LTS 545



 Score = 82.1 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 79/229 (34%), Gaps = 31/229 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R ++L    +++ A+G+ +  +G+T +L T     + +     +     +   +   G +
Sbjct: 14  RPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEKSYAVGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G  +KRE+   R       + R+I R +R +         Q+I+   VIQ D    
Sbjct: 74  P---GGYLKRES---RPSENETLVSRLIDRPIRPLFVEGYKNDTQVIVS--VIQHDLENN 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  +  AL                     G +A    G   G  +++    E   
Sbjct: 126 PDILAMIASSAAL-------------TLSGVPFMGPIAGARVGYCNGQYVLNPHMDEMPE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
             +D     T+S  ++     +E     +D     +      +  ++  
Sbjct: 173 SKLDLVVAGTESAVLMV---ESEAQELPEDIMLGAVMFGHKGLQPVLDA 218


>gi|118443480|ref|YP_878203.1| polynucleotide phosphorylase/polyadenylase [Clostridium novyi NT]
 gi|187610259|sp|A0Q0Q1|PNP_CLONN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|118133936|gb|ABK60980.1| polyribonucleotide nucleotidyltransferase [Clostridium novyi NT]
          Length = 705

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 86/236 (36%), Gaps = 16/236 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R  GR  +++R +S    +     GS L   G T +++ ATL    E +V   I      
Sbjct: 312 RPDGRYFDEIRPLSSEVSLLPRTHGSGLFTRGLTQVMSVATLGSISEGQVLDGIEEETSK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G        + R+ G       +  +A+  ++         I +  +
Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPNRREIGHG----ALAEKAIEPLIPSEQEFPYAIRVVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A++ G+ +AL D    M+  +    +  V    +            + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPMKRPAAGIAMGLVTSEDLE-------KEEILTDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
              ED   D+D     T+ G I  +Q   +    S D     +  A+     ++++
Sbjct: 481 QGLEDFFGDMDFKVAGTEKG-ITAIQVDTKIKGLSNDCIKKAITNARKARLTILEV 535



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 74/215 (34%), Gaps = 26/215 (12%)

Query: 30  VKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGG 85
           + +GDT +L         +E +  +  + ++       G +P   G  +KRE   GR   
Sbjct: 31  ISYGDTVVLVNVNASPEPKEGIDFFPLSIEYQERLYAVGKIP---GGFIKRE---GRPSD 84

Query: 86  RSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHME 145
           ++    R I R LR +         Q++     +  D      A+ GA +AL        
Sbjct: 85  KAILNARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDNLPNILAMNGASLALC------- 137

Query: 146 DCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
                   S      V  +S G++ G  I++    +     +D     T    ++ ++  
Sbjct: 138 ------LSSIPFTIPVGTVSVGLIDGEFIINPTSKQREESILDLTVCATKD-RVMMIEAG 190

Query: 206 AERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            E     +D  +  +    +    +   Q+ V+  
Sbjct: 191 GEEIP--EDVMYDAIMFGFEECKKIADFQQKVMEQ 223


>gi|116249886|ref|YP_765724.1| polynucleotide phosphorylase/polyadenylase [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|123385010|sp|Q1MN44|PNP_RHIL3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|115254534|emb|CAK05608.1| putative Polynribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 712

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 316 RIDGRNLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++         + +  +
Sbjct: 376 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPTPEQFPYTLRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   +    +++     L  A+     ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKITGITEEIMKVALGQAQGGRVHILGEMSKA 541

Query: 238 ISN 240
           I+ 
Sbjct: 542 ITE 544



 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 72/222 (32%), Gaps = 31/222 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ L  +G+T +L T       +     +     +   T   G +
Sbjct: 14  RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKAGQDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR   +   + R+I R +R +         Q+++   VIQ D    
Sbjct: 74  P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVT--VIQHDLEND 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++     AL                     G V     G + G  +++    E   
Sbjct: 126 PDVLSMVATSAAL-------------TLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             +D     T    ++     +E    ++D     +      
Sbjct: 173 SSLDLVVAGTYDAVLMV---ESEAKELNEDVMLGAVMFGHKG 211


>gi|168187902|ref|ZP_02622537.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum C
           str. Eklund]
 gi|169294241|gb|EDS76374.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum C
           str. Eklund]
          Length = 705

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 86/236 (36%), Gaps = 16/236 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R  GR  +++R +S    +     GS L   G T +++ ATL    E +V   I      
Sbjct: 312 RPDGRSFDEIRPLSSEVSLLPRTHGSGLFTRGLTQVMSVATLGSVSEGQVLDGIEEETLK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G        + R+ G       +  +A+  ++         I +  +
Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPNRREIGHG----ALAEKAIEPLIPSEQEFPYAIRVVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A++ G+ +AL D    ++  +    +  V    +            + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPLKRPAAGIAMGLVTSEDLE-------KEEILTDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
              ED   D+D     T+ G I  +Q   +    S D     +  A+     ++++
Sbjct: 481 QGLEDFFGDMDFKVAGTEKG-ITAIQVDTKIKGLSNDCIKKAITNARKARLTILEV 535



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 74/215 (34%), Gaps = 26/215 (12%)

Query: 30  VKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGG 85
           + +GDT +L         +E +  +  + ++       G +P   G  +KRE   GR   
Sbjct: 31  ISYGDTVVLVNVNASPEPKEGIDFFPLSIEYQERLYAVGKIP---GGFIKRE---GRPSD 84

Query: 86  RSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHME 145
           ++    R I R LR +         Q++     +  D      A+ GA +AL        
Sbjct: 85  KAILNARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDNLPNILAMNGASLALC------- 137

Query: 146 DCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
                   S      V  +S G++ G  +++    +     +D     T    ++ ++  
Sbjct: 138 ------LSSIPFTTPVGTVSVGLVDGEFVINPTSKQREESILDLTVCATKD-RVMMIEAG 190

Query: 206 AERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            E     +D  +  +    +    +   Q+ V+  
Sbjct: 191 GEEIP--EDVMYDAIMFGFEECKKIANFQQKVMEQ 223


>gi|127513750|ref|YP_001094947.1| polynucleotide phosphorylase/polyadenylase [Shewanella loihica
           PV-4]
 gi|187611300|sp|A3QGU0|PNP_SHELP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|126639045|gb|ABO24688.1| Polyribonucleotide nucleotidyltransferase [Shewanella loihica PV-4]
          Length = 700

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ + +R +S+   V     GS L   G+T  L T TL  +      ++  G  T+
Sbjct: 314 RIDGREPDMVRALSVMAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGEQTS 373

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      ++  R + +V+  +      I +  +
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGIHAVMPTAEEFPYSIRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A      ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-VTALQMDIKIEGITKEIMQIALQQAYGARVHILNV 535

Query: 234 QKDVISNE 241
               IS  
Sbjct: 536 MDQAISGH 543



 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 76/228 (33%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A+ + L   GDT +L T       E     +     +   T   G +P 
Sbjct: 15  VTLETGVIARQADAAVLASMGDTTVLVTVVGKKAEEPGRDFFPLTVNYQEKTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +         Q+II    +  +      
Sbjct: 74  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEISPEVI 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + +   G + G  I++    +     ++
Sbjct: 129 SMIGTSAALSISGI-------------PFNGPLGSARVGYVDGEYILNPTVSQLENSQLE 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            +   T++  ++     +E     ++     +    ++   +I+  K+
Sbjct: 176 LSVAGTENAVLMV---ESEADALPEEVMLGAVVYGHEQQQVVIQAIKE 220


>gi|27365068|ref|NP_760596.1| polynucleotide phosphorylase/polyadenylase [Vibrio vulnificus
           CMCP6]
 gi|320155451|ref|YP_004187830.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus
           MO6-24/O]
 gi|81448563|sp|Q8DBU9|PNP_VIBVU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611443|sp|Q7MI20|PNP_VIBVY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|27361214|gb|AAO10123.1| Polyribonucleotide nucleotidyltransferase [Vibrio vulnificus CMCP6]
 gi|319930763|gb|ADV85627.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus
           MO6-24/O]
          Length = 708

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   K  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
           +    Y   P   G      +   R+ G      ++  R + +V+         + +  +
Sbjct: 376 YFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSIDEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +++     LN A+     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTSTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537

Query: 234 QKDVISN 240
               IS 
Sbjct: 538 MDQAISG 544



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE-EKVP---MWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +V   DT +  +   + E VP    +     +   T   G +P 
Sbjct: 17  VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVPGQDFFPLTVNYQERTYAAGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +         Q+I     +  D      
Sbjct: 76  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPEGFNNEVQVIATVVSVNPDVQPDIP 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + A   G + G  +++    E +   +D
Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELNASRLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T+S  ++     +E    +++   + +    D+   +IK   +
Sbjct: 178 LVVAGTESAVLMV---ESEADNLTEEEMLSAVVFGHDQQQAVIKAINE 222


>gi|126736200|ref|ZP_01751943.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. CCS2]
 gi|126714366|gb|EBA11234.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. CCS2]
          Length = 710

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 91/246 (36%), Gaps = 27/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR  + +R I     +     GS L   G+T  L   TL       + +   G    
Sbjct: 318 RIDGRALDTIRPIVSETGILPRTHGSALFTRGETQGLVVTTLGTGDDEQMIDALTGMYKS 377

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      ++  RAL++V+  +      I +  +
Sbjct: 378 NFMLHYNFPPYSVGEVGRVSGPGRREIGHG----KLAWRALQAVLPAATDFPYTIRLVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGY-- 172
           + +++G +  A++ G  +++ D                 LK  VA ++ G++    G   
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLVMEDDGEYA 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T++G I  +Q   + A  + +     L  AK     ++ 
Sbjct: 481 ILSDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKIAGITPEIMSKALAQAKAGRLHILG 539

Query: 233 LQKDVI 238
                +
Sbjct: 540 EMGKAL 545



 Score = 78.2 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 81/231 (35%), Gaps = 33/231 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70
           ++L    V++ A+GS +   G+T ++   T   K            +T  Y     +   
Sbjct: 16  LTLETGKVARQADGSVIATLGETSVMANVTFARKQKP---GQDFFPLTVHYQEKYYAAGK 72

Query: 71  --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++ C V+  D      
Sbjct: 73  VPGGFFKREA---RPTEKETLTSRLIDRPIRPLFVPGF--KNEVLVMCTVLSHDMVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD----YGED 182
             A+  A  AL                    +G +AA   G   G  I++ +    +   
Sbjct: 128 MVAMIAASAALTISGA-------------PFRGPIAACRVGFEDGEYILNPEIDDMHNLR 174

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
              +   + V+  +   V +  S E    ++D     +  A ++I  +I L
Sbjct: 175 LNPEQRLDLVVAGTKDAVMMVES-EAYELTEDEMLGAVTFAHEQIQPVIDL 224


>gi|229815242|ref|ZP_04445578.1| hypothetical protein COLINT_02288 [Collinsella intestinalis DSM
           13280]
 gi|229809252|gb|EEP45018.1| hypothetical protein COLINT_02288 [Collinsella intestinalis DSM
           13280]
          Length = 714

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 92/251 (36%), Gaps = 38/251 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   ++R I +         GS L + G T +L+  +L       + N      T 
Sbjct: 319 RVDGRTAAEIRPIMVKGDYLPLVHGSGLFQRGQTQVLSVLSLG------MLNEGQRLDTI 372

Query: 62  E----------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
           E          Y   P  TG   +      R+ G       +  RAL  V+         
Sbjct: 373 EPVDGKRYMHHYNFPPYCTGETGRMGTPKRREIGHG----NLAERALIPVLPDENEFPYA 428

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
           I +  +V++++G +  A+  G+ +AL D                 +K  V+ I+ G++  
Sbjct: 429 IRVVSEVMESNGSSSMASTCGSCLALMD-------------GGVPIKRPVSGIAMGLIQE 475

Query: 172 Y----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                 + D+   ED   D+D     T+ G I  +Q   +    + D     L  AK+  
Sbjct: 476 EGKTVVLSDIQGLEDFLGDMDFKVTGTEKG-ITALQMDNKATGLTFDILRTALEQAKEGR 534

Query: 228 ADLIKLQKDVI 238
           A ++    +V+
Sbjct: 535 AYILDKMLEVV 545



 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 80/231 (34%), Gaps = 28/231 (12%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRSTG 71
                ++K A G+ LVK GD+ +LTT  + ++      +             G +P   G
Sbjct: 17  FEVGELAKQATGAALVKQGDSTVLTTVVVSKERKNYDFFPLTVDFNEKMYAAGRIP---G 73

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
             +KRE   GR   ++    RMI R +R           Q++    V           + 
Sbjct: 74  GYLKRE---GRPSEKATLTARMIDRPIRPSFPDGFRNEVQVVATSLVADQKNPVDVICVM 130

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG--MLCGYPIVDLDYGEDSTIDVDA 189
           GA +A+                    +G +A +  G     G  IV+  Y E    D+D 
Sbjct: 131 GASLAM-------------TIGGVPFEGPLACVRIGRDKETGEFIVNPTYEERENSDLDL 177

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
               T    I  V+  AE    S++   A +   ++ I      Q + +  
Sbjct: 178 ELAGTRDF-ISMVEAGAEE--VSEEDMLAAMQFGQEAIGAFCDAQLEFVEE 225


>gi|260806963|ref|XP_002598353.1| hypothetical protein BRAFLDRAFT_261208 [Branchiostoma floridae]
 gi|229283625|gb|EEN54365.1| hypothetical protein BRAFLDRAFT_261208 [Branchiostoma floridae]
          Length = 444

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 92/260 (35%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GRQ    R + ++  + +   G C+V  GDT +L   + + + P   R    G I  
Sbjct: 23  RIDGRQTYDYRRLKVSFGMER---GCCIVDLGDTKVLAQVSGKIEEPKKNR-PTEGSIII 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSR------QII 113
              + P ++          GR      E+ R++ R +R    VD  +L          I 
Sbjct: 79  NLELSPMASPA-----FEPGRPTESGIEMNRILERNIRDSRAVDTESLCIVAGEKVWSIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
            D  V+  +G    AA   A  AL    +           +    ++  +   +      
Sbjct: 134 ADVHVLNDEGNIMDAASIAAITALSHFRRPDVSVMGEEVTVHSPEDRDPVPLSVHHMPVC 193

Query: 164 ISCGMLC--GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           ++        + +VD +  E+  +D      M     I  +  S       ++       
Sbjct: 194 VTFAFFDQGEFLLVDPNRSEERVMDGRMVVGMNMHREICTLMMSG-GMLLVKEQVLRCSQ 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++I+L +  +  +
Sbjct: 253 IATVKVAEIIELIQRALDKD 272


>gi|730350|sp|P41121|PNP_PHOLU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=CAP87K; AltName: Full=Polynucleotide phosphorylase;
           Short=PNPase
 gi|561531|emb|CAA53671.1| polynucleotide phosphorylase [Photorhabdus luminescens]
          Length = 709

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 100/248 (40%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +    I +   G  T 
Sbjct: 315 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 375 RFLLHYNFPPYSVGETGMMGSPKRREIGHG----RLAKRGVLAVMPKANEFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSCEG-ISALQMDIKIEGITREIMQVALNQAKGARLHILSV 536

Query: 234 QKDVISNE 241
            +  I+  
Sbjct: 537 MEQAITTP 544



 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 72/212 (33%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           +++   +  + A  + +V   DT +  T   ++KV           +T  Y     + G 
Sbjct: 16  VTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKV---KAGQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR G     + R+I R LR +     L   +I+     +         
Sbjct: 73  IPGSFFRRE---GRPGEGETLVARLIDRPLRPLFPEGFLNEVRIVATVVSVNPQINPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALALSGI-------------PFNGPIGAARVGYINDQYVLNPTSDELKNSRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +G ++ V+  +E    +++     +
Sbjct: 177 LVVSGT-AGAVLMVE--SEADLLTEEQMLGAV 205


>gi|255531752|ref|YP_003092124.1| polyribonucleotide nucleotidyltransferase [Pedobacter heparinus DSM
           2366]
 gi|255344736|gb|ACU04062.1| Polyribonucleotide nucleotidyltransferase [Pedobacter heparinus DSM
           2366]
          Length = 716

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 89/249 (35%), Gaps = 28/249 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +RL GR    +R I         A GS +   G+T  LTT TL  K    + +      +
Sbjct: 316 IRLDGRDVRTVRPIWSEVGYLPAAHGSAVFTRGETQSLTTVTLGSKDDEQMIDGAFINGY 375

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     STG          R+ G       +  R+L+ V+         I I  
Sbjct: 376 NKFLLHYNFPGFSTGEVRPNRGAGRREIGHG----NLAMRSLKKVLPGLEENPYTIRIVS 431

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           D+++++G +  A +    +AL D                 +K  V+ I+ G++       
Sbjct: 432 DILESNGSSSMATVCAGTLALMDAGVK-------------IKAPVSGIAMGLITDEKSGK 478

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T+ G IV  Q   +      +     LN AK+    +
Sbjct: 479 YAILSDILGDEDHLGDMDFKVTGTEKG-IVACQMDLKINGLKWEVLTNALNQAKEARLHI 537

Query: 231 IKLQKDVIS 239
           +   K  I+
Sbjct: 538 LNEMKKTIA 546



 Score = 88.2 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 86/230 (37%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R I +      K A+G+ +VK GDT LL T       +  V     +  +    A  G +
Sbjct: 14  RTIEIETGKLAKQADGAVVVKMGDTMLLATVVSTVGAKAGVDFLPLSVDYQEKYAAAGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  ++REA   R       I R++ RALR +         Q++I   +I +D    
Sbjct: 74  P---GGFLRREA---RLSDYEVLISRLVDRALRPMFPEDYHSDTQVMIS--LISSDKNI- 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                     + DCL  +   +          G ++ +    + G  +++    +    D
Sbjct: 125 ----------MPDCLAGLAASAAIAVSDIPFNGPISEVRVARIDGKFVINPYVTDLERAD 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           ++     T+   IV V+G  E    S+      +  A   I   ++ QK+
Sbjct: 175 IEFLVAGTEKD-IVMVEG--ECNEISETEMVEAIEFAHKAIVIQVQAQKE 221


>gi|162147166|ref|YP_001601627.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209544221|ref|YP_002276450.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|187610270|sp|A9HF35|PNP_GLUDA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|161785743|emb|CAP55314.1| putative polyribonucleotide nucleotidyltransferase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531898|gb|ACI51835.1| Polyribonucleotide nucleotidyltransferase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 712

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I     +   A GS L   G+T  L  ATL    +E+V   +      
Sbjct: 314 RIDGRDLKTVRPIVSEVGILPRAHGSALFTRGETQALVVATLGTAQDEQVIDALEGEYRT 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R    GR   R     ++  RA+  ++         + I  +
Sbjct: 374 NFMLHYNFPPYSVGE-CGRMGSPGR---REIGHGKLAWRAIHPLLPGKDTFPYTMRIVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GYPI 174
           + +++G +  A + G  +AL D                 LK  VA I+ G++    G+ +
Sbjct: 430 ITESNGSSSMATVCGTSLALMDAGV-------------PLKRPVAGIAMGLIKEDRGFAV 476

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+SG I  +Q   +  + + +     L  A+D    ++  
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTESG-ITALQMDIKITSITPEIMKIALGQARDGRLHILGE 535

Query: 234 QKDVISN 240
               ++ 
Sbjct: 536 MSKALTE 542



 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 75/227 (33%), Gaps = 27/227 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + L    +++ A+G+ +V +GDT +L TA     V           +T  Y     + 
Sbjct: 14  RPLVLETGKIARQADGAVVVTYGDTVVLCTAVGARSVKP---GQDFFPLTVNYQEKAFAA 70

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G       KRE   GR         R+I R +R +   +     Q++        +    
Sbjct: 71  GKIPGGFFKRE---GRPSEIEVLNSRLIDRPIRPLFPENFRNEVQVVATVLSHDLENDPA 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ G   AL                     G VAA   G   G  I++    E     
Sbjct: 128 IAALIGCSAALTLSGI-------------PFFGPVAACRVGYADGAYILNPTLPEMKESA 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +D     T  G ++     +E +  S+D     +    +    +I  
Sbjct: 175 LDLVVAGTSEGVLMV---ESEASELSEDVMLGAVTFGHEAFQAVIDA 218


>gi|237823993|pdb|3H1C|A Chain A, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237823995|pdb|3H1C|B Chain B, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237823997|pdb|3H1C|C Chain C, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237823999|pdb|3H1C|G Chain G, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237824001|pdb|3H1C|I Chain I, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237824003|pdb|3H1C|K Chain K, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237824005|pdb|3H1C|M Chain M, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237824007|pdb|3H1C|O Chain O, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237824009|pdb|3H1C|R Chain R, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237824011|pdb|3H1C|T Chain T, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237824013|pdb|3H1C|V Chain V, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
 gi|237824015|pdb|3H1C|X Chain X, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core Bound To Rnase E And Tungstate
          Length = 549

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 536 VMEQAIN 542



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226


>gi|241207064|ref|YP_002978160.1| polynucleotide phosphorylase/polyadenylase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240860954|gb|ACS58621.1| Polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 712

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 316 RIDGRNLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++         + +  +
Sbjct: 376 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPTPEQFPYTLRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   +    +++     L  A+     ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTADG-ITSLQMDIKITGITEEIMKVALGQAQGGRVHILGEMSKA 541

Query: 238 ISN 240
           I+ 
Sbjct: 542 ITE 544



 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 72/222 (32%), Gaps = 31/222 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ L  +G+T +L T       +     +     +   T   G +
Sbjct: 14  RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKAGQDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR   +   + R+I R +R +         Q+++   VIQ D    
Sbjct: 74  P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVT--VIQHDLEND 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++     AL                     G V     G + G  +++    E   
Sbjct: 126 PDVLSMVATSAAL-------------TLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             +D     T    ++     +E    ++D     +      
Sbjct: 173 SSLDLVVAGTYDAVLMV---ESEAKELNEDIMLGAVMFGHKG 211


>gi|319406539|emb|CBI80181.1| polyribonucleotide nucleotidyltransferase [Bartonella sp. 1-1C]
          Length = 733

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 88/246 (35%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR  + +R I     +     GS L   G+T  L  ATL         ++  G    
Sbjct: 317 RIDGRNLSDVRSIQSEVGILPRTHGSALFTRGETQALVIATLGTGEDEQYIDSLTGMYKE 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++         I    +
Sbjct: 377 TFLLHYNFPPFSVGEIGR----IGSPGRREIGHGKLAWRAIHPMLPTKESFPYTIRTVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A + G  +AL D                 L   VA I+ G++  G     
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGV-------------PLANPVAGIAMGLIKEGEQFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G I  +Q   +    +++     L  AKD    ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNE 538

Query: 234 QKDVIS 239
               ++
Sbjct: 539 MAKALA 544



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 80/233 (34%), Gaps = 35/233 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ L  +G+T +L T       +     +     +       G +
Sbjct: 14  RPLILETGKIARQADGAILATYGETVVLATVVSAKIPKPDQNFFPLTVNYQEKNYAVGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G  +KRE    R       I R+I R +R +         Q+I+   VIQ D    
Sbjct: 74  P---GGYLKRE---NRPSESETLISRLIDRPIRPLFVDGYKNDTQVIVS--VIQHDLENN 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               AI  +  AL                     G +AA   G   G  I++ +  E   
Sbjct: 126 PDILAIIASSAALTLSGI-------------PFMGPIAAARIGYCNGQYILNPNIDEMPE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKL 233
             +D     T++  ++     +E     +D     +   +      I  +IKL
Sbjct: 173 SKLDLVVAGTENAVLMV---ESEAHELPEDVMLDAVMFGQKSFQPVINAIIKL 222


>gi|217035383|pdb|3CDJ|A Chain A, Crystal Structure Of The E. Coli KhS1 DOMAIN TRUNCATED
           Pnpase
          Length = 559

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 321 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 380

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 381 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 435

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 436 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 482

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 483 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 541

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 542 VMEQAIN 548



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 22  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 78

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 79  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 135

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 136 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 182

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 183 LVVAGTEAAVLMV---ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 232


>gi|28899226|ref|NP_798831.1| polynucleotide phosphorylase/polyadenylase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153838303|ref|ZP_01990970.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           AQ3810]
 gi|260362211|ref|ZP_05775195.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           K5030]
 gi|260879079|ref|ZP_05891434.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           AN-5034]
 gi|260897750|ref|ZP_05906246.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|260900806|ref|ZP_05909201.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           AQ4037]
 gi|81727008|sp|Q87M06|PNP_VIBPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|28807450|dbj|BAC60715.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149748292|gb|EDM59151.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           AQ3810]
 gi|308088979|gb|EFO38674.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|308089536|gb|EFO39231.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           AN-5034]
 gi|308108195|gb|EFO45735.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           AQ4037]
 gi|308111467|gb|EFO49007.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           K5030]
          Length = 711

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGERKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     LN A+     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTSTG-VTALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537

Query: 234 QKDVISN 240
             + ++ 
Sbjct: 538 MDEALAG 544



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 76/234 (32%), Gaps = 35/234 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + +V   DT +  +   +++    +       +T  Y     + G 
Sbjct: 17  VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEA---VAGQDFFPLTVNYQERTYAAGK 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR         R+I R +R +   +     Q+I     +  D      
Sbjct: 74  IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIP 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + A   G + G  +++    E +   +D
Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSQTELNASRLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                T+S  ++     +E    +++   A +    D        Q+ V+ N +
Sbjct: 178 LVVAGTESAVLMV---ESEADNLTEEEMLAAVVFGHD--------QQQVVINAI 220


>gi|239781891|pdb|3GCM|A Chain A, Crystal Structure Of E. Coli Polynucleotide Phosphorylase
           Bound To Rna And Rnase E
 gi|239781893|pdb|3GCM|B Chain B, Crystal Structure Of E. Coli Polynucleotide Phosphorylase
           Bound To Rna And Rnase E
 gi|239781895|pdb|3GCM|C Chain C, Crystal Structure Of E. Coli Polynucleotide Phosphorylase
           Bound To Rna And Rnase E
 gi|239781908|pdb|3GLL|A Chain A, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
           Core
 gi|239781910|pdb|3GME|A Chain A, Crystal Structure Of Polynucleotide Phosphorylase In
           Complex With Rnase E And Manganese
          Length = 549

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 536 VMEQAIN 542



 Score = 71.7 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226


>gi|156935691|ref|YP_001439607.1| polynucleotide phosphorylase/polyadenylase [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156533945|gb|ABU78771.1| hypothetical protein ESA_03557 [Cronobacter sakazakii ATCC BAA-894]
          Length = 690

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 96/246 (39%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 297 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGERTD 356

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 357 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPAADRFPYTVRVVSE 412

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 413 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGENFVV 459

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 460 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITKEIMQVALNQAKGARLHILGV 518

Query: 234 QKDVIS 239
            +  I+
Sbjct: 519 MEQAIN 524



 Score = 68.2 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 72/224 (32%), Gaps = 30/224 (13%)

Query: 22  KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKRE 77
           + A  + +V   DT +  T       +     +     +   T   G +P   G   +RE
Sbjct: 4   RQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERTYAAGRIP---GGFFRRE 60

Query: 78  AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137
              GR       I R+I R LR +     +   Q+I     +         A+ GA  AL
Sbjct: 61  ---GRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAAL 117

Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197
                                G + A   G +    +++    E  +  +D     T+S 
Sbjct: 118 SLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKSSKLDLVVAGTESA 164

Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
            ++     +E    S+D     +    ++    I ++  L K+ 
Sbjct: 165 VLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVKEA 205


>gi|332291156|ref|YP_004429765.1| polyribonucleotide nucleotidyltransferase [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169242|gb|AEE18497.1| polyribonucleotide nucleotidyltransferase [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 741

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 82/244 (33%), Gaps = 20/244 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKH 56
           +RL GR+  ++R I           GS +   G+T  L T TL             +   
Sbjct: 317 LRLDGRKTTEIRPIWSEVDYLPSVHGSAIFTRGETQALATVTLGTSRDANKIDMPSHEGE 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P  TG        S R+ G       +  R L+ ++         + +  
Sbjct: 377 ENFYLHYNFPPFCTGEARPIRGTSRREVGHG----NLAQRGLKGMIPAD--CPYTVRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175
           +V++++G +  A +    +A+ D    M    +   +          IS G    Y ++ 
Sbjct: 431 EVLESNGSSSMATVCAGTMAMMDAGIQMTKPVSGIAMG--------LISDGASGKYAVLS 482

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T  G I   Q   +    S +     L  A+     ++    
Sbjct: 483 DILGDEDHLGDMDFKVTGTADG-ITACQMDIKVKGLSYEILVNALQQARAGRLHILDKIT 541

Query: 236 DVIS 239
           + I+
Sbjct: 542 ETIA 545



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 74/227 (32%), Gaps = 26/227 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           REIS+      K A GS +V+ G   LL T       + +        +    A  G  P
Sbjct: 16  REISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEAKDLDFLPLTVDYREKFAAAGRYP 75

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KREA        +    R++ R LR +         Q++I       D     
Sbjct: 76  ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKDYHSETQVMIQLMSHDDD----- 124

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                    + D +  +   +         +  ++    G + G  I++    +    D+
Sbjct: 125 --------VMPDAMAGLAASAAIQLSDFPFECAISEARVGRVNGEFIINPTRAQLEESDI 176

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D   +   +  ++ V+G  E    S++     +  A D I      Q
Sbjct: 177 DM-MIGASADSVMMVEG--EMDEISEEEMADAIKFAHDHIKVQCAAQ 220


>gi|297819162|ref|XP_002877464.1| hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323302|gb|EFH53723.1| hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 242

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 76/211 (36%), Gaps = 27/211 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R ++ +R +     GS     GDT +L      +       N +      
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKACFEV 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            +                +G+ G   +E + ++ R ++S+  L+   +    +   V+  
Sbjct: 65  IWK-------------PKTGQIGKVEKEYEMIMKRTIQSICVLTVNPNTTTSVIIQVVHD 111

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DG     AI  A  AL D    M+  +            VA   C    GY ++D +  E
Sbjct: 112 DGSLLPCAINAACAALVDAGIPMKHLA------------VAICCCLADNGYLVLDPNKLE 159

Query: 182 DSTIDVDANFVMTDSGHIVEVQGS--AERAT 210
           +  +   A  V  ++   V  +GS  AE   
Sbjct: 160 EKKMTAFAYLVFPNTTLSVLPEGSSVAEGEP 190


>gi|218194134|gb|EEC76561.1| hypothetical protein OsI_14380 [Oryza sativa Indica Group]
          Length = 238

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 71/198 (35%), Gaps = 27/198 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R  S TR     A GS     GDT +L      +       N +   I  
Sbjct: 5   RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEV 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            +               ++G+ G + +E +  + R L+S+  L+   +    +   V+  
Sbjct: 65  VWK-------------PMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGN 111

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYG 180
           DG     AI     AL                   LK    AI CG+L  G  I+D +  
Sbjct: 112 DGSLLPCAINACCAALVFAGI-------------PLKHLAVAIGCGVLEDGEVILDTNKA 158

Query: 181 EDSTIDVDANFVMTDSGH 198
           E+  +   A+ V  +S  
Sbjct: 159 EEQQLKSFAHLVFPNSRK 176


>gi|149924682|ref|ZP_01913032.1| polynucleotide phosphorylase/polyadenylase [Plesiocystis pacifica
           SIR-1]
 gi|149814439|gb|EDM74030.1| polynucleotide phosphorylase/polyadenylase [Plesiocystis pacifica
           SIR-1]
          Length = 698

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 90/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R + +     +   GS L + G+T  +TT TL  +      +T  G +  
Sbjct: 308 RVDGRGLTDIRALHIEVHPFERPHGSALFQRGETQAITTTTLGTERDAQRLDTIRGDVNN 367

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G        S R+ G       +  RAL  V+  +      + +  D
Sbjct: 368 TFLLHYNFPPYCVGEARPMRGTSRREQGHG----ALAHRALTPVMPDTESFPYTLRVVSD 423

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
             +++G +  AA+ G  ++L D                 +K  VA I+ G++        
Sbjct: 424 TTESNGSSSMAAVCGGCLSLMDAGV-------------PIKAPVAGIAMGLIQEGDKIAV 470

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    ++D     L  A+     +++ 
Sbjct: 471 LSDILGDEDHLGDMDFKCCGTKDG-ITALQMDIKIHGLTRDILETALEQARAGRLHILEA 529

Query: 234 QKDVISNE 241
             + +   
Sbjct: 530 MLEKLPEP 537



 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 76/228 (33%), Gaps = 31/228 (13%)

Query: 13  EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRS 69
           EI            + ++  G+T +L  AT+  +   +P      +     A  G +P  
Sbjct: 14  EIGFETGRIAKQANTVIMTLGETAVLVAATMSREPKDLPFMPLTVEFRSANAAAGKIP-- 71

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTRT 127
            G   KRE   GR       + R+  R +R +         QI+    V+  D       
Sbjct: 72  -GGYFKRE---GRPTVEEILVCRLTDRPIRPLFPKGYRYDTQIV--SQVLSNDLQNEPDV 125

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA  AL                     G VA I    + G  +    +  D     
Sbjct: 126 LAMTGASAAL-------------MISPAPWAGPVAGIRVARVDGELVAFPTF--DQIQQA 170

Query: 188 DAN-FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D N  V      IV V+  AE    S+      L  AK++   LI+ Q
Sbjct: 171 DLNLIVSCSRDAIVMVEAGAEG--ISESDMIDALMFAKEQSLPLIEAQ 216


>gi|187611310|sp|Q31W43|PNP_SHIBS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|320186653|gb|EFW61377.1| Polyribonucleotide nucleotidyltransferase [Shigella flexneri CDC
           796-83]
          Length = 711

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 101/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R++ +V+ D+       + +  
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRSVLAVMPDMDKFP-YTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 536 VMEQAIN 542



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226


>gi|328474238|gb|EGF45043.1| polynucleotide phosphorylase/polyadenylase [Vibrio parahaemolyticus
           10329]
          Length = 711

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGERKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     LN A+     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTSTG-VTALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537

Query: 234 QKDVISN 240
             + ++ 
Sbjct: 538 MDEALAG 544



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 76/234 (32%), Gaps = 35/234 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + +V   DT +  +   +++    +       +T  Y     + G 
Sbjct: 17  VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEA---VAGQDFFPLTVNYQERTYAAGK 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR         R+I R +R +   +     Q+I     +  D      
Sbjct: 74  IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIP 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + A   G + G  +++    E +   +D
Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSQTELNASRLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                T+S  ++     +E    +++   A +    D        Q+ V+ N +
Sbjct: 178 LVVAGTESAVLMV---ESEADNLTEEEMLAAVVFGHD--------QQQVVINAI 220


>gi|261212242|ref|ZP_05926528.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC341]
 gi|260838850|gb|EEX65501.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC341]
          Length = 709

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   K  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSVDEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G+ +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     LN AK     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537

Query: 234 QKDVIS 239
               IS
Sbjct: 538 MDQAIS 543



 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 74/234 (31%), Gaps = 35/234 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + +    DT +  +   +++    +       +T  Y     + G 
Sbjct: 17  VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR         R+I R +R +         Q+I+    +  D      
Sbjct: 74  IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIVTVVSVNPDVQPDII 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++    E     +D
Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                TD+  ++     +E    +++   A +    D        Q+  + N +
Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHD--------QQQAVINAI 220


>gi|311747141|ref|ZP_07720926.1| polyribonucleotide nucleotidyltransferase [Algoriphagus sp. PR1]
 gi|126578849|gb|EAZ83013.1| polyribonucleotide nucleotidyltransferase [Algoriphagus sp. PR1]
          Length = 712

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 16/242 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           RL GR+ N++R I         A GS +   G+T  LTT TL  K+   + +    + + 
Sbjct: 319 RLDGRKLNEVRPIWSVVDYLPSAHGSAVFTRGETQSLTTCTLGTKMDEMMVDGATISGYN 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     STG          R+ G       +  RAL+ V+  +      I I  D
Sbjct: 379 KFYLHYNFPGFSTGEVKPNRGPGRREVGHG----NLAMRALKKVLPPAEENPYTIRIVSD 434

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +++++G +  A +    +A+ D    ++       +     G ++  + G      + D+
Sbjct: 435 ILESNGSSSMATVCAGSLAMMDAGIQIKSAVTGIAM-----GMISDANTGKYS--ILSDI 487

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I   Q   +            L  AK+    ++      
Sbjct: 488 LGDEDHLGDMDFKVTGTSQG-ITACQMDLKVEGLDYSVLKEALLQAKEGRLHILDEITKT 546

Query: 238 IS 239
           ++
Sbjct: 547 LA 548



 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 76/230 (33%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           REI +      K A+GS +VK G   LL T        E V     +  +    A  G +
Sbjct: 16  REIIIETGALAKQADGSVVVKMGKAMLLATVVSKKEAGEGVDFLPMSVDYQEKFASTGKI 75

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR       I R++ RA+R +         QI I            
Sbjct: 76  P---GGFLKRE---GRLSDYEILISRIVDRAIRPIFPDDYHADTQIAITL---------- 119

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              ++G    L D L  +   +          G ++ +    + G   ++    E     
Sbjct: 120 ---VSGDDEVLPDALAGLAASAALAVSDIPFNGPISEVRVAKIDGKLKINPTPTELEKAS 176

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
               F++  S   + +    E     ++     +  A + I    + Q +
Sbjct: 177 --LEFIVAGSLDFILMV-EGEADEIQEEEMLEAMQFAHEEIKRHCQAQIE 223


>gi|149375751|ref|ZP_01893519.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Marinobacter algicola DG893]
 gi|149359876|gb|EDM48332.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Marinobacter algicola DG893]
          Length = 714

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 88/246 (35%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  + T TL     M I +   G    
Sbjct: 325 RIDGRDNKTVRPIEVEVGVLPSTHGSALFTRGETQAIVTTTLGTARDMQIIDALEGERKD 384

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      R+  R + +V+         I    +
Sbjct: 385 PFLFHYNFPPYSVGEAGRVGTPGRREVGHG----RLAKRGVAAVMPTMEEFPYTIRAVSE 440

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G+ +AL D                 +K  VA I+ G++        
Sbjct: 441 ITESNGSSSMASVCGSSLALMDAGV-------------PIKAPVAGIAMGLVKEGDQFAV 487

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    + +     L+ A      ++  
Sbjct: 488 LTDILGDEDHLGDMDFKVAGTSDG-ITALQMDIKIQGITDEIMEIALDQANAARLHILGE 546

Query: 234 QKDVIS 239
              VIS
Sbjct: 547 MAKVIS 552



 Score = 58.6 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 72/229 (31%), Gaps = 28/229 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           +++    +++ A GS LV   D  +L T       +   P +     +   T   G +P 
Sbjct: 24  VTIETGRIARQATGSVLVTVDDISVLGTVVAAKEAKPGQPFFPLTVNYFEKTYAVGKIP- 82

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +     R+I R +R +     +   Q+I             T 
Sbjct: 83  --GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPKGFMNETQVI-------------TT 124

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187
            ++ +     D    +   +          G + A            ++  + E  T  +
Sbjct: 125 VMSSSKNQDPDIAAMLAASAALSISGIPFDGPIGASRVAYTNERGYFLNPTFEELETSLL 184

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D     T+   ++     +E    ++D     +      +   +   K+
Sbjct: 185 DMVVAGTEDAVLMV---ESEAKGLTEDQMLGAVLFGHQEMQTAVTAIKE 230


>gi|148244575|ref|YP_001219269.1| polynucleotide phosphorylase/polyadenylase [Candidatus
           Vesicomyosocius okutanii HA]
 gi|187611332|sp|A5CWW8|PNP_VESOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146326402|dbj|BAF61545.1| polyribonucleotide nucleotidyltransferase [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 695

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 91/247 (36%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------K 55
           R+ GR    +RE+ +   + K   GS L   G+T  L   TL  K    +         +
Sbjct: 315 RIDGRNNETVRELKIETGILKNTHGSALFTRGETQALVVTTLGPKSDAQLIEKLESPERQ 374

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           + +    Y   P   G   +   +  R+ G       +  R + + +         + + 
Sbjct: 375 NNYFLLHYNFPPYCVGETGRLATIKRREIGHGH----LARRGITACLPSIEEFPYTVRVV 430

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            ++ +++G +  A++ G+ ++L D                 +K  +A I+ G++      
Sbjct: 431 SEITESNGSSSMASVCGSSLSLMDAGV-------------PIKAPIAGIAMGLVKENDRF 477

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G +  +Q   +  + + +     L  AK+   +++
Sbjct: 478 TVLTDILGDEDHLGDMDFKVAGTSRG-VNALQMDIKIQSITHEIMEIALKQAKEARLNIL 536

Query: 232 KLQKDVI 238
                VI
Sbjct: 537 GQMNQVI 543



 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 74/217 (34%), Gaps = 27/217 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ L    DT +L T             +  +  +   T   G +P 
Sbjct: 15  VTLETGRIARQAHGAVLASMDDTQVLVTVVSSKETRPGQDFFPLSVDYIEKTYSTGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+ +KREA   R   +     R+I R +R +     +   Q++I      ++      
Sbjct: 74  --GSFLKREA---RPSEKETLTSRLIDRTIRPLFPNGFMNEIQVLITVVSANSEVNPDII 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                       +     G   G  I++  Y E +  D+D
Sbjct: 129 SMLGVSAALS-------------ISGVPFSRPIGGSRVGYSNGEYILNPTYIELTNSDLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                TD   ++     +E    S++     +  A +
Sbjct: 176 MVVAGTDEAVLMV---ESEANELSEEIMLGAVVYAHE 209


>gi|258624688|ref|ZP_05719622.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM603]
 gi|258582975|gb|EEW07790.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM603]
          Length = 709

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   K  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSVDEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G+ +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     LN AK     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537

Query: 234 QKDVIS 239
               IS
Sbjct: 538 MDQAIS 543



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 35/234 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + +    DT +  +   +++    +       +T  Y     + G 
Sbjct: 17  VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR         R+I R +R +         Q+I     +  D      
Sbjct: 74  IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++    E     +D
Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                TD+  ++     +E    +++   A +    D        Q+  + N +
Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHD--------QQQAVINAI 220


>gi|207742728|ref|YP_002259120.1| n terminus of a polyribonucleotide nucleotidyltransferase protein
           [Ralstonia solanacearum IPO1609]
 gi|206594122|emb|CAQ61049.1| probable n terminus of a polyribonucleotide nucleotidyltransferase
           protein [Ralstonia solanacearum IPO1609]
          Length = 481

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 8/167 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L  ATL    +E++   ++     
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL  V+      +  I +  +
Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPKDDEFAYTIRLVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
           + +++G +  A++ G  +AL D    ++       +  +L+G+  A+
Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAV 477



 Score = 75.5 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 78/233 (33%), Gaps = 31/233 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ +    +++ A G+ L+   DT +L T       +     +     +   T   G +P
Sbjct: 15  KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLTVDYIEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR         R+I R LR +         Q+++   V+        
Sbjct: 75  ---GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVV--HVL-------- 118

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            +I     A  D    +   +          G V A   G   G  +++ +  + +  D+
Sbjct: 119 -SINPEVPA--DIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
           D     T+   ++     +E    S++     +    +     I  +  L ++
Sbjct: 176 DLVVAGTERAVLMV---ESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVRE 225


>gi|331269622|ref|YP_004396114.1| polyribonucleotide nucleotidyltransferase [Clostridium botulinum
           BKT015925]
 gi|329126172|gb|AEB76117.1| Polyribonucleotide nucleotidyltransferase [Clostridium botulinum
           BKT015925]
          Length = 706

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 88/236 (37%), Gaps = 16/236 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R  GR  +++R +S    +     GS L   G T +++ ATL    E +V   I      
Sbjct: 312 RPDGRNFDEIRPLSAETSLLPRTHGSGLFTRGLTQVMSVATLGSVSEGQVLDGIDEETSK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G        + R+ G       +  +A+  ++         I +  +
Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPNRREIGHG----ALAEKAIEPLIPSEQEFPYAIRVVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A++ G+ +AL D    ++  +    +  V    ++           + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLVTSEDLS-------KEEILTDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
              ED   D+D     T+ G I  +Q   +    S D     ++ A+     ++K+
Sbjct: 481 QGLEDFFGDMDFKVAGTEEG-ITAIQVDTKIEGLSNDCIKKAISDARTARLTILKV 535



 Score = 68.6 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 77/234 (32%), Gaps = 27/234 (11%)

Query: 12  REISLTRRVSKYAEGSCL-VKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R++              L + +GDT +L         +E +  +  + ++       G +
Sbjct: 12  RKLKGEFGKLGMLSDCALNISYGDTVVLINVNASPAPKEGIDFFPLSIEYQERLYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   R+    R I R LR +         Q++     +  D    
Sbjct: 72  P---GGFIKRE---GRPSDRAILNARAIDRPLRPLFPKGYRNDVQVVCTVVSVDQDNLPN 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA +AL                S      V  +S G++ G  I +    +     
Sbjct: 126 ILAMNGASLALC-------------LSSIPFTKPVGTVSVGLIDGKFIANPTSKQREESI 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +D     T    ++ ++   E     +D  +  +    +    +   Q+ V+  
Sbjct: 173 LDLTVCATKE-RVMMIEAGGEEIP--EDVMYDAIMFGFEECKKIADFQEKVMEQ 223


>gi|326436033|gb|EGD81603.1| hypothetical protein PTSG_02318 [Salpingoeca sp. ATCC 50818]
          Length = 221

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 53/147 (36%), Gaps = 6/147 (4%)

Query: 3   LSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE 62
             G +  Q R +     V   A+GS   + G+T ++                +   +  +
Sbjct: 31  ADGAKA-QPRSVFAEVGVVSQAKGSAFFEIGNTKVVAACYGPLSTSRRQGFQETCILDCD 89

Query: 63  YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
               P S     +      +Q    +E+ +++  +L+  V +S      I +   V+Q D
Sbjct: 90  VKFSPFSGVKHQQ-----TKQTALERELSQLLESSLKPCVCVSKYPKSVIQVYATVLQDD 144

Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSN 149
           G   +A I  A +AL +    M D   
Sbjct: 145 GAAFSAVINAASMALANAGIEMFDLLA 171


>gi|262163939|ref|ZP_06031678.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM223]
 gi|262172277|ref|ZP_06039955.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus MB-451]
 gi|261893353|gb|EEY39339.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus MB-451]
 gi|262027467|gb|EEY46133.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM223]
          Length = 709

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   K  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSVDEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G+ +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     LN AK     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537

Query: 234 QKDVIS 239
               IS
Sbjct: 538 MDQAIS 543



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 35/234 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + +    DT +  +   +++    +       +T  Y     + G 
Sbjct: 17  VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR         R+I R +R +         Q+I     +  D      
Sbjct: 74  IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++    E     +D
Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                TD+  ++     +E    +++   A +    D        Q+  + N +
Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHD--------QQQAVINAI 220


>gi|182417579|ref|ZP_02948904.1| polyribonucleotide nucleotidyltransferase [Clostridium butyricum
           5521]
 gi|237668128|ref|ZP_04528112.1| polyribonucleotide nucleotidyltransferase [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182378592|gb|EDT76120.1| polyribonucleotide nucleotidyltransferase [Clostridium butyricum
           5521]
 gi|237656476|gb|EEP54032.1| polyribonucleotide nucleotidyltransferase [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 701

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 86/239 (35%), Gaps = 16/239 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R  GR  +++R +     +     G+ L   G T ++T ATL    E ++   I  T+  
Sbjct: 312 RPDGRAFDEVRPLGCEVGILPRTHGTGLFTRGLTQVMTVATLGSISEIQILDGIDETQSK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  RAL  ++         I +  +
Sbjct: 372 RYMHHYNFPGYSVGEVKPLRGPGRREIGHG----ALAERALEPLIPSEEEFPYTIRLVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A++ G+ +AL D    ++  +    +  +    ++           I D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLS-------QEQVITDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              ED   D+D     T  G I  +Q   +   FS +     +  A+     +I    +
Sbjct: 481 QGIEDFFGDMDFKVAGTTEG-ITSIQVDTKLQGFSFNVVENAIRDARKARLKIIDKINE 538



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 81/238 (34%), Gaps = 35/238 (14%)

Query: 12  REISLT---RRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYG 64
           RE+ +      +   A       +GDT ++T         E +  +  + ++       G
Sbjct: 12  RELKVEFGKVGMLSNAA--TFTSYGDTVIMTNVNASEEPREGIDFFPLSVEYEERLYAVG 69

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G  +KRE   GR   ++    R + R +R +         Q++     ++ D  
Sbjct: 70  KIP---GGFIKRE---GRPSEKAILNGRAVDRTIRPLFPKGYRNDVQVVTTVVSVEKDNI 123

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD--YGED 182
               AI  A +AL                S      VAA+  G++ G  + + D    E+
Sbjct: 124 PEILAINAASLALC-------------LSSIPYTIPVAAVQVGLIDGKLVTNPDSKGREE 170

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           S +        T    ++ ++         +D     +    D    +I  Q++ ++ 
Sbjct: 171 SILH--LTVCATKE-RVMMIEAGGNEIP--EDKMIEAIEYGFDECQKIISFQEEAMAK 223


>gi|258620317|ref|ZP_05715355.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM573]
 gi|258587196|gb|EEW11907.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM573]
          Length = 709

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   K  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----RLAKRGIAAVMPSVDEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G+ +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PIKASVAGIAMGLVKEENDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++     LN AK     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIEGITKEIMQIALNQAKGARLHILSV 537

Query: 234 QKDVIS 239
               IS
Sbjct: 538 MDQAIS 543



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 35/234 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + +    DT +  +   +++    +       +T  Y     + G 
Sbjct: 17  VTLETGVMARQATAAVMATMDDTAVFVSVVGKKEA---VVGQDFFPLTVNYQERTYAAGK 73

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR         R+I R +R +         Q+I     +  D      
Sbjct: 74  IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVSVNPDVQPDII 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++    E     +D
Sbjct: 131 SMIGTSAALA-------------ISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                TD+  ++     +E    +++   A +    D        Q+  + N +
Sbjct: 178 LVVAGTDNAVLMV---ESEAQILTEEEMLAAVVFGHD--------QQQAVINAI 220


>gi|195449886|ref|XP_002072269.1| GK22421 [Drosophila willistoni]
 gi|194168354|gb|EDW83255.1| GK22421 [Drosophila willistoni]
          Length = 769

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 85/249 (34%), Gaps = 17/249 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------- 54
           R  GR  + +R IS    + K   GS L + G T +  T +L+        ++       
Sbjct: 353 RCDGRDFDSLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSPESAMKLDSLAALESG 412

Query: 55  --KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
             K       Y   P +TG   +     G  G R      +  RAL   +         +
Sbjct: 413 GLKSKNFMLHYEFPPYATGEVGR----IGPLGRRELGHGALAERALMPTLPSD--YPFTV 466

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            +  +V++++G +  A++ G  +AL D    +   +    +  V +      +  +    
Sbjct: 467 RLTSEVLESNGSSSMASVCGGSLALLDAGVPVSAPAAGVAIGLVTRYENND-TKHLQDYR 525

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G    +Q   +            L  A D  + ++ 
Sbjct: 526 ILTDILGIEDYLGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSKILD 584

Query: 233 LQKDVISNE 241
           +  + I   
Sbjct: 585 IMSEAIREP 593



 Score = 85.9 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 86/234 (36%), Gaps = 32/234 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R ++++     ++A G+ + + GDT ++ TA  + K            +  +Y +   ++
Sbjct: 48  RNMTISSGKLARFANGTAVCQMGDTAVMVTAVAKAKPTP---GQNFMPLVVDYRLKNAAS 104

Query: 71  GNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
           G R+    +    G   +EI   R+I R+LR +         Q++ +   + A       
Sbjct: 105 G-RIPMNFMRRELGPSEKEILSARLIDRSLRPLFAKEYRNETQLVCNMLSMDAVHSPDVL 163

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           AI  A +AL                     G + A+  G+  G  +++    E  +  +D
Sbjct: 164 AINAASMALS-------------LSDIPWNGPIGAVRVGLCEGEVLINPTRRELQSSQLD 210

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-------IADLIKLQK 235
                T    +V ++G  +           +L   K         I ++ +LQK
Sbjct: 211 LVVSATKQNLVVMLEGKGQVVL-----LQDLLKAIKQGTREAQFIIQEIERLQK 259


>gi|82545596|ref|YP_409543.1| polynucleotide phosphorylase/polyadenylase [Shigella boydii Sb227]
 gi|81247007|gb|ABB67715.1| polynucleotide phosphorylase [Shigella boydii Sb227]
          Length = 734

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 101/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R++ +V+ D+       + +  
Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRSVLAVMPDMDKFP-YTVRVVS 452

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 499

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 559 VMEQAIN 565



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 39  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 96  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 200 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 249


>gi|317477841|ref|ZP_07937027.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 4_1_36]
 gi|316905977|gb|EFV27745.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 4_1_36]
          Length = 714

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 90/250 (36%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR+  ++R I           GS +   G+T  L+T TL  K+   I +        
Sbjct: 319 RLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +  +      + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAN--YPYVVRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNAGEDKY 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     L  AK+    ++
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILEKALLQAKEGREYIL 538

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 539 GKITECIAEP 548



 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 28/242 (11%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       I+L      K A+GS +++ G+T LL T    ++ VP            
Sbjct: 12  PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            ++    R  G   KRE   GR         R++ RALR +   +      + ++  +  
Sbjct: 66  EKFSAFGRFPGGFTKRE---GRASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIILFS 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           V + D L  +   +          G ++ +    + G  +++  + 
Sbjct: 121 ADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGQFVINPTFE 169

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +    D+D     T   +I+ V+G  E    S+      +  A + I    K Q + ++ 
Sbjct: 170 QLEQADMDLMVGATYE-NIMMVEG--EMDEVSEQDLLEAMKAAHEAIKIQCKAQME-LAE 225

Query: 241 EV 242
           EV
Sbjct: 226 EV 227


>gi|222084321|ref|YP_002542850.1| polyribonucleotide nucleotidyltransferase protein [Agrobacterium
           radiobacter K84]
 gi|254782699|sp|B9JGS9|PNP_AGRRK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|221721769|gb|ACM24925.1| polyribonucleotide nucleotidyltransferase protein [Agrobacterium
           radiobacter K84]
          Length = 710

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 87/243 (35%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR  + +R I     V     GS L   G+T  +  ATL         ++  G    
Sbjct: 316 RIDGRDLSTVRAIVSEVGVLPRTHGSSLFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++  +      + +  +
Sbjct: 376 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAVRPMLPTAEQFPYTLRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  + +    A+         + D+
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     TD G I  +Q   +    +++     LN AK     ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTD-GGITALQMDIKIEGITEEIMNVALNQAKGGRLHILGEMAKA 541

Query: 238 ISN 240
           IS 
Sbjct: 542 ISE 544



 Score = 85.5 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 75/229 (32%), Gaps = 31/229 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ +  +G+T +L T     + +     +     +   T   G +
Sbjct: 14  RPLKLETGKIARQADGAVMATYGETVVLATVVSAKSPKPGQDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR   +   + R+I R +R +         Q+++   VIQ D    
Sbjct: 74  P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVT--VIQHDLEND 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++     AL                     G +     G + G  +++    E   
Sbjct: 126 PDILSMVATSAAL-------------TLSGVPFMGPIGGARVGYINGEYVLNPHLDEMDE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
             +D     T    ++     +E    S+D     +         +I  
Sbjct: 173 SSLDLVVAGTQEAVLMV---ESEAKELSEDVMLGAVMFGHRGFQPVIDA 218


>gi|329960360|ref|ZP_08298785.1| polyribonucleotide nucleotidyltransferase [Bacteroides fluxus YIT
           12057]
 gi|328532798|gb|EGF59580.1| polyribonucleotide nucleotidyltransferase [Bacteroides fluxus YIT
           12057]
          Length = 714

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR+  ++R I           GS +   G+T  L+T TL  K+   I +        
Sbjct: 319 RLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +         + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNAGEDKY 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     L  AK+    ++
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILEKALLQAKEGREYIL 538

Query: 232 KLQKDVISNE 241
               + ++  
Sbjct: 539 GKITECLAEP 548



 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 28/242 (11%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       I+L      K A+GS +++ G+T LL T    ++ VP            
Sbjct: 12  PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            ++    R  G   KRE   GR         R++ RALR +   +      + ++  +  
Sbjct: 66  EKFSAFGRFPGGFTKRE---GRASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIILFS 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           V + D L  +   +          G ++ +    + G  +++  + 
Sbjct: 121 ADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPTFE 169

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +    D+D     T   +I+ V+G  E    S+      +  A + I    K Q + ++ 
Sbjct: 170 QLEKADMDLMVGATYE-NIMMVEG--EMDEVSERDLLEAMKAAHEAIKIQCKAQME-LAE 225

Query: 241 EV 242
           EV
Sbjct: 226 EV 227


>gi|83950704|ref|ZP_00959437.1| polyribonucleotide nucleotidyltransferase [Roseovarius nubinhibens
           ISM]
 gi|83838603|gb|EAP77899.1| polyribonucleotide nucleotidyltransferase [Roseovarius nubinhibens
           ISM]
          Length = 713

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 89/248 (35%), Gaps = 27/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I     +     GS L   G+T  L   TL           +  T   
Sbjct: 318 RIDGRDTTTVRPIVSETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGTFKS 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+         I +  +
Sbjct: 378 NFLLHYNFPPYSVGEAGR----VGPPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGY-- 172
           + +++G +  A++ G  +++ D                 LK  VA ++ G++    G   
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEDDGDFA 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T+ G I  +Q   + A  + +     L  AKD    ++ 
Sbjct: 481 ILTDILGDEDHLGDMDFKVAGTEKG-ITSLQMDIKVAGITPEIMKQALAQAKDGRLHILG 539

Query: 233 LQKDVISN 240
                ++ 
Sbjct: 540 EMSKALTE 547



 Score = 71.7 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 80/231 (34%), Gaps = 33/231 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+GS +   G+T ++   T     +     +     +       G +P 
Sbjct: 16  LTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQEKYYAAGKVP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++ C V+  D      
Sbjct: 75  --GGFFKREA---RPTEKETLTARLIDRPIRPLFVDGF--KNEVLVMCTVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----PIVDLDYGED 182
             A+  A  AL                     G +A    G   G     P VD  +   
Sbjct: 128 IVAMIAASAALTISGA-------------PFMGPIAGCRVGYEDGEYILNPTVDDMHELR 174

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           S  D   + V+  +   V +  S E    +++     +  A +++  ++ L
Sbjct: 175 SNPDQRLDLVVAGTRDAVMMVES-EAYELTEEEMLGAVTFAHEQLKPVVDL 224


>gi|319403623|emb|CBI77208.1| polyribonucleotide nucleotidyltransferase [Bartonella rochalimae
           ATCC BAA-1498]
          Length = 733

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 87/242 (35%), Gaps = 18/242 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR  + +R I     +     GS L   G+T  L  ATL         ++  G    
Sbjct: 317 RIDGRNLSDVRSIQSEVGILPRTHGSALFTRGETQALVIATLGTGEDEQYIDSLTGMYKE 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++         I    +
Sbjct: 377 TFLLHYNFPPFSVGEIGR----IGSPGRREIGHGKLAWRAIHPMLPTKESFPYTIRTVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    + +      +  + +G   A+         + D+
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLANPVAGIAMGLIKEGKQFAV---------LSDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   +    +++     L  AKD    ++      
Sbjct: 484 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMAKA 542

Query: 238 IS 239
           ++
Sbjct: 543 LA 544



 Score = 82.8 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 82/233 (35%), Gaps = 35/233 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ L  +G+T +L T     T +     +     +       G +
Sbjct: 14  RPLILETGKIARQADGAILATYGETVVLATVVSAKTPKPDQNFFPLTVNYQEKNYAVGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G  +KRE+   R       I R+I R +R +         Q+I+   VIQ D    
Sbjct: 74  P---GGYLKRES---RPSESETLISRLIDRPIRPLFVDGYKNDTQVIVS--VIQHDLENN 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               AI  +  AL                     G +AA   G   G  I++ +  E   
Sbjct: 126 PDILAIIASSAALTLSGI-------------PFMGPIAAARIGYCNGQYILNPNIDEMPE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKL 233
             +D     T++  ++     +E     +D     +   +      I  +IKL
Sbjct: 173 SKLDLVVAGTENAVLMV---ESEAHELPEDVMLDAVMFGQKSFQPVINAIIKL 222


>gi|149189790|ref|ZP_01868071.1| polynucleotide phosphorylase/polyadenylase [Vibrio shilonii AK1]
 gi|148836439|gb|EDL53395.1| polynucleotide phosphorylase/polyadenylase [Vibrio shilonii AK1]
          Length = 713

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 95/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  + TATL  +        +   +  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGTQRDAQIIDELTGERKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVEEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKSSVAGIAMGLVKEGDDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G I  +Q   +    +++     LN A+     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537

Query: 234 QKDVISN 240
             + IS 
Sbjct: 538 MDEAISG 544



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 76/228 (33%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +V   DT +  +   +    E    +     +   T   G +P 
Sbjct: 17  VTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +   +     Q+I     +  +      
Sbjct: 76  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMSVNPNVQPDMV 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + A   G + G  +++    E     +D
Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELENSKLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T+ G ++ V+  +E    +++   + +    D+   +IK   +
Sbjct: 178 LVVAGTE-GAVLMVE--SEADNLTEEEMLSAVVYGHDQQQVVIKAINE 222


>gi|253991498|ref|YP_003042854.1| polynucleotide phosphorylase/polyadenylase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638376|emb|CAR66998.1| polyribonucleotide nucleotidyltransferase (ec 2.7.7.8)
           (polynucleotid phosphorylase) (pnpase) (cap87k)
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782948|emb|CAQ86113.1| polyribonucleotide nucleotidyltransferase [Photorhabdus
           asymbiotica]
          Length = 708

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 100/246 (40%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +    I +   G  T 
Sbjct: 315 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 375 RFLLHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVLAVMPKANEFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G +  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-VSALQMDIKIEGITREIMQVALNQAKGARLHILSV 536

Query: 234 QKDVIS 239
            +  I+
Sbjct: 537 MEQAIN 542



 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 72/212 (33%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           I++   +  + A  + +V   DT +  T   ++KV           +T  Y     + G 
Sbjct: 16  IAIETGMMARQATAAVMVNMDDTAVFVTVVGQKKV---KAGQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR G     + R+I R LR +     L   QI+     +         
Sbjct: 73  VPGSFFRRE---GRPGEGETLVARLIDRPLRPLFPEGFLNEVQIVATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALALSGI-------------PFNGPIGAARVGYINDQYVLNPTSDELKNSRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +G ++ V+  +E    +++     +
Sbjct: 177 LVVSGT-AGAVLMVE--SEADLLTEEQMLGAV 205


>gi|160887886|ref|ZP_02068889.1| hypothetical protein BACUNI_00289 [Bacteroides uniformis ATCC 8492]
 gi|156862572|gb|EDO56003.1| hypothetical protein BACUNI_00289 [Bacteroides uniformis ATCC 8492]
          Length = 714

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 90/250 (36%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR+  ++R I           GS +   G+T  L+T TL  K+   I +        
Sbjct: 319 RLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +  +      + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAN--YPYVVRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNAGEDKY 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     L  AK+    ++
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKVDGLSYEILEKALLQAKEGREYIL 538

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 539 GKITECIAEP 548



 Score = 88.6 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 28/242 (11%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       I+L      K A+GS +++ G+T LL T    ++ VP            
Sbjct: 12  PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            ++    R  G   KRE   GR         R++ RALR +   +      + ++  +  
Sbjct: 66  EKFSAFGRFPGGFTKRE---GRASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIILFS 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           V + D L  +   +          G ++ +    + G  +++  + 
Sbjct: 121 ADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARINGQFVINPTFE 169

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +    D+D     T   +I+ V+G  E    S+      +  A + I    K Q + ++ 
Sbjct: 170 QLEQADMDLMVGATYE-NIMMVEG--EMDEVSEQDLLEAMKAAHEAIKIQCKAQME-LAE 225

Query: 241 EV 242
           EV
Sbjct: 226 EV 227


>gi|157111536|ref|XP_001651608.1| polyribonucleotide nucleotidyltransferase [Aedes aegypti]
 gi|108883782|gb|EAT48007.1| polyribonucleotide nucleotidyltransferase [Aedes aegypti]
          Length = 777

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 88/247 (35%), Gaps = 16/247 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GRQ + +R+IS    + K   GS L + G T +  T  L+        + +      
Sbjct: 351 RCDGRQLDDLRKISCGVNLHKPLHGSALFQRGQTQVFATVALDSHESALKLDPITSLDMG 410

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +TG   K     G  G R      +  + L  ++         I 
Sbjct: 411 VKSKNFFLHYEFPPYATGETGK----IGPVGRREIGHGALAEKGLVPIIPHE--HPFTIR 464

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A +    +AL D    +++ +    +  V K      +  +     
Sbjct: 465 LTAEVLESNGSSSMATVCAGSMALMDAGIPVQEAAAGVAIGLVTKYENND-TKHLQDYRI 523

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + DL   ED   D+D     T  G +  +Q   +            L  A +    ++ +
Sbjct: 524 LTDLLGIEDYMGDMDMKVAGTRRG-MTAIQADIKVPGIPLKVVMESLQKAMEARFRILDI 582

Query: 234 QKDVISN 240
             + I++
Sbjct: 583 MDETIAS 589



 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 81/231 (35%), Gaps = 25/231 (10%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R I ++    +++A+G  +V  GDT ++ TA  + K P    N+    +  +Y     + 
Sbjct: 45  RVIRISSGKYARFADGCSVVSVGDTAVMVTAVAKPK-PSGGNNS-FLPLVVDYRQKAAAA 102

Query: 71  GNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
           G R+    +    G   +EI   R++ R++R +         Q++ +   I +       
Sbjct: 103 G-RIPTNFLRRELGPSEKEILAARLVDRSIRPMFPAEYRSDTQLVCNMLAIDSSN----- 156

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
                   L D        +          G + A+  G++    I++    E     +D
Sbjct: 157 --------LPDVQAINAASAALALSDIPWNGPIGAVRVGLVDNEIIINPTRKELQLSSLD 208

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI----KLQK 235
                     +V ++G       +++     +         +I    KLQK
Sbjct: 209 LVVTAAKQNLVVMLEG--RGNVVNENELRMAIKKGTKEAQLIINGIEKLQK 257


>gi|291544643|emb|CBL17752.1| polyribonucleotide nucleotidyltransferase [Ruminococcus sp. 18P13]
          Length = 706

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 84/248 (33%), Gaps = 29/248 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI- 59
           R+ GR  +++R ++    V     GS L   G T +LT AT         I         
Sbjct: 314 RVDGRGIDEIRPLAAEVGVLPRVHGSGLFTRGQTQVLTVATLGPVSDAQRIDGIDEDVSK 373

Query: 60  --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  RAL  V+         + +  +
Sbjct: 374 RYMHHYNFPSYSVGETKPSRGPGRREIGHG----ALAERALEPVIPPVEEFPYALRLVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           V+ ++G T   +I G+ +AL D                 +K  VA ISCG++        
Sbjct: 430 VLSSNGSTSQGSICGSTLALMDAGV-------------PIKAPVAGISCGLITKPDSDEF 476

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-IADL 230
             +VD+   ED   D+D     T  G I  +Q   +    +       L   +   I  L
Sbjct: 477 MTMVDIQGLEDFFGDMDFKVGGTHKG-ITAIQVDIKVDGLTPAIIEEALEKTRKARIYIL 535

Query: 231 IKLQKDVI 238
            ++    I
Sbjct: 536 DEIMLKAI 543



 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 33/235 (14%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           RE+++    + + A GSC V++G + ++   T      E +  +  +  +       G +
Sbjct: 15  RELTVETGKTCELANGSCWVRYGGSVVMANVTASAKPREGIDFFPLSVDYEERLYAVGKI 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+ +KRE   G+   ++    RM+ R +R +          +++    +  D    
Sbjct: 75  P---GSFMKRE---GKPSEKAILTSRMVDRPIRPLFPKDMRNDVSVVMTVLAVDPDHSPE 128

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              +    +A+                     G +A +S G++ G  +++    +    D
Sbjct: 129 IMGMIATSIAIS-------------ISDIPWNGPIAGVSVGLVDGEIVLNPTLEQRGRND 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA-----KDRIADLIKLQKD 236
           ++     TD   IV ++  A +    +      + LA     +  +A +  +QK 
Sbjct: 176 LNLTVAGTDK-KIVMIEAGANQ--VDEATMMQAI-LAGQAENEKMVAFIKDIQKQ 226


>gi|187734890|ref|YP_001877002.1| Polyribonucleotide nucleotidyltransferase [Akkermansia muciniphila
           ATCC BAA-835]
 gi|226702592|sp|B2UNA9|PNP_AKKM8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187424942|gb|ACD04221.1| Polyribonucleotide nucleotidyltransferase [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 714

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 89/231 (38%), Gaps = 31/231 (13%)

Query: 13  EISLTRRVSKY-AEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
            I++        A+G+ +V+ GDT +L T      ++E    +  + ++    A  GM P
Sbjct: 14  PITIETGKMARLADGAVVVRSGDTVVLVTVVSATKVKEGQTFFPLSVEYKEKAAAAGMFP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
              G   KRE   GR   +     RM  R LR +         Q+I    ++ ADG    
Sbjct: 74  ---GGYFKRE---GRPTEKEILTCRMTDRPLRPMFPKGYFYDTQVI--TLLLSADGENEP 125

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              +I GA  A                        V A+  G + G  +++    +    
Sbjct: 126 DILSINGASAACV-------------VSDLPFAEPVGAVRVGRIDGQFVINPTNSQREHS 172

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            +D  F  T    ++ ++GSA      ++ F A L +A++ +  + + Q++
Sbjct: 173 QLDLVFAGTKD-QVIMIEGSANE--LPEEDFIAALRVAQENVKVICEKQEE 220



 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 90/254 (35%), Gaps = 34/254 (13%)

Query: 2   RLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R  GR   Q+R ++    V      GS +   G+T  L  ATL         +   G + 
Sbjct: 314 RADGRALKQLRPLTAEVNVLPPVVHGSAMFARGETMSLCLATLAPMEERQYMDNYTGSVN 373

Query: 61  -----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P S G+  +    + R+ G       +  R++  VV         I + 
Sbjct: 374 EKRFILHYNFPPFSVGDTGRFGGQNRREIGHG----ALAERSIAPVVPGEQEFPYAIRVS 429

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            ++++++G T  A++    ++L                   LK  VA IS G++      
Sbjct: 430 SEIMESNGSTSMASVCAGTMSLLAAGV-------------PLKRPVAGISVGLVTEQNDQ 476

Query: 174 --------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                   ++D+   ED   D+D     T  G +   Q   +            +++AK 
Sbjct: 477 HEITSYKTLLDIIGSEDFYGDMDFKLCGTSEG-VTGYQLDLKLPGIPLSILEEAIHVAKA 535

Query: 226 RIADLIKLQKDVIS 239
              D++K+  + I+
Sbjct: 536 GRTDVLKVMNEAIA 549


>gi|39933509|ref|NP_945785.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
           palustris CGA009]
 gi|81564252|sp|Q6NCN8|PNP_RHOPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|39647355|emb|CAE25876.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
           palustris CGA009]
          Length = 722

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 90/241 (37%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I     V     GS L   G+T  +   TL         ++  G    
Sbjct: 316 RIDGRDSKTVRNILAQVGVLPRTHGSALFTRGETQAMVVTTLGTGEDEQYVDSLSGTYKE 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      ++  RA+  V+         I +  +
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHG----KLAWRAIHPVLPPHHEFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    ++  +    +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   + A  +++     L  AKD    ++      
Sbjct: 483 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSKA 541

Query: 238 I 238
           +
Sbjct: 542 L 542



 Score = 85.5 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 78/238 (32%), Gaps = 42/238 (17%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + L    V++ A+G+ +  +G+T +L T        E V        +       G +
Sbjct: 14  RPLKLETGKVARQADGAVVATYGETVVLATVVAAKAPREGVDFLPLTVDYQEKAYAAGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +   + R+I R +R +         Q+I+       +    
Sbjct: 74  P---GGYFKRE---GRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                    KG + A   G +    +++     D   +
Sbjct: 128 VLAMVAASAAL-------------TLSGVPFKGPIGAARVGFINDEYVLNP--VLDEMAE 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHF---------------FAMLNLAKDRIAD 229
                V+  +   V +  S E    S++                  A+++LA+    +
Sbjct: 173 TQLELVVAGTADAVLMVES-EAKELSEEIMLGAVMFGHRHFQPVIDAIIDLAEKAAKE 229


>gi|15963997|ref|NP_384350.1| polynucleotide phosphorylase/polyadenylase [Sinorhizobium meliloti
           1021]
 gi|307306409|ref|ZP_07586153.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti
           BL225C]
 gi|307319296|ref|ZP_07598725.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti
           AK83]
 gi|81635311|sp|Q92SW0|PNP_RHIME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|15073173|emb|CAC41681.1| Probable polyribonucleotide nucleotidyltransferase [Sinorhizobium
           meliloti 1021]
 gi|306895132|gb|EFN25889.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti
           AK83]
 gi|306902251|gb|EFN32848.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti
           BL225C]
          Length = 717

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 317 RIDGRDLVTVRPIVAEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++  +      + +  +
Sbjct: 377 NFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  + +    A+         + D+
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAV---------LSDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     TD+G I  +Q   +    +++     LN AK     ++      
Sbjct: 484 LGDEDHLGDMDFKVAGTDAG-ITSLQMDIKIEGITEEIMGVALNQAKGGRLHILGEMAKA 542

Query: 238 ISN 240
           IS 
Sbjct: 543 ISE 545



 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 73/229 (31%), Gaps = 31/229 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ L  +G+T +L T       +     +     +   T   G +
Sbjct: 14  RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR       + R+I R +R +         Q+II   V+Q D    
Sbjct: 74  P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFPDGYKNDTQVIIT--VMQHDLENN 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
                         D +  +   +          G V     G + G  +++    E   
Sbjct: 126 P-------------DVVAMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
             +D     T    ++     +E     +D     +   +     +I  
Sbjct: 173 STLDLVVAGTQEAVLMV---ESEAKELPEDVMLGAVVFGQKGFQPVIDA 218


>gi|114046602|ref|YP_737152.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. MR-7]
 gi|123131654|sp|Q0HXR0|PNP_SHESR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|113888044|gb|ABI42095.1| Polyribonucleotide nucleotidyltransferase [Shewanella sp. MR-7]
          Length = 699

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 93/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+ + +R +S+   V     GS L   G+T  L T TL  +        I   +  
Sbjct: 314 RIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      ++  R + +V+  +      + +  +
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPTAEEFPYSVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ G  +AL D                 +K  VA I+ G++     + +
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDNFVV 476

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A      ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-VTALQMDIKIEGITKEIMEIALQQAYGARVHILNV 535

Query: 234 QKDVISNE 241
               I + 
Sbjct: 536 MDQAIGSH 543



 Score = 71.7 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 66/208 (31%), Gaps = 27/208 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A+ + L   GDT +L T       E     +     +   T   G +P 
Sbjct: 15  VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+II    +         
Sbjct: 74  --GGFFKRE---GRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVDPQIEPDII 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++         +  
Sbjct: 129 SMIGTSAALAISGI-------------PFSGPLGAARVGYINGEYVLNPTVT--QLANSQ 173

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHF 216
            N V+  +   V +  S E     ++  
Sbjct: 174 LNLVVAGTEGAVLMVES-EAQALPEEVM 200


>gi|194246773|ref|YP_002004412.1| polynucleotide phosphorylase/polyadenylase [Candidatus Phytoplasma
           mali]
 gi|257096701|sp|B3QZG1|PNP_PHYMT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|193807130|emb|CAP18568.1| Polyribonucleotide nucleotidyltransferase [Candidatus Phytoplasma
           mali]
          Length = 728

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 92/241 (38%), Gaps = 17/241 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR  +++R I+    +     GS L   G T  L   TL    E K+   + +   
Sbjct: 337 IRPDGRNSSEIRSITSRIDILPRTHGSALFTRGGTQSLAIVTLGTLRESKIIDDLSDEVD 396

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     + G+  +  A S R+ G       +  +AL  V+         I +  
Sbjct: 397 KRFMLHYNFPAFAVGSVGRYLAPSRREIGHGM----LAEKALECVLPSENDFPYSIRVVS 452

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175
           +++ ++G +  A I  + +AL      ++       +  ++           +  Y I+ 
Sbjct: 453 EILDSNGSSSQATICASSMALMSAGVPLKSLVAGVAMGLIVDD------IDKINHYTILS 506

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD-RIADLIKLQ 234
           D++  ED   D+D     T  G I  +Q   +    + + F  +L  AK  RI  L +++
Sbjct: 507 DIEGLEDYQGDIDFKIAGTKVG-ITALQLDIKIKGITLEIFEKVLEQAKKDRIKILNEME 565

Query: 235 K 235
           K
Sbjct: 566 K 566



 Score = 52.0 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 82/237 (34%), Gaps = 35/237 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-------GM 65
           + +    +S+ A GS ++ + DT +L+ A   +K      +     +T  Y       G 
Sbjct: 22  LRIEIGEISRQANGSVMLFYKDTVILSVAVCGDK----KNSLNFLPLTVNYQEKLYAAGK 77

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G  ++RE   G+   +     R+I R +R +   +     Q+I        DG  
Sbjct: 78  IP---GGFLRRE---GKPSDQEILCSRLIDRTIRPLFSKNFKNEVQLINMVLSSDPDGNN 131

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
                          +  +                V+++  G +    I++    +    
Sbjct: 132 EN-------------IALLGSSLALLISDIPFFEPVSSVCVGKIGDNLIINPTLSQRENS 178

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                   T    +  V+ S++    S+++F   +    + I  L   Q + I+N++
Sbjct: 179 SFFLILAGTKD-SLNMVEMSSKE--ISENNFLESIKFGHEIIKKLCLFQTE-IANQI 231


>gi|269961984|ref|ZP_06176339.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi 1DA3]
 gi|269833307|gb|EEZ87411.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi 1DA3]
          Length = 660

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 95/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGERKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKSSVAGIAMGLVKEGDDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G I  +Q   +    +++     LN A+     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537

Query: 234 QKDVISN 240
             + IS 
Sbjct: 538 MDEAISG 544



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 73/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +V   DT +  +   +    E    +     +   T   G +P 
Sbjct: 17  VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +   +     Q+I     +  D      
Sbjct: 76  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIV 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + A   G + G  +++    E     +D
Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELEASKLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T+S  ++     +E    +++   + +    D+   +I    +
Sbjct: 178 LVVAGTESAVLMV---ESEADNLTEEEMLSAVVYGHDQQQTVINAINE 222


>gi|312885115|ref|ZP_07744800.1| polynucleotide phosphorylase/polyadenylase [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309367215|gb|EFP94782.1| polynucleotide phosphorylase/polyadenylase [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 708

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 96/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   K  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R +++++         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIQAIMPSVDEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKSSVAGIAMGLVKEGDDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G I  +Q   +    +++     LN A+     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537

Query: 234 QKDVISN 240
             + IS 
Sbjct: 538 MDEAISG 544



 Score = 66.3 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 76/234 (32%), Gaps = 35/234 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +V   DT +  +   +    E    +     +   T   G +P 
Sbjct: 17  VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +   +     Q+I     +  D      
Sbjct: 76  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIP 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + A   G + G  +++    E  +  +D
Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELESSKLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                TDS  ++     +E    +++   + +    D        Q+ V+ N +
Sbjct: 178 LVVAGTDSAVLMV---ESEADNLTEEEMLSAVVFGHD--------QQQVVINAI 220


>gi|300721542|ref|YP_003710817.1| polynucleotide phosphorylase [Xenorhabdus nematophila ATCC 19061]
 gi|297628034|emb|CBJ88583.1| polynucleotide phosphorylase, has polyadenylase activity
           [Xenorhabdus nematophila ATCC 19061]
          Length = 712

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 99/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L  ATL  +    V   +   +  
Sbjct: 319 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVAATLGTERDAQVIDELMGERTD 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+  ++     + +  +
Sbjct: 379 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPNASEFPYTVRVVSE 434

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 435 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 481

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 482 LSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITREIMQIALNQAKGARLHILSV 540

Query: 234 QKDVISNE 241
            +  I + 
Sbjct: 541 MEQAIESP 548



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 70/212 (33%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           +++   +  + A  + +V   DT +  T   ++K+           +T  Y     + G 
Sbjct: 16  VTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKMKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR G     + R+I R LR +     L   QII     +         
Sbjct: 73  IPGSFFRRE---GRPGEGETLVARLIDRPLRPLFPEGFLNEVQIIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALALSGI-------------PFNGPIGAARVGYINDQYVLNPTSDELKNSRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T+S  ++     +E    ++D     +
Sbjct: 177 LVVAGTESAVLMV---ESEAELLTEDQMLGAV 205


>gi|265754741|ref|ZP_06089793.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp.
           3_1_33FAA]
 gi|263234855|gb|EEZ20423.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp.
           3_1_33FAA]
          Length = 728

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57
           RL GR+  ++R I           GS +   G+T  LT+ TL  K+   I     +    
Sbjct: 336 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIVDDVLDQHRE 395

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +         + +  D
Sbjct: 396 RFLLHYNFPPYSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAG--YPYTVRVVSD 449

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D    M             K  V+ I+ G++        
Sbjct: 450 IMESNGSSSMATVCAGTLALMDAGVAM-------------KKPVSGIAMGLIKNAGEEKY 496

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     L  AK+    ++
Sbjct: 497 AVLSDILGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSFEILEKALLQAKEGREHIL 555

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 556 NKLTECIAEP 565



 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 88/240 (36%), Gaps = 27/240 (11%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       I+L      K A+GS +++ G+T LL T    ++ VP            
Sbjct: 29  PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 82

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y    R  G   KRE   G+         R++ RALR +   +      + ++  +  
Sbjct: 83  EKYSAFGRFPGGFTKRE---GKASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIVLFS 137

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           + + D L  +   +          G ++ +    + G  +++  + 
Sbjct: 138 ADG-----------IDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFE 186

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +    D+D     T   +I+ V+G  E    S+    A +  A + I    K Q +++  
Sbjct: 187 QLGKADMDLMVAATYD-NIMMVEG--EMQEVSEQDLLAAMKAAHEAIKVHCKAQMELMEE 243


>gi|152979713|ref|YP_001345342.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
           succinogenes 130Z]
 gi|187470960|sp|A6VR10|PNP_ACTSZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|150841436|gb|ABR75407.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
           succinogenes 130Z]
          Length = 707

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 93/246 (37%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L   TL  +        +   +  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVVTLGTERDAQILDELTGERQD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      R+  R + +V+   +     + +  +
Sbjct: 374 TFLFHYNFPPYSVGETGRVGSPKRREIGHG----RLAKRGVAAVMPSISEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PVKSAVAGIAMGLVKEEDKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRTG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535

Query: 234 QKDVIS 239
            +  I+
Sbjct: 536 MEQAIA 541



 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 77/232 (33%), Gaps = 27/232 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  +      ++E    +     +   +   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVSVVAKKEVKEGQDFFPLTVDYQERSYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +     L   QII     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAALA-------------LSGVPFNGPIGAARVGFINDQFVLNPTMAEQKQSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                TD   ++     +E    +++   A +     +   +I+  K+++  
Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVIEAIKELVKE 224


>gi|297620923|ref|YP_003709060.1| polyribonucleotide nucleotidyltransferase [Waddlia chondrophila WSU
           86-1044]
 gi|297376224|gb|ADI38054.1| polyribonucleotide nucleotidyltransferase [Waddlia chondrophila WSU
           86-1044]
          Length = 698

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 88/244 (36%), Gaps = 26/244 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMW--IRNTKHG 57
           R  GR  NQ+R I + + +     G  L   G+T    + T         +  +      
Sbjct: 317 RSDGRATNQVRPIWIEQGLLPRTHGCSLFTRGETQTVAICTLGGNNMAQRYEDLNGEGSR 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
               +Y   P S G   +     G  G R     ++  RAL S++         I ++ +
Sbjct: 377 SFYLQYFFPPFSVGEVGR----VGPPGRREVGHGKLAERALASILPSKEEFPYTIRLESN 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G  +A+ D                 +   V+ I+ G++        
Sbjct: 433 ITESNGSSSMASVCGGCLAMMDAGV-------------PITRPVSGIAMGLILEENHYTI 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED+  D+D   V  D   I   Q   +    + D   A L  AK+    +++ 
Sbjct: 480 LSDILGIEDALGDMDFK-VTGDKNGITAFQMDIKVEGITIDIMRAALAQAKEGRIHILEK 538

Query: 234 QKDV 237
             + 
Sbjct: 539 MFEA 542



 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 80/226 (35%), Gaps = 27/226 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKHGWITAEYGMLP 67
           EI+     +++ A G+ +VK G+T L      TA   E V        +    A  G   
Sbjct: 14  EITFETGQIARQANGAVVVKSGETMLFCSACATAEPLENVDFLPLRVDYQEKFASAGK-- 71

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
            + G  +KRE   GR   R   + R+I R +R + +       Q++        DG    
Sbjct: 72  -TLGGFIKRE---GRPTERETLVCRLIDRPIRPLFEEGYYQDTQLLSYVW--SYDG---- 121

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                  V   D L      +        LK  V A+  GM+ G  I++          +
Sbjct: 122 -------VNSPDALAICAASAALTISDIPLKKAVGAVRVGMIDGQFILNPTVEHQEKSVL 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           D     T+   ++ ++G       +++     +++    I  + + 
Sbjct: 175 DLMIAGTEDA-VLMIEG--YCKFLTEEQVIEAISIGHQGIQTICRA 217


>gi|254418578|ref|ZP_05032302.1| 3' exoribonuclease family, domain 2 [Brevundimonas sp. BAL3]
 gi|196184755|gb|EDX79731.1| 3' exoribonuclease family, domain 2 [Brevundimonas sp. BAL3]
          Length = 745

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 17/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  +++R I     V     GS L   G+T  L  ATL           ++ T   
Sbjct: 317 RVDGRALDKVRAIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQYIDSLQGTYKE 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++         I +  +
Sbjct: 377 SFLLHYNFPPYSVGEAGR----MGSPGRREIGHGKLAWRAIRPMLPSKEDFPYTIRLVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G+ +AL D    +    +   +  +L+               + D+
Sbjct: 433 ITESNGSSSMATVCGSSLALMDAGVPLIRPVSGIAMGLILEPSGEFA--------ILSDI 484

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   + A  +++     L  A      ++      
Sbjct: 485 LGDEDHLGDMDFKVAGTSEG-ITSLQMDIKVAGITKEIMKQALTQASAGRLHILDEMSKA 543

Query: 238 I 238
           +
Sbjct: 544 M 544



 Score = 98.2 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 81/229 (35%), Gaps = 31/229 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R ++L    +++ A+G+ L  +G+T +L T     + +  +  +     +   T   G +
Sbjct: 14  RPLTLETGRIARQADGAVLATYGETVVLATVVYGRSPKPGLDFFPLTVNYQEKTFAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR   +   + R+I R +R +         Q++I   V+Q D    
Sbjct: 74  P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFVKGFKNETQVVIT--VLQHDMEND 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
                +  A  AL                     G + A   G++ G  +++    +   
Sbjct: 126 PDVLGMVAASAAL-------------TISGVPFMGPIGAARVGLIDGELVLNPTVDQIPG 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
            D+D     T       +   +E    S++     L  A   +  +I  
Sbjct: 173 SDLDLVVAGTQD---ALMMVESEAKELSEEKMLEALMFAHAGMQPVIDA 218


>gi|117919484|ref|YP_868676.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. ANA-3]
 gi|187611298|sp|A0KU01|PNP_SHESA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|117611816|gb|ABK47270.1| 3' exoribonuclease [Shewanella sp. ANA-3]
          Length = 699

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 93/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+ + +R +S+   V     GS L   G+T  L T TL  +        I   +  
Sbjct: 314 RIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      ++  R + +V+  +      + +  +
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPTAEEFPYSVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ G  +AL D                 +K  VA I+ G++     + +
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDNFVV 476

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A      ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-VTALQMDIKIEGITKEIMEIALQQAYGARVHILNV 535

Query: 234 QKDVISNE 241
               I + 
Sbjct: 536 MDQAIGSH 543



 Score = 71.7 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 67/206 (32%), Gaps = 27/206 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A+ + L   GDT +L T       E     +     +   T   G +P 
Sbjct: 15  VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+II    +         
Sbjct: 74  --GGFFKRE---GRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVDPQIEPDII 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++    +  +  ++
Sbjct: 129 SMIGTSAALAISGI-------------PFSGPLGAARVGYINGEYVLNPTVTQLESSQLN 175

Query: 189 ANFVMTDSGHIV---EVQGSAERATF 211
                T+S  ++   E Q   E    
Sbjct: 176 LVVAGTESAVLMVESEAQALPEEVML 201


>gi|261856059|ref|YP_003263342.1| polyribonucleotide nucleotidyltransferase [Halothiobacillus
           neapolitanus c2]
 gi|261836528|gb|ACX96295.1| polyribonucleotide nucleotidyltransferase [Halothiobacillus
           neapolitanus c2]
          Length = 698

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 90/246 (36%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I++   V     GS L   G+T  L   TL       + +   G    
Sbjct: 315 RIDGRDTKTIRPITVRTGVLPRVHGSALFTRGETQALVVTTLGSARDAQLIDAVVGEYKE 374

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G       +  R +++V+         + +  +
Sbjct: 375 SFIFHYNFPPYSVGETGRFGAPKRREIGHG----NLARRGVKAVIPNPENSPYTLRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +++ D    +                VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGASLSMMDAGVEIAA-------------PVAGIAMGLIKEGNRFVV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    +++     L+ AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGTADG-VTALQMDIKINGITREIMSQALDQAKGGRLHILGI 536

Query: 234 QKDVIS 239
               ++
Sbjct: 537 MNAALA 542



 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 70/220 (31%), Gaps = 27/220 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           ++LT   +++ A G+ +V+ GDT +L T  +E              +T EY         
Sbjct: 17  VTLTTGEIARQASGAVMVQMGDTVVLVTVVVESAPEP---GQDFLPLTVEYQ-EKFYAAG 72

Query: 73  RVKREAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
           R+          GRS E    I R+I R LR +         Q+I     +  +      
Sbjct: 73  RIPGGFFKRE--GRSTEAETLIARLIDRPLRPLFPKGFYNQVQVIAQVLSLDPEVPGDIP 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                      H+ A   G +    +++    E    D  
Sbjct: 131 AMLGASAALALSGL-------------PFDAHLGAARVGYINEAFVLNPAQTE--MADSR 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
              V+  +   V +  S E     +      +    +   
Sbjct: 176 LELVVAGTEEAVLMVES-EADRLPEATMLDAVMFGHEAAQ 214


>gi|119774103|ref|YP_926843.1| polynucleotide phosphorylase/polyadenylase [Shewanella amazonensis
           SB2B]
 gi|187611289|sp|A1S467|PNP_SHEAM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|119766603|gb|ABL99173.1| Polyribonucleotide nucleotidyltransferase [Shewanella amazonensis
           SB2B]
          Length = 699

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 93/247 (37%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+ + +R +S+   V     GS L   G+T  L T TL  +        I   +  
Sbjct: 314 RIDGREPDMIRALSVMAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      ++  R + +V+  +      + +  +
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPSAEEFPYSVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ G  +AL D                 +K  VA I+ G++     + +
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDNFVV 476

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A      ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-VTALQMDIKIEGITKEIMEIALQQAYGARVHILNV 535

Query: 234 QKDVISN 240
               I +
Sbjct: 536 MDQAIGS 542



 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 80/234 (34%), Gaps = 35/234 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
           ++L   V  + A+G+ +   GDT +L T   +++       +     +   T   G +P 
Sbjct: 15  VTLETGVIARQADGAVMASMGDTTVLVTVVGKKEADPGRDFFPLTVNYQEKTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+II    +         
Sbjct: 74  --GGFFKRE---GRPSEDETLIARLIDRPIRPLFPDDFTNEVQVIITVVSVDPQIEPDIV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++    E +  ++D
Sbjct: 129 SMIGTSAALAISGI-------------PFNGPLGAARVGYVNGEYVLNPGAAELAGSELD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                T S  ++     +E  +  ++     +    D        Q+ V+ N +
Sbjct: 176 LVVAGTQSAVLMV---ESEAKSLPEEVMLGAVVYGHD--------QQQVVINAI 218


>gi|254880757|ref|ZP_05253467.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp.
           4_3_47FAA]
 gi|294778033|ref|ZP_06743467.1| polyribonucleotide nucleotidyltransferase [Bacteroides vulgatus
           PC510]
 gi|319639767|ref|ZP_07994497.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_40A]
 gi|254833550|gb|EET13859.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp.
           4_3_47FAA]
 gi|294448091|gb|EFG16657.1| polyribonucleotide nucleotidyltransferase [Bacteroides vulgatus
           PC510]
 gi|317388584|gb|EFV69433.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. 3_1_40A]
          Length = 728

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57
           RL GR+  ++R I           GS +   G+T  LT+ TL  K+   I     +    
Sbjct: 336 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIVDDVLDQHRE 395

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +         + +  D
Sbjct: 396 RFLLHYNFPPYSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAG--YPYTVRVVSD 449

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D    M             K  V+ I+ G++        
Sbjct: 450 IMESNGSSSMATVCAGTLALMDAGVAM-------------KKPVSGIAMGLIKNAGEEKY 496

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     L  AK+    ++
Sbjct: 497 AVLSDILGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSFEILEKALLQAKEGREHIL 555

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 556 NKLTECIAEP 565



 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 88/240 (36%), Gaps = 27/240 (11%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       I+L      K A+GS +++ G+T LL T    ++ VP            
Sbjct: 29  PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 82

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y    R  G   KRE   G+         R++ RALR +   +      + ++  +  
Sbjct: 83  EKYSAFGRFPGGFTKRE---GKASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIVLFS 137

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           + + D L  +   +          G ++ +    + G  +++  + 
Sbjct: 138 ADG-----------IDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFE 186

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +    D+D     T   +I+ V+G  E    S+    A +  A + I    K Q +++  
Sbjct: 187 QLEKADMDLMVAATYD-NIMMVEG--EMQEVSEQDLLAAMKAAHEAIKVHCKAQMELMEE 243


>gi|89072579|ref|ZP_01159151.1| polyribonucleotide nucleotidyltransferase [Photobacterium sp.
           SKA34]
 gi|89051683|gb|EAR57136.1| polyribonucleotide nucleotidyltransferase [Photobacterium sp.
           SKA34]
          Length = 708

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   K  
Sbjct: 314 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDGLTGEKKD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R + +V+         + +  +
Sbjct: 374 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     TD G I  +Q   +    +++     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTDDG-ITALQMDIKIEGITKEIMQIALNQAKGARKHILSV 535

Query: 234 QKDVISNE 241
             + I+  
Sbjct: 536 MDNAINTP 543



 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 62/212 (29%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +V   DT +  +   +    E    +     +   T   G +P 
Sbjct: 15  VTLETGVMARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +         Q+I     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVNPAVNPDIV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + A   G +    +++    E     +D
Sbjct: 129 TMIGTSAALTISGI-------------PFNGPIGAARVGYINDQFVLNPSNVELEESRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T    ++     +E    S++     +
Sbjct: 176 LVVAGTKDAVLMV---ESEADRLSEEQMLQAV 204


>gi|115456671|ref|NP_001051936.1| Os03g0854200 [Oryza sativa Japonica Group]
 gi|75243278|sp|Q84T68|EXOS5_ORYSJ RecName: Full=Exosome complex exonuclease RRP46 homolog; AltName:
           Full=Exosome component 5; AltName: Full=Ribosomal
           RNA-processing protein 46; Short=oRrp46
 gi|57222448|gb|AAO66540.2| putative exosome component [Oryza sativa Japonica Group]
 gi|108712165|gb|ABF99960.1| 3' exoribonuclease family, domain 1 containing protein, expressed
           [Oryza sativa Japonica Group]
 gi|113550407|dbj|BAF13850.1| Os03g0854200 [Oryza sativa Japonica Group]
 gi|215697262|dbj|BAG91256.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 238

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 71/198 (35%), Gaps = 27/198 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R  S TR     A GS     GDT +L      +       N +   I  
Sbjct: 5   RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEV 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            +               ++G+ G + +E +  + R L+S+  L+   +    +   V+  
Sbjct: 65  VWK-------------PMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGN 111

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYG 180
           DG     AI     AL                   LK    AI CG+L  G  I+D +  
Sbjct: 112 DGSLLPCAINACCAALVFAGI-------------PLKHLAVAIGCGVLEDGEVILDTNKA 158

Query: 181 EDSTIDVDANFVMTDSGH 198
           E+  +   A+ V  +S  
Sbjct: 159 EEQQLKSFAHLVFPNSRK 176


>gi|114769588|ref|ZP_01447198.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium
           HTCC2255]
 gi|114549293|gb|EAU52175.1| polyribonucleotide nucleotidyltransferase [alpha proteobacterium
           HTCC2255]
 gi|297183954|gb|ADI20075.1| hypothetical protein [uncultured alpha proteobacterium
           EB080_L11F12]
 gi|297184260|gb|ADI20378.1| hypothetical protein [uncultured alpha proteobacterium
           EB080_L27A02]
          Length = 709

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 17/243 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  + +R I     V     GS L   G+T  L   TL       + +   G   +
Sbjct: 318 RIDGRDLSTVRPIVSETAVLPRTHGSALFTRGETQALAVTTLGTGDDEQMIDALSGTYRS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R    GR   R     ++  RAL++V+         I +  +
Sbjct: 378 NFLLHYNFPPYSVGE-CGRMMGPGR---REIGHGKLAWRALQAVLPPVTEFPYTIRMVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +++ D    +        +  +L+               + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLRAPVAGVAMGLILQDSGEYA--------VLTDI 485

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   + A  + +     +  AKD    ++    + 
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKAMEQAKDGRLHILGEMANA 544

Query: 238 ISN 240
           ++ 
Sbjct: 545 LTE 547



 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 78/231 (33%), Gaps = 33/231 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A+ + +  +G+T +L         +E    +     +       G +P 
Sbjct: 16  LTLETGKIARQADSTVIATYGETSVLAAVCFAKKEKEGQSFFPLTVNYQEKYYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         QI +   V+  D      
Sbjct: 75  --GGFFKREA---RPTEKETLTARLIDRPIRPLFIPGFKHEVQITLT--VLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD----YGED 182
             A+  A  AL                     G +     G   G  +++      +   
Sbjct: 128 MVAMIAASAALTLSGA-------------PFMGPIGNCRVGFEGGQYVLNPTCDDMHELK 174

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +  D   + V+  +   V +  S E    +++     +N A ++I  +I +
Sbjct: 175 NNPDQRLDLVVAGTKDAVMMVES-EAYELTEEEMLGAINFAHEQIQPVIDM 224


>gi|150398632|ref|YP_001329099.1| polynucleotide phosphorylase/polyadenylase [Sinorhizobium medicae
           WSM419]
 gi|187611291|sp|A6UF34|PNP_SINMW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|150030147|gb|ABR62264.1| Polyribonucleotide nucleotidyltransferase [Sinorhizobium medicae
           WSM419]
          Length = 714

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 87/243 (35%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 317 RIDGRDLVTVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++  +      + +  +
Sbjct: 377 NFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  + +    A+         + D+
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAV---------LSDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G +  +Q   + A  +++     L+ AK     ++      
Sbjct: 484 LGDEDHLGDMDFKVAGTEAG-VTSLQMDIKIAGITEEIMKVALDQAKHGRVHILGEMAKA 542

Query: 238 ISN 240
           IS 
Sbjct: 543 ISE 545



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 74/229 (32%), Gaps = 31/229 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ L  +G+T +L T       +     +     +   T   G +
Sbjct: 14  RPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR       + R+I R +R +         Q+II   V+Q D    
Sbjct: 74  P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFPEGYKNDTQVIIT--VMQHDLENN 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
                         D +  +   +          G V     G + G  +++    E   
Sbjct: 126 P-------------DVVAMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
             +D     T    ++     +E    S++     +   +     +I  
Sbjct: 173 STLDLVVAGTQDAVLMV---ESEAKELSEEIMLGAVVFGQKGFQPVIDA 218


>gi|296195656|ref|XP_002745482.1| PREDICTED: exosome complex exonuclease RRP45 [Callithrix jacchus]
          Length = 440

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 97/260 (37%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   + E   P   R T+ G +  
Sbjct: 23  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVSCELVAPKLNRATE-GILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASVAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L +  + N+
Sbjct: 253 IAGVKVAEITELIQKALEND 272


>gi|183600370|ref|ZP_02961863.1| hypothetical protein PROSTU_03936 [Providencia stuartii ATCC 25827]
 gi|188020161|gb|EDU58201.1| hypothetical protein PROSTU_03936 [Providencia stuartii ATCC 25827]
          Length = 722

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 98/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +    + +   G  T 
Sbjct: 330 RIDGREKDMVRALDVRTSVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTD 389

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 390 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVMAVMPDHADFPYTVRVVSE 445

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 446 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDDFVV 492

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++  
Sbjct: 493 LSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITREIMQVALNQAKGARLHILGT 551

Query: 234 QKDVISNE 241
            +  I++ 
Sbjct: 552 MEQAINSP 559



 Score = 75.5 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 81/233 (34%), Gaps = 31/233 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           +S+    +++ A  + +V   DT +  TA  ++KV           +T  Y     + G 
Sbjct: 31  VSIETGMIARQATAAVMVNMDDTAVFVTAVAQKKV---KEGQDFFPLTVNYQERSYAAGR 87

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR G     I R+I R LR +     L   QII     +         
Sbjct: 88  IPGSFFRRE---GRPGEGETLIARLIDRPLRPLFPEGFLNEIQIIATVVSVNPQVNPDIV 144

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 145 AMIGASAALA-------------LSGVPFNGPIGAARVGFINDQYVLNPTADELKLSRLD 191

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T+S  ++     +E    S++     +    D+    I ++ +L K+ 
Sbjct: 192 LVVAGTESAVLMV---ESEADLLSEEQMLGAVVFGHDQQQIVIQEINELVKEA 241


>gi|284793943|pdb|3HKM|A Chain A, Crystal Structure Of Rice(Oryza Sativa) Rrp46
 gi|284793944|pdb|3HKM|B Chain B, Crystal Structure Of Rice(Oryza Sativa) Rrp46
 gi|284793945|pdb|3HKM|C Chain C, Crystal Structure Of Rice(Oryza Sativa) Rrp46
          Length = 246

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 71/198 (35%), Gaps = 27/198 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R  S TR     A GS     GDT +L      +       N +   I  
Sbjct: 5   RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEV 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            +               ++G+ G + +E +  + R L+S+  L+   +    +   V+  
Sbjct: 65  VWK-------------PMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGN 111

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYG 180
           DG     AI     AL                   LK    AI CG+L  G  I+D +  
Sbjct: 112 DGSLLPCAINACCAALVFAGI-------------PLKHLAVAIGCGVLEDGEVILDTNKA 158

Query: 181 EDSTIDVDANFVMTDSGH 198
           E+  +   A+ V  +S  
Sbjct: 159 EEQQLKSFAHLVFPNSRK 176


>gi|108810762|ref|YP_646529.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
           Nepal516]
 gi|108774410|gb|ABG16929.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
           Nepal516]
          Length = 731

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 97/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   +     GS L   G+T  L TATL           +   +  
Sbjct: 341 RIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 400

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+  ++     I +  +
Sbjct: 401 SFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSASEFPYTIRVVSE 456

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 457 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 503

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G +  +Q   +    +++     LN AK     ++ +
Sbjct: 504 LSDILGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGV 562

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 563 MEQAISTP 570



 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 69/212 (32%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           +++   +  + A  + +V   DT +  T   +         +     +   T   G +P 
Sbjct: 42  VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 100

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR         R+I R +R +   S L   Q+I     +         
Sbjct: 101 --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 155

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA   L                     G + A   G +    +++    E     +D
Sbjct: 156 ALIGASAVLSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 202

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +G ++ V+  +E    S++     +
Sbjct: 203 LVVAGT-AGAVLMVE--SEADILSEEQMLGAV 231


>gi|108808983|ref|YP_652899.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
           Antiqua]
 gi|108780896|gb|ABG14954.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Antiqua]
          Length = 731

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 97/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   +     GS L   G+T  L TATL           +   +  
Sbjct: 341 RIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 400

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+  ++     I +  +
Sbjct: 401 SFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSASEFPYTIRVVSE 456

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 457 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 503

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G +  +Q   +    +++     LN AK     ++ +
Sbjct: 504 LSDILGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGV 562

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 563 MEQAISTP 570



 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           +++   +  + A  + +V   DT +  T   +         +     +   T   G +P 
Sbjct: 42  VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 100

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR         R+I R +R +   S L   Q+I     +         
Sbjct: 101 --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 155

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 156 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 202

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +G ++ V+  +E    S++     +
Sbjct: 203 LVVAGT-AGAVLMVE--SEADILSEEQMLGAV 231


>gi|94987448|ref|YP_595381.1| polynucleotide phosphorylase/polyadenylase [Lawsonia
           intracellularis PHE/MN1-00]
 gi|187610280|sp|Q1MPL7|PNP_LAWIP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|94731697|emb|CAJ55060.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Lawsonia intracellularis PHE/MN1-00]
          Length = 736

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 86/246 (34%), Gaps = 27/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           +R+ GR    +R I++   +     GS L   G+T  L   TL         ++  G   
Sbjct: 322 LRIDGRDTITVRPIAIEVGLLPRTHGSALFTRGETQSLCITTLGSSTDNQRVDSLAGDTV 381

Query: 58  -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G     E    R   R      +  +AL+ ++         + I  
Sbjct: 382 KNFMLHYNFPPFSVG-----EVKPVRVSRREIGHGALAEKALKYILPSQNTFPFTVRIVA 436

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + ++++G +  AAI G  ++L D                 +   VA ++ G++       
Sbjct: 437 ETLESNGSSSMAAICGGCLSLMDAGV-------------PISAPVAGVAMGLIKEDDQFI 483

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G I  VQ   +    + D     +  A++    ++ 
Sbjct: 484 VLTDIIGDEDAFGDMDFKIAGTTKG-ITAVQMDIKITGLTTDVMRKAMEQAREARIHILS 542

Query: 233 LQKDVI 238
                +
Sbjct: 543 EMAKAL 548



 Score = 78.2 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 74/229 (32%), Gaps = 27/229 (11%)

Query: 13  EISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----MLP 67
           EI          A GS  V+ G T +L T            +     +T EY        
Sbjct: 18  EIIFETGYMATQANGSLTVQCGGTIVLVTVC----SQPLESDKGFFPLTVEYSEKMYAAG 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
           R  G+  +RE   GR   R   I R+I R +R +         QI+ +      +  +  
Sbjct: 74  RIPGSFFRREI--GRPSERETLISRLIDRPIRPMFPKGLAEDVQILANVISSDQENESDI 131

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA  A+                S   +  +AA   G L G  +++    E      
Sbjct: 132 LAVTGASAAV-------------MLSSLPFECAIAAGRIGRLNGQFVLNPTINEIELS-- 176

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D N V   S   V V    E     ++     L      I  +I LQ  
Sbjct: 177 DLNIVFAASSEAV-VMVEGEANVVEEEIIIEALEWGHKEIQPIITLQNK 224


>gi|332090702|gb|EGI95796.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 3594-74]
          Length = 696

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 101/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 300 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 359

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R++ +V+ D+       + +  
Sbjct: 360 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRSVLAVMPDMDKFP-YTVRVVS 414

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 415 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 461

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 462 VLSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 520

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 521 VMEQAIN 527



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 1   MTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 57

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 58  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 114

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 115 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 161

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 162 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 211


>gi|238750129|ref|ZP_04611632.1| Polyribonucleotide nucleotidyltransferase [Yersinia rohdei ATCC
           43380]
 gi|238711673|gb|EEQ03888.1| Polyribonucleotide nucleotidyltransferase [Yersinia rohdei ATCC
           43380]
          Length = 707

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+  +A     + +  +
Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPNAADFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDENFVV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ITALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISTP 544



 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 70/212 (33%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   +  + A  + +V   DT +  T   +         +     +   T   G +P 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR         R+I R +R +   S L   Q+I     +         
Sbjct: 75  --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +G ++ V+  +E    S+D     +
Sbjct: 177 LVVAGT-AGAVLMVE--SEADILSEDQMLGAV 205


>gi|240949645|ref|ZP_04753980.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
           NM305]
 gi|240295903|gb|EER46579.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
           NM305]
          Length = 711

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 92/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS L   G+T  L  ATL  +        +   K  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERDAQIIDELTGEKSD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHG----RLAKRGVLAVMPTAEEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITSEIMRIALNQAKGARMHILGV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 68.2 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 75/232 (32%), Gaps = 27/232 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      + E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVNEGQDFFPLTVDYQERTYAAGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+I     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFIDNQFVLNPTTSEQRLSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                TD   ++     +E    +++   A +    ++   +I+  K+ +  
Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKE 224


>gi|237709532|ref|ZP_04540013.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp.
           9_1_42FAA]
 gi|237724873|ref|ZP_04555354.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp. D4]
 gi|229436611|gb|EEO46688.1| polyribonucleotide nucleotidyltransferase [Bacteroides dorei
           5_1_36/D4]
 gi|229456588|gb|EEO62309.1| polyribonucleotide nucleotidyltransferase [Bacteroides sp.
           9_1_42FAA]
          Length = 711

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57
           RL GR+  ++R I           GS +   G+T  LT+ TL  K+   I     +    
Sbjct: 319 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIVDDVLDQHRE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +         + +  D
Sbjct: 379 RFLLHYNFPPYSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAG--YPYTVRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D    M             K  V+ I+ G++        
Sbjct: 433 IMESNGSSSMATVCAGTLALMDAGVAM-------------KKPVSGIAMGLIKNAGEEKY 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     L  AK+    ++
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSFEILEKALLQAKEGREHIL 538

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 539 NKLTECIAEP 548



 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 88/240 (36%), Gaps = 27/240 (11%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       I+L      K A+GS +++ G+T LL T    ++ VP            
Sbjct: 12  PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y    R  G   KRE   G+         R++ RALR +   +      + ++  +  
Sbjct: 66  EKYSAFGRFPGGFTKRE---GKASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIVLFS 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           + + D L  +   +          G ++ +    + G  +++  + 
Sbjct: 121 ADG-----------IDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFE 169

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +    D+D     T   +I+ V+G  E    S+    A +  A + I    K Q +++  
Sbjct: 170 QLGKADMDLMVAATYD-NIMMVEG--EMQEVSEQDLLAAMKAAHEAIKVHCKAQMELMEE 226


>gi|323499449|ref|ZP_08104421.1| polynucleotide phosphorylase/polyadenylase [Vibrio sinaloensis DSM
           21326]
 gi|323315505|gb|EGA68544.1| polynucleotide phosphorylase/polyadenylase [Vibrio sinaloensis DSM
           21326]
          Length = 706

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 95/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGERKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKSSVAGIAMGLVKEGDDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G I  +Q   +    +++     LN A+     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537

Query: 234 QKDVISN 240
             + IS 
Sbjct: 538 MDEAISG 544



 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 75/234 (32%), Gaps = 35/234 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +V   DT +  +   +    E    +     +   T   G +P 
Sbjct: 17  VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +   +     Q+I     +  D      
Sbjct: 76  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIP 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + A   G + G  +++    E  T  +D
Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELETSKLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                T+S  ++     +E    +++   + +    D        Q+  + N +
Sbjct: 178 LVVAGTESAVLMV---ESEADNLTEEEMLSAVVFGHD--------QQQAVINAI 220


>gi|260887793|ref|ZP_05899056.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena
           ATCC 35185]
 gi|330838689|ref|YP_004413269.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena
           ATCC 35185]
 gi|260862469|gb|EEX76969.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena
           ATCC 35185]
 gi|329746453|gb|AEB99809.1| polyribonucleotide nucleotidyltransferase [Selenomonas sputigena
           ATCC 35185]
          Length = 689

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 97/249 (38%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR  +++R +S    +     GS L   G T +LT  T     +E++   +   + 
Sbjct: 310 IRPDGRALDEVRPVSCEVGLLPRTHGSGLFTRGQTQVLTITTLGSVGDEQIIDGLGPEQS 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y     S G          R+ G       +  RAL  ++         I +  
Sbjct: 370 KHYIHQYNFPGYSVGEARPARGPGRREIGHG----ALAERALLPMIPSLDEFPYTIRLVS 425

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +   ++ G+ ++L +                 +K  V+ ++ G++       
Sbjct: 426 EVLESNGSSSMGSVCGSTLSLMNAGV-------------PIKRPVSGVAMGLVKDGDHYT 472

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T+ G +  +Q   + A  ++D   + L+ AK   A +++
Sbjct: 473 ILTDIQGMEDALGDMDFKVAGTEKG-VTAIQMDIKIAGITRDILLSALSQAKRGRAFILE 531

Query: 233 LQKDVISNE 241
               VI   
Sbjct: 532 KMLAVIDKP 540



 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 79/230 (34%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + + +    K A GS LV++GDT +L  AT      E +  +             G +
Sbjct: 11  RPLIIEQGKMAKQANGSVLVRYGDTAVLVAATASAEPREGIDFFPLTVDFEEKMYAAGKI 70

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR    +    R+I R +R +         QII     +  D    
Sbjct: 71  P---GGFIKRE---GRPSESAILCSRLIDRPIRPLFPEGFRNDVQIIATVLCVDQDNAPE 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            A + GA  AL                     G +A +  G + G  +++    E     
Sbjct: 125 IAGMIGASCALC-------------VSDIPFAGPIAGVKVGRVDGELVINPT--EAQRAV 169

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            D N  +  S   V +  +       ++     +      I  +++ Q++
Sbjct: 170 SDLNLTVAGSHDAVMMVEAG-ANELPEEVILEAILFGHKEIQRIVEFQQE 218


>gi|33861747|ref|NP_893308.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|81575818|sp|Q7V0R5|PNP_PROMP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|33640115|emb|CAE19650.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 721

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 97/238 (40%), Gaps = 36/238 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66
           REI LT    +  A G+ +++ GDT LL TAT   K     +      +  +Y       
Sbjct: 13  REIRLTTGLYAPQAGGAVMIECGDTSLLVTATKTTK----KQAADFLPLICDYEEKLYAA 68

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----AD 122
            R  G  ++RE   GR   R+  I R+I R +R +         QI+  C  +     AD
Sbjct: 69  GRIPGGFMRRE---GRPPERATLIARLIDRPMRPLFPSWMRDEIQIVASCLSLDERVPAD 125

Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
                  +TGA +A                      G +AA+  G++    I++  Y E 
Sbjct: 126 ----VLGVTGASIATLLA-------------EIPFYGPMAAVRVGLIGDDFILNPSYREI 168

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
              D+D     +  G IV ++  A +   S+      ++   + +++LIK Q++++ +
Sbjct: 169 EKGDLDIVVAGSPEG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVSELIKAQENLLKD 223



 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 92/251 (36%), Gaps = 31/251 (12%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R+ GR  +++R+IS +  +  K   GS L + G T +L+T TL    P   +       +
Sbjct: 323 RVDGRDLDEVRKISASAGILPKRVHGSALFQRGLTQVLSTTTL--GTPSDAQEMDDLNPS 380

Query: 61  AE------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
            E      Y   P S G          R+ G       +  RA+  V+         + +
Sbjct: 381 TEKTYLHHYNFPPYSVGETRPMRTPGRREIGHG----ALAERAITPVLPGKETFPYVLRV 436

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V+ ++G T   ++ G+ ++L D                 LK  V+  + G++     
Sbjct: 437 VSEVLSSNGSTSMGSVCGSTLSLLDAGV-------------PLKAPVSGTAMGLIKEGKE 483

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T+ G I  +Q   +            +  A+     +
Sbjct: 484 VRILTDIQGIEDFLGDMDFKVAGTEKG-ITALQMDMKITGLPVSVISDAIKKARPARLHI 542

Query: 231 IKLQKDVISNE 241
           ++  ++ I   
Sbjct: 543 LEKMQEAIDKP 553


>gi|22124608|ref|NP_668031.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis KIM 10]
 gi|45440447|ref|NP_991986.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|167399496|ref|ZP_02305020.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|21957412|gb|AAM84282.1|AE013671_9 polynucleotide phosphorylase [Yersinia pestis KIM 10]
 gi|45435304|gb|AAS60863.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|167052000|gb|EDR63408.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
          Length = 737

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 97/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   +     GS L   G+T  L TATL           +   +  
Sbjct: 347 RIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 406

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+  ++     I +  +
Sbjct: 407 SFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSASEFPYTIRVVSE 462

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 463 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 509

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G +  +Q   +    +++     LN AK     ++ +
Sbjct: 510 LSDILGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGV 568

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 569 MEQAISTP 576



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           +++   +  + A  + +V   DT +  T   +         +     +   T   G +P 
Sbjct: 48  VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 106

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR         R+I R +R +   S L   Q+I     +         
Sbjct: 107 --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 161

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 162 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 208

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +G ++ V+  +E    S++     +
Sbjct: 209 LVVAGT-AGAVLMVE--SEADILSEEQMLGAV 237


>gi|148259386|ref|YP_001233513.1| polynucleotide phosphorylase/polyadenylase [Acidiphilium cryptum
           JF-5]
 gi|326402607|ref|YP_004282688.1| polyribonucleotide nucleotidyltransferase [Acidiphilium multivorum
           AIU301]
 gi|187470957|sp|A5FVG2|PNP_ACICJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146401067|gb|ABQ29594.1| Polyribonucleotide nucleotidyltransferase [Acidiphilium cryptum
           JF-5]
 gi|325049468|dbj|BAJ79806.1| polyribonucleotide nucleotidyltransferase [Acidiphilium multivorum
           AIU301]
          Length = 717

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 92/246 (37%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR    +R I     V     GS L   G+T  L  ATL       I +   G   
Sbjct: 315 IRIDGRDTRTVRPILAEVGVLPRTHGSALFTRGETQALVVATLGTAQDEQIVDAIEGEYR 374

Query: 61  ----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  +   R+ G      ++  RA+  ++         + +  
Sbjct: 375 ERFLLHYNFPPFSVGETGRVGSPGRREVGHG----KLAWRAIHPLLPGKDKFPYTLRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A + G  +AL D                 L   VA I+ G++    G+ 
Sbjct: 431 EITESNGSSSMATVCGTSLALMDAGV-------------PLPRPVAGIAMGLIKEDKGFA 477

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     T++G +  +Q   +  + + +     L+ AKD    ++ 
Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTEAG-VTSLQMDIKITSITPEIMKIALDQAKDGRLHILG 536

Query: 233 LQKDVI 238
                +
Sbjct: 537 EMSKAL 542



 Score = 85.9 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 78/231 (33%), Gaps = 31/231 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66
           R++ L    V++ A+G+ +  +GDT +L T      V           +T  Y       
Sbjct: 16  RKLILETGKVARQADGAVVASYGDTVVLATVVGARSVKP---GQDFFPLTVNYQEKFYAA 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
            R  G   KRE   GR   R     R+I R +R +         Q+I++      +    
Sbjct: 73  GRIPGGFFKRE---GRPTERETLTSRLIDRPIRPLFPHGFRNEVQVIVNVLSHDLENEPD 129

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             ++  A  AL                     G V A   G + G  I++    + +   
Sbjct: 130 IVSLVAASAALTLSGI-------------PFFGPVGAARIGYIDGEYILNPTSAQIAESR 176

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKL 233
           +D     T+ G ++     +E    S++     +          I  +I+L
Sbjct: 177 LDLVLAGTEEGVLMV---ESEAHELSEETMLGAVTFGHAAFQPVIQAIIEL 224


>gi|254507523|ref|ZP_05119657.1| 3' exoribonuclease family, domain 2, protein [Vibrio
           parahaemolyticus 16]
 gi|219549593|gb|EED26584.1| 3' exoribonuclease family, domain 2, protein [Vibrio
           parahaemolyticus 16]
          Length = 709

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 95/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGERKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKSSVAGIAMGLVKEGDDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G I  +Q   +    +++     LN A+     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537

Query: 234 QKDVISN 240
             + IS 
Sbjct: 538 MDEAISG 544



 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +V   DT +  +   +    E    +     +   T   G +P 
Sbjct: 17  VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +   +     Q+I     +  D      
Sbjct: 76  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIV 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + A   G + G  +++    E     +D
Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELEASKLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T+S  ++     +E    +++   + +    D+   +IK   +
Sbjct: 178 LVVAGTESAVLMV---ESEADNLTEEEMLSAVVFGHDQQQAVIKAINE 222


>gi|225708190|gb|ACO09941.1| Exosome complex exonuclease RRP45 [Osmerus mordax]
          Length = 398

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 92/260 (35%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C V  G T ++T  + E  VP   R +  G +  
Sbjct: 23  RLDGRQIYDYRTIKISFG-TDY--GCCFVDLGKTRVMTQVSCELVVPKDNRPSD-GIMFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              + P ++          GRQ     ++ R + R LR     D  +L    G +  QI 
Sbjct: 79  NVELSPMASPG-----FEVGRQSELLVKLNRQLERCLRNSKCFDTESLCVVSGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHME------------DCSNKFQLSQVLKGHV 161
           +D  V+  DG    AA   A  AL    +               +  +   LS       
Sbjct: 134 VDVHVLNHDGNLMDAASVAAITALSHFRRPDVGIHGEEVTVYGSEERDPIPLSIYHMPIC 193

Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
            + S      Y +VD    E+  +D      M     I  +Q S       ++       
Sbjct: 194 VSFSFFQQGTYLLVDPCEREERVMDGLLMIAMNKHREICSIQSSG-GIMLLKEQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++ ++ +L    + N+
Sbjct: 253 IASVKVTEITELIHKALEND 272


>gi|331664778|ref|ZP_08365683.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA143]
 gi|324115230|gb|EGC09194.1| polyribonucleotide nucleotidyltransferase [Escherichia fergusonii
           B253]
 gi|331058026|gb|EGI30008.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA143]
          Length = 721

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 325 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 384

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 385 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 439

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 440 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 486

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 487 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 545

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 546 VMEQAIN 552



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 26  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 82

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 83  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 139

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 140 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 186

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 187 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 236


>gi|153004013|ref|YP_001378338.1| polynucleotide phosphorylase/polyadenylase [Anaeromyxobacter sp.
           Fw109-5]
 gi|187470964|sp|A7H9F8|PNP_ANADF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|152027586|gb|ABS25354.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 722

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 89/248 (35%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59
           R+ GR E  +R+I+    +     GS L   G+T  L   TL             G +  
Sbjct: 324 RIGGRGEADIRKITSEVGLLPRVHGSSLFTRGETQALVATTLGTAEDEQRVEMLTGMVFK 383

Query: 60  --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G       +  RALR V+         + I  D
Sbjct: 384 RFMLHYNFPPFSVGEVKFLRSPGRREIGHG----ALAERALRQVMPPEDKFPYTVRIVSD 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           +++++G +  A++ G  ++L D                 +K  VA I+ G++  G     
Sbjct: 440 IMESNGSSSMASVCGGCLSLMDAGV-------------PIKAPVAGIAMGLIKEGEKIAI 486

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     L  A D    ++  
Sbjct: 487 LSDILGDEDHLGDMDFKVCGTAEG-ITSIQMDIKIGGVTREILERALAQAADGRKHILGE 545

Query: 234 QKDVISNE 241
               I+  
Sbjct: 546 MAKAIATP 553



 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 86/234 (36%), Gaps = 30/234 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
           EI L    V+K A GS  V+ GD+ +L T       +E +  +     +       G +P
Sbjct: 14  EILLETGKVAKQAHGSVWVRMGDSIVLVTVVSAAEKKEGIDFFPLTVDYQEKLFAAGRVP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G+  +RE   GR   +     R++ R+ R +         QII        +  T  
Sbjct: 74  ---GSFFRRE---GRPTEKETLTSRIVDRSCRPLFAEGYPNETQIIATVISFDQENDTDV 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA  ALH                    G +A +  G + G  + +         + 
Sbjct: 128 LALTGASAALH-------------LSDIPFNGPIAGVRVGRVNGQFVANPTLA--QRAEA 172

Query: 188 DANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D + +M  S   IV V+G A+    S+      L   +  + +L+  Q D +  
Sbjct: 173 DLDVIMAASRDAIVMVEGGAKE--VSEQVMVDALLFGQAAVRELLDAQ-DALRK 223


>gi|149371588|ref|ZP_01891004.1| polynucleotide phosphorylase/polyadenylase [unidentified
           eubacterium SCB49]
 gi|149355215|gb|EDM43775.1| polynucleotide phosphorylase/polyadenylase [unidentified
           eubacterium SCB49]
          Length = 739

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 84/241 (34%), Gaps = 20/241 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKH 56
           +RL GR+ +++R+I           GS +   G+T  L T TL                 
Sbjct: 317 LRLDGRKTDEVRDIWCEIDYLPSVHGSAVFTRGETQALATVTLGTSRDANKIDMPSYEGE 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P  TG        S R+ G       +  R L+ ++         + +  
Sbjct: 377 ENFYLHYNFPPFCTGEARPIRGTSRREVGHG----NLAQRGLKGMIPED--CPYTVRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G +  A +    +A+ D    M    +   +     G ++    G      + D
Sbjct: 431 EVLESNGSSSMATVCAGTMAMMDAGIQMTKPVSGIAM-----GLISDAETGKYA--VLTD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I   Q   +    S +   + L  A+D    L  L+K 
Sbjct: 484 ILGDEDYLGDMDFKVTGTADG-ITACQMDIKVKGLSYEILVSALKQARDG--RLHILEKI 540

Query: 237 V 237
           V
Sbjct: 541 V 541



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 78/227 (34%), Gaps = 26/227 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           REI++      K A GS +V+ G   LL T      ++ +P       +    A  G  P
Sbjct: 16  REITIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKDLPFLPLTVDYREKFAAAGRYP 75

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KREA        +    R++ R LR +   +     Q++I       D     
Sbjct: 76  ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKNYSAETQVMIQLMSHDDD----- 124

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                    + D +  +   +         +  ++    G + G  I++    +    D+
Sbjct: 125 --------VMPDAMAGLAASAAIQLSDFPFECAISEARVGRVDGKFIINPTRAQLEESDI 176

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D   +   +  ++ V+G  E    S++     +  A + I   I  Q
Sbjct: 177 DM-MIGASADSVMMVEG--EMDEISEEEMIEAIKFAHEAIKVQIDAQ 220


>gi|256544705|ref|ZP_05472077.1| polyribonucleotide nucleotidyltransferase [Anaerococcus vaginalis
           ATCC 51170]
 gi|256399594|gb|EEU13199.1| polyribonucleotide nucleotidyltransferase [Anaerococcus vaginalis
           ATCC 51170]
          Length = 702

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 98/251 (39%), Gaps = 29/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTK- 55
           +R  GR+ +++R +S    +   A GS L + G T +L+  T     EE+V   +   + 
Sbjct: 311 IRPDGRKMDEIRPLSAEAGLLPRAHGSGLFQRGQTQVLSVLTLGSPGEEQVIDSMNREEI 370

Query: 56  -HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              +I  +Y   P   G+         R+ G       +  RAL  V+  +      I +
Sbjct: 371 TKRYIH-QYNFPPFCVGDIRPLRGPGRREVGHGH----LAERALIPVLPDTNDFPYTIRV 425

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-- 172
             +V+ ++G +  A+I G+ ++L D                 +K  VA I+ G++     
Sbjct: 426 VSEVLSSNGSSSQASICGSTLSLMDAGV-------------PIKKPVAGIAMGLIKEENS 472

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G I  +Q   + +  +++     L  A     ++
Sbjct: 473 ISILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDMKISGINKEVLQEALADAHKARLEI 531

Query: 231 IKLQKDVISNE 241
           + +    I   
Sbjct: 532 LDVITSAIDKP 542



 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 84/223 (37%), Gaps = 27/223 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
           ++S+T   V++   G CL++ GDT LL TA       E +  +     +       G +P
Sbjct: 14  DLSITIGKVAEQTNGECLIRTGDTILLVTAVASDKPREGIDFFPLICDYQEKLYAVGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   G+   ++  I R + R LR +   +     Q+I     +  D     
Sbjct: 74  ---GGFIKRE---GKASDKAILISRQMDRPLRPLFPENFYNDVQVIATPFSVDEDNEPDC 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
               GA +AL                     G VAA+S G + G  IV+ +  E     +
Sbjct: 128 MTTIGASIAL-------------GISDIPFYGPVAAVSVGYVDGKFIVNPNKDEREISSL 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           D     T    I  V+  A     S+D     + +A   I ++
Sbjct: 175 DLTVAGTADA-INMVEAGANE--LSEDEMLEAMMVAHAEIKEI 214


>gi|153835027|ref|ZP_01987694.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi HY01]
 gi|148868504|gb|EDL67603.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi HY01]
          Length = 710

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 95/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGERKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKSSVAGIAMGLVKEGDDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G I  +Q   +    +++     LN A+     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537

Query: 234 QKDVISN 240
             + IS 
Sbjct: 538 MDEAISG 544



 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 75/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +V   DT +  +   +    E    +     +   T   G +P 
Sbjct: 17  VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +   +     Q+I     +  D      
Sbjct: 76  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIP 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + A   G + G  +++    E  T  +D
Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELDTSKLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T+S  ++     +E    +++   + +    D+   +IK   +
Sbjct: 178 LVVAGTESAVLMV---ESEADNLTEEEMLSAVVFGHDQQQAVIKAINE 222


>gi|313681466|ref|YP_004059204.1| polyribonucleotide nucleotidyltransferase [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154326|gb|ADR33004.1| polyribonucleotide nucleotidyltransferase [Sulfuricurvum kujiense
           DSM 16994]
          Length = 725

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 85/240 (35%), Gaps = 23/240 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPMWIRNTKHGW 58
           +R  GR  N++R IS+   V   A  S L   G T  L   TL   +   M+   T  G 
Sbjct: 342 VRADGRALNEVRPISIETNVLPSAHASALFTRGQTQALVVLTLGGAKDAQMFENLTDSGT 401

Query: 59  ----ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y     S G      A   R+ G       +  RAL      +    + I +
Sbjct: 402 QNEGFMVHYNFPGFSVGEPSPIGAPRRRELGHG----NLAKRALEGACVRN---GQTIRL 454

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             +V++++G +  A + G ++AL      + D      +  V +G   AI         +
Sbjct: 455 VSEVLESNGSSSMATVCGGYMALRAGDIEVADPIAGVAMGMVQEGSRHAI---------L 505

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED   D+D        G I  +Q   +      D     L  AK+  + +I + 
Sbjct: 506 TDIMGLEDHDGDLDFKVA-GSKGGITAMQMDIKLGGIHLDVLKEALYQAKEARSHIIDIM 564



 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 76/212 (35%), Gaps = 26/212 (12%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVK 75
           V+  A G+  +K GDT +L T  ++E       +     +T +Y     + G      +K
Sbjct: 21  VAAQANGAAWLKCGDTVILATVVIDETD---FVDEDFLPLTVQYIEKSYAAGKFPGGFIK 77

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE    +         R++ R+LR +         QI +   V+ AD   R A +    +
Sbjct: 78  RET---KPSDFETLTSRIVDRSLRPLFPKGFANPVQITV--MVLSAD---READLQVLAL 129

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
                  ++ D          +   V+A+  G + G  + +    +     +D     + 
Sbjct: 130 NAASAALYVSDID--------IFNSVSAVRVGKIDGEIVFNPTLSQLQKSTLDLYLAGSK 181

Query: 196 SGHI-VEVQ--GSAERATFSQDHFFAMLNLAK 224
              + +E+Q  GS E           +++ A 
Sbjct: 182 EDMLMIEMQTLGSDEVEILDIGIIDPLVDPAM 213


>gi|260775173|ref|ZP_05884071.1| polyribonucleotide nucleotidyltransferase [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260608874|gb|EEX35036.1| polyribonucleotide nucleotidyltransferase [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 710

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 95/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGERKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKSSVAGIAMGLVKEGDDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G I  +Q   +    +++     LN A+     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537

Query: 234 QKDVISN 240
             + IS 
Sbjct: 538 MDEAISG 544



 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 78/234 (33%), Gaps = 35/234 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +V   DT +  +   +    E    +     +   T   G +P 
Sbjct: 17  VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +   +     Q+I     +  D      
Sbjct: 76  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIV 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + A   G + G  +++    E  T  +D
Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELETSKLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                T+ G ++ V+  +E    +++   + +    D        Q+ V+ N +
Sbjct: 178 LVVAGTE-GAVLMVE--SEADNLTEEEMLSAVVYGHD--------QQQVVINAI 220


>gi|215488482|ref|YP_002330913.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O127:H6 str. E2348/69]
 gi|254782721|sp|B7UJ59|PNP_ECO27 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|215266554|emb|CAS10993.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O127:H6 str. E2348/69]
          Length = 711

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 536 VMEQAIN 542



 Score = 69.0 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G   A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPNGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226


>gi|156975660|ref|YP_001446567.1| polynucleotide phosphorylase/polyadenylase [Vibrio harveyi ATCC
           BAA-1116]
 gi|187611334|sp|A7MZI2|PNP_VIBHB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|156527254|gb|ABU72340.1| hypothetical protein VIBHAR_03393 [Vibrio harveyi ATCC BAA-1116]
          Length = 710

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 95/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGERKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKSSVAGIAMGLVKEGDDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G I  +Q   +    +++     LN A+     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNTG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537

Query: 234 QKDVISN 240
             + IS 
Sbjct: 538 MDEAISG 544



 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +V   DT +  +   +    E    +     +   T   G +P 
Sbjct: 17  VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +   +     Q+I     +  D      
Sbjct: 76  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIP 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + A   G + G  +++    E     +D
Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELEASKLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T+S  ++     +E    +++   + +    D+   +IK   +
Sbjct: 178 LVVAGTESAVLMV---ESEADNLTEEEMLSAVVFGHDQQQAVIKAINE 222


>gi|150003997|ref|YP_001298741.1| polynucleotide phosphorylase/polyadenylase [Bacteroides vulgatus
           ATCC 8482]
 gi|187470937|sp|A6L0A5|PNP_BACV8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|149932421|gb|ABR39119.1| polyribonucleotide nucleotidyltransferase [Bacteroides vulgatus
           ATCC 8482]
          Length = 711

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57
           RL GR+  ++R I           GS +   G+T  LT+ TL  K+   I     +    
Sbjct: 319 RLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIVDDVLDQHRE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +         + +  D
Sbjct: 379 RFLLHYNFPPYSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAG--YPYTVRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D    M             K  V+ I+ G++        
Sbjct: 433 IMESNGSSSMATVCAGTLALMDAGVAM-------------KKPVSGIAMGLIKNAGEEKY 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     L  AK+    ++
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSFEILEKALLQAKEGREHIL 538

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 539 NKLTECIAEP 548



 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 88/240 (36%), Gaps = 27/240 (11%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       I+L      K A+GS +++ G+T LL T    ++ VP            
Sbjct: 12  PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y    R  G   KRE   G+         R++ RALR +   +      + ++  +  
Sbjct: 66  EKYSAFGRFPGGFTKRE---GKASDYEILTCRLVDRALRPLFPDNFHAE--VYVNIVLFS 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           + + D L  +   +          G ++ +    + G  +++  + 
Sbjct: 121 ADG-----------IDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFE 169

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +    D+D     T   +I+ V+G  E    S+    A +  A + I    K Q +++  
Sbjct: 170 QLEKADMDLMVAATYD-NIMMVEG--EMQEVSEQDLLAAMKAAHEAIKVHCKAQMELMEE 226


>gi|323491486|ref|ZP_08096669.1| polynucleotide phosphorylase/polyadenylase [Vibrio brasiliensis LMG
           20546]
 gi|323314270|gb|EGA67351.1| polynucleotide phosphorylase/polyadenylase [Vibrio brasiliensis LMG
           20546]
          Length = 710

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGERKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   +    +++     LN A+     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNEG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537

Query: 234 QKDVISN 240
             + IS 
Sbjct: 538 MDEAISG 544



 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 70/217 (32%), Gaps = 27/217 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +V   DT +  +   +    E    +     +   T   G +P 
Sbjct: 17  VTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +   +     Q+I     +  D      
Sbjct: 76  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNPDVQPDIV 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + A   G + G  +++    E  T  +D
Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELETSKLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                T+S  ++     +E    +++   A +    D
Sbjct: 178 LVVAGTESAVLMV---ESEADNLTEEEMLAAVVYGHD 211


>gi|260584718|ref|ZP_05852464.1| polyribonucleotide nucleotidyltransferase [Granulicatella elegans
           ATCC 700633]
 gi|260157741|gb|EEW92811.1| polyribonucleotide nucleotidyltransferase [Granulicatella elegans
           ATCC 700633]
          Length = 701

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 94/249 (37%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T  LT+AT     E +V   +   + 
Sbjct: 318 VRPDGRKIDEIRPLSSEIDLLPRVHGSGLFTRGQTQALTSATLAPLGEYQVIDGLGIEEG 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +    +G  G R      +  RAL+ V+         I +  
Sbjct: 378 KRFIHHYNFPQFSVGSVGR----AGSPGRREIGHGALGERALKQVIPTPEDFPYTIRLVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 434 EVLESNGSSSQASICAGTLALMAAGV-------------PIKAPVAGIAMGLISDGTNYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I  +Q   +    ++      L  AK    ++++
Sbjct: 481 VLTDIQGLEDHLGDMDFKVAGTTTG-ITALQMDIKIQGITEQILREALTQAKKARFEILE 539

Query: 233 LQKDVISNE 241
                I+  
Sbjct: 540 ELTSTIAEP 548



 Score = 84.8 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 89/232 (38%), Gaps = 28/232 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + +    ++K A G+ LV++GDT +LT A          ++T    +T  Y     + 
Sbjct: 14  RLLQVEIGQLAKQANGAVLVRYGDTVVLTAAVGT----KQAKDTDFFPLTVNYEEKMYAA 69

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G      +KRE   GR    +    R+I R +R +         QI      +  +    
Sbjct: 70  GKIPGGFIKRE---GRPSEHATLTARLIDRPIRPMFAEGFRNEVQITNTVMSVDPNCPPE 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ G+ +AL                     G +A +  G + G  +++    +    D
Sbjct: 127 MAAMFGSSLALC-------------ISDIPFDGPIAGVDVGRVNGEYVINPTTEQAELSD 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           ++ +   T +  I  V+ SA+    S++     L    + I  L+  Q+ ++
Sbjct: 174 IELSVAGTATA-INMVESSAKE--VSEEDMLGALLFGHEEIKKLVAFQQQIV 222


>gi|167625054|ref|YP_001675348.1| polynucleotide phosphorylase/polyadenylase [Shewanella halifaxensis
           HAW-EB4]
 gi|257096707|sp|B0TQ97|PNP_SHEHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|167355076|gb|ABZ77689.1| Polyribonucleotide nucleotidyltransferase [Shewanella halifaxensis
           HAW-EB4]
          Length = 704

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 93/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+ + +R +++   V     GS L   G+T  L T TL  +      ++  G  T 
Sbjct: 317 RIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKIDSIMGEYTN 376

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      ++  R + +V+  +      + I  +
Sbjct: 377 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPTAEEFPYSVRIVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     L  A      ++ +
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMQIALQQAYGARVHILNV 538

Query: 234 QKDVISNE 241
               I + 
Sbjct: 539 MDQAIGSH 546



 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 79/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A+ + L   GDT +L T       E     +     +   T   G +P 
Sbjct: 18  VTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFPLTVNYQEKTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +         Q+II    +  +      
Sbjct: 77  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEISPEVI 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + +   G + G  I++    +     ++
Sbjct: 132 SMIGTSAALSISGI-------------PFNGPLGSARVGYVNGEYILNPTVSQLVDSQLE 178

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
            +   TDS  ++     +E +   ++     +    D+    I  + +LQ +V
Sbjct: 179 LSVAGTDSAVLMV---ESEASALPEEVMLGAVVYGHDQQQVVIQAIKELQAEV 228


>gi|170765724|ref|ZP_02900535.1| polyribonucleotide nucleotidyltransferase [Escherichia albertii
           TW07627]
 gi|170124870|gb|EDS93801.1| polyribonucleotide nucleotidyltransferase [Escherichia albertii
           TW07627]
          Length = 711

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 536 VMEQAIN 542



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226


>gi|328545912|ref|YP_004306021.1| polyribonucleotide nucleotidyltransferase [polymorphum gilvum
           SL003B-26A1]
 gi|326415652|gb|ADZ72715.1| Polyribonucleotide nucleotidyltransferase [Polymorphum gilvum
           SL003B-26A1]
          Length = 708

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 86/247 (34%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I     +   A GS L   G+T  L  ATL           +  T   
Sbjct: 316 RIDGRDLKTVRPIVSEVGILPRAHGSALFTRGETQGLVVATLGTGEDEQFVDALEGTYKA 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++         + +  +
Sbjct: 376 HFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAINPMLPAKHEFPYTLRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A + G  +AL D                 LK  VA I+ G++        
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGV-------------PLKAPVAGIAMGLIKEGDRFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     L  A++    ++  
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTAEG-ITSLQMDIKIQGITEEIMKVALEQAREGRVHILGE 537

Query: 234 QKDVISN 240
               I+ 
Sbjct: 538 MSKAITE 544



 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 73/228 (32%), Gaps = 29/228 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA-TLEEKVPMWIRNTKHGWITAEYGMLPRS 69
           R + L    V++ A+G+ +  +G+T +L T  + +E  P          +T  Y     +
Sbjct: 14  RPLILETGKVARQADGAVMATYGETKVLATVVSAKEPKP----GQDFFPLTVNYQEKAFA 69

Query: 70  TG----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
            G       KRE   GR         R+I R +R +         Q+I+       +   
Sbjct: 70  AGKIPGGYFKRE---GRPSEHETLTSRLIDRPIRPLFAEGYKNDTQVIVTVLSHDMENAP 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              A+  +  AL                     G V     G + G  +++     D   
Sbjct: 127 DILALVASSAAL-------------TLSGVPFMGPVGGARVGYINGEYVLNPLI--DDMP 171

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +   + ++  +G  V +  S E     +D     +         +I  
Sbjct: 172 ESSLDLIVAGTGDAVLMVES-EAKELPEDVMLGAVMFGHSGFQTVIDA 218


>gi|312968497|ref|ZP_07782706.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           2362-75]
 gi|312286715|gb|EFR14626.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           2362-75]
          Length = 711

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 536 VMEQAIN 542



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226


>gi|311277863|ref|YP_003940094.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
           SCF1]
 gi|308747058|gb|ADO46810.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
           SCF1]
          Length = 711

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 98/246 (39%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       I +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQIIDEIMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPTMEQFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PVKSAVAGIAMGLVKEGDNFVV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILSV 536

Query: 234 QKDVIS 239
            +  I+
Sbjct: 537 MEQAIN 542



 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGK 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGGFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTPEELKVSKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVYGHEQQQIVIQNINELVKEA 226


>gi|330909222|gb|EGH37736.1| polyribonucleotide nucleotidyltransferase [Escherichia coli AA86]
          Length = 711

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 536 VMEQAIN 542



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226


>gi|257096728|sp|B7M072|PNP_ECO8A RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 711

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 536 VMEQAIN 542



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226


>gi|257096720|sp|B7LR33|PNP_ESCF3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|325498747|gb|EGC96606.1| polynucleotide phosphorylase [Escherichia fergusonii ECD227]
          Length = 711

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 536 VMEQAIN 542



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226


>gi|170018584|ref|YP_001723538.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli ATCC
           8739]
 gi|189037305|sp|B1IQV7|PNP_ECOLC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169753512|gb|ACA76211.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli ATCC
           8739]
          Length = 711

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 536 VMEQAIN 542



 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGIMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226


>gi|170682265|ref|YP_001745438.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           SMS-3-5]
 gi|191172253|ref|ZP_03033796.1| polyribonucleotide nucleotidyltransferase [Escherichia coli F11]
 gi|237706083|ref|ZP_04536564.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp.
           3_2_53FAA]
 gi|293406776|ref|ZP_06650702.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           FVEC1412]
 gi|298382516|ref|ZP_06992113.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           FVEC1302]
 gi|306816492|ref|ZP_07450624.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli NC101]
 gi|331659453|ref|ZP_08360395.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA206]
 gi|331684813|ref|ZP_08385405.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H299]
 gi|187610330|sp|A1AG69|PNP_ECOK1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610331|sp|Q0TCU5|PNP_ECOL5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610332|sp|Q8FD87|PNP_ECOL6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610333|sp|Q1R6H4|PNP_ECOUT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702650|sp|B1LFR6|PNP_ECOSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096724|sp|B7MB85|PNP_ECO45 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096727|sp|B7N0U9|PNP_ECO81 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096730|sp|B7NDF0|PNP_ECOLU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|170519983|gb|ACB18161.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           SMS-3-5]
 gi|190907563|gb|EDV67159.1| polyribonucleotide nucleotidyltransferase [Escherichia coli F11]
 gi|222034883|emb|CAP77626.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli LF82]
 gi|226899123|gb|EEH85382.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp.
           3_2_53FAA]
 gi|291426782|gb|EFE99814.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           FVEC1412]
 gi|294490926|gb|ADE89682.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           IHE3034]
 gi|298277656|gb|EFI19172.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           FVEC1302]
 gi|305850057|gb|EFM50516.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli NC101]
 gi|307625235|gb|ADN69539.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli UM146]
 gi|320194650|gb|EFW69280.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
           WV_060327]
 gi|323189213|gb|EFZ74497.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           RN587/1]
 gi|323951316|gb|EGB47191.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H252]
 gi|323957687|gb|EGB53401.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H263]
 gi|323966346|gb|EGB61780.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M863]
 gi|323979117|gb|EGB74195.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           TW10509]
 gi|327251945|gb|EGE63631.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           STEC_7v]
 gi|331054035|gb|EGI26064.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA206]
 gi|331078428|gb|EGI49634.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H299]
          Length = 711

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 536 VMEQAIN 542



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226


>gi|145698316|ref|NP_417633.4| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
           K-12 substr. MG1655]
 gi|157162649|ref|YP_001459967.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli HS]
 gi|194438823|ref|ZP_03070909.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 101-1]
 gi|238902268|ref|YP_002928064.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           BW2952]
 gi|253772000|ref|YP_003034831.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038330|ref|ZP_04872388.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp. 1_1_43]
 gi|256024260|ref|ZP_05438125.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp.
           4_1_40B]
 gi|297517605|ref|ZP_06935991.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli OP50]
 gi|301025991|ref|ZP_07189473.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           196-1]
 gi|307139851|ref|ZP_07499207.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli H736]
 gi|1172545|sp|P05055|PNP_ECOLI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610300|sp|A8A4Y0|PNP_ECOHS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096729|sp|B1XGX6|PNP_ECODH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|259534118|sp|C4ZSQ5|PNP_ECOBW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145693187|gb|AAC76198.2| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
           K-12 substr. MG1655]
 gi|157068329|gb|ABV07584.1| polyribonucleotide nucleotidyltransferase [Escherichia coli HS]
 gi|194422295|gb|EDX38296.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 101-1]
 gi|226839954|gb|EEH71975.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp. 1_1_43]
 gi|238862078|gb|ACR64076.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           BW2952]
 gi|253323044|gb|ACT27646.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260447807|gb|ACX38229.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli DH1]
 gi|299879886|gb|EFI88097.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           196-1]
 gi|313848762|emb|CAQ33499.2| polynucleotide phosphorylase monomer, subunit of polynucleotide
           phosphorylase and degradosome [Escherichia coli
           BL21(DE3)]
 gi|315137752|dbj|BAJ44911.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli DH1]
 gi|323936140|gb|EGB32434.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E1520]
 gi|323961064|gb|EGB56679.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H489]
 gi|323970271|gb|EGB65542.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA007]
 gi|332345121|gb|AEE58455.1| polyribonucleotide nucleotidyltransferase [Escherichia coli UMNK88]
          Length = 711

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 536 VMEQAIN 542



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226


>gi|332086104|gb|EGI91266.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 5216-82]
          Length = 711

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 536 VMEQAIN 542



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226


>gi|293412539|ref|ZP_06655262.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B354]
 gi|291469310|gb|EFF11801.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B354]
          Length = 711

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 536 VMEQAIN 542



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226


>gi|217035382|pdb|3CDI|A Chain A, Crystal Structure Of E. Coli Pnpase
          Length = 723

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 321 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 380

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 381 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 435

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 436 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 482

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 483 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 541

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 542 VMEQAIN 548



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 22  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 78

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 79  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 135

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 136 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 182

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 183 LVVAGTEAAVLMV---ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 232


>gi|193067267|ref|ZP_03048235.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           E110019]
 gi|192959224|gb|EDV89659.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           E110019]
          Length = 711

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 536 VMEQAIN 542



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K  
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKKA 226


>gi|157158403|ref|YP_001464640.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           E24377A]
 gi|187775793|ref|ZP_02798176.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4196]
 gi|188024828|ref|ZP_02774262.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4113]
 gi|188495596|ref|ZP_03002866.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 53638]
 gi|189010332|ref|ZP_02806314.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4076]
 gi|189401923|ref|ZP_02779152.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4401]
 gi|189403294|ref|ZP_02794589.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4486]
 gi|189404087|ref|ZP_02787137.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4501]
 gi|189404797|ref|ZP_02811056.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC869]
 gi|189405568|ref|ZP_02822772.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC508]
 gi|193061952|ref|ZP_03043048.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E22]
 gi|194427762|ref|ZP_03060309.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B171]
 gi|194433724|ref|ZP_03065999.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
           1012]
 gi|195938384|ref|ZP_03083766.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 str. EC4024]
 gi|208809595|ref|ZP_03251932.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4206]
 gi|208812895|ref|ZP_03254224.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4045]
 gi|208818367|ref|ZP_03258687.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4042]
 gi|209397723|ref|YP_002272635.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4115]
 gi|217327602|ref|ZP_03443685.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. TW14588]
 gi|254795115|ref|YP_003079952.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 str. TW14359]
 gi|256018916|ref|ZP_05432781.1| polynucleotide phosphorylase/polyadenylase [Shigella sp. D9]
 gi|261228176|ref|ZP_05942457.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255032|ref|ZP_05947565.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 str. FRIK966]
 gi|293449501|ref|ZP_06663922.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B088]
 gi|307313129|ref|ZP_07592755.1| polyribonucleotide nucleotidyltransferase [Escherichia coli W]
 gi|187610299|sp|A7ZS61|PNP_ECO24 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610334|sp|Q8X9M3|PNP_ECO57 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611306|sp|Q3YX77|PNP_SHISS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702649|sp|B5YS54|PNP_ECO5E RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096725|sp|B7LH99|PNP_ECO55 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096726|sp|B7NKN3|PNP_ECO7I RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096731|sp|B6I1N9|PNP_ECOSE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157080433|gb|ABV20141.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           E24377A]
 gi|187770877|gb|EDU34721.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4196]
 gi|188016356|gb|EDU54478.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4113]
 gi|188490795|gb|EDU65898.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 53638]
 gi|189001076|gb|EDU70062.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4076]
 gi|189358585|gb|EDU77004.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4401]
 gi|189361407|gb|EDU79826.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4486]
 gi|189367622|gb|EDU86038.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4501]
 gi|189374178|gb|EDU92594.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC869]
 gi|189379858|gb|EDU98274.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC508]
 gi|192932172|gb|EDV84770.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E22]
 gi|194414270|gb|EDX30545.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B171]
 gi|194417987|gb|EDX34081.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
           1012]
 gi|208729396|gb|EDZ78997.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4206]
 gi|208734172|gb|EDZ82859.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4045]
 gi|208738490|gb|EDZ86172.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4042]
 gi|209159123|gb|ACI36556.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC4115]
 gi|217319969|gb|EEC28394.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. TW14588]
 gi|254594515|gb|ACT73876.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 str. TW14359]
 gi|291322591|gb|EFE62020.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B088]
 gi|306907040|gb|EFN37548.1| polyribonucleotide nucleotidyltransferase [Escherichia coli W]
 gi|315062472|gb|ADT76799.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli W]
 gi|320181440|gb|EFW56358.1| Polyribonucleotide nucleotidyltransferase [Shigella boydii ATCC
           9905]
 gi|320189518|gb|EFW64177.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. EC1212]
 gi|320202078|gb|EFW76653.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
           EC4100B]
 gi|320640236|gb|EFX09808.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 str. G5101]
 gi|320645533|gb|EFX14542.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H- str. 493-89]
 gi|320650843|gb|EFX19300.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H- str. H 2687]
 gi|320656224|gb|EFX24136.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320661914|gb|EFX29322.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320666749|gb|EFX33728.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323162858|gb|EFZ48693.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           E128010]
 gi|323165122|gb|EFZ50912.1| polyribonucleotide nucleotidyltransferase [Shigella sonnei 53G]
 gi|323376940|gb|ADX49208.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KO11]
 gi|323941734|gb|EGB37913.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E482]
 gi|323946980|gb|EGB42996.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H120]
 gi|324119531|gb|EGC13413.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E1167]
 gi|326337866|gb|EGD61700.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. 1125]
 gi|326347435|gb|EGD71160.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
           str. 1044]
          Length = 711

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 536 VMEQAIN 542



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226


>gi|300918919|ref|ZP_07135478.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           115-1]
 gi|300413945|gb|EFJ97255.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           115-1]
          Length = 734

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 452

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 499

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 559 VMEQAIN 565



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 39  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 96  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 200 LVVAGTEAAVLMV---ESEAQLLSEDQMLCAVVFGHEQQQVVIQNINELVKEA 249


>gi|91203627|emb|CAJ71280.1| stronly similar to polynucleotide phosphorylase (PNPase)
           [Candidatus Kuenenia stuttgartiensis]
          Length = 705

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 88/250 (35%), Gaps = 28/250 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
           +R   R    +R I+    +     GS L   G+T  +   TL     E+KV   + +  
Sbjct: 315 LRPDSRGLKDIRPITCEVGILPRVHGSALFTRGETQAIVVVTLGTTSDEQKVDG-LEDEY 373

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                 +Y   P   G          R+ G       +  RAL  V+           + 
Sbjct: 374 SKKFMLDYNFPPFCVGETKPLRGPGRREIGHG----ALAERALAEVLPPPNKFPYTTRVV 429

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            D+ +++G +  A++ G  +AL D                 +K  VA I+ G++     V
Sbjct: 430 SDITESNGSSSMASVCGGTLALMDAGV-------------PIKAPVAGIAMGLVKEENSV 476

Query: 176 ----DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
               D+   ED   D+D     T  G +  +Q   + A  ++      L  A++    ++
Sbjct: 477 CILSDILGTEDHLGDMDFKVAGTAQG-VTALQMDIKIAGITEKIMRDALAQAREGRLHIL 535

Query: 232 KLQKDVISNE 241
           +  + VI   
Sbjct: 536 QELEKVIEKP 545



 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 91/236 (38%), Gaps = 31/236 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL--EEK--VPMWIRNTKHGWITAEYGML 66
           R +S+    V++ A+G+ LV++G+T +L TA    EEK  V        +   T   G  
Sbjct: 13  RALSIETGRVARQADGAVLVQYGETIVLVTAVSASEEKGNVDFLPLTVDYREKTYAAGKF 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR   +     R+I R +R +   +     Q  +   V+ AD    
Sbjct: 73  P---GGFFKRE---GRPSQKEILTMRLIDRPIRPLFPDTYFREVQ--VMSIVLSADKEND 124

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+ GA  AL                S        ++  G +    I++  + E + 
Sbjct: 125 PDILAMVGASAALS-------------ISSIPFCKPTGSVRVGQIEEKFIINPTHAELAQ 171

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             +D     T+   ++ V+ SA+     ++     +      I ++I LQ ++I  
Sbjct: 172 SSMDIVISGTEDA-VMMVEASAKEIP--EEQMVDAIMFGHAAIKEIITLQHELIEK 224


>gi|110636259|ref|YP_676467.1| polynucleotide phosphorylase/polyadenylase [Mesorhizobium sp. BNC1]
 gi|123161513|sp|Q11BC3|PNP_MESSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110287243|gb|ABG65302.1| 3' exoribonuclease [Chelativorans sp. BNC1]
          Length = 715

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59
           R+ GR    +R I     V     GS +   G+T  L  ATL         ++  G +  
Sbjct: 317 RIDGRDLRSVRPIVAEVGVLPRTHGSAVFTRGETQALVVATLGTGEDEQYVDSLTGTVKE 376

Query: 60  --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++         I +  +
Sbjct: 377 TFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAVHPLLPAPEQFPYTIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  + +    A+         + D+
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAV---------LSDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G +  +Q   +    +++     L  AKD    ++    + 
Sbjct: 484 LGDEDHLGDMDFKVAGTAEG-VTSLQMDIKITGITEEIMKVALEQAKDGRLHILGEMANA 542

Query: 238 ISN 240
           +S 
Sbjct: 543 LSE 545



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 82/240 (34%), Gaps = 46/240 (19%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ L  +G+T +L T       +  +  +     +   T   G +
Sbjct: 14  RPLILETGKIARQADGAVLATYGETVVLATVVSAKEPKPGIDFFPLTVNYQEKTFAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR   +   + R+I R +R +         Q+II   V+Q D    
Sbjct: 74  P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFVEGYKNDTQVIIT--VLQHDLEND 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++  A  AL                     G V A   G + G  I++    E   
Sbjct: 126 PDILSMVAASAAL-------------TLSGVPFMGPVGAARVGYVGGEYILNPHLDE--M 170

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHF---------------FAMLNLAKDRIAD 229
            +   + V+  +   V +  S E     +D                  A++ LA+    +
Sbjct: 171 AETKLDLVVAGTSDAVLMVES-EAHELPEDVMLGAVMFGHRNFQPVIDAIIKLAEVAAKE 229


>gi|66356472|ref|XP_625414.1| archeo-eukaryotic exosomal RNAse [Cryptosporidium parvum Iowa II]
 gi|46226443|gb|EAK87443.1| archeo-eukaryotic exosomal RNAse [Cryptosporidium parvum Iowa II]
          Length = 351

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 94/266 (35%), Gaps = 50/266 (18%)

Query: 1   MRLSGRQENQMREISL------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT 54
           +R  GR+  ++R I         R +    +G+   + G   L+ +      +   I  T
Sbjct: 98  IRQDGRKLTEIRRIKCIINEGNQRGIE---DGNVYFEQGQNKLIVSIVGPVPISGNINYT 154

Query: 55  KHG---WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
            +     I   + + P S+ +R KR    G+      E   +I R   SV+        Q
Sbjct: 155 NNNSGVQINCNFRVSPFSSQDRRKR----GKNDRFCIESGLIISRTFSSVIC-DQYSKSQ 209

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
           III+  +++ DG  R+AAI    +AL      M+D              + + +CG+   
Sbjct: 210 IIINIIILEGDGSVRSAAINATSIALAISGISMKDL-------------IVSATCGLYGK 256

Query: 172 YPIVDLDYGE---------------DSTIDVDANFVMTDSGHI--VEVQGSAERATFSQD 214
             + DL   E               D+ ID D   V   +  I  V +  + +      +
Sbjct: 257 QVLYDLTQSEMESLKGTLLMAIHSTDNDIDTDTENVGNGNSDISPVTIDLNTK---LKPE 313

Query: 215 HFFAMLNLAKDRIADLIKLQKDVISN 240
               ++N           + +D + N
Sbjct: 314 MIEFLMNETFSACKQFSVIIRDFLKN 339


>gi|110643405|ref|YP_671135.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 536]
 gi|117625460|ref|YP_858783.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli APEC
           O1]
 gi|218560236|ref|YP_002393149.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli S88]
 gi|218691456|ref|YP_002399668.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli ED1a]
 gi|227887888|ref|ZP_04005693.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 83972]
 gi|300977831|ref|ZP_07174071.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           200-1]
 gi|300990763|ref|ZP_07179335.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           45-1]
 gi|301047994|ref|ZP_07195036.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           185-1]
 gi|331654770|ref|ZP_08355770.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M718]
 gi|110344997|gb|ABG71234.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 536]
 gi|115514584|gb|ABJ02659.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli APEC
           O1]
 gi|218367005|emb|CAR04776.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli S88]
 gi|218429020|emb|CAR09967.2| polynucleotide phosphorylase/polyadenylase [Escherichia coli ED1a]
 gi|227835284|gb|EEJ45750.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 83972]
 gi|300300137|gb|EFJ56522.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           185-1]
 gi|300308208|gb|EFJ62728.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           200-1]
 gi|300407071|gb|EFJ90609.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           45-1]
 gi|307555260|gb|ADN48035.1| polyribonucleotide nucleotidyltransferase [Escherichia coli ABU
           83972]
 gi|312947723|gb|ADR28550.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315288934|gb|EFU48332.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           110-3]
 gi|315294909|gb|EFU54248.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           153-1]
 gi|315297884|gb|EFU57154.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           16-3]
 gi|324008763|gb|EGB77982.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           57-2]
 gi|324012110|gb|EGB81329.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           60-1]
 gi|331048152|gb|EGI20229.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M718]
          Length = 734

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 452

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 499

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 559 VMEQAIN 565



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 39  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 96  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 200 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 249


>gi|62181793|ref|YP_218210.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161616288|ref|YP_001590253.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|224585080|ref|YP_002638879.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238910077|ref|ZP_04653914.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|15029403|gb|AAK81870.1|AF399929_1 polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|62129426|gb|AAX67129.1| polynucleotide phosphorylase, member of mRNA degradosome
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161365652|gb|ABX69420.1| hypothetical protein SPAB_04093 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|224469608|gb|ACN47438.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|312914308|dbj|BAJ38282.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320087729|emb|CBY97493.1| polyribonucleotide nucleotidyltransferase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321225966|gb|EFX51020.1| Polyribonucleotide nucleotidyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322615287|gb|EFY12208.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618354|gb|EFY15245.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622841|gb|EFY19685.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322626837|gb|EFY23634.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631406|gb|EFY28166.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635327|gb|EFY32041.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322643462|gb|EFY40025.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647102|gb|EFY43603.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648905|gb|EFY45350.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655097|gb|EFY51408.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657700|gb|EFY53968.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664196|gb|EFY60394.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322667479|gb|EFY63641.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674727|gb|EFY70819.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675640|gb|EFY71713.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682276|gb|EFY78299.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684879|gb|EFY80877.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322716280|gb|EFZ07851.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323131642|gb|ADX19072.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323199033|gb|EFZ84130.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323204267|gb|EFZ89276.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207614|gb|EFZ92561.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323211333|gb|EFZ96177.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323214725|gb|EFZ99474.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323221205|gb|EGA05631.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323224054|gb|EGA08347.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230297|gb|EGA14416.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233273|gb|EGA17367.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239310|gb|EGA23360.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323242439|gb|EGA26465.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323246949|gb|EGA30915.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323254118|gb|EGA37938.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323255235|gb|EGA39012.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262698|gb|EGA46254.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264008|gb|EGA47516.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269394|gb|EGA52849.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326625033|gb|EGE31378.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326629307|gb|EGE35650.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 721

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 325 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 384

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 385 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 439

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 440 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 486

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 487 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 545

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 546 VMEQAIN 552



 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 75/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 26  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 82

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 83  IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 139

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 140 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 186

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I  +  L K+ 
Sbjct: 187 LVVAGTEAAVLMV---ESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEA 236


>gi|222147153|ref|YP_002548110.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium vitis S4]
 gi|254782700|sp|B9JYL0|PNP_AGRVS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|221734143|gb|ACM35106.1| polyribonucleotide nucleotidyltransferase [Agrobacterium vitis S4]
          Length = 714

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 90/243 (37%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 316 RIDGRDLETVRAIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++         + +  +
Sbjct: 376 RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPSPEQFPYTLRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  +L+G   A+         + D+
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAV---------LSDI 482

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   + A  +++     L  A++    ++    + 
Sbjct: 483 LGDEDHLGDMDFKVAGTEAG-ITSLQMDIKIAGITEEIMKVALAQAQNGRKHILGEMANA 541

Query: 238 ISN 240
           I+ 
Sbjct: 542 ITE 544



 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 76/229 (33%), Gaps = 31/229 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ L  +G+T +L T     + +     +     +   T   G +
Sbjct: 14  RPLKLETGKIARQADGAVLASYGETVVLATVVSAKSPKPGQDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR   +   + R+I R +R +         Q+++   VIQ D    
Sbjct: 74  P---GGYFKRE---GRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVT--VIQHDLEND 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++  A  AL                     G V     G + G  +++    E   
Sbjct: 126 PDVLSMVAASAAL-------------TLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
             +D     T    ++     +E    ++D     +         +I  
Sbjct: 173 SVLDLVVAGTQDAVLMV---ESEAKELNEDVMLGAVMFGHRGFQPVIDA 218


>gi|254446979|ref|ZP_05060446.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           HTCC5015]
 gi|198263118|gb|EDY87396.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           HTCC5015]
          Length = 698

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 85/233 (36%), Gaps = 26/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R IS+   V     GS L   G+T  L   TL  +    + +   G    
Sbjct: 316 RIDGRDTRTVRPISVKTGVLPRTHGSALFTRGETQALVVTTLGTERDAQLIDDLAGEYKD 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R +++V+         I    +
Sbjct: 376 NFLFHYNFPPYCVGETGFIGSPKRREIGHG----KLAKRGVQAVMPAQDDFPYTIRAVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G+ +A+ D                 LK  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGSSLAMMDAGV-------------PLKAPVAGIAMGLIKEGDQFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           + D+   ED   D+D     TD G +  +Q   +    +++     L  AK  
Sbjct: 479 LTDILGDEDHLGDMDFKVAGTD-GGVTALQMDIKIQGITREIMAQALEEAKAG 530



 Score = 85.5 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 86/235 (36%), Gaps = 28/235 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
            +++    V++ A GS +V   DT +L TAT  ++       +     +   T   G +P
Sbjct: 14  PVTIETGEVARQATGSVIVNMNDTVVLVTATGRKEAKPDQAFFPLTVNYQEKTYAAGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G+  KRE   GR   +     R+I R +R +     +   QI+     +  +     
Sbjct: 74  ---GSFFKRE---GRPSEKETLTARLIDRPIRPLFPKGFMNEVQIVATVVSLNPEVDPEV 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ G   AL                     G + A   G   G  +++    +  T D+
Sbjct: 128 PAMIGTSAALSISGI-------------PFDGPIGAAQVGYRDGEYLLNPSKTDLETSDL 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                 T+   ++     +E    S+D     +    +++  +++  K+ ++ EV
Sbjct: 175 ALTVAGTEDAVLMV---ESEANCLSEDIMLGAVMFGHEKMQAVVQAVKE-LAEEV 225


>gi|281180208|dbj|BAI56538.1| polynucleotide phosphorylase [Escherichia coli SE15]
          Length = 734

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 452

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 499

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 559 VMEQAIN 565



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 39  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 96  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 200 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 249


>gi|254516613|ref|ZP_05128672.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           NOR5-3]
 gi|219675036|gb|EED31403.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           NOR5-3]
          Length = 704

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 89/247 (36%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R+I+    V   A GS L   G+T  +   TL       I +   G    
Sbjct: 314 RIDGRDTRTVRQIACEVDVLAKAHGSALFTRGETQAIGAVTLGSTRDAQIIDALEGERRD 373

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G   +    S R+ G      R+  R L +V+ DL       I +  
Sbjct: 374 PFMLHYNFPPYSVGEAGRVGFTSRREIGHG----RLARRGLAAVLPDLEEFP-YTIRVVS 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++    +A+                   LK  VA I+ G++       
Sbjct: 429 EITESNGSSSMASVCVGSLAMMTAGV-------------PLKAPVAGIAMGLVKEGNQFA 475

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G +  +Q   +    ++      L  A      ++ 
Sbjct: 476 VLTDILGDEDHLGDMDFKVAGTANG-VTALQMDIKIEGITEQIMEIALEQAMQARLHILG 534

Query: 233 LQKDVIS 239
               V++
Sbjct: 535 QMNAVLA 541



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 79/232 (34%), Gaps = 34/232 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ LV   +T +L T   E    E    +     +       G +P 
Sbjct: 15  VTLETGRIARQASGAVLVTVENTSVLVTVVAEKTAREGRDFFPLAVHYIEKAYSVGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126
             G   KREA   R   +     R+I R +R +     +   Q+I  C V+ AD      
Sbjct: 74  --GGFFKREA---RPSEKETLTSRLIDRPIRPLFPNGFMNEVQVI--CTVMSADKHIDPD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185
             A+ G   AL                     G + A   G       I++  Y +    
Sbjct: 127 IPAMIGTSAALA-------------ISGCPFNGPIGAARVGFNDAEGYILNPTYDQLPGS 173

Query: 186 DVDANFVMTDSGHI-VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            ++     T+   + VE Q        ++D     +  A   +  +IK  ++
Sbjct: 174 KLEMVVAGTEDAVLMVESQADQ----LTEDQMLGAVLFAHQEMQVVIKAVQE 221


>gi|331648965|ref|ZP_08350053.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M605]
 gi|331042712|gb|EGI14854.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M605]
          Length = 734

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 452

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 499

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 559 VMEQAIN 565



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 39  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 96  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 200 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 249


>gi|255534604|ref|YP_003094975.1| Polyribonucleotide nucleotidyltransferase [Flavobacteriaceae
           bacterium 3519-10]
 gi|255340800|gb|ACU06913.1| Polyribonucleotide nucleotidyltransferase [Flavobacteriaceae
           bacterium 3519-10]
          Length = 780

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 77/231 (33%), Gaps = 20/231 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTK 55
           +RL GR    +R I         A GS +   G+T  LT  TL        V     N  
Sbjct: 320 IRLDGRTPETIRPIWSEVDYLPGAHGSAVFTRGETQSLTAVTLGSVKDANMVDSVAINYD 379

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +    Y   P STG        S R+ G       +  RAL  ++         I I 
Sbjct: 380 EKFF-LHYNFPPFSTGEARPLRGTSRREVGHG----NLAQRALSRIIPAE--NPYTIRIV 432

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            D+++++G +  A +    +AL D    +    +   +  V        +        + 
Sbjct: 433 SDILESNGSSSMATVCAGTLALMDAGVQITKPVSGIAMGLVTDPESGKFTV-------LS 485

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           D+   ED   D+D     T  G I   Q   +    S D     L  A++ 
Sbjct: 486 DILGDEDHLGDMDFKVTGTADG-ITACQMDIKIQGLSMDIMETALKQAREG 535



 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 83/237 (35%), Gaps = 30/237 (12%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           REI++      K A GS +V+ G T LL T          V        +       G +
Sbjct: 17  REITIETGKLAKQANGSVVVRMGGTMLLATVVANKDASPGVDFLPLTVDYREKFYSGGKI 76

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   GN  +REA   R         R++ R LR +         Q++I   +I  D    
Sbjct: 77  P---GNFFRREA---RPSDEEILTMRLVDRVLRPLFPDDFHAEVQVMIS--LISYD---- 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                     + + L  +   +          G ++ ++   + G  +V+    E+    
Sbjct: 125 -------KECMPEALAGLAASAAIAITDIPFNGPMSEVTVARIDGQLVVNPS-RENLD-K 175

Query: 187 VDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            D N  V      IV V+G  +    +++     +  A + I   ++ Q + ++  V
Sbjct: 176 ADLNILVGATKDSIVMVEGVMDE--ITEEEMIEAIKFAHEEIKVQVEAQ-ERLAERV 229


>gi|218706786|ref|YP_002414305.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           UMN026]
 gi|300897928|ref|ZP_07116307.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           198-1]
 gi|301022018|ref|ZP_07185961.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           69-1]
 gi|331674702|ref|ZP_08375461.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA280]
 gi|218433883|emb|CAR14800.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           UMN026]
 gi|284923188|emb|CBG36282.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 042]
 gi|300358358|gb|EFJ74228.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           198-1]
 gi|300397733|gb|EFJ81271.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           69-1]
 gi|331068141|gb|EGI39537.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA280]
          Length = 734

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 452

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 499

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 559 VMEQAIN 565



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 39  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 96  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 200 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 249


>gi|218555736|ref|YP_002388649.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI1]
 gi|218362504|emb|CAR00128.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI1]
          Length = 734

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 452

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 499

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 559 VMEQAIN 565



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 39  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 96  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 200 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 249


>gi|89109929|ref|AP_003709.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
           K-12 substr. W3110]
 gi|170082701|ref|YP_001732021.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
           K-12 substr. DH10B]
 gi|254163108|ref|YP_003046216.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli B str.
           REL606]
 gi|300929854|ref|ZP_07145300.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           187-1]
 gi|300955750|ref|ZP_07168095.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           175-1]
 gi|301644875|ref|ZP_07244847.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           146-1]
 gi|331643864|ref|ZP_08344995.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H736]
 gi|606104|gb|AAA57967.1| polynucleotide phosphorylase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|85675960|dbj|BAE77210.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
           K12 substr. W3110]
 gi|169890536|gb|ACB04243.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
           K-12 substr. DH10B]
 gi|253975009|gb|ACT40680.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli B str.
           REL606]
 gi|253979165|gb|ACT44835.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           BL21(DE3)]
 gi|300317383|gb|EFJ67167.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           175-1]
 gi|300462216|gb|EFK25709.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           187-1]
 gi|301076820|gb|EFK91626.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           146-1]
 gi|309703592|emb|CBJ02932.1| polyribonucleotide nucleotidyltransferase [Escherichia coli ETEC
           H10407]
 gi|331037335|gb|EGI09559.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H736]
          Length = 734

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 452

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 499

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 559 VMEQAIN 565



 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 39  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 96  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 200 LVVAGTEAAVLMV---ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 249


>gi|88797627|ref|ZP_01113216.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Reinekea sp. MED297]
 gi|88779799|gb|EAR10985.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Reinekea sp. MED297]
          Length = 706

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 96/246 (39%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R+I +   V   A GS L   G+T  L T TL    + K+   +  T   
Sbjct: 319 RIDGRDGKTVRDIKVEVGVLPGAHGSALFTRGETQALVTTTLGTLRDGKMEDMLTGTITD 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     R+  R + +++  +      + +  +
Sbjct: 379 NFMLHYNFPPFSVGEAGR----IGGVGRREIGHGRLAKRGVLAMMPNTDDFPYTVRVVSE 434

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +A+ D                 +K  VA I+ G++        
Sbjct: 435 ITESNGSSSMASVCGASLAMMDAGV-------------PVKKPVAGIAMGLVKEGDKFTV 481

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G +  +Q   +    +++     L  A D    +++ 
Sbjct: 482 LTDILGDEDHLGDMDFKVAGTENG-VTALQMDIKIQGITEEIMEIALGQAMDARLHILRE 540

Query: 234 QKDVIS 239
              VI 
Sbjct: 541 MAQVIG 546



 Score = 78.2 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 73/220 (33%), Gaps = 29/220 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKF-GDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           ++++    V++ A GS +    GDT +L T     ++      +  +  +       G +
Sbjct: 17  DVTIETGRVARQATGSAICTMNGDTVVLATVVAKDSVSPGQDFFPLSVHYQEKFYSVGRI 76

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   +     R+I R +R +     +   Q+II+           
Sbjct: 77  P---GGYLKRE---GRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVIINVLSANKTDDPD 130

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185
            AA+     AL                     G + A   G       +++  + +  T 
Sbjct: 131 IAAMLATSAALA-------------VSGVPFNGPIGAARVGYTDAEGYLLNPTFEQLETS 177

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
            +D     T    ++     +E    S+D     +  A  
Sbjct: 178 RLDMVVAGTQDAVLMV---ESEAQELSEDQMLGAVLFAHQ 214


>gi|213052977|ref|ZP_03345855.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213425438|ref|ZP_03358188.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213582311|ref|ZP_03364137.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213609547|ref|ZP_03369373.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213646150|ref|ZP_03376203.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|289825796|ref|ZP_06544964.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
          Length = 721

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 325 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 384

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 385 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 439

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 440 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 486

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 487 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 545

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 546 VMEQAIN 552



 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 75/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 26  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 82

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 83  IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 139

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 140 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 186

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I  +  L K+ 
Sbjct: 187 LVVAGTEAAVLMV---ESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEA 236


>gi|157962873|ref|YP_001502907.1| polynucleotide phosphorylase/polyadenylase [Shewanella pealeana
           ATCC 700345]
 gi|257096708|sp|A8H735|PNP_SHEPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157847873|gb|ABV88372.1| Polyribonucleotide nucleotidyltransferase [Shewanella pealeana ATCC
           700345]
          Length = 704

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 93/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+ + +R +++   V     GS L   G+T  L T TL  +      ++  G  T 
Sbjct: 317 RIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKIDSIMGEYTN 376

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      ++  R + +V+  +      + I  +
Sbjct: 377 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPTAEEFPYSVRIVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     L  A      ++ +
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMQIALKQAYGARVHILDV 538

Query: 234 QKDVISNE 241
               IS  
Sbjct: 539 MDRAISGH 546



 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 79/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A+ + L   GDT +L T       E     +     +   T   G +P 
Sbjct: 18  VTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFPLTVNYQEKTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +         Q+II    +  +      
Sbjct: 77  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEISPEVI 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + +   G + G  I++    +     ++
Sbjct: 132 SMIGTSAALSISGI-------------PFNGPLGSARVGYVNGEYILNPTVSQLVDSQLE 178

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
            +   T+S  ++     +E +   ++     +    D+    I  + +LQ +V
Sbjct: 179 LSVAGTESAVLMV---ESEASALPEEVMLGAVVYGHDQQQVVIQAIKELQAEV 228


>gi|262363252|gb|ACY59973.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis D106004]
          Length = 664

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 97/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   +     GS L   G+T  L TATL           +   +  
Sbjct: 274 RIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 333

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+  ++     I +  +
Sbjct: 334 SFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSASEFPYTIRVVSE 389

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 390 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 436

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G +  +Q   +    +++     LN AK     ++ +
Sbjct: 437 LSDILGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGV 495

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 496 MEQAISTP 503



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 19/150 (12%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  +RE   GR         R+I R +R +   S L   Q+I     +         A+
Sbjct: 34  GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIVAL 90

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  AL                     G + A   G +    +++    E     +D  
Sbjct: 91  IGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLDLV 137

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAML 220
              T +G ++ V+  +E    S++     +
Sbjct: 138 VAGT-AGAVLMVE--SEADILSEEQMLGAV 164


>gi|229900960|ref|ZP_04516084.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
           Nepal516]
 gi|187611438|sp|Q1CM51|PNP_YERPN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|229682299|gb|EEO78391.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
           Nepal516]
          Length = 705

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 97/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   +     GS L   G+T  L TATL           +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+  ++     I +  +
Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSASEFPYTIRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G +  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISTP 544



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 69/212 (32%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           +++   +  + A  + +V   DT +  T   +         +     +   T   G +P 
Sbjct: 16  VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR         R+I R +R +   S L   Q+I     +         
Sbjct: 75  --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA   L                     G + A   G +    +++    E     +D
Sbjct: 130 ALIGASAVLSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +G ++ V+  +E    S++     +
Sbjct: 177 LVVAGT-AGAVLMVE--SEADILSEEQMLGAV 205


>gi|114571589|ref|YP_758269.1| polynucleotide phosphorylase/polyadenylase [Maricaulis maris MCS10]
 gi|122314882|sp|Q0AK62|PNP_MARMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|114342051|gb|ABI67331.1| Polyribonucleotide nucleotidyltransferase [Maricaulis maris MCS10]
          Length = 710

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 90/247 (36%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  +Q+R I     +     GS L   G+T  L  ATL           +  T   
Sbjct: 317 RIDGRSLDQVRSIVSEAGILPRTHGSALFTRGETQALVVATLGTGEDEQFIDALTGTYKE 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R A   R+ G      ++  RA+++V+         I +  +
Sbjct: 377 RFMLHYNFPPYSVGETSFRLAPGRREIGHG----KLAWRAVKAVLPTKEDFPYTIRLVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A + GA +++ D                 +   V+ I+ G++    G  +
Sbjct: 433 ITESNGSSSMATVCGASLSMMDAGV-------------PITRPVSGIAMGLIKDPEGIAV 479

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   + A   ++     L  A      +++ 
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTTEG-VTSLQMDIKIAGIDEEIMKTALAQASGGRLHILEE 538

Query: 234 QKDVISN 240
               +  
Sbjct: 539 MGKALGE 545



 Score = 85.9 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 78/227 (34%), Gaps = 27/227 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R +++    V++ A+G+ +V +G+T +L TA      +  V  +     +       G +
Sbjct: 14  RPLTIETGRVARQADGAVMVSYGETTVLATAVGVKQAKPGVDFFPLTVNYQEKYFAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +     R+I R +R +         Q+++       +    
Sbjct: 74  P---GGFFKRE---GRPTDKETLTSRLIDRPIRPLFVKGFKNEVQVMLTVLSHDLENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              + GA  AL                     G + A   G   G  +++    E    +
Sbjct: 128 IVGMIGASAALVLSGL-------------PFMGPIGAARVGYKDGEYVINPPCDEMDDSE 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +D     T    ++ V+  +E    S++     +         +I +
Sbjct: 175 LDLVVAGTQDA-VMMVE--SEAKELSEEVMLGAVMAGHKAFQPVIDM 218


>gi|145600553|ref|YP_001164629.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
           Pestoides F]
 gi|153948233|ref|YP_001402546.1| polynucleotide phosphorylase/polyadenylase [Yersinia
           pseudotuberculosis IP 31758]
 gi|153997470|ref|ZP_02022570.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
           CA88-4125]
 gi|162418341|ref|YP_001608292.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis Angola]
 gi|165925875|ref|ZP_02221707.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936694|ref|ZP_02225261.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010063|ref|ZP_02230961.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166214313|ref|ZP_02240348.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167420765|ref|ZP_02312518.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423666|ref|ZP_02315419.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170025941|ref|YP_001722446.1| polynucleotide phosphorylase/polyadenylase [Yersinia
           pseudotuberculosis YPIII]
 gi|218930504|ref|YP_002348379.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis CO92]
 gi|229839142|ref|ZP_04459301.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229896631|ref|ZP_04511798.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
           Pestoides A]
 gi|229899706|ref|ZP_04514847.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|270489142|ref|ZP_06206216.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis KIM D27]
 gi|294505190|ref|YP_003569252.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Z176003]
 gi|123149978|sp|Q0WBF9|PNP_YERPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611335|sp|A4TQU4|PNP_YERPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611342|sp|A7FMR8|PNP_YERP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611439|sp|Q1C3L8|PNP_YERPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226704837|sp|A9R5A9|PNP_YERPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226704838|sp|B1JLX6|PNP_YERPY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|115349115|emb|CAL22078.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis CO92]
 gi|145212249|gb|ABP41656.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
           Pestoides F]
 gi|149289107|gb|EDM39187.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
           CA88-4125]
 gi|152959728|gb|ABS47189.1| polyribonucleotide nucleotidyltransferase [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351156|gb|ABX85104.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Angola]
 gi|165915343|gb|EDR33953.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922487|gb|EDR39664.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990970|gb|EDR43271.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204545|gb|EDR49025.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166961571|gb|EDR57592.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167057836|gb|EDR67582.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752475|gb|ACA69993.1| Polyribonucleotide nucleotidyltransferase [Yersinia
           pseudotuberculosis YPIII]
 gi|229687198|gb|EEO79273.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695508|gb|EEO85555.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700409|gb|EEO88441.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
           Pestoides A]
 gi|262367183|gb|ACY63740.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis D182038]
 gi|270337646|gb|EFA48423.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis KIM D27]
 gi|294355649|gb|ADE65990.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Z176003]
 gi|320016696|gb|ADW00268.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 705

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 97/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   +     GS L   G+T  L TATL           +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+  ++     I +  +
Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSASEFPYTIRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G +  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISTP 544



 Score = 66.7 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           +++   +  + A  + +V   DT +  T   +         +     +   T   G +P 
Sbjct: 16  VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR         R+I R +R +   S L   Q+I     +         
Sbjct: 75  --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +G ++ V+  +E    S++     +
Sbjct: 177 LVVAGT-AGAVLMVE--SEADILSEEQMLGAV 205


>gi|218550449|ref|YP_002384240.1| polynucleotide phosphorylase/polyadenylase [Escherichia fergusonii
           ATCC 35469]
 gi|218357990|emb|CAQ90636.1| polynucleotide phosphorylase/polyadenylase [Escherichia fergusonii
           ATCC 35469]
          Length = 734

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 452

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 499

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 559 VMEQAIN 565



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 39  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 96  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 200 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 249


>gi|85058359|ref|YP_454061.1| polynucleotide phosphorylase/polyadenylase [Sodalis glossinidius
           str. 'morsitans']
 gi|123725447|sp|Q2NW19|PNP_SODGM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|84778879|dbj|BAE73656.1| polyribonucleotide nucleotidyltransferase [Sodalis glossinidius
           str. 'morsitans']
          Length = 705

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 98/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +        +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELTGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+  ++     + +  +
Sbjct: 375 RFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPNASEFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-VTALQMDIKIEGITHEIMQVALNQAKGARMHILGV 536

Query: 234 QKDVISNE 241
            +  IS+ 
Sbjct: 537 MERAISSP 544



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 65/217 (29%), Gaps = 27/217 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
            +L   +  + A  + +    DT +  T       +     +     +   T   G  P 
Sbjct: 16  FTLETGMMARQATAAVMASMDDTAVFVTVVGAKQAKTGQSFFPLTVNYQERTYAAGRFP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR       I R+I R +R +     L    +I     +         
Sbjct: 75  --GGFFRRE---GRPSEGETLISRLIDRPIRPLFPEGFLNEVHVIATVVSVNPQVSPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E +T  +D
Sbjct: 130 AMIGASAALSLSGI-------------PFSGPIGAARVGYINDQYVLNPTQAELATSRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                T +  ++     +E    S+D     +    D
Sbjct: 177 LVVAGTQNAVLMV---ESEAQLLSEDQMLGAVVYGHD 210


>gi|83318937|emb|CAJ38806.1| polynucleotide phosphorylase protein [Platynereis dumerilii]
          Length = 628

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 90/250 (36%), Gaps = 16/250 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIR 52
           +R  GR+ N++R I+    +     GS + + G T +L T T +        + +   + 
Sbjct: 302 LRCDGRRLNEIRPINCGVDLFSPLHGSAMFQRGQTQVLCTVTFDSLDSAAKVDAITALMA 361

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
             K       Y   P +T    +      R+ G       +  +AL++V+         I
Sbjct: 362 GMKEKNFFVHYEFPPYATNETGRTGFAGRRELGHG----ALAEKALKNVIPSDF--PFTI 415

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            +  +V++++G +  A + G  +AL D                  K    +   G +  +
Sbjct: 416 RLSAEVLESNGSSSMATVCGGSLALMDAGSSKLRPKGSSLGVACGKWLTRSDDHGNVSDF 475

Query: 173 PIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
            ++ DL   ED   D+D  +  T  G +  +Q   +               A +   +++
Sbjct: 476 KVLTDLLGIEDYMGDMDFKYAGTSKG-VTALQADVKVPGLPLKVIMEAEERAWEGKTEIL 534

Query: 232 KLQKDVISNE 241
            +  + +S  
Sbjct: 535 SIMWNCLSQH 544



 Score = 84.8 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 74/217 (34%), Gaps = 23/217 (10%)

Query: 22  KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSG 81
           ++A+GS   KFG+T +L TA     V           +  +Y     + G R+    +  
Sbjct: 11  RFADGSITGKFGNTSVLVTA-----VSKGKSTNNFLPLMVDYRQKAAAAG-RIPTNHLRR 64

Query: 82  RQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD 139
             G   +E    RMI R+LR +         QI+ +   +         +I  A  AL  
Sbjct: 65  ELGPSDKETLTSRMIDRSLRPLFPSGYFVDTQIVCNLLAVDGQNDPDIVSINAASAALA- 123

Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHI 199
                              G V A+  G +    +++    E +    D      D   +
Sbjct: 124 ------------VSDIPRFGPVGAVRVGFVDNEIVINPTRREMAHSTXDLVVSAADQNKV 171

Query: 200 VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           V ++ SA+    SQ +F   +         +I   KD
Sbjct: 172 VMLEASADG--ISQPNFRHAIKRGVKESQKIITAIKD 206


>gi|15803706|ref|NP_289740.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 EDL933]
 gi|15833299|ref|NP_312072.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O157:H7 str. Sakai]
 gi|74313701|ref|YP_312120.1| polynucleotide phosphorylase/polyadenylase [Shigella sonnei Ss046]
 gi|209920641|ref|YP_002294725.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli SE11]
 gi|218696871|ref|YP_002404538.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 55989]
 gi|218701935|ref|YP_002409564.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI39]
 gi|260845979|ref|YP_003223757.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O103:H2 str. 12009]
 gi|291284540|ref|YP_003501358.1| Polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
           str. CB9615]
 gi|293416598|ref|ZP_06659237.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B185]
 gi|300817584|ref|ZP_07097800.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           107-1]
 gi|300823873|ref|ZP_07103997.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           119-7]
 gi|300904350|ref|ZP_07122203.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           84-1]
 gi|300926097|ref|ZP_07141915.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           182-1]
 gi|300938074|ref|ZP_07152852.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           21-1]
 gi|301301780|ref|ZP_07207914.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           124-1]
 gi|301326413|ref|ZP_07219767.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           78-1]
 gi|331669993|ref|ZP_08370838.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA271]
 gi|331679245|ref|ZP_08379917.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H591]
 gi|12517775|gb|AAG58300.1|AE005545_2 polynucleotide phosphorylase; cytidylate kinase activity
           [Escherichia coli O157:H7 str. EDL933]
 gi|13363518|dbj|BAB37468.1| polynucleotide phosphorylase [Escherichia coli O157:H7 str. Sakai]
 gi|73857178|gb|AAZ89885.1| polynucleotide phosphorylase [Shigella sonnei Ss046]
 gi|209758378|gb|ACI77501.1| polynucleotide phosphorylase [Escherichia coli]
 gi|209758380|gb|ACI77502.1| polynucleotide phosphorylase [Escherichia coli]
 gi|209758382|gb|ACI77503.1| polynucleotide phosphorylase [Escherichia coli]
 gi|209758384|gb|ACI77504.1| polynucleotide phosphorylase [Escherichia coli]
 gi|209758386|gb|ACI77505.1| polynucleotide phosphorylase [Escherichia coli]
 gi|209913900|dbj|BAG78974.1| polynucleotide phosphorylase [Escherichia coli SE11]
 gi|218353603|emb|CAU99791.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 55989]
 gi|218371921|emb|CAR19777.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI39]
 gi|257761126|dbj|BAI32623.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O103:H2 str. 12009]
 gi|290764413|gb|ADD58374.1| Polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
           str. CB9615]
 gi|291431954|gb|EFF04937.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B185]
 gi|300403701|gb|EFJ87239.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           84-1]
 gi|300417862|gb|EFK01173.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           182-1]
 gi|300456934|gb|EFK20427.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           21-1]
 gi|300523641|gb|EFK44710.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           119-7]
 gi|300529882|gb|EFK50944.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           107-1]
 gi|300842761|gb|EFK70521.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           124-1]
 gi|300846902|gb|EFK74662.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           78-1]
 gi|315257090|gb|EFU37058.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           85-1]
 gi|324018312|gb|EGB87531.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           117-3]
 gi|331062906|gb|EGI34820.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA271]
 gi|331073310|gb|EGI44633.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H591]
          Length = 734

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 452

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 499

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 559 VMEQAIN 565



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 39  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 96  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 200 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 249


>gi|300948813|ref|ZP_07162881.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           116-1]
 gi|300451702|gb|EFK15322.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           116-1]
          Length = 734

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 452

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 499

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 559 VMEQAIN 565



 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 39  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 96  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 200 LVVAGTEAAVLMV---ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 249


>gi|261253862|ref|ZP_05946435.1| polyribonucleotide nucleotidyltransferase [Vibrio orientalis CIP
           102891]
 gi|260937253|gb|EEX93242.1| polyribonucleotide nucleotidyltransferase [Vibrio orientalis CIP
           102891]
          Length = 710

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  + TATL  +        +   +  
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGTQRDAQIIDELTGERKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R + +V+         + +  +
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   +    +++     LN A+     ++ +
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNDG-ITALQMDIKIEGITKEIMQIALNQAQGARKHILSV 537

Query: 234 QKDVISN 240
             + IS 
Sbjct: 538 MDEAISG 544



 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 72/212 (33%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +V   DT +  +   +    E    +     +   T   G +P 
Sbjct: 17  VTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVEGQDFFPLTVNYQERTYAAGKIP- 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +   +     Q+I     +  D      
Sbjct: 76  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMSVNPDVQPDMV 130

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + A   G + G  +++    E +T  +D
Sbjct: 131 TMIGTSAALAISGI-------------PFNGPIGAARVGHIDGQLVLNPSNTELATSKLD 177

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T+ G ++ V+  +E    +++   + +
Sbjct: 178 LVVAGTE-GAVLMVE--SEADNLTEEEMLSAV 206


>gi|26249747|ref|NP_755787.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           CFT073]
 gi|91212585|ref|YP_542571.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli UTI89]
 gi|26110175|gb|AAN82361.1|AE016767_121 Polyribonucleotide nucleotidyltransferase [Escherichia coli CFT073]
 gi|91074159|gb|ABE09040.1| polyribonucleotide nucleotidyltransferase [Escherichia coli UTI89]
          Length = 740

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 344 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 403

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 404 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 458

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 459 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 505

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 506 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 564

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 565 VMEQAIN 571



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 45  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 101

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 102 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 158

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 159 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 205

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 206 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 255


>gi|290473451|ref|YP_003466318.1| polynucleotide phosphorylase, has polyadenylase activity
           [Xenorhabdus bovienii SS-2004]
 gi|289172751|emb|CBJ79522.1| polynucleotide phosphorylase, has polyadenylase activity
           [Xenorhabdus bovienii SS-2004]
          Length = 714

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 97/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L  ATL  +    V   +   +  
Sbjct: 319 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVAATLGTERDAQVIDELMGERAD 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+  +      I +  +
Sbjct: 379 RFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPTANEFPYTIRVVSE 434

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 435 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 481

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    + +     LN AK     ++ +
Sbjct: 482 LSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITSEIMQVALNQAKGARLHILGV 540

Query: 234 QKDVISNE 241
            +  I + 
Sbjct: 541 MEQAIQSP 548



 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 71/212 (33%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           +++   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTIETGMMARQATAAVMVNMDDTAVFVTVVGQKK---MKAGQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR G     + R+I R LR +     L   QII     +         
Sbjct: 73  IPGSFFRRE---GRPGEGETLVARLIDRPLRPLFPEGFLNEVQIIATVVSVNPLVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALALSGI-------------PFNGPIGAARVGYINDQYVLNPTSDELKNSRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +G ++ V+  AE    +++     +
Sbjct: 177 LVVAGT-AGAVLMVESEAE--LLTEEQMLGAV 205


>gi|16766580|ref|NP_462195.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56415214|ref|YP_152289.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364144|ref|YP_002143781.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|205354186|ref|YP_002227987.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858532|ref|YP_002245183.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|81361497|sp|Q5PL97|PNP_SALPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81521548|sp|Q8ZLT3|PNP_SALTY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611314|sp|A9N728|PNP_SALPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611318|sp|Q57JI3|PNP_SALCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702684|sp|B5QZV4|PNP_SALEP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702685|sp|B5REN2|PNP_SALG2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702686|sp|B5BGJ1|PNP_SALPK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096718|sp|C0PZ50|PNP_SALPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|16421841|gb|AAL22154.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56129471|gb|AAV78977.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197095621|emb|CAR61189.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|205273967|emb|CAR38972.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206710335|emb|CAR34693.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|267995478|gb|ACY90363.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159832|emb|CBW19351.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|332990140|gb|AEF09123.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 711

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 536 VMEQAIN 542



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 75/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I  +  L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEA 226


>gi|326803908|ref|YP_004321726.1| polyribonucleotide nucleotidyltransferase [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651013|gb|AEA01196.1| polyribonucleotide nucleotidyltransferase [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 706

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 89/243 (36%), Gaps = 29/243 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT-ATLEEKVPM-WIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T +L   T A L E  P+  I     
Sbjct: 319 VRPDGRKIDEIRPLSSEVGLLPRVHGSGLFTRGQTQVLSACTLAPLSEYQPLDGISPETE 378

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +     G  G R      +  RAL+ V+         I +  
Sbjct: 379 RHFIHHYNFPQYSVGSTGR----YGSPGRREIGHGELGHRALQRVIPSQEEFPYTIRLVA 434

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 435 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLIMDQEDNN 481

Query: 173 ---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED   D+D     T  G I  +Q   +    ++D     L  AK     
Sbjct: 482 KYTILTDIQGLEDHLGDMDFKVAGTRQG-ITALQMDIKIKGITEDILRESLAQAKVARMQ 540

Query: 230 LIK 232
           L+ 
Sbjct: 541 LLD 543



 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 88/238 (36%), Gaps = 30/238 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R + +    ++K A  + LV++GDT +LT        +E    +     +       G +
Sbjct: 14  RPLQIEVGQLAKQANAAALVRYGDTVVLTAVVGAKEAKEGQDFFPLTVNYEEKQYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR    +    R+I R +R +         Q+I     +  D    
Sbjct: 74  P---GGFIKRE---GRPTEHATLTARLIDRPIRPMFPEGFKNEVQVINTVMSVDNDCSPE 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ G+ VAL                     G +A ++ G + G  +++    + +  D
Sbjct: 128 MAAMLGSSVAL-------------TISDIPFDGPIAGVNVGRVDGNLVINPTLDQQAQSD 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ---KDVISNE 241
           ++     T +  I  V+ SA+    S++     L      I +L   Q   +  +  E
Sbjct: 175 LELTVAGTQTA-INMVESSAQE--LSEEEMLEALMFGHANIKELCYFQEEIRQAVGQE 229


>gi|254477352|ref|ZP_05090738.1| 3' exoribonuclease family, domain 2, protein [Ruegeria sp. R11]
 gi|214031595|gb|EEB72430.1| 3' exoribonuclease family, domain 2, protein [Ruegeria sp. R11]
          Length = 705

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 91/243 (37%), Gaps = 17/243 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R+I     +     GS L   G+T  L   TL         +  HG   +
Sbjct: 310 RIDGRDTTTVRQIVSETGMLPRTHGSALFTRGETQALAVTTLGTGDDEQFIDALHGNFKS 369

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+         I +  +
Sbjct: 370 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSE 425

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +++ D    ++       +  +L+      S  +     + D+
Sbjct: 426 ITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILED---DGSYAI-----LSDI 477

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   + A  + +     L  AKD    ++      
Sbjct: 478 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKALAQAKDGRMHILGEMSKA 536

Query: 238 ISN 240
           +S 
Sbjct: 537 LSE 539



 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 80/234 (34%), Gaps = 39/234 (16%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+G+ +   G+T ++   T     +     +     +       G +P 
Sbjct: 8   LTLETGKVARQADGTVIATLGETSVMANVTFAKEQKPGQDFFPLTVHYQEKYYAAGKVP- 66

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++ C V+  D      
Sbjct: 67  --GGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 119

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                     G +A    G   G  +++     D   D
Sbjct: 120 IVAMIAASAALTISGA-------------PFMGPIAGARVGFTDGEYVLNPTV--DDMQD 164

Query: 187 VDAN-------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +  N        V      ++ V+  +E    ++      +N A ++I  +I L
Sbjct: 165 LRLNPEQRLDLVVAGTKNAVMMVE--SEAYELTEAEMLGAVNFAHEQIQPVIDL 216


>gi|319900855|ref|YP_004160583.1| polyribonucleotide nucleotidyltransferase [Bacteroides helcogenes P
           36-108]
 gi|319415886|gb|ADV42997.1| polyribonucleotide nucleotidyltransferase [Bacteroides helcogenes P
           36-108]
          Length = 735

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 84/235 (35%), Gaps = 30/235 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           RL GR+  ++R I           GS +   G+T  L+T TL  K+   I +        
Sbjct: 319 RLDGRKTTEIRPIWCETSYLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDDVLEHGKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +         + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYVVRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVK-------------IKKPVSGIAMGLIKNAGEAKY 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             + D+   ED   D+D     T  G I   Q   +    + D     L  AK+ 
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTKDG-ITATQMDIKCDGLTYDILEKALLQAKEG 533



 Score = 88.2 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 90/242 (37%), Gaps = 28/242 (11%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       I+L      K A+GS +++ G+T LL T    ++ VP            
Sbjct: 12  PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYK 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            ++    R  G   KRE   GR         R++ RALR +   +     ++ ++  +  
Sbjct: 66  EKFSAFGRFPGGFTKRE---GRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNIILFS 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           V + D L  +   +          G ++ +    +    +++  + 
Sbjct: 121 ADG-----------VDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDNQFVINPTFE 169

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +    D+D     T   +I+ V+G  E +  S+      +  A + I    K Q + ++ 
Sbjct: 170 QLEKADMDLMVGATYE-NIMMVEG--EMSEVSEQDLLEAMKAAHEAIKIQCKAQME-LAE 225

Query: 241 EV 242
           EV
Sbjct: 226 EV 227


>gi|108804255|ref|YP_644192.1| polynucleotide phosphorylase/polyadenylase [Rubrobacter
           xylanophilus DSM 9941]
 gi|123069114|sp|Q1AW48|PNP_RUBXD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|108765498|gb|ABG04380.1| Polyribonucleotide nucleotidyltransferase [Rubrobacter xylanophilus
           DSM 9941]
          Length = 686

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 94/249 (37%), Gaps = 28/249 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56
           R   R  +++R  +    V     G+ L   G+T +L++  L +     ++      T  
Sbjct: 307 RTDLRAFDEIRPTTAEAHVLPRVHGTGLFTRGETQVLSSLALADLGLVQRLDTLEPQTTK 366

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++   Y   P STG   +      R+ G       +  RAL  V+         I I  
Sbjct: 367 RYMH-HYYFPPYSTGETGRLGPPRRREIGHG----ALAERALLPVIPSEEEFPYAIRIIS 421

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A++ G+ +AL D                 +K  VA ++ G++       
Sbjct: 422 EVLESNGSSSMASVCGSTLALMD-------------GGVPIKAPVAGVAMGLVKEGDDYV 468

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S +     L  A+     ++ 
Sbjct: 469 ILTDIQGLEDHMGDMDFKVAGTRDG-ITALQMDMKITGVSAELLKEALEQARRGRLQILD 527

Query: 233 LQKDVISNE 241
           + ++ I+  
Sbjct: 528 IMREEIAEP 536



 Score = 79.4 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 80/231 (34%), Gaps = 26/231 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWITAEYGMLPRS 69
           R I L      + A G+   +FGDT +L+TAT  EE  P          I        + 
Sbjct: 10  RAIVLETGKLARQAGGAVTARFGDTTVLSTATRSEEPRPGATFLPLSVDIEERMSSAGKI 69

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KRE   G+   ++    R+  R +R +         Q+I    V   +      +
Sbjct: 70  PGGFLKRE---GKPSEKAILTARLTDRPIRPLFPKDYYYEVQVIGTVLVADQENPYDVVS 126

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYGEDSTIDVD 188
           + GA  AL                     G + A+  G    G  I++  Y +    D+D
Sbjct: 127 MVGASAALA-------------LSDIPFGGPIGAVRVGRHPDGGFILNPTYQQLEESDLD 173

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                T    I  V+  A     ++D     L +A+  I +    Q + I 
Sbjct: 174 IVVAGTKEA-ITMVEAGARE--VTEDVVVEALEVAQGVIRE----QAEAIE 217


>gi|261248448|emb|CBG26285.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
          Length = 711

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 536 VMEQAIN 542



 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 75/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I  +  L K+ 
Sbjct: 177 LVAAGTEAAVLMV---ESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEA 226


>gi|218679365|ref|ZP_03527262.1| ribonuclease PH [Rhizobium etli CIAT 894]
          Length = 71

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/69 (49%), Positives = 51/69 (73%)

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
            P++DLDY EDS+ + DANFVMT +G IVE+QG+AE   F+++ F +++ LAK+ I +L+
Sbjct: 3   QPVIDLDYLEDSSAETDANFVMTGAGGIVEIQGTAEGTPFTEEEFSSLMGLAKNGIGELV 62

Query: 232 KLQKDVISN 240
            LQK  I+ 
Sbjct: 63  ALQKQAIAG 71


>gi|88812956|ref|ZP_01128199.1| Polyribonucleotide nucleotidyltransferase [Nitrococcus mobilis
           Nb-231]
 gi|88789734|gb|EAR20858.1| Polyribonucleotide nucleotidyltransferase [Nitrococcus mobilis
           Nb-231]
          Length = 700

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 86/248 (34%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R IS+         GS +   G+T  +   TL       I +   G    
Sbjct: 317 RIDGRDNKTVRPISIEVATLPRTHGSAIFTRGETQAIVVTTLGTGRDAQIIDAIEGERKE 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G          R+ G      R+  R +++V+         I +  +
Sbjct: 377 PFMLHYNFPPYSVGETGFMGVPKRREIGHG----RLAKRGIQAVMPSQEECPYVIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A + G  +AL D                 +K  VA I+ G++        
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGV-------------PIKAPVAGIAMGLIKEESEFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G +  +Q   +    ++      L  A+     ++  
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTEEG-VTALQMDIKINGITRQIMEVALEQARTGRLHILSK 538

Query: 234 QKDVISNE 241
              VI+  
Sbjct: 539 MNAVIAKP 546



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 79/235 (33%), Gaps = 32/235 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGWITAEYGMLPRST 70
           ++L    +++ A G+ +V   DT +L T     ++  P          +T  Y     + 
Sbjct: 15  VTLETGRIARQASGAVMVNMSDTVVLVTVVGKKDQGEPR-----DFLPLTVNYQERTYAA 69

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G       KRE   GR   +   + R+I R +R +         QI+     +  +    
Sbjct: 70  GKIPGGFFKRE---GRPSEKETLVSRLIDRPVRPLFPAGFTNEVQIVATVISMNNEVDAD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                       + A   G   G  +++  + +  + D
Sbjct: 127 IPAMIGASAALAVSGI-------------PFDSPLGAGRVGYHKGAFVLNPTFSQLESSD 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           +D     T    ++     +E    S+      +    +++  +I    + ++ E
Sbjct: 174 LDLVVAGTADAVLMV---ESEANCLSEQTMLDAVIFGHEQMQTVIAAINE-LAQE 224


>gi|113969375|ref|YP_733168.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. MR-4]
 gi|123130662|sp|Q0HLF6|PNP_SHESM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|113884059|gb|ABI38111.1| Polyribonucleotide nucleotidyltransferase [Shewanella sp. MR-4]
          Length = 699

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 93/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+ + +R +S+   V     GS L   G+T  L T TL  +        I   +  
Sbjct: 314 RIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      ++  R + +V+  +      + +  +
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPSAEEFPYSVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ G  +AL D                 +K  VA I+ G++     + +
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDNFVV 476

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A      ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-VTALQMDIKIEGITKEIMEIALQQAYGARVHILNV 535

Query: 234 QKDVISNE 241
               I + 
Sbjct: 536 MDQAIGSH 543



 Score = 71.7 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 66/208 (31%), Gaps = 27/208 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A+ + L   GDT +L T       E     +     +   T   G +P 
Sbjct: 15  VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+II    +         
Sbjct: 74  --GGFFKRE---GRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVDPQIEPDII 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++         +  
Sbjct: 129 SMIGTSAALAISGI-------------PFSGPLGAARVGYINGEYVLNPTVT--QLANSQ 173

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHF 216
            N V+  +   V +  S E     ++  
Sbjct: 174 LNLVVAGTEGAVLMVES-EAQALPEEVM 200


>gi|16762047|ref|NP_457664.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29143536|ref|NP_806878.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|81512815|sp|Q8Z3I0|PNP_SALTI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|25311835|pir||AD0901 polynucleotide phosphorylase [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16504350|emb|CAD07802.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139170|gb|AAO70738.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 711

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 536 VMEQAIN 542



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 75/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I  +  L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEA 226


>gi|220909628|ref|YP_002484939.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC
           7425]
 gi|254782716|sp|B8HXN3|PNP_CYAP4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219866239|gb|ACL46578.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7425]
          Length = 715

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 89/246 (36%), Gaps = 19/246 (7%)

Query: 1   MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTK 55
           +R+ GR+ +++R IS    V  +   GS L   G T +L+  TL           +   +
Sbjct: 322 VRVDGRKLDEVRPISCLVGVLPRRVHGSALFNRGLTQVLSAVTLGTPGDAQELDDLHPDE 381

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P S G      +   R+ G       +  RAL  V+         I + 
Sbjct: 382 SKRYLHHYNFPPFSVGETRPMRSPGRREIGHG----ALAERALVPVLPPQDQFPYVIRVV 437

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            +V+ ++G T   ++ G+ ++L D    +    +   +  + +G              + 
Sbjct: 438 SEVLSSNGSTSMGSVCGSTLSLMDAGVPLTKPVSGAAMGLIKEGDEV---------RILT 488

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     TDSG I  +Q   +    S       +  AK     +++   
Sbjct: 489 DIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLSLQVVAEAIQQAKPARMHILEKML 547

Query: 236 DVISNE 241
           + +S  
Sbjct: 548 ETLSQP 553



 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 95/233 (40%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           R+I +T    +  A G+ +++ GDT +L TAT     E +        +       G +P
Sbjct: 13  RDIHITIGRFAPQAGGTVMIRSGDTAVLVTATRAAAREGIDFLPLLVDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   GR   ++  I R+I R LR +         Q++     +        
Sbjct: 73  ---GGFLRRE---GRPPEKATLISRLIDRPLRPLFPGWLRDDIQVVATTLSMDEQVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA VA+                     G +AA+  G++    I++  Y E    D+
Sbjct: 127 LAVTGASVAVLLAQI-------------PFNGPMAAVRVGLVGDDFIINPTYSEIEAGDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     + +G +V V+  A +    +      ++   + + DLI+ Q+++++ 
Sbjct: 174 DLVVAGSPAG-VVMVEAGANQ--LPEQDVIEAIDFGYEAVRDLIRAQQELLTE 223


>gi|152972088|ref|YP_001337234.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238896671|ref|YP_002921416.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|187610278|sp|A6TEI3|PNP_KLEP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|150956937|gb|ABR78967.1| polynucleotide phosphorylase, has polyadenylase activity
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|238548998|dbj|BAH65349.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 711

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 96/246 (39%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPTIEEFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PVKAAVAGIAMGLVKEGDNFVV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 536

Query: 234 QKDVIS 239
            +  I+
Sbjct: 537 MEQAIN 542



 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGK 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGGFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E  +  +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQEELKSSKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++  L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEA 226


>gi|42526551|ref|NP_971649.1| polynucleotide phosphorylase/polyadenylase [Treponema denticola
           ATCC 35405]
 gi|81412546|sp|Q73NW1|PNP_TREDE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|41816744|gb|AAS11530.1| polyribonucleotide nucleotidyltransferase [Treponema denticola ATCC
           35405]
          Length = 698

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 89/248 (35%), Gaps = 28/248 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR    +R I+    V     GS +   G+T  L   T+    +E++   I   + 
Sbjct: 313 LRVDGRGTKDIRPITCEIGVLPRPHGSAVFTRGETQSLGVVTIGTVFDEQIYDDIEGDRR 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G  V R     R+ G       +  R+L  +V         + +  
Sbjct: 373 ENFILHYNFPPFSVGE-VGRLGTGRREIGHG----NLAHRSLYPMVPEREKFPYTVRVVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171
           +V++++G +  A +    +++      M             K  VA I+ G++       
Sbjct: 428 EVLESNGSSSMATVCSGTLSMLHAGVPM-------------KKPVAGIAMGLITEGNDRY 474

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   + A  S +     L  AK+    ++
Sbjct: 475 AILSDILGEEDHLGDMDFKVAGTADG-ITGFQMDIKIAGVSPEIMKNALAQAKEGRMHIL 533

Query: 232 KLQKDVIS 239
            +    IS
Sbjct: 534 GIMNQCIS 541



 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 81/226 (35%), Gaps = 27/226 (11%)

Query: 16  LTRRVS-KYAEGSCLVKFGDTHLLTT--ATLE--EKVPMWIRNTKHGWITAEYGMLPRST 70
           L      K A GS   ++  + +L T  A+ +  E +        +       G +P   
Sbjct: 16  LETGYLAKQANGSIYAEYAGSAILATICASGQAQEGLDYVPLTVDYNEKYYAAGKIP--- 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G  +KRE   GR   +   + R+I R +R + +       Q++  C            A+
Sbjct: 73  GGFIKRE---GRPKDKEILVSRLIDRPMRPLFNKEFGREIQLVPTCISTDMINPPDILAV 129

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
             +  A+H                    G VAA       G  I++  + +  T D++  
Sbjct: 130 IASSAAVH-------------ISDIPFDGPVAAARVAYKNGEYIINPTFSQIETADMEIV 176

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              T  G I  V+G A     S++     L  A + I  L K+Q+D
Sbjct: 177 VAGTKEG-ITMVEGGANE--VSEEVMLTALEKAHEMIKSLCKMQED 219


>gi|51594836|ref|YP_069027.1| polynucleotide phosphorylase/polyadenylase [Yersinia
           pseudotuberculosis IP 32953]
 gi|186893845|ref|YP_001870957.1| polynucleotide phosphorylase/polyadenylase [Yersinia
           pseudotuberculosis PB1/+]
 gi|81640532|sp|Q66F56|PNP_YERPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226704836|sp|B2K2Q9|PNP_YERPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|51588118|emb|CAH19724.1| polyribonucleotide nucleotidyltransferase [Yersinia
           pseudotuberculosis IP 32953]
 gi|186696871|gb|ACC87500.1| 3' exoribonuclease [Yersinia pseudotuberculosis PB1/+]
          Length = 704

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 97/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   +     GS L   G+T  L TATL           +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+  ++     I +  +
Sbjct: 375 SFLLHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPSASEFPYTIRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G +  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILGV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISTP 544



 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           +++   +  + A  + +V   DT +  T   +         +     +   T   G +P 
Sbjct: 16  VTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR         R+I R +R +   S L   Q+I     +         
Sbjct: 75  --GSFFRRE---GRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 ALIGASAALSLSGI-------------PFNGPIGAARVGFINDQYVLNPTTDELKESRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +G ++ V+  +E    S++     +
Sbjct: 177 LVVAGT-AGAVLMVE--SEADILSEEQMLGAV 205


>gi|332280005|ref|ZP_08392418.1| polyribonucleotide nucleotidyltransferase [Shigella sp. D9]
 gi|332102357|gb|EGJ05703.1| polyribonucleotide nucleotidyltransferase [Shigella sp. D9]
          Length = 740

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 344 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 403

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 404 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 458

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 459 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 505

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 506 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 564

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 565 VMEQAIN 571



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 45  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 101

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 102 IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 158

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 159 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 205

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 206 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 255


>gi|297180703|gb|ADI16912.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [uncultured gamma proteobacterium
           HF0010_16J05]
          Length = 718

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 91/246 (36%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L  ATL    +  +   +  +   
Sbjct: 332 RIDGRDLRTVRPIEVEVGVLPKAHGSALFTRGETQALVVATLGTLRDAALIDALEGSYKD 391

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G          R+ G      ++  R + + +  S      + +  +
Sbjct: 392 TFMLHYNFPPYSVGEAGFMSGPKRREIGHG----KLARRGVSATLPNSEDFPYTVRVVSE 447

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA ++ G++        
Sbjct: 448 ITESNGSSSMASVCGTSLALMDAGV-------------PVKAPVAGVAMGLVKEGNRYAV 494

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    +++   A L  A +    ++  
Sbjct: 495 LTDILGDEDHLGDMDFKVAGTATG-VTALQMDIKIDGITEEIMEAALAQAFEARVHILGE 553

Query: 234 QKDVIS 239
              VIS
Sbjct: 554 MNKVIS 559



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 83/235 (35%), Gaps = 28/235 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++++    ++K A GS +V  GDT +LTT             +     +   T   G +P
Sbjct: 31  QVTIETNKIAKQATGSVVVTIGDTVVLTTVVGAKSARPGQDFFPLTVNYQEKTYAAGKIP 90

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR   +     R+I R +R +     +   QI+        +     
Sbjct: 91  ---GGFFRRE---GRPSEKETLTSRLIDRPIRPLFPKGFMNEVQIVCTVVSTDKNQDPDI 144

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G   AL                     G + A   G + G  +++  Y    T ++
Sbjct: 145 AAMIGTSAALAISGI-------------PFDGPIGAARVGYVDGQYLLNPGYDVLETSEL 191

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           +     T S  ++     +E    S+D     +  A   +  +I    + ++ E+
Sbjct: 192 NMTVAGTASAVLMV---ESEAKELSEDQMLGAVLFAHQEMQAIITAVAE-LAGEI 242


>gi|24372791|ref|NP_716833.1| polynucleotide phosphorylase/polyadenylase [Shewanella oneidensis
           MR-1]
 gi|24346879|gb|AAN54278.1|AE015565_1 polyribonucleotide nucleotidyltransferase [Shewanella oneidensis
           MR-1]
          Length = 702

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 91/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+ + +R +S+   V     GS L   G+T  L T TL  +        I   +  
Sbjct: 317 RIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      ++  R + +V+  +      + +  +
Sbjct: 377 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPSAEEFPYSVRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A      ++ +
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTRDG-VTALQMDIKIEGITKEIMEIALQQAYGARVHILNV 538

Query: 234 QKDVISNE 241
               I + 
Sbjct: 539 MDQAIGSH 546



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 67/206 (32%), Gaps = 27/206 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A+ + L   GDT +L T       E     +     +   T   G +P 
Sbjct: 18  VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+II    +  +      
Sbjct: 77  --GGFFKRE---GRPSEEETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEIEPDII 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++    +     ++
Sbjct: 132 SMIGTSAALAISGI-------------PFNGPLGAARVGYINGEYVLNPTVKQIGASQLN 178

Query: 189 ANFVMTDSGHIV---EVQGSAERATF 211
                T+S  ++   E Q   E    
Sbjct: 179 LVVAGTESAVLMVESEAQALPEEVML 204


>gi|239833218|ref|ZP_04681547.1| Polyribonucleotide nucleotidyltransferase [Ochrobactrum intermedium
           LMG 3301]
 gi|239825485|gb|EEQ97053.1| Polyribonucleotide nucleotidyltransferase [Ochrobactrum intermedium
           LMG 3301]
          Length = 714

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I     +     GS L   G+T  +  ATL       + +   G    
Sbjct: 317 RIDGRDLKTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKQ 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++  +      I    +
Sbjct: 377 PFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPSAEQFPYTIRAVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  + +G   A+         + D+
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAV---------LSDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   +    +++     L  AK     ++      
Sbjct: 484 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKA 542

Query: 238 ISN 240
           +S 
Sbjct: 543 LST 545



 Score = 76.7 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 74/227 (32%), Gaps = 27/227 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R ++L    +++ A+G+ L  +G+T +L T       +     +     +   T   G +
Sbjct: 14  RPLTLETGKIARQADGAVLATYGETVVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR       + R+I R +R +         Q+++       +    
Sbjct: 74  P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVVTVVQHDLENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             ++  A  AL                     G +     G + G  +++ +  E     
Sbjct: 128 VLSMVAASAAL-------------TISGVPFMGPIGGARVGYINGEYVLNPNIDEMPESK 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +D     T    ++     +E    S++     +   +     +I  
Sbjct: 175 LDLVVAGTSEAVLMV---ESEAQELSEEIMLGAVVFGQKGFQPVIDA 218


>gi|90581545|ref|ZP_01237338.1| polyribonucleotide nucleotidyltransferase [Vibrio angustum S14]
 gi|90437307|gb|EAS62505.1| polyribonucleotide nucleotidyltransferase [Vibrio angustum S14]
          Length = 708

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 95/248 (38%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL  +    I +   G    
Sbjct: 314 RIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDGLTGETKD 373

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R + +V+         + +  +
Sbjct: 374 HFLLHYNFPPYCVGETGFVGSPKRREIGHG----KLAKRGIAAVMPSVDEFPYTVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDDFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     TD G I  +Q   +    +++     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTDDG-ITALQMDIKIEGITKEIMQIALNQAKGARKHILSV 535

Query: 234 QKDVISNE 241
             + I+  
Sbjct: 536 MDNAINTP 543



 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 62/212 (29%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + +V   DT +  +   +    E    +     +   T   G +P 
Sbjct: 15  VTLETGVMARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +         Q+I     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVNPAVSPDIV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + G   AL                     G + A   G +    +++    E     +D
Sbjct: 129 TMIGTSAALAISGI-------------PFNGPIGAARVGYINDQFVLNPSNVELEESRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T    ++     +E    S++     +
Sbjct: 176 LVVAGTKDAVLMV---ESEADRLSEEQMLQAV 204


>gi|315617247|gb|EFU97856.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3431]
          Length = 690

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 294 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 353

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 354 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 408

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 409 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 455

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 456 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 514

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 515 VMEQAIN 521



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 73/224 (32%), Gaps = 30/224 (13%)

Query: 22  KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVKRE 77
           + A  + +V   DT +  T   ++K            +T  Y     + G    +  +RE
Sbjct: 4   RQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGRIPGSFFRRE 60

Query: 78  AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137
              GR       I R+I R +R +     +   Q+I     +         A+ GA  AL
Sbjct: 61  ---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAAL 117

Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197
                                G + A   G +    +++    E     +D     T++ 
Sbjct: 118 SLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA 164

Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
            ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 165 VLMV---ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 205


>gi|161506151|ref|YP_001573263.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867498|gb|ABX24121.1| hypothetical protein SARI_04342 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 721

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 325 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 384

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 385 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 439

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 440 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 486

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 487 VLSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 545

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 546 VMEQAIN 552



 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 75/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 26  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 82

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 83  IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 139

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 140 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 186

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I  +  L K+ 
Sbjct: 187 LVVAGTEAAVLMV---ESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEA 236


>gi|326914227|ref|XP_003203428.1| PREDICTED: exosome complex exonuclease RRP43-like [Meleagris
           gallopavo]
          Length = 291

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 90/257 (35%), Gaps = 25/257 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P  + +   G+I  
Sbjct: 38  RPDGRELGEFRATTVNIGSITTADGSALVKLGNTTVICGVKAELAAPA-VDSANKGYIVP 96

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115
               LP     R +    SG  G  +Q   + I   +    ++    L    G    ++ 
Sbjct: 97  NVE-LPSLCSTRFR----SGPPGEEAQAASQFIADVIENSQIIAKEDLCIAEGKLAWVLY 151

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
           CD+  +  DG    A+      AL +             + + + K +   V++ H  A 
Sbjct: 152 CDIICLDYDGNILDASTFALLAALKNVQLPSVTINEETGLSEVNLKQKNPLVIRKHPVAT 211

Query: 165 SCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           S  +      IVD    E+         V  +   +  V      +  +       ++ A
Sbjct: 212 SFAIFDDXLLIVDPTAEEEDLATGTVTVVTDEDDRLCSVHKPG-GSPLTGAKLQDCISRA 270

Query: 224 KDRIADLIKLQKDVISN 240
             R  ++ KL   VI +
Sbjct: 271 ITRHKEVKKLIDKVIKS 287


>gi|255087891|ref|XP_002505868.1| predicted protein [Micromonas sp. RCC299]
 gi|226521139|gb|ACO67126.1| predicted protein [Micromonas sp. RCC299]
          Length = 791

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 93/255 (36%), Gaps = 33/255 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR   ++R++     V     GS + + G+T  L T T+ + +            + 
Sbjct: 360 RVDGRGIRELRQLGAESNVLPVVHGSSIFERGNTQALATVTIGKLIDAQKLDAPVGPDNR 419

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +   Y     S     +R  +S R+ G       +  ++L  ++  +      + I+ +
Sbjct: 420 RMMLHYSFPSFSINETPRRGGLSRREIGHG----ALAEKSLAGIIPAAKEWPFAVRINAE 475

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
            ++++G +  AA+    +AL D                 +K HV AIS G++        
Sbjct: 476 TMESNGSSSMAAVCSGSLALMDAGV-------------PIKEHVGAISVGLVMDEDEQTG 522

Query: 172 -----YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                  + D+   ED   D+D     T  G I  +Q   + A    D     +++A   
Sbjct: 523 KVTRYELLSDIMGLEDVLGDMDFKIAGT-RGGITGIQLDCKPAGIPLDILIEAMDVASIA 581

Query: 227 IADLIKLQKDVISNE 241
            + +I      IS  
Sbjct: 582 RSAVIDEMDRAISKP 596



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 74/234 (31%), Gaps = 30/234 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLP 67
            +      V++  +G+ +   GD+ ++  A            +     +    + +G +P
Sbjct: 50  RVGFETGRVARLTDGAIVASMGDSRVICAAVCSRDENPDAGFFPLQVDYRERHSAFGKIP 109

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
                  +RE   G    R     R++ RA+R +   S      +               
Sbjct: 110 ---PTFTRRE---GAPKDREVLAMRVVDRAIRPLFPKSFSRDTSVQAIVLATDQSQDPAV 163

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGYPIVDLDYGEDSTI 185
            A+ GA  AL                S    G V A+   +L      I++    +D   
Sbjct: 164 LAVNGASAALS-------------VSSIPWNGPVGAVRVSVLGDGNEIILNPS-DKDVEA 209

Query: 186 DVDANFVMTDSGH--IVEVQ-GSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                F   +     ++E Q G+A+     +    + L  A +    LI+ Q+ 
Sbjct: 210 SKLTLFYAGNENRTLMIEAQAGTADEGGVPESVVASALRAAHEAAKVLIEPQRR 263


>gi|309785491|ref|ZP_07680122.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
           1617]
 gi|187611311|sp|Q32BG9|PNP_SHIDS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|308926611|gb|EFP72087.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
           1617]
          Length = 711

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 375 TFLFHYNFPPYSVGETGIVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 536 VMEQAIN 542



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226


>gi|170727889|ref|YP_001761915.1| polynucleotide phosphorylase/polyadenylase [Shewanella woodyi ATCC
           51908]
 gi|226702688|sp|B1KRQ5|PNP_SHEWM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169813236|gb|ACA87820.1| Polyribonucleotide nucleotidyltransferase [Shewanella woodyi ATCC
           51908]
          Length = 702

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 93/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+ + +R +++   V     GS L   G+T  L T TL  +      ++  G  T 
Sbjct: 314 RIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKVDSIMGEYTN 373

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      ++  R + +V+  +      + +  +
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPTAEEFPYSVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     L  A      ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMQIALQQAYGARVHILNV 535

Query: 234 QKDVISNE 241
               IS  
Sbjct: 536 MDQAISGH 543



 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 72/208 (34%), Gaps = 27/208 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEE----KVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A  + L   GDT +L T   ++        +     +   T   G +P 
Sbjct: 15  VTLETGVIARQANAAVLASMGDTTVLVTVVGKKAEDVGRDFFPLTVNYQEKTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+II    +  +      
Sbjct: 74  --GGFFKRE---GRPSENETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDVI 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G +     G   G  +++ +  + +  D+D
Sbjct: 129 SMIGTSAALS-------------ISDLPFNGPLGVARVGYTNGEYVLNPNVSQLAESDLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHF 216
                T  G ++ V+  +E A+  ++  
Sbjct: 176 LVVAGTQ-GAVLMVE--SEAASLPEEVM 200


>gi|187732493|ref|YP_001881919.1| polynucleotide phosphorylase/polyadenylase [Shigella boydii CDC
           3083-94]
 gi|226702689|sp|B2U211|PNP_SHIB3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187429485|gb|ACD08759.1| polyribonucleotide nucleotidyltransferase [Shigella boydii CDC
           3083-94]
          Length = 711

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 536 VMEQAIN 542



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226


>gi|254461626|ref|ZP_05075042.1| 3' exoribonuclease family, domain 2 [Rhodobacterales bacterium
           HTCC2083]
 gi|206678215|gb|EDZ42702.1| 3' exoribonuclease family, domain 2 [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 713

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 92/246 (37%), Gaps = 27/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I     +     GS L   G+T  L   TL         ++ HG   +
Sbjct: 318 RIDGRDTTTIRPIVSETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDSLHGNFKS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+  +      + +  +
Sbjct: 378 NFLLHYNFPPYSVGEAGR----VGPPGRREIGHGKLAWRALQAVLPAATDFPYTVRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           + +++G +  A++ G  +++ D                 LK  VA ++ G++        
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKSAVAGVAMGLIMEEDGSYA 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T++G I  +Q   + A  + D     L  AKD    ++ 
Sbjct: 481 ILSDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKIAGITPDIMEKALAQAKDGRMHILG 539

Query: 233 LQKDVI 238
                I
Sbjct: 540 EMGKAI 545



 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 79/231 (34%), Gaps = 33/231 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+G  +   G+T ++   T     +     +     +       G +P 
Sbjct: 16  LTLETGKVARQADGCVIATLGETSVMAAVTFAKKQKPGQDFFPLTVHYQEKYYAAGKVP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI--QADGGTR 126
             G   KREA   R   +     R+I R +R +         ++++ C V+    D    
Sbjct: 75  --GGFFKREA---RPSEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLDNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----PIVDLDYGED 182
           T A+  A  AL                     G +A    G + G     P VD      
Sbjct: 128 TLAMIAASAALTISGA-------------PFMGPIACARVGFVDGEYTLNPTVDDMQDLR 174

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
              +   + V+  +   V +  S E    S+      +N A ++I  +I L
Sbjct: 175 LNPEQRLDLVVAGTKDAVMMVES-EAYELSEAEMLGAVNFAHEQIQPVIDL 224


>gi|110807033|ref|YP_690553.1| polynucleotide phosphorylase/polyadenylase [Shigella flexneri 5
           str. 8401]
 gi|191168040|ref|ZP_03029840.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B7A]
 gi|123342480|sp|Q0T0B7|PNP_SHIF8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611324|sp|Q83JG0|PNP_SHIFL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110616581|gb|ABF05248.1| Polyribonucleotide nucleotidyltransferase [Shigella flexneri 5 str.
           8401]
 gi|190901909|gb|EDV61658.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B7A]
 gi|313648594|gb|EFS13036.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri 2a
           str. 2457T]
 gi|320175528|gb|EFW50624.1| Polyribonucleotide nucleotidyltransferase [Shigella dysenteriae CDC
           74-1112]
 gi|323154378|gb|EFZ40579.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           EPECa14]
 gi|323173576|gb|EFZ59205.1| polyribonucleotide nucleotidyltransferase [Escherichia coli LT-68]
 gi|323178877|gb|EFZ64453.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 1180]
 gi|332752324|gb|EGJ82714.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
           4343-70]
 gi|332752851|gb|EGJ83236.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-671]
 gi|332754470|gb|EGJ84836.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
           2747-71]
 gi|332765161|gb|EGJ95388.1| pnp [Shigella flexneri 2930-71]
 gi|332998806|gb|EGK18402.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri VA-6]
 gi|332999243|gb|EGK18829.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-272]
 gi|333000227|gb|EGK19810.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-218]
 gi|333014593|gb|EGK33940.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-304]
 gi|333014965|gb|EGK34309.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-227]
          Length = 711

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 536 VMEQAIN 542



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226


>gi|325473489|gb|EGC76684.1| polyribonucleotide nucleotidyltransferase [Treponema denticola
           F0402]
          Length = 698

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 89/248 (35%), Gaps = 28/248 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R+ GR    +R I+    V     GS +   G+T  L   T+    +E++   I   + 
Sbjct: 313 LRVDGRGTKDIRPITCEIGVLPRPHGSAVFTRGETQSLGVVTIGTVFDEQIYDDIEGDRR 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G  V R     R+ G       +  R+L  +V         + +  
Sbjct: 373 ENFILHYNFPPFSVGE-VGRLGTGRREIGHG----NLAHRSLYPMVPEREKFPYTVRVVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171
           +V++++G +  A +    +++      M             K  VA I+ G++       
Sbjct: 428 EVLESNGSSSMATVCSGTLSMLHAGVPM-------------KKPVAGIAMGLITEGNDRY 474

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   + A  S +     L  AK+    ++
Sbjct: 475 AILSDILGEEDHLGDMDFKVAGTADG-ITGFQMDIKIAGVSPEIMKNALAQAKEGRMHIL 533

Query: 232 KLQKDVIS 239
            +    IS
Sbjct: 534 GIMNQCIS 541



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 80/226 (35%), Gaps = 27/226 (11%)

Query: 16  LTRRVS-KYAEGSCLVKFGDTHLLTT--ATLE--EKVPMWIRNTKHGWITAEYGMLPRST 70
           L      K A GS   ++  + +L T  A+ +  E +        +       G +P   
Sbjct: 16  LETGYLAKQANGSIYAEYAGSAILATICASGQAQEGLDYVPLTVDYNEKYYAAGKIP--- 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G  +KRE   GR   +   + R+I R +R + +       Q++  C            A+
Sbjct: 73  GGFIKRE---GRPKDKEILVSRLIDRPMRPLFNKEFGREIQLVPTCISTDMINPPDILAV 129

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
             +  A+H                    G VAA       G  I++  + +  T D++  
Sbjct: 130 IASSAAVH-------------ISDIPFDGPVAAARVAYKNGEYIINPTFSQIETADMEIV 176

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              T  G I  V+G A     S+      L  A + I  L K+Q+D
Sbjct: 177 VAGTKEG-ITMVEGGANE--VSEAVMLTALEKAHEMIKALCKMQED 219


>gi|187611309|sp|Q8EHL1|PNP_SHEON RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 699

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 91/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+ + +R +S+   V     GS L   G+T  L T TL  +        I   +  
Sbjct: 314 RIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      ++  R + +V+  +      + +  +
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHG----KLAWRGINAVMPSAEEFPYSVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A      ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-VTALQMDIKIEGITKEIMEIALQQAYGARVHILNV 535

Query: 234 QKDVISNE 241
               I + 
Sbjct: 536 MDQAIGSH 543



 Score = 72.8 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 67/206 (32%), Gaps = 27/206 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A+ + L   GDT +L T       E     +     +   T   G +P 
Sbjct: 15  VTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNYQEKTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+II    +  +      
Sbjct: 74  --GGFFKRE---GRPSEEETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEIEPDII 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G + G  +++    +     ++
Sbjct: 129 SMIGTSAALAISGI-------------PFNGPLGAARVGYINGEYVLNPTVKQIGASQLN 175

Query: 189 ANFVMTDSGHIV---EVQGSAERATF 211
                T+S  ++   E Q   E    
Sbjct: 176 LVVAGTESAVLMVESEAQALPEEVML 201


>gi|332086383|gb|EGI91530.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
           155-74]
          Length = 690

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 294 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 353

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 354 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 408

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 409 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 455

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 456 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 514

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 515 VMEQAIN 521



 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 73/224 (32%), Gaps = 30/224 (13%)

Query: 22  KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVKRE 77
           + A  + +V   DT +  T   ++K            +T  Y     + G    +  +RE
Sbjct: 4   RQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGRIPGSFFRRE 60

Query: 78  AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137
              GR       I R+I R +R +     +   Q+I     +         A+ GA  AL
Sbjct: 61  ---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAAL 117

Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197
                                G + A   G +    +++    E     +D     T++ 
Sbjct: 118 SLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA 164

Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
            ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 165 VLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 205


>gi|317046745|ref|YP_004114393.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. At-9b]
 gi|316948362|gb|ADU67837.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. At-9b]
          Length = 712

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTARDAQSLDELMGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPKQEDFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDEKFVV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G +  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-VTALQMDIKIEGITREIMQVALNQAKGARLHILSV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MEQAISTP 544



 Score = 65.1 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 67/212 (31%), Gaps = 27/212 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTADEIKQSRLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +  ++     +E    ++D     +
Sbjct: 177 LVVAGTQNAVLMV---ESEADILTEDQMLGAV 205


>gi|187611317|sp|A9MP39|PNP_SALAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 711

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 536 VMEQAIN 542



 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 75/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I  +  L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEA 226


>gi|47227071|emb|CAG00433.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 275

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 89/258 (34%), Gaps = 27/258 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  +L       A+GS LVK G+T ++     E   P  +     G+I  
Sbjct: 23  RPDGRELLEFRPTTLNIGSISTADGSALVKVGNTTIICGIKAELANPT-VEAPGKGYIVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQIIID 115
              + P  +          G  G ++Q   + I   + S  ++    L    G    ++ 
Sbjct: 82  NVDLPPLCSS-----RFRPGPPGEQAQACSQFIADLIESSEIIQPEDLCIERGKLCWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHD-----------CLQHMEDCSNKFQLSQVLKGHVA 162
           CD+  +  DG  R A +     AL                 + D   K  L  + K  V 
Sbjct: 137 CDLMCLDYDGNLRDACVIALLAALKITQLPEAIISTETCLPVVDLEKKRGL-NIRKHPVG 195

Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
           +  C       IVD    E++        V  +   +  V       + S +     +N 
Sbjct: 196 SSFCIFDESTLIVDPTDEEENLSTAQITVVTDEGDGLCAVHKPG-GVSLSGEKLQECINR 254

Query: 223 AKDRIADLIKLQKDVISN 240
           A  R  ++ KL   VI++
Sbjct: 255 ATVRQKEIQKLIDKVINS 272


>gi|82778478|ref|YP_404827.1| polynucleotide phosphorylase/polyadenylase [Shigella dysenteriae
           Sd197]
 gi|81242626|gb|ABB63336.1| polynucleotide phosphorylase [Shigella dysenteriae Sd197]
          Length = 734

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 398 TFLFHYNFPPYSVGETGIVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 452

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 499

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 559 VMEQAIN 565



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 39  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 96  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 200 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 249


>gi|237808986|ref|YP_002893426.1| polynucleotide phosphorylase/polyadenylase [Tolumonas auensis DSM
           9187]
 gi|259534170|sp|C4L8X0|PNP_TOLAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|237501247|gb|ACQ93840.1| Polyribonucleotide nucleotidyltransferase [Tolumonas auensis DSM
           9187]
          Length = 720

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 88/246 (35%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R +S+   V     GS L   G+T  L   TL  +        I   +  
Sbjct: 314 RIDGRDPQMIRALSVGTGVLPRVHGSALFTRGETQALVACTLGTERDAQTIDEITGERTD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 374 RFMLHYNFPPYCVGETGMMGSPKRREIGHG----RLARRGVSAVIPSQAEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKEGDSFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    +++     L  A+D    ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTSEG-VTALQMDIKIEGITKEIMQIALKQARDARLHILTV 535

Query: 234 QKDVIS 239
               I 
Sbjct: 536 MDKAIG 541



 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 73/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           +++   V  + A  + +V   DT +L T   +    E    +     +   T   G +P 
Sbjct: 15  VTIETGVMARQATAAVMVSMDDTAVLVTVVGKKEAVEGRDFFPLTVNYQERTYAAGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR         R+I R +R +     L   Q++     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLTARLIDRPIRPLFPEGFLNEVQVVATVMSVNPAVSPDIV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G   AL                     G + A   G +    I++    E     +D
Sbjct: 129 AMIGTSAALAISGI-------------PFNGPIGAARVGYINDQYILNPSVVELQESKLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T +  ++     +E A   ++     +    D++  +IK   +
Sbjct: 176 LVVAGTAAAVLMV---ESEAAILPEEVMLGAVVYGHDQLQTVIKAVNE 220


>gi|283788208|ref|YP_003368073.1| polyribonucleotide nucleotidyltransferase [Citrobacter rodentium
           ICC168]
 gi|282951662|emb|CBG91362.1| polyribonucleotide nucleotidyltransferase [Citrobacter rodentium
           ICC168]
          Length = 734

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 398 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 452

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     + 
Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFV 499

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 559 VMEQAIN 565



 Score = 69.0 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 75/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 39  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 96  IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I  +  L K+ 
Sbjct: 200 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQAINDLVKEA 249


>gi|313905717|ref|ZP_07839077.1| polyribonucleotide nucleotidyltransferase [Eubacterium
           cellulosolvens 6]
 gi|313469424|gb|EFR64766.1| polyribonucleotide nucleotidyltransferase [Eubacterium
           cellulosolvens 6]
          Length = 715

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 91/253 (35%), Gaps = 36/253 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH---LLTTATLE-----EKVPMWIRN 53
           R  GR   Q+R ++    V  +  GS +   G T    ++T A L      E +  +I  
Sbjct: 325 RPDGRAVRQIRPLAAEVDVIPHVHGSAMFTRGQTQICDVITLAPLSEAQKVEGLDPFITK 384

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            ++     +Y     S G          R+ G       +  RAL  V+         I 
Sbjct: 385 KRY---MHQYNFPSYSVGETKPSRGPGRREIGHG----ALAERALLPVLPTEEEFPYAIR 437

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY- 172
              +  +++G T  A++  + +AL                   +K  VA ISCG++ G  
Sbjct: 438 AVSETFESNGSTSQASVCASSMALMAAGV-------------PIKKPVAGISCGLVTGDT 484

Query: 173 -----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                 + D+   ED   D+D     T  G I  +Q   +    ++      ++  KD  
Sbjct: 485 DDDYLVLTDIQGLEDFFGDMDFKVAGTHDG-ITAIQMDIKIHGLTRQIVEEAISRCKDAR 543

Query: 228 ADLI-KLQKDVIS 239
             ++ ++ +  I+
Sbjct: 544 EYILTEVMEKAIA 556



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 75/226 (33%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +S+    V K A G   + +GDT LL TAT      E V  +  + +        G  
Sbjct: 25  RTLSVDIGRVGKQANGCAFMHYGDTTLLCTATASKQPREGVDFFPLSVEFEEKMYAVGKF 84

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +       
Sbjct: 85  P---GGFNKRE---GKASEHAVLTSRVIDRPMRPLFPKDYRNDVTLNNMVMSVDPACDPE 138

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  AA   GM+ G  +++  Y + +   
Sbjct: 139 VVAMLGSSLATA-------------ISDIPFDGPCAATQIGMIDGEFVINPGYEQKAEST 185

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  AE     +      + LA +    +I 
Sbjct: 186 LALTVASTRE-KVIMIEAGAEEIP--EAKMIEAIYLADETNKKVIA 228


>gi|15639871|ref|NP_219321.1| polynucleotide phosphorylase/polyadenylase [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189026109|ref|YP_001933881.1| polynucleotide phosphorylase/polyadenylase [Treponema pallidum
           subsp. pallidum SS14]
 gi|81344924|sp|O83856|PNP_TREPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226704828|sp|B2S4C3|PNP_TREPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|3323203|gb|AAC26576.1| polyribonucleotide nucleotidyltransferase (pnp) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018684|gb|ACD71302.1| polyribonucleotide nucleotidyltransferase [Treponema pallidum
           subsp. pallidum SS14]
 gi|291060245|gb|ADD72980.1| polyribonucleotide nucleotidyltransferase [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 702

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 85/247 (34%), Gaps = 27/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           +R+ GR  + +R I+    V     GS +   G+T  L   TL           I   + 
Sbjct: 313 LRIDGRAIDAIRPIACEVGVLPRPHGSAVFTRGETQSLAVVTLGAMSDGQVYDDIEGDRR 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G  + R  V  R+ G       +  R+L +V+         + +  
Sbjct: 373 ENFILHYNFPPFSVGE-IGRMGVGRREIGHGC----LAHRSLSAVIPDPEQFPYTVRVVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
           ++++++G +  A +    ++L                   +K  VA I+ G++       
Sbjct: 428 EILESNGSSSMATVCSGTLSLLHAGV-------------PIKKPVAGIAMGLITDGVRYA 474

Query: 174 -IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I   Q   +    S       L  A+     ++ 
Sbjct: 475 ILSDILGEEDHLGDMDFKVAGTCDG-ITGFQMDVKVEAVSASLMKEALQQARVGRLHILS 533

Query: 233 LQKDVIS 239
           +    IS
Sbjct: 534 VMNQTIS 540



 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 79/227 (34%), Gaps = 27/227 (11%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
            + L      + A GS  ++   T +L T       +E +                G +P
Sbjct: 13  PLLLESGYLARQANGSVYLQCEGTAILATVCSSAQRQEGLDYVPLTVDFNEKYYAVGKMP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   R   I R+I R +R + +    G      D  V+        
Sbjct: 73  ---GGFIKRE---GRPKDREILISRLIDRPMRPLFEKE-FGR-----DIHVV-------P 113

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
             I+   V  HD L  +   +          G VAA+    L G  +++  + +     +
Sbjct: 114 TCISSDMVHPHDVLAIVASSAAVTLSDIPFHGPVAAVRVAYLNGSYVINPTFSQIDAASM 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           +     T  G I  V+G A     S+D     L  A++ I  L  +Q
Sbjct: 174 EVVVAGTRQG-ITMVEGGARE--VSEDLMLGALEQAQEHIKALCDMQ 217


>gi|297184126|gb|ADI20245.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 711

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 82/229 (35%), Gaps = 20/229 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           RL GR   ++R I         A GS +   G+T  LTT TL   +     +    T   
Sbjct: 320 RLDGRATTEVRPIWSEVDYLPGAHGSAVFTRGETQSLTTVTLGTSLDANRIDDATFTGEE 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG       VS R+ G       +  RAL  +VD        I +  D
Sbjct: 380 KFYLHYNFPPFSTGEARPIRGVSRREIGHG----NLAQRALYQMVDPE--NPFTIRVVSD 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +++++G +  A +    +A+ D    M    +   +  +  G   A+         + D+
Sbjct: 434 ILESNGSSSMATVCAGTLAMMDAGVKMVRPVSGIAMGLISDGEKYAV---------LSDI 484

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
              ED   D+D     T+ G I   Q   +    S +     L  + + 
Sbjct: 485 LGDEDHLGDMDFKVTGTEKG-ITACQMDIKVKGLSYEILVKALKQSLEG 532



 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 84/236 (35%), Gaps = 31/236 (13%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTT-ATLEEKVPMWIRNTKHGWIT 60
             G      REI+L      K A+GS +VK G T LL T  + +E             +T
Sbjct: 13  PDG------REITLETGKLAKQADGSVVVKCGGTMLLATIVSSKEA----KDGIDFLPLT 62

Query: 61  AEYGMLPRSTGNRVKREAVS--GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
            +Y     +   RV    +   GR         R+I R LR +         +I +   +
Sbjct: 63  VDYR-EKFAANGRVPGGFLKREGRPSDNEVLTMRLIDRVLRPLFPKD--YHAEIQLMIQM 119

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           I  D      ++TG   +    +  +              G ++ +  G + G  +++  
Sbjct: 120 ISYDENVEATSLTGLAASAAIAVSDL-----------PFDGPISEVRVGRINGEHVINPT 168

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
             +   +++D   +      +V V+G  E    S++     +  A D I   I+ Q
Sbjct: 169 PAQIGELELDM-VIGASMDSVVMVEG--EMQEISEEEMVEAIKYAHDAIKVQIEAQ 221


>gi|46578918|ref|YP_009726.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120603481|ref|YP_967881.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio vulgaris
           DP4]
 gi|81567122|sp|Q72ER6|PNP_DESVH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610296|sp|A1VG88|PNP_DESVV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|46448330|gb|AAS94985.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120563710|gb|ABM29454.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris
           DP4]
 gi|311232776|gb|ADP85630.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris
           RCH1]
          Length = 760

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 84/233 (36%), Gaps = 27/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R I +   +   A GS L   G+T  L  ATL         ++  G +T 
Sbjct: 322 RIDGRDTTTVRPILIEAGILPRAHGSALFARGETKSLVVATLGSSTDEQRMDSLTGDVTK 381

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G     E    R   R      +  +ALR ++ L       + +  +
Sbjct: 382 RFMLHYNFAPYCVG-----EVKPVRVSRREIGHGALAEKALRPILPLGEDFPFTLRVVAE 436

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
            ++++G +  AA+ G  ++L D                 +   VA ++ G++        
Sbjct: 437 TMESNGSSSMAAVCGGCLSLMDAGV-------------PITAPVAGVAMGLIKEGDQYVV 483

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           + D+   ED+  D+D     T  G I  VQ   +      D     +  A+D 
Sbjct: 484 LTDILGDEDALGDMDFKIAGTSEG-ITAVQMDIKVKGLPTDVMARAMQQARDA 535



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 82/227 (36%), Gaps = 27/227 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPR 68
           EI      ++  A+G+  ++ G T +L TA     +  +  +    ++       G +P 
Sbjct: 18  EIVFETGRLANQADGAVWIQCGGTVVLVTACSQATDRDLGFFPLTVEYSEKMYAAGRIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR   R   + R+I R +R +         Q++ +      +  +   
Sbjct: 77  --GSFFRREI--GRPSERETLVSRLIDRPIRPLFPKGLKDEVQVLANVISSDQNNDSDVL 132

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+TGA  AL                S    G VA    G + G  +++    E      D
Sbjct: 133 AVTGASTAL-------------GLSSIPFDGPVAGARIGRIDGQFVINPTIKEMERS--D 177

Query: 189 ANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            N V+  S   +V V+G  E +   +      L      I  LI  Q
Sbjct: 178 LNIVLAASRDAVVMVEG--EASFVPEAVIVEALEWGHKEIQPLIDAQ 222


>gi|307546723|ref|YP_003899202.1| polynucleotide phosphorylase/polyadenylase [Halomonas elongata DSM
           2581]
 gi|307218747|emb|CBV44017.1| polynucleotide phosphorylase/polyadenylase [Halomonas elongata DSM
           2581]
          Length = 710

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 88/247 (35%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R + +         GS +   G+T  +  ATL    + ++   +   +  
Sbjct: 316 RIDGRDLKTVRPLDIEVGSLPKTHGSAIFTRGETQAVVVATLGTLRDAQLIESLEGERKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G          R+ G      R+  R + +++         I +  +
Sbjct: 376 RFLLHYNFPPYCVGEAGFMGGPKRREIGHG----RLARRGVEAMLPSEDEFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G+ +AL D    M             K  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPM-------------KAPVAGIAMGLVKDEDGFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G +  +Q   +    +++     L  A +    +++ 
Sbjct: 479 LTDILGDEDHLGDMDFKVAGSAEG-VTALQMDIKIEGINEEIMEQALQQAHEARLHILEQ 537

Query: 234 QKDVISN 240
              VI  
Sbjct: 538 MNTVIGQ 544



 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 76/232 (32%), Gaps = 35/232 (15%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ +V   DT +L T      +    P +  +  +   T   G +P 
Sbjct: 15  VTLETGRIARQASGAVMVTMDDTVVLCTVVAKKDVNPSQPFFPLSVHYQEKTYAVGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +     R+I R +R +     +   Q+I        +     A
Sbjct: 74  --GGFFKRE---GRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVICTVLSTDRNHDPDIA 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187
           A+ G   AL                     G + A   G    +   ++    E      
Sbjct: 129 AMIGTSAALA-------------ISGVPFNGPIGAARVGFTEEHGYFLNPSVEE--LASS 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232
           + N V+  +   V +  S E     +D            + +A + I +L  
Sbjct: 174 ELNMVVAGTEKAVLMVES-EANELLEDEMLGAVLYGHQEMQVAINAIQELAA 224


>gi|30064504|ref|NP_838675.1| polynucleotide phosphorylase/polyadenylase [Shigella flexneri 2a
           str. 2457T]
 gi|56480278|ref|NP_708965.2| polynucleotide phosphorylase/polyadenylase [Shigella flexneri 2a
           str. 301]
 gi|260857293|ref|YP_003231184.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O26:H11 str. 11368]
 gi|260869916|ref|YP_003236318.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O111:H- str. 11128]
 gi|309793742|ref|ZP_07688168.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           145-7]
 gi|30042763|gb|AAP18486.1| polynucleotide phosphorylase [Shigella flexneri 2a str. 2457T]
 gi|56383829|gb|AAN44672.2| polynucleotide phosphorylase [Shigella flexneri 2a str. 301]
 gi|257755942|dbj|BAI27444.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O26:H11 str. 11368]
 gi|257766272|dbj|BAI37767.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
           O111:H- str. 11128]
 gi|281602548|gb|ADA75532.1| Polynucleotide phosphorylase [Shigella flexneri 2002017]
 gi|308122699|gb|EFO59961.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
           145-7]
          Length = 734

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 398 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 452

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 453 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 499

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 500 VLSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 558

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 559 VMEQAIN 565



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 39  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 95

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 96  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 152

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 153 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 199

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 200 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 249


>gi|94501380|ref|ZP_01307900.1| polyribonucleotide nucleotidyltransferase [Oceanobacter sp. RED65]
 gi|94426493|gb|EAT11481.1| polyribonucleotide nucleotidyltransferase [Oceanobacter sp. RED65]
          Length = 698

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 101/249 (40%), Gaps = 28/249 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R++++   V K   GS L   G+T  + T TL    + +V  ++   +  
Sbjct: 319 RIDGRDNKTVRDLNIQTDVLKGTHGSALFTRGETQSIGTVTLGSTRDAQVVEFLHEVQKD 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIIDC 116
                Y   P S G   +  A   R+ G      R+  R +++++  L       + +  
Sbjct: 379 NFLFHYNFPPYSVGECGRMGAPGRREVGHG----RLARRGVQAMMPSLEDFP-YTVRVVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY--- 172
           ++ +++G +  A++  A +AL D                 +K  VA I+ G++  G    
Sbjct: 434 EITESNGSSSMASVCSASLALMDAGV-------------PIKAPVAGIAMGLVKEGERFS 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     +++G I  +Q   +    ++      L  A D    ++K
Sbjct: 481 VLTDILGDEDHLGDMDFKVAGSEAG-ITALQMDIKIQGITEQIMEIALEQALDARMTILK 539

Query: 233 LQKDVISNE 241
              +VI+  
Sbjct: 540 QMNEVIAEP 548



 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 77/230 (33%), Gaps = 28/230 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
           E++L  + +++ A G+ LV  G+  +L T   +         +     +       G +P
Sbjct: 17  EVTLETQRIARQASGAVLVTMGEIQVLATVVGKKETKPGQDFFPLTVNYQEKYYAAGKIP 76

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE    R   +     R+I R +R +     +   Q+++       +     
Sbjct: 77  ---GGFIKRE---NRPSEKETLTSRLIDRPIRPLFPEGYMNEVQVVLTVVSADKENDPDI 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTID 186
           AA+ GA  AL                     G + A   G       +++  Y +  T  
Sbjct: 131 AAMIGASAALAISGI-------------PFDGPIGAARVGYDAENGYVLNPTYAQLETSL 177

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T+   ++     +E    S+D     +  A       +   K+
Sbjct: 178 LDMVVAGTEDAVLMV---ESEAKELSEDQMLGGVLFAHQEFQVAVNAVKE 224


>gi|226504202|ref|NP_001146469.1| hypothetical protein LOC100280057 [Zea mays]
 gi|219887423|gb|ACL54086.1| unknown [Zea mays]
          Length = 240

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 58/256 (22%), Positives = 92/256 (35%), Gaps = 46/256 (17%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R  + T      A GS     GDT +L      +       N +   I  
Sbjct: 7   RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKSGTRKGENPEKASIEV 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            +                +G+ G + +E +  + R L+S+  L+   +    +   V+  
Sbjct: 67  VWK-------------PKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGD 113

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYG 180
           DG   + AI  +  AL      M             K    AISCG++  G  I+D    
Sbjct: 114 DGSLMSCAINASCAALAFAGIPM-------------KHLAVAISCGVMDNGVVILDTSRA 160

Query: 181 EDSTIDVDANFVMTDSGHIVE----VQGSAE----------RATFSQDHFFAMLN---LA 223
           E+      A+ V  +S   VE     Q   E              S+D +F  +    +A
Sbjct: 161 EEQQARSFAHLVFPNSRKSVESKDTTQRDEESERGLITCITHGAMSEDDYFNCIERGVMA 220

Query: 224 KDRIADLIK--LQKDV 237
             RI+D ++  LQK+ 
Sbjct: 221 SSRISDFMRKTLQKEA 236


>gi|329997819|ref|ZP_08302920.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. MS 92-3]
 gi|328538902|gb|EGF64965.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. MS 92-3]
          Length = 684

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 96/246 (39%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 294 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 353

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 354 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPTIEEFPYTVRVVSE 409

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 410 ITESNGSSSMASVCGASLALMDAGV-------------PVKAAVAGIAMGLVKEGDNFVV 456

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 457 LSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 515

Query: 234 QKDVIS 239
            +  I+
Sbjct: 516 MEQAIN 521



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 72/224 (32%), Gaps = 30/224 (13%)

Query: 22  KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVKRE 77
           + A  + +V   DT +  T   ++K            +T  Y     + G       +RE
Sbjct: 4   RQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGKIPGGFFRRE 60

Query: 78  AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137
              GR       I R+I R +R +     +   Q+I     +         A+ GA  AL
Sbjct: 61  ---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAAL 117

Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197
                                G + A   G +    +++    E  +  +D     T++ 
Sbjct: 118 SLSGI-------------PFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVAGTEAA 164

Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
            ++     +E    S+D     +    ++    I ++  L K+ 
Sbjct: 165 VLMV---ESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEA 205


>gi|307180205|gb|EFN68238.1| Exosome complex exonuclease RRP45 [Camponotus floridanus]
          Length = 387

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 47/261 (18%), Positives = 86/261 (32%), Gaps = 29/261 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR+  Q R + +         G C+V  G T  +   + + + P   R    G I  
Sbjct: 23  RLDGRRLLQPRPVKI---YFGSKWGCCMVSLGHTKAIAQVSCDIRQPKTFR-PNEGTIYI 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSR------QII 113
              + P +      +   SGRQ   +  I R + +  +    VDL +L          + 
Sbjct: 79  NVELAPLA-----AQHFESGRQSEAAILISRQLEKCFKDSKCVDLESLCIVADKKVWSLR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-----------LKGHVA 162
           ID ++I  DG     A      AL    +     + +  +                  V 
Sbjct: 134 IDINIINHDGNLIDCASIAVLAALMHFHRPDVTSTGEEIIIHPASEKDFLPLTLFHYPVC 193

Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML-N 221
                   G  I+D  Y E+     +    M     +  +       T + +   + + N
Sbjct: 194 VSFITFENGNTIMDPTYIEERVGVAELTLGMNSYRELCSLHFDYLTKTMTVEDVISAVSN 253

Query: 222 LAKDRIADLIKLQKDVISNEV 242
            A +    L++  K+ ++ +V
Sbjct: 254 HAANYATKLVQDIKEAVAKDV 274


>gi|297184037|gb|ADI20157.1| hypothetical protein [uncultured alpha proteobacterium
           EB080_L06A09]
          Length = 709

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 90/243 (37%), Gaps = 17/243 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  + +R I     V     GS L   G+T  L   TL       + +   G   +
Sbjct: 318 RIDGRDLSTVRPIISETAVLPRTHGSALFTRGETQALAVTTLGTGDDEQMIDALSGTYRS 377

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G    R    GR   R     ++  RAL++V+  +      I +  +
Sbjct: 378 NFLLHYNFPPYSVGE-CGRMMGPGR---REIGHGKLAWRALQAVLPPATEFPYTIRMVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +++ D    +        +  +L+               + D+
Sbjct: 434 ITESNGSSSMASVCGGSLSMMDAGVPLRAPVAGVAMGLILQDSGEYA--------VLTDI 485

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T++G I  +Q   + A  + +     +  AKD    ++    + 
Sbjct: 486 LGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKAMAQAKDGRLHILGEMANA 544

Query: 238 ISN 240
           ++ 
Sbjct: 545 LTE 547



 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 78/231 (33%), Gaps = 33/231 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A+ + +  +G+T +L         +E    +     +       G +P 
Sbjct: 16  LTLETGKIARQADSTVIATYGETSVLAAVCFAKKEKEGQSFFPLTVNYQEKYYAAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         QI +   V+  D      
Sbjct: 75  --GGFFKREA---RPTEKETLTARLIDRPIRPLFIPGFKHEVQITLT--VLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD----YGED 182
             A+  A  AL                     G +     G   G  +++      +   
Sbjct: 128 MVAMIAASAALTLSGA-------------PFMGPIGNCRVGFEGGQYVLNPTCDDMHELK 174

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +  D   + V+  +   V +  S E    +++     +N A ++I  +I +
Sbjct: 175 NNPDQRLDLVVAGTKDAVMMVES-EAYELTEEEMLGAINFAHEQIQPVIDM 224


>gi|329847329|ref|ZP_08262357.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis
           biprosthecum C19]
 gi|328842392|gb|EGF91961.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis
           biprosthecum C19]
          Length = 749

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 92/244 (37%), Gaps = 19/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR  +++R I     V     GS L   G+T  L  ATL    +E+    +  T   
Sbjct: 317 RVDGRPVDKVRAIVSEVGVLPRTHGSALFTRGETQALVVATLGTGDDEQYIDALDGTYKE 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++         + +  +
Sbjct: 377 KFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAVRPMLPTVEEFPYTVRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176
           + +++G +  A + G  +AL D    ++   +   +  +L+             Y I+ D
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLKSPVSGIAMGLILEPS---------GEYAILSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T +G I  +Q   +    +++     L  A +    +++    
Sbjct: 484 ILGDEDHLGDMDFKVAGTVNG-ITSLQMDIKVPGITEEIMTKALRQANEGRLHILEEMNK 542

Query: 237 VISN 240
            IS 
Sbjct: 543 AISG 546



 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 80/229 (34%), Gaps = 31/229 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R+++L    +++ A+ + L  +G+T +L T                  +T  Y     + 
Sbjct: 14  RKLTLETGRIARQADAAVLATYGETTVLATVVYARAPKP---GQDFFPLTVNYQEKTFAA 70

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           G       KRE   GR   +   + R+I R +R +         Q++  C V+  D    
Sbjct: 71  GKIPGGYFKRE---GRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVV--CTVLSHDMEND 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  AL                     G +     G++ G  +++    +   
Sbjct: 126 PDIVAMVAASAAL-------------TLSGVPFMGPIGGARVGIIDGEFVLNPTGDQVKE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
             +D     T +  ++ V+  +E    S+D   A L  A   +  +I+ 
Sbjct: 173 STLDLVVAGT-TDALMMVE--SEAKELSEDKMLAALMFAHRGMQPVIEA 218


>gi|300025003|ref|YP_003757614.1| polyribonucleotide nucleotidyltransferase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526824|gb|ADJ25293.1| polyribonucleotide nucleotidyltransferase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 733

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           MR+ GR    +R I     V     GS L   G+T  L  ATL           +  TK 
Sbjct: 314 MRIDGRDLKTVRPILSEVHVLPRTHGSALFTRGETQALVVATLGTGEDEQFIDSLEGTKK 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R     ++  RA+  ++         + +  
Sbjct: 374 ERFLLHYNFPPYSVGEVGR----MGSPGRREIGHGKLAWRAIHPMLPSQEDFPYTLRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A + G+ +AL D                 LK  VA I+ G++       
Sbjct: 430 EITESNGSSSMATVCGSSLALMDAGV-------------PLKSPVAGIAMGLIKEGDEFV 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED   D+D     T +G +  +Q   +    +++     L+ A D 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGTANG-VTSLQMDIKITGITEEIMRIALDQAHDG 529



 Score = 85.5 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 79/236 (33%), Gaps = 38/236 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R++ L     ++ A+ + + ++GDT +L T     +++  +  +     +   T   G +
Sbjct: 14  RKLKLETGHYARQADAAVMAQYGDTTVLATVVGARSVKPGIDFFPLTVNYQERTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   +     R+I R +R +         Q+++       +    
Sbjct: 74  P---GGYFKRE---GRPSEKETLTSRLIDRPIRPLFVEGFKNETQVVVTVLSHDLENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              +  A  AL                     G +     G++ G  +++    E     
Sbjct: 128 ILGMVAASAALTLSGL-------------PFLGPIGGARVGLVNGELVLNPMIDEMKDSA 174

Query: 187 VDANFVMT---------DSGHIVEVQGSAERATFSQDHF----FAMLNLAKDRIAD 229
           +D     T         ++  + E Q   E   F   H      A++ LA+    +
Sbjct: 175 LDLVVAGTADAVMMVESEAKELPEAQML-EAVVFGHKHMQPVIQAIITLAEKAAKE 229


>gi|229495732|ref|ZP_04389460.1| polyribonucleotide nucleotidyltransferase [Porphyromonas
           endodontalis ATCC 35406]
 gi|229317306|gb|EEN83211.1| polyribonucleotide nucleotidyltransferase [Porphyromonas
           endodontalis ATCC 35406]
          Length = 737

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 91/249 (36%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           RL GR+  ++R I +         GS +   G+T  LTT TL  K    + +        
Sbjct: 318 RLDGRKTTEIRPIWIETDCLPMPHGSAVFTRGETQSLTTVTLGTKADEKLVDDVLCRCKE 377

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    + A   R+ G       +  RAL+ ++         + +  D
Sbjct: 378 RFLLHYNFPPFSTGEARPQRATGRREIGHG----NLAFRALKRMIPDE--YPYVVRVISD 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 432 ILESNGSSSMATVCAGTLALMDAGVQ-------------IKKPVSGIAMGLISENKGTNY 478

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     L  A++    ++
Sbjct: 479 AVLSDILGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSYEILERALAQAREGRMHIL 537

Query: 232 KLQKDVISN 240
              ++ + +
Sbjct: 538 GKIEEAMPS 546



 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 80/230 (34%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGML 66
           R I +      K A+G+  V  G+T LL T                   +    +  G  
Sbjct: 15  RTIKVETGKLAKQADGAVTVTMGNTVLLATVCAAADAAPDCDFMPLQVDYKEKYSAVGRF 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   +RE   G+         R++ RALR +         ++ ++  +  ADG   
Sbjct: 75  P---GGFTRRE---GKASDYEILTSRLVDRALRPLFPAD--YHAEVFVNITLFSADG--- 123

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                   V + D L  +   S         +G ++ +    + G  +++  Y + +  D
Sbjct: 124 --------VDMPDALAGLAASSALAVSDIPFEGPISEVRVARINGEFLINPTYEQVANAD 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T   +I+ V+G  E     +      + +A + I    + Q +
Sbjct: 176 IDMMVAATID-NIMMVEG--EMDEVQEADMLEAIKVAHEAIKKQCQAQLE 222


>gi|206579040|ref|YP_002236426.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
           342]
 gi|288933408|ref|YP_003437467.1| polyribonucleotide nucleotidyltransferase [Klebsiella variicola
           At-22]
 gi|290511541|ref|ZP_06550910.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. 1_1_55]
 gi|226702656|sp|B5XSX9|PNP_KLEP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|206568098|gb|ACI09874.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
           342]
 gi|288888137|gb|ADC56455.1| polyribonucleotide nucleotidyltransferase [Klebsiella variicola
           At-22]
 gi|289776534|gb|EFD84533.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. 1_1_55]
          Length = 711

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 96/246 (39%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPTIDEFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PVKAAVAGIAMGLVKEGDNFVV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 536

Query: 234 QKDVIS 239
            +  I+
Sbjct: 537 MEQAIN 542



 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGK 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGGFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E  +  +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQEELKSSKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++  L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEA 226


>gi|312972565|ref|ZP_07786738.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           1827-70]
 gi|310332507|gb|EFP99720.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
           1827-70]
          Length = 595

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 199 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 258

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 259 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 313

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 314 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 360

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 361 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 419

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 420 VMEQAIN 426


>gi|163847604|ref|YP_001635648.1| polynucleotide phosphorylase/polyadenylase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222525460|ref|YP_002569931.1| polynucleotide phosphorylase/polyadenylase [Chloroflexus sp.
           Y-400-fl]
 gi|187610252|sp|A9WEJ7|PNP_CHLAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096674|sp|B9LH03|PNP_CHLSY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|163668893|gb|ABY35259.1| Polyribonucleotide nucleotidyltransferase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449339|gb|ACM53605.1| Polyribonucleotide nucleotidyltransferase [Chloroflexus sp.
           Y-400-fl]
          Length = 755

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 98/249 (39%), Gaps = 29/249 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
           +R+ GR  +++R IS+   V     GS +   G T +LT  TL     E+KV      T 
Sbjct: 320 IRVDGRALDEIRPISIEVGVIPRVHGSAVFTRGQTQVLTITTLGSPGDEQKVDDLGIETS 379

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I   Y   P STG   +      R  G       +  R+L +V+         I + 
Sbjct: 380 KRYIH-HYNFPPFSTGEVRRIGTPRRRDIGHG----ALAERSLYAVLPDEKDFPYTIRLV 434

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            +V+ ++G +  A++ G+ ++L D                 +K  VA ++ G++ G    
Sbjct: 435 SEVLSSNGSSSMASVCGSSLSLMDAGV-------------PIKAPVAGVAMGLITGEDGR 481

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED+  D+D     T  G +  +Q   +    + +        A+     +
Sbjct: 482 WRVLTDIQGLEDALGDMDFKVAGTAKG-VTGLQMDIKTTGITYEIMREAFAQARAGRLFI 540

Query: 231 IKLQKDVIS 239
           +    +VIS
Sbjct: 541 LDKMNEVIS 549



 Score = 78.6 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 80/234 (34%), Gaps = 31/234 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R ++L     ++ A+G+ + ++GDT LL T        E    +     +       G +
Sbjct: 16  RTLTLEAGRFAEQADGAVVARYGDTMLLATVVCAKEAREGTDFFPLTVDYEEKMYAVGKI 75

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ--ADGG 124
           P   GN  KRE   GR    +  I R+  R LR +         Q+II    I    D G
Sbjct: 76  P---GNFFKRE---GRPTTTAILISRLTDRPLRPLFPKGFYNEVQVIITTFSIDMENDPG 129

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
                           L  +   +          G V A+  G L G  +V+    E + 
Sbjct: 130 P---------------LAIIAASAALCISDIPFAGPVGAVQMGHLNGQLVVNPKMNEIAD 174

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             +D     T    ++   G+ E    ++D     +         +  LQ+ ++
Sbjct: 175 SRLDLVVAGTKDAVLMVEAGAYE---LTEDEMLQAVIDGHAVCKQICDLQEQLV 225


>gi|310779081|ref|YP_003967414.1| polyribonucleotide nucleotidyltransferase [Ilyobacter polytropus
           DSM 2926]
 gi|309748404|gb|ADO83066.1| polyribonucleotide nucleotidyltransferase [Ilyobacter polytropus
           DSM 2926]
          Length = 716

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 95/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----HG 57
           R+ GR+ +++R++           GS +   G+T  + T TL  K    + +      + 
Sbjct: 324 RVDGRKTDEIRDLYAEIGTLPLPHGSAMFTRGETQAIVTTTLGTKQDEQLVDGLNEEYYK 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      A   R+ G       +  RAL  V+  +      + +  +
Sbjct: 384 KFYLHYNFPPYSVGEARFMRAPGRRELGHG----ALAERALSYVMPSTDDFPYTVRVVSE 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A+I G  +AL                   +K HVA I+ G++     Y +
Sbjct: 440 ITESNGSSSQASICGGSLALMAAGV-------------PVKSHVAGIAMGLVKEGDDYAV 486

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T++G I  +Q   +     ++     L  A D    +I +
Sbjct: 487 LTDIMGLEDHLGDMDFKVAGTEAG-ITALQMDIKITGIDENVMRIALKQALDARLQIIGV 545

Query: 234 QKDVIS 239
            K+ I 
Sbjct: 546 MKNAIE 551



 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 77/230 (33%), Gaps = 27/230 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +SL+   +++ + G+ ++++GDT LL+T        +    +             G  
Sbjct: 14  RTLSLSTGKIARQSCGAVMIQYGDTILLSTVNRSKEGRKGADFFPLTVDFLEKYYAVGKF 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KREA   R    +    R+I R +R +          I+        D    
Sbjct: 74  P---GGFHKREA---RPSTDATLTARLIDRPIRPMFPEGFNYDVHIVNTVFSYDGDNTPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              I G+  AL                     G VA +   M     I++    E    +
Sbjct: 128 YLGIIGSSAAL-------------MLSDIPFLGPVAGVVVAMKGEEFILNPTPKE--LAE 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              N  +  +   V +  +   +  S++     +  A D I  + + Q++
Sbjct: 173 SPLNLSVAGTKDAVNMVEAG-ASEMSEEVMLKAILFAHDNIKKICEFQEE 221


>gi|332017453|gb|EGI58176.1| Polyribonucleotide nucleotidyltransferase 1, mitochondrial
           [Acromyrmex echinatior]
          Length = 616

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 89/248 (35%), Gaps = 19/248 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIR 52
           +R  GR  + +R+IS    +     GS + + G T ++ T TL+        +   M I 
Sbjct: 203 VRCDGRSPSHLRDISCQVDLFNPLHGSAVFQRGQTQVMCTVTLDSLENALKMDATSMLIS 262

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
             K       Y   P +T         S R G R      +  +ALR V+         I
Sbjct: 263 GVKEKNFFLHYEFPPYATNE----TGNSTRVGRRELGHGALAEKALRPVLPKD--YPFTI 316

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            +  +V++++G +  A + G  +AL D    +   +       V K      +   +  Y
Sbjct: 317 RLTSEVLESNGSSSMATVCGGSLALFDAGIPISSAAAGVAFGLVTK---YNETNTQIEDY 373

Query: 173 PIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
            I+ D+   ED   D+D     T  G     Q   +            L+   +   ++I
Sbjct: 374 KILTDILGIEDYLGDMDFKIAGTK-GGFTAFQADIKIPGIPLKIIMECLDKTTNAKLEII 432

Query: 232 KLQKDVIS 239
           K+   VI 
Sbjct: 433 KIMNKVIR 440


>gi|169778981|ref|XP_001823955.1| exosome complex endonuclease 1 [Aspergillus oryzae RIB40]
 gi|238499561|ref|XP_002381015.1| exosome complex endonuclease 1, putative [Aspergillus flavus
           NRRL3357]
 gi|83772694|dbj|BAE62822.1| unnamed protein product [Aspergillus oryzae]
 gi|220692768|gb|EED49114.1| exosome complex endonuclease 1, putative [Aspergillus flavus
           NRRL3357]
          Length = 269

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 8/149 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTK 55
           +RL GR+ N++R +      +  + GS  +  G+T ++ +     +            + 
Sbjct: 14  LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTTIMCSVHGPAEGRRGDATGGAAGSS 73

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
              +  +  +   +  +R +R   S +Q  R   I   +  A +S +         I I 
Sbjct: 74  GAVVEVDVNVAGFAGVDRKRRAGGSDKQSSR---IATTLRAAFQSHLHTYLYPHSTISIH 130

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHM 144
             V+ ADG    AAI    +AL D    M
Sbjct: 131 VSVLSADGSLLAAAINACTLALVDAGIPM 159


>gi|182626381|ref|ZP_02954135.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           D str. JGS1721]
 gi|177908332|gb|EDT70880.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           D str. JGS1721]
          Length = 702

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 88/241 (36%), Gaps = 16/241 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R  GR  +Q+R I     +     G+ L   G T ++T ATL    E ++   I   +  
Sbjct: 312 RPDGRAFDQVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISEIQILDGIGEEESK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  RAL  ++   A     I +  +
Sbjct: 372 RYMHHYNFPAYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSEAEFPYTIRLVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A++ G+ +AL D    ++  +    +  +        S  +     + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLI-------TSKDLTEEEVLTDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   +    S+      +  A+     ++   K+ 
Sbjct: 481 QGLEDFFGDMDFKVAGTEEG-ITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKEC 539

Query: 238 I 238
           I
Sbjct: 540 I 540



 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 84/233 (36%), Gaps = 27/233 (11%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + +        ++ + L+ +GDT +LT         E +  +  + ++       G +
Sbjct: 12  RPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYEERLYSVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R I R LR +         Q++     ++ D    
Sbjct: 72  P---GGFIKRE---GKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDNLPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI  A +AL                S      VAA+  G++    I++    E     
Sbjct: 126 ILAINAASMALC-------------LSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESS 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +      T    ++ ++   +     +D     +    D+  D+IK Q++ +S
Sbjct: 173 LQLTVCATKE-RVMMIEAGGDEIP--EDTMINAIKFGFDKCQDIIKFQEEAVS 222


>gi|115372776|ref|ZP_01460082.1| polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823414|ref|YP_003955772.1| polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370257|gb|EAU69186.1| polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396486|gb|ADO73945.1| Polyribonucleotide nucleotidyltransferase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 807

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 79/229 (34%), Gaps = 18/229 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59
           R+  R   ++R I+    V     GS +   G+T  L   TL             G +  
Sbjct: 400 RIGARGHAEVRSITCEVGVLPRTHGSAVFTRGETQALVVTTLGTSEDEQRLELLGGMVFK 459

Query: 60  --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S            R+ G       +  RALR++   S      I +  D
Sbjct: 460 RFMLHYNFPPFSVNETKPLRGPGRREVGHG----ALAERALRNMAPKSDSFPYTIRVVSD 515

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +++++G +  A++ G  +AL D    ++       +  V +G   AI         + D+
Sbjct: 516 ILESNGSSSMASVCGGTLALMDAGVPIKAPVAGIAMGLVKEGDKVAI---------LSDI 566

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
              ED   D+D     T  G I  +Q   +    + +     L  A+  
Sbjct: 567 LGDEDHLGDMDFKVCGTSKG-ITSIQMDIKITGLTTEIMSRALEQARQG 614



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 89/229 (38%), Gaps = 28/229 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----MLP 67
           E+S+    ++K A+G+ +V++GDT LL TA    +     ++     +T EY        
Sbjct: 97  ELSIEVGRLAKQADGAVVVRYGDTMLLVTAVSARE----KKDVDFLPLTVEYQEKLYSAG 152

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
           R  G+  KRE   GR   +     R++ R+ R +         QII      + +     
Sbjct: 153 RIPGSYFKRE---GRLTEKETLASRLVDRSCRPLFPDGYAYETQIIASVVSAEPENEGDI 209

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
             ITGA  AL             +       G +A I  G + G  + +    +    D+
Sbjct: 210 HGITGASAAL-------------WVSDIPFNGPIAGIRVGRVDGKFVANPTLKQREQSDI 256

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D    ++    IV V+G AE    S+    A L   K  +   + +Q +
Sbjct: 257 DLVMAVSREA-IVMVEGGAEE--VSEADMVAALEFGKQAVQPALDIQDE 302


>gi|83644105|ref|YP_432540.1| polynucleotide phosphorylase/polyadenylase [Hahella chejuensis KCTC
           2396]
 gi|123726449|sp|Q2SMK9|PNP_HAHCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|83632148|gb|ABC28115.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Hahella chejuensis KCTC 2396]
          Length = 703

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 92/249 (36%), Gaps = 28/249 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           R+ GR    +R++ +   V     GS L   G+T  L TATL     + +       K  
Sbjct: 316 RIDGRDTKTVRDLKIEVGVLPNTHGSALFTRGETQALVTATLGTMRDVLMVDALEGEKKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIIDC 116
                Y   P S G   +   V  R+ G      R+  R +++++  L       +    
Sbjct: 376 SFMFHYNFPPYSVGEASRVGGVGRREIGHG----RLARRGVQALMPNLEEFP-YAVRCVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGI-------------PVKAPVAGIAMGLVKEGDSFA 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T+ G +  +Q   +    + +     L  A      ++ 
Sbjct: 478 VLTDILGDEDHLGDMDFKVAGTEKG-VTALQMDIKINGITDEIMEIALEQALHARLHILG 536

Query: 233 LQKDVISNE 241
               VIS  
Sbjct: 537 EMNKVISEP 545



 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 82/229 (35%), Gaps = 28/229 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE-EKVP---MWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ LV   DT +L TA  E E VP    +  +  +   T   G +P 
Sbjct: 15  VTLETGRIARQATGAVLVTMDDTVVLVTAVAEKEAVPGRDFFPLSVHYQEKTYAAGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +     R+I R +R +     +   QII  C V+ A+      
Sbjct: 74  --GGYFKRE---GRPSEKETLTSRLIDRPIRPLFPDGFMNEVQII--CTVMSANKDVD-- 124

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDSTIDV 187
                     D    +   +         +G +AA   G       +++  +       +
Sbjct: 125 ---------PDIASIIGAAAALEISGVPFQGPLAAARVGYTDEDGYLLNPGFKAIENSKL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D     T+   ++     +E    ++D     +  A   +   ++  K+
Sbjct: 176 DMVVAGTEDAVLMV---ESEAKELTEDQMLGAVLFAHQEMQVAVQAIKE 221


>gi|218887594|ref|YP_002436915.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|226702648|sp|B8DN07|PNP_DESVM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218758548|gb|ACL09447.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 756

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 88/246 (35%), Gaps = 27/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R I +   +   A GS L   G+T  L  ATL         ++  G +T 
Sbjct: 322 RIDGRDTKTVRPILIEAGLLPRAHGSALFSRGETKSLVVATLGSSTDSQRMDSLVGDVTK 381

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G     E    R   R      +  +AL+ V+         + +  +
Sbjct: 382 KFMLHYNFPPYSVG-----EVKMSRVSRREIGHGALAEKALKPVLPQDDSFPFTLRVVAE 436

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
            ++++G +  AA+ G  ++L D                 +   VA ++ G++        
Sbjct: 437 TMESNGSSSMAAVCGGSLSLMDAGV-------------PVTAPVAGVAMGLIKEEGEYLV 483

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED+  D+D     T  G I  VQ   +      D     +  A++    ++  
Sbjct: 484 LTDILGDEDALGDMDFKIAGTAEG-ITAVQMDIKITGLPTDVMARAMAQAREARLHILAE 542

Query: 234 QKDVIS 239
              V+ 
Sbjct: 543 MAKVLE 548



 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 82/226 (36%), Gaps = 25/226 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           EI L    ++  A G+  V+ G T +L TA    LE  +  +     +       G +P 
Sbjct: 18  EIILETGRLANQAHGAVWVQCGGTVVLVTACTQPLERDMGFFPLTVDYSEKMYAAGRIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR   R   + R+I R +R +         QI+ +      +  +   
Sbjct: 77  --GSFFRREI--GRPSERETLVSRLIDRPVRPLFTKGFRDEVQILANVISADQENDSDVL 132

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+TGA  AL                    +G VA    G + G  +++    E    D+ 
Sbjct: 133 AVTGASAALS-------------ISPIPFEGPVAGARIGRVNGEFVLNPTMKEMEASDLA 179

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
              +      +V V+G  E     +D   A L  A   I  LI  Q
Sbjct: 180 I-VIAASRDSVVMVEG--EAHFVPEDVIVAALEWAHKEIQPLIDAQ 222


>gi|88801520|ref|ZP_01117048.1| putative polyribonucleotide nucleotidyltransferase [Polaribacter
           irgensii 23-P]
 gi|88782178|gb|EAR13355.1| putative polyribonucleotide nucleotidyltransferase [Polaribacter
           irgensii 23-P]
          Length = 746

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 77/230 (33%), Gaps = 18/230 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKH 56
           +RL GR+ +++R I           GS +   G+T  L T TL                 
Sbjct: 317 LRLDGRKTDEIRPIWSEVDYLPSVHGSAIFTRGETQALATVTLGTSRDANKIDMPSFEGE 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P  TG        S R+ G       +  R L+ ++         + +  
Sbjct: 377 ENFYLHYNFPPFCTGEARPIRGTSRREVGHG----NLAQRGLKGMIPTD--CPYTVRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G +  A +    +AL D    M        +S +  G ++    G      + D
Sbjct: 431 EVLESNGSSSMATVCAGTMALMDAGVQM-----IRPVSGIAMGLISDAESGKYA--VLSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           +   ED   D+D     T  G I   Q   +      +     L  A++ 
Sbjct: 484 ILGDEDHLGDMDFKVTGTSEG-ITACQMDIKVKGLGYEILVNALKQAREG 532



 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 79/227 (34%), Gaps = 26/227 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNT-KHGWITAEYGMLP 67
           REIS+      K A GS +V+ G   +L T     E+K   ++  T  +    A  G  P
Sbjct: 16  REISIETGKLAKQAHGSVVVQSGKCMMLCTVVSNYEQKDLGFLPLTVDYREKFAAAGRYP 75

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KREA        +    R++ R LR +         Q++I       D     
Sbjct: 76  ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKDYTAETQVMIQLMSHDED----- 124

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                    + D +  +   +         +  ++    G + G  I++    + +  D+
Sbjct: 125 --------VMPDAMAGLAASAAIQLSDFPFECAISEARVGRINGKFIINPTRAQLAESDI 176

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D   +   +  ++ V+G  E    S++     +  A + I      Q
Sbjct: 177 DM-MIGASADSVMMVEG--EMDEISEEEMADAIKFAHEAIKVQCAAQ 220


>gi|134076396|emb|CAK48214.1| unnamed protein product [Aspergillus niger]
          Length = 248

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 83/245 (33%), Gaps = 19/245 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-----WIRNTK 55
           +RL GR+ N++R +      +  + GS  +  G+T +L +     +            + 
Sbjct: 14  LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTAILCSVHGPAEGRRGDATGGAAGSA 73

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
              +  +  +   +  +R +R   S +Q  R   +  ++  A +S +         I I 
Sbjct: 74  GAVVEVDVNVAGFAGVDRKRRAGGSDKQSSR---VATILRSAFQSHLHTHLYPHSTISIH 130

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
             V+ +DG    AA+    +AL D    M         S   +         +L      
Sbjct: 131 VSVLSSDGSLLAAAVNACTLALVDAGIPMPGLLCGCTASTP-RDPNNDTLDPLLDLSL-- 187

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
                E+     +  F+   +   ++V      +     +   ML +  D    + ++ +
Sbjct: 188 ----PEEQ----ELPFLTVGTTTAMKVAMLTMDSKVHCTYVETMLAVGIDGCKQIREILE 239

Query: 236 DVISN 240
            VI  
Sbjct: 240 GVIKK 244


>gi|296120652|ref|YP_003628430.1| polyribonucleotide nucleotidyltransferase [Planctomyces limnophilus
           DSM 3776]
 gi|296012992|gb|ADG66231.1| Polyribonucleotide nucleotidyltransferase [Planctomyces limnophilus
           DSM 3776]
          Length = 703

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 92/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPM--WIRNTKH 56
           +RL GR+ + +R +S    V     GS L   G+T  L T TL     V     +   + 
Sbjct: 314 VRLDGRKHDDLRAVSCAASVLPRVHGSSLFTRGETQSLATVTLGTIRDVQRVEGLFGEEA 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G          R+ G       +  R++ SV+         I +  
Sbjct: 374 KAFMLDYYFPPYSVGECKPLRGPGRRELGHG----ALAERSVASVLPSPEKFPYTIRVIS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           D+++++G +  A++  A +AL D                 +   VA IS G++       
Sbjct: 430 DILESNGSSSMASVCSATLALMDAGV-------------PISQPVAGISIGLVKSADRFI 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    S++   A L  AK    +L+K
Sbjct: 477 LLTDIMGDEDHFGDMDFKVAGTQKG-VTGIQLDLKIDGISEEIVRATLEQAKKARIELLK 535

Query: 233 LQKDVISNE 241
                I   
Sbjct: 536 TMLSAIRRP 544



 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 93/235 (39%), Gaps = 30/235 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67
           R +S+T   ++K A G+  +++G+T +   A      P    +     +    A  G  P
Sbjct: 12  RTLSITTGELAKQAAGAVTIQYGETMVFVAAQNGPSRPGTDFFPLTCDYRERLAAAGKFP 71

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
              G  +KRE   GR   R     R+  R +R +     +   Q  +  +V+ +DG    
Sbjct: 72  ---GGFIKRE---GRPTLREVLTSRLTDRPIRPLFPEGYIEEVQ--VMSNVLASDGVNDP 123

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              +I GA  AL                    +G +AA+  G++ G  I+     + +  
Sbjct: 124 DVLSIIGASAALCLA-------------PVPFQGPLAAVRVGLIDGEFILFPTQEQIADS 170

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           ++D     T+   ++ ++G  ++    +D     +      I +L +LQ ++++ 
Sbjct: 171 ELDLVVAGTEK-SVLMIEGFGKQ--LPEDQMADAIMFGHRTIVELCQLQLELVAK 222


>gi|260582885|ref|ZP_05850670.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           NT127]
 gi|260094098|gb|EEW78001.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           NT127]
          Length = 709

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   +  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q++     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD   ++     +E    +++   A +     +   +I+  K+
Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVIEAIKE 220


>gi|110803188|ref|YP_698967.1| polynucleotide phosphorylase/polyadenylase [Clostridium perfringens
           SM101]
 gi|123146059|sp|Q0SSE0|PNP_CLOPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110683689|gb|ABG87059.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           SM101]
          Length = 702

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 88/241 (36%), Gaps = 16/241 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R  GR  +++R I     +     G+ L   G T ++T ATL    E ++   I   +  
Sbjct: 312 RPDGRAFDEVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGAISEIQILDGIGEEESK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  RAL  ++   A     I +  +
Sbjct: 372 RYMHHYNFPAYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSEAEFPYTIRLVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A++ G+ +AL D    ++  +    +  +        S  +     + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLI-------TSKDLTEEEVLTDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   +    S+      +  A+     ++   K+ 
Sbjct: 481 QGLEDFFGDMDFKVAGTEEG-ITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKEC 539

Query: 238 I 238
           I
Sbjct: 540 I 540



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 84/233 (36%), Gaps = 27/233 (11%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + +        ++ + L+ +GDT +LT         E +  +  + ++       G +
Sbjct: 12  RPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYEERLYSVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R I R LR +         Q++     ++ D    
Sbjct: 72  P---GGFIKRE---GKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDNLPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI  A +AL                S      VAA+  G++    I++    E     
Sbjct: 126 ILAINAASMALC-------------LSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESS 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +      T    ++ ++   +     +D     +    D+  D+IK Q++ +S
Sbjct: 173 LQLTVCATKE-RVMMIEAGGDEIP--EDTMINAIKFGFDKCQDIIKFQEEAVS 222


>gi|168207524|ref|ZP_02633529.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           E str. JGS1987]
 gi|168216967|ref|ZP_02642592.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           NCTC 8239]
 gi|170661139|gb|EDT13822.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           E str. JGS1987]
 gi|182380890|gb|EDT78369.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           NCTC 8239]
          Length = 702

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 88/241 (36%), Gaps = 16/241 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R  GR  +++R I     +     G+ L   G T ++T ATL    E ++   I   +  
Sbjct: 312 RPDGRAFDEVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISEIQILDGIGEEESK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  RAL  ++   A     I +  +
Sbjct: 372 RYMHHYNFPAYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSEAEFPYTIRLVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A++ G+ +AL D    ++  +    +  +        S  +     + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLI-------TSKDLTEEEVLTDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   +    S+      +  A+     ++   K+ 
Sbjct: 481 QGLEDFFGDMDFKVAGTEEG-ITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKEC 539

Query: 238 I 238
           I
Sbjct: 540 I 540



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 84/233 (36%), Gaps = 27/233 (11%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + +        ++ + L+ +GDT +LT         E +  +  + ++       G +
Sbjct: 12  RPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYEERLYSVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R I R LR +         Q++     ++ D    
Sbjct: 72  P---GGFIKRE---GKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDNLPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI  A +AL                S      VAA+  G++    I++    E     
Sbjct: 126 ILAINAASMALC-------------LSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESS 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +      T    ++ ++   +     +D     +    D+  D+IK Q++ +S
Sbjct: 173 LQLTVCATKE-RVMMIEAGGDEIP--EDTMINAIKFGFDKCQDIIKFQEEAVS 222


>gi|148825487|ref|YP_001290240.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           PittEE]
 gi|187610272|sp|A5UAQ6|PNP_HAEIE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148715647|gb|ABQ97857.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           PittEE]
          Length = 709

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   +  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q++     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD   ++     +E    +++   A +     +   +I+  K+
Sbjct: 176 LVVAGTDKAVLMV---ESEADVLTEEQMLASVVFGHQQQQVVIEAIKE 220


>gi|187610338|sp|A8AQ53|PNP_CITK8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 711

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 98/246 (39%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPEMDKFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 536

Query: 234 QKDVIS 239
            +  I+
Sbjct: 537 MEQAIN 542



 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++  L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDTMLGAVVFGHEQQQIVIQNINDLVKEA 226


>gi|157148733|ref|YP_001456052.1| polynucleotide phosphorylase/polyadenylase [Citrobacter koseri ATCC
           BAA-895]
 gi|157085938|gb|ABV15616.1| hypothetical protein CKO_04562 [Citrobacter koseri ATCC BAA-895]
          Length = 722

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 98/246 (39%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 326 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 385

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 386 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPEMDKFPYTVRVVSE 441

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 442 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 488

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 489 LSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 547

Query: 234 QKDVIS 239
            +  I+
Sbjct: 548 MEQAIN 553



 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 27  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 83

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 84  IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 140

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 141 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 187

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++  L K+ 
Sbjct: 188 LVVAGTEAAVLMV---ESEAELLSEDTMLGAVVFGHEQQQIVIQNINDLVKEA 237


>gi|329901002|ref|ZP_08272663.1| Polyribonucleotide nucleotidyltransferase [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327549290|gb|EGF33865.1| Polyribonucleotide nucleotidyltransferase [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 717

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 90/241 (37%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I++   V     GS L   G+T  L  ATL         +   G    
Sbjct: 320 RIDGRDTRTVRPIAIRTGVLPRTHGSALFTRGETQALVIATLGTARDEQKIDALMGEYSD 379

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +      R+ G  +  +R +  AL  V + S      + +  +
Sbjct: 380 RFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALLAALPPVEEFSY----SVRLVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    M+       +  +  G   A+         + D+
Sbjct: 436 ITESNGSSSMASVCGGCLALMDAGVPMQAHVAGIAMGLIKDGGKFAV---------LTDI 486

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   +    +++     L  AK+    ++   +  
Sbjct: 487 LGDEDHLGDMDFKVAGTAKG-ITALQMDIKIQGITKEIMQVALAQAKEGRLHILDKMQQA 545

Query: 238 I 238
           +
Sbjct: 546 V 546



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 84/233 (36%), Gaps = 36/233 (15%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLP 67
           +++L    +++ A G+ LV   DT +L T             +     +   T   G +P
Sbjct: 15  QVTLETGEIARQASGAVLVSIEDTVVLATVVARKDAKPGQDFFPLTVDYVEKTYAAGRIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR   +     R+I R +R +     +   QIII    +  +     
Sbjct: 75  ---GGFFKRE---GRPSEKETLTSRLIDRPVRPLFPEGYMNEVQIIIHVLSVNPEIDPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ GA  AL                     G V A   G + G  +++    +  + D+
Sbjct: 129 AAMIGASAALS-------------VSGVPFSGPVGAARVGYINGQYVLNPTTTQLKSSDL 175

Query: 188 DANFVMTDSGHIV----EVQGSAE----RATFSQDHFFAMLNLAKDRIADLIK 232
           D     T++  ++      Q S E       F  +   A+++     I +L++
Sbjct: 176 DLVVAGTEAAVLMVESEAKQLSEEVMLGAVVFGHEQMKAVID----AIHELVR 224


>gi|323183119|gb|EFZ68517.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 1357]
          Length = 696

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 300 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 359

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 360 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 414

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 415 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 461

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 462 VLSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 520

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 521 VMEQAIN 527



 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 1   MTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 57

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 58  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 114

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 115 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 161

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 162 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 211


>gi|169342748|ref|ZP_02863788.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           C str. JGS1495]
 gi|169299254|gb|EDS81324.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           C str. JGS1495]
          Length = 702

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 88/241 (36%), Gaps = 16/241 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R  GR  +Q+R I     +     G+ L   G T ++T ATL    E ++   I   +  
Sbjct: 312 RPDGRAFDQVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISEIQILDGIGEEESK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  RAL  ++   A     I +  +
Sbjct: 372 RYMHHYNFPAYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSEAEFPYTIRLVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A++ G+ +AL D    ++  +    +  +        S  +     + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLI-------TSKDLTEEEVLTDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   +    S+      +  A+     ++   K+ 
Sbjct: 481 QGLEDFFGDMDFKVAGTEEG-ITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKEC 539

Query: 238 I 238
           I
Sbjct: 540 I 540



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 84/233 (36%), Gaps = 27/233 (11%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + +        ++ + L+ +GDT +LT         E +  +  + ++       G +
Sbjct: 12  RPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYEERLYSVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R I R LR +         Q++     ++ D    
Sbjct: 72  P---GGFIKRE---GKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDNIPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI  A +AL                S      VAA+  G++    I++    E     
Sbjct: 126 ILAINAASMALC-------------LSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESS 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +      T    ++ ++   +     +D     +    D+  D+IK Q++ +S
Sbjct: 173 LQLTVCATKE-RVMMIEAGGDEIP--EDTMINAIKFGFDKCQDIIKFQEEAVS 222


>gi|145637206|ref|ZP_01792868.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           PittHH]
 gi|145269651|gb|EDK09592.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           PittHH]
          Length = 709

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   +  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q++     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD   ++     +E    +++   A +     +   +I+  K+
Sbjct: 176 LVVAGTDKAVLMV---ESEADVLTEEQMLAAVVFGHQQQQVVIEAIKE 220


>gi|209877665|ref|XP_002140274.1| 3' exoribonuclease protein [Cryptosporidium muris RN66]
 gi|209555880|gb|EEA05925.1| 3' exoribonuclease protein, putative [Cryptosporidium muris RN66]
          Length = 295

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 88/258 (34%), Gaps = 31/258 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R  N++R I++        +GS     G T +L T    +     +       +T
Sbjct: 45  IRNDSRIPNEVRPINIKTGTVATCDGSAYFSIGRTRVLCTINGPKLTKSSLNEIGLS-VT 103

Query: 61  AEYGMLPRSTGNRVKREAVSGRQ--GGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDC 116
            +Y + P     R              +++E      + + ++S++         I    
Sbjct: 104 VDYRLSPFCKKMRQYGNINKSNLNTDYKAEEKYQSLTLEKVIQSIICREKYTRMSIDCYI 163

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
            +I+ DG   +AAI+   +AL D    +    +   +  +         C  +    I+D
Sbjct: 164 YIIEDDGCALSAAISCLSLALCDAKIEIIGLFSSVTVIAIPNNSEVKSDCKYI---CILD 220

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVE------------VQGSAERATFSQDHFFAML-NLA 223
             Y E        N    ++ +I E            V  SA+ + F       ++ +LA
Sbjct: 221 PTYDE-------INL---ENSNISELSIGLCTLRNQVVHLSAKGSAFGDIQTSKLMFSLA 270

Query: 224 KDRIADLIKLQKDVISNE 241
           +     +    K+ + +E
Sbjct: 271 EAACTAITNEMKEHLISE 288


>gi|123966596|ref|YP_001011677.1| polynucleotide phosphorylase/polyadenylase [Prochlorococcus marinus
           str. MIT 9515]
 gi|187610313|sp|A2BXQ9|PNP_PROM5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123200962|gb|ABM72570.1| polyribonucleotide nucleotidyltransferase [Prochlorococcus marinus
           str. MIT 9515]
          Length = 721

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 97/238 (40%), Gaps = 36/238 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66
           REI LT    +  A G+ +++ GDT LL TAT   K            +  +Y       
Sbjct: 13  REIRLTTGLYAPQANGAVMIECGDTSLLVTATKTNK----KEAADFLPLICDYEEKLYAA 68

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----AD 122
            R  G  ++RE   GR   R+  I R+I R +R +  +      QI+  C  +     AD
Sbjct: 69  GRIPGGFMRRE---GRPPERATLIARLIDRPMRPLFPIWMRDEIQIVASCLSLDERVPAD 125

Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
                 A+TGA +A                      G +AA+  G+L    I++  Y E 
Sbjct: 126 ----VLAVTGASLA-------------TLLGEIPFYGPMAAVRVGLLGDDFILNPSYREI 168

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
              D+D     +  G IV ++  A +   S+      ++   + + +LIK Q++++ +
Sbjct: 169 EKGDLDIIVAGSPEG-IVMIEAGANQ--LSEQDTIEAIDFGYEAVTELIKAQENLLKD 223



 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 91/251 (36%), Gaps = 31/251 (12%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R+ GR  +++R+IS    +  K   GS + + G T +L+T TL    P   +       +
Sbjct: 323 RVDGRDLDEVRKISAKAGILPKRVHGSAVFQRGLTQVLSTTTL--GTPSDAQEMDDLNPS 380

Query: 61  AE------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
            E      Y   P S G          R+ G       +  RA+  V+         + +
Sbjct: 381 TEKTYLHHYNFPPYSVGETRPMRTPGRREIGHG----ALAERAIIPVLPGKETFPYVLRV 436

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V+ ++G T   ++ G+ ++L D                 LK  V+  + G++     
Sbjct: 437 VSEVLSSNGSTSMGSVCGSTLSLLDAGV-------------PLKAPVSGTAMGLIKEGKE 483

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T+ G I  +Q   +            +  A+     +
Sbjct: 484 VRILTDIQGIEDFLGDMDFKVAGTEKG-ITALQMDMKITGLPVSIISDAIKKARPARLHI 542

Query: 231 IKLQKDVISNE 241
           ++  +D I   
Sbjct: 543 LEKMQDAIDKP 553


>gi|229844934|ref|ZP_04465071.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           6P18H1]
 gi|229812068|gb|EEP47760.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           6P18H1]
          Length = 709

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   +  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       + R+I R +R +         Q++     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLLARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD   ++     +E    +++   A +     +   +I+  K+
Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVIEAIKE 220


>gi|219119866|ref|XP_002180684.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408157|gb|EEC48092.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 830

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 90/247 (36%), Gaps = 16/247 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           +R  GR    +R++++   +     GS L   G+T  + T TL           +  T  
Sbjct: 389 LRCDGRGPTDIRQLTMETGLLPRVHGSALFTRGETQCVATTTLGGSGMRQKIEKLDGTDE 448

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P   G   +  A   R+ G       +  RAL   +   A     I ++ 
Sbjct: 449 KRFYLQYTFPPSCVGETGRVGAPGRREVGHG----NLAERALIPTIPALADFPYTIRVES 504

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL--KGHVAAISCGMLCGYPI 174
            + ++ G +  A++ G  +AL D    ++       +  +L  KG V+  +  +     +
Sbjct: 505 LITESHGSSSMASVCGGSLALMDAGVPIKAPVAGIAMGMLLGDKGGVSDENAVI-----L 559

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED+   +D      D   I   Q   +    + +   + L  A+     L+   
Sbjct: 560 SDILGTEDALGTMDFKVA-GDRVGISTFQLDIKCEGLTLETMESALEQARTGRLHLLSEM 618

Query: 235 KDVISNE 241
           + VI++ 
Sbjct: 619 EKVIASP 625



 Score = 58.6 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 77/230 (33%), Gaps = 36/230 (15%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA--------EY 63
            I +      + A G+  +  GD+ L  T +         ++ K               +
Sbjct: 89  PICIETGKIGRQAAGAVTLTRGDSVLYATTS-------HDKDPKEEIDFCPLSVDYQERF 141

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
                ++G   KR+   GR         R+I R LR ++        Q++    V+  DG
Sbjct: 142 SSAGLTSGGYNKRD---GRPAEHEILTCRLIDRPLRPLIQSGWRHETQLL--SWVLSYDG 196

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYGED 182
                          D L  +   S+ F     L   VAA+  GM   G  +V+    + 
Sbjct: 197 ERSC-----------DPLAIIASASSLFISDVPLHKPVAAVQVGMKDDGTLVVNPTNLQM 245

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            T  ++     T+   ++ ++G+A+     +      +    + I  L +
Sbjct: 246 ETSKLNLMVAGTEEA-VLMIEGAAD--FLPESTMIQAVKTGHEAIQVLCQ 292


>gi|148827370|ref|YP_001292123.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           PittGG]
 gi|187610273|sp|A5UG34|PNP_HAEIG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148718612|gb|ABQ99739.1| polynucleotide phosphorylase [Haemophilus influenzae PittGG]
          Length = 709

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   +  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 75/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q++     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A+  G +    +++    E     +D
Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAVRVGFIDNQFVLNPTMAEQKQSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD   ++     +E    +++   A +     +   +I+  K+
Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVIEAIKE 220


>gi|153814912|ref|ZP_01967580.1| hypothetical protein RUMTOR_01127 [Ruminococcus torques ATCC 27756]
 gi|317500424|ref|ZP_07958648.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331089569|ref|ZP_08338468.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145847943|gb|EDK24861.1| hypothetical protein RUMTOR_01127 [Ruminococcus torques ATCC 27756]
 gi|316898179|gb|EFV20226.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330404937|gb|EGG84475.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 695

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 84/250 (33%), Gaps = 26/250 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
           R  GR  +Q+R ++    +     GS +   G T  + T T          +        
Sbjct: 312 RPDGRAIDQIRPLAAEVDLLPRVHGSAMFTRGQTQ-ICTVTTLAPLSEAQRLDGLDESET 370

Query: 60  TAEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           T  Y M   +  +    E    R  G R      +  RAL  V+   A     I    + 
Sbjct: 371 TKRY-MHHYNFPSYSVGETKPSRGPGRREIGHGALAERALLPVLPSEAEFPYAIRTVSET 429

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY------ 172
            +++G T  A++  + ++L                   +K  VA IS G++ G       
Sbjct: 430 FESNGSTSQASVCASSMSLMTAGV-------------PIKAAVAGISAGLVTGDTDDDYL 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI- 231
            + D+   ED   D+D     T  G I  +Q   +    ++      ++  K     +I 
Sbjct: 477 VLTDIQGLEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAISATKKARTYIID 535

Query: 232 KLQKDVISNE 241
           ++    IS  
Sbjct: 536 EIMNKAISEP 545



 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 77/226 (34%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    V+K A G+ L+ +GDT +L T+T      + +  +  + ++       G +
Sbjct: 12  RTLRVDVDRVAKQANGAVLMHYGDTTVLCTSTASEKPRDGIDFFPLSVEYNERLYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 72  P---GGFNKRE---GKASENAILTDRVIDRPMRPLFPKDYRNDVTLENLVMSVDQDCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA +A                      G ++    G++ G  + +    +    D
Sbjct: 126 LTAMLGASLA-------------TSISDIPFDGPISTTQVGLIDGEFVFNPTAAQREVSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +D     +  A +    +I 
Sbjct: 173 LALTVASTKE-KVIMIEAGANEVP--EDRMIEAIFAAHELNQKVIA 215


>gi|18310662|ref|NP_562596.1| polynucleotide phosphorylase/polyadenylase [Clostridium perfringens
           str. 13]
 gi|168214487|ref|ZP_02640112.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           CPE str. F4969]
 gi|81766989|sp|Q8XJS4|PNP_CLOPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|18145343|dbj|BAB81386.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           str. 13]
 gi|170714049|gb|EDT26231.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           CPE str. F4969]
          Length = 702

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 88/241 (36%), Gaps = 16/241 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R  GR  +Q+R I     +     G+ L   G T ++T ATL    E ++   I   +  
Sbjct: 312 RPDGRAFDQVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISEIQILDGIGEEESK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  RAL  ++   A     I +  +
Sbjct: 372 RYMHHYNFPAYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSEAEFPYTIRLVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A++ G+ +AL D    ++  +    +  +        S  +     + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLI-------TSKDLTEEEVLTDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   +    S+      +  A+     ++   K+ 
Sbjct: 481 QGLEDFFGDMDFKVAGTEEG-ITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKEC 539

Query: 238 I 238
           I
Sbjct: 540 I 540



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 84/233 (36%), Gaps = 27/233 (11%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + +        ++ + L+ +GDT +LT         E +  +  + ++       G +
Sbjct: 12  RPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYEERLYSVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R I R LR +         Q++     ++ D    
Sbjct: 72  P---GGFIKRE---GKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDNLPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI  A +AL                S      VAA+  G++    I++    E     
Sbjct: 126 ILAINAASMALC-------------LSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESS 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +      T    ++ ++   +     +D     +    D+  D+IK Q++ +S
Sbjct: 173 LQLTVCATKE-RVMMIEAGGDEIP--EDTMINAIKFGFDKCQDIIKFQEEAVS 222


>gi|116515160|ref|YP_802789.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
           str. Cc (Cinara cedri)]
 gi|122285444|sp|Q057K3|PNP_BUCCC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116257014|gb|ABJ90696.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
           Cc (Cinara cedri)]
          Length = 693

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 95/246 (38%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           +R+ GR  N++R+I +   +     GS L   G+T  L +ATL           +   + 
Sbjct: 315 LRIDGRINNEVRKIDVRTGILPRVHGSALFTRGETQALVSATLGTSRDAQNLDDLLGDRT 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      +   R+ G      ++  R+  +V+         I +  
Sbjct: 375 DNFLFHYNFPPYSVGEIGIVGSPKRREIGHG----KLAKRSFLAVMPNIEDFPYTIRLVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++ +++G +  A++ GA +AL D                 +K  +A I+ G++       
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGV-------------PIKSAIAGIAMGLIKENDSYI 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     +  G I  +Q   + +  + D   + L  AK     ++ 
Sbjct: 478 ILSDILGDEDYLGDMDFKVSGSRLG-ITALQMDIKVSGITSDIIRSALYQAKSARLKILD 536

Query: 233 LQKDVI 238
           + ++ +
Sbjct: 537 IMENTL 542



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 71/225 (31%), Gaps = 27/225 (12%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
            I L   V  + A  S L    DT +L T     T       +     +   T   G +P
Sbjct: 15  NIILETGVIARQATASVLASMDDTTVLITIVSDNTTIPGQKFFPLVVNYQERTYAAGRIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR       I R+I R +R +     L   QII     +        
Sbjct: 75  ---GGFFRRE---GRPSENEILISRLIDRPIRPLFPKDFLYEVQIIATVISVNPQINPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            +I G+  AL                     G + A   G L    I++    +     +
Sbjct: 129 ISIIGSSAALCLSGL-------------PFLGPIGAARIGFLNNKYILNPSIEKIKKSSL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           D     T +  I  V+  AE +  S+D+    +    +    LI 
Sbjct: 176 DLVVSGTKN-TIFMVE--AEASILSEDNILNAILFGHESQQSLID 217


>gi|254416087|ref|ZP_05029842.1| 3' exoribonuclease family, domain 2 [Microcoleus chthonoplastes PCC
           7420]
 gi|196177020|gb|EDX72029.1| 3' exoribonuclease family, domain 2 [Microcoleus chthonoplastes PCC
           7420]
          Length = 715

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 91/251 (36%), Gaps = 29/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----T 54
           +R+ GR+ +++R +S    +      GS L   G T +L+T TL       + +      
Sbjct: 322 VRVDGRKLDEVRPVSCQVGLLPSRVHGSGLFNRGLTQVLSTVTLGTPGDAQMLDDLNPEE 381

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +  ++   Y   P S G      +   R+ G       +  RA+  ++         I +
Sbjct: 382 EKRYLH-HYNFPPFSVGETKPMRSPGRREIGHG----ALAERAIIPILPPQNEFPYVIRV 436

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V+ ++G T   ++ G+ +AL D                 +   V+  + G++     
Sbjct: 437 VSEVLSSNGSTSMGSVCGSTLALMDAGV-------------PITKPVSGAAMGLIKEGDE 483

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     TDSG I  +Q   +      +     +  AK     +
Sbjct: 484 VRILTDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLPMETVAKAIEQAKPARLHI 542

Query: 231 IKLQKDVISNE 241
           ++     I   
Sbjct: 543 LEKMLAAIDKP 553



 Score = 92.1 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 88/233 (37%), Gaps = 26/233 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           R+I L   +    A GS L++ GDT +L TAT     E +        +       G +P
Sbjct: 13  RDIRLRAGLLAPQAGGSVLIESGDTAVLVTATRSAGREGIDFLPLLVDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   GR   +     R+I R LR +         QI+     +        
Sbjct: 73  ---GGFLRRE---GRPPEKVTLTSRLIDRPLRPLFPSWLRDDIQIVATTLSMDEQVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA VA+                     G +AA+  G++    I++  Y E    D+
Sbjct: 127 LAVTGASVAVLQAQI-------------PFYGPMAAVRVGLVGDDFIINPTYREIDNGDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     +  G ++ V+  A +    +      +    + + DLI  Q++++  
Sbjct: 174 DLVVAGSPQG-VIMVEAGANQ--LPERDIIEAIEFGYEAVQDLIAAQENLLKE 223


>gi|86131670|ref|ZP_01050268.1| polyribonucleotide nucleotidyltransferase [Dokdonia donghaensis
           MED134]
 gi|85818115|gb|EAQ39283.1| polyribonucleotide nucleotidyltransferase [Dokdonia donghaensis
           MED134]
          Length = 742

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 82/243 (33%), Gaps = 18/243 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKH 56
           +RL GRQ   +R I           GS +   G+T  L T TL             +   
Sbjct: 317 LRLDGRQTVDIRPIWCETDYLPSVHGSAVFTRGETQALATVTLGTSRDANQIDMPSHEGE 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P  TG        S R+ G       +  R L+ +V         + +  
Sbjct: 377 ERFYLHYNFPPFCTGEARPIRGTSRREVGHG----NLAQRGLKGMVPDD--CPYTVRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V++++G +  A +    +A+ D    M    +   +     G ++    G      + D
Sbjct: 431 EVLESNGSSSMATVCAGTMAMMDAGIQMTKPVSGIAM-----GLISDAETGKYA--VLSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T+ G I   Q   +    S +     L  A+     +++   D
Sbjct: 484 ILGDEDHLGDMDFKVTGTEDG-ITACQMDIKVKGLSYEILVNALQQARAGRLHILEKLTD 542

Query: 237 VIS 239
            I+
Sbjct: 543 TIA 545



 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 75/227 (33%), Gaps = 26/227 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           REIS+      K A GS +V+ G   +L T       + V        +    A  G  P
Sbjct: 16  REISIETGKLAKQAHGSVVVQSGKCMMLCTVVSNYESKDVDFLPLTVDYREKFAAAGRYP 75

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KREA        +    R++ R LR +         Q++I       D     
Sbjct: 76  ---GGFFKREARPSDGEVLTM---RLVDRVLRPLFPKDYHSETQVMIQLMSHDDD----- 124

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                    + D +  +   +         +  ++    G + G  I++    +    D+
Sbjct: 125 --------VMPDAMAGLAASAAIQLSDFPFECAISEARVGRVNGEFIINPTRAQLEESDI 176

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D   +   +  ++ V+G  E    S++     +  A + I    + Q
Sbjct: 177 DM-MIGASAESVMMVEG--EMDEISEEEMADAIKFAHEHIKVQCEAQ 220


>gi|160915053|ref|ZP_02077266.1| hypothetical protein EUBDOL_01061 [Eubacterium dolichum DSM 3991]
 gi|158432852|gb|EDP11141.1| hypothetical protein EUBDOL_01061 [Eubacterium dolichum DSM 3991]
          Length = 735

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 89/251 (35%), Gaps = 28/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56
           +R  GR+ +++R +     +     GS +   G+T +L+  TL       I +     + 
Sbjct: 330 VRPDGRKIDEIRPLDSQVDLLPRVHGSAMFTRGETQVLSVTTLGAMNDNQIIDDVTEVES 389

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +     G  G R      +  RAL  V+         I    
Sbjct: 390 KRFMHHYNFPPYSVGETGR----MGSPGRREIGHGALGERALAQVLPSVEEFPYTIRTVA 445

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G +  A+I    ++L                   +K  VA I+ G++       
Sbjct: 446 EVLESNGSSSQASICAGTMSLMAAGV-------------PIKAPVAGIAMGLIMDESSSN 492

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G I  +Q   +    ++D F   L  AK     +
Sbjct: 493 YTVLTDIQGMEDHFGDMDFKVAGTSEG-ITALQMDIKVTGITEDIFREALAQAKVARGQI 551

Query: 231 IKLQKDVISNE 241
           ++     IS  
Sbjct: 552 LENMLAAISEP 562



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 29/231 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R I++    ++K A GS LV++GDT +L+ AT     +E +  +             G +
Sbjct: 24  RGITVETGEIAKQAGGSVLVRYGDTVVLSAATASKQAKEGIDFFPLTVSFEEKLYSVGKI 83

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  ++RE   GR    +    RMI R +R +         Q++     +  D  T 
Sbjct: 84  P---GGFLRRE---GRPSEHATLTARMIDRPIRPLFADGFRNEVQVVNTVLSVDQDCSTE 137

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA +AL                     G +A +  G + G  +++    +    D
Sbjct: 138 MAAMFGASLALC-------------VSDIPFNGPIAGVIVGRINGEYVINPTPAQMEESD 184

Query: 187 VDANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +      T  + ++VE    A     +++     +    + I  L+  Q++
Sbjct: 185 IHLTVAGTKYAVNMVE----AGAKEVNEEAMLGAIMFGHEHIKQLVAFQEE 231


>gi|16272192|ref|NP_438401.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           Rd KW20]
 gi|1172546|sp|P44584|PNP_HAEIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|1573193|gb|AAC21898.1| polynucleotide phosphorylase (pnp) [Haemophilus influenzae Rd KW20]
          Length = 709

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   +  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q++     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD   ++     +E    +++   A +     +   +++  K+
Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVVEAIKE 220


>gi|160947658|ref|ZP_02094825.1| hypothetical protein PEPMIC_01593 [Parvimonas micra ATCC 33270]
 gi|158446792|gb|EDP23787.1| hypothetical protein PEPMIC_01593 [Parvimonas micra ATCC 33270]
          Length = 702

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 96/251 (38%), Gaps = 28/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R   R+ +++R+IS  R +     GS L   G T +LT     A  E +V   + +   
Sbjct: 311 IRPDDRELDEVRKISCERGLLPRTHGSGLFTRGQTQVLTLTTLGAPGEVQVLDGVIDEDD 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G+     +   R+ G       +  RAL  V+         + +  
Sbjct: 371 KRYMHQYNFPPFSVGDVRPLRSPGRREIGHG----ALAERALVPVLPSEEEFPYTMRLVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V+ ++G +  A+I G+ ++L D                 +K  VA I+ G++       
Sbjct: 427 EVLSSNGSSSQASICGSTLSLLDAGV-------------PIKDSVAGIAMGLIKDEKTNK 473

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G I  +Q   +    S++     L  AK     +
Sbjct: 474 IAILTDIQGLEDHFGDMDFKVAGTKDG-ITALQMDIKIDGISREILATALEKAKRARLHI 532

Query: 231 IKLQKDVISNE 241
           + +  D I+  
Sbjct: 533 LSIMNDCIATP 543



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 85/224 (37%), Gaps = 27/224 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           RE+ +T   V++ A GSCLV+ G+T +L  A       E V  +  +          G +
Sbjct: 12  RELKVTIGKVAEQANGSCLVQCGETVVLVNACASKEPREGVDFFPLSCDFEEKLYSVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   +S    R+I R LR +         Q+I     ++ D    
Sbjct: 72  P---GGFIKRE---GRPSEKSILTSRLIDRPLRPLFPEGYRNDVQVIATALSVEQDNQPD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +AL                     G   +++ G + G  +++    +     
Sbjct: 126 ILAMIGSSIAL-------------TISDIPFNGPTGSVNVGYVDGEYVINPTIAQREKSR 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           ++     T    I+ V+  A+    S++     +  A + I  +
Sbjct: 173 LNITVSGTKDA-IMMVEAGAD--ILSEEEVLNAILFAHEEIKSI 213


>gi|291557792|emb|CBL34909.1| polyribonucleotide nucleotidyltransferase [Eubacterium siraeum
           V10Sc8a]
          Length = 705

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 80/221 (36%), Gaps = 26/221 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  ++MR ++    +     GS L   G T ++T  TL           I   +  
Sbjct: 316 RVDGRGMDEMRPLAAEVGLLPRVHGSGLFTRGQTQVMTITTLGPVSDSQKLDGIDEEETK 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G        S   G R      +  RAL  V+         I +  +
Sbjct: 376 RYMHHYNFPAYSVGETK----ASRGPGRREIGHGALAQRALEPVIPPVEEFPYAIRLVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           V+ ++G T  A+I G+ ++L D                 +K  VA ISCG++        
Sbjct: 432 VLSSNGSTSQASICGSTLSLMDAGV-------------PIKSPVAGISCGLITEGDRWMT 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
           +VD+   ED   D+D     T  G I  +Q   +    + +
Sbjct: 479 MVDIQGLEDFFGDMDFKVGGTHKG-ITAIQMDLKIDGLTPE 518



 Score = 79.4 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 83/235 (35%), Gaps = 32/235 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           RE+ +    V   A GSC V +G+T ++   T      E V  +     +       G +
Sbjct: 15  RELMVETGKVCGLANGSCWVHYGETVVMVNVTASAKPREGVDFFPLAVDYEEKLYAVGKI 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   ++    R++ R +R +          I++    +  +    
Sbjct: 75  P---GGYLKRE---GRPSEKAILNSRVVDRPMRPLFPKDMRNDVAIVMTVLAVDPETQPE 128

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA +A+                     G +  IS G++ G  ++  D  + +  D
Sbjct: 129 IIAMIGASIAVS-------------ISDIPWNGPIGGISVGLVDGEIVLMPDAKQRAKSD 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD-----LIKLQKD 236
           +      ++   +V ++  A       D     +    + I       + ++Q +
Sbjct: 176 LQLTVASSEK-KVVMIEAGANE--VDDDTMLKAIMAGHEEINKSLIPFIKQIQAE 227


>gi|291530699|emb|CBK96284.1| polyribonucleotide nucleotidyltransferase [Eubacterium siraeum
           70/3]
          Length = 705

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 80/221 (36%), Gaps = 26/221 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  ++MR ++    +     GS L   G T ++T  TL           I   +  
Sbjct: 316 RVDGRGMDEMRPLAAEVGLLPRVHGSGLFTRGQTQVMTITTLGPVSDSQKLDGIDEEETK 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G        S   G R      +  RAL  V+         I +  +
Sbjct: 376 RYMHHYNFPAYSVGETK----ASRGPGRREIGHGALAQRALEPVIPPVEEFPYAIRLVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           V+ ++G T  A+I G+ ++L D                 +K  VA ISCG++        
Sbjct: 432 VLSSNGSTSQASICGSTLSLMDAGV-------------PIKSPVAGISCGLITEGDRWMT 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
           +VD+   ED   D+D     T  G I  +Q   +    + +
Sbjct: 479 MVDIQGLEDFFGDMDFKVGGTHKG-ITAIQMDLKIDGLTPE 518



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 83/235 (35%), Gaps = 32/235 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           RE+ +    V   A GSC V +G+T ++   T      E V  +     +       G +
Sbjct: 15  RELMVETGKVCGLANGSCWVHYGETVVMVNVTASAKPREGVDFFPLAVDYEEKLYAVGKI 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   ++    R++ R +R +          I++    +  +    
Sbjct: 75  P---GGYLKRE---GRPSEKAILNSRVVDRPMRPLFPKDMRNDVAIVMTVLAVDPETQPE 128

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA +A+                     G +  IS G++ G  ++  +  + +  D
Sbjct: 129 IIAMIGASIAVS-------------ISDIPWNGPIGGISVGLVDGEIVLMPNAEQRAKSD 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD-----LIKLQKD 236
           +      ++   +V ++  A       D     +    + I       + ++Q +
Sbjct: 176 LQLTVASSEK-KVVMIEAGANE--VDDDTMLKAIMAGHEEINKSLIPFIKQIQAE 227


>gi|145628545|ref|ZP_01784345.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           22.1-21]
 gi|145639858|ref|ZP_01795459.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           PittII]
 gi|144979015|gb|EDJ88701.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           22.1-21]
 gi|145271076|gb|EDK10992.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           PittII]
 gi|301168898|emb|CBW28492.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           10810]
 gi|309750352|gb|ADO80336.1| Polynucleotide phosphorylase [Haemophilus influenzae R2866]
          Length = 709

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   +  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q++     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD   ++     +E    +++   A +     +   +I+  K+
Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVIEAIKE 220


>gi|299144054|ref|ZP_07037134.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298518539|gb|EFI42278.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 714

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 96/249 (38%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ +++R +S    +     GS L   G T +L+ ATL    + +V   + + K 
Sbjct: 311 IRPDGRKLDEIRHLSSETGILPRTHGSGLFTRGQTQVLSIATLAGLSDVQVIDGLGDDKP 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G+         R+ G       +  +AL  V+         I +  
Sbjct: 371 KRYIHHYNFPPFSVGDTKPMRGPGRREIGHG----ALAEKALLPVIPTEEEFPYAIRVVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V+ ++G +  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 427 EVLSSNGSSSQASVCGSTLALMDAGV-------------PIKAPVAGIAMGLIEENGITK 473

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S++     L  AK    ++++
Sbjct: 474 ILTDIQGLEDHFGDMDFKVAGTKEG-ITAIQMDIKVEGISKEVLAVALERAKKARLEILE 532

Query: 233 LQKDVISNE 241
                IS  
Sbjct: 533 HLNTTISEP 541



 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 83/224 (37%), Gaps = 27/224 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +T   V++ A G+CLV++GDT +L T T      + +  +  +          G +
Sbjct: 12  RTLKVTVGKVAEQANGACLVEYGDTVVLVTVTASKTPRDGIDFFPLSVDFEEKMYAVGKM 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   +S    R+I R +R +         Q++     +  D    
Sbjct: 72  P---GGFIKRE---GKPSEKSILSSRLIDRPIRPLFPEGYRNDVQVVATVLSVDQDCQPD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              + G+ +AL                     G   ++  G + G  IV+    E    D
Sbjct: 126 IVGMIGSSIALS-------------ISDIPFDGPTGSVLVGYVDGKYIVNPTETEREKSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           +      T +  I+ V+  A     S++     +  A + I  +
Sbjct: 173 IYLVVSGTKTA-IMMVEAGA--NIVSEETMLNAILTAHEEIKKI 213


>gi|145631098|ref|ZP_01786873.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           R3021]
 gi|144983383|gb|EDJ90865.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           R3021]
          Length = 709

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   +  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q++     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD   ++     +E    +++   A +     +   +I+  K+
Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVIEAIKE 220


>gi|309972624|gb|ADO95825.1| Polynucleotide phosphorylase [Haemophilus influenzae R2846]
          Length = 709

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   +  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q++     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD   ++     +E    +++   A +     +   +I+  K+
Sbjct: 176 LVVAGTDKAVLMV---ESEADVLTEEQMLAAVVFGHQQQQVVIEAIKE 220


>gi|260580886|ref|ZP_05848711.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           RdAW]
 gi|260092509|gb|EEW76447.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           RdAW]
          Length = 709

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   +  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q++     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD   ++     +E    +++   A +     +   +++  K+
Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVVEAIKE 220


>gi|145640150|ref|ZP_01795734.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           R3021]
 gi|229846318|ref|ZP_04466426.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           7P49H1]
 gi|145274736|gb|EDK14598.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           22.4-21]
 gi|229810411|gb|EEP46129.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           7P49H1]
          Length = 709

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   +  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q++     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD   ++     +E    +++   A +     +   +I+  K+
Sbjct: 176 LVVAGTDKAVLMV---ESEADVLTEEQMLAAVVFGHQQQQVVIEAIKE 220


>gi|119504363|ref|ZP_01626443.1| Polyribonucleotide nucleotidyltransferase [marine gamma
           proteobacterium HTCC2080]
 gi|119459871|gb|EAW40966.1| Polyribonucleotide nucleotidyltransferase [marine gamma
           proteobacterium HTCC2080]
          Length = 714

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I     V   A GS L   G+T  +   TL       I +   G    
Sbjct: 314 RIDGRDGRTVRPIVCEVDVLDKAHGSALFTRGETQAIGAVTLGSSRDAQIIDALEGERRD 373

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +    S R+ G      R+  R L + +         + +  +
Sbjct: 374 PFMLHYNFPPYSVGEAGRIGFTSRREIGHG----RLARRGLAATLPTEEEFPYTVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++    +A+                   +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCVGSLAMMAAGV-------------PVKAPVAGIAMGLVKEGNQFAV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T SG I  +Q   +    ++      L  A      ++  
Sbjct: 477 LTDILGDEDHLGDMDFKVAGT-SGGITALQMDIKIEGINEQIMEIALEQAMQARLHILGQ 535

Query: 234 QKDVIS 239
              V++
Sbjct: 536 MNSVLA 541



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 81/236 (34%), Gaps = 32/236 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
           EI+L    +++ A G+ +V  G+T +L T      +      +  +  +       G +P
Sbjct: 14  EITLETGRIARQASGAVMVTMGNTSVLCTVVAAREMRAGQDFFPLSVHYIEKRYAVGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT-- 125
              G   KREA   R   +     R+I R +R +     +   Q++  C V+ AD  T  
Sbjct: 74  ---GGFFKREA---RPSEKETLTSRLIDRPVRPLFPNGFMNEVQVV--CTVMSADSETDP 125

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDST 184
              A+ G   AL                     G +     G       +++ +Y     
Sbjct: 126 DIPAMIGTSAALA-------------ISGCPFNGPIGGARVGFTEAKGYLLNPNYSALKN 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             +D     T    ++     +E    S+D     +  A   +  +IK   +++  
Sbjct: 173 SQLDMVVAGTSEAVLMV---ESEAQELSEDQMLGAVLFAHQEMQTVIKAISELVEE 225


>gi|68248838|ref|YP_247950.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           86-028NP]
 gi|145635136|ref|ZP_01790841.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           PittAA]
 gi|81336747|sp|Q4QNV7|PNP_HAEI8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|68057037|gb|AAX87290.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           86-028NP]
 gi|145267557|gb|EDK07556.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           PittAA]
          Length = 709

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   +  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q++     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD   ++     +E    +++   A +     +   +I+  K+
Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVIEAVKE 220


>gi|145632472|ref|ZP_01788206.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           3655]
 gi|144986667|gb|EDJ93219.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
           3655]
          Length = 709

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   +  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEDKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q++     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD   ++     +E    +++   A +     +   +++  K+
Sbjct: 176 LVVAGTDKAVLMV---ESEADVLTEEQMLAAVVFGHQQQQVVVEAIKE 220


>gi|167750806|ref|ZP_02422933.1| hypothetical protein EUBSIR_01788 [Eubacterium siraeum DSM 15702]
 gi|167656241|gb|EDS00371.1| hypothetical protein EUBSIR_01788 [Eubacterium siraeum DSM 15702]
          Length = 705

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 80/221 (36%), Gaps = 26/221 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  ++MR ++    +     GS L   G T ++T  TL           I   +  
Sbjct: 316 RVDGRGMDEMRPLAAEVGLLPRVHGSGLFTRGQTQVMTITTLGPVSDSQKLDGIDEEETK 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G        S   G R      +  RAL  V+         I +  +
Sbjct: 376 RYMHHYNFPAYSVGETK----ASRGPGRREIGHGALAQRALEPVIPPVEEFPYAIRLVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           V+ ++G T  A+I G+ ++L D                 +K  VA ISCG++        
Sbjct: 432 VLSSNGSTSQASICGSTLSLMDAGV-------------PIKSPVAGISCGLITEGDRWMT 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
           +VD+   ED   D+D     T  G I  +Q   +    + +
Sbjct: 479 MVDIQGLEDFFGDMDFKVGGTHKG-ITAIQMDLKIDGLTPE 518



 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 83/235 (35%), Gaps = 32/235 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           RE+ +    V   A GSC V +G+T ++   T      E V  +     +       G +
Sbjct: 15  RELMVETGKVCGLANGSCWVHYGETVVMVNVTASAKPREGVDFFPLAVDYEEKLYAVGKI 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   ++    R++ R +R +          I++    +  +    
Sbjct: 75  P---GGYLKRE---GRPSEKAILNSRVVDRPMRPLFPKDMRNDVAIVMTVLAVDPETQPE 128

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA +A+                     G +  IS G++ G  ++  D  + +  D
Sbjct: 129 IIAMIGASIAVS-------------ISDIPWNGPIGGISVGLVDGEIVLMPDAEQRAKSD 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD-----LIKLQKD 236
           +      ++   +V ++  A       D     +    + I       + ++Q +
Sbjct: 176 LQLTVASSEK-KVVMIEAGANE--VDDDTMLKAIMAGHEEINKSLIPFIKQIQAE 227


>gi|221134255|ref|ZP_03560560.1| polynucleotide phosphorylase/polyadenylase [Glaciecola sp.
           HTCC2999]
          Length = 702

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 94/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R + +   V     GS +   G+T  L  ATL  +    + +   G  T+
Sbjct: 314 RIDGRDPAMIRALDVATGVLPRTHGSSVFTRGETQALVAATLGTERDAQMIDELGGTSTS 373

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R +++V+         + +  +
Sbjct: 374 RFMLHYNFPPYCVGETGFIGSPKRREIGHG----RLAKRGIQAVMPSETDFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ G  +AL D                 +K  VA I+ G++     + +
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKSDENFVV 476

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G I  +Q   +    +Q+     L  AK+    ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTTNG-ITALQMDIKIEGITQEIMQIALKQAKEARLHILGV 535

Query: 234 QKDVISNE 241
               I   
Sbjct: 536 MDQAIGGH 543



 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 64/192 (33%), Gaps = 24/192 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + +    DT +L T   +++      +     +T  Y     + G 
Sbjct: 15  VTLETGVVARQATAAVMASMDDTSVLVTVVGKKEA---KADQDFFPLTVNYQEKAYAAGK 71

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR         R+I R +R +   S     QI+I       +  T   
Sbjct: 72  IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPESFKNEVQIVITVVSANPEIPTDII 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G   G  I++  + E +   +D
Sbjct: 129 SLIGTSAALAISGI-------------PFNGPIGAARVGYTNGEYILNTRHSEQAESQLD 175

Query: 189 ANFVMTDSGHIV 200
                T+S  ++
Sbjct: 176 LVVAGTESAVLM 187


>gi|312370650|gb|EFR18995.1| hypothetical protein AND_23239 [Anopheles darlingi]
          Length = 261

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 18/170 (10%)

Query: 16  LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           L   V   A+GS  ++ G+T  + +     ++P   +    G +  ++   P ++  R  
Sbjct: 10  LKVGVVSTAKGSAYIELGNTKAIVSVFDPREIPKQSKYCALGELYCDFKFSPFASHLRKT 69

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
            ++       R + +   +  AL   V      + Q+ +  +V++ DG    A IT A +
Sbjct: 70  PQS-----DTRGRSLAAALASALNPAVCRHLFPNLQLDVFANVLEDDGSVLAAVITAAGL 124

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           AL D    M D              V A + G+L    +VD    E+   
Sbjct: 125 ALADACIPMFDI-------------VTATTAGILGDRILVDPTAEEERLC 161


>gi|157150941|ref|YP_001449663.1| polynucleotide phosphorylase/polyadenylase [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|187611296|sp|A8AV53|PNP_STRGC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157075735|gb|ABV10418.1| polyribonucleotide nucleotidyltransferase [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 728

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 85/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L+ AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALDQAKKARFEILD 538

Query: 233 LQKDVI 238
           L +  I
Sbjct: 539 LIEATI 544



 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT AT+ +K      +     +       G  P
Sbjct: 13  RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R +         Q+I        D   + 
Sbjct: 73  ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S+D     L      + +LI  Q+++++
Sbjct: 174 ELTVAGTKDA-INMVESGAKE--LSEDVMLEALLKGHQAVKELIAFQEEIVA 222


>gi|289804468|ref|ZP_06535097.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 362

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 19  RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 78

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 79  SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 133

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 134 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 180

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 181 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 239

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 240 VMEQAIN 246


>gi|255524222|ref|ZP_05391181.1| Polyribonucleotide nucleotidyltransferase [Clostridium
           carboxidivorans P7]
 gi|296185343|ref|ZP_06853753.1| polyribonucleotide nucleotidyltransferase [Clostridium
           carboxidivorans P7]
 gi|255512047|gb|EET88328.1| Polyribonucleotide nucleotidyltransferase [Clostridium
           carboxidivorans P7]
 gi|296050177|gb|EFG89601.1| polyribonucleotide nucleotidyltransferase [Clostridium
           carboxidivorans P7]
          Length = 709

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 87/238 (36%), Gaps = 18/238 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           R  GR   ++R IS    +     G+ L   G T ++T ATL     + I +     +  
Sbjct: 312 RPDGRGFEEIRPISCEVGLLPRTHGTGLFTRGLTQVMTVATLGALGDVQILDGIGSEEFK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  +AL  ++         I +  +
Sbjct: 372 RYMHHYNFPSYSVGEVRPLRGPGRREIGHG----ALAEKALEPLIPNEDNFPYTIRLVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A++ G+ +AL D    ++  +    +  +    ++           + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLS-------KEKVLTDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
              ED   D+D     T+ G I  +Q   +    S D     L+ A+   A L  L+K
Sbjct: 481 QGIEDFFGDMDFKVAGTEVG-ITAIQFDTKIHGLSNDCIKETLDKARK--ARLFILEK 535



 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 26/216 (12%)

Query: 29  LVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQG 84
           LV +G+T +L  A       E V  +  + ++       G +P   G  +KRE   G+  
Sbjct: 30  LVSYGETVVLINANASEKPREGVDFFPLSIEYEERLYAVGKIP---GGFIKRE---GKPS 83

Query: 85  GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM 144
            ++    R I R LR +         Q++     ++ D      AI GA +AL       
Sbjct: 84  EKAILHARAIDRPLRPLFPKGYRNDVQVVCTVVSVEQDNAPDILAINGASIALS------ 137

Query: 145 EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
                    S      + A+S G++    +++    +     ++     T    ++ V+ 
Sbjct: 138 -------LSSIPFNTPLGAVSVGLVDDEFVINPTLEQRGKSTLNLTVCATKE-RVMMVEA 189

Query: 205 SAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                   +D  +  +    +    ++  Q++ +  
Sbjct: 190 GGSEIP--EDVMYDAIMFGFEECKKIVAFQEEAMEK 223


>gi|261342610|ref|ZP_05970468.1| polyribonucleotide nucleotidyltransferase [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315257|gb|EFC54195.1| polyribonucleotide nucleotidyltransferase [Enterobacter
           cancerogenus ATCC 35316]
          Length = 711

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 97/246 (39%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPEADKFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 536

Query: 234 QKDVIS 239
            +  I+
Sbjct: 537 MEQAIN 542



 Score = 69.0 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 75/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGK 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGGFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQEELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    D+    I ++  L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHDQQQIVIQNINDLVKEA 226


>gi|66809981|ref|XP_638714.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4]
 gi|60467336|gb|EAL65367.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4]
          Length = 237

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 79/241 (32%), Gaps = 26/241 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR EN +R +   +     A+GS       + +L       +V    R  K      
Sbjct: 7   RNDGRCENSIRPVESEQGSLNKADGSAKFSQDKSKVLAAVYGPIEV-NSARKEKILKSYV 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           E    P             G      +E + +I  A+ S++  +     QI +   V   
Sbjct: 66  EVTFTP-----------AFGNTNYIDKEKELLIKNAVESMILTTLYPRTQISVILQVFSD 114

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DG   + AI  A +AL D    M        L            C    G   VD    E
Sbjct: 115 DGSIVSCAINAACLALLDAGIEMNGLLGSVTL------------CFNNDGSIYVDPSTEE 162

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           ++     A +  +     + +  +    T ++D +F  L+ A +    +I   K  + N 
Sbjct: 163 ENQSKAIAIYSFSSINKNIVLSKT--IGTLTEDQYFKGLDKASESCDLIISFIKLAVKNR 220

Query: 242 V 242
           +
Sbjct: 221 I 221


>gi|295397816|ref|ZP_06807881.1| polyribonucleotide nucleotidyltransferase [Aerococcus viridans ATCC
           11563]
 gi|294973951|gb|EFG49713.1| polyribonucleotide nucleotidyltransferase [Aerococcus viridans ATCC
           11563]
          Length = 702

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 90/241 (37%), Gaps = 28/241 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR+ +++R ++    +     GS L   G T  L+ ATL    EE+    +     
Sbjct: 319 VRPDGRKIDEIRPLASEVGLLPRTHGSGLFTRGQTQALSVATLAPLSEEQRIDGLAGDVT 378

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +     G  G R      +  RAL  V+         I +  
Sbjct: 379 QRFMHHYNFPQYSVGSTGR----YGSPGRREIGHGALGYRALNEVLPSEEDFPYAIRLVA 434

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V++++G +  A+I    +AL D                 +K  VA I+ G++       
Sbjct: 435 EVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVAGIAMGLIMDEDEEN 481

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T++G I  +Q   +    ++      L+ A     ++
Sbjct: 482 YTVLTDIQGLEDHLGDMDFKVAGTENG-ITALQMDIKIKGITEQILREALDQAHKARVEI 540

Query: 231 I 231
           +
Sbjct: 541 L 541



 Score = 95.9 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 84/230 (36%), Gaps = 27/230 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R +S+    V+K A  + LV++GDT +LT        +     +     +       G +
Sbjct: 14  RPLSIEYGQVAKQANAAVLVRYGDTVVLTAVVGAKEAKPGQDFFPLQVNYEEKMYSVGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR    +    R+I R +R + D       Q+I     +  D    
Sbjct: 74  P---GGYIKRE---GRPSEHATLTARLIDRPIRPMFDEGFTNEVQVINTVLSVDPDCSPE 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ G+  AL                     G +A ++ G + G  +++    + +  D
Sbjct: 128 MAAMFGSSAAL-------------TISDIPFDGPIAGVNVGRVNGDFVINPTVEQQAQSD 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           ++   V      I  V+ SA  A  S+      L      I +L   Q +
Sbjct: 175 LEL-IVAGSKDAINMVESSA--AELSETEMLEALMFGHTSIRELCYFQDE 221


>gi|254361252|ref|ZP_04977395.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
           PHL213]
 gi|153092748|gb|EDN73791.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
           PHL213]
          Length = 716

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 93/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS L   G+T  L  ATL  +        +   K  
Sbjct: 314 RIDGRTVDTVRALDICTSVLPRTHGSALFTRGETQALAVATLGTERDAQIIDELTGEKSD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHG----RLAKRGVLAVMPTAEEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRTG-VTALQMDIKIEGITPEIMRIALNQAKGARMHILGV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 69.0 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 27/232 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQERTYAAGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+I     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                TD   ++     +E    +++   A +    ++   +I+  K+ +  
Sbjct: 176 LVVSGTDKAVLMV---ESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKE 224


>gi|296104878|ref|YP_003615024.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059337|gb|ADF64075.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 712

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 99/246 (40%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       I +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQIIDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDADKFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 536

Query: 234 QKDVIS 239
            +  I+
Sbjct: 537 MEQAIN 542



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 76/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGK 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGGFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQEELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    D+    I ++ +L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHDQQQVVIQNINELVKEA 226


>gi|261492523|ref|ZP_05989076.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496798|ref|ZP_05993172.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261307545|gb|EEY08874.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311682|gb|EEY12832.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 716

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 93/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS L   G+T  L  ATL  +        +   K  
Sbjct: 314 RIDGRTVDTVRALDICTSVLPRTHGSALFTRGETQALAVATLGTERDAQIIDELTGEKSD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 374 RFLFHYNFPPYSVGETGRIGSPKRREIGHG----RLAKRGVLAVMPTAEEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRTG-VTALQMDIKIEGITPEIMRIALNQAKGARMHILGV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 27/232 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQERTYAAGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+I     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                TD   ++     +E    +++   A +    ++   +I+  K+ +  
Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHEQQQVVIENLKEFVKE 224


>gi|22536387|ref|NP_687238.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           agalactiae 2603V/R]
 gi|81455352|sp|Q8E1Z8|PNP_STRA5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|22533214|gb|AAM99110.1|AE014201_8 polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           2603V/R]
          Length = 709

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 84/249 (33%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 IRPDGRRVDEIRPLDAEIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEAQIIDGLTPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +  A   R+ G       +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPRLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEALAQAKKARFEILD 538

Query: 233 LQKDVISNE 241
           +    I+  
Sbjct: 539 VLHGAIAEP 547



 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 26/230 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
           ++ +    V+K A GS +V++GD+ +LT A + +K      +     +       G  P 
Sbjct: 14  KLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR    +    R+I R +R +         Q+I        +     A
Sbjct: 73  --GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDENASAPMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +    + G  I++    E     ++
Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                T    I  V+  A+    S++     L    + + +LI  Q++++
Sbjct: 175 LTVAGTKEA-INMVESGAKE--LSEEIMLEALLKGHEAVCELIAFQEEIV 221


>gi|283836290|ref|ZP_06356031.1| polyribonucleotide nucleotidyltransferase [Citrobacter youngae ATCC
           29220]
 gi|291067653|gb|EFE05762.1| polyribonucleotide nucleotidyltransferase [Citrobacter youngae ATCC
           29220]
          Length = 710

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 97/247 (39%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTRDAQSLDELMGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P   G      +   R+ G      R+  R + +V+ DL       + +  
Sbjct: 375 NFLFHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDLDKFP-YTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     + 
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFV 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 536 VMEQAIN 542



 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALTLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I  + +L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQAINELAKEA 226


>gi|325577639|ref|ZP_08147914.1| polyribonucleotide nucleotidyltransferase [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160384|gb|EGC72510.1| polyribonucleotide nucleotidyltransferase [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 712

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   +  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKGARMHILGV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q++     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD   ++     +E    +++   A +     +   +I+  K+
Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVIEAIKE 220


>gi|301154832|emb|CBW14295.1| polynucleotide phosphorylase/polyadenylase [Haemophilus
           parainfluenzae T3T1]
          Length = 712

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   +  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKGARMHILGV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 73/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLEIGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q++     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G   AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGTSAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD   ++     +E    +++   A +     +   +I+  K+
Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVIEAIKE 220


>gi|110799658|ref|YP_696367.1| polynucleotide phosphorylase/polyadenylase [Clostridium perfringens
           ATCC 13124]
 gi|168211432|ref|ZP_02637057.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           B str. ATCC 3626]
 gi|123344675|sp|Q0TPS3|PNP_CLOP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110674305|gb|ABG83292.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           ATCC 13124]
 gi|170710551|gb|EDT22733.1| polyribonucleotide nucleotidyltransferase [Clostridium perfringens
           B str. ATCC 3626]
          Length = 702

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 88/241 (36%), Gaps = 16/241 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R  GR  +++R I     +     G+ L   G T ++T ATL    E ++   I   +  
Sbjct: 312 RPDGRAFDEVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISEIQILDGIGEEESK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  RAL  ++   A     I +  +
Sbjct: 372 RYMHHYNFPAYSVGEVRPLRGPGRREIGHG----ALAERALEPLIPSEAKFPYTIRLVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A++ G+ +AL D    ++  +    +  +        S  +     + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLI-------TSKDLTEEEVLTDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   +    S+      +  A+     ++   K+ 
Sbjct: 481 QGLEDFFGDMDFKVAGTEEG-ITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKEC 539

Query: 238 I 238
           I
Sbjct: 540 I 540



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 84/233 (36%), Gaps = 27/233 (11%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + +        ++ + L+ +GDT +LT         E +  +  + ++       G +
Sbjct: 12  RPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVEYEERLYSVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R I R LR +         Q++     ++ D    
Sbjct: 72  P---GGFIKRE---GKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVENDNLPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI  A +AL                S      VAA+  G++    I++    E     
Sbjct: 126 ILAINAASMALC-------------LSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESS 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +      T    ++ ++   +     +D     +    D+  D+IK Q++ +S
Sbjct: 173 LQLTVCATKE-RVMMIEAGGDEIP--EDTMINAIKFGFDKCQDIIKFQEEAVS 222


>gi|291542944|emb|CBL16054.1| polyribonucleotide nucleotidyltransferase [Ruminococcus bromii
           L2-63]
          Length = 739

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 85/228 (37%), Gaps = 28/228 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----TKH 56
           R+ GR  + +R ++    V     GS +   G T +LT ATL       + +     T+ 
Sbjct: 320 RVDGRGMDDIRPLASEVGVIPRVHGSGMFTRGQTQVLTIATLGPVSDKQLLDGIDGETEK 379

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            +I   Y     S G          R+ G       +  RAL  V+         + +  
Sbjct: 380 RYIH-HYNFPSYSVGETKPSRGPGRREIGHG----ALAERALVPVIPSVEEFPYALRLVS 434

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V+ ++G T   +I G+ +AL D                 +K  VA ISCG++       
Sbjct: 435 EVLSSNGSTSQGSICGSTLALMDAGV-------------PIKAPVAGISCGLITEGDRWM 481

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
            +VD+   ED   D+D     T  G I  +Q   + +  + +     L
Sbjct: 482 TMVDIQGLEDFFGDMDFKVAGTHDG-ITAIQMDLKISGLTPEMVKEAL 528



 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 75/225 (33%), Gaps = 27/225 (12%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +        A G+CLV +GDT +    T      E V  +  +  +       G +
Sbjct: 20  RPLKVETGKMTQLANGACLVHYGDTTVHVAVTASEKPREGVDFFPLSVDYEEKMYAVGKI 79

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P S   R       GR   ++    R+I R +R + D S      I+     +  D    
Sbjct: 80  PGSYLKR------EGRPSEKAILTSRVIDRPIRPLFDKSMRNDVSIVCTVMSVDPDCQPE 133

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA +A+                     G ++  S GM+ G  I++    +     
Sbjct: 134 IVAMIGASIAIS-------------ISDVPWNGPISGCSVGMIDGEYIINPTEEQRKVSQ 180

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           +      T +  I  ++  A     S D  +  +    +    +I
Sbjct: 181 MATTVASTST-RIAMIEAGA--NCVSDDDMYNAIMAGHEANQKII 222


>gi|146313236|ref|YP_001178310.1| polynucleotide phosphorylase/polyadenylase [Enterobacter sp. 638]
 gi|187610301|sp|A4WEX9|PNP_ENT38 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145320112|gb|ABP62259.1| Polyribonucleotide nucleotidyltransferase [Enterobacter sp. 638]
          Length = 711

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 97/246 (39%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGDRTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 375 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPEADKFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSREG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 536

Query: 234 QKDVIS 239
            +  I+
Sbjct: 537 MEQAIN 542



 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 75/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKP---GQDFFPLTVNYQERTYAAGK 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGGFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFINEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + +   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGL-------------PFNGPIGSARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++  L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQIVIENIKDLVKEA 226


>gi|303286137|ref|XP_003062358.1| 3' exoribonuclease [Micromonas pusilla CCMP1545]
 gi|226455875|gb|EEH53177.1| 3' exoribonuclease [Micromonas pusilla CCMP1545]
          Length = 301

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 94/264 (35%), Gaps = 47/264 (17%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   + R++S+   V   A+GS LVK G T  L  A LE            G +  
Sbjct: 24  RPDGRPLARARDVSVANGVVTSADGSALVKIGRTTALAAAKLEPAP-PEPTAPDVGVVEV 82

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSR------QII 113
              + P    +     A  GR    SQ   R I   LR  +VVDL  L  +      ++ 
Sbjct: 83  TVELPPMCAAS-----ARPGRPTEESQRCARRIEDVLRDANVVDLRKLCIKRGVYAWRVC 137

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-------------------- 153
           +D  V+  DGG   AA+     AL D      D  ++ +L                    
Sbjct: 138 VDVYVLDHDGGILDAALCAVVGALKDAKVPRVDVDDRGKLVWGGGERERRPGDADADADA 197

Query: 154 -------------SQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIV 200
                           +  H  +++ G   G  +VD ++ E++ ++   + VM + G +V
Sbjct: 198 NGDGDASTSAAACVVDVASHPLSLTIGQYDGKLVVDPNFEEEALMESVVSVVMREDGDLV 257

Query: 201 EVQGSAERATFSQDHFFAMLNLAK 224
            V         S+      +  A+
Sbjct: 258 CVSKPGGTREASESTLIKCIAAAR 281


>gi|28210966|ref|NP_781910.1| polynucleotide phosphorylase/polyadenylase [Clostridium tetani E88]
 gi|75542500|sp|Q895J3|PNP_CLOTE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|28203405|gb|AAO35847.1| polyribonucleotide nucleotidyltransferase [Clostridium tetani E88]
          Length = 705

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 89/244 (36%), Gaps = 16/244 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           R   R  +++R+IS    +     G+ L   G T ++T AT+     + I ++    +  
Sbjct: 312 RPDERAFDEIRKISCEVGLLPRTHGTGLFTRGLTQVMTAATIGPLADVQILDSIEDEEFK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  +AL  ++         I +  +
Sbjct: 372 RYMHHYNFPSYSVGETRPLRGPGRREIGHG----ALAEKALEPLIPSEEDFPYTIRLVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A++ G+ +AL D    ++  +    +  V    +            + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLVTNDDLT-------EEKILTDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G I  +Q   + +  S +     L  AKD    ++   K+ 
Sbjct: 481 QGIEDFFGDMDFKVAGTEKG-ITALQVDTKISGLSDNCIKETLIKAKDARMYILGKIKEC 539

Query: 238 ISNE 241
           I   
Sbjct: 540 IPEH 543



 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 82/215 (38%), Gaps = 26/215 (12%)

Query: 29  LVKFGDTHLL--TTAT--LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQG 84
           LV +GDT +L    A+    + +  +  + ++       G +P   G  +KRE   GR  
Sbjct: 30  LVSYGDTVVLINANASKEPRDGIDFFPLSVEYEERLYSVGKIP---GGFIKRE---GRPT 83

Query: 85  GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM 144
             +    R I R LR +         QI+     +++D      A+ GA +AL       
Sbjct: 84  ENAILHARAIDRPLRPLFPKGYRNDVQIVCTVLSVESDNQPDILAMNGASLALC------ 137

Query: 145 EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
                    S      VA +S G++ G  I++    +     ++     T    ++ ++ 
Sbjct: 138 -------LSSIPFTTPVANVSVGLINGDFILNPTQSQREESILNLTVSATKE-RVMMIEA 189

Query: 205 SAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            AE     +D  +  +    ++   +++ Q++ + 
Sbjct: 190 GAEE--VDEDTMYNAIRFGFEQCQKIVEFQEEAMR 222


>gi|332226543|ref|XP_003262449.1| PREDICTED: LOW QUALITY PROTEIN: polyribonucleotide
           nucleotidyltransferase 1, mitochondrial-like [Nomascus
           leucogenys]
          Length = 778

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 80/213 (37%), Gaps = 19/213 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R +S    + K   GS L + G T +L T T +        ++V   I  
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 417

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   ++ R+ G       +  +AL  V+         I 
Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHG----ALAEKALYPVIPRDF--PFTIR 471

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+  G  +AL D    +        +  V K        G +  Y 
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDSGVPISSPVAGVAVGLVTKTDPEK---GEIEDYR 528

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
           ++ D+   ED   D+D     T+ G I  +Q  
Sbjct: 529 LLTDILGIEDYNGDMDFKIAGTNKG-ITALQAD 560



 Score = 81.3 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 27/203 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R++ ++     ++A+GS +V+ GDT ++ TA   T             +    A  G +P
Sbjct: 54  RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
               N ++RE  +     +     R+I R++R +         Q++  C+++  DG    
Sbjct: 114 ---TNYLRREIGT---SDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNEP 165

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI GA VAL                     G V A+  G++ G  +V+    E S+ 
Sbjct: 166 DVLAINGASVALS-------------LSDIPWNGPVGAVRIGIIDGECVVNPTRKEMSSS 212

Query: 186 DVDANFVMTDSGHIVEVQGSAER 208
            ++          IV ++ SAE 
Sbjct: 213 TLNLVVAGAPKSQIVMLEASAEN 235


>gi|91205588|ref|YP_537943.1| polynucleotide phosphorylase/polyadenylase [Rickettsia bellii
           RML369-C]
 gi|157827302|ref|YP_001496366.1| polynucleotide phosphorylase/polyadenylase [Rickettsia bellii OSU
           85-389]
 gi|122425576|sp|Q1RIG0|PNP_RICBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611279|sp|A8GWV2|PNP_RICB8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|91069132|gb|ABE04854.1| Polyribonucleotide nucleotidyltransferase [Rickettsia bellii
           RML369-C]
 gi|157802606|gb|ABV79329.1| polynucleotide phosphorylase/polyadenylase [Rickettsia bellii OSU
           85-389]
          Length = 744

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 91/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R+I+    +   A GS L   G+T  L ++T    +   I ++  G    
Sbjct: 316 RIDGRTTTDIRQITCEVGLLPCAHGSALFTRGETQSLVSSTFGTSLDEQIIDSLEGEYKE 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S    +  +A   R+ G      ++  RA+  V+         I +  +
Sbjct: 376 RFMLNYIFPPYSVNEAMPMKAPGRREVGHG----KLAWRAVNPVLPTKTQFPYSIRVVAE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
             +++G +  A + G+ +AL                   +K  VA I+ G++        
Sbjct: 432 TTESNGSSSMATVCGSSLALMYAGV-------------PIKAPVAGIAMGLVKEDEKFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    + +     L  A+     +++ 
Sbjct: 479 LSDILGDEDYFGDMDFKVAGTSEG-ITALQMDIKIRGVNFEIMKIALEQARLGRLHILEQ 537

Query: 234 QKDVISNE 241
              VIS  
Sbjct: 538 MNKVISKP 545



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 84/223 (37%), Gaps = 30/223 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTT----ATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           +++ A+G+  VK G++ LL T    A  +E +  +     +  +    G +P   G   K
Sbjct: 23  IARQADGAVTVKMGNSVLLCTAVTAAKAKEGIGFFPLTINYREMAYAAGKIP---GGFFK 79

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--RTAAITGA 133
           RE   G+   R   + R+I R +R +   + +      + C V+  D  T     AI GA
Sbjct: 80  RE---GKASDREVLVSRLIDRPIRPLFHPAFVNET--FVTCTVLSYDPETPVDILAIIGA 134

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
             AL                       VAA   G++ G   +        T  +D     
Sbjct: 135 SAALS-------------LSPAPYLEIVAASKVGLINGEFFLHPTLDLLKTSQLDLVVAG 181

Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           T+   ++ V+  +E    S++   A +    D    ++ + K+
Sbjct: 182 TND-SVMMVE--SEAHLLSEEQMLAAVKFGFDSFQPVVNIIKE 221


>gi|261749590|ref|YP_003257276.1| polynucleotide phosphorylase/polyadenylase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497683|gb|ACX84133.1| polynucleotide phosphorylase/polyadenylase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 710

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 93/247 (37%), Gaps = 29/247 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +RL GR+  Q+R I           GS L   G+T  LTT TL   +     +       
Sbjct: 323 IRLDGRKSQQIRPIWSIVDYLPEVHGSALFSRGETQSLTTVTLGSSLDANKIDNVIMENQ 382

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG       VS R+ G       +  RAL++V+  +      I +  
Sbjct: 383 EKFYLHYNFPPFSTGEIRPIRGVSRREIGHG----NLAQRALKNVIPDN--NPYTIRVVS 436

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           D+++++G +  A +  A +AL D    +E               V+ IS G+        
Sbjct: 437 DILESNGSSSMATVCAASLALMDAGIAIE-------------NPVSGISMGLFTDKEKKV 483

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER-ATFSQDHFFAMLNLAKDRIADLI 231
            + D+   ED   ++D     T +G I   Q   ++    + D    +L  A +    ++
Sbjct: 484 ILSDIMGEEDGFGELDFKITGTKNG-ITACQMDVKKIQGLTNDLLSQILMQALEGRLFIL 542

Query: 232 KLQKDVI 238
           K   + +
Sbjct: 543 KKMLETL 549



 Score = 85.1 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 88/233 (37%), Gaps = 27/233 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHGWITAEYGMLP 67
            I +    +++ A+G+ +V+  +T LL T  + +++   I        +    +  G +P
Sbjct: 16  PIVIETGKIARQADGAAIVRAKNTILLATVVVSKEIKNEINFLPLTVDYREKYSASGKIP 75

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR         R++ R LR     S     QI+I   ++  D     
Sbjct: 76  ---GGFIKRE---GRPSDEEILTMRLVDRVLRPTFSESFRNEIQIMIS--LLSYD----- 122

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                    L D L  +   +          G ++ I    + G  I++    +    D+
Sbjct: 123 ------KTVLPDELAGLAASTALSVAGIPFNGPISEIRIIRVNGKFIINPSLDQLEKADI 176

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D   V      I+ ++G  E    ++  F   +N+A + I   I+ QK ++  
Sbjct: 177 DL-IVGASEHSIIMIEG--EMKEITEKEFLKAINIAHNAIKPQIEAQKKLVKK 226


>gi|293391608|ref|ZP_06635942.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952142|gb|EFE02261.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 743

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 92/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +    I +   G    
Sbjct: 348 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERSD 407

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 408 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPTLAEFPYVVRVVSE 463

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 464 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEDKFVV 510

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 511 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITAEIMQIALNQAKSARMHILGV 569

Query: 234 QKDVI 238
            +  I
Sbjct: 570 MEQAI 574



 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 78/232 (33%), Gaps = 27/232 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 49  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGRIP- 107

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q++     +         
Sbjct: 108 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 162

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E     +D
Sbjct: 163 AMIGASAALS-------------LSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQSRLD 209

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                TD   ++     +E    +++   A +     +   +I+  K++++ 
Sbjct: 210 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAE 258


>gi|260910888|ref|ZP_05917531.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260634996|gb|EEX53043.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 741

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 95/242 (39%), Gaps = 28/242 (11%)

Query: 3   LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       IS+    V+K A+GS +V+ G+T LL T    ++ VP            
Sbjct: 11  PDGRT------ISIETGKVAKQADGSAVVRMGNTVLLATVCAAKDAVPGTDFMPLQVDYR 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y    R  G   KRE   G+ G       R++ R LR +   +     ++ ++  ++ 
Sbjct: 65  EQYSAAGRFPGGFTKRE---GKPGDNEILTSRLVDRVLRPLFPSN--YHAEVYVNVMLLS 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           V   D L  +   S           +++ +    + G  +V+  + 
Sbjct: 120 ADG-----------VDQPDALAGLAASSAMACSDIPFDFYISEVRVARVNGEYVVNPTFE 168

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +    D+D     T   +I+ V+G  E    ++      L +A + I  +  +Q++ ++ 
Sbjct: 169 QMKEADMDIMVGATKD-NIMMVEG--EMDEVTEQDLIQALKVAHEAIKPMCTMQEE-LAK 224

Query: 241 EV 242
           E+
Sbjct: 225 EL 226



 Score = 98.6 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 89/250 (35%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGWI 59
           RL GR+ +++R I           GS +   G+T  L+T TL  K+   + +      ++
Sbjct: 325 RLDGRKTDEIRPIWCEVNSLPMPHGSAIFTRGETQSLSTCTLGTKLDEKMVDDVLDKSYM 384

Query: 60  T--AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  R L+  +         + +   
Sbjct: 385 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRGLKGQIPAD--YPYTVRVVSQ 438

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 LK  V+ I+ G++        
Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGV-------------PLKKPVSGIAMGLIKNPGEEKY 485

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G +   Q   +    S +     L  AK     ++
Sbjct: 486 AILSDILGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHIL 544

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 545 GKLTETIAEP 554


>gi|254466440|ref|ZP_05079851.1| 3' exoribonuclease family, domain 2 [Rhodobacterales bacterium Y4I]
 gi|206687348|gb|EDZ47830.1| 3' exoribonuclease family, domain 2 [Rhodobacterales bacterium Y4I]
          Length = 703

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 93/248 (37%), Gaps = 27/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R+I     +     GS L   G+T  L   TL         +  HG   +
Sbjct: 310 RIDGRDTTTVRQIVAETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFKS 369

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RAL++V+         I +  +
Sbjct: 370 NFLLHYNFPPYSVGEVGR----VGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSE 425

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGY-- 172
           + +++G +  A++ G  +++ D                 LK  VA ++ G++    G   
Sbjct: 426 ITESNGSSSMASVCGGSLSMMDAGV-------------PLKAPVAGVAMGLILEDDGSYA 472

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T++G I  +Q   + A  + +     L  AKD    ++ 
Sbjct: 473 VLTDILGDEDHLGDMDFKVAGTENG-ITSLQMDIKVAGITPEIMEKALAQAKDGRLHILN 531

Query: 233 LQKDVISN 240
                +S 
Sbjct: 532 EMGKALSE 539



 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 80/234 (34%), Gaps = 39/234 (16%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70
           ++L    V++ A+GS +   G+T ++   T   +            +T  Y     +   
Sbjct: 8   LTLETGKVARQADGSVIATLGETSVMANVTFARQQKP---GQDFFPLTVHYQEKYYAAGK 64

Query: 71  --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +         ++++ C V+  D      
Sbjct: 65  VPGGFFKREA---RPTEKETLTARLIDRPIRPLFVPGF--KNEVLVMCTVLSHDLVNDPD 119

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                     G +A    G + G  +++     D   D
Sbjct: 120 IVAMIAASAALTISGA-------------PFMGPIAGARVGFVDGEYVLNPTV--DDMQD 164

Query: 187 VDAN-------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +  N        V      ++ V+  +E    ++      +N A ++I  +I L
Sbjct: 165 LRLNPEQRLDLVVAGTKNAVMMVE--SEAYELTEAEMLGAVNFAHEQIQPVIDL 216


>gi|329768891|ref|ZP_08260319.1| polyribonucleotide nucleotidyltransferase [Gemella sanguinis M325]
 gi|328837254|gb|EGF86891.1| polyribonucleotide nucleotidyltransferase [Gemella sanguinis M325]
          Length = 618

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 86/247 (34%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR   ++R ++    V     GS L   G T  L   TL    +E++   +   ++
Sbjct: 318 VRPDGRALTEIRPLASRIDVLPRTHGSALFTRGQTQSLGVVTLGNLSDEQIIDDLTQEEN 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RAL  V+         I I  
Sbjct: 378 KRFMLHYNFPAFSVGEVGFSRAPGRREIGHG----ALGERALAQVIPSKEDFPYTIRIVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++++++G +  A I    +AL                   +K  VA I+ G++       
Sbjct: 434 EILESNGSSSQATICSGSMALMAAGV-------------PIKAQVAGIAMGLVKKDEHYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S+      L  A+     ++ 
Sbjct: 481 ILTDIQGMEDHLGDMDFKVAGTTDG-ITALQMDIKIDGLSEQILKESLEQARIGRLQILD 539

Query: 233 LQKDVIS 239
              + IS
Sbjct: 540 HMNETIS 546



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 87/222 (39%), Gaps = 25/222 (11%)

Query: 22  KYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78
           + A  + +VK+GDT +LTTA   ++   V  +     +       G +P   G  ++RE 
Sbjct: 26  RQANAAVVVKYGDTVVLTTAVASKEAKDVDFFPLTVNYEEKMYAVGKIP---GGFLRRE- 81

Query: 79  VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138
             GR G  +    R+I R +R + +       Q+I     ++ D     AA+        
Sbjct: 82  --GRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLSVEYDCDPVMAAML------- 132

Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH 198
                     +    +   KG +A ++ G + G  I++ +  +    ++D     T S  
Sbjct: 133 ------GSSLSLSVSNIPFKGPIAGVTVGYIDGEYIINPNIEQLEKSEIDLKVAGT-SDA 185

Query: 199 IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           I  V+  A+    S++     +    + I  LI  Q+ ++  
Sbjct: 186 INMVEAGAKE--VSEEIMLNAIMFGHEEIKRLIAFQQQIVEE 225


>gi|327404361|ref|YP_004345199.1| polyribonucleotide nucleotidyltransferase [Fluviicola taffensis DSM
           16823]
 gi|327319869|gb|AEA44361.1| Polyribonucleotide nucleotidyltransferase [Fluviicola taffensis DSM
           16823]
          Length = 719

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 85/233 (36%), Gaps = 28/233 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           RL GR+ +++R I           GS +   G+T  LTT TL  K+   + +        
Sbjct: 319 RLDGRKFDEIRPIWAEVDYLPMVHGSAVFTRGETQSLTTLTLGGKMDEQLIDGVTFHGTE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG        S R+ G       +  RAL+ V+      +  I +  D
Sbjct: 379 KFLLHYNFPPFSTGEAKPLRGTSRREIGHG----NLALRALKPVLPAD--NAYTIRLVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 433 ILESNGSSSMATVCAGTLALMDGGVQ-------------IKAPVSGIAMGLVADEGKFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           + D+   ED   D+D     T  G I   Q   +      +     L+ A+  
Sbjct: 480 LSDILGDEDHLGDMDFKVTGTSKG-ITACQMDIKVDGLPYEVLIQALDQARAG 531



 Score = 96.7 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 83/228 (36%), Gaps = 29/228 (12%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           EIS+      K A+GS +++ G+T LL T       ++ V        +    A  G  P
Sbjct: 15  EISIETGKLAKQADGSVVLQMGNTVLLATVVAAPEAKDGVDFLPLTVDYREKYAAAGRFP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +REA   R       + R++ RALR +         Q++I   ++  DG    
Sbjct: 75  ---GGFFRREA---RPSETEILVMRLVDRALRPLFPDDYHAEVQLMI--QLLSYDG---- 122

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                  V   D L  +   +          G ++ +  G + G  IV+    E  + D+
Sbjct: 123 -------VNNPDALCGLAASAAIAVSDIPFNGPMSEVRVGRINGEWIVNPSMEEMKSADI 175

Query: 188 DANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D     T    +++E     E    S+      + +A   I +  + Q
Sbjct: 176 DMMVAGTMKDVNMIE----GEFQEISELEMVEAIKIAHAAIKEQCQFQ 219


>gi|330791335|ref|XP_003283749.1| hypothetical protein DICPUDRAFT_85962 [Dictyostelium purpureum]
 gi|325086372|gb|EGC39763.1| hypothetical protein DICPUDRAFT_85962 [Dictyostelium purpureum]
          Length = 233

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 84/243 (34%), Gaps = 25/243 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL+GR + Q+R +   + +   A+GS       T +L       +V    R  K      
Sbjct: 9   RLNGRTQGQLRSMESEQSLLNKADGSAKFSQNKTSVLAAVYGPIEV-NSARKEKILKSYV 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           E    P             G      +E + ++  A+ SV+  +     Q+ +   V   
Sbjct: 68  EVTFTP-----------ALGNTTYLDKEKELLVKNAVESVILTTLHPRTQVSVIIQVYSD 116

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI-VDLDYG 180
           DG   + +I  A +AL D    M        L                    + VD D  
Sbjct: 117 DGSIVSCSINAACLALLDAGIEMNGLIGSITLMNEDDDE-------DNNKCLMIVDPDLN 169

Query: 181 EDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           E++     A F   ++S +IV    S    T ++D +F  L  A+     +I   K  + 
Sbjct: 170 EENNSKAMAIFAFSSNSNNIV---MSKTIGTLTEDQYFECLKAAR-GCDSIIAYMKLAVK 225

Query: 240 NEV 242
           N +
Sbjct: 226 NRI 228


>gi|261868717|ref|YP_003256639.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414049|gb|ACX83420.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 743

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 92/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +    I +   G    
Sbjct: 348 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERSD 407

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 408 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPTLAEFPYVVRVVSE 463

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 464 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEDKFVV 510

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 511 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITAEIMQIALNQAKSARMHILGV 569

Query: 234 QKDVI 238
            +  I
Sbjct: 570 MEQAI 574



 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 78/232 (33%), Gaps = 27/232 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 49  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGRIP- 107

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q++     +         
Sbjct: 108 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 162

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    E     +D
Sbjct: 163 AMIGASAALS-------------LSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQSRLD 209

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                TD   ++     +E    +++   A +     +   +I+  K++++ 
Sbjct: 210 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAE 258


>gi|296273302|ref|YP_003655933.1| polyribonucleotide nucleotidyltransferase [Arcobacter nitrofigilis
           DSM 7299]
 gi|296097476|gb|ADG93426.1| polyribonucleotide nucleotidyltransferase [Arcobacter nitrofigilis
           DSM 7299]
          Length = 725

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 88/247 (35%), Gaps = 30/247 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNT 54
           +R  GR    +R IS+   +   A  SCL   G+T  L  ATL       +      ++T
Sbjct: 334 VRADGRGLKTVRPISIDTNILPSAHSSCLFTRGETQALVVATLAGAKDGQMFETLNEKST 393

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y     S G       V  R+ G       +  RAL + +D     +  + +
Sbjct: 394 SMENFMVHYNFPGFSVGEAKPMFGVGRRELGHG----NLGKRALEATIDRDF--ADTVRL 447

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             ++++++G +  A + G  +AL                   + G VA ++ GM+     
Sbjct: 448 VSEILESNGSSSMATVCGGSLALKAAGV-------------PISGLVAGVAMGMVVEGDK 494

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D       +G I  +Q   +            L  AK+    +
Sbjct: 495 HCVLTDIMGLEDHDGDMDFKVAGPKTG-ITALQMDIKLGGIELSVLKEALLQAKEGREHI 553

Query: 231 IKLQKDV 237
           + L ++ 
Sbjct: 554 LTLMEEA 560



 Score = 75.1 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 78/232 (33%), Gaps = 42/232 (18%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST----GNRVK 75
           V+K A GS L K G+  +L T   E   P    +     +T +Y     +     G   K
Sbjct: 21  VAKQANGSVLAKCGNAVILATVVSEFDNPG---SEDFTPLTVQYIEKAYAAAKIPGGFFK 77

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE+   +         R+I R+LR +     +    I +   V+ AD             
Sbjct: 78  RES---KPSELETLTSRIIDRSLRPLFPKGYVYPTTITV--MVLSADKDVD--------- 123

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
                L      +  +  +  +K  VA +    + G  IV+ +  +     +D  +V   
Sbjct: 124 --LQTLALNAASAALYTSNIPVKKSVAGVRIAKIDGEYIVNPNVTDMVNSTLDL-YVAGS 180

Query: 196 SGHIVEVQGSA------------------ERATFSQDHFFAMLNLAKDRIAD 229
              ++ ++  A                  +    +++     +++A+  + +
Sbjct: 181 KDELLMIEMRAISSEDMVEVDIEAFSKIHKTNEMTEEELVEAISIAQIALKE 232


>gi|312865445|ref|ZP_07725672.1| polyribonucleotide nucleotidyltransferase [Streptococcus downei
           F0415]
 gi|311098963|gb|EFQ57180.1| polyribonucleotide nucleotidyltransferase [Streptococcus downei
           F0415]
          Length = 825

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 87/246 (35%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GRQ +++R +           GS L   G T  L+  TL    E K+   +     
Sbjct: 317 IRPDGRQVDEIRPLEAEVDFLPQVHGSGLFTRGQTQALSVLTLAPMSESKIVDGLDPEYR 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSFEDFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + +  + +     L  AK    +++ 
Sbjct: 480 ILTDIQGLEDHFGDMDFKVAGTRQG-ITALQMDIKISGITPEILKEALAQAKKARYEILD 538

Query: 233 LQKDVI 238
           L +  I
Sbjct: 539 LIEQTI 544



 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 86/232 (37%), Gaps = 26/232 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM---WIRNTKHGWITAEYGMLPR 68
            + +    V+K A G+ +V +GD+ +L  AT+ +K+     +     +       G  P 
Sbjct: 14  PLVVEIGQVAKQANGAAVVHYGDSTVLCAATMSKKMARTDFFPLQVNYEEKMYAAGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR    +    R+I R +R +         Q+I        D     A
Sbjct: 73  --GGFMKRE---GRPSADATLTARLIDRPIRPLFAQGFRNEVQVINTVLSYDPDASAPMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+  + +AL                    +G +A +    L G  I++    +    ++D
Sbjct: 128 AMFASSLALC-------------ISDIPFEGPIAGVQVAYLDGEFIINPTAQQKEASNLD 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                T    I  V+  A+    S+D     L      I +LI  Q+++++ 
Sbjct: 175 LTVAGTKDA-INMVESGAQE--LSEDIMLEALLKGHQAIQELIAFQEEIVAT 223


>gi|22299736|ref|NP_682983.1| polynucleotide phosphorylase/polyadenylase [Thermosynechococcus
           elongatus BP-1]
 gi|81742443|sp|Q8DGW9|PNP_THEEB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|22295920|dbj|BAC09745.1| polyribonucleotide nucleotidyltransferase [Thermosynechococcus
           elongatus BP-1]
          Length = 715

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 86/250 (34%), Gaps = 27/250 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTK 55
           +R+ GR+ +++R I     V      GS L   G T +++  TL           +    
Sbjct: 322 VRVDGRRLDEVRPIWCEVGVLPERVHGSALFNRGLTQVMSVTTLGSPADAQALDDLHPED 381

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P S G      +   R+ G       +  RAL  V+         I + 
Sbjct: 382 SKRYLHHYNFPPYSVGEVKPLRSPGRREIGHG----ALAERALEPVLPPKEEFPYVIRVV 437

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V+ +DG T   ++ G+ ++L D                 ++  V+  + G++      
Sbjct: 438 SEVLSSDGSTSMGSVCGSTLSLMDAGV-------------PIRKPVSGAAMGLIKEGNEV 484

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     TDSG I  +Q   +            +  A+     ++
Sbjct: 485 RILTDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLPVAVIQQAIEQARPARLHIL 543

Query: 232 KLQKDVISNE 241
           +    V+   
Sbjct: 544 EKMLAVLDKP 553



 Score = 94.8 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 91/233 (39%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           R+I +  +  +  A GS L+  G+T +L TA      E +        +       G +P
Sbjct: 13  RDIKVVLQKFAPQAAGSILISSGETAVLVTANRAAAREGIDFLPLVVDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   GR   ++  I R+I R LR +         Q++     +  +     
Sbjct: 73  ---GGFLRRE---GRPPEKAILIGRLIDRPLRPLFPQWLRDDLQVVATTVSLDENAPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA +A+                     G +AA+  G++    +++  Y E     +
Sbjct: 127 LAVTGASIAVLLAQI-------------PFNGPMAAVRVGLVGDEFVINPTYKEIERGGL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     +  G +V V+  A      +      ++ A + I DLI+ Q+D++  
Sbjct: 174 DLVVAGSPDG-VVMVEAGANE--LPEADMIEAIDFAYEVIRDLIQAQRDLLKE 223


>gi|332708787|ref|ZP_08428758.1| polyribonucleotide nucleotidyltransferase [Lyngbya majuscula 3L]
 gi|332352329|gb|EGJ31898.1| polyribonucleotide nucleotidyltransferase [Lyngbya majuscula 3L]
          Length = 716

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 89/247 (36%), Gaps = 27/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMW----IRNTK 55
           +R+ GR+ +Q+R +S    +      GS L   G T +L+T TL           +    
Sbjct: 323 VRVDGRKLDQVRPVSCQTSLLPQRVHGSALFNRGLTQVLSTVTLGTPGDAQTLDDLNPED 382

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P S G      +   R+ G       +  RAL  V+         I + 
Sbjct: 383 EKRYLHHYNFPPFSVGEVKPLRSPGRREIGHG----ALAERALVPVLPPQHEFPYVIRVV 438

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V+ ++G T   ++ G+ +AL D                 +   V+  + G++      
Sbjct: 439 SEVLSSNGSTSMGSVCGSTLALMD-------------SGVPITKPVSGAAMGLIKEGDEV 485

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     TD+G I  +Q   +    S D     +  AK     ++
Sbjct: 486 RILTDIQGIEDFLGDMDFKVAGTDTG-ITALQMDMKITGLSMDTIAQAIEQAKPARLHIL 544

Query: 232 KLQKDVI 238
           +    VI
Sbjct: 545 EKMLAVI 551



 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 26/233 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           R+I L   +    + GS +++ GDT +L TAT     E +        +       G +P
Sbjct: 13  RDIRLKVGLLAPQSGGSVMIQSGDTAVLVTATRAPGREGIDFLPLVVDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   GR   +     R+I R LR +         QI+     +        
Sbjct: 73  ---GGFLRRE---GRPPEKVILTSRLIDRPLRPLFPSWLRDDIQIVATTLSMDEQVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA +A+              Q S    G +AA+  G+L    +++  Y E    D+
Sbjct: 127 LAVTGASIAV-------------LQGSIPFYGPMAAVRVGLLGDDFMINPTYKEIENGDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     +  G ++ V+  A +    +      ++   + + DLIK Q D++  
Sbjct: 174 DLVVAGSPQG-VIMVEAGANQ--LPEQDIIEAIDFGYEAVQDLIKAQHDLLEE 223


>gi|288959704|ref|YP_003450045.1| polyribonucleotide nucleotidyltransferase [Azospirillum sp. B510]
 gi|288912012|dbj|BAI73501.1| polyribonucleotide nucleotidyltransferase [Azospirillum sp. B510]
          Length = 711

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 18/241 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I     V   A GS L   G+T  L   TL       I +   G    
Sbjct: 321 RIDGRDTKTVRPIVSEVGVLPRAHGSALFTRGETQALVVTTLGTSQDEQIIDALEGEYRE 380

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++         + +  +
Sbjct: 381 HFMLHYNFPPYSVGEAGR----MGSPGRREIGHGKLAWRAIHPLLPKKEDFPYTLRVVSE 436

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V +++G +  A + G  ++L D    +        +  + + H  A+         + D+
Sbjct: 437 VTESNGSSSMATVCGTSLSLMDAGAPLARPVAGIAMGLIKEDHGFAV---------LSDI 487

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T+ G +  +Q   +  + +++     L  AKD    ++      
Sbjct: 488 LGDEDHLGDMDFKVAGTEVG-VTALQMDIKITSITEEIMKIALGQAKDGRLHILGEMAKA 546

Query: 238 I 238
           +
Sbjct: 547 L 547



 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 83/240 (34%), Gaps = 46/240 (19%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R++ L    +++ A G+ LV +GDT +L TA      +  V  +     +       G +
Sbjct: 22  RKLVLETGKIARQANGAVLVTYGDTTVLCTAVAAKAPKPGVDFFPLTVNYQEKAFAAGKI 81

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR   +   + R+I R +R +         Q+I  C V+  D    
Sbjct: 82  P---GGFFKRE---GRPTEKETLVSRLIDRPIRPLFADGFRNETQVI--CTVLSHDLEND 133

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++ GA  AL                     G + A   G   G  I++    +   
Sbjct: 134 PDIVSMVGASAALTISGI-------------PFLGPIGAARVGYKNGQYILNPTMDQVED 180

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM---------------LNLAKDRIAD 229
            D+D     T  G ++     +E    +++                    ++LA++   +
Sbjct: 181 TDLDLVVAGTTEGVLMV---ESEAKELTEEVMLGAVMFGHSNFQPVINMIIDLAEEAAKE 237


>gi|221060204|ref|XP_002260747.1| exosome complex exonuclease rrp41 homolog [Plasmodium knowlesi
           strain H]
 gi|193810821|emb|CAQ42719.1| exosome complex exonuclease rrp41 homolog,putative [Plasmodium
           knowlesi strain H]
          Length = 246

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 95/238 (39%), Gaps = 27/238 (11%)

Query: 2   RLSGRQENQMREISLTRR---VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           RL GR+E++ R I +      +   A+G    + G+T LL+      ++    ++ +   
Sbjct: 13  RLDGRKEDECRLIKINVGNENIFTDADGFAFYEIGNTKLLSYIQGPTEL---KKSEEKCS 69

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           I  E  + P +       +     +   + EI   I     +++ L    + +I I   +
Sbjct: 70  IKCEVFLSPFNVYE----KKKKKTKDSVTNEISAYIRNICENIILLDLYKNSEINIFLYI 125

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           I+ DGG + AAI    +AL D                 +K  ++A S   L    +VD +
Sbjct: 126 IERDGGVKHAAINTCILALIDAGIA-------------IKYFISACSVLYLQNRILVDGN 172

Query: 179 YGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
             E ++   +   V+  ++  I+ ++  AE      D F AM+    D   +L  + K
Sbjct: 173 QLEINSGAPELTMVIELNTHKIILLEFDAE---VPIDIFEAMVRTCMDCCVNLGNVMK 227


>gi|551833|gb|AAA83905.1| polynucleotide phosphorilase [Escherichia coli]
          Length = 711

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 99/247 (40%), Gaps = 28/247 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLRTARDAQVLDELMGERTD 374

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +A  D                 +K  VA I+ G++     Y 
Sbjct: 430 EITESNGSSSMASVCGASLASMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 476

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++ D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ 
Sbjct: 477 VLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535

Query: 233 LQKDVIS 239
           + +  I+
Sbjct: 536 VMEQAIN 542



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I ++ +L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226


>gi|197287234|ref|YP_002153106.1| polynucleotide phosphorylase/polyadenylase [Proteus mirabilis
           HI4320]
 gi|227357072|ref|ZP_03841442.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis ATCC
           29906]
 gi|226702677|sp|B4F2C3|PNP_PROMH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|194684721|emb|CAR46710.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis
           HI4320]
 gi|227162764|gb|EEI47727.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis ATCC
           29906]
          Length = 709

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   +     GS L   G+T  L TATL           I      
Sbjct: 315 RIDGREKDMVRALDIRTGLLPRTHGSALFTRGETQALVTATLGTARDAQTIDDIMGEHTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 375 TFLLHYNFPPYSVGETGMMGSPKRREIGHG----RLAKRGVLAVMPTIEEFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKESVAGIAMGLVKEGENFVV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G +  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRNG-VSALQMDIKIEGITREIMQVALNQAKSARLHILGV 536

Query: 234 QKDVISNE 241
            +  IS  
Sbjct: 537 MESAISQP 544



 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 19/150 (12%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  +RE   GR G     I R+I R LR +     L   Q++     +         A+
Sbjct: 75  GSFFRRE---GRPGEGETLIARLIDRPLRPLFPEGFLNEIQVVATVVSVNPQVNPDIVAM 131

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  AL                     G +     G + G  +++    E     +D  
Sbjct: 132 IGASAALS-------------LSGVPFNGPIGGARVGFIDGQYVLNPTVDELKISKLDLV 178

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAML 220
              T +G ++ V+  +E    S++     +
Sbjct: 179 VAGT-AGAVLMVE--SEADLLSEEQMLGAV 205


>gi|24213647|ref|NP_711128.1| polynucleotide phosphorylase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45658536|ref|YP_002622.1| polynucleotide phosphorylase/polyadenylase [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|81406860|sp|Q72NX7|PNP_LEPIC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81470924|sp|Q8F7J8|PNP_LEPIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|24194449|gb|AAN48146.1| polynucleotide phosphorylase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45601779|gb|AAS71259.1| polyribonucleotide nucleotidyltransferase [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 698

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 82/228 (35%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           I L     +K A G+ + K G+  LL T    ++            +T EY     S G 
Sbjct: 14  IVLETGSWAKQAHGAVVYKSGNLVLLATVCAADEA---KEGQDFFPLTCEYTEKLYSVGR 70

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KREA   +       I R+I R +R +         Q+ +   V+ ADG    A
Sbjct: 71  FPGGYFKREA---KPPEHEILISRIIDRPIRPLFPEGYFCEVQLQV--QVLSADGDVSVA 125

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
                              +          G +A    G + G  I++    E    D+D
Sbjct: 126 GH-----------ALNAASAALAVSDIPFNGPIAGARIGRVNGELILNPTTKEILNSDLD 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T + HIV ++G A+    S +   A L  A+  IA+ + LQ++
Sbjct: 175 LVVAGTKT-HIVMIEGEAKE--LSNEEMIAALRFAQKHIAEFVTLQEE 219



 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 88/248 (35%), Gaps = 27/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R  GR+ +++R IS+         GS +   G T  L   TL           +   K  
Sbjct: 314 RFDGRKLDEIRSISVEINPLPGPHGSAVFTRGQTQSLGVVTLGTGSDNQRYETLEGQKEK 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G  V+R +  GR   R      +  RAL+ V+         I +  +
Sbjct: 374 SFMLHYNFPAFSVGE-VRRSSGPGR---REIGHGNLAERALKLVLPKPDEFPYVIRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           +++++G +  A++    +AL                   ++G V+ I+ G+         
Sbjct: 430 ILESNGSSSMASVCSGSLALMAAGV-------------PIQGSVSGIAMGLFSDSSGKYA 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I   Q   +    S D   ++   A+     ++ 
Sbjct: 477 VLSDIAGLEDHFGDMDCKIAGTRKG-ITAFQMDLKVTGVSFDVLESVFEQAQRGRFHILD 535

Query: 233 LQKDVISN 240
           + +  IS 
Sbjct: 536 IMEKHISK 543


>gi|288929802|ref|ZP_06423645.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288328903|gb|EFC67491.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 742

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 95/242 (39%), Gaps = 28/242 (11%)

Query: 3   LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       IS+    V+K A+GS +V+ G+T LL T    ++ VP            
Sbjct: 11  PDGRT------ISIETGKVAKQADGSAVVRMGNTVLLATVCAAKDAVPGTDFMPLQVDYR 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y    R  G   KRE   G+ G       R++ R LR +   +     ++ ++  ++ 
Sbjct: 65  EQYSAAGRFPGGFTKRE---GKPGDNEILTSRLVDRVLRPLFPSN--YHAEVYVNVMLLS 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           V   D L  +   S           +++ +    + G  +V+  + 
Sbjct: 120 ADG-----------VDQPDALAGLAASSAMACSDIPFDFYISEVRVARVNGEYVVNPTFE 168

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +    D+D     T   +I+ V+G  E    ++      L +A D I  +  +Q++ ++ 
Sbjct: 169 QMKEADMDIMVGATKD-NIMMVEG--EMDEVTEQDLIQALKVAHDAIKPMCTMQEE-LAK 224

Query: 241 EV 242
           E+
Sbjct: 225 EL 226



 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 89/250 (35%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGWI 59
           RL GR+ +++R I           GS +   G+T  L+T TL  K+   + +      ++
Sbjct: 325 RLDGRKTDEIRPIWCEVSSLPMPHGSAIFTRGETQSLSTCTLGTKLDEKMVDDVLDKSYM 384

Query: 60  T--AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  R L+  +         + +   
Sbjct: 385 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRGLKGQIPAD--YPYTVRVVSQ 438

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 LK  V+ I+ G++        
Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGV-------------PLKKPVSGIAMGLIKNPGEEKY 485

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G +   Q   +    S +     L  AK     ++
Sbjct: 486 AILSDILGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHIL 544

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 545 GKLTETIAEP 554


>gi|212634079|ref|YP_002310604.1| polynucleotide phosphorylase/polyadenylase [Shewanella
           piezotolerans WP3]
 gi|226702687|sp|B8CKH8|PNP_SHEPW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|212555563|gb|ACJ28017.1| Polyribonucleotide nucleotidyltransferase [Shewanella piezotolerans
           WP3]
          Length = 701

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 93/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+ + +R +++   V     GS L   G+T  L T TL  +      ++  G  T 
Sbjct: 314 RIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKVDSIMGEYTN 373

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      ++  R + +V+  +      + +  +
Sbjct: 374 RFMLHYNFPPYSVGETGFVGSPKRREIGHG----KLAWRGINAVMPSAEEFPYSVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    ++D     L  A      ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGITKDIMQIALQQAYGARVHILNV 535

Query: 234 QKDVISNE 241
               I + 
Sbjct: 536 MDQAIGSH 543



 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 72/208 (34%), Gaps = 27/208 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A+ + L   GDT +L T       E     +     +   T   G +P 
Sbjct: 15  VTLETGVIARQADAAVLASMGDTTVLVTVVGKKAEEPGRDFFPLTVNYQEKTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+II    +  +      
Sbjct: 74  --GGFFKRE---GRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDII 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G +     G   G  +++ D  +    ++D
Sbjct: 129 SMIGTSAALA-------------ISGLPFNGPLGVARVGYTNGEYVLNPDVTQLVDSELD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHF 216
                T+ G ++ V+  +E A+  ++  
Sbjct: 176 LVVAGTE-GAVLMVE--SEAASLPEEVM 200


>gi|207723868|ref|YP_002254266.1| polyribonucleotide nucleotidyltransferase protein [Ralstonia
           solanacearum MolK2]
 gi|206589073|emb|CAQ36035.1| polyribonucleotide nucleotidyltransferase protein [Ralstonia
           solanacearum MolK2]
          Length = 752

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 8/160 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V   A GS L   G+T  L  ATL    +E++   ++     
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P +TG   +  +   R+ G      R+  RAL  V+      +  I +  +
Sbjct: 375 RFMLHYNMPPFATGETGRVGSPKRREIGHG----RLAKRALIPVLPKDDEFAYTIRLVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL 157
           + +++G +  A++ G  +AL D    ++       +  +L
Sbjct: 431 ITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLIL 470



 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 78/233 (33%), Gaps = 31/233 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           ++ +    +++ A G+ L+   DT +L T       +     +     +   T   G +P
Sbjct: 15  KVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLTVDYIEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR         R+I R LR +         Q+++   V+        
Sbjct: 75  ---GGFFKRE---GRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVV--HVL-------- 118

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            +I     A  D    +   +          G V A   G   G  +++ +  + +  D+
Sbjct: 119 -SINPEVPA--DIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD----RIADLIKLQKD 236
           D     T+   ++     +E    S++     +    +     I  +  L ++
Sbjct: 176 DLVVAGTERAVLMV---ESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVRE 225


>gi|156102006|ref|XP_001616696.1| exosome complex exonuclease rrp41 [Plasmodium vivax SaI-1]
 gi|148805570|gb|EDL46969.1| exosome complex exonuclease rrp41, putative [Plasmodium vivax]
          Length = 246

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 95/238 (39%), Gaps = 27/238 (11%)

Query: 2   RLSGRQENQMREISLTRR---VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           RL GR+E++ R I +      +   A+G    + G+T LL+      ++    ++ +   
Sbjct: 13  RLDGRKEDECRLIKINVGNENIFTDADGFAFYEIGNTKLLSYIQGPTEL---KKSEEKCS 69

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           I  E  + P +       +     +   + EI   I     +++ L    + +I I   +
Sbjct: 70  IKCEVFLSPFNVYE----KKKKKTKDSVTNEISAYIRNICENIILLDLYKNSEINIFLYI 125

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           I+ DGG + AAI    +AL D                 +K  ++A S   L    +VD +
Sbjct: 126 IERDGGVKHAAINTCILALIDAGIA-------------IKYFISACSVLFLQNRILVDGN 172

Query: 179 YGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
             E ++   +   V+  ++  IV ++  AE      D F AM+    D   +L  + K
Sbjct: 173 QLEINSGAPELTMVIELNTHKIVLLEFDAE---VPIDIFEAMVRTCMDCCINLGNVMK 227


>gi|329116899|ref|ZP_08245616.1| polyribonucleotide nucleotidyltransferase [Streptococcus parauberis
           NCFD 2020]
 gi|326907304|gb|EGE54218.1| polyribonucleotide nucleotidyltransferase [Streptococcus parauberis
           NCFD 2020]
          Length = 748

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 87/250 (34%), Gaps = 28/250 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   + +   
Sbjct: 317 VRPDGRKIDEIRPLDAQIDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDDEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIID 115
                 Y     S G   +  A   R+ G       +  RAL  V+  L       I + 
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPSLEDFP-YAIRLV 431

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V++++G +  A+I    +AL                   +K  VA I+ G++      
Sbjct: 432 AEVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNY 478

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I  +Q   +    +       L  AK    +++
Sbjct: 479 TVLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEALAQAKKARFEIL 537

Query: 232 KLQKDVISNE 241
            L +  I+  
Sbjct: 538 DLIQATIAEP 547



 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 87/231 (37%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
            + +    V+K A G+ +V++G++ +LT A + +K      +     +       G  P 
Sbjct: 14  PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR    +    R+I R +R +         Q+I        +     A
Sbjct: 73  --GGFMKRE---GRPSTDATLTARLIDRPIRPMFADGFRNEIQVINTVLSFDENASAPMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +  G + G  I++ +  +     ++
Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVGYIDGEYIINPNKAQLEASLLE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                +    I  V+  A+    S+D     L      I +LI  Q+++++
Sbjct: 175 LTVAGSKEA-INMVESGAKE--LSEDIMLEALLRGHKAIQELIAFQEEIVA 222


>gi|218782571|ref|YP_002433889.1| polynucleotide phosphorylase/polyadenylase [Desulfatibacillum
           alkenivorans AK-01]
 gi|257096685|sp|B8FCZ0|PNP_DESAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218763955|gb|ACL06421.1| Polyribonucleotide nucleotidyltransferase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 712

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH---LLT-TATLEEKVPMWIRNTKHG 57
           R+ GR+ +++R I+    +     GS L   G+T    +LT  ++ +E+    +   +  
Sbjct: 313 RIGGRRFDEVRPITCEVGILPRTHGSALFTRGETQSLGILTLGSSGDEQRVETLYGDETR 372

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S     +    S R  G       +  RA++ V+         I I  +
Sbjct: 373 PFMLHYNFPPYSVREVKRISGPSRRDIGHGG----LSTRAIKEVLPSKEDFDYTIRIVSE 428

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           +++++G +  A +  A +AL D                 +   V+ I+ G++        
Sbjct: 429 ILESNGSSSMATVCSASLALMD-------------GGVPITNPVSGIAMGLMAEGDKIVV 475

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  VQ   + ++ +++     L  A+     +++ 
Sbjct: 476 LSDILGDEDHMGDMDFKVAGTKDG-ITSVQMDIKISSLTREIMEKALAQARVGRLHILEK 534

Query: 234 QKDVISN 240
               IS 
Sbjct: 535 MLTTISE 541



 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 85/234 (36%), Gaps = 28/234 (11%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
            + +      K A GS +V +G+T  L T    +++           ++ EY     + G
Sbjct: 13  PLRIQTGKLAKQASGSVVVSYGETITLVTVVGSQELRP---GIDFVPLSVEYQEKVYAAG 69

Query: 72  ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
               N  +RE   GR   +     R+I R +R +   +     Q+I     +  +     
Sbjct: 70  RIPGNYFRREI--GRPSEKETLTARLIDRPIRPLFPKTWRYETQVIATVLSMDQENDPDM 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            ++ GA  AL                       +A +  G + G  + +    +      
Sbjct: 128 LSMVGASAALC-------------ISDLPFFTPIACVRVGRIDGELVANPTISQQENC-- 172

Query: 188 DANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D N ++  S   +V V+G  +    S++     +   ++ +  L+++Q++++  
Sbjct: 173 DLNIIVAGSRDGVVMVEGGGQ--FISEEEMLDAIYFGQESLEPLLEMQEELMEK 224


>gi|119112780|ref|XP_318517.3| AGAP010791-PA [Anopheles gambiae str. PEST]
 gi|116118616|gb|EAA13718.3| AGAP010791-PA [Anopheles gambiae str. PEST]
          Length = 737

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 16/246 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR  + +R+IS +  + K   GS L + G T +  T  L+        + +      
Sbjct: 305 RCDGRGLDDLRKISCSVNLHKPLHGSALFQRGQTQVFCTVALDSPESALRLDPIASLDSG 364

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            +       Y   P +TG   K     G  G R      +  + L  ++         + 
Sbjct: 365 MRSKNFFLHYEFPPYATGETGK----IGPIGRREIGHGALAEKGLVPIIPNE--HPFTVR 418

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A +    +AL D    +++ +    +  + K      +  +     
Sbjct: 419 LTSEVLESNGSSSMATVCAGSMALMDAGVPVQEAAAGVAIGLITKYENND-TKHLQDYCI 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + DL   ED   D+D     T  G +  +Q   +            L  + +    ++ L
Sbjct: 478 LTDLLGIEDYMGDMDMKVAGTRRG-MTAIQADIKVPGIPLKVVMEALQKSMEARFKILDL 536

Query: 234 QKDVIS 239
             + I 
Sbjct: 537 MDETIG 542



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 85/231 (36%), Gaps = 27/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + ++    +++A+G  +V  GDT ++ TA  ++K     +N     +  +Y     + 
Sbjct: 1   RILKISSGKYARFADGCSVVTIGDTAVMVTAVAKQK----SQNASFLPLVVDYRQKSAAA 56

Query: 71  GNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
           G R+    +    G   +EI   R++ R++R +         QI+ +   I +       
Sbjct: 57  G-RIPTNFLRRELGPSEKEILSARLVDRSIRPLFPAEFRYDTQIVCNMLAIDSANPPDVQ 115

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           AI GA  AL                     G V A+  G++    I++    E     +D
Sbjct: 116 AINGASAALA-------------LSDIPWNGPVGAVRVGLVDNEAIINPTRKEMQLSSLD 162

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI----KLQK 235
                T    +V ++G       +++     +         +I    +LQK
Sbjct: 163 LVVTATRQNLVVMLEG--RGNVVNENELRMAIKKGTKEAQLIINGIERLQK 211


>gi|332704834|ref|ZP_08424922.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554983|gb|EGJ52027.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 745

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 91/246 (36%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR    +R +S+   +     GS L K G+T  L  ATL          T  G IT
Sbjct: 321 VRIDGRDLTTVRPLSIEVGLLPQTHGSALFKRGETSSLAIATLGSSRDEQRIETLTGEIT 380

Query: 61  ----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P            S R+ G       +  RA++ V+         I +  
Sbjct: 381 KGFMLHYNFPPFCVNEARFLRGPSRREIGHG----NLAERAIKPVLPADGEFPFTIRVVA 436

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG--MLCGY-- 172
           + ++++G +  AA+ G  +AL D                 +K  VA I+ G   +     
Sbjct: 437 ETMESNGSSSMAAVCGGCLALMDAGV-------------PIKAPVAGIAMGLAKVDDDYF 483

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G +  +Q   + A   Q+     L  AK+    +++
Sbjct: 484 VLTDILGDEDAMGDMDFKVAGTAEG-VTAIQMDIKIAGIPQEVLARALAQAKEARMLILE 542

Query: 233 LQKDVI 238
               ++
Sbjct: 543 EMAKIL 548



 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 88/236 (37%), Gaps = 29/236 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           +I L     +  A+G+ LV+ GDT +L TA + + +P    +     +T  Y  +  + G
Sbjct: 18  DIELETGRFANQADGAVLVRSGDTVVLVTA-VTQALP---EDKGFFPLTCNYQEMSYAAG 73

Query: 72  ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
                  +RE   GR   R   + R+I R LR           QII        +     
Sbjct: 74  RIPGGYFRREI--GRPSDRETLVSRLIDRPLRPSFPKGFRDEVQIIATVLSADKNVNPDV 131

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA  ALH                    G +A+   G + G  +    Y   + +  
Sbjct: 132 LAVTGASAALH-------------ISKIPFNGPLASTRVGYVNGGFVAFPTYQNITELSS 178

Query: 188 DANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
             N V+  S   +V V+G AE    S+D     +      I  L  LQ + +  ++
Sbjct: 179 -LNMVLAASRNAVVMVEGGAE--FMSEDLLAEAIAFGHKMIIPLFDLQDE-LREKI 230


>gi|108763580|ref|YP_630302.1| polynucleotide phosphorylase/polyadenylase [Myxococcus xanthus DK
           1622]
 gi|123374693|sp|Q1DAM1|PNP_MYXXD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|108467460|gb|ABF92645.1| polyribonucleotide nucleotidyltransferase [Myxococcus xanthus DK
           1622]
          Length = 722

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+  R  + +R I+    V     GS +   G+T  L   TL    +E+    +      
Sbjct: 315 RIGDRGHDVVRSITCEVGVLPRTHGSAVFTRGETQALVVTTLGTSDDEQRLEMLGGMAFK 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S            R+ G       +  RALR++V  S      + +  D
Sbjct: 375 RFMLHYNFPPFSVNETKPLRGPGRREVGHG----ALAERALRNMVPKSESFPYTVRLVSD 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +++++G +  A++ G  +AL D    ++       +  V +G   AI         + D+
Sbjct: 431 ILESNGSSSMASVCGGTLALMDAGVPLKAPVAGIAMGLVKEGDKIAI---------LSDI 481

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T  G I  +Q   +    + +     L  A+     ++      
Sbjct: 482 LGDEDHLGDMDFKVCGTSKG-ITSIQMDIKITGLTTEIMSRALEQARQGRLHILGEMLKT 540

Query: 238 ISN 240
           ++ 
Sbjct: 541 LAE 543



 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 87/229 (37%), Gaps = 28/229 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----MLP 67
           E+S+    ++K A+GS +V++GDT LL TA    +     ++     +T EY        
Sbjct: 12  ELSIEVGRLAKQADGSVVVRYGDTMLLVTAVSARE----KKDIDFLPLTVEYQEKLYSAG 67

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
           R  G+  KRE   GR   +     R++ R+ R +         QII        +     
Sbjct: 68  RIPGSYFKRE---GRLTEKETLASRLVDRSCRPLFPEGYAYETQIIASVISSDPENEGDI 124

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
             ITGA  AL             +       G +A I  G + G  + +    +    D+
Sbjct: 125 HGITGASAAL-------------WVSDIPFDGPIAGIRVGRVGGQLVANPTAKQREQSDL 171

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D    ++    IV V+G AE    S+    A L+         + LQ +
Sbjct: 172 DLVMAVSRKA-IVMVEGGAEE--VSEADMVAALDFGFTTAQPALDLQDE 217


>gi|76788173|ref|YP_328934.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           agalactiae A909]
 gi|76799250|ref|ZP_00781422.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           18RS21]
 gi|77405356|ref|ZP_00782451.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           H36B]
 gi|77410940|ref|ZP_00787296.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           CJB111]
 gi|123602514|sp|Q3K3G9|PNP_STRA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|76563230|gb|ABA45814.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           A909]
 gi|76585403|gb|EAO61989.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           18RS21]
 gi|77162995|gb|EAO73950.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           CJB111]
 gi|77176034|gb|EAO78808.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           H36B]
          Length = 709

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 84/249 (33%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 IRPDGRRVDEIRPLDAEIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEAQIIDGLTPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +  A   R+ G       +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEALAQAKKARFEILD 538

Query: 233 LQKDVISNE 241
           +    I+  
Sbjct: 539 VLHGAIAEP 547



 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 26/230 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
           ++ +    V+K A GS +V++GD+ +LT A + +K      +     +       G  P 
Sbjct: 14  KLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR    +    R+I R +R +         Q+I        +     A
Sbjct: 73  --GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDENASAPMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +    + G  I++    E     ++
Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                T    I  V+  A+    S++     L    + + +LI  Q++++
Sbjct: 175 LTVAGTKEA-INMVESGAKE--LSEEIMLEALLKGHEAVCELIAFQEEIV 221


>gi|322785621|gb|EFZ12276.1| hypothetical protein SINV_11817 [Solenopsis invicta]
          Length = 692

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 90/250 (36%), Gaps = 19/250 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIR 52
           +R  GR  + +R+IS    +     GS L + G T ++   TL+        + + M I 
Sbjct: 278 VRCDGRPMDGIRDISCQVDLFNPLHGSALFQRGQTQVMCAVTLDSLQSALKMDTISMLIS 337

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
             K       Y   P +T         + R G R      +  +ALR V+         I
Sbjct: 338 GMKEKNFFLHYEFPPYATNE----TGHASRAGRRELGHGALAEKALRPVLPKD--YPFTI 391

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            +  +V++++G +  A + G  +AL D    +   +    +  V K      +   +  Y
Sbjct: 392 RLTSEVLESNGSSSMATVCGGSLALLDAGIPISSPTAGVAIGLVTK---CNETNTNIENY 448

Query: 173 PIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
            I+ D+   ED   D+D     T  G    +Q   + +          +  A +    +I
Sbjct: 449 KILTDILGIEDYLGDMDFKIAGTKRG-FTALQADIKISGVPLKIIMECIQQATNAKLQII 507

Query: 232 KLQKDVISNE 241
           K    VI   
Sbjct: 508 KTMNTVIREP 517



 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 21/173 (12%)

Query: 69  STGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           +   R+    +    G    EI   R+I R++R +       + QI+ +   I       
Sbjct: 27  AAAGRIPTNFLRRELGPSEHEILTSRVIDRSIRPLFPEGFYFNTQIMCNMLAIDGMNDPD 86

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI GA  AL                     G V A+  GM+    IV+    +     
Sbjct: 87  VIAINGASAALS-------------VSDIPWNGPVGAVRLGMIDNEIIVNPTRRQIQDSI 133

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK----LQK 235
           ++          I+ ++GSA      +      + L       ++     LQK
Sbjct: 134 LNLIITAAKQNLIIMLEGSANEIL--EQQLRKAIKLGVKECQSIVAAITNLQK 184


>gi|88705689|ref|ZP_01103399.1| polyribonucleotide nucleotidyltransferase [Congregibacter litoralis
           KT71]
 gi|88700202|gb|EAQ97311.1| polyribonucleotide nucleotidyltransferase [Congregibacter litoralis
           KT71]
          Length = 704

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 88/246 (35%), Gaps = 28/246 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R+I+    +   A GS L   G+T  +   TL       I +   G    
Sbjct: 314 RIDGRDTRTVRQIACEVDILSKAHGSALFTRGETQAIGAVTLGSTRDAQIIDALEGERRD 373

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G   +    S R+ G      R+  R L +V+ DL       I +  
Sbjct: 374 PFMLHYNFPPYSVGEAGRVGFTSRREIGHG----RLARRGLAAVLPDLEEFP-YTIRVVS 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++    +A+                   LK  VA I+ G++       
Sbjct: 429 EITESNGSSSMASVCVGSLAMMTAGV-------------PLKAPVAGIAMGLVKEGNQFA 475

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G +  +Q   +    ++      L  A      ++ 
Sbjct: 476 VLTDILGDEDHLGDMDFKVAGTANG-VTALQMDIKIEGITEQIMEIALEQAMQARLHILG 534

Query: 233 LQKDVI 238
               V+
Sbjct: 535 QMNAVL 540



 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 78/232 (33%), Gaps = 34/232 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ LV   +T +L T   E    E    +     +       G +P 
Sbjct: 15  VTLETGRIARQATGAVLVTVENTSVLVTVVAEKTAREGRDFFPLAVHYIEKAYSVGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126
             G   KREA   R   +     R+I R +R +     +   Q+I  C V+ AD      
Sbjct: 74  --GGFFKREA---RPSEKETLTSRLIDRPIRPLFADGFMNEVQVI--CTVMSADKHIDPD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185
             A+ G   AL                     G + A   G       I++  Y +    
Sbjct: 127 IPAMIGTSAALA-------------ISGCPFNGPIGAARVGFNESEGYILNPTYDQLPNS 173

Query: 186 DVDANFVMTDSGHI-VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            ++     T    + VE Q        ++D     +  A   +  +IK  ++
Sbjct: 174 KLEMVVAGTQDAVLMVESQADQ----LTEDQMLGAVLFAHQEMQVVIKAVQE 221


>gi|15836844|ref|NP_297532.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa
           9a5c]
 gi|9105050|gb|AAF83052.1|AE003877_7 polynucleotide phosphorylase [Xylella fastidiosa 9a5c]
          Length = 719

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 89/247 (36%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR    +R I++   V     GS L   G+T  +   TL       + +   G   
Sbjct: 334 VRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQVIDAVTGEYK 393

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +      R+ G      R+  R + +V+         I +  
Sbjct: 394 ENFLFHYNFPPYSVGECGRFGVPKRREIGHG----RLARRGVLAVMPSLDEFPYTIRVVS 449

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 450 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEGERFV 496

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  AK     ++ 
Sbjct: 497 VLSDILGDEDHLGDMDFKVAGTSEG-VSALQMDIKIEGITEEIMRQALQQAKVGRLHILG 555

Query: 233 LQKDVIS 239
                ++
Sbjct: 556 EMDKALA 562



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 80/227 (35%), Gaps = 31/227 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A G+ +VK  DT LL T     T  E    +     +       G +P 
Sbjct: 34  VTLETGEVARQANGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQEKFYAGGRIP- 92

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA--DGGTR 126
             G+  KRE   GR   +   I R+I R +R +         QII     +    DG   
Sbjct: 93  --GSFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEIDGDI- 146

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                    KG + A   G   G  I++    E     
Sbjct: 147 -PAMIGASAALSLAGI-------------PFKGPIGAAKIGYNDGQYILNPTVSELKKSQ 192

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           ++     T +  ++     +E A  S++     +      +  +I++
Sbjct: 193 LELVVAGTANAVLMV---ESEAALLSEEVMLGAVIFGHREMQKVIQV 236


>gi|121998524|ref|YP_001003311.1| polynucleotide phosphorylase/polyadenylase [Halorhodospira
           halophila SL1]
 gi|187610274|sp|A1WXU7|PNP_HALHL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|121589929|gb|ABM62509.1| Polyribonucleotide nucleotidyltransferase [Halorhodospira halophila
           SL1]
          Length = 702

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 86/244 (35%), Gaps = 18/244 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS +   G+T  +  +TL       + +   G    
Sbjct: 322 RIDGRDNQTVRPLNVQAGVLPRTHGSAIFTRGETQAIVVSTLGTGRDAQVIDALEGERRE 381

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G          R+ G      ++  R + +V+         I +  +
Sbjct: 382 PFMLHYNFPPYCVGETGFIGTPKRREIGHG----KLAKRGVEAVMPSDEEFPYVIRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V +++G +  A + G  ++L D    ++       +  + +G   A+         + D+
Sbjct: 438 VTESNGSSSMATVCGTSLSLMDAGVPLKAQVAGIAMGLIKEGDEFAV---------LTDI 488

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     +  G +  +Q   +    +++     L+ A+     +++    V
Sbjct: 489 LGDEDHLGDMDFKVAGSKDG-VTALQMDIKIDGITREIMEQALDQARSGRLHILEQMNQV 547

Query: 238 ISNE 241
           I   
Sbjct: 548 IDKP 551



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 69/193 (35%), Gaps = 24/193 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           +++L    V++ A+G+ LV   DT +L T  +  K P   R      +T  Y     + G
Sbjct: 21  QVTLETGGVARQADGAVLVDMADTVVLVTV-VGRKDPAAAR--DFLPLTVNYQERTYAAG 77

Query: 72  ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
                  KRE   GR   +     R+I R +R +         Q+I     +  +     
Sbjct: 78  RIPGGFFKRE---GRPSEKETLTCRLIDRPIRPLFPEGFRQEVQVIATVLSLNDEVDADI 134

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ G   AL                    +G + A   G L G  +++  + + +  D+
Sbjct: 135 PAMIGTSAALALSGI-------------PFEGPIGACRVGHLDGEFVLNPTFSQTAESDL 181

Query: 188 DANFVMTDSGHIV 200
           D     T    ++
Sbjct: 182 DLVVAGTQDAVLM 194


>gi|198401795|gb|ACH87550.1| exosome component 9 [Platynereis dumerilii]
          Length = 530

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 90/261 (34%), Gaps = 30/261 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MRL GR     R I +   + +   G C V  G T ++   + E   P   R    G + 
Sbjct: 117 MRLDGRGCYDYRRIKIQFGIDR---GCCQVHLGKTIVMAQTSCEVTTPKQTR-PSEGNVF 172

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSR------QI 112
               + P +          +GRQ     E+ R++ R ++    VD  +L          I
Sbjct: 173 VNVELSPMAAP-----HFEAGRQSDAGVELTRILERCIKESRCVDTESLCIMSGVKVWTI 227

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVA 162
            +D  V+  +G    AA   A  +L    +           +    ++  +   +     
Sbjct: 228 RVDVHVLNHNGNLIDAASIAAISSLVHFRRPDVSVSGEDVTIHSLEDRDPIPLSVHHMPI 287

Query: 163 AISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
            ++C       Y ++D    E++ +D      M     I   Q +       ++      
Sbjct: 288 CVTCAFYHKGTYLLIDPTDKEENVMDGKVIVGMNKHREICTFQLTGSMLLL-KEQVLRCS 346

Query: 221 NLAKDRIADLIKLQKDVISNE 241
           N+A  ++ ++  L +  + N+
Sbjct: 347 NMAVVKVGEMTALIEQALQND 367


>gi|28198126|ref|NP_778440.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa
           Temecula1]
 gi|28056186|gb|AAO28089.1| polynucleotide phosphorylase [Xylella fastidiosa Temecula1]
          Length = 719

 Score =  101 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 89/247 (36%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR    +R I++   V     GS L   G+T  +   TL       + +   G   
Sbjct: 334 VRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQVIDAVTGEYK 393

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +      R+ G      R+  R + +V+         I +  
Sbjct: 394 ENFLFHYNFPPYSVGECGRFGVPKRREIGHG----RLARRGVLAVMPSLDEFPYTIRVVS 449

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 450 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEGERFV 496

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  AK     ++ 
Sbjct: 497 VLSDILGDEDHLGDMDFKVAGTSEG-VSALQMDIKIEGITEEIMRQALQQAKVGRLHILG 555

Query: 233 LQKDVIS 239
                ++
Sbjct: 556 EMDKALA 562



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 80/227 (35%), Gaps = 31/227 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A G+ +VK  DT LL T     T  E    +     +       G +P 
Sbjct: 34  VTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQEKFYAGGRIP- 92

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA--DGGTR 126
             G+  KRE   GR   +   I R+I R +R +         QII     +    DG   
Sbjct: 93  --GSFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEIDGDI- 146

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                    KG + A   G   G  I++    E     
Sbjct: 147 -PAMIGASAALSLAGI-------------PFKGPIGAAKVGYNDGQYILNPTVSELKKSQ 192

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           ++     T +  ++     +E A  S++     +      +  +I++
Sbjct: 193 LELVVAGTANAVLMV---ESEAALLSEEVMLGAVIFGHREMQKVIQV 236


>gi|295103372|emb|CBL00916.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Faecalibacterium prausnitzii SL3/3]
          Length = 441

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 79/237 (33%), Gaps = 31/237 (13%)

Query: 12  REISLTRRV---SKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYG 64
           R   +          A  S L+++G+T ++          E V  +  N ++       G
Sbjct: 25  RPFKVEMGKMCGLSNA--SALIRYGETCVMCNVVMSPKPREGVDFFPLNVEYEEKLYAAG 82

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+ ++RE   GR G R+    R++ R +R +          I +    +  D  
Sbjct: 83  RIP---GSFMRRE---GRPGERAILTSRVVDRPMRPLFPKEMRNDVCITMTVMSLDPDCS 136

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
              A + GA +                       G +  +  G++ G  +++    +   
Sbjct: 137 PEIAGMIGASLVTA-------------VSDIPWNGPIGGVQVGLVNGEIVLNPTQEQRKV 183

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
            D+      T    IV ++  A      +D     +  A   I  +I+    +++  
Sbjct: 184 SDLALTVAAT-MDKIVMIEAGANE--VDEDTMLTAIKTAHVEIKKIIEFINKIVAER 237



 Score = 55.9 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 38/112 (33%), Gaps = 9/112 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  N++R ++    +     GS +   G T +LTT TL       + +      T 
Sbjct: 322 RVDGRGINEIRPLAAEVGILPRVHGSGMFTRGQTQVLTTCTLGGTKDNQLMDDLTDEQTK 381

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALG 108
                Y   P S G            G R      +  RAL  V+  L    
Sbjct: 382 RYIHHYNFPPYSVGEAR----APRSPGRREIGHGALAERALVPVLPSLEEFP 429


>gi|311695954|gb|ADP98827.1| polynucleotide phosphorylase/polyadenylase [marine bacterium HP15]
          Length = 727

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 87/248 (35%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V     GS L   G+T  + T TL     + I +   G    
Sbjct: 339 RIDGRDNKTVRPIEIEVGVLPSVHGSALFTRGETQAIVTTTLGTSRDVQIIDALEGERKD 398

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      R+  R + +V+         I    +
Sbjct: 399 PFLFHYNFPPYSVGEAGRVGTPGRREVGHG----RLAKRGVLAVMPTLEEFPYAIRAVSE 454

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G+ +AL D                 +K  VA I+ G++        
Sbjct: 455 ITESNGSSSMASVCGSSLALMDAGV-------------PIKAPVAGIAMGLVKEGDKFAV 501

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     L  A      ++  
Sbjct: 502 LTDILGDEDHLGDMDFKVAGTQEG-VTALQMDIKINGITDEIMEIALEQAHAARLHILGE 560

Query: 234 QKDVISNE 241
              VIS  
Sbjct: 561 MNKVISEP 568



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 68/209 (32%), Gaps = 28/209 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A GS LV   D  +L T       +   P +     +   T   G +P 
Sbjct: 38  VTLETGRIARQATGSVLVTVDDISVLGTVVGAKEAKPGQPFFPLTVNYFEKTYAVGKIP- 96

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +     R+I R +R +     +   Q+I             T 
Sbjct: 97  --GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPNGFMNEVQVI-------------TT 138

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187
            ++ +     D    +   +          G + A   G        ++  + E  T  +
Sbjct: 139 VMSSSKNQDPDIAAMLAASAALSISGIPFDGPIGASRVGYTNERGYFLNPTFEELQTSLL 198

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHF 216
           D     T+   ++     +E    ++D  
Sbjct: 199 DMVVAGTEDAVLMV---ESEAKGLTEDQM 224


>gi|226329676|ref|ZP_03805194.1| hypothetical protein PROPEN_03586 [Proteus penneri ATCC 35198]
 gi|225202862|gb|EEG85216.1| hypothetical protein PROPEN_03586 [Proteus penneri ATCC 35198]
          Length = 454

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 97/248 (39%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   +     GS L   G+T  L TATL           I      
Sbjct: 60  RIDGREKDMVRALDIRTGLLPRTHGSALFTRGETQALVTATLGTARDAQTIDDIMGEHTD 119

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 120 TFLLHYNFPPYSVGETGMMGSPKRREIGHG----RLAKRGVLAVMPTIEEFPYTVRVVSE 175

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 176 ITESNGSSSMASVCGASLALMDAGV-------------PIKESVAGIAMGLVKEGDNFVV 222

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G +  +Q   +    +++     LN AK     ++ +
Sbjct: 223 LSDILGDEDHLGDMDFKVAGSRNG-VSALQMDIKIEGITREIMQVALNQAKSARLHILGV 281

Query: 234 QKDVISNE 241
            +D IS  
Sbjct: 282 MEDAISKP 289


>gi|318083345|ref|NP_001187695.1| exosome complex exonuclease rrp43 [Ictalurus punctatus]
 gi|308323723|gb|ADO28997.1| exosome complex exonuclease rrp43 [Ictalurus punctatus]
          Length = 277

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 87/249 (34%), Gaps = 23/249 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  +L       A+GS LVK G+  ++     E   P        G+I  
Sbjct: 23  RPDGRELGEFRPTTLNTGSISTADGSALVKIGNATVICGIKAELATPT-ADAPDKGYIVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGG-RSQEIQRMIGRALRSVVDLSAL--GSRQI--IIDC 116
              + P  +     R    G Q    SQ I  +I  +  +++    L  G  ++  ++ C
Sbjct: 82  NVDLPPLCSS--RFRPGPPGEQAQVASQFIADIIDDS--NIIKKEDLCIGKSKLCWVLYC 137

Query: 117 DV--IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS----------QVLKGHVAAI 164
           D+  +  DG    A I     AL +        + +  L           Q+ K  VA+ 
Sbjct: 138 DIMCLDYDGNLPDACIITLLAALKNAQLPKVTINKETDLPEVDVQHKRHLQINKHPVASS 197

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
                    IVD    E+S        V  ++  +         ++ S +     ++ A 
Sbjct: 198 FAVFDDEVIIVDPTTEEESLATALITAVTDENDQLCAFHKPG-GSSLSAEKLQGCISRAV 256

Query: 225 DRIADLIKL 233
            R  ++ KL
Sbjct: 257 TRNREINKL 265


>gi|224006464|ref|XP_002292192.1| hypothetical protein THAPSDRAFT_263495 [Thalassiosira pseudonana
           CCMP1335]
 gi|220971834|gb|EED90167.1| hypothetical protein THAPSDRAFT_263495 [Thalassiosira pseudonana
           CCMP1335]
          Length = 659

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 94/244 (38%), Gaps = 25/244 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLE---EKVPMWIRNTKH 56
           +R  GR  N +R IS T  +      GS     G+T ++ TA++    + VP     +  
Sbjct: 267 LRADGRGTNAVRPISATTPIFPDCVHGSSQFSRGETQVICTASIGAPSDGVPHASPYSDS 326

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     STG    +   S     R+     +  +A+  V+         + + C
Sbjct: 327 SAF-LHYDFPDFSTGTVKSKGESSA--NRRAIGHGNLAEKAVLPVLPNIHDFPYAVRLTC 383

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--YPI 174
           +V  ++G +  AA  G+ +AL D    +                VA +S G+       +
Sbjct: 384 EVTSSNGSSSMAAACGSTLALLDAGVPLV-------------SPVAGVSVGLTPDSKTLL 430

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           +D+   ED   D+D     T SG ++ +Q    +   +     + L+LAKD    ++   
Sbjct: 431 LDITGTEDHYGDMDFKVCGT-SGGVLSMQLDV-KNPVTMKVIASALSLAKDGRNAILAAM 488

Query: 235 -KDV 237
            K+V
Sbjct: 489 GKEV 492



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 32/171 (18%)

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA--------LGSRQIIIDCDVIQADGGT 125
            +R   SG    R     R+I R +R  + +          L    I+++C+V   D  +
Sbjct: 21  RRRRDNSGPLTDREVLASRVIDRTIRPWLMMGLASSDKAISLPGN-IVVNCEVQSYD--S 77

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
           R ++I G                   +    LK            G  + D    E    
Sbjct: 78  RASSING------------------KKFPVPLKAAACVKLAIQRDGSVVYDPSPNESEDA 119

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             +  +  T    ++      E    S+      L LA++ I  +I+ Q+ 
Sbjct: 120 KFELLYAGTKDRVLML---EFEDPGVSETTVANALMLAQEAILPIIEQQEQ 167


>gi|255658262|ref|ZP_05403671.1| polyribonucleotide nucleotidyltransferase [Mitsuokella multacida
           DSM 20544]
 gi|260849574|gb|EEX69581.1| polyribonucleotide nucleotidyltransferase [Mitsuokella multacida
           DSM 20544]
          Length = 689

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 87/235 (37%), Gaps = 28/235 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-----LEEKVPMWIRNTK 55
           +R  GR+  ++R +S    +     GS L   G T +L T T      +E+V   +    
Sbjct: 310 IRPDGREVEEVRPVSCEVGLLPRTHGSGLFTRGQTQIL-TVTTLGSLGDEQVIDGLGPET 368

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G      +   R+ G       +  RAL  V+         I + 
Sbjct: 369 TKHYIHHYNFPGYSVGEARPMRSPGRREIGHG----ALAERALVPVIPSIEEFPYTIRLV 424

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V++++G +   ++ G+ ++L +                 +K  V+ ++ G++      
Sbjct: 425 SEVLESNGSSSMGSVCGSTLSLMNAGV-------------PIKRPVSGVAMGLVKEGDQY 471

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             + D+   ED+  D+D     T  G I  +Q   +    S++   A L  AK  
Sbjct: 472 TILTDIQGMEDALGDMDFKVAGTTEG-ITAIQMDIKVDGLSREILSAALQQAKRG 525



 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 83/229 (36%), Gaps = 27/229 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    ++K A G+ LV++GDT +L TAT      E V  +     +       G +
Sbjct: 11  RPLVIENGQLAKQANGAVLVRYGDTVVLVTATASAEPREGVDFFPLTVDYEEKMYAAGKI 70

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR    +    R+I R +R +         QI+     ++ D    
Sbjct: 71  P---GGFIKRE---GRPSSDAILCARLIDRPIRPLFPKGFRNDVQIVATVLSVEQDNAPE 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA  AL                     G +A +  G +    +++    E+    
Sbjct: 125 LAAMIGASCAL-------------TVSDIPFMGPIAGVRVGRVNDEFVINPT--EEQRKV 169

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
              N  +  S   V +  +       +D     +    + I  L++ Q+
Sbjct: 170 STLNLTVAGSHDAVMMVEAG-ANELPEDVILDAILFGHEEIKRLVEFQQ 217


>gi|156553642|ref|XP_001600402.1| PREDICTED: similar to exosome component 1 [Nasonia vitripennis]
          Length = 277

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 85/250 (34%), Gaps = 26/250 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+    R +S+       A+ S + K G+T ++     E   P        G+I  
Sbjct: 23  RPDGREFISFRPVSVNIGSITQADSSAVFKIGNTSVVCGIKAELASPK-AETPDCGFIIP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALG---SRQIII-D 115
              + P S+          G  G  +Q   +++ R L     VDL  L     + + +  
Sbjct: 82  NVDLSPLSSSKFR-----PGPPGEETQCATKLVERILVNSEAVDLKDLCIHKDKLVWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQHMED---------CSNKFQLSQVLKGHVAAI 164
           CD+  I  DG    A I     A       + +           +K ++S  L+   A+ 
Sbjct: 137 CDLICIDYDGSVIDACIGALVAAFKILTLPVVEYTIETGATKVDDKNRISVPLRQLPAST 196

Query: 165 SCGMLCGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           +  +     ++ D    E+         V  +   +  V  S      SQ      ++ A
Sbjct: 197 TFAIFDNQLLITDPTEDEEKLALSTLTIVFNEK-SMCMVHKSG-GIPMSQKLLSKCVSKA 254

Query: 224 KDRIADLIKL 233
           K R   + KL
Sbjct: 255 KSRGEQVRKL 264


>gi|242082071|ref|XP_002445804.1| hypothetical protein SORBIDRAFT_07g026060 [Sorghum bicolor]
 gi|241942154|gb|EES15299.1| hypothetical protein SORBIDRAFT_07g026060 [Sorghum bicolor]
          Length = 306

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 95/265 (35%), Gaps = 43/265 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+  R+  + R  ++       A GS LV+ GDT +L +  LE   P    +   G + 
Sbjct: 39  VRIDARRLREARPTTIALGAVSSAHGSALVRLGDTAMLASVKLEVMSPP-AEHPDEGSVA 97

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD------LSALGSRQ--- 111
            E+ M P  +   + R        GRS E+  +I +AL  V+       L  L       
Sbjct: 98  VEFHMPPICSP--LVRP-------GRSAEVAPVISKALEDVLMSSGMLNLKDLCLITGKA 148

Query: 112 ---IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS-------------------- 148
                +D   + ADG    AA+  A  A       +                        
Sbjct: 149 SWLAYLDIYCLNADGSLFDAALISAVAAFTHLEIPLVSVGDDGRLFTVGGNDGKNKFELV 208

Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
           N+ +    L     +++C +     + D    E+S I+     V+  S  +V +Q     
Sbjct: 209 NREKRKLTLCDIPLSLTCALHKDSILADPTSEEESIIETYVTVVVDSSDRLVSLQKVG-G 267

Query: 209 ATFSQDHFFAMLNLAKDRIADLIKL 233
           A  S       ++LAK+R   L ++
Sbjct: 268 AVTSMATIKECISLAKERRQSLREI 292


>gi|329767316|ref|ZP_08258841.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans
           M341]
 gi|328836005|gb|EGF85696.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans
           M341]
          Length = 695

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 87/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR   ++R ++    V     GS L   G T  L   TL    +E++   +   ++
Sbjct: 318 IRPDGRALTEIRPLASRVDVLPRTHGSALFTRGQTQSLGVVTLGNLSDEQIIDDLTQEEN 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RAL  V+         I I  
Sbjct: 378 KRFMLHYNFPAFSVGEVGFSRAPGRREIGHG----ALGERALAQVIPSKEDFPYTIRIVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++++++G +  A I    +AL                   +K  VA I+ G++       
Sbjct: 434 EILESNGSSSQATICSGSMALMAAGV-------------PIKAQVAGIAMGLVKKDEHYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S+      L  A+     +++
Sbjct: 481 ILTDIQGMEDHLGDMDFKVAGTSEG-ITALQMDIKIDGLSEQILKESLEQARVGRLQILE 539

Query: 233 LQKDVISNE 241
               +IS  
Sbjct: 540 HMNSIISEP 548



 Score = 74.7 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 86/221 (38%), Gaps = 27/221 (12%)

Query: 22  KYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78
           + A  + +VK+GDT +LTTA   ++   V  +     +       G +P   G  ++RE 
Sbjct: 26  RQANAAVVVKYGDTVVLTTAVASKEAKDVDFFPLTVNYEEKMYAVGKIP---GGFLRRE- 81

Query: 79  VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138
             GR G  +    R+I R +R + +       Q+I     ++ D     AA+        
Sbjct: 82  --GRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLSVEYDCDPVMAAML------- 132

Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT-DSG 197
                     +    +   KG +A ++ G + G  +++    +     VD     T D+ 
Sbjct: 133 ------GSSLSLSVSNIPFKGPIAGVTVGYVDGEYVINPTVEQMERSTVDLKVAGTIDAI 186

Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           ++VE    A     S++     +    + I  LI  Q+ ++
Sbjct: 187 NMVE----AGAKEVSEEIMLNAIMFGHEEIKRLIAFQQQIV 223


>gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 1
           str. 9-941]
 gi|82700915|ref|YP_415489.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis
           biovar Abortus 2308]
 gi|161620077|ref|YP_001593964.1| polynucleotide phosphorylase/polyadenylase [Brucella canis ATCC
           23365]
 gi|163844182|ref|YP_001628587.1| polynucleotide phosphorylase/polyadenylase [Brucella suis ATCC
           23445]
 gi|189025218|ref|YP_001935986.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus S19]
 gi|237816509|ref|ZP_04595502.1| Polyribonucleotide nucleotidyltransferase [Brucella abortus str.
           2308 A]
 gi|254690300|ref|ZP_05153554.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 6
           str. 870]
 gi|254694788|ref|ZP_05156616.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 3
           str. Tulya]
 gi|254705168|ref|ZP_05166996.1| polynucleotide phosphorylase/polyadenylase [Brucella suis bv. 3
           str. 686]
 gi|254707316|ref|ZP_05169144.1| polynucleotide phosphorylase/polyadenylase [Brucella pinnipedialis
           M163/99/10]
 gi|254709144|ref|ZP_05170955.1| polynucleotide phosphorylase/polyadenylase [Brucella pinnipedialis
           B2/94]
 gi|254718207|ref|ZP_05180018.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. 83/13]
 gi|254731329|ref|ZP_05189907.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 4
           str. 292]
 gi|256030669|ref|ZP_05444283.1| polynucleotide phosphorylase/polyadenylase [Brucella pinnipedialis
           M292/94/1]
 gi|256158670|ref|ZP_05456553.1| polynucleotide phosphorylase/polyadenylase [Brucella ceti
           M490/95/1]
 gi|256254074|ref|ZP_05459610.1| polynucleotide phosphorylase/polyadenylase [Brucella ceti B1/94]
 gi|256258553|ref|ZP_05464089.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 9
           str. C68]
 gi|256370564|ref|YP_003108075.1| polyribonucleotide nucleotidyltransferase [Brucella microti CCM
           4915]
 gi|260169573|ref|ZP_05756384.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. F5/99]
 gi|260546269|ref|ZP_05822009.1| ribosomal protein S1 [Brucella abortus NCTC 8038]
 gi|260567364|ref|ZP_05837834.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40]
 gi|260755840|ref|ZP_05868188.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 6
           str. 870]
 gi|260759063|ref|ZP_05871411.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 4
           str. 292]
 gi|260884865|ref|ZP_05896479.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 9
           str. C68]
 gi|261215115|ref|ZP_05929396.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 3
           str. Tulya]
 gi|261221215|ref|ZP_05935496.1| polyribonucleotide nucleotidyltransferase [Brucella ceti B1/94]
 gi|261314798|ref|ZP_05953995.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
           M163/99/10]
 gi|261316643|ref|ZP_05955840.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
           B2/94]
 gi|261755873|ref|ZP_05999582.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 3 str.
           686]
 gi|261759100|ref|ZP_06002809.1| ribosomal protein S1 [Brucella sp. F5/99]
 gi|265983164|ref|ZP_06095899.1| polyribonucleotide nucleotidyltransferase [Brucella sp. 83/13]
 gi|265987715|ref|ZP_06100272.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
           M292/94/1]
 gi|265997176|ref|ZP_06109733.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M490/95/1]
 gi|294851394|ref|ZP_06792067.1| polyribonucleotide nucleotidyltransferase [Brucella sp. NVSL
           07-0026]
 gi|297247393|ref|ZP_06931111.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 5
           str. B3196]
 gi|306839947|ref|ZP_07472741.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. NF 2653]
 gi|306842722|ref|ZP_07475365.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO2]
 gi|75496015|sp|Q57A96|PNP_BRUAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123727384|sp|Q2YQR3|PNP_BRUA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037301|sp|A9M9Z8|PNP_BRUC2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037302|sp|B0CK15|PNP_BRUSI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702625|sp|B2S9G0|PNP_BRUA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|62197138|gb|AAX75438.1| Pnp, polyribonucleotide nucleotidyltransferase [Brucella abortus
           bv. 1 str. 9-941]
 gi|82617016|emb|CAJ12125.1| Ribosomal protein S1:3' exoribonuclease:RNA binding S1:KH domain:KH
           domain, type 1 [Brucella melitensis biovar Abortus 2308]
 gi|161336888|gb|ABX63193.1| Polyribonucleotide nucleotidyltransferase [Brucella canis ATCC
           23365]
 gi|163674905|gb|ABY39016.1| Polyribonucleotide nucleotidyltransferase [Brucella suis ATCC
           23445]
 gi|189020790|gb|ACD73512.1| Ribosomal protein S1 [Brucella abortus S19]
 gi|237788576|gb|EEP62791.1| Polyribonucleotide nucleotidyltransferase [Brucella abortus str.
           2308 A]
 gi|256000727|gb|ACU49126.1| polyribonucleotide nucleotidyltransferase [Brucella microti CCM
           4915]
 gi|260096376|gb|EEW80252.1| ribosomal protein S1 [Brucella abortus NCTC 8038]
 gi|260156882|gb|EEW91962.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40]
 gi|260669381|gb|EEX56321.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 4
           str. 292]
 gi|260675948|gb|EEX62769.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 6
           str. 870]
 gi|260874393|gb|EEX81462.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 9
           str. C68]
 gi|260916722|gb|EEX83583.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 3
           str. Tulya]
 gi|260919799|gb|EEX86452.1| polyribonucleotide nucleotidyltransferase [Brucella ceti B1/94]
 gi|261295866|gb|EEX99362.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
           B2/94]
 gi|261303824|gb|EEY07321.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
           M163/99/10]
 gi|261739084|gb|EEY27080.1| ribosomal protein S1 [Brucella sp. F5/99]
 gi|261745626|gb|EEY33552.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 3 str.
           686]
 gi|262551644|gb|EEZ07634.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M490/95/1]
 gi|264659912|gb|EEZ30173.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
           M292/94/1]
 gi|264661756|gb|EEZ32017.1| polyribonucleotide nucleotidyltransferase [Brucella sp. 83/13]
 gi|294819983|gb|EFG36982.1| polyribonucleotide nucleotidyltransferase [Brucella sp. NVSL
           07-0026]
 gi|297174562|gb|EFH33909.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 5
           str. B3196]
 gi|306287168|gb|EFM58670.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO2]
 gi|306404911|gb|EFM61196.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. NF 2653]
          Length = 714

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 88/247 (35%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR  + +R I     +     GS L   G+T  +  ATL       + +   G    
Sbjct: 317 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++  +      I    +
Sbjct: 377 SFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPAAEQFPYTIRAVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A + G  +AL D                 +   VA I+ G++  G     
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGV-------------PIVRPVAGIAMGLIKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   +    +++     L  AK     ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTEFG-ITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGE 538

Query: 234 QKDVISN 240
               IS+
Sbjct: 539 MAKAISS 545



 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 84/248 (33%), Gaps = 40/248 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R ++L    +++ A+G+ L  +G+T +L T       +     +     +   T   G +
Sbjct: 14  RPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR       + R+I R +R +         Q++I   V+Q D    
Sbjct: 74  P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVIT--VLQHDLENN 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++  A  AL                     G ++    G + G  +++ +  E   
Sbjct: 126 PDILSMVAASAAL-------------TISGVPFMGPISGARVGYIDGEYVLNPNIDEMPE 172

Query: 185 IDVDANFVMTDSGHIV---EVQGSAERATFSQDHF---------FAMLNLAKDRIADLIK 232
             +D     T    ++   E Q   E        F          A++ LA+    +   
Sbjct: 173 SKLDLVVAGTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRD 232

Query: 233 LQKDVISN 240
            Q + +S 
Sbjct: 233 FQPEDLSE 240


>gi|113475234|ref|YP_721295.1| polynucleotide phosphorylase/polyadenylase [Trichodesmium
           erythraeum IMS101]
 gi|122965040|sp|Q115K2|PNP_TRIEI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110166282|gb|ABG50822.1| Polyribonucleotide nucleotidyltransferase [Trichodesmium erythraeum
           IMS101]
          Length = 717

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 80/230 (34%), Gaps = 20/230 (8%)

Query: 1   MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNT 54
           +R+ GR+ +++R +S    V      GS L   G T +++  TL            +   
Sbjct: 322 IRVDGRKLDEVRPVSCRVGVLPSRVHGSSLFNRGLTQVMSAVTLGTPGDAQELADDLHPQ 381

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y   P S G          + G R      +  RAL  V+  S +    I +
Sbjct: 382 DEKRYLHHYNFPPFSVGETK----PLRQPGRREIGHGALAERALIPVIPKSDIFPYVIRV 437

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             +V+ ++G T   ++  + + L D    +    +   +  + +               +
Sbjct: 438 VSEVLSSNGSTSMGSVCASTLGLMDAGVPIVKPVSGAAMGLIKEDEEV---------RIL 488

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
            D+   ED   D+D     TDSG I  +Q   +      +     ++ AK
Sbjct: 489 TDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLPIEVIADAIHQAK 537



 Score = 91.7 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 92/233 (39%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           R+I L     +  A G+ +++ GDT +L TAT     E +        +       G +P
Sbjct: 13  RDIRLKVGLFAPQAGGAVMIESGDTAVLVTATTAKGREGIDFLPLLVDYEERLYAGGKIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   GR   +     R+I R LR +         QI+     +  +     
Sbjct: 73  ---GGFLRRE---GRPPEKVTLTSRLIDRPLRPLFPSWLRDDIQIVATTLSMDEEVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TG+ VA+                     G +AA+  G++    I++  Y E    D+
Sbjct: 127 LAVTGSSVAVLLA-------------KLPFYGPMAAVRVGLVGDDFIINPTYREVKNGDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     +  G ++ V+  A +    +      ++   + + DLI+ Q+++I+ 
Sbjct: 174 DLVVAGSPQG-VIMVEAGANQ--LPEQDIIEAIDFGYEAVCDLIQAQREIIAE 223


>gi|306843586|ref|ZP_07476187.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO1]
 gi|306276277|gb|EFM57977.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO1]
          Length = 714

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 88/247 (35%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR  + +R I     +     GS L   G+T  +  ATL       + +   G    
Sbjct: 317 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++  +      I    +
Sbjct: 377 TFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPAAEQFPYTIRAVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A + G  +AL D                 +   VA I+ G++  G     
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGV-------------PIVRPVAGIAMGLIKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   +    +++     L  AK     ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTEFG-ITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGE 538

Query: 234 QKDVISN 240
               IS+
Sbjct: 539 MAKAISS 545



 Score = 86.7 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 84/248 (33%), Gaps = 40/248 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R ++L    +++ A+G+ L  +G+T +L T       +     +     +   T   G +
Sbjct: 14  RPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR       + R+I R +R +         Q++I   V+Q D    
Sbjct: 74  P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVIT--VLQHDLENN 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++  A  AL                     G ++    G + G  +++ +  E   
Sbjct: 126 PDILSMVAASAAL-------------TISGVPFMGPISGARVGYIDGEYVLNPNIDEMPE 172

Query: 185 IDVDANFVMTDSGHIV---EVQGSAERATFSQDHF---------FAMLNLAKDRIADLIK 232
             +D     T    ++   E Q   E        F          A++ LA+    +   
Sbjct: 173 SKLDLVVAGTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRD 232

Query: 233 LQKDVISN 240
            Q + +S 
Sbjct: 233 FQPEDLSE 240


>gi|209525615|ref|ZP_03274153.1| Polyribonucleotide nucleotidyltransferase [Arthrospira maxima
           CS-328]
 gi|209493948|gb|EDZ94265.1| Polyribonucleotide nucleotidyltransferase [Arthrospira maxima
           CS-328]
          Length = 720

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 89/246 (36%), Gaps = 19/246 (7%)

Query: 1   MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTK 55
           +R+ GR  +Q+R +S    +  K   GS L   G T +L+ ATL           +    
Sbjct: 323 VRVDGRNLDQVRPVSCRVGLLPKRVHGSGLFNRGLTQVLSIATLGTPGDAQDLDDLHPQD 382

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P S G      +   R+ G       +  RAL  V+         I I 
Sbjct: 383 EKRYMHHYNFPPYSVGETRPMRSPGRREIGHG----ALAERALLPVLPSKEQFPYVIRIV 438

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            +V+ ++G T   ++ G+ +AL D    +    +   +  + +G              + 
Sbjct: 439 SEVLSSNGSTSMGSVCGSTLALMDAGVPIVKPVSGAAMGLIKEGSEV---------RILT 489

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     TDSG I  +Q   +    S D     +  AK     +++   
Sbjct: 490 DIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLSLDVVADAIAKAKPARLHILEKML 548

Query: 236 DVISNE 241
           +V+   
Sbjct: 549 EVLPKH 554



 Score = 86.3 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 89/232 (38%), Gaps = 28/232 (12%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R+I L   +    A G+ LV+ GDT +L TAT  E  P          +  +Y     + 
Sbjct: 13  RDIRLKIGLLAPQAGGALLVESGDTSVLVTATRAEGRP----GIDFLPLLVDYEERLYAG 68

Query: 71  ----GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
               G  ++RE   GR   R     R+I R LR ++        QI+     +       
Sbjct: 69  GRIPGGFLRRE---GRPPDRVTLTSRLIDRPLRPLIPGWIRDDIQIVATTLSMDEQVPPD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+TGA VA+                     G +AA+  G++    I++  Y E    D
Sbjct: 126 VLAVTGASVAVLLA-------------RIPFYGPMAAVRVGLVGDDFIINPTYKEIRNGD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           +D     +  G +V V+  A      +      ++   + + DLIK Q +++
Sbjct: 173 LDLVVAGSPQG-VVMVEAGANE--LPEHDVIEAIDFGYEAVMDLIKAQTEIM 221


>gi|92115185|ref|YP_575113.1| polynucleotide phosphorylase/polyadenylase [Chromohalobacter
           salexigens DSM 3043]
 gi|122990389|sp|Q1QSZ4|PNP_CHRSD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|91798275|gb|ABE60414.1| Polyribonucleotide nucleotidyltransferase [Chromohalobacter
           salexigens DSM 3043]
          Length = 707

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 93/247 (37%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R +S+         GS +   G+T  +  ATL    + ++   +   +  
Sbjct: 316 RIDGRDHRTVRPLSIEVGTLPKTHGSAVFTRGETQAVVVATLGTLRDAQLIESLEGERKD 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G          R+ G      R+  R +++++         I +  +
Sbjct: 376 RFLLHYNFPPYSVGEAGFMGGPKRREIGHG----RLARRGVQAMLPSEEDFPYTIRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ G+ +AL D                 LK  VA I+ G++        
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGV-------------PLKAPVAGIAMGLVKDEDGFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G +  +Q   +    +++     L  A +    +++ 
Sbjct: 479 LTDILGDEDHLGDMDFKVAGSTAG-VTALQMDIKIEGINEEIMETALQQAHEARLHILEQ 537

Query: 234 QKDVISN 240
              VI+ 
Sbjct: 538 MNTVIAQ 544



 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 78/235 (33%), Gaps = 31/235 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ +V   DT +L T      +    P +  +  +   T   G +P 
Sbjct: 15  VTLETGRIARQATGAVMVTMDDTVVLCTVVAKKDVNPAQPFFPLSVHYQEKTYAVGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR   +     R+I R +R +     +   Q++        +     A
Sbjct: 74  --GGFFKRE---GRPTEKETLTSRLIDRPIRPLFPNGFMNEVQVVCTVLSTDRNHDPDIA 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDV 187
           A+ G   AL                     G + A   G        ++    E  + ++
Sbjct: 129 AMLGTSAALA-------------ISGVPFNGPIGAARVGFNEDKGYFLNPTVEELESSEL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA-DLIKLQKDVISNE 241
           +     T+   ++     +E     +D     +      +   +  +Q   +++E
Sbjct: 176 NMVVAGTEKAVLMV---ESEAKELLEDEMLGAVLFGHQEMQAAITAIQ--ALADE 225


>gi|17988244|ref|NP_540878.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv.
           1 str. 16M]
 gi|225853594|ref|YP_002733827.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis
           ATCC 23457]
 gi|256045772|ref|ZP_05448650.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv.
           1 str. Rev.1]
 gi|256112492|ref|ZP_05453413.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv.
           3 str. Ether]
 gi|256264963|ref|ZP_05467495.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv.
           2 str. 63/9]
 gi|260563068|ref|ZP_05833554.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
           1 str. 16M]
 gi|265992189|ref|ZP_06104746.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
           1 str. Rev.1]
 gi|265993928|ref|ZP_06106485.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
           3 str. Ether]
 gi|81851039|sp|Q8YEB7|PNP_BRUME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782709|sp|C0RG51|PNP_BRUMB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|17984011|gb|AAL53142.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
           1 str. 16M]
 gi|225641959|gb|ACO01873.1| Polyribonucleotide nucleotidyltransferase [Brucella melitensis ATCC
           23457]
 gi|260153084|gb|EEW88176.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
           1 str. 16M]
 gi|262764909|gb|EEZ10830.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
           3 str. Ether]
 gi|263003255|gb|EEZ15548.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
           1 str. Rev.1]
 gi|263095446|gb|EEZ19047.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv.
           2 str. 63/9]
 gi|326410167|gb|ADZ67232.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis
           M28]
 gi|326539885|gb|ADZ88100.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis
           M5-90]
          Length = 714

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 88/247 (35%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR  + +R I     +     GS L   G+T  +  ATL       + +   G    
Sbjct: 317 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++  +      I    +
Sbjct: 377 SFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPAAEQFPYTIRAVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A + G  +AL D                 +   VA I+ G++  G     
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGV-------------PIVRPVAGIAMGLIKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   +    +++     L  AK     ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTEFG-ITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGE 538

Query: 234 QKDVISN 240
               IS+
Sbjct: 539 MAKAISS 545



 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 84/248 (33%), Gaps = 40/248 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R ++L    +++ A+G+ L  +G+T +L T       +     +     +   T   G +
Sbjct: 14  RPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR       + R+I R +R +         Q++I   V+Q D    
Sbjct: 74  P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVIT--VLQHDLENN 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++  A  AL                     G ++    G + G  +++ +  E   
Sbjct: 126 PDILSMVAASAAL-------------TISGVPFMGPISGARVGYIDGEYVLNPNIDEMPE 172

Query: 185 IDVDANFVMTDSGHIV---EVQGSAERATFSQDHF---------FAMLNLAKDRIADLIK 232
             +D     T    ++   E Q   E        F          A++ LA+    +   
Sbjct: 173 SKLDLVVAGTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRD 232

Query: 233 LQKDVISN 240
            Q + +S 
Sbjct: 233 FQPEDLSE 240


>gi|113460848|ref|YP_718915.1| polynucleotide phosphorylase/polyadenylase [Haemophilus somnus
           129PT]
 gi|170717334|ref|YP_001784444.1| polynucleotide phosphorylase/polyadenylase [Haemophilus somnus
           2336]
 gi|123031253|sp|Q0I2T0|PNP_HAES1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037307|sp|B0UTJ5|PNP_HAES2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|112822891|gb|ABI24980.1| polynucleotide phosphorylase [Haemophilus somnus 129PT]
 gi|168825463|gb|ACA30834.1| Polyribonucleotide nucleotidyltransferase [Haemophilus somnus 2336]
          Length = 713

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 93/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +    I +   G  T 
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKTD 373

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   +     + +  +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLSEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEDNFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITAEIMQIALNQAKSARMHILGV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTSVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         QII     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQIIATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFINDQFVLNPTMNEQKQSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD   ++     +E    +++   A +     +   +I+  K+
Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQIVIEAIKE 220


>gi|254700800|ref|ZP_05162628.1| polynucleotide phosphorylase/polyadenylase [Brucella suis bv. 5
           str. 513]
 gi|261751308|ref|ZP_05995017.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 5 str.
           513]
 gi|261741061|gb|EEY28987.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 5 str.
           513]
          Length = 714

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 88/247 (35%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR  + +R I     +     GS L   G+T  +  ATL       + +   G    
Sbjct: 317 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++  +      I    +
Sbjct: 377 SFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPAAEQFPYTIRAVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A + G  +AL D                 +   VA I+ G++  G     
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGV-------------PIVRPVAGIAMGLIKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   +    +++     L  AK     ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTEFG-ITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGE 538

Query: 234 QKDVISN 240
               IS+
Sbjct: 539 MAKAISS 545



 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 85/248 (34%), Gaps = 40/248 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R ++L    +++ A+G+ L  +G+T +L T       +     +     +   T   G +
Sbjct: 14  RPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR       + R+I R +R +         Q++I   V+Q D    
Sbjct: 74  P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVIT--VLQHDLENN 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++  A  AL                     G ++    G + G  +++ +  E   
Sbjct: 126 PDILSMVAASAAL-------------TISGVPFMGPISGARVGYIDGEYVLNPNIDEMPE 172

Query: 185 IDVDANFVMTDSGHIV---EVQGSAERATFSQDHF---------FAMLNLAKDRIADLIK 232
             +D     T    ++   E Q   E        F          A++ LA+    +L  
Sbjct: 173 SKLDLVVAGTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKELRD 232

Query: 233 LQKDVISN 240
            Q + +S 
Sbjct: 233 FQPEDLSE 240


>gi|225677342|ref|ZP_03788315.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590610|gb|EEH11864.1| polyribonucleotide nucleotidyltransferase [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 507

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 84/213 (39%), Gaps = 26/213 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTA---TLEEKVPMWIRNTKH 56
           +R+ GR+ +++R+I +   +     GS L   G+T  L  TA   T +E++   I   + 
Sbjct: 310 VRIDGRKHDEIRQIEVEVDILSKTHGSALFTRGNTQALVVTALGTTQDEQIVDDIEGDRR 369

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     + G      + +   G R     ++  +A+  V+   +     I +  
Sbjct: 370 EHFMLHYNFPSFAVGE----TSAARAPGRREIGHGKLAWKAIHPVLPDKSEFPYTIRVVS 425

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +++++DG +  A + G  +AL D                 +K  VA I+ G++       
Sbjct: 426 EILESDGSSSMATVCGTSLALMDTGV-------------PIKAPVAGIAMGLIKDKDEYV 472

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
            + D+   ED   D+D     T  G +  +Q  
Sbjct: 473 ILSDILGDEDYLGDMDFKVAGTSEG-VTALQMD 504



 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 89/232 (38%), Gaps = 31/232 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R +SL    +++ A GS +V +GDT +L T      EE V     N +   I   Y M  
Sbjct: 14  RPLSLETGKIARQAHGSVVVNYGDTSVLVTVVRKKKEESVDFLPLNVQF--IAKSYAMGK 71

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125
              G   KRE   G+   R   I R+I R++R +          I + C+++  D     
Sbjct: 72  IP-GGFFKRE---GKPSDRETLISRVIDRSIRPLFPEGFHDE--ISVVCNLLTYDTVNPP 125

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLDYGEDST 184
              A+ GA  AL                       +A +  G       I++    E   
Sbjct: 126 EVPALIGAVAALA-------------ISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKA 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             +D  F+  D   I+ V+  +E    S+++ F  +    + +  +IKL K+
Sbjct: 173 SSLDL-FLSGDENSILMVE--SEVKELSEENVFNAIKFGHEHLKPVIKLIKE 221


>gi|157828537|ref|YP_001494779.1| polynucleotide phosphorylase/polyadenylase [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165933253|ref|YP_001650042.1| polynucleotide phosphorylase/polyadenylase [Rickettsia rickettsii
           str. Iowa]
 gi|187611282|sp|A8GS96|PNP_RICRS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189037314|sp|B0BXR0|PNP_RICRO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157801018|gb|ABV76271.1| polynucleotide phosphorylase/polyadenylase [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165908340|gb|ABY72636.1| polyribonucleotide nucleotidyltransferase [Rickettsia rickettsii
           str. Iowa]
          Length = 748

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 90/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R+I+    +   A GS L   G+T  L + T    +   I ++  G    
Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S    +  +A S R+ G      ++  RA+  ++         I +  +
Sbjct: 376 RFMLNYIFPPYSVNEAMPMKAPSRREVGHG----KLAWRAINPILPNKVQFPYSIRVVAE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
             +++G +  A + G+ +AL                   +K  VA I+ G++        
Sbjct: 432 TTESNGSSSMATVCGSSLALMYAGV-------------PIKAPVAGIAMGLVKEGKNFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   + +          L  A+     +++ 
Sbjct: 479 LSDILGDEDYFGDMDFKVAGTGEG-ITALQMDIKISGVDFKIMKVALEQARLGRLHILEQ 537

Query: 234 QKDVISNE 241
              VIS  
Sbjct: 538 MNKVISKP 545



 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 86/229 (37%), Gaps = 33/229 (14%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST----GNRVK 75
           +++ A+G+  VK G++ LL TA +  K            +T  Y  +  +     G   K
Sbjct: 23  IARQADGAVTVKMGNSVLLCTAVVANKA---KEGIGFLPLTINYREMAYAAGKIPGGFFK 79

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--RTAAITGA 133
            E   G+   R   + R+I R +R +   + +      + C V+  D  T     AI GA
Sbjct: 80  HE---GKPSDREVLVSRLIDRPIRPLFHPAFVNET--HVTCSVLSYDPETPVDILAIIGA 134

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
             AL                       VAA   G++ G  +++       T  +D     
Sbjct: 135 SAALS-------------LSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVAG 181

Query: 194 T-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           T DS  +VE    +E    S++     +    +    +IK+ K+ ++ E
Sbjct: 182 TSDSVMMVE----SEAHLLSEEQMLEAVKFGFESFQPVIKIIKE-LAEE 225


>gi|321469848|gb|EFX80827.1| hypothetical protein DAPPUDRAFT_243159 [Daphnia pulex]
          Length = 743

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 79/213 (37%), Gaps = 14/213 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA---TLE-----EKVPMWIR 52
           +R  GR+   +R IS    + K   GS + + G T ++ T    + E     + V + + 
Sbjct: 327 IRCDGRKLTDIRNISCGVDLYKPLHGSAIFQRGQTQVVCTVAFDSPESALKSDPVSILMG 386

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
             K       Y   P +T     R    G  G R      +  + LR VV         I
Sbjct: 387 GLKAKNFFLHYEFPPYATNE-TGRVGSGGSAGRRELGHGALAEKGLRPVVPSD--YPFTI 443

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            +  +V++++G +  A++ G  +AL D    +   +    +   L   V   +  +    
Sbjct: 444 RLTSEVLESNGSSSMASVCGGSLALMDAGVPILQPAAGVAVG--LVSRVNPETKQIDDYR 501

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
            + DL   ED   D+D     T  G I  +Q  
Sbjct: 502 ILTDLLGIEDYLGDMDFKLAGTKKG-ITALQAD 533



 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 80/218 (36%), Gaps = 26/218 (11%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
            +++A+GS +  FGDT +L TA  + K            +T +Y     + G R+    +
Sbjct: 33  YARFADGSAVASFGDTAVLVTAVSKAKSSPASFLP----LTVDYRQKAAAAG-RIPTNFL 87

Query: 80  SGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAWV 135
               G   +EI   RMI R+LR +         Q++  C+++  DG       +I  A  
Sbjct: 88  RRELGTSEREILTSRMIDRSLRPLFPDGYFYETQVV--CNLLSVDGVNDPEVLSINAASA 145

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
           AL                     G VAA+  G +    +++    E +   ++     T 
Sbjct: 146 ALA-------------ISDIPWNGPVAAVRVGFIDNEVVINPTRRELAHSQLNLVVSSTF 192

Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
              +V ++ SAE     Q  F   +         + K 
Sbjct: 193 PNLVVMLEASAENVY--QQDFLKAIRTGVKECQTIAKA 228


>gi|148559480|ref|YP_001259963.1| polynucleotide phosphorylase/polyadenylase [Brucella ovis ATCC
           25840]
 gi|187470942|sp|A5VTB6|PNP_BRUO2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148370737|gb|ABQ60716.1| polyribonucleotide nucleotidyltransferase [Brucella ovis ATCC
           25840]
          Length = 714

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 88/247 (35%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR  + +R I     +     GS L   G+T  +  ATL       + +   G    
Sbjct: 317 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++  +      I    +
Sbjct: 377 SFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPAAEQFPYTIRAVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A + G  +AL D                 +   VA I+ G++  G     
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGV-------------PIVRPVAGIAMGLIKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   +    +++     L  AK     ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTEFG-ITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGE 538

Query: 234 QKDVISN 240
               IS+
Sbjct: 539 MAKAISS 545



 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 84/248 (33%), Gaps = 40/248 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    +++ A+G+ L  +G+T +L T       +     +     +   T   G +
Sbjct: 14  RPLTIETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR       + R+I R +R +         Q++I   V+Q D    
Sbjct: 74  P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVIT--VLQHDLENN 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++  A  AL                     G ++    G + G  +++ +  E   
Sbjct: 126 PDILSMVAASAAL-------------TISGVPFMGPISGARVGYIDGEYVLNPNIDEMPE 172

Query: 185 IDVDANFVMTDSGHIV---EVQGSAERATFSQDHF---------FAMLNLAKDRIADLIK 232
             +D     T    ++   E Q   E        F          A++ LA+    +   
Sbjct: 173 SKLDLVVAGTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRD 232

Query: 233 LQKDVISN 240
            Q + +S 
Sbjct: 233 FQPEDLSE 240


>gi|284053181|ref|ZP_06383391.1| polynucleotide phosphorylase/polyadenylase [Arthrospira platensis
           str. Paraca]
 gi|291569922|dbj|BAI92194.1| polyribonucleotide nucleotidyltransferase [Arthrospira platensis
           NIES-39]
          Length = 720

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 91/250 (36%), Gaps = 27/250 (10%)

Query: 1   MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTK 55
           +R+ GR  +Q+R +S    +  K   GS L   G T +L+ ATL           +    
Sbjct: 323 VRVDGRNLDQVRPVSCRVGLLPKRVHGSGLFNRGLTQVLSIATLGTPGDAQDLDDLHPQD 382

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P S G      +   R+ G       +  RAL  V+         I I 
Sbjct: 383 EKRYMHHYNFPPYSVGETRPMRSPGRREIGHG----ALAERALLPVLPSKEQFPYVIRIV 438

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V+ ++G T   ++ G+ +AL D                 +   V+  + G++      
Sbjct: 439 SEVLSSNGSTSMGSVCGSTLALMDAGV-------------PITKPVSGAAMGLIKEGSEV 485

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     TDSG I  +Q   +    S D     +  AK     ++
Sbjct: 486 RILTDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLSLDVVADAIAKAKPARLHIL 544

Query: 232 KLQKDVISNE 241
           +   +V+ + 
Sbjct: 545 EKMLEVLPSP 554



 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 89/232 (38%), Gaps = 28/232 (12%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R+I L   +    A G+ LV+ GDT +L TAT  E  P          +  +Y     + 
Sbjct: 13  RDIRLKIGLLAPQAGGALLVESGDTSVLVTATRAEGRP----GIDFLPLLVDYEERLYAG 68

Query: 71  ----GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
               G  ++RE   GR   R     R+I R LR ++        QI+     +       
Sbjct: 69  GRIPGGFLRRE---GRPPDRVTLTSRLIDRPLRPLIPGWIRDDIQIVATTLSMDEQVPPD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+TGA VA+                     G +AA+  G++    I++  Y E    D
Sbjct: 126 VLAVTGASVAVLLA-------------RIPFYGPMAAVRVGLVGDDFIINPTYKEIRNGD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           +D     +  G +V V+  A      +      ++   + + DLIK Q +++
Sbjct: 173 LDLVVAGSPQG-VVMVEAGANE--LPEHDVIEAIDFGYEAVMDLIKAQTEIM 221


>gi|15604364|ref|NP_220880.1| polynucleotide phosphorylase/polyadenylase [Rickettsia prowazekii
           str. Madrid E]
 gi|8928251|sp|Q9ZD43|PNP_RICPR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|3861056|emb|CAA14956.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (pnp) [Rickettsia
           prowazekii]
          Length = 745

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 92/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR    +R+I+    +   A GS L   G+T  L + T    +   I ++  G   
Sbjct: 315 IRIDGRSTTDIRQIACEVGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYK 374

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S    +  +A S R+ G      ++  RA+  ++         I +  
Sbjct: 375 ERFMLNYIFPPYSVNEAMPMKAPSRREVGHG----KLAWRAINPILPNKVQFPYSIRVVA 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +  +++G +  A + G+ +AL                   +K  VA I+ G++       
Sbjct: 431 ETTESNGSSSMATVCGSSLALMHAGV-------------PIKAPVAGIAMGLVKESNKFA 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T SG I  +Q   + +          L  A+     +++
Sbjct: 478 VLSDIIGDEDYFGDMDFKVAGTSSG-ITALQMDIKISGIDFKIIQIALEQARLGRLHILE 536

Query: 233 LQKDVISNE 241
               VIS  
Sbjct: 537 QMNKVISKP 545



 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 89/235 (37%), Gaps = 32/235 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
           + ++   +++ A  +  VK G++ LL T  +  KV      +     +  +    G +P 
Sbjct: 16  LEISTGKIARQANAAVTVKMGNSILLCTCVVANKVKDGIGFFPLTINYREMAYSAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--R 126
             G   KRE   G+   R   + R+I R +R +   + +      + C V+  D  T   
Sbjct: 75  --GGFFKRE---GKASDREILVSRLIDRPIRPLFHQAFMHET--HVTCSVLSYDPATPVD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI GA  AL                       VAA   G++ G  +++       T  
Sbjct: 128 ILAIIGASAALS-------------ISPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQ 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           +D     T+   ++ V+  +E    S+D     +    +    +IKL K+ ++ E
Sbjct: 175 LDLVVAGTED-SVMMVE--SEAHLLSEDKMLEAVKFGFESFQTVIKLIKE-LAKE 225


>gi|319744138|gb|EFV96511.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           ATCC 13813]
          Length = 713

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 84/249 (33%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 321 VRPDGRRVDEIRPLDAEIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEAQIIDGLTPEYK 380

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +  A   R+ G       +  RAL  V+         I +  
Sbjct: 381 KRFMHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPSLEEFPYAIRLVA 436

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 437 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 483

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    +       L  AK    +++ 
Sbjct: 484 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEALAQAKKARFEILD 542

Query: 233 LQKDVISNE 241
           +    I+  
Sbjct: 543 VLHGAIAEP 551



 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 26/230 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
           ++ +    V+K A GS +V++GD+ +LT A + +K      +     +       G  P 
Sbjct: 18  KLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR    +    R+I R +R +         Q+I        +     A
Sbjct: 77  --GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDENASAPMA 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +    + G  I++    E     ++
Sbjct: 132 AMFGSSLALS-------------ISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALE 178

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                T    I  V+  A+    S++     L    + + +LI  Q++++
Sbjct: 179 LTVAGTKEA-INMVESGAKE--LSEEIMLEALLKGHEAVCELIAFQEEIV 225


>gi|332365788|gb|EGJ43545.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK355]
          Length = 733

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKIDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           L +  I
Sbjct: 539 LIEATI 544



 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT AT+ +K      +     +       G  P
Sbjct: 13  RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R +         Q+I        D   + 
Sbjct: 73  ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S+D     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKDA-INMVESGAKE--LSEDIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|187251573|ref|YP_001876055.1| polyribonucleotide nucleotidyltransferase [Elusimicrobium minutum
           Pei191]
 gi|257096702|sp|B2KDX2|PNP_ELUMP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|186971733|gb|ACC98718.1| Polyribonucleotide nucleotidyltransferase [Elusimicrobium minutum
           Pei191]
          Length = 698

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 91/246 (36%), Gaps = 19/246 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR+ +++R+++    +   A GS L   G T  L   TL       +  +      
Sbjct: 318 VRVDGRKTDEIRQLNSITGLLPRAHGSALFTRGQTQGLVVTTLGTSGDAQLVESLEESYD 377

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     STG      A   R+ G   E+ R   RAL  ++  +      I +  
Sbjct: 378 ETFMLHYNFPGFSTGECKPDRAPGRREIGHG-ELAR---RALLPLIPDADKFPYTIRVVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           D+++++G +  A++ G  ++L D    M+   +   +  + +G   A+         + D
Sbjct: 434 DIMESNGSSSMASVCGGSLSLFDAGVPMKAACSGIAMGLIKEGDKYAV---------LSD 484

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAE-RATFSQDHFFAMLNLAKDRIADLIKLQK 235
           +   ED   D+D     + +G I   Q   +     S +     +  A      ++    
Sbjct: 485 IMGLEDHLGDMDFKLTGSRNG-ITAFQMDVKLAGGISIEILKEAVAQATKGRMHIMDHMD 543

Query: 236 DVISNE 241
            V+   
Sbjct: 544 SVLPEP 549



 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 89/230 (38%), Gaps = 30/230 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST-- 70
           +SL      K A+GS + + GDT +L TA + +KV      +    +T  Y     +   
Sbjct: 18  LSLETGWVAKQADGSVIARMGDTMVLATA-VSDKVQK-PGISDFVPLTVNYKERTYAAGK 75

Query: 71  --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126
             G   KRE+   R   +     R+I R+LR +          +     V+ ADG   T 
Sbjct: 76  IPGGFFKRES---RASKKETLASRIIDRSLRPLFPSGYTCETNVTA--MVLSADGVYDTE 130

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  +  AL                S      VAA+  G L G  IV+    E  + D
Sbjct: 131 VLAVMASSTAL-------------IISSIPFTTPVAAVRIGRLNGNFIVNPTLEEQKSCD 177

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     +  G ++ V+G A+    S++     L  AK  I  L K Q +
Sbjct: 178 MDLIISGSLEG-MLMVEGGAKE--VSEEDVIKALETAKPAIDILCKAQLE 224


>gi|119479959|ref|XP_001260008.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
           putative [Neosartorya fischeri NRRL 181]
 gi|119408162|gb|EAW18111.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
           putative [Neosartorya fischeri NRRL 181]
          Length = 269

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 8/149 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           +RL GR+ N++R +      +  + GS  +  G+T ++ +     +              
Sbjct: 14  LRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73

Query: 58  --WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
              +  +  +   +  +R +R   S RQ  R   I  ++  A +S +         I I 
Sbjct: 74  GAVVEVDVNVAGFAGVDRRRRAGGSDRQSSR---IATILRSAFQSHLHTHLYPHSTISIH 130

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHM 144
             V+ ADG    AA+    +AL D    M
Sbjct: 131 VSVLSADGSLLAAAVNACTLALVDAGIPM 159


>gi|329123749|ref|ZP_08252309.1| polyribonucleotide nucleotidyltransferase [Haemophilus aegyptius
           ATCC 11116]
 gi|327469948|gb|EGF15413.1| polyribonucleotide nucleotidyltransferase [Haemophilus aegyptius
           ATCC 11116]
          Length = 714

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   +  
Sbjct: 319 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 379 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAKFPYVVRVVSE 434

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 435 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEKEKFVV 481

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 482 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 540

Query: 234 QKDVI 238
            +  I
Sbjct: 541 MEQAI 545



 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 20  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 78

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q++     +         
Sbjct: 79  --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 133

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 134 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 180

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD   ++     +E    +++   A +     +   +++  K+
Sbjct: 181 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVVEAIKE 225


>gi|187611440|sp|Q9PGQ9|PNP_XYLFA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 700

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 89/247 (36%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR    +R I++   V     GS L   G+T  +   TL       + +   G   
Sbjct: 315 VRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQVIDAVTGEYK 374

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +      R+ G      R+  R + +V+         I +  
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGVPKRREIGHG----RLARRGVLAVMPSLDEFPYTIRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEGERFV 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  AK     ++ 
Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTSEG-VSALQMDIKIEGITEEIMRQALQQAKVGRLHILG 536

Query: 233 LQKDVIS 239
                ++
Sbjct: 537 EMDKALA 543



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 80/227 (35%), Gaps = 31/227 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A G+ +VK  DT LL T     T  E    +     +       G +P 
Sbjct: 15  VTLETGEVARQANGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQEKFYAGGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA--DGGTR 126
             G+  KRE   GR   +   I R+I R +R +         QII     +    DG   
Sbjct: 74  --GSFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEIDGDI- 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                    KG + A   G   G  I++    E     
Sbjct: 128 -PAMIGASAALSLAGI-------------PFKGPIGAAKIGYNDGQYILNPTVSELKKSQ 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           ++     T +  ++     +E A  S++     +      +  +I++
Sbjct: 174 LELVVAGTANAVLMV---ESEAALLSEEVMLGAVIFGHREMQKVIQV 217


>gi|148284082|ref|YP_001248172.1| polynucleotide phosphorylase/polyadenylase [Orientia tsutsugamushi
           str. Boryong]
 gi|187610322|sp|A5CC62|PNP_ORITB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146739521|emb|CAM79228.1| polyribonucleotide nucleotidyltransferase [Orientia tsutsugamushi
           str. Boryong]
          Length = 740

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 97/247 (39%), Gaps = 27/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+  R  +++R I     +     GS L   GDT  L T TL    +E++   +   +  
Sbjct: 320 RIGNRAVDEIRPIICEAGLFNTVHGSALFTRGDTQSLATITLGSSTDEQIVEQLNKCERQ 379

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
               +Y  LP S G      A S R+ G       +  +A++ V+    +    I I  +
Sbjct: 380 NFLLDYIFLPYSVGEISPLRAASRREIGHGW----LAKKAIQLVIPSKDVFPYTIRIVSE 435

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-----Y 172
           + Q+DG +  A +  A ++L +                 +K HVA I+ G++ G      
Sbjct: 436 ITQSDGSSSMATVCSASLSLMEAGV-------------PIKTHVAGIAMGLVLGEGNKFE 482

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I  +Q   +    +     +    AK  I  ++ 
Sbjct: 483 ILSDISGCEDHLGDMDFKVASTKNG-ITALQLDIKVQGINLSMIESTFRQAKIGINHILN 541

Query: 233 LQKDVIS 239
           +  + IS
Sbjct: 542 VMNNTIS 548



 Score = 82.4 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 84/226 (37%), Gaps = 35/226 (15%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPRSTGNRVK 75
           +++ A+G+ L   G+T +L T   ++        +     +  +    G +P   G  +K
Sbjct: 23  IARNADGAVLASMGNTSVLCTVVFDKNTKKDMDFFPLGVYYREMAYAAGKIP---GGFIK 79

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGA 133
           +E   G+       + R+I R++R + D +     QII  C V+  D        AI G+
Sbjct: 80  KE---GKFSEYEVLVSRLIDRSIRPLFDSNFRNDTQII--CTVMSYDPRYSPDILAIIGS 134

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI--DVDANF 191
             AL                   +   + A   G++    I++     D+T   ++D   
Sbjct: 135 SAALAISGI-------------PIVKPIGAARVGIVNDEFILNP-VIHDNTGVNELDLVV 180

Query: 192 VMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             T DS  ++E Q         ++   A +      +  +I   ++
Sbjct: 181 AATFDSVTMIEAQA----CEIDEEKMLAAIEFGYKSLKPVINAIEE 222


>gi|148230376|ref|NP_001088781.1| hypothetical protein LOC496046 [Xenopus laevis]
 gi|56269196|gb|AAH87445.1| LOC496046 protein [Xenopus laevis]
          Length = 276

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 87/256 (33%), Gaps = 23/256 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+  +L     E   P        G++  
Sbjct: 23  RPDGRELTEFRTTTINVGSITTADGSALVKLGNCTVLCGVKAEFAAPP-ADAPNKGYVVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGG-RSQEIQRMIGRALRSVVDLSAL----GSRQIIIDC 116
              + P  +     R    G +    SQ +  +I  +   ++    L    G    ++ C
Sbjct: 82  NVDLSPLCSSQF--RPGPPGEEAQVASQFMADVIDNS--QMLLKEDLCIRHGKLAWVLYC 137

Query: 117 DV--IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS----------QVLKGHVAAI 164
           D+  +  DG            AL +        + +  L+          ++LK  +A  
Sbjct: 138 DLICLDYDGNLLDTCTCALVAALQNVRLPSVKINEETGLAEVNLKTKCALKILKHPIATS 197

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
                  + + D    E+S        V  +   +   Q     ++ S +     ++ A 
Sbjct: 198 FAVFDDKFLLADPTGEEESLARGLLTVVTDEDERLCATQKPG-GSSLSAEKLQECISRAI 256

Query: 225 DRIADLIKLQKDVISN 240
            R  ++  L ++ +++
Sbjct: 257 TRHKEVTTLLQEALAS 272


>gi|52424548|ref|YP_087685.1| polynucleotide phosphorylase/polyadenylase [Mannheimia
           succiniciproducens MBEL55E]
 gi|81387489|sp|Q65VB0|PNP_MANSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|52306600|gb|AAU37100.1| Pnp protein [Mannheimia succiniciproducens MBEL55E]
          Length = 704

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 93/246 (37%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L   TL  +        +   +  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQSLAVVTLGTERDAQILDELTGERQD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      R+  R + +V+   +     + +  +
Sbjct: 374 TFLFHYNFPPYSVGETGRVGSPKRREIGHG----RLAKRGVAAVMPSISEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PVKSAVAGIAMGLVKEDDKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRTG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535

Query: 234 QKDVIS 239
            +  IS
Sbjct: 536 MEQAIS 541



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 77/232 (33%), Gaps = 27/232 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  +      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVSVVAKKDVKEGQDFFPLTVDYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +     L   QII     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFINDQFVLNPTMAEQKQSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                TD   ++     +E    +++   A +     +   +++  K+ ++ 
Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFVAE 224


>gi|324989722|gb|EGC21665.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK353]
          Length = 733

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           L +  I
Sbjct: 539 LIEATI 544



 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 90/231 (38%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT AT+ +K      +     +       G  P
Sbjct: 13  RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R + +       Q+I        D   + 
Sbjct: 73  ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFEEGFRNEVQVINTVLSYDEDASPQM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           +     T    I  V+  A+    S+D     L    + + +LI  Q++++
Sbjct: 174 ELTVAGTKDA-INMVESGAKE--LSEDVMLEALLKGHEAVKELIAFQEEIV 221


>gi|182680754|ref|YP_001828914.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa M23]
 gi|187611441|sp|Q87EV0|PNP_XYLFT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226704834|sp|B2I730|PNP_XYLF2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|182630864|gb|ACB91640.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa M23]
 gi|307579218|gb|ADN63187.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 700

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 89/247 (36%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR    +R I++   V     GS L   G+T  +   TL       + +   G   
Sbjct: 315 VRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQVIDAVTGEYK 374

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +      R+ G      R+  R + +V+         I +  
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGVPKRREIGHG----RLARRGVLAVMPSLDEFPYTIRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEGERFV 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  AK     ++ 
Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTSEG-VSALQMDIKIEGITEEIMRQALQQAKVGRLHILG 536

Query: 233 LQKDVIS 239
                ++
Sbjct: 537 EMDKALA 543



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 80/227 (35%), Gaps = 31/227 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A G+ +VK  DT LL T     T  E    +     +       G +P 
Sbjct: 15  VTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQEKFYAGGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA--DGGTR 126
             G+  KRE   GR   +   I R+I R +R +         QII     +    DG   
Sbjct: 74  --GSFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEIDGDI- 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                    KG + A   G   G  I++    E     
Sbjct: 128 -PAMIGASAALSLAGI-------------PFKGPIGAAKVGYNDGQYILNPTVSELKKSQ 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           ++     T +  ++     +E A  S++     +      +  +I++
Sbjct: 174 LELVVAGTANAVLMV---ESEAALLSEEVMLGAVIFGHREMQKVIQV 217


>gi|289449845|ref|YP_003475189.1| polyribonucleotide nucleotidyltransferase [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184392|gb|ADC90817.1| polyribonucleotide nucleotidyltransferase [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 745

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 86/241 (35%), Gaps = 29/241 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  +++R +S    +     GS L + G T +LT  TL           + N K  
Sbjct: 312 RVDGRGIDEIRPLSCDAGILPMVHGSGLFQRGQTQVLTICTLGPLSSAQTLDGLDNEKEK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M   STG      +   R+ G       +  R+L  V+         I    +
Sbjct: 372 RYMHHYNMPGYSTGEAKPNRSPGRREIGHG----ALAERSLVPVLPSEEEFPYAIRTVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           ++ ++G T   ++  + +AL D                 +K  VA ISCG+L        
Sbjct: 428 IMMSNGSTSQGSVCASTLALMDAGV-------------PIKRPVAGISCGLLVNEENDED 474

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
               +D+   ED   D+D     T  G I  +Q   +    S D     L + +     +
Sbjct: 475 FLVFMDIQGIEDFFGDMDFKVAGTTEG-ITSIQVDIKVDGLSYDVIRQALAITRKGRLQI 533

Query: 231 I 231
           I
Sbjct: 534 I 534



 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 86/234 (36%), Gaps = 27/234 (11%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R++ +        A GSCL+++G+T +L+TAT        +  +  +  +       G +
Sbjct: 12  RDLIVETGKLAQFANGSCLIRYGNTVVLSTATASKQPRPGIDFFPLSVDYEEKMYAIGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           PR     +KRE   GR   ++    R+I R +R +          +      +  +    
Sbjct: 72  PR---GFIKRE---GRPSEKAILTSRVIDRPMRPLFPKDLRNDVAVNNLVLAVDQNASPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ G+ +A+                    +G ++ +  G++ G  I++ +  +     
Sbjct: 126 IAAMIGSSIAVA-------------ISDIPWRGPISGVQLGLIDGQVIINPNEEQRKQSQ 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T+   I  ++  A+     +D     L      I    +  K +++ 
Sbjct: 173 MAVTLAGTEE-KICMIEAGADEVP--EDVMMNALLAGHQEIQKTCRFIKSIVAE 223


>gi|254444672|ref|ZP_05058148.1| 3' exoribonuclease family, domain 2 [Verrucomicrobiae bacterium
           DG1235]
 gi|198258980|gb|EDY83288.1| 3' exoribonuclease family, domain 2 [Verrucomicrobiae bacterium
           DG1235]
          Length = 745

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 89/254 (35%), Gaps = 33/254 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMWIR---NTK 55
           +R  GR+ N++RE+     V     GS L   G+T   +LTT     +            
Sbjct: 313 VRSGGRKPNELRELKSQVGVVPRVHGSALFSRGETQGLVLTTLGPANQAQSLDAITGGPT 372

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P S G   +     G  G R      +  R+L  VV    +    I I 
Sbjct: 373 TKSFMLHYNFPPFSVGETGRF----GTPGRREIGHGALAERSLLPVVPSEDVFPYSIRIS 428

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-----C 170
            +++ ++G T  A+I G  ++L D                 +   VA IS G++      
Sbjct: 429 SEIMASNGSTSMASICGGCLSLMDAGV-------------PITDPVAGISVGLVSEFDEN 475

Query: 171 GYP-----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
           G P     + D+   ED   D+D     T +G I   Q   +      D   A +  +++
Sbjct: 476 GKPAKHHILTDILGEEDHFGDMDFKIAGTKNG-ITGFQLDLKINGLPFDIVKASVAQSRE 534

Query: 226 RIADLIKLQKDVIS 239
              +++      + 
Sbjct: 535 ARLEILANMATALE 548



 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 86/231 (37%), Gaps = 31/231 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           +I+ +   V+  A G+  V  G+T L  +AT+     E    +     +       G +P
Sbjct: 13  DITFSTGDVANLASGAVTVSTGETSLFVSATVAKTVREGQDWFPLTVDYREKYTAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125
              G   KRE   GR   +     R+  R  R +     L   QII    V+ AD     
Sbjct: 73  ---GGYFKRE---GRPSEKEILTSRLCDRPCRPLFPKGFLNEVQIIGF--VLSADQVNDA 124

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
               + GA  AL                     G + A+  G + G+ + +    E    
Sbjct: 125 DILMVNGASAALA-------------ISDIPWNGPIGAVRVGQIDGHFVANPTIEEQYAS 171

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D+D  +V T+   ++ ++GSA++   S++ F   L  A   I  +I   K 
Sbjct: 172 DLDLIYVGTED-EMLMIEGSADQ--ISEERFLEALEYAHKAIQPIIAGIKQ 219


>gi|118792101|ref|XP_320154.3| AGAP012402-PA [Anopheles gambiae str. PEST]
 gi|116116739|gb|EAA00202.3| AGAP012402-PA [Anopheles gambiae str. PEST]
          Length = 274

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 82/212 (38%), Gaps = 23/212 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+  ++R ++++  V K A+GS +VK G+T ++     E   P  +   +HG++ 
Sbjct: 23  IRPDGRELEELRPLAISFDVIKSADGSAIVKVGNTTVVCGIKAELATPNALA-PRHGFLV 81

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSAL---GSRQII-I 114
               + P S+ +        G     +Q   + +  A+ +   +DL  L     + +  +
Sbjct: 82  PNVDLSPVSSPSYR-----PGPPCDEAQVYSQSVADAISNARCIDLQQLCISPGKLVWCL 136

Query: 115 DCDV--IQADGGTRTAAITGAWVALHD----CLQHMEDCSNKFQLSQVLKGHVAAI---- 164
            CD+  +  DG    AAI     A H      +Q+  D       +  L           
Sbjct: 137 YCDLVCLDHDGCVLDAAIIALVAAFHTVKLPTIQYNSDTEETEADTSRLLPLTVDCVPVT 196

Query: 165 -SCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
            S  M+ G  I D    E+          ++D
Sbjct: 197 TSFVMVAGRLIADPTTEEEKLASTTLTVTVSD 228


>gi|317495525|ref|ZP_07953893.1| polyribonucleotide nucleotidyltransferase [Gemella moribillum M424]
 gi|316914339|gb|EFV35817.1| polyribonucleotide nucleotidyltransferase [Gemella moribillum M424]
          Length = 695

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 87/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR   ++R ++    V     GS L   G T  L   TL    +E++   +   ++
Sbjct: 318 VRPDGRALTEIRPLASRIDVLPRTHGSALFTRGQTQSLGVVTLGNLSDEQIIDDLTQEEN 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RAL  V+         I I  
Sbjct: 378 KRFMLHYNFPAFSVGEVGFSRAPGRREIGHG----ALGERALAQVIPSKEDFPYTIRIVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++++++G +  A I    +AL                   +K  VA I+ G++       
Sbjct: 434 EILESNGSSSQATICSGSMALMAAGV-------------PIKAQVAGIAMGLVKKDEHYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S+      L  A+     ++ 
Sbjct: 481 ILTDIQGMEDHLGDMDFKVAGTSEG-ITALQMDIKIEGLSEQILKESLEQARVGRLQILD 539

Query: 233 LQKDVISNE 241
              ++IS  
Sbjct: 540 HMNNIISEP 548



 Score = 85.1 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 95/230 (41%), Gaps = 26/230 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
           E+++    +++ A  + +VK+GDT +LTTA   ++   V  +     +       G +P 
Sbjct: 16  ELTVELGEMARQANAAVVVKYGDTVVLTTAVASKEAKDVDFFPLTVNYEEKMYAVGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  ++RE   GR G  +    R+I R +R + +       Q+I     ++ D     A
Sbjct: 75  --GGFLRRE---GRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLSVEYDCDPVMA 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                +   KG +A ++ G + G  +++ +  +     +D
Sbjct: 130 AMLGSSLALS-------------VSNIPFKGPIAGVTVGYVDGEYVINPNVEQFEKSKID 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                T    I  V+  AE    S++     +    + I  LI  Q+ ++
Sbjct: 177 LKVAGTKDA-INMVEAGAEE--VSEEVMLNAIMFGHEEIKRLIAFQQQIV 223


>gi|261196958|ref|XP_002624882.1| exosome complex endonuclease 1/ribosomal RNA processing protein
           [Ajellomyces dermatitidis SLH14081]
 gi|239596127|gb|EEQ78708.1| exosome complex endonuclease 1/ribosomal RNA processing protein
           [Ajellomyces dermatitidis SLH14081]
          Length = 293

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 84/261 (32%), Gaps = 22/261 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN---TKHG 57
           +RL GR+ N++R +      +  + GS  +  G+T ++       +           +  
Sbjct: 14  LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++    +   S  +R KR A  G    + S ++   +  A +  +         I +  
Sbjct: 74  VVSVAVNVAGFSGVDRKKRGATGGGGDRQASTDLATALRDAFQPHLHTHLYPHSTISLHV 133

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS----CGMLCG- 171
            V+ +DG    A I    +AL D    M        +    +    A       G +   
Sbjct: 134 SVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAAPELARVGGINES 193

Query: 172 -YPIVDLDYGEDSTID----VDANFVMTDSGHIV-----EVQGS---AERATFSQDHFFA 218
             P++D+   E+  +      + N   T    +      E Q        +     +   
Sbjct: 194 LDPLLDMSMPEEQELPFMTVANTNPAPTGDDSMDDEEGEENQMLSVVQMESGVHISYLET 253

Query: 219 MLNLAKDRIADLIKLQKDVIS 239
           M  +  D    + ++   V+ 
Sbjct: 254 MFAVGLDGCKQVREILNGVLK 274


>gi|302798082|ref|XP_002980801.1| hypothetical protein SELMODRAFT_113341 [Selaginella moellendorffii]
 gi|300151340|gb|EFJ17986.1| hypothetical protein SELMODRAFT_113341 [Selaginella moellendorffii]
          Length = 806

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 87/231 (37%), Gaps = 15/231 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTK 55
           +R  GR  + +R IS +  +   A GS +   G+T  L    L      +++       +
Sbjct: 419 VRSDGRGISDVRPISCSCNLLPRAHGSAIFTRGETQALVAVILGGDNMAQRIDGVTDADE 478

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                 +Y + P S    V R    G    R     R+I R+L  +   S      + ++
Sbjct: 479 VKRFYVQY-VFPHSCVGEVGR---IGPASRREIGHGRLIERSLEPIFP-SKFP-YTVRVE 532

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
             + +++G +  A++ GA++AL D    ++       +  +L       S G +    + 
Sbjct: 533 STITESNGSSSMASVCGAYLALCDAGVPVKCPIAGVAMGLILDPKEYGGSGGPV---ILT 589

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           D+   ED+  D+D     +  G I   Q   +    +       L+ AK  
Sbjct: 590 DILGSEDACGDMDLKVAGSKDG-ITAFQMDLKVQGINLSILKRALSKAKTA 639



 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 83/233 (35%), Gaps = 33/233 (14%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-------LEEKVPMWIRNTKHGWITAEY 63
           R+I L      + A G+  +  G+T L TT           + VP+++   +       Y
Sbjct: 77  RQIVLETGSIGRQAGGAVTISDGETILYTTVCTSAEASEPSDFVPLYVHYHE------RY 130

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
               R++G   KRE   G+       I R++ R LR ++         I +   V+  DG
Sbjct: 131 SAAGRTSGGFNKRE---GKPRDSEVFISRLVDRPLRPMIPKGYFHE--IQVLSWVLSFDG 185

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
                      + L + L      +        +   VA +  G + G  +++    E +
Sbjct: 186 -----------LHLPEPLAITAAGAALALSDVPVLKPVAGVRVGYINGKYVLNPTASEVT 234

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              +D     T  G ++ ++G       S+D     +   +  +  + K  ++
Sbjct: 235 KSSLDMIVAGTSDG-LLMIEG--YCNLLSEDELVKAVETGQRAVKIICKELEE 284


>gi|322514215|ref|ZP_08067277.1| polyribonucleotide nucleotidyltransferase [Actinobacillus ureae
           ATCC 25976]
 gi|322119908|gb|EFX91917.1| polyribonucleotide nucleotidyltransferase [Actinobacillus ureae
           ATCC 25976]
          Length = 707

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 90/245 (36%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   K  
Sbjct: 314 RIDGRTVDTVRALDICTGVLARTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+  +      + +  +
Sbjct: 374 RFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVLAVMPTAEEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEEEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMRIALNQAKGARMHILGV 535

Query: 234 QKDVI 238
               I
Sbjct: 536 MGQAI 540



 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 27/232 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAVGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q++     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARIGFINDQFVLNPTISEQKQSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                TD   ++     +E    S++   + +     +   +I+  K+ +  
Sbjct: 176 LVVAGTDKAVLMV---ESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKE 224


>gi|146321779|ref|YP_001201490.1| polynucleotide phosphorylase/polyadenylase [Streptococcus suis
           98HAH33]
 gi|145692585|gb|ABP93090.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Streptococcus suis 98HAH33]
          Length = 791

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 87/247 (35%), Gaps = 28/247 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   + +   
Sbjct: 369 VRPDGRRVDEIRPLDAEVDFLPNVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDDEYK 428

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIID 115
                 Y     S G+  +     G  G R      +  RAL  V+  L       I + 
Sbjct: 429 KRFLHHYNFPQYSVGSTGR----YGAPGRREIGHGALGERALEQVLPSLEDFP-YAIRLV 483

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V++++G +  A+IT   +AL                   +K  VA I+ G++      
Sbjct: 484 AEVLESNGSSSQASITAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNY 530

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I  +Q   +    +       L  AK    +++
Sbjct: 531 TVLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIDGITPQILEEALAQAKKARFEIL 589

Query: 232 KLQKDVI 238
            + +  I
Sbjct: 590 DVIEATI 596



 Score = 82.4 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 85/231 (36%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
           ++ +    V+K A G+ +V++GD+ +LT A + +K      +     +       G  P 
Sbjct: 66  KLVVETGQVAKQANGAVVVRYGDSTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP- 124

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR    +    R+I R +R +         Q+I        D     A
Sbjct: 125 --GGWMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDPDASAPMA 179

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +  G + G  I++ D  +     ++
Sbjct: 180 AMFGSSLALA-------------ISDIPFNGPIAGVQVGYVNGELIINPDQAQQEASLLE 226

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                     I  V+  A+    S++     L      I +L+  Q  +++
Sbjct: 227 LTVAGNKDA-INMVESGAKE--LSEEVMLEALLKGHAAIQELLDFQNQIVA 274


>gi|288800995|ref|ZP_06406451.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288331929|gb|EFC70411.1| polyribonucleotide nucleotidyltransferase [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 743

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 88/248 (35%), Gaps = 30/248 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57
           RL GR+ +++R I           GS L   G+T  L+T TL  K+   +     +  + 
Sbjct: 325 RLDGRKPDEIRPIWCEVSTLPMPHGSALFTRGETQSLSTCTLGSKLDEKMVDDVLDKSYQ 384

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  R L+  +         + +   
Sbjct: 385 RFLLHYNFPPFSTGEAKAQRGVGRREVGHGH----LAWRGLKGQIPADF--PYTVRLVSQ 438

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    ++L D    M             K  V+ I+ G++        
Sbjct: 439 ILESNGSSSMATVCAGTLSLMDAGVPM-------------KAPVSGIAMGLIKNPGEEKY 485

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     L  AK     ++
Sbjct: 486 AVLSDILGDEDHLGDMDFKTTGTLKG-ITATQMDIKCDGLSFEILEKALMQAKAGREHIL 544

Query: 232 KLQKDVIS 239
               + IS
Sbjct: 545 SKMTETIS 552



 Score = 99.0 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 89/233 (38%), Gaps = 22/233 (9%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWITAEYGMLPRS 69
           R IS+    V+K A+GS ++  G+T LL T    ++ VP             +Y    R 
Sbjct: 14  RFISVETGKVAKQADGSAVITMGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGRF 73

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   KRE   G+         R++ RALR +   +     ++ +   ++ ADG      
Sbjct: 74  PGGFTKRE---GKASDNEILTSRLVDRALRPLFPSN--YHAEVYVQVMLLSADG------ 122

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
                V   D L      +            ++ +    + G  +V+  + +    D+D 
Sbjct: 123 -----VDQPDALAGFAASAALACSDIPFDFPISEVRVARINGEYVVNPTFQQMENADMDL 177

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
               T   +I+ V+G  E    S+      L +A + I  +  LQ + +S E+
Sbjct: 178 MVGATKD-NILMVEG--EMDEVSEQELIEALKVAHEAIKPMCDLQTE-LSKEL 226


>gi|324996021|gb|EGC27932.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK678]
 gi|327460682|gb|EGF07017.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK1]
 gi|327472404|gb|EGF17835.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK408]
 gi|327488757|gb|EGF20556.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK1058]
          Length = 733

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 IRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           L +  I
Sbjct: 539 LIEATI 544



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 90/233 (38%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT AT+ +K      +     +       G  P
Sbjct: 13  RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R +         Q+I        D   + 
Sbjct: 73  ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +     T    I  V+  A+    S+D     L    + + +LI  Q+++++ 
Sbjct: 174 ELTVAGTKEA-INMVESGAKE--LSEDVMLEALLKGHEAVKELIAFQEEIVAT 223


>gi|323350507|ref|ZP_08086169.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           VMC66]
 gi|322123189|gb|EFX94874.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           VMC66]
          Length = 733

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           L +  I
Sbjct: 539 LIEATI 544



 Score = 88.6 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 90/231 (38%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT AT+ +K      +     +       G  P
Sbjct: 13  RELVVETGQVAKQANGSAVVRYGESTILTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R + +       Q+I        D   + 
Sbjct: 73  ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFEEGFRNEVQVINTVLSYDEDASPQM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEISLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           +     T    I  V+  A+    S+D     L    + + +LI  Q++++
Sbjct: 174 ELTVAGTKEA-INMVESGAKE--LSEDIMLEALLKGHEAVKELIAFQEEIV 221


>gi|223940512|ref|ZP_03632361.1| Polyribonucleotide nucleotidyltransferase [bacterium Ellin514]
 gi|223890836|gb|EEF57348.1| Polyribonucleotide nucleotidyltransferase [bacterium Ellin514]
          Length = 664

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 74/228 (32%), Gaps = 14/228 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMWIR---NTKH 56
           R+ GR  + +R I     +   A GS L   G+T    L T    E    +      +  
Sbjct: 217 RMDGRPLDGIRAIHSEAGILPRAHGSALFSRGETQTVALATLGTGEDAQEFDSYTGGSNE 276

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +      R+ G       +  R++  ++ L       I +  
Sbjct: 277 KKFILHYNFPNYSVGETGRISGPGRREIGHG----ALAERSIEPMIPLDKYP-YAIRVTS 331

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           ++++++G T  A++ G  +AL D    M        +    +               + D
Sbjct: 332 EIMESNGSTSMASVCGGTLALMDAGVPMIRPVAGISIGMCTEHDAVDKISAY---KLLSD 388

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           +   ED   D+D     T+ G I   Q   +      D     L  A+
Sbjct: 389 IIGAEDGFGDMDCKIAGTEKG-ITGFQLDLKLRGIPHDMMAETLEKAR 435



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 20/139 (14%)

Query: 100 SVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL 157
            +         Q+     V+ ADG       +I GA  +L                    
Sbjct: 1   PLFPKGWYNEVQVQTV--VLSADGENDPDILSIIGASASL-------------MVSDIPW 45

Query: 158 KGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
            G + A+    + G  I    + E +  D+D  +V  ++  IV  +G+ E    S++ F 
Sbjct: 46  AGPLGALRIARVNGKFIAIPTHAEMAESDLDLIYVGNEND-IVMFEGAGEE--ISEEDFK 102

Query: 218 AMLNLAKDRIADLIKLQKD 236
           A L   +D    LI  QK+
Sbjct: 103 AALKFGQDCCKPLIAAQKE 121


>gi|66475762|ref|XP_627697.1| archeo-eukaryotice exosomal RNAse PH [Cryptosporidium parvum Iowa
           II]
 gi|32398930|emb|CAD98395.1| ribonuclease PH-like protein, possible [Cryptosporidium parvum]
 gi|46229123|gb|EAK89972.1| archeo-eukaryotice exosomal RNAse PH [Cryptosporidium parvum Iowa
           II]
 gi|323509005|dbj|BAJ77395.1| cgd6_3540 [Cryptosporidium parvum]
          Length = 303

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 95/265 (35%), Gaps = 39/265 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT--KHGW 58
           +R   RQ  ++R I++   V + A+GS     G+T +L          +  +N       
Sbjct: 46  IRNDDRQFEELRPITIRTGVIENADGSAYFSIGNTKVLCGIYGPN---LCKQNPIEDGLS 102

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI-------QRMIGRALRSVVDLSALGSRQ 111
           ++ EY +                +    + EI         ++ + + SV+         
Sbjct: 103 VSVEYTIGSFC----RDSALAKSKVNTENIEIKSDEKIKSILLEKVISSVICHEKYKRSS 158

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
           I     +I  DG   +AAI+ A ++L +      +    F  + ++   V + S     G
Sbjct: 159 IDCYFYIIDDDGSAFSAAISAACLSLCNAKI---EIIGLFSATNII--AVNSNSLFNHDG 213

Query: 172 Y--------PIVDLDYGEDSTIDVDANFVMTDSG------HIVEVQGSAERATF-SQDHF 216
                     I+D  Y E S +   +N+   + G       +V +  SA    F      
Sbjct: 214 KKQTEDEYSMILDPTYNEISYLGA-SNYSTLEIGLCTIRNQVVYL--SANGDFFKDPKRI 270

Query: 217 FAMLNLAKDRIADLIKLQKDVISNE 241
               +LA+   + ++   KD +++E
Sbjct: 271 EEGFSLAEASCSAIVDEIKDHLTSE 295


>gi|332359947|gb|EGJ37761.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK1056]
          Length = 733

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           L +  I
Sbjct: 539 LIEATI 544



 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT AT+ +K      +     +       G  P
Sbjct: 13  RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R +         Q+I        D   + 
Sbjct: 73  ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S+D     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKEA-INMVESGAKE--LSEDIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|319896566|ref|YP_004134759.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           F3031]
 gi|317432068|emb|CBY80418.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           F3031]
          Length = 709

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   +  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAKFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEKEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q++     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQLVLNPTMAEQKQSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD   ++     +E    +++   A +     +   +++  K+
Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVVEAIKE 220


>gi|327468357|gb|EGF13842.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK330]
          Length = 733

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 IRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           L +  I
Sbjct: 539 LIEATI 544



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 90/233 (38%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT AT+ +K      +     +       G  P
Sbjct: 13  RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R +         Q+I        D   + 
Sbjct: 73  ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +     T    I  V+  A+    S+D     L    + + +LI  Q+++++ 
Sbjct: 174 ELTVAGTKEA-INMVESGAKE--LSEDVMLEALLKGHEAVKELIAFQEEIVAT 223


>gi|239609714|gb|EEQ86701.1| exosome complex endonuclease 1/ribosomal RNA processing protein
           [Ajellomyces dermatitidis ER-3]
 gi|327355373|gb|EGE84230.1| exosome complex endonuclease 1/ribosomal RNA processing protein
           [Ajellomyces dermatitidis ATCC 18188]
          Length = 293

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 84/261 (32%), Gaps = 22/261 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN---TKHG 57
           +RL GR+ N++R +      +  + GS  +  G+T ++       +           +  
Sbjct: 14  LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++    +   S  +R KR A  G    + S ++   +  A +  +         I +  
Sbjct: 74  VVSVAVNVAGFSGVDRKKRGATGGGGDRQASTDLATALRDAFQPHLHTHLYPHSTISLHV 133

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS----CGMLCG- 171
            V+ +DG    A I    +AL D    M        +    +    A       G +   
Sbjct: 134 SVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAAPELARVGGINES 193

Query: 172 -YPIVDLDYGEDSTID----VDANFVMTDSGHIV-----EVQGS---AERATFSQDHFFA 218
             P++D+   E+  +      + N   T    +      E Q        +     +   
Sbjct: 194 LDPLLDMSMPEEQELPFMTVANTNPAPTGDDSMDDEEGEENQMLSVVQMESGVHISYLET 253

Query: 219 MLNLAKDRIADLIKLQKDVIS 239
           M  +  D    + ++   V+ 
Sbjct: 254 MFAVGLDGCKQVREILNGVLK 274


>gi|91080613|ref|XP_974147.1| PREDICTED: similar to AGAP002348-PA [Tribolium castaneum]
 gi|270005510|gb|EFA01958.1| hypothetical protein TcasGA2_TC007574 [Tribolium castaneum]
          Length = 389

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 83/231 (35%), Gaps = 31/231 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR  ++ R + L         GSC V  G+T +L   + E + P   R    G +  
Sbjct: 26  RLDGRSFDEFRPLELKFGKQW---GSCYVSLGNTKVLAQTSCEIQQPKSSR-PSEGILNI 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------II 113
              + P +          +GRQ   S ++ R++ + ++    VDL +L  +       + 
Sbjct: 82  NIELNPLAAP-----HFEAGRQSELSVQLNRLLEKCVKDSKAVDLESLCIKTNEKVWALK 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D +V+  +G     A      +L    +           +     +  +  V+  +   
Sbjct: 137 VDINVLNHEGNILDCASIAMLASLTHFRRPDVTCDGEEFIIHSYQQRDPIPTVIHHYPVC 196

Query: 164 ISCGMLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ--GSAERAT 210
           I+  +  G  Y + D    E+ + D      +     +  +   G AE A 
Sbjct: 197 ITYAIFNGGEYILADPSLLEEGSADAMLTIGLNGFKELCALHLGGKAELAP 247


>gi|325479584|gb|EGC82680.1| polyribonucleotide nucleotidyltransferase [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 710

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 94/250 (37%), Gaps = 27/250 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTK 55
           +R  GR   ++R +S    +     GS L K G T +L+  TL     + I     R   
Sbjct: 311 IRPDGRDLTEIRPLSAEAGLLPRVHGSGLFKRGQTQVLSVVTLGSPADVQIIDGLNREEI 370

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                 +Y   P   G+         R+ G      R+  RAL  V+   +     I + 
Sbjct: 371 TKRYMHQYNFPPFCVGDVRPLRGPGRREIGHG----RLAERALVPVLPDESEFPYTIRVV 426

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            +V+ ++G +  A+I G+ ++L D                 +K  VA I+ G++      
Sbjct: 427 SEVLSSNGSSSQASICGSTLSLMDAGV-------------PIKKPVAGIAMGLIKEDDSI 473

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I  +Q   + +  +++     L  A D    ++
Sbjct: 474 SILTDIQGLEDHLGDMDFKVAGTRDG-ITALQMDMKISGITREVLEKSLADAHDARMRIL 532

Query: 232 KLQKDVISNE 241
            + +  I + 
Sbjct: 533 DVIETAIKSP 542



 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 74/223 (33%), Gaps = 27/223 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
           +  +T    ++ A G C ++ GDT +L TA       E +  +             G +P
Sbjct: 14  DFEVTIGKFAEQANGECYIRSGDTSMLVTAVASEKPREGIDFFPLICDFQEKLYAVGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   G+    +  I R + R LR +   +     QII     +  D     
Sbjct: 74  ---GGFLRRE---GKSSDEATLISRQMDRPLRPLFPENYYNDVQIIATVLSMDEDNLPDP 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
               GA +AL                     G V A   G +    I++ +  E     +
Sbjct: 128 LTTIGASIAL-------------GISDIPFDGPVGACMVGKVGDKLIINPNKEEREKSTL 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           +        G I  V+  A     S+      + LA + I  +
Sbjct: 175 ELTVA-GKKGAINMVEAGANE--LSESDMLEAMLLALEEIGHI 214


>gi|145343510|ref|XP_001416364.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576589|gb|ABO94657.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 679

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 85/246 (34%), Gaps = 14/246 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPMW--IRNTKH 56
           +R+ GR   ++R +           GS L + G+T  L T TL   E       +     
Sbjct: 266 VRVDGRGVYELRNLDGVTGTMPIVHGSALFERGNTQALATVTLGSLEDSQRLDNLTGPTS 325

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
             +   Y     S      R       G  +     +  ++L  V          + ++ 
Sbjct: 326 KRLMLHYSFPSFSVNETGARGLSRREVGHGA-----LAEKSLLGVFPDEDAFPFAVRVNT 380

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175
           + ++++G +  AA+    +AL D    + +      +  V+         G +  Y ++ 
Sbjct: 381 ETLESNGSSSMAAVCSGSMALMDAGVPLTEHVGAISIGLVMD---EDEETGEVKRYALMD 437

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T SG +  +Q   + A    D     L+ A      +I + +
Sbjct: 438 DIMGLEDVLGDMDFKIAGTRSG-VTGIQLDCKPAGIPLDILIEALDRASAARQKVIDVME 496

Query: 236 DVISNE 241
             +S  
Sbjct: 497 RAVSEP 502



 Score = 42.4 bits (99), Expect = 0.049,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 29/177 (16%)

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAA 129
              +RE   G    R     R+I RA R +       ++++++ C V+ +DG       A
Sbjct: 17  TFTRRE---GAPKEREILAMRVIDRATRPLF--EKNFAKEVMLQCVVMASDGVEDPAVLA 71

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID-VD 188
           + GA  AL                S    G + A+   ++    IV      D  ++  D
Sbjct: 72  VNGASAAL-------------TASSIPWNGPIGAVRVAVVNKAIIVSPS---DEVVESSD 115

Query: 189 ANFVMTDS---GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                  +     ++E Q +       +      L  A + + +LI  Q   ++NE+
Sbjct: 116 FTLFYAGNEARALMIEAQSNKSGG-LEETLVADALRKAHEAVRELIPPQ-IALANEI 170


>gi|71898659|ref|ZP_00680829.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
           Ann-1]
 gi|71731606|gb|EAO33667.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
           Ann-1]
          Length = 700

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 89/247 (36%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR    +R I++   V     GS L   G+T  +   TL       + +   G   
Sbjct: 315 VRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQVIDAVTGEYK 374

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +      R+ G      R+  R + +V+         I +  
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGVPKRREIGHG----RLARRGVLAVMPSLDEFPYTIRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEGERFV 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  AK     ++ 
Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTSEG-VSALQMDIKIEGITEEIMRQALQQAKVGRLHILG 536

Query: 233 LQKDVIS 239
                ++
Sbjct: 537 EMDKALA 543



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 80/227 (35%), Gaps = 31/227 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A G+ +VK  DT LL T     T  E    +     +       G +P 
Sbjct: 15  VTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQEKFYAGGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA--DGGTR 126
             G+  KRE   GR   +   I R+I R +R +         QII     +    DG   
Sbjct: 74  --GSFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEIDGDI- 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                    KG + A   G   G  I++    E     
Sbjct: 128 -PAMIGASAALSLAGI-------------PFKGPIGAAKVGYNDGQYILNPTVSELKKSQ 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           ++     T +  ++     +E A  S++     +      +  +I++
Sbjct: 174 LELVVAGTANAVLMV---ESEAALLSEEVMLGAVIFGHREMQKVIQV 217


>gi|332365583|gb|EGJ43343.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK1059]
          Length = 733

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           L +  I
Sbjct: 539 LIEATI 544



 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT AT+ +K      +     +       G  P
Sbjct: 13  RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R +         Q+I        D   + 
Sbjct: 73  ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S+D     L      + +LI  Q+++++
Sbjct: 174 ELTVAGTKEA-INMVESGAKE--LSEDIMLEALLKGHQAVKELIAFQEEIVA 222


>gi|119489572|ref|ZP_01622332.1| polyribonucleotide nucleotidyltransferase [Lyngbya sp. PCC 8106]
 gi|119454484|gb|EAW35632.1| polyribonucleotide nucleotidyltransferase [Lyngbya sp. PCC 8106]
          Length = 719

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 90/250 (36%), Gaps = 27/250 (10%)

Query: 1   MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTK 55
           +R+ GR  +Q+R +S       K   GS L   G T +L+ ATL           +    
Sbjct: 323 IRVDGRNLDQVRPVSCRVGFLPKRVHGSGLFNRGLTQVLSIATLGTPGDAQDLDDLHPQD 382

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P S G      +   R+ G       +  RAL  V+ +       I + 
Sbjct: 383 EKRYMHHYNFPPYSVGETKPMRSPGRREIGHG----ALAERALLPVLPVKEQFPYVIRVV 438

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V+ ++G T   ++ G+ ++L D                 +   V+  + G++      
Sbjct: 439 SEVLSSNGSTSMGSVCGSTLSLMDAGV-------------PITKPVSGAAMGLIKEGEEV 485

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     TDSG I  +Q   +    S D     ++ AK     ++
Sbjct: 486 RILTDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLSLDVIAKAIHQAKPARLHIL 544

Query: 232 KLQKDVISNE 241
           +   + I   
Sbjct: 545 ESMLEAIQKP 554



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/236 (23%), Positives = 93/236 (39%), Gaps = 29/236 (12%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R+I L   +    A G+ L++ GDT +L TAT  E  P          +  +Y     + 
Sbjct: 13  RDIRLKIGLLAPQAGGAVLIESGDTSVLVTATRAEGRP----GIDFLPLLVDYEERLYAG 68

Query: 71  ----GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
               G  ++RE   GR   R     R+I R LR ++        QI+     +       
Sbjct: 69  GRIPGGFLRRE---GRPPDRVTLTSRLIDRPLRPLIPGWIRDDIQIVATTLSMDEQVPPD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+TGA VA+                     G +AA+  G+L    I++  Y E    D
Sbjct: 126 VLAVTGASVAVVMAQI-------------PFYGPMAAVRVGLLGDDFIINPTYREVRNGD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           +D     +  G +V V+  A +    +      ++   + + DLIK Q++ I+ E+
Sbjct: 173 LDLVVAGSPEG-VVMVEAGANQ--LPEQDIIEAIDFGYEAVCDLIKAQQE-IAKEL 224


>gi|256060129|ref|ZP_05450311.1| polynucleotide phosphorylase/polyadenylase [Brucella neotomae 5K33]
 gi|261324106|ref|ZP_05963303.1| polyribonucleotide nucleotidyltransferase [Brucella neotomae 5K33]
 gi|261300086|gb|EEY03583.1| polyribonucleotide nucleotidyltransferase [Brucella neotomae 5K33]
          Length = 714

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 88/247 (35%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR  + +R I     +     GS L   G+T  +  ATL       + +   G    
Sbjct: 317 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++  +      I    +
Sbjct: 377 SFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIYPMLPAAEQFPYTIRAVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A + G  +AL D                 +   VA I+ G++  G     
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGV-------------PIVRPVAGIAMGLIKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   +    +++     L  AK     ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTEFG-ITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGE 538

Query: 234 QKDVISN 240
               IS+
Sbjct: 539 MAKAISS 545



 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 84/248 (33%), Gaps = 40/248 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R ++L    +++ A+G+ L  +G+T +L T       +     +     +   T   G +
Sbjct: 14  RPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR       + R+I R +R +         Q++I   V+Q D    
Sbjct: 74  P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVIT--VLQHDLENN 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++  A  AL                     G ++    G + G  +++ +  E   
Sbjct: 126 PDILSMVAASAAL-------------TISGVPFMGPISGARVGYIDGEYVLNPNIDEMPE 172

Query: 185 IDVDANFVMTDSGHIV---EVQGSAERATFSQDHF---------FAMLNLAKDRIADLIK 232
             +D     T    ++   E Q   E        F          A++ LA+    +   
Sbjct: 173 SKLDLVVAGTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRD 232

Query: 233 LQKDVISN 240
            Q + +S 
Sbjct: 233 FQPEDLSE 240


>gi|118590504|ref|ZP_01547906.1| polynucleotide phosphorylase/polyadenylase [Stappia aggregata IAM
           12614]
 gi|118436967|gb|EAV43606.1| polynucleotide phosphorylase/polyadenylase [Stappia aggregata IAM
           12614]
          Length = 709

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 88/247 (35%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R IS    +   A GS L   G+T  L  ATL           +  T   
Sbjct: 317 RIDGRDLSTVRAISSEVGILPRAHGSALFTRGETQGLVVATLGTGEDEQYIDLLEGTVKS 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++         + +  +
Sbjct: 377 HFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAINPMMPPHHEFPYTVRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A + G  ++L D                 LK  VA I+ G++        
Sbjct: 433 ITESNGSSSMATVCGTSLSLMDAGV-------------PLKAPVAGIAMGLIKDGDRFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     L  AKD    ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTQDG-ITSLQMDIKIDGITEEIMKVALGQAKDGRIHILGE 538

Query: 234 QKDVISN 240
               I+ 
Sbjct: 539 MSKAITE 545



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 70/227 (30%), Gaps = 27/227 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + L    V++ A+G+ +  +G+T +L T     + +     +     +       G +
Sbjct: 14  RPLVLETGKVARQADGAVMASYGETKVLATVVSAKSPKPGQDFFPLTVNYQEKAFAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR         R+I R +R +         Q++I       +    
Sbjct: 74  P---GGYFKRE---GRPSEHETLTSRLIDRPIRPLFADGYKNDTQVVITVLSHDLENAPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  +  AL                     G +     G + G  +++    +     
Sbjct: 128 ILAMVASSAAL-------------TLSGVPFMGPIGGARVGYINGEYVLNPLVDDMPEST 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +D     T+   ++     +E     +D     +         +I  
Sbjct: 175 LDLVVAGTNDAVLMV---ESEAKELDEDIMLGAVMFGHKGFQPVIDA 218


>gi|254675240|ref|NP_001157042.1| exosome complex component RRP43 isoform 1 [Mus musculus]
          Length = 280

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 89/260 (34%), Gaps = 27/260 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P  +     G++  
Sbjct: 23  RPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-VDAPDRGYVVF 81

Query: 62  ----EYGMLPRSTGNRVKREAVSGRQGGRSQE-IQRMIGRALRSVVDLSAL----GSRQI 112
                  + P  +     R    G +   + + I  ++  +   V+    L    G    
Sbjct: 82  LSVPNVDLPPLCSS--RFRTGPPGEEAQVTSQFIADVVDNS--QVIKKEDLCISPGKLAW 137

Query: 113 IIDCDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHV 161
           ++ CD+  +  DG    A       AL +             + + + K +    ++ + 
Sbjct: 138 VLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRTNP 197

Query: 162 AAISCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
            A S  +      IVD    E+         V  + G +  +      +  +       +
Sbjct: 198 VATSFAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPG-GSGLTGAKLQDCM 256

Query: 221 NLAKDRIADLIKLQKDVISN 240
           + A  R  ++ KL  +VI +
Sbjct: 257 SRAVTRHKEVSKLLDEVIQS 276


>gi|90416139|ref|ZP_01224071.1| polyribonucleotide nucleotidyltransferase [marine gamma
           proteobacterium HTCC2207]
 gi|90331864|gb|EAS47078.1| polyribonucleotide nucleotidyltransferase [marine gamma
           proteobacterium HTCC2207]
          Length = 715

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   +     GS L   G+T  +  ATL       + +   G    
Sbjct: 314 RIDGRDTTTVRGIDVEVGILPKVHGSSLFTRGETQAIVAATLGSTRDAQMIDALEGRRDD 373

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +    S R+ G      R+  R + +V+         + +  +
Sbjct: 374 PFMLHYNFPPYSVGEAGRIGFTSRREVGHG----RLARRGINAVLPSPEEFPYAMRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G+ +AL D    ++       +  V +    A+         + D+
Sbjct: 430 ITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEDSGYAV---------LTDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     T +G I  +Q   +    +++     L  A      ++     V
Sbjct: 481 LGDEDHLGDMDFKVAGTAAG-ITALQMDIKIEGITEEIMEIALEQAMQARLHILGEMNKV 539

Query: 238 ISN 240
           IS 
Sbjct: 540 IST 542



 Score = 66.3 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 80/237 (33%), Gaps = 33/237 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ L    DT +L T     +       +     +       G +P 
Sbjct: 15  VTLETGRIARQATGAVLCSIDDTSVLCTVVGAREAKPGMDFFPLGVHYIEKAYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG--TR 126
             G   KRE   GR   +     R+I R +R +         Q++  C V+ A+      
Sbjct: 74  --GGFFKRE---GRPNEKETLTSRLIDRPIRPLFPNGFKNEVQVV--CTVMSAEKNIDPD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTI 185
            AA+ G   AL                     G V     G       +++  Y E +  
Sbjct: 127 IAAMIGTSAALSISGI-------------PFNGPVGGARVGYTDEQGYLLNPTYSELADS 173

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            +D     T    ++     +E +  S+D     +  A   +  +I +  + ++ EV
Sbjct: 174 ALDMVVAGTKDAVLMV---ESEASELSEDIMLGGVLFAHQEMQSVITVIAE-LAAEV 226


>gi|237730084|ref|ZP_04560565.1| polyribonucleotide nucleotidyltransferase [Citrobacter sp. 30_2]
 gi|226908690|gb|EEH94608.1| polyribonucleotide nucleotidyltransferase [Citrobacter sp. 30_2]
          Length = 710

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 95/246 (38%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR+++ +R + +   V     GS L   G+T  L TATL           +   +  
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTRDAQNLDELMGERTD 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 375 NFLFHYNFPPYCVGETGMVGSPKRREIGHG----RLAKRGVLAVMPELDKFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA +AL D                 +K  VA I+ G++     + +
Sbjct: 431 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNFVV 477

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +  G I  +Q   +    +++     LN AK     ++ +
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 536

Query: 234 QKDVIS 239
            +  I+
Sbjct: 537 MEQAIN 542



 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALTLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I  + +L K+ 
Sbjct: 177 LVVAGTEAAVLMV---ESEAELLSEDQMLGAVVFGHEQQQVVIQAINELAKEA 226


>gi|154506293|ref|ZP_02043031.1| hypothetical protein RUMGNA_03835 [Ruminococcus gnavus ATCC 29149]
 gi|153793432|gb|EDN75852.1| hypothetical protein RUMGNA_03835 [Ruminococcus gnavus ATCC 29149]
          Length = 718

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 83/250 (33%), Gaps = 26/250 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
           R  GR  +Q+R ++    +     GS +   G T  + T T          I        
Sbjct: 334 RPDGRAIDQIRPLAAETDLIPRVHGSAMFTRGQTQ-ICTVTTLAPLSEAQRIDGLDEAET 392

Query: 60  TAEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  Y M   +  +    E    R  G R      +  RAL  V+   A     I    + 
Sbjct: 393 SKRY-MHHYNFPSYSVGETKPSRGPGRREIGHGALAERALLPVLPSEAEFPYAIRTVSET 451

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY------ 172
            +++G T  A++  + ++L                   +K  VA IS G++ G       
Sbjct: 452 FESNGSTSQASVCASSMSLMTAGV-------------PIKAAVAGISAGLVTGETDDDYL 498

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI- 231
            + D+   ED   D+D     T  G I  +Q   +    ++      +   K     ++ 
Sbjct: 499 VLTDIQGLEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAIAATKKARTYILD 557

Query: 232 KLQKDVISNE 241
           ++    I+  
Sbjct: 558 EVMNKAIAEP 567



 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 76/226 (33%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    V+K A G+ L+ +GDT +L TAT      + +  +  + ++       G +
Sbjct: 34  RTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASEKPRDGIDFFPLSVEYNERLYAVGKI 93

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 94  P---GGFNKRE---GKASENAILTCRVIDRPMRPLFPKDYRNDVTLENLVMSVDQDCSPE 147

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA +A                      G ++    G++ G  + +    +    D
Sbjct: 148 LTAMLGAAIA-------------TSISDIPFDGPISTTQVGLVDGEFVFNPTAAQKEVSD 194

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +      +  A +    +I 
Sbjct: 195 LALTVASTKE-KVIMIEAGANEVP--EAQMIEAIFAAHELNQKVIA 237


>gi|159128917|gb|EDP54031.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
           putative [Aspergillus fumigatus A1163]
          Length = 269

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 8/149 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           +RL GR+ N++R +      +  + GS  +  G+T ++ +     +              
Sbjct: 14  LRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73

Query: 58  --WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
              +  +  +   +  +R +R   S RQ  R   I  ++  A +S +         I I 
Sbjct: 74  GAVVEVDVNIAGFAGVDRRRRAGGSDRQSSR---IATILRSAFQSHLHTHLYPHSTISIH 130

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHM 144
             V+ ADG    AA+    +AL D    M
Sbjct: 131 VSVLSADGSLLAAAVNACTLALVDAGIPM 159


>gi|159490978|ref|XP_001703450.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
           reinhardtii]
 gi|158280374|gb|EDP06132.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
           reinhardtii]
          Length = 296

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 89/265 (33%), Gaps = 34/265 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ N MR+      +      SC V  G T ++   +   + P +      G + 
Sbjct: 26  VRLDGRRPNDMRKPKFQFSLDDR---SCTVAQGSTRVMAVVSAALEAP-YPDRPSEGPLR 81

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQII- 113
                 P ++          G+ G  + ++ R+I R LR    VD  AL    G  ++  
Sbjct: 82  FNVEFSPMASPA-----FEPGKPGEDAIQVARLIERGLRQSGAVDQEALWVGAGRVRVWA 136

Query: 114 --IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH----------- 160
             +DC V+   G         A  AL    +   +   +     ++              
Sbjct: 137 LRVDCHVLDHGGNLLDCCFLAALAALMAFRKPEVEVGGESGSEIIVHPPEVREPVPLTIH 196

Query: 161 --VAAISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
               A++  +       + D  + E++        VM  +  +  V   A+    S + F
Sbjct: 197 HLPVAVTFALFQAGDMLVADPTWKEEAAAAGSCTVVMNPAQEVCCVHK-ADGIGLSPEQF 255

Query: 217 FAMLNLAKDRIADLIKLQKDVISNE 241
              + LA  +  +++   K  +   
Sbjct: 256 MRCVRLAGRQAEEVVAGLKKALEGH 280


>gi|85860514|ref|YP_462716.1| polynucleotide phosphorylase/polyadenylase [Syntrophus
           aciditrophicus SB]
 gi|123752513|sp|Q2LWT4|PNP_SYNAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|85723605|gb|ABC78548.1| polyribonucleotide nucleotidyltransferase [Syntrophus
           aciditrophicus SB]
          Length = 705

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 86/233 (36%), Gaps = 26/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT----ATLEEKVPMWIRNTKHG 57
           R+ GR   ++R IS    +   A GS L   G+T  L       + +E+   ++   +  
Sbjct: 323 RIDGRSYAEIRAISAEVGILPRAHGSALFNRGETQSLAALALGTSSDEQRLDYVAGEETR 382

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G       +  +AL  V+         I I  +
Sbjct: 383 SFILHYNFPPYCVGEARPLRSPGRREIGHG----NLARKALMPVIPSPEEFPYTIRIVSE 438

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIV- 175
           ++ ++G +  A + G  + L D                 +KG VA I+ G+L  G  +V 
Sbjct: 439 ILSSNGSSSMATVCGGLLCLMD-------------GGVPVKGVVAGIAMGLLKEGEQVVI 485

Query: 176 --DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             D+   ED   D+D     T  G I  +Q   +    ++D     L  A++ 
Sbjct: 486 LSDILGDEDHAGDMDFKVCGTSKG-ITAMQMDIKIDGINEDILRKALAQAREG 537



 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 88/248 (35%), Gaps = 39/248 (15%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R IS+        A+G+ +V +GDT ++ TA    T  E V        +  +T   G +
Sbjct: 12  RNISIKTGYVAGQADGAVMVIYGDTVVMVTAVSLKTAREGVDFLPLTVDYQEMTYAAGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   R     R+I R++R +         Q++     + ++  + 
Sbjct: 72  P---GGFFKRE---GRPNEREILTSRVIDRSIRPLFPKGYCYETQLVATVLSVDSENDS- 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                       D    +   +         KG +  +  G + G  I +    E    D
Sbjct: 125 ------------DVAALLAASAALEISDIPFKGPIVGVRVGRVDGQFICNPSKLEQEKGD 172

Query: 187 VDANFVM----------TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ-- 234
           ++   V               ++V ++G  E     ++H  A ++   + +  +I+LQ  
Sbjct: 173 LNLYLVGRKVVPGTEGRPYDVNLVMLEG--EAQQVEEEHVIAGIDFGLECMRPVIELQDQ 230

Query: 235 -KDVISNE 241
            +  +   
Sbjct: 231 LRSALGKP 238


>gi|70989313|ref|XP_749506.1| exosome complex endonuclease 1/ribosomal RNA processing protein
           [Aspergillus fumigatus Af293]
 gi|66847137|gb|EAL87468.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
           putative [Aspergillus fumigatus Af293]
          Length = 269

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 8/149 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           +RL GR+ N++R +      +  + GS  +  G+T ++ +     +              
Sbjct: 14  LRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73

Query: 58  --WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
              +  +  +   +  +R +R   S RQ  R   I  ++  A +S +         I I 
Sbjct: 74  GAVVEVDVNIAGFAGVDRRRRAGGSDRQSSR---IATILRSAFQSHLHTHLYPHSTISIH 130

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHM 144
             V+ ADG    AA+    +AL D    M
Sbjct: 131 VSVLSADGSLLAAAVNACTLALVDAGIPM 159


>gi|319775898|ref|YP_004138386.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           F3047]
 gi|317450489|emb|CBY86706.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
           F3047]
          Length = 709

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   +  
Sbjct: 314 RIDGRTIDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPSLAKFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEKEKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTREG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILGV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q++     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD   ++     +E    +++   A +     +   +I+  K+
Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVIEAIKE 220


>gi|254471003|ref|ZP_05084406.1| polyribonucleotide nucleotidyltransferase protein [Pseudovibrio sp.
           JE062]
 gi|211960145|gb|EEA95342.1| polyribonucleotide nucleotidyltransferase protein [Pseudovibrio sp.
           JE062]
          Length = 712

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 92/247 (37%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R I     +   A GS L   G+T  +  ATL           +  TK  
Sbjct: 315 RIDGRDLSTVRSIVSEVGMLPRAHGSSLFTRGETQAMVVATLGTGEDEQFIDLLEGTKKA 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++         + +  +
Sbjct: 375 TFMLHYNFPPYSVGEAGR----MGSPGRREIGHGKLAWRAVNPMLPAHHDFPYTVRVVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A++ GA ++L D                 LK  VA I+ G++  G     
Sbjct: 431 ITESNGSSSMASVCGASLSLMDAGV-------------PLKAPVAGIAMGLIKEGERFAV 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +++G I  +Q   +    +++     L  AK     ++  
Sbjct: 478 LSDILGDEDHLGDMDFKVAGSENG-ITALQMDIKIDGITEEIMKVALEQAKGGRVHILGE 536

Query: 234 QKDVISN 240
               I+ 
Sbjct: 537 MAKAITE 543



 Score = 81.7 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 76/235 (32%), Gaps = 31/235 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + L    V++ A+G+ +  +G+T +L T       +     +     +       G +
Sbjct: 14  RPLILETGKVARQADGAVIATYGETKVLATVVSAKDAKPGQDFFPLTVNYQEKAYAAGRI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR         R+I R +R +         Q+++       +    
Sbjct: 74  P---GGFFKRE---GRPSEHETLTSRLIDRPIRPLFVDGYKNETQVVLTVLSHDLENAPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                     G +     G + G  +++    +    +
Sbjct: 128 VVAMVGASAAL-------------TISGVPFMGPIGGARVGYINGEYVLNPTVDQMEETN 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
           +D     T+   ++     +E    S++     +          I  +I+L +  
Sbjct: 175 LDLVVAGTNDAVLMV---ESEAQELSEEVMLGAVMFGHKGFQPVIDAIIQLAEKA 226


>gi|320333541|ref|YP_004170252.1| polyribonucleotide nucleotidyltransferase [Deinococcus maricopensis
           DSM 21211]
 gi|319754830|gb|ADV66587.1| Polyribonucleotide nucleotidyltransferase [Deinococcus maricopensis
           DSM 21211]
          Length = 718

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 92/246 (37%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           +R  GR    +R I +         GS +   G+T +L T TL  +        + + K+
Sbjct: 317 VRADGRNSRTVRPIWIETHALPRPHGSAIFTRGETQVLGTTTLGTERDEILIDDLTDDKN 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +    S R+ G       +  RA+R+V+         I I  
Sbjct: 377 DRFMLHYNFPPYSTGEVKRMSGQSRREVGHG----NLAKRAIRAVLPSFEEFPYVIRIVG 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           DV++++G +  A +    ++L D                 +K  VA ++ G++       
Sbjct: 433 DVLESNGSSSMATVCAGTLSLMDAGV-------------PIKAPVAGVAMGLVMEGDRYR 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G +  +Q   +    +       L  AK+    ++ 
Sbjct: 480 VLTDILGLEDALGDMDFKVCGTAEG-VTALQMDIKIQGITPAIMREALAQAKEARLHILG 538

Query: 233 LQKDVI 238
              +V+
Sbjct: 539 KMAEVL 544



 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 79/231 (34%), Gaps = 24/231 (10%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           RE++L          G+  V++GD  LL TA   E V               +  + R  
Sbjct: 13  RELTLETGKLAKLVSGAVTVRYGDAVLLVTAQAREDVSPLDFLPLTVEFEERHYAVGRIP 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  +RE   GR G R+    R+  R +R +         Q+II      A  G      
Sbjct: 73  GSFHRRE---GRPGERAILSARITDRQIRPLFPKGYRHETQVIITVLSADAQVGADVLGP 129

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  AL                     G  A +  G + G  +V+  Y +     +D  
Sbjct: 130 IGASAALS-------------LSDVPWAGPTACVRVGFVGGEYVVNPTYDQLDASSLDLV 176

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL----QKDV 237
              T    I+ V+  A+     ++     +  A   +  +I L    Q++V
Sbjct: 177 VAGTRDA-ILMVEAGAQ--VVEEELLVGAIEFAHREMQPIIDLIEQMQREV 224


>gi|258648734|ref|ZP_05736203.1| polyribonucleotide nucleotidyltransferase [Prevotella tannerae ATCC
           51259]
 gi|260851047|gb|EEX70916.1| polyribonucleotide nucleotidyltransferase [Prevotella tannerae ATCC
           51259]
          Length = 768

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 89/250 (35%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           RL GRQ  ++R I           GS +   G+T  L T TL  ++   +     +  + 
Sbjct: 325 RLDGRQTTEIRPIWCEAGPLPMPHGSAIFTRGETQALATTTLGTRLDEKMIDDVLDKSYQ 384

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL++ +         + I  D
Sbjct: 385 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKNQIPADF--PYTVRIVSD 438

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    ++L D    M                V+ I+ G++        
Sbjct: 439 ILESNGSSSMATVCAGTLSLLDAGVPMNR-------------PVSGIAMGLIKNPGEEKY 485

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T +G +   Q   +    S +     L  AK     ++
Sbjct: 486 AILSDILGDEDHLGDMDFKTTGTING-LTATQMDIKCDGLSYEILEKALMQAKAGREHIL 544

Query: 232 KLQKDVISNE 241
               + ++  
Sbjct: 545 GKLTETLAEP 554



 Score = 85.9 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 88/240 (36%), Gaps = 27/240 (11%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWIT 60
             GR       IS+      K A+G+ +++  +T LL T    ++ VP            
Sbjct: 11  PDGRT------ISIETGKLAKQADGAIMLRLNNTMLLATVVAAKDAVPGTDFMPLQCDYK 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y    R  G   KRE   GR         R++ RALR +   +     ++ ++  +  
Sbjct: 65  EKYSAAGRFPGGFTKRE---GRASDYEILTSRLVDRALRPLFPSN--YHAEVYVNITLFS 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG             + D L      +          G ++ +    + G  +++  + 
Sbjct: 120 ADG-----------KDMPDALAGFAASAALAASDIPFDGPISEVRVARINGAYVINPTFE 168

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +    D+D     T+  +I+ V+G  E     +      L  A + I  + +LQK+++  
Sbjct: 169 QLKQADMDIMVGATEE-NIMMVEG--EMDEVPESALLEALKAAHEAIKPMCRLQKELMKE 225


>gi|218961755|ref|YP_001741530.1| polynucleotide phosphorylase/polyadenylase [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730412|emb|CAO81324.1| polynucleotide phosphorylase/polyadenylase [Candidatus Cloacamonas
           acidaminovorans]
          Length = 743

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 92/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH----LLTTATLEEKVPMWIRNTKHG 57
           R+ GR  + +REI+    V     GS L   G+T     L      +E+V   +      
Sbjct: 324 RVDGRGTDDIREITCEIDVLPRVHGSALFTRGETQSLGTLTLGGGTDEQVIDGLETEYKK 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R      +  RAL++V+         I I  D
Sbjct: 384 SFYLHYNFPPYSVGEVGR----IGPTGRRELGHGNLAERALKAVLPDKDSFPYTIRIVAD 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
            ++++G +  A+I    +AL                   +K  VA I+ G++  G     
Sbjct: 440 TLESNGSSSMASICSGCLAL-------------MAGGVPIKAPVAGIAMGLIMEGEDYVV 486

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   + +  +++     LN AK     ++ +
Sbjct: 487 LTDIMGLEDHLGDMDFKCAGTREG-ITAMQMDIKISGITREIMQIALNKAKSARFKILDI 545

Query: 234 QKDVISNE 241
             + I+  
Sbjct: 546 MAECIAEP 553



 Score = 95.9 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 88/236 (37%), Gaps = 32/236 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R++ +      K A GS  +++G+T +L TAT      E    +     +       G +
Sbjct: 16  RKLIVETGKMAKQANGSVFIQYGETAVLVTATMSKEPAEDQDFFPLTVDYIEKMYAAGKI 75

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--G 124
           P   G   KRE+   +    +  + R+I R++R +         Q+ I   V+  DG   
Sbjct: 76  P---GGFFKRES---KPSTDATLMARVIDRSIRPLFPEGF--RNQVHIVVTVLSFDGVTD 127

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
             T  + GA +AL                     G +A+++ G +    +V+  + E   
Sbjct: 128 PSTMGVFGASLALS-------------ISDIPFNGPIASVTVGYIDNQFVVNPHFNE-IE 173

Query: 185 IDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                N  V      IV ++ +A     S++     +      I  L  LQ+D IS
Sbjct: 174 TQSKLNLTVAGSESSIVMIESAASE--LSEEMMLDAVFTGHKEIQKLCALQQDFIS 227


>gi|251793162|ref|YP_003007890.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534557|gb|ACS97803.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) [Aggregatibacter
           aphrophilus NJ8700]
          Length = 709

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   +  
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 374 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPTLAEFPYVVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDDKFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRQG-VTALQMDIKIEGITAEIMQIALNQAKSARMHILSV 535

Query: 234 QKDVI 238
            +  I
Sbjct: 536 MEQAI 540



 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q++     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAAL-------------TLSGVPFNGPIGAARVGFINDQFVLNPTINEQKQSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD   ++     +E    +++   A +     +   +++  K+
Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVVEAIKE 220


>gi|256371446|ref|YP_003109270.1| Polyribonucleotide nucleotidyltransferase [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008030|gb|ACU53597.1| Polyribonucleotide nucleotidyltransferase [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 792

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 80/230 (34%), Gaps = 18/230 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMWIRN--TKH 56
           +R+ GR    +R + +   +   A GS L + G+T +L   T  +             + 
Sbjct: 335 VRIDGRDTTTIRPLLIEVGLIPTAHGSGLFQRGETQVLNICTLGMPRMNQQLDTLGVDEE 394

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y M P +TG          R+ G       +  RAL  V+   +     + +  
Sbjct: 395 KRYMHHYNMPPFATGETGFMRGPKRREIGHGL----LAERALVPVLPPESEFPYALRLVS 450

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +V+ ++G T  A++ G+ ++L D    +        +  +    V            + D
Sbjct: 451 EVLSSNGSTSMASVCGSTLSLMDAGVPIRAAVGGIAMGLIAHDGVYTT---------LTD 501

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           +   ED+  D+D     T    +  +Q   +      +   A L  A+  
Sbjct: 502 ILGAEDAFGDMDFKVAGTREF-VTALQLDTKIDGIPSEVLAAALEQARQA 550



 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 81/238 (34%), Gaps = 18/238 (7%)

Query: 13  EISLTRRVSK-YAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
            +          A G+ + + G T +L TAT    + E +  +             G +P
Sbjct: 16  PLRFETGKLALQANGAVVARLGGTTVLVTATGAKHVREGIDFFPLTVDVEERMYAAGKIP 75

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125
              G+  +RE   GR   ++    R+I R LR           ++ +   V+ AD     
Sbjct: 76  ---GSFFRRE---GRATDQAILTARLIDRPLRPSFADGF--RNEVHVVATVLGADLVNPH 127

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  AL       E      +++    G                +L      T 
Sbjct: 128 DVLAINAASAALMVSGLPFEGPIGAVRVALAADGSWIPFPTFQQGDASSFELVVAGRKTS 187

Query: 186 D-VDANFVMTDSGHIVEVQGSAERATF--SQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D  D   +M ++G      G+ E      ++      L  AK  I + I+LQ+++++ 
Sbjct: 188 DGTDIAIMMVEAGGTEATWGAFEANAAIPTEATVAEGLVAAKQWIRESIELQEELVAK 245


>gi|254519178|ref|ZP_05131234.1| polyribonucleotide nucleotidyltransferase [Clostridium sp.
           7_2_43FAA]
 gi|226912927|gb|EEH98128.1| polyribonucleotide nucleotidyltransferase [Clostridium sp.
           7_2_43FAA]
          Length = 704

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 78/229 (34%), Gaps = 16/229 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           R   R  +Q+R IS    +     G+ L   G T ++T AT     + ++   I   +  
Sbjct: 312 RPDERAFDQVRPISCEVGILPRTHGTGLFTRGLTQVMTVATLGAVGDIQIIDGIGEEESK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  RAL  ++         I +  +
Sbjct: 372 RYMHHYNFPGYSVGEVKPLRGPGRREIGHG----ALAERALEPLIPSEEEFPYTIRLVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+ ++G T  A++ G+ +AL D    ++  +    +  +    +            + D+
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGVPLKRPAAGIAMGLITSEDLT-------REEVLTDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
              ED   D+D     T  G I  +Q   +    S       +  A+  
Sbjct: 481 QGIEDFFADMDFKVAGTVEG-ITSIQVDTKIKGLSFKVIEDAIMGARKA 528



 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 77/215 (35%), Gaps = 26/215 (12%)

Query: 28  CLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQ 83
             + +GDT +LT         E +  +  + ++       G +P   G  +KRE   GR 
Sbjct: 29  AFISYGDTVILTNVNASEKPREGIDFFPLSVEYEERLYSVGKIP---GGFIKRE---GRP 82

Query: 84  GGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQH 143
              +    R + R LR +         Q++     ++ D      AI  A ++L      
Sbjct: 83  SENAILFGRAVDRPLRPLFPKGYRNDVQVVCTVVSVEKDNLPEILAINAASLSLC----- 137

Query: 144 MEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ 203
                     S      VAA+  G++ G  I++    E    ++      T    ++ ++
Sbjct: 138 --------LSSIPFTTPVAAVQVGLINGNFILNPTSKEREESELQLTVCATSE-RVMMIE 188

Query: 204 GSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
              +     +D   A +    D   D+IK Q++ +
Sbjct: 189 AGGQEIP--EDVMLAAIKFGFDSCQDIIKFQEEAM 221


>gi|262340893|ref|YP_003283748.1| polyribonucleotide nucleotidyltransferase [Blattabacterium sp.
           (Blattella germanica) str. Bge]
 gi|262272230|gb|ACY40138.1| polyribonucleotide nucleotidyltransferase [Blattabacterium sp.
           (Blattella germanica) str. Bge]
          Length = 713

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 92/247 (37%), Gaps = 30/247 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +RL GR   Q+R I           GS L   G+T  LTT TL   +     +       
Sbjct: 324 IRLDGRTSKQIRPIWSVVDYLPGVHGSALFSRGETQSLTTVTLGSSLDANKIDNVVMENQ 383

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG       VS R+ G       +  RAL++++  +      I +  
Sbjct: 384 EKFYLHYNFPPFSTGEIRPIRGVSRREIGHG----NLAQRALKNIIPNNPY---TIRVVS 436

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           D+++++G +  A +  A +AL D                 +K  V+ I+ G+        
Sbjct: 437 DILESNGSSSMATVCAASLALMDAGIS-------------IKNPVSGIAMGLFMENEKKI 483

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERAT-FSQDHFFAMLNLAKDRIADLI 231
            I D+   ED   D+D     T  G I   Q   ++    + D    +L  A +    ++
Sbjct: 484 IISDIIGEEDHFGDLDFKITGTQYG-ITACQMDVKKTQGLTYDLLNQILKQALEGRIFIL 542

Query: 232 KLQKDVI 238
           +   +V+
Sbjct: 543 RKMLEVL 549



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 81/231 (35%), Gaps = 33/231 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY------- 63
           R I +    ++K A+GS +V+  DT LL T  + ++       T    +T +Y       
Sbjct: 15  RSIIIETGELAKQADGSAIVRLDDTMLLATVVVSKET---KNETNFLPLTVDYREKYSAG 71

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           G +P   G  +KRE   GR         R++ R LR          ++I I   ++  D 
Sbjct: 72  GKIP---GGFIKRE---GRPSDEEILTMRLVDRVLRPTFP--EWFKKEIQIMISLLSYD- 122

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
                        L D L  +   +          G ++ I         I++    +  
Sbjct: 123 ----------KTVLPDGLAGLAASTALSVAGVPFNGPISEIRIIRSKRNFIINPSLDQLK 172

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
             D+D   V      I+ ++G  E     +  F   +  A + I   I+ Q
Sbjct: 173 EADIDL-IVGASMNSIIMIEG--EMKEIKESEFLNTIIHAHEEIQSQIEAQ 220


>gi|269115421|gb|ACZ26287.1| putative exosome complex exonuclease [Mayetiola destructor]
          Length = 273

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 84/251 (33%), Gaps = 26/251 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +  R I +  +    A+GS +VK G+T ++     E   P  +   ++G++ 
Sbjct: 22  IRPDGREFDIFRPIRINIKSIGSADGSAIVKLGNTTVICGIKAELTAPN-VEEPQNGYLI 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG---SRQIII-DC 116
               + P  +       +    Q   +  +  +I  +    +DL  L     + + I  C
Sbjct: 81  PNIDLTPLCSPKYRSAASTDDAQV-LTCHLNDIIRDS--KWIDLKQLCIAKEKLVWILYC 137

Query: 117 DV--IQADGGTRTAAITGAWVALHDCLQHMED-----------CSNKFQLSQVLKGHVAA 163
           D+  I  DG    A++     AL   +                 + +  L       V+ 
Sbjct: 138 DITCIDYDGSILDASVVALCAALRSLMLPKVQYDIETNNYTVHQTERSPLELSENCPVST 197

Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
                       D D  E+   +        D G +  V  +    + +   F   L LA
Sbjct: 198 TCMVFDEKSIFADPDAEEEELANTLITIASCD-GELCLVNKAG-GQSIAGQQFDECLKLA 255

Query: 224 ---KDRIADLI 231
              +  I  LI
Sbjct: 256 LNREKSICKLI 266


>gi|304436486|ref|ZP_07396460.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304370532|gb|EFM24183.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 690

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR  +++R +S    +     GS L   G T +LT     A  +E++   +     
Sbjct: 311 IRPDGRALDEVRPVSCEVGILPRVHGSGLFTRGQTQVLTVTTLGAIGDEQIIDGLGPETT 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      +   R+ G       +  RAL  ++         I +  
Sbjct: 371 KHYLHHYNFPGYSVGEARPMRSPGRREIGHG----ALAERALFPMIPSIEDFPYTIRLVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++++++G +   ++ G+ ++L                   +K  V+ ++ G++       
Sbjct: 427 EILESNGSSSMGSVCGSTLSLMCAGV-------------PIKRPVSGVAMGLVRDGDDYS 473

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED+  D+D     T  G +  +Q   + A  ++D   + L  AK  
Sbjct: 474 ILTDIQGMEDALGDMDFKVAGTSKG-LTAIQMDIKIAGITRDILASALEQAKKG 526



 Score = 95.9 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 86/229 (37%), Gaps = 26/229 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R++++      K A G+ LV++GDT +L TAT      E V  +     +       G +
Sbjct: 11  RKLTVEHGKMAKQANGAVLVRYGDTVVLVTATASKAPREGVDFFPLTVDYEEKMYAAGKI 70

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR    +    R+I R +R +         QI+     ++ D    
Sbjct: 71  P---GGFIKRE---GRPSSDAVLCARLIDRPIRPLFPDGFRNDVQIVATVLSVEQDNPPE 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA  AL                     G +A +  G + G  +++    E+   D
Sbjct: 125 IAAMFGASCAL-------------TVSDIPFMGPIAGVRVGYINGEFVINPT--EEQRAD 169

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            D N  +  S   V +  +       +    A++      I  L++ Q+
Sbjct: 170 SDLNLTVAGSYDAVMMVEAGANELPEEIVLDAIILFGHAEIRRLVEFQQ 218


>gi|146319581|ref|YP_001199293.1| polynucleotide phosphorylase/polyadenylase [Streptococcus suis
           05ZYH33]
 gi|253752584|ref|YP_003025725.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis SC84]
 gi|253754410|ref|YP_003027551.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis P1/7]
 gi|253756344|ref|YP_003029484.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis
           BM407]
 gi|187611303|sp|A4VXQ4|PNP_STRSY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611308|sp|A4W401|PNP_STRS2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145690387|gb|ABP90893.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Streptococcus suis 05ZYH33]
 gi|251816873|emb|CAZ52520.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis SC84]
 gi|251818808|emb|CAZ56648.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis
           BM407]
 gi|251820656|emb|CAR47416.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis P1/7]
 gi|292559196|gb|ADE32197.1| Polyribonucleotide nucleotidyltransferase [Streptococcus suis GZ1]
 gi|319758995|gb|ADV70937.1| polynucleotide phosphorylase/polyadenylase [Streptococcus suis
           JS14]
          Length = 739

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 87/247 (35%), Gaps = 28/247 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   + +   
Sbjct: 317 VRPDGRRVDEIRPLDAEVDFLPNVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDDEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIID 115
                 Y     S G+  +     G  G R      +  RAL  V+  L       I + 
Sbjct: 377 KRFLHHYNFPQYSVGSTGR----YGAPGRREIGHGALGERALEQVLPSLEDFP-YAIRLV 431

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V++++G +  A+IT   +AL                   +K  VA I+ G++      
Sbjct: 432 AEVLESNGSSSQASITAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNY 478

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I  +Q   +    +       L  AK    +++
Sbjct: 479 TVLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIDGITPQILEEALAQAKKARFEIL 537

Query: 232 KLQKDVI 238
            + +  I
Sbjct: 538 DVIEATI 544



 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 85/231 (36%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
           ++ +    V+K A G+ +V++GD+ +LT A + +K      +     +       G  P 
Sbjct: 14  KLVVETGQVAKQANGAVVVRYGDSTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR    +    R+I R +R +         Q+I        D     A
Sbjct: 73  --GGWMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDPDASAPMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +  G + G  I++ D  +     ++
Sbjct: 128 AMFGSSLALA-------------ISDIPFNGPIAGVQVGYVNGELIINPDQAQQEASLLE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                     I  V+  A+    S++     L      I +L+  Q  +++
Sbjct: 175 LTVAGNKDA-INMVESGAKE--LSEEVMLEALLKGHAAIQELLDFQNQIVA 222


>gi|81301249|ref|YP_401457.1| polynucleotide phosphorylase/polyadenylase [Synechococcus elongatus
           PCC 7942]
 gi|123556249|sp|Q31KE9|PNP_SYNE7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81170130|gb|ABB58470.1| Polyribonucleotide nucleotidyltransferase [Synechococcus elongatus
           PCC 7942]
          Length = 716

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 95/251 (37%), Gaps = 29/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----T 54
           +R+ GR+ +Q+R IS    +      GS L + G T +L+ ATL         +     T
Sbjct: 322 VRVDGRKLDQVRPISSQVGLLPPRVHGSGLFQRGLTQVLSIATLGTPGDAQELDDLHPDT 381

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +  ++   Y M P S G      +   R+ G       +  RAL  V+         I +
Sbjct: 382 QKRYLH-HYNMPPYSVGETRPMRSPGRREIGHG----ALAERALLPVLPSKEEFPYVIRV 436

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V+ ++G T   ++ G+ +AL D                 +K  V+  + G++     
Sbjct: 437 VSEVLSSNGSTSMGSVCGSTLALMDAGV-------------PIKKPVSGAAMGLIREGDE 483

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     TD G I  +Q   +      +     +N AK     +
Sbjct: 484 YRVLTDIQGIEDFLGDMDFKVAGTDQG-ITALQMDMKIHGLPLEIIADAINQAKPARLHI 542

Query: 231 IKLQKDVISNE 241
           +    + I+  
Sbjct: 543 LNKMLEAIATP 553



 Score = 98.6 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 89/233 (38%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R+I L     +  A GS L+  GDT +L  A   T  E +        +       G +P
Sbjct: 13  RDIRLELGLFAPQAGGSVLISSGDTAVLVAATRSTAREGIDFLPLTVDYEERMYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   GR   R+    R+I R LR +         Q++     +        
Sbjct: 73  ---GGFLRRE---GRPPERATLTSRLIDRPLRPLFPSWLRDDLQVVATTLSMDETVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA +A                      G +AA+  G++    I++  Y E    D+
Sbjct: 127 LAVTGASIATLVA-------------KIPFYGPMAAVRVGLVGDDFIINPTYREIEKGDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     T +G ++ V+  A +    +      ++   + + +LIK Q+ +++ 
Sbjct: 174 DLVVAGTPAG-VIMVEAGANQ--LPEADVIEAIDFGYEAVQELIKAQQSLLAE 223


>gi|315634794|ref|ZP_07890076.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter segnis
           ATCC 33393]
 gi|315476346|gb|EFU67096.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter segnis
           ATCC 33393]
          Length = 742

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +        +   +  
Sbjct: 347 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 406

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 407 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPTLAEFPYVVRVVSE 462

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 463 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDDKFVV 509

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 510 LSDILGDEDHLGDMDFKVAGTRQG-VTALQMDIKIEGITAEIMQIALNQAKSARMHILGV 568

Query: 234 QKDVI 238
            +  I
Sbjct: 569 MEQAI 573



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 75/230 (32%), Gaps = 27/230 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +         ++E    +     +   T   G +P 
Sbjct: 48  VTLETGAIARQATAAVMASMDDTTVFVAVVAKKDVKEGQDFFPLTVNYQERTYAAGRIP- 106

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q++     +         
Sbjct: 107 --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQISPDLV 161

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 162 AMIGASAALS-------------LSGVPFNGPIGAARVGFINDQFVLNPTINEQKQSRLD 208

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                TD   ++     +E    +++   A +     +   +I+  K+++
Sbjct: 209 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVYGHQQQQVVIEAIKELV 255


>gi|225018458|ref|ZP_03707650.1| hypothetical protein CLOSTMETH_02405 [Clostridium methylpentosum
           DSM 5476]
 gi|224948767|gb|EEG29976.1| hypothetical protein CLOSTMETH_02405 [Clostridium methylpentosum
           DSM 5476]
          Length = 722

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 78/228 (34%), Gaps = 26/228 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWI- 59
           R+ GR  +++R ++    +     GS L   G T +L+ AT         +         
Sbjct: 334 RVDGRGMDEIRPLAAEVGLLPRVHGSGLFTRGQTQVLSIATLGPVSDEQRLDGIDENTFK 393

Query: 60  --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  RAL  V+         I +  +
Sbjct: 394 RYMHNYNFPSYSVGETKPSRGPGRREIGHG----ALAERALVPVLPSEEEFPYAIRVVSE 449

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           V+ ++G T   +I G+ +AL D                 +K  VA ISCG++        
Sbjct: 450 VLSSNGSTSQGSICGSTLALMDAGV-------------PIKAPVAGISCGLITEGDRFMT 496

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +VD+   ED   D+D     T  G I  +Q   +    + +       
Sbjct: 497 MVDIQGLEDFFGDMDFKVGGTHKG-ITAIQVDIKIDGLTPEIIAEAFE 543



 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 82/224 (36%), Gaps = 30/224 (13%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           RE+ +    +   A GSC V++G+T ++   T      E V  +  +  +       G +
Sbjct: 34  RELIVETGKTSELANGSCWVRYGETVVMANVTMSAKPREGVDFFPLSVDYEEKLYAVGKI 93

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+ +KRE+   R   R+    R+I R +R +          ++        D    
Sbjct: 94  P---GSFLKRES---RPSERAILTSRVIDRPIRPLFPKDMRNDVSVVATVLATDVDNSPE 147

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+T   +A+                     G VA++S G++ G  +++ +  E +  D
Sbjct: 148 VVAMTAVAIAIS-------------ISDIPWNGPVASVSVGLVDGKFVLNPNIEERAKSD 194

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           +D     +    IV ++  A            ML+       +L
Sbjct: 195 LDLTVASSGE-KIVMIEAGANEV-----DDKTMLDAIMTGHEEL 232


>gi|78358207|ref|YP_389656.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|123754803|sp|Q30WI5|PNP_DESDG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78220612|gb|ABB39961.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 750

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 88/249 (35%), Gaps = 27/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR    +R I +       A GS +   G+T  L   TL         ++  G +T
Sbjct: 321 LRIDGRDTKTVRPIIIEAGALPRAHGSAIFSRGETKSLVVTTLGSTTDEQRMDSLTGDVT 380

Query: 61  ----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G     E    R   R      +  RALR V+         + +  
Sbjct: 381 KRFMLHYNFPPYSVG-----EVKPVRVSRREIGHGALAERALRPVLPSPDSFPFTLRVVS 435

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + ++++G +  AA+ G  ++L D                 +K  VA I+ G++       
Sbjct: 436 ETMESNGSSSMAAVCGGSLSLMDAGV-------------PVKAPVAGIAMGLIKEDDQFI 482

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G +  VQ   +      +     L  A++    ++ 
Sbjct: 483 VLTDILGDEDALGDMDFKIAGTAEG-VTAVQMDIKIDGLPAEVMGRALAQAREARLHILN 541

Query: 233 LQKDVISNE 241
               V+   
Sbjct: 542 EMAKVLPEP 550



 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 83/229 (36%), Gaps = 27/229 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           EI +    ++  A+G+  ++ G T +L T     LE ++  +     +       G +P 
Sbjct: 18  EIIMETGRLANQADGAVWIQCGGTVVLCTVCTQPLEREISFFPLVVDYTEKMYAAGRIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR   R   + R+I R LR +         QI+ +      +  +   
Sbjct: 77  --GSFFRREI--GRPSERETLVSRLIDRPLRPLFPKGFTNEVQILANVISADQENDSDVL 132

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+  A+                S   +  VA      + G  +++    E      D
Sbjct: 133 ALCGSSAAV-------------MLSSVPFEAPVAGARVCRIDGEFVLNPTITE--AAKAD 177

Query: 189 AN-FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            N  V  +   +V V+G  E     ++     L  A   +  +I +Q+ 
Sbjct: 178 LNLVVAANRDALVMVEG--EADFVPEEVIAQALEWAHREVQPIIDMQEK 224


>gi|308461535|ref|XP_003093059.1| hypothetical protein CRE_13733 [Caenorhabditis remanei]
 gi|308251715|gb|EFO95667.1| hypothetical protein CRE_13733 [Caenorhabditis remanei]
          Length = 712

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 82/239 (34%), Gaps = 20/239 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--------TTATLEEKVPMWIR 52
           +R  GR+    R I++   + K   G  + + G T ++          A   + V   + 
Sbjct: 306 IRCDGRKITDFRPITIQVDMYKKLHGCSMFQRGQTQVMSTVTFDSPAAAFHPDSVAQLLG 365

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
           + +       Y     +        + + R+ G       +  +AL+++           
Sbjct: 366 SQRKKSFMLHYEFPSFAINEVGISRSSNRREIGHG----ALAEKALKNLFP-KDFPYAT- 419

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            + C V++++G +  A++ G  +AL D    M+  +    +  +   +            
Sbjct: 420 RLACQVLESNGSSSMASVCGGSLALFDAGVPMKSAAAGVAIGLITDQNEPDSKY-----K 474

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
            + D+   ED   D+D     T +G     Q   +    ++      L  A+  I  ++
Sbjct: 475 VLTDILGIEDYAGDMDFKIAGTKNG-FTAAQLDVKNDGLTRQQLKESLQAARSGIDHVL 532


>gi|189184267|ref|YP_001938052.1| polynucleotide phosphorylase/polyadenylase [Orientia tsutsugamushi
           str. Ikeda]
 gi|226702671|sp|B3CTX1|PNP_ORITI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|189181038|dbj|BAG40818.1| polyribonucleotide nucleotidyltransferase [Orientia tsutsugamushi
           str. Ikeda]
          Length = 736

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 97/247 (39%), Gaps = 27/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+  R  +++R I     +     GS L   GDT  L T TL    +E++   +   +  
Sbjct: 316 RIGNRAIDEIRPIICEAGLFNTVHGSALFTRGDTQSLATITLGSSTDEQIVEQLNKCERQ 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
               +Y  LP S G      A S R+ G       +  +A++ V+    +    I I  +
Sbjct: 376 NFLLDYIFLPYSVGEISPLRAASRREIGHGW----LAKKAIQLVIPSKDVFPYTIRIVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-----Y 172
           + Q+DG +  A +  A ++L +                 +K HVA I+ G++ G      
Sbjct: 432 ITQSDGSSSMATVCSASLSLMEAGV-------------PIKTHVAGIAMGLVLGEGNKFE 478

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T +G I  +Q   +    +     +    AK  I  ++ 
Sbjct: 479 ILSDISGCEDHLGDMDFKVASTKNG-ITALQLDIKVQGINLSMIESTFRQAKIGINHILN 537

Query: 233 LQKDVIS 239
           +  + IS
Sbjct: 538 VMNNTIS 544



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 85/226 (37%), Gaps = 35/226 (15%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           +++ A+G+ L   G+T +L T   +    + +  +     +  +    G +P   G  +K
Sbjct: 23  IARNADGAVLASMGNTSVLCTVVFDKNTKKDIDFFPLGVYYREMAYAAGKIP---GGFIK 79

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGA 133
           +E   G+       + R+I R++R + D +     Q+I  C V+  D        AI G+
Sbjct: 80  KE---GKFSEYEVLVSRLIDRSIRPLFDSNFRNDTQVI--CTVMSYDPRYSPDILAIIGS 134

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI--DVDANF 191
             AL                   +   + A   G++    I++     D+T   ++D   
Sbjct: 135 SAALAISGI-------------PIVKPIGAARVGIVNDEFILNP-VIHDNTGVNELDLVV 180

Query: 192 VMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             T DS  ++E Q         ++   A +      +  +I   ++
Sbjct: 181 AATFDSVTMIEAQA----CEIDEEKMLAAIEFGYKSLKPVINAIEE 222


>gi|56751675|ref|YP_172376.1| polynucleotide phosphorylase/polyadenylase [Synechococcus elongatus
           PCC 6301]
 gi|81561823|sp|Q5N1G4|PNP_SYNP6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|56686634|dbj|BAD79856.1| polyribonucleotide nucleotidyltransferase [Synechococcus elongatus
           PCC 6301]
          Length = 716

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 95/251 (37%), Gaps = 29/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----T 54
           +R+ GR+ +Q+R IS    +      GS L + G T +L+ ATL         +     T
Sbjct: 322 VRVDGRKLDQVRPISSQVGLLPPRVHGSGLFQRGLTQVLSIATLGTPGDAQELDDLHPDT 381

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +  ++   Y M P S G      +   R+ G       +  RAL  V+         I +
Sbjct: 382 QKRYLH-HYNMPPYSVGETRPMRSPGRREIGHG----ALAERALLPVLPSKEEFPYVIRV 436

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V+ ++G T   ++ G+ +AL D                 +K  V+  + G++     
Sbjct: 437 VSEVLSSNGSTSMGSVCGSTLALMDAGV-------------PIKKPVSGAAMGLIREGDE 483

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     TD G I  +Q   +      +     +N AK     +
Sbjct: 484 YRVLTDIQGIEDFLGDMDFKVAGTDQG-ITALQMDMKIHGLPLEIIADAINQAKPARLHI 542

Query: 231 IKLQKDVISNE 241
           +    + I+  
Sbjct: 543 LNKMLEAIATP 553



 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 88/233 (37%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R+I L     +  A GS L+  GDT +L  A   T  E +        +       G +P
Sbjct: 13  RDIRLELGLFAPQAGGSVLISSGDTAVLVAATRSTAREGIDFLPLTVDYEERMYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   GR   R+    R+I R LR +         Q++     +        
Sbjct: 73  ---GGFLRRE---GRPPERATLTSRLIDRPLRPLFPSWLRDDLQVVATTLSMDETVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A TGA +A                      G +AA+  G++    I++  Y E    D+
Sbjct: 127 LAATGASIATLVA-------------KIPFYGPMAAVRVGLVGDDFIINPTYREIEKGDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     T +G ++ V+  A +    +      ++   + + +LIK Q+ +++ 
Sbjct: 174 DLVVAGTPAG-VIMVEAGANQ--LPEADVIEAIDFGYEAVQELIKAQQSLLAE 223


>gi|322386167|ref|ZP_08059800.1| polyribonucleotide nucleotidyltransferase [Streptococcus cristatus
           ATCC 51100]
 gi|321269747|gb|EFX52674.1| polyribonucleotide nucleotidyltransferase [Streptococcus cristatus
           ATCC 51100]
          Length = 732

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           L +  I
Sbjct: 539 LIEATI 544



 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 91/232 (39%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT AT+ +K      +     +       G  P
Sbjct: 13  RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        D   + 
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S+D     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKDA-INMVESGAKE--LSEDIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|58266980|ref|XP_570646.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134110456|ref|XP_776055.1| hypothetical protein CNBD1030 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258723|gb|EAL21408.1| hypothetical protein CNBD1030 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226879|gb|AAW43339.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 262

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 89/242 (36%), Gaps = 21/242 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWI 59
           +R   R+  ++R  S        ++GS     G T +  +     +     + +     +
Sbjct: 14  LRQDARRPYELRSTSFQLSTHSSSDGSSTATQGLTTVEVSVFGPREPRNRGLASHDRAVV 73

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           + E G++P + G   +R     R   R QEI   I +    V+        +I I   V+
Sbjct: 74  SVEVGVVPWAAGAGARRT----RGDKRLQEIGAAIRQTFEPVIMTHLYPRSEIAIHVQVL 129

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
            ADGG    +I    +AL D    + D             +V++IS G+    P++DL  
Sbjct: 130 SADGGILPTSINATTLALIDAGIALLD-------------YVSSISIGLHLLQPLLDLSQ 176

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            E+S +       +  SG I   Q          D F  ML L  +    L +    V+ 
Sbjct: 177 PEESDLPSLVIASLPSSGKITLAQM---ETRLHVDRFEEMLTLGVEACKVLKEEMDGVVK 233

Query: 240 NE 241
           + 
Sbjct: 234 DR 235


>gi|157376516|ref|YP_001475116.1| polynucleotide phosphorylase/polyadenylase [Shewanella sediminis
           HAW-EB3]
 gi|257096709|sp|A8FYR5|PNP_SHESH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157318890|gb|ABV37988.1| Polyribonucleotide nucleotidyltransferase [Shewanella sediminis
           HAW-EB3]
          Length = 704

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 92/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+ + +R +++   V     GS L   G+T  L T TL  +      ++  G  T 
Sbjct: 317 RIDGREPDMVRGLNVMAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKVDSIMGEYTN 376

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      ++  R + +V+  +      + +  +
Sbjct: 377 RFMLHYNFPPYSVGETGFVGSPKRREIGHG----KLAWRGINAVMPSAEEFPYSVRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     L  A      ++ +
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGINKEIMQIALQQAYGARVHILNV 538

Query: 234 QKDVISNE 241
               I   
Sbjct: 539 MDQAIGEH 546



 Score = 78.6 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 70/208 (33%), Gaps = 27/208 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A+ + L   GDT +L T       E     +     +   T   G +P 
Sbjct: 18  VTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFPLTVNYQEKTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+II    +  +      
Sbjct: 77  --GGFFKRE---GRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDVI 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G +     G   G  +++ +  +    D+D
Sbjct: 132 SMIGTSAALA-------------ISGLPFNGPLGVARVGYTDGEYVLNPNVSQLVDSDLD 178

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHF 216
                T  G ++ V+  +E A   ++  
Sbjct: 179 LIVAGTQ-GAVLMVE--SEAAALPEEVM 203


>gi|258404622|ref|YP_003197364.1| polynucleotide phosphorylase/polyadenylase [Desulfohalobium
           retbaense DSM 5692]
 gi|257796849|gb|ACV67786.1| polyribonucleotide nucleotidyltransferase [Desulfohalobium
           retbaense DSM 5692]
          Length = 742

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 90/245 (36%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R++++         GS +   G+T +L+ ATL    +E+    +    + 
Sbjct: 322 RIDGRDLTTVRDLNIETSSLPRTHGSAIFARGETKVLSVATLGSSRDEQRIEMLDGELNK 381

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G        + R+ G       +  RAL  V+         + +  +
Sbjct: 382 RFMLHYNFPPYCVGEVKMMRGPARREIGHG----ALAERALTPVLPTEDEFPFTMRVVSE 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           V++++G +  A + G  ++L D                 +   VA I+ G++        
Sbjct: 438 VMESNGSSSMATVCGTSLSLMDAGV-------------PVSAPVAGIAMGLIKEEDEFLV 484

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q  ++ A    +     LN A D    ++  
Sbjct: 485 LTDILGDEDHLGDMDFKVAGTAEG-ITAIQMDSKIAGIPPEVLKRALNQAMDARLHILDN 543

Query: 234 QKDVI 238
              V+
Sbjct: 544 MNTVL 548



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 86/235 (36%), Gaps = 28/235 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           +I +    ++  A G+  V+ G T +L TA    +   +        +  ++   G +P 
Sbjct: 20  DILIETGRLANQANGAVWVQSGGTVVLVTAVTQPVTRDIDFMPLVVDYQEMSYASGRIP- 78

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             GN  +RE   GR   R   + R+I R +R +         QII        +      
Sbjct: 79  --GNYFRREI--GRPSERETLVSRLIDRPIRPLFPAGFRDEVQIIATVLSAAPEVNPDVL 134

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+TGA  A+H                    G +  I  G + G  +++    E      D
Sbjct: 135 ALTGASAAMH-------------ISDIPFDGPIGGIRVGQVDGEFVLNPSQNELENS--D 179

Query: 189 ANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            N V+  S   +  V+G        +D     +    +++  L++LQ + +  ++
Sbjct: 180 LNLVLAGSRDAVTMVEGGGNFVP--EDRMAEAITWGHEQVQALLQLQDE-LREKI 231


>gi|125718838|ref|YP_001035971.1| polynucleotide phosphorylase/polyadenylase [Streptococcus sanguinis
           SK36]
 gi|187611302|sp|A3CQG6|PNP_STRSV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|125498755|gb|ABN45421.1| Polyribonucleotide nucleotidyltransferase, putative [Streptococcus
           sanguinis SK36]
          Length = 733

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           L +  I
Sbjct: 539 LIEATI 544



 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT AT+ +K      +     +       G  P
Sbjct: 13  RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R +         Q+I        D   + 
Sbjct: 73  ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGKFIINPSKEQKEVSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S+D     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKDA-INMVESGAKE--LSEDIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|300788163|ref|YP_003768454.1| polyribonucleotide nucleotidyltransferase [Amycolatopsis
           mediterranei U32]
 gi|299797677|gb|ADJ48052.1| polyribonucleotide nucleotidyltransferase [Amycolatopsis
           mediterranei U32]
          Length = 753

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 93/253 (36%), Gaps = 30/253 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R +S    V   A GS L + G+T +L   TL     E+    +    H
Sbjct: 345 IRMDGRGLTDIRSLSAEVAVIPRAHGSALFERGETQILGVTTLNMLRLEQQIDSLSPETH 404

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 405 KRYMHHYNFPPFSTGETGRVGSPKRREIGHGM----LAERALVPVLPKRDEFPYAIRQVS 460

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
           + + ++G T   ++  + +AL++                 LK  VA I+ G++       
Sbjct: 461 EALGSNGSTSMGSVCASTMALYNAGV-------------PLKAPVAGIAMGLVSDEVDGE 507

Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T    I  +Q   +      +   A L  AKD   
Sbjct: 508 TRYVALTDILGAEDALGDMDFKVAGTKDI-ITALQLDTKLDGIPSEVLAAALKQAKDARL 566

Query: 229 DLIKLQKDVISNE 241
            ++++  + I + 
Sbjct: 567 TILEVIAEAIDSP 579



 Score = 48.5 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 71/244 (29%), Gaps = 38/244 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM-----WIRNTKHGWITAEYGM 65
           R +      ++K A G+ +    +  +L +AT   K P      +             G 
Sbjct: 24  RTVRFETGRLAKQAAGAVVAYLDEETMLLSATTASKHPKDHFDFFPLTVDVEERMYAAGR 83

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P +     +RE   GR    +    R+I R LR           Q++I    +  D   
Sbjct: 84  IPGA---FFRRE---GRPSTDAILTCRLIDRPLRPSFTDGLRNEIQVVITVQSLNPDDPY 137

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G V  +   ++    +    + +    
Sbjct: 138 DVLAINAASASTQIAGL-------------PFSGPVGGVRVALVEDQWVAFPTWSQLEKA 184

Query: 186 DVDANF---VMTDSGHIVEVQGSAERATFS--------QDH--FFAMLNLAKDRIADLIK 232
             +      ++ D   I+ V+      T           D     A L  +K  I  L +
Sbjct: 185 TFNMVVAGRIVGDDVAIMMVEAEGTEHTLDLIAAGGKAPDEAAVAAGLEASKPFIKVLCE 244

Query: 233 LQKD 236
            Q+ 
Sbjct: 245 AQQQ 248


>gi|197301798|ref|ZP_03166868.1| hypothetical protein RUMLAC_00524 [Ruminococcus lactaris ATCC
           29176]
 gi|197299238|gb|EDY33768.1| hypothetical protein RUMLAC_00524 [Ruminococcus lactaris ATCC
           29176]
          Length = 695

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 83/250 (33%), Gaps = 26/250 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
           R  GR  +Q+R ++    +     GS +   G T  + T T          +        
Sbjct: 312 RPDGRAIDQIRPLAAEVDLISRVHGSAMFTRGQTQ-ICTVTTLAPLSEAQRLDGLDETET 370

Query: 60  TAEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           T  Y M   +  +    E    R  G R      +  RAL  V+   A     I    + 
Sbjct: 371 TKRY-MHHYNFPSYSVGETRPSRGPGRREIGHGALAERALLPVLPSEAEFPYAIRTVSET 429

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY------ 172
            +++G T  A++  + ++L                   +K  VA IS G++ G       
Sbjct: 430 FESNGSTSQASVCASSMSLMSAGV-------------PIKSAVAGISAGLVTGETDDDYL 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI- 231
            + D+   ED   D+D     T  G I  +Q   +    ++      +   K     ++ 
Sbjct: 477 VLTDIQGLEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAIAATKKARTYIMD 535

Query: 232 KLQKDVISNE 241
           ++    I+  
Sbjct: 536 EVMSKAIAEP 545



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 76/219 (34%), Gaps = 27/219 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    V+K A G+ L+ +GDT +L TAT      + +  +  + ++       G +
Sbjct: 12  RTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASDKPRDGIDFFPLSVEYNERMYSVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 72  P---GGFNKRE---GKASENAILTDRVIDRPMRPLFPKDYRNDVTLENLVMAVDQDCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA +A                      G ++    G++ G  + +    +    D
Sbjct: 126 LTAMLGAALA-------------TSISDIPFDGPISTTQVGLVDGEFVFNPTAAQKVVSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
           +      T    ++ ++  A+     +D     +  A +
Sbjct: 173 LALTVASTKE-KVIMIEAGAKEVP--EDKMIEAIFAAHE 208


>gi|166368080|ref|YP_001660353.1| polynucleotide phosphorylase/polyadenylase [Microcystis aeruginosa
           NIES-843]
 gi|189037309|sp|B0JYC3|PNP_MICAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|166090453|dbj|BAG05161.1| polyribonucleotide nucleotidyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 717

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 88/251 (35%), Gaps = 28/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----T 54
           +R+ GRQ +++R IS    V  +   GS L   G T +L+ ATL                
Sbjct: 322 VRVDGRQLDEVRPISCRVGVLPRRVHGSGLFNRGLTQVLSIATLGTPGDAQDLGDDLHPE 381

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y   P S G      +   R+ G       +  RA+  V+         + +
Sbjct: 382 DEKRYLHHYNFPPFSVGETRPMRSPGRREIGHG----ALAERAIVPVLPPQEEFPYVLRV 437

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V+ ++G T   ++ G+ +AL D                 LK  V+  + G++     
Sbjct: 438 VSEVLSSNGSTSMGSVCGSTLALMDAGV-------------PLKKPVSGAAMGLIKEGEE 484

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     TDSG I  +Q   +    S +     +  A      +
Sbjct: 485 VRILTDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKIPGLSMEVVAKAIEQALPARKHI 543

Query: 231 IKLQKDVISNE 241
           ++     +   
Sbjct: 544 LEKMLATLEKP 554



 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 92/231 (39%), Gaps = 26/231 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           R+I L   +    A GS L++ G+T +L TAT     E V        +       G +P
Sbjct: 13  RDIRLKIGLLAPQAGGSVLIQSGETAVLVTATTAKAREGVDFLPLTVDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   GR   ++    R+I R LR +         Q++     +  +     
Sbjct: 73  ---GGFLRRE---GRPPEKAILTGRLIDRPLRPLFPNWMRDDIQVVATTLSMDEEVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA VA+                    +G +AA+  G+L    I++  Y E    ++
Sbjct: 127 LAVTGASVAVLLAGI-------------PFQGPMAAVRVGLLGDEFIINPTYKEIHNGEL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D     +  G +V ++  A +    +      ++   + + DLI  Q+++I
Sbjct: 174 DLVVAGSPEG-VVMIEAGANQ--LPERDIIEAIDFGYEAVRDLITAQRELI 221


>gi|302342332|ref|YP_003806861.1| polyribonucleotide nucleotidyltransferase [Desulfarculus baarsii
           DSM 2075]
 gi|301638945|gb|ADK84267.1| polyribonucleotide nucleotidyltransferase [Desulfarculus baarsii
           DSM 2075]
          Length = 749

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 90/249 (36%), Gaps = 27/249 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+ GR   ++R I     V     GS L   G+T  L  ATL     E+++         
Sbjct: 317 RIDGRTVTEVRPIDCEVGVLPRTHGSALFTRGETQALVVATLGTAGDEQRIESVTEGDVF 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +    + R+ G       +  RA+  ++         +    
Sbjct: 377 RHFLLHYNFPPYSVGEAKRLGGPNRRELGHG----ALARRAVEKILPAKEDFPYCLRCVS 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G+ +AL D                 +   VA ++ G++       
Sbjct: 433 EITESNGSSSMASVCGSSMALMDAGV-------------PVSEAVAGVAMGLIKEGDKMV 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     +  G I  VQ   + +  S++     L  A++    ++ 
Sbjct: 480 VLTDIMGDEDHLGDMDFKVAGSARG-ISAVQMDIKISGISKEIMGQALKQAREGRLHILG 538

Query: 233 LQKDVISNE 241
             +  I N 
Sbjct: 539 EMQKAIDNP 547



 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 83/230 (36%), Gaps = 26/230 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           RE  +    ++K A G+  V++G+T +L T   +  V           +T +Y  +  + 
Sbjct: 12  REFVIETGKIAKQASGAVWVQYGETVVLVTVVGDTNV---REGIDFLPLTVDYQEMSYAA 68

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G    N  +RE   GR   +     R+I R +R  ++       QII     +       
Sbjct: 69  GRIPGNFFRREI--GRPSEKETLTSRLIDRPVRPRMNKGWTFETQIIATVMSVDRVNEPD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+TGA  AL                     G +A +  G + G  +++    +    D
Sbjct: 127 VMAMTGASAAL-------------MVSDVPFDGPIAGVRVGRVDGQLVLNPTAEQIEKSD 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           ++   V      +  V+G +      +D     +      +  L+ +Q++
Sbjct: 174 LEL-LVAGSRDAVCMVEGGS--LMLGEDEILEAIWFGHAGLQPLLDIQEE 220


>gi|121710390|ref|XP_001272811.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
           putative [Aspergillus clavatus NRRL 1]
 gi|119400961|gb|EAW11385.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
           putative [Aspergillus clavatus NRRL 1]
          Length = 269

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 8/149 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           +RL GR+ N++R +S     +  + GS  +  G+T ++ +     +              
Sbjct: 14  LRLDGRRWNELRLLSAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73

Query: 58  --WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
              +  +  +   +  +R +R   S RQ  R   I  ++  A +S +         I I 
Sbjct: 74  GAIVEVDVNVAGFAGVDRKRRAGGSDRQSSR---IATILRSAFQSHLHTHLYPHSTISIH 130

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHM 144
             V+ +DG    AA+    +AL D    M
Sbjct: 131 VSVLSSDGSLLAAAVNACTLALVDAGIPM 159


>gi|328944853|gb|EGG39013.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK1087]
          Length = 733

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           L +  I
Sbjct: 539 LIEATI 544



 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT AT+ +K      +     +       G  P
Sbjct: 13  RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R +         Q+I        D   + 
Sbjct: 73  ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQIGYVDGEFIINPSKEQKEVSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S+D     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKDA-INMVESGAKE--LSEDVMLEALLKGHEAVKELIAFQEEIVA 222


>gi|325697461|gb|EGD39347.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK160]
          Length = 733

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           L +  I
Sbjct: 539 LIEATI 544



 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT AT+ +K      +     +       G  P
Sbjct: 13  RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R +         Q+I        D   + 
Sbjct: 73  ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S+D     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKDA-INMVESGAKE--LSEDVMLEALLKGHEAVKELIAFQEEIVA 222


>gi|324992451|gb|EGC24372.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK405]
 gi|327462786|gb|EGF09108.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK1057]
          Length = 733

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 82/241 (34%), Gaps = 26/241 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538

Query: 233 L 233
           L
Sbjct: 539 L 539



 Score = 88.6 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 88/231 (38%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT AT+ +K      +     +       G  P
Sbjct: 13  RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R +         Q+I        D   + 
Sbjct: 73  ---GGFNKRE---GRPSMDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           +     T    I  V+  A+    S+D     L      + +LI  Q++++
Sbjct: 174 ELTVAGTKDA-INMVESGAKE--LSEDIMLEALLKGHQAVKELIAFQEEIV 221


>gi|195112939|ref|XP_002001029.1| GI10566 [Drosophila mojavensis]
 gi|193917623|gb|EDW16490.1| GI10566 [Drosophila mojavensis]
          Length = 770

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 88/249 (35%), Gaps = 17/249 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           R  GR  + +R+I+    + K   GS L + G T +  T +L+        +T      G
Sbjct: 353 RCDGRDYDSLRKINCQVDMYKPLHGSALFQRGQTQVFCTVSLDSPESAMKLDTLAALDSG 412

Query: 58  WITA-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
            + A      Y   P +TG   +     G  G R      +  R+L   +         +
Sbjct: 413 GLKAKNFMLHYEFPPYATGEVGR----IGPLGRRELGHGALAERSLLPTLPND--YPFTV 466

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            +  +V++++G +  A++ G  +AL D    +   +    +  V K      +  +    
Sbjct: 467 RLTSEVLESNGSSSMASVCGGSLALMDAGVPITAPAAGVAIGLVTKYENND-TKHLQDYR 525

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G    +Q   +            L  A D  + ++ 
Sbjct: 526 ILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSKILD 584

Query: 233 LQKDVISNE 241
           +  + I   
Sbjct: 585 IMGETIREP 593



 Score = 84.0 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 86/235 (36%), Gaps = 32/235 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R+++++     ++A G+ + + GDT ++ TA  + K            +  +Y +   ++
Sbjct: 48  RKMTISSGKLARFANGTAVCQMGDTAVMVTAVAKAKPTP---GQNFMPLVVDYRLKNAAS 104

Query: 71  GNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
           G R+    +    G   +EI   R+I R+LR +         Q++ +   + A       
Sbjct: 105 G-RIPMNFMRRELGPSEKEILSARLIDRSLRPLFAKDYRNETQLVCNMLAMDAVHSPDVL 163

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           AI  A +AL                     G + A+  G+  G  +++    E  +  +D
Sbjct: 164 AINAASMALS-------------LSDIPWNGPIGAVRVGLSDGEVLINPTRRELQSSQLD 210

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-------IADLIKLQKD 236
                T    +V ++G              +L   K         I ++ +LQK 
Sbjct: 211 LVVSATKQNLVVMLEGKGNVVL-----MQDLLKAIKQGTREAQFIIHEIERLQKA 260


>gi|119510054|ref|ZP_01629194.1| polyribonucleotide nucleotidyltransferase [Nodularia spumigena
           CCY9414]
 gi|119465241|gb|EAW46138.1| polyribonucleotide nucleotidyltransferase [Nodularia spumigena
           CCY9414]
          Length = 718

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 91/233 (39%), Gaps = 26/233 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           R+I L   +    A GS L++ GDT +L TAT     E +        +       G +P
Sbjct: 13  RDIRLKVGLLAPQAGGSVLIESGDTSVLVTATRSKGREGIDFLPLTVDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   GR   ++    R+I R +R +         QII     +        
Sbjct: 73  ---GGIMRRE---GRPPEKTILTSRLIDRPMRPLFPTWLRDDLQIIAFTLSMDELVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA +A                      G +AA+  G++    I++  Y E    D+
Sbjct: 127 LAVTGASIATLMAQI-------------PFNGPMAAVRVGLVGDDFIINPTYAETENGDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     +  G ++ V+  A +    +      ++   + + DLI+ Q+D+++ 
Sbjct: 174 DLIVAGSPHG-VIMVEAGANQ--LPEQDIIEAIDFGYEAVRDLIQAQQDLLAE 223



 Score = 99.0 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 90/247 (36%), Gaps = 20/247 (8%)

Query: 1   MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNT 54
           +R+ GR+ +++R +S    V  K   GS L   G T +L+T TL            ++  
Sbjct: 322 VRVDGRKLDEVRPVSCQVGVLPKRVHGSGLFNRGLTQVLSTCTLGTPGDAQNLNDDLQTD 381

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +       Y   P S G          R+ G       +  RAL  V+         I +
Sbjct: 382 QSKRYLHHYNFPPFSVGETKPMRFPGRREIGHG----ALAERALVPVLPSKEAFPYVIRV 437

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             +V+ ++G T   ++ G+ ++L D    +    +   +  + +G              +
Sbjct: 438 VSEVLSSNGSTSMGSVCGSTLSLMDAGVPILKPVSGAAMGLIKEGDEV---------RVL 488

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED   D+D     TD+G I  +Q   + +  S D     ++ AK     ++   
Sbjct: 489 TDIQGIEDFLGDMDFKVAGTDTG-ITALQMDMKISGLSLDVIAQAVHQAKSARLHILDKM 547

Query: 235 KDVISNE 241
              I   
Sbjct: 548 LQTIQEP 554


>gi|183220916|ref|YP_001838912.1| polynucleotide phosphorylase/polyadenylase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911012|ref|YP_001962567.1| polynucleotide phosphorylase/polyadenylase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|226702658|sp|B0SH22|PNP_LEPBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702659|sp|B0SQH8|PNP_LEPBP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|167775688|gb|ABZ93989.1| Polyribonucleotide nucleotidyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779338|gb|ABZ97636.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase; PNPase) [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 696

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 84/249 (33%), Gaps = 27/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           +R  GR+ +++R+IS    V     GS +   G T  L   TL           +  +K 
Sbjct: 313 IRFDGRKTDEIRQISCEIDVLPGPHGSAVFTRGQTQSLGVMTLGTTSDNQRYETLEGSKE 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +      R+ G       +  RA++ V+         I +  
Sbjct: 373 KNFMLHYNFPAFSVGEVRRNSGPGRREIGHG----NLAERAIKKVLPTQTEFPYVIRLVS 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++++++G +  A++    +AL                   + G V+ I+ G+        
Sbjct: 429 EILESNGSSSMASVCSGTLAL-------------MAGGVPISGAVSGIAMGLFSDEKGRF 475

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +      +     +  A+     ++
Sbjct: 476 AVLSDIAGIEDHFGDMDFKLAGTKKG-ITAFQMDLKVNGLGLEVLQKAIEQAEVGRDHIL 534

Query: 232 KLQKDVISN 240
                 IS+
Sbjct: 535 GEMNKAISS 543



 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 91/233 (39%), Gaps = 28/233 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           I+L     +K A GS + K G+  LL T    E+            +T EY     S G 
Sbjct: 14  ITLETGKWAKQAHGSVVYKTGNLVLLATVCAAEEP---KEGQDFFPLTCEYTEKAYSVGR 70

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KREA   +       + R++ R +R +         Q+++   V+ AD   +  
Sbjct: 71  FPGGYFKREA---KPAEHEVLLSRILDRPIRPMFPEGYFSEVQLLV--QVLSAD---KQV 122

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G  +            +     S    G +A    G + G  I++    E +  D+D
Sbjct: 123 SVQGHAI--------NAASAALSVSSIPFAGPIAGARIGRIGGEFILNPTNEEITKSDLD 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
                T    IV ++G  E +  S++   A L  A++++   + +Q++ ++ +
Sbjct: 175 LVVAGTKDA-IVMIEG--EASEISKEDMMAALRFAQEQLKFAVAMQEE-LAKK 223


>gi|325686903|gb|EGD28928.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK72]
          Length = 733

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           L +  I
Sbjct: 539 LIEATI 544



 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT AT+ +K      +     +       G  P
Sbjct: 13  RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R +         Q+I        D   + 
Sbjct: 73  ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPRKEQKEVSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S+D     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKDA-INMVESGAKE--LSEDIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|302756855|ref|XP_002961851.1| hypothetical protein SELMODRAFT_77425 [Selaginella moellendorffii]
 gi|300170510|gb|EFJ37111.1| hypothetical protein SELMODRAFT_77425 [Selaginella moellendorffii]
          Length = 808

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 87/231 (37%), Gaps = 15/231 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTK 55
           +R  GR  + +R IS +  +   A GS +   G+T  L    L      +++       +
Sbjct: 419 VRSDGRGISDVRPISCSCNLLPRAHGSAIFTRGETQALVAVILGGDNMAQRIDGVTDADE 478

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                 +Y + P S    V R    G    R     R+I R+L  +   S      + ++
Sbjct: 479 VKRFYVQY-VFPHSCVGEVGR---IGPASRREIGHGRLIERSLEPIFP-SKFP-YTVRVE 532

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
             + +++G +  A++ GA++AL D    ++       +  +L       S G +    + 
Sbjct: 533 STITESNGSSSMASVCGAYLALCDAGVPVKCPIAGVAMGLILDPKEYGGSGGPV---ILT 589

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           D+   ED+  D+D     +  G I   Q   +    +       L+ AK  
Sbjct: 590 DILGSEDACGDMDLKVAGSKEG-ITAFQMDLKVQGINLSILKRALSKAKTA 639



 Score = 78.2 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 82/233 (35%), Gaps = 33/233 (14%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-------LEEKVPMWIRNTKHGWITAEY 63
           R+I L      + A G+  +  G+T L TT           + VP+++   +       Y
Sbjct: 77  RQIVLETGSIGRQAGGAVTISDGETILYTTVCTSAEASEPSDFVPLYVHYHE------RY 130

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
               R++G   KRE   G+       I R++ R LR ++         I +   V+  DG
Sbjct: 131 SAAGRTSGGFNKRE---GKPRDSEVFISRLVDRPLRPMIPKGYFHE--IQVLSWVLSYDG 185

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
                        L + L      +        +   VA +  G + G  +++    E +
Sbjct: 186 SH-----------LPEPLAITAAGAALALSDVPVLKPVAGVRVGYINGKYVLNPTASEVT 234

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              +D     T  G ++ ++G       S+D     +   +  +  + K  ++
Sbjct: 235 KSSLDMIMAGTSDG-LLMIEG--YCNLLSEDELVKAVETGQRAVKIICKELEE 284


>gi|195391142|ref|XP_002054222.1| GJ22920 [Drosophila virilis]
 gi|194152308|gb|EDW67742.1| GJ22920 [Drosophila virilis]
          Length = 769

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 87/249 (34%), Gaps = 17/249 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           R  GR  + +R IS    + K   GS L + G T +  T +L+        +T      G
Sbjct: 352 RCDGRDYDSLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSPESAMKLDTLAALDSG 411

Query: 58  WITA-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
            + A      Y   P +TG   +     G  G R      +  R+L   +         +
Sbjct: 412 GLKAKNFMLHYEFPPYATGEVGR----IGPLGRRELGHGALAERSLLPTLPHD--YPFTV 465

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            +  +V++++G +  A++ G  +AL D    +   +    +  V K      +  +    
Sbjct: 466 RLTSEVLESNGSSSMASVCGGSLALMDAGVPVTAPAAGVAIGLVTKYENND-TKHLQDYR 524

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G    +Q   +            L  A D  + ++ 
Sbjct: 525 ILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKSKILD 583

Query: 233 LQKDVISNE 241
           +  + I   
Sbjct: 584 IMGESIKEP 592



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 85/235 (36%), Gaps = 32/235 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R ++++     ++A G+ + + GDT ++ TA  + K            +  +Y +   ++
Sbjct: 47  RNMTISSGKLARFANGTAVCQMGDTAVMVTAVAKAKATP---GQNFMPLVVDYRLKNAAS 103

Query: 71  GNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
           G R+    +    G   +EI   R+I R+LR +         Q++ +   + A       
Sbjct: 104 G-RIPMNFMRRELGPSEKEILSARLIDRSLRPLFAKDYRNETQLVCNMLAMDAVHSPDVL 162

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           AI  A +AL                     G + A+  G+  G  +++    E  +  +D
Sbjct: 163 AINAASMALS-------------LSDIPWNGPIGAVRVGLNDGEVLINPTRRELQSSQLD 209

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-------IADLIKLQKD 236
                T    +V ++G              +L   K         I ++ +LQK 
Sbjct: 210 LVVSATKQNLVVMLEGKGNVVL-----MQDLLKAIKQGTREAQFIIHEIERLQKA 259


>gi|304393828|ref|ZP_07375753.1| polyribonucleotide nucleotidyltransferase [Ahrensia sp. R2A130]
 gi|303294027|gb|EFL88402.1| polyribonucleotide nucleotidyltransferase [Ahrensia sp. R2A130]
          Length = 709

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 87/247 (35%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R+I     +     GS L   G+T  +  ATL           +  T   
Sbjct: 317 RIDGRDLDTVRQIESQVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALTGTYKE 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +    S R+ G      ++  RA+++V+         +    +
Sbjct: 377 NFLLHYNFPPYSVGETGRIGFTSRREIGHG----KLAWRAVKAVLPSKEDFPYTLRAVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A + G  +A  D                 LK  VA I+ G++        
Sbjct: 433 ITESNGSSSMATVCGTSLAFMDAGV-------------PLKAPVAGIAMGLIKEGDDFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    ++D     L  AK     ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTAEG-ITSLQMDIKITGITEDIMKIALEQAKGGRETILNE 538

Query: 234 QKDVISN 240
               ++ 
Sbjct: 539 MSKALTE 545



 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 82/239 (34%), Gaps = 44/239 (18%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHGWITAEYGML 66
           R ++L    V++ A+GS +V +G+T ++     E+K    +        +       G +
Sbjct: 16  RPLTLEAGQVARQADGSVIVTYGETTVMCNVVSEKKPKPHLDFFPLTVNYIEKAYAAGKI 75

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KREA   R       + R+I R +R +         Q+   C V+  D    
Sbjct: 76  P---GGFFKREA---RPSENETLVCRLIDRPIRPLFAEGYKNDTQVT--CTVLSHDMENN 127

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+     AL                     G +A    G++ G  +++ +  E   
Sbjct: 128 PDIVAMIATSAAL-------------TISGVPFSGPIAGARVGLIDGDYVLNPNVDEMPE 174

Query: 185 IDVDANFVMTDSGHIV----------EVQGSAERATFSQDHF----FAMLNLAKDRIAD 229
            D+D     T    ++          EV   A    F  + F     A++ LA+    +
Sbjct: 175 SDLDLIVAGTTDAVLMVESEANVLSEEVMLGA--VMFGHEEFQPVIDAVIQLAEKCAKE 231


>gi|292572117|gb|ADE30032.1| Polyribonucleotide nucleotidyltransferase [Rickettsia prowazekii
           Rp22]
          Length = 745

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 91/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR    +R+I+    +   A GS L   G+T  L + T    +   I ++  G   
Sbjct: 315 IRIDGRSTTDIRQIACEVGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYK 374

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S    +  +A S R+ G      ++  RA+  ++         I +  
Sbjct: 375 ERFMLNYIFPPYSVNEAMPMKAPSRREVGHG----KLAWRAINPILPNKVQFPYSIRVVA 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +  +++G +  A + G+ +AL                   +K  VA I+ G++       
Sbjct: 431 ETTESNGSSSMATVCGSSLALMHAGV-------------PIKAPVAGIAMGLVKESNKFA 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + +          L  A+     +++
Sbjct: 478 VLSDIIGDEDYFGDMDFKVAGTSQG-ITALQMDIKISGIDFKIIQIALEQARLGRLHILE 536

Query: 233 LQKDVISNE 241
               VIS  
Sbjct: 537 QMNKVISKP 545



 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 89/235 (37%), Gaps = 32/235 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
           + ++   +++ A  +  VK G++ LL T  +  KV      +     +  +    G +P 
Sbjct: 16  LEISTGKIARQANAAVTVKMGNSILLCTCVVANKVKDGIGFFPLTINYREMAYSAGKIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--R 126
             G   KRE   G+   R   + R+I R +R +   + +      + C V+  D  T   
Sbjct: 75  --GGFFKRE---GKASDREILVSRLIDRPIRPLFHQAFMHET--HVTCSVLSYDPATPVD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI GA  AL                       VAA   G++ G  +++       T  
Sbjct: 128 ILAIIGASAALS-------------ISPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQ 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           +D     T+   ++ V+  +E    S+D     +    +    +IKL K+ ++ E
Sbjct: 175 LDLVVAGTED-SVMMVE--SEAHLLSEDKMLEAVKFGFESFQTVIKLIKE-LAKE 225


>gi|282889646|ref|ZP_06298186.1| hypothetical protein pah_c003o034 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500473|gb|EFB42752.1| hypothetical protein pah_c003o034 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 694

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 86/234 (36%), Gaps = 26/234 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH-L-LTTATLEEKVPMW--IRNTKH 56
           +R  GR    +R I + + +   A GS L   G+T  + + T   E     +  +     
Sbjct: 315 VRSDGRTSINIRPIDIEQGILPRAHGSSLFTRGETQSVSVCTLGGESMAQRFEDLDGEGS 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +  +   R+ G      ++  RAL++++         I ++ 
Sbjct: 375 RTFYLQYFFPPFSVGEVGRIGSPGRREVGHG----KLAERALQAILPPKEAFPYTIRLES 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++ +++G +  A + G  +A+ +                 +K  VA I+ G++       
Sbjct: 431 NITESNGSSSMATVCGGCLAMMEAGV-------------PVKRPVAGIAMGLILENERFI 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED+  D+D        G I   Q   +    +     A L  AK  
Sbjct: 478 ILSDILGIEDALGDMDFKITGDAEG-ITAFQMDIKVEGITPSIMKAALEQAKKG 530



 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 83/237 (35%), Gaps = 39/237 (16%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLL----TT----ATLEEKVPMWIRNTKHGWITAEY 63
           EI      +++ A G+ LV+ G+T +L          A  E+ +P+ +   +       +
Sbjct: 14  EIVFETGKIARQANGAVLVRSGET-ILFNTACADYDLAPGEDFLPLRVDYQEK------F 66

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
               ++    +KRE   GR   +   + R+I R LR + +       Q++          
Sbjct: 67  SSAGKTVSGFIKRE---GRPSEKETLVSRLIDRPLRPMFENGYYNETQVLSYVWSYDGVN 123

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
                AI GA  AL                   L   V A+  G++ G  +V+       
Sbjct: 124 APEPLAICGASAALV-------------ISDIPLIKPVGAVRVGLIGGKFVVNPTVEHQK 170

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA----DLIKLQKD 236
              +D     T+   ++ ++G       +++     + +    I      L+  QK+
Sbjct: 171 KSKLDLILAGTEDA-VLMIEG--YCDFLTEEQILEAIEIGHQGIKAICETLLAWQKE 224


>gi|23503016|ref|NP_699143.1| polynucleotide phosphorylase/polyadenylase [Brucella suis 1330]
 gi|81751805|sp|Q8FXS9|PNP_BRUSU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|23349057|gb|AAN31058.1| polyribonucleotide nucleotidyltransferase [Brucella suis 1330]
          Length = 714

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 88/247 (35%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR  + +R I     +     GS L   G+T  +  ATL       + +   G    
Sbjct: 317 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++  +      I    +
Sbjct: 377 SFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPAAEQFPYTIRAVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A + G  +AL D                 +   VA I+ G++  G     
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGV-------------PIVRPVAGIAMGLIKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   +    +++     L  AK     ++  
Sbjct: 480 LSDILGDEDYLGDMDFKVAGTEFG-ITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGE 538

Query: 234 QKDVISN 240
               IS+
Sbjct: 539 MAKAISS 545



 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 84/248 (33%), Gaps = 40/248 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R ++L    +++ A+G+ L  +G+T +L T       +     +     +   T   G +
Sbjct: 14  RPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR       + R+I R +R +         Q++I   V+Q D    
Sbjct: 74  P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVIT--VLQHDLENN 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++  A  AL                     G ++    G + G  +++ +  E   
Sbjct: 126 PDILSMVAASAAL-------------TISGVPFMGPISGARVGYIDGEYVLNPNIDEMPE 172

Query: 185 IDVDANFVMTDSGHIV---EVQGSAERATFSQDHF---------FAMLNLAKDRIADLIK 232
             +D     T    ++   E Q   E        F          A++ LA+    +   
Sbjct: 173 SKLDLVVAGTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRD 232

Query: 233 LQKDVISN 240
            Q + +S 
Sbjct: 233 FQPEDLSE 240


>gi|282881124|ref|ZP_06289811.1| polyribonucleotide nucleotidyltransferase [Prevotella timonensis
           CRIS 5C-B1]
 gi|281304928|gb|EFA97001.1| polyribonucleotide nucleotidyltransferase [Prevotella timonensis
           CRIS 5C-B1]
          Length = 766

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 94/242 (38%), Gaps = 28/242 (11%)

Query: 3   LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       IS+    V+K A+GS +V+ G+T LL T    ++ VP            
Sbjct: 2   PDGRT------ISIETGKVAKQADGSAVVRLGNTVLLATVCAAKDAVPGTDFMPLQVDYR 55

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y    R  G   KRE   G+         R++ RALR +   +     ++ +   ++ 
Sbjct: 56  EQYSAAGRFPGGFTKRE---GKPSDNEILTSRLVDRALRPLFPSN--YHAEVYVQIMLLS 110

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           V   D L  +   +           +++ +    + G  +V+  + 
Sbjct: 111 ADG-----------VDQPDALAGLAASAAMACSDIPFDFYISEVRVARINGEYVVNPTFE 159

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +  + D+D     T   +I+ V+G  E    S+      L  A + I  +  +Q++ ++ 
Sbjct: 160 QMKSADMDLMVGATKD-NIMMVEG--EMNEVSELDLIEALKAAHEAIKPMCTVQEE-LNK 215

Query: 241 EV 242
           E+
Sbjct: 216 EL 217



 Score = 98.2 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 87/250 (34%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57
           RL GR+ +++R I           GS +   G+T  L+T TL  K+   +     +  + 
Sbjct: 315 RLDGRKTDEIRPIWCEVSPLPMPHGSAIFTRGETQSLSTCTLGTKLDEKMVDDVLDKSYQ 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  R L+  +         + +   
Sbjct: 375 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRGLKGQIPEDF--PYTVRLVSQ 428

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D    M             K  V+ I+ G++        
Sbjct: 429 ILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVSGIAMGLIKNPGEDKY 475

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G +   Q   +    S +     L  AK     ++
Sbjct: 476 VILSDILGDEDHLGDMDFKTTGTRDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHIL 534

Query: 232 KLQKDVISNE 241
               + +   
Sbjct: 535 GKMLETMPEP 544


>gi|241889884|ref|ZP_04777182.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans ATCC
           10379]
 gi|241863506|gb|EER67890.1| polyribonucleotide nucleotidyltransferase [Gemella haemolysans ATCC
           10379]
          Length = 695

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 86/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R  GR   ++R ++    V     GS L   G T  L   TL    +E++   +   ++
Sbjct: 318 VRPDGRALTEIRPLASRVDVLPRTHGSALFTRGQTQSLGVVTLGNLSDEQIIDDLTQEEN 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G      A   R+ G       +  RAL  V+         I I  
Sbjct: 378 KRFMLHYNFPAFSVGEVGFSRAPGRREIGHG----ALGERALAQVIPSKEDFPYTIRIVS 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++++++G +  A I    +AL                   +K  VA I+ G++       
Sbjct: 434 EILESNGSSSQATICSGSMALMAAGV-------------PIKSQVAGIAMGLVKKDEHYT 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    S+      L  A+     ++ 
Sbjct: 481 ILTDIQGMEDHLGDMDFKVAGTAEG-ITALQMDIKIDGLSEQILKESLEQARVGRLQILD 539

Query: 233 LQKDVISNE 241
               +I+  
Sbjct: 540 HMNSIIAEP 548



 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 87/222 (39%), Gaps = 25/222 (11%)

Query: 22  KYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78
           + A  + +VK+GDT +LTTA   ++   V  +     +       G +P   G  ++RE 
Sbjct: 26  RQANAAVVVKYGDTVVLTTAVASKEAKDVDFFPLTVNYEEKMYAVGKIP---GGFLRRE- 81

Query: 79  VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138
             GR G  +    R+I R +R + +       Q+I     ++ D     AA+        
Sbjct: 82  --GRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLSVEYDCDPVMAAML------- 132

Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH 198
                     +    +   KG +A ++ G + G  +++    +     VD     T S  
Sbjct: 133 ------GSSLSLSVSNIPFKGPIAGVTVGYVDGEYVINPTVEQMERSTVDLKVAGT-SDA 185

Query: 199 IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           I  V+  A+    S++     +    + I  LI+ Q+ +++ 
Sbjct: 186 INMVEAGAKE--VSEEIMLNAIMFGHEEIKRLIEFQQQIVNE 225


>gi|71276358|ref|ZP_00652635.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
           Dixon]
 gi|71162820|gb|EAO12545.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
           Dixon]
          Length = 700

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 89/247 (36%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR    +R I++   V     GS L   G+T  +   TL       + +   G   
Sbjct: 315 VRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQVIDAVTGEYK 374

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +      R+ G      R+  R + +V+         I +  
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGVQKRREIGHG----RLARRGVLAVMPSLDEFPYTIRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEGERFV 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  AK     ++ 
Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTSEG-VSALQMDIKIEGITEEIMRQALQQAKVGRLHILG 536

Query: 233 LQKDVIS 239
                ++
Sbjct: 537 EMDKALA 543



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 80/227 (35%), Gaps = 31/227 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A G+ +VK  DT LL T     T  E    +     +       G +P 
Sbjct: 15  VTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQEKFYAGGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA--DGGTR 126
             G+  KRE   GR   +   I R+I R +R +         QII     +    DG   
Sbjct: 74  --GSFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEIDGDI- 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                    KG + A   G   G  I++    E     
Sbjct: 128 -PAMIGASAALSLAGI-------------PFKGPIGAAKVGYNDGQYILNPTVSELKKSQ 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           ++     T +  ++     +E A  S++     +      +  +I++
Sbjct: 174 LELVVAGTANAVLMV---ESEAALLSEEVMLGAVIFGHREMQKVIQV 217


>gi|170729437|ref|YP_001774870.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa M12]
 gi|226704835|sp|B0U1R2|PNP_XYLFM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|167964230|gb|ACA11240.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa M12]
          Length = 700

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 89/247 (36%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR    +R I++   V     GS L   G+T  +   TL       + +   G   
Sbjct: 315 VRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQVIDAVTGEYK 374

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +      R+ G      R+  R + +V+         I +  
Sbjct: 375 ENFLFHYNFPPYSVGECGRFGVQKRREIGHG----RLARRGVLAVMPSLDEFPYTIRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEGERFV 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  AK     ++ 
Sbjct: 478 VLSDILGDEDHLGDMDFKVAGTSEG-VSALQMDIKIEGITEEIMRQALQQAKVGRLHILG 536

Query: 233 LQKDVIS 239
                ++
Sbjct: 537 EMDKALA 543



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 80/227 (35%), Gaps = 31/227 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A G+ +VK  DT LL T     T  E    +     +       G +P 
Sbjct: 15  VTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQEKFYAGGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA--DGGTR 126
             G+  KRE   GR   +   I R+I R +R +         QII     +    DG   
Sbjct: 74  --GSFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEIDGDI- 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA  AL                    KG + A   G   G  I++    E     
Sbjct: 128 -PAMIGASAALSLAGI-------------PFKGPIGAAKVGYNDGQYILNPTVSELKKSQ 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           ++     T +  ++     +E A  S++     +      +  +I++
Sbjct: 174 LELVVAGTANAVLMV---ESEAALLSEEVMLGAVIFGHREMQKVIQV 217


>gi|15892586|ref|NP_360300.1| polynucleotide phosphorylase/polyadenylase [Rickettsia conorii str.
           Malish 7]
 gi|81528220|sp|Q92HV7|PNP_RICCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|15619751|gb|AAL03201.1| polyribonucleotide nucleotidyltransferase [Rickettsia conorii str.
           Malish 7]
          Length = 749

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 90/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R+I+    +   A GS L   G+T  L + T    +   I ++  G    
Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S    +  +A S R+ G      ++  RA+  ++         I +  +
Sbjct: 376 RFMLNYIFPPYSVNEAMPMKAPSRREVGHG----KLAWRAINPILPNKVQFPYSIRVVAE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
             +++G +  A + G+ +AL                   +K  VA I+ G++        
Sbjct: 432 TTESNGSSSMATVCGSSLALMYAGV-------------PIKAPVAGIAMGLVKEGKNFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   + +          L  A+     +++ 
Sbjct: 479 LSDILGDEDYFGDMDFKVAGTSEG-ITALQMDIKISGVDFKIMKVALEQARLGRLHILEQ 537

Query: 234 QKDVISNE 241
              VIS  
Sbjct: 538 MNKVISKP 545



 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 86/229 (37%), Gaps = 33/229 (14%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST----GNRVK 75
           +++ A+G+  VK G++ LL TA +  K            +T  Y  +  +     G   K
Sbjct: 23  IARQADGAVTVKMGNSVLLCTAVVANKA---KEGIGFLPLTINYREMAYAAGKIPGGFFK 79

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--RTAAITGA 133
            E   G+   R   + R+I R +R +   + +      + C V+  D  T     AI GA
Sbjct: 80  HE---GKASDREVLVSRLIDRPIRPLFHPAFVNET--HVTCSVLSYDPETPVDILAIIGA 134

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
             AL                       VAA   G++ G  +++       T  +D     
Sbjct: 135 SAALS-------------LSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVAG 181

Query: 194 T-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           T DS  +VE    +E    S++     +    +    +IK+ K+ ++ E
Sbjct: 182 TSDSVMMVE----SEAHLLSEEQMLEAVKFGFESFQPVIKIIKE-LAEE 225


>gi|297180954|gb|ADI17157.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [uncultured gamma proteobacterium
           HF0070_08D07]
          Length = 695

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 90/243 (37%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R I +   V     GS L   G+T  L  ATL    +  +   +  T   
Sbjct: 314 RIDGRDLKTVRAIEVEVGVLPKTHGSALFTRGETQALVVATLGTLRDAAIIDALEGTYKD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G          R+ G      ++  R + +V+         + +  +
Sbjct: 374 QFMLHYNFPPYSVGETGMMGGPKRREVGHG----KLARRGVSAVLPDPDEFPYTLRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ G  +AL D    +        +  V +G+  A+         + D+
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGVPLAAPVAGVAMGLVKEGNRYAV---------LTDI 480

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     +  G +  +Q   + +  +++     L+ A +    +++    V
Sbjct: 481 LGDEDHLGDMDFKVAGSSKG-VTALQMDIKISGITEEIMEVALSQAYEARLHILEQMNKV 539

Query: 238 ISN 240
           IS 
Sbjct: 540 ISQ 542



 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 78/229 (34%), Gaps = 27/229 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           E+ +    ++K   G+ LV  G T ++TT             +     +       G +P
Sbjct: 14  EVVIETNKIAKQTSGTALVSIGGTVVMTTVVGAKSARPGQDFFPLTVNYQEKAYAAGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   +RE   GR   +     R+I R +R +   S +   Q++        D     
Sbjct: 74  ---GGFFRRE---GRPSEKETLTSRLIDRPIRPLFPKSFMNEVQVVCTVLSTDKDQDPDI 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G   AL                    +G + A   G   G  +++  Y  ++  D 
Sbjct: 128 AAMIGTSAALA-------------ISGLPFEGPIGAARVGYKDGAYLLNPGY--EALKDG 172

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D N ++  +   V +  S E    S+D     +      +  +I   K+
Sbjct: 173 DLNMMVAGTEEAVLMVES-EAKELSEDQMLGAVLYGHQEMQVVISSIKE 220


>gi|227499294|ref|ZP_03929406.1| polynucleotide phosphorylase/polyadenylase [Anaerococcus tetradius
           ATCC 35098]
 gi|227218645|gb|EEI83879.1| polynucleotide phosphorylase/polyadenylase [Anaerococcus tetradius
           ATCC 35098]
          Length = 712

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 91/250 (36%), Gaps = 27/250 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTK 55
           +R  GR   ++R +S    +     GS L + G T +L+  TL     + I     R   
Sbjct: 311 IRPDGRDLTEIRPLSAEAGLLPRVHGSGLFQRGQTQVLSVVTLGSPADVQIIDGLNREEI 370

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                 +Y   P   G+         R+ G      R+  RAL  V+         I + 
Sbjct: 371 QKRYIHQYNFPPFCVGDIRPLRGPGRREIGHG----RLAERALIPVLPDEKDFPYTIRVV 426

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            +V+ ++G +  A+I G+ ++L D                 ++  VA I+ G++      
Sbjct: 427 SEVLSSNGSSSQASICGSTLSLMDAGV-------------PIRKPVAGIAMGLIKEDSSI 473

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I  +Q   +    +++     LN A      ++
Sbjct: 474 SILTDIQGLEDHLGDMDFKVAGTRDG-ITALQMDMKIDGITREVLEESLNDAHSARMRIL 532

Query: 232 KLQKDVISNE 241
            + +  I   
Sbjct: 533 DVIEAAIDKP 542



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 75/223 (33%), Gaps = 27/223 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
           +  +T    ++   G C ++ GDT LL TA       E +  +             G +P
Sbjct: 14  DFEITIGKFAEQTNGECYIRCGDTSLLVTAVASEKPREGIDFFPLICDFQEKLYAVGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   G+    +  I R + R LR +   +     QII     +  D     
Sbjct: 74  ---GGFLKRE---GKASDEATLISRQMDRPLRPLFPENYYNDVQIIATVLSMDEDNLPDP 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
               GA +AL                     G V A   G + G  I++    E     +
Sbjct: 128 LTTIGASIAL-------------GISDIPFYGPVGACMVGKVDGKLIINPSKEEREKSTL 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           +        G I  V+  A     S++     + LA + I ++
Sbjct: 175 ELTVA-GKKGAINMVEAGA--CELSEEEMLEAMLLALEEIGNI 214


>gi|66529825|ref|XP_624000.1| PREDICTED: exosome complex exonuclease RRP43-like [Apis mellifera]
          Length = 281

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 85/238 (35%), Gaps = 26/238 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GRQ    R IS+      +A+ S + K G+T ++     E  VP    + + G+I 
Sbjct: 22  VRPDGRQFLSFRPISVNISSITHADSSAIFKIGNTTIVCGIKSELAVPK-AESPECGYIV 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIII 114
               + P  +          G    ++Q I +++   LR  + +DL  L    G    ++
Sbjct: 81  PNIELPPLCSPKFR-----PGPPSDQAQVITKLVENILRNSAAIDLKELCVYKGKLVWVL 135

Query: 115 DCDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAA 163
            CD+  I  DG    A I      L+                  ++  ++   +K    +
Sbjct: 136 YCDLVCINYDGSIIDACIGALTATLNTLTLPEIFYNVETGHVSINSTKRIRFPIKALPVS 195

Query: 164 ISCGMLCGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           I+  +     ++ D    E+S        VM +   I  +         SQD F   L
Sbjct: 196 ITFAIFDNQLLIADPTDDEESLCLGKLTIVMNEE-KICCIHKPG-GIPISQDIFLKSL 251


>gi|34580431|ref|ZP_00141911.1| polyribonucleotide nucleotidyltransferase [Rickettsia sibirica 246]
 gi|28261816|gb|EAA25320.1| polyribonucleotide nucleotidyltransferase [Rickettsia sibirica 246]
          Length = 748

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 91/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R+I+    +   A GS L   G+T  L + T    +   I ++  G    
Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S    +  +A S R+ G      ++  RA+  ++   A     I +  +
Sbjct: 376 RFMLNYIFPPYSVNEAMPMKAPSRREVGHG----KLAWRAINPILPNKAQFPYSIRVVAE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
             +++G +  A + G+ +AL                   +K  VA I+ G++        
Sbjct: 432 TTESNGSSSMATVCGSSLALMYAGV-------------PIKAPVAGIAMGLVKEGKNFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   + +          L  A+     +++ 
Sbjct: 479 LSDILGDEDYFGDMDFKVAGTSEG-MTALQMDIKISGVDFKIMKVALEQARLGRLHILEQ 537

Query: 234 QKDVISNE 241
              VIS  
Sbjct: 538 MNKVISKP 545



 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 86/229 (37%), Gaps = 33/229 (14%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST----GNRVK 75
           +++ A+G+  VK G++ LL TA +  K            +T  Y  +  +     G   K
Sbjct: 23  IARQADGAVTVKMGNSVLLCTAVVANKA---KEGIGFLPLTINYREMAYAAGKIPGGFFK 79

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--RTAAITGA 133
            E   G+   R   + R+I R +R +   + +      + C V+  D  T     AI GA
Sbjct: 80  HE---GKASDREVVVSRLIDRPIRPLFHPAFVNET--HVTCSVLSYDPETPVDILAIIGA 134

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
             AL                       VAA   G++ G  +++       T  +D     
Sbjct: 135 SAALS-------------LSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVAG 181

Query: 194 T-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           T DS  +VE    +E    S++     +    +    +IK+ K+ ++ E
Sbjct: 182 TSDSVMMVE----SEAHLLSEEQMLEAVKFGFESFQPVIKIIKE-LAEE 225


>gi|212696535|ref|ZP_03304663.1| hypothetical protein ANHYDRO_01073 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676471|gb|EEB36078.1| hypothetical protein ANHYDRO_01073 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 702

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 97/251 (38%), Gaps = 29/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTK- 55
           +R  GR+  ++R +S    +   A GS L + G T +L+  T     EE+V   +   + 
Sbjct: 311 IRPDGRKMKEIRPLSAEAGLLPRAHGSGLFQRGQTQVLSVLTLGSPGEEQVIDSMNREEI 370

Query: 56  -HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              +I  +Y   P   G+         R+ G       +  RAL  V+  +      I +
Sbjct: 371 TKRYIH-QYNFPPFCVGDIRPLRGPGRREVGHGH----LAERALIPVLPDTKDFPYTIRV 425

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-- 172
             +V+ ++G +  A+I G+ ++L D                 +K  VA I+ G++     
Sbjct: 426 VSEVLSSNGSSSQASICGSTLSLMDAGV-------------PIKKPVAGIAMGLIKEEDS 472

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G I  +Q   + +  +++     L  A +    +
Sbjct: 473 ISILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDMKISGINKEVLQEALADAHEARLKI 531

Query: 231 IKLQKDVISNE 241
           + +    I   
Sbjct: 532 LDVITSAIDKP 542



 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 84/223 (37%), Gaps = 27/223 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
           ++S+T   V++   G CL++ GDT LL TA       E +  +     +       G +P
Sbjct: 14  DLSITIGKVAEQTNGECLIRSGDTILLVTAVASDKPREGIDFFPLICDYQEKLYAVGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   G+   ++  I R + R LR +   +     Q+I     +  D     
Sbjct: 74  ---GGFIKRE---GKASDKAILISRQMDRPLRPLFPENFYNDVQVIATPFSVDEDNEPDC 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
               GA +AL                     G VAA+S G + G  IV+ +  +     +
Sbjct: 128 MTTIGASIAL-------------GISDIPFYGPVAAVSVGYVDGKFIVNPNKDQREKSSL 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           D     T    I  V+  A     S+D     + +A   I ++
Sbjct: 175 DLTVAGTADA-INMVEAGANE--LSEDEMLEAMMVAHAEIKEI 214


>gi|229586754|ref|YP_002845255.1| polynucleotide phosphorylase/polyadenylase [Rickettsia africae
           ESF-5]
 gi|259534150|sp|C3PNK2|PNP_RICAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|228021804|gb|ACP53512.1| Polyribonucleotide nucleotidyltransferase [Rickettsia africae
           ESF-5]
          Length = 748

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 90/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R+I+    +   A GS L   G+T  L + T    +   I ++  G    
Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S    +  +A S R+ G      ++  RA+  ++         I +  +
Sbjct: 376 RFMLNYIFPPYSVNEAMPMKAPSRREVGHG----KLAWRAINPILPNKVQFPYSIRVVAE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
             +++G +  A + G+ +AL                   +K  VA I+ G++        
Sbjct: 432 TTESNGSSSMATVCGSSLALMYAGV-------------PIKAPVAGIAMGLVKEGKNFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   + +          L  A+     +++ 
Sbjct: 479 LSDILGDEDYFGDMDFKVAGTSEG-ITALQMDIKISGVDFKIMKVALEQARLGRLHILEQ 537

Query: 234 QKDVISNE 241
              VIS  
Sbjct: 538 MNKVISKP 545



 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 86/229 (37%), Gaps = 33/229 (14%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST----GNRVK 75
           +++ A+G+  VK G++ LL TA +  K            +T  Y  +  +     G   K
Sbjct: 23  IARQADGAVTVKMGNSVLLCTAVVANKA---KEGIGFLPLTINYREMAYAAGKIPGGFFK 79

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--RTAAITGA 133
            E   G+   R   + R+I R +R +   + +      + C V+  D  T     AI GA
Sbjct: 80  HE---GKASDREVLVSRLIDRPIRPLFHPAFVNET--HVTCSVLSYDPETPVDILAIIGA 134

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
             AL                       VAA   G++ G  +++       T  +D     
Sbjct: 135 SAALS-------------LSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVAG 181

Query: 194 T-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           T DS  +VE    +E    S++     +    +    +IK+ K+ ++ E
Sbjct: 182 TSDSVMMVE----SEAHLLSEEQMLEAVKFGFESFQPVIKIIKE-LAEE 225


>gi|332359275|gb|EGJ37096.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK49]
          Length = 733

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ N++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVNEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           L +  I
Sbjct: 539 LIEATI 544



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           R++ +    V+K A GS +V++G++ +LT AT+ +K      +     +       G  P
Sbjct: 13  RDLVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R +         Q+I        D   + 
Sbjct: 73  ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S+D     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKEA-INMVESGAKE--LSEDVMLEALLKGHEAVKELIAFQEEIVA 222


>gi|325849667|ref|ZP_08170870.1| polyribonucleotide nucleotidyltransferase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480008|gb|EGC83086.1| polyribonucleotide nucleotidyltransferase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 702

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 97/251 (38%), Gaps = 29/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTK- 55
           +R  GR+  ++R +S    +   A GS L + G T +L+  T     EE+V   +   + 
Sbjct: 311 IRPDGRKMKEIRPLSAEAGLLPRAHGSGLFQRGQTQVLSVLTLGSPGEEQVIDSMNREEI 370

Query: 56  -HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              +I  +Y   P   G+         R+ G       +  RAL  V+  +      I +
Sbjct: 371 TKRYIH-QYNFPPFCVGDIRPLRGPGRREVGHGH----LAERALIPVLPDTKDFPYTIRV 425

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-- 172
             +V+ ++G +  A+I G+ ++L D                 +K  VA I+ G++     
Sbjct: 426 VSEVLSSNGSSSQASICGSTLSLMDAGV-------------PIKKPVAGIAMGLIKEEDS 472

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G I  +Q   + +  +++     L  A +    +
Sbjct: 473 ISILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDMKISGINKEVLQEALADAHEARLKI 531

Query: 231 IKLQKDVISNE 241
           + +    I   
Sbjct: 532 LDVITSAIDKP 542



 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 84/223 (37%), Gaps = 27/223 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
           ++S+T   V++   G CL++ GDT LL TA       E +  +     +       G +P
Sbjct: 14  DLSITIGKVAEQTNGECLIRSGDTILLVTAVASDKPREGIDFFPLICDYQEKLYAVGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   G+   ++  I R + R LR +   +     Q+I     +  D     
Sbjct: 74  ---GGFIKRE---GKASDKAILISRQMDRPLRPLFPENFYNDVQVIATPFSVDEDNEPDC 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
               GA +AL                     G VAA+S G + G  IV+ +  +     +
Sbjct: 128 MTTIGASIAL-------------GISDIPFYGPVAAVSVGYVDGKFIVNPNKDQREKSSL 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           D     T    I  V+  A     S+D     + +A   I ++
Sbjct: 175 DLTVAGTADA-INMVEAGANE--LSEDEMLEAMMVAHAEIKEI 214


>gi|300087646|ref|YP_003758168.1| polyribonucleotide nucleotidyltransferase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527379|gb|ADJ25847.1| polyribonucleotide nucleotidyltransferase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 733

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 57/251 (22%), Positives = 94/251 (37%), Gaps = 32/251 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTKH 56
           R+SGR   ++RE+S    V     GS L   G T +L   TL     E+K+      T  
Sbjct: 313 RVSGRGIEEIRELSAEVGVLPRVHGSALFSRGQTQILNVVTLGSLQMEQKLDNISPETSK 372

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            +I   Y   P S G   KR     R+ G       +  RAL  VV   A     + +  
Sbjct: 373 RYIH-HYNFPPYSVGE-TKRIGTGRREIGHG----ALAERALLPVVPSEAEFPYALRLVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171
           + + ++G T  A+   + ++L D                 +K  VA IS G++       
Sbjct: 427 EAVSSNGSTSMASACASSLSLMDAGV-------------PIKKPVAGISIGLITDDTNPD 473

Query: 172 --YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D++  ED+  D+D     T  G I  +Q   +    +       L  A+     
Sbjct: 474 RFVTLTDIEGLEDNYGDMDFKVAGTRDG-ITAIQLDMKLKGITFAVIEQTLAQARRAREV 532

Query: 230 LIKLQKDVISN 240
           ++++    I+ 
Sbjct: 533 ILEVMNKAIAQ 543



 Score = 85.1 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 86/231 (37%), Gaps = 23/231 (9%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM--LPR 68
           R + +        A G+  V++GDT +L TA +  K P    +     I  E  M    R
Sbjct: 14  RNLVIENGRMAGQANGAVTVRYGDTVVLVTAVI-AKEPRPGVDFLPLTIDVEERMYAAGR 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  ++RE   GR   ++    R+  R LR ++  S     QII+       +      
Sbjct: 73  IPGGFIRRE---GRPSEQATLAARLADRPLRPLLPKSWRREIQIIVTVLTADQENDPDVL 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            + GA  AL                     G ++A+  G + G  +++  + +     +D
Sbjct: 130 GVIGASCAL-------------GISEMPFDGPLSAVRVGHIDGEFVINPTHSQLENSTLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                T S  +  ++  A  A   +D  F  +        ++I +Q ++I+
Sbjct: 177 VVVASTRSA-VTMLEAGANEAP--EDLMFEAIRFGHQANQEIIAIQDEIIA 224


>gi|198274276|ref|ZP_03206808.1| hypothetical protein BACPLE_00417 [Bacteroides plebeius DSM 17135]
 gi|198272951|gb|EDY97220.1| hypothetical protein BACPLE_00417 [Bacteroides plebeius DSM 17135]
          Length = 727

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 87/250 (34%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57
           RL GR   ++R I           GS +   G+T  L+T TL  K+   I     +    
Sbjct: 319 RLDGRATTEIRPIWCETSPLPGPHGSSIFTRGETQSLSTVTLGTKMDEKIVDDVLDQHKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +         + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPAD--YPYCVRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGV-------------PIKKPVSGIAMGLIKNAGEDKY 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    + D     L  AK     ++
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTRDG-ITATQMDIKCDGLTYDILEKALMQAKQGREYIL 538

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 539 GKLTECIAEP 548



 Score = 85.9 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 86/231 (37%), Gaps = 21/231 (9%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWITAEYGMLPRS 69
           R I+L      K A+G+ +++ G+T LL T    ++ VP             +Y    R 
Sbjct: 15  RTITLETGKLAKQADGAVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYREKYSAFGRF 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   KRE   G+         R++ RALR +   +     ++ ++  +  ADG      
Sbjct: 75  PGGFTKRE---GKASDYEILTCRLVDRALRPLFPDN--YHAEVYVNIILYSADG------ 123

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
                V + D L  +   +          G ++ +    + G  +++  +      D+D 
Sbjct: 124 -----VDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEALERADMDI 178

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
               T   +I+ V+G  E    S+      +  A + I    K Q +++  
Sbjct: 179 MVAATYE-NIMMVEG--EMKEVSEQDLLEAMKFAHEAIKVHCKAQMELMEE 226


>gi|238650252|ref|YP_002916103.1| polynucleotide phosphorylase/polyadenylase [Rickettsia peacockii
           str. Rustic]
 gi|259534152|sp|C4K0F4|PNP_RICPU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|238624350|gb|ACR47056.1| polynucleotide phosphorylase/polyadenylase [Rickettsia peacockii
           str. Rustic]
          Length = 748

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 90/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R+I+    +   A GS L   G+T  L + T    +   I ++  G    
Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S    +  +A S R+ G      ++  RA+  ++         I +  +
Sbjct: 376 RFMLNYIFPPYSVNEAMPMKAPSRREVGHG----KLAWRAINPILPNKVQFPYSIRVVAE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
             +++G +  A + G+ +AL                   +K  VA I+ G++        
Sbjct: 432 TTESNGSSSMATVCGSSLALMYAGV-------------PIKAPVAGIAMGLVKEGKNFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   + +          L  A+     +++ 
Sbjct: 479 LSDILGDEDYFGDMDFKVAGTSEG-ITALQMDIKISGVDFKIMKVALEQARLGRLHILEQ 537

Query: 234 QKDVISNE 241
              VIS  
Sbjct: 538 MNKVISKP 545



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 87/228 (38%), Gaps = 31/228 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST----GNRVK 75
           +++ A+G+  VK G++ LL TA +  K            +T  Y  +  +     G   K
Sbjct: 23  IARQADGAVTVKMGNSVLLCTAVVANKA---KEGIGLLPLTINYREMAYAAGKIPGGFFK 79

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--RTAAITGA 133
            E   G+   R   + R+I R +R +   + +      + C V+  D  T     AI GA
Sbjct: 80  HE---GKASDREVLVSRLIDRPIRPLFHPAFVNET--HVTCSVLSYDPETPVDILAIIGA 134

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
             AL                       VAA   G++ G  +++       T  +D     
Sbjct: 135 SAALS-------------LSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVAG 181

Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           T SG ++ V+  +E    S++     +    +    +IK+ K+ ++ E
Sbjct: 182 T-SGSVMMVE--SEAHLLSEEQMLEAVKFGFESFQPVIKIIKE-LAEE 225


>gi|166030867|ref|ZP_02233696.1| hypothetical protein DORFOR_00547 [Dorea formicigenerans ATCC
           27755]
 gi|166029134|gb|EDR47891.1| hypothetical protein DORFOR_00547 [Dorea formicigenerans ATCC
           27755]
          Length = 707

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 90/250 (36%), Gaps = 28/250 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHL--LTTATLEEKVPMWIRNTKHGWI 59
           R  GRQ +Q+R ++    +     GS +   G T +  + T     +    +        
Sbjct: 324 RPDGRQIDQIRPLAAEVDLIPRVHGSAMFTRGQTQICDICTLAPLSEAQR-LDGLDEAET 382

Query: 60  TAEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           T  Y M   +  +    E    R  G R      +  RAL  V+   A     I    + 
Sbjct: 383 TKRY-MHHYNFPSYSVGETRPSRGPGRREIGHGALAERALVPVLPSEADFPYAIRTVSET 441

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY------ 172
            +++G T  A++  + +AL                   +K  VA ISCG++ G       
Sbjct: 442 FESNGSTSQASVCASSMALMAAGV-------------PIKSAVAGISCGLVTGDTDDDYL 488

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      +  AK R A L  
Sbjct: 489 VLTDIQGLEDFFGDMDFKVAGTHEG-ITAIQMDIKIHGLTRAIIEEAI--AKTRKARLY- 544

Query: 233 LQKDVISNEV 242
           +  +V+S  +
Sbjct: 545 IMDEVMSKAI 554



 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 80/226 (35%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    V+K A G+ L+ +GDT +L TAT      E +  +  + ++       G +
Sbjct: 24  RTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASEKPREGIDFFPLSVEYNERMYAVGKI 83

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 84  P---GGFNKRE---GKASENAVLTDRVIDRPMRPLFPKDYRNDVTLENLVLSVDQDCSPE 137

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA +A                      G ++    G++ G  +++    + +  D
Sbjct: 138 LTAMLGAAIA-------------TTISDIPFDGPISTTQVGLVDGEFVINPTAEQKAVSD 184

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +      +  A +   ++IK
Sbjct: 185 LALTVASTRE-KVIMIEAGANEVP--EQQMIDAIFKAHEVNQEVIK 227


>gi|62858563|ref|NP_001017016.1| exosome complex component MTR3 [Xenopus (Silurana) tropicalis]
 gi|123892820|sp|Q28F19|EXOS6_XENTR RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
           component 6; AltName: Full=mRNA transport regulator 3
           homolog
 gi|89269970|emb|CAJ81566.1| exosome component 6 [Xenopus (Silurana) tropicalis]
 gi|134024282|gb|AAI36081.1| rarg protein [Xenopus (Silurana) tropicalis]
          Length = 270

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 81/235 (34%), Gaps = 29/235 (12%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFG--DTHLLTTATLE-EKVPMWIRNTKHGWITA 61
           GR  ++ R + +   +   A+GS  ++ G   T +L       E+     R    G +  
Sbjct: 34  GRGPSEPRPVFVRAGLLSQAKGSAYLEAGSGGTKVLCAVHGPRERGMGGERAETRGRLLC 93

Query: 62  EYGMLPRSTGNRVKREAVSG----RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
           +    P S     +R   SG        R   +Q  +  +L   V L      ++I+   
Sbjct: 94  DLRWAPFS-----RRGPWSGSCPAGPSPRQAGLQ--LQESLEPAVRLDRYPRAEVIVWVL 146

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V++  G    AA++ A +AL D    M D +    LS+               G  ++D 
Sbjct: 147 VLEDRGSALPAAVSCASLALADAGIEMFDLALGCGLSRGP------------GGELLLDP 194

Query: 178 DYGEDSTI-DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           D  E+        +  +  +  + +V G      +  +     + L  +    L 
Sbjct: 195 DDDEEEAGSGGTMSLSLLPT--LNQVSGLISSGEWEGESSEEAVRLCMEGCQRLY 247


>gi|227503420|ref|ZP_03933469.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           accolens ATCC 49725]
 gi|227075923|gb|EEI13886.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           accolens ATCC 49725]
          Length = 748

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 95/253 (37%), Gaps = 30/253 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
            R+ GR    +R++S+   +   A GS L + G+T +L   TL+    E+    +   + 
Sbjct: 364 FRIDGRGLTDIRDLSVEVDLVPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPIES 423

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 424 KRYMHHYNFPPFSTGETGRVGSPKRREIGHG----ALAERALLPVIPSREDFPYAIRQVS 479

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
           + + ++G T   ++  + ++L++                 LK  VA I+ G++ G     
Sbjct: 480 EALGSNGSTSMGSVCASTLSLYNAGV-------------PLKAPVAGIAMGLVSGEVKGK 526

Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T    I  +Q   +            L  A+D  A
Sbjct: 527 EKFVALTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPSKVLAQALEQARDARA 585

Query: 229 DLIKLQKDVISNE 241
            +++   +VI + 
Sbjct: 586 TILETMAEVIDSP 598



 Score = 51.6 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 70/246 (28%), Gaps = 36/246 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R +      +++ A+GS      D T LL T T      E    +             G 
Sbjct: 32  RTVRFETGQLARQADGSVTTYLDDDTMLLATTTASNQPRENFDFFPLTVDVEERMYAAGK 91

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q++I       +   
Sbjct: 92  IP---GSFFRRE---GRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSQDPEEYY 145

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI GA  A       +       +++ +              G  +   ++ +    
Sbjct: 146 DVVAINGASAATQLSGLPVSGAVGGVRMALIADDK-------HPEGQWVAFPNHEQHERA 198

Query: 186 DVDANF----VMTDSGHIVEVQGS------------AERATFSQD-HFFAMLNLAKDRIA 228
             +       V       V +               A+ A   Q+      L  AK  I 
Sbjct: 199 LFEMVVAGRIVTKGRKEDVAIMMVEAGAGTNVAERIADGAPAPQEAAVAEGLEAAKPFIK 258

Query: 229 DLIKLQ 234
            L + Q
Sbjct: 259 TLCEAQ 264


>gi|258591357|emb|CBE67656.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [NC10 bacterium 'Dutch
           sediment']
          Length = 695

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 81/226 (35%), Gaps = 27/226 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
            +S+    V++ A+G+ LV++GDT +L T      + + +  +     +       G +P
Sbjct: 13  PLSIEAGRVARQADGAVLVRYGDTVVLVTVVASKQMRQGIDFFPLTVDYQERAYAAGKIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   G+   +     R+I R LR +         QII              
Sbjct: 73  ---GGFFKRE---GKPHDKETLTSRLIDRPLRPLFPDGYRNDVQIIATVLSADQQNDPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA  AL                     G + A+  G + G  +++  Y +    D+
Sbjct: 127 LAVLGASAALTIA-------------PIPFLGPIGAVRVGRVEGKLLLNPTYAQMEGSDI 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           D     T S  +V ++  A      +D  F  +      I  +I +
Sbjct: 174 DMVVAGTRSA-VVMLEAGANEIP--EDVMFEAIEFGHKGIQPMIDM 216



 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 81/245 (33%), Gaps = 20/245 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R  GR    +R I+    V     GS L   G T  L T TL           +      
Sbjct: 312 RADGRSLEDVRPITAEVGVLPRTHGSALFTRGQTQALVTTTLGTSEDEQRLDDLEGEGTK 371

Query: 58  WITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                Y   P S G  R  R       G R      +  RAL + +      S  + I  
Sbjct: 372 RFMLHYNFPPFSVGEVRFMRG-----PGRREIGHGALAERALLAALPPKEEFSYTLRIVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           D+++++G +  A + GA ++L D    +        +  V++   AAI         + D
Sbjct: 427 DILESNGSSSMATVCGASLSLMDAGVPIRSAVAGVAMGLVVEDERAAI---------LTD 477

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     T  G I  +Q   +    +       L  A+     ++     
Sbjct: 478 IIGLEDHLGDMDFKVAGTRKG-ITALQLDIKTQGIAPSLMPKALGQARRARLHILDQMDR 536

Query: 237 VISNE 241
            ++  
Sbjct: 537 ALTEP 541


>gi|260591852|ref|ZP_05857310.1| polyribonucleotide nucleotidyltransferase [Prevotella veroralis
           F0319]
 gi|260536136|gb|EEX18753.1| polyribonucleotide nucleotidyltransferase [Prevotella veroralis
           F0319]
          Length = 751

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 89/250 (35%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57
           R+ GR  +++R I           GS + + G+T  L+T TL  K+   +     +  + 
Sbjct: 325 RMDGRATDEIRPIWCEVDTLPMPHGSAIFQRGETMSLSTCTLGTKMDEKMVDNVLDKSYQ 384

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P  TG    +  V  R+ G       +  RAL+  +         + +   
Sbjct: 385 RFLLHYNFPPFCTGEAKAQRGVGRREIGHGH----LAWRALKGQIPADF--PYTVRLVSQ 438

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D    M             K  V+ I+ G++        
Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVSGIAMGLIKNPGEDKY 485

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G +   Q   +    S +     L  AK     ++
Sbjct: 486 AVLSDILGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHIL 544

Query: 232 KLQKDVISNE 241
            L  + I+  
Sbjct: 545 NLLTETIAEP 554



 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 85/236 (36%), Gaps = 27/236 (11%)

Query: 3   LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       IS+    V+K A+G+ +++ G+T LL T    +E VP            
Sbjct: 11  PDGRT------ISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYR 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y    R  G   KRE   G+         R++ R LR +          + +   ++ 
Sbjct: 65  EQYAAAGRYPGGFTKRE---GKANDDEILTSRLVDRVLRPLFPSDYHCE--VYVQVMLLS 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           +   D L      +        +    + +    + G  +++  + 
Sbjct: 120 ADG-----------IDQPDALAGFAASAALAASDIPIDYPTSEVRVARVNGEYVINPTFE 168

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +    D+D     T   +I+ V+G  E    S+      L  A + I  + ++Q++
Sbjct: 169 QMKHADMDLMVGATKD-NIMMVEG--EMDEVSEQDLIGALKAAHEAIKPMCEMQEE 221


>gi|218282268|ref|ZP_03488567.1| hypothetical protein EUBIFOR_01149 [Eubacterium biforme DSM 3989]
 gi|218216736|gb|EEC90274.1| hypothetical protein EUBIFOR_01149 [Eubacterium biforme DSM 3989]
          Length = 713

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 87/242 (35%), Gaps = 28/242 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56
           +R  GRQ +++R ++    +     GS L   G+T +L+T TL       I +       
Sbjct: 319 VRPDGRQIDEIRPLNSQVDLLPRVHGSALFTRGETQVLSTTTLGALNDNQIIDDLTVVDS 378

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P   G   +     G  G R      +  RAL  V+         I    
Sbjct: 379 KRFMHHYNFPPYCVGETGR----MGNPGRREIGHGALGERALAQVLPSVDEFPYTIRTVA 434

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171
           DV++++G +  A+I    ++L                   +K  VA I+ G++       
Sbjct: 435 DVMESNGSSSQASICAGTMSLMAAGV-------------PIKAPVAGIAMGLIMDDDSGK 481

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T +G I  +Q   +    +++ F   L  A     ++
Sbjct: 482 YTVLTDIQGMEDHFGDMDFKVAGTKNG-ITALQMDIKVTGITKNIFEEALAQAHKARLEI 540

Query: 231 IK 232
           + 
Sbjct: 541 LD 542



 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 91/234 (38%), Gaps = 29/234 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R I++    ++K A+G+ ++++GDT  L+TA      +E +  +             G +
Sbjct: 13  RGITVETGEIAKQADGAVIIRYGDTVTLSTACASNQAKEGIDFFPLTVSFEEKLYSVGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  ++RE   GR    +    RMI R +R +         Q++     +  D    
Sbjct: 73  P---GGFLRRE---GRPSEHATLTARMIDRPIRPLFAEGFRNEVQVVNTVLSVDQDASPE 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA +AL                     G +A    G + G  + +    +    D
Sbjct: 127 MAAMFGASLALC-------------ISDIPFNGPIAGCKVGRINGELVANPTVAQMEESD 173

Query: 187 VDANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +D     T  + ++VE    A     S++   A L    ++I  L   Q+++++
Sbjct: 174 IDLTVAGTAQALNMVE----AGAKEVSEEDMLAALMFGHEQIKKLCAFQEEIVA 223


>gi|326800482|ref|YP_004318301.1| polyribonucleotide nucleotidyltransferase [Sphingobacterium sp. 21]
 gi|326551246|gb|ADZ79631.1| Polyribonucleotide nucleotidyltransferase [Sphingobacterium sp. 21]
          Length = 732

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 81/235 (34%), Gaps = 28/235 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +RL GR    +R I         A GS +   G+T  LT+ TL  K    + +      +
Sbjct: 333 IRLDGRDVRTVRPIWSEVDYLPAAHGSAIFTRGETQSLTSVTLGAKEDEQMIDGAFINGY 392

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     STG          R+ G       +  R+L+ V+         I +  
Sbjct: 393 SRFILHYNFPGFSTGEVRPNRGPGRREVGHG----NLAMRSLKQVLPSQEENPYTIRVVS 448

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           D+++++G +  A +    +AL D                 +   V+ I+ G++       
Sbjct: 449 DILESNGSSSMATVCAGTLALMDAGVK-------------ITAPVSGIAMGLITDEKTGK 495

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
              + D+   ED   D+D     T  G IV  Q   +      +     L  AK+
Sbjct: 496 YAVLSDILGDEDHLGDMDFKVTGTSKG-IVACQMDLKINGLKWEVLKEALYQAKE 549



 Score = 88.2 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 86/227 (37%), Gaps = 21/227 (9%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTT-ATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
           R+I +      K A+GS +VK G+T LL T  + +E  P             +Y    R 
Sbjct: 31  RQIEIETGKLAKQADGSVVVKMGNTMLLATVVSAQEAKPGTDFLPLSVDYQEKYAATGRI 90

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  ++REA   R       I R++ RALR +         Q++I   +I AD       
Sbjct: 91  PGGFLRREA---RLSDYEILISRLVDRALRPLFPDDYHADTQVMIT--LISADKDI---- 141

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
                  + D L  +   +          G ++ +    + G  +++    +     ++ 
Sbjct: 142 -------MPDALAGLAASAALAVSDIPFNGPISEVRVAKIDGKFVINPLLSDLERATLEF 194

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             V   +  IV V+G A+    S++     +  A + I   ++ Q +
Sbjct: 195 -IVAGSANDIVMVEGEAKE--ISEEEMVEAIAFAHEAIKVQVQAQLE 238


>gi|294142055|ref|YP_003558033.1| polyribonucleotide nucleotidyltransferase [Shewanella violacea
           DSS12]
 gi|293328524|dbj|BAJ03255.1| polyribonucleotide nucleotidyltransferase [Shewanella violacea
           DSS12]
          Length = 705

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 91/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+ + +R +++   V     GS +   G+T  L T TL  +      ++  G  T 
Sbjct: 317 RIDGREPDMVRGLNVMAGVLPRTHGSAIFTRGETQALVTCTLGTERDAQKVDSIMGEYTN 376

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R + +V+  +      I +  +
Sbjct: 377 RFMLHYNFPPYCVGETGFVGSPKRREIGHG----KLAWRGMNAVMPSAEDFPYSIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ G  +AL D                 +K  VA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +++     L  A      ++ +
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGITKEIMQIALQQAYGARVHILNV 538

Query: 234 QKDVISNE 241
               I   
Sbjct: 539 MDQAIGTH 546



 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 76/225 (33%), Gaps = 27/225 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L   V  + A+ + L   GDT +L T       E     +     +   T   G +P 
Sbjct: 18  VTLETGVIARQADAAVLASMGDTTVLVTVVGKKYEEPGRDFFPLTVNYQERTYAAGKIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+II    +  +      
Sbjct: 77  --GGFFKRE---GRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDVI 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G +     G + G  I++ +  +    D+D
Sbjct: 132 SMIGTSAALA-------------ISGLPFNGPLGVARVGYINGEYILNPEVSQLVESDLD 178

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
                T +  ++     +E A+  ++     +    +++  +I  
Sbjct: 179 LIVAGTQAAVLMV---ESEAASLPEEIMLGSVAYGHEQLQVVIDA 220


>gi|257460281|ref|ZP_05625384.1| polyribonucleotide nucleotidyltransferase [Campylobacter gracilis
           RM3268]
 gi|257442346|gb|EEV17486.1| polyribonucleotide nucleotidyltransferase [Campylobacter gracilis
           RM3268]
          Length = 704

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 80/223 (35%), Gaps = 22/223 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55
           R  GR  +++R IS+   +   A GSCL   G T  L   TL       + ++       
Sbjct: 323 RADGRALDEVRPISIETNILPCAHGSCLFTRGQTQALVVTTLGGDSDAQLSDSLTQLEPI 382

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y       G     ++   R+ G       +  RAL   ++L++   + I + 
Sbjct: 383 SERFMFNYNFPGFCVGEASPLKSPGRRELGHG----NLAKRALYPSINLNS--PQSIRVV 436

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++++++G +  A++ G  ++L               +  + +G   A+         + 
Sbjct: 437 SEILESNGSSSMASVCGGALSLRAAGVPTLKLVAGVAMGLIFEGEKHAV---------LT 487

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
           D+   ED   D+D     T  G I  +Q   +    S +    
Sbjct: 488 DIMGLEDHDGDMDFKVAGTYEG-ITALQMDIKLGGISLEVLKE 529



 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 81/222 (36%), Gaps = 36/222 (16%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY--GM--LPRSTGNRVK 75
           V+K A G+ L++  +T +L T   EE             +T +Y   M    R  G  +K
Sbjct: 19  VAKQAAGAALLRVKNTVVLATVAREETQ----VQEDFLPLTVQYIEKMYAAGRIPGGYIK 74

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGA 133
           RE    + G       R+I R+LR +         QI++   V+ AD     +  A+  A
Sbjct: 75  RET---KPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVY--VLSADPEVDLQVVALNAA 129

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY------GEDST-ID 186
             AL+                  +K  V  +  G   G  I++           D     
Sbjct: 130 SAALY-------------LSDIPIKAPVCGVRIGYENGNFILNPSNSTLKASVLDLYVAG 176

Query: 187 VDANFVMTDSGHIVEVQGSAER-ATFSQDHFFAMLNLAKDRI 227
           V    +M +   + ++ G A++   FS+D     ++ A   I
Sbjct: 177 VGDELLMIEMRSLPQINGDAQQMNEFSEDLMVDAIDFAAKAI 218


>gi|164688511|ref|ZP_02212539.1| hypothetical protein CLOBAR_02156 [Clostridium bartlettii DSM
           16795]
 gi|164602924|gb|EDQ96389.1| hypothetical protein CLOBAR_02156 [Clostridium bartlettii DSM
           16795]
          Length = 701

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 85/245 (34%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKHG 57
           R   R+ +++R I           GS L   G T ++T     A  + ++   +   +  
Sbjct: 315 RPDARKTDEIRPIWCDCGFIPRTHGSGLFTRGQTQVMTITTLGALGDVQILDGLDEEESK 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  RAL  V+         I +  +
Sbjct: 375 RYMHHYNFPAYSVGEVRPSRGPGRREIGHG----ALAERALLPVIPSKEEFPYAIRLVSE 430

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           V+ ++G T   ++ G+ ++L D                 +K  VA I+ G++        
Sbjct: 431 VLSSNGSTSQGSVCGSTLSLLDAGV-------------PIKDMVAGIAMGLIEQDGKIAI 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   + A   ++     L  A+     ++  
Sbjct: 478 LSDIQGMEDHLGDMDFKVAGTEHG-ITAIQMDIKIAGIDEEILRTALAQARVGRLHILNE 536

Query: 234 QKDVI 238
            +  I
Sbjct: 537 MRKTI 541



 Score = 86.7 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 86/234 (36%), Gaps = 27/234 (11%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           RE+S+        A GS ++K+G+T ++   +      E V  +  +  +       G +
Sbjct: 14  RELSVEIGKIAQLASGSAILKYGETMVMVNVSKSAEPREGVDFFPLSVDYEEKLYSVGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R +R +         Q++     +  D    
Sbjct: 74  P---GGFLKRE---GKASEKATLTSRLIDRPIRPLFPKGFRNDVQVVATVLSVDHDCTPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ VAL                     G   +++ G++ G  +++    +     
Sbjct: 128 VVAMIGSSVALS-------------ISEIPFNGPTGSVNVGLVDGALVINPTAEQREKSS 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    ++ V+  A+    S       +  A + I  ++   +++++ 
Sbjct: 175 LHLTVSGTKDA-VMMVEAGADEVPESL--MLEAILTAHEEIKKIVAFIEEIVAE 225


>gi|187471095|sp|Q0A7A1|PNP_ALHEH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 698

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 87/248 (35%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +         GS +   G+T  +   TL       I +   G    
Sbjct: 317 RIDGRDTRTVRPIDIEVGSLPRTHGSAIFTRGETQAVVVTTLGTGRDAQIIDAIEGERKE 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G          R+ G      ++  R + +V+  +      I +  +
Sbjct: 377 QFMLHYNFPPYCVGETGFMGTPKRREIGHG----KLAKRGIEAVMPAADDCPYVIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A + G  ++L D                 +K  VA I+ G++        
Sbjct: 433 ITESNGSSSMATVCGTSLSLMDAGV-------------PVKAPVAGIAMGLIKEDEQFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+SG +  +Q   +    +++     L  A++    ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTESG-VTALQMDIKIQGITREIMEQALEQAREGRLHILGE 538

Query: 234 QKDVISNE 241
             + IS  
Sbjct: 539 MNNAISGP 546



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 76/227 (33%), Gaps = 33/227 (14%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----N 72
           T  V++ A+G+ LV   DT +L TA   ++            +T  Y     + G     
Sbjct: 19  TGGVARQADGAVLVNMSDTVVLVTAVGRKEADP---GKGFFPLTVNYQERTYAAGKIPGG 75

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
             KRE   GR   +     R+I R +R +         Q++     +  +      A+ G
Sbjct: 76  FFKRE---GRPSEKETLTCRLIDRPIRPLFPEGFYNEVQVVATVLSMNPEVDADIPALIG 132

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
           A  AL                     G + A   G   G  +++  + E +  D+D    
Sbjct: 133 ASAALSISGI-------------PFDGPIGAARVGYKDGEYLLNPTFEETAASDLDLVVA 179

Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232
            T++  ++     +E     ++            + +A   I +L  
Sbjct: 180 GTENAVLMV---ESEANQLPEEAMLGAVLYGHEQMQVAIQAINELTA 223


>gi|311739667|ref|ZP_07713502.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305483|gb|EFQ81551.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 748

 Score = 99.4 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 95/250 (38%), Gaps = 30/250 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
            R+ GR    +R++S+   +   A GS L + G+T +L   TL+    E+    +   + 
Sbjct: 364 FRIDGRGVTDIRDLSVEVDLVPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPVES 423

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 424 KRYMHHYNFPPFSTGETGRVGSPKRREIGHG----ALAERALLPVIPSREDFPYAIRQVS 479

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
           + + ++G T   ++  + ++L++                 LK  VA I+ G++ G     
Sbjct: 480 EALGSNGSTSMGSVCASTLSLYNAGV-------------PLKAPVAGIAMGLVSGEVNGK 526

Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T   +I  +Q   +            L  A+D  +
Sbjct: 527 EKFVALTDILGAEDAFGDMDFKVAGTSE-YITALQLDTKLDGIPSKVLAQALEQARDARS 585

Query: 229 DLIKLQKDVI 238
            +++   +VI
Sbjct: 586 TILETMAEVI 595



 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 74/246 (30%), Gaps = 36/246 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R +      +++ A+GS      D T LL T T      E    +             G 
Sbjct: 32  RTLRFETGQLARQADGSVTTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERMYAAGK 91

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q+++       +   
Sbjct: 92  IP---GSFFRRE---GRPSSEAILACRLIDRPLRPTFVKGLRNEVQVVVTVMSQDPEEYY 145

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI GA  A       +       +++ +              G  +   ++ +    
Sbjct: 146 DVVAINGASAATQLSGLPVSGAVGGVRMALIADDK-------HPEGQWVAFPNHEQHERA 198

Query: 186 DVDANFVMT-------DSGHIVEVQ---GS------AERATFSQD-HFFAMLNLAKDRIA 228
             +             D   I+ V+   G+      A+ A   Q+      L  AK  I 
Sbjct: 199 LFEMVVAGRIVKKGRKDDVAIMMVEAGAGTNVAERIADGAPAPQEATVAEGLEAAKPFIK 258

Query: 229 DLIKLQ 234
            L + Q
Sbjct: 259 TLCEAQ 264


>gi|163752368|ref|ZP_02159563.1| polyribonucleotide nucleotidyltransferase [Shewanella benthica
           KT99]
 gi|161327740|gb|EDP98927.1| polyribonucleotide nucleotidyltransferase [Shewanella benthica
           KT99]
          Length = 702

 Score = 99.4 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 91/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+ + +R +++   V     GS +   G+T  L T TL  +      ++  G  T 
Sbjct: 314 RIDGREPDMVRGLNVMAGVLPRTHGSAIFTRGETQALVTCTLGTERDAQKVDSIMGEYTN 373

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G      +   R+ G      ++  R +++V+  +      I +  +
Sbjct: 374 RFMLHYNFPPYCVGETGFVGSPKRREIGHG----KLAWRGMKAVMPSAEEFPYSIRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A + G  +AL D                 +K  VA I+ G++        
Sbjct: 430 ITESNGSSSMATVCGTSLALMDAGV-------------PIKTSVAGIAMGLVKEGDDFVV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +Q+     L  A      ++ +
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIEGITQEIMQIALQQAYGARVHILNV 535

Query: 234 QKDVISNE 241
               I   
Sbjct: 536 MDQAIGTH 543



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 82/228 (35%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           I+L   V  + A+ + L   GDT +L T       E     +     +   T   G +P 
Sbjct: 15  ITLETGVIARQADAAVLASMGDTTVLVTVVGKKDEEPGRDFFPLTVNYQERTYAAGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         Q+II    +  +      
Sbjct: 74  --GGFFKRE---GRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPEINPDVI 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G +     G + G  I++ +  + +  D+D
Sbjct: 129 SMIGTSAALA-------------ISGLPFNGPLGVARVGYINGEYILNPEVSQLAESDLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T+ G ++ V+  +E A+ +++     +    ++   +I   K+
Sbjct: 176 LIVAGTE-GAVLMVE--SEAASLAEEVMLGSVAYGHEQQQVVITAIKE 220


>gi|51473686|ref|YP_067443.1| polynucleotide phosphorylase/polyadenylase [Rickettsia typhi str.
           Wilmington]
 gi|81390070|sp|Q68WN1|PNP_RICTY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|51459998|gb|AAU03961.1| Polynucleotide phosphorylase [Rickettsia typhi str. Wilmington]
          Length = 745

 Score = 99.4 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 91/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR    +R+I+    +   A GS L   G+T  L + T    +   I ++  G   
Sbjct: 315 IRIDGRSTTDIRQIACEVGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYK 374

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S    +  +A S R+ G      ++  RA+  ++         I +  
Sbjct: 375 ERFMLNYIFPPYSVNEAMPMKAPSRREVGHG----KLAWRAINPILPNKVQFPYSIRVVA 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +  +++G +  A + G+ +AL                   +K  VA I+ G++       
Sbjct: 431 ETTESNGSSSMATVCGSSLALMYAGV-------------PIKAPVAGIAMGLIKEGDKFA 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + +          L  A+     +++
Sbjct: 478 ILSDIIGDEDYFGDMDFKVAGTSKG-ITALQMDIKISGIDFKIIQVALEQARHGRLHILE 536

Query: 233 LQKDVISNE 241
               +IS  
Sbjct: 537 QMNKIISKP 545



 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 89/233 (38%), Gaps = 32/233 (13%)

Query: 12  REI-SLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGM 65
           R++  ++   +++ A+ +  VK G++ LL T  +  KV      +     +  +    G 
Sbjct: 13  RQVLEISTGKIARQADAAVTVKMGNSILLCTCVVANKVKDGIGFFPLTINYREMAYSAGK 72

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G  +KRE   G+   +   + R+I R +R +   + +      I C V+  D  T
Sbjct: 73  IP---GGFLKRE---GKASDKEILVSRLIDRPIRPLFHQAFIHET--HITCSVLSYDPET 124

Query: 126 --RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
                AI GA  AL                       VAA   G++ G  +++       
Sbjct: 125 PVDILAIIGASAALS-------------ISPAPYLEIVAASKVGLINGEFVLNPTLELLK 171

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           T  +D     T    ++ V+  +E    S++     +    +    +IKL K+
Sbjct: 172 TSQLDLVVAGTKD-SVMMVE--SEAHLLSEEKMLEAIKFGFENFQTVIKLIKE 221


>gi|290559254|gb|EFD92594.1| Exoribonuclease, phosphorolytic domain 2 [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 145

 Score = 99.4 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 55/158 (34%), Gaps = 26/158 (16%)

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
             S  +R            R  EI ++I  AL   + L  +    I +   + QAD GTR
Sbjct: 1   TFSVPDR-----AKPGMDRRDIEISQVITNALNRAIILEDMPRAMINVRVYITQADAGTR 55

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST-- 184
            A++T   +A  D    M D              VAA++ G +  +  +DL   E+    
Sbjct: 56  CASLTAGAMACADAGLPMRDL-------------VAAVAAGKIGDHVCLDLSKEEEDFHE 102

Query: 185 --IDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAM 219
                D     +     I+ +Q        S+D    +
Sbjct: 103 GEGATDVPIAFLPSKNEILLLQLDGR---VSRDELKKV 137


>gi|282897293|ref|ZP_06305295.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9]
 gi|281197945|gb|EFA72839.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9]
          Length = 458

 Score = 99.4 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 88/236 (37%), Gaps = 28/236 (11%)

Query: 1   MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNT 54
           +R+ GR+ +++R +S    +  +   GS L   G T +L+  TL            ++  
Sbjct: 62  VRVDGRKLDEVRPVSSQVGLLPRRVHGSGLFNRGLTQVLSACTLGTPGDAQSLSDDLQVD 121

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +       Y   P S G      A   R+ G       +  RA+  V+         I +
Sbjct: 122 QSKRYLHHYNFPPFSVGETKPLRAPGRREIGHG----ALAERAILPVLPTKEQFPYVIRV 177

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V+ ++G T   ++ G+ +AL D                 +   V+  + G++     
Sbjct: 178 VSEVLSSNGSTSMGSVCGSTLALMDAGV-------------PITKPVSGAAMGLIKEGSE 224

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
              + D+   ED   D+D     TD+G I  +Q   + +  S D     L  AKD 
Sbjct: 225 VRVLTDIQGIEDFLGDMDFKVAGTDTG-ITALQMDMKISGLSLDVIKQALEQAKDA 279


>gi|225572738|ref|ZP_03781493.1| hypothetical protein RUMHYD_00927 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039911|gb|EEG50157.1| hypothetical protein RUMHYD_00927 [Blautia hydrogenotrophica DSM
           10507]
          Length = 745

 Score = 99.4 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 73/231 (31%), Gaps = 31/231 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  N++R ++    +     GS +   G T  + T T    +    R         
Sbjct: 359 RPDGRAINEIRPLAAEVDIIPRVHGSAMFTRGQTQ-ICTVTTLAPLSEAQRLDGLDEFET 417

Query: 62  E------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G          R+ G       +  RAL  V+         I   
Sbjct: 418 SKRYMHHYNFPSYSVGETKPSRGPGRREIGHG----ALAERALVPVLPTEEEFPYAIRTV 473

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            +  +++G T  A+I  + ++L                   ++  VA IS G++ G    
Sbjct: 474 SETFESNGSTSQASICASTMSLMAAGV-------------PIRKPVAGISAGLVTGETDD 520

Query: 173 ---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
               + D+   ED   D+D     T  G I  +Q   +    ++      +
Sbjct: 521 DYLVLTDIQGLEDFFGDMDFKVAGTHDG-ITAIQMDIKIHGLTRPIVEEAI 570



 Score = 78.6 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 82/226 (36%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+K A G+ L+ +GDT +L+TAT      E +  +  + ++       G +
Sbjct: 59  RTLTVDIGRVAKQANGAALMHYGDTTVLSTATASDKPREGIDFFPLSVEYEEKMYAVGKI 118

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  +    
Sbjct: 119 P---GGFNKRE---GKASEHAVLTSRVIDRPMRPLFPKDYRNDVTLSNMVMSVDPECNPE 172

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ ++                      G  A    G+L G  I++    +    D
Sbjct: 173 IPAMLGSAIS-------------TCISDIPFDGPCATTQVGLLDGEFIINPSLAQKKISD 219

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +D     + LA D   ++IK
Sbjct: 220 LQLTVASTRE-KVIMIEAGANE--LPEDKMIEAIYLAHDVNQEIIK 262


>gi|150390429|ref|YP_001320478.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus
           metalliredigens QYMF]
 gi|187470927|sp|A6TRK1|PNP4_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 4; AltName:
           Full=Polynucleotide phosphorylase 4; Short=PNPase 4
 gi|149950291|gb|ABR48819.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus
           metalliredigens QYMF]
          Length = 704

 Score = 99.4 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 89/225 (39%), Gaps = 26/225 (11%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
            ++ A GSC+V++GDT +L  A    +  E +  +  +  +       G +P   G  +K
Sbjct: 21  YAEQASGSCMVRYGDTTVLVNATASKSPREGIDFFPLSVDYEEKLYAVGKIP---GGFIK 77

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           REA   R   ++    R+I R +R +         Q+I     +  D      A+ G+ +
Sbjct: 78  REA---RPSEKAVLTSRLIDRPIRPLFPKGYRNEVQVIATVMSVDKDYAPDIVAMIGSSI 134

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
           AL                     G   +++ G++ G  +++    + +  D+D     T 
Sbjct: 135 ALS-------------ISDIPFGGPTGSVNVGLVNGEFVLNPTSDQRAISDIDLVVSGTK 181

Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
              I+ ++  A     ++D     L  A + I  ++   +++++ 
Sbjct: 182 DA-IMMIESGANE--VTEDQMLDALMFAHEEIKTIVAFIEEIVAE 223



 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 91/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKH 56
           +R   R  +++R I+    +     G+ L   G T +LT AT     E ++   +   + 
Sbjct: 311 VRPDERALDEIRPITSEVGILPRTHGTGLFTRGQTQVLTVATLGALGEVQILDGLGEEES 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G       + G  G R      +  RAL  +V         I +  
Sbjct: 371 KRYMHHYNFPPYSVGEAK---FLRG-PGRREIGHGALAERALLPMVPSQDDFPYAIRLVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V+ ++G +  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 427 EVLSSNGSSSQASVCGSTLALLDAGV-------------PIKDMVAGIAMGLVKENDKIA 473

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     TD G I  +Q   +     +D     L  A+     ++ 
Sbjct: 474 ILSDIQGMEDALGDMDFKVAGTDKG-ITAIQMDIKIKGIHKDILKDALEQARVGRLHILD 532

Query: 233 LQKDVISNE 241
             K  I   
Sbjct: 533 KMKKAIDKP 541


>gi|270308241|ref|YP_003330299.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Dehalococcoides sp. VS]
 gi|270154133|gb|ACZ61971.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Dehalococcoides sp. VS]
          Length = 720

 Score = 99.4 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 95/250 (38%), Gaps = 27/250 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R++GR   Q+R++     +     GS L   GDT ++   TL    E +    +     
Sbjct: 311 IRVNGRGIKQLRQLDAETGILPRVHGSALFTRGDTQVMAVTTLGSLQESQQLDGLSAEDT 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +    SG  G R      +  RAL  V+         I +  
Sbjct: 371 KRFMLHYNFAPFSTGEVKR----SGSPGRREIGHGALAERALVPVLPTPEEFPYTIRMVA 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
           DV+ + G T   ++  + ++L D                 +K  VA IS G++ G     
Sbjct: 427 DVVGSSGSTSMGSVCSSSLSLMDAGV-------------PVKKAVAGISIGLITGENDTY 473

Query: 174 --IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             I D++  ED+  D+D     T  G I  +Q   +    S D     +  AK+   +++
Sbjct: 474 CTITDIEGIEDNYGDMDFKVAGTRDG-ITAIQVDMKVKGISFDVIRDAIYQAKEARYNIL 532

Query: 232 KLQKDVISNE 241
           ++    ++  
Sbjct: 533 EVMDKALAQP 542



 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 78/230 (33%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLL---TTAT-LEEKVPMWIRNTKHGWITAEYGML 66
           R++ +        A+ +  +++ DT LL     A    E V        +       G +
Sbjct: 14  RKLIIESGKIARLADAAVTIRYADTELLVTLCAAKKPREGVDFLPLTIDYEERMYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  ++RE   GR   ++    R+  R LR ++        QIII       +    
Sbjct: 74  P---GGFIRRE---GRPSEQAILAGRLTDRPLRPLLPKEWRNELQIIITVIASDKENDAD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              + GA   L       E             G V A   G + G  +++  + +     
Sbjct: 128 IWGVVGASTVLTMSQIPYE-------------GPVGASRVGYINGEFVLNPTFAQLEQSQ 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D   V T    +V ++  ++     +D     +  A     +LI LQ +
Sbjct: 175 MDLVVVSTRKA-VVMIEAGSKEIP--EDLMIKAIEFAHQANQELIDLQDE 221


>gi|162447666|ref|YP_001620798.1| polyribonucleotide nucleotidyltransferase (PNPase) [Acholeplasma
           laidlawii PG-8A]
 gi|187470930|sp|A9NGE2|PNP_ACHLI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|161985773|gb|ABX81422.1| polyribonucleotide nucleotidyltransferase (PNPase) [Acholeplasma
           laidlawii PG-8A]
          Length = 715

 Score = 99.4 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 85/249 (34%), Gaps = 27/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTK 55
           +R  GR  +++R ++ +  +     GS L   G T  L   TL       I     + T 
Sbjct: 327 VRPDGRGLDEIRPLASSVDLLPRTHGSALFTRGQTQALGIVTLGSLNENQIIDGLEQETV 386

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P S G   +     G  G R      +  RAL  V+         I + 
Sbjct: 387 TKRFMLHYNFPPFSVGETGR----YGAPGRREIGHGALGERALLQVLPSEDEFPYAIRVV 442

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY-- 172
            ++ +++G +  A I    +AL                   +K  VA I+ G++  G   
Sbjct: 443 SEITESNGSSSQATICVGSMALMAAGV-------------PIKAPVAGIAMGLIMDGEHY 489

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I  +Q   +    + +     L  A+     ++
Sbjct: 490 SILSDIQGMEDHEGDMDFKVAGTKDG-ITALQMDIKIQGITTEIMKEALEQARKGRLHIL 548

Query: 232 KLQKDVISN 240
                VIS 
Sbjct: 549 SHMNTVISE 557



 Score = 85.1 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 86/226 (38%), Gaps = 26/226 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGMLPR 68
            + +    ++K A G+ ++ +GDT +L+TA  + KV     +     +       G +P 
Sbjct: 14  PLRVEVGEIAKQANGAAMIYYGDTVVLSTAVAKAKVGQTDFFPLMVIYAEKQYAAGKIP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR         R+I R LR + D       Q++        +  ++ A
Sbjct: 73  --GGFFRRE---GRPSEVETLTSRLIDRPLRPLFDDGYRNEVQVVNTVLSSDPEASSQMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                +    G +A    G + G  +++    + +  D+D
Sbjct: 128 AMLGSSIAL-------------EISNIPFMGPIAGAHVGRIDGQFVLNPSSEQLNVSDID 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
                T    I  V+  A++   S++     +    + I +L   Q
Sbjct: 175 LIVAGTKDA-INMVEAGAKQ--VSEEVMLEAILFGHEAIKELCAFQ 217


>gi|196231533|ref|ZP_03130391.1| Polyribonucleotide nucleotidyltransferase [Chthoniobacter flavus
           Ellin428]
 gi|196224386|gb|EDY18898.1| Polyribonucleotide nucleotidyltransferase [Chthoniobacter flavus
           Ellin428]
          Length = 716

 Score = 99.4 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 93/256 (36%), Gaps = 35/256 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWIT 60
           R  GR  +Q+R++S    +   + GS L + G+T  +  ATL        +     G  T
Sbjct: 314 RCDGRGLDQIRDLSAEVGLLPRSHGSALFQRGETQAVALATLAPADEAQELDGYTGGETT 373

Query: 61  ----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIID 115
                 Y   P S G   +    +G  G R      +  R++  V+ D++      I + 
Sbjct: 374 KRFILHYNFPPFSVGETGR----TGSPGRREIGHGALAERSVEPVIPDVTKFP-YAIRVS 428

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-----C 170
            +V++++G T  A++    +AL D                 LK  VA ISCG++      
Sbjct: 429 SEVMESNGSTSMASVCSGVLALLDAGV-------------PLKKSVAGISCGLVTEFRAD 475

Query: 171 GYP-----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
           G       + D+   ED   D+D     T  G +   Q   +            +   +D
Sbjct: 476 GQLDRYTMLTDIIGSEDHFGDMDWKLCGTRDG-VTGFQLDLKLPGIPLKMMEEAIYRTRD 534

Query: 226 RIADLIKLQKDVISNE 241
               ++ +    +S  
Sbjct: 535 ARMRVLDVMDSALSQP 550



 Score = 96.7 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 96/237 (40%), Gaps = 32/237 (13%)

Query: 13  EISLTRRVSKY-AEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
            I++        A+G+  V+ G+T +  +A    T++E    +     +    A  G  P
Sbjct: 14  PITIETGKLAKLADGAVTVRSGETIVFISAVSATTVKEGQDFFPLTVDYREKAAAVGKFP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
              G   KRE   GR   +     RM  R LR +     L   QII    ++ ADG    
Sbjct: 74  ---GGYFKRE---GRPSEKEILTCRMTDRPLRPLFPKGYLYDTQII--GVLLSADGEVDP 125

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
               I GA  AL                     G V A+  G + G  I +  + + +  
Sbjct: 126 DILFINGASAAL-------------MVSDIPFAGPVGAVRVGRVNGQFIANPTHSQMADS 172

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           D+D  +V   +  ++ ++G+ +     ++ F A L+ A+  ++ ++ LQ++ ++ +V
Sbjct: 173 DLDLVYVGNATD-VIMIEGAGDEVP--EEQFIAALHFAQTEVSKIVALQQE-LAQKV 225


>gi|114321093|ref|YP_742776.1| polynucleotide phosphorylase/polyadenylase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227487|gb|ABI57286.1| Polyribonucleotide nucleotidyltransferase [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 720

 Score = 99.4 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 87/248 (35%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +         GS +   G+T  +   TL       I +   G    
Sbjct: 339 RIDGRDTRTVRPIDIEVGSLPRTHGSAIFTRGETQAVVVTTLGTGRDAQIIDAIEGERKE 398

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P   G          R+ G      ++  R + +V+  +      I +  +
Sbjct: 399 QFMLHYNFPPYCVGETGFMGTPKRREIGHG----KLAKRGIEAVMPAADDCPYVIRVVSE 454

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A + G  ++L D                 +K  VA I+ G++        
Sbjct: 455 ITESNGSSSMATVCGTSLSLMDAGV-------------PVKAPVAGIAMGLIKEDEQFAV 501

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+SG +  +Q   +    +++     L  A++    ++  
Sbjct: 502 LSDILGDEDHLGDMDFKVAGTESG-VTALQMDIKIQGITREIMEQALEQAREGRLHILGE 560

Query: 234 QKDVISNE 241
             + IS  
Sbjct: 561 MNNAISGP 568



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 76/227 (33%), Gaps = 33/227 (14%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----N 72
           T  V++ A+G+ LV   DT +L TA   ++            +T  Y     + G     
Sbjct: 41  TGGVARQADGAVLVNMSDTVVLVTAVGRKEADP---GKGFFPLTVNYQERTYAAGKIPGG 97

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
             KRE   GR   +     R+I R +R +         Q++     +  +      A+ G
Sbjct: 98  FFKRE---GRPSEKETLTCRLIDRPIRPLFPEGFYNEVQVVATVLSMNPEVDADIPALIG 154

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
           A  AL                     G + A   G   G  +++  + E +  D+D    
Sbjct: 155 ASAALSISGI-------------PFDGPIGAARVGYKDGEYLLNPTFEETAASDLDLVVA 201

Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAM-------LNLAKDRIADLIK 232
            T++  ++     +E     ++            + +A   I +L  
Sbjct: 202 GTENAVLMV---ESEANQLPEEAMLGAVLYGHEQMQVAIQAINELTA 245


>gi|255325195|ref|ZP_05366301.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           tuberculostearicum SK141]
 gi|255297760|gb|EET77071.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           tuberculostearicum SK141]
          Length = 748

 Score = 99.4 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 95/250 (38%), Gaps = 30/250 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
            R+ GR    +R++S+   +   A GS L + G+T +L   TL+    E+    +   + 
Sbjct: 364 FRIDGRGVTDIRDLSVEVDLVPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPVES 423

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 424 KRYMHHYNFPPFSTGETGRVGSPKRREIGHG----ALAERALLPVIPSREDFPYAIRQVS 479

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
           + + ++G T   ++  + ++L++                 LK  VA I+ G++ G     
Sbjct: 480 EALGSNGSTSMGSVCASTLSLYNAGV-------------PLKAPVAGIAMGLVSGEVNGK 526

Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T   +I  +Q   +            L  A+D  +
Sbjct: 527 EKFVALTDILGAEDAFGDMDFKVAGTSE-YITALQLDTKLDGIPSKVLAQALEQARDARS 585

Query: 229 DLIKLQKDVI 238
            +++   +VI
Sbjct: 586 TILETMAEVI 595



 Score = 51.6 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 74/246 (30%), Gaps = 36/246 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R +      +++ A+GS      D T LL T T      E    +             G 
Sbjct: 32  RTLRFETGQLARQADGSVTTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERMYAAGK 91

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q+++       +   
Sbjct: 92  IP---GSFFRRE---GRPSSEAILACRLIDRPLRPTFVKGLRNEVQVVVTVMSQDPEEYY 145

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI GA  A       +       +++ +              G  +   ++ +    
Sbjct: 146 DVVAINGASAATQLSGLPVSGAVGGVRMALIADDK-------HPEGQWVAFPNHEQHERA 198

Query: 186 DVDANFVMT-------DSGHIVEVQ---GS------AERATFSQD-HFFAMLNLAKDRIA 228
             +             D   I+ V+   G+      A+ A   Q+      L  AK  I 
Sbjct: 199 LFEMVVAGRIVKKGRKDDVAIMMVEAGAGTNVAERIADGAPAPQEAAVAEGLEAAKPFIK 258

Query: 229 DLIKLQ 234
            L + Q
Sbjct: 259 TLCEAQ 264


>gi|327312938|ref|YP_004328375.1| polyribonucleotide nucleotidyltransferase [Prevotella denticola
           F0289]
 gi|326944531|gb|AEA20416.1| polyribonucleotide nucleotidyltransferase [Prevotella denticola
           F0289]
          Length = 751

 Score = 99.4 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           R+ GR  +++R I           GS L + G+T  L+T TL  K+   + +      + 
Sbjct: 325 RMDGRATDEIRPIWCEVDTLPMPHGSALFQRGETMSLSTCTLGTKMDEKMVDNVLEKSYQ 384

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P  TG    +  V  R+ G       +  RAL+  +         + +   
Sbjct: 385 RFLLHYNFPPFCTGEAKAQRGVGRREIGHGH----LAWRALKGQIPADF--PYTVRLVSQ 438

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D    M             K  V+ I+ G++        
Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVSGIAMGLIKNPGEDKY 485

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G +   Q   +    S +     L  AK     ++
Sbjct: 486 AVLSDILGDEDHLGDMDFKTTGTRDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHIL 544

Query: 232 KLQKDVISNE 241
            L  D I+  
Sbjct: 545 NLLTDTIAEP 554



 Score = 95.9 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 85/236 (36%), Gaps = 27/236 (11%)

Query: 3   LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       IS+    V+K A+G+ +++ G+T LL T    +E VP            
Sbjct: 11  PDGRT------ISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYR 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y    R  G   KRE   G+         R++ R LR +          + +   ++ 
Sbjct: 65  EQYSAAGRYPGGFTKRE---GKANDDEILTSRLVDRVLRPLFPSDYHCE--VYVQVMLLS 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD            V   D L      +        ++   + +    + G  ++D  + 
Sbjct: 120 AD-----------SVDQPDALAGFAASAALAASDIPIEHPTSEVRVARINGEYVIDPTFE 168

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +    D+D     T   +I+ V+G  E    S+      L  A + I  + ++Q++
Sbjct: 169 QMKEADMDLMVGATKD-NIMMVEG--EMDEVSEQDLIGALKAAHEAIKPMCEMQEE 221


>gi|325688998|gb|EGD31006.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK115]
 gi|325695521|gb|EGD37421.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           SK150]
          Length = 733

 Score = 99.4 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 85/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 IRPDGRKVDEIRPLDAEVDYLPCVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + A  + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           L +  I
Sbjct: 539 LIEATI 544



 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 90/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT AT+ +K      +     +       G  P
Sbjct: 13  RELVVETGQVAKQANGSAVVRYGESTVLTAATMSKKMATGDFFPLQVNYEEKMYAAGKYP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R +         Q+I        D   + 
Sbjct: 73  ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S+D     L    + + +LI  Q+++I+
Sbjct: 174 ELTVAGTKEA-INMVESGAKE--LSEDIMLEALLKGHEAVKELIAFQEEIIA 222


>gi|238926818|ref|ZP_04658578.1| polynucleotide phosphorylase/polyadenylase [Selenomonas flueggei
           ATCC 43531]
 gi|238885350|gb|EEQ48988.1| polynucleotide phosphorylase/polyadenylase [Selenomonas flueggei
           ATCC 43531]
          Length = 689

 Score = 99.4 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 87/235 (37%), Gaps = 28/235 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-----LEEKVPMWIRNTK 55
           +R  GR  +++R +S    +     GS L   G T +L T T      +E++   +    
Sbjct: 310 IRPDGRALDEVRPVSCEVGILPRVHGSGLFTRGQTQVL-TVTTLGSIGDEQIIDGLGPET 368

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G      +   R+ G       +  RAL  ++         I + 
Sbjct: 369 TKHYLHHYNFPGYSVGEARPMRSPGRREIGHG----ALAERALFPMIPSIEDFPYTIRLV 424

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            ++++++G +   ++ G+ ++L                   +K  V+ ++ G++      
Sbjct: 425 SEILESNGSSSMGSVCGSTLSLMCAGV-------------PIKRPVSGVAMGLVRDGDDY 471

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             + D+   ED+  D+D     T  G I  +Q   + A  ++D   + L  AK  
Sbjct: 472 SILTDIQGMEDALGDMDFKVAGTSKG-ITAIQMDIKIAGITRDILASALEQAKQG 525



 Score = 95.5 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 85/229 (37%), Gaps = 27/229 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R++++      K A G+ LV++GDT +L TAT      E V  +     +       G +
Sbjct: 11  RKLTVEYGKMAKQANGAVLVRYGDTVVLVTATASKAPREGVDFFPLTVDYEEKMYAAGKI 70

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR    +    R+I R +R +         QI+     ++ D    
Sbjct: 71  P---GGFIKRE---GRPSSDAVLCARLIDRPIRPLFPDGFRNDVQIVATVLSVEQDNPAE 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA  AL                     G +A +  G + G  +++    E+   D
Sbjct: 125 IAAMLGASCAL-------------TISDIPFMGPIAGVRVGYINGSFVINPT--EEQRAD 169

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            D N  +  S   V +  +       ++     +      I  L++ Q+
Sbjct: 170 SDLNLTVAGSYDAVMMVEAG-ANELPEEIVLDAILFGHAEIRRLVEFQQ 217


>gi|303238032|ref|ZP_07324575.1| polyribonucleotide nucleotidyltransferase [Prevotella disiens
           FB035-09AN]
 gi|302481822|gb|EFL44874.1| polyribonucleotide nucleotidyltransferase [Prevotella disiens
           FB035-09AN]
          Length = 739

 Score = 99.4 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 85/250 (34%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57
           R+ GR  +++R I           GS   + G+T  L T TL  K+   +     +  + 
Sbjct: 316 RMDGRACDEIRPIWCEVDPLPMPHGSAYFQRGETLALATCTLGTKLDEKMVDNVLDKSYQ 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P  TG    +  V  R+ G       +  R L+ ++         + +   
Sbjct: 376 RFLLHYNFPPFCTGEAKAQRGVGRREIGHGH----LAWRGLKGMIPEDF--PYTVRLVSQ 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           V++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 430 VLESNGSSSMATVCSGTLALMDAGV-------------PIKKPVSGIAMGLIKNPGEDKY 476

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     L  AK     ++
Sbjct: 477 AVLSDILGDEDHLGDMDFKTTGTRDG-ITATQMDIKCDGLSFEILEKALMQAKQAREFIL 535

Query: 232 KLQKDVISNE 241
               + I   
Sbjct: 536 DKITETIPEP 545



 Score = 99.0 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 92/233 (39%), Gaps = 22/233 (9%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWITAEYGMLPRS 69
           R I++    V+K A+G+ +++ G+T LL T    +E VP             +Y    R 
Sbjct: 5   RNITIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYSAAGRF 64

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   KRE   G+         R++ R LR +         ++ +   ++ ADG      
Sbjct: 65  PGGFTKRE---GKANDDEILTSRLVDRVLRPLFPSD--YHTEVFVSVMLLSADG------ 113

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
                V + D L      +        ++  ++ +    + G  I++  + +    D+D 
Sbjct: 114 -----VDMPDALAGFAASAAMQCSDIPIEHPISEVRVARVNGEYIINPTFEQMKEADMDI 168

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
               T   +I+ V+G  E    S+      L  A D I  + ++Q++ ++ E+
Sbjct: 169 MVGATKD-NIMMVEGEMEE--VSEQDLIDALKAAHDAIKPMCEIQEE-LAKEL 217


>gi|325859693|ref|ZP_08172823.1| polyribonucleotide nucleotidyltransferase [Prevotella denticola
           CRIS 18C-A]
 gi|325482619|gb|EGC85622.1| polyribonucleotide nucleotidyltransferase [Prevotella denticola
           CRIS 18C-A]
          Length = 742

 Score = 99.4 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           R+ GR  +++R I           GS L + G+T  L+T TL  K+   + +      + 
Sbjct: 316 RMDGRATDEIRPIWCEVDTLPMPHGSALFQRGETMSLSTCTLGTKMDEKMVDNVLEKSYQ 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P  TG    +  V  R+ G       +  RAL+  +         + +   
Sbjct: 376 RFLLHYNFPPFCTGEAKAQRGVGRREIGHGH----LAWRALKGQIPADF--PYTVRLVSQ 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D    M             K  V+ I+ G++        
Sbjct: 430 ILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVSGIAMGLIKNPGEDKY 476

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G +   Q   +    S +     L  AK     ++
Sbjct: 477 AVLSDILGDEDHLGDMDFKTTGTRDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHIL 535

Query: 232 KLQKDVISNE 241
            L  D I+  
Sbjct: 536 NLLTDTIAEP 545



 Score = 95.9 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 85/236 (36%), Gaps = 27/236 (11%)

Query: 3   LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       IS+    V+K A+G+ +++ G+T LL T    +E VP            
Sbjct: 2   PDGRT------ISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYR 55

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y    R  G   KRE   G+         R++ R LR +          + +   ++ 
Sbjct: 56  EQYSAAGRYPGGFTKRE---GKANDDEILTSRLVDRVLRPLFPSDYHCE--VYVQVMLLS 110

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD            V   D L      +        ++   + +    + G  ++D  + 
Sbjct: 111 AD-----------SVDQPDALAGFAASAALAASDIPIEHPTSEVRVARINGEYVIDPTFE 159

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +    D+D     T   +I+ V+G  E    S+      L  A + I  + ++Q++
Sbjct: 160 QMKEADMDLMVGATKD-NIMMVEG--EMDEVSEQDLIGALKAAHEAIKPMCEMQEE 212


>gi|312380418|gb|EFR26416.1| hypothetical protein AND_07550 [Anopheles darlingi]
          Length = 738

 Score = 99.4 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 85/242 (35%), Gaps = 16/242 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIR 52
           +R  GR  + +R IS +  + K   GS L + G T + +T  L+        + V     
Sbjct: 310 VRCDGRGLDDLRPISCSVNLHKPLHGSALFQRGQTQVFSTVALDSPESALRLDPVTSLDA 369

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
             K       Y   P +TG   K     G  G R      +  + L  ++         I
Sbjct: 370 GMKSKNFFLHYEFPPYATGETGK----IGPIGRREIGHGALAEKGLVPIIPAE--HPFTI 423

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            +  +V++++G +  A +    +AL D    + + +    +  V K      +  +L   
Sbjct: 424 RLTSEVLESNGSSSMATVCAGSMALMDAGVPVTEAAAGVAIGLVTKYENND-TKHLLDYR 482

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + DL   ED   D+D     T  G I  +Q   +            L  + +    ++ 
Sbjct: 483 ILSDLLGIEDYMGDMDMKVAGTRRG-ITAIQADLKIPGIPLKVVMEALQKSMEARFKILD 541

Query: 233 LQ 234
           + 
Sbjct: 542 IM 543



 Score = 82.8 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 85/231 (36%), Gaps = 27/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + ++    +++A+G  +V  GDT ++ TA   +K     +NT    +  +Y     + 
Sbjct: 7   RVVRISSGKYARFADGCAVVTIGDTAVMVTAVARQK----SQNTSFLPLVVDYRQKSAAA 62

Query: 71  GNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
           G R+    +    G   +EI   R++ R++R +         QI+ +   I +       
Sbjct: 63  G-RIPTNFLRRELGPSEKEILSARLVDRSIRPLFPADFRLDTQIVCNMLAIDSSNPPDVQ 121

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           AI GA  AL                     G V A+  G++    IV+    E     +D
Sbjct: 122 AINGASAALA-------------LSDIPWNGPVGAVRLGLVDNEVIVNPTRREMQLSALD 168

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI----KLQK 235
                T    +V ++G       +++     +         +I    +LQK
Sbjct: 169 LVVTATRQNLVVMLEG--RGNVVNENEIRMAIKRGTKEAQLIINGIERLQK 217


>gi|15807057|ref|NP_295786.1| polynucleotide phosphorylase/polyadenylase [Deinococcus radiodurans
           R1]
 gi|6459851|gb|AAF11608.1|AE002042_3 polynucleotide phosphorylase [Deinococcus radiodurans R1]
          Length = 810

 Score = 99.4 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 91/247 (36%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTATLEEKVPMWIRN---TKH 56
           +R  GR    +R I +  R    A GS +   G+T +L  T    E+  + I +      
Sbjct: 349 LRADGRDSKTVRPIWIEARPLPTAHGSAVFTRGETQVLGVTTLGTERDEILIDDLTAESG 408

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +     G Q  R      +  RA+R+V+         I +  
Sbjct: 409 DKFLLHYNFPPYSTGEVKR----MGGQSRREIGHGNLAKRAIRAVLPSFEEFPYVIRVVG 464

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           DV++++G +    +    ++L D                 LK  VA ++ G++       
Sbjct: 465 DVLESNGSSSMGTVCAGTLSLMDAGV-------------PLKAPVAGVAMGLVMEGDNYR 511

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G +  +Q   +    +       L  AK+    ++ 
Sbjct: 512 VLTDILGLEDALGDMDFKVCGTAEG-VTALQMDIKVGGITPQIMREALAQAKEGRLHILG 570

Query: 233 LQKDVIS 239
              +V++
Sbjct: 571 KMAEVLA 577



 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 86/238 (36%), Gaps = 31/238 (13%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           RE+S+          GS  V++GDT LL TA   +             +T E+     + 
Sbjct: 44  RELSIETGKLAKLVSGSVTVRYGDTLLLVTAQASDTQSKLDFLP----LTVEFEERHYAV 99

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G    +  +RE   GR G ++    R+  R +R +         Q+II   V+ ADG   
Sbjct: 100 GKIPGSFQRRE---GRPGEKAILSARITDRQIRPLFPKGYRHETQVIIT--VLSADGQN- 153

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                       D L  +   +          G  A +  G + G  +V+    + +   
Sbjct: 154 ----------APDVLGPIGAAAALSISDIPWAGPTACVRVGQIDGQYVVNPTTEQLTRSR 203

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA---KDRIADLIKLQKDVISNE 241
           +D     T    ++ V+  A+  T S+D     +  A      +  LI+  +  + +E
Sbjct: 204 MDLVVAGTREA-VMMVECGAQ--TVSEDDLVGAIEFAHAEMQGVIALIEQMRAEVGHE 258


>gi|159028376|emb|CAO87274.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 717

 Score = 99.4 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 88/251 (35%), Gaps = 28/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----T 54
           +R+ GR+ +++R IS    V  +   GS L   G T +L+ ATL                
Sbjct: 322 VRVDGRKLDEVRPISCLVGVLPRRVHGSGLFNRGLTQVLSIATLGTPGDAQDLGDDLHPE 381

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y   P S G      +   R+ G       +  RA+  V+         + +
Sbjct: 382 DEKRYLHHYNFPPFSVGETRPMRSPGRREIGHG----ALAERAIVPVLPPQEEFPYVLRV 437

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V+ ++G T   ++ G+ +AL D                 LK  V+  + G++     
Sbjct: 438 VSEVLSSNGSTSMGSVCGSTLALMDAGV-------------PLKKPVSGAAMGLIKEGEE 484

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     TDSG I  +Q   +    + +     +  A      +
Sbjct: 485 VRILTDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKIPGLTMEVVAKAIEQALPARKHI 543

Query: 231 IKLQKDVISNE 241
           ++     +   
Sbjct: 544 LEKMLATLEKP 554



 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 92/231 (39%), Gaps = 26/231 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           R+I L   +    A GS L++ G+T +L TAT     E V        +       G +P
Sbjct: 13  RDIRLKIGLLAPQAGGSVLIQSGETAVLVTATTAKAREGVDFLPLTVDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   GR   ++    R+I R LR +         Q++     +  +     
Sbjct: 73  ---GGFLRRE---GRPPEKAILTGRLIDRPLRPLFPSWLRDDIQVVATTLSMDEEVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA VA+                    +G +AA+  G+L    I++  Y E    ++
Sbjct: 127 LAVTGASVAVLLAGI-------------PFQGPMAAVRVGLLGDEFIINPTYKEIHNGEL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D     +  G +V ++  A +    +      ++   + + DLI  Q+++I
Sbjct: 174 DLVVAGSPEG-VVMIEAGANQ--LPERDIIEAIDFGYEAVRDLITAQRELI 221


>gi|148225933|ref|NP_001079391.1| exosome component 8 [Xenopus laevis]
 gi|27371055|gb|AAH41271.1| MGC52847 protein [Xenopus laevis]
 gi|76779666|gb|AAI06634.1| MGC52847 protein [Xenopus laevis]
          Length = 276

 Score = 99.0 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 89/256 (34%), Gaps = 23/256 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+  +L     E   P    +   G++  
Sbjct: 23  RPDGRELTEFRTTTINVGSITTADGSALVKLGNCTVLCGVKAELAAPP-ADSPDKGYVVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGG-RSQEIQRMIGRALRSVVDLSAL----GSRQIIIDC 116
              + P  +     R    G +    SQ +  +I  +   ++    L    G    ++ C
Sbjct: 82  NVDLTPLCSSQF--RPGPPGEEAQVASQFMADVIDNS--QMLLKEDLCIAHGKLAWVLYC 137

Query: 117 DV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAIS 165
           D+  +  DG      +     AL +             + + + K + +  +  H  A S
Sbjct: 138 DLICLDYDGNLLDTCMCALVAALQNVRLPSVKINEETGLAEVNLKTKCALKILKHPVATS 197

Query: 166 CGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
             +      +VD    E+S        V  +   +   +     +  S +     ++ A 
Sbjct: 198 FALFDDTSLLVDPTGEEESLASGLLTVVTDEDERLCATRKPG-GSALSAEKLQECISRAI 256

Query: 225 DRIADLIKLQKDVISN 240
            R  ++  L ++ +++
Sbjct: 257 TRHKEVTNLLQEALAS 272


>gi|157803761|ref|YP_001492310.1| polynucleotide phosphorylase/polyadenylase [Rickettsia canadensis
           str. McKiel]
 gi|187611280|sp|A8EYU2|PNP_RICCK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157785024|gb|ABV73525.1| polyribonucleotide nucleotidyltransferase [Rickettsia canadensis
           str. McKiel]
          Length = 747

 Score = 99.0 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 91/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R+I+    +   A GS L   G+T  L ++TL   +   I +   G    
Sbjct: 316 RIDGRSTMDIRQIACEVGLLPSAHGSALFTRGETQSLVSSTLGTSLDEQIVDNLEGEYKE 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S    +  +A S R+ G      ++  RA+  ++         I +  +
Sbjct: 376 RFMLNYIFPPYSVNEAMPMKAPSRREVGHG----KLAWRAINPILPNKVQFPYSIRVVAE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
             +++G +  A + G+ +AL                   +K  VA I+ G++        
Sbjct: 432 TTESNGSSSMATVCGSSLALMQTGI-------------PIKAPVAGIAMGLVKEGKKFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   + +          L  A+     +++ 
Sbjct: 479 LSDILGDEDYFGDMDFKVAGTSEG-ITALQMDIKISGVDFKIMKVALEQARLGRLHILEQ 537

Query: 234 QKDVISNE 241
              VIS  
Sbjct: 538 MNKVISKP 545



 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 87/227 (38%), Gaps = 29/227 (12%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           +++ A+GS  VK G++ LL TA +    +E +  +     +  +    G +P   G   K
Sbjct: 23  IARQADGSVTVKMGNSVLLCTAVVANTAKEGIGFFPLTINYREMAYAVGKIP---GGFFK 79

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE   G+   R   + R+I R +R +   + +      + C V+  D  T          
Sbjct: 80  RE---GKASEREVLVSRLIDRPIRPLFHPAFVNET--HVTCTVLSYDPET---------- 124

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV-MT 194
              D L  +   +            VAA   G++ G  +++       T  +D      T
Sbjct: 125 -PVDILAIIGASAALALSPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQLDLVVAGTT 183

Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           +S  +VE    +E    S+      +    +    ++K+ K+ ++ E
Sbjct: 184 ESVMMVE----SEAHLLSEAQMLEAVKFGFESFQPVVKIIKE-LAEE 225


>gi|307187131|gb|EFN72375.1| Exosome complex exonuclease RRP43 [Camponotus floridanus]
          Length = 284

 Score = 99.0 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 84/258 (32%), Gaps = 25/258 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+    R +S+       A+ S + K GDT  +     E   P       HG+I 
Sbjct: 22  IRPDGRKFLSFRPVSVNVSSIVQADSSAIFKLGDTSAVCGIKAELATPK-ADIPDHGYIV 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALG---SRQIII- 114
               + P  +          G    ++Q + ++I   L     +DL  L    ++ + + 
Sbjct: 81  PNVELSPLCSPKFR-----PGPPSEQAQVLSKLIDIVLSNSRALDLKDLCICKNKLVWVL 135

Query: 115 DCDV--IQADGGTRTAAITGAWVALHDCLQH--MEDCSNKFQLSQV-------LKGHVAA 163
            CD+  +  +G    A I     AL          +      ++         ++    +
Sbjct: 136 YCDILCLNYNGSVIDACIGAMIAALKTLTLPEINYNSETGVIVTHPENRKAFTVRTLPVS 195

Query: 164 ISCGMLCGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
            S  +     ++ D    E+       + VM D   I  +         SQ+     L +
Sbjct: 196 ASFAIFEKQLLLVDPSDDEEDMSSTRFSIVMDDEEEICYIHKPG-GIPISQNLLCKGLEM 254

Query: 223 AKDRIADLIKLQKDVISN 240
            K R   +  +    IS 
Sbjct: 255 TKVRAKSIRSVINAAIST 272


>gi|304383335|ref|ZP_07365801.1| polyribonucleotide nucleotidyltransferase [Prevotella marshii DSM
           16973]
 gi|304335503|gb|EFM01767.1| polyribonucleotide nucleotidyltransferase [Prevotella marshii DSM
           16973]
          Length = 780

 Score = 99.0 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 88/250 (35%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHG 57
           RL GR+ +++R I           GS +   G+T  LTT TL  K+   +     +  + 
Sbjct: 325 RLDGRRTDEIRPIWCEVSPLPMPHGSAIFTRGETQSLTTCTLGTKLDEKMIDDVLDKSYQ 384

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P  TG    + +V  R+ G       +  R L+  +         + +   
Sbjct: 385 RFILHYNFPPFCTGEARPQRSVGRREIGHGH----LAWRGLKGQIPAD--YPYTVRLVSQ 438

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D    M             K  V+ I+ G++        
Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVSGIAMGLIKNPGEDKY 485

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G +   Q   +    S +     L  AK     ++
Sbjct: 486 AVLSDILGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFEILEEALMQAKAGREHIL 544

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 545 GKITETIAEP 554



 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 90/242 (37%), Gaps = 28/242 (11%)

Query: 3   LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       IS+    ++K  +GS +V+ G+T LL T    ++ VP            
Sbjct: 11  PDGRS------ISVETGRLAKQTDGSVVVRMGNTVLLATVCAAKDAVPGTDFMPLQVDYR 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y    R  G   KRE   G+         R++ R LR +   +     ++ ++  ++ 
Sbjct: 65  EQYAAAGRFPGGFTKRE---GKPSDNEILTSRLVDRVLRPLFPSN--YHAEVFVNVMLLS 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           +   D L      +           H++ +    + G  +V+    
Sbjct: 120 ADG-----------IDQPDALAGFAASAAMACSDIPFDFHISEVRVARVNGKYVVNPTSE 168

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +    D+D     T   +I+ V+G  E    S+      L +A   I  +  +Q++ +S 
Sbjct: 169 QMKEADMDIMVGATKD-NIMMVEG--EMKEVSEQDLIEALKVAHQAIIPMCDVQEE-LSK 224

Query: 241 EV 242
           E+
Sbjct: 225 EL 226


>gi|218245144|ref|YP_002370515.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC
           8801]
 gi|257058170|ref|YP_003136058.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC
           8802]
 gi|226702645|sp|B7K339|PNP_CYAP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218165622|gb|ACK64359.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 8801]
 gi|256588336|gb|ACU99222.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 8802]
          Length = 718

 Score = 99.0 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 93/232 (40%), Gaps = 26/232 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTT---ATLEEKVPMWIRNTKHGWITAEYGMLP 67
           R+I L   +    A GS L++ GDT +L T   AT  E +        +       G +P
Sbjct: 13  RDIRLKLGLLAPQAGGSVLIQSGDTAVLVTATRATGREGIDFLPLTVDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   GR   ++  I R+I R LR +         QII     +  +     
Sbjct: 73  ---GGFLRRE---GRPPEKAILISRLIDRPLRPLFPQWLRDDIQIIATTLSMDEEVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA +A+                     G +AA+  G++    I++  Y E    D+
Sbjct: 127 LAVTGASIAVIAA-------------RIPFFGPMAAVRVGLIGDDFIINPTYREIEIGDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D     +  G +V V+  A +    +      ++   + + DLI+ Q+DV+ 
Sbjct: 174 DLVVAGSPDG-VVMVEAGANQ--LPEQDIIEAIDFGYEAVRDLIQAQRDVME 222



 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 89/251 (35%), Gaps = 28/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNT 54
           +R+ GR+ +++R IS    +  +   GS L   G T +L+ ATL            +   
Sbjct: 323 VRVDGRKLDEVRPISSRVCLLPRRVHGSALFARGLTQVLSLATLGTPGDAQDLADDLHPE 382

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y   P S G      +   R+ G       +  RA+  ++         I +
Sbjct: 383 DEKRYLHHYNFPPFSVGETKPLRSPGRREIGHG----ALAERAITPILPPQEEFPYVIRV 438

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V+ ++G T   ++ G+ +AL D                 +   V+  + G++     
Sbjct: 439 VSEVLSSNGSTSMGSVCGSTLALMDAGV-------------PITKPVSGAAMGLIKEGDE 485

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     TDSG I  +Q   +    S +     +  A      +
Sbjct: 486 VRILTDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLSMEIVAKAIEQALPARLHI 544

Query: 231 IKLQKDVISNE 241
           +    + +S  
Sbjct: 545 LDKMMETLSTP 555


>gi|332667455|ref|YP_004450243.1| polyribonucleotide nucleotidyltransferase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332336269|gb|AEE53370.1| Polyribonucleotide nucleotidyltransferase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 777

 Score = 99.0 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 90/243 (37%), Gaps = 20/243 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----H 56
           +RL GR  +++R I           GS +   G+T  LT+ TL  K    + +      H
Sbjct: 324 IRLDGRGPSEIRHIWSEVDYLPSTHGSAIFTRGETQALTSLTLGTKTDEQMIDNSQEMYH 383

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G +     +  R+LR V+         + I  
Sbjct: 384 EKFILHYNFPGYSVGEVKPSRGPGRREVGHA----NLAARSLRKVMPADL--PYTVRIVS 437

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           D+++++G +  A +    +AL D    ++   +   +  + +G   AI         + D
Sbjct: 438 DILESNGSSSMATVCAGTLALMDAGIKIKAPVSGIAMGMIKEGDRVAI---------LSD 488

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T++G I   Q   +      D     L+ A++    ++   K 
Sbjct: 489 ILGDEDALGDMDFKVTGTENG-ITGCQMDIKIDGLPYDLLVRALSQAREGRLHILNEMKK 547

Query: 237 VIS 239
            I 
Sbjct: 548 TIE 550



 Score = 78.6 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 77/230 (33%), Gaps = 31/230 (13%)

Query: 3   LSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
             G      RE+ +        A+GS +V+ G+T +   AT +++            ++ 
Sbjct: 14  PDG------REVIIETGKLATQADGSVVVRCGNTMIFAVATSDKEA---RAGQDFFPLSV 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           +Y     ++  R+              EI   R++ RA+R +     +   QI+I+    
Sbjct: 65  DYQ-EKFASSGRIPGNFFRRETKLSDYEILCSRLVDRAIRPLFPNHYMNDTQIMINL--- 120

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
                     I+     + D    +   +         +G ++ +    + G  +++   
Sbjct: 121 ----------ISVEKNEMPDAFVALAASAALSVSDIPFQGPISEVRVARINGEFVINPGK 170

Query: 180 GEDSTIDVDANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
               T D+D     T     +VE     E     ++     L +A + I 
Sbjct: 171 EALKTADIDLIVAATLQDITMVE----GEAKEMDEESMIDALRIAHEAIK 216


>gi|223933942|ref|ZP_03625902.1| Polyribonucleotide nucleotidyltransferase [Streptococcus suis
           89/1591]
 gi|302024508|ref|ZP_07249719.1| polynucleotide phosphorylase/polyadenylase [Streptococcus suis
           05HAS68]
 gi|330833543|ref|YP_004402368.1| polyribonucleotide nucleotidyltransferase [Streptococcus suis ST3]
 gi|223897389|gb|EEF63790.1| Polyribonucleotide nucleotidyltransferase [Streptococcus suis
           89/1591]
 gi|329307766|gb|AEB82182.1| Polyribonucleotide nucleotidyltransferase [Streptococcus suis ST3]
          Length = 739

 Score = 99.0 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 87/247 (35%), Gaps = 28/247 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   + +   
Sbjct: 317 VRPDGRRVDEIRPLDAEVDFLPNVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLGDEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIID 115
                 Y     S G+  +     G  G R      +  RAL  V+  L       I + 
Sbjct: 377 KRFLHHYNFPQYSVGSTGR----YGAPGRREIGHGALGERALEQVLPSLEDFP-YAIRLV 431

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V++++G +  A+IT   +AL                   +K  VA I+ G++      
Sbjct: 432 AEVLESNGSSSQASITAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNY 478

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I  +Q   +    +       L  AK    +++
Sbjct: 479 TVLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIDGITPQILEEALAQAKKARFEIL 537

Query: 232 KLQKDVI 238
            + +  I
Sbjct: 538 DVIEATI 544



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 86/231 (37%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
           ++ +    V+K A G+ +V++GD+ +LT A + +K      +     +       G  P 
Sbjct: 14  KLVVETGQVAKQANGAVVVRYGDSTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR    +    R+I R +R +         Q+I        D     A
Sbjct: 73  --GGWMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDPDASAPMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +  G + G  I++ D  +     +D
Sbjct: 128 AMFGSSLALA-------------ISDIPFNGPIAGVQVGYVNGELIINPDKAQMEESLLD 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                     I  V+  A+    S+D     L    + I +L+  Q  +++
Sbjct: 175 LTVAGNKDA-INMVESGAKE--LSEDIMLEALLKGHEAIQELLDFQNQIVA 222


>gi|15602979|ref|NP_246051.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|81636811|sp|Q9CLU1|PNP_PASMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|12721458|gb|AAK03198.1| Pnp [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 714

 Score = 99.0 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 93/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +    I +   G    
Sbjct: 317 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERSD 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 377 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPTLAEFPYVVRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDEKFVV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    + +     LN AK     ++ +
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTRTG-VTALQMDIKIEGITAEIMQIALNQAKSARLHILGV 538

Query: 234 QKDVI 238
            +  I
Sbjct: 539 MEQAI 543



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 73/228 (32%), Gaps = 27/228 (11%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A  + +    DT +  T      ++E    +     +   T   G +P 
Sbjct: 15  VTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR       I R+I R +R +         QI+     +         
Sbjct: 74  --GGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFYNEIQIVATVVSVNPQICPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD   ++     +E    +++   A +     +   +I   K+
Sbjct: 176 LVVAGTDKAVLMV---ESEADVLTEEQMLAAVVFGHQQQQVVIDAIKE 220


>gi|195053730|ref|XP_001993779.1| GH21615 [Drosophila grimshawi]
 gi|193895649|gb|EDV94515.1| GH21615 [Drosophila grimshawi]
          Length = 760

 Score = 99.0 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 85/249 (34%), Gaps = 17/249 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------- 54
           R  GR  + +R I+    + K   GS L + G T +  T +L+ +      +T       
Sbjct: 346 RCDGRDYDSLRNINCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDTLAALESG 405

Query: 55  --KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
             K       Y   P +TG   +     G  G R      +  R L   +         +
Sbjct: 406 GLKAKNFMLHYEFPPYATGEVGR----IGPLGRRELGHGALAERGLLPTLPHD--YPFTV 459

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            +  +V++++G +  A++ G  +AL D    +   +    +  V K      +  +    
Sbjct: 460 RLTSEVLESNGSSSMASVCGGSLALMDAGVPIIAPAAGVAIGLVTKYENED-TKHLQDYR 518

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G    +Q   +            L  A D  A ++ 
Sbjct: 519 ILTDILGIEDYMGDMDMKVAGTRKG-FTAIQADLKIPGIPLKVVMESLQKATDAKAKILD 577

Query: 233 LQKDVISNE 241
           +  D I   
Sbjct: 578 IMADTIREP 586



 Score = 82.8 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 83/236 (35%), Gaps = 36/236 (15%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R ++L+     ++A G+ + + GDT ++ TA  + K            +  +Y     ++
Sbjct: 41  RNMTLSSGKLARFANGTAVCQMGDTAVMVTAVAKAKATP---GQNFMPLVVDYRQKNAAS 97

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G    N ++RE        R     R+I R+LR +         Q++ +   + A     
Sbjct: 98  GRIPMNFMRRELG---PSEREILSARLIDRSLRPLFPKDYRNETQLVCNMLAMDAVHSPD 154

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI  A +AL                     G + A+  G+  G  +++    E  +  
Sbjct: 155 ILAINAASMALS-------------VSDIPWHGPIGAVRVGLCDGEVLINPTRRELQSSQ 201

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-------IADLIKLQK 235
           +D     T    +V ++G              +L   K         I ++ +LQK
Sbjct: 202 LDLVVSATKQNLVVMLEGKGNVVL-----MQDLLKAIKQGTREAQFIIHEIERLQK 252


>gi|326473180|gb|EGD97189.1| exosome complex endonuclease 1/ribosomal RNA processing protein
           [Trichophyton tonsurans CBS 112818]
          Length = 286

 Score = 99.0 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 68/206 (33%), Gaps = 25/206 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ N++R +      +  + GS  +  G+T +L T     +              
Sbjct: 14  LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKR----------- 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
                   +   + K    SG    + + E+   +  A +  +         I +   V+
Sbjct: 63  ---SETAGAAAQKKKSTTGSGGGDRQATTELANSLRDAFQPHIHAHLYPRSTISVHVSVL 119

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC--GMLCG-----Y 172
            +DG    A +    +AL D    M        +    +    A++     + G      
Sbjct: 120 SSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGRASTPAVTAESAQIGGINESLD 179

Query: 173 PIVDLDYGED---STIDVDANFVMTD 195
           P++D+   E+     + V     M D
Sbjct: 180 PLLDISAPEEVELPYMTVANTNPMPD 205


>gi|291229746|ref|XP_002734834.1| PREDICTED: exosome component 9-like [Saccoglossus kowalevskii]
          Length = 421

 Score = 99.0 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 91/260 (35%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GRQ    R   ++        G C V+ GDT +L   + E   P   R T+ G +  
Sbjct: 53  RVDGRQAYDFRNAKISFG---QDLGHCEVQLGDTRVLCQVSCEIIEPRQNRPTEGG-LYF 108

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              + P ++          GRQ     EI R + + +R    +D  +L    G +  +I 
Sbjct: 109 NVELSPMASP-----LFEPGRQSEFGIEIIRFLEKTVRDSRAIDTESLCIVAGEKVWEIR 163

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           ID  V+  DG         A  AL    +           +   +++  +S  +     +
Sbjct: 164 IDIHVLNHDGNIMDCVTMAAVTALSHFRRPDVSVVGEDVQVHSAADRDPVSLSVHHLPVS 223

Query: 164 ISCGMLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           ++        Y +VD    E+  +D      M     +     S       +D       
Sbjct: 224 VTFAYFDEGKYLLVDPTEREECVMDGSMILSMNIHRELCTAHMSG-DMLLVKDQIIRCTQ 282

Query: 222 LAKDRIADLIKLQKDVISNE 241
            A  ++++L  L K  + N+
Sbjct: 283 TAIVKVSELTDLIKKALEND 302


>gi|320165922|gb|EFW42821.1| exosome component Rrp46 [Capsaspora owczarzaki ATCC 30864]
          Length = 227

 Score = 99.0 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 86/240 (35%), Gaps = 21/240 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+RE+S+   V   A+GS      DT  LT      +V              
Sbjct: 4   RADGRMPNQLRELSIEHAVLSRADGSSRFSQRDTSALTAVYGPAEVKSSK---------- 53

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
              +L ++T   V R   +G  G      + ++ +AL  V+  +A     I +   V+  
Sbjct: 54  --ELLDKATVQTVFRP-KTGLAGVDDHVCEAILRQALEPVIQRTANPRTSITVIVQVMHD 110

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DG     A+  A +AL D    M         + +          G      ++D    E
Sbjct: 111 DGALLACALNSASMALIDAGVPMSAVLAAVTCAWLPAAD------GSSERRLLLDPTLEE 164

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
            +     A F    +    E+  S+     + D +F  + +A+   A+++   +  +  +
Sbjct: 165 QTAATSIATFAFESTNQ--EIVFSSTEGQLTVDEYFYTIEMAQKAAANVLAFMRLSLERK 222


>gi|187610335|sp|Q9RSR1|PNP_DEIRA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 779

 Score = 99.0 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 91/247 (36%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTATLEEKVPMWIRN---TKH 56
           +R  GR    +R I +  R    A GS +   G+T +L  T    E+  + I +      
Sbjct: 318 LRADGRDSKTVRPIWIEARPLPTAHGSAVFTRGETQVLGVTTLGTERDEILIDDLTAESG 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +     G Q  R      +  RA+R+V+         I +  
Sbjct: 378 DKFLLHYNFPPYSTGEVKR----MGGQSRREIGHGNLAKRAIRAVLPSFEEFPYVIRVVG 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           DV++++G +    +    ++L D                 LK  VA ++ G++       
Sbjct: 434 DVLESNGSSSMGTVCAGTLSLMDAGV-------------PLKAPVAGVAMGLVMEGDNYR 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G +  +Q   +    +       L  AK+    ++ 
Sbjct: 481 VLTDILGLEDALGDMDFKVCGTAEG-VTALQMDIKVGGITPQIMREALAQAKEGRLHILG 539

Query: 233 LQKDVIS 239
              +V++
Sbjct: 540 KMAEVLA 546



 Score = 71.7 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 86/238 (36%), Gaps = 31/238 (13%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           RE+S+          GS  V++GDT LL TA   +             +T E+     + 
Sbjct: 13  RELSIETGKLAKLVSGSVTVRYGDTLLLVTAQASDTQSKLDFLP----LTVEFEERHYAV 68

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G    +  +RE   GR G ++    R+  R +R +         Q+II   V+ ADG   
Sbjct: 69  GKIPGSFQRRE---GRPGEKAILSARITDRQIRPLFPKGYRHETQVIIT--VLSADGQN- 122

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                       D L  +   +          G  A +  G + G  +V+    + +   
Sbjct: 123 ----------APDVLGPIGAAAALSISDIPWAGPTACVRVGQIDGQYVVNPTTEQLTRSR 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA---KDRIADLIKLQKDVISNE 241
           +D     T    ++ V+  A+  T S+D     +  A      +  LI+  +  + +E
Sbjct: 173 MDLVVAGTREA-VMMVECGAQ--TVSEDDLVGAIEFAHAEMQGVIALIEQMRAEVGHE 227


>gi|282878811|ref|ZP_06287578.1| polyribonucleotide nucleotidyltransferase [Prevotella buccalis ATCC
           35310]
 gi|281299019|gb|EFA91421.1| polyribonucleotide nucleotidyltransferase [Prevotella buccalis ATCC
           35310]
          Length = 778

 Score = 99.0 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 92/242 (38%), Gaps = 28/242 (11%)

Query: 3   LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       IS+    V+K A+GS +V+ G+T LL T    ++ VP            
Sbjct: 11  PDGRT------ISIETGKVAKQADGSAVVRLGNTVLLATVCAAKDAVPGTDFMPLQVDYR 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y    R  G   KRE   G+         R++ RALR +   +     ++ +   ++ 
Sbjct: 65  EQYSAAGRFPGGFTKRE---GKPSDNEILTSRLVDRALRPLFPSN--YHAEVYVQIMLLS 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           V   D L  +   +           +++ +    + G  +++  + 
Sbjct: 120 ADG-----------VDQPDALAGLAASAAMACSDIPFDFYISEVRVARINGEYVINPTFE 168

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +    D+D     T   +I+ V+G  E    S+      L  A + I  +  +Q + ++ 
Sbjct: 169 QMKQADMDLMVGATKD-NIMMVEG--EMKEVSELDLINALKAAHEAIKPMCAVQDE-LNK 224

Query: 241 EV 242
           E+
Sbjct: 225 EL 226



 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 88/250 (35%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57
           RL GR+ +++R I           GS +   G+T  L+T TL  K+   +     +  + 
Sbjct: 325 RLDGRRTDEIRPIWCEVSPLPMPHGSAIFTRGETQSLSTCTLGTKLDEKMVDDVLDKSYQ 384

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  R L+  +         + +   
Sbjct: 385 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRGLKGQLPDDF--PYTVRLVSQ 438

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D    M             K  V+ I+ G++        
Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVSGIAMGLIKNPGEDKY 485

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G +   Q   +    S +     L  AK     ++
Sbjct: 486 AVLSDILGDEDHLGDMDFKTTGTRDG-LTATQMDIKCDGLSFEILEKALLQAKAGREHIL 544

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 545 NKMLETIAEP 554


>gi|67459113|ref|YP_246737.1| polynucleotide phosphorylase/polyadenylase [Rickettsia felis
           URRWXCal2]
 gi|75536454|sp|Q4ULK1|PNP_RICFE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|67004646|gb|AAY61572.1| Polyribonucleotide nucleotidyltransferase [Rickettsia felis
           URRWXCal2]
          Length = 747

 Score = 98.6 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 90/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R+I+    +   A GS L   G+T  L + T    +   I ++  G    
Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S    +  +A S R+ G      ++  RA+  ++         I +  +
Sbjct: 376 RFMLNYIFPPYSVNEAMPMKAPSRREVGHG----KLAWRAINPILPNKVQFPYSIRVVAE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
             +++G +  A + G+ +AL                   +K  VA I+ G++        
Sbjct: 432 TTESNGSSSMATVCGSSLALMYAGV-------------PIKAPVAGIAMGLVKEGKKFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   + +          L  A+     +++ 
Sbjct: 479 LSDILGDEDYFGDMDFKVAGTSEG-ITALQMDIKISGVDFKIMTVALEQARLGRLHILEQ 537

Query: 234 QKDVISNE 241
              VIS  
Sbjct: 538 MNKVISKP 545



 Score = 82.4 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 33/229 (14%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST----GNRVK 75
           +++ A+G+  VK G++ LL TA + +K            +T  Y  +  +T    G   K
Sbjct: 23  IARQADGAVTVKMGNSVLLCTAVVAKKA---KEGIGFFPLTINYREMAYATGKIPGGFFK 79

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--RTAAITGA 133
           RE   G+   R   + R+I R +R +   + +      + C V+  D  T     AI GA
Sbjct: 80  RE---GKASDREVLVSRLIDRPIRPLFHPAFVNET--HVTCSVLSYDPETPVDILAIIGA 134

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
             AL                       VAA   G++ G  +++       T  +D     
Sbjct: 135 SAALS-------------LSPAPYLEIVAASKVGLINGEFVLNPTLELLKTSQLDLVVAG 181

Query: 194 T-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           T DS  +VE    +E    +++     +    +    +IK+ K+ ++ E
Sbjct: 182 TSDSVMMVE----SEAHLLAEEQMLEAVKFGFESFQPVIKIIKE-LAEE 225


>gi|57234211|ref|YP_181693.1| polynucleotide phosphorylase/polyadenylase [Dehalococcoides
           ethenogenes 195]
 gi|123759700|sp|Q3Z7V6|PNP_DEHE1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|57224659|gb|AAW39716.1| polyribonucleotide nucleotidyltransferase [Dehalococcoides
           ethenogenes 195]
          Length = 720

 Score = 98.6 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 94/250 (37%), Gaps = 27/250 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R++GR   Q+R++     +     GS L   GDT ++   TL    E +    +     
Sbjct: 311 IRVNGRGIKQLRQLDAETGILPRVHGSALFTRGDTQVMAITTLGSLQEAQQLDGLSAEDT 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +    SG  G R      +  RAL  V+         I +  
Sbjct: 371 KRFMLHYNFAPFSTGEVKR----SGSPGRREIGHGALAERALVPVLPTPEEFPYTIRMVA 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
           DV+ + G T   ++  + ++L D                 +K  VA IS G++ G     
Sbjct: 427 DVVGSSGSTSMGSVCSSSLSLMDAGV-------------PVKKAVAGISIGLITGENDTY 473

Query: 174 --IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             I D++  ED+  D+D     T  G I  +Q   +    S D     +  AK+    ++
Sbjct: 474 CTITDIEGIEDNYGDMDFKVAGTRDG-ITAIQVDMKVKGISFDVIRDAIYQAKEARYTIL 532

Query: 232 KLQKDVISNE 241
           ++    ++  
Sbjct: 533 EVMDKALAQP 542



 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 78/230 (33%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLL---TTAT-LEEKVPMWIRNTKHGWITAEYGML 66
           R++++        A+ +  +++ DT LL     A    E V        +       G +
Sbjct: 14  RKLTIESGKMARLADAAVTIRYADTELLVTLCAAKKPREGVDFLPLTIDYEERMYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  ++RE   GR   ++    R+  R LR ++        QIII       +    
Sbjct: 74  P---GGFIRRE---GRPSEQAILAGRLTDRPLRPLLPKEWRNELQIIITVIASDKENDAD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              + GA   L       E             G V A   G   G  +++  + +     
Sbjct: 128 IWGVVGASTVLTMSQIPYE-------------GPVGASRVGYTNGEFVLNPTFAQLEQSQ 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D   V T    +V ++  ++     +D     +  A     +LI LQ +
Sbjct: 175 MDLVVVSTRKA-VVMIEAGSKEIP--EDLMIKAIEFAHQANQELIDLQDE 221


>gi|256370772|ref|YP_003108597.1| putative polyribonucleotide nucleotidyltransferase [Candidatus
           Sulcia muelleri SMDSEM]
 gi|256009564|gb|ACU52924.1| putative polyribonucleotide nucleotidyltransferase [Candidatus
           Sulcia muelleri SMDSEM]
          Length = 691

 Score = 98.6 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 82/214 (38%), Gaps = 30/214 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           RL GR  + +R+I           GS +   G+T  L+T TL   + +   +        
Sbjct: 319 RLDGRSLDDLRKIWSQTNFLPSVHGSAIFSRGETQALSTVTLGSSLDVNKIDNVILQDQQ 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG     + +S R+ G       +  RAL++++         I +  D
Sbjct: 379 KFYLHYNFPPFSTGEIKLLKGISRREIGHG----NLAQRALKNIIPFKT--PYTIRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
           +++++G +  A +  + +AL D                 +K  V+ IS G++  +     
Sbjct: 433 ILESNGSSSMATVCASTLALMDAGI-------------PIKRPVSGISMGLIINFLTDEA 479

Query: 174 --IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
             + D+   ED+  D+D     T  G I   Q  
Sbjct: 480 IILSDILGDEDNIGDMDFKMTGTKFG-ITACQMD 512



 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 85/247 (34%), Gaps = 39/247 (15%)

Query: 10  QMRE----------ISLTRRVSK-YAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNT 54
           ++R+          IS+        A G+ +V+ G T L+ T  +    +E +       
Sbjct: 4   ELRKENIFLEDGQIISIETGKLACQANGTAVVRMGKTSLIATIVISKKEKEGINFLPLII 63

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
            +      Y    +  G  +KRE    R         R+I R LR +   + L   QIII
Sbjct: 64  DYKE---NYSAGGKIPGGFIKRE---RRPSDEEVLTMRLIDRLLRPLFPQNFLKEIQIII 117

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
              ++  D              L D L  +   +         KG V+A+         +
Sbjct: 118 Y--LLSYDRNV-----------LPDGLAGLVASAAVSISGIPFKGPVSAVRIIRFKNSFL 164

Query: 175 VDLDYGEDSTIDVDANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           ++      S    D N ++      I+ ++G  E    S++     + +A   I   I  
Sbjct: 165 INPGIK--SVKKSDINLIIGGTKNSILMIEG--EMKEISENEIIYFIKIAHFFIKLQITA 220

Query: 234 QKDVISN 240
           Q ++I N
Sbjct: 221 QINLIKN 227


>gi|224089018|ref|XP_002308603.1| predicted protein [Populus trichocarpa]
 gi|222854579|gb|EEE92126.1| predicted protein [Populus trichocarpa]
          Length = 243

 Score = 98.6 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 77/214 (35%), Gaps = 25/214 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R +S +  V   A GS     GDT +       +       N +   +  
Sbjct: 5   RDDGRSPSQLRPLSCSHNVLHRAHGSASWSQGDTKVSAAVYGPKAGTKKNENPEKACVEV 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            +                +G+ G   +E + ++ R L+S+  L+   +    I    +  
Sbjct: 65  IWK-------------PKTGQIGKLEREYEMILKRTLQSICILTLNPNTTTSIIVQFVND 111

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DG     AI  A  AL D    M+  +            VA   C    GY I+D    E
Sbjct: 112 DGALLVCAINAACAALVDARIPMKHLA------------VAICCCLADVGYVILDPTKLE 159

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
           +  +   A  V  +S   V ++GS+     S +H
Sbjct: 160 EQKMKGFAYLVFPNSVLSVLLEGSSLVEGESTEH 193


>gi|7716531|gb|AAF68421.1|AF237935_1 polynucleotide phosphorylase [Pasteurella multocida]
          Length = 684

 Score = 98.6 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 93/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +    I +   G    
Sbjct: 287 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERSD 346

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 347 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPTLAEFPYVVRVVSE 402

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 403 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDEKFVV 449

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    + +     LN AK     ++ +
Sbjct: 450 LSDILGDEDHLGDMDFKVAGTRTG-VTALQMDIKIEGITAEIMQIALNQAKSARLHILGV 508

Query: 234 QKDVI 238
            +  I
Sbjct: 509 MEQAI 513



 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 64/207 (30%), Gaps = 26/207 (12%)

Query: 34  DTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQE 89
           DT +  T      ++E    +     +   T   G +P   G   KRE   GR       
Sbjct: 6   DTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGRIP---GGFFKRE---GRPSEGETL 59

Query: 90  IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN 149
           I R+I R +R +         QI+     +         A+ GA  AL            
Sbjct: 60  IARLIDRPIRPLFPEGFYNEIQIVATVVSVNPQICPDLVAMIGASAALS----------- 108

Query: 150 KFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERA 209
                    G + A   G +    +++    E     +D     TD   ++     +E  
Sbjct: 109 --LSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRLDLVVAGTDKAVLMV---ESEAD 163

Query: 210 TFSQDHFFAMLNLAKDRIADLIKLQKD 236
             +++   A +     +   +I   K+
Sbjct: 164 VLTEEQMLAAVVFGHQQQQVVIDAIKE 190


>gi|41614907|ref|NP_963405.1| exosome complex RNA-binding protein Rrp42 [Nanoarchaeum equitans
           Kin4-M]
 gi|40068631|gb|AAR38966.1| NEQ111 [Nanoarchaeum equitans Kin4-M]
          Length = 218

 Score = 98.6 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 82/230 (35%), Gaps = 41/230 (17%)

Query: 3   LSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE 62
           +  R   + R I +    ++       +  G+T ++   ++ E+ PM         +   
Sbjct: 14  IDNRPLLEYRPIKIKEDQNR-----VWLSLGNTQVIAGLSISEEEPM---EKGKANLIVN 65

Query: 63  YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS---------VVDLSALGSRQII 113
               P +      +E   G    +   + R+I RALRS         V+D + +  +   
Sbjct: 66  ADFSPIA-----GKEYFQGPPTEQDLILARLIDRALRSSNAIALEKHVIDENKV--KSFY 118

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           ID  V++ DG    A++          +  + + +N  +   +       IS        
Sbjct: 119 IDVIVLEDDGNILDASML--------AVVKLLEKANLLERKPLY------ISFYKYKNII 164

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
            VD    E+   +   +  +    +IV +Q      +F ++    +++LA
Sbjct: 165 FVDPTKEEEQISNAKISIAIDGE-NIVSIQKD--YGSFDENEIEELIDLA 211


>gi|325268379|ref|ZP_08135011.1| polyribonucleotide nucleotidyltransferase [Prevotella multiformis
           DSM 16608]
 gi|324989233|gb|EGC21184.1| polyribonucleotide nucleotidyltransferase [Prevotella multiformis
           DSM 16608]
          Length = 751

 Score = 98.6 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           R+ GR  +++R I           GS L + G+T  L+T TL  K+   + +      + 
Sbjct: 325 RMDGRATDEIRPIWCEVDTLPMPHGSALFQRGETMSLSTCTLGTKMDEKMIDNVLEKSYQ 384

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P  TG    +  V  R+ G       +  RAL+  +         + +   
Sbjct: 385 RFLLHYNFPPFCTGEAKAQRGVGRREIGHGH----LAWRALKGQIPADF--PYTVRLVSQ 438

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D    M             K  V+ I+ G++        
Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVSGIAMGLIKNPGEDKY 485

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G +   Q   +    S +     L  AK     ++
Sbjct: 486 AVLSDILGDEDHLGDMDFKTTGTRDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHIL 544

Query: 232 KLQKDVISNE 241
            L  D I+  
Sbjct: 545 NLLTDTIAEP 554



 Score = 95.5 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 85/236 (36%), Gaps = 27/236 (11%)

Query: 3   LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       IS+    V+K A+G+ +++ G+T LL T    +E VP            
Sbjct: 11  PDGRT------ISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYR 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y    R  G   KRE   G+         R++ R LR +          + +   ++ 
Sbjct: 65  EQYSAAGRYPGGFTKRE---GKANDDEILTSRLVDRVLRPLFPSDYHCE--VYVQVMLLS 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD            V   D L      +        ++   + +    + G  ++D  + 
Sbjct: 120 AD-----------SVDQPDALAGFAASAALAASDIPIEHPTSEVRVARINGEYVIDPTFE 168

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +    D+D     T   +I+ V+G  E    S+      L  A + I  + ++Q++
Sbjct: 169 QMKEADMDLMVGATKD-NIMMVEG--EMDEVSEQDLIGALKAAHEAIKPMCEMQEE 221


>gi|317029576|ref|XP_001391907.2| exosome complex endonuclease 1 [Aspergillus niger CBS 513.88]
          Length = 269

 Score = 98.6 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 85/260 (32%), Gaps = 28/260 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-----WIRNTK 55
           +RL GR+ N++R +      +  + GS  +  G+T +L +     +            + 
Sbjct: 14  LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTAILCSVHGPAEGRRGDATGGAAGSA 73

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
              +  +  +   +  +R +R   S +Q  R   +  ++  A +S +         I I 
Sbjct: 74  GAVVEVDVNVAGFAGVDRKRRAGGSDKQSSR---VATILRSAFQSHLHTHLYPHSTISIH 130

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDC---------SNKFQLSQVLKGHVAAISC 166
             V+ +DG    AA+    +AL D    M             +           +  +  
Sbjct: 131 VSVLSSDGSLLAAAVNACTLALVDAGIPMPGLLCGCTSGMSGSASTPRDPNNDTLDPLLD 190

Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVE------VQGSAERATFSQDHFFAML 220
             L      +L +    T+       + ++  I E      V      +     +   ML
Sbjct: 191 LSLPEEQ--ELPFL---TVGTTTAVPVGEAAMINEDEDEMKVAMLTMDSKVHCTYVETML 245

Query: 221 NLAKDRIADLIKLQKDVISN 240
            +  D    + ++ + VI  
Sbjct: 246 AVGIDGCKQIREILEGVIKK 265


>gi|224023647|ref|ZP_03642013.1| hypothetical protein BACCOPRO_00354 [Bacteroides coprophilus DSM
           18228]
 gi|224016869|gb|EEF74881.1| hypothetical protein BACCOPRO_00354 [Bacteroides coprophilus DSM
           18228]
          Length = 719

 Score = 98.6 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 87/250 (34%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57
           RL GR    +R I           GS +   G+T  L+T TL  K+   I     +    
Sbjct: 319 RLDGRATTDIRPIWCEVSPLPGPHGSSIFTRGETQSLSTVTLGTKLDEKIVDDVLDQHKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +  +      + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKGQIPEN--YPYCVRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGV-------------PIKKPVSGIAMGLIKNAGEDKY 479

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    + D     L  AK     ++
Sbjct: 480 AVLSDILGDEDHLGDMDFKVTGTRDG-ITATQMDIKCDGLTYDILEKALLQAKQGREYIL 538

Query: 232 KLQKDVISNE 241
               + I+  
Sbjct: 539 GKLTECIAEP 548



 Score = 85.5 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 87/231 (37%), Gaps = 21/231 (9%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWITAEYGMLPRS 69
           R I+L      K A+G+ +++ G+T LL T    ++ VP             +Y    R 
Sbjct: 15  RTITLETGKLAKQADGAVMLRMGNTMLLATVCAAKDAVPGTDFMPLQVEYREKYSAFGRF 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   KRE   G+         R++ RALR +   +     ++ ++  +  ADG      
Sbjct: 75  PGGFTKRE---GKASDYEILTCRLVDRALRPLFPDN--YHAEVYVNIILFSADG------ 123

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
                V + D L  +   +          G ++ +    + G  +++  +      D+D 
Sbjct: 124 -----VDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGQFVINPTFEALERADMDI 178

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
               T   +I+ V+G  E    S+    A +  A + I    K Q +++  
Sbjct: 179 MVAATYE-NIMMVEG--EMKEVSEQDLLAAMKFAHEAIKVHCKAQMELMEE 226


>gi|91079418|ref|XP_967497.1| PREDICTED: similar to exosome complex exonuclease rrp42 (ribosomal
           RNA processing protein 42 [Tribolium castaneum]
 gi|270003471|gb|EEZ99918.1| hypothetical protein TcasGA2_TC002710 [Tribolium castaneum]
          Length = 285

 Score = 98.6 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 85/262 (32%), Gaps = 30/262 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR+    R I L   +  +A GS  ++  +T +L    +E  VP +    K G + 
Sbjct: 19  FRVDGREREDYRPIELETNIVSHAFGSARLRLANTDVLVAVKIEVDVP-YPERPKEGKLE 77

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQI 112
                   +T +   R          + EI   +  A +S  V DL+ L         +I
Sbjct: 78  FFVDCSANATPDFEGRGGED-----LAIEISNSLSAAYKSPEVFDLTKLCILKGHKCWKI 132

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHM----------EDCSNKFQLSQVLKGHVA 162
            +D  +++  G    A       AL D    +           D     +L    K  V 
Sbjct: 133 FVDILLLECGGNLYDAVSIAVKAALWDTRIPLVKSVTVDGNNVDMEVSDELHDCQKLDVT 192

Query: 163 A----ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
           A    ++   +    IVD +  E+          ++       +Q  +   +        
Sbjct: 193 AAPIMVTVCKIGEQCIVDPNVAEELCSVGAVVIAVSKDKFSTVLQIGS--GSLHPQTLLE 250

Query: 219 MLNLAKDRIADLIKLQKDVISN 240
            L + +     L +   + +S 
Sbjct: 251 CLQMGEKVAQRLSEALTETLSE 272


>gi|323126485|gb|ADX23782.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 710

 Score = 98.6 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 87/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLAPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +  A   R+ G       +  RAL  V+         I +  
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + A  +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILD 538

Query: 233 LQKDVISNE 241
           + ++ I+  
Sbjct: 539 VIEETIAEP 547



 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 86/231 (37%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
            + +    V+K A G+ +V++G++ +LT A + +K      +     +       G  P 
Sbjct: 14  PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR    +    R+I R +R +         Q+I        +     A
Sbjct: 73  --GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +  G + G  I++ D  +     ++
Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                +    I  V+  A+    S+D     L      I +LI  Q+ +++
Sbjct: 175 LTVAGSKEA-INMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 222


>gi|25010273|ref|NP_734668.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           agalactiae NEM316]
 gi|77413798|ref|ZP_00789978.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           515]
 gi|81457782|sp|Q8E7F6|PNP_STRA3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|23094625|emb|CAD45843.1| polynucleotide phosphorylase, alpha chain [Streptococcus agalactiae
           NEM316]
 gi|77160160|gb|EAO71291.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           515]
          Length = 709

 Score = 98.6 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 84/249 (33%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRRVDEIRPLDAVIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEAQIIDGLTPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +  A   R+ G       +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEALAQAKKARFEILD 538

Query: 233 LQKDVISNE 241
           +    I+  
Sbjct: 539 VLHGAIAEP 547



 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 26/230 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
           ++ +    V+K A GS +V++GD+ +LT A + +K      +     +       G  P 
Sbjct: 14  KLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR    +    R+I R +R +         Q+I        +     A
Sbjct: 73  --GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDENASAPMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +    + G  I++    E     ++
Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                T    I  V+  A+    S++     L    + + +LI  Q++++
Sbjct: 175 LTVAGTKEA-INMVESGAKE--LSEEIMLEALLKGHEAVCELIAFQEEIV 221


>gi|56118510|ref|NP_001007919.1| exosome component 8 [Xenopus (Silurana) tropicalis]
 gi|51513372|gb|AAH80360.1| exosc8 protein [Xenopus (Silurana) tropicalis]
 gi|89269528|emb|CAJ82996.1| exosome component 8 [Xenopus (Silurana) tropicalis]
          Length = 276

 Score = 98.6 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 87/256 (33%), Gaps = 23/256 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+  +L     E   P        G++  
Sbjct: 23  RPDGRELTEFRTTTINVGSITTADGSALVKLGNCTVLCGVKAEFTAPP-ADAPNKGYVVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGG-RSQEIQRMIGRALRSVVDLSAL----GSRQIIIDC 116
              + P  +     R    G +    SQ I  +I  +   ++    L    G    ++ C
Sbjct: 82  NVDLTPLCSSQF--RPGPPGEEAQVASQFIADVIDNS--QMLLKEDLCIAHGKLAWVLYC 137

Query: 117 DV--IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS----------QVLKGHVAAI 164
           D+  +  DG      +     AL +        + +  L+          ++LK  VA  
Sbjct: 138 DLICLDYDGNLLDTCMCALVAALQNVRLPSVKINEETGLAEVNLKTKHALKILKHPVATS 197

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
                  + +VD    E+         V  +   +   +     +  + +     ++ A 
Sbjct: 198 FAVFDDTFLLVDPTGEEEGLASGLLTVVTDEDERLCATRKPG-GSALAAEKLQECISRAI 256

Query: 225 DRIADLIKLQKDVISN 240
            R  ++  L ++ +++
Sbjct: 257 TRHKEVTNLLQEALAS 272


>gi|156400116|ref|XP_001638846.1| predicted protein [Nematostella vectensis]
 gi|156225970|gb|EDO46783.1| predicted protein [Nematostella vectensis]
          Length = 710

 Score = 98.6 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 77/228 (33%), Gaps = 15/228 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GRQ +++R I     + K   GS L K G+T + +TAT          + +   +  
Sbjct: 305 RCDGRQFDELRSIDCDINLYKTLHGSSLFKRGETQVFSTATFGSVGSAAKVDTISEAVGG 364

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
           +K       Y   P ST    +R    G    R      +  RAL  V+         + 
Sbjct: 365 SKEKQFMLHYEFPPFSTNEVKQR---RGSFDRREIGHGALAERALVPVLPDEL--PFTLR 419

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-Y 172
           +  +V+ ++G +  A+     +A+ D    ++          V        S   +    
Sbjct: 420 LTAEVLGSNGSSSLASACAGSLAMMDAGVPIKSHVAGSACGLVTSSDAEDASKRDIDNYQ 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
            + D+   ED   D+D     T  G I  +Q   +            +
Sbjct: 480 LLTDILGIEDYLGDMDFKIAGTRQG-ITALQADFKVPGLPVAIVEEAI 526



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 85/231 (36%), Gaps = 30/231 (12%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R++  +       A+GS + ++ DT +L TA       +         +    +   ++P
Sbjct: 2   RQLKFSTGKLALLADGSTVTQYEDTSVLVTAISSKKPSENSFLPLVVDYKEKASAACLIP 61

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125
                 ++R+ ++     R   + R I R++RS+         QII    ++ AD     
Sbjct: 62  ---TTFLRRDLLA---NEREILVCRRIDRSVRSLFMKGYTYDTQII--SHLLAADRFNNP 113

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              A+ GA  +L                S   +G V A+  G + G  +V+    +    
Sbjct: 114 DVVAVNGASASLA-------------LSSIPWRGPVGAVRIGDVDGQLVVNPLRQQLEHS 160

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            +D   V +    IV V+G A+      +     + LA      +I+  K+
Sbjct: 161 QLDL-VVTSSESKIVMVEGFAKEVP--DERLCEAIKLAFSEAQPIIQAIKE 208


>gi|313895740|ref|ZP_07829296.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312975866|gb|EFR41325.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 635

 Score = 98.6 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 93/250 (37%), Gaps = 28/250 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-----LEEKVPMWIRNTK 55
           +R  GR  N++R +S    +     GS L   G T +L T T      +E++   +    
Sbjct: 255 IRPDGRALNEVRPVSCEVGILPRTHGSGLFTRGQTQVL-TVTTLGSIGDEQIIDGLGPET 313

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G      +   R+ G       +  RAL  ++         I + 
Sbjct: 314 TKHYLHHYNFPGYSVGEARPMRSPGRREIGHG----ALAERALFPMIPSIEDFPYTIRLV 369

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            ++++++G +   ++ G+ ++L                   +K  V+ ++ G++      
Sbjct: 370 SEILESNGSSSMGSVCGSTLSLMCAGV-------------PIKRPVSGVAMGLVRDGDDY 416

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED+  D+D     T  G I  +Q   + A  ++D   + L  AK+  A ++
Sbjct: 417 SILTDIQGMEDALGDMDFKVAGTAKG-ITAIQMDIKIAGITRDILASALAQAKEGRAFIL 475

Query: 232 KLQKDVISNE 241
               + I   
Sbjct: 476 DKMLECIDKP 485



 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 19/165 (11%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G  +KRE   GR    +    R+I R +R +         QI+     +  D     AA+
Sbjct: 17  GGFIKRE---GRPSNDAVLCARLIDRPIRPLFPEGFRNDVQIVATVLSVDQDNPPEIAAM 73

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA  AL                     G +A +  G + G  +++    E+     + N
Sbjct: 74  LGASCAL-------------TVSDIPFMGPIAGVRVGYVNGAFVINP--KEEERAVSELN 118

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
             +  S   V +  +      S++     +      I  L++ QK
Sbjct: 119 LTVAGSYDAVMMVEAG-ANELSEEIVLDAILFGHAEIRRLVEFQK 162


>gi|260913802|ref|ZP_05920277.1| polyribonucleotide nucleotidyltransferase [Pasteurella dagmatis
           ATCC 43325]
 gi|260632115|gb|EEX50291.1| polyribonucleotide nucleotidyltransferase [Pasteurella dagmatis
           ATCC 43325]
          Length = 666

 Score = 98.6 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 92/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR  + +R + +   V     GS +   G+T  L  ATL  +    I +   G    
Sbjct: 269 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERSD 328

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+   A     + +  +
Sbjct: 329 HFLFHYNFPPYSVGETGMIGSPKRREIGHG----RLAKRGVAAVMPTLAEFPYVVRVVSE 384

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +AL D                 +K  VA I+ G++        
Sbjct: 385 ITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEDEKFVV 431

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +    + +     LN AK     ++ +
Sbjct: 432 LSDILGDEDHLGDMDFKVAGTRQG-VTALQMDIKIEGITAEIMQIALNQAKSARLHILGV 490

Query: 234 QKDVI 238
            +  I
Sbjct: 491 MEQAI 495



 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 60/192 (31%), Gaps = 22/192 (11%)

Query: 45  EKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDL 104
           E    +     +   T   G +P   G   KRE   GR       I R+I R +R +   
Sbjct: 3   EGQDFFPLTVNYQERTYAAGRIP---GGFFKRE---GRPSEGETLIARLIDRPIRPLFPE 56

Query: 105 SALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
                 QI+     +         A+ GA  AL                     G + A 
Sbjct: 57  GFYNEIQIVATVVSVNPQICPDLVAMIGASAALS-------------LSGVPFNGPIGAA 103

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
             G +    +++    E     +D     TD   ++     +E    +++   A +    
Sbjct: 104 RVGFIDNQFVLNPTMNEQKQSRLDLVVAGTDKAVLMV---ESEADVLTEEQMLAAVVFGH 160

Query: 225 DRIADLIKLQKD 236
           ++   +I+  K+
Sbjct: 161 EQQQVVIEAIKE 172


>gi|153008079|ref|YP_001369294.1| polynucleotide phosphorylase/polyadenylase [Ochrobactrum anthropi
           ATCC 49188]
 gi|187610317|sp|A6WWW1|PNP_OCHA4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|151559967|gb|ABS13465.1| Polyribonucleotide nucleotidyltransferase [Ochrobactrum anthropi
           ATCC 49188]
          Length = 713

 Score = 98.6 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 18/243 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     +     GS L   G+T  +  ATL       + +   G    
Sbjct: 317 RIDGRDLKTVRAIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G      ++  RA+  ++  +      I    +
Sbjct: 377 SFMLHYNFPPYSVGETGRMGSPGRREVGHG----KLAWRAIHPMLPAADQFPYTIRSVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A + G  +AL D    +        +  + +G   A+         + D+
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAV---------LSDI 483

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED   D+D     TD+G I  +Q   +    +++     L  AK     ++      
Sbjct: 484 LGDEDHLGDMDFKVAGTDNG-ITALQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKA 542

Query: 238 ISN 240
           +S 
Sbjct: 543 LST 545



 Score = 88.6 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 77/229 (33%), Gaps = 31/229 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R ++L    +++ A+G+ L  +G+T +L T       +     +     +   T   G +
Sbjct: 14  RPLTLETGKIARQADGAVLATYGETVVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR       + R+I R +R +         Q+++   V+Q D    
Sbjct: 74  P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFVEGYKNDTQVVLT--VVQHDLENN 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++  A  AL                     G +     G + G  +++ +  E   
Sbjct: 126 PDVLSMVAASAAL-------------TISGVPFMGPIGGARVGYINGEYVLNPNIDEMPE 172

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
             +D     T    ++     +E    S++     +   +     +I  
Sbjct: 173 SKLDLVVAGTADAVLMV---ESEAQELSEEVMLGAVVFGQKGFQPVIDA 218


>gi|262281984|ref|ZP_06059753.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp.
           2_1_36FAA]
 gi|262262438|gb|EEY81135.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp.
           2_1_36FAA]
          Length = 668

 Score = 98.6 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 253 VRPDGRKVDEIRPLDAEVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 312

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 313 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRLVA 368

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGY 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 369 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISYGSNYT 415

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 416 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILTEALAQAKKARFEILD 474

Query: 233 LQKDVI 238
           L +  I
Sbjct: 475 LIEATI 480



 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 60/169 (35%), Gaps = 19/169 (11%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KRE   GR    +    R+I R +R +         Q+I        D   + AA+
Sbjct: 9   GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASPQMAAM 65

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            G+ +AL                     G +A +  G + G  I++    +     ++  
Sbjct: 66  FGSSLALS-------------ISDIPFNGPIAGVQVGYVDGEFIINPSKEQKEVSLLELT 112

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
              T    I  V+  A+    S+D     L      + +LI  Q+++++
Sbjct: 113 VAGTKEA-INMVESGAKE--LSEDIMLEALLKGHQAVKELIAFQEEIVA 158


>gi|294675265|ref|YP_003575881.1| polyribonucleotide nucleotidyltransferase [Prevotella ruminicola
           23]
 gi|294472822|gb|ADE82211.1| polyribonucleotide nucleotidyltransferase [Prevotella ruminicola
           23]
          Length = 792

 Score = 98.6 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 89/251 (35%), Gaps = 30/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KH 56
           +RL GR+ +++R I           GS +   G+T  L+T TL  K+   + +      +
Sbjct: 323 IRLDGRKTDEIRPIWCEVSPLPMPHGSSIFTRGETQSLSTCTLGTKLDEKMVDDVLEHGY 382

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P  TG    +  V  R+ G       +  R L+  +         + +  
Sbjct: 383 QRFLLHYNFPPFCTGEAKAQRGVGRREIGHGH----LAWRGLKGQIPEDF--PYTVRLVS 436

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171
            +++++G +  A +    +AL D    M             K  V+ I+ G++       
Sbjct: 437 QILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVSGIAMGLIKNPGEDK 483

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G +   Q   +    S D     L  AK     +
Sbjct: 484 YAVLSDILGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFDILEKALMQAKAGREHI 542

Query: 231 IKLQKDVISNE 241
           +K   D I+  
Sbjct: 543 LKCLTDTIAEP 553



 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 89/233 (38%), Gaps = 22/233 (9%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWITAEYGMLPRS 69
           R I++    V+K  +GS +++  +T LL T    ++ VP             +Y    R 
Sbjct: 14  RTITIETGKVAKQTDGSVVLRMNNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGRF 73

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   KRE   G+         R++ R LR +   +     ++ ++  ++ ADG      
Sbjct: 74  PGGFTKRE---GKASDNEILTSRLVDRVLRPLFPSN--YHAEVFVNVMLLSADG------ 122

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
                +   D L      +         +  ++ +    + G  ++D  + +    D+D 
Sbjct: 123 -----IDQPDALAGFAASAALACSDIPFECPISEVRVARVNGEYVIDPTFEQMKNADMDI 177

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
             V   + +I+ V+G  E    S+      L  A   I  + +LQ + +S E+
Sbjct: 178 -MVGASAENIMMVEG--EMKEVSEQDMIGALKAAMAAIKPMCELQAE-LSKEL 226


>gi|57087309|ref|XP_546833.1| PREDICTED: similar to homolog of yeast mRNA transport regulator 3
           [Canis familiaris]
          Length = 272

 Score = 98.6 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 81/246 (32%), Gaps = 30/246 (12%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---------- 55
           R   ++R +     +   A+GS  ++ G T +L   +   +     R             
Sbjct: 31  RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGSERGGGPAGAGGEAPA 90

Query: 56  --HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
              G +  ++   P +     +R A  G  GG  +E+   +  AL   V L      Q+ 
Sbjct: 91  ALRGRLLCDFRRAPFAG---RRRRAPPG--GGEERELALALQEALEPAVRLGRYPRAQLE 145

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +   +++  G    AA+T A +AL D    M D      LS+  +               
Sbjct: 146 VSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSRTPEPAP----------TW 195

Query: 174 IVDLDYGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++D    E+           M     +  + GS E      + +   + L  +    L  
Sbjct: 196 LLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGP--PESWAEAVRLGLEGCQRLYP 253

Query: 233 LQKDVI 238
           + +  +
Sbjct: 254 VLQQCL 259


>gi|71901372|ref|ZP_00683466.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
           Ann-1]
 gi|71728871|gb|EAO31008.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
           Ann-1]
          Length = 469

 Score = 98.6 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 89/247 (36%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R+ GR    +R I++   V     GS L   G+T  +   TL       + +   G   
Sbjct: 84  VRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQVIDAVTGEYK 143

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +      R+ G      R+  R + +V+         I +  
Sbjct: 144 ENFLFHYNFPPYSVGECGRFGVQKRREIGHG----RLARRGVLAVMPSLDEFPYTIRVVS 199

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G+ +AL D                 +K  VA I+ G++       
Sbjct: 200 EITESNGSSSMASVCGSSLALMDAGV-------------PVKAPVAGIAMGLVKEGERFV 246

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G +  +Q   +    +++     L  AK     ++ 
Sbjct: 247 VLSDILGDEDHLGDMDFKVAGTSEG-VSALQMDIKIEGITEEIMRQALQQAKVGRLHILG 305

Query: 233 LQKDVIS 239
                ++
Sbjct: 306 EMDKALA 312


>gi|157964552|ref|YP_001499376.1| polynucleotide phosphorylase/polyadenylase [Rickettsia massiliae
           MTU5]
 gi|187611281|sp|A8F1P3|PNP_RICM5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157844328|gb|ABV84829.1| Polyribonucleotide nucleotidyltransferase [Rickettsia massiliae
           MTU5]
          Length = 745

 Score = 98.6 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 89/248 (35%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R+I+    +   A GS L   G+T  L + T    +   I ++  G    
Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S    +  +  S R+ G      ++  RA+  ++         I +  +
Sbjct: 376 RFMLNYIFPPYSVNEAMPMKVPSRREVGHG----KLAWRAINPILPNKVQFPYSIRVVAE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
             +++G +  A + G+ +AL                   +K  VA I+ G++        
Sbjct: 432 TTESNGSSSMATVCGSSLALMYAGV-------------PIKAPVAGIAMGLVKEGKKFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   + +          L  A+     +++ 
Sbjct: 479 LSDILGDEDYFGDMDFKVAGTSEG-ITALQMDIKISGVDFKIMKVALEQARLGRLHILEQ 537

Query: 234 QKDVISNE 241
              VIS  
Sbjct: 538 MNKVISKP 545



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 88/229 (38%), Gaps = 33/229 (14%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           +++ A+G+  VK G++ LL T  +    +E +  +     +  +    G +P   G   K
Sbjct: 23  IARQADGAVTVKMGNSVLLCTVVVANKAKEGIGFFPLTINYREMAYAAGKIP---GGFFK 79

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG--TRTAAITGA 133
           RE   G+   R   + R+I R +R +   + +      + C V+  D        AI GA
Sbjct: 80  RE---GKASDREVLVSRLIDRPIRPLFHPAFVNET--HVTCSVLSYDPEIPVDILAIIGA 134

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
             AL                       VAA   G++ G  +++       T  +D     
Sbjct: 135 SAALS-------------LSPAPYLEMVAASKVGLINGEFVLNPTLELLKTSQLDLVVAG 181

Query: 194 T-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           T DS  +VE    +E    S++     +    +    +IK+ K+ ++ E
Sbjct: 182 TSDSVMMVE----SEAHLLSEEQMLEAVKFGFESFQPVIKIIKE-LAEE 225


>gi|257066122|ref|YP_003152378.1| Polyribonucleotide nucleotidyltransferase [Anaerococcus prevotii
           DSM 20548]
 gi|256798002|gb|ACV28657.1| Polyribonucleotide nucleotidyltransferase [Anaerococcus prevotii
           DSM 20548]
          Length = 711

 Score = 98.6 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 90/250 (36%), Gaps = 27/250 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTK 55
           +R  GR   ++R +S    +     GS L + G T +L+  TL     + I     R   
Sbjct: 311 IRPDGRDLTEIRPLSAEAGLLPRVHGSGLFQRGQTQVLSVVTLGSPADVQIIDGLNREEI 370

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                 +Y   P   G+         R+ G      R+  RAL  V+         I + 
Sbjct: 371 QKRYIHQYNFPPFCVGDVRPLRGPGRREIGHG----RLAERALLPVLPDEKDFPYTIRVV 426

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            +V+ ++G +  A+I G+ ++L D                 +   VA I+ G++      
Sbjct: 427 SEVLSSNGSSSQASICGSTLSLMDAGV-------------PITKPVAGIAMGLIKEDDSI 473

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I  +Q   +    +++     LN A      ++
Sbjct: 474 SILTDIQGLEDHLGDMDFKVAGTRDG-ITALQMDMKIDGITREVLEESLNDAHSARMRIL 532

Query: 232 KLQKDVISNE 241
            + +  I   
Sbjct: 533 DVIESAIEKP 542



 Score = 82.8 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 76/223 (34%), Gaps = 27/223 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
           +  +T    ++ A G C +K GDT LL TA       E +  +             G +P
Sbjct: 14  DFEITIGKFAEQANGECYIKSGDTSLLVTAVASEKPREGIDFFPLICDFQEKLYAVGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   G+    +  I R + R LR +   +     QII     +  D     
Sbjct: 74  ---GGFLKRE---GKASDEATLISRQMDRPLRPLFPENYYNDVQIIATVLSMDEDNLPDP 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
               GA +AL                     G V A   G +    I++ +  E     +
Sbjct: 128 LTTIGASIAL-------------GISDIPFDGPVGACMVGKVGDKLIINPNKEEREKSSL 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           +        G I  V+  A+    S+      + LA + I ++
Sbjct: 175 ELTVA-GKKGAINMVEAGAKE--ISEGEMLEAMLLALEEIGNI 214


>gi|115442662|ref|XP_001218138.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114188007|gb|EAU29707.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 268

 Score = 98.6 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 77/276 (27%), Gaps = 61/276 (22%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-----RNTK 55
           +RL GR+ N++R        +  + GS  +  G+T ++ +     +            + 
Sbjct: 14  LRLDGRRWNELRLFQAQISTNPASSGSSYLAMGNTTIMCSVHGPAEGRRGDATGGSAGSS 73

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS----ALGSRQ 111
              +  +  +   +  +R +R   S RQ  R       +   LR+               
Sbjct: 74  GAVVEVDVNVAGFAGVDRKRRAGGSDRQSSR-------VATTLRAAFQSHLHTYLYPHST 126

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDC------------------------ 147
           I I   V+ +DG    AA+    +AL D    M                           
Sbjct: 127 ISIHVSVLSSDGSLLAAAVNACTLALVDAGIPMPGLLCGCTAGMSGSASTPRDPHNDQLD 186

Query: 148 ---SNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
                     Q L       +  +  G   +D D         D    M +    V    
Sbjct: 187 PLLDLSLPEEQELPFLTVGTTSSIPVGENAMDTDEE-------DMKVTMLNMDSKV---- 235

Query: 205 SAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                     +   ML +  D    + ++ + VI  
Sbjct: 236 -------HCSYIETMLAVGIDGCKQIREIMEGVIKG 264


>gi|282899414|ref|ZP_06307381.1| 3' exoribonuclease [Cylindrospermopsis raciborskii CS-505]
 gi|281195678|gb|EFA70608.1| 3' exoribonuclease [Cylindrospermopsis raciborskii CS-505]
          Length = 718

 Score = 98.2 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 92/251 (36%), Gaps = 28/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNT 54
           +R+ GR+ +++R +S    V  +   GS L   G T +L+  TL            ++  
Sbjct: 322 VRVDGRKLDEVRPVSSQVGVLPRRVHGSGLFNRGLTQVLSACTLGTPGDAQSLSDDLQVD 381

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +       Y   P S G      A   R+ G       +  RA+  V+         I +
Sbjct: 382 QSKRYLHHYNFPPFSVGETKPLRAPGRREIGHG----ALAERAILPVLPTKEQFPYVIRV 437

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V+ ++G T   ++ G+ +AL D                 +   V+  + G++     
Sbjct: 438 VSEVLSSNGSTSMGSVCGSTLALMDAGV-------------PITKPVSGAAMGLIKEGSE 484

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     TD+G I  +Q   + +  S D     +  A+D    +
Sbjct: 485 VRVLTDIQGIEDFLGDMDFKVAGTDTG-ITALQMDMKISGLSLDVIKQAVEQARDARLHI 543

Query: 231 IKLQKDVISNE 241
           ++     I   
Sbjct: 544 LEKMLQTIDKP 554



 Score = 96.7 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 91/233 (39%), Gaps = 26/233 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           R+I L   +    A GS L++ GDT +L TAT     E V        +       G +P
Sbjct: 13  RDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRSEAREGVDFLPLTVDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   GR   R+    R+I R LR +         QII     +        
Sbjct: 73  ---GGIMRRE---GRPPERAILTSRLIDRPLRPLFPSWLRDDLQIIALTLSMDELVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA +A                      G +AA+  G++    I++  Y E    D+
Sbjct: 127 LAVTGASIATLIAQI-------------PFYGPMAAVRVGLVGDDFIINPTYAEIEAGDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     +  G ++ V+  A +    +      ++   + + DLI+ Q+D+I+ 
Sbjct: 174 DLVVAGSPDG-VIMVEAGANQ--LPERDIIEAIDFGYEAVRDLIQAQRDLIAE 223


>gi|320547742|ref|ZP_08042026.1| polyribonucleotide nucleotidyltransferase [Streptococcus equinus
           ATCC 9812]
 gi|320447502|gb|EFW88261.1| polyribonucleotide nucleotidyltransferase [Streptococcus equinus
           ATCC 9812]
          Length = 723

 Score = 98.2 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 83/246 (33%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R +           GS L   G T  L+  TL       I +       
Sbjct: 317 IRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLGAEYK 376

Query: 61  AE----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFLHHYNFPQFSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    +       L  AK    +++ 
Sbjct: 480 ILTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILKEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           L +  I
Sbjct: 539 LIEATI 544



 Score = 82.4 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 87/232 (37%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67
           R + +    V+K A G+ ++++G++ +L+ A + +K+     +     +       G  P
Sbjct: 13  RPLVVEIGQVAKQANGAAVIRYGESTVLSAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R +         Q+I        D     
Sbjct: 73  ---GGFNKRE---GRPTTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +    + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVAYIDGEFIINPSEEQKEKSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S+D     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKEA-INMVESGAKE--LSEDIMLEALLKGHEAVQELIAFQEEIVA 222


>gi|228469449|ref|ZP_04054457.1| polyribonucleotide nucleotidyltransferase [Porphyromonas uenonis
           60-3]
 gi|228309024|gb|EEK17667.1| polyribonucleotide nucleotidyltransferase [Porphyromonas uenonis
           60-3]
          Length = 736

 Score = 98.2 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 81/218 (37%), Gaps = 20/218 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57
           RL GR+ +++R I +         GS +   G+T  L+T TL  K    +     N    
Sbjct: 318 RLDGRRTDEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKLVDDVLNYGKE 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG       +S R+ G       +  RAL+ ++         I +  D
Sbjct: 378 RFLLHYNFPPFSTGEAKASRGISRREIGHG----NLAHRALKRMIPED--YPYVIRVMSD 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176
           +++++G +  A +    +AL D    M+   +   +          IS      Y I+ D
Sbjct: 432 ILESNGSSSMATVCAGTLALRDAGVQMKKPVSGIAMG--------LISENKGTNYAILSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
           +   ED   D+D     T  G I   Q   +    S +
Sbjct: 484 ILGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSYE 520



 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 30/197 (15%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
             GR       I++      K A+G+  V  G T LL   T     +  V       ++ 
Sbjct: 12  PDGRT------ITIETGKLAKQADGAVTVTMGSTVLLAAVTAAKDAKPDVDFMPLQVEYK 65

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
              +  G  P   G   +RE   GR         R++ RALR +         ++ ++  
Sbjct: 66  EKFSAIGRFP---GGFTRRE---GRASDYEILTCRLVDRALRPLFPDD--YHAEVYVNII 117

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +  +DG           V + D L  +   +          G ++ +    + G  +++ 
Sbjct: 118 LFSSDG-----------VDMPDALAGLAASAALAVSDIPFGGPISEVRVARVDGDFVINP 166

Query: 178 DYGEDSTIDVDANFVMT 194
            + +    D+D     T
Sbjct: 167 TFEQLERADIDLMVAAT 183


>gi|254713431|ref|ZP_05175242.1| polynucleotide phosphorylase/polyadenylase [Brucella ceti
           M644/93/1]
 gi|254716212|ref|ZP_05178023.1| polynucleotide phosphorylase/polyadenylase [Brucella ceti M13/05/1]
 gi|261217986|ref|ZP_05932267.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M13/05/1]
 gi|261321164|ref|ZP_05960361.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M644/93/1]
 gi|260923075|gb|EEX89643.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M13/05/1]
 gi|261293854|gb|EEX97350.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M644/93/1]
          Length = 714

 Score = 98.2 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 88/247 (35%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR  + +R I     +     GS L   G+T  +  ATL       + +   G    
Sbjct: 317 RIDGRDLSTVRSIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++  +      I    +
Sbjct: 377 SFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPAAEQFPYTIRAVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A + G  +AL D                 +   VA I+ G++  G     
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGV-------------PIVRPVAGIAMGLIKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G I  +Q   +    +++     L  AK     ++  
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTEFG-ITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGE 538

Query: 234 QKDVISN 240
               IS+
Sbjct: 539 MAKAISS 545



 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 84/248 (33%), Gaps = 40/248 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R ++L    +++ A+G+ L  +G+T +L T       +     +     +   T   G +
Sbjct: 14  RPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR       + R+I R +R +         Q++I   V+Q D    
Sbjct: 74  P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVIT--VLQHDLENN 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++  A  AL                     G ++    G + G  +++ +  E   
Sbjct: 126 PDILSMVAASAAL-------------TISGVPFMGPISGARVGYIDGEYVLNPNIDEMPE 172

Query: 185 IDVDANFVMTDSGHIV---EVQGSAERATFSQDHF---------FAMLNLAKDRIADLIK 232
             +D     T    ++   E Q   E        F          A++ LA+    +   
Sbjct: 173 SKLDLVVAGTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRD 232

Query: 233 LQKDVISN 240
            Q + +S 
Sbjct: 233 FQPEDLSE 240


>gi|317504248|ref|ZP_07962238.1| polyribonucleotide nucleotidyltransferase [Prevotella salivae DSM
           15606]
 gi|315664618|gb|EFV04295.1| polyribonucleotide nucleotidyltransferase [Prevotella salivae DSM
           15606]
          Length = 757

 Score = 98.2 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 94/242 (38%), Gaps = 28/242 (11%)

Query: 3   LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       I++    V+K A+G+ +++ G+T LL T    ++ VP            
Sbjct: 11  PDGRT------ITIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQVDYR 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y    R  G   KRE   G+         R++ RALR +   +     ++ +   ++ 
Sbjct: 65  EQYSAAGRFPGGFTKRE---GKASDNEILTSRLVDRALRPLFPSN--YHAEVYVQVMLLS 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           V   D L      +         +  ++ +    + G  ++D  + 
Sbjct: 120 ADG-----------VDQPDALAGFAASAAMACSDIPFEYAISEVRVARINGEFVIDPTFQ 168

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           + +  D+D     T   +I+ V+G  E    S+      L  A + I  + +LQ++ +S 
Sbjct: 169 QMADADMDLMVAATKD-NIMMVEG--EMKEVSEQDLIDALKAASEAIKPMCELQEE-LSK 224

Query: 241 EV 242
           E+
Sbjct: 225 EL 226



 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 87/250 (34%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           RL GR+   +R I           GS + + G+T  L+T TL  K+   + +      + 
Sbjct: 324 RLDGRKTTDIRPIWCEVSPLPMPHGSAIFQRGETMSLSTCTLGTKLDEKMVDDVMEKSYQ 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  R L+  +         + +   
Sbjct: 384 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRGLKGQIPED--YPYTVRLVSQ 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D    M             K  V+ I+ G++        
Sbjct: 438 ILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVSGIAMGLIKNPGEDKY 484

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G +   Q   +    S +     L  AK     ++
Sbjct: 485 AILSDILGDEDHLGDMDFKTTGTRDG-LTATQMDIKCDGLSFEILEQALMQAKAGREHIL 543

Query: 232 KLQKDVISNE 241
               + IS  
Sbjct: 544 NCMLETISEP 553


>gi|94676543|ref|YP_589052.1| polynucleotide phosphorylase/polyadenylase [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|123384109|sp|Q1LSL2|PNP_BAUCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|94219693|gb|ABF13852.1| polynucleotide phosphorylase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 697

 Score = 98.2 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 93/247 (37%), Gaps = 26/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           +R+ GR    +R + +   +     GS L   G+T  L T TL  +        +   + 
Sbjct: 314 LRIDGRNHKMIRSLDMRTSILPRTHGSALFVRGETQALVTVTLGTERNAQNIDELIGERT 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P   G      +   R+ G      R+  R + +V+  +      + +  
Sbjct: 374 DRFLLHYNFPPYCVGEIGLVGSPKRREIGHG----RLAKRGILAVMPTANEFPYTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           ++ +++G +  A++ G  +AL D                 +K  VA ++ G++       
Sbjct: 430 EITESNGSSSMASVCGTSLALMDAGV-------------PIKAAVAGVAMGLIKEDNNFV 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     + +G I  +Q   +    + +     LN AKD    ++ 
Sbjct: 477 ILSDILSNEDYIGDMDFKVAGSKNG-ITALQMDIKTKGITNNIIQLALNQAKDARMHILN 535

Query: 233 LQKDVIS 239
           + + VIS
Sbjct: 536 MMEQVIS 542



 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 65/212 (30%), Gaps = 27/212 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           + L    V++ A  + +V   DT +L T      ++     +     +   T   G  P 
Sbjct: 16  VILETGIVARQATAAVMVNMADTIVLVTVVGVKQVKPGQKFFPLMVNYQERTYAAGRFP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR       I RMI R LR +     L   Q+I     I         
Sbjct: 75  --GGFFRRE---GRPSEGEILISRMIDRPLRPLFPDGFLNEVQVIATVVSINPQVSPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G   AL                         A   G +    +++    E     +D
Sbjct: 130 AMIGVSAALSISGI-------------PFNCPFGAARVGYINNQYVLNPTIAELVDSSLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                T +  ++     +E    S++   + +
Sbjct: 177 LVVASTANAVLMV---ESEAKQLSEEQMLSAI 205


>gi|73748737|ref|YP_307976.1| polynucleotide phosphorylase/polyadenylase [Dehalococcoides sp.
           CBDB1]
 gi|289432763|ref|YP_003462636.1| polyribonucleotide nucleotidyltransferase [Dehalococcoides sp. GT]
 gi|123759782|sp|Q3ZXV6|PNP_DEHSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|73660453|emb|CAI83060.1| polyribonucleotide nucleotidyltransferase [Dehalococcoides sp.
           CBDB1]
 gi|288946483|gb|ADC74180.1| polyribonucleotide nucleotidyltransferase [Dehalococcoides sp. GT]
          Length = 720

 Score = 98.2 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 94/250 (37%), Gaps = 27/250 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R++GR   Q+R++     +     GS L   GDT ++   TL    E +    +     
Sbjct: 311 IRVNGRGIKQLRQLDAETGLLPRVHGSALFTRGDTQVMAITTLGSLQESQQLDGLSAEDT 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +    SG  G R      +  RAL  V+         I +  
Sbjct: 371 KRFMLHYNFAPFSTGEVKR----SGSPGRREIGHGALAERALVPVLPTPEEFPYTIRLVA 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
           DV+ + G T   ++  + ++L D                 +K  VA IS G++ G     
Sbjct: 427 DVVGSSGSTSMGSVCSSSLSLMDAGV-------------PVKKAVAGISIGLITGENDTY 473

Query: 174 --IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             I D++  ED+  D+D     T  G I  +Q   +    S D     +  AK+   +++
Sbjct: 474 CTITDIEGIEDNYGDMDFKVAGTRDG-ITAIQVDMKVKGISFDIIRDAIYQAKEARYNIL 532

Query: 232 KLQKDVISNE 241
            +    ++  
Sbjct: 533 DVMDKALAQP 542



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 79/230 (34%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R++ +        A+ +  +++ DT LL T        E V        +       G +
Sbjct: 14  RKLVIESGKLARLADAAITIRYADTELLVTLCSAKKPREGVDFLPLTIDYEERMYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  ++RE   GR   ++    R+  R LR ++        QIII       +    
Sbjct: 74  P---GGFIRRE---GRPSEQAILAGRLTDRPLRPLLPKEWRNDLQIIITVIASDKENDAD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              + GA   L                    +G V A   G + G  +++  + +  +  
Sbjct: 128 IWGVVGASTVLAM-------------SEIPYEGPVGASRIGYINGEFVLNPTFAQLESSQ 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D   V T    +V ++  ++     +D     +  A     +LI LQ +
Sbjct: 175 LDLVVVSTRKA-VVMIEAGSKEIP--EDIMINAIEFAHKANQELIDLQDE 221


>gi|77407938|ref|ZP_00784689.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           COH1]
 gi|77173485|gb|EAO76603.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           COH1]
          Length = 709

 Score = 98.2 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 84/248 (33%), Gaps = 26/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRRVDEIRPLDAVIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEAQIIDGLTPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +  A   R+ G       +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEALAQAKKARFEILD 538

Query: 233 LQKDVISN 240
           +    I+ 
Sbjct: 539 VLHGAIAE 546



 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 26/230 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
           ++ +    V+K A GS +V++GD+ +LT A + +K      +     +       G  P 
Sbjct: 14  KLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR    +    R+I R +R +         Q+I        +     A
Sbjct: 73  --GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDENASAPMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +    + G  I++    E     ++
Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                T    I  V+  A+    S++     L    + + +LI  Q++++
Sbjct: 175 LTVAGTKEA-INMVESGAKE--LSEEIMLEALLKGHEAVCELIAFQEEIV 221


>gi|299115591|emb|CBN75793.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 834

 Score = 98.2 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 86/240 (35%), Gaps = 14/240 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI-- 59
           R  GR+ +++R IS+   +     GSCL   GDT  + T TL         +   G I  
Sbjct: 342 RCDGRRTDEVRPISIETGLLPRTHGSCLFTRGDTQAIATVTLGGSGSSQKTDGITGMILK 401

Query: 60  --TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
               +Y   P   G   +      R+ G       +  +AL   V         + ++  
Sbjct: 402 HFYLQYTFPPSCVGETGRIGGPGRREVGHG----ALAEKALSYTVPPVNDFPYTVRVESL 457

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + ++ G +  A++ G  +A+ D    +        +  +L     +    ++    + D+
Sbjct: 458 ITESCGSSSMASVCGGSLAMMDAGIPVSSPIAGVAMGLLLDEEGGSGEEAVV----LTDI 513

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-IADLIKLQKD 236
              ED+   +D      D G I   Q   + A  +       L  AK   +  L ++QK 
Sbjct: 514 LGLEDALGTMDFKVAGNDKG-ITTFQLDIKCAGLTTALLGRALTQAKAGRLHILGEMQKA 572



 Score = 55.1 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 77/222 (34%), Gaps = 23/222 (10%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R++S     V + A G+ + + G+T + +TA  + K      +         +     ++
Sbjct: 33  RDLSFETGKVGRQASGAVMARDGETVVYSTACTDRKTTTSNFSPLRVDYMERFSAAGMTS 92

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G   KR+   GR   +   + R++ R LR  +        Q++    V+  D        
Sbjct: 93  GGYNKRD---GRASDKETLVSRLMDRPLRPAMHPGWFHETQLL--SWVLSYD-------- 139

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDA 189
               V     L      +     +  L   +A ++ GM   G  +V+ +           
Sbjct: 140 ---TVHPPVPLAITAASAALALSNVPLVRAIAGVTVGMDSEGELVVNPEIS--VAAMSPL 194

Query: 190 NFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           N  +   +  ++ ++G  E     ++     + +    + DL
Sbjct: 195 NLTIAGTADGVLMIEG--ESDFVCEEDMMRAIEVGHAAVRDL 234


>gi|281423345|ref|ZP_06254258.1| polyribonucleotide nucleotidyltransferase [Prevotella oris F0302]
 gi|281402681|gb|EFB33512.1| polyribonucleotide nucleotidyltransferase [Prevotella oris F0302]
          Length = 757

 Score = 98.2 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 94/242 (38%), Gaps = 28/242 (11%)

Query: 3   LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       I++    V+K A+G+ +++ G+T LL T    ++ VP            
Sbjct: 11  PDGRT------ITIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQVDYR 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y    R  G   KRE   G+         R++ RALR +   +     ++ +   ++ 
Sbjct: 65  EQYSAAGRFPGGFTKRE---GKASDNEILTSRLVDRALRPLFPSN--YHAEVYVQVMLLS 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           V   D L      +         +  ++ +    + G  ++D  + 
Sbjct: 120 ADG-----------VDQPDALAGFAASAAMACSDIPFEYAISEVRVARINGEYVIDPTFQ 168

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           + +  D+D     T   +I+ V+G  E    S+      L  A + I  + +LQ++ +S 
Sbjct: 169 QMADADMDLMVAATKD-NIMMVEG--EMKEVSEQDLIGALKAAAEAIKPMCELQEE-LSK 224

Query: 241 EV 242
           E+
Sbjct: 225 EL 226



 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 87/250 (34%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           RL GR+   +R I           GS + + G+T  L+T TL  K+   + +      + 
Sbjct: 324 RLDGRKTTDIRPIWCEVSPLPMPHGSAIFQRGETMSLSTCTLGTKLDEKMVDDVLEKSYM 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  R L+  +         + +   
Sbjct: 384 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRGLKGQIPED--YPYTVRLVSQ 437

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D    M             K  V+ I+ G++        
Sbjct: 438 ILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVSGIAMGLIKNPGEDKY 484

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G +   Q   +    S +     L  AK     ++
Sbjct: 485 AILSDILGDEDHLGDMDFKTTGTRDG-LTATQMDIKCDGLSFEILEQALMQAKAGREHIL 543

Query: 232 KLQKDVISNE 241
               + IS  
Sbjct: 544 NCMLETISEP 553


>gi|328784963|ref|XP_396984.3| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Apis mellifera]
          Length = 747

 Score = 98.2 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 81/224 (36%), Gaps = 40/224 (17%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR  N++REIS    + +   GS   + G T +L T TL+        + + M    
Sbjct: 354 RCDGRGMNELREISCQVDLFQPLHGSAFFQRGQTQVLCTVTLDSIESSLKLDTISMLSSG 413

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +     K   +  R+ G       +  + L++V+  +      I 
Sbjct: 414 IKEKNFFLHYEFPPYAINETGKLTGIDRREIGHG----ALAEKGLQAVIPQN--YPFAIR 467

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-- 171
           +  +V++++G +  A+I G  +AL +                 +   VA ++ G++C   
Sbjct: 468 LTSEVLESNGSSSMASICGGSLALMNAGI-------------PISSPVAGVAMGLVCNNT 514

Query: 172 ----------YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
                       + D+   ED   D+D     T  G     Q  
Sbjct: 515 NTADLKETDYKILTDISGIEDHLGDMDFKIAGTKRG-FTAFQAD 557



 Score = 85.5 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 79/231 (34%), Gaps = 27/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           EI L+    +++  GS +   GDT ++TT  +   V   + N     +T  Y     + G
Sbjct: 52  EIKLSTGKYARFTSGSVIATVGDTSIMTTV-VRNNV---LSNNSIIPLTVNYRQKAAAIG 107

Query: 72  NRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            R+         G    EI   R+I R+LR +         QI+ +   I         +
Sbjct: 108 -RIPTNFFRRELGYTDNEILVSRIIDRSLRPLFQPKYSYETQIVCNLLAIDGINNPDVLS 166

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           I  A  AL                     G VAA+  G++    I++    E     ++ 
Sbjct: 167 INAASAALS-------------ISDIPWNGPVAAVRIGLIDNTYIINPSKRELQQSKLNL 213

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI----KLQKD 236
                    IV ++GSA      +      + L       +I    +LQK 
Sbjct: 214 VLSCISKNLIVMIEGSANDIL--EPELRKAIKLGIKECQTIINSISELQKQ 262


>gi|24378670|ref|NP_720625.1| polynucleotide phosphorylase/polyadenylase [Streptococcus mutans
           UA159]
 gi|81452619|sp|Q8DWB2|PNP_STRMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|24376532|gb|AAN57931.1|AE014867_3 polyribonucleotide nucleotidyltransferase [Streptococcus mutans
           UA159]
          Length = 730

 Score = 98.2 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 85/247 (34%), Gaps = 28/247 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+  TL           +     
Sbjct: 317 VRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPMGDTQIVDGLDEEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIID 115
                 Y     S G   +     G  G R      +  RAL  V+  L A     I + 
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEAFP-YAIRLV 431

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V++++G +  A+I    +AL                   +K  VA I+ G++      
Sbjct: 432 AEVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNY 478

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I  +Q   +    +       L  AK    +++
Sbjct: 479 TVLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEALAQAKKARFEIL 537

Query: 232 KLQKDVI 238
            + + VI
Sbjct: 538 DVIEKVI 544



 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 88/231 (38%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
           ++++    V+K A G+ LV++GD+ +L+ A + +K      +     +       G  P 
Sbjct: 14  KLAVEIGQVAKQANGAALVRYGDSTVLSAAVMSKKMSTGDFFPLQINYEEKRYAAGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR    +    R+I R +R +         Q+I       AD     A
Sbjct: 73  --GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDADASAPMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +    L G  +++    E     ++
Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVAYLDGQYVINPTAEEKKASLLE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                T    I  V+  A+    S+D     L    + + +LI  Q+++I+
Sbjct: 175 LTVAGTKEA-INMVESGAKE--LSEDIMLEALLKGHEAVRELIAFQEEIIA 222


>gi|290579654|ref|YP_003484046.1| polyribonucleotide nucleotidyltransferase [Streptococcus mutans
           NN2025]
 gi|254996553|dbj|BAH87154.1| polyribonucleotide nucleotidyltransferase [Streptococcus mutans
           NN2025]
          Length = 730

 Score = 98.2 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 85/247 (34%), Gaps = 28/247 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+  TL           +     
Sbjct: 317 VRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPMGDTQIVDGLDEEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIID 115
                 Y     S G   +     G  G R      +  RAL  V+  L A     I + 
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEAFP-YAIRLV 431

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V++++G +  A+I    +AL                   +K  VA I+ G++      
Sbjct: 432 AEVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNY 478

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I  +Q   +    +       L  AK    +++
Sbjct: 479 TVLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEALAQAKKARFEIL 537

Query: 232 KLQKDVI 238
            + + VI
Sbjct: 538 DVIEKVI 544



 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 88/231 (38%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
           ++++    V+K A G+ LV++GD+ +L+ A + +K      +     +       G  P 
Sbjct: 14  KLAVEIGQVAKQANGAALVRYGDSTVLSAAVMSKKMSTGDFFPLQINYEEKRYAAGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR    +    R+I R +R +         Q+I       AD     A
Sbjct: 73  --GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDADASAPMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +    L G  +++    E     ++
Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVAYLDGQYVINPTAEEKKASLLE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                T    I  V+  A+    S+D     L    + + +LI  Q+++I+
Sbjct: 175 LTVAGTKEA-INMVESGAKE--LSEDIMLEALLKGHEAVRELIAFQEEIIA 222


>gi|312112862|ref|YP_004010458.1| polyribonucleotide nucleotidyltransferase [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311217991|gb|ADP69359.1| polyribonucleotide nucleotidyltransferase [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 709

 Score = 98.2 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 90/246 (36%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     V     GS L   G+T  L  ATL         ++  G    
Sbjct: 314 RIDGRDLKTVRPILSQVGVIPRTHGSSLFTRGETQALVVATLGTGEDEQWIDSLEGTYKE 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++  S      + +  +
Sbjct: 374 SFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAVHPMMPKSDTFPYTVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPI 174
           + +++G +  A++ GA ++L D                 +K  VA I+ G++    G  +
Sbjct: 430 ITESNGSSSMASVCGASLSLMDAGV-------------PIKAPVAGIAMGLIKEAEGVAV 476

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     + +G +  +Q   +    + +     L  A +    ++  
Sbjct: 477 LSDIIGDEDHLGDMDFKVAGSANG-VTALQMDIKITGITTEIMKIALEQAHEGRLHILGE 535

Query: 234 QKDVIS 239
               ++
Sbjct: 536 MSKALN 541



 Score = 85.9 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 79/228 (34%), Gaps = 29/228 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGML 66
           R+++L    +++ A+G+ L  +G+T +L T   E         +     +       G +
Sbjct: 14  RKLTLETGRIARQADGAVLAHYGETSVLATVVGERDADPSKDFFPLTVNYQEKAYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR   R   + R+I R +R +         Q+I+       +    
Sbjct: 74  P---GGYFKRE---GRPTERETLVSRLIDRPIRPLFAHGFKNETQVIVTVLSHDMENDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                     G +AA   G   G  I++    +    D
Sbjct: 128 IVAMVAASAAL-------------TISGLPFLGPIAASRVGYSKGEYILNPTSDQIKASD 174

Query: 187 VDANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +D     T D+  +VE    +E    S+D     +   +     +I  
Sbjct: 175 LDLVVAGTVDAVLMVE----SEAKELSEDIMLGAVVFGQQGYKPVIDA 218


>gi|329113570|ref|ZP_08242350.1| Polyribonucleotide nucleotidyltransferase [Acetobacter pomorum
           DM001]
 gi|326697092|gb|EGE48753.1| Polyribonucleotide nucleotidyltransferase [Acetobacter pomorum
           DM001]
          Length = 716

 Score = 98.2 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 86/247 (34%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I     +     GS L   G+T  L   TL       + +   G    
Sbjct: 314 RIDGRDLVTVRPIVPEVGILPRVHGSSLFTRGETQALVVTTLGTGQDEQVIDALEGEYRT 373

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++         + +  +
Sbjct: 374 NFMLHYNFPPFSVGECGR----IGSPGRREIGHGKLAWRAIHPLMPSRKEFPYTVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A + G  +AL D                 LK  VA I+ G++        
Sbjct: 430 ITESNGSSSMATVCGGSLALMDAGV-------------PLKRPVAGIAMGLIKEGDDFAV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G +  +Q   +  + + +     L  A+D    ++  
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTEQG-VTALQMDIKITSITPEIMKIALGQARDGRMHILGE 535

Query: 234 QKDVISN 240
               ++ 
Sbjct: 536 MSKALTE 542



 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 77/235 (32%), Gaps = 36/235 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + L    V++ A+G+ +V +G+T +L TA   ++V           +T  Y     + 
Sbjct: 14  RPLILETGKVARQADGAVMVTYGETVVLCTAVGAKEVKP---GQDFFPLTVNYQEKAYAA 70

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G       KRE   GR       + R+I R LR +         Q+I        +    
Sbjct: 71  GKIPGGFFKRE---GRPSENETLVSRLIDRPLRPLFPEGFRNEVQVIATVLTHDMENDPS 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G   AL                     G V A   G   G  I++    +    D
Sbjct: 128 IPALIGCSAALTLSGI-------------PFFGPVGAARVGFKDGAFILNPTQEQIKESD 174

Query: 187 VDANFVMTDSGHI------------VEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
           ++     T  G +            V +       T  Q    A+++LA+    +
Sbjct: 175 LELVVAGTAEGVLMVESEASELSEEVMLDAVTFGHTAFQPVLDAIISLAEHAAKE 229


>gi|258543487|ref|YP_003188920.1| polynucleotide phosphorylase/polyadenylase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256634565|dbj|BAI00541.1| polyribonucleotide nucleotidyltransferase RNA binding S1
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256637623|dbj|BAI03592.1| polyribonucleotide nucleotidyltransferase RNA binding S1
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640675|dbj|BAI06637.1| polyribonucleotide nucleotidyltransferase RNA binding S1
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643732|dbj|BAI09687.1| polyribonucleotide nucleotidyltransferase RNA binding S1
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646787|dbj|BAI12735.1| polyribonucleotide nucleotidyltransferase RNA binding S1
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649840|dbj|BAI15781.1| polyribonucleotide nucleotidyltransferase RNA binding S1
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652828|dbj|BAI18762.1| polyribonucleotide nucleotidyltransferase RNA binding S1
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655884|dbj|BAI21811.1| polyribonucleotide nucleotidyltransferase RNA binding S1
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 716

 Score = 98.2 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 86/247 (34%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R I     +     GS L   G+T  L   TL       + +   G    
Sbjct: 314 RIDGRDLVTVRPIVPEVGILPRVHGSSLFTRGETQALVVTTLGTGQDEQVIDALEGEYRT 373

Query: 62  E----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++         + +  +
Sbjct: 374 NFMLHYNFPPFSVGECGR----IGSPGRREIGHGKLAWRAIHPLMPSRKEFPYTVRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A + G  +AL D                 LK  VA I+ G++        
Sbjct: 430 ITESNGSSSMATVCGGSLALMDAGV-------------PLKRPVAGIAMGLIKEGDDFAV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G +  +Q   +  + + +     L  A+D    ++  
Sbjct: 477 LSDILGDEDHLGDMDFKVAGTEQG-VTALQMDIKITSITPEIMKIALGQARDGRMHILGE 535

Query: 234 QKDVISN 240
               ++ 
Sbjct: 536 MSKALTE 542



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 76/235 (32%), Gaps = 36/235 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + L    V++ A+G+ +V +G+T +L TA   + V           +T  Y     + 
Sbjct: 14  RPLILETGKVARQADGAVMVTYGETVVLCTAVGAKDVKP---GQDFFPLTVNYQEKAYAA 70

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G       KRE   GR       + R+I R LR +         Q+I        +    
Sbjct: 71  GKIPGGFFKRE---GRPSENETLVSRLIDRPLRPLFPEGFRNEVQVIATVLTHDMENDPS 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G   AL                     G V A   G   G  I++    +    D
Sbjct: 128 IPALIGCSAALTLSGI-------------PFFGPVGAARVGFKDGAFILNPTQEQIKESD 174

Query: 187 VDANFVMTDSGHI------------VEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
           ++     T  G +            V +       T  Q    A+++LA+    +
Sbjct: 175 LELVVAGTAEGVLMVESEASELSEEVMLDAVTFGHTAFQPVLDAIISLAEHAAKE 229


>gi|320528964|ref|ZP_08030056.1| polyribonucleotide nucleotidyltransferase [Selenomonas artemidis
           F0399]
 gi|320138594|gb|EFW30484.1| polyribonucleotide nucleotidyltransferase [Selenomonas artemidis
           F0399]
          Length = 690

 Score = 98.2 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 88/235 (37%), Gaps = 28/235 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-----LEEKVPMWIRNTK 55
           +R  GR  N++R +S    +     GS L   G T +L T T      +E++   +    
Sbjct: 310 IRPDGRALNEVRPVSCEVGILPRTHGSGLFTRGQTQVL-TVTTLGSIGDEQIIDGLGPET 368

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G      +   R+ G       +  RAL  ++         I + 
Sbjct: 369 TKHYLHHYNFPGYSVGEARPMRSPGRREIGHG----ALAERALFPMIPSIEDFPYTIRLV 424

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            ++++++G +   ++ G+ ++L                   +K  V+ ++ G++      
Sbjct: 425 SEILESNGSSSMGSVCGSTLSLMCAGV-------------PIKRPVSGVAMGLVRDGDDY 471

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             + D+   ED+  D+D     T  G I  +Q   + A  ++D   + L  AK+ 
Sbjct: 472 SILTDIQGMEDALGDMDFKVAGTAKG-ITAIQMDIKIAGITRDILASALAQAKEG 525



 Score = 92.8 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 82/229 (35%), Gaps = 27/229 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R I +      K A G+ LV++GDT +L TAT      E V  +     +       G +
Sbjct: 11  RNIIVEHGKMAKQANGAALVRYGDTVVLVTATASSAPREGVDFFPLTVDYEEKMYAAGKI 70

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR    +    R+I R +R +         QI+     +  D    
Sbjct: 71  P---GGFIKRE---GRPSNDAVLCARLIDRPIRPLFPEGFRNDVQIVATVLSVDQDNPPE 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA  AL                     G +A +  G + G  +++    E+    
Sbjct: 125 IAAMLGASCAL-------------TVSDIPFMGPIAGVRVGYINGAFVINP--KEEERAV 169

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            + N  +  S   V +  +      S++     +      I  L++ QK
Sbjct: 170 SELNLTVAGSYDAVMMVEAG-ANELSEEIVLDAILFGHAEIRRLVEFQK 217


>gi|307942752|ref|ZP_07658097.1| polyribonucleotide nucleotidyltransferase [Roseibium sp. TrichSKD4]
 gi|307773548|gb|EFO32764.1| polyribonucleotide nucleotidyltransferase [Roseibium sp. TrichSKD4]
          Length = 710

 Score = 98.2 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 92/247 (37%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R IS    +   A GS L   G+T  L  ATL           ++ T   
Sbjct: 316 RIDGRDLSTVRAISSEVGILPRAHGSALFTRGETQGLVVATLGTGEDEQFVDLLQGTMKE 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++         + +  +
Sbjct: 376 HFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAVHPMLPAHHEFPYTLRVVSE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A + G  +AL D                 LK  VA I+ G++        
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGV-------------PLKAPVAGIAMGLIKEGDRFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +++G I  +Q   +    +++     L  AKD    ++  
Sbjct: 479 LSDILGDEDHLGDMDFKVAGSENG-ITSLQMDIKIDGITEEIMKVALAQAKDGRIHILGE 537

Query: 234 QKDVISN 240
             + I+ 
Sbjct: 538 MANAITE 544



 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 70/227 (30%), Gaps = 27/227 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R + L    +++ A+G+ +  +G+T ++ T     + +     +     +       G +
Sbjct: 14  RPLVLETGKIARQADGAVMATYGETKVMATVVSAKSPKPGQDFFPLTVNYQEKAFAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR         R+I R +R +         Q+I+       +    
Sbjct: 74  P---GGYFKRE---GRPSEHETLTSRLIDRPIRPLFADGYKNDTQVILTVLSHDMENAPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                     G +     G + G  +++    +     
Sbjct: 128 ILAMVAASAAL-------------TLSGVPFMGPIGGARVGYINGEYVLNPAVDDMEESS 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +D     T    ++     +E     +D     +   +     +I  
Sbjct: 175 LDLVVAGTSEAVLMV---ESEAKELDEDTMLGAVVFGQKGFQPVIDA 218


>gi|325111014|ref|YP_004272082.1| polyribonucleotide nucleotidyltransferase [Planctomyces
           brasiliensis DSM 5305]
 gi|324971282|gb|ADY62060.1| Polyribonucleotide nucleotidyltransferase [Planctomyces
           brasiliensis DSM 5305]
          Length = 711

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 89/238 (37%), Gaps = 20/238 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR    +R+IS    +     GS L   G+T  L + TL             G  T 
Sbjct: 318 RLDGRGPTDLRQISCKVGLVPRVHGSALFTRGETQSLASLTLGTVRDQQRVEDLFGEHTK 377

Query: 62  EYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            + ML  +  +    E    R  G R      +  R+++ V+   +     I I  D+ +
Sbjct: 378 RF-MLDYNFPSYSVGEVRPIRGPGRREIGHGALAERSVQWVLPDESAFPYTIRIISDITE 436

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YPIVD 176
           ++G +  A++  A +AL D                 ++  VA IS G++        + D
Sbjct: 437 SNGSSSMASVCNATLALMDAGI-------------PIRQPVAGISIGLVKDGDKYTLLTD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           +   ED   D+D     T  G I  +Q   +    +++     L  A+    +L+K  
Sbjct: 484 IMGDEDHFGDMDFKIAGTQKG-ITGIQLDLKIDGINEEIIRGTLEQARKARLELLKAM 540



 Score = 91.7 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 88/234 (37%), Gaps = 30/234 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R    +   ++K A G+ L +FGDT LL  A      E +  +     +    A  G  P
Sbjct: 15  RIFKFSTGEIAKQASGAVLAQFGDTVLLVAAQTGPAREGIDFFPMTVDYRERFAAAGKFP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT-- 125
              G  +KRE   GR         R+  R LR +   S     Q+     V+ +DG    
Sbjct: 75  ---GGFLKRE---GRPSTHEILTARLTDRPLRPLFPKSFHDEVQVQ--SIVLSSDGENPS 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              +I GA  AL                    +G + A+  GM+ G  I+     +    
Sbjct: 127 DVVSINGASAALS-------------LSPVPFQGPIGAVRVGMIEGEFILFPTKEQIDQG 173

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D+D   V  +   I+ ++G   +    +D     L  A   I +L +LQ++++ 
Sbjct: 174 DLDL-VVAGNKESILMIEGFGRQIP--EDVMADALMFAHKGIIELCELQEELVK 224


>gi|225562674|gb|EEH10953.1| exonuclease [Ajellomyces capsulatus G186AR]
          Length = 292

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 84/254 (33%), Gaps = 21/254 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN---TKHG 57
           +RL GR+ N++R +      +  + GS  +  G+T ++       +           +  
Sbjct: 14  LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++    +   S  +R K+ A  G    + S ++   +  A +  +         I +  
Sbjct: 74  VVSVAVNVAGFSGVDRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHV 133

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDC------SNKFQLSQVLKGHVAAISCGMLC 170
            V+ +DG    A I    +AL D    M             + S   +  +  +  G+  
Sbjct: 134 SVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAEPELTRVGGGINE 193

Query: 171 G-YPIVDLDYGEDSTID----VDANFVMTDSGHIV---EVQGS---AERATFSQDHFFAM 219
              P++D+   E+  +      + N   T    +    E Q        A     +   M
Sbjct: 194 SLDPLLDMSMPEEQELPFMTVANTNPAPTGDDSMDDQEENQMLSIVQMGAGVHISYLETM 253

Query: 220 LNLAKDRIADLIKL 233
             +  D    + ++
Sbjct: 254 FAVGLDGCKQVREI 267


>gi|225871265|ref|YP_002747212.1| polyribonucleotide nucleotidyltransferase [Streptococcus equi
           subsp. equi 4047]
 gi|254782736|sp|C0M913|PNP_STRE4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225700669|emb|CAW95251.1| polyribonucleotide nucleotidyltransferase [Streptococcus equi
           subsp. equi 4047]
          Length = 714

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 88/250 (35%), Gaps = 28/250 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----H 56
           +R  GR+ +++R ++          GS L   G T  L+  TL       I +       
Sbjct: 317 VRPDGRRVDEIRPLAAEIDFLPRVHGSGLFTRGQTQALSVLTLAPMGDTQIIDGLEPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIID 115
                 Y     S G   +  A   R+ G       +  RAL  V+  L A     I + 
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALAQVLPSLEAFP-YAIRLV 431

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V++++G +  A+I    +AL                   +K  VA I+ G++      
Sbjct: 432 AEVLESNGSSSQASICAGTLALMAAGV-------------PIKAPVAGIAMGLISDGTNY 478

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I  +Q   +    +       L  AK    +++
Sbjct: 479 TVLTDIQGLEDHFGDMDFKVAGTRQG-ITALQMDIKIEGITPQILEEALAQAKKARFEIL 537

Query: 232 KLQKDVISNE 241
            L +  I+  
Sbjct: 538 DLIEATIAEP 547



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 85/231 (36%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
            + +    V+K A G+ +V++G++ +LT A + +K      +     +       G  P 
Sbjct: 14  PLVVEVGQVAKRANGATVVRYGESTVLTAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR    +    R+I R +R +         Q+I        D     A
Sbjct: 73  --GGWMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASAPMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +    + G  I++ D  +     ++
Sbjct: 128 AMLGSSLALS-------------ISDIPFNGPIAGVQVAYVEGEFIINPDKAQQEASLLE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                T    I  V+  A+     +      L +    I +LI  Q+++++
Sbjct: 175 LTVAGTKDA-INMVESGAKE--LPEAIMLEALLVGHKAIQELIAFQEEIVA 222


>gi|222152456|ref|YP_002561631.1| polynucleotide phosphorylase/polyadenylase [Streptococcus uberis
           0140J]
 gi|254782739|sp|B9DTE3|PNP_STRU0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|222113267|emb|CAR40790.1| polyribonucleotide nucleotidyltransferase [Streptococcus uberis
           0140J]
          Length = 732

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 83/241 (34%), Gaps = 26/241 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        + ++   + +   
Sbjct: 317 VRPDGRKVDEIRPLDAQIDFLPKVHGSGLFTRGQTQALSVLTLAPMGDTQIIDGLDDEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +  A   R+ G       +  RAL  V+         I +  
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIEGITPQILEEALAQAKKARFEILD 538

Query: 233 L 233
           L
Sbjct: 539 L 539



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 87/231 (37%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
            + +    V+K A G+ +V++G++ +LT A + +K      +     +       G  P 
Sbjct: 14  PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR    +    R+I R +R +         Q+I        +     A
Sbjct: 73  --GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEIQVINTVLSYDENASAPMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +  G + G  I++ D  +     ++
Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVGYIDGEFIINPDKAQMEASLLE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                +    I  V+  A+    S+D     L      I +LI  Q+++++
Sbjct: 175 LTVAGSKEA-INMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEEIVA 222


>gi|46446277|ref|YP_007642.1| polynucleotide phosphorylase/polyadenylase [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46399918|emb|CAF23367.1| probable polyribonucleotide nucleotidyltransferase [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 702

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 86/234 (36%), Gaps = 26/234 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMW--IRNTKH 56
           +R  GR    +R I + + +   A GS L   G+T  L   T         +  +    +
Sbjct: 320 VRSDGRTSTDIRFIDIEQSLLPRAHGSSLFTRGETQALAVCTLGGASMAQRFEDLEGEGN 379

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +  A   R+ G      ++  RAL +V+         I ++ 
Sbjct: 380 NRFYLQYSFPPYSVGEVGRVGAPGRREIGHG----KLAERALMAVIPTKEQFPYTIRLES 435

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++ +++G +  A + G  +AL D                 +K  VA I+ G++       
Sbjct: 436 NITESNGSSSMATVCGGCLALMDAGVA-------------IKRPVAGIAMGLILENERFI 482

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED+  D+D       +G I   Q   +    + +     L  AK+ 
Sbjct: 483 ILSDILGIEDALGDMDFKVTGDQNG-ITAFQMDIKVEGITIEIMRVALKQAKEG 535



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 79/225 (35%), Gaps = 27/225 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY----GMLP 67
           EI      +++ A G+ +V+ G+T + TTA      P     T    +  +Y        
Sbjct: 19  EIIFETGKIARQAGGAVVVRCGETVVFTTAC---AAPNADSTTDFLPLRVDYQEKFSSAG 75

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
           ++ G  +KRE   GR   +   + R+I R +R + +       Q++              
Sbjct: 76  KTLGGFIKRE---GRPTEKEVLVSRLIDRPIRPMFEEGYYNEVQLLSFVWSYDGINSPEP 132

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AI GA  AL                   L   V A+  G +    IV+    +     +
Sbjct: 133 LAICGASAALV-------------ISDIPLIKPVGAVRIGFIDAQFIVNPTIEQQKQSKL 179

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++ ++G  +    ++D     + +    I  + +
Sbjct: 180 DLLIAGTEEA-VLMIEGFCD--FLTEDQVLEAIEIGHRSIKTICQ 221


>gi|299142521|ref|ZP_07035652.1| polyribonucleotide nucleotidyltransferase [Prevotella oris C735]
 gi|298575956|gb|EFI47831.1| polyribonucleotide nucleotidyltransferase [Prevotella oris C735]
          Length = 748

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 94/242 (38%), Gaps = 28/242 (11%)

Query: 3   LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       I++    V+K A+G+ +++ G+T LL T    ++ VP            
Sbjct: 2   PDGRT------ITIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQVDYR 55

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y    R  G   KRE   G+         R++ RALR +   +     ++ +   ++ 
Sbjct: 56  EQYSAAGRFPGGFTKRE---GKASDNEILTSRLVDRALRPLFPSN--YHAEVYVQVMLLS 110

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           V   D L      +         +  ++ +    + G  ++D  + 
Sbjct: 111 ADG-----------VDQPDALAGFAASAAMACSDIPFEYAISEVRVARINGEYVIDPTFQ 159

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           + +  D+D     T   +I+ V+G  E    S+      L  A + I  + +LQ++ +S 
Sbjct: 160 QMADADMDLMVAATKD-NIMMVEG--EMKEVSEQDLIGALKAAAEAIKPMCELQEE-LSK 215

Query: 241 EV 242
           E+
Sbjct: 216 EL 217



 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 87/250 (34%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           RL GR+   +R I           GS + + G+T  L+T TL  K+   + +      + 
Sbjct: 315 RLDGRKTTDIRPIWCEVSPLPMPHGSAIFQRGETMSLSTCTLGTKLDEKMVDDVLEKSYM 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  R L+  +         + +   
Sbjct: 375 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRGLKGQIPED--YPYTVRLVSQ 428

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D    M             K  V+ I+ G++        
Sbjct: 429 ILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVSGIAMGLIKNPGEDKY 475

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G +   Q   +    S +     L  AK     ++
Sbjct: 476 AILSDILGDEDHLGDMDFKTTGTRDG-LTATQMDIKCDGLSFEILEQALMQAKAGREHIL 534

Query: 232 KLQKDVISNE 241
               + IS  
Sbjct: 535 NCMLETISEP 544


>gi|169630188|ref|YP_001703837.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium abscessus
           ATCC 19977]
 gi|226702665|sp|B1MD62|PNP_MYCA9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169242155|emb|CAM63183.1| Bifunctional protein polyribonucleotide nucleotidyltransferase GpsI
           [Mycobacterium abscessus]
          Length = 755

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 87/243 (35%), Gaps = 11/243 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    V   A GS L + G+T ++   T  + + M  +    G  T
Sbjct: 346 FRIDGRGVTDIRALSAEVAVIPRAHGSALFERGETQIM-GVTTLDMIKMAQQVDSLGPET 404

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 405 TKRYMHHYNFPPFSTGETGRVGSPKRREIGHG----ALAERALIPVLPSIEEFPYAIRQV 460

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            + + ++G T   ++  + +AL +    ++       +  V      A          + 
Sbjct: 461 SEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDIELADGTAERRFVALT 520

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED+  D+D     T    +  +Q   +          A L+ AKD    ++++  
Sbjct: 521 DILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAAALSQAKDARTTILEVMA 579

Query: 236 DVI 238
           + I
Sbjct: 580 EAI 582



 Score = 52.0 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 75/251 (29%), Gaps = 48/251 (19%)

Query: 12  REISLTRRVSK-YAEGSCLVKFGD-THLL----TTATLEEKVPMWIRNTKHGWITAEYGM 65
           R I          A GS +    D T LL     + T ++    +             G 
Sbjct: 25  RTIRFETGRLALQAAGSVVAYLDDETMLLSTTAASKTPKDHFDFFPLTVDVEERMYAAGR 84

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ-ADGG 124
           +P   G+  +RE   GR    +    R+I R LR           Q+++    +  AD  
Sbjct: 85  IP---GSFFRRE---GRPSTDAILTCRLIDRPLRPSFVSGLRNEIQVVVTVLSLNPAD-- 136

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE--- 181
                       L+D L      ++         G V  +   ++ G  +      +   
Sbjct: 137 ------------LYDVLAINAASASTQLAGLPFSGPVGGVRVALIEGQWVAFPTVEQLEK 184

Query: 182 ------------DSTIDVDANFVMTD----SGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                        +  D D   +M +       I  + G A  A  ++      L  AK 
Sbjct: 185 AVFDMVVAGRKVGTAGDSDVAIMMVEAEATDNVIALIDGGA-GAP-TETVVAEGLEAAKP 242

Query: 226 RIADLIKLQKD 236
            IA L   Q++
Sbjct: 243 FIAALCTAQEE 253


>gi|313887414|ref|ZP_07821103.1| polyribonucleotide nucleotidyltransferase [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332299600|ref|YP_004441521.1| Polyribonucleotide nucleotidyltransferase [Porphyromonas
           asaccharolytica DSM 20707]
 gi|312923056|gb|EFR33876.1| polyribonucleotide nucleotidyltransferase [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332176663|gb|AEE12353.1| Polyribonucleotide nucleotidyltransferase [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 736

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 81/218 (37%), Gaps = 20/218 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKHG 57
           RL GR+ N++R I +         GS +   G+T  L+T TL  K    +     N    
Sbjct: 318 RLDGRRTNEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLGTKSDEKLVDDVLNYGKE 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG       +S R+ G       +  RAL+ ++         I +  D
Sbjct: 378 RFLLHYNFPPFSTGEAKASRGISRREIGHG----NLAHRALKRMIPED--YPYVIRVMSD 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176
           +++++G +  A +    +AL D    M+   +   +          IS      Y I+ D
Sbjct: 432 ILESNGSSSMATVCAGTLALRDAGVQMKKPVSGIAMG--------LISENKGTNYAILSD 483

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
           +   ED   D+D     T  G I   Q   +    S +
Sbjct: 484 ILGDEDHLGDMDFKVTGTRDG-ITATQMDIKVDGLSYE 520



 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 30/197 (15%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
             GR       I++      K A+G+  V  G T LL   T     +  V       ++ 
Sbjct: 12  PDGRT------ITIETGKLAKQADGAVTVTMGSTVLLAAVTAAKEAKPDVDFMPLQVEYK 65

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
              +  G  P   G   +RE   GR         R++ RALR +         ++ ++  
Sbjct: 66  EKYSAVGRFP---GGFTRRE---GRASDYEILTCRLVDRALRPLFPDD--YHAEVYVNII 117

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +  +DG           V + D L  +   +          G ++ +    + G  +++ 
Sbjct: 118 LFSSDG-----------VDMPDALAGLAASAALAVSDIPFGGPISEVRVARIDGEFVINP 166

Query: 178 DYGEDSTIDVDANFVMT 194
            + +    D+D     T
Sbjct: 167 TFEQLERADIDLMVAAT 183


>gi|218191180|gb|EEC73607.1| hypothetical protein OsI_08089 [Oryza sativa Indica Group]
          Length = 1030

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/295 (18%), Positives = 94/295 (31%), Gaps = 59/295 (20%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG--- 57
           +R+ GRQ +++R +           GS L   GDT +L T TL         ++  G   
Sbjct: 372 LRVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPT 431

Query: 58  -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQ---------------------------- 88
                 Y   P S     KR  ++ R+ G                               
Sbjct: 432 KRFMLHYSFPPFSINEVAKRGGLNRREVGHVTRLPIAWAHTDGLHGPIRLGDELRVWIEH 491

Query: 89  -----------------EIQRMIGRALRSVVDLSALG-----SRQIIIDCDVIQADGGTR 126
                            E Q +    L     L+ L         + ++ +V+ +DG T 
Sbjct: 492 KALDPTGFLLTNRLVFWERQWLSAGTLAEKALLAVLPPEGEFPYTVRVNSEVMASDGSTS 551

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLDYGEDSTI 185
            A++ G  +AL D    + +      +  V +      + G +  Y I+ D+   ED   
Sbjct: 552 MASVCGGSMALMDAGIPVREHVAGVSVGLVSE---VDQTTGDISSYRILTDILGLEDHLG 608

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D+D     T  G I  +Q   + A    D     L  A+     ++      IS+
Sbjct: 609 DMDFKIAGTRRG-ITAIQLDIKPAGIPLDIICESLEPARKARNQILDRMDQEISS 662



 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 77/234 (32%), Gaps = 39/234 (16%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNTKHGWITAEYGMLP 67
           R IS       ++A GS ++   DTH+L     A   E V  ++       +T +Y    
Sbjct: 70  RVISFETGKMARFANGSVVISMDDTHVLSTVAAAKSSEPVRDFLP------LTVDYQEKQ 123

Query: 68  RSTG----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
            + G      ++RE   G    R     R+I R +R +         QI+++  VI +DG
Sbjct: 124 YAQGVIPTTYMRRE---GAPKERELLCGRIIDRPIRPLFPPGFYHEVQIMVN--VISSDG 178

Query: 124 --GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
                  A   +  AL                     G +  I  G + G  +++    E
Sbjct: 179 KQDPDVMAANASSAAL-------------MLSDIPWNGPIGVIRVGRIDGNFVLNPTVDE 225

Query: 182 DSTIDVDANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
                 D N V        + +   A     ++    A + LA       I  Q
Sbjct: 226 --LGLSDLNLVYACSRDKTLMIDVQARE--ITERDLQAGMKLAHAEAVKCINPQ 275


>gi|187610325|sp|Q6MDI2|PNP_PARUW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 697

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 86/234 (36%), Gaps = 26/234 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMW--IRNTKH 56
           +R  GR    +R I + + +   A GS L   G+T  L   T         +  +    +
Sbjct: 315 VRSDGRTSTDIRFIDIEQSLLPRAHGSSLFTRGETQALAVCTLGGASMAQRFEDLEGEGN 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P S G   +  A   R+ G      ++  RAL +V+         I ++ 
Sbjct: 375 NRFYLQYSFPPYSVGEVGRVGAPGRREIGHG----KLAERALMAVIPTKEQFPYTIRLES 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++ +++G +  A + G  +AL D                 +K  VA I+ G++       
Sbjct: 431 NITESNGSSSMATVCGGCLALMDAGVA-------------IKRPVAGIAMGLILENERFI 477

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED+  D+D       +G I   Q   +    + +     L  AK+ 
Sbjct: 478 ILSDILGIEDALGDMDFKVTGDQNG-ITAFQMDIKVEGITIEIMRVALKQAKEG 530



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 79/225 (35%), Gaps = 27/225 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY----GMLP 67
           EI      +++ A G+ +V+ G+T + TTA      P     T    +  +Y        
Sbjct: 14  EIIFETGKIARQAGGAVVVRCGETVVFTTAC---AAPNADSTTDFLPLRVDYQEKFSSAG 70

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
           ++ G  +KRE   GR   +   + R+I R +R + +       Q++              
Sbjct: 71  KTLGGFIKRE---GRPTEKEVLVSRLIDRPIRPMFEEGYYNEVQLLSFVWSYDGINSPEP 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AI GA  AL                   L   V A+  G +    IV+    +     +
Sbjct: 128 LAICGASAALV-------------ISDIPLIKPVGAVRIGFIDAQFIVNPTIEQQKQSKL 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           D     T+   ++ ++G  +    ++D     + +    I  + +
Sbjct: 175 DLLIAGTEEA-VLMIEGFCD--FLTEDQVLEAIEIGHRSIKTICQ 216


>gi|295663905|ref|XP_002792505.1| 3' exoribonuclease family [Paracoccidioides brasiliensis Pb01]
 gi|226279175|gb|EEH34741.1| 3' exoribonuclease family [Paracoccidioides brasiliensis Pb01]
          Length = 296

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 87/266 (32%), Gaps = 30/266 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN---TKHG 57
           +RL GR+ N++R +      +    GS  +  G+T ++       +           +  
Sbjct: 14  LRLDGRRWNELRLMQAQISTNPATSGSSYLAMGNTVVICMVHGPAEGRRSEATGPAREGA 73

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGR-----SQEIQRMIGRALRSVVDLSALGSRQI 112
            I+    +   S  +R K+   +G  GG      S ++   +  A +  +         I
Sbjct: 74  VISVAVNIAGFSGVDRKKKSLAAGGGGGGGDRQASTDLAVALRDAFQPHLHTHLYPHSTI 133

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS----CGM 168
            ++  V+ +DG    A I    +AL D    M        +    +    A       G 
Sbjct: 134 SLNISVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPATPEMKRVGG 193

Query: 169 LCG--YPIVDLDYGEDSTI--DVDANFVMTDSGH-----------IVEVQGSAERATFSQ 213
           +     P++D+   E+  +     AN     SGH           +  VQ     +    
Sbjct: 194 INESLDPLLDMSMPEEQELPFMTVANSNPAPSGHDSMDDEEDNQMLSVVQM---ESGVHI 250

Query: 214 DHFFAMLNLAKDRIADLIKLQKDVIS 239
            +   M  +  D    + ++   VI 
Sbjct: 251 SYLETMFAVGLDGCKQVREILNGVIK 276


>gi|317057303|ref|YP_004105770.1| polyribonucleotide nucleotidyltransferase [Ruminococcus albus 7]
 gi|315449572|gb|ADU23136.1| polyribonucleotide nucleotidyltransferase [Ruminococcus albus 7]
          Length = 705

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 83/223 (37%), Gaps = 29/223 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHL--LTT---ATLEEKVPMWIRNTKH 56
           R+ GR  +++R ++    V     GS +   G T +  + T    +  +K+      T  
Sbjct: 314 RVDGRGIDEIRPLAAEVGVLPRVHGSGIFTRGQTQVMTICTLGPVSDAQKLDGLDEETSK 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++  +Y     S G          R+ G       +  RAL  V+         I    
Sbjct: 374 RYMH-QYNFPSYSVGETRPSRGPGRREIGHG----ALAERALVPVLPSVDEFPYAIRCVS 428

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V+ ++G T   +I G+ +AL D                 +K  VA ISCG++       
Sbjct: 429 EVLSSNGSTSQGSICGSTLALMDAGV-------------PIKEPVAGISCGLITKEDGSW 475

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
             +VD+   ED   D+D     T +G I  +Q   +    + D
Sbjct: 476 MTMVDIQGLEDFYGDMDFKVGGTKNG-ITAIQVDIKVDGLTMD 517



 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 77/235 (32%), Gaps = 33/235 (14%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    +   A GSC V++G+T ++   T      E V  +  +          G +
Sbjct: 15  RPVVVETGKTCGLANGSCWVRYGETVVMANVTASKKPREGVDFFPLSVDFEEKMYAVGRI 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+  KRE   G+   ++    R + R +R +          +++    +  D    
Sbjct: 75  P---GSFTKRE---GKASDKAILTSRCVDRPIRPLFPKDMRNDVTVVMTVLAVDPDNSPE 128

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              +                            G VA+I+ G + G  +++     +    
Sbjct: 129 ITGMI-------------AAAIAISISDIPWNGPVASINVGYVDGELVLNPTL--EQRAK 173

Query: 187 VDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK----LQKD 236
            + N  V   +  IV ++  A       D     +      I  +++    +QK+
Sbjct: 174 NELNLTVAGSADKIVMIEAGANEIP--DDLMLKAIETGHTEIKKMVEFIKGIQKE 226


>gi|32490971|ref|NP_871225.1| polynucleotide phosphorylase/polyadenylase [Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis]
 gi|81741772|sp|Q8D2Y0|PNP_WIGBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|25166177|dbj|BAC24368.1| pnp [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 705

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 28/249 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR E+ +R + +   +     GS L   G+T  L T TL  +        +   K  
Sbjct: 315 RIDGRTEDMVRNLDIHLGILPRTHGSSLFTRGETQALVTTTLGTERDAQNIDDLVGDKID 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P   G      +   R+ G      ++  R + +V+ D+       I I  
Sbjct: 375 RFLFHYNFPPYCVGEVGIISSPKRREIGHG----KLAKRGMLAVMPDIDKFP-YTIRIVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++ +++G +  A++ GA ++L D                 +   VA I+ G++       
Sbjct: 430 EITESNGSSSMASVCGASLSLMDAGV-------------PISSSVAGIAMGLIKEKDKFV 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D   + T  G +  +Q   +    + +     L+ AK+   +++ 
Sbjct: 477 VLTDILGDEDYLGDMDFKVMGTREG-VTALQMDIKIEGITSEILQVSLDKAKNARINILN 535

Query: 233 LQKDVISNE 241
               VI   
Sbjct: 536 EMDKVIKKP 544



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 68/198 (34%), Gaps = 25/198 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPR 68
           +++    +++ A  + +V+  DT +  T   ++K       +     +   T   G  P 
Sbjct: 16  VTIETGMIARQATSAVMVRMDDTSVFVTVVADKKEKLGQKFFPLTVNYQERTYSIGRFP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR       + R+I R++R +   +     QII     +         
Sbjct: 75  --GGFFRRE---GRPNENEVLVSRLIDRSVRPLFPKNFFNDIQIIATVMSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           +I GA  AL                    K  + +   G +    I++    E     +D
Sbjct: 130 SIIGASAALSLSGL-------------PFKCPIGSSRIGYIDNKYILNPTTSELIDSKLD 176

Query: 189 ANFVMTDSGHIVEVQGSA 206
              V   S  ++ V+ S+
Sbjct: 177 M-IVSGSSNAVLMVESSS 193


>gi|171778426|ref|ZP_02919584.1| hypothetical protein STRINF_00435 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282827|gb|EDT48251.1| hypothetical protein STRINF_00435 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 730

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 87/247 (35%), Gaps = 28/247 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH---LLTTATLEEK--VPMWIRNTK 55
           +R  GR+ +++R +           GS L   G T    +LT A + E   V       K
Sbjct: 317 IRPDGRRIDEIRPLDAEIDFLPKIHGSGLFTRGQTQALSVLTLAPMGETQIVDGLGDEYK 376

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y     S G   +     G  G R      +  RAL  V+         I + 
Sbjct: 377 KRFLH-HYNFPQFSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLV 431

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V++++G +  A+I    +AL                   +K  VA I+ G++      
Sbjct: 432 AEVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNY 478

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I  +Q   +    +       L  AK    +++
Sbjct: 479 TILTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILKEALAQAKKARFEIL 537

Query: 232 KLQKDVI 238
            L +  I
Sbjct: 538 DLIEATI 544



 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 86/232 (37%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67
           R   +    V+K A G+ ++++G++ +L+ A + +K+     +     +       G  P
Sbjct: 13  RPFVVEIGQVAKQANGAAVIRYGESTVLSAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R +         Q+I        D     
Sbjct: 73  ---GGFNKRE---GRPTTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +    + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVAYIDGEFIINPSAEQKEASLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S+D     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKEA-INMVESGAKE--LSEDIMLEALLKGHEAVQELIAFQEEIVA 222


>gi|326508906|dbj|BAJ86846.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 306

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 96/274 (35%), Gaps = 47/274 (17%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R+  + R  ++       A GS LV+ GDT +L +  LE   P        G + 
Sbjct: 39  VRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPP-AETPDQGSVA 97

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD------LSALG------ 108
            E+ M P  +   + R        GR  E   +I +AL  V+       L  L       
Sbjct: 98  VEFHMPPICSP--LVRP-------GRPAEAAPVISKALEDVLMSSGMLNLKELCLISGKA 148

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS-------------------- 148
           S    +D   + ADG    AA+     A       +                        
Sbjct: 149 SWVAYLDVYCLNADGSLFDAALISVVAAFTHLEIPLVSVGDDGRVFTVGGNEGKTKYELV 208

Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
           N+ +    L      ++C +     +VD    E+S I+     V+  SG +V +Q     
Sbjct: 209 NREKRKLTLGDIPFPLTCALHKDSILVDPTAEEESIIETSVTVVLDSSGRLVSIQKPG-G 267

Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
              S     A + LAK+R   L    K+++++ +
Sbjct: 268 GVTSMAAIKACIGLAKERGQKL----KEILTDSI 297


>gi|292670908|ref|ZP_06604334.1| polyribonucleotide nucleotidyltransferase [Selenomonas noxia ATCC
           43541]
 gi|292647529|gb|EFF65501.1| polyribonucleotide nucleotidyltransferase [Selenomonas noxia ATCC
           43541]
          Length = 700

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 28/223 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-----LEEKVPMWIRNTK 55
           +R  GR  +++R +S    +   A GS L   G T +L T T      +E++   + +  
Sbjct: 321 IRPDGRALDEIRPVSCEVGILPRAHGSGLFTRGQTQVL-TVTTLGSIGDEQIIDGLGSET 379

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                 +Y     S G      +   R+ G       +  RAL  ++         I + 
Sbjct: 380 TKHYLHQYNFPGYSVGEARPMRSPGRREIGHG----ALAERALFPMIPSIEEFPYTIRLV 435

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            ++++++G +   +I G+ ++L                   +K  V+ I+ G++      
Sbjct: 436 SEILESNGSSSMGSICGSTLSLMCAGV-------------PIKRPVSGIAMGLVRDGDNY 482

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
             + D+   ED+  D+D     T  G I  +Q   + A  ++D
Sbjct: 483 SILTDIQGMEDALGDMDFKVAGTSKG-ITAIQMDIKIAGITRD 524



 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 83/229 (36%), Gaps = 27/229 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R++ +      K A G+ LV++GDT +L TAT      E V  +     +       G +
Sbjct: 22  RKLVIEHGKMAKQANGAVLVRYGDTVVLVTATASSAPREGVDFFPLTVDYEEKMYAVGKI 81

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR    +    R+I R +R +         QI+     ++ D    
Sbjct: 82  P---GGFIKRE---GRPSNDAILCARLIDRPIRPLFPDGFRNDVQIVATVLSVEQDNPPE 135

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            AA+ GA  AL                     G +A +  G + G  I++    E     
Sbjct: 136 IAAMIGASCAL-------------TVSDIPFMGPIAGVRVGYIDGEFIINPT--EQQRSV 180

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            + N  +  S   V +  +      S++     +      I  L++ Q+
Sbjct: 181 SELNLAVAGSYDAVMMVEAG-ANELSEEVVLDAILFGHAEIRRLVEFQQ 228


>gi|326430537|gb|EGD76107.1| hypothetical protein PTSG_00813 [Salpingoeca sp. ATCC 50818]
          Length = 219

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 76/245 (31%), Gaps = 42/245 (17%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+  ++R +     +    +GS    FGD+ ++        VP+         +  
Sbjct: 5   RVDGRKAMELRPMQCDLALLDKPDGSASFSFGDSSVMAAVYGPRDVPLSREKHDRSTVEV 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            +   P         E  +  Q   ++     +  AL S+ D        I +    +  
Sbjct: 65  AWHSAP-------DNEQGAALQSHLTE----FVVNALASIHD---FPRSAIRVVIQELNN 110

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGG    AI    +AL D    +                 AA SC ++ G  I+D    E
Sbjct: 111 DGGMLACAINATCLALMDAGISL-------------TAMFAAASCAVVDGQLILDPTLIE 157

Query: 182 DSTIDVDANFVMTD---------SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            +  +     V+T          +   V +  S      +      +L   +   A +  
Sbjct: 158 QNKANA---VVVTGACKQASKVNAAEFVALHSSG---PCAPKQMVTVLEAVESATAAVAA 211

Query: 233 LQKDV 237
             +  
Sbjct: 212 FLRTA 216


>gi|322411051|gb|EFY01959.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 714

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 86/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLAPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +  A   R+ G       +  RAL  V+         I +  
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + A  +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILD 538

Query: 233 LQKDVISNE 241
           + +  I+  
Sbjct: 539 VIEATIAEP 547



 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 86/231 (37%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
            + +    V+K A G+ +V++G++ +LT A + +K      +     +       G  P 
Sbjct: 14  PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR    +    R+I R +R +         Q+I        +     A
Sbjct: 73  --GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVISTVLSYDENASAPMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +  G + G  I++ D  +     ++
Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                +    I  V+  A+    S+D     L      I +LI  Q+ +++
Sbjct: 175 LTVAGSKEA-INMVESGAKE--LSEDIMLEALLKGHQAIQELIIFQEQIVA 222


>gi|218437998|ref|YP_002376327.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. PCC
           7424]
 gi|226702644|sp|B7KIQ3|PNP_CYAP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|218170726|gb|ACK69459.1| Polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7424]
          Length = 718

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 94/233 (40%), Gaps = 26/233 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLP 67
           R+I L   +    A GS L++ GDT +L TAT     E V        +       G +P
Sbjct: 13  RDIRLKLGLLAPQAGGSVLIQSGDTAVLVTATKAASREGVDFLPLTVDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   GR   ++  I R+I R LR +         Q+I     +  +     
Sbjct: 73  ---GGFLRRE---GRPPEKAILISRLIDRPLRPLFPHWLRDDIQVIATTLSMDEEVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA +A+                     G +AA+  G++    I++  Y E +T D+
Sbjct: 127 LAVTGASLAVILA-------------EIPFFGPMAAVRVGLVGDDFIINPTYKEINTGDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     +  G +V V+  A +    +      ++   + + DLI  Q+DV+  
Sbjct: 174 DLVVAGSPDG-VVMVEAGANQ--LPEQDIIEAIDFGYEAVRDLIAAQQDVMET 223



 Score = 95.5 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 84/234 (35%), Gaps = 28/234 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNT 54
           +R+ GRQ +Q+R IS    +      GS L   G T +L+ ATL            +   
Sbjct: 323 VRVDGRQLDQVRPISCRVGLLPPRVHGSGLFCRGLTQVLSIATLGTPGDAQELADDLHPE 382

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y   P S G      +   R+ G       +  RA+  V+         + +
Sbjct: 383 DEKRYLHHYNFPPYSVGETRPMRSPGRREIGHG----ALAERAILPVLPTQQEFPYVVRV 438

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V+ ++G T   ++ G+ +AL D                 +   V+  + G++     
Sbjct: 439 VSEVLSSNGSTSMGSVCGSTLALMDAGV-------------PIIKPVSGAAMGLIKDGDE 485

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
              + D+   ED   D+D     TD+G I  +Q   +    S D     +  A+
Sbjct: 486 VRILTDIQGIEDFLGDMDFKVAGTDNG-ITALQMDMKITGLSMDIVAKAIEQAR 538


>gi|303323507|ref|XP_003071745.1| 3' exoribonuclease family, domain 1 containing protein
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240111447|gb|EER29600.1| 3' exoribonuclease family, domain 1 containing protein
           [Coccidioides posadasii C735 delta SOWgp]
 gi|320035116|gb|EFW17058.1| exosome complex endonuclease 1/ribosomal RNA processing protein
           [Coccidioides posadasii str. Silveira]
          Length = 298

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 83/265 (31%), Gaps = 25/265 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW--IRNTKHGW 58
           +RL GR+ N++R +      +  + GS  +  G+T ++       +              
Sbjct: 14  LRLDGRRWNELRLVQAQISTNPASSGSSYLAMGNTVVVCNVHGPAEGKRSETAGGGGGAV 73

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGR--------SQEIQRMIGRALRSVVDLSALGSR 110
           ++    +   +  +R K+  ++G  GG         + E+   +  A +  +        
Sbjct: 74  VSVVVNIAGFAGVDRKKKSMMAGGGGGGGGGGDRQATTELSSALRDAFQPHLHTHIYPHS 133

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS-----NKFQLSQVLKGHVAAIS 165
            I +   V+ +DG    A I    +AL D    M              +      +A   
Sbjct: 134 TISLHVSVLSSDGSIFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAAELAQSR 193

Query: 166 CGMLCG--YPIVDLDYGEDSTIDVDA-----NFVMTDSGHIVEVQGSA---ERATFSQDH 215
            G +     P++DL   E+  +                    E Q  +     +     +
Sbjct: 194 VGGINESLDPLLDLSRPEELELPHMTVANTNPVAGASEEGEEEEQMLSIVRMESGVHISY 253

Query: 216 FFAMLNLAKDRIADLIKLQKDVISN 240
              M  +  D    + ++   V+ +
Sbjct: 254 LETMFAVGIDGCKQVREILNGVLKS 278


>gi|158819077|ref|NP_001103659.1| exosome component 6 [Bos taurus]
 gi|157743163|gb|AAI53218.1| EXOSC6 protein [Bos taurus]
          Length = 272

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 80/246 (32%), Gaps = 30/246 (12%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---------- 55
           R   ++R +     +   A+GS  ++ G T +L   +         R             
Sbjct: 31  RDPARLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRPAEGGERGGGPAGAGGEAPA 90

Query: 56  --HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
              G +  ++   P S     +R A  G  GG  +E+   +  AL   V L      Q+ 
Sbjct: 91  ALRGRLLCDFRRAPFSG---RRRRAPPG--GGEERELALALQEALEPAVRLGRYPRAQLE 145

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +   +++  G    AA+T A +AL D    M D      LS+      A           
Sbjct: 146 VSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSRAPAPAPA----------W 195

Query: 174 IVDLDYGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++D    E+           M     +  V GS E      + +   + L  +    L  
Sbjct: 196 LLDPTLLEEERASAGLTVALMPVLNQVAGVLGSGEGGP--TESWAEAVRLGLEGCQRLYP 253

Query: 233 LQKDVI 238
           + +  +
Sbjct: 254 VLQQCL 259


>gi|288925349|ref|ZP_06419283.1| polyribonucleotide nucleotidyltransferase [Prevotella buccae D17]
 gi|288337820|gb|EFC76172.1| polyribonucleotide nucleotidyltransferase [Prevotella buccae D17]
          Length = 746

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 88/251 (35%), Gaps = 30/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +RL GR   ++R I           GS L + G+T  L+T TL  K+   + +      +
Sbjct: 289 LRLDGRATTEIRPIWSEVSPLPMPHGSALFQRGETMSLSTCTLGTKLDEKLVDDVLMKGY 348

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG    +  V  R+ G       +  R L+  +         + +  
Sbjct: 349 QRFLLHYNFPPFSTGEAKAQRGVGRREVGHGH----LAWRGLKDQIPADF--PYTVRLVS 402

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171
            +++++G +  A +    +AL D    M             K  V+ I+ G++       
Sbjct: 403 QILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVSGIAMGLIKNPGEDK 449

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G +   Q   +    S +     L  AK     +
Sbjct: 450 YAILSDILGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHI 508

Query: 231 IKLQKDVISNE 241
           +    + IS  
Sbjct: 509 LNKMMETISEP 519



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 79/212 (37%), Gaps = 21/212 (9%)

Query: 32  FGDTHLLTTATL-EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI 90
            G+T LL T    ++ VP             +Y    R  G   KRE   G+        
Sbjct: 1   MGNTVLLATVCAAKDAVPGTDFMPLQVDYREQYSAAGRFPGGFTKRE---GKANDDEILT 57

Query: 91  QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK 150
            R++ RALR +   +     ++ +   ++ ADG           V   D L      +  
Sbjct: 58  SRLVDRALRPLFPSN--YHAEVYVQVMLLSADG-----------VDQPDALAGFAASAAM 104

Query: 151 FQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERAT 210
                     ++ +    + G  +++  + + +  D+D     T   +I+ V+G  E   
Sbjct: 105 ACSDIPFDYPISEVRVARVGGEYVINPTFQQMADADMDLMVGATKD-NIMMVEG--EMKE 161

Query: 211 FSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            S+      L +A + I  + +LQ++ +S E+
Sbjct: 162 VSEQDLIGALKVAAEAIKPMCELQEE-LSKEL 192


>gi|147898885|ref|NP_001085439.1| exosome component 9 [Xenopus laevis]
 gi|49114791|gb|AAH72749.1| SCL75 protein [Xenopus laevis]
          Length = 431

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 92/260 (35%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I +    + Y  G C+V+ G T +L   + E  V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIKIAFG-TDY--GCCIVELGKTRVLCQVSCEI-VTPKMSRPTEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              + P +           GRQ   S ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLEISPMAFPG-----FEMGRQSELSVKLNRLLERCLRNSKCIDTESLCVAAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF----------QLSQVLKGHVAA 163
           +D  ++  +G    AA   A   L    +       +            +   +      
Sbjct: 134 VDLHLLNHEGNIIDAASIAAIAGLCHFRRPDVSVQGEEVTVYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGMLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       ++       
Sbjct: 194 VSFAFFQQGIYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKEQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++ ++ +L +  + N+
Sbjct: 253 VAGVKVGEITELIQKALEND 272


>gi|89095210|ref|ZP_01168133.1| polyribonucleotide nucleotidyltransferase [Oceanospirillum sp.
           MED92]
 gi|89080507|gb|EAR59756.1| polyribonucleotide nucleotidyltransferase [Oceanospirillum sp.
           MED92]
          Length = 701

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 91/246 (36%), Gaps = 26/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I +   V +   GS L   G+T  + T TL       I +   G    
Sbjct: 317 RIDGRDTKTVRGIDVQIDVLQGTHGSALFTRGETQAIATCTLGTARDQQIIDAIEGERKD 376

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      R+  R + +V+         I I  +
Sbjct: 377 PFMLHYNFPPYSVGECGRMGGAGRREIGHG----RLARRGVAAVLPTQEEFPYTIRIVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++ GA +++ D                 LK  VA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGASLSMMDAGV-------------PLKAPVAGIAMGLVKEGDKFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G +  +Q   +    +++     L  A +    ++K 
Sbjct: 480 LTDILGDEDHLGDMDFKVAGTERG-VTALQMDIKITGITEEIMDIALEQAYEARVHILKE 538

Query: 234 QKDVIS 239
              VI 
Sbjct: 539 MATVIG 544



 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 81/232 (34%), Gaps = 32/232 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLP 67
           E+++    V++ A GS LVK G   +L T       +     +  +  +       G +P
Sbjct: 15  EVTIETGRVARQATGSVLVKMGGNEVLCTVVGAKEAKAGQDFFPLSVHYQEKYYAVGRIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125
              G   KREA   R   +     R+I R +R +     +   Q++  C V+ AD     
Sbjct: 75  ---GGFFKREA---RPSEKETLTSRLIDRPIRPLFPKGYMNEVQVV--CTVVSADKKNDP 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDST 184
             AA+ G   AL                    +G + A   G       +++  + +  T
Sbjct: 127 DIAAMIGTSAALAISGI-------------PFQGPIGAARVGFTEDAGYLLNPSFEQLQT 173

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            ++D     T    ++     +E    S+D     +  A   +  +I    +
Sbjct: 174 SELDMVVAGTADAVLMV---ESEAQELSEDEMLGAVLFAHQEMQVVINAVNE 222


>gi|21911212|ref|NP_665480.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS315]
 gi|28896590|ref|NP_802940.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           SSI-1]
 gi|81758877|sp|Q8K5T4|PNP_STRP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|21905424|gb|AAM80283.1| putative polynucleotide phosphorylase alpha chain [Streptococcus
           pyogenes MGAS315]
 gi|28811844|dbj|BAC64773.1| putative polynucleotide phosphorylase, alpha chain [Streptococcus
           pyogenes SSI-1]
          Length = 710

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 86/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLAPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +  A   R+ G       +  RAL  V+         I +  
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + A  +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILD 538

Query: 233 LQKDVISNE 241
           + +  I+  
Sbjct: 539 VIEATIAEP 547



 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 86/232 (37%), Gaps = 28/232 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK----VPMWIRNTKHGWITAEYGMLP 67
            + +    V+K A G+ +V++GD+ +L TAT+  K       +     +       G  P
Sbjct: 14  PLVVEVGQVAKQANGATVVRYGDSTVL-TATVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++ D  +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     +    I  V+  A+    S+D     L      I +LI  Q+ +++
Sbjct: 174 ELTVAGSKEA-INMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 222


>gi|323343826|ref|ZP_08084053.1| polyribonucleotide nucleotidyltransferase [Prevotella oralis ATCC
           33269]
 gi|323095645|gb|EFZ38219.1| polyribonucleotide nucleotidyltransferase [Prevotella oralis ATCC
           33269]
          Length = 791

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 88/250 (35%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           RL GR+ +++R I           GS + + G+T  L+T TL  K+   + +      + 
Sbjct: 325 RLDGRKTDEIRPIWCEVSALPMPHGSAIFQRGETMSLSTCTLGTKMDEKLVDDVLEKGYQ 384

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  R L+  +         + +   
Sbjct: 385 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRGLKGQIPADF--PYTVRLVSQ 438

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D    M                V+ I+ G++        
Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGVPMAK-------------PVSGIAMGLIKNPGEEKY 485

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G +   Q   +    S +     L  AK     ++
Sbjct: 486 AVLSDILGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFEILEKALMQAKAGREYIL 544

Query: 232 KLQKDVISNE 241
               + IS  
Sbjct: 545 GKMMETISEP 554



 Score = 95.5 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 91/241 (37%), Gaps = 28/241 (11%)

Query: 3   LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       IS+    V+K A+G+ +++ G+T LL T    ++ VP            
Sbjct: 11  PDGRT------ISIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQVDYR 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y    R  G   KRE   G+         R++ RALR +   +     ++ +   ++ 
Sbjct: 65  EQYSAAGRFPGGFTKRE---GKASDSEILTSRLVDRALRPLFPSN--YHAEVYVQVMLLS 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           V   D L      +          G ++ +    + G  +VD  + 
Sbjct: 120 ADG-----------VDQPDALAGFAASAAMACSDIPFDGPISEVRIARINGEYVVDPTFQ 168

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +    D+D     T   +I+ V+G  E    S+      L +A D I  +  LQ + +S 
Sbjct: 169 QMKEADMDIMVGATKD-NIMMVEG--EMNEVSEQDLIDALKVAADAIKPMCDLQTE-LSK 224

Query: 241 E 241
           E
Sbjct: 225 E 225


>gi|300780976|ref|ZP_07090830.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           genitalium ATCC 33030]
 gi|300532683|gb|EFK53744.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           genitalium ATCC 33030]
          Length = 759

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 90/249 (36%), Gaps = 22/249 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
            R+ GR    +R++ +   +   A GS L + G+T +L   TL+    E+    +     
Sbjct: 370 FRIDGRGVTDIRDLEVEVELIPRAHGSSLFERGETQILGVTTLDMLKMEQQLDSLHPETS 429

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 430 KHYIHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERALIPVIPSKEDFPYTIRQVS 485

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + + ++G T   ++  + ++L++    +            + G    +  G + G     
Sbjct: 486 EALGSNGSTSMGSVCASTLSLYNAGVPLAA---------PVAGIAMGLVSGEVDGETKYV 536

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T    I  +Q   +      D   + L+ AK+    ++ 
Sbjct: 537 ALTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPSDVLASALDQAKEARETILD 595

Query: 233 LQKDVISNE 241
              +VI   
Sbjct: 596 TMAEVIEGP 604



 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 79/260 (30%), Gaps = 47/260 (18%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      +++ A GS      D T LL+T T      E    +             G 
Sbjct: 37  RTIRFETGQLARQAGGSVTTYLDDDTMLLSTVTASNQPREGFDFFPLTVDVEERMYAAGK 96

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q+++       +   
Sbjct: 97  IP---GSFFRRE---GRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVVTVMSWNPEEYY 150

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI GA  A       +       +++ +              G  +   ++ E    
Sbjct: 151 DVVAINGASAATQLSGLPVSGAVGGVRMALIADDQ-------HPEGQWVAFPNH-EQHEA 202

Query: 186 DV--------------------DANFVMTDSG----HIVEVQGSAERATFSQDHFFAMLN 221
            V                    D   +M ++G     +  + G A     ++      L 
Sbjct: 203 AVFEMVVAGRIVEKKKGRKKVQDVAIMMVEAGAGANAVKLIDGGAPAP--TERTVAEGLE 260

Query: 222 LAKDRIADLIKLQKDVISNE 241
            AK  I  L + Q + ++++
Sbjct: 261 AAKPFIQTLCEAQ-NALADK 279


>gi|139474436|ref|YP_001129152.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           str. Manfredo]
 gi|187611301|sp|A2RGH2|PNP_STRPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|134272683|emb|CAM30954.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           str. Manfredo]
          Length = 710

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 86/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLAPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +  A   R+ G       +  RAL  V+         I +  
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + A  +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILD 538

Query: 233 LQKDVISNE 241
           + +  I+  
Sbjct: 539 VIEATIAEP 547



 Score = 78.6 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 86/231 (37%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
            + +    V+K A G+ +V++GD+ +LT A + +K      +     +       G  P 
Sbjct: 14  PLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR    +    R+I R +R +         Q+I        +     A
Sbjct: 73  --GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPVA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +  G + G  I++ D  +     ++
Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                +    I  V+  A+    S+D     L      I +LI  Q+ +++
Sbjct: 175 LTVAGSKEA-INMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 222


>gi|50915014|ref|YP_060986.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS10394]
 gi|81371590|sp|Q5X9W0|PNP_STRP6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|50904088|gb|AAT87803.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           MGAS10394]
          Length = 710

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 86/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSILTLAPMGETQIIDGLAPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +  A   R+ G       +  RAL  V+         I +  
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + A  +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILD 538

Query: 233 LQKDVISNE 241
           + +  I+  
Sbjct: 539 VIEATIAEP 547



 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 85/231 (36%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
            + +    V+K A G+ +V++G++ +LT A + +K      +     +       G  P 
Sbjct: 14  PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR    +    R+I R +R +         Q+         +     A
Sbjct: 73  --GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVTNTVLSYDENASAPMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +  G + G  I++ D  +     ++
Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                +    I  V+  A+    S+D     L      I +LI  Q+ +++
Sbjct: 175 LTVAGSKEA-INMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 222


>gi|254503471|ref|ZP_05115622.1| 3' exoribonuclease family, domain 2 [Labrenzia alexandrii DFL-11]
 gi|222439542|gb|EEE46221.1| 3' exoribonuclease family, domain 2 [Labrenzia alexandrii DFL-11]
          Length = 711

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 92/247 (37%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  + +R+IS    +   A GS L   G+T  L  ATL           +  T   
Sbjct: 318 RIDGRDLSTVRQISSEVGILSRAHGSSLFTRGETQGLVVATLGTGEDEQFIDLLEGTVKS 377

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++         + +  +
Sbjct: 378 HFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAINPMLPAHHEFPYTLRVVSE 433

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A + G  ++L D                 LK  VA I+ G++  G     
Sbjct: 434 ITESNGSSSMATVCGTSLSLMDAGV-------------PLKAPVAGIAMGLIKEGERFAV 480

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     +++G I  +Q   +    +++     L  AK     ++  
Sbjct: 481 LSDILGDEDHLGDMDFKVAGSENG-ITALQMDIKIDGITEEIMKVALEQAKGGRIHILGE 539

Query: 234 QKDVISN 240
             + I+ 
Sbjct: 540 MANAITE 546



 Score = 84.8 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 69/227 (30%), Gaps = 27/227 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + L    V++ A+GS +  +G+T +L T  +  K P          +T  Y     + 
Sbjct: 15  RPLILETGKVARQADGSVMATYGETKVLATV-VSAKAPR--AGQDFFPLTVNYQEKAFAA 71

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G       KRE   GR         R+I R +R +         Q++I       +    
Sbjct: 72  GKIPGGYFKRE---GRPSEHETLTSRLIDRPIRPLFADGYKNDTQVVITVLSHDMENAPD 128

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A  AL                     G +     G + G  +++    +     
Sbjct: 129 ILAMVAASAAL-------------TLSGVPFMGPIGGARVGYINGEYVLNPLVDDMPESA 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +D     T    ++     +E     ++     +         +I  
Sbjct: 176 LDLVVAGTSDAVLMV---ESEAKELDEETMLGAVMFGHKGFQTVIDA 219


>gi|332522644|ref|ZP_08398896.1| polyribonucleotide nucleotidyltransferase [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332313908|gb|EGJ26893.1| polyribonucleotide nucleotidyltransferase [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 742

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 85/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 328 IRPDGRKIDEIRPLDAQIDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDEEYK 387

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +  A   R+ G       +  RAL  V+         I +  
Sbjct: 388 KRFMHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALAQVLPSLEEFPYAIRLVA 443

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 444 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 490

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    +       L  AK    +++ 
Sbjct: 491 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEALAQAKKARFEILD 549

Query: 233 LQKDVISNE 241
           + +  I+  
Sbjct: 550 VIEATIATP 558



 Score = 75.1 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 87/231 (37%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
            + +    V+K A G+ +V++G++ +LT A + +K      +     +       G  P 
Sbjct: 25  PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP- 83

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR    +    R+I R +R +         Q+I        +     A
Sbjct: 84  --GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEIQVINTVLSYDENASAPMA 138

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +  G + G  I++ D  +     ++
Sbjct: 139 AMFGSSLALS-------------ISDIPFNGPIAGVQVGYIDGQFIINPDKAQMEASLLE 185

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                +    I  V+  A+    S+D     L      I +LI  Q+++++
Sbjct: 186 LTVAGSKEA-INMVESGAKE--LSEDIMLEALLKGHQAIQELITFQEEIVA 233


>gi|94989291|ref|YP_597392.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS9429]
 gi|122987076|sp|Q1JJX5|PNP_STRPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|94542799|gb|ABF32848.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           MGAS9429]
          Length = 710

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 86/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSILTLAPMGETQIIDGLAPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +  A   R+ G       +  RAL  V+         I +  
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + A  +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILD 538

Query: 233 LQKDVISNE 241
           + +  I+  
Sbjct: 539 VIEATIAEP 547



 Score = 78.2 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 86/231 (37%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
            + +    V+K A G+ +V++GD+ +LT A + +K      +     +       G  P 
Sbjct: 14  PLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR    +    R+I R +R +         Q+I        +     A
Sbjct: 73  --GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +  G + G  I++ D  +     ++
Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                +    I  V+  A+    S+D     L      I +LI  Q+ +++
Sbjct: 175 LTVAGSKEA-INMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 222


>gi|71904310|ref|YP_281113.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS6180]
 gi|94991237|ref|YP_599337.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS10270]
 gi|122986981|sp|Q1JEW6|PNP_STRPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|123747743|sp|Q48RA2|PNP_STRPM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|71803405|gb|AAX72758.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           MGAS6180]
 gi|94544745|gb|ABF34793.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           MGAS10270]
          Length = 710

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 86/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSILTLAPMGETQIIDGLAPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +  A   R+ G       +  RAL  V+         I +  
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + A  +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILD 538

Query: 233 LQKDVISNE 241
           + +  I+  
Sbjct: 539 VIEATIAEP 547



 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 86/231 (37%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
            + +    V+K A G+ +V++G++ +LT A + +K      +     +       G  P 
Sbjct: 14  PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR    +    R+I R +R +         Q+I        +     A
Sbjct: 73  --GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +  G + G  I++ D  +     ++
Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                +    I  V+  A+    S+D     L      I +LI  Q+ +++
Sbjct: 175 LTVAGSKEA-INMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 222


>gi|239947698|ref|ZP_04699451.1| polyribonucleotide nucleotidyltransferase [Rickettsia endosymbiont
           of Ixodes scapularis]
 gi|239921974|gb|EER21998.1| polyribonucleotide nucleotidyltransferase [Rickettsia endosymbiont
           of Ixodes scapularis]
          Length = 748

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 89/248 (35%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R+I+    +   A GS L   G+T  L + T    +   I ++  G    
Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S    +  +A S R+ G      ++  RA+  ++         I +  +
Sbjct: 376 RFMLNYIFPPYSVNEVMPMKAPSRREVGHG----KLAWRAINPILPNKVQFPYSIRVVAE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
             +++G +  A +  + +AL                   +K  VA I+ G++        
Sbjct: 432 TTESNGSSSMATVCSSSLALMYAGV-------------PIKAPVAGIAMGLIKEGKKFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   + +          L  A+     +++ 
Sbjct: 479 LSDILGDEDYFGDMDFKVAGTSEG-ITALQMDIKISGVDFKIMKVALEQARLGRLHILEQ 537

Query: 234 QKDVISNE 241
              VIS  
Sbjct: 538 MNKVISKP 545



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 33/229 (14%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           +++ A+G+  VK G++ LL TA +    +E +  +     +  +    G +P   G   K
Sbjct: 23  IARQADGAVTVKMGNSVLLCTAVVAKKAKEGIGFFPLTINYREMAYAAGKIP---GGFFK 79

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--RTAAITGA 133
           RE   G+   R   + R+I R +R +   + +      + C V+  D  T     AI GA
Sbjct: 80  RE---GKASDREVLVSRLIDRPIRPLFHPAFVNET--HVTCSVLSYDPETPVDILAIIGA 134

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
             AL                       VAA   G++ G  +++       T  +D     
Sbjct: 135 SAALS-------------LSPAPYLEIVAASKVGLINGEFVLNPALELLKTSQLDLVVAG 181

Query: 194 T-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           T DS  +VE    +E    S++     +    +    +IK+ K+ ++ E
Sbjct: 182 TSDSVMMVE----SEAHLLSEEQMLEAVKFGFESFQPVIKIIKE-LAEE 225


>gi|307155205|ref|YP_003890589.1| polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7822]
 gi|306985433|gb|ADN17314.1| polyribonucleotide nucleotidyltransferase [Cyanothece sp. PCC 7822]
          Length = 718

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 93/231 (40%), Gaps = 26/231 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           R+I L   +    A GS L++ GDT +L TAT     E V        +       G +P
Sbjct: 13  RDIRLKLGLLAPQAGGSVLIQSGDTAVLVTATKVPGREGVDFLPLTVDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   GR   ++  I R+I R LR +         Q+I     +  +     
Sbjct: 73  ---GGFLRRE---GRPPEKAILISRLIDRPLRPLFPHWLRDDLQVIATTLSMDEEVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA +A+                     G +AA+  G++    I++  Y E +T D+
Sbjct: 127 LAVTGASLAVILA-------------KIPFFGPMAAVRVGLVGDDFIINPTYKEINTGDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           D     +  G +V V+  A +    +      ++   + + DLI  Q DVI
Sbjct: 174 DLVVAGSPEG-VVMVEAGANQ--LPEQDIIEAIDFGYEAVRDLIAAQLDVI 221



 Score = 96.7 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 88/251 (35%), Gaps = 28/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMW-----IRNT 54
           +R+ GR+ +++R IS    +      GS L   G T +L+ ATL            +   
Sbjct: 323 VRVDGRKLDEVRPISCRVGLLPQRVHGSGLFCRGLTQVLSLATLGTPGDAQELADDLHPE 382

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y   P S G      +   R+ G       +  RA+  V+         + +
Sbjct: 383 DEKRYLHHYNFPPYSVGETRPMRSPGRREIGHG----ALAERAITPVLPTQQEFPYVVRV 438

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V+ ++G T   ++ G+ +AL D                 +   V+  + G++     
Sbjct: 439 VSEVLSSNGSTSMGSVCGSTLALMDAGV-------------PITKPVSGAAMGLIKEGDE 485

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     TD+G I  +Q   +    S D     +  A+     +
Sbjct: 486 VRILTDIQGIEDFLGDMDFKVAGTDNG-ITALQMDMKITGLSMDIVAKAIEQARPARLHI 544

Query: 231 IKLQKDVISNE 241
           +     VI   
Sbjct: 545 LDKMLSVIEQP 555


>gi|291562544|emb|CBL41360.1| polyribonucleotide nucleotidyltransferase [butyrate-producing
           bacterium SS3/4]
          Length = 739

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 77/230 (33%), Gaps = 29/230 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWIT 60
           R  GR+ +++R ++    +     GS +   G T +L   TL        +        T
Sbjct: 312 RPDGRRIDEIRPLAAEIDILPRVHGSGMFTRGQTQILNACTLAPLSEAQRLDGLDENETT 371

Query: 61  AE----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         I    
Sbjct: 372 KRYMHHYNFPSFSVGETKPSRGPGRREIGHG----ALAERALVPVLPSEEEFPYAIRTVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + ++++G T  A+I  + ++L                   +K  VA ISCG++ G     
Sbjct: 428 ETMESNGSTSQASICASTLSLMAAGV-------------PIKTMVAGISCGLVTGETDDD 474

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
              + D+   ED   D+D     T  G I  +Q   +    ++      +
Sbjct: 475 YIVLTDIQGLEDFFGDMDFKVGGTHEG-ITAIQMDIKIHGLTRPIIEEAI 523



 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 83/234 (35%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+K A G+  + +GDT +L+TAT      + +  +  + ++       G +
Sbjct: 12  RTLTVEVGRVAKQANGAAFMHYGDTVVLSTATASDKPRDGIDFFPLSVEYEEKLYSVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  +    
Sbjct: 72  P---GGFTKRE---GKASENATLTSRVIDRPMRPLFPKDYRNDVTLDNIVMSVDPECSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  A    G++ G  I++    +    D
Sbjct: 126 LTAMLGSAIA-------------TCISDIPFDGPCAMTQVGLIDGEFIINPTSTQKKVSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    ++ ++  A+     +      +  A +   ++IK    +++ 
Sbjct: 173 LALTVASTRE-KVIMIEAGAKEVP--EQTMINAIFKAHEVNQEIIKFIDRIVAE 223


>gi|71724847|gb|AAZ38885.1| 3' exoribonuclease [Xenopus laevis]
          Length = 431

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 92/260 (35%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I +    + Y  G C+V+ G T +L   + E  V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIKIAFG-TDY--GCCIVELGKTRVLCQVSCEI-VTPKMSRPTEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              + P +           GRQ   S ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLEISPMAFPG-----FEMGRQSELSVKLNRLLERCLRNSKCIDTESLCVAAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF----------QLSQVLKGHVAA 163
           +D  ++  +G    AA   A   L    +       +            +   +      
Sbjct: 134 VDLHLLNHEGNIIDAASIAAIAGLCHFRRPDVSVQGEEVTVYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGMLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       ++       
Sbjct: 194 VSFAFFQQGIYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKEQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++ ++ +L +  + N+
Sbjct: 253 VAGVKVGEITELIQKALEND 272


>gi|242007204|ref|XP_002424432.1| Exosome complex exonuclease RRP43, putative [Pediculus humanus
           corporis]
 gi|212507832|gb|EEB11694.1| Exosome complex exonuclease RRP43, putative [Pediculus humanus
           corporis]
          Length = 276

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 87/259 (33%), Gaps = 26/259 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  ++ R IS+       A+GS +VK G+T ++    LE   P        G++ 
Sbjct: 22  VRPDGRALDECRPISINVNSFHNADGSAIVKIGNTAVVCGVKLELAKPK-AETPDQGYLI 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QI 112
               + P  +G         G     +QE  + +   L     +DL AL          I
Sbjct: 81  PNVDLPPLCSGQYQ-----PGPPCDYAQEATKFVNEILLESQCIDLKALCIVPDRLAWVI 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQLS------QVLKGHVA 162
            +D   +  DG    AA+     AL       + +  +   K           V K  ++
Sbjct: 136 YLDIICLNQDGNLLDAALAAGIAALKVTTLPEVIYNVESGEKVVNPLKRQQLNVKKLPLS 195

Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLN 221
                      ++D    E+S      + V+  DSG I  +                 + 
Sbjct: 196 TTIAVFKSDCLLIDPTVEEESFSSGTISIVIEADSGDICGIHQPGTE-PLKPSEIDFCIT 254

Query: 222 LAKDRIADLIKLQKDVISN 240
            A+ +   + +L K  I N
Sbjct: 255 QAQVKTKAVAELIKTAIKN 273


>gi|296117686|ref|ZP_06836270.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295969417|gb|EFG82658.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 779

 Score = 97.5 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 93/248 (37%), Gaps = 30/248 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
            R+ GR    +R++     +     GS L + G+T +L   TL+    E+    +   + 
Sbjct: 395 FRIDGRAAEDIRDLGAEIGLIPRVHGSALFERGETQILGVTTLDMLKMEQTIDSLTPVES 454

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 455 KRYIHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERALLPVIPPREQFPYTIRQVS 510

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
           + + ++G T   ++  + ++L++                 LK  VA I+ G++ G     
Sbjct: 511 EALGSNGSTSMGSVCASTMSLYNAGV-------------PLKAPVAGIAMGLVSGEVDGE 557

Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T S +I  +Q   +      +     L+ A++   
Sbjct: 558 ERFVALTDILGAEDAFGDMDFKVAGT-SDYITALQLDTKLDGIPSEVLANALSQARNARE 616

Query: 229 DLIKLQKD 236
           +++ +  +
Sbjct: 617 EILDIMAE 624



 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 76/256 (29%), Gaps = 52/256 (20%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I+     +++ A+GS    F D T LLTT T      E +  +             G 
Sbjct: 62  RTITFETGQLARQADGSVTTYFDDDTMLLTTVTASNQPREGLDFFPLTVDVEERMYAAGK 121

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +REA   R    +    R+I R LR           Q+I     +      
Sbjct: 122 IP---GSFFRREA---RPSTEAILACRLIDRPLRPTFVKGLRNEVQVINTVLSLDPAEYY 175

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------CGYPIVDLDY 179
              AI G+  A                    + G V  +   +L       G  +   + 
Sbjct: 176 DVIAINGSSAATQLSGL-------------PVSGPVGGVRMALLADDKHPEGQWVAFPNA 222

Query: 180 GEDSTIDVDANFVMT-----------DSGHIVEVQGS---------AERATFSQD-HFFA 218
            +      +                 D   I+ V+           AE A   Q+    A
Sbjct: 223 EQHERALFEMVVAGRIVSRKNKGKNVDDVAIMMVEAGAGVHVHERVAEGAPAPQESTVAA 282

Query: 219 MLNLAKDRIADLIKLQ 234
            L  AK  I  L + Q
Sbjct: 283 GLEAAKPFIKTLCEAQ 298


>gi|15675748|ref|NP_269922.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           M1 GAS]
 gi|71911473|ref|YP_283023.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS5005]
 gi|81533345|sp|Q99XZ5|PNP_STRP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|13622969|gb|AAK34643.1| putative polynucleotide phosphorylase, alpha chain [Streptococcus
           pyogenes M1 GAS]
 gi|71854255|gb|AAZ52278.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           MGAS5005]
          Length = 710

 Score = 97.5 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 86/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLAPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +  A   R+ G       +  RAL  V+         I +  
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + A  +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILD 538

Query: 233 LQKDVISNE 241
           + +  I+  
Sbjct: 539 VIEATIAEP 547



 Score = 78.2 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 86/231 (37%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
            + +    V+K A G+ +V++GD+ +LT A + +K      +     +       G  P 
Sbjct: 14  PLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR    +    R+I R +R +         Q+I        +     A
Sbjct: 73  --GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +  G + G  I++ D  +     ++
Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                +    I  V+  A+    S+D     L      I +LI  Q+ +++
Sbjct: 175 LTVAGSKEA-INMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 222


>gi|315606750|ref|ZP_07881760.1| polyribonucleotide nucleotidyltransferase [Prevotella buccae ATCC
           33574]
 gi|315251605|gb|EFU31584.1| polyribonucleotide nucleotidyltransferase [Prevotella buccae ATCC
           33574]
          Length = 780

 Score = 97.5 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 88/251 (35%), Gaps = 30/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +RL GR   ++R I           GS L + G+T  L+T TL  K+   + +      +
Sbjct: 323 LRLDGRATTEIRPIWSEVSPLPMPHGSALFQRGETMSLSTCTLGTKLDEKLVDDVLMKGY 382

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG    +  V  R+ G       +  R L+  +         + +  
Sbjct: 383 QRFLLHYNFPPFSTGEAKAQRGVGRREVGHGH----LAWRGLKDQIPADF--PYTVRLVS 436

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171
            +++++G +  A +    +AL D    M             K  V+ I+ G++       
Sbjct: 437 QILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVSGIAMGLIKNPGEDK 483

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G +   Q   +    S +     L  AK     +
Sbjct: 484 YAILSDILGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHI 542

Query: 231 IKLQKDVISNE 241
           +    + IS  
Sbjct: 543 LNKMMETISEP 553



 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 94/242 (38%), Gaps = 28/242 (11%)

Query: 3   LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       I++    V+K A+G+ +++ G+T LL T    ++ VP            
Sbjct: 11  PDGRT------ITIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQVDYR 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y    R  G   KRE   G+         R++ RALR +   +     ++ +   ++ 
Sbjct: 65  EQYSAAGRFPGGFTKRE---GKANDDEILTSRLVDRALRPLFPSN--YHAEVYVQVMLLS 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           V   D L      +            ++ +    + G  +++  + 
Sbjct: 120 ADG-----------VDQPDALAGFAASAAMACSDIPFDYPISEVRVARVGGEYVINPTFQ 168

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           + +  D+D     T   +I+ V+G  E    S+      L +A + I  + +LQ++ +S 
Sbjct: 169 QMADADMDLMVGATKD-NIMMVEG--EMKEVSEQDLIGALKVAAEAIKPMCELQEE-LSK 224

Query: 241 EV 242
           E+
Sbjct: 225 EL 226


>gi|94995150|ref|YP_603248.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS10750]
 gi|123080074|sp|Q1J4N2|PNP_STRPF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|94548658|gb|ABF38704.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           MGAS10750]
          Length = 710

 Score = 97.5 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 86/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLAPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +  A   R+ G       +  RAL  V+         I +  
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + A  +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILD 538

Query: 233 LQKDVISNE 241
           + +  I+  
Sbjct: 539 VIEATIAEP 547



 Score = 78.2 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 86/231 (37%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
            + +    V+K A G+ +V++GD+ +LT A + +K      +     +       G  P 
Sbjct: 14  PLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR    +    R+I R +R +         Q+I        +     A
Sbjct: 73  --GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPVA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +  G + G  I++ D  +     ++
Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                +    I  V+  A+    S+D     L      I +LI  Q+ +++
Sbjct: 175 LTVAGSKEA-INMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 222


>gi|56808519|ref|ZP_00366256.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Streptococcus pyogenes M49 591]
 gi|209560089|ref|YP_002286561.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           NZ131]
 gi|226704825|sp|B5XIK4|PNP_STRPZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|209541290|gb|ACI61866.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           NZ131]
          Length = 710

 Score = 97.5 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 86/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLAPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +  A   R+ G       +  RAL  V+         I +  
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGINYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + A  +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILD 538

Query: 233 LQKDVISNE 241
           + +  I+  
Sbjct: 539 VIEATIAEP 547



 Score = 78.2 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 86/231 (37%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
            + +    V+K A G+ +V++GD+ +LT A + +K      +     +       G  P 
Sbjct: 14  PLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR    +    R+I R +R +         Q+I        +     A
Sbjct: 73  --GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +  G + G  I++ D  +     ++
Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                +    I  V+  A+    S+D     L      I +LI  Q+ +++
Sbjct: 175 LTVAGSKEA-INMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 222


>gi|227549063|ref|ZP_03979112.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078845|gb|EEI16808.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 776

 Score = 97.5 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 93/250 (37%), Gaps = 30/250 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
            R+ GR  + +R++ +   +   A GS L + G+T +L   TL+    E+    ++    
Sbjct: 390 FRIDGRGVSDIRDLEVEVELIPRAHGSALFERGETQILGVTTLDMLKMEQTLDSLQPETA 449

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 450 KRYIHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERALIPVIPPREEFPYTIRQVS 505

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
           + + ++G T   ++  + ++L++    +                VA I+ G++ G     
Sbjct: 506 EALGSNGSTSMGSVCASTLSLYNAGVPLAA-------------PVAGIAMGLVSGEVDGA 552

Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T    I  +Q   +      +   + L  A+D   
Sbjct: 553 TKYVALTDILGAEDAFGDMDFKVSGTPDF-ITALQLDTKLDGIPSEVLVSALEQARDARE 611

Query: 229 DLIKLQKDVI 238
            ++    +VI
Sbjct: 612 AILDTMAEVI 621



 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 85/258 (32%), Gaps = 51/258 (19%)

Query: 12  REISLTRR-VSKYAEGSC---LVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEY 63
           R I      +++ A GS    L +  DT LL T T      + +  +             
Sbjct: 57  RTIRFETGQLARQAGGSVTTYLDE--DTMLLATTTASKNPRDNIDFFPLTVDVEERMYAA 114

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           G +P   G+  +RE   GR    +    R+I R LR           Q++I    +  D 
Sbjct: 115 GKIP---GSFFRRE---GRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSMNPDE 168

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------CGYPIVDL 177
                AI GA  A                    + G V A+   +L       G  +   
Sbjct: 169 YYDVVAINGASAATQLSGL-------------PVSGAVGAVRMALLTDDQHPEGQWVAFP 215

Query: 178 DYGEDSTI-----------DVDANFVMTDSG---HIVEVQGSAERATFSQDHFFAMLNLA 223
           ++ +               D D   +M ++G    +V++      A  +++     L+ A
Sbjct: 216 NHEQHDHCVFEMVVAGRVVDGDVAIMMVEAGAGASVVKLVADGAPAP-TEETVAEGLDAA 274

Query: 224 KDRIADLIKLQKDVISNE 241
           K  I  L + Q   ++ E
Sbjct: 275 KPFIKTLCETQ-AALAEE 291


>gi|306826612|ref|ZP_07459917.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           ATCC 10782]
 gi|304431190|gb|EFM34194.1| polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           ATCC 10782]
          Length = 710

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 86/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLAPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +  A   R+ G       +  RAL  V+         I +  
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + A  +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILD 538

Query: 233 LQKDVISNE 241
           + +  I+  
Sbjct: 539 VIEATIAEP 547



 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 86/231 (37%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
            + +    V+K A G+ +V++G++ +LT A + +K      +     +       G  P 
Sbjct: 14  PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR    +    R+I R +R +         Q+I        +     A
Sbjct: 73  --GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +  G + G  I++ D  +     ++
Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                +    I  V+  A+    S+D     L      I +LI  Q+ +++
Sbjct: 175 LTVAGSKEA-INMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 222


>gi|325661686|ref|ZP_08150309.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471939|gb|EGC75154.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 721

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 83/250 (33%), Gaps = 26/250 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
           R  GR  +Q+R ++    +     GS +   G T  + T T          I        
Sbjct: 338 RPDGRAIDQIRPLAAETDLIPRVHGSAMFTRGQTQ-ICTITTLAPLSEAQRIDGLDEAET 396

Query: 60  TAEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  Y M   +  +    E    R  G R      +  RAL  V+   A     I    + 
Sbjct: 397 SKRY-MHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSEAEFPYAIRTVSET 455

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY------ 172
            +++G T  A++  + ++L                   +K  VA IS G++ G       
Sbjct: 456 FESNGSTSQASVCASSMSLMAAGV-------------PIKSAVAGISAGLVTGETDDDYI 502

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI- 231
            + D+   ED   D+D     T  G I  +Q   +    ++      +   K     ++ 
Sbjct: 503 VLTDIQGLEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAIACTKKARTYILD 561

Query: 232 KLQKDVISNE 241
           ++    I+  
Sbjct: 562 EVMSKAIAEP 571



 Score = 76.7 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 79/226 (34%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    V+  A G+ L+ +G+T +L+TAT      E +  +  + ++       G +
Sbjct: 38  RTLRVDVGRVAAQANGAALMHYGETVVLSTATASEKPREGIDFFPLSVEYEEKLYAVGKI 97

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 98  P---GGFNKRE---GKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPE 151

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  +    G++ G  + + +  + +  D
Sbjct: 152 LTAMLGSAIATA-------------ISDIPFDGPTSTTQVGLIDGEFVFNPNAAQRAVSD 198

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +      +  A +   ++IK
Sbjct: 199 LQLTVASTRD-KVIMIEAGANEVP--EAKMIEAIFAAHEVNQEVIK 241


>gi|331084721|ref|ZP_08333809.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330410815|gb|EGG90237.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 721

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 83/250 (33%), Gaps = 26/250 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
           R  GR  +Q+R ++    +     GS +   G T  + T T          I        
Sbjct: 338 RPDGRAIDQIRPLAAETDLIPRVHGSAMFTRGQTQ-ICTITTLAPLSEAQRIDGLDEAET 396

Query: 60  TAEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  Y M   +  +    E    R  G R      +  RAL  V+   A     I    + 
Sbjct: 397 SKRY-MHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSEAEFPYAIRTVSET 455

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY------ 172
            +++G T  A++  + ++L                   +K  VA IS G++ G       
Sbjct: 456 FESNGSTSQASVCASSMSLMAAGV-------------PIKSAVAGISAGLVTGETDDDYI 502

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI- 231
            + D+   ED   D+D     T  G I  +Q   +    ++      +   K     ++ 
Sbjct: 503 VLTDIQGLEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAIACTKKARTYILD 561

Query: 232 KLQKDVISNE 241
           ++    I+  
Sbjct: 562 EVMSKAIAEP 571



 Score = 76.7 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 79/226 (34%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    V+  A G+ L+ +G+T +L+TAT      E +  +  + ++       G +
Sbjct: 38  RTLRVDVGRVAAQANGAALMHYGETVVLSTATASEKPREGIDFFPLSVEYEEKLYAVGKI 97

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 98  P---GGFNKRE---GKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPE 151

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  +    G++ G  + + +  + +  D
Sbjct: 152 LTAMLGSAIATA-------------ISDIPFDGPTSTTQVGLIDGEFVFNPNAAQRAVSD 198

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +      +  A +   ++IK
Sbjct: 199 LQLTVASTRD-KVIMIEAGANEVP--EAKMIEAIFAAHEVNQEVIK 241


>gi|55820183|ref|YP_138625.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           thermophilus LMG 18311]
 gi|55822071|ref|YP_140512.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           thermophilus CNRZ1066]
 gi|81559948|sp|Q5M1W9|PNP_STRT1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81561123|sp|Q5M6F9|PNP_STRT2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|55736168|gb|AAV59810.1| polynucleotide phosphorylase, (PNPase) [Streptococcus thermophilus
           LMG 18311]
 gi|55738056|gb|AAV61697.1| polynucleotide phosphorylase, (PNPase) [Streptococcus thermophilus
           CNRZ1066]
          Length = 741

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 85/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----H 56
           +R  GR+ +++R +           GS L   G T  L+  TL       + +       
Sbjct: 317 IRPDGRRVDEIRPLDAEIDFLPNVHGSGLFTRGQTQALSVLTLAPMSDTQLVDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFLHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSVEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + +  +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRLG-ITALQMDIKISGITPAILEEALAQAKVARFEILD 538

Query: 233 LQKDVISNE 241
           + +  I+  
Sbjct: 539 VIESAIAEP 547



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 83/234 (35%), Gaps = 26/234 (11%)

Query: 10  QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGM 65
           + R + +    V+K A G+ +V++GDT +L+ A + +K      +     +       G 
Sbjct: 11  EGRPLVVEVGQVAKQANGAVVVRYGDTTVLSVAVMSKKMATANFFPLQVNYEEKMYAAGK 70

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
            P   G   KRE   GR    +    R+I R +R +         Q+I        +   
Sbjct: 71  FP---GGFSKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASA 124

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
             AA+ G+ +AL                     G +A +         I++    +    
Sbjct: 125 PMAAMFGSSLALS-------------ISDIPFNGPIAGVQVAYAAEDFIINPSASDKEVS 171

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            +D     T    I  V+  A+    S+D     L    + I +L+  Q  +++
Sbjct: 172 HLDLIVAGTKEA-INMVEAGAQE--LSEDIMLQALLKGHEAIQELVDFQNYIVA 222


>gi|237739457|ref|ZP_04569938.1| nucleoside-triphosphatase [Fusobacterium sp. 2_1_31]
 gi|229423065|gb|EEO38112.1| nucleoside-triphosphatase [Fusobacterium sp. 2_1_31]
          Length = 262

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 40/67 (59%)

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           VDL Y EDS  +VD N +M   G  +EVQG+ E +TF++     +L+LA+  I  +I LQ
Sbjct: 1   VDLKYSEDSAAEVDMNVIMNKKGEFIEVQGTGEESTFTRTELNGLLDLAEASIKRIINLQ 60

Query: 235 KDVISNE 241
             VI  E
Sbjct: 61  DKVIEQE 67


>gi|332289494|ref|YP_004420346.1| polynucleotide phosphorylase/polyadenylase [Gallibacterium anatis
           UMN179]
 gi|330432390|gb|AEC17449.1| polynucleotide phosphorylase/polyadenylase [Gallibacterium anatis
           UMN179]
          Length = 718

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 92/245 (37%), Gaps = 26/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR  + +R + +   V     GS +   G+T  L   TL  +    I +   G  T 
Sbjct: 317 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQSLAVTTLGTERDAQIIDELTGERTD 376

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G      +   R+ G      R+  R + +V+         + +  +
Sbjct: 377 HFLFHYNFPPYSVGETGLIGSPKRREIGHG----RLAKRGVAAVMPTLEEFPYVVRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A++ GA ++L D                 +K  VA I+ G++        
Sbjct: 433 ITESNGSSSMASVCGASLSLMDAGV-------------PIKAAVAGIAMGLVKEEDKFVV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    + +     LN AK     ++ +
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTRTG-VTALQMDIKIEGITPEIMQIALNQAKSARMHILNV 538

Query: 234 QKDVI 238
            +  I
Sbjct: 539 MEQAI 543



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 72/228 (31%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L      + A  + +    DT +  T   +++V           +T  Y     + G 
Sbjct: 15  VTLETGAMARQATAAVMASMDDTCVFVTVVAKKEV---KEGQDFFPLTVNYQERSYAAGR 71

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR       I R+I R +R +     L   QII     +         
Sbjct: 72  IPGGFFKRE---GRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVNPQISPDLV 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 129 AMIGASAALS-------------LSGVPFNGPIGAARVGFINDQFVLNPTMSEQKQSRLD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                TD   ++     +E    +++   A +     +   +I+  K+
Sbjct: 176 LVVAGTDKAVLMV---ESEADILTEEQMLAAVVFGHQQQQVVIEAIKE 220


>gi|242278471|ref|YP_002990600.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio
           salexigens DSM 2638]
 gi|242121365|gb|ACS79061.1| Polyribonucleotide nucleotidyltransferase [Desulfovibrio salexigens
           DSM 2638]
          Length = 750

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 88/249 (35%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL--EEKVPMW--IRNTKH 56
           +R+ GR    +R +S+         GS L + G+T  L   TL        +  +     
Sbjct: 320 VRIDGRDLTTVRNLSMEVSNLPMTHGSALFRRGETSALAVCTLGSTRDEQRFETLIGEDT 379

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P   G      A S R+ G       +  RALR V+  +      + +  
Sbjct: 380 KRFMLHYNFPPYCVGEAKFLRAPSRREIGHGT----LAERALRPVLPKAEDFPFTMRVVS 435

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V+ ++G +  A + G  ++L D                 +   VA I+ G+        
Sbjct: 436 EVMDSNGSSSMATVCGTTLSLMDAGV-------------PISAPVAGIAMGLCQEGDEYF 482

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T+ G I  +Q   + +    D     L  AKD    ++ 
Sbjct: 483 VLTDILGDEDALGDMDFKVAGTEEG-ITAIQMDIKISGIPADVLRRALAQAKDARQIILD 541

Query: 233 LQKDVISNE 241
             K+ +   
Sbjct: 542 DMKETMPEP 550



 Score = 85.1 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 87/235 (37%), Gaps = 27/235 (11%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTATL-EEKVPM--WIRNTKHGWITAEYGMLPR 68
           +I+L          G+ L+K G T +L TA       P   +     +   T   G +P 
Sbjct: 18  DITLETGRMANQTNGTVLIKSGGTVVLVTAVGMPADGPRDFFPLTCNYLERTYAAGRIP- 76

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR   R   + R++ R +R +   +     Q+I        D      
Sbjct: 77  --GGYFRREV--GRPSDRETLVSRLMDRPIRPMFPKAYRDEVQVIATVLSADTDTNPDVL 132

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+TGA  ALH                    G VAA   G++    ++   Y        D
Sbjct: 133 AMTGASAALH-------------ISDLPFNGPVAAARVGLVDNEFVLYPTYK-GVAEQSD 178

Query: 189 ANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            N V   +   ++ V+GS++    S++     L    +++A +  LQ D +  +V
Sbjct: 179 LNLVFAATRDAVIMVEGSSQ--FLSENTIAEALEWGHEQMAPMFDLQ-DALREKV 230


>gi|119188875|ref|XP_001245044.1| hypothetical protein CIMG_04485 [Coccidioides immitis RS]
          Length = 298

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 83/265 (31%), Gaps = 25/265 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW--IRNTKHGW 58
           +RL GR+ N++R +      +  + GS  +  G+T ++       +              
Sbjct: 14  LRLDGRRWNELRLVQAQISTNPASSGSSYLAMGNTVVVCNVHGPAEGKRSETAGGGGGAV 73

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGR--------SQEIQRMIGRALRSVVDLSALGSR 110
           ++    +   +  +R K+  ++G  GG         + E+   +  A +  +        
Sbjct: 74  VSVVVNIAGFAGVDRKKKSMMAGGGGGGGGGGDRQATTELSSALRDAFQPHLHTHIYPHS 133

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS-----NKFQLSQVLKGHVAAIS 165
            I +   V+ +DG    A I    +AL D    M              +      +A   
Sbjct: 134 TISVHVSVLSSDGSIFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAAELAQSR 193

Query: 166 CGMLCG--YPIVDLDYGEDSTIDVDA-----NFVMTDSGHIVEVQGSA---ERATFSQDH 215
            G +     P++DL   E+  +                    E Q  +     +     +
Sbjct: 194 VGGINESLDPLLDLSRPEELELPHMTVANTNPVAGASEEGEEEEQMLSIVRMESGVHISY 253

Query: 216 FFAMLNLAKDRIADLIKLQKDVISN 240
              +  +  D    + ++   V+ +
Sbjct: 254 LETVFAVGIDGCKQVREILNGVLKS 278


>gi|19746859|ref|NP_607995.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS8232]
 gi|81632438|sp|Q8NZC6|PNP_STRP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|19749100|gb|AAL98494.1| putative polynucleotide phosphorylase, alpha chain [Streptococcus
           pyogenes MGAS8232]
          Length = 710

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 86/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLAPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +  A   R+ G       +  RAL  V+         I +  
Sbjct: 377 KSFLHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + A  +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILD 538

Query: 233 LQKDVISNE 241
           + +  I+  
Sbjct: 539 VIEATIAEP 547



 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 86/231 (37%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
            + +    V+K A G+ +V++G++ +LT A + +K      +     +       G  P 
Sbjct: 14  PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR    +    R+I R +R +         Q+I        +     A
Sbjct: 73  --GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +  G + G  I++ D  +     ++
Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                +    I  V+  A+    S+D     L      I +LI  Q+ +++
Sbjct: 175 LTVAGSKEA-INMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 222


>gi|312277503|gb|ADQ62160.1| Polyribonucleotide nucleotidyltransferase [Streptococcus
           thermophilus ND03]
          Length = 741

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 85/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----H 56
           +R  GR+ +++R +           GS L   G T  L+  TL       + +       
Sbjct: 317 IRPDGRRVDEIRPLDAEIDFLPNVHGSGLFTRGQTQALSVLTLAPMSDTQLVDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFLHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSVEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + +  +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRLG-ITALQMDIKISGITPAILEEALAQAKVARFEILD 538

Query: 233 LQKDVISNE 241
           + +  I+  
Sbjct: 539 VIESAIAEP 547



 Score = 78.6 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 84/234 (35%), Gaps = 26/234 (11%)

Query: 10  QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKV---PMWIRNTKHGWITAEYGM 65
           + R + +    V+K A G+ +V++GDT +L+ A + +K+     +     +       G 
Sbjct: 11  EGRPLVVEVGQVAKQANGAVVVRYGDTTVLSVAVMSKKIATADFFPLQVNYEEKMYAAGK 70

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
            P   G   KRE   GR    +    R+I R +R +         Q+I        +   
Sbjct: 71  FP---GGFSKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASV 124

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
             AA+ G+ +AL                     G +A +         I++    +    
Sbjct: 125 PMAAMFGSSLALS-------------ISDIPFNGPIAGVQVAYAAEDFIINPSASDKEVS 171

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            +D     T    I  V+  A+    S+D     L    + I +L+  Q  +++
Sbjct: 172 HLDLIVAGTKEA-INMVEAGAQE--LSEDIMLQALLKGHEAIQELVDFQNYIVA 222


>gi|319939878|ref|ZP_08014233.1| polyribonucleotide nucleotidyltransferase [Streptococcus anginosus
           1_2_62CV]
 gi|319810889|gb|EFW07208.1| polyribonucleotide nucleotidyltransferase [Streptococcus anginosus
           1_2_62CV]
          Length = 726

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 82/241 (34%), Gaps = 26/241 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 IRPDGRKVDEIRPLDAEIDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 ILTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILQEALAQAKKARFEILD 538

Query: 233 L 233
           L
Sbjct: 539 L 539



 Score = 85.1 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 88/231 (38%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
           ++ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P 
Sbjct: 14  DLVVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKYP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR    +    R+I R +R +         Q+I       AD     A
Sbjct: 73  --GGFNKRE---GRPSTDATLTARLIDRPIRPMFADGFRNEVQVINTVLSYDADASAPMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +  G + G  +++    +     ++
Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVGYVNGELVINPSQEQKEASLLE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 175 LTVAGTKEA-INMVESGAKE--LSEELMLEALLKGHEAVKELIAFQEEIVA 222


>gi|94993180|ref|YP_601279.1| polynucleotide phosphorylase/polyadenylase [Streptococcus pyogenes
           MGAS2096]
 gi|123382250|sp|Q1J9S6|PNP_STRPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|94546688|gb|ABF36735.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pyogenes
           MGAS2096]
          Length = 701

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 86/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 308 IRPDGRKIDEIRPLDAVVDFLPKVHGSGLFTRGQTQALSILTLAPMGETQIIDGLAPEYK 367

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +  A   R+ G       +  RAL  V+         I +  
Sbjct: 368 KRFLHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPSLEEFPYAIRLVA 423

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 424 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 470

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + A  +       L  AK    +++ 
Sbjct: 471 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILD 529

Query: 233 LQKDVISNE 241
           + +  I+  
Sbjct: 530 VIEATIAEP 538



 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 86/231 (37%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
            + +    V+K A G+ +V++GD+ +LT A + +K      +     +       G  P 
Sbjct: 5   PLVVEVGQVAKQANGATVVRYGDSTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP- 63

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR    +    R+I R +R +         Q+I        +     A
Sbjct: 64  --GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMA 118

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +  G + G  I++ D  +     ++
Sbjct: 119 AMFGSSLALS-------------ISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 165

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                +    I  V+  A+    S+D     L      I +LI  Q+ +++
Sbjct: 166 LTVAGSKEA-INMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 213


>gi|147669503|ref|YP_001214321.1| polynucleotide phosphorylase/polyadenylase [Dehalococcoides sp.
           BAV1]
 gi|187610294|sp|A5FQT2|PNP_DEHSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|146270451|gb|ABQ17443.1| Polyribonucleotide nucleotidyltransferase [Dehalococcoides sp.
           BAV1]
          Length = 720

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 94/250 (37%), Gaps = 27/250 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +R++GR   Q+R++     +     GS L   GDT ++   TL    E +    +     
Sbjct: 311 IRVNGRGIKQLRQLDAETGLLPRVHGSALFTRGDTQVMAITTLGSLQESQQLDGLSAEDT 370

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +    SG  G R      +  RAL  ++         I +  
Sbjct: 371 KRFMLHYNFAPFSTGEVKR----SGSPGRREIGHGALAERALVPILPTPEEFPYTIRLVA 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
           DV+ + G T   ++  + ++L D                 +K  VA IS G++ G     
Sbjct: 427 DVVGSSGSTSMGSVCSSSLSLMDAGV-------------PVKKAVAGISIGLITGENGTY 473

Query: 174 --IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             I D++  ED+  D+D     T  G I  +Q   +    S D     +  AK+   +++
Sbjct: 474 CTITDIEGIEDNYGDMDFKVAGTRDG-ITAIQVDMKVKGISFDIIRDAIYQAKEARYNIL 532

Query: 232 KLQKDVISNE 241
            +    ++  
Sbjct: 533 DVMDKALAQP 542



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 79/230 (34%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R++ +        A+ +  +++ DT LL T        E V        +       G +
Sbjct: 14  RKLVIESGKLARLADAAITIRYADTELLVTLCSAKKPREGVDFLPLTIDYEERMYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  ++RE   GR   ++    R+  R LR ++        QIII       +    
Sbjct: 74  P---GGFIRRE---GRPSEQAILAGRLTDRPLRPLLPKEWRNDLQIIITVIASDKENDAD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              + GA   L                    +G V A   G + G  +++  + +  +  
Sbjct: 128 IWGVVGASTVLAM-------------SEIPYEGPVGASRIGYINGEFVLNPTFAQLESSQ 174

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D   V T    +V ++  ++     +D     +  A     +LI LQ +
Sbjct: 175 LDLVVVSTRKA-VVMIEAGSKEIP--EDIMINAIEFAHKANQELIDLQDE 221


>gi|94984509|ref|YP_603873.1| polynucleotide phosphorylase/polyadenylase [Deinococcus
           geothermalis DSM 11300]
 gi|122986710|sp|Q1J1D0|PNP_DEIGD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|94554790|gb|ABF44704.1| Polyribonucleotide nucleotidyltransferase [Deinococcus geothermalis
           DSM 11300]
          Length = 721

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 94/246 (38%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR    +R I +  R    A GS +   G+T +L   TL  +    + +   G   
Sbjct: 318 LRADGRNSKTVRPIWIEARPLPRAHGSAIFTRGETQVLGVTTLGTERDELLVDNLTGETN 377

Query: 61  ----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +    S R+ G       +  RA+R+V+         I +  
Sbjct: 378 DRFLLHYNFPPYSTGEVKRVGGQSRREVGHG----NLAKRAIRAVLPAFDDFPYVIRVVG 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY--- 172
           +V++++G +  A +    ++L D                 ++  VA ++ G++  G    
Sbjct: 434 EVLESNGSSSMATVCAGTLSLMDAGV-------------PIQAPVAGVAMGLVMEGEQYR 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G +  +Q   + +  +       L  A++    ++ 
Sbjct: 481 ILTDILGLEDALGDMDFKVCGTAEG-VTALQMDIKVSGVTPAIMREALAQAREARLHILG 539

Query: 233 LQKDVI 238
              +V+
Sbjct: 540 KMAEVL 545



 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 81/238 (34%), Gaps = 31/238 (13%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           RE+S+        A GS  +++GDT LL TA   E+            +T E+     + 
Sbjct: 13  RELSIETGKLAKLASGSVTLRYGDTLLLVTAQAREE----RSTLDFLPLTVEFEERHYAV 68

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G    +  +RE   GR G  +    R+  R +R +         Q+II            
Sbjct: 69  GRIPGSFHRRE---GRPGEHAILSARITDRQIRPLFPKGYRQETQVIITVLSADQQNAPD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                GA  AL                     G  A +  GM+ G  +++    + +   
Sbjct: 126 VLGAIGASAALS-------------LSDIPWNGPTACVRVGMIDGEYVINPTSDQLTRSS 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK---DRIADLIKLQKDVISNE 241
           +D     T    +  V+  A+    S++     +  A      + DLI+  +  +  E
Sbjct: 173 LDLVVAGTRDA-VNMVEAGAQG--VSEETLVGAIEFAHRELQGVLDLIETMRAEVGRE 227


>gi|325092610|gb|EGC45920.1| exonuclease RRP41 [Ajellomyces capsulatus H88]
          Length = 291

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 82/253 (32%), Gaps = 20/253 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN---TKHG 57
           +RL GR+ N++R +      +  + GS  +  G+T ++       +           +  
Sbjct: 14  LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++    +   S  +R K+ A  G    + S ++   +  A +  +         I +  
Sbjct: 74  VVSVAVNVAGFSGVDRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHV 133

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA----ISCGMLCG- 171
            V+ +DG    A I    +AL D    M        +    +    A       G +   
Sbjct: 134 SVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAEPELTRVGGINES 193

Query: 172 -YPIVDLDYGEDSTID----VDANFVMTDSGHIV---EVQGS---AERATFSQDHFFAML 220
             P++D+   E+  +      + N   T    +    E Q        A     +   M 
Sbjct: 194 LDPLLDMSMPEEQELPFMTVANTNPAPTGDDSMDDQEENQMLSIVQMGAGVHISYLETMF 253

Query: 221 NLAKDRIADLIKL 233
            +  D    + ++
Sbjct: 254 AVGLDGCKQVREI 266


>gi|154279662|ref|XP_001540644.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150412587|gb|EDN07974.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 291

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 82/253 (32%), Gaps = 20/253 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN---TKHG 57
           +RL GR+ N++R +      +  + GS  +  G+T ++       +           +  
Sbjct: 14  LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++    +   S  +R K+ A  G    + S ++   +  A +  +         I +  
Sbjct: 74  VVSVAVNVAGFSGVDRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHV 133

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA----ISCGMLCG- 171
            V+ +DG    A I    +AL D    M        +    +    A       G +   
Sbjct: 134 SVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAEPELTRVGGINES 193

Query: 172 -YPIVDLDYGEDSTID----VDANFVMTDSGHIV---EVQGS---AERATFSQDHFFAML 220
             P++D+   E+  +      + N   T    +    E Q        A     +   M 
Sbjct: 194 LDPLLDMSMPEEQELPFMTVANTNPAPTGDDSMDDQEENQMLSIVQMGAGVHISYLETMF 253

Query: 221 NLAKDRIADLIKL 233
            +  D    + ++
Sbjct: 254 AVGLDGCKQVREI 266


>gi|296877279|ref|ZP_06901319.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           parasanguinis ATCC 15912]
 gi|296431799|gb|EFH17606.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           parasanguinis ATCC 15912]
          Length = 785

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 362 VRPDGRKVDEIRPLDAQVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 421

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 422 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 477

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 478 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 524

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 525 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 583

Query: 233 LQKDVI 238
           + +  I
Sbjct: 584 VIEATI 589



 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 88/231 (38%), Gaps = 26/231 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A G+ +V++G++ +LT A + +K      +     +       G  P
Sbjct: 58  RELIVETGQVAKQANGAVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 117

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 118 ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 171

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 172 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGEIIINPTQEQAERSLL 218

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           +     T    I  V+  A+    S++     L    + + +LI  Q++++
Sbjct: 219 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIV 266


>gi|290990431|ref|XP_002677840.1| 3' exoribonuclease domain-containing protein [Naegleria gruberi]
 gi|284091449|gb|EFC45096.1| 3' exoribonuclease domain-containing protein [Naegleria gruberi]
          Length = 367

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 87/268 (32%), Gaps = 32/268 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKY----AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKH 56
           +R+ GR     R I  +   S        G   V  G+T  L   +     P ++     
Sbjct: 58  LRIDGRDLYDYRSIEFSLPTSSQELAVPSGQVQVTLGNTIALGIVSCSIMEP-YMDRPNE 116

Query: 57  GWITAEYGMLPRST-GNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSAL----GS 109
           G++T +   +  ST G+R      + +Q     EI R+I R+LR    +D  AL    G 
Sbjct: 117 GFLTFQ---IDFSTVGSRPIGTKQTSQQRELCIEIGRVIDRSLRGSRSIDTEALCIIAGR 173

Query: 110 R--QIIIDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVL 157
           +   + +D  ++Q DG         A  AL    +           +    ++  +   +
Sbjct: 174 KVWSLRVDVHILQDDGNVFDCCHLAAVAALLHFKRPEVTIEGDRVVVHTVQDRQPVPLSV 233

Query: 158 KGHVAAISCGMLCGYP----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
                  S            +VD    E+   +      +     +  +Q        ++
Sbjct: 234 HHIPICTSFSFFDHDSATLFVVDPCKKEEMIAEGFMTIALNAHKELCAIQKGG-GLALTK 292

Query: 214 DHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D       +   +  ++ +  K  +  E
Sbjct: 293 DQILECAQIGSVKSKEITETLKQFLQAE 320


>gi|313888270|ref|ZP_07821941.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845673|gb|EFR33063.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 703

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 91/239 (38%), Gaps = 26/239 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R   R+  ++R +S    V     GS L   G T +L+ ATL    EE+V   + + K  
Sbjct: 312 RPDDRKLTEIRHLSSEVGVLPRTHGSGLFTRGQTQVLSIATLGAISEEQVIDGLGDDKPK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y       G+     +   R+ G       +  RAL  V+  S      I +  +
Sbjct: 372 RYIHHYNFPGFCVGDTKPSRSPGRREIGHG----ALAERALIPVIPDSEEFPYTIRVVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           V+ ++G +  A+I G+ +AL D                 +K  VA I+ G++        
Sbjct: 428 VLSSNGSSSQASICGSTLALMDAGV-------------PIKAPVAGIAMGLIEEDGVIKI 474

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           + D+   ED   D+D     T  G I  +Q   +     ++     L  AKD   +++ 
Sbjct: 475 LTDIQGLEDHFGDMDFKVAGTRKG-ITAIQMDIKVEGIKKEILETALERAKDARFEILD 532



 Score = 89.0 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 93/235 (39%), Gaps = 28/235 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
           ++ +T   V++ A G+CLV++GDT +L TAT      E +  +  +  +       G +P
Sbjct: 13  QLKVTIGKVAEQANGACLVQYGDTVVLVTATSSSKPREGIDFFPLSVDYEEKMYAVGKIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R LR +          I+     +  D     
Sbjct: 73  ---GGFIKRE---GRPSEKATLSARLIDRPLRPLFPEGYRNDVHIVATVLSVDQDHSPEI 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ G+ +AL                     G   ++  G + G  I++ +  + +   +
Sbjct: 127 VAMIGSSIALS-------------ISDIPFDGPTGSVEVGYIDGKYIINPNEEQRNNSRI 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           + +   T +  I+ V+  A+    S+      +    + I ++     + I+ E+
Sbjct: 174 NLSLAGTKTA-IMMVEAGAQE--VSEAEMLEAILEGHEVIKEICDFVDE-IAKEI 224


>gi|302852014|ref|XP_002957529.1| hypothetical protein VOLCADRAFT_107702 [Volvox carteri f.
           nagariensis]
 gi|300257171|gb|EFJ41423.1| hypothetical protein VOLCADRAFT_107702 [Volvox carteri f.
           nagariensis]
          Length = 830

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 90/247 (36%), Gaps = 20/247 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------ 54
           +R  GR+   +R I+    +     GS L   G+T  +  ATL         +T      
Sbjct: 354 IRADGRRVTDIRPIASRAGLLPRTHGSALFTRGETQAICVATLGTASDALRADTMRKAEE 413

Query: 55  ---KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
                G    +Y   P S G   +      R+ G  +    +  RAL  +V         
Sbjct: 414 DDGGEGRFYLQYHFPPSSVGETGRVGGPGRRELGHGE----LAQRALAPIVPNQEQFPYT 469

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK-----GHVAAISC 166
           + ++  + +++G +  A++ G  +AL D    +        +  +L+         + S 
Sbjct: 470 VRLESTITESNGSSSMASVCGGCLALQDAGVPILRPVAGIAMGLILEPAAQNPDPESGSG 529

Query: 167 GMLCGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                + ++ D+   ED+  D+D      D+  I   Q   +    + +   + LN A++
Sbjct: 530 SSSPRHVVLSDILGSEDALGDMDFKVA-GDTDSITAFQMDIKVEGITLEIMSSALNQARE 588

Query: 226 RIADLIK 232
               +++
Sbjct: 589 GRRHILQ 595



 Score = 42.8 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 72/216 (33%), Gaps = 28/216 (12%)

Query: 32  FGDTHL----LTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRS 87
            G+T +      +A+             +      +    R++G  VKR+   GR     
Sbjct: 4   CGETMIYATACCSASPTGDGSFLPLTVNYAE---RFSAAGRTSGGYVKRD---GRPRDSE 57

Query: 88  QEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDC 147
             + R++ R LR +         Q++    V+  DG           +   + +      
Sbjct: 58  VLVSRLVDRPLRPMFGKGWANETQVLE--WVLSYDG-----------IHNPEPIAITAAA 104

Query: 148 SNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
           +        LK  VA +  G+L     +V+    +     +D     T    I+ ++G  
Sbjct: 105 AALLISDIPLKKAVAGVRVGLLPDEGYVVNPTVEQMKVSRLDLMVAGTRDA-ILMIEGFC 163

Query: 207 ERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           +    +++     L +    I  L  LQ +  + +V
Sbjct: 164 D--FLTEEQMIEALAVGSQAITSLC-LQMEDWAKKV 196


>gi|124487858|gb|ABN12012.1| hypothetical protein [Maconellicoccus hirsutus]
          Length = 138

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 18/140 (12%)

Query: 105 SALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
                 QI I  +V+QADG      +  A +AL D                 LK ++ A 
Sbjct: 1   ELYPFSQIDIYLEVLQADGSNYCTCVNAATLALIDAGI-------------PLKEYIIAC 47

Query: 165 SCGMLCG-YPIVDLDYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
           S  +  G  P++D+ + E+S    +     +  SG I  ++ S +   F  DH   +LN 
Sbjct: 48  SASLGNGDVPLIDVSHLEESLGGSNLTIAALPLSGQITVLEMSQK---FHIDHLPQVLNE 104

Query: 223 AKDRIADLIKLQKDVISNEV 242
           A +    + K+    +   +
Sbjct: 105 AMNGCQQIYKILDSAVKTHL 124


>gi|291226456|ref|XP_002733208.1| PREDICTED: exosome component 8-like [Saccoglossus kowalevskii]
          Length = 275

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 91/258 (35%), Gaps = 25/258 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+  ++R   +       AEGS LVK G+T ++     E   P      K G++ 
Sbjct: 22  VRPDGRELGEIRSTIVNIGSISTAEGSALVKLGNTTVICGIKAELCTPT-NDEPKKGFVV 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIII 114
               + P  +          G    ++Q + + I   L+   +V+   L    G    ++
Sbjct: 81  PNVDLPPLCSP-----RFRPGPPSEQAQVVSQFIADVLKDSKMVNHEDLCIAEGKIVWVL 135

Query: 115 DCDV--IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV---------LKGHVAA 163
            CD+  +  DG    A I     AL +      +   +    ++         ++    +
Sbjct: 136 YCDMMCLDYDGNVIDACIISLLAALRNVALPSIEVDEETAKPKLTSSTSSTMTVQSLPVS 195

Query: 164 ISCGMLCGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
            S  +     ++ D    E++        V  + G +  +      ++ S+      +  
Sbjct: 196 TSFAIFDNSILIADPTNEEENLATGVVTVVTNECGELCALHKPG-GSSLSESQIQECVKR 254

Query: 223 AKDRIADLIKLQKDVISN 240
           +  R  ++ KL  +  ++
Sbjct: 255 SFSRGDEIRKLLDETFNS 272


>gi|260578909|ref|ZP_05846813.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Corynebacterium jeikeium ATCC
           43734]
 gi|258602961|gb|EEW16234.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Corynebacterium jeikeium ATCC
           43734]
          Length = 764

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 98/257 (38%), Gaps = 36/257 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
            R+ GR    +R++ +  ++   A GS L + G+T +L   T      +E+++      T
Sbjct: 377 FRIDGRDSTTIRDLGIVVQLIPRAHGSALFERGETQIL-GVTTLDMLKMEQQIDSLGPET 435

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              +I   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 436 SKRYIH-HYNFPPYSTGETGRVGSPKRREIGHG----ALAERALTPVIPSRDDFPYTIRQ 490

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP- 173
             + + ++G T   ++  + ++L++                 LK  VA I+ G++ G   
Sbjct: 491 VSEALSSNGSTSMGSVCASTLSLYNAGV-------------PLKAPVAGIAMGLVTGKVG 537

Query: 174 ---------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
                    + D+   ED+  D+D     T    +  +Q   +      D     L  A+
Sbjct: 538 KAGKDKYVTLTDILGAEDAFGDMDFKVAGTPDF-VTALQLDTKLDGIPSDVLAEALQQAR 596

Query: 225 DRIADLIKLQKDVISNE 241
               ++++L ++ I + 
Sbjct: 597 TARLEILQLMEEAIDSP 613



 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 62/182 (34%), Gaps = 34/182 (18%)

Query: 12  REISLTRRVS-KYAEGSC---LVKFGDTHLL--TTAT--LEEKVPMWIRNTKHGWITAEY 63
           R I     +  + A+G+    L +  DT LL  T A+    E +  +             
Sbjct: 34  RSIRFETGLLARQADGAVTAYLDE--DTMLLSTTAASRQPREGIDFFPLTVDVEERMYSV 91

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           G +P   G+  +RE   GR G  +    R+I R LR           Q+I+   V+  D 
Sbjct: 92  GRIP---GSFFRRE---GRPGTDAILAARLIDRPLRPTFVRGLRNEVQVIVT--VLSMDP 143

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
             R           +D L      ++       + G V  +         +VD D+ E  
Sbjct: 144 KDR-----------YDVLAINGASASTQLSGLPVSGPVGGVRMA-----LVVDSDHPEGQ 187

Query: 184 TI 185
            +
Sbjct: 188 WV 189


>gi|68536209|ref|YP_250914.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           jeikeium K411]
 gi|123650906|sp|Q4JV61|PNP_CORJK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|68263808|emb|CAI37296.1| polyribonucleotide nucleotidyltransferase [Corynebacterium jeikeium
           K411]
          Length = 764

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 98/257 (38%), Gaps = 36/257 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
            R+ GR    +R++ +  ++   A GS L + G+T +L   T      +E+++      T
Sbjct: 377 FRIDGRDSTTIRDLGIVVQLIPRAHGSALFERGETQIL-GVTTLDMLKMEQQIDSLGPET 435

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              +I   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 436 SKRYIH-HYNFPPYSTGETGRVGSPKRREIGHG----ALAERALTPVIPSRDDFPYTIRQ 490

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP- 173
             + + ++G T   ++  + ++L++                 LK  VA I+ G++ G   
Sbjct: 491 VSEALSSNGSTSMGSVCASTLSLYNAGV-------------PLKAPVAGIAMGLVTGKVG 537

Query: 174 ---------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
                    + D+   ED+  D+D     T    +  +Q   +      D     L  A+
Sbjct: 538 KAGKDKYVTLTDILGAEDAFGDMDFKVAGTPDF-VTALQLDTKLDGIPSDVLAEALQQAR 596

Query: 225 DRIADLIKLQKDVISNE 241
               ++++L ++ I + 
Sbjct: 597 TARLEILQLMEEAIDSP 613



 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 62/182 (34%), Gaps = 34/182 (18%)

Query: 12  REISLTRRVS-KYAEGSC---LVKFGDTHLL--TTAT--LEEKVPMWIRNTKHGWITAEY 63
           R I     +  + A+G+    L +  DT LL  T A+    E +  +             
Sbjct: 34  RSIRFETGLLARQADGAVTAYLDE--DTMLLSTTAASRQPREGIDFFPLTVDVEERMYSV 91

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           G +P   G+  +RE   GR G  +    R+I R LR           Q+I+   V+  D 
Sbjct: 92  GRIP---GSFFRRE---GRPGTDAILAARLIDRPLRPTFVRGLRNEVQVIVT--VLSMDP 143

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
             R           +D L      ++       + G V  +         +VD D+ E  
Sbjct: 144 KDR-----------YDVLAINGASASTQLSGLPVSGPVGGVRMA-----LVVDSDHPEGQ 187

Query: 184 TI 185
            +
Sbjct: 188 WV 189


>gi|315502540|ref|YP_004081427.1| guanosine pentaphosphate synthetase i/polyribonucleotide
           nucleotidyltransferase [Micromonospora sp. L5]
 gi|315409159|gb|ADU07276.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Micromonospora sp. L5]
          Length = 789

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 86/253 (33%), Gaps = 34/253 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R +S    V     GS L + G+T +L   T      +E+ V   +   
Sbjct: 340 VRIDGRGPRDIRPLSAEVGVLPRVHGSALFERGETQIL-GVTTLNMLRMEQMVDT-LSPE 397

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 398 NRKRYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALIPVLPSREEFPYAIRQ 453

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP- 173
             + + ++G T   ++  + + L                   LK  VA I+ G++     
Sbjct: 454 VSEALGSNGSTSMGSVCASTLGLLSAGV-------------PLKAPVAGIAMGLISDEVD 500

Query: 174 -------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                  + D+   ED+  D+D     T    +  +Q   +      D   A L  A + 
Sbjct: 501 GKTQYVTLTDILGAEDAFGDMDFKVAGTRDF-VTALQLDTKLDGIPSDVLAAALQQAHEA 559

Query: 227 IADLIKLQKDVIS 239
              ++ + +  I 
Sbjct: 560 RQTILDVMQRAIE 572



 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 75/244 (30%), Gaps = 38/244 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           REI+ +   +++ A GS + + G+T +L+  T      E    +             G +
Sbjct: 23  REITFSTGRLARQAAGSVVAQLGETVVLSATTAGKQPRESFDFFPLTVDVEERMYAAGRI 82

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+  +RE   GR    +    R+I R LR           Q++     +       
Sbjct: 83  P---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETVLALDPQHPYD 136

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI  A ++                      G + A     + G  +      E +   
Sbjct: 137 VVAINAASMS-------------TKLSGLPFSGPIGATRVAHVDGQWVAFPTLEELARAT 183

Query: 187 VDANFV----MTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
            D              I+ V+  A               +++   + L  AK  I +L +
Sbjct: 184 FDMVVAGRTLADGEVAIMMVEAEATPNAVALISDGATAPTEEIVASGLEAAKPAIRELCR 243

Query: 233 LQKD 236
            Q +
Sbjct: 244 AQSE 247


>gi|302865980|ref|YP_003834617.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Micromonospora aurantiaca ATCC
           27029]
 gi|302568839|gb|ADL45041.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Micromonospora aurantiaca ATCC
           27029]
          Length = 796

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 86/253 (33%), Gaps = 34/253 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R +S    V     GS L + G+T +L   T      +E+ V   +   
Sbjct: 340 VRIDGRGPRDIRPLSAEVGVLPRVHGSALFERGETQIL-GVTTLNMLRMEQMVDT-LSPE 397

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 398 NRKRYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALIPVLPSREEFPYAIRQ 453

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP- 173
             + + ++G T   ++  + + L                   LK  VA I+ G++     
Sbjct: 454 VSEALGSNGSTSMGSVCASTLGLLSAGV-------------PLKAPVAGIAMGLISDEVD 500

Query: 174 -------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                  + D+   ED+  D+D     T    +  +Q   +      D   A L  A + 
Sbjct: 501 GKTQYVTLTDILGAEDAFGDMDFKVAGTRDF-VTALQLDTKLDGIPSDVLAAALQQAHEA 559

Query: 227 IADLIKLQKDVIS 239
              ++ + +  I 
Sbjct: 560 RQTILDVMQRAIE 572



 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 75/244 (30%), Gaps = 38/244 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           REI+ +   +++ A GS + + G+T +L+  T      E    +             G +
Sbjct: 23  REITFSTGRLARQAAGSVVAQLGETVVLSATTAGKQPRESFDFFPLTVDVEERMYAAGRI 82

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+  +RE   GR    +    R+I R LR           Q++     +       
Sbjct: 83  P---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETVLALDPQHPYD 136

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI  A ++                      G + A     + G  +      E +   
Sbjct: 137 VVAINAASMS-------------TKLSGLPFSGPIGATRVAHVDGQWVAFPTLEELARAT 183

Query: 187 VDANFV----MTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
            D              I+ V+  A               +++   + L  AK  I +L +
Sbjct: 184 FDMVVAGRTLADGEVAIMMVEAEATPNAVALISDGATAPTEEIVASGLEAAKPAIRELCR 243

Query: 233 LQKD 236
            Q +
Sbjct: 244 AQSE 247


>gi|270293225|ref|ZP_06199436.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. M143]
 gi|270279204|gb|EFA25050.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. M143]
          Length = 775

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 355 VRPDGRKVDEIRPLDAQVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 414

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 415 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 470

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 471 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 517

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 518 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 576

Query: 233 LQKDVI 238
           + +  I
Sbjct: 577 VIEATI 582



 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 51  RELVVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 110

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 111 ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 164

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 165 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLL 211

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 212 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 260


>gi|241116894|ref|XP_002401660.1| polyribonucleotide nucleotidyltransferase, putative [Ixodes
           scapularis]
 gi|215493204|gb|EEC02845.1| polyribonucleotide nucleotidyltransferase, putative [Ixodes
           scapularis]
          Length = 670

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 89/248 (35%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R+I+    +   A GS L   G+T  L + T    +   I ++  G    
Sbjct: 305 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYKE 364

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S    +  +A S R+ G      ++  RA+  ++         I +  +
Sbjct: 365 RFMLNYIFPPYSVNEVMPMKAPSRREVGHG----KLAWRAINPILPNKVQFPYSIRVVAE 420

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
             +++G +  A +  + +AL                   +K  VA I+ G++        
Sbjct: 421 TTESNGSSSMATVCSSSLALMYAGV-------------PIKAPVAGIAMGLIKEGKKFAV 467

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   + +          L  A+     +++ 
Sbjct: 468 LSDILGDEDYFGDMDFKVAGTSEG-ITALQMDIKISGVDFKIMKVALEQARLGRLHILEQ 526

Query: 234 QKDVISNE 241
              VIS  
Sbjct: 527 MNKVISKP 534



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 33/229 (14%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           +++ A+G+  VK G++ LL TA +    +E +  +     +  +    G +P   G   K
Sbjct: 12  IARQADGAVTVKMGNSVLLCTAVVAKKAKEGIGFFPLTINYREMAYAAGKIP---GGFFK 68

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--RTAAITGA 133
           RE   G+   R   + R+I R +R +   + +      + C V+  D  T     AI GA
Sbjct: 69  RE---GKASDREVLVSRLIDRPIRPLFHPAFVNET--HVTCSVLSYDPETPVDILAIIGA 123

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
             AL                       VAA   G++ G  +++       T  +D     
Sbjct: 124 SAALS-------------LSPAPYLEIVAASKVGLINGEFVLNPALELLKTSQLDLVVAG 170

Query: 194 T-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           T DS  +VE    +E    S++     +    +    +IK+ K+ ++ E
Sbjct: 171 TSDSVMMVE----SEAHLLSEEQMLEAVKFGFESFQPVIKIIKE-LAEE 214


>gi|268611199|ref|ZP_06144926.1| polynucleotide phosphorylase/polyadenylase [Ruminococcus
           flavefaciens FD-1]
          Length = 704

 Score = 96.7 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 80/230 (34%), Gaps = 28/230 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  +++R ++    +     GS L   G T +LT ATL           +   +  
Sbjct: 314 RVDGRGIDEIRPLAAEVGLLPRVHGSGLFTRGQTQVLTIATLGPVSDAQRIDGLDEEESK 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
               +Y     S G          R+ G       +  RAL  V+         + +  +
Sbjct: 374 RYMHQYNFPSYSVGETKPSRGPGRREIGHG----ALAERALAPVIPSVDEFPYALRLVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           V+ ++G T   +I G+ +AL D                 +K  VA ISCG++        
Sbjct: 430 VLSSNGSTSQGSICGSTLALMDAGV-------------PIKAPVAGISCGLITKPDSDEF 476

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
             +VD+   ED   D+D     T  G I  +Q   +    +         
Sbjct: 477 MTMVDIQGLEDFFGDMDFKVGGTHKG-ITAIQVDIKVDGLTPAIIKEAFE 525



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 82/230 (35%), Gaps = 27/230 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    +   + GSC V++G+T ++   T      E V  +  +  +       G +
Sbjct: 15  RPLVVETGKTCGLSNGSCWVRYGETVVMANVTASAKPREGVDFFPLSVDYEERLYSVGKI 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+  KRE   G+   ++    R + R +R +          +++    ++ D    
Sbjct: 75  P---GSFTKRE---GKPTEKAILTSRCVDRPIRPLFPKDMRNDVSVVMTVLSVEPDNSPE 128

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            A +    +A+                     G ++ I+ G++ G  +++    + +  D
Sbjct: 129 IAGMIATSIAIS-------------ISDIPWNGPISGINVGLVDGEIVLNPTLEQRAKTD 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +      T    IV ++  A      +D     +    + I  ++   KD
Sbjct: 176 LVLTVAGTAE-KIVMIEAGANEVP--EDTMLEAIMKGHEEIKKMVAFIKD 222


>gi|325186086|emb|CCA20587.1| polyribonucleotide nucleotidyltransferase putative [Albugo
           laibachii Nc14]
          Length = 826

 Score = 96.7 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 83/249 (33%), Gaps = 16/249 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI---------R 52
           R  GR   Q+R+I+    +   A GS +   GDT  L + TL                  
Sbjct: 406 RFDGRPLAQIRQINARTSILPMAHGSAVFSRGDTQALCSVTLGSLDQGLRLRSATIDPSD 465

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
            +++      Y   P       +   ++ R  G       +  +A+  ++         I
Sbjct: 466 ESEYKHAILHYEFPPYCVNETGRLGGINRRMVGHG----ALAEKAILPILPSIEEFPYTI 521

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            +  ++  +DG +  A I G  +AL D    +E       +  V +   ++   G     
Sbjct: 522 RMTSEITGSDGSSSMATICGVSLALLDAGVPIEAPIAGISVGLVSEPRESSSRFGKY--R 579

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +         F  +  A++    ++ 
Sbjct: 580 LVTDILGSEDHYGDMDFKVAGTRKG-ITALQLDVKIPGVPPSVLFESIEKAREARYQILD 638

Query: 233 LQKDVISNE 241
                ++  
Sbjct: 639 SMDQTLAKP 647



 Score = 82.4 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 78/224 (34%), Gaps = 26/224 (11%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
            ++ A+G  +   G   +LTTA  +       +      +  +Y +   ++G  +  +  
Sbjct: 111 FARLADGGVMTTCGKCVILTTAVSQSG---RKKGKDFLPLMVDYRVKYYASG--IIPDTA 165

Query: 80  SGRQ-GGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
             ++  G  +EI   R+I R +R +     L   QII        D  +   AI     A
Sbjct: 166 RRKEFAGSDEEILQSRVIDRVIRPLFPKGFLEETQIIATVHSYDPDNDSLVLAINSTSAA 225

Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
           L                     G V  +    + G  +++    +        N +   +
Sbjct: 226 LA-------------TSDIPWDGPVGCVRVVQVDGQLVLNPTESQKEAAT--LNILYAGN 270

Query: 197 -GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
               + ++  AE     +      L  A D +AD++K Q+++I 
Sbjct: 271 QKRTIMIE--AEGEQIDEKRLSEALRFAHDGVADVLKAQRELIK 312


>gi|306832712|ref|ZP_07465849.1| polyribonucleotide nucleotidyltransferase [Streptococcus bovis ATCC
           700338]
 gi|304425168|gb|EFM28297.1| polyribonucleotide nucleotidyltransferase [Streptococcus bovis ATCC
           700338]
          Length = 727

 Score = 96.7 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 83/246 (33%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 IRPDGRRVDEIRPLDAEIDYLPKVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFLHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    +       L  AK    +++ 
Sbjct: 480 ILTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILKEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           L +  I
Sbjct: 539 LIEATI 544



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 86/232 (37%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           R + +    V+K A G+ +V++G++ +L+ A + +K      +     +       G  P
Sbjct: 13  RPLVVEIGQVAKQANGAAVVRYGESTILSAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R +         Q+I        D     
Sbjct: 73  ---GGFNKRE---GRPTTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +    + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVAYIDGEFIINPSAAQKEASLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S+D     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKDA-INMVESGAKE--LSEDIMLEALLKGHEAVRELIAFQEEIVA 222


>gi|161833811|ref|YP_001598007.1| polynucleotide phosphorylase/polyadenylase [Candidatus Sulcia
           muelleri GWSS]
 gi|187611304|sp|A8Z660|PNP_SULMW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|152206301|gb|ABS30611.1| putative polyribonucleotide nucleotidyltransferase [Candidatus
           Sulcia muelleri GWSS]
          Length = 728

 Score = 96.7 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/251 (22%), Positives = 100/251 (39%), Gaps = 36/251 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR  + +R I           GS +   G+T  L+T TL   +   +    +  + 
Sbjct: 339 IRLDGRSLDDIRNICSQVDCLPGVHGSAIFTRGETQALSTVTLGSSLD--VNKIDNAIMR 396

Query: 61  A------EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           A       Y   P STG     + VS R+ G       +  RAL++++  +      I +
Sbjct: 397 AKQRFYLHYNFPPFSTGEIKLLKGVSRREIGHG----NLAQRALKNIIPTTY----TIRV 448

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----C 170
             DV++++G +  A +  + +AL D                ++K  V+ IS G++     
Sbjct: 449 VSDVLESNGSSSMATVCASTLALMDSGI-------------IVKRPVSGISMGLIMNYLT 495

Query: 171 GYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
           G  I+  DL   ED   D+D     T+ G +   Q   + +  + D     +  AK  + 
Sbjct: 496 GEAIILSDLLGDEDYIGDMDFKITGTEYG-MTACQMDIKISGITYDVLSYTIFKAKKGLL 554

Query: 229 DLIKLQKDVIS 239
            +IK     +S
Sbjct: 555 FIIKKMLTTLS 565



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 83/243 (34%), Gaps = 39/243 (16%)

Query: 4   SGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGW 58
            GR       +S+    +++ A GS +V+ G+T LL T  +    +E          +  
Sbjct: 14  DGRA------LSIETGELARKANGSAVVRMGNTSLLATVVISKESKEDFKFIPLTIDYRE 67

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
             +  G +P   G  +KRE   GR         R++ R LR +   +     QI+I   +
Sbjct: 68  KYSAGGKIP---GGYIKRE---GRPYDEEILTMRLVDRLLRPLFKDNYYNEIQIMIS--L 119

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +  D              L D L  +   +         +G V+ +    +    I++  
Sbjct: 120 LSYDINV-----------LPDGLAGLVASTAVSISEISFQGPVSTVRIIRINDAFIINPG 168

Query: 179 YGEDSTID-------VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             E    D            V   + +I+ V+G  E    S+      +  A   I   I
Sbjct: 169 IEEIKKSDFYLDLDLDLDLIVGGTNNYIILVEG--EMREISEIEMMEAIVKAHKYIQLQI 226

Query: 232 KLQ 234
           + Q
Sbjct: 227 EAQ 229


>gi|288904442|ref|YP_003429663.1| polynucleotide phosphorylase (PNPase) [Streptococcus gallolyticus
           UCN34]
 gi|306830475|ref|ZP_07463645.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325977438|ref|YP_004287154.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288731167|emb|CBI12715.1| polynucleotide phosphorylase (PNPase) [Streptococcus gallolyticus
           UCN34]
 gi|304427500|gb|EFM30602.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325177366|emb|CBZ47410.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 727

 Score = 96.7 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 83/246 (33%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 IRPDGRRVDEIRPLDAEIDYLPKVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFLHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    +       L  AK    +++ 
Sbjct: 480 ILTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILKEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           L +  I
Sbjct: 539 LIEATI 544



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 86/232 (37%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           R + +    V+K A G+ +V++G++ +L+ A + +K      +     +       G  P
Sbjct: 13  RPLVVEIGQVAKQANGAAVVRYGESTILSAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R +         Q+I        D     
Sbjct: 73  ---GGFNKRE---GRPTTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +    + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVAYIDGEFIINPSAAQKEASLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S+D     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKDA-INMVESGAKE--LSEDIMLEALLKGHEAVRELIAFQEEIVA 222


>gi|254696416|ref|ZP_05158244.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260760788|ref|ZP_05873131.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260671220|gb|EEX58041.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 2
           str. 86/8/59]
          Length = 528

 Score = 96.7 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 82/230 (35%), Gaps = 26/230 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR  + +R I     +     GS L   G+T  +  ATL       + +   G    
Sbjct: 317 RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYKE 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++  +      I    +
Sbjct: 377 SFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPAAEQFPYTIRAVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A + G  +AL D                 +   VA I+ G++  G     
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGV-------------PIVRPVAGIAMGLIKEGERFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           + D+   ED   D+D     T+ G I  +Q   +    +++     L  A
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTEFG-ITSLQMDIKIDGITEEIMKVALEQA 528



 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 84/248 (33%), Gaps = 40/248 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R ++L    +++ A+G+ L  +G+T +L T       +     +     +   T   G +
Sbjct: 14  RPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEKTYAAGKI 73

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           P   G   KRE   GR       + R+I R +R +         Q++I   V+Q D    
Sbjct: 74  P---GGYFKRE---GRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVIT--VLQHDLENN 125

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               ++  A  AL                     G ++    G + G  +++ +  E   
Sbjct: 126 PDILSMVAASAAL-------------TISGVPFMGPISGARVGYIDGEYVLNPNIDEMPE 172

Query: 185 IDVDANFVMTDSGHIV---EVQGSAERATFSQDHF---------FAMLNLAKDRIADLIK 232
             +D     T    ++   E Q   E        F          A++ LA+    +   
Sbjct: 173 SKLDLVVAGTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRD 232

Query: 233 LQKDVISN 240
            Q + +S 
Sbjct: 233 FQPEDLSE 240


>gi|304440007|ref|ZP_07399900.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371499|gb|EFM25112.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 697

 Score = 96.7 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 95/235 (40%), Gaps = 31/235 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           RE+ +T   V++ A G+ LV++GDT +L TAT      E +  +  +  +       G +
Sbjct: 12  REMRVTIGKVAEQANGAALVEYGDTVVLVTATASKKPREGIDFFPLSVDYEEKMYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   ++    R+I R LR +         Q++     +  D    
Sbjct: 72  P---GGFIKRE---GRPSEKAILTARLIDRPLRPLFPEGYRNDVQVVATALAVDQDNQPD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +AL                     G   ++  GM+ G  +++    + +   
Sbjct: 126 IVAMVGSSIAL-------------TISDIPFDGPTGSVFVGMVDGEYVINPTEEQRAKSK 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI----KLQKDV 237
           ++ N   T S  I+ V+  A+    S++     +    + I  +     ++Q++V
Sbjct: 173 IELNLAGTKSA-IMMVEAGAK--IVSEEEMLGAILKGHEEIKKICEFIEEIQREV 224



 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 91/239 (38%), Gaps = 26/239 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R  GR  +++R +S    + +   GS L K G T +L+  TL    E +V   + +    
Sbjct: 312 RPDGRALDEIRPLSSEVGLFRRTHGSGLFKRGQTQVLSITTLAGLSEVQVIDGLGDDTPK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G+         R+ G       +  RAL  V+         I +  +
Sbjct: 372 RYIHHYNFPPYSVGDTKPMRGPGRREIGHG----ALAERALIPVLPTEEEFPYAIRVVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-- 175
           V+ ++G +  A++ G+ ++L D                 +K  VA I+ G++  + ++  
Sbjct: 428 VLSSNGSSSQASVCGSTLSLMDAGV-------------PIKQPVAGIAMGLIEEHGVIKI 474

Query: 176 --DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
             D+   ED   D+D     T  G I  +Q   +     ++     L  A+     ++ 
Sbjct: 475 LTDIQGLEDHFGDMDFKVAGTREG-ITAIQMDIKVEGIKKEILEEALEKARIARLQILD 532


>gi|293335353|ref|NP_001170333.1| hypothetical protein LOC100384304 [Zea mays]
 gi|224030955|gb|ACN34553.1| unknown [Zea mays]
 gi|224035157|gb|ACN36654.1| unknown [Zea mays]
          Length = 393

 Score = 96.7 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 94/261 (36%), Gaps = 33/261 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R++ +T       +GS  V+ G+TH++   T++  V  +      G + 
Sbjct: 24  LRVDGRHSFDFRKLKITFG---REDGSSEVQLGETHVMGYVTVQL-VQPYRDRPNEGTLA 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSR------QI 112
                 P +  +        GR G  + E+ R+I R LR    VD+ +L          +
Sbjct: 80  IFTEFSPMADPS-----FEPGRPGELAIELGRVIDRGLRESRAVDMESLCVVAGKHVWSV 134

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH-------------MEDCSNKFQLSQVLKG 159
            +D  ++   G    AA   A  AL    +              + D   +  L   +  
Sbjct: 135 RVDLHILDNGGNLIDAANIAALAALSTFRRPECTVGGDDGQQVTVHDPEVRDPLPLTIHH 194

Query: 160 HVAAISCGMLC--GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
              A++          ++D  Y E++ +      ++  +G +  +Q +      S     
Sbjct: 195 MPIAVTFAYFGEGNIVVLDPTYKEEAVMGGRMTAIVNSNGDVCAIQKAGGEGVMS-SVIM 253

Query: 218 AMLNLAKDRIADLIKLQKDVI 238
             L +A  + AD+    K  +
Sbjct: 254 QCLRIASVKAADITSKIKKAV 274


>gi|326333597|ref|ZP_08199836.1| polyribonucleotide nucleotidyltransferase [Nocardioidaceae
           bacterium Broad-1]
 gi|325948613|gb|EGD40714.1| polyribonucleotide nucleotidyltransferase [Nocardioidaceae
           bacterium Broad-1]
          Length = 753

 Score = 96.7 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 92/252 (36%), Gaps = 30/252 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R +     V     GS L + G+T +L   TL+    E+    +   KH
Sbjct: 346 VRIDGRGLADIRPLHSEVGVIPRVHGSALFERGETQILGVTTLDMLKMEQQLDTLSPEKH 405

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 406 RRYMHKYIFPPFSTGETGRVGSPKRREVGHG----ALARRALLPVLPSREEFPYAIRQLS 461

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + + ++G T   ++  + ++L +                 LK  VA I+ G++ G     
Sbjct: 462 EAMGSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLISGEIDGE 508

Query: 173 ----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T    +  +Q   +      +     LN AKD   
Sbjct: 509 TKYVALTDILGAEDAFGDMDFKVAGTSEF-VTALQLDTKLDGIPAEVLAQALNQAKDART 567

Query: 229 DLIKLQKDVISN 240
            ++ +  + I  
Sbjct: 568 TILDVMHEAIGG 579



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 69/245 (28%), Gaps = 39/245 (15%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPM-----WIRNTKHGWITAEYGM 65
           R +     +  + A GS      D  +L +AT   K P      +             G 
Sbjct: 21  RTVKFETGLLARQAAGSVTAYLDDETMLLSATTVSKQPKDHFDFFPLTIDVEERMYAAGK 80

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P S           GR G  +    R+I R LR           Q++I    +  D   
Sbjct: 81  IPGSFF------RSEGRPGEDAILTCRLIDRPLRPTFKKGLRNEVQVVITVMALDPDQPY 134

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A ++                      G V  +   ++ G  +    + +    
Sbjct: 135 DVLAINAASMSTQLSGL-------------PFSGPVGGVRVALIEGQWVAFPTHSQLENA 181

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATFSQDH----------FFAMLNLAKDRIADLI 231
             D         T    I+ V+  +   T+                  L+ AK  I  L+
Sbjct: 182 VFDMVVAGRVTETGDVAIMMVEAESTEQTWDLVQSGAQAPTEPIVAGGLDAAKPFIKQLV 241

Query: 232 KLQKD 236
           + Q +
Sbjct: 242 EAQAE 246


>gi|300933063|ref|ZP_07148319.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           resistens DSM 45100]
          Length = 787

 Score = 96.7 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 98/251 (39%), Gaps = 32/251 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-----TATLEEKVPMWIRNTK 55
            R+ GR    +R++ +  ++   A GS L + G+T +L      T  +E+++      T 
Sbjct: 402 FRIDGRDATTIRDLGIVVQLVPRAHGSALFERGETQILGVTTLDTLKMEQQIDSLGTETS 461

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I   Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 462 KRYIH-HYNFPPFSTGETGRVGSPKRREIGHG----ALAERALVPVIPSRDEFPYTIRQV 516

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            + + ++G T   ++  + ++L++                 LK  VA I+ G++ G    
Sbjct: 517 SEAMGSNGSTSMGSVCASTLSLYNAGV-------------PLKAPVAGIAMGLVTGKVGN 563

Query: 174 ------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                 + D+   ED+  D+D     T+   +  +Q   +      D     L  A+   
Sbjct: 564 KDKYVTLTDILGAEDAFGDMDFKVAGTEDF-VTALQLDTKLDGIPSDVLAEALGQARTAR 622

Query: 228 ADLIKLQKDVI 238
            ++++L +D I
Sbjct: 623 LEILQLMEDAI 633



 Score = 43.2 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 90/259 (34%), Gaps = 37/259 (14%)

Query: 12  REISLTRRVS-KYAEGSC---LVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEY 63
           R +     +  + A+G+    L +  DT LL+T T      E +  +             
Sbjct: 65  RTVRFESGLLARQADGAVTAYLDE--DTMLLSTTTASRNPREGIDFFPLTVDVEERMYAA 122

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC------- 116
           G +P   G+  +RE   GR G  +    R+I R LR           Q+I+         
Sbjct: 123 GRIP---GSFFRRE---GRPGTEAILAARLIDRPLRPTFVKGLRNEVQVIVTVLSMDPQE 176

Query: 117 --DVI---------QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS 165
             DV+         Q  G   ++A+ G  +AL     H E     F   + L   V  + 
Sbjct: 177 MYDVLAINAASASTQLSGLPVSSAVGGVRMALVVDEDHPEGQWVAFPTREQLSASVFELV 236

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG-HIVEVQGSAERATF-SQDHFFAMLNLA 223
                  P+           D +   +M ++G     V+  A+ A   ++      +  A
Sbjct: 237 VAGRVTEPVKGARGRRTKGGDTNVAVMMVEAGATADAVERIAQGAPAPTEAVVAEGIEAA 296

Query: 224 KDRIADLIKLQKDVISNEV 242
           K  IA L + Q D +S  +
Sbjct: 297 KPFIATLCEAQ-DALSRAI 314


>gi|293364915|ref|ZP_06611632.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis
           ATCC 35037]
 gi|291316365|gb|EFE56801.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis
           ATCC 35037]
          Length = 754

 Score = 96.7 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 334 VRPDGRKVDEIRPLDAQVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 393

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 394 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 449

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 450 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 496

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 497 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 555

Query: 233 LQKDVI 238
           + +  I
Sbjct: 556 VIEATI 561



 Score = 84.8 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS ++++G++ +LT A + +K      +     +       G  P
Sbjct: 30  RELIVETGQVAKQANGSVVIRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 89

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 90  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDDNASAPM 143

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 144 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLL 190

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 191 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 239


>gi|227486455|ref|ZP_03916771.1| polynucleotide phosphorylase/polyadenylase [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227235636|gb|EEI85651.1| polynucleotide phosphorylase/polyadenylase [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 718

 Score = 96.7 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 95/248 (38%), Gaps = 29/248 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNT 54
           +R  GR+  ++R +S    V     GS L + G T +L+  TL       +       + 
Sbjct: 311 IRPDGRELTEIRPLSAEAGVLPRVHGSGLFQRGQTQVLSIVTLGSPADSQLIDGLNIEDV 370

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +  ++  +Y   P   G+         R+ G       +  RAL  V+         + +
Sbjct: 371 EKRYMH-QYNFPPFCVGDVRPLRGPGRREIGHGH----LAERALVPVLPDEKDFPYTMRV 425

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-- 172
             +V+ ++G +  A+I G+ ++L D                 +K  VA I+ G++     
Sbjct: 426 VSEVLSSNGSSSQASICGSTLSLMDAGV-------------PIKKPVAGIAMGLIKEDDS 472

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G I  +Q   + +  +++     L  AKD    +
Sbjct: 473 ISILTDIQGLEDHLGDMDFKVAGTRDG-ITALQMDMKISGITEEVLRQSLADAKDARFRI 531

Query: 231 IKLQKDVI 238
           + + +  I
Sbjct: 532 LDVIEAAI 539



 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 76/223 (34%), Gaps = 27/223 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
           +  +T    ++ A G+CL++ GDT LL TA       E +  +             G +P
Sbjct: 14  DFEVTIGKYAEQANGACLIQSGDTTLLVTAVASEKPREGIDFFPLICDFQEKLYAVGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   G+    +  I R + R LR +         QII     +  D     
Sbjct: 74  ---GGFLRRE---GKASDEATLIARQMDRPLRPLFPEDYYNDVQIIATVLSMDHDHLPDP 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
               GA +AL                     G V A   G + G  +V+ +  +     +
Sbjct: 128 LTTIGASIAL-------------GISDIPFNGPVGACMVGKVDGKLVVNPNEEDRKKSQL 174

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           +        G I  V+  A      +      + LA D I D+
Sbjct: 175 ELTVA-GRKGAINMVEAGANE--LDESEMLEAMLLALDEIGDI 214


>gi|308276640|gb|ADO26539.1| Polynucleotide phosphorylase/polyadenylase [Corynebacterium
           pseudotuberculosis I19]
          Length = 767

 Score = 96.3 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 93/253 (36%), Gaps = 30/253 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
            R+ GR    +R++ +   +   A GS L + G+T +L   TL+    E+    +  T  
Sbjct: 382 FRIDGRGVTDIRDLGVEVELIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLSPTSS 441

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 442 KRYIHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERALIPVIPSREEFPYTIRQVS 497

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + + ++G T   ++  + ++L++                 LK  VA I+ G++       
Sbjct: 498 EALGSNGSTSMGSVCASTLSLYNAGV-------------PLKAPVAGIAMGLVSDEIDGE 544

Query: 173 ----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T    +  +Q   +      +   + L  A +   
Sbjct: 545 TRYVALTDILGAEDAFGDMDFKVAGTRDF-VTALQLDTKLDGIPSEVLASALAQAYEARE 603

Query: 229 DLIKLQKDVISNE 241
            +++   +VI + 
Sbjct: 604 AILETMAEVIESP 616



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 79/245 (32%), Gaps = 30/245 (12%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYG 64
           R I      ++K A+GS    +  G T LL T T      E    +             G
Sbjct: 46  RTIRFETGQLAKQADGSVTTYLDDG-TMLLATTTASKQPREGFDFFPLTVDVEERMYAAG 104

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR           Q++I    +  +  
Sbjct: 105 RIP---GSFFRRE---GRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSMDPEDY 158

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-----LKGHVAAISCGMLCGYPIVDL-- 177
               AI GA  A       +       +++ +      KG   A          + +L  
Sbjct: 159 YDVVAINGASAATQLSGLPVSGPVGGVRMALIADEEHPKGQWIAFPTHEQHEKALFELVV 218

Query: 178 -----DYGEDSTIDVDANFVMTDSG---HIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
                   +      D   +M ++G   ++VE       A  +++     L  AK  I  
Sbjct: 219 AGRLVAKKQGHKTVEDVAIMMVEAGATENVVEKIKDGAPAP-TEEIVAQGLEAAKPFIEV 277

Query: 230 LIKLQ 234
           L + Q
Sbjct: 278 LCRAQ 282


>gi|300858688|ref|YP_003783671.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686142|gb|ADK29064.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 767

 Score = 96.3 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 93/253 (36%), Gaps = 30/253 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
            R+ GR    +R++ +   +   A GS L + G+T +L   TL+    E+    +  T  
Sbjct: 382 FRIDGRGVTDIRDLGVEVELIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLSPTSS 441

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 442 KRYIHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERALIPVIPSREEFPYTIRQVS 497

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + + ++G T   ++  + ++L++                 LK  VA I+ G++       
Sbjct: 498 EALGSNGSTSMGSVCASTLSLYNAGV-------------PLKAPVAGIAMGLVSDEIDGE 544

Query: 173 ----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T    +  +Q   +      +   + L  A +   
Sbjct: 545 TRYVALTDILGAEDAFGDMDFKVAGTRDF-VTALQLDTKLDGIPSEVLASALAQAYEARE 603

Query: 229 DLIKLQKDVISNE 241
            +++   +VI + 
Sbjct: 604 AILETMAEVIESP 616



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 79/245 (32%), Gaps = 30/245 (12%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYG 64
           R I      ++K A+GS    +  G T LL T T      E    +             G
Sbjct: 46  RTIRFETGQLAKQADGSVTTYLDDG-TMLLATTTASKQPREGFDFFPLTVDVEERMYAAG 104

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR           Q++I    +  +  
Sbjct: 105 RIP---GSFFRRE---GRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSMDPEDY 158

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-----LKGHVAAISCGMLCGYPIVDL-- 177
               AI GA  A       +       +++ +      KG   A          + +L  
Sbjct: 159 YDVVAINGASAATQLSGLPVSGPVGGVRMALIADEEHPKGQWIAFPTHEQHEKALFELVV 218

Query: 178 -----DYGEDSTIDVDANFVMTDSG---HIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
                   +      D   +M ++G   ++VE       A  +++     L  AK  I  
Sbjct: 219 AGRLVAKKQGHKTVEDVAIMMVEAGATENVVEKIKDGAPAP-TEEIVAQGLEAAKPFIEV 277

Query: 230 LIKLQ 234
           L + Q
Sbjct: 278 LCRAQ 282


>gi|306825739|ref|ZP_07459078.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432100|gb|EFM35077.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 754

 Score = 96.3 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 334 VRPDGRKVDEIRPLDAQVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 393

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 394 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 449

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 450 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 496

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 497 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 555

Query: 233 LQKDVI 238
           + +  I
Sbjct: 556 VIEATI 561



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 30  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 89

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 90  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 143

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 144 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 190

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 191 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 239


>gi|302206397|gb|ADL10739.1| Polynucleotide phosphorylase/polyadenylase [Corynebacterium
           pseudotuberculosis C231]
 gi|302330953|gb|ADL21147.1| Polyribonucleotide nucleotidyltransferase [Corynebacterium
           pseudotuberculosis 1002]
          Length = 767

 Score = 96.3 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 93/253 (36%), Gaps = 30/253 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
            R+ GR    +R++ +   +   A GS L + G+T +L   TL+    E+    +  T  
Sbjct: 382 FRIDGRGVTDIRDLGVEVELIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLSPTSS 441

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 442 KRYIHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERALIPVIPSREEFPYTIRQVS 497

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + + ++G T   ++  + ++L++                 LK  VA I+ G++       
Sbjct: 498 EALGSNGSTSMGSVCASTLSLYNAGV-------------PLKAPVAGIAMGLVSDEIDGE 544

Query: 173 ----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T    +  +Q   +      +   + L  A +   
Sbjct: 545 TRYVALTDILGAEDAFGDMDFKVAGTRDF-VTALQLDTKLDGIPSEVLASALAQAYEARE 603

Query: 229 DLIKLQKDVISNE 241
            +++   +VI + 
Sbjct: 604 AILETMAEVIESP 616



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 79/245 (32%), Gaps = 30/245 (12%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYG 64
           R I      ++K A+GS    +  G T LL T T      E    +             G
Sbjct: 46  RTIRFETGQLAKQADGSVTTYLDDG-TMLLATTTASKQPREGFDFFPLTVDVEERMYAAG 104

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR           Q++I    +  +  
Sbjct: 105 RIP---GSFFRRE---GRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSMDPEDY 158

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-----LKGHVAAISCGMLCGYPIVDL-- 177
               AI GA  A       +       +++ +      KG   A          + +L  
Sbjct: 159 YDVVAINGASAATQLSGLPVSGPVGGVRMALIADEEHPKGQWIAFPTHEQHEKALFELVV 218

Query: 178 -----DYGEDSTIDVDANFVMTDSG---HIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
                   +      D   +M ++G   ++VE       A  +++     L  AK  I  
Sbjct: 219 AGRLVAKKQGHKTVEDVAIMMVEAGATENVVEKIKDGAPAP-TEEIVAQGLEAAKPFIEV 277

Query: 230 LIKLQ 234
           L + Q
Sbjct: 278 LCRAQ 282


>gi|325681163|ref|ZP_08160693.1| polyribonucleotide nucleotidyltransferase [Ruminococcus albus 8]
 gi|324107085|gb|EGC01371.1| polyribonucleotide nucleotidyltransferase [Ruminococcus albus 8]
          Length = 704

 Score = 96.3 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 79/222 (35%), Gaps = 27/222 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  +++R ++    V     GS +   G T ++T  TL           +      
Sbjct: 314 RVDGRGIDEIRPLAAEVGVLPRVHGSGIFTRGQTQVMTVCTLGPISDAQKLDGLDEETSK 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
               +Y     S G          R+ G       +  RAL  V+         I    +
Sbjct: 374 RYMHQYNFPSYSVGETRPSRGPGRREIGHG----ALAERALVPVLPSVEEFPYAIRCVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           V+ ++G T   +I G+ +AL D                 +K  VA ISCG++        
Sbjct: 430 VLSSNGSTSQGSICGSTLALMDAGV-------------PIKEPVAGISCGLITKEDGSWM 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
            +VD+   ED   D+D     T +G I  +Q   +    + D
Sbjct: 477 TMVDIQGLEDFYGDMDFKVGGTKNG-ITAIQVDIKVDGLTMD 517



 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 77/230 (33%), Gaps = 29/230 (12%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    +   A GSC V++G+T ++   T      E V  +  +          G +
Sbjct: 15  RPVVVETGKTCGLANGSCWVRYGETVVMANVTASKKPREGVDFFPLSVDFEEKMYAVGRI 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+  KRE   G+   ++    R + R +R +          +++    +  D    
Sbjct: 75  P---GSFTKRE---GKASDKAILTSRCVDRPIRPLFPKDMRNDVTVVMTVLSVDPDNSPE 128

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              +    +A+                     G VA+I+ G + G  +++     +    
Sbjct: 129 ITGMIATAIAIS-------------ISDIPWNGPVASINVGYVDGELVLNPTL--EQRAK 173

Query: 187 VDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
              N  V   +  IV ++  AE      D     +      I  +++  K
Sbjct: 174 NKLNLTVAGSAEKIVMIEAGAEEIP--DDLMLKAIETGHAEIKKMVEFIK 221


>gi|326918964|ref|XP_003205754.1| PREDICTED: exosome complex exonuclease RRP45-like, partial
           [Meleagris gallopavo]
          Length = 403

 Score = 96.3 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 82/236 (34%), Gaps = 27/236 (11%)

Query: 26  GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGG 85
           G C+V+ G T +L   +  E VP        G +     + P +           GRQ  
Sbjct: 7   GCCVVELGKTRVLGQVS-CELVPPKPNRATEGILFCNLELSPMAAPG-----FEPGRQSE 60

Query: 86  RSQEIQRMIGRALR--SVVDLSAL----GSR--QIIIDCDVIQADGGTRTAAITGAWVAL 137
              ++ R+I R LR    +D  +L    G +  QI +D  ++  DG    AA     VAL
Sbjct: 61  LLVKVNRLIERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAGIVAL 120

Query: 138 HDCLQHMEDCSNKF----------QLSQVLKGHVAAISCGML--CGYPIVDLDYGEDSTI 185
               +       K            +   +      +S        Y +VD +  E+  +
Sbjct: 121 CHFRRPDVSVQGKEVTVYSPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVM 180

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           D      M     I  +Q S       +D       +   ++A++ +L +  + N+
Sbjct: 181 DGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSKITAVKVAEITELIQKALEND 235


>gi|156101467|ref|XP_001616427.1| exosome complex exonuclease [Plasmodium vivax SaI-1]
 gi|148805301|gb|EDL46700.1| exosome complex exonuclease, putative [Plasmodium vivax]
          Length = 518

 Score = 96.3 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 96/261 (36%), Gaps = 31/261 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+    R IS+         G+  V  G T ++   T  E V  + +    G I 
Sbjct: 19  LRLDGRKFEDSRNISI---YFLGEHGNVEVSIGHTKVICKIT-SEIVKPFDKRPNEGIIK 74

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL---GSRQII-- 113
               +   +  N       + +      EI+ +I R L+S  +++L +L     +++   
Sbjct: 75  VNLDIDSFTNVN------DNSQISDECLEIKNLIERILKSSNLLNLESLCIIPHKKVWCL 128

Query: 114 -IDCDVIQADGGTRTAAITGAWVALHD------------CLQHMEDCSNKFQLSQVLKGH 160
            ++  VI+ DG    +    A+  L               +   E  +N   LS      
Sbjct: 129 LVNIIVIENDGNLYDSCYLSAYSGLVHYRNNEVTVDSSGNIIIEEGETNYTPLSIHNTPI 188

Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +   +        ++D    E+  +    +  +  +G +V +      +  S +     +
Sbjct: 189 LTTFAYFNCEDICLIDPSIHEEEFMSSKLSVALNKNGKLVSILKPG-GSPISYEKILEAI 247

Query: 221 NLAKDRIADLIKLQKDVISNE 241
            LAK R+  ++K+ +D +  +
Sbjct: 248 ELAKKRVKSILKILEDALEED 268


>gi|331091291|ref|ZP_08340132.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330404738|gb|EGG84277.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 696

 Score = 96.3 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 83/250 (33%), Gaps = 26/250 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
           R  GR  +Q+R ++    +     GS +   G T  + T T          I        
Sbjct: 312 RPDGRAIDQIRPLAAEIDLIPRVHGSAMFTRGQTQ-ICTVTTLAPLSEAQRIDGLDEAET 370

Query: 60  TAEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  Y M   +  +    E    R  G R      +  RAL  V+         I    + 
Sbjct: 371 SKRY-MHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPTEEEFPYAIRTVSET 429

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY------ 172
            +++G T  A+I  + ++L                   +K  VA IS G++ G       
Sbjct: 430 FESNGSTSQASICASSMSLMAAGV-------------PIKSAVAGISAGLVTGDTDDDYL 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI- 231
            + D+   ED   D+D     T  G I  +Q   +    ++      +   K     ++ 
Sbjct: 477 VLTDIQGLEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAIARTKQARTYILD 535

Query: 232 KLQKDVISNE 241
           ++  + I+  
Sbjct: 536 EVMHNAIAEP 545



 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 79/226 (34%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    V+  A G+ L+ +G+T +L+TAT      E +  +  + ++       G +
Sbjct: 12  RTLRVDVGRVAAQANGAALMHYGETVVLSTATASEKPREGIDFFPLSVEYEEKLYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 72  P---GGFNKRE---GKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPDCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  +    G++ G  + + +  + +  D
Sbjct: 126 LTAMLGSAIATA-------------ISDIPFDGPTSTTQVGLIDGEFVFNPNAAQRAVSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +D     +  A +    +I+
Sbjct: 173 LQLTVASTRD-KVIMIEAGANEVP--EDKMIEAIFAAHEVNQQVIQ 215


>gi|315221320|ref|ZP_07863243.1| polyribonucleotide nucleotidyltransferase [Streptococcus anginosus
           F0211]
 gi|315189679|gb|EFU23371.1| polyribonucleotide nucleotidyltransferase [Streptococcus anginosus
           F0211]
          Length = 726

 Score = 96.3 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 83/242 (34%), Gaps = 28/242 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 IRPDGRKVDEIRPLDAEIDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIVDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIID 115
                 Y     S G   +     G  G R      +  RAL  V+  L       I + 
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEDFP-YAIRLV 431

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V++++G +  A+I    +AL                   +K  VA I+ G++      
Sbjct: 432 AEVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGSNY 478

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++
Sbjct: 479 TILTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITAEILQEALAQAKKARFEIL 537

Query: 232 KL 233
            L
Sbjct: 538 DL 539



 Score = 85.9 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 88/231 (38%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
           E+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P 
Sbjct: 14  ELVVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKYP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   GR    +    R+I R +R +         Q+I       AD     A
Sbjct: 73  --GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDADASAPMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +  G + G  +++    +     ++
Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVGYVNGELVINPSQEQKEASLLE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 175 LTVAGTKEA-INMVESGAKE--LSEEVMLEALLKGHEAVKELIAFQEEIVA 222


>gi|95932676|gb|ABF57675.1| chloroplast polyribonucleotide phosphorylase [Chlamydomonas
           reinhardtii]
          Length = 854

 Score = 96.3 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 86/246 (34%), Gaps = 32/246 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-------- 52
           +R  GR    +R ++    +     GS L   G+T  +  ATL                 
Sbjct: 415 VRADGRGVADIRPVTCRAGLLPRTHGSALFTRGETQSICVATLGSANDALRSDTMRKPDG 474

Query: 53  -NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
            + + G    +Y   P S G   +  A   R+ G  +    +  RAL  ++   A     
Sbjct: 475 EDPESGRFYLQYHFPPSSVGETGRTGAPGRRELGHGE----LAQRALAPILPDPAQFPYT 530

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-- 169
           + ++  + +++G +  A++ G  +A+ D                 +   VA I+ G++  
Sbjct: 531 VRVESTITESNGSSSMASVCGGCLAMMDAGV-------------PIARPVAGIAMGLILE 577

Query: 170 ---CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                  + D+   ED+  D+D   V  D   I   Q   +    + D     L  AK  
Sbjct: 578 SNGRNAVLSDILGSEDALGDMDFK-VAGDHDAITAFQMDIKVEGITLDIMAKALQQAKAG 636

Query: 227 IADLIK 232
              ++ 
Sbjct: 637 RRHILD 642



 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 81/236 (34%), Gaps = 29/236 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTH----LLTTATLEEKVPMWIRNTKHGWITAEYGMLP 67
           EI L    + + A G+ +   G+T        +A+             +      +    
Sbjct: 96  EIKLETGEIGRQANGAIMATAGETMLYATACCSASPTGDGSFTPLTVNYAE---RFSAAG 152

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
           R++G  VKR+   GR       + R++ R +R +         QI+    V+  DG    
Sbjct: 153 RTSGGFVKRD---GRPRDAEVLVSRLVDRPIRPMFAKGWANDTQILE--WVLSYDG---- 203

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTID 186
                  V   + L      +        LK  VA +  GM   G  I++    E  T  
Sbjct: 204 -------VNDPEPLAITAAAAALLISDIPLKKAVAGVRVGMSADGGFIINPTVEEMETSR 256

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           +D     T    ++ ++G  +    +++     L    + IA L   Q +  + +V
Sbjct: 257 LDLMVAGTRDA-VLMIEGFCD--FLTEEQMIEALGKGSEAIASLCD-QMEAWAKKV 308


>gi|291009326|ref|ZP_06567299.1| polynucleotide phosphorylase/polyadenylase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 747

 Score = 96.3 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 92/255 (36%), Gaps = 34/255 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R +S    V   A GS L + G+T +L   +      LE+ +      T
Sbjct: 344 VRIDGRGLTDIRSLSAEVGVIPRAHGSALFERGETQIL-GVSTLNMLRLEQTIDSLSPET 402

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              ++   Y   P STG   +  +   R+ G       +  RAL  V+         +  
Sbjct: 403 TKRYMH-HYNFPPYSTGETGRVGSPKRREIGHG----ALAERALIPVLPTREEFPYALRQ 457

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-- 172
             + + ++G T   ++  + ++L +                 LK  VA I+ G++     
Sbjct: 458 VSEALGSNGSTSMGSVCASTLSLLNAGV-------------PLKAPVAGIAMGLVSDEID 504

Query: 173 ------PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                  + D+   ED+  D+D     T    +  +Q   +      +     L  A+D 
Sbjct: 505 GKTHYVALTDILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPSEVLAQALGQARDA 563

Query: 227 IADLIKLQKDVISNE 241
              ++++  + I   
Sbjct: 564 RFTILEVMAEAIGKP 578



 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 73/235 (31%), Gaps = 32/235 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM--LPR 68
           R +      ++K A GS +    D  +L +AT   K P    +     +  E  M    R
Sbjct: 23  RTVRFETGRLAKQAAGSVVAYLDDDTMLLSATTASKQPKEHFDFFPLTVDVEERMYAAGR 82

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR    +    R+I R LR           Q+++    +         
Sbjct: 83  IPGSFFRRE---GRPSTDAILTCRLIDRPLRPSFVDGLRNEVQVVVTVMSLDPQDPYDVL 139

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           AI GA  +                      G V      ++ G  +    Y +      D
Sbjct: 140 AINGASASTQLSGL-------------PFSGPVGGTRMALIDGQWVAFPTYEQLERAVFD 186

Query: 189 ANF---VMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADL 230
                 ++ D   I+ V+  A   T           +++   A L  AK  I  L
Sbjct: 187 MVVAGRIVGDDVAIMMVEAEATEKTAGLVSAGAQAPTEEVVAAGLEAAKPFIRTL 241


>gi|157107418|ref|XP_001649768.1| exosome complex exonuclease rrp43 (ribosomal RNA processing protein
           43 [Aedes aegypti]
 gi|108884054|gb|EAT48279.1| exosome complex exonuclease rrp43 (ribosomal RNA processing protein
           43 [Aedes aegypti]
          Length = 274

 Score = 96.3 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 86/259 (33%), Gaps = 26/259 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+   +R +++     K A+GS +VK G+T ++     E   P        G++ 
Sbjct: 23  IRPDGREIGDLRPLAINFDSIKTADGSAIVKIGNTTVVCGIKAEL-APPKPVEPDTGYLV 81

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALG---SRQII-I 114
               + P S+          G     +Q     +  A+     V+L  L     + +  +
Sbjct: 82  PNIEISPLSSPKYR-----PGPPSEEAQVYSCSLADAILNSGCVNLKDLCITKEQLVWAL 136

Query: 115 DCDV--IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV----------LKGHVA 162
            CD+  +  DG    A++     ALH         +      +V          L     
Sbjct: 137 YCDLVCLDHDGCIFDASVIALVAALHTLRLPPVKHNPDTDEREVDEDAERIPLKLNSIPV 196

Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
             S  +  G  I D    E++         + DS  +  +  S       Q+     +  
Sbjct: 197 TTSFAVFGGRIIADPTAEEEALATSTITITICDS-TLSYINKSG-GDPLEQELLDKCIEN 254

Query: 223 AKDRIADLIKLQKDVISNE 241
           A  R   +  L + +  N+
Sbjct: 255 AMKREKSVRGLIRKMTKNK 273


>gi|78485473|ref|YP_391398.1| polynucleotide phosphorylase/polyadenylase [Thiomicrospira
           crunogena XCL-2]
 gi|123755229|sp|Q31GJ9|PNP_THICR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|78363759|gb|ABB41724.1| Polyribonucleotide nucleotidyltransferase [Thiomicrospira crunogena
           XCL-2]
          Length = 694

 Score = 96.3 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 88/247 (35%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     +     GS L   G+T  +   TL  +    + +   G    
Sbjct: 317 RIDGRDTQTIRSIDCQVGILPKVHGSALFTRGETQAIVVTTLGTEKDAKMVDDLTGSYND 376

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  R + +++  +      I +  +
Sbjct: 377 RFMLHYNFPPYSVGECGRVGSPGRREIGHGM----LARRGVAALLPTADEFPYTIRVVSE 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A + G  ++L      +                +A I+ G++        
Sbjct: 433 ITESNGSSSMATVCGTSMSLMHAGVPLAA-------------PIAGIAMGLVKEESGFAV 479

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T+ G +  +Q   +    +Q+     L  AK+    ++K 
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTEQG-VTALQMDIKITGITQEIMHIALKQAKEGRLHILKE 538

Query: 234 QKDVISN 240
            +  I +
Sbjct: 539 MEKAIGS 545



 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 65/193 (33%), Gaps = 24/193 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           E+      +++ A+G+ +V  GDT LL T                  +T +Y     + G
Sbjct: 14  EVRFETGEIARQADGAVMVAMGDTQLLVTVVG---AKNAKAGQDFFPLTVQYQEKAYAAG 70

Query: 72  ----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
                 +KRE   GR   +     R+I R +R +     +   Q+I     +  + GT  
Sbjct: 71  RIPGGFLKRE---GRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVVSLDPEIGTEV 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ G   AL                     G + A   G      I++    E    D+
Sbjct: 128 PAMLGTSAALSISGI-------------PFDGPIGAAVVGYKDNDYILNPSSQELQESDL 174

Query: 188 DANFVMTDSGHIV 200
           + +   T    ++
Sbjct: 175 ELSVAGTSDAVLM 187


>gi|134102361|ref|YP_001108022.1| polynucleotide phosphorylase/polyadenylase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|187611285|sp|A4FM22|PNP_SACEN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|133914984|emb|CAM05097.1| putative guanosine pentaphosphate synthetase and polyribonucleotide
           nucleotidyltransferase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 750

 Score = 96.3 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 92/255 (36%), Gaps = 34/255 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R +S    V   A GS L + G+T +L   +      LE+ +      T
Sbjct: 347 VRIDGRGLTDIRSLSAEVGVIPRAHGSALFERGETQIL-GVSTLNMLRLEQTIDSLSPET 405

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              ++   Y   P STG   +  +   R+ G       +  RAL  V+         +  
Sbjct: 406 TKRYMH-HYNFPPYSTGETGRVGSPKRREIGHG----ALAERALIPVLPTREEFPYALRQ 460

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-- 172
             + + ++G T   ++  + ++L +                 LK  VA I+ G++     
Sbjct: 461 VSEALGSNGSTSMGSVCASTLSLLNAGV-------------PLKAPVAGIAMGLVSDEID 507

Query: 173 ------PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                  + D+   ED+  D+D     T    +  +Q   +      +     L  A+D 
Sbjct: 508 GKTHYVALTDILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPSEVLAQALGQARDA 566

Query: 227 IADLIKLQKDVISNE 241
              ++++  + I   
Sbjct: 567 RFTILEVMAEAIGKP 581



 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 73/235 (31%), Gaps = 32/235 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM--LPR 68
           R +      ++K A GS +    D  +L +AT   K P    +     +  E  M    R
Sbjct: 26  RTVRFETGRLAKQAAGSVVAYLDDDTMLLSATTASKQPKEHFDFFPLTVDVEERMYAAGR 85

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR    +    R+I R LR           Q+++    +         
Sbjct: 86  IPGSFFRRE---GRPSTDAILTCRLIDRPLRPSFVDGLRNEVQVVVTVMSLDPQDPYDVL 142

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           AI GA  +                      G V      ++ G  +    Y +      D
Sbjct: 143 AINGASASTQLSGL-------------PFSGPVGGTRMALIDGQWVAFPTYEQLERAVFD 189

Query: 189 ANF---VMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADL 230
                 ++ D   I+ V+  A   T           +++   A L  AK  I  L
Sbjct: 190 MVVAGRIVGDDVAIMMVEAEATEKTAGLVSAGAQAPTEEVVAAGLEAAKPFIRTL 244


>gi|119717401|ref|YP_924366.1| polynucleotide phosphorylase/polyadenylase [Nocardioides sp. JS614]
 gi|187610316|sp|A1SLJ4|PNP_NOCSJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|119538062|gb|ABL82679.1| Polyribonucleotide nucleotidyltransferase [Nocardioides sp. JS614]
          Length = 742

 Score = 96.3 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 90/253 (35%), Gaps = 30/253 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R +     V     GS L + G+T +L   TL+    E+    +   KH
Sbjct: 339 VRIDGRGLADIRPLHAEVGVIPRVHGSALFERGETQILGVTTLDMLKMEQQLDTLSPEKH 398

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 399 RRYMHKYVFPPFSTGETGRVGSPKRREVGHG----ALARRALLPVLPTREEFPYAIRQLS 454

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + + ++G T   ++  + +AL                   LK  VA I+ G++ G     
Sbjct: 455 EAMGSNGSTSMGSVCASTLALLQAGV-------------PLKAPVAGIAMGLVSGEIDGQ 501

Query: 173 ----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T    +  +Q   +      +     L  A+D   
Sbjct: 502 LQYVALTDILGAEDAFGDMDFKVAGTREF-VTALQLDTKLDGIPAEVLAQALTQARDARL 560

Query: 229 DLIKLQKDVISNE 241
            ++ +  + I   
Sbjct: 561 TILDVMAEAIDEP 573



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 70/243 (28%), Gaps = 39/243 (16%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPM-----WIRNTKHGWITAEYGM 65
           R +     +  + A G+      +  +L +AT   K P      +             G 
Sbjct: 21  RTVKFETGLLARQAAGAVTAYLDEDTMLLSATTAGKHPKDHFDFFPLTIDVEERMYAAGK 80

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P S           GR G  +    R+I R LR           Q++I    +  D   
Sbjct: 81  IPGSFF------RSEGRPGEDAILTCRLIDRPLRPTFKKGLRNEVQVVITVMALNPDTPY 134

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A ++                      G V  +   ++ G  +    + +    
Sbjct: 135 DVLAINAASLSTQLSGL-------------PFSGPVGGVRVALIEGQWVAFPTHSQLENA 181

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
             D         T    I+ V+  A   T+          +++     L+ AK  I  L 
Sbjct: 182 VFDMVVAGRVTETGDVAIMMVEAEATEQTWDLVRSGTQAPTEEIVAGGLDAAKPFIKQLC 241

Query: 232 KLQ 234
           + Q
Sbjct: 242 EAQ 244


>gi|225867825|ref|YP_002743773.1| polyribonucleotide nucleotidyltransferase [Streptococcus equi
           subsp. zooepidemicus]
 gi|259534159|sp|C0MFB1|PNP_STRS7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225701101|emb|CAW97943.1| polyribonucleotide nucleotidyltransferase [Streptococcus equi
           subsp. zooepidemicus]
          Length = 714

 Score = 96.3 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 86/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----H 56
           +R  GR+ +++R ++          GS L   G T  L+  TL       I +       
Sbjct: 317 VRPDGRRVDEIRPLAAEIDFLPRVHGSGLFTRGQTQALSVLTLAPMGDTQIIDGLEPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +  A   R+ G       +  RAL  V+         I +  
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRQG-ITALQMDIKIEGITPQILEEALAQAKKARFEILD 538

Query: 233 LQKDVISNE 241
           L +  I+  
Sbjct: 539 LIEATIAEP 547



 Score = 81.7 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 85/231 (36%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
            + +    V+K A G+ +V++G++ +LT A + +K      +     +       G  P 
Sbjct: 14  PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR    +    R+I R +R +         Q+I        D     A
Sbjct: 73  --GGWMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASAPMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +    + G  I++ D  +     ++
Sbjct: 128 AMLGSSLALS-------------ISDIPFNGPIAGVQVAYVEGEFIINPDKAQQEASLLE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                T    I  V+  A+     +      L +    I +LI  Q+++++
Sbjct: 175 LTVAGTKDA-INMVESGAKE--LPEAIMLEALLVGHKAIQELIAFQEEIVA 222


>gi|17231888|ref|NP_488436.1| polynucleotide phosphorylase/polyadenylase [Nostoc sp. PCC 7120]
 gi|81770047|sp|Q8YP11|PNP_ANASP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|17133532|dbj|BAB76095.1| polyribonucleotide nucleotidyltransferase [Nostoc sp. PCC 7120]
          Length = 718

 Score = 96.3 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 91/247 (36%), Gaps = 20/247 (8%)

Query: 1   MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNT 54
           +R+ GR+ +Q+R +S    V  K   GS L   G T +L+  TL            ++  
Sbjct: 322 VRVDGRKLDQVRPVSSQVGVLPKRVHGSGLFNRGLTQVLSACTLGTPGDAQNLNDDLQTD 381

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +       Y   P S G      A   R+ G       +  RA+  V+         I +
Sbjct: 382 QSKRYLHHYNFPPFSVGETKPLRAPGRREIGHG----ALAERAILPVLPPKEQFPYVIRV 437

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             +V+ ++G T   ++ G+ +AL D    +    +   +  + +G              +
Sbjct: 438 VSEVLSSNGSTSMGSVCGSTLALMDAGVPILKPVSGAAMGLIKEGDEV---------RVL 488

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED   D+D     TD+G I  +Q   + +  S +     ++ AKD    ++   
Sbjct: 489 TDIQGIEDFLGDMDFKVAGTDAG-ITALQMDMKISGLSLEVIAQAIHQAKDARLHILDKM 547

Query: 235 KDVISNE 241
              I   
Sbjct: 548 LQTIDQP 554



 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 90/233 (38%), Gaps = 26/233 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           R+I L   +    A GS L++ GDT +L TAT     E +        +       G +P
Sbjct: 13  RDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRSPGREGIDFLPLTVDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   GR   ++    R+I R LR +         Q++     +        
Sbjct: 73  ---GGIMRRE---GRPPEKTILTSRLIDRPLRPLFPSWLRDDLQVVALTMSMDEQVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA +A                      G +AA+  G++    I++  Y E    D+
Sbjct: 127 LAVTGASIATLIA-------------KIPFNGPMAAVRVGLVGDDFIINPTYAEIEAGDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     +  G ++ V+  A +    +      ++   + + DLIK Q D+++ 
Sbjct: 174 DLVVAGSPHG-VIMVEAGANQ--LPERDIIEAIDFGYEAVRDLIKAQLDLVAE 223


>gi|307703168|ref|ZP_07640114.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis
           ATCC 35037]
 gi|307623243|gb|EFO02234.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis
           ATCC 35037]
          Length = 737

 Score = 95.9 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAQVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS ++++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGSVVIRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDDNASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|291550238|emb|CBL26500.1| polyribonucleotide nucleotidyltransferase [Ruminococcus torques
           L2-14]
          Length = 695

 Score = 95.9 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 83/250 (33%), Gaps = 26/250 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
           R  GR  +Q+R ++    +     GS +   G T  + T T          +        
Sbjct: 312 RPDGRAIDQIRPLAAEVDLIPRVHGSAMFTRGQTQ-ICTMTTLAPLSEAQKLDGLDEAEK 370

Query: 60  TAEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           T  Y M   +  +    E    R  G R      +  RAL  V+   +     I    + 
Sbjct: 371 TKRY-MHHYNFPSYSVGETRPSRGPGRREIGHGALAERALLPVLPSESEFPYAIRTVSET 429

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY------ 172
            +++G T  A++  + ++L                   +K  VA IS G++ G       
Sbjct: 430 FESNGSTSQASVCASSMSLMAAGV-------------PIKSAVAGISAGLVTGETDDDYL 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI- 231
            + D+   ED   D+D     T  G I  +Q   +    ++      +   K     ++ 
Sbjct: 477 VLTDIQGLEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAIAATKKARTYIMD 535

Query: 232 KLQKDVISNE 241
           ++    I+  
Sbjct: 536 EVMSKAIAEP 545



 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 77/226 (34%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    V+K A G+ L+ +GDT +L TAT      E +  +  + ++       G +
Sbjct: 12  RTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASDKPREGIDFFPLSVEYNERMYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 72  P---GGFNKRE---GKASENAILTDRVIDRPMRPLFPKDYRNDVTLENLVLSVDQDCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA +A                      G ++    G++ G  + +    +    D
Sbjct: 126 LTAMLGAALA-------------TSISDIPFDGPISTTQVGLVDGEFVFNPTAAQKEVSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A+     +      +  A D    +I 
Sbjct: 173 LALTVASTKE-KVIMIEAGAKEVP--EAKMIEAIFAAHDLNQKVIA 215


>gi|75909486|ref|YP_323782.1| polynucleotide phosphorylase/polyadenylase [Anabaena variabilis
           ATCC 29413]
 gi|123608898|sp|Q3M7Z9|PNP_ANAVT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|75703211|gb|ABA22887.1| 3' exoribonuclease [Anabaena variabilis ATCC 29413]
          Length = 718

 Score = 95.9 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 88/232 (37%), Gaps = 20/232 (8%)

Query: 1   MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNT 54
           +R+ GR+ +Q+R +S    V  K   GS L   G T +L+  TL            ++  
Sbjct: 322 VRVDGRKLDQVRPVSSQVGVLPKRVHGSGLFNRGLTQVLSACTLGTPGDAQNLNDDLQTD 381

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +       Y   P S G      A   R+ G       +  RA+  V+         I +
Sbjct: 382 QSKRYLHHYNFPPFSVGETKPLRAPGRREIGHG----ALAERAILPVLPPKEQFPYVIRV 437

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             +V+ ++G T   ++ G+ +AL D    +    +   +  + +G              +
Sbjct: 438 VSEVLSSNGSTSMGSVCGSTLALMDAGVPILKPVSGAAMGLIKEGDEV---------RVL 488

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            D+   ED   D+D     TD+G I  +Q   + +  S +     ++ AKD 
Sbjct: 489 TDIQGIEDFLGDMDFKVAGTDAG-ITALQMDMKISGLSLEVIAQAIHQAKDA 539



 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 90/233 (38%), Gaps = 26/233 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           R+I L   +    A GS L++ GDT +L TAT     E +        +       G +P
Sbjct: 13  RDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRSAGREGIDFLPLTVDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   GR   ++    R+I R LR +         QI+     +        
Sbjct: 73  ---GGIMRRE---GRPPEKTILTSRLIDRPLRPLFPSWLRDDLQIVALTMSMDEQVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA +A                      G +AA+  G++    I++  Y E    D+
Sbjct: 127 LAVTGASIATLIA-------------KIPFNGPMAAVRVGLVGDDFIINPTYAEIEAGDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     +  G ++ V+  A +    +      ++   + + DLIK Q D+++ 
Sbjct: 174 DLVVAGSPHG-VIMVEAGANQ--LPERDIIEAIDFGYEAVRDLIKAQLDLVAE 223


>gi|87123698|ref|ZP_01079548.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           RS9917]
 gi|86168267|gb|EAQ69524.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp.
           RS9917]
          Length = 691

 Score = 95.9 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 92/248 (37%), Gaps = 31/248 (12%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R+ GR  +++R IS    V  K   GS L + G T +L+TATL    P   +       +
Sbjct: 293 RVDGRGLDEVRPISAAAGVLPKRVHGSGLFQRGLTQVLSTATL--GTPSDAQEMDDLNPS 350

Query: 61  AE------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
            E      Y   P S G      +   R+ G       +  RA+  V+         + +
Sbjct: 351 TEKTYLHHYNFPPYSVGETKPMRSPGRREIGHG----ALAERAILPVLPAKDTFPYVVRV 406

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V+ ++G T   ++ G+ +AL D                 LK  V+  + G++     
Sbjct: 407 VSEVLSSNGSTSMGSVCGSTLALMDAGV-------------PLKSPVSGAAMGLIKEGDE 453

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     TD G I  +Q   +    +       +N A+     +
Sbjct: 454 VRILTDIQGIEDFLGDMDFKVAGTDKG-ITALQMDMKITGLAVSTVAEAVNQARPARLHI 512

Query: 231 IKLQKDVI 238
           ++     I
Sbjct: 513 LEKMMQAI 520



 Score = 95.9 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 87/219 (39%), Gaps = 33/219 (15%)

Query: 29  LVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGG 85
           +++ GDT +L TA   +  E +        +       G +P   G+ ++RE   GR   
Sbjct: 1   MIECGDTSVLVTATRSSGREGIDFLPLICDYEERLYAAGRIP---GSFMRRE---GRPPE 54

Query: 86  RSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----ADGGTRTAAITGAWVALHDCL 141
           R+  I R+I R +R +         QI+  C  +     AD      A+TGA +A     
Sbjct: 55  RATLISRLIDRPMRPLFPNWLRDDLQIVATCMSLDERVPAD----VLAVTGASMATLLAG 110

Query: 142 QHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVE 201
                            G +AA+  G+L    +++  Y E    D+D     T  G +V 
Sbjct: 111 I-------------PFHGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPEG-VVM 156

Query: 202 VQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           V+  A +    +      ++   + + +LIK Q++++  
Sbjct: 157 VEAGANQ--LPEQDVIEAIDFGYEAVCELIKAQQEILKQ 193


>gi|313889611|ref|ZP_07823255.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313122038|gb|EFR45133.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 742

 Score = 95.9 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 86/250 (34%), Gaps = 28/250 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GRQ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 328 IRPDGRQIDEIRPLDAQVDFLPKVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDEEYK 387

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIIID 115
                 Y     S G   +  A   R+ G       +  RAL  V+  L       I + 
Sbjct: 388 KRFMHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALAQVLPSLEDFP-YAIRLV 442

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V++++G +  A+I    +AL                   +K  VA I+ G++      
Sbjct: 443 AEVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGKNY 489

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I  +Q   +    +       L  AK    +++
Sbjct: 490 TVLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEALAQAKKARFEIL 548

Query: 232 KLQKDVISNE 241
            + +  I+  
Sbjct: 549 DVIEATIATP 558



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 86/231 (37%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
            + +    V+K A G+ +V++G++ +LT A + +K      +     +       G  P 
Sbjct: 25  PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP- 83

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR    +    R+I R +R +         Q+I        +      
Sbjct: 84  --GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEIQVINTVLSYDENASAPMV 138

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +  G + G  +++ D  +     ++
Sbjct: 139 AMFGSSLALS-------------ISDIPFNGPIAGVQVGYIDGQFVINPDKAQMEASLLE 185

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                +    I  V+  A+    S+D     L      I +LI  Q+++++
Sbjct: 186 LTVAGSKEA-INMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEEIVA 233


>gi|291546827|emb|CBL19935.1| polyribonucleotide nucleotidyltransferase [Ruminococcus sp. SR1/5]
          Length = 697

 Score = 95.9 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 74/231 (32%), Gaps = 31/231 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  Q+R ++    +     GS +   G T  + T T    +    R         
Sbjct: 312 RPDGREIRQIRPLAAETDIIPRVHGSAMFTRGQTQ-ICTVTTLAPLTEAQRLDGLDEFET 370

Query: 62  E------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G          R+ G       +  RAL  V+         I   
Sbjct: 371 SKRYMHHYNFPSYSVGETKPSRGPGRREIGHG----ALAERALVPVLPTEEEFPYAIRTV 426

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            +  +++G T  A+I  + ++L                   ++  VA ISCG++ G    
Sbjct: 427 SETFESNGSTSQASICASTMSLMAAGV-------------PIRKPVAGISCGLVTGETDD 473

Query: 173 ---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
               + D+   ED   D+D     T  G I  +Q   +    ++      +
Sbjct: 474 DYIVLTDIQGLEDFFGDMDFKVAGTHDG-ITAIQMDIKIHGLTRPIVEEAI 523



 Score = 81.7 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 85/234 (36%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+K A G+ L+ +GDT +L TAT      E +  +  + ++       G +
Sbjct: 12  RTLTVDIGRVAKQANGAALMHYGDTTVLATATASKEPREGIDFFPLSVEYEEKMYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          ++     +  +    
Sbjct: 72  P---GGFNKRE---GKASEHAILTSRVIDRPMRPLFPKDYRNDVTLVDMVMSVDPECNPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  A    GM+ G  I++    + +  D
Sbjct: 126 IPAMLGSSIA-------------TCISDIPFDGPCATTQVGMIDGEFIINPTLAQKAVSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    ++ ++  A      +D     +  A +   ++IK    +++ 
Sbjct: 173 LQLTVASTRE-KVIMIEAGANEIP--EDKMIEAIYKAHEVNQEIIKFIDQIVAE 223


>gi|302344869|ref|YP_003813222.1| polyribonucleotide nucleotidyltransferase [Prevotella
           melaninogenica ATCC 25845]
 gi|302149149|gb|ADK95411.1| polyribonucleotide nucleotidyltransferase [Prevotella
           melaninogenica ATCC 25845]
          Length = 742

 Score = 95.9 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 88/250 (35%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           R+ GR  +++R I           GS L + G+T  L+T TL  K+   + +      + 
Sbjct: 316 RMDGRATDEIRPIWCEIDTLPMPHGSSLFQRGETMSLSTCTLGTKMDEKMVDNVLEKSYQ 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P  TG    +  V  R+ G       +  R L+  +         + +   
Sbjct: 376 RFLLHYNFPPFCTGEAKAQRGVGRREIGHGH----LAWRGLKGQIPADF--PYTVRLVSQ 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D    M             K  V+ I+ G++        
Sbjct: 430 ILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVSGIAMGLIKNPGEDKY 476

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G +   Q   +    S +     L  AK     ++
Sbjct: 477 AVLSDILGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFEILEKALMQAKAAREHIL 535

Query: 232 KLQKDVISNE 241
            +  + I+  
Sbjct: 536 NIMTETIAEP 545



 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 87/236 (36%), Gaps = 27/236 (11%)

Query: 3   LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       IS+    V+K A+G+ +++ G+T LL T    +E VP            
Sbjct: 2   PDGRT------ISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYR 55

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y    R  G   KRE   G+         R++ R LR +          + +   ++ 
Sbjct: 56  EQYAAAGRYPGGFTKRE---GKANDDEILTSRLVDRVLRPLFPSDYHCE--VYVQVMLLS 110

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           V   D L  +   +        ++   + +    + G  +++  + 
Sbjct: 111 ADG-----------VDQPDALAGLAASAALAASDIPIEHTTSEVRVARVNGEYVINPTFE 159

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +    D+D     T   +I+ V+G  E    S+      L  A + I  + ++Q++
Sbjct: 160 QMKEADMDLMVGATKD-NIMMVEG--EMDEVSEQDLIGALKAAHEAIKPMCEMQEE 212


>gi|288801722|ref|ZP_06407164.1| polyribonucleotide nucleotidyltransferase [Prevotella
           melaninogenica D18]
 gi|288335764|gb|EFC74197.1| polyribonucleotide nucleotidyltransferase [Prevotella
           melaninogenica D18]
          Length = 742

 Score = 95.9 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 88/250 (35%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           R+ GR  +++R I           GS L + G+T  L+T TL  K+   + +      + 
Sbjct: 316 RMDGRATDEIRPIWCEIDTLPMPHGSSLFQRGETMSLSTCTLGTKMDEKMVDNVLEKSYQ 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P  TG    +  V  R+ G       +  R L+  +         + +   
Sbjct: 376 RFLLHYNFPPFCTGEAKAQRGVGRREIGHGH----LAWRGLKGQIPADF--PYTVRLVSQ 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D    M             K  V+ I+ G++        
Sbjct: 430 ILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVSGIAMGLIKNPGEDKY 476

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G +   Q   +    S +     L  AK     ++
Sbjct: 477 AVLSDILGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFEILEKALMQAKAAREHIL 535

Query: 232 KLQKDVISNE 241
            +  + I+  
Sbjct: 536 NIMTETIAEP 545



 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 88/236 (37%), Gaps = 27/236 (11%)

Query: 3   LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       IS+    V+K A+G+ +++ G+T LL T    +E VP            
Sbjct: 2   PDGRT------ISIETGKVAKQADGAAVLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYR 55

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y    R  G   KRE   G+         R++ R LR +          + +   ++ 
Sbjct: 56  EQYAAAGRYPGGFTKRE---GKANDDEILTSRLVDRVLRPLFPSDYHCE--VYVQVMLLS 110

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           V   D L  +   ++       ++   + +    + G  +++  + 
Sbjct: 111 ADG-----------VDQPDALAGLAASASLAASDIPIEHTTSEVRVARVNGEYVINPTFE 159

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +    D+D     T   +I+ V+G  E    S+      L  A + I  + ++Q++
Sbjct: 160 QMKEADMDLMVGATKD-NIMMVEG--EMDEVSEQDLIGALKAAHEAIKPMCEMQEE 212


>gi|168333339|ref|ZP_02691623.1| Polyribonucleotide nucleotidyltransferase [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 698

 Score = 95.9 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 80/224 (35%), Gaps = 29/224 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWI- 59
           R  GR  ++MR +     +     GS +   G T +LT  TL        I       + 
Sbjct: 314 RPDGRALDEMRILKAEVDLIPRVHGSGMFTRGQTQVLTITTLAPLSEAQIIDGLDELDVL 373

Query: 60  ---TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      +V  R+ G       +  RAL  V+         + +  
Sbjct: 374 KRYMHHYNFPPFSVGEAKPPRSVGRREIGHG----ALAERALIPVLPTEEEFPYAMRLVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +V+ ++G T  A+I G+ +AL                   +K  VA IS G++ G     
Sbjct: 430 EVLSSNGSTSQASICGSTLALMAAGV-------------PIKAPVAGISVGLVTGESTED 476

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
              + D+   ED   D+D     + +G I  +Q   +    + +
Sbjct: 477 FVLLTDIQGLEDFFGDMDFKVGGSKNG-ITAIQMDMKIDGLTYE 519



 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 78/226 (34%), Gaps = 27/226 (11%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           RE+ +        A G+ LV +G+T +L TA      +E +  +  +  +       G +
Sbjct: 12  RELKVEIGKMAELANGAALVTYGETCILATAVASDKPKEGIDFFPLSVNYEEKIYAIGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR   ++    R+I R LR +          I      ++ D    
Sbjct: 72  P---GGFLKRE---GRPSDKAVLTSRVIDRPLRPLFPKDYRNDVVITTTVMSVEQDCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             ++  A + L                     G V ++  G++ G  +++    +     
Sbjct: 126 ITSMIAASLVL-------------DISEIPFNGPVGSVFVGLVDGEIVINPTMAQREKSQ 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      +    ++ ++  A     S++     +        +++K
Sbjct: 173 LALTVS-SSKDKVMMIEAGANE--ISEEVMLEAIYKGHQANQEIVK 215


>gi|326791492|ref|YP_004309313.1| polyribonucleotide nucleotidyltransferase [Clostridium lentocellum
           DSM 5427]
 gi|326542256|gb|ADZ84115.1| polyribonucleotide nucleotidyltransferase [Clostridium lentocellum
           DSM 5427]
          Length = 705

 Score = 95.9 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 78/232 (33%), Gaps = 31/232 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +++R ++    +     G+ L   G T +L T T    +           +  
Sbjct: 315 RPDGRALDEIRSLAAEVDLVPRVHGTGLFTRGQTQVL-TVTTLAALSEMQTLDGLDELEI 373

Query: 62  E------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P S G      A   R+ G       +  RAL  V+         I   
Sbjct: 374 SKRYMHHYNFPPYSVGEARAPRAPGRREIGHG----ALAERALVPVLPTEQEFPYAIRTV 429

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            +V+ ++G T  A+I G+ ++L                   +K  VA IS G++ G    
Sbjct: 430 SEVLSSNGSTSQASICGSTLSLMAAGV-------------PIKAPVAGISVGLVTGETAD 476

Query: 173 ---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
               + D+   ED   D+D     T  G I  +Q   +    + +     L 
Sbjct: 477 DFVLLTDIQGLEDFFGDMDFKVGGTHKG-ITAIQMDMKIKGLTPEIIKGALE 527



 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 72/204 (35%), Gaps = 25/204 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           RE+S+    V+  A GS  V++GDT +L T       +E +  +  +  +       G L
Sbjct: 12  RELSVEIGKVAGLANGSATVRYGDTMILATVVAADAPKEGIDFFPLSVNYEEKFYSVGRL 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE+   R   ++    R+I R +R +          I      +  D    
Sbjct: 72  P---GGYIKRES---RPSEKAILTSRVIDRPMRPLFPKDYRNDVVITTTVLSVDQDCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+  A + +                     G V ++  G++ G  + + +  E    D
Sbjct: 126 VTAMIAASLVV-------------DISDIPFAGPVGSVQVGLVDGNLVFNPNQEERQKSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERAT 210
           +      T    ++ ++  A    
Sbjct: 173 LALTVSSTKD-KVMMIEAGANEVP 195


>gi|251781688|ref|YP_002995990.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390317|dbj|BAH80776.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 714

 Score = 95.9 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 86/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           G  L   G T  L+        E ++   +     
Sbjct: 317 IRPDGRKIDEIRPLDAEVDFLPKVHGLGLFTRGQTQALSVLTLAPMGETQIIDGLAPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +  A   R+ G       +  RAL  V+         I +  
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALEQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + A  +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIAGITPQILEEALAQAKKARFEILD 538

Query: 233 LQKDVISNE 241
           + ++ I+  
Sbjct: 539 VIEETIAEP 547



 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 86/231 (37%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
            + +    V+K A G+ +V++G++ +LT A + +K      +     +       G  P 
Sbjct: 14  PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR    +    R+I R +R +         Q+I        +     A
Sbjct: 73  --GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +  G + G  I++ D  +     ++
Sbjct: 128 AMFGSSLALS-------------ISDIPFNGPIAGVQVGYIDGEFIINPDKEQMEASLLE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                +    I  V+  A+    S+D     L      I +LI  Q+ +++
Sbjct: 175 LTVAGSKEA-INMVESGAKE--LSEDIMLEALLKGHQAIQELIAFQEQIVA 222


>gi|170056939|ref|XP_001864258.1| exosome complex exonuclease RRP43 [Culex quinquefasciatus]
 gi|167876545|gb|EDS39928.1| exosome complex exonuclease RRP43 [Culex quinquefasciatus]
          Length = 274

 Score = 95.9 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 91/259 (35%), Gaps = 26/259 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+   +R +++       A+GS +VK G+T ++     E   P      + G++ 
Sbjct: 23  IRPDGREVGDLRPLAINFGSITSADGSSIVKIGNTTVVCGIKAEL-APPKPVEPETGFLV 81

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALG---SRQII-I 114
               + P  +          G     +Q     +  A+     V+L  L     + +  +
Sbjct: 82  PNIEISPLCSPKYR-----PGPPSEEAQVYSCSLADAILNSGCVNLKDLCITKEKLVWAL 136

Query: 115 DCDV--IQADGGTRTAAITGAWVALH-DCLQHMEDCSNKFQLSQVLKGH---------VA 162
            CD+  +  DG    A++     ALH   L  M   ++  +   + +             
Sbjct: 137 YCDLVCLDHDGCVFDASVIALVAALHTLTLPRMRHNADTDEREVLEEEPREALTLSSIPV 196

Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
             S  +LCG  + D    E++         + D+  +  +  S       Q+     +  
Sbjct: 197 TTSFAVLCGRIVADPTAEEEALATCTITITICDA-TLSYINKSG-GDPVEQELLDQCIEN 254

Query: 223 AKDRIADLIKLQKDVISNE 241
           A  R   +  L K ++ N+
Sbjct: 255 AMKREKSVRALIKTMVKNK 273


>gi|330466373|ref|YP_004404116.1| polynucleotide phosphorylase/polyadenylase [Verrucosispora maris
           AB-18-032]
 gi|328809344|gb|AEB43516.1| polynucleotide phosphorylase/polyadenylase [Verrucosispora maris
           AB-18-032]
          Length = 789

 Score = 95.9 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 86/251 (34%), Gaps = 30/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R ++    V     GS L + G+T +L   TL     E+    +   K 
Sbjct: 340 VRIDGRGPRDIRPLNAEVGVLPRVHGSALFERGETQILGVTTLNMLRMEQALDTLSPEKS 399

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 400 KRYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALIPVLPSREEFPYAIRQVS 455

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
           + + ++G T   ++  + + L                   LK  VA I+ G++       
Sbjct: 456 EALGSNGSTSMGSVCASTLGLLSAGV-------------PLKAPVAGIAMGLISDEVDGK 502

Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T    +  +Q   +      D   A L  A +   
Sbjct: 503 TQYVTLTDILGAEDAFGDMDFKVAGTRDF-VTALQLDTKLDGIPSDVLAAALQQAHEARQ 561

Query: 229 DLIKLQKDVIS 239
            ++ + +  I 
Sbjct: 562 TILDVMQRAIE 572



 Score = 72.8 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 79/244 (32%), Gaps = 38/244 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           REI+ +   +++ A GS + + G+T +L+  T     +E+   +             G +
Sbjct: 23  REITFSTGRLARQAAGSVIAQLGETVVLSATTAGKQPKEQFDFFPLTVDVEERMYAAGRI 82

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+  +RE   GR    +    R+I R LR           Q++     +       
Sbjct: 83  P---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETILALDPQHPYD 136

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI  A ++                      G + A     + G  +    + E S   
Sbjct: 137 VVAINAASMS-------------TKLSGLPFSGPIGATRMAHVDGQWVAFPTHEELSRAT 183

Query: 187 VDANFV----MTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
            D              I+ V+  A   T           +++   + L  AK  I +L +
Sbjct: 184 FDMVVAGRALADGDVAIMMVEAEATEHTVKLVADGAPAPTEEVVASGLEAAKPAIRELCR 243

Query: 233 LQKD 236
            Q +
Sbjct: 244 AQSE 247


>gi|170039450|ref|XP_001847547.1| exosome complex exonuclease RRP43 [Culex quinquefasciatus]
 gi|167863024|gb|EDS26407.1| exosome complex exonuclease RRP43 [Culex quinquefasciatus]
          Length = 274

 Score = 95.9 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 91/259 (35%), Gaps = 26/259 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+   +R +++       A+GS +VK G+T ++     E   P      + G++ 
Sbjct: 23  IRPDGREVGDLRPLAINFGSITSADGSSIVKIGNTTVVCGIKAEL-TPPKPVEPETGFLV 81

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALG---SRQII-I 114
               + P  +          G     +Q     +  A+     V+L  L     + +  +
Sbjct: 82  PNIEISPLCSPKYR-----PGPPSEEAQVYSCSLADAILNSGCVNLKDLCITKEKLVWAL 136

Query: 115 DCDV--IQADGGTRTAAITGAWVALH-DCLQHMEDCSNKFQLSQVLKGH---------VA 162
            CD+  +  DG    A++     ALH   L  M   ++  +   + +             
Sbjct: 137 YCDLVCLDHDGCVFDASVIALVAALHTLTLPRMRHNADTDEREVLEEEPREALTLSSIPV 196

Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
             S  +LCG  + D    E++         + D+  +  +  S       Q+     +  
Sbjct: 197 TTSFAVLCGRIVADPTAEEEALATSTITITICDA-TLSYINKSG-GEPVEQELLDQCIEN 254

Query: 223 AKDRIADLIKLQKDVISNE 241
           A  R   +  L K ++ N+
Sbjct: 255 AMKREKSVRALIKTMVKNK 273


>gi|322390877|ref|ZP_08064385.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           parasanguinis ATCC 903]
 gi|321142390|gb|EFX37860.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           parasanguinis ATCC 903]
          Length = 740

 Score = 95.9 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAQVDFLPRVHGSGLFTRGQTQALSILTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGEIIINPTQEQAEQSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|307564828|ref|ZP_07627356.1| polyribonucleotide nucleotidyltransferase [Prevotella amnii CRIS
           21A-A]
 gi|307346550|gb|EFN91859.1| polyribonucleotide nucleotidyltransferase [Prevotella amnii CRIS
           21A-A]
          Length = 751

 Score = 95.9 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 91/232 (39%), Gaps = 22/232 (9%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWITAEYGMLPRS 69
           R IS+    V+K A+G+ +++ G+T LL T    +E VP             +Y    R 
Sbjct: 14  RTISIETGKVAKQADGAAMLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYSAAGRF 73

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   KRE   G+         R++ R LR +         ++ +   ++ ADG      
Sbjct: 74  PGGFTKRE---GKANDDEILTSRLVDRVLRPLFPSD--YHTEVYVQIMLLSADG------ 122

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
                V   D L      +     +  ++  ++ +    + G  I++  + +    D+D 
Sbjct: 123 -----VDQPDALAGFAASAALAASTIPIEYPISEVRVARIKGEYIINPTFDQMKEADMDI 177

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
               T   +I+ V+G  E    S+      L  A + I  + +LQ++ +S E
Sbjct: 178 MVGATKD-NIMMVEG--EMDEVSEQELIGALKAAHEAIKPMCELQEE-LSKE 225



 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 85/235 (36%), Gaps = 30/235 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           R+ GR  +++R I           GS + + G+T  L+T TL  K+   + +      + 
Sbjct: 325 RMDGRATDEIRHIWCEVDALPMPHGSAIFQRGETMSLSTCTLGTKMDEKMVDNVLEKSYQ 384

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL++ +         + +   
Sbjct: 385 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKNQIPTDF--PYTVRLVSQ 438

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D    M             K  V+ I+ G++        
Sbjct: 439 ILESNGSSSMATVCAGTLALFDAGVPM-------------KKPVSGIAMGLIKNPGEDKY 485

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
             + D+   ED   D+D     T  G I   Q   +    S +     L  AK  
Sbjct: 486 AILSDILGDEDHLGDMDFKTTGTRDG-ITATQMDIKCDGLSYEILEKALMQAKAG 539


>gi|327274166|ref|XP_003221849.1| PREDICTED: exosome complex exonuclease RRP45-like [Anolis
           carolinensis]
          Length = 439

 Score = 95.9 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 95/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR+    R + ++   S Y  G C+V+ G T +L   + E   P   R T+ G +  
Sbjct: 23  RLDGRECYDYRNLRISFG-SDY--GCCIVELGKTRILGQVSCELVTPKPNRATE-GILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              + P ++          GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSPMASPA-----FEPGRQPELLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  V+  +G    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHVLNHNGNLIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGMLCGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S          +VD    E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFQQGTFLLVDPSEQEERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +   ++A++  L +  + N+
Sbjct: 253 ITGVKVAEITALIQKALEND 272


>gi|322517679|ref|ZP_08070542.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           vestibularis ATCC 49124]
 gi|322123667|gb|EFX95259.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           vestibularis ATCC 49124]
          Length = 745

 Score = 95.5 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 86/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----H 56
           +R  GR+ +++R +           GS L   G T  L+  TL       + +       
Sbjct: 317 VRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPMSDTQLVDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFLHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSIEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + +  +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRRG-ITALQMDIKISGITPAILEEALAQAKVARFEILD 538

Query: 233 LQKDVISNE 241
           + + VI+  
Sbjct: 539 VIEAVIAEP 547



 Score = 79.4 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 82/232 (35%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           R + +    V+K A G+ +V++GDT +L+ A + +K      +     +       G  P
Sbjct: 13  RPLVVEVGHVAKQANGAVVVRYGDTTVLSAAVMSKKMATADFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +         I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVAYAAEDFIINPSASDKDVSQL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D     T    I  V+  A+    S+D     L    + I +L+  Q  +++
Sbjct: 174 DLTVAGTKEA-INMVESGAQE--LSEDIMLQALLKGHEAIQELVDFQNYIVA 222


>gi|228477816|ref|ZP_04062444.1| polyribonucleotide nucleotidyltransferase [Streptococcus salivarius
           SK126]
 gi|228250508|gb|EEK09722.1| polyribonucleotide nucleotidyltransferase [Streptococcus salivarius
           SK126]
          Length = 741

 Score = 95.5 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 85/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----H 56
           +R  GR+ +++R +           GS L   G T  L+  TL       + +       
Sbjct: 317 VRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPMSDTQLVDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFLHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSVEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + +  +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRQG-ITALQMDIKISGITPAILEEALAQAKVARFEILD 538

Query: 233 LQKDVISNE 241
           + +  I+  
Sbjct: 539 VIESAIAEP 547



 Score = 78.6 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 83/232 (35%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           R + +    V+K A G+ +V++GDT +L+TA + +K      +     +       G  P
Sbjct: 13  RPLVVEVGQVAKQANGAVVVRYGDTTVLSTAVMSKKMATADFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +         I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVAYAAEDFIINPSAADKEVSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D     T    I  V+  A+    S+D     L    + I +L+  Q  +++
Sbjct: 174 DLTVAGTKEA-INMVESGAQE--LSEDIMLQALLKGHEAIQELVDFQNYIVA 222


>gi|237785717|ref|YP_002906422.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|257096678|sp|C4LJ74|PNP_CORK4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|237758629|gb|ACR17879.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 775

 Score = 95.5 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 95/253 (37%), Gaps = 30/253 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
            R+ GR    +R++ +   +   A GS L + G+T +L   TL+    E+    +    H
Sbjct: 391 FRIDGRGVEDIRDLDVEVDLVPRAHGSSLFQRGETQILGVTTLDTLKMEQQVDSLGPVDH 450

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL+ ++         I    
Sbjct: 451 RRYIHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERALKPMIPSRDDFPYTIRQVS 506

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
           + + ++G T   ++  + ++L++                 LK  VA I+ G++ G     
Sbjct: 507 EALGSNGSTSMGSVCASTLSLYNAGV-------------PLKAPVAGIAMGLVSGEVKGK 553

Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T+   I  +Q   +      D     L  A++   
Sbjct: 554 MTYVTLTDILGAEDAFGDMDFKVAGTEDF-ITALQLDTKLDGIPSDVLAGALKQAREARL 612

Query: 229 DLIKLQKDVISNE 241
           +++    +VI   
Sbjct: 613 EILNTMAEVIDEP 625



 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 52/157 (33%), Gaps = 16/157 (10%)

Query: 12  REISLTRR-VSKYAEGSC---LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEY 63
           R I L    +++ A GS    L +  DT +L     ++   E    +             
Sbjct: 45  RTIRLETGQLARQANGSVVAYLDE--DTMMLSTTTASSKPREGFDFFPLTVDVEERMYAA 102

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           G +P   G+  +RE   GR G  +    R+I R LR           Q+I+    +    
Sbjct: 103 GRIP---GSFFRRE---GRPGTDAILACRLIDRPLRPTFVKGLRNEVQVIVTVMSLDPKD 156

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160
                AI  A  +       +       +++ ++   
Sbjct: 157 MYDVVAINAASASTQLSGLPVSGPVGGVRMALIVDDD 193


>gi|159036978|ref|YP_001536231.1| polynucleotide phosphorylase/polyadenylase [Salinispora arenicola
           CNS-205]
 gi|187611286|sp|A8M758|PNP_SALAI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157915813|gb|ABV97240.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Salinispora arenicola CNS-205]
          Length = 786

 Score = 95.5 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 87/251 (34%), Gaps = 30/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R ++    V     GS L + G+T +L   TL     E+    +   K 
Sbjct: 340 VRIDGRGPRDIRPLTAEVGVLPRVHGSALFERGETQILGVTTLNMLRMEQSLDTLSPEKS 399

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 400 KRYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALIPVLPSREEFPYAIRQVS 455

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
           + + ++G T   ++  + + L                   LK  VA I+ G++       
Sbjct: 456 EALGSNGSTSMGSVCASTLGLLSAGV-------------PLKAPVAGIAMGLISDEVEGK 502

Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T    +  +Q   +      D   A L  A +   
Sbjct: 503 TRYVTLTDILGAEDAFGDMDFKVAGTQEF-VTALQLDTKLDGIPSDVLAAALQQAYEARQ 561

Query: 229 DLIKLQKDVIS 239
            ++++ +  I 
Sbjct: 562 TILEVMQAAIE 572



 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 78/244 (31%), Gaps = 38/244 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R I+ +   +++ A GS + + G+T +L+  T+    +E+   +             G +
Sbjct: 23  RVITFSTGRLARQAAGSVVAQLGETVVLSATTVGRQPKEQFDFFPLTVDVEERMYAAGRI 82

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+  +RE   GR    +    R+I R LR           Q++     +       
Sbjct: 83  P---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETVLALDPSHPYD 136

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI  A ++                      G + A     + G  +    + E     
Sbjct: 137 VVAINAASMS-------------TKLSGLPFSGPIGATRMAHIDGSWVAFPTHEELERAT 183

Query: 187 VDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
            D              I+ V+  A   T           +++   + L  AK  I +L +
Sbjct: 184 FDMVVAGRALPDGDVAIMMVEAEATEHTVKLVAGGASAPTEEVVASGLEAAKPAIRELCR 243

Query: 233 LQKD 236
            Q +
Sbjct: 244 AQSE 247


>gi|291523665|emb|CBK81958.1| polyribonucleotide nucleotidyltransferase [Coprococcus catus GD/7]
          Length = 697

 Score = 95.5 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 74/231 (32%), Gaps = 31/231 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R ++    +     GS +   G T  + T T    +    +         
Sbjct: 315 RPDGRAIDQIRPLAAEIDLFARTHGSAMFTRGQTQ-ICTITTLAPLSDAQKVDGLNEFVT 373

Query: 62  E------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G          R+ G       +  RAL  V+         I   
Sbjct: 374 SKRYMHHYNFPSYSVGETKPSRGPGRREIGHG----ALAERALVPVLPSEEEFPYAIRTV 429

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            +  +++G T  A+I  + ++L                   +K  VA ISCG++ G    
Sbjct: 430 SETFESNGSTSQASICASTMSLMAAGV-------------PIKKPVAGISCGLVTGDTDD 476

Query: 173 ---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
               + D+   ED   D+D     T  G I  +Q   +    ++      +
Sbjct: 477 DYLVLTDIQGLEDFFGDMDFKVAGTHDG-ITAIQMDIKIHGLTRPIVEEAI 526



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 81/234 (34%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    V+  A G+ L+ +GDT +L+TAT      + +  +  + +        G +
Sbjct: 15  RTLRVEVGHVAAQANGAALMYYGDTCVLSTATASEKPRDGIDFFPLSVEFEEKMYSVGKI 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +       
Sbjct: 75  P---GGFNKRE---GKASENAVLTARVIDRPMRPLFPKDYRNDVTLNNLVLCVDQTCSPE 128

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  A    GM+ G  I++    + S  D
Sbjct: 129 LTAMLGSAIA-------------TCISDIPFDGPCAMTQVGMINGEFIINPSNEQKSVSD 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    ++ ++  A      +D     +  A D   ++IK    +++ 
Sbjct: 176 LALTVASTRE-KVIMIEAGANEVP--EDKMIEAIYAAHDVNQEIIKFIDQIVAE 226


>gi|157825781|ref|YP_001493501.1| polynucleotide phosphorylase/polyadenylase [Rickettsia akari str.
           Hartford]
 gi|187611278|sp|A8GNL8|PNP_RICAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|157799739|gb|ABV74993.1| polynucleotide phosphorylase/polyadenylase [Rickettsia akari str.
           Hartford]
          Length = 747

 Score = 95.5 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 90/248 (36%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R+I+    +   A GS L   G+T  L + T    +   + ++  G    
Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQLVDSLDGEYKE 375

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
               +Y   P S    +  +A S R+ G      ++  RA+  ++         I +  +
Sbjct: 376 RFMLDYIFPPYSVNEAMPMKAPSRREVGHG----KLAWRAINPILPNKVQFPYAIRVVAE 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
             +++G +  A +  + +AL                   +K  VA I+ G++        
Sbjct: 432 TTESNGSSSMATVCSSSLALMYAGV-------------PIKAPVAGIAMGLVKEGKKFAV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   + +        A L  A+     ++  
Sbjct: 479 LSDILGDEDYFGDMDFKVAGTSEG-ITALQMDIKISGVDFKIMKAALEQARLGRLHILDQ 537

Query: 234 QKDVISNE 241
              +IS  
Sbjct: 538 MNKIISKP 545



 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 89/229 (38%), Gaps = 33/229 (14%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           +++ A+G+  VK G++ LL  A +    +E +  +     +  +    G +P   G   K
Sbjct: 23  IARQADGAVTVKMGNSVLLCAAVVANKAKEGIGFFPLTINYREMAYAAGKIP---GGFFK 79

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--RTAAITGA 133
           RE   G+   R   + R+I R +R +   + +      + C V+  D  T     AI GA
Sbjct: 80  RE---GKASDREVLVSRLIDRPIRPLFHPAFVNET--HVTCTVLSYDPETPVDILAIIGA 134

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
             AL                       VAA   G++ G  +++       T  +D     
Sbjct: 135 SAALS-------------LSPAPYLEIVAASKVGLIDGEFVLNPTLELLKTSQLDLVVAG 181

Query: 194 T-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           T DS  +VE    +E    S++     +    +    +IK+ K+ ++ E
Sbjct: 182 TADSVMMVE----SEANLLSEEQMLEAVKFGFESFQPIIKIIKE-LAKE 225


>gi|225388763|ref|ZP_03758487.1| hypothetical protein CLOSTASPAR_02499 [Clostridium asparagiforme
           DSM 15981]
 gi|225045170|gb|EEG55416.1| hypothetical protein CLOSTASPAR_02499 [Clostridium asparagiforme
           DSM 15981]
          Length = 702

 Score = 95.5 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 85/252 (33%), Gaps = 30/252 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWIT 60
           R  GR   ++R ++    +     GS +   G T +L   TL        +        +
Sbjct: 312 RPDGRAVTEIRRLAAEVDLLPRVHGSGMFTRGQTQILNACTLAPLSEAQRLDGLDENETS 371

Query: 61  AE----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         I    
Sbjct: 372 KRYMHHYNFPSFSVGETKPSRGPGRREIGHG----ALAERALVPVLPSEEEFPYAIRTVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + ++++G T  A+I  + ++L                   +K  VA ISCG++ G     
Sbjct: 428 ETMESNGSTSQASICASTLSLMAAGV-------------PIKDMVAGISCGLVTGETDDD 474

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-IAD 229
              + D+   ED   D+D     T  G I  +Q   +    ++      ++  ++  I  
Sbjct: 475 YLVLTDIQGLEDFFGDMDFKVAGTKKG-ITAIQMDIKIHGLTRPIIEEAISRTREARIHI 533

Query: 230 LIKLQKDVISNE 241
           L  + + VIS  
Sbjct: 534 LDDVMRPVISEP 545



 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 77/226 (34%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R++++    V+  A G+  + +GDT +L+TAT      E +  +  + +        G +
Sbjct: 12  RKLTVEVGRVAAQANGAVFMHYGDTVVLSTATASTKPREGIDFFPLSVEFEEKLYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  +    
Sbjct: 72  P---GGFNKRE---GKASENAVLTARVIDRPMRPLFPKDYRNDVTLDNIVMSVDPNCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  A    GM+ G  I++    +    D
Sbjct: 126 LTAMLGSAIA-------------TSISDIPFAGPCATTQVGMIDGEFIINPTADQKHVSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +D     +  A     ++I 
Sbjct: 173 LALTVASTRE-KVIMIEAGANEVP--EDKMIEAIFKADQVNKEIIA 215


>gi|167758075|ref|ZP_02430202.1| hypothetical protein CLOSCI_00413 [Clostridium scindens ATCC 35704]
 gi|167663972|gb|EDS08102.1| hypothetical protein CLOSCI_00413 [Clostridium scindens ATCC 35704]
          Length = 695

 Score = 95.5 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 77/234 (32%), Gaps = 25/234 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
           R  GR  +Q+R ++    +     GS +   G T  + T T          +        
Sbjct: 312 RPDGRAIDQIRPLAAEIDLIPRVHGSAMFTRGQTQ-ICTITTLAPLAEAQRLDGLDEAET 370

Query: 60  TAEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  Y M   +  +    E    R  G R      +  RAL  V+   A     I    + 
Sbjct: 371 SKRY-MHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPNEAEFPYAIRTVSET 429

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY------ 172
            +++G T  A+I  + ++L                   +K  VA IS G++ G       
Sbjct: 430 FESNGSTSQASICASSMSLMAAGV-------------PIKAAVAGISAGLVTGDSDDDYL 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED   D+D     T  G I  +Q   +    ++      +   K  
Sbjct: 477 VLTDIQGLEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAIAATKKA 529



 Score = 78.2 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    V+K A G+ L+ +GDT +L TAT      E +  +  + ++       G +
Sbjct: 12  RTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASEKPREGIDFFPLSVEYNERLYSVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 72  P---GGFNKRE---GKASENAILTCRVIDRPMRPLFPKDYRNDVTLENLVLSVDQDCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA +A                      G ++    G++    + +    +    D
Sbjct: 126 LTAMLGAAIA-------------TTISDIPFDGPISTTQVGIVDDEFVFNPTAAQKEASD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +      +  A +    +I 
Sbjct: 173 LALTVASTKE-KVIMIEAGANEVP--EQKMIDAIFAAHELNQKVIA 215


>gi|294786716|ref|ZP_06751970.1| polyribonucleotide nucleotidyltransferase [Parascardovia
           denticolens F0305]
 gi|294485549|gb|EFG33183.1| polyribonucleotide nucleotidyltransferase [Parascardovia
           denticolens F0305]
          Length = 922

 Score = 95.5 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 89/249 (35%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR  + +R +S    V     GS L + G+T +L   TL     E+    +      
Sbjct: 346 RIDGRGLSDIRTLSAEVDVVPRVHGSALFQRGETQILGVTTLNMLKMEQTTDALSGPDTK 405

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P STG   +  +   R+ G       +  RAL  V+         I    +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHG----ALAERALIPVLPSREEFPYAIRQVSE 461

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            I ++G T   ++  + ++L D                 LK  VA I+ G++ G      
Sbjct: 462 AIGSNGSTSMGSVCASTMSLLDAGV-------------PLKAPVAGIAMGLVSGEVDGQM 508

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    I  +Q   +      D     L  A +    
Sbjct: 509 VYKTLTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAGALQQAYEARTT 567

Query: 230 LIKLQKDVI 238
           ++++  + I
Sbjct: 568 ILEVIDECI 576



 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 73/247 (29%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   D+ +L      ++ +E    +             G
Sbjct: 21  RVLRFETGRLAQQADGAVAAYLDN-DSMVLSTTTAGSSPKENFDFFPLTVDVEEKMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     I  D  
Sbjct: 80  KIP---GSFFRRE---GRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETILSINPDDS 133

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  +                     +G V+ +   ++    +    + E   
Sbjct: 134 YDMIAMNAASAS-------------TMISGLPFEGPVSGVRLALIDDQWVAFPSWSERER 180

Query: 185 IDVDANFVM----TDSGHIVEVQGSAERATF---------SQDHFFAM--LNLAKDRIAD 229
              +              I  ++  A +  +           D       L  AK  I  
Sbjct: 181 AVFELVVAGRVLDNGDVAIAMIEAGAGKNAWKLIYDEGMTKPDEVVVAGGLEAAKPFIKV 240

Query: 230 LIKLQKD 236
           + + Q +
Sbjct: 241 ICQAQNE 247


>gi|145593929|ref|YP_001158226.1| polynucleotide phosphorylase/polyadenylase [Salinispora tropica
           CNB-440]
 gi|187611287|sp|A4X4P8|PNP_SALTO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145303266|gb|ABP53848.1| Polyribonucleotide nucleotidyltransferase [Salinispora tropica
           CNB-440]
          Length = 785

 Score = 95.5 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 87/251 (34%), Gaps = 30/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R ++    V     GS L + G+T ++   TL     E+    +   K 
Sbjct: 340 VRIDGRGPRDIRPLTAEVGVLPRVHGSALFERGETQIMGVTTLNMLRMEQSLDTLSPEKS 399

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 400 KRYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALIPVLPSREEFPYAIRQVS 455

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
           + + ++G T   ++  + + L                   LK  VA I+ G++       
Sbjct: 456 EALGSNGSTSMGSVCASTLGLLSAGV-------------PLKAPVAGIAMGLISDEVEGK 502

Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T    +  +Q   +      D   A L  A +   
Sbjct: 503 TRYVTLTDILGAEDAFGDMDFKVAGTQEF-VTALQLDTKLDGIPSDVLAAALQQAYEARQ 561

Query: 229 DLIKLQKDVIS 239
            ++++ +  I 
Sbjct: 562 TILEVMQAAIE 572



 Score = 69.0 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 79/244 (32%), Gaps = 38/244 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R I+ +   +++ A GS + + G+T +L+  T+    +E    +             G +
Sbjct: 23  RVITFSTGRLARQAAGSVVAQLGETVVLSATTVGRQPKEHFDFFPLTVDVEERMYAAGRI 82

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+  +RE   GR    +    R+I R LR           Q++     +       
Sbjct: 83  P---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETVLALDPSHPYD 136

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI  A ++                      G + A     + G  +    + E     
Sbjct: 137 VVAINAASMS-------------TKLSGLPFSGPIGATRMAHIDGSWVAFPTHEELVRAT 183

Query: 187 VDANFVMT--DSGHI----VEVQGSAERATF--------SQDHFFAMLNLAKDRIADLIK 232
            D          G +    VE + +A  A          +++   + L  AK  I +L +
Sbjct: 184 FDMVVAGRALPDGDVAIMMVEAEATAHTAKLVADGASAPTEEVVASGLEAAKPAIRELCR 243

Query: 233 LQKD 236
            Q +
Sbjct: 244 AQSE 247


>gi|260782066|ref|XP_002586113.1| hypothetical protein BRAFLDRAFT_109996 [Branchiostoma floridae]
 gi|229271204|gb|EEN42124.1| hypothetical protein BRAFLDRAFT_109996 [Branchiostoma floridae]
          Length = 153

 Score = 95.5 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 5/110 (4%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78
            V   A GS  ++ G T ++       ++      T  G +  E      +   R +   
Sbjct: 15  GVVSQATGSAYIEMGQTKVIAAVYGPREIARREEFTMKGRLCCELKFATFACRRRRQHIQ 74

Query: 79  VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
            +  + G       ++ +AL   V L      Q+ +   V+Q DG    A
Sbjct: 75  DNQEKDG-----ALIVLQALEPAVCLDRFPKSQVDVYITVLQDDGSGHCA 119


>gi|37522718|ref|NP_926095.1| polynucleotide phosphorylase/polyadenylase [Gloeobacter violaceus
           PCC 7421]
 gi|81709200|sp|Q7NGM0|PNP_GLOVI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|35213720|dbj|BAC91090.1| polyribonucleotide nucleotidyltransferase [Gloeobacter violaceus
           PCC 7421]
          Length = 713

 Score = 95.5 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 91/234 (38%), Gaps = 27/234 (11%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           REI L+  V    A GS LV+ G+T +L TAT      E +  +     +       G +
Sbjct: 13  REIGLSTGVLAQLAGGSVLVQSGETAVLVTATMASKPREGIDFFPLLVDYEERLYAAGRI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+ V+RE   GR   ++    R+I R LR +     +   QI+     +  +    
Sbjct: 73  P---GSFVRRE---GRPPEKAILAARLIDRPLRPLFPKGFINDVQIVATVLALDMNVPPD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI GA  A                      G VAA   G++    I++  Y E    +
Sbjct: 127 ILAILGASTATMLAGI-------------PFDGPVAATRVGLMGDDFIINPTYKEIEEGE 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +D     T +G I+ V+  A      ++     ++   + +  ++  Q++ I +
Sbjct: 174 LDLVVAGTKNG-IMMVEAGA--NCLPEEDIIDAIDYGYEAVQAMLTAQEEFIRD 224



 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 83/248 (33%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  +++R IS   RV     G  L   G T +L+  TL           +      
Sbjct: 324 RVDGRSLDEVRPISSAVRVIPRVHGCGLFTRGTTQVLSVVTLGTASDAQELDDLHPDDSK 383

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G       V  R+ G       +  RA+  ++         I +  +
Sbjct: 384 RYMHHYNFPGFSVGEVKPLRGVGRREVGHG----ALAERAIVPILPEHEQFPYVIRVVSE 439

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           V+ ++G T   ++  + +AL D                 ++  V+ ++ G++        
Sbjct: 440 VLSSNGSTSMGSVCASTLALMDAGV-------------PIREPVSGVAMGLIKEGDEVRI 486

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +    +     A +  +K     +++ 
Sbjct: 487 LTDIQGIEDFLGDMDFKVAGTRDG-ITALQMDIKIQGITLQILEAAIQQSKAGRLHILEK 545

Query: 234 QKDVISNE 241
               I   
Sbjct: 546 MLIAIDKP 553


>gi|149200561|ref|ZP_01877570.1| polynucleotide phosphorylase/polyadenylase [Lentisphaera araneosa
           HTCC2155]
 gi|149136358|gb|EDM24802.1| polynucleotide phosphorylase/polyadenylase [Lentisphaera araneosa
           HTCC2155]
          Length = 696

 Score = 95.5 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 78/227 (34%), Gaps = 28/227 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R  GR    +R +S    +     GS L   G+T  L T TL +         IR     
Sbjct: 315 RADGRGAEDLRPLSAENSLMPRTHGSALFARGETQALVTVTLGDAKAAQSAETIRGRYDK 374

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G   +      R+ G       +  RAL     + A     + +  +
Sbjct: 375 TFYLHYNFPNFSVGECGRIMGAGNREIGHG----NLAERAL--AKMMPADYPYTVRVISE 428

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           V+ ++G T  A+I G  +AL D                 LK  VA IS G++        
Sbjct: 429 VMGSNGSTSMASICGGSLALMDAGV-------------PLKKAVAGISVGLVQEADKYVM 475

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           I D+   ED   D+D     T  G I   Q   + A  S D  +  +
Sbjct: 476 ITDILGSEDHYGDMDFKVAGTRDG-ITAFQLDLKIAGVSLDMMYEAM 521



 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 73/231 (31%), Gaps = 30/231 (12%)

Query: 12  REISLTRRVSKY-AEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           R I++        A  +  V  G+T +L TA        +  +     +     +Y    
Sbjct: 15  RPITIETGKMALLANAAVTVTQGETVVLVTACSSAPRAGIDFFPLMVAYRE---KYSAAG 71

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGT 125
           +  G  +KRE    R         RM  R LR +         QI     V+  D     
Sbjct: 72  KFLGGFMKRE---NRPSEHEILTSRMTDRPLRPLFPKGFYHEVQIQAI--VLSYDKVNDP 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
            T A+ G+  AL                    +G + A+  G + G  + +    E    
Sbjct: 127 DTLAMLGSSAAL-------------MLSDLPFQGPLGALRVGQVDGEFVANPT-TEQMEA 172

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                      G  + ++G  +    S++  F  L  A  ++  + K Q +
Sbjct: 173 SALELIYSGTPGKTIMIEGDCDE--LSEERLFEALKYADSKVEVMAKAQLE 221


>gi|298490374|ref|YP_003720551.1| polyribonucleotide nucleotidyltransferase ['Nostoc azollae' 0708]
 gi|298232292|gb|ADI63428.1| polyribonucleotide nucleotidyltransferase ['Nostoc azollae' 0708]
          Length = 718

 Score = 95.5 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 90/247 (36%), Gaps = 20/247 (8%)

Query: 1   MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---- 55
           +R+ GR+ +Q+R +S    V  K   GS L   G T +L+  TL         N      
Sbjct: 322 VRVDGRKLDQVRPVSCQVNVLPKRVHGSGLFNRGLTQVLSCCTLGTPGDAQNLNDDLQVD 381

Query: 56  -HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
            H      Y   P S G      A   R+ G       +  RA+  V+         I +
Sbjct: 382 QHKRYLHHYNFPPFSVGETKPMRAPGRREIGHG----ALAERAILPVLPPKEQFPYVIRV 437

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             +V+ ++G T   ++ G+ +AL D    +    +   +  + +G              +
Sbjct: 438 VSEVLSSNGSTSMGSVCGSTLALMDAGVPILKPVSGAAMGLIKEGDEV---------RVL 488

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED   D+D     TDSG I  +Q   + +  S +     ++ AK    +++   
Sbjct: 489 TDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKISGLSLEVIAQAVHQAKAARLNILDKM 547

Query: 235 KDVISNE 241
              I   
Sbjct: 548 LQTIETP 554



 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 26/233 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           R+I L   +    A GS L++ GDT +L TAT     E +        +       G +P
Sbjct: 13  RDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRSQAREGIDFLPLTVDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   GR   R+    R+I R LR +         Q+I     +        
Sbjct: 73  ---GGIMRRE---GRPPERAILTSRLIDRPLRPLFPSWLRDDLQVIAFTLSMDEQVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA +A                      G +AA+  G++    I++  Y E    D+
Sbjct: 127 LAVTGASIATLIAQI-------------PFNGPMAAVRVGLVGDDFIINPTYAEIDAGDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     +  G ++ V+  A +    +      ++   + + DLI+ Q D++  
Sbjct: 174 DLIVAGSPDG-VIMVEAGANQ--LPERDIIEAIDFGYEAVRDLIQAQLDLVEE 223


>gi|300813727|ref|ZP_07094047.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512184|gb|EFK39364.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 722

 Score = 95.5 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 92/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTATL---EEKVPMWIRNTKHG 57
           R  GR+  ++R +S    +   A GS L   G T +L  TA     EE+    + + K  
Sbjct: 312 RPDGRKLEEIRHLSSEVGLLPRAHGSGLFTRGQTQVLSVTALGALSEEQTIDGLGDDKPK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G+     +   R+ G       +  RAL  V+         I +  +
Sbjct: 372 HYIHHYNFPGFSVGDTKPSRSPGRREIGHG----ALAERALIPVIPSIEEFPYTIRVVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           V+ ++G +  A++ G+ ++L D                 +K  VA I+ G++  +     
Sbjct: 428 VLSSNGSSSQASVCGSTLSLMDAGV-------------PIKAPVAGIAMGLIEEHGVTKI 474

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +     ++     L  AK    +++  
Sbjct: 475 LTDIQGLEDHFGDMDFKVAGTSEG-ITAIQMDIKVEGIKKEILEVALERAKVARLEILDH 533

Query: 234 QKDVISNE 241
            K  I   
Sbjct: 534 LKTTIDKP 541



 Score = 92.5 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 88/223 (39%), Gaps = 27/223 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
           E+ +T   V++ A G CLV++GDT +L TAT      E +  +  +  +       G +P
Sbjct: 13  ELKVTVGKVAEQANGECLVQYGDTVVLVTATSSKEPREGIDFFPLSVDYEEKMYAVGKIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R LR +         QI+     +  D     
Sbjct: 73  ---GGFIKRE---GRPSEKATLTARLIDRPLRPLFPEGYRNDVQIVATVLSVDQDHIPDI 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ G+ +AL                     G   ++  G++ G  +++ +  ++     
Sbjct: 127 PAMIGSSIALC-------------LSDIPFDGPTGSVQVGLVDGEYVINPN--QEQREKT 171

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           D N +++ +   + +  +      S++     +    + I ++
Sbjct: 172 DINLMLSGTSSAIMMVEAG-ANIVSEEQMLNAILTGHEAIKEI 213


>gi|300727487|ref|ZP_07060878.1| polyribonucleotide nucleotidyltransferase [Prevotella bryantii B14]
 gi|299775190|gb|EFI71791.1| polyribonucleotide nucleotidyltransferase [Prevotella bryantii B14]
          Length = 739

 Score = 95.5 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 28/242 (11%)

Query: 3   LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       I++    V+K A+GS +++ G+T LL T    +E VP            
Sbjct: 2   PDGRT------ITIETGKVAKQADGSAVLRLGNTVLLATVCAAKEAVPGTDFMPLQVDYR 55

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y    R  G   KRE   G+         R++ RALR +          + +   ++ 
Sbjct: 56  EQYSAAGRFPGGFTKRE---GKASDEEVLTSRLVDRALRPLFPSDYHCE--VYVQVMLLS 110

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           V   D L      +            ++ +    + G  +++  + 
Sbjct: 111 ADG-----------VDQPDALAGFAASAAMACSDIPFDYTISEVRVARINGEFVINPTFQ 159

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +    D+D     T   +I+ V+G  E    S+      L  A + I  +  LQ + ++ 
Sbjct: 160 QMEEADMDLMVGATKD-NIMMVEG--EMKEVSELDLINALKAAHEAIKPMCDLQDE-LAK 215

Query: 241 EV 242
           E+
Sbjct: 216 EL 217



 Score = 94.8 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 86/251 (34%), Gaps = 30/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKH 56
           +RL GR    +R I           GS + + G+T  L+T TL  K+   +     N  +
Sbjct: 314 LRLDGRATTDIRPIWCEVSPLPMPHGSAIFQRGETMSLSTCTLGTKMDEKLVDGVLNRSY 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG    +  V  R+ G       +  RAL+  +         + +  
Sbjct: 374 QRFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKDQIPAD--YPYTVRLVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171
            V++++G +  A      +AL D                 +K  V+ I+ G++       
Sbjct: 428 QVLESNGSSSMATTCAGTLALMDAGV-------------PIKKPVSGIAMGLIKNPGEDK 474

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G +   Q   +    S +     L  AK     +
Sbjct: 475 YAILSDILGDEDHLGDMDFKTTGTRDG-LTATQMDIKCDGLSFEILEKALMQAKAGREHI 533

Query: 231 IKLQKDVISNE 241
           +      IS  
Sbjct: 534 LNEMMKTISEP 544


>gi|282882000|ref|ZP_06290641.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus lacrimalis
           315-B]
 gi|281298030|gb|EFA90485.1| polyribonucleotide nucleotidyltransferase [Peptoniphilus lacrimalis
           315-B]
          Length = 722

 Score = 95.2 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 92/248 (37%), Gaps = 26/248 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTATL---EEKVPMWIRNTKHG 57
           R  GR+  ++R +S    +   A GS L   G T +L  TA     EE+    + + K  
Sbjct: 312 RPDGRKLEEIRHLSSEVGLLPRAHGSGLFTRGQTQVLSVTALGALSEEQTIDGLGDDKPK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G+     +   R+ G       +  RAL  V+         I +  +
Sbjct: 372 HYIHHYNFPGFSVGDTKPSRSPGRREIGHG----ALAERALIPVIPSIEEFPYTIRVVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           V+ ++G +  A++ G+ ++L D                 +K  VA I+ G++  +     
Sbjct: 428 VLSSNGSSSQASVCGSTLSLMDAGV-------------PIKAPVAGIAMGLIEEHGVTKI 474

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G I  +Q   +     ++     L  AK    +++  
Sbjct: 475 LTDIQGLEDHFGDMDFKVAGTREG-ITAIQMDIKVEGIKKEILEVALERAKVARLEILDH 533

Query: 234 QKDVISNE 241
            K  I   
Sbjct: 534 LKTTIDKP 541



 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 88/223 (39%), Gaps = 27/223 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
           E+ +T   V++ A G CLV++GDT +L TAT      E +  +  +  +       G +P
Sbjct: 13  ELKVTVGKVAEQANGECLVQYGDTVVLVTATSSKEPREGIDFFPLSVDYEEKMYAVGKIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R LR +         QI+     +  D     
Sbjct: 73  ---GGFIKRE---GRPSEKATLTARLIDRPLRPLFPEGYRNDVQIVATVLSVDQDHIPDI 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ G+ +AL                     G   ++  G++ G  +++ +  ++     
Sbjct: 127 PAMIGSSIALC-------------LSDIPFDGPTGSVQVGLVDGEYVINPN--QEQREKT 171

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           D N +++ +   + +  +      S++     +    + I ++
Sbjct: 172 DINLMLSGTSSAIMMVEAG-ANIVSEEQMLNAILTGHEAIKEI 213


>gi|322374786|ref|ZP_08049300.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. C300]
 gi|321280286|gb|EFX57325.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. C300]
          Length = 737

 Score = 95.2 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 85/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + ++ I
Sbjct: 539 VIEETI 544



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAERSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|219130014|ref|XP_002185170.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403349|gb|EEC43302.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 140

 Score = 95.2 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPMWIRNTKHGWI 59
           R  GR  + +R +S        A+GS L K G T +L         + P          I
Sbjct: 3   RADGRLASTLRPLSCELGTLHNADGSALWKSGSTQVLAAVHGPVAPRQPQHETQKAKISI 62

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             + G    +T  R               E +  I +AL + +         I I   ++
Sbjct: 63  IIKSG-TTVNTLER---------------EWEAFITKALTACLVTEQYPRSVIQIVLQIL 106

Query: 120 QADGGTRTAAITGAWVALHDCLQHME 145
            ADG    AA+ GA  AL D    M+
Sbjct: 107 SADGSVLGAALNGAVAALMDAGIAMK 132


>gi|197294708|ref|YP_001799249.1| polynucleotide phosphorylase/polyadenylase [Candidatus Phytoplasma
           australiense]
 gi|226702674|sp|B1VAN5|PNP_PHYAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|171854035|emb|CAM12008.1| Polyribonucleotide nucleotidyltransferase [Candidatus Phytoplasma
           australiense]
          Length = 710

 Score = 95.2 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 84/245 (34%), Gaps = 18/245 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R   R   ++R +     +     GS L   G T  L   TL    E K+   +    + 
Sbjct: 328 RPDKRTLEEVRNLDSQIDLLPRPHGSALFTRGQTQSLAVVTLGTLSESKIIDDLSGESNK 387

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P + G+  +  A S R+ G       +  +A+  ++         I +  +
Sbjct: 388 RFMLHYNFPPFAVGSIGRYAAPSRREIGHG----NLAEKAILPLLPEENDFPYAIRVVSE 443

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-D 176
           +++++G +  A +    ++L      ++   +   +   +              Y I+ D
Sbjct: 444 ILESNGSSSQATVCATSMSLMAAGVPLKRAVSGIAMGLFMD--------SKTNEYVILSD 495

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED   D+D     +D G I  +Q   +    SQ         AK     +++    
Sbjct: 496 IQGLEDHIGDMDLKIAGSDKG-ITALQMDLKIEGISQAILKQAFFQAKKGRLHILEHMNK 554

Query: 237 VISNE 241
            I++ 
Sbjct: 555 TIASP 559



 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 75/218 (34%), Gaps = 19/218 (8%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
            ++  + S L++F DT +LTT     K   +           ++    +  G+ ++RE  
Sbjct: 22  YARNVDPSVLIRFQDTVVLTTTVFSNKKNNFDFLPLTVIYQEKFYAAGKIPGSFLRRE-- 79

Query: 80  SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD 139
            GR         R+I R+LR +         Q+I        D  +  A           
Sbjct: 80  -GRSTDHEILSSRLIDRSLRPLFPKEFRQEIQVINTVLSSNPDFKSEIA----------- 127

Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHI 199
               +    +           VA +    +    +++ +  + +   +      T   ++
Sbjct: 128 --SILGSSLSLLISEIPFFEPVAGVYVAYIQNQFVINPNAQQLTNSPLHLLVAGTKK-NV 184

Query: 200 VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           V ++  A  +  S++ F   +  A + I  L   Q+DV
Sbjct: 185 VMIE--AHASEVSEEMFLEAIVFAHEYIKKLCLFQEDV 220


>gi|291458661|ref|ZP_06598051.1| polyribonucleotide nucleotidyltransferase [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291419194|gb|EFE92913.1| polyribonucleotide nucleotidyltransferase [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 701

 Score = 95.2 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 86/252 (34%), Gaps = 30/252 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHL-----LTTATLEEKVPMWIRNTKH 56
           R  GR+ +++R +     +     GS + K G T +     L   +  +KV         
Sbjct: 312 RPDGRRIDEIRPLEAEVDLIPRVHGSAMFKRGQTQILNITTLAPLSEVQKVEGLNEYETE 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y     S G        S   G R      +  RAL  V+         I    
Sbjct: 372 KRYLHQYNFPGYSVGEAR----ASRGPGRREIGHGALAERALLPVLPSVEDFPYAIRSVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + ++++G T  A+   + ++L                   ++  VA ISCG++ G     
Sbjct: 428 ETMESNGSTSMASTCASCMSLMAAGV-------------PIRKMVAGISCGLVTGESDED 474

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G I  +Q   +    ++D     +  A +    +
Sbjct: 475 YLVLTDIQGLEDFFGDMDFKVTGTREG-ITAIQMDIKIHGLTRDIVEEAIRRAHEARLFI 533

Query: 231 IK-LQKDVISNE 241
           +  + K  IS  
Sbjct: 534 MDGVMKSAISEP 545



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 77/225 (34%), Gaps = 27/225 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTAT--LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V   A G+ L+ +G+T +L   TA+    + +  +  + ++       G  
Sbjct: 12  RTLTVDIGRVCAQANGAALMHYGETTVLSSCTASEKPRDGIDFFPLSVEYEEKMYAVGKF 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KREA   R    +    R+I R +R +          +      +  D    
Sbjct: 72  P---GGFKKREA---RPADSAILTDRVIDRPMRPLFPKDYRNDVLLDNLVLSVDQDCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  A+   GM+ G  I++    E +  D
Sbjct: 126 LLAMLGSSLAAC-------------ISDVPFDGPCASTQVGMINGEFIMNPGNAEKTASD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           +      T    ++ ++  A     S +     + LA      +I
Sbjct: 173 LLLTVASTRD-KVIMIEAGANE--ISDEKMIEAIYLAHGLNQQII 214


>gi|153855229|ref|ZP_01996395.1| hypothetical protein DORLON_02409 [Dorea longicatena DSM 13814]
 gi|149752228|gb|EDM62159.1| hypothetical protein DORLON_02409 [Dorea longicatena DSM 13814]
          Length = 695

 Score = 95.2 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 81/229 (35%), Gaps = 27/229 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHL--LTT-ATLEEKVPMWIRNTKHGW 58
           R  GR+ +Q+R ++    +     GS +   G T +  + T A L E     +       
Sbjct: 312 RPDGREIDQIRPLAAEVDLIPRVHGSAMFTRGQTQICNICTLAPLSEAQK--LDGLDEAE 369

Query: 59  ITAEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            T  Y M   +  +    E    R  G R      +  RAL  V+   A     I    +
Sbjct: 370 TTKRY-MHHYNFPSYSVGETKPSRGPGRREIGHGALAERALLPVLPSEAEFPYAIRTVSE 428

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
             +++G T  A++  + ++L                   +K  VA ISCG++ G      
Sbjct: 429 TFESNGSTSQASVCASSMSLMSAGV-------------PIKAAVAGISCGLVTGDTDDDY 475

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
             + D+   ED   D+D     T  G I  +Q   +    ++      +
Sbjct: 476 LVLTDIQGLEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAI 523



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 77/226 (34%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    V+K A G+ L+ +GDT +L TAT      + +  +  + ++       G +
Sbjct: 12  RPLKVDVGRVAKQANGAVLMHYGDTTVLCTATASEKPRDGIDFFPLSVEYNERMYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 72  P---GGFNKRE---GKASENAILTCRVIDRPMRPLFPKDYRNDVTLENLVLSVDQDCAPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA +A                      G ++    G++ G  + +    + +  D
Sbjct: 126 LTAMLGAAIA-------------TTISDIPFDGPISTTQVGLVDGEFVFNPTAAQRAVSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +      +  A +    +I 
Sbjct: 173 MALTVASTRE-KVIMIEAGANEVP--EQQMIDAIFAAHELNQKVIA 215


>gi|281422610|ref|ZP_06253609.1| polyribonucleotide nucleotidyltransferase [Prevotella copri DSM
           18205]
 gi|281403280|gb|EFB33960.1| polyribonucleotide nucleotidyltransferase [Prevotella copri DSM
           18205]
          Length = 772

 Score = 95.2 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 88/251 (35%), Gaps = 30/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKH 56
           +RL GR    +R I           GS + + G+T  L+T TL    +EK+   +    +
Sbjct: 323 LRLDGRATTDIRPIWCEVSPLPMPHGSAIFQRGETMSLSTCTLGTKMDEKLIDGVLEKSY 382

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG    +  V  R+ G       +  R L+  +         + +  
Sbjct: 383 QRFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRGLKGQIPTDF--PYTVRLVS 436

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171
            +++++G +  A +    +AL D    M             K  V+ I+ G++       
Sbjct: 437 QILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVSGIAMGLIKNPGEDK 483

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G +   Q   +    S +     L  AK     +
Sbjct: 484 YAILSDILGDEDHLGDMDFKTTGTRDG-LTATQMDIKCDGLSFEILEEALMQAKAGREHI 542

Query: 231 IKLQKDVISNE 241
           +    + IS  
Sbjct: 543 LNCMMETISEP 553



 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 93/241 (38%), Gaps = 28/241 (11%)

Query: 3   LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       I++    V+K A+G+ +++ G+T LL T    ++ VP            
Sbjct: 11  PDGRT------ITIETGKVAKQADGAAVLRMGNTVLLATVCAAKDAVPGTDFMPLQVDYR 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y    R  G   KRE   G+         R++ RALR +   +     ++ +   ++ 
Sbjct: 65  EQYSAAGRFPGGFTKRE---GKASDEEILTSRLVDRALRPLFPSN--YHAEVYVQVMLLS 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           V   D L      +         + +++ +    + G  +V+  + 
Sbjct: 120 ADG-----------VDQPDALAGFAASAAMACSDIPFEYYISEVRVARINGEYVVNPTFQ 168

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +    D+D     T   +I+ V+G  E    S+      L +A + I  + +LQ + ++ 
Sbjct: 169 QMEEADMDIMVGATKD-NIMMVEG--EMKEVSEQDLIGALKVAAEAIKPMCELQYE-LAK 224

Query: 241 E 241
           E
Sbjct: 225 E 225


>gi|227504840|ref|ZP_03934889.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           striatum ATCC 6940]
 gi|227198531|gb|EEI78579.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           striatum ATCC 6940]
          Length = 746

 Score = 95.2 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 95/255 (37%), Gaps = 34/255 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
            R+ GR    +R++ +   +   A GS L + G+T +L   T      +E+++      T
Sbjct: 361 FRIDGRGVTDIRDLGVEVDLIPRAHGSSLFERGETQIL-GVTTLDMLKMEQQIDSLTPVT 419

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              ++   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 420 GKRYMH-HYNFPPYSTGETGRVGSPKRREIGHG----ALAERALLPVIPSREDFPYAIRQ 474

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP- 173
             + + ++G T   ++  + ++L++                 LK  VA I+ G++ G   
Sbjct: 475 VSEALGSNGSTSMGSVCASTLSLYNAGV-------------PLKAPVAGIAMGLVSGEVD 521

Query: 174 -------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                  + D+   ED+  D+D     T   +I  +Q   +            L  A+D 
Sbjct: 522 GKEKFVALTDILGAEDAFGDMDFKVAGTSE-YITALQLDTKLDGIPSKVLAQALEQARDA 580

Query: 227 IADLIKLQKDVISNE 241
            A ++    +VI   
Sbjct: 581 RATILDTMAEVIEGP 595



 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 76/254 (29%), Gaps = 52/254 (20%)

Query: 12  REISLTRRVS-KYAEGSC---LVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEY 63
           R I     +  + A GS    L +  DT LL+T T      E    +             
Sbjct: 32  RTIRFETGLLARQAGGSVTTYLDE--DTMLLSTTTASNQPREGFDFFPLTVDVEERMYAA 89

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           G +P   G+  +RE   GR    +    R+I R LR           Q+++         
Sbjct: 90  GKIP---GSFFRRE---GRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVVTV------- 136

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------CGYPIVDL 177
                 ++ A    +D +      ++       + G V  +   ++       G  +   
Sbjct: 137 ------LSMAPEEYYDVIAINGASASTQLSGLPVSGAVGGVRMALIADDKHPKGQWVAFP 190

Query: 178 DYGEDSTIDVDANFVMT-------DSGHIVEVQGSA---------ERATFSQD-HFFAML 220
           ++ +      +             +   I+ V+  A         E A   Q+      L
Sbjct: 191 NHEQHERALFEMVVAGRIVKKGNKEDVAIMMVEAGAGTNVAERIKEGAPAPQESTVAEGL 250

Query: 221 NLAKDRIADLIKLQ 234
             AK  I  L + Q
Sbjct: 251 EAAKPFIKTLCEAQ 264


>gi|315226331|ref|ZP_07868119.1| polyribonucleotide nucleotidyltransferase [Parascardovia
           denticolens DSM 10105]
 gi|315120463|gb|EFT83595.1| polyribonucleotide nucleotidyltransferase [Parascardovia
           denticolens DSM 10105]
          Length = 966

 Score = 95.2 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 89/249 (35%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR  + +R +S    V     GS L + G+T +L   TL     E+    +      
Sbjct: 390 RIDGRGLSDIRTLSAEVDVVPRVHGSALFQRGETQILGVTTLNMLKMEQTTDALSGPDTK 449

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P STG   +  +   R+ G       +  RAL  V+         I    +
Sbjct: 450 RYMHNYEMPPYSTGETGRVGSPKRREIGHG----ALAERALIPVLPSREEFPYAIRQVSE 505

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            I ++G T   ++  + ++L D                 LK  VA I+ G++ G      
Sbjct: 506 AIGSNGSTSMGSVCASTMSLLDAGV-------------PLKAPVAGIAMGLVSGEVDGQM 552

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    I  +Q   +      D     L  A +    
Sbjct: 553 VYKTLTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAGALQQAYEARTT 611

Query: 230 LIKLQKDVI 238
           ++++  + I
Sbjct: 612 ILEVIDECI 620



 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 72/247 (29%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   D+ +L      ++ +E    +             G
Sbjct: 65  RVLRFETGRLAQQADGAVAAYLDN-DSMVLSTTTAGSSPKENFDFFPLTVDVEEKMYAAG 123

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     I  D  
Sbjct: 124 KIP---GSFFRRE---GRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETILSINPDDS 177

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  +                     +G V+ +   ++    +    + E   
Sbjct: 178 YDMIAMNAASAS-------------TMISGLPFEGPVSGVRLALIDDQWVAFPSWSERER 224

Query: 185 IDVDANFVM----TDSGHIVEVQGSA---------ERATFSQDHFFAM--LNLAKDRIAD 229
              +              I  ++  A         +      D       L  AK  I  
Sbjct: 225 AVFELVVAGRVLDNGDVAIAMIEAGAGKNAWKLIYDEGMTKPDEVVVAGGLEAAKPFIKV 284

Query: 230 LIKLQKD 236
           + + Q +
Sbjct: 285 ICQAQNE 291


>gi|266619741|ref|ZP_06112676.1| polyribonucleotide nucleotidyltransferase [Clostridium hathewayi
           DSM 13479]
 gi|288868702|gb|EFD01001.1| polyribonucleotide nucleotidyltransferase [Clostridium hathewayi
           DSM 13479]
          Length = 551

 Score = 95.2 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 83/253 (32%), Gaps = 32/253 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMWIRNTK---- 55
           R  GR  +Q+R ++    +     GS +   G T +L   T     +    +        
Sbjct: 312 RPDGRAIDQIRPLAAEIDMLPRVHGSAMFTRGQTQILNICTLAPLSESQR-LDGIDDMET 370

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G          R+ G       +  RAL  V+         I   
Sbjct: 371 SKRYMHHYNFPSFSVGETKPSRGPGRREIGHG----ALAERALIPVLPSEEEFPYAIRTV 426

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            + ++++G T  A+I  + ++L                   +K  VA ISCG++ G    
Sbjct: 427 SETMESNGSTSQASICSSSMSLMAAGV-------------PIKSAVAGISCGLVTGDTDD 473

Query: 173 ---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-IA 228
               + D+   ED   D+D     T  G I  +Q   +    ++      +   ++  I 
Sbjct: 474 DYIVLTDIQGLEDFFGDMDFKVGGTHKG-ITAIQMDIKIHGLTRPIIEEAIRRTREARIY 532

Query: 229 DLIKLQKDVISNE 241
            L ++    I+  
Sbjct: 533 ILDEVMAKAIAEP 545



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+K A G+ L+ +GDT +L+TAT      E +  +  + ++       G +
Sbjct: 12  RTLTVEVGRVAKQASGAALMHYGDTVVLSTATASDKPREGIDFFPLSVEYEEKLYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 72  P---GGFNKRE---GKASENAILTSRVIDRPMRPLFPKDYRNDVTLDNIVMSVDQDCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  A    GM+ G  +V+    +    D
Sbjct: 126 LTAMLGSAIA-------------TCISDIPFDGPCATTQIGMVDGELVVNPTQAQKQASD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +D     +  A     ++IK
Sbjct: 173 MALTVASTRE-KVIMIEAGANEVP--EDIMIEAIFKAHSVNQEVIK 215


>gi|225374866|ref|ZP_03752087.1| hypothetical protein ROSEINA2194_00489 [Roseburia inulinivorans DSM
           16841]
 gi|225213249|gb|EEG95603.1| hypothetical protein ROSEINA2194_00489 [Roseburia inulinivorans DSM
           16841]
          Length = 697

 Score = 95.2 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 89/252 (35%), Gaps = 32/252 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R ++    +     GS +   G T +    TL     +   +     IT 
Sbjct: 312 RPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEVQKIDGLDANITT 371

Query: 62  -----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y     S G       VS   G R      +  +AL +V+         I    
Sbjct: 372 KRYIHQYNFPAYSVGETK----VSRGPGRREIGHGALAEKALVAVLPSEEEFPYAIRAVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +  +++G T  A+   + +AL                   +K  VA ISCG++ G     
Sbjct: 428 ETFESNGSTSMASTCASCMALMAAGV-------------PIKSMVAGISCGLVTGDTDDD 474

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G I  +Q   +    ++      +  A+ R A L
Sbjct: 475 YIVLTDIQGLEDFFGDMDFKVTGTHKG-ITAIQMDIKIHGLTRPIVEEAI--ARTREARL 531

Query: 231 IKLQKDVISNEV 242
             +  +V+S  +
Sbjct: 532 Y-IMDEVMSKAI 542



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 78/234 (33%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V   A G+ L+K+G+T +L+T        + V  +  + +        G +
Sbjct: 12  RTLTVDIGRVCAQANGAALIKYGETTVLSTVVASDKPRDGVDFFPLSVEFEEKMYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  +    
Sbjct: 72  P---GGFNKRE---GKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMSVDPECRPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              + G+  AL   +                 G  A    GM+ G  IV+         D
Sbjct: 126 VVGMIGS--ALVTTMS-----------DIPFDGPCAMTQMGMVDGEFIVNPSQKVWDEGD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T +  ++ ++  A      ++     +    D    +I+    +++ 
Sbjct: 173 LQLTVASTRT-KVIMIEAGANEIP--EEKMIEAIYKCHDVNQTIIQFMDKIVAE 223


>gi|168031159|ref|XP_001768089.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680727|gb|EDQ67161.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 276

 Score = 95.2 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 82/261 (31%), Gaps = 33/261 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR     R + +     K  +GS  V+ G T +L     E   P   R    G +  
Sbjct: 25  RIDGRTPFDYRRLQIK--FLKE-DGSVEVQLGQTRVLAVVKGEITQPYPDRG-NEGSLAI 80

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSR--QII 113
                P             GR    + E+ R+I R LR    VD  +L    G     I 
Sbjct: 81  FTEFSPM-----GDPAFEPGRPSEMAVELGRIIDRGLRESRAVDTESLCILSGRSVWSIR 135

Query: 114 IDCDVIQADGGTRTAAITGAWVALH-----DCLQHMEDCSNKFQLSQVLKGHVA------ 162
           +D  ++   G    AA   A  AL      +C    +D          ++  V       
Sbjct: 136 VDIHILDNYGNLVDAANLAALAALLSYRRPECTVGGDDGQQIIVHPPEVREPVGLIIHHL 195

Query: 163 --AISCGMLCGYP--IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
             A++          ++D +  E+  +       +   G I  VQ        S      
Sbjct: 196 PIAVTFAFFGDGNFQVLDPNLKEEEVMGGRITITINSQGEICAVQKGG-GVGVSASEVMR 254

Query: 219 MLNLAKDRIADLIKLQKDVIS 239
            L +A  +   + +  K  +S
Sbjct: 255 CLRIAAAKAQSMTETLKKAVS 275


>gi|311744161|ref|ZP_07717966.1| polyribonucleotide nucleotidyltransferase [Aeromicrobium marinum
           DSM 15272]
 gi|311312516|gb|EFQ82428.1| polyribonucleotide nucleotidyltransferase [Aeromicrobium marinum
           DSM 15272]
          Length = 753

 Score = 95.2 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 93/255 (36%), Gaps = 34/255 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +RE+S    V     GS L + G+T +L   T      LE+K+      T
Sbjct: 354 VRIDGRGLADIRELSAEVSVIPRVHGSALFQRGETQIL-GVTTLNMLDLEQKLDTLSPET 412

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           K  ++   Y   P STG   +  +   R+ G       + GRAL  V+         I  
Sbjct: 413 KRRYMH-NYNFPPFSTGETGRVGSPKRREIGHG----ALAGRALLPVLPTREEFPYAIRQ 467

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP- 173
             + + ++G T   ++  + + L +                 L+  VA I+ G++ G   
Sbjct: 468 VSEALSSNGSTSMGSVCASTLGLLNAGV-------------PLRAPVAGIAMGLISGEVD 514

Query: 174 -------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                  + D+   ED+  D+D     T    I  +Q   +      D     LN AK  
Sbjct: 515 GRTEYVTLTDILGAEDAFGDMDFKVAGTPEF-ITALQLDTKLDGIPADVLAGALNQAKGA 573

Query: 227 IADLIKLQKDVISNE 241
              ++ +    I   
Sbjct: 574 RLTILDVMAQAIDEP 588



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 75/246 (30%), Gaps = 37/246 (15%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM--LPR 68
           R +     V  + A GS      D  +L +AT   + P    +     I  E  M    R
Sbjct: 32  RTVRFETGVLAQQAAGSVSAYLDDDTMLLSATTAGRHPKEFLDFFPLTIDVEERMYAAGR 91

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR    +    R+I R LR           Q++I+   +  D      
Sbjct: 92  IPGSFFRRE---GRPSEDAILTCRLIDRPLRPTFKKGLRNEVQVVINVMALNPDTPYDVL 148

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           AI  A  +                      G V A    ++ G  +    + +      D
Sbjct: 149 AINAASASTQ-------------ISGLPFTGPVGATRVALIDGQWVAFPSHSQLEEAVFD 195

Query: 189 ANFV--------MTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADL 230
                        +    I+ V+  +  AT+          +++     L  AK  I  +
Sbjct: 196 MVVAGRIAAQADGSSDVAIMMVEAESTEATWDLVQSGVQAPTEEVVAGGLEAAKVAIRQM 255

Query: 231 IKLQKD 236
            + Q +
Sbjct: 256 CEAQSE 261


>gi|210615800|ref|ZP_03290781.1| hypothetical protein CLONEX_02999 [Clostridium nexile DSM 1787]
 gi|210150136|gb|EEA81145.1| hypothetical protein CLONEX_02999 [Clostridium nexile DSM 1787]
          Length = 696

 Score = 95.2 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 75/228 (32%), Gaps = 25/228 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
           R  GR  +Q+R ++    +     GS +   G T  + T T          I        
Sbjct: 312 RPDGRAIDQIRPLAAETDIIPRVHGSAMFTRGQTQ-ICTITTLAPLSEAQRIDGLDEAET 370

Query: 60  TAEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  Y M   +  +    E    R  G R      +  RAL  V+         I    + 
Sbjct: 371 SKRY-MHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPTEEEFPYAIRTVSET 429

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY------ 172
            +++G T  A+I  + ++L                   +K  VA IS G++ G       
Sbjct: 430 FESNGSTSQASICASSMSLMAAGV-------------PIKSAVAGISAGLVTGDTDDDYL 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
            + D+   ED   D+D     T  G I  +Q   +    ++      +
Sbjct: 477 VLTDIQGLEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAI 523



 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 79/226 (34%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    V+  A G+ L+ +G+T +L+TAT      E +  +  + ++       G +
Sbjct: 12  RTLRVDVGRVAAQANGAALMHYGETVVLSTATASEKPREGIDFFPLSVEYEEKLYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 72  P---GGFNKRE---GKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  +    GM+ G  + + +  + +  D
Sbjct: 126 LTAMLGSAIATA-------------ISDIPFDGPTSTTQVGMIDGEFVFNPNAAQRAVSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +      +  A +   ++IK
Sbjct: 173 MQLTVASTRD-KVIMIEAGANEVP--EAKMIEAIFAAHEVNQEVIK 215


>gi|312862624|ref|ZP_07722865.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           vestibularis F0396]
 gi|311101884|gb|EFQ60086.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           vestibularis F0396]
          Length = 745

 Score = 95.2 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 89/249 (35%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI---RNTKH- 56
           +R  GR+ +++R +           GS L   G T  L+  TL       +    + ++ 
Sbjct: 317 VRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPMSDTQLIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G+  +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFLHHYNFPQYSVGDTGR----YGAPGRREIGHGALGERALAQVLPSVEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + +  +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRRG-ITALQMDIKISGITPAILEEALAQAKVARFEILD 538

Query: 233 LQKDVISNE 241
           + + VI+  
Sbjct: 539 VIEAVIAEP 547



 Score = 79.4 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 82/232 (35%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           R + +    V+K A G+ +V++GDT +L+ A + +K      +     +       G  P
Sbjct: 13  RPLVVEVGHVAKQANGAVVVRYGDTTVLSAAVMSKKMATADFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +         I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVAYAAEDFIINPSASDKDVSQL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D     T    I  V+  A+    S+D     L    + I +L+  Q  +++
Sbjct: 174 DLTVAGTKEA-INMVESGAQE--LSEDIMLQALLKGHEAIQELVDFQNYIVA 222


>gi|261878984|ref|ZP_06005411.1| polyribonucleotide nucleotidyltransferase [Prevotella bergensis DSM
           17361]
 gi|270334369|gb|EFA45155.1| polyribonucleotide nucleotidyltransferase [Prevotella bergensis DSM
           17361]
          Length = 616

 Score = 95.2 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 89/242 (36%), Gaps = 28/242 (11%)

Query: 3   LSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       IS+    V+K A+G+ +++ G+T LL T    +E VP            
Sbjct: 11  PDGRT------ISIETGKVAKQADGAAVLRLGNTVLLATVCAAKEAVPGTDFMPLQVDYR 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +Y    R  G   KRE   G+         R+I RALR +          + +   ++ 
Sbjct: 65  EQYSAAGRFPGGFTKRE---GKPSDEEILTSRLIDRALRPLFPADYHCE--VYVQVMLLS 119

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADG           V   D L      +            ++ +    + G  +++  + 
Sbjct: 120 ADG-----------VDQPDALAGFAASAAMACSDIPFDYTISEVRVARVNGEFVINPTFQ 168

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +    D+D     T   +I+ V+G  E     +    A L  A + I  +  LQ++ +S 
Sbjct: 169 QMEEADMDLMVGATKD-NIMMVEG--EMKEVQETDLIAALKAAHEAIKPMCVLQEE-LSK 224

Query: 241 EV 242
           E+
Sbjct: 225 EL 226



 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 87/251 (34%), Gaps = 30/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR----NTKH 56
           +RL GR    +R I           GS + + G+T  L+T TL  K+   +     N  +
Sbjct: 323 LRLDGRGTTDIRPIWCEVSPLPMPHGSAIFQRGETMSLSTCTLGTKLDEKLVDNVLNRGY 382

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG    +  V  R+ G       +  R ++  +         + +  
Sbjct: 383 QRFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRGIKDQIPEDF--PYTVRLVS 436

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171
            +++++G +  A +    +AL D    M             K  VA I+ G++       
Sbjct: 437 QILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVAGIAMGLIKNPGEDK 483

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G +   Q   +    S +     L  AKD    +
Sbjct: 484 YAILSDILGDEDHLGDMDFKTTGTKDG-LTATQMDIKCDGLSFEILEKALMQAKDAREHI 542

Query: 231 IKLQKDVISNE 241
           +      +S  
Sbjct: 543 MGEMMKTLSEP 553


>gi|319946257|ref|ZP_08020497.1| polyribonucleotide nucleotidyltransferase [Streptococcus australis
           ATCC 700641]
 gi|319747639|gb|EFV99892.1| polyribonucleotide nucleotidyltransferase [Streptococcus australis
           ATCC 700641]
          Length = 783

 Score = 95.2 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 82/241 (34%), Gaps = 26/241 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 362 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSILTLAPMGETQIIDGLDPEYK 421

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 422 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 477

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 478 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 524

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 525 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 583

Query: 233 L 233
           +
Sbjct: 584 V 584



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 58  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 117

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 118 ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 171

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 172 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLL 218

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 219 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 267


>gi|148998264|ref|ZP_01825733.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP11-BS70]
 gi|147755907|gb|EDK62951.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP11-BS70]
          Length = 775

 Score = 95.2 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 355 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 414

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 415 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 470

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 471 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 517

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 518 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 576

Query: 233 LQKDVI 238
           + +  I
Sbjct: 577 VIEATI 582



 Score = 82.8 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 51  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 110

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 111 ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 164

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 165 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 211

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 212 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELITFQEEIVA 260


>gi|15902560|ref|NP_358110.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae R6]
 gi|116515732|ref|YP_816014.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae D39]
 gi|15458089|gb|AAK99320.1| Polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           R6]
 gi|116076308|gb|ABJ54028.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           D39]
          Length = 775

 Score = 94.8 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 355 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 414

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 415 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 470

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 471 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 517

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 518 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 576

Query: 233 LQKDVI 238
           + +  I
Sbjct: 577 VIEATI 582



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 51  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 110

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 111 ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 164

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 165 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 211

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 212 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 260


>gi|222626193|gb|EEE60325.1| hypothetical protein OsJ_13416 [Oryza sativa Japonica Group]
          Length = 248

 Score = 94.8 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 72/198 (36%), Gaps = 17/198 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R  S TR     A GS     GDT +L      +       N +   I  
Sbjct: 5   RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEV 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            +               ++G+ G + +E +  + R L+S+  L+   +    +   V+  
Sbjct: 65  VWK-------------PMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGN 111

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYG 180
           DG     +     +        ++   +       LK    AI CG+L  G  I+D +  
Sbjct: 112 DGS---VSFCRNVLLSIVSGCLLDYEHSLVFAGIPLKHLAVAIGCGVLEDGEVILDTNKA 168

Query: 181 EDSTIDVDANFVMTDSGH 198
           E+  +   A+ V  +S  
Sbjct: 169 EEQQLKSFAHLVFPNSRK 186


>gi|170039801|ref|XP_001847711.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Culex
           quinquefasciatus]
 gi|167863390|gb|EDS26773.1| polyribonucleotide nucleotidyltransferase 1, mitochondrial [Culex
           quinquefasciatus]
          Length = 759

 Score = 94.8 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 87/247 (35%), Gaps = 16/247 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR  + +R+IS +  + K   GS L + G T +  T  L+        + +      
Sbjct: 359 RCDGRYLDDLRKISSSVNMHKPLHGSALFQRGQTQVFATVALDSQESALKLDPITSLDMG 418

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +TG   K     G  G R      +  + L  ++         I 
Sbjct: 419 VKSKNFFLHYEFPPYATGETGK----IGPVGRREIGHGALAEKGLLPIIPND--NPFTIR 472

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A +    +AL D    +++ +    +  + K      +  +     
Sbjct: 473 LTAEVLESNGSSSMATVCAGSMALMDAGIPVQEAAAGVAIGLMTKYENND-TKHLQDYRI 531

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + DL   ED   D+D     T  G +  +Q   +            L  A +    ++ L
Sbjct: 532 LTDLLGIEDYLGDMDMKVAGTRRG-MTAIQADIKVPGIPLKVVMESLQKAMEARFKILDL 590

Query: 234 QKDVISN 240
             + IS 
Sbjct: 591 MNESIST 597



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 84/234 (35%), Gaps = 30/234 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + ++    +++A+G  +V  GDT ++ TA +  + P    N     +  +Y     + 
Sbjct: 52  RVVRISSGKYARFADGCSVVTVGDTAVMVTA-VARQKPAGGSNASFLPLVVDYRQKAAAA 110

Query: 71  GNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
           G R+    +    G   +EI   R++ R++R +         Q++ +   I +       
Sbjct: 111 G-RIPTNFLRREMGPSEKEILAARLVDRSMRPLFPAEFRCDTQLVCNMLAIDSSNLPDVQ 169

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           AI  A  AL                     G V A+  G++    I++    E     +D
Sbjct: 170 AINAASAALS-------------LSDIPWNGPVGAVRVGLVDNEIIINPTRKELQLSALD 216

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD-------LIKLQK 235
                T    +V ++G       +++     +   K    +       + KLQK
Sbjct: 217 LVVSATKQNLVVMLEG--RGNIVNENELRMAI---KKGTQEAQLIINGIEKLQK 265


>gi|148983970|ref|ZP_01817289.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP3-BS71]
 gi|147924117|gb|EDK75229.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP3-BS71]
          Length = 775

 Score = 94.8 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 355 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 414

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 415 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 470

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 471 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 517

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 518 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 576

Query: 233 LQKDVI 238
           + +  I
Sbjct: 577 VIEATI 582



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 51  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 110

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 111 ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 164

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 165 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 211

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 212 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 260


>gi|116627040|ref|YP_819659.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           thermophilus LMD-9]
 gi|122268357|sp|Q03MV9|PNP_STRTD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116100317|gb|ABJ65463.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Streptococcus thermophilus LMD-9]
          Length = 741

 Score = 94.8 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 86/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----H 56
           +R  GR+ +++R +           GS L   G T  L+  TL       + +       
Sbjct: 317 VRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPMSDTQLVDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +  A   R+ G       +  RAL  V+         I +  
Sbjct: 377 KRFLHHYNFPQYSVGKTGRYGAPGRREIGHGV----LGERALAQVLPSVEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + +  +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRLG-ITALQMDIKISGITPAILEEALAQAKVARFEILD 538

Query: 233 LQKDVISNE 241
           + +  I+  
Sbjct: 539 VIESAIAEP 547



 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 83/234 (35%), Gaps = 26/234 (11%)

Query: 10  QMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGM 65
           + R + +    V+K A G+ +V++GDT +L+ A + +K      +     +       G 
Sbjct: 11  EGRPLVVEVGQVAKQANGAVVVRYGDTTVLSVAVMSKKMATADFFPLQVNYEEKMYAAGK 70

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
            P   G   KRE   GR    +    R+I R +R +         Q+I        +   
Sbjct: 71  FP---GGFSKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASA 124

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
             AA+ G+ +AL                     G +A +         I++    +    
Sbjct: 125 PMAAMFGSSLALS-------------ISDIPFNGPIAGVQVAYAAEDFIINPSASDKEVS 171

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            +D     T    I  V+  A+    S+D     L    + I +L+  Q  +++
Sbjct: 172 HLDLIVAGTKEA-INMVEAGAQE--LSEDIMLQALLKGHEAIQELVDFQNYIVA 222


>gi|226494746|ref|NP_001148711.1| exosome complex exonuclease RRP43 [Zea mays]
 gi|195621578|gb|ACG32619.1| exosome complex exonuclease RRP43 [Zea mays]
          Length = 306

 Score = 94.8 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 96/265 (36%), Gaps = 43/265 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+  R+  + R  ++       A GS LV+ GDT +L +  LE   P        G ++
Sbjct: 39  VRIDARRLREARTTTVALGAVSSAHGSALVRVGDTAMLASVKLEVMSPS-AEYPDEGSVS 97

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD------LSALGSRQ--- 111
            E+ M P  +   + R        GRS E+  +I +AL  V+       L  L       
Sbjct: 98  VEFHMPPICSP--LVRP-------GRSAEVAPVISKALEDVLMSSRMLNLKDLCLITGKA 148

Query: 112 ---IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV------------ 156
                +D   + ADG    AA+  A  A       +    +  +L  V            
Sbjct: 149 SWLAYLDIYCLNADGSLFDAALISAVSAFTHLEIPLVSVGDDGKLFTVGGNDGKNKFELV 208

Query: 157 --------LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
                   L     +++C +  G  + D    E+S I+     V+  S  +V +Q     
Sbjct: 209 NREKRKLTLGDIPLSLTCALHKGCILTDPTSEEESIIETYVTVVVDSSDRLVSLQKVG-G 267

Query: 209 ATFSQDHFFAMLNLAKDRIADLIKL 233
              S       ++LAK+R   L ++
Sbjct: 268 TVTSMATIKECISLAKERRLRLREI 292


>gi|170087298|ref|XP_001874872.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650072|gb|EDR14313.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 255

 Score = 94.8 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 61/179 (34%), Gaps = 21/179 (11%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
            R    +R I L   +   A GS  ++  +T +        +    +   + G +  +  
Sbjct: 37  NRASVDIRPIFLQPGLINQATGSAYIETQNTKIACAVFGPRQAKN-VAFNEKGRLNVDVK 95

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG- 123
             P S     +R A       RS  I   I +A+ S V L  L    I I   ++++DG 
Sbjct: 96  FAPFSCD---RRRAPMRDAEDRS--IAMAIHQAISSSVRLDVLPKSVIDIFITIVESDGI 150

Query: 124 -GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
            G   A +  A  AL D                 + G VA+ S   +     +D    E
Sbjct: 151 EGCVAAGVIVASTALTDAGI-------------EIFGLVASCSAAAVGEDIWLDPSLRE 196


>gi|226372912|gb|ACO52081.1| Exosome complex exonuclease RRP43 [Rana catesbeiana]
          Length = 272

 Score = 94.8 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 84/250 (33%), Gaps = 25/250 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  ++ R  ++       A+GS LVK G+  ++     E   P  I     G+I  
Sbjct: 23  RPDGRDLSEFRTTTINVGSITTADGSALVKIGNCTVICGIKAEFATPP-IDAPNKGYIVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115
              + P  +          G  G  +Q   + I   +    ++    L    G    ++ 
Sbjct: 82  NVELTPLCSP-----RFRPGPPGEEAQVASQFIADVIENSQMILKEDLCIENGKLAWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV---------LKGHVAAI 164
           CD+  +   G      +     +L +        + +  L+QV         +  H  + 
Sbjct: 137 CDLICLDYGGNLLDTCMCALVASLRNARLPSVKINEETGLAQVNLSTRNALKIHKHPLST 196

Query: 165 SCGMLCG-YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           S  +    + +VD    E+S        V  + G +  ++     +  S +     ++ A
Sbjct: 197 SFAIFDNKHILVDPTNEEESLATGLMTIVTDEDGRLCTIRKPG-GSALSAEKLQDCISRA 255

Query: 224 KDRIADLIKL 233
             R  ++  L
Sbjct: 256 ITRHKEVQNL 265


>gi|168490522|ref|ZP_02714665.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           CDC0288-04]
 gi|182683523|ref|YP_001835270.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           CGSP14]
 gi|303253917|ref|ZP_07340038.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae BS455]
 gi|303260083|ref|ZP_07346056.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae SP-BS293]
 gi|303261267|ref|ZP_07347215.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae SP14-BS292]
 gi|303263932|ref|ZP_07349853.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae BS397]
 gi|303265923|ref|ZP_07351819.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae BS457]
 gi|303268305|ref|ZP_07354102.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae BS458]
 gi|182628857|gb|ACB89805.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           CGSP14]
 gi|183575025|gb|EDT95553.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           CDC0288-04]
 gi|302599093|gb|EFL66118.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae BS455]
 gi|302637401|gb|EFL67888.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638778|gb|EFL69240.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae SP-BS293]
 gi|302642143|gb|EFL72493.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae BS458]
 gi|302644507|gb|EFL74758.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae BS457]
 gi|302646337|gb|EFL76563.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae BS397]
          Length = 775

 Score = 94.8 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 355 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 414

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 415 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 470

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 471 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 517

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 518 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 576

Query: 233 LQKDVI 238
           + +  I
Sbjct: 577 VIEATI 582



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 51  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 110

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 111 ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 164

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 165 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 211

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 212 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 260


>gi|196005309|ref|XP_002112521.1| hypothetical protein TRIADDRAFT_25085 [Trichoplax adhaerens]
 gi|190584562|gb|EDV24631.1| hypothetical protein TRIADDRAFT_25085 [Trichoplax adhaerens]
          Length = 266

 Score = 94.8 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 80/250 (32%), Gaps = 23/250 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   Q R+ ++       A GS LVK G+T +L     E  VP  + +  HG+I 
Sbjct: 18  IRPDRRTFKQFRKTTVNVGSITTANGSALVKIGNTTMLCGIKTEFAVPK-LDSPDHGYIV 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR------QII 113
               + P  +     R    G Q    SQ +  +I     ++++L  L          I 
Sbjct: 77  PNVDLPPLCS--YRFRPGPPGEQAQVCSQYLADIIKSC--NLINLKDLCIVKEKLAWVIY 132

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG----------HVAA 163
           ID   +  DG    A++     AL        +   +     V K            +++
Sbjct: 133 IDLLCLDCDGNVLDASVIAMLAALRSAKFPKVEIDEEVDKPIVSKDESFSLNVNDCPISS 192

Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
                     + D    E++         + +   +  V         +       + LA
Sbjct: 193 TFVLFDKNLILADPTSEEENLSSGYLTITVNNDDGLSNVLKPG-GRGVNDAELNECITLA 251

Query: 224 KDRIADLIKL 233
             R  D+  L
Sbjct: 252 IKRARDMRDL 261


>gi|149005700|ref|ZP_01829439.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP18-BS74]
 gi|147762640|gb|EDK69600.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP18-BS74]
          Length = 775

 Score = 94.8 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 355 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 414

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 415 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 470

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 471 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 517

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 518 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 576

Query: 233 LQKDVI 238
           + +  I
Sbjct: 577 VIEATI 582



 Score = 82.4 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 51  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 110

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 111 ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 164

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 165 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 211

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    +  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 212 ELTVAGTKHA-VNMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 260


>gi|154485033|ref|ZP_02027481.1| hypothetical protein EUBVEN_02751 [Eubacterium ventriosum ATCC
           27560]
 gi|149733986|gb|EDM50105.1| hypothetical protein EUBVEN_02751 [Eubacterium ventriosum ATCC
           27560]
          Length = 688

 Score = 94.8 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 74/228 (32%), Gaps = 25/228 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
           R  GR  +Q+R ++    +     GS +   G T  +              I        
Sbjct: 306 RPDGRALDQIRPLAAEVDIVPRVHGSAMFTRGQTQ-ICNVCTLAPLSEAQKIDGLDENVK 364

Query: 60  TAEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           T  Y M   +  +    E    R  G R      +  +AL  V+         I    + 
Sbjct: 365 TKRY-MHHYNFPSYSVGETKPSRGPGRREIGHGALAEKALMPVLPSEEEFPYAIRTVSET 423

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY------ 172
            +++G T  A+   + ++L                   +K  VA ISCG++ G       
Sbjct: 424 FESNGSTSMASTCSSCMSLMAAGV-------------PIKSMVAGISCGLVTGETDDDYV 470

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
            + D+   ED   D+D     T  G I  +Q   +    ++D     +
Sbjct: 471 LLTDIQGLEDFFGDMDFKVTGTTEG-ITAIQMDIKIHGLTRDIVEGAI 517



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 81/234 (34%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+K A G+  + +GDT +L+TAT      E V  +  + +        G +
Sbjct: 6   RTLTVDVGRVAKQANGAAFMHYGDTTVLSTATASDKPREGVDFFPLSVEFEEKMYSVGKI 65

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    S    R+I R +R +          +      +  +    
Sbjct: 66  P---GGFNKRE---GKASENSVLTARVIDRPMRPLFPKDYRNDVSLNNLVMSVDPECRPE 119

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ ++                      G  A    GM+ G  +V+         D
Sbjct: 120 LVAMLGSAIS-------------TCISDIPFDGPCAMTQVGMVDGEFVVNPSQAVWDNGD 166

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    ++ ++  A      +      + +A D    +I+  + +++ 
Sbjct: 167 LQLTVASTKQ-KVIMIEAGANIIP--EAKMIEAIYMAHDINQTIIEFIEKIVAE 217


>gi|149002268|ref|ZP_01827210.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP14-BS69]
 gi|147759583|gb|EDK66574.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP14-BS69]
          Length = 775

 Score = 94.8 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 355 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 414

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 415 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 470

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 471 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 517

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 518 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 576

Query: 233 LQKDVI 238
           + +  I
Sbjct: 577 VIEATI 582



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 51  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 110

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 111 ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 164

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 165 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 211

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 212 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 260


>gi|328875787|gb|EGG24151.1| hypothetical protein DFA_06297 [Dictyostelium fasciculatum]
          Length = 329

 Score = 94.8 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 74/242 (30%), Gaps = 29/242 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT-KHGWIT 60
           R   R  NQ+R I   + +   A+GS     G + +L        V    +       + 
Sbjct: 85  RDDTRLSNQIRPIESEQALLNKADGSAKFSQGKSSVLAAVYGPIDVKTARKEKISKSVVD 144

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             +     +T    K             E + ++  A+ S++        QI +   V  
Sbjct: 145 VSFTPATGNTTYFDK-------------EREMLVRNAVESIILTLLHPRTQINVIVQVYS 191

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
            DG   + AI    +AL D    +    +   LS                    +D    
Sbjct: 192 NDGSIISCAINACCLALLDAGIELNCLISSITLS------------FTHDNQIYLDPTQK 239

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           E++     A + +     IV    +       +  +F  LN+AK     +    +  + N
Sbjct: 240 EENNSKGLAVYAINSKSEIV---MTKTTGIIGESLYFQGLNIAKQSCEKVSAYTRLAVRN 296

Query: 241 EV 242
            +
Sbjct: 297 RI 298


>gi|325265390|ref|ZP_08132114.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. D5]
 gi|324029391|gb|EGB90682.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. D5]
          Length = 695

 Score = 94.8 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 77/234 (32%), Gaps = 25/234 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
           R  GR  +Q+R +S    +     GS +   G T  + T T          I        
Sbjct: 312 RPDGRAIDQIRALSAETDLIPRVHGSAMFTRGQTQ-ICTVTTLAPLSDAQRIDGLDEAET 370

Query: 60  TAEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  Y M   +  +    E    R  G R      +  RAL  V+   +     I    + 
Sbjct: 371 SKRY-MHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPSESEFPYAIRTVSET 429

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY------ 172
            +++G T  A+I  + ++L                   +K  VA IS G++ G       
Sbjct: 430 FESNGSTSQASICASSMSLMAAGV-------------PIKAAVAGISAGLVTGDTDDDYL 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED   D+D     T  G I  +Q   +    ++      +   K  
Sbjct: 477 VLTDIQGLEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAIATTKKA 529



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 76/226 (33%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    V+K A G+ L+ +GDT +L TAT      E +  +  + ++       G +
Sbjct: 12  RTLRVDVGRVAKQANGAALMHYGDTTVLCTATASEKPREGIDFFPLSVEYNERLYSVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 72  P---GGFNKRE---GKASENAVLTCRVIDRPMRPLFPKDYRNDVTLENLVMSVDQDCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA +A                      G ++    G++ G  + +    +    D
Sbjct: 126 LTAMLGAAIA-------------TSISDIPFDGPISTTQVGLVDGEFVFNPTAAQKDISD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +      +  A +    +I 
Sbjct: 173 MALTVASTKE-KVIMIEAGANEVP--EAQMIDAIFAAHELNQKVIA 215


>gi|226287267|gb|EEH42780.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 300

 Score = 94.8 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 82/267 (30%), Gaps = 28/267 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI---RNTKHG 57
           +RL GR+ N++R +      +    GS  +  G+T ++       +           +  
Sbjct: 14  LRLDGRRWNELRLMQAQISTNPATSGSSYLAMGNTIVICMVHGPAEGRRSEATGSAREGA 73

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGR---------SQEIQRMIGRALRSVVDLSALG 108
            I+    +   S  +R K+   +G  GG          S ++   +  A +  +      
Sbjct: 74  IISVAVNIAGFSGVDRKKKSLAAGAGGGGGGGGGDRQASTDLAIALRDAFQPHLHTHLYP 133

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS--- 165
              I ++  V+ +DG    A I    +AL D    M        +    +    A     
Sbjct: 134 HSTISLNISVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPATPEMK 193

Query: 166 -CGMLCG--YPIVDLDYGEDSTIDVDANF----------VMTDSGHIVEVQGSAERATFS 212
             G +     P++D+   E+  +                 M D      +      +   
Sbjct: 194 RVGGINESLDPLLDMSMPEEQELPFMTVANSNPAPPGHDPMDDEEDNQMLSVVQMESGVH 253

Query: 213 QDHFFAMLNLAKDRIADLIKLQKDVIS 239
             +   M  +  D    + ++   V+ 
Sbjct: 254 ISYLETMFAVGFDGCKQVREILNGVLK 280


>gi|198419225|ref|XP_002123693.1| PREDICTED: similar to Exosome component 9 [Ciona intestinalis]
          Length = 385

 Score = 94.8 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 89/261 (34%), Gaps = 30/261 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR   + R I++      +  G C+V  G T ++     E   P   R ++ G + 
Sbjct: 24  IRIDGRGMLEYRGITIHFS-LDH--GCCVVNMGGTKVMAQVAAELCRPRESRQSE-GSLG 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--LRSVVDLSALGSRQ------I 112
            +  M   +            + G    E+Q+M+ R+  +   VDL  L  R       I
Sbjct: 80  VQVEMSMMAAP-----HLDPAKPGDSGAELQQMLERSIVMSQAVDLEELCVRVGEKSWNI 134

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVA 162
            I   V+  DG     A   +  +L    +           +    +K  +   L     
Sbjct: 135 QIFVHVLSHDGNLLDCATIASMTSLKHFKRPDVSVVGQEVTIHKFEDKHPIPLTLHHVPF 194

Query: 163 AISCGMLCGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
            +S     G    +VD    E+  +D      +     +  +Q + +    S++      
Sbjct: 195 CVSFAFFQGGGLMVVDPTLNEEKVMDGKLMVAVNKHKEVCCLQMNGQLQ-LSKEQILNCT 253

Query: 221 NLAKDRIADLIKLQKDVISNE 241
           N+A  +      + +  + N+
Sbjct: 254 NIASTKAQTFYDIMETSLEND 274


>gi|300121304|emb|CBK21684.2| unnamed protein product [Blastocystis hominis]
          Length = 273

 Score = 94.8 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 97/259 (37%), Gaps = 27/259 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR   + R+I++    +  ++ S +V  GDT +    T  E V  +  +   G  T
Sbjct: 20  IRVDGRNLTEFRDIAIDLSRTD-SQSSSIVSIGDTKV-CAITNCEIVSGYSDHPNEGLFT 77

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIII 114
               + P        RE  +        E+QR++ R+L+  + VD+ +L    G +   +
Sbjct: 78  IHVNVTPM-----GGREYTTELSDDVRFELQRVLERSLKDNNTVDVESLCIIPGEKVFSV 132

Query: 115 DCDV--IQADGGTRTAAITGAWVALHD----------CLQHMEDCSNKFQLSQVLKGHVA 162
            C V  I  +G    AA+  A  +L                +   + +  +   L     
Sbjct: 133 HCYVNIIDNNGNIFDAAVLAATSSLCYFRRPDYSINGTQVRIYAPNEQEPVPLCLHYQPI 192

Query: 163 AISCGMLCGYP-IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +IS  +L     ++D +  E++  +   + V+   G +  V         S+        
Sbjct: 193 SISFCLLDSELTLLDPNEREEAVKEGMISLVLNAFGELCGVHFLG-GIPVSESLLLRCGQ 251

Query: 222 LAKDRIADLIKLQKDVISN 240
           +A  +  D+  + K  +  
Sbjct: 252 IASAKANDISAILKKALEK 270


>gi|148988952|ref|ZP_01820352.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP6-BS73]
 gi|147925449|gb|EDK76526.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP6-BS73]
          Length = 775

 Score = 94.8 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 355 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 414

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 415 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 470

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 471 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 517

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 518 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 576

Query: 233 LQKDVI 238
           + +  I
Sbjct: 577 VIEATI 582



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 51  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 110

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 111 ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 164

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 165 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 211

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 212 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 260


>gi|148992301|ref|ZP_01822024.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP9-BS68]
 gi|149010792|ref|ZP_01832163.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP19-BS75]
 gi|147765273|gb|EDK72202.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP19-BS75]
 gi|147928927|gb|EDK79939.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP9-BS68]
          Length = 775

 Score = 94.8 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 355 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 414

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 415 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 470

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 471 EVLESNGSSSQASICAGTLAL-------------MTGGVPIKAPVAGIAMGLISDGNNYT 517

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 518 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 576

Query: 233 LQKDVI 238
           + +  I
Sbjct: 577 VIEATI 582



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 51  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 110

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 111 ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 164

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 165 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 211

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 212 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 260


>gi|229829166|ref|ZP_04455235.1| hypothetical protein GCWU000342_01251 [Shuttleworthia satelles DSM
           14600]
 gi|229792329|gb|EEP28443.1| hypothetical protein GCWU000342_01251 [Shuttleworthia satelles DSM
           14600]
          Length = 710

 Score = 94.8 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 76/230 (33%), Gaps = 29/230 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56
           R  GR  +Q+R +S    +     GS +   G T +    TL       +V     N  +
Sbjct: 325 RPDGRALDQIRPLSAEVDLIPRVHGSAMFTRGQTQICNIVTLAPLSEVQRVEGLDANVTN 384

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y     S G          R+ G       +  RAL  V+         I    
Sbjct: 385 KRYIHQYNFPSYSVGETKPSRGPGRREIGHG----ALAERALLPVLPTVEDFPYAIRAVS 440

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +  +++G T  A+   + ++L                   +K  VA ISCG++ G     
Sbjct: 441 ETFESNGSTSMASTCASCMSLMAAGV-------------PIKKMVAGISCGLVTGEDDDD 487

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
              + D+   ED   D+D     T  G I  +Q   +    ++      +
Sbjct: 488 YVLLTDIQGLEDFFGDMDFKVTGTKDG-ITAIQMDIKIHGLTRTIVEEAI 536



 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 83/236 (35%), Gaps = 31/236 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           RE+ +    V+K A G+ ++++G+T LL TAT      E +  +  + +        G  
Sbjct: 25  RELQIEVGKVAKQANGAVMIRYGETTLLCTATASEKPREGIDFFPLSVEFEEKYYSVGKF 84

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    S    R+I R +R +          + ++  V+  D   R
Sbjct: 85  P---GGFNKRE---GKASENSVLTARVIDRPMRPLFPKD--YRNDVTLNNLVLSVDPSCR 136

Query: 127 --TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+ G  +A                      G  A    GM+ G  +++    +   
Sbjct: 137 PELVAMIGTAMATA-------------ISDIPFDGPCAMTQVGMINGDLLINPSQSDWDN 183

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            D+      T    ++ ++  A     S       +  A D    +I L   +++ 
Sbjct: 184 GDLRLTVASTRD-KVIMIEAGANE--LSDQEMIEAIYKAHDVNQTIIALIDQMVAE 236


>gi|111657667|ref|ZP_01408397.1| hypothetical protein SpneT_02001144 [Streptococcus pneumoniae
           TIGR4]
          Length = 775

 Score = 94.8 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 355 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 414

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 415 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 470

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 471 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 517

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 518 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 576

Query: 233 LQKDVI 238
           + +  I
Sbjct: 577 VIEATI 582



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 51  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 110

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 111 ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 164

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 165 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 211

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 212 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 260


>gi|328790286|ref|XP_624243.3| PREDICTED: exosome complex exonuclease RRP45-like [Apis mellifera]
          Length = 414

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 88/266 (33%), Gaps = 37/266 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR   + R + +         GSC+V  G T ++   T + + P   R    G + 
Sbjct: 22  IRLDGRSLLEARPVKI---YFASNWGSCMVLLGQTRVIAQVTCDIQQPKTSR-PNEGMLH 77

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR------SVVDLSALG---SRQ 111
               + P +  +            GR  EI  +I R L         +DL +L     ++
Sbjct: 78  INVELNPMAAQHFD---------SGRQSEISILISRQLEKCYQDSKCIDLESLCIIADKK 128

Query: 112 II---IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG--------- 159
           +    +D +VI  DG     A      AL    +     + +  +               
Sbjct: 129 VWNLRVDINVINHDGNLIDCASIATLAALSHFHRPDVTSNGEDIIVHPFSEKDPLPLTLY 188

Query: 160 --HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
              V         G  ++D  Y E+          +     +  +  +    T + +   
Sbjct: 189 HYPVCVSFITFESGNTVMDPTYLEERIGVAQLTLGINSYRELCSLHFNYLTKTMTVEDVI 248

Query: 218 AML-NLAKDRIADLIKLQKDVISNEV 242
           + + + A +    L++  K+ + +++
Sbjct: 249 SAVSSYATNYAVQLVQQIKETVFSDI 274


>gi|119477397|ref|ZP_01617588.1| polyribonucleotide nucleotidyltransferase [marine gamma
           proteobacterium HTCC2143]
 gi|119449323|gb|EAW30562.1| polyribonucleotide nucleotidyltransferase [marine gamma
           proteobacterium HTCC2143]
          Length = 677

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 87/247 (35%), Gaps = 26/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR  N +R I     V   A GS L   G+T  +   TL           +   +  
Sbjct: 286 RIDGRDNNTVRPIQAEVGVLAKAHGSALFTRGETQAIGVTTLGTTRDAQLIDALEGKRED 345

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +    S R+ G      R+  R + +V+         I +  +
Sbjct: 346 NFMLHYNFPPYSVGECGRIGFTSRREVGHG----RLARRGVAAVLPNPEDFPYTIRVVAE 401

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGY---P 173
           + +++G +  A+   A +++ +                 LK  VA I+ G++  G     
Sbjct: 402 ITESNGSSSMASACVASMSMMEAGV-------------PLKAPVAGIAMGLIKEGERFAV 448

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T +G +  +Q   +    ++      L  A      ++  
Sbjct: 449 LTDILGDEDHLGDMDFKVAGTANG-VTALQMDIKIEGINEQIMSIALEQALTARLHILGQ 507

Query: 234 QKDVISN 240
              VIS 
Sbjct: 508 MNAVISE 514



 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 67/210 (31%), Gaps = 27/210 (12%)

Query: 29  LVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQG 84
           +V  GD  +L T       +E +  +     +   +   G +P   G   KREA   R  
Sbjct: 1   MVTVGDVQVLCTVVGAKSAKEGMDFFPLGVHYQEKSYAVGKIP---GGFFKREA---RPS 54

Query: 85  GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM 144
            +     R+I R +R +         Q++        D     AA+ G   AL       
Sbjct: 55  EKETLTSRLIDRPMRPLFPKGFKNEVQVVCTVMSADHDTDPDIAALIGTSAALS------ 108

Query: 145 EDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ 203
                         G V A   G       I++  Y + +   +D     T    ++   
Sbjct: 109 -------ISGLPFGGPVGAARVGFTADNGYILNPSYSQLAGSALDMVVAGTSDAVLMV-- 159

Query: 204 GSAERATFSQDHFFAMLNLAKDRIADLIKL 233
             +E    S+D     +  A   +  +IK+
Sbjct: 160 -ESEAQELSEDQMLGAVLFAHQEMQTVIKV 188


>gi|332023404|gb|EGI63647.1| Exosome complex exonuclease RRP43 [Acromyrmex echinatior]
          Length = 278

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 86/258 (33%), Gaps = 25/258 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+    R +S+       A+ S + K GDT  +     E   P       HG+I 
Sbjct: 18  VRTDGRKFLSFRPVSVNVSSIVQADSSAIFKLGDTTAVCGIKAELAAPK-ADTPDHGYIV 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALG---SRQIII- 114
               + P  +          G    ++Q + + I   L   + +DL  L    S+ + + 
Sbjct: 77  PNVELSPLCSSKFR-----PGPPSEQAQVLSKFIDIILSNSAALDLKDLCICKSKLVWVL 131

Query: 115 DCDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAA 163
            CD+  +  +G    A       AL               +   + K +   +++    +
Sbjct: 132 YCDILCLNYNGSVIDACTGALMAALKTLTLPEVNYTKETALTIVNPKNRKKFIVRTLPIS 191

Query: 164 ISCGMLCGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
            S  +     +V D    E+       + VM D   I  V         SQ+     L +
Sbjct: 192 TSFAVFEKRLLVADPTDDEEDLSSGKFSIVMDDEEKICYVHKPG-GIPISQNLLSKGLEM 250

Query: 223 AKDRIADLIKLQKDVISN 240
           AK R   +  +    IS 
Sbjct: 251 AKTRAKLVRSVINAAIST 268


>gi|115485229|ref|NP_001067758.1| Os11g0311300 [Oryza sativa Japonica Group]
 gi|113644980|dbj|BAF28121.1| Os11g0311300 [Oryza sativa Japonica Group]
          Length = 300

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 92/265 (34%), Gaps = 43/265 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R+  + R  ++       A GS LV+ GDT +L +  LE   P        G I 
Sbjct: 33  VRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASIKLEVMSPSGEA-PDEGSIA 91

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR------SVVDLSALGSRQ--- 111
            E+ M P  +   + R        GR  E+  +I + L        +++L  L       
Sbjct: 92  VEFHMPPICSP--LVRP-------GRPAEVAPVISKNLEDILMSSGMLNLKELCLISGKA 142

Query: 112 ---IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS-------------------- 148
                +D   + ADG    AA+  A  A       +                        
Sbjct: 143 SWLAYLDVYCLNADGSLFDAALISAVAAFTHLEIPLVSVGDDGRVFTVGGNEGKAKYELV 202

Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
           N+ +    +     +++C +     + D    E+S I+     V+  S  IV +Q     
Sbjct: 203 NREKRKLTITNVPFSLTCALHKDNVLADPTAEEESIIETSVTIVLDSSDQIVSIQKPG-G 261

Query: 209 ATFSQDHFFAMLNLAKDRIADLIKL 233
           A  S       ++LAKDR   L ++
Sbjct: 262 AVTSMTTIKECISLAKDRRRKLREI 286


>gi|225164705|ref|ZP_03726942.1| Polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium
           TAV2]
 gi|224800695|gb|EEG19054.1| Polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium
           TAV2]
          Length = 747

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 58/262 (22%), Positives = 90/262 (34%), Gaps = 40/262 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R    +R ++          GS L + GDT  L TATL         +   G  T
Sbjct: 315 LRADKRDAKTIRPLASEVGTLPRVHGSALFQRGDTQTLVTATLGPTKEAQDMDGLTGGAT 374

Query: 61  -----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P S G   +     G  G R      +  R+L  V+    +    I + 
Sbjct: 375 SKSFILHYNFPPYSVGETGRF----GNPGRREIGHGALAERSLVPVLPPEDVFPYTIRLV 430

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-----C 170
            D++ ++G T  A+I G  +AL D                 +   VA ISCG++      
Sbjct: 431 SDIMASNGSTSMASICGGCLALMDAGV-------------PIIAPVAGISCGLMTSNKDD 477

Query: 171 GYP-----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
           G       I D+   ED   D+D     T SG I   Q   +      +     +  A+D
Sbjct: 478 GSIDKWVTITDILGEEDHFGDMDFKLAGTTSG-ITGFQLDLKIKGLPIEIARTAIFQARD 536

Query: 226 RIADLIKLQ-------KDVISN 240
              +++K         +  +S 
Sbjct: 537 ARVEILKAMLGAIPAPRKALST 558



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 89/237 (37%), Gaps = 32/237 (13%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
            I  T   ++K+A G+  V  G+T++   AT    ++     +     +    +  G  P
Sbjct: 13  NIKFTTGDMAKFANGAVTVSIGETNVFVAATAATTIKPGQDFFPLTVDYREKYSAAGRFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
              G   KRE   G+   +     R+  R  R +     L   Q++    ++ AD     
Sbjct: 73  ---GGYFKRE---GKPSEKEILTSRLCDRPCRPLFPEGFLNEVQVV--GLLLSADQLHEA 124

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
             A + GA  AL                     G + A+    + G  + +    +  + 
Sbjct: 125 DIAMVNGASAALA-------------ISDIPWAGPIGAVRVAQIDGQFVANPTIEQMFSS 171

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            +D  +V T+   ++ ++GSA++    +D F   L  A   I  +I   K+ ++ +V
Sbjct: 172 SLDLIYVGTEKD-MLMIEGSADQIP--EDRFVEALEFAHQAIQPIIAAIKE-LAAKV 224


>gi|261838537|gb|ACX98303.1| polynucleotide phosphorylase [Helicobacter pylori 51]
          Length = 688

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 87/249 (34%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------------TLEEKVP 48
           +R   R   ++R I +   +   A  S L   G T  L               +LE K P
Sbjct: 313 IRPDKRALEEVRPILIESGLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGATSRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK    
Sbjct: 476 -----LSDISGLEDTEGDMDFKIAGNLEG-ITAMQMDTKMSGIPLEVLYQALLQAKKARE 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 73/222 (32%), Gaps = 38/222 (17%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S + + G T +L +  +E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLMYRLGKTIILASVCVERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
                         +  F         V+A     +    +++ +    +   +D     
Sbjct: 122 ----LQVSALNAASAALFLSHIAPIKSVSACRIARIDNEFLINPNTSLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEV-----QGSAERATFSQDHFFAMLNLAKDRIAD 229
           T +S +++E+     Q +A             L LA+  + +
Sbjct: 178 TKESLNMIEMRSLGQQLNALEEPL----MLKALELAQKSLKE 215


>gi|282858733|ref|ZP_06267886.1| polyribonucleotide nucleotidyltransferase [Prevotella bivia
           JCVIHMP010]
 gi|282588482|gb|EFB93634.1| polyribonucleotide nucleotidyltransferase [Prevotella bivia
           JCVIHMP010]
          Length = 748

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 90/250 (36%), Gaps = 30/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           R+ GR  +++R I           GS L + G+T  L+T TL  K+   + +      + 
Sbjct: 316 RMDGRATDEIRHIWSEVDTLPMPHGSALFQRGETMSLSTCTLGTKMDEKMVDNVLEKSYQ 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL++ +         + +   
Sbjct: 376 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRALKNQIPTDF--PYTVRLVSQ 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D    M             K  V+ I+ G++        
Sbjct: 430 ILESNGSSSMATVCAGTLALLDAGVPM-------------KKPVSGIAMGLIKNPGEDKY 476

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I   Q   +    S +     L  AK     ++
Sbjct: 477 AILSDILGDEDHLGDMDFKTTGTKDG-ITATQMDIKCDGLSYEILEKALMQAKAGREHIL 535

Query: 232 KLQKDVISNE 241
               + +S  
Sbjct: 536 GKMMETMSEP 545



 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 90/232 (38%), Gaps = 22/232 (9%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWITAEYGMLPRS 69
           R IS+    V+K A+G+ +++ G+T LL T    +E VP             +Y    R 
Sbjct: 5   RTISIETGKVAKQADGAAMLRMGNTVLLATVCAAKEAVPGTDFMPLQVDYREQYSAAGRF 64

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G   KRE   G+         R++ R LR +         ++ +   ++ ADG      
Sbjct: 65  PGGFTKRE---GKANDDEILTSRLVDRVLRPLFPAD--YHTEVYVQVMLLSADG------ 113

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
                +   D L      +        ++  ++ +    + G  +++  + +    D+D 
Sbjct: 114 -----IDQPDALAGFAASAALAASDIPIEYPISEVRVARINGEYVINPTFPQMKEADMDI 168

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
               T   +I+ V+G  E    S+      L  A + I  + +LQ++ +S E
Sbjct: 169 MVGATKD-NIMMVEG--EMDEVSELDLIGALKAAHEAIKPMCELQEE-LSKE 216


>gi|260804641|ref|XP_002597196.1| hypothetical protein BRAFLDRAFT_203413 [Branchiostoma floridae]
 gi|229282459|gb|EEN53208.1| hypothetical protein BRAFLDRAFT_203413 [Branchiostoma floridae]
          Length = 723

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 84/248 (33%), Gaps = 16/248 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT------- 54
           R  GR    +R+IS    + K   GS L + G T +L+T T + K      +        
Sbjct: 316 RCDGRDMTSLRDISCDVDLYKPLHGSALFQRGQTQVLSTVTFDSKQASLKMDPIAEILGG 375

Query: 55  -KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    +  + S R+ G       +   AL+ VV         I 
Sbjct: 376 VKQKDFMLHYVFPPYATNETGRVSSNSRRELGHG----ALAENALKPVVPSDF--PFTIR 429

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G +  A+     +AL D    +        +  V +         +     
Sbjct: 430 LTAEVLESNGSSSMASACSGSLALMDAGVPISSPVAGVAIGLVTRTDPNN-PTEIQDYKL 488

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED   D+D     T  G +  +Q   +               A    +D+I +
Sbjct: 489 LTDILGIEDYMGDMDFKMAGTKKG-VTALQADIKLPGLPLKIIMEATQQATMAKSDIINI 547

Query: 234 QKDVISNE 241
               ++  
Sbjct: 548 MNRALAKP 555



 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 87/234 (37%), Gaps = 31/234 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R + ++    +++A+G  +V+ GDT  + TA    +      +     +T +Y     + 
Sbjct: 12  RVMRISTGKFARFADGCAVVEIGDTSAMVTAVSRTR----PSSAGFLPLTVDYRQKAAAA 67

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G      ++RE     Q  R   + R+I R++R +     +   Q+I +   +       
Sbjct: 68  GRIPTTHLRRELA---QTDREILVSRLIDRSIRPLFPAGYMYETQVISNLLAVDGVNDPD 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            A+I GA  AL                     G + A+  G++    +++    + S   
Sbjct: 125 IASINGASTALA-------------LSDCPWNGPIGAVRVGIVDDEYVINPTRRQLSRSK 171

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK----LQKD 236
           ++      +   +V ++GSAE        F   +         +I+    LQK+
Sbjct: 172 LNLVVTGAERNLVVMLEGSAENVLLP--DFQRAIKTGIKETQKIIRGIQTLQKE 223


>gi|195978853|ref|YP_002124097.1| polynucleotide phosphorylase/polyadenylase [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|226702690|sp|B4U573|PNP_STREM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|195975558|gb|ACG63084.1| polyribonucleotide nucleotidyltransferase PnpA [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 714

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 86/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----H 56
           +R  GR+ +++R ++          GS L   G T  L+  TL       I +       
Sbjct: 317 VRPDGRRVDEIRPLAAEIDFLPMVHGSGLFTRGQTQALSVLTLAPMGDTQIIDGLEPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +  A   R+ G       +  RAL  V+         I +  
Sbjct: 377 KRFLHHYNFPQYSVGETGRYGAAGRREIGHG----ALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRQG-ITALQMDIKIEGITPQILEEALAQAKKARFEILD 538

Query: 233 LQKDVISNE 241
           L +  I+  
Sbjct: 539 LIEATIAEP 547



 Score = 81.7 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 85/231 (36%), Gaps = 26/231 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLPR 68
            + +    V+K A G+ +V++G++ +LT A + +K      +     +       G  P 
Sbjct: 14  PLVVEVGQVAKQANGATVVRYGESTVLTAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G  +KRE   GR    +    R+I R +R +         Q+I        D     A
Sbjct: 73  --GGWMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASAPMA 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +    + G  I++ D  +     ++
Sbjct: 128 AMLGSSLALS-------------ISDIPFNGPIAGVQVAYVEGEFIINPDKAQQEASLLE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                T    I  V+  A+     +      L +    I +LI  Q+++++
Sbjct: 175 LTVAGTKDA-INMVESGAKE--LPEAIMLEALLVGHKAIQELIAFQEEIVA 222


>gi|327537258|gb|EGF23997.1| polynucleotide phosphorylase/polyadenylase [Rhodopirellula baltica
           WH47]
          Length = 819

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 84/229 (36%), Gaps = 30/229 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRS 69
           +S     ++K A GS LV++G+T +L  A   T    +  +     +    A  G  P  
Sbjct: 82  LSFETGHIAKQAAGSVLVQYGETVVLVAAASGTPRPGIDFFPLMCDYRERLAAAGKFP-- 139

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV--IQADGGTRT 127
            G  +KRE   GR   +     R++ R +R +         Q+        +Q DG    
Sbjct: 140 -GGFLKRE---GRPSTKEILSSRLMDRPIRPLWPAGYKDEVQVQACVIASDLQNDGDVL- 194

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ G   ALH                   KG + ++  G + G  +      +    ++
Sbjct: 195 -AMIGGATALH-------------ISPLPFKGPLGSVRVGKVDGKLVAFPTADQLEQSEL 240

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D   V      +  ++G A      +D     +  A D I ++I LQ++
Sbjct: 241 DM-IVSGSRDMVAMIEGFANE--MPEDEMMEAIGFAHDAIREVIDLQEE 286



 Score = 89.0 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 89/242 (36%), Gaps = 27/242 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHG 57
           R  GR  N +R I     +     GS L + G+T  L T     + +E+    +++    
Sbjct: 381 RPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQALITIALGTSRDEQRVDGLQDEYSK 440

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
               +Y     S G          R+ G       +  R++  V+  +      I +  D
Sbjct: 441 KFMLDYNFPSYSVGECRPIRGPGRREIGHGC----LAERSVAPVLPSADDFPYTIRVISD 496

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
           + +++G +  A++ GA + L                   +   VA IS G++   P    
Sbjct: 497 ITESNGSSSMASVCGATLGL-------------MASGVPISNPVAGISVGLVQDGPDNWC 543

Query: 174 -IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            I D+   ED   D+D     T +G I  +Q   +    + D   A L  +++   +++K
Sbjct: 544 LITDILGTEDHFGDMDFKIAGTQNG-ITGIQLDLKVTGVTNDIIRATLKQSREARIEILK 602

Query: 233 LQ 234
             
Sbjct: 603 KM 604


>gi|111023614|ref|YP_706586.1| polynucleotide phosphorylase/polyadenylase [Rhodococcus jostii
           RHA1]
 gi|123339641|sp|Q0S208|PNP_RHOSR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|110823144|gb|ABG98428.1| polyribonucleotide nucleotidyltransferase [Rhodococcus jostii RHA1]
          Length = 757

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 91/251 (36%), Gaps = 32/251 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    +   A GS L + G+T +L   T  + V M  +    G  T
Sbjct: 356 FRIDGRGITDIRSLSAEVAIVPRAHGSALFERGETQIL-GVTTLDMVKMAQQVDSLGPET 414

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 415 TKRYMHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERALMPVLPSVEEFPYAIRQV 470

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            + + ++G T   ++  + +AL +                 LK  VA I+ G++      
Sbjct: 471 SEALSSNGSTSMGSVCASTLALLNAGV-------------PLKAPVAGIAMGLVSDQVDG 517

Query: 174 ------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                 + D+   ED+  D+D     T    +  +Q   +            L+ AKD  
Sbjct: 518 ETRYVALTDILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSKVLAGALSQAKDAR 576

Query: 228 ADLIKLQKDVI 238
           A ++++  + I
Sbjct: 577 ATILEVMAEAI 587



 Score = 43.9 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 20/180 (11%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  +RE   GR    +    R+I R LR           Q+++    +         AI
Sbjct: 90  GSFFRRE---GRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLNPQDLYDVVAI 146

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI----- 185
             A  +               +++ +      A           ++ +   D  +     
Sbjct: 147 NAASASTQIAGLPFSGPVGGVRVALITSDENKAGQWVAFPTVEQLE-NAVFDMVVAGRIV 205

Query: 186 -----DVDANFVMTD----SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                D D   +M +       I  + G A+    ++      L  AK  IA L   Q+ 
Sbjct: 206 SGSGDDADVAIMMVEAEATDNVISLIDGGAQAP--TEAIVAEGLEAAKPFIARLCTAQQQ 263


>gi|32473910|ref|NP_866904.1| polynucleotide phosphorylase/polyadenylase [Rhodopirellula baltica
           SH 1]
 gi|32444447|emb|CAD74445.1| polyribonucleotide nucleotidyltransferase [Rhodopirellula baltica
           SH 1]
          Length = 818

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 84/229 (36%), Gaps = 30/229 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRS 69
           +S     ++K A GS LV++G+T +L  A   T    +  +     +    A  G  P  
Sbjct: 82  LSFETGHIAKQAAGSVLVQYGETVVLVAAASGTPRPGIDFFPLMCDYRERLAAAGKFP-- 139

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV--IQADGGTRT 127
            G  +KRE   GR   +     R++ R +R +         Q+        +Q DG    
Sbjct: 140 -GGFLKRE---GRPSTKEILSSRLMDRPIRPLWPAGYKDEVQVQACVIASDLQNDGDVL- 194

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ G   ALH                   KG + ++  G + G  +      +    ++
Sbjct: 195 -AMIGGATALH-------------ISPLPFKGPLGSVRVGKVDGKLVAFPTADQLEQSEL 240

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D   V      +  ++G A      +D     +  A D I ++I LQ++
Sbjct: 241 DM-IVSGSRDMVAMIEGFANE--MPEDEMMEAIGFAHDAIREVIDLQEE 286



 Score = 89.0 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 89/242 (36%), Gaps = 27/242 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHG 57
           R  GR  N +R I     +     GS L + G+T  L T     + +E+    +++    
Sbjct: 381 RPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQALITIALGTSRDEQRVDGLQDEYSK 440

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
               +Y     S G          R+ G       +  R++  V+  +      I +  D
Sbjct: 441 KFMLDYNFPSYSVGECRPIRGPGRREIGHGC----LAERSVAPVLPSADDFPYTIRVISD 496

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
           + +++G +  A++ GA + L                   +   VA IS G++   P    
Sbjct: 497 ITESNGSSSMASVCGATLGL-------------MASGVPISNPVAGISVGLVQDGPDNWC 543

Query: 174 -IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            I D+   ED   D+D     T +G I  +Q   +    + D   A L  +++   +++K
Sbjct: 544 LITDILGTEDHFGDMDFKIAGTQNG-ITGIQLDLKVTGVTNDIIRATLKQSREARIEILK 602

Query: 233 LQ 234
             
Sbjct: 603 KM 604


>gi|315612684|ref|ZP_07887596.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           ATCC 49296]
 gi|315315271|gb|EFU63311.1| polyribonucleotide nucleotidyltransferase [Streptococcus sanguinis
           ATCC 49296]
          Length = 754

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 334 VRPDGRKVDEIRPLDAVVDYLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 393

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 394 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 449

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 450 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 496

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 497 VLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 555

Query: 233 LQKDVI 238
           + +  I
Sbjct: 556 VIEATI 561



 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 30  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 89

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 90  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 143

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 144 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLL 190

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 191 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 239


>gi|226366103|ref|YP_002783886.1| polynucleotide phosphorylase/polyadenylase [Rhodococcus opacus B4]
 gi|257096705|sp|C1B324|PNP_RHOOB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226244593|dbj|BAH54941.1| guanosine pentaphosphate synthetase/polynucleotide phosphorylase
           [Rhodococcus opacus B4]
          Length = 757

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 91/251 (36%), Gaps = 32/251 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    +   A GS L + G+T +L   T  + V M  +    G  T
Sbjct: 356 FRIDGRGITDIRSLSAEVAIVPRAHGSALFERGETQIL-GVTTLDMVKMAQQVDSLGPET 414

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 415 TKRYMHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERALMPVLPSVEEFPYAIRQV 470

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            + + ++G T   ++  + +AL +                 LK  VA I+ G++      
Sbjct: 471 SEALSSNGSTSMGSVCASTLALLNAGV-------------PLKAPVAGIAMGLVSDQVDG 517

Query: 174 ------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                 + D+   ED+  D+D     T    +  +Q   +            L+ AKD  
Sbjct: 518 ETRYVALTDILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSKVLAGALSQAKDAR 576

Query: 228 ADLIKLQKDVI 238
           A ++++  + I
Sbjct: 577 ATILEVMAEAI 587



 Score = 43.5 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 20/180 (11%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  +RE   GR    +    R+I R LR           Q+++    +         AI
Sbjct: 90  GSFFRRE---GRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLNPQDLYDVVAI 146

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI----- 185
             A  +               +++ +      A           ++ +   D  +     
Sbjct: 147 NAASASTQIAGLPFSGPVGGVRVALITSDENKAGQWVAFPTVEQLE-NAVFDMVVAGRIV 205

Query: 186 -----DVDANFVMTD----SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                D D   +M +       I  + G A+    ++      L  AK  IA L   Q+ 
Sbjct: 206 SGSGDDADVAIMMVEAEATDNVISLIDGGAQAP--TETIVAEGLEAAKPFIARLCTAQQQ 263


>gi|298502383|ref|YP_003724323.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|298237978|gb|ADI69109.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae TCH8431/19A]
          Length = 754

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 334 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 393

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 394 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 449

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 450 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 496

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 497 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 555

Query: 233 LQKDVI 238
           + +  I
Sbjct: 556 VIEATI 561



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 30  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 89

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 90  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 143

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 144 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 190

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 191 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 239


>gi|187611320|sp|Q7UR95|PNP_RHOBA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 753

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 84/229 (36%), Gaps = 30/229 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRS 69
           +S     ++K A GS LV++G+T +L  A   T    +  +     +    A  G  P  
Sbjct: 17  LSFETGHIAKQAAGSVLVQYGETVVLVAAASGTPRPGIDFFPLMCDYRERLAAAGKFP-- 74

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV--IQADGGTRT 127
            G  +KRE   GR   +     R++ R +R +         Q+        +Q DG    
Sbjct: 75  -GGFLKRE---GRPSTKEILSSRLMDRPIRPLWPAGYKDEVQVQACVIASDLQNDGDVL- 129

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ G   ALH                   KG + ++  G + G  +      +    ++
Sbjct: 130 -AMIGGATALH-------------ISPLPFKGPLGSVRVGKVDGKLVAFPTADQLEQSEL 175

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D   V      +  ++G A      +D     +  A D I ++I LQ++
Sbjct: 176 DM-IVSGSRDMVAMIEGFANE--MPEDEMMEAIGFAHDAIREVIDLQEE 221



 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 89/242 (36%), Gaps = 27/242 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHG 57
           R  GR  N +R I     +     GS L + G+T  L T     + +E+    +++    
Sbjct: 316 RPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQALITIALGTSRDEQRVDGLQDEYSK 375

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
               +Y     S G          R+ G       +  R++  V+  +      I +  D
Sbjct: 376 KFMLDYNFPSYSVGECRPIRGPGRREIGHGC----LAERSVAPVLPSADDFPYTIRVISD 431

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
           + +++G +  A++ GA + L                   +   VA IS G++   P    
Sbjct: 432 ITESNGSSSMASVCGATLGL-------------MASGVPISNPVAGISVGLVQDGPDNWC 478

Query: 174 -IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            I D+   ED   D+D     T +G I  +Q   +    + D   A L  +++   +++K
Sbjct: 479 LITDILGTEDHFGDMDFKIAGTQNG-ITGIQLDLKVTGVTNDIIRATLKQSREARIEILK 537

Query: 233 LQ 234
             
Sbjct: 538 KM 539


>gi|306829036|ref|ZP_07462227.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis ATCC
           6249]
 gi|304428841|gb|EFM31930.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis ATCC
           6249]
          Length = 737

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELVVETGKVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAERSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|331266884|ref|YP_004326514.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis
           Uo5]
 gi|326683556|emb|CBZ01174.1| polyribonucleotide nucleotidyltransferase [Streptococcus oralis
           Uo5]
          Length = 737

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELVVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAERSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|156743526|ref|YP_001433655.1| polynucleotide phosphorylase/polyadenylase [Roseiflexus
           castenholzii DSM 13941]
 gi|257096706|sp|A7NPZ1|PNP_ROSCS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|156234854|gb|ABU59637.1| Polyribonucleotide nucleotidyltransferase [Roseiflexus castenholzii
           DSM 13941]
          Length = 746

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 93/250 (37%), Gaps = 29/250 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R IS+   +     GS L   G T +LT ATL        R    G  TA
Sbjct: 321 RVDGRGPKDIRPISVEVGLIPRVHGSGLFTRGQTQVLTLATLGSPAEEQ-RLDDLGIETA 379

Query: 62  -----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R  G       +  R+L +V+         + +  
Sbjct: 380 KRYIHHYNFPPFSTGEIRRLGSPRRRDIGHG----ALAERSLLAVLPPKEEFPYTMRLVS 435

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171
           + + ++G +  A++ G+ +AL D                 ++  VA I+ G++ G     
Sbjct: 436 ETLSSNGSSSMASVCGSSLALMDAGV-------------PIRAPVAGIAMGLITGKDGRW 482

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G I  +Q   +    + +        A++    ++
Sbjct: 483 RVLTDIQGIEDHLGDMDFKVAGTAKG-ITGLQMDIKTTGITYEIMREAFAQAREGRLHVL 541

Query: 232 KLQKDVISNE 241
           +    VIS  
Sbjct: 542 EKMNAVISEP 551



 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 79/234 (33%), Gaps = 29/234 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM-----WIRNTKHGWITAEYGM 65
           R ++L     ++ A G+ +V++GDT LL TA +  K P      +     +       G 
Sbjct: 16  RTLTLETGRFAEQANGAVVVRYGDTMLLATA-VASKEPRTDTDFFPLTVDYEEKMYAAGK 74

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  KRE   G+    +    R+  R LR +         QII+    I      
Sbjct: 75  IP---GSFFKRE---GKPTEGAILTARLTDRPLRPLFPEGYRNEVQIIVTTFSID----- 123

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
                    V     L  +   +          G V A+  G + G   ++      +  
Sbjct: 124 --------MVNDPAPLSIIAASAALAISDIPFLGPVGAVQVGYIDGALQINPPMP--NMA 173

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           + D + V+  +   V +  +       ++     +         +  LQ +++ 
Sbjct: 174 NSDLDLVVAGTKEAVLMVEAG-ANELPEEVMLEAVIQGHQVCKQICDLQNELVK 226


>gi|167765957|ref|ZP_02438010.1| hypothetical protein CLOSS21_00448 [Clostridium sp. SS2/1]
 gi|317498464|ref|ZP_07956758.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|167712360|gb|EDS22939.1| hypothetical protein CLOSS21_00448 [Clostridium sp. SS2/1]
 gi|291558981|emb|CBL37781.1| polyribonucleotide nucleotidyltransferase [butyrate-producing
           bacterium SSC/2]
 gi|316894157|gb|EFV16345.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 696

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 75/227 (33%), Gaps = 23/227 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTATLEEKVPMWIRNTKHGWIT 60
           R  GR   Q+R +           GS L + G T ++  T          +        T
Sbjct: 312 RPDGRDIKQIRPLHAEVDCLPRVHGSALFQRGQTQVMTVTTLGSLSEAQRLDGIDVTETT 371

Query: 61  AEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             Y M   +  +    E    R  G R      +  RAL  V+         I    +++
Sbjct: 372 KRY-MHHYNFPSYSVGETRPSRGPGRREIGHGALAERALVPVLPSEEEFPYAIRTVSEIM 430

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY------P 173
           +++G T   +I  + ++L                   +K  VA IS G++ G        
Sbjct: 431 ESNGSTSQGSICASSLSLMAAGV-------------PVKAPVAGISVGLVTGEGDDDYII 477

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           + D+   ED   D+D     TD G I  +Q   +    ++      +
Sbjct: 478 LTDIQGLEDFFGDMDFKVAGTDKG-ITAIQMDIKIHGLTEQIIREAI 523



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 80/226 (35%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    V+  A G+  + +GDT +L+TAT      + +  +  + ++       G +
Sbjct: 12  RTLMVEVGRVAAQANGAAFMHYGDTVVLSTATASEKPRDGIDFFPLSVEYEEKLYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 72  P---GGYLKRE---GKPSENAILTDRVIDRPMRPLFPKDYRNDVALNNLVMSVDPDCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  A+   G++ G  +++    +    D
Sbjct: 126 LTAMLGSAIATA-------------ISDIPFDGPTASTMVGLIDGEFVINPTSAQKEVSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +D     +  A +   ++IK
Sbjct: 173 LALTVASTRE-KVIMIEAGANEVP--EDVMLEAIFKAHEVNQEIIK 215


>gi|312867935|ref|ZP_07728139.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           parasanguinis F0405]
 gi|311096339|gb|EFQ54579.1| polyribonucleotide nucleotidyltransferase [Streptococcus
           parasanguinis F0405]
          Length = 740

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSILTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A G+ +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGAVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  +++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGEIVINPTQEQAEHSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|307710641|ref|ZP_07647074.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis
           SK564]
 gi|307618584|gb|EFN97727.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis
           SK564]
          Length = 737

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A G+ +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGAVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|289168431|ref|YP_003446700.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis B6]
 gi|288907998|emb|CBJ22838.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis B6]
          Length = 737

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|240279480|gb|EER42985.1| exonuclease RRP41 [Ajellomyces capsulatus H143]
          Length = 265

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 80/249 (32%), Gaps = 20/249 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN---TKHG 57
           +RL GR+ N++R +      +  + GS  +  G+T ++       +           +  
Sbjct: 14  LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            ++    +   S  +R K+ A  G    + S ++   +  A +  +         I +  
Sbjct: 74  VVSVAVNVAGFSGVDRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHV 133

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA----ISCGMLCG- 171
            V+ +DG    A I    +AL D    M        +    +    A       G +   
Sbjct: 134 SVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAEPELTRVGGINES 193

Query: 172 -YPIVDLDYGEDSTID----VDANFVMTDSGHIV---EVQGS---AERATFSQDHFFAML 220
             P++D+   E+  +      + N   T    +    E Q        A     +   M 
Sbjct: 194 LDPLLDMSMPEEQELPFMTVANTNPAPTGDDSMDDQEENQMLSIVQMGAGVHISYLETMF 253

Query: 221 NLAKDRIAD 229
            +  D  A 
Sbjct: 254 AVGLDGCAR 262


>gi|238916832|ref|YP_002930349.1| polyribonucleotide nucleotidyltransferase [Eubacterium eligens ATCC
           27750]
 gi|238872192|gb|ACR71902.1| polyribonucleotide nucleotidyltransferase [Eubacterium eligens ATCC
           27750]
          Length = 723

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 73/230 (31%), Gaps = 29/230 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWIT 60
           R  GR  NQ+R ++    +     GS +   G T +    TL        +        T
Sbjct: 341 RPDGRAINQIRPLAAEVDIIPRVHGSAMFTRGQTQICDVVTLAPLSEAQKVDGLDENVTT 400

Query: 61  AE----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  +AL  V+         I    
Sbjct: 401 KRYIHHYNFPSYSVGETKPSRGPGRREIGHG----ALAEKALVPVLPSEEEFPYAIRAVS 456

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +  +++G T  A+   + ++L                   +K  VA ISCG++ G     
Sbjct: 457 ETFESNGSTSMASTCASCMSLMAAGV-------------PIKRMVAGISCGLVTGETDDD 503

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
              + D+   ED   D+D     T  G I  +Q   +    ++      +
Sbjct: 504 YIVLTDIQGLEDFFGDMDFKVTGTTEG-ITAIQMDIKIHGLTRPIVEEAI 552



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 79/234 (33%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    V   A G+ L+ +GDT +L+TAT      E +  +  + ++       G +
Sbjct: 41  RTLRVDIGRVCAQANGAALMHYGDTVVLSTATASKEPREGIDFFPLSVEYEEKMYAAGKI 100

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  +    
Sbjct: 101 P---GGFNKRE---GKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMSVDENCRPE 154

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  A    GM+ G  IV+    +    D
Sbjct: 155 LLAMIGSAIA-------------TSISDIPFDGPCATTQIGMIDGEFIVNPSQAQWQDGD 201

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    ++ ++  A      +D     +  A D    +I     +++ 
Sbjct: 202 LQLTVASTKQ-KVIMIEAGANEIP--EDKMIEAIYKAHDINQTIIAFIDKIVAE 252


>gi|183603099|ref|ZP_02710211.2| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           CDC1087-00]
 gi|183571256|gb|EDT91784.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           CDC1087-00]
          Length = 737

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|225854123|ref|YP_002735635.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae JJA]
 gi|254782740|sp|C1CCW4|PNP_STRZJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225723734|gb|ACO19587.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae JJA]
          Length = 737

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDLEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|225858425|ref|YP_002739935.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae 70585]
 gi|254782737|sp|C1C5V9|PNP_STRP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225720166|gb|ACO16020.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae 70585]
 gi|332202469|gb|EGJ16538.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           GA41317]
          Length = 737

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|294790571|ref|ZP_06755729.1| polyribonucleotide nucleotidyltransferase [Scardovia inopinata
           F0304]
 gi|294458468|gb|EFG26821.1| polyribonucleotide nucleotidyltransferase [Scardovia inopinata
           F0304]
          Length = 953

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 89/249 (35%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R +S    V     GS L + G+T +L   TL     E+    +      
Sbjct: 346 RIDGRGLRDIRTLSAEVDVVPRVHGSALFQRGETQILGVTTLNMLKMEQTTDALSGPSTK 405

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P STG   +  +   R+ G       +  RAL  V+         I    +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREVGHG----ALAERALIPVLPSREKFPYAIRQVSE 461

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            I ++G T   ++  + ++L D                 LK  VA I+ G++ G      
Sbjct: 462 AIGSNGSTSMGSVCASTMSLLDAGV-------------PLKAPVAGIAMGLVSGEVNGQM 508

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    I  +Q   +      D   A L  A +    
Sbjct: 509 VYKTLTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAAALRQAYEARTT 567

Query: 230 LIKLQKDVI 238
           ++++  + I
Sbjct: 568 ILEVINECI 576



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 72/247 (29%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   D+ +L      ++ +E    +             G
Sbjct: 21  RVLRFETGRLAQQADGAVAAYLDD-DSMILSTTTAGSSPKENFDFFPLTVDVEEKMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     I  D  
Sbjct: 80  KIP---GSFFRRE---GRPSNEAILACRIIDRPLRPLFPHTLRNEVQVVETVLSISPDDS 133

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  +                     +G V+ +   ++    +    + E   
Sbjct: 134 YDMIAMNAASAS-------------TMISGLPFEGPVSGVRLALIDDQWVAFPRWSERER 180

Query: 185 IDVDANFVM----TDSGHIVEVQGSA---------ERATFSQDHFFAM--LNLAKDRIAD 229
              +              I  ++  A         +      D       L  AK  I  
Sbjct: 181 AVFELVVAGRVLDNGDVAIAMIEAGAGKNAWKLIYDEGMTKPDEVVVAGGLEAAKPFIKT 240

Query: 230 LIKLQKD 236
           + + Q +
Sbjct: 241 ICEAQNE 247


>gi|229490937|ref|ZP_04384772.1| polyribonucleotide nucleotidyltransferase [Rhodococcus erythropolis
           SK121]
 gi|229322327|gb|EEN88113.1| polyribonucleotide nucleotidyltransferase [Rhodococcus erythropolis
           SK121]
          Length = 756

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 87/243 (35%), Gaps = 16/243 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    +   A GS L + G+T +L   T  + V M  +    G  T
Sbjct: 356 FRIDGRGVTDIRSLSAEVAIIPRAHGSALFERGETQIL-GVTTLDMVKMAQQVDSLGPET 414

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 415 TKRYMHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERALMPVLPSVEEFPYAIRQV 470

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            + + ++G T   ++  + +AL +    +        +     G V+    G      + 
Sbjct: 471 SEALSSNGSTSMGSVCASTLALLNAGVPLRAPVAGIAM-----GLVSDQVDGETRYVALT 525

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED+  D+D     T    +  +Q   +            L+ AKD    ++++  
Sbjct: 526 DILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALSQAKDARTTILEVMA 584

Query: 236 DVI 238
           + I
Sbjct: 585 EAI 587



 Score = 38.1 bits (88), Expect = 1.00,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 3/89 (3%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  +RE   GR    +    R+I R LR           Q+++    +         AI
Sbjct: 90  GSFFRRE---GRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLNPQDLYDVVAI 146

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKG 159
             A  +               +++ ++  
Sbjct: 147 NAASASTQIAGLPFSGPVGGVRVALIVSD 175


>gi|116512733|ref|YP_811640.1| polynucleotide phosphorylase/polyadenylase [Lactococcus lactis
           subsp. cremoris SK11]
 gi|123320193|sp|Q02WZ5|PNP_LACLS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116108387|gb|ABJ73527.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Lactococcus lactis subsp. cremoris SK11]
          Length = 769

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 91/251 (36%), Gaps = 28/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA--EGSCLVKFGDTHLLTTATL----EEKVPMWIRNT 54
           +R  GR+ +++R +      +  +   G+ L   G T  L+T TL    E ++   + + 
Sbjct: 316 IRPDGRKIDEIRPLDAEIDFTPRSITHGTGLFTRGQTQALSTLTLAPMNEAQIIDGLNDE 375

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y     S G   +     G  G R      +  RAL  V+         I +
Sbjct: 376 YKKRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRL 431

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V++++G +  A+I    +AL                   +K  VA I+ G++     
Sbjct: 432 VAEVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTN 478

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G I  +Q   + +  + +     L  AK     +
Sbjct: 479 YTVLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKISGITPEILAEALAQAKTARFQI 537

Query: 231 IKLQKDVISNE 241
           + + +  I+  
Sbjct: 538 LDVIEATIAQP 548



 Score = 86.7 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 27/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWITAEYGMLPR 68
           R +++    V+K A G+ +V++GDT +LT AT+ +      +     +       G  P 
Sbjct: 13  RTLTVETGQVAKQANGAVVVRYGDTTVLTAATMGKMATGDFFPLQVNYEEKMYAAGKFP- 71

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KREA   R    +    R+I R +R +         Q+I        +   R A
Sbjct: 72  --GGFNKREA---RPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASGRVA 126

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +    + G  +++    E  +  ++
Sbjct: 127 AMFGSSLALA-------------ISDIPFDGPIAGVEVAYIDGKYVINPTVAEKESSSLE 173

Query: 189 ANFVMTDSGHIVEVQGSAERA-TFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            +     +G+I  +      A   S++     L    + + +LI+ Q ++++ 
Sbjct: 174 LSV----AGNINAINMVESGAKELSEEVMLGALLAGHNAVKELIEFQNEIVAK 222


>gi|307706124|ref|ZP_07642943.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis
           SK321]
 gi|307618524|gb|EFN97672.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis
           SK321]
          Length = 737

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|183603864|ref|ZP_02722383.2| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae MLV-016]
 gi|307067208|ref|YP_003876174.1| hypothetical protein SPAP_0579 [Streptococcus pneumoniae AP200]
 gi|183577765|gb|EDT98293.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae MLV-016]
 gi|306408745|gb|ADM84172.1| hypothetical protein SPAP_0579 [Streptococcus pneumoniae AP200]
          Length = 737

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 82.1 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELITFQEEIVA 222


>gi|149021550|ref|ZP_01835605.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP23-BS72]
 gi|147930246|gb|EDK81231.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           SP23-BS72]
          Length = 737

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKEPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|223945461|gb|ACN26814.1| unknown [Zea mays]
          Length = 306

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 96/265 (36%), Gaps = 43/265 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+  R+  + R  ++       A GS LV+ GDT +L +  LE   P        G ++
Sbjct: 39  VRIDARRLREARTTTVALGAVSSAHGSALVRVGDTAMLASVKLEVMSPS-AEYPDEGSVS 97

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD------LSALGSRQ--- 111
            E+ M P  +   + R        GRS E+  +I +AL  V+       L  L       
Sbjct: 98  VEFHMPPICSP--LVRP-------GRSAEVAPVISKALEDVLMSSRMLNLKDLCLITGKA 148

Query: 112 ---IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV------------ 156
                +D   + ADG    AA+  A  A       +    +  +L  V            
Sbjct: 149 SWLAYLDIYCLNADGSLFDAALISAVAAFTHLEIPLVSVGDDGKLFTVGGNDGKNKFELV 208

Query: 157 --------LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
                   L     +++C +  G  + D    E+S I+     V+  S  +V +Q     
Sbjct: 209 NREKRKLTLGDIPLSLTCALHKGSILTDPTSEEESIIETYVTVVVDSSDRLVSLQKVG-G 267

Query: 209 ATFSQDHFFAMLNLAKDRIADLIKL 233
              S       ++LAK+R   L ++
Sbjct: 268 TVTSMATIKECISLAKERRLRLREI 292


>gi|302528525|ref|ZP_07280867.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. AA4]
 gi|302437420|gb|EFL09236.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. AA4]
          Length = 749

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 93/251 (37%), Gaps = 32/251 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
           +R+ GR    +R++S    V   A GS L + G+T +L   TL     E+++      T 
Sbjct: 345 IRMDGRGLTDIRQLSAEVAVVPRAHGSALFERGETQILGITTLNMLRMEQQIDSLSPETT 404

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 405 KRYLH-HYNFPPFSTGETGRVGSPKRREIGHGM----LAERALVPVLPKRDEFPYAIRQV 459

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            + + ++G T   ++  + + L +                 LK  VA I+ G++      
Sbjct: 460 SEALGSNGSTSMGSVCASTMGLLNAGV-------------PLKAPVAGIAMGLVSDEVDG 506

Query: 174 ------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                 + D+   ED+  D+D     T    I  +Q   +      +   A L  AKD  
Sbjct: 507 ETRYVALTDILGAEDALGDMDFKVAGTKDI-ITALQLDTKLDGIPSEVLAAALKQAKDAR 565

Query: 228 ADLIKLQKDVI 238
             ++ +  + I
Sbjct: 566 LTILDVIAEAI 576



 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 74/245 (30%), Gaps = 32/245 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM--LPR 68
           R +      ++K A G+ +    +  +L +AT   K P    +     +  E  M    R
Sbjct: 24  RTVRFETGRLAKQAAGAVVAYLDEETMLLSATTASKHPKEHFDFFPLTVDVEERMYAAGR 83

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   +RE   GR    +    R+I R LR           Q++I    +  D      
Sbjct: 84  IPGAFFRRE---GRPSTDAILTARLIDRPLRPSFADGLRNEIQVVITVQSLNPDDPYDVL 140

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           AI  A  +                      G V  +   ++    +    + +      +
Sbjct: 141 AINAASASTQIAGL-------------PFSGPVGGVRVALIEDQWVAFPTWPQLEKATFN 187

Query: 189 ANF---VMTDSGHIVEVQGSAERATFS--------QDH--FFAMLNLAKDRIADLIKLQK 235
                 ++ D   I+ V+      T           D       L  AK  I  L + Q+
Sbjct: 188 MVVAGRIVGDDVAIMMVEAEGTEHTLDLIAAGGKAPDEAAVAEGLEAAKPFIRVLCEAQQ 247

Query: 236 DVISN 240
            + ++
Sbjct: 248 RLAAD 252


>gi|167519907|ref|XP_001744293.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777379|gb|EDQ90996.1| predicted protein [Monosiga brevicollis MX1]
          Length = 214

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 52/142 (36%), Gaps = 5/142 (3%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R+  + R ++L   V   A GSC ++ G T ++      E+       +  G +      
Sbjct: 15  REAGEPRSLALQTGVVSRAAGSCFLEMGRTKVMVACYGPEEAARAGTFSDMGVLECHITR 74

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
            P +   R   +     +G R     R +   ++  + L       I +   +++ DGG 
Sbjct: 75  APFAEQKRATLQETDADRGLR-----RDLDAMIKPAILLEKYPKSTIALQATILEDDGGV 129

Query: 126 RTAAITGAWVALHDCLQHMEDC 147
             A +  +  AL +    + D 
Sbjct: 130 LPALVMASSTALVEAGIELRDI 151


>gi|226306131|ref|YP_002766091.1| guanosine pentaphosphate synthetase/polynucleotide phosphorylase
           [Rhodococcus erythropolis PR4]
 gi|257096704|sp|C0ZYB7|PNP_RHOE4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226185248|dbj|BAH33352.1| guanosine pentaphosphate synthetase/polynucleotide phosphorylase
           [Rhodococcus erythropolis PR4]
          Length = 756

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 87/243 (35%), Gaps = 16/243 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    +   A GS L + G+T +L   T  + V M  +    G  T
Sbjct: 356 FRIDGRGVTDIRSLSAEVAIIPRAHGSALFERGETQIL-GVTTLDMVKMAQQVDSLGPET 414

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 415 TKRYMHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERALMPVLPSVEEFPYAIRQV 470

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            + + ++G T   ++  + +AL +    +        +     G V+    G      + 
Sbjct: 471 SEALSSNGSTSMGSVCASTLALLNAGVPLRAPVAGIAM-----GLVSDQVDGETRYVALT 525

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED+  D+D     T    +  +Q   +            L+ AKD    ++++  
Sbjct: 526 DILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALSQAKDARTTILEVMA 584

Query: 236 DVI 238
           + I
Sbjct: 585 EAI 587



 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 3/90 (3%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  +RE   GR    +    R+I R LR           Q+++    +         AI
Sbjct: 90  GSFFRRE---GRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLNPQDLYDVVAI 146

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160
             A  +               +++ ++   
Sbjct: 147 NAASASTQIAGLPFSGPVGGVRVALIVSED 176


>gi|301799640|emb|CBW32198.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           OXC141]
          Length = 737

 Score = 94.0 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|124360770|gb|ABD33427.2| Peptidase S8 and S53, subtilisin, kexin, sedolisin; 3
           exoribonuclease [Medicago truncatula]
          Length = 241

 Score = 94.0 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 62/195 (31%), Gaps = 27/195 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R ++ +  V   A GS     G+T +L      +       N +   I  
Sbjct: 5   RPDGRSPNQLRPLACSHSVLHRAHGSATWAQGETKVLAAVYGPKAGTKKNENPEKASIEV 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            +                +G  G   +E + ++ + L S+   +   +    +   V+  
Sbjct: 65  IWK-------------PNTGHVGQADREYEMILKKTLESICIRTIYPNTTTSVI--VVHD 109

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DG     AI  A  AL D    +   +            VA           I+D    E
Sbjct: 110 DGALLPCAINAACAALVDAGIPLRHLA------------VAICCSVTDNNSIILDPSKKE 157

Query: 182 DSTIDVDANFVMTDS 196
           +      A  V  ++
Sbjct: 158 EEKSKAFAYLVFPNT 172


>gi|115610673|ref|XP_788833.2| PREDICTED: similar to SCL75 protein [Strongylocentrotus purpuratus]
 gi|115958655|ref|XP_001193817.1| PREDICTED: similar to SCL75 protein [Strongylocentrotus purpuratus]
          Length = 437

 Score = 94.0 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 91/260 (35%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R   +   V +   G C+V  GDT +L   + E   P   R    G +  
Sbjct: 21  RLDGRQPYDYRRTKIEFGVER---GCCMVHMGDTRILAQVSCEVVEPKENR-PNEGQLFV 76

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQ--II 113
              + P ++         +GR      E+ R++ R ++    VD+ +L    G +   I 
Sbjct: 77  NLELSPMASTT-----FEAGRLSDYGIELNRLLERTVKDSRAVDVESLCIVAGEKVWKIR 131

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  V+  DG    +A   A  AL    +           +    ++  +   +      
Sbjct: 132 LDVHVLNHDGNILDSACLAALAALSHFRRPDVTVIGESVTIHSPQDRDPVPLNVHHIPVC 191

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           ++          +VD    E+  ++      M     +  +Q +       ++       
Sbjct: 192 VTFAFYHKGKRLLVDPTEKEEKVMEGTMVVGMNVHRELCTMQVTGSMLIL-KEQIIRCCQ 250

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +   ++++L +L K  +  +
Sbjct: 251 IGVVKVSELTELIKLALEKD 270


>gi|54400656|ref|NP_001006077.1| exosome complex exonuclease RRP45 [Danio rerio]
 gi|53734430|gb|AAH83243.1| Exosome component 9 [Danio rerio]
 gi|182889156|gb|AAI64713.1| Exosc9 protein [Danio rerio]
 gi|220678245|emb|CAX14657.1| novel protein similar to vertebrate exosome component 9 (EXOSC9,
           zgc:101680) [Danio rerio]
          Length = 393

 Score = 94.0 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 92/260 (35%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L+  +  E VP        G +  
Sbjct: 23  RLDGRQTYDYRNIKISFG-TDY--GCCVVELGKTRVLSQVS-CELVPPKDSRPTEGIVFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              + P ++           RQ      + R + R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSPMASPA-----FEPNRQSELLVTLNRQLERCLRNSKCIDTESLCVVSGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVAL------------HDCLQHMEDCSNKFQLSQVLKGHV 161
           +D  V+  DG    AA   A  AL             D      +  +   LS       
Sbjct: 134 VDVHVLNHDGNLMDAASIAAISALSHFRRPDVAIQGRDVTVFGPEERDPIPLSIYHMPIC 193

Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
            + +  +   + +VD    E+   D      M     I  +Q S       ++       
Sbjct: 194 VSFAFFLQGSFLLVDPCEREERVKDGLLVIAMNKHREICSIQSSG-GIMLLKEQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  +++++ +L    + N+
Sbjct: 253 IASVKVSEITELINKALEND 272


>gi|332141240|ref|YP_004426978.1| Polynucleotide phosphorylase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551262|gb|AEA97980.1| Polynucleotide phosphorylase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 382

 Score = 94.0 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 88/239 (36%), Gaps = 26/239 (10%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI----RNTKHGWITAEYGML 66
           +R + +   +     GS L   G+T  +  ATL  +    +    +  +       Y   
Sbjct: 2   IRALDVATGILPRTHGSALFTRGETQAIMAATLGTERDAQMIDELQGKRDSRFMLHYNFP 61

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G      +   R+ G      R+  R +++V+         + +  ++ +++G + 
Sbjct: 62  PYCVGETGMIGSPKRREIGHG----RLAKRGIQAVMPSEEEFPYVVRVVSEITESNGSSS 117

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPIV-DLDYGED 182
            A++ G  +AL D                 +K  VA I+ G++     + ++ D+   ED
Sbjct: 118 MASVCGTSLALMDAGV-------------PIKASVAGIAMGLVKSDDNFVVLSDILGDED 164

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
              D+D     T  G I  +Q   +    +++     L  AK+    ++ +  + I   
Sbjct: 165 HLGDMDFKVAGTTDG-ITALQMDIKIEGITKEIMQIALKQAKEARLHILNVMDEAIGGH 222


>gi|307704339|ref|ZP_07641256.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis
           SK597]
 gi|307622099|gb|EFO01119.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis
           SK597]
          Length = 737

 Score = 94.0 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|255580609|ref|XP_002531128.1| exosome complex exonuclease rrp45, putative [Ricinus communis]
 gi|223529292|gb|EEF31262.1| exosome complex exonuclease rrp45, putative [Ricinus communis]
          Length = 463

 Score = 94.0 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 91/262 (34%), Gaps = 33/262 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR  ++ R++++        +GS  V+ G TH++   T +  V  +      G ++
Sbjct: 27  LRIDGRNSHEFRKLTIKFG---REDGSSEVQLGQTHVMGFVTSQL-VQPYRDRPNEGSLS 82

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQI 112
                 P +  +        GR G  + E+ R+I R LR    VD  +L          I
Sbjct: 83  IFSEFSPMADPS-----FEPGRPGESAVELGRIIDRGLRESRAVDTESLCVLAGKLVWAI 137

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN-------------KFQLSQVLKG 159
            ID  ++   G    AA   A  AL    +                    K  L  ++  
Sbjct: 138 RIDLHILDNGGNLVDAANIAALAALLTFRRPECTLGGEDGQQVIVHPPEVKEPLPLIVHH 197

Query: 160 HVAAISCGMLCGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
              A++          +VD  + E++ +       +  +G I  +Q +       Q    
Sbjct: 198 LPIAVTFAFFSSEHTMVVDPTHNEEAVMTGRMTVTVNANGDICSIQKAGGEGVM-QSRIM 256

Query: 218 AMLNLAKDRIADLIKLQKDVIS 239
             L +A      + K  KD + 
Sbjct: 257 HCLRVASRNAESITKKIKDAVE 278


>gi|187611307|sp|Q8DQT0|PNP_STRR6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187611312|sp|Q04LT4|PNP_STRP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 737

 Score = 94.0 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|225860589|ref|YP_002742098.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298230931|ref|ZP_06964612.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298254667|ref|ZP_06978253.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|254782741|sp|C1CQ76|PNP_STRZT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|225728353|gb|ACO24204.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|327390327|gb|EGE88668.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           GA04375]
          Length = 737

 Score = 94.0 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|330997766|ref|ZP_08321601.1| polyribonucleotide nucleotidyltransferase [Paraprevotella
           xylaniphila YIT 11841]
 gi|329569654|gb|EGG51419.1| polyribonucleotide nucleotidyltransferase [Paraprevotella
           xylaniphila YIT 11841]
          Length = 742

 Score = 94.0 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 84/240 (35%), Gaps = 30/240 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           RL GR   ++R I           GS +   G+T  L+T T    L+EK+   +      
Sbjct: 325 RLDGRATTEIRPIWCEVSPLPGPHGSAIFTRGETQSLSTCTLGTKLDEKIIDEVLEQSKM 384

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  R L+  +         + +  D
Sbjct: 385 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRGLKGQIPEDF--PYTVRVVSD 438

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D    M             K  V+ I+ G++        
Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVSGIAMGLIKNPGEEKY 485

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G +   Q   +    S +     L  AK     ++
Sbjct: 486 AVLSDILGDEDHLGDMDFKTTGTIDG-LTATQMDIKCDGLSYEILEKALMQAKAGREHIL 544



 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 91/241 (37%), Gaps = 37/241 (15%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHG 57
             GR       IS+      K A+G+ ++  G+T LL T    ++ VP         ++ 
Sbjct: 11  PDGRT------ISIETGKLAKQADGAVMLTMGNTMLLATVCAAKDAVPGTDFMPLQVEYR 64

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
              A  G  P   G   KRE   G+         R++ RALR +   +        +  +
Sbjct: 65  EKFAAAGRFP---GGFTKRE---GKASDYEILTCRLVDRALRPLFPSNYHAE----VYVN 114

Query: 118 VI--QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
           VI   ADG           V + D L      +         +G ++ +    + G  +V
Sbjct: 115 VILYSADG-----------VDMPDALAGFAASAALAVSDIPFEGPISEVRVARINGEYVV 163

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           +  + +    D+D     T+  +I+ V+G  E    ++      L +A + I  + +LQK
Sbjct: 164 NPTFAQLEQADMDIMVGATEE-NIMMVEG--EMKEVTEQDLLNALKVAHEAIKPMCRLQK 220

Query: 236 D 236
           +
Sbjct: 221 E 221


>gi|307708303|ref|ZP_07644770.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis NCTC
           12261]
 gi|307615749|gb|EFN94955.1| polyribonucleotide nucleotidyltransferase [Streptococcus mitis NCTC
           12261]
          Length = 737

 Score = 94.0 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|194398464|ref|YP_002037251.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae G54]
 gi|226702694|sp|B5E2A0|PNP_STRP4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|257096717|sp|B2IMQ9|PNP_STRPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|194358131|gb|ACF56579.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           G54]
 gi|301801461|emb|CBW34153.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           INV200]
          Length = 737

 Score = 94.0 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|156086228|ref|XP_001610523.1| exosome complex exonuclease rrp41 [Babesia bovis T2Bo]
 gi|154797776|gb|EDO06955.1| exosome complex exonuclease rrp41, putative [Babesia bovis]
          Length = 259

 Score = 94.0 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 85/252 (33%), Gaps = 35/252 (13%)

Query: 1   MRLSGRQENQMREISL----TRRV-SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK 55
           +R+ GR+ +++R I +       V     +G   V  G T +         +        
Sbjct: 12  LRIDGRRPSEVRHIDILCGPECGVDIINYDGVAQVTQGLTKVQAFINGPTDIGRSKTKEG 71

Query: 56  H------GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS 109
                    I  E  +         +R+++  R    + EI R +      V+      +
Sbjct: 72  FETADSPVEIRCEVCIPS-------ERKSMGHRNNDATVEISRAVVGTFEPVIISHLYKN 124

Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             I I  +V++ADGG +   I    +AL D    M+D              + A +  ML
Sbjct: 125 STIHIFVNVLEADGGVKATVINAVLIALIDAGIAMKDI-------------IVACTAVML 171

Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
               ++D +  E +   ++    ++ S   ++ +   ++   +    +  ++  A     
Sbjct: 172 NETLLIDPNQLEINASIMELTLALSVSNEELIHIDLRSK---YPIKSYAEIIEKAIKGSE 228

Query: 229 DLIKLQKDVISN 240
               L K  +  
Sbjct: 229 RFAALAKAKLKG 240


>gi|300176535|emb|CBK24200.2| unnamed protein product [Blastocystis hominis]
          Length = 600

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 16/166 (9%)

Query: 16  LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           ++  V K A GS  V+ G+  ++ +          + +   G +  ++   P +     K
Sbjct: 7   ISTGVVKNASGSAYVELGNMKIMCSVQGPRDSFRSVDSQDKGALYCDFKYAPFA----QK 62

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
                      ++ +  ++ + L + VDL A     + +   V++ DG     ++  A +
Sbjct: 63  DVYQPNLLNRETKSMSLLLEKILSTSVDLEAFPKAVVELYIMVLEVDGDPLGLSLMCASL 122

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           AL D   ++                       M     IV+    E
Sbjct: 123 ALTDAGLNLFGLLG------------CCCVSVMENNQMIVNPTSDE 156


>gi|307126791|ref|YP_003878822.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           670-6B]
 gi|306483853|gb|ADM90722.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           670-6B]
 gi|332077021|gb|EGI87483.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           GA17545]
          Length = 737

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 81.7 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    +  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-VNMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|237650139|ref|ZP_04524391.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae CCRI 1974]
 gi|237821670|ref|ZP_04597515.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae CCRI 1974M2]
          Length = 737

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|331698425|ref|YP_004334664.1| polyribonucleotide nucleotidyltransferase [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953114|gb|AEA26811.1| Polyribonucleotide nucleotidyltransferase [Pseudonocardia
           dioxanivorans CB1190]
          Length = 750

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 93/244 (38%), Gaps = 18/244 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R +S    V   A GS L + G+T ++   T      +E+++      T
Sbjct: 341 VRIDGRGLTDIRPLSAEVEVVPRAHGSALFERGETQIM-GVTTLNMLRMEQQIDSLGPET 399

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              ++   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 400 HKRYLH-HYNFPPYSTGETGRVGSPKRREIGHG----ALAERALLPVLPTREEFPYAIRQ 454

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             + + ++G T   ++  + ++L +    ++       +     G V+    G      +
Sbjct: 455 VSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAM-----GLVSDEVDGKATYVAL 509

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED+  D+D     T    +  +Q   +      +   A LN AKD    ++++ 
Sbjct: 510 TDILGAEDAFGDMDFKVAGTSDF-VTALQLDTKLDGIPSEVLAAALNQAKDARLTILEVL 568

Query: 235 KDVI 238
            + I
Sbjct: 569 GEAI 572



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 75/241 (31%), Gaps = 32/241 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R I      +++ A GS +    D  +L +AT   K P    +     +  E  M     
Sbjct: 24  RTIRFETGRLARQAAGSVVAYLDDETMLLSATTASKQPKEQFDFFPLTVDVEERMYAIGK 83

Query: 71  --GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR G  +    R+I R LR           QI++    +      R  
Sbjct: 84  IPGSFFRRE---GRPGTDAILTCRLIDRPLRPSFVDGLRNEIQIVVTVLSLD----PRD- 135

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
                    +D L      ++         G +  +   ++ G  +    Y +      D
Sbjct: 136 --------PYDALAINAASASTQLAGLPFSGPIGGVRVALIDGQWVAFPQYEDLQRAVFD 187

Query: 189 ANF---VMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQK 235
                 ++ D   I+ V+  A   T           ++      L  AK  I  L   Q+
Sbjct: 188 MVVAGRIVGDDVAIMMVEAEATTETVELVAGGAQAPTEQVVAQGLEAAKPFIRSLCVAQQ 247

Query: 236 D 236
            
Sbjct: 248 Q 248


>gi|183603103|ref|ZP_02712475.2| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae SP195]
 gi|183603451|ref|ZP_02716891.2| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           CDC3059-06]
 gi|221231415|ref|YP_002510567.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           ATCC 700669]
 gi|254782738|sp|B8ZMC0|PNP_STRPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|183572923|gb|EDT93451.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae SP195]
 gi|183577007|gb|EDT97535.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           CDC3059-06]
 gi|220673875|emb|CAR68380.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           ATCC 700669]
 gi|332074399|gb|EGI84875.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           GA17570]
          Length = 737

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MTGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|15900497|ref|NP_345101.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae TIGR4]
 gi|81532195|sp|Q97S28|PNP_STRPN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|14972063|gb|AAK74741.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           TIGR4]
          Length = 737

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|225570607|ref|ZP_03779632.1| hypothetical protein CLOHYLEM_06709 [Clostridium hylemonae DSM
           15053]
 gi|225160620|gb|EEG73239.1| hypothetical protein CLOHYLEM_06709 [Clostridium hylemonae DSM
           15053]
          Length = 695

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 25/234 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
           R  GR  +Q+R ++    +     GS +   G T  + T T          +        
Sbjct: 312 RPDGRAVDQIRALAAEIDLIPRVHGSAMFTRGQTQ-ICTVTTLAPLAEAQRLDGLDEAET 370

Query: 60  TAEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  Y M   +  +    E    R  G R      +  RAL  V+         I    + 
Sbjct: 371 SKRY-MHHYNFPSYSVGETRPSRGPGRREIGHGALAERALIPVLPSETEFPYAIRTVSET 429

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY------ 172
            +++G T  A+I  + ++L                   +K  VA IS G++ G       
Sbjct: 430 FESNGSTSQASICASSMSLMAAGV-------------PIKAAVAGISAGLVTGDTDDDYL 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED   D+D     T  G I  +Q   +    ++      +   K  
Sbjct: 477 VLTDIQGLEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAIATTKKA 529



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 78/226 (34%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R++ +    V+K A G+ L+ +GDT +L TAT      E +  +  + ++       G +
Sbjct: 12  RKLRVDVDRVAKQANGAVLMHYGDTTVLCTATASEKPREGIDFFPLSVEYNERLYSVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 72  P---GGFNKRE---GKASENAVLTCRVIDRPMRPLFPKDYRNDVTLENLVMSVDQDCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA +A                      G ++A   G++    + +    +    D
Sbjct: 126 LTAMLGAAIA-------------TTISDIPFDGPISATQVGLVDNTLVFNPTAAQKEASD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +D     +  A +    +I 
Sbjct: 173 MALTVASTRD-KVIMIEAGANEVP--EDKMIEAIFAAHELNQKVIA 215


>gi|172079486|ref|ZP_02707776.2| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           CDC1873-00]
 gi|172043773|gb|EDT51819.1| polyribonucleotide nucleotidyltransferase
           (Polynucleotidephosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15) [Streptococcus pneumoniae
           CDC1873-00]
 gi|301793785|emb|CBW36174.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           INV104]
 gi|332203753|gb|EGJ17820.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           GA47368]
 gi|332204610|gb|EGJ18675.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           GA47901]
          Length = 737

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 88/232 (37%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G +    I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDDQIIINPSQEQAEQSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|281492468|ref|YP_003354448.1| polyribonucleotide nucleotidyltransferase [Lactococcus lactis
           subsp. lactis KF147]
 gi|281376132|gb|ADA65623.1| Polyribonucleotide nucleotidyltransferase [Lactococcus lactis
           subsp. lactis KF147]
          Length = 773

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 90/251 (35%), Gaps = 28/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKY--AEGSCLVKFGDTHLLTTATL----EEKVPMWIRNT 54
           +R  GR+ +++R +      +      G+ L   G T  L+T TL    E ++   + + 
Sbjct: 316 IRPDGRKIDEIRPLDAEIDFTPRNITHGTGLFTRGQTQALSTLTLAPMNEAQIIDGLNDE 375

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y     S G   +     G  G R      +  RAL  V+         I +
Sbjct: 376 YKKRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRL 431

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V++++G +  A+I    +AL                   +K  VA I+ G++     
Sbjct: 432 VAEVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTN 478

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G I  +Q   + +  + +     L  AK     +
Sbjct: 479 YTVLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKISGITPEILAEALAQAKTARFQI 537

Query: 231 IKLQKDVISNE 241
           + + +  I+  
Sbjct: 538 LDVIEATIAQP 548



 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 89/233 (38%), Gaps = 27/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWITAEYGMLPR 68
           R +++    V+K A G+ +V++GDT +LT AT+ +      +     +       G  P 
Sbjct: 13  RTLTVETGQVAKQANGAVVVRYGDTTVLTAATMGKMATGDFFPLQVNYEEKMYAAGKFP- 71

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KREA   R    +    R+I R +R +         Q+I        +   R A
Sbjct: 72  --GGFNKREA---RPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASGRVA 126

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +    + G  I++    E     ++
Sbjct: 127 AMFGSSLALA-------------ISDIPFDGPIAGVEVAYIDGEYIINPTVAEKEASSLE 173

Query: 189 ANFVMTDSGHIVEVQGSAERA-TFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            +     +G+I  +      A   S++     L    + + +LI+ Q ++++ 
Sbjct: 174 LSV----AGNINAINMVESGAKELSEEVMLGALLAGHNAVKELIEFQNEIVAK 222


>gi|169833588|ref|YP_001694072.1| polynucleotide phosphorylase/polyadenylase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|226703873|sp|B1IAA9|PNP_STRPI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|168996090|gb|ACA36702.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 737

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|331082947|ref|ZP_08332067.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330399942|gb|EGG79600.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 697

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 76/228 (33%), Gaps = 25/228 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
           R  GR   ++R ++    +     GS +   G T  + T T          +       +
Sbjct: 312 RPDGRAITEIRPLAAETDIIPRVHGSAMFTRGQTQ-ICTITTLAPLSEAQRLDGLDEFEV 370

Query: 60  TAEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  Y M   +  +    E    R  G R      +  RAL  V+         I    + 
Sbjct: 371 SKRY-MHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVIPGVEEFPYAIRTVSET 429

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY------ 172
            +++G T  A+I  + ++L                   +K  VA ISCG++ G       
Sbjct: 430 FESNGSTSQASICASTMSLMAAGV-------------PIKKPVAGISCGLVTGETDDDYL 476

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
            + D+   ED   D+D     T  G I  +Q   +    ++      +
Sbjct: 477 VLTDIQGLEDFFGDMDFKVAGTHDG-ITAIQMDIKIHGLTRQIIEEAI 523



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 85/234 (36%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+K A G+ L+++GDT +L+TAT      E +  +  + ++       G +
Sbjct: 12  RTLTVDIGRVAKQANGAALMRYGDTTVLSTATASDKPREGIDFFPLSVEYEEKMYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      + ++    
Sbjct: 72  P---GGFNKRE---GKASEHAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMAVDSECNPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  AA   GM+ G  +V+    +    D
Sbjct: 126 VVAMLGSSIA-------------TCISDIPFDGPCAATQIGMVNGELVVNPSLAQKEISD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    ++ ++  A      +      +  A +   ++I     +++ 
Sbjct: 173 LQLTVASTRE-KVIMIEAGANEIP--EAKMIEAIFKAHEVNQEIIAFIDKIVAE 223


>gi|125624816|ref|YP_001033299.1| polynucleotide phosphorylase/polyadenylase [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|187610279|sp|A2RMS5|PNP_LACLM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|124493624|emb|CAL98611.1| polyribonucleotide nucleotidyltransferase [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300071615|gb|ADJ61015.1| polynucleotide phosphorylase/polyadenylase [Lactococcus lactis
           subsp. cremoris NZ9000]
          Length = 766

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 91/251 (36%), Gaps = 28/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA--EGSCLVKFGDTHLLTTATL----EEKVPMWIRNT 54
           +R  GR+ +++R +      +  +   G+ L   G T  L+T TL    E ++   + + 
Sbjct: 316 IRPDGRKIDEIRPLDAEIDFTPRSITHGTGLFTRGQTQALSTLTLAPMNEAQIIDGLNDE 375

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y     S G   +     G  G R      +  RAL  V+         I +
Sbjct: 376 YKKRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRL 431

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V++++G +  A+I    +AL                   +K  VA I+ G++     
Sbjct: 432 VAEVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTN 478

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G I  +Q   + +  + +     L  AK     +
Sbjct: 479 YTVLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKISGITPEILAEALAQAKTARFQI 537

Query: 231 IKLQKDVISNE 241
           + + +  I+  
Sbjct: 538 LDVIEATIAQP 548



 Score = 86.7 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 89/233 (38%), Gaps = 27/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWITAEYGMLPR 68
           R +++    V+K A G+ +V++GDT +LT AT+ +      +     +       G  P 
Sbjct: 13  RTLTVETGQVAKQANGAVVVRYGDTTVLTAATMGKMATGDFFPLQVNYEEKMYAAGKFP- 71

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KREA   R    +    R+I R +R +         Q+I        +   R A
Sbjct: 72  --GGFNKREA---RPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASGRVA 126

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +    + G  I++    E     ++
Sbjct: 127 AMFGSSLALA-------------ISDIPFDGPIAGVEVAYIDGKYIINPTVAEKEASSLE 173

Query: 189 ANFVMTDSGHIVEVQGSAERA-TFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            +     +G+I  +      A   S++     L    + + +LI+ Q ++++ 
Sbjct: 174 LSV----AGNINAINMVESGAKELSEEVMLGALLAGHNAVKELIEFQNEIVAK 222


>gi|326493068|dbj|BAJ84995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 337

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 97/263 (36%), Gaps = 38/263 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMWIRNTKHGW 58
           +R+ GR+    R++ +        +GS  V+ G+T ++   TA L   V  +      G 
Sbjct: 24  LRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMGYVTAQL---VQPYKDRPNEGT 77

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSR------ 110
           +       P +           GR G  + E+ R+I R LR    VD+ +L         
Sbjct: 78  LAIFTEFSPMADPA-----FEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAGKHVW 132

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQH-------------MEDCSNKFQLSQVL 157
            + +D  ++  +G    AA   A  AL    +              + D   +  L   +
Sbjct: 133 SVRVDLHILDNEGNLIDAANIAALAALSTFRRPECTVGGDDGQQVTVHDSEVRDPLPLTI 192

Query: 158 KGHVAAISCGMLC--GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
                A++          ++D  Y E++ +       +  +G +  +Q +      S   
Sbjct: 193 HHLPIAVTFAYFGDGNIMVIDPTYKEEAVMGGRMTATINSNGDVCAIQKAGGEGVMS-SV 251

Query: 216 FFAMLNLAKDRIADL-IKLQKDV 237
               L +A  ++AD+  K++++V
Sbjct: 252 IMQCLRIASVKVADIPSKIKREV 274


>gi|326407346|gb|ADZ64417.1| polyribonucleotide nucleotidyltransferase [Lactococcus lactis
           subsp. lactis CV56]
          Length = 773

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 90/251 (35%), Gaps = 28/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKY--AEGSCLVKFGDTHLLTTATL----EEKVPMWIRNT 54
           +R  GR+ +++R +      +      G+ L   G T  L+T TL    E ++   + + 
Sbjct: 316 IRPDGRKIDEIRPLDAEIDFTPRNITHGTGLFTRGQTQALSTLTLAPMNEAQIIDGLNDE 375

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y     S G   +     G  G R      +  RAL  V+         I +
Sbjct: 376 YKKRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRL 431

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V++++G +  A+I    +AL                   +K  VA I+ G++     
Sbjct: 432 VAEVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTN 478

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G I  +Q   + +  + +     L  AK     +
Sbjct: 479 YTVLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKISGITPEILAEALAQAKTARFQI 537

Query: 231 IKLQKDVISNE 241
           + + +  I+  
Sbjct: 538 LDVIEATIAQP 548



 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 88/233 (37%), Gaps = 27/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWITAEYGMLPR 68
           R +++    V+K A G+ +V++GDT +LT AT+ +      +     +       G  P 
Sbjct: 13  RTLTVETGQVAKQANGAVVVRYGDTTVLTAATMGKMATGEFFPLQVNYEEKMYAAGKFP- 71

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KREA   R    +    R+I R +R +         Q+I        +   R A
Sbjct: 72  --GGFNKREA---RPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASGRVA 126

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                       +A +    + G  I++    E     ++
Sbjct: 127 AMFGSSLALA-------------ISDIPFDRPIAGVEVAYIDGEYIINPTVAEKEASSLE 173

Query: 189 ANFVMTDSGHIVEVQGSAERA-TFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            +     +G+I  +      A   S++     L    + + +LI+ Q ++++ 
Sbjct: 174 LSV----AGNINAINMVESGAKELSEEVMLGALLAGHNAVKELIEFQNEIVAK 222


>gi|227872010|ref|ZP_03990395.1| polyribonucleotide nucleotidyltransferase [Oribacterium sinus
           F0268]
 gi|227842153|gb|EEJ52398.1| polyribonucleotide nucleotidyltransferase [Oribacterium sinus
           F0268]
          Length = 695

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 88/252 (34%), Gaps = 30/252 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHL-----LTTATLEEKVPMWIRNTKH 56
           R  GR  +++R++     +     GS + K G T +     L   +  +KV         
Sbjct: 306 RPDGRAIDEIRKLEAEVDLLPRVHGSAMFKRGQTQIMNITTLAPLSEVQKVEGLNEFETE 365

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y     S G        S   G R      +  +AL  V+         I    
Sbjct: 366 KRYLHQYNFPGYSVGEAK----ASRGPGRREIGHGALAEKALIPVLPSVEEFPYAIRSVS 421

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + ++++G T  A+   + ++L                   +K  VA ISCG++ G     
Sbjct: 422 ETMESNGSTSMASTCASCMSLMAAGV-------------PIKKPVAGISCGLVTGDSDDE 468

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T+ G I  +Q   +    ++      +  A++    +
Sbjct: 469 YLVLTDIQGLEDFFGDMDFKVTGTEDG-ITAIQMDIKIHGLTRPIVEEAIRRAREARLFI 527

Query: 231 IK-LQKDVISNE 241
           +  + K+ I+  
Sbjct: 528 MNGVMKEAIAEP 539



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 77/225 (34%), Gaps = 27/225 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTAT--LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V   + G+ L+ +GDT +L   TA+    + +  +  + ++       G  
Sbjct: 6   RTLTVDVDRVCAQSNGAALMHYGDTTVLSTCTASAKPRDGIDFFPLSVEYEEKMYSVGKF 65

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   GR    +    R+I R +R +          +      +  D    
Sbjct: 66  P---GGFKKRE---GRASDNAILTARVIDRPMRPLFPKDYRNDVLLNNLVLSVDQDASPE 119

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ ++                      G  A    GM+ G  +V+   GE +  D
Sbjct: 120 LLAMLGSSLS-------------TCLSDVPFDGPCATTQIGMVGGEFVVNPGNGEKAVSD 166

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           +      T    ++ ++  A      +      + LA D    +I
Sbjct: 167 LLLTVASTKE-KVIMIEAGANE--LPEAKMIEAIYLAHDVNQQII 208


>gi|319441544|ref|ZP_07990700.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           variabile DSM 44702]
          Length = 762

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 94/254 (37%), Gaps = 32/254 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R++ +   +   A GS L + G+T +L   T  + + M  +    G +T
Sbjct: 378 FRIDGRDTTAIRDLGVMIDLVPRAHGSALFERGETQIL-GVTTLDMLKMEQQIDSLGPVT 436

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +      Y   P STG   +  +   R+ G       +  RAL  VV    +    I   
Sbjct: 437 SKRYIHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERALLPVVPSREVFPYTIRQV 492

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            + + ++G T   ++  + +++++                 LK  VA I+ G++ G    
Sbjct: 493 SEALGSNGSTSMGSVCASTLSMYNAGV-------------PLKAPVAGIAMGLVTGEVDG 539

Query: 174 ------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                 + D+   ED+  D+D     T    I  +Q   +            L+ A+   
Sbjct: 540 KDTYVTLTDILGAEDAFGDMDFKVAGTADF-ITALQLDTKVDGIPAKVLAEALSQARGAR 598

Query: 228 ADLIKLQKDVISNE 241
            +++    + I   
Sbjct: 599 LEILSTMAEAIEGP 612



 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 53/168 (31%), Gaps = 19/168 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM--LPR 68
           R ++    +  + A+GS      D  +L + T   K P    +     +  E  M    R
Sbjct: 41  RTLTFETGLLARQADGSVTAYLDDDTMLLSTTTASKHPRENLDFFPLTVDVEERMYAAGR 100

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR G  +    R+I R LR           Q+++    +  +      
Sbjct: 101 IPGSFFRRE---GRPGTEAILACRLIDRPLRPTFAKGLRNEVQVVVTVLSMDPEDMYDVV 157

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           AI  A  +                    + G V  +   ++      D
Sbjct: 158 AINAASASTQLSGL-------------PVSGPVGGVRMALVVDEAHAD 192


>gi|15673837|ref|NP_268012.1| polynucleotide phosphorylase/polyadenylase [Lactococcus lactis
           subsp. lactis Il1403]
 gi|81537531|sp|Q9CEI6|PNP_LACLA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|12724886|gb|AAK05953.1|AE006415_8 polyribonucleotide nucleotidyltransferase [Lactococcus lactis
           subsp. lactis Il1403]
          Length = 773

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 90/251 (35%), Gaps = 28/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKY--AEGSCLVKFGDTHLLTTATL----EEKVPMWIRNT 54
           +R  GR+ +++R +      +      G+ L   G T  L+T TL    E ++   + + 
Sbjct: 316 IRPDGRKIDEIRPLDAEIDFTPRNITHGTGLFTRGQTQALSTLTLAPMNEAQIIDGLNDE 375

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y     S G   +     G  G R      +  RAL  V+         I +
Sbjct: 376 YKKRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALEQVLPSLEEFPYAIRL 431

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V++++G +  A+I    +AL                   +K  VA I+ G++     
Sbjct: 432 VAEVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTN 478

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G I  +Q   + +  + +     L  AK     +
Sbjct: 479 YTVLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKISGITPEILAEALAQAKTARFQI 537

Query: 231 IKLQKDVISNE 241
           + + +  I+  
Sbjct: 538 LDVIEATIAQP 548



 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 88/233 (37%), Gaps = 27/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWITAEYGMLPR 68
           R +++    V+K A G+ +V++GDT +LT AT+ +      +     +       G  P 
Sbjct: 13  RTLTVETGQVAKQANGAVVVRYGDTTVLTAATMGKMATGDFFPLQVNYEEKMYAAGKFP- 71

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KREA   R    +    R+I R +R +         Q+I        +   R A
Sbjct: 72  --GGFNKREA---RPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASGRVA 126

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                       +A +    + G  I++    E     ++
Sbjct: 127 AMFGSSLALA-------------ISDIPFDRPIAGVEVAYIDGEYIINPTVAEKEASSLE 173

Query: 189 ANFVMTDSGHIVEVQGSAERA-TFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            +     +G+I  +      A   S++     L    + + +LI+ Q ++++ 
Sbjct: 174 LSV----AGNINAINMVESGAKELSEEVMLGALLAGHNAVKELIEFQNEIVAK 222


>gi|322377809|ref|ZP_08052298.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. M334]
 gi|321281232|gb|EFX58243.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. M334]
          Length = 737

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|322388265|ref|ZP_08061869.1| polyribonucleotide nucleotidyltransferase [Streptococcus infantis
           ATCC 700779]
 gi|321140937|gb|EFX36438.1| polyribonucleotide nucleotidyltransferase [Streptococcus infantis
           ATCC 700779]
          Length = 757

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 334 VRPDGRKVDEIRPLDAVVDFVPRVHGSGLFTRGQTQALSILTLAPMGETQIIDGLDPEYK 393

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 394 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 449

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 450 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 496

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 497 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 555

Query: 233 LQKDVI 238
           + +  I
Sbjct: 556 VIEATI 561



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 90/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A G+ +V++G++ +LT A + +K      +     +       G  P
Sbjct: 30  RELIVETGQVAKQANGAVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 89

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 90  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 143

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +  +  +
Sbjct: 144 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGEIIINPTQEQAESSLL 190

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 191 ELTVAGTKHA-INMVESGAKE--LSEEIMLQALLKGHEAVKELIAFQEEIVA 239


>gi|24642649|ref|NP_573163.1| Rrp45 [Drosophila melanogaster]
 gi|19527801|gb|AAL90015.1| AT07738p [Drosophila melanogaster]
 gi|22832411|gb|AAF48665.2| Rrp45 [Drosophila melanogaster]
 gi|220949552|gb|ACL87319.1| Rrp45-PA [synthetic construct]
 gi|220958432|gb|ACL91759.1| Rrp45-PA [synthetic construct]
          Length = 412

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 86/259 (33%), Gaps = 32/259 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           RL GR+ N+ R++ LT       + GS  V  GDT +L   T  E  P  +     G I 
Sbjct: 29  RLDGRRSNESRDVELTFGK----DWGSVAVSMGDTKVLAQVT-CEMGPPALSRPNEGKIH 83

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------I 112
               +   +  +             RS ++  ++ R  RS   +DL +L          I
Sbjct: 84  LNVYLGGVAFLDEAHTT-----HDQRSLKLNSLLERTFRSSRSIDLESLCVAVEKHVWCI 138

Query: 113 IIDCDVIQADGGTRTAAITGAWVALH----------DCLQHMEDCSNKFQLSQVLKGHVA 162
            ++ +V+  DG    A+      AL           D    +     +  +  +   +  
Sbjct: 139 RVNVNVLNHDGNLYDASTIATLAALMHFRRPDVWYKDGELRIFKKKEREFIPLLFHHYPV 198

Query: 163 AISCGMLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +++  +      PI+D    E++  D            +  +       T ++       
Sbjct: 199 SVTYCVYKSSVQPILDPTLLEENAADSVIVLSFNSFQELCSLTAGGTAPTNARIIMQCAR 258

Query: 221 NLAKDRIADLIKLQKDVIS 239
           N A      L+   +  ++
Sbjct: 259 NAAVR-CKSLLNFVRKALA 276


>gi|309799898|ref|ZP_07694103.1| polyribonucleotide nucleotidyltransferase [Streptococcus infantis
           SK1302]
 gi|308116488|gb|EFO53959.1| polyribonucleotide nucleotidyltransferase [Streptococcus infantis
           SK1302]
          Length = 740

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSILTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 82.8 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|172040539|ref|YP_001800253.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           urealyticum DSM 7109]
 gi|257096683|sp|B1VDC1|PNP_CORU7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|171851843|emb|CAQ04819.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           urealyticum DSM 7109]
          Length = 765

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 97/247 (39%), Gaps = 24/247 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT-----TATLEEKVPMWIRNTK 55
            R+ GR    +R++ +  ++   A GS L + G+T +L      T  +E+ +      T 
Sbjct: 380 FRIDGRDHTSIRDLGIVVQLLPRAHGSALFERGETQILGVTTLDTLKMEQTIDSLGPETS 439

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I   Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 440 KRYIH-HYNFPPYSTGETGRVGSPKRREIGHG----ALAERALTPVLPSREEFPYTIRQV 494

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            + + ++G T   ++  + ++L++    ++           + G    +  G++ G    
Sbjct: 495 SEALGSNGSTSMGSVCASTLSLYNAGVPLKA---------PVAGIAMGLVSGLVDGKEKF 545

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED+  D+D     T   ++  +Q   +      +   + L  A+    +++
Sbjct: 546 VSLTDILGAEDAFGDMDFKVAGTSE-YVTALQLDTKLDGLPSEVLASALGQARSARLEIL 604

Query: 232 KLQKDVI 238
           +L +D I
Sbjct: 605 QLMEDAI 611



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 12/152 (7%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLL-----TTATLEEKVPMWIRNTKHGWITAEYGM 65
           R +     +  + A+G+      +  +L      + +  E +  +             G 
Sbjct: 46  RTLRFETGLLARQADGAVTAYLDEDTILLSTTTASRSPREGIDFFPLTVDVEERMYSAGR 105

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR G  +    R+I R LR           Q++I    I  +   
Sbjct: 106 IP---GSFFRRE---GRPGTDAILAARLIDRPLRPTFVKGLRNEVQVVITVMSIDPNEMY 159

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVL 157
              AI GA  +       +       +++ V+
Sbjct: 160 DVLAINGASASTQLSGLPVSSSVGGVRMALVV 191


>gi|302874669|ref|YP_003843302.1| polyribonucleotide nucleotidyltransferase [Clostridium
           cellulovorans 743B]
 gi|307690717|ref|ZP_07633163.1| polynucleotide phosphorylase/polyadenylase [Clostridium
           cellulovorans 743B]
 gi|302577526|gb|ADL51538.1| polyribonucleotide nucleotidyltransferase [Clostridium
           cellulovorans 743B]
          Length = 705

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 88/256 (34%), Gaps = 35/256 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           R  GR  +++R I     +     G+ L   G T +LT AT     + ++   +   +  
Sbjct: 312 RPDGRAFDEVRNIGCEVDLLPRTHGTGLFTRGLTQVLTVATLGAIGDVQIIDGLGEEESK 371

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     S G          R+ G       +  +AL  ++         I +  +
Sbjct: 372 RYMHHYNFPAYSVGEVKPLRGPGRREIGHG----ALAEKALVPLIPSEEEFPYTIRLVSE 427

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           V+ ++G T  A++ G+ +AL D                 +K   A I+ G++        
Sbjct: 428 VLSSNGSTSQASVCGSTLALLDAGV-------------PIKRPAAGIAMGLITNEDLTQE 474

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----- 226
             + D+   ED   D+D     T  G I  +Q   +    S       +  A+       
Sbjct: 475 GVLTDIQGIEDFFGDMDFKVAGTTKG-ITAIQVDTKIKGLSDYVIRTAIEDARKARLHIL 533

Query: 227 --IADLIKLQKDVISN 240
             I + I+  ++ +S 
Sbjct: 534 EKIDECIEKPREELSQ 549



 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 80/213 (37%), Gaps = 26/213 (12%)

Query: 29  LVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQG 84
           L+ +GDT ++  A       + +  +  + ++       G +P   G  +KRE   GR  
Sbjct: 30  LISYGDTVVMVNANASENPRDGIDFFPLSIEYEERFYSVGKIP---GGFIKRE---GRPS 83

Query: 85  GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM 144
            +S    R I R +R +         Q++     ++ D      A+ GA + L       
Sbjct: 84  EKSILNARAIDRPIRPLFPKGYRNDVQVVCTVLSVEQDNLPNILAMNGASLGL------- 136

Query: 145 EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
                    S      VA +S G++ G  +++    E     +D     T    ++ ++ 
Sbjct: 137 ------LLSSIPFVDPVATVSVGLIDGNFVLNPTVEERKLSTMDLTICATRE-RVMMIEA 189

Query: 205 SAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           S +     ++   + +N   ++   +IK Q++ 
Sbjct: 190 SGDEIP--EEVMISAINYGFEQCQPIIKFQEEA 220


>gi|308232239|ref|ZP_07664037.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu001]
 gi|308379315|ref|ZP_07668942.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu010]
 gi|308214573|gb|EFO73972.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu001]
 gi|308357442|gb|EFP46293.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu010]
          Length = 831

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 89/246 (36%), Gaps = 14/246 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    V   A GS L + G+T +L   T  + + M  +    G  T
Sbjct: 424 FRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQIL-GVTTLDMIKMAQQIDSLGPET 482

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +      Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 483 SKRYMHHYNFPPFSTGETGRVGSPKRREIGHG----ALAERALVPVLPSVEEFPYAIRQV 538

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG-HVAAISCGMLCGYPI 174
            + + ++G T   ++  + +AL +    ++       +  V     V     G++    +
Sbjct: 539 SEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDIQVEGAVDGVVERRFV 598

Query: 175 --VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
              D+   ED+  D+D     T    +  +Q   +            L  AKD    +++
Sbjct: 599 TLTDILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALEQAKDARLTILE 657

Query: 233 LQKDVI 238
           +  + I
Sbjct: 658 VMAEAI 663



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 70/244 (28%), Gaps = 38/244 (15%)

Query: 12  REISLTRRVSK-YAEGSCLVKFGDTHLLTTAT-----LEEKVPMWIRNTKHGWITAEYGM 65
           R I          A G+ +    D ++L +AT      +E    +             G 
Sbjct: 104 RTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHFDFFPLTVDVEERMYAAGR 163

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           QI++    +      
Sbjct: 164 IP---GSFFRRE---GRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVVTILSLD----- 212

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
                      L+D L      ++         G +  +   ++ G  +      +    
Sbjct: 213 --------PGDLYDVLAINAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERA 264

Query: 186 DVDANFVMT---DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
             D             I+ V+  A               ++    A L  AK  IA L  
Sbjct: 265 VFDMVVAGRIVEGDVAIMMVEAEATENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCT 324

Query: 233 LQKD 236
            Q++
Sbjct: 325 AQQE 328


>gi|227833344|ref|YP_002835051.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184330|ref|ZP_06043751.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           aurimucosum ATCC 700975]
 gi|257096677|sp|C3PH09|PNP_CORA7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|227454360|gb|ACP33113.1| polyribonucleotide nucleotidyltransferase [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 756

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 93/253 (36%), Gaps = 30/253 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
            R+ GR    +R++ +   +   A GS L + G+T +L   TL+    E+    +   + 
Sbjct: 371 FRIDGRGVTDIRDLGVEVDLIPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPVES 430

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 431 KRYMHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERALLPVIPSREDFPYAIRQVS 486

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
           + + ++G T   ++  + ++L++                 LK  VA I+ G++ G     
Sbjct: 487 EALGSNGSTSMGSVCASTLSLYNAGV-------------PLKAPVAGIAMGLVSGEVNGK 533

Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T    I  +Q   +            L  A+D  A
Sbjct: 534 EKFVALTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPSHVLADALEQARDARA 592

Query: 229 DLIKLQKDVISNE 241
            ++    +VI + 
Sbjct: 593 AILDTMSEVIESP 605



 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 75/254 (29%), Gaps = 52/254 (20%)

Query: 12  REISLTRR-VSKYAEGSC---LVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEY 63
           R I      +++ A GS    L +  DT LL+T T      E    +             
Sbjct: 39  RTIRFETGQLARQAGGSVTTYLDE--DTMLLSTTTASNQPREGFDFFPLTVDVEERMYAA 96

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           G +P   G+  +RE   GR    +    R+I R LR           Q+++    +  + 
Sbjct: 97  GKIP---GSFFRRE---GRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVVTVLSMDPEE 150

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML------CGYPIVDL 177
                AI GA  +                    + G V  +   ++       G  +   
Sbjct: 151 YYDVVAINGASASTQLSGL-------------PVSGPVGGVRMALIADDKHPKGQWVAFP 197

Query: 178 DYGEDSTIDVDANFVMT-------DSGHIVEVQGSA---------ERATFSQD-HFFAML 220
           +  +      +             D   I+ V+  A         E A   Q+      L
Sbjct: 198 NNEQHERALFEMVVAGRIVKKGRKDDVAIMMVEAGAGVNVAERIKEGAPAPQESTVAEGL 257

Query: 221 NLAKDRIADLIKLQ 234
             AK  I  L + Q
Sbjct: 258 EAAKPFIKSLCEAQ 271


>gi|224054532|ref|XP_002298307.1| predicted protein [Populus trichocarpa]
 gi|222845565|gb|EEE83112.1| predicted protein [Populus trichocarpa]
          Length = 382

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 91/266 (34%), Gaps = 39/266 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-IRNTKHGWI 59
           +R+ GR   + R+I++     + A GS  V+ G TH++   T +   P    RN     I
Sbjct: 27  LRIDGRNPLEYRKITIKFGR-RVAYGSSEVQLGQTHVMGFVTGQLVQPYQDRRNEGMLLI 85

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------ 111
             E+   P +  +        GR G  + E+ R++ R LR    VD  +L          
Sbjct: 86  FTEFS--PMADPS-----FEPGRPGESAVELGRIVDRGLRESRAVDTESLCVLSGKLVWA 138

Query: 112 IIIDCDVIQADGGT----------------RTAAITGAWVALHDCLQHMEDCSNKFQLSQ 155
           I ID  ++   G                  R     G        +   E+   +  L  
Sbjct: 139 IRIDLHILDNGGNLVDAANIAALAALLTFRRPECTLGGDDGQEVTVHPPEE---REPLPL 195

Query: 156 VLKGHVAAISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
           ++     AI+   L   G  +VD  + E++ +       +   G I  +Q +       Q
Sbjct: 196 IVHHLPIAITFAFLGSEGKMVVDPTHSEEAVMGGRMTVTVNAIGDICSIQKAG-GEGVPQ 254

Query: 214 DHFFAMLNLAKDRIADLIKLQKDVIS 239
                 L LA      + K   + + 
Sbjct: 255 SVIMHCLQLASMSAESITKKINNAVE 280


>gi|254282476|ref|ZP_04957444.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           NOR51-B]
 gi|219678679|gb|EED35028.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           NOR51-B]
          Length = 717

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 79/233 (33%), Gaps = 26/233 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I+    +     GS L   G+T  +   TL       I +   G    
Sbjct: 314 RIDGRDGRTVRPIACELDILSKVHGSALFTRGETQAIGAITLGSTRDAQIIDALEGERRD 373

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +    S R+ G      R+  R L +V+         I +  +
Sbjct: 374 PFMLHYNFPPYSVGEAGRIGFTSRREIGHG----RLARRGLAAVLPTEEEFPYTIRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++    + L                   LK  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCVGSLGLMAAGV-------------PLKAPVAGIAMGLVKEGNNFAV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           + D+   ED   D+D     T SG +  +Q   +    ++      L  A   
Sbjct: 477 LTDILGDEDHLGDMDFKVAGTASG-VTALQMDIKIEGINEQIMEIALEQALQA 528



 Score = 71.7 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 81/237 (34%), Gaps = 34/237 (14%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLP 67
           E++L    +++ A G+ +V  GDT +L T     ++      +     +   T   G +P
Sbjct: 14  EVTLETGRIARQASGAVMVTMGDTSVLCTVVAARSMRPGQDFFPLAVHYIEKTYSVGKIP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
              G   KREA   R   +     R+I R +R +     +   Q++  C V+ A      
Sbjct: 74  ---GGFFKREA---RPSEKETLTSRLIDRPIRPLFPNGFMNEVQVV--CTVMSAGPEIDP 125

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDST 184
              A+ G   AL                     G +     G       +++  Y    +
Sbjct: 126 DIPAMIGTSAALAISGA-------------PFNGPIGGARVGFTEAEGYLLNPTYSALKS 172

Query: 185 IDVDANFVMTDSGHI-VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             +D     T    + VE Q        ++D     +  A   +  +I    +++++
Sbjct: 173 SKLDMVVAGTKDAVLMVESQADQ----LTEDQMLGAVLFAHQEMQAVIHAINELVAD 225


>gi|257055504|ref|YP_003133336.1| polynucleotide phosphorylase/polyadenylase [Saccharomonospora
           viridis DSM 43017]
 gi|256585376|gb|ACU96509.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Saccharomonospora viridis DSM 43017]
          Length = 823

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 85/242 (35%), Gaps = 9/242 (3%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R+++    V   A GS L + G+T +L   TL     E+    +     
Sbjct: 351 VRIDGRGVTDIRQLAAEVSVVPRAHGSALFERGETQILGVTTLNMLRMEQQLDTLSPETT 410

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +      R+ G       +  RAL  VV         I    
Sbjct: 411 KRFLHHYNFPPYSTGETGRVGTPKRREIGHGM----LAERALVPVVPKREEFPYAIRQVS 466

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  + ++L +    ++       +  V            +    + D
Sbjct: 467 EALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLVSDEVENENGETEVRYVALTD 526

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    I  +Q   +      D   A L  A+D    ++ +  +
Sbjct: 527 ILGAEDAFGDMDFKVAGTREI-ITALQLDTKLDGIPSDVLAAALEQARDARLTILDVMAE 585

Query: 237 VI 238
            I
Sbjct: 586 AI 587



 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 73/247 (29%), Gaps = 41/247 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R +      +++ A GS +    D T +L+  T     +E+   +             G 
Sbjct: 27  RTVRFETGRLARQAAGSVVAYLDDETMVLSATTASKQPKEQFDFFPLTVDVEERMYAAGR 86

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P +     +RE   GR    +    R+I R LR           QI++    +  D   
Sbjct: 87  IPGA---FFRRE---GRPSTDAILTCRLIDRPLRPSFAEGLRNEIQIVVTVQSLHPDDPY 140

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G +  +  G++ G  +    + +    
Sbjct: 141 DVLAINAASASTQIAGL-------------PFSGPIGGVRLGLIDGEWVAFPTWSQLERA 187

Query: 186 DVDANFVM------TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIAD 229
             +            +   I+ V+      T           ++      L+ AK  I  
Sbjct: 188 TFNMVVAGRIVGDRPEDVAIMMVEAEGTENTLDLIANGATAPTEKTVAEGLDAAKPFIRV 247

Query: 230 LIKLQKD 236
           L + Q+ 
Sbjct: 248 LCEAQQR 254


>gi|322374185|ref|ZP_08048718.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. C150]
 gi|321276890|gb|EFX53962.1| polyribonucleotide nucleotidyltransferase [Streptococcus sp. C150]
          Length = 745

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 85/249 (34%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----H 56
           +R  GR+ +++R +           GS L   G T  L+  TL       + +       
Sbjct: 317 VRPDGRRVDEIRPLDAEIDFLPKVHGSGLFTRGQTQALSVLTLAPMSDTQLVDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFLHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSVEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGTNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   + +  +       L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRQG-ITALQMDIKISGITPAILEEALAQAKVARFEILD 538

Query: 233 LQKDVISNE 241
           + +  I+  
Sbjct: 539 VIESTIAEP 547



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 83/232 (35%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           R + +    V+K A G+ +V++GDT +L+TA + +K      +     +       G  P
Sbjct: 13  RPLVVEVGQVAKQANGAVVVRYGDTTVLSTAVMSKKMATADFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFNKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +         I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVAYAAEDFIINPSAADKEVSHL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D     T    I  V+  A+    S+D     L    + I +L+  Q  +++
Sbjct: 174 DLTVAGTKEA-INMVESGAQE--LSEDIMLQALLKGHEAIQELVDFQNYIVA 222


>gi|195351560|ref|XP_002042302.1| GM13365 [Drosophila sechellia]
 gi|194124145|gb|EDW46188.1| GM13365 [Drosophila sechellia]
          Length = 405

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 85/259 (32%), Gaps = 32/259 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           RL GR+ N+ R++ LT       + GS  V  GDT ++   T  E  P  +     G + 
Sbjct: 29  RLDGRRSNESRDVELTFGT----DWGSVAVSMGDTKVMAQVT-CEMGPPALSRPNEGKLH 83

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------I 112
               +   +  +             RS ++  ++ R  RS   +DL +L          I
Sbjct: 84  LNVLLGGVAFLDE-----AYSTHDQRSLKLNSLLERTFRSSKSIDLESLCVAAEKHVWCI 138

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ----------LSQVLKGHVA 162
            ++ +VI  DG    A+      AL    +      +             +  +   +  
Sbjct: 139 RVNVNVINHDGNLYDASSIATLAALMHFRRPDVSYKDGELCIFKQNEREFMPLLFHHYPV 198

Query: 163 AISCGMLC--GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +++  +    G PI+D    E++  D            +  +       T +        
Sbjct: 199 SVTYCVYKSSGQPILDPTLLEENAADSVIVLSFNSYQELCSLTAGGTAPTNAPTVMQCAR 258

Query: 221 NLAKDRIADLIKLQKDVIS 239
           N A      L+   +  ++
Sbjct: 259 NAAAR-CKSLLDFVRKALA 276


>gi|215404753|ref|ZP_03416934.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis 02_1987]
 gi|218754524|ref|ZP_03533320.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis GM 1503]
 gi|260201911|ref|ZP_05769402.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis T46]
 gi|308380469|ref|ZP_07669200.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu011]
 gi|308361392|gb|EFP50243.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu011]
          Length = 743

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 89/246 (36%), Gaps = 14/246 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    V   A GS L + G+T +L   T  + + M  +    G  T
Sbjct: 336 FRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQIL-GVTTLDMIKMAQQIDSLGPET 394

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +      Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 395 SKRYMHHYNFPPFSTGETGRVGSPKRREIGHG----ALAERALVPVLPSVEEFPYAIRQV 450

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG-HVAAISCGMLCGYPI 174
            + + ++G T   ++  + +AL +    ++       +  V     V     G++    +
Sbjct: 451 SEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDIQVEGAVDGVVERRFV 510

Query: 175 --VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
              D+   ED+  D+D     T    +  +Q   +            L  AKD    +++
Sbjct: 511 TLTDILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALEQAKDARLTILE 569

Query: 233 LQKDVI 238
           +  + I
Sbjct: 570 VMAEAI 575



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 70/244 (28%), Gaps = 38/244 (15%)

Query: 12  REISLTRRVSK-YAEGSCLVKFGDTHLLTTAT-----LEEKVPMWIRNTKHGWITAEYGM 65
           R I          A G+ +    D ++L +AT      +E    +             G 
Sbjct: 16  RTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHFDFFPLTVDVEERMYAAGR 75

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           QI++    +      
Sbjct: 76  IP---GSFFRRE---GRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVVTILSLD----- 124

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
                      L+D L      ++         G +  +   ++ G  +      +    
Sbjct: 125 --------PGDLYDVLAINAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERA 176

Query: 186 DVDANFVMT---DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
             D             I+ V+  A               ++    A L  AK  IA L  
Sbjct: 177 VFDMVVAGRIVEGDVAIMMVEAEATENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCT 236

Query: 233 LQKD 236
            Q++
Sbjct: 237 AQQE 240


>gi|307200434|gb|EFN80643.1| Exosome complex exonuclease MTR3 [Harpegnathos saltator]
          Length = 215

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 59/173 (34%), Gaps = 19/173 (10%)

Query: 32  FGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQ 91
            G+T ++ +     +VP        G +  E+   P S   R   +     Q    +E  
Sbjct: 1   MGNTKVICSVFDPREVPNKTGYCVQGELYCEFKFAPFSYRKRKMHQ-----QDAEEKEYS 55

Query: 92  RMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF 151
            ++ RAL   V LS   + Q+ I   V+   G    AAI  A +AL D    M       
Sbjct: 56  LVLQRALEPAVCLSEFPNFQVDIYATVLDNGGSALAAAIMAASLALADAGVPMYSL---- 111

Query: 152 QLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
                    V A + G+     +VD    E+S               I+ VQ 
Sbjct: 112 ---------VTASTIGVYDNTYLVDPTDEEESFCCSKTVLDANPDHGII-VQA 154


>gi|293977923|ref|YP_003543353.1| polyribonucleotide nucleotidyltransferase [Candidatus Sulcia
           muelleri DMIN]
 gi|292667854|gb|ADE35489.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Candidatus Sulcia muelleri DMIN]
          Length = 730

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 100/251 (39%), Gaps = 36/251 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR  + +R I           GS +   G+T  L+T TL   +   +    +  + 
Sbjct: 341 IRLDGRSLDDIRNIWSKVDCLPGVHGSAIFTRGETQALSTVTLGSSLD--VNKIDNAIMR 398

Query: 61  A------EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           A       Y   P STG     + VS R+ G       +  RAL++++  +      I +
Sbjct: 399 AKQRFYLHYNFPPFSTGEIKLLKGVSRREIGHG----NLAQRALKNIIPTT----STIRV 450

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----C 170
             DV++++G +  A +  + +AL D                ++K  V+ IS G++     
Sbjct: 451 VSDVLESNGSSSMATVCASTLALMDSGI-------------LVKRPVSGISMGLIMNYLT 497

Query: 171 GYPIV--DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
           G  I+  D+   ED   D+D     T+ G +   Q   + +  + D     +  AK  + 
Sbjct: 498 GEAIILSDILGDEDYIGDMDFKITGTEYG-MTACQMDIKISGITYDVLSYTIFKAKKGLL 556

Query: 229 DLIKLQKDVIS 239
            +IK     +S
Sbjct: 557 FIIKKMLTTLS 567



 Score = 65.1 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 82/245 (33%), Gaps = 41/245 (16%)

Query: 4   SGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGW 58
            GR       +S+    +++ A GS +V+ G+T LL T  +    +E          +  
Sbjct: 14  DGRA------LSIETGELARKANGSAVVRMGNTSLLATVVISKESKEDFKFIPLTIDYRE 67

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
             +  G +P   G  +KRE   GR         R++ R LR +   +     QI+I   +
Sbjct: 68  KYSAGGKIP---GGYIKRE---GRPYDEEILTMRLVDRLLRPLFKDNYYNEIQIMIS--L 119

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +  D              L D L  +   +         +G V+ +    +    I++  
Sbjct: 120 LSYDINV-----------LPDGLAGLVASTAVSISEISFQGPVSTVRIIRINDAFIINPG 168

Query: 179 YGE---------DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
             E                   V   + +I+ V+G  E    S+      +  A   I  
Sbjct: 169 IEEIKKSYLDLDLDLDLDLDLIVGGTNNYIILVEG--EMREISEIEMMEAIVKAHKYIQL 226

Query: 230 LIKLQ 234
            I+ Q
Sbjct: 227 QIEAQ 231


>gi|284929051|ref|YP_003421573.1| polyribonucleotide nucleotidyltransferase [cyanobacterium UCYN-A]
 gi|284809510|gb|ADB95215.1| polyribonucleotide nucleotidyltransferase [cyanobacterium UCYN-A]
          Length = 715

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 26/233 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           R+I L   +    A G+ L++ GDT +L TAT     E +        +       G +P
Sbjct: 13  RDIRLKLGLLAPQAGGAILIQSGDTAVLVTATTSKGREGIDFLPLTVDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   GR   R   I R+I R LR +         QII     +  +     
Sbjct: 73  ---GGFLRRE---GRPPERVTLISRLIDRPLRPLFPNWFRNDIQIIATTLSMDEEVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA +A+                     G +AA+  G++    I++  Y E    D+
Sbjct: 127 LAVTGASIAVIQAQI-------------PFFGPMAAVRVGLVGDDFIINPTYREVEDGDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     +  G +V ++  A +    +      ++   + + DLI  Q++++  
Sbjct: 174 DLVVAGSPDG-VVMIEAGANQ--LPEQDVIEAIDFGYEAVRDLIGAQQEIMEE 223



 Score = 91.3 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 79/229 (34%), Gaps = 20/229 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----T 54
           +R+ GR+ +++R I+    +      G  L   G T +L+ ATL                
Sbjct: 323 IRVDGRKLDEVRPITCDVGILPPRVHGCGLFNRGLTQVLSLATLGTPGDAQDLGDDLHPE 382

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y   P S        +   R+ G       +  RAL  V+         + +
Sbjct: 383 DEKRYLHHYNFPPYSVAETKPMRSPGRREIGHG----ALAERALLPVLPQQEEFPYVVRV 438

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             +V+ ++G T   ++ G+ +AL D    +    +   +  + +G              +
Sbjct: 439 VSEVLSSNGSTSMGSVCGSTLALMDAGVPIAKPVSGAAMGLIKEGEEV---------RIL 489

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
            D+   ED   D+D     TDSG I  +Q   +    S D     +  A
Sbjct: 490 TDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLSMDVIAKAIEQA 537


>gi|59006476|emb|CAI46226.1| hypothetical protein [Homo sapiens]
          Length = 248

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 79/252 (31%), Gaps = 43/252 (17%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++         P            A
Sbjct: 23  RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAFRSGPPGEEAQVASQFIA 82

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII-DCDV-- 118
           +                          E  ++I +      DL     + + +  CD+  
Sbjct: 83  DV------------------------IENSQIIQKE-----DLCISPGKLVWVLYCDLIC 113

Query: 119 IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAISCGML 169
           +  DG    A       AL +             + + + K +    ++ H  A S  + 
Sbjct: 114 LDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVATSFAVF 173

Query: 170 CGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                IVD    E+         VM + G +  +      +  +       ++ A  R  
Sbjct: 174 DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRAVTRHK 232

Query: 229 DLIKLQKDVISN 240
           ++ KL  +VI +
Sbjct: 233 EVKKLMDEVIKS 244


>gi|218133599|ref|ZP_03462403.1| hypothetical protein BACPEC_01468 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990974|gb|EEC56980.1| hypothetical protein BACPEC_01468 [Bacteroides pectinophilus ATCC
           43243]
          Length = 742

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 73/230 (31%), Gaps = 29/230 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56
           R  GR   Q+R ++    +     GS +   G T +    TL       KV     N   
Sbjct: 358 RPDGRAITQIRPLAAEIDLIPRVHGSAMFTRGQTQICDVVTLAPLSEAQKVDGLDENVTA 417

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         I    
Sbjct: 418 KRYIHHYNFPSYSVGETKPSRGPGRREIGHG----ALAERALIPVLPSEEEFPYAIRAVS 473

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +  +++G T  A+   + ++L                   +K  VA ISCG++ G     
Sbjct: 474 ETFESNGSTSMASTCASCMSLMAAGV-------------PIKRMVAGISCGLVTGDTDDD 520

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
              + D+   ED   D+D     T  G I  +Q   +    ++      +
Sbjct: 521 YIVLTDIQGLEDFFGDMDFKVTGTTEG-ITAIQMDIKIHGLTRPIVEEAI 569



 Score = 69.0 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 70/204 (34%), Gaps = 25/204 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V   A G+ L+ +GDT +L+TAT      E +  +  + ++       G +
Sbjct: 58  RTLTVDVGRVCAQANGAALMHYGDTVVLSTATASKEPREGIDFFPLSVEYEEKLYAVGKI 117

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  +    
Sbjct: 118 P---GGFNKRE---GKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMSVDPECRPE 171

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA +A                      G  A    GM+ G  +V+    +    D
Sbjct: 172 LVAMLGASIA-------------TCISDIPFDGPCAMTQLGMIDGEFVVNPSQEQWKNGD 218

Query: 187 VDANFVMTDSGHIVEVQGSAERAT 210
           +      T    ++ ++  A    
Sbjct: 219 LRLTVASTSQ-KVIMIECGANEVP 241


>gi|324998720|ref|ZP_08119832.1| polynucleotide phosphorylase/polyadenylase [Pseudonocardia sp. P1]
          Length = 759

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 94/252 (37%), Gaps = 34/252 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R +S    V   A GS L + G+T +L   T      +E+ +      T
Sbjct: 348 VRIDGRGLTDIRPLSAEVEVIPRAHGSALFERGETQIL-GVTTLNMLRMEQTIDSLGPET 406

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              ++   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 407 SKRYLH-HYNFPPFSTGETGRVGSPKRREIGHG----ALAERALLPVLPDREEFPYAIRQ 461

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP- 173
             + + ++G T   ++  + ++L +                 LK  VA I+ G++     
Sbjct: 462 VSEALGSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLVSDEVD 508

Query: 174 -------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                  + D+   ED+  D+D     T    +  +Q   +      +   A L+ AKD 
Sbjct: 509 GQTRYVALTDILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSEVLAAALSQAKDA 567

Query: 227 IADLIKLQKDVI 238
              ++++  + I
Sbjct: 568 RLTILEVIGEAI 579



 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 73/250 (29%), Gaps = 44/250 (17%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM-----WIRNTKHGWITAEYGM 65
           R +      +++ A GS +    D  +L +AT   K P      +             G 
Sbjct: 25  RTVRFEAGRLARQAAGSVVAYLDDETMLLSATTASKRPKDQFDFFPLTVDVEERMYAAGR 84

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR G  +    R+I R LR           Q+++    +      
Sbjct: 85  IP---GSFFRRE---GRPGTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLDPKDPY 138

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD------LDY 179
              AI  A  +                      G V  +   ++      D        +
Sbjct: 139 DVVAINAASASTQLAGL-------------PFSGPVGGVRVALIANETGTDTQWVAFPTH 185

Query: 180 GEDSTIDVDANF---VMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDR 226
            +      D      V+ D   I+ V+  A   T           ++D     L  AK  
Sbjct: 186 DQLERAAFDMVVAGRVVGDDVAIMMVEAEATEKTIELVDGGANAPTEDVVADGLEAAKPF 245

Query: 227 IADLIKLQKD 236
           I  L   Q+ 
Sbjct: 246 IRSLCVAQQQ 255


>gi|296269051|ref|YP_003651683.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Thermobispora bispora DSM 43833]
 gi|296091838|gb|ADG87790.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Thermobispora bispora DSM 43833]
          Length = 773

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 89/246 (36%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R+++    V     GS L + G+T +L   TL     E+    +   + 
Sbjct: 337 IRIDGRGPKDIRQLNAEVHVIPRVHGSALFERGETQILGITTLNMLRMEQTIDTLNPERT 396

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  A   R+ G       +  RAL  V+         I    
Sbjct: 397 KRYMHNYNFPPYSTGEVGRVGAPKRREIGHG----ALAERALLPVLPSREEFPYAIRQVS 452

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           + I ++G T   ++  + ++L D                 LK  VA I+ G++       
Sbjct: 453 EAIGSNGSTSMGSVCASTMSLLDAGV-------------PLKDMVAGIAMGLIGENGKYV 499

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T    I  +Q   +      +     L  A+     ++ 
Sbjct: 500 TLTDIIGAEDAMGDMDFKVAGTRDL-ITALQLDTKLDGIPAEVLAGALKQARSARLAILD 558

Query: 233 LQKDVI 238
           + K+ I
Sbjct: 559 VMKEAI 564



 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 76/245 (31%), Gaps = 39/245 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTATL----EEKVPMWIRNTKHGWITAEYGM 65
           R +      +++ A GS +    D T +L+  T+    +E +  +             G 
Sbjct: 19  RTVRFETGRLARQATGSAVAYLDDETMVLSATTVSKQPKEGLDFFPLTVDVEERMYAAGK 78

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           QI+     I  D   
Sbjct: 79  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFAKGLRNEVQIVATVLAIHPDHLY 132

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A ++                      G +  +  G++ G  +    Y E    
Sbjct: 133 DVVAINAASMSTQLAGL-------------PFSGPIGGVRVGLIDGKWVAFPTYSELENA 179

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
             D              I+ V+  + R T           +++     L  AK  I  L 
Sbjct: 180 TFDMVVAGRVLEDGDVAIMMVEAESTRNTLKLVAEGAVAPTEEVVAQGLEAAKPFIKVLC 239

Query: 232 KLQKD 236
           + Q+ 
Sbjct: 240 EAQEK 244


>gi|87303144|ref|ZP_01085942.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           5701]
 gi|87282311|gb|EAQ74271.1| polyribonucleotide nucleotidyltransferase [Synechococcus sp. WH
           5701]
          Length = 678

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 91/249 (36%), Gaps = 27/249 (10%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATL--EEKVPMWIRNTKHGW 58
           R+ GR  +++R IS    V  K   GS L + G T +L+TATL               G 
Sbjct: 292 RVDGRNLDEVRPISAAVGVLPKRVHGSGLFQRGLTQVLSTATLGTPSDAQEMDDLNPMGE 351

Query: 59  ITA--EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            T    Y   P S G      +   R+ G       +  RA+  V+         + +  
Sbjct: 352 KTYLHHYNFPPYSVGETRPMRSPGRREVGHG----ALAERAIVPVLPPKESFPYVLRVVS 407

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           + + ++G T   ++ G+ +AL D                 LK  V+  + G++       
Sbjct: 408 ECLSSNGSTSMGSVCGSTLALMDAGV-------------PLKAPVSGAAMGLIKEGDEVR 454

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T+ G I  +Q   + +  +       +N A+     +++
Sbjct: 455 ILTDIQGIEDFLGDMDFKVAGTEKG-ITALQMDMKISGLAVSTIAEAVNQARPARLHILE 513

Query: 233 LQKDVISNE 241
              + I   
Sbjct: 514 KMLEAIGKP 522



 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 84/216 (38%), Gaps = 27/216 (12%)

Query: 29  LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----MLPRSTGNRVKREAVSGRQG 84
           LV+ GDT +L TAT                +T +Y        R  G+  +RE   GR  
Sbjct: 2   LVECGDTAVLVTAT----RSKGREGIDFLPLTCDYEERLYAAGRIPGSFFRRE---GRPP 54

Query: 85  GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM 144
            R+    R+I R LR +         Q++  C  +         A+TGA +A        
Sbjct: 55  ERAILTTRLIDRPLRPLFPSWLRDDLQVVATCLSLDERVPPDVLAVTGASIATLLA---- 110

Query: 145 EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
                         G +AA+  G+L    +++  Y E    ++D     T +G +V V+ 
Sbjct: 111 ---------KIPFSGPMAAVRVGLLGDDFVLNPSYREIERSELDLVVAGTPTG-VVMVEA 160

Query: 205 SAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            A +    +      ++   + + +LIK Q+ ++++
Sbjct: 161 GANQ--LPEQDVIEAIDFGYEAVGELIKAQQKLLAD 194


>gi|317182464|dbj|BAJ60248.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           F57]
          Length = 688

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 88/249 (35%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------------TLEEKVP 48
           +R   R   ++R I +   +   A  S L   G T  L               +LE KVP
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKVP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGATSRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK    
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEVLYQALLQAKKARE 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 59.0 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 72/222 (32%), Gaps = 38/222 (17%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S + + G T +L +   E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLMYRLGKTIILASVCTERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
                         +  F         V+A     +    I++ +    +   +D     
Sbjct: 122 ----LQVSALNAASAALFLSHIAPIKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEV-----QGSAERATFSQDHFFAMLNLAKDRIAD 229
           T +S +++E+     Q +A             L LA+  + +
Sbjct: 178 TKESLNMIEMRSLGQQLNALEEPL----MLKALELAQKSLKE 215


>gi|291536078|emb|CBL09190.1| polyribonucleotide nucleotidyltransferase [Roseburia intestinalis
           M50/1]
          Length = 697

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 89/253 (35%), Gaps = 34/253 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE--KVPMWIRNTKHGWI 59
           R  GR  NQ+R ++    +     GS +   G T +    TL    +V   I        
Sbjct: 312 RPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEVQK-IDGLDENIT 370

Query: 60  TA----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           T     +Y     S G       VS   G R      +  +AL +V+         I   
Sbjct: 371 TKRYIHQYNFPAYSVGETK----VSRGPGRREIGHGALAEKALMAVLPSEEEFPYAIRAV 426

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            +  +++G T  A+   + ++L                   LK  VA ISCG++ G    
Sbjct: 427 SETFESNGSTSMASTCASCMSLMAAGV-------------PLKAMVAGISCGLVTGDTDD 473

Query: 173 ---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED   D+D     T  G I  +Q   +    ++      +  A++  A 
Sbjct: 474 DYLVLTDIQGLEDFFGDMDFKVTGTHKG-ITAIQMDIKIHGLTRPIVEEAIGRARE--AR 530

Query: 230 LIKLQKDVISNEV 242
           +  +  +V+S  +
Sbjct: 531 IY-IMDEVMSKAI 542



 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 75/214 (35%), Gaps = 27/214 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V   A G+ L+K+G+T +L+TAT      + V  +  + ++       G +
Sbjct: 12  RTLTVDIGRVCAQANGAALLKYGETTVLSTATASDKPRDGVDFFPLSVEYEEKMYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          I      +  +    
Sbjct: 72  P---GGFNKRE---GKASENAILTSRVIDRPMRPLFPKDYRNDVTINNMVMSVDPECRPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A+                     G  A    GM+ G  I++       T D
Sbjct: 126 VVAMIGSALAV-------------TISDIPFAGPCAMTQMGMVDGEFIINPSQKVWDTGD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +      T    ++ ++  A      ++     +
Sbjct: 173 LQLTVASTAE-KVIMIEAGANEIP--EEKMIEAI 203


>gi|260206095|ref|ZP_05773586.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis K85]
 gi|289575481|ref|ZP_06455708.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis K85]
 gi|289539912|gb|EFD44490.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis K85]
          Length = 752

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 89/246 (36%), Gaps = 14/246 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    V   A GS L + G+T +L   T  + + M  +    G  T
Sbjct: 345 FRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQIL-GVTTLDMIKMAQQIDSLGPET 403

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +      Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 404 SKRYMHHYNFPPFSTGETGRVGSPKRREIGHG----ALAERALVPVLPSVEEFPYAIRQV 459

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG-HVAAISCGMLCGYPI 174
            + + ++G T   ++  + +AL +    ++       +  V     V     G++    +
Sbjct: 460 SEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDIQVEGAVDGVVERRFV 519

Query: 175 --VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
              D+   ED+  D+D     T    +  +Q   +            L  AKD    +++
Sbjct: 520 TLTDILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALEQAKDARLTILE 578

Query: 233 LQKDVI 238
           +  + I
Sbjct: 579 VMAEAI 584



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 70/244 (28%), Gaps = 38/244 (15%)

Query: 12  REISLTRRVSK-YAEGSCLVKFGDTHLLTTAT-----LEEKVPMWIRNTKHGWITAEYGM 65
           R I          A G+ +    D ++L +AT      +E    +             G 
Sbjct: 25  RTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHFDFFPLTVDVEERMYAAGR 84

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           QI++    +      
Sbjct: 85  IP---GSFFRRE---GRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVVTILSLD----- 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
                      L+D L      ++         G +  +   ++ G  +      +    
Sbjct: 134 --------PGDLYDVLAINAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERA 185

Query: 186 DVDANFVMT---DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
             D             I+ V+  A               ++    A L  AK  IA L  
Sbjct: 186 VFDMVVAGRIVEGDVAIMMVEAEATENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCT 245

Query: 233 LQKD 236
            Q++
Sbjct: 246 AQQE 249


>gi|215431723|ref|ZP_03429642.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis EAS054]
          Length = 743

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 89/246 (36%), Gaps = 14/246 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    V   A GS L + G+T +L   T  + + M  +    G  T
Sbjct: 336 FRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQIL-GVTTLDMIKMAQQIDSLGPET 394

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +      Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 395 SKRYMHHYNFPPFSTGETGRVGSPKRREIGHG----ALAERALVPVLPSVEEFPYAIRQV 450

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG-HVAAISCGMLCGYPI 174
            + + ++G T   ++  + +AL +    ++       +  V     V     G++    +
Sbjct: 451 SEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDIQVEGAVDGVVERRFV 510

Query: 175 --VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
              D+   ED+  D+D     T    +  +Q   +            L  AKD    +++
Sbjct: 511 TLTDILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALEQAKDARLTILE 569

Query: 233 LQKDVI 238
           +  + I
Sbjct: 570 VMAEAI 575



 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 71/244 (29%), Gaps = 38/244 (15%)

Query: 12  REISLTRRVSK-YAEGSCLVKFGDTHLLTTAT-----LEEKVPMWIRNTKHGWITAEYGM 65
           R I          A G+ +    D ++L +AT      +E V  +             G 
Sbjct: 16  RTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHVDFFPLTVDVEERMYAAGR 75

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           QI++    +      
Sbjct: 76  IP---GSFFRRE---GRPSTDAILTCRLIDRPLRPSFVDGLRDEIQIVVTILSLD----- 124

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
                      L+D L      ++         G +  +   ++ G  +      +    
Sbjct: 125 --------PGDLYDVLAINAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERA 176

Query: 186 DVDANFVMT---DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
             D             I+ V+  A               ++    A L  AK  IA L  
Sbjct: 177 VFDMVVAGRIVEGDVAIMMVEAEATENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCT 236

Query: 233 LQKD 236
            Q++
Sbjct: 237 AQQE 240


>gi|15609920|ref|NP_217299.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis H37Rv]
 gi|15842321|ref|NP_337358.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis CDC1551]
 gi|31793959|ref|NP_856452.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium bovis
           AF2122/97]
 gi|121638663|ref|YP_978887.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148662625|ref|YP_001284148.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis H37Ra]
 gi|148823971|ref|YP_001288725.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis F11]
 gi|167968613|ref|ZP_02550890.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis H37Ra]
 gi|215412596|ref|ZP_03421324.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215428215|ref|ZP_03426134.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis T92]
 gi|215447035|ref|ZP_03433787.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis T85]
 gi|219558792|ref|ZP_03537868.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis T17]
 gi|224991155|ref|YP_002645844.1| polyribonucleotide phosphorylase/polyadenylase [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253798133|ref|YP_003031134.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis KZN 1435]
 gi|254232881|ref|ZP_04926208.1| bifunctional protein polyribonucleotide nucleotidyltransferase gpsI
           : guanosine pentaphosphate synthetase +
           polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis C]
 gi|254365434|ref|ZP_04981479.1| bifunctional protein polyribonucleotide nucleotidyltransferase gpsI
           : guanosine pentaphosphate synthetase +
           polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254551842|ref|ZP_05142289.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260187800|ref|ZP_05765274.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis CPHL_A]
 gi|289444328|ref|ZP_06434072.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis T46]
 gi|289448441|ref|ZP_06438185.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis CPHL_A]
 gi|289553430|ref|ZP_06442640.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis KZN 605]
 gi|289570962|ref|ZP_06451189.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis T17]
 gi|289746586|ref|ZP_06505964.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis 02_1987]
 gi|289751440|ref|ZP_06510818.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis T92]
 gi|289758910|ref|ZP_06518288.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis T85]
 gi|289762955|ref|ZP_06522333.1| guanosine pentaphosphate synthetase + polyribonucleotide
           nucleotidyltransferase [Mycobacterium tuberculosis GM
           1503]
 gi|294994124|ref|ZP_06799815.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis 210]
 gi|297635394|ref|ZP_06953174.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732392|ref|ZP_06961510.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis KZN R506]
 gi|298526249|ref|ZP_07013658.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Mycobacterium tuberculosis
           94_M4241A]
 gi|306780966|ref|ZP_07419303.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu002]
 gi|306785594|ref|ZP_07423916.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu003]
 gi|306790189|ref|ZP_07428511.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu004]
 gi|306794273|ref|ZP_07432575.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu005]
 gi|306798691|ref|ZP_07436993.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu006]
 gi|306804546|ref|ZP_07441214.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu008]
 gi|306807414|ref|ZP_07444082.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu007]
 gi|307085479|ref|ZP_07494592.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu012]
 gi|308378098|ref|ZP_07668668.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu009]
 gi|313659724|ref|ZP_07816604.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           tuberculosis KZN V2475]
 gi|81421764|sp|Q7TXW0|PNP_MYCBO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|81669114|sp|O33325|PNP_MYCTU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610286|sp|A1KMC6|PNP_MYCBP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610290|sp|A5U6D6|PNP_MYCTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782730|sp|C1AFP7|PNP_MYCBT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|2624305|emb|CAA15578.1| BIFUNCTIONAL PROTEIN POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
           GPSI: GUANOSINE PENTAPHOSPHATE SYNTHETASE +
           POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
           (POLYNUCLEOTIDE PHOSPHORYLASE) (PNPASE) [Mycobacterium
           tuberculosis H37Rv]
 gi|13882616|gb|AAK47172.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Mycobacterium tuberculosis
           CDC1551]
 gi|31619553|emb|CAD94991.1| BIFUNCTIONAL PROTEIN POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
           GPSI: GUANOSINE PENTAPHOSPHATE SYNTHETASE +
           POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
           (POLYNUCLEOTIDE PHOSPHORYLASE) (PNPASE) [Mycobacterium
           bovis AF2122/97]
 gi|121494311|emb|CAL72789.1| Bifunctional protein polyribonucleotide nucleotidyltransferase
           gpsI: guanosine pentaphosphate synthetase +
           polyribonucleotide nucleotidyltransferase [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|124601940|gb|EAY60950.1| bifunctional protein polyribonucleotide nucleotidyltransferase gpsI
           : guanosine pentaphosphate synthetase +
           polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis C]
 gi|134150947|gb|EBA42992.1| bifunctional protein polyribonucleotide nucleotidyltransferase gpsI
           : guanosine pentaphosphate synthetase +
           polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148506777|gb|ABQ74586.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Mycobacterium tuberculosis
           H37Ra]
 gi|148722498|gb|ABR07123.1| bifunctional protein polyribonucleotide nucleotidyltransferase
           gpsI: guanosine pentaphosphate synthetase +
           polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis F11]
 gi|224774270|dbj|BAH27076.1| polyribonucleotide phosphorylase/polyadenylase [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253319636|gb|ACT24239.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis KZN 1435]
 gi|289417247|gb|EFD14487.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis T46]
 gi|289421399|gb|EFD18600.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis CPHL_A]
 gi|289438062|gb|EFD20555.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis KZN 605]
 gi|289544716|gb|EFD48364.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis T17]
 gi|289687114|gb|EFD54602.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis 02_1987]
 gi|289692027|gb|EFD59456.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis T92]
 gi|289710461|gb|EFD74477.1| guanosine pentaphosphate synthetase + polyribonucleotide
           nucleotidyltransferase [Mycobacterium tuberculosis GM
           1503]
 gi|289714474|gb|EFD78486.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis T85]
 gi|298496043|gb|EFI31337.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Mycobacterium tuberculosis
           94_M4241A]
 gi|308326219|gb|EFP15070.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu002]
 gi|308329777|gb|EFP18628.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu003]
 gi|308333383|gb|EFP22234.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu004]
 gi|308337406|gb|EFP26257.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu005]
 gi|308341071|gb|EFP29922.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu006]
 gi|308346145|gb|EFP34996.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu007]
 gi|308348876|gb|EFP37727.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu008]
 gi|308353596|gb|EFP42447.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu009]
 gi|308365003|gb|EFP53854.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis SUMu012]
 gi|323718629|gb|EGB27793.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis CDC1551A]
 gi|326904398|gb|EGE51331.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis W-148]
 gi|328457906|gb|AEB03329.1| bifunctional polyribonucleotide nucleotidyltransferase gpsI
           [Mycobacterium tuberculosis KZN 4207]
          Length = 752

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 89/246 (36%), Gaps = 14/246 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    V   A GS L + G+T +L   T  + + M  +    G  T
Sbjct: 345 FRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQIL-GVTTLDMIKMAQQIDSLGPET 403

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +      Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 404 SKRYMHHYNFPPFSTGETGRVGSPKRREIGHG----ALAERALVPVLPSVEEFPYAIRQV 459

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG-HVAAISCGMLCGYPI 174
            + + ++G T   ++  + +AL +    ++       +  V     V     G++    +
Sbjct: 460 SEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDIQVEGAVDGVVERRFV 519

Query: 175 --VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
              D+   ED+  D+D     T    +  +Q   +            L  AKD    +++
Sbjct: 520 TLTDILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALEQAKDARLTILE 578

Query: 233 LQKDVI 238
           +  + I
Sbjct: 579 VMAEAI 584



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 70/244 (28%), Gaps = 38/244 (15%)

Query: 12  REISLTRRVSK-YAEGSCLVKFGDTHLLTTAT-----LEEKVPMWIRNTKHGWITAEYGM 65
           R I          A G+ +    D ++L +AT      +E    +             G 
Sbjct: 25  RTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHFDFFPLTVDVEERMYAAGR 84

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           QI++    +      
Sbjct: 85  IP---GSFFRRE---GRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVVTILSLD----- 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
                      L+D L      ++         G +  +   ++ G  +      +    
Sbjct: 134 --------PGDLYDVLAINAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERA 185

Query: 186 DVDANFVMT---DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
             D             I+ V+  A               ++    A L  AK  IA L  
Sbjct: 186 VFDMVVAGRIVEGDVAIMMVEAEATENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCT 245

Query: 233 LQKD 236
            Q++
Sbjct: 246 AQQE 249


>gi|281355549|ref|ZP_06242043.1| polyribonucleotide nucleotidyltransferase [Victivallis vadensis
           ATCC BAA-548]
 gi|281318429|gb|EFB02449.1| polyribonucleotide nucleotidyltransferase [Victivallis vadensis
           ATCC BAA-548]
          Length = 703

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 84/249 (33%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-------N 53
            R  GR   ++R +S    V     GS L   G+T  L  ATL  +              
Sbjct: 317 FRPDGRSTTEIRPLSAEVGVLPVVHGSALFSRGETQALVLATLGNEKDAQEADDLTSETG 376

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
                    Y     S G   +      R+ G       +  R++  VV         + 
Sbjct: 377 ITKKRFYLHYNFPNFSVGEVGRITGPGRREIGHG----NLAERSVSKVVPKDF--PYVVR 430

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY- 172
              +++ ++G T  A++ GA +AL D                 +   VA ISCG++ G  
Sbjct: 431 CVSEIMSSNGSTSMASVCGATLALMDAGV-------------PISAPVAGISCGLVTGDN 477

Query: 173 ----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN---LAKD 225
                + D+   ED   D+D     T  G I   Q   +      D     +    +A+ 
Sbjct: 478 GERLLLTDIIGAEDHFGDMDFKVCGTRDG-ITGFQLDLKLPGIPIDLLCEGMERNRIARM 536

Query: 226 RIADLIKLQ 234
           +I D+++  
Sbjct: 537 KILDVMEAC 545



 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 89/236 (37%), Gaps = 31/236 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           R + ++   V+K A GSCLV+ GDT +LT A      E    +     +    +  G  P
Sbjct: 14  RTMEISTGKVAKLANGSCLVRLGDTIVLTAACSGAPREGTDFFPLQVDYREKYSAAGKFP 73

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   +     RMI R +R +         QI     ++ ADG    
Sbjct: 74  ---GGYIKRE---GRPSTKEILTCRMIDRPIRPLFPDYFFDEVQI--SSVLLSADG---- 121

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD--YGEDSTI 185
                  V   D L  +   ++        +G + A+  G++ G  +++      E S +
Sbjct: 122 -------VNEPDVLAMVGASASLMLSDLPFQGPIGAVRVGLVDGQFVINPTRAQMEQSKL 174

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           +            ++ ++G  E    S+      + LA + +      Q + ++ +
Sbjct: 175 E---LIYAGRPDQVIMIEG--EADFVSEAQMKEAMYLANEAVKKQCDAQIE-LAKK 224


>gi|260589519|ref|ZP_05855432.1| polyribonucleotide nucleotidyltransferase [Blautia hansenii DSM
           20583]
 gi|260540087|gb|EEX20656.1| polyribonucleotide nucleotidyltransferase [Blautia hansenii DSM
           20583]
          Length = 691

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 76/228 (33%), Gaps = 25/228 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
           R  GR   ++R ++    +     GS +   G T  + T T          +       +
Sbjct: 306 RPDGRAITEIRPLAAETDIIPRVHGSAMFTRGQTQ-ICTITTLAPLSEAQRLDGLDEFEV 364

Query: 60  TAEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  Y M   +  +    E    R  G R      +  RAL  V+         I    + 
Sbjct: 365 SKRY-MHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVIPGVEEFPYAIRTVSET 423

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY------ 172
            +++G T  A+I  + ++L                   +K  VA ISCG++ G       
Sbjct: 424 FESNGSTSQASICASTMSLMAAGV-------------PIKKPVAGISCGLVTGETDDDYL 470

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
            + D+   ED   D+D     T  G I  +Q   +    ++      +
Sbjct: 471 VLTDIQGLEDFFGDMDFKVAGTHDG-ITAIQMDIKIHGLTRQIIEEAI 517



 Score = 82.4 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 85/234 (36%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+K A G+ L+++GDT +L+TAT      E +  +  + ++       G +
Sbjct: 6   RILTVDIGRVAKQANGAALMRYGDTTVLSTATASDKPREGIDFFPLSVEYEEKMYAVGKI 65

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      + ++    
Sbjct: 66  P---GGFNKRE---GKASEHAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMAVDSECNPE 119

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  AA   GM+ G  +V+    +    D
Sbjct: 120 VVAMLGSSIA-------------TCISDIPFDGPCAATQIGMVNGELVVNPSLAQKEISD 166

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    ++ ++  A      +      +  A +   ++I     +++ 
Sbjct: 167 LQLTVASTRE-KVIMIEAGANEIP--EAKMIEAIFKAHEVNQEIIAFIDKIVAE 217


>gi|148655103|ref|YP_001275308.1| polynucleotide phosphorylase/polyadenylase [Roseiflexus sp. RS-1]
 gi|187611283|sp|A5URV5|PNP_ROSS1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|148567213|gb|ABQ89358.1| Polyribonucleotide nucleotidyltransferase [Roseiflexus sp. RS-1]
          Length = 747

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 91/250 (36%), Gaps = 29/250 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    +R IS+   +     GS L   G T +LT ATL        R    G  T 
Sbjct: 321 RVDGRGPKDIRPISIEVGLIPRVHGSGLFTRGQTQVLTLATLGSPAEEQ-RLDDLGIETT 379

Query: 62  -----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R  G       +  R+L +V+         + +  
Sbjct: 380 KRYIHHYNFPPFSTGEVRRLGSPRRRDIGHG----ALAERSLLAVLPSKEEFPYTMRLVS 435

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171
           + + ++G +  A++ G+ +AL D                 +K  VA ++ G++ G     
Sbjct: 436 ETLSSNGSSSMASVCGSSLALMDAGV-------------PIKAPVAGVAMGLITGKDGRW 482

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G +  +Q   +    + +        A++    ++
Sbjct: 483 RVLTDIQGIEDHLGDMDFKVAGTAKG-VTGLQLDIKTTGITYEIMREAFAQAREGRLYIL 541

Query: 232 KLQKDVISNE 241
                VIS  
Sbjct: 542 DKMNAVISEP 551



 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 83/234 (35%), Gaps = 29/234 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM-----WIRNTKHGWITAEYGM 65
           R ++L     ++ A G+ +V++GDT LL TA +  K P      +     +       G 
Sbjct: 16  RTLTLEAGRFAEQANGAVVVRYGDTMLLATA-VASKEPRADADFFPLTVDYEEKMYAAGK 74

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  KRE   G+    +    R+  R LR +         QII+    I      
Sbjct: 75  IP---GSFFKRE---GKPTDSAILTARLTDRPLRPLFPEGYRNEVQIIVTTFSIDMVNDP 128

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI GA  AL                     G V A+  G + G   ++ +  +    
Sbjct: 129 APLAIIGASAALA-------------ISDIPFLGPVGAVQVGYIDGKVQINPEMPDMPNS 175

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D+D     T    ++ V+  A+     +D     +         +  LQ +++ 
Sbjct: 176 DLDLVVAGTKDA-VLMVEAGAKE--LPEDLMLEAIIQGHQVCKQICDLQNELVR 226


>gi|291538574|emb|CBL11685.1| polyribonucleotide nucleotidyltransferase [Roseburia intestinalis
           XB6B4]
          Length = 719

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 89/253 (35%), Gaps = 34/253 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE--KVPMWIRNTKHGWI 59
           R  GR  NQ+R ++    +     GS +   G T +    TL    +V   I        
Sbjct: 334 RPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEVQK-IDGLDENIT 392

Query: 60  TA----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           T     +Y     S G       VS   G R      +  +AL +V+         I   
Sbjct: 393 TKRYIHQYNFPAYSVGETK----VSRGPGRREIGHGALAEKALMAVLPSEEEFPYAIRAV 448

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            +  +++G T  A+   + ++L                   LK  VA ISCG++ G    
Sbjct: 449 SETFESNGSTSMASTCASCMSLMAAGV-------------PLKAMVAGISCGLVTGDTDD 495

Query: 173 ---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED   D+D     T  G I  +Q   +    ++      +  A++  A 
Sbjct: 496 DYLVLTDIQGLEDFFGDMDFKVTGTHKG-ITAIQMDIKIHGLTRPIVEEAIGRARE--AR 552

Query: 230 LIKLQKDVISNEV 242
           +  +  +V+S  +
Sbjct: 553 IY-IMDEVMSKAI 564



 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 74/214 (34%), Gaps = 27/214 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V   A G+ L+K+G+T +L+TAT      + V  +  + ++       G +
Sbjct: 34  RTLTVDIGRVCAQANGAALLKYGETTVLSTATASDKPRDGVDFFPLSVEYEEKMYAVGKI 93

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          I      +  +    
Sbjct: 94  P---GGFNKRE---GKASENAILTSRVIDRPMRPLFPKDYRNDVTINNMVMSVDPECRPE 147

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A+                     G  A    GM  G  I++       T D
Sbjct: 148 VVAMIGSALAV-------------TISDIPFAGPCAMTQMGMADGEFIINPSQKVWDTGD 194

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +      T    ++ ++  A      ++     +
Sbjct: 195 LQLTVASTAE-KVIMIEAGANEIP--EEKMIEAI 225


>gi|312080640|ref|XP_003142686.1| hypothetical protein LOAG_07104 [Loa loa]
 gi|307762153|gb|EFO21387.1| hypothetical protein LOAG_07104 [Loa loa]
          Length = 521

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/261 (21%), Positives = 96/261 (36%), Gaps = 31/261 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR+ ++ RE+ +         GSCLV  G+T +L   +     P  +R    G +  
Sbjct: 151 RIDGRKCDEFREVKVIVG---SELGSCLVMLGETKVLAQVSCSLVEPSTVRG-NMGTVEV 206

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSR------QII 113
              M P ++ +        GR G +  E+ R++    R   V+DL +L  R      QI 
Sbjct: 207 HVDMSPMASPDY-----EDGRLGSKGLELMRILELLYRNSGVIDLESLCLRTFKQVWQIR 261

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDC------------LQHMEDCSNKFQLSQVLKGHV 161
           ID  V+ +DG     A   +  AL               +        K  +S  +    
Sbjct: 262 IDVHVLASDGSLVDCACIASLTALAHFRRPDVSVLPDSIIIASHGNDEKMPISLNIYHMP 321

Query: 162 AAISCGML-CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
             I+ G+   G  I+D    E+  +             I  +  S      S+      +
Sbjct: 322 VCITFGITSDGQNIIDPTDKEEQCLRGSLIVATNKRHEICALHQSG-NFLLSEQLIVQCV 380

Query: 221 NLAKDRIADLIKLQKDVISNE 241
           + A  R  D+ +L   VI+++
Sbjct: 381 DRAIQRAVDVSELIYSVIADD 401


>gi|257413916|ref|ZP_04744667.2| polyribonucleotide nucleotidyltransferase [Roseburia intestinalis
           L1-82]
 gi|257201810|gb|EEV00095.1| polyribonucleotide nucleotidyltransferase [Roseburia intestinalis
           L1-82]
          Length = 719

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 89/253 (35%), Gaps = 34/253 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE--KVPMWIRNTKHGWI 59
           R  GR  NQ+R ++    +     GS +   G T +    TL    +V   I        
Sbjct: 334 RPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEVQK-IDGLDENIT 392

Query: 60  TA----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           T     +Y     S G       VS   G R      +  +AL +V+         I   
Sbjct: 393 TKRYIHQYNFPAYSVGETK----VSRGPGRREIGHGALAEKALMAVLPSEEEFPYAIRAV 448

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            +  +++G T  A+   + ++L                   LK  VA ISCG++ G    
Sbjct: 449 SETFESNGSTSMASTCASCMSLMAAGV-------------PLKAMVAGISCGLVTGDTDD 495

Query: 173 ---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED   D+D     T  G I  +Q   +    ++      +  A++  A 
Sbjct: 496 DYLVLTDIQGLEDFFGDMDFKVTGTHKG-ITAIQMDIKIHGLTRPIVEEAIGRARE--AR 552

Query: 230 LIKLQKDVISNEV 242
           +  +  +V+S  +
Sbjct: 553 IY-IMDEVMSKAI 564



 Score = 68.6 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 75/214 (35%), Gaps = 27/214 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V   A G+ L+K+G+T +L+TAT      + V  +  + ++       G +
Sbjct: 34  RTLTVDIGRVCAQANGAALLKYGETTVLSTATASDKPRDGVDFFPLSVEYEEKMYAVGKI 93

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          I      +  +    
Sbjct: 94  P---GGFNKRE---GKASENAILTSRVIDRPMRPLFPKDYRNDVTINNMVMSVDPECRPE 147

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A+                     G  A    GM+ G  I++       T D
Sbjct: 148 VVAMIGSALAV-------------TISDIPFAGPCAMTQMGMVDGEFIINPSQKVWDTGD 194

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +      T    ++ ++  A      ++     +
Sbjct: 195 LQLTVASTAE-KVIMIEAGANEIP--EEKMIEAI 225


>gi|124808870|ref|XP_001348430.1| exosome complex exonuclease rrp41, putative [Plasmodium falciparum
           3D7]
 gi|23497324|gb|AAN36869.1|AE014820_19 exosome complex exonuclease rrp41, putative [Plasmodium falciparum
           3D7]
          Length = 246

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 89/238 (37%), Gaps = 27/238 (11%)

Query: 2   RLSGRQENQMREISLTRR---VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           R+ GR+ ++ R I ++          +G    + G+T L        +   + R  +   
Sbjct: 13  RIDGRKNDECRLIKISLGNGNELIDVDGFSFFEIGNTKLFAYIQGPNE---YRRPDEKCL 69

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +     + P +   + ++++        ++EI   I      ++ L    + +I I   +
Sbjct: 70  VKCNVFLSPFNILEKKRKKSK----DNVTREISSYIRNICNHIILLDLYKNSEINIFLYI 125

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           I+ DGG + AA+    +AL D                 +K  ++A S   L    IVD +
Sbjct: 126 IERDGGLKAAAVNTCILALIDAGIA-------------IKYFISASSVLYLQNNIIVDGN 172

Query: 179 YGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
             E ++   +    +   S +IV ++  AE      D F +ML         +  + K
Sbjct: 173 QFEVNSGSPELTLAIDMSSNNIVLLEFDAE---VPIDIFQSMLKTCAQACIHVGNIMK 227


>gi|289754889|ref|ZP_06514267.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis EAS054]
 gi|289695476|gb|EFD62905.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           tuberculosis EAS054]
          Length = 752

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 89/246 (36%), Gaps = 14/246 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    V   A GS L + G+T +L   T  + + M  +    G  T
Sbjct: 345 FRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQIL-GVTTLDMIKMAQQIDSLGPET 403

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +      Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 404 SKRYMHHYNFPPFSTGETGRVGSPKRREIGHG----ALAERALVPVLPSVEEFPYAIRQV 459

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG-HVAAISCGMLCGYPI 174
            + + ++G T   ++  + +AL +    ++       +  V     V     G++    +
Sbjct: 460 SEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDIQVEGAVDGVVERRFV 519

Query: 175 --VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
              D+   ED+  D+D     T    +  +Q   +            L  AKD    +++
Sbjct: 520 TLTDILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALEQAKDARLTILE 578

Query: 233 LQKDVI 238
           +  + I
Sbjct: 579 VMAEAI 584



 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 71/244 (29%), Gaps = 38/244 (15%)

Query: 12  REISLTRRVSK-YAEGSCLVKFGDTHLLTTAT-----LEEKVPMWIRNTKHGWITAEYGM 65
           R I          A G+ +    D ++L +AT      +E V  +             G 
Sbjct: 25  RTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHVDFFPLTVDVEERMYAAGR 84

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           QI++    +      
Sbjct: 85  IP---GSFFRRE---GRPSTDAILTCRLIDRPLRPSFVDGLRDEIQIVVTILSLD----- 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
                      L+D L      ++         G +  +   ++ G  +      +    
Sbjct: 134 --------PGDLYDVLAINAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERA 185

Query: 186 DVDANFVMT---DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
             D             I+ V+  A               ++    A L  AK  IA L  
Sbjct: 186 VFDMVVAGRIVEGDVAIMMVEAEATENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCT 245

Query: 233 LQKD 236
            Q++
Sbjct: 246 AQQE 249


>gi|254525392|ref|ZP_05137444.1| 3' exoribonuclease family, domain 2, protein [Prochlorococcus
           marinus str. MIT 9202]
 gi|221536816|gb|EEE39269.1| 3' exoribonuclease family, domain 2, protein [Prochlorococcus
           marinus str. MIT 9202]
          Length = 691

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 92/251 (36%), Gaps = 31/251 (12%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R+ GR  +++R+IS    +  K   GS L + G T +L+T TL    P   +       +
Sbjct: 293 RVDGRDLDEVRKISAFAGILPKRVHGSALFQRGLTQVLSTTTL--GTPSDAQEMDDLNPS 350

Query: 61  AE------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
            E      Y   P S G          R+ G       +  RA+  V+         + +
Sbjct: 351 TEKTYLHHYNFPPYSVGETRPMRTPGRREIGHG----ALAERAIIPVLPGKETFPYVLRV 406

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V+ ++G T   ++ G+ ++L D                 LK  V+  + G++     
Sbjct: 407 VSEVLSSNGSTSMGSVCGSTLSLLDAGV-------------PLKAPVSGTAMGLIKEGKE 453

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     TD G I  +Q   +            +  A+     +
Sbjct: 454 VRILTDIQGIEDFLGDMDFKVAGTDKG-ITALQMDMKITGLPVSIISDAIKKARPARLHI 512

Query: 231 IKLQKDVISNE 241
           ++  ++ I+  
Sbjct: 513 LEKMQEAINKP 523



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 84/220 (38%), Gaps = 35/220 (15%)

Query: 29  LVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----MLPRSTGNRVKREAVSGRQG 84
           +++ GDT LL    +          +    +  +Y        R  G  ++RE   GR  
Sbjct: 1   MIECGDTSLL----VTATKTTKKDTSDFLPLICDYEEKLYAAGRIPGGFMRRE---GRPP 53

Query: 85  GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ----ADGGTRTAAITGAWVALHDC 140
            R+  I R+I R +R +         QI+  C  +     AD      A+TGA +A    
Sbjct: 54  ERATLIARLIDRPMRPLFPSWMRDEIQIVASCLSLDERVPAD----VLAVTGASLA---- 105

Query: 141 LQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIV 200
                             G +AA+  G++    I++  Y E    D+D     T  G IV
Sbjct: 106 ---------TLLGEIPFYGPMAAVRVGLIGDDFILNPSYREIEKGDLDIVIAGTPDG-IV 155

Query: 201 EVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            ++  A +   S+      ++   + + +LIK Q D++ +
Sbjct: 156 MIEAGANQ--LSEQDTIEAIDFGYEAVTELIKSQDDLLKD 193


>gi|332076425|gb|EGI86888.1| polyribonucleotide nucleotidyltransferase [Streptococcus pneumoniae
           GA41301]
          Length = 737

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 317 VRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDPEYK 376

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 377 KRFIHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 432

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 433 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 479

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILTEALAQAKKARFEILD 538

Query: 233 LQKDVI 238
           + +  I
Sbjct: 539 VIEATI 544



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 13  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 73  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 127 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 174 ELTVAGTKHA-INMVESGAKE--LSEEIMLEALLKGHEAVKELIAFQEEIVA 222


>gi|294056196|ref|YP_003549854.1| polyribonucleotide nucleotidyltransferase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615529|gb|ADE55684.1| polyribonucleotide nucleotidyltransferase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 724

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 83/243 (34%), Gaps = 15/243 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKH 56
           R+ GR    +R IS    V     GS +   G+T  L  +TL      + +         
Sbjct: 315 RVDGRGAKDLRAISCDTGVLPRVHGSAVFNRGETQALVISTLGTSRDVQDIDGLTGGATS 374

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +      R+ G       +  R+L  ++         I +  
Sbjct: 375 KSFILHYNFPPFSTGEAGRFGFTGRREIGHG----ALAERSLLPILPPEDEFPYAIRVVS 430

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175
           +V+ ++G T  A+I G  ++L D    +           V +      + G +  + I+ 
Sbjct: 431 EVMSSNGSTSMASICGGCLSLMDAGVPITAPCAGISTGLVTEKD----ADGKITKHVILT 486

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D     T  G I   Q   +      D     +   +D    +I +  
Sbjct: 487 DILGAEDHFGDMDFKIAGTPEG-ITGFQLDLKIQGLPFDITLEAIKQNRDARMKIIAIMA 545

Query: 236 DVI 238
           + +
Sbjct: 546 EHL 548



 Score = 82.1 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 79/228 (34%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVSKY-AEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           I ++       A G+  ++ G+T L  +AT    L      +     +    +  G  P 
Sbjct: 14  IEISTGTLAGLASGAVTIRQGETELFVSATAASALRPGQDFFPLTVDYREKFSAGGKFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+   +     R+  R LR +     +   Q+I               
Sbjct: 73  --GGYFKRE---GKPSEKEILTSRLCDRPLRPLFPKGFMNEVQVIGLLLATDQTHEPDVL 127

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
            +  A  A                      G V  +  G + G  + +  + E    D+D
Sbjct: 128 MVNAASAA-------------TLISDIPWNGPVGCVRVGQIDGEFVTNPTHDEMLDSDLD 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             +V +++  ++ ++GSAE    S + F+  L   +  I  +I  QK+
Sbjct: 175 LIYVGSET-EMMMIEGSAE--FISDERFYEALEYGQQAIQPIIAAQKE 219


>gi|260400856|gb|ACX37015.1| polynucleotide phosphorylase/polyadenylase [Nonomuraea sp. ATCC
           39727]
          Length = 780

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 89/245 (36%), Gaps = 17/245 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R +S    V     GS L + G+T +L   TL     E+V   +   + 
Sbjct: 337 VRIDGRGTKDIRALSAEVHVVPRVHGSALFERGETQILGITTLNMLRMEQVIDTLNPERT 396

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 397 KRYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALIPVLPTREEFPYAIRQVS 452

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  + +AL D    +++      +  + +G    ++        + D
Sbjct: 453 EALGSNGSTSMGSVCASTMALLDAGVPLKEMVAGIAMGLIGEGDTHYVT--------LTD 504

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    I  +Q   +            L  AK     ++ + ++
Sbjct: 505 ILGAEDAMGDMDFKVAGTKDV-ITALQLDTKLDGIPASVLAGALKQAKGARLAILDVMQE 563

Query: 237 VISNE 241
            I + 
Sbjct: 564 AIDSP 568



 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 73/243 (30%), Gaps = 39/243 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKF-GDTHLL----TTATLEEKVPMWIRNTKHGWITAEYGM 65
           R I      +++ A GS +     DT +L     + T +E+   +             G 
Sbjct: 19  RTIRFETGRLARQAAGSAVAYLDSDTMVLSATTASKTPKEQFDFFPLTVDVEERMYAAGR 78

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q++     +  D   
Sbjct: 79  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFVKGLRNEIQVVATVMALNPDHLY 132

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A ++                      G +  +   ++ G  +    + E    
Sbjct: 133 DVVAINAASLSTQLAGL-------------PFSGPIGGVRVALIDGQWVAFPTHPELERA 179

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
             D              I+ V+  + + T           +++     L  AK  I  L 
Sbjct: 180 TFDMVVAGRVLDDGDVAIMMVEAESTKDTLKLVAEGAVAPTEETVAQGLEAAKPFIKVLC 239

Query: 232 KLQ 234
           + Q
Sbjct: 240 EAQ 242


>gi|255505938|ref|ZP_05349011.3| polyribonucleotide nucleotidyltransferase [Bryantella formatexigens
           DSM 14469]
 gi|255265001|gb|EET58206.1| polyribonucleotide nucleotidyltransferase [Bryantella formatexigens
           DSM 14469]
          Length = 689

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 87/250 (34%), Gaps = 28/250 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNTKHGWI 59
           R  GR  N++R ++    +     GS +   G T  + T T          I        
Sbjct: 306 RPDGRAINEIRPLAAEVDLIPRVHGSAMFTRGQTQ-ICTITTLAPLSEAQKIDGLDASET 364

Query: 60  TAEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  Y M   +  +    E    R  G R      +  RAL  V+         I    + 
Sbjct: 365 SKRY-MHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSEEEFPYAIRTVSET 423

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY------ 172
            +++G T  A+I  + ++L                   +K  VA ISCG++ G       
Sbjct: 424 FESNGSTSQASICASTMSLMAAGV-------------PIKTAVAGISCGLVTGETDDDYI 470

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    ++      +  A+ R A L  
Sbjct: 471 VLTDIQGLEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAI--ARTREARLY- 526

Query: 233 LQKDVISNEV 242
           +  +V++  +
Sbjct: 527 ILDEVMAKTI 536



 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 81/226 (35%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    V+K A G+ L+ +GDT +L+TAT      E +  +  + ++       G +
Sbjct: 6   RTLRVDVGRVAKQANGAVLMHYGDTTVLSTATASEKPREGIDFFPLSVEYEEKMYAVGKI 65

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 66  P---GGFNKRE---GKASENAVLTARVIDRPMRPLFPKDYRNDVTLDNLVLSVDPDCSPE 119

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  +    G++ G  + + +  + +  D
Sbjct: 120 LTAMLGSAIATV-------------ISDIPFDGPTSTTQVGLVNGEFVFNPNAAQKAVSD 166

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +D     +  A +   ++IK
Sbjct: 167 LQLTVASTRD-KVIMIEAGANEVP--EDKMIEAIFAAHEVNQEVIK 209


>gi|182414231|ref|YP_001819297.1| polyribonucleotide nucleotidyltransferase [Opitutus terrae PB90-1]
 gi|257096699|sp|B1ZS98|PNP_OPITP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|177841445|gb|ACB75697.1| Polyribonucleotide nucleotidyltransferase [Opitutus terrae PB90-1]
          Length = 730

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 86/249 (34%), Gaps = 33/249 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR +  +R +     V     GS + + GDT  +   TL         +   G + 
Sbjct: 315 VRADGRGQKDIRPLQAQVGVLPRVHGSAMFQRGDTQNIALTTLGPTKDAQDLDALTGGVK 374

Query: 61  -----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P S G   +      R+ G       +  R+L  V+    +    I + 
Sbjct: 375 SKSFLLHYNFPPFSVGETGRFTGPGRREIGHG----ALAERSLVPVLPPEDVFPYSIRVV 430

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            +++ ++G T  A+I G  ++L D                 +   VA ISCG++      
Sbjct: 431 SEIMASNGSTSMASICGGCLSLMDAGV-------------PIIAPVAGISCGLMTQNASD 477

Query: 174 --------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                   I D+   ED   D+D     T  G I   Q   +      +     +  A+D
Sbjct: 478 GSIEKWVTITDILGEEDHFGDMDFKLAGTSKG-ITGFQLDLKINGLPFEIAKTAIMQARD 536

Query: 226 RIADLIKLQ 234
              +++K+ 
Sbjct: 537 ARMEILKVM 545



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 86/234 (36%), Gaps = 31/234 (13%)

Query: 14  ISLTRRVSKY-AEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPR 68
           I+ +       A G+  V+ G+T++  TA +    +     +     +    A  G  P 
Sbjct: 14  ITFSTGSIAQLANGAVNVQVGETNVFVTACVAQTTKPGQDWFPLTVDYREKYAAAGRFP- 72

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KRE   GR   +     R+  R  R +     L   QII    +  AD    + 
Sbjct: 73  --GGYFKRE---GRPSEKEILTSRLCDRPCRPLFPEGFLNEVQII--GQLFSADLVNESD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
            + + GA  AL                     G +AA+    + G  + +    +     
Sbjct: 126 ISMVNGASAALA-------------ISDIPWNGPIAAVRVAEIEGKFVANPTIDQMFASS 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +D  +V  +   ++ ++GSA++    ++ F   L    + I  ++K  K++++ 
Sbjct: 173 LDLIYVGNEKD-MLMIEGSADQIP--EERFIEALAFGHESIQPILKAIKELVAQ 223


>gi|284992338|ref|YP_003410892.1| polyribonucleotide nucleotidyltransferase [Geodermatophilus
           obscurus DSM 43160]
 gi|284065583|gb|ADB76521.1| polyribonucleotide nucleotidyltransferase [Geodermatophilus
           obscurus DSM 43160]
          Length = 762

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 83/242 (34%), Gaps = 14/242 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R +S    V     GS L + G+T +L   TL     E+    +     
Sbjct: 353 VRIDGRGLTDIRPLSAEVEVLPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVNR 412

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 413 KRYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALLPVLPDREEFPYAIRQVS 468

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  + +AL +    +        +     G V+    G      + D
Sbjct: 469 EALGSNGSTSMGSVCASTLALLNAGVPLRAPVAGIAM-----GLVSDEVDGKTEYVALTD 523

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    +  +Q   +      D     L  A+     ++ +  +
Sbjct: 524 ILGAEDAFGDMDFKVAGTRDF-VTALQLDTKLDGIPSDVLAQALTQARAARLHILDVMNE 582

Query: 237 VI 238
            I
Sbjct: 583 AI 584



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 81/249 (32%), Gaps = 39/249 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R I+     ++K A GS +V  GDT LL+  T     +E    +             G +
Sbjct: 36  RTITFETGRLAKQAAGSVVVTMGDTMLLSATTAGRQPKEHFDFFPLTVDVEERMYAAGRI 95

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+  +RE   GR    +    R+I R LR           Q++I    +  D    
Sbjct: 96  P---GSFFRRE---GRPSEDAILTCRLIDRPLRPTFAKGLRNEVQVVITVLSLDPD---- 145

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                     L+D L      ++         G V      ++ G  +    + E     
Sbjct: 146 ---------HLYDVLAINGASASTQLSGLPFSGPVGGTRVALVNGQWVGFPTHAELEDAV 196

Query: 187 VDANF---VMTD-SGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
            D      V+ D    I+ V+  A   T           +++     L  AK  I  L +
Sbjct: 197 FDMVVAGRVLPDGDVAIMMVEAEATEKTIELVAGGATAPTEEVVAQGLEAAKPFIKALCE 256

Query: 233 LQKDVISNE 241
            Q   ++ +
Sbjct: 257 AQ-SALAEK 264


>gi|186683767|ref|YP_001866963.1| polynucleotide phosphorylase/polyadenylase [Nostoc punctiforme PCC
           73102]
 gi|226702669|sp|B2J2V3|PNP_NOSP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|186466219|gb|ACC82020.1| 3' exoribonuclease [Nostoc punctiforme PCC 73102]
          Length = 718

 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 91/244 (37%), Gaps = 28/244 (11%)

Query: 1   MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNT 54
           +R+ GR+ +++R +S    V  K   GS L     T +L+T TL            ++  
Sbjct: 322 VRVDGRKLDEVRRVSCLVGVLPKRVHGSGLFNRELTQVLSTCTLGTPGDAQNLNDDMQLD 381

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +H      Y   P S G      +   R+ G       +  R+L  V+         I I
Sbjct: 382 QHKRYLHHYNFPPFSVGETKPMRSPGRREIGHG----ALAERSLIPVLPSKEQFPYVIRI 437

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V+ ++G T   ++ G+ +AL D                 +   V+  + G++     
Sbjct: 438 VSEVLSSNGSTSMGSVCGSTLALMDAGV-------------PILKPVSGAAMGLIKDGDE 484

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     TD+G I  +Q   +    S D     ++ AK     +
Sbjct: 485 VRILTDIQGIEDFLGDMDFKVAGTDTG-ITALQMDMKIPGLSLDVISQAVHQAKAARLHI 543

Query: 231 IKLQ 234
           ++  
Sbjct: 544 LEKM 547



 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 26/233 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           R+I L   +    A GS L++ GDT +L TAT     E +        +       G +P
Sbjct: 13  RDIRLKVGLLAPQAGGSVLIESGDTSVLVTATRSQAREGIDFLPLTVDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   GR   ++    R+I R +R +         QII     +        
Sbjct: 73  ---GGIMRRE---GRPPEKTILTSRLIDRPMRPLFPSWLRDDLQIIALTLSMDELVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA +A                      G +AA+  G++    I++  Y E    D+
Sbjct: 127 LAVTGASIATLIAQI-------------PFNGPMAAVRVGLVGDDFIINPTYAEIEAGDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     +  G ++ V+  A +    +      ++   + + DLIK Q+D+++ 
Sbjct: 174 DLVVAGSPHG-VIMVEAGANQ--LPERDIIEAIDFGYEAVRDLIKAQQDLVAE 223


>gi|30794378|ref|NP_082550.1| exosome complex component MTR3 [Mus musculus]
 gi|81875189|sp|Q8BTW3|EXOS6_MOUSE RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
           component 6; AltName: Full=mRNA transport regulator 3
           homolog
 gi|26353554|dbj|BAC40407.1| unnamed protein product [Mus musculus]
 gi|109734233|gb|AAI16986.1| Exosome component 6 [Mus musculus]
 gi|111599953|gb|AAI19083.1| Exosome component 6 [Mus musculus]
          Length = 273

 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 75/249 (30%), Gaps = 35/249 (14%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---------- 55
           R   ++R +     +   A+GS  ++ G T +L   +   +     R +           
Sbjct: 31  RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGSGPAGAGGEAPA 90

Query: 56  --HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
              G +  ++   P S   R +R    G  GG  +E+   +  AL   V L      Q+ 
Sbjct: 91  ALRGRLLCDFRRAPFS--GRRRRAPQGG--GGEDRELGLALQEALEPAVRLGRYPRAQLE 146

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-- 171
           +   +++ DGG                                +   V      +  G  
Sbjct: 147 VSALLLE-DGG------------CALAAALTAAALALADAGVEMYDLVVGCGLSLTPGPS 193

Query: 172 -YPIVDLD-YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
              ++D     E+ +       +M     +  + GS E      + +   + L  +    
Sbjct: 194 PTWLLDPTRLEEEHSAAGLTVALMPVLNQVAGLLGSGEGGQ--TESWTDAVRLGLEGCQR 251

Query: 230 LIKLQKDVI 238
           L  + +  +
Sbjct: 252 LYPVLQQCL 260


>gi|225460698|ref|XP_002270464.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 467

 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 95/262 (36%), Gaps = 33/262 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR+    R IS+        +GS  V+ G TH++   T +  +  +      G ++
Sbjct: 27  LRIDGRRPFDFRRISIKFG---REDGSSEVQLGQTHVMGFVTGQL-IQPYRDRPNEGTLS 82

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALG------SRQI 112
                 P +  +       +GR G  + E+ R+I R LR    VD+ +L          I
Sbjct: 83  IYTEFSPMADPS-----FEAGRPGEAAVELGRVIDRGLRESRAVDMESLCVLAGKLVWSI 137

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN-------------KFQLSQVLKG 159
            ID  +I   G    AA   A  AL    +                    +  L  ++  
Sbjct: 138 RIDLHIIDNGGNLIDAANIAALAALLTFRRPECSFGGEDGQELIVHPPEVREPLPLIVHH 197

Query: 160 HVAAISCGMLCGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
              A++  ++      ++D  + E++ +       +  +G +  +Q +       Q    
Sbjct: 198 LPIAVTFAIIGNENIMVIDPTHSEEAVMGGRMTATLNTNGDVCAIQKAGGEGII-QSVIM 256

Query: 218 AMLNLAKDRIADLIKLQKDVIS 239
             L +A  + AD+    K+ + 
Sbjct: 257 QCLRIASVKAADITSKIKNAVE 278


>gi|126660748|ref|ZP_01731846.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. CCY0110]
 gi|126617989|gb|EAZ88760.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. CCY0110]
          Length = 715

 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 89/227 (39%), Gaps = 26/227 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           R+I L   +    A G+ L++ GDT +L TAT     E +        +       G +P
Sbjct: 13  RDIRLKLGLLAPQAGGAVLIQSGDTAVLVTATTSKGREGIDFLPLTVDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   GR   R+  I R+I R LR +         QII     +  +     
Sbjct: 73  ---GGFLRRE---GRPPERAILISRLIDRPLRPLFPNWWRDEIQIIATTLSMDEEVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA +A+                     G +AA+  G++    I++  Y E  + D+
Sbjct: 127 LAVTGASIAVIQAQI-------------PFYGPMAAVRVGLIGDDFIINPTYREVESGDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D     +  G +V V+  A +    +      ++   + + DLI  Q
Sbjct: 174 DLVVAGSPDG-VVMVEAGANQ--LPEQDIIEAIDFGYEAVRDLIGAQ 217



 Score = 82.4 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 81/233 (34%), Gaps = 28/233 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----T 54
           +R+ GR+ +++R IS    +      GS L   G T + + ATL                
Sbjct: 323 IRVDGRKLDEVRPISCRVGLLPPRVHGSALFTRGLTQVFSLATLGTPGDAQDLGDDLHPE 382

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y   P S G      +   R+ G       +  RA+  V+         + +
Sbjct: 383 DEKRYLHHYNFPPFSVGETKPLRSPGRREIGHG----ALAERAITPVLPPQDEFPYVVRV 438

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V+ ++G T   ++ G+ +AL D                 +   V+  + G++     
Sbjct: 439 VSEVVSSNGSTSMGSVCGSTLALMDAGV-------------PITKPVSGAAMGLIREGKE 485

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
              + D+   ED   D+D     TD+G I  +Q   +    S D     +  A
Sbjct: 486 VRILTDIQGIEDFLGDMDFKVAGTDAG-ITALQMDMKITGLSMDVVAKAIEQA 537


>gi|54025857|ref|YP_120099.1| polynucleotide phosphorylase/polyadenylase [Nocardia farcinica IFM
           10152]
 gi|81374135|sp|Q5YSV6|PNP_NOCFA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|54017365|dbj|BAD58735.1| putative guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Nocardia farcinica IFM 10152]
          Length = 764

 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 86/246 (34%), Gaps = 11/246 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TT----ATLEEKVPMWIRNTK 55
            R+ GR    +R +S    V   A GS L + G+T +L  T      + ++V      T 
Sbjct: 360 FRIDGRGLADIRALSAEVAVVPRAHGSALFERGETQILGVTTLDMVKMAQQVDSLGPETS 419

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 420 KRYMH-HYNFPPFSTGETGRVGSPKRREIGHG----ALAERALIPVLPSQEDFPYAIRQV 474

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            + + ++G T   ++  + ++L +    ++       +  V            +    + 
Sbjct: 475 SEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLVSDTVTNDKGEQEVRYVALT 534

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED+  D+D     T    +  +Q   +            L+ A D    ++ +  
Sbjct: 535 DILGAEDAFGDMDFKVAGTREF-VTALQLDTKLDGIPSQVLAGALSQAHDARTTILDVMA 593

Query: 236 DVISNE 241
           + I+  
Sbjct: 594 EAIATP 599



 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 78/242 (32%), Gaps = 24/242 (9%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM-----WIRNTKHGWITAEYGM 65
           R +      +++ A GS +    D  +L +AT   K P      +             G 
Sbjct: 33  RTVRFETGRLARQAAGSVVAYLDDETMLLSATTAGKTPKDQFDFFPLTVDVEERMYAAGR 92

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q+++    +      
Sbjct: 93  IP---GSFFRRE---GRPSTDAILTCRLIDRPLRPSFVDGLRNEVQVVVTVLSLDPKDLY 146

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--------IVDL 177
              AI  A  +               +++ +      +   G    +P        + D+
Sbjct: 147 DVVAINAASASTQIAGLPFSGPVGGVRVALIPDQGANSAGGGQWVAFPTVEQLEGAVFDM 206

Query: 178 DYGEDSTIDVDANFVMTDS---GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
                     D   +M ++     ++E+     +A  ++      L  AK  IA L + Q
Sbjct: 207 VVAGRVVESGDVAIMMVEAEATEKVIELVEGGAQAP-TEAVVAEGLEAAKPFIARLCRAQ 265

Query: 235 KD 236
           +D
Sbjct: 266 QD 267


>gi|217034082|ref|ZP_03439503.1| hypothetical protein HP9810_893g29 [Helicobacter pylori 98-10]
 gi|216943477|gb|EEC22931.1| hypothetical protein HP9810_893g29 [Helicobacter pylori 98-10]
          Length = 688

 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 87/249 (34%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------------TLEEKVP 48
           +R   R   ++R I +   +   A  S L   G T  L               +LE K P
Sbjct: 313 IRPDKRALEEVRPILIESGLLPMAHSSILFTRGQTQSLVVGVLGADNDAQTHESLEHKAP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGATSRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK    
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEVLYQALLQAKKARE 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 72/218 (33%), Gaps = 30/218 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S + + G T +L +   E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLMYRLGKTIILASVCTERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
                         +  F         V+A     +    I++ +    +   +D     
Sbjct: 122 ----LQVSALNAASAALFLSHIAPIKSVSACRIARIDNEFIINPNTSLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEVQGSAER-ATFSQDHFFAMLNLAKDRIAD 229
           T +S +++E+    ++     +      L LA+  + +
Sbjct: 178 TKESLNMIEMHSLGQKLNALEEPLMLKALELAQKSLKE 215


>gi|308183320|ref|YP_003927447.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           PeCan4]
 gi|308065505|gb|ADO07397.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           PeCan4]
          Length = 688

 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 88/249 (35%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------------TLEEKVP 48
           +R   R   ++R IS+   +   A  S L   G T  L               +LE K P
Sbjct: 313 IRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKTP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGATSRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDHAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK    
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNVEG-ITAMQMDTKMSGIQLEVLYQALLQAKRARK 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 78/230 (33%), Gaps = 38/230 (16%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S + + G T +L +  +E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLMYRLGKTIILASVCVERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
              L     +    +        +K  V+A     +    I++      +   +D     
Sbjct: 122 ---LQVSALNAASAALFLAHIAPIK-SVSACRIAKMDNEFIINPSASLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEV-----QGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           T +S +++E+     Q +A             L LA+  + +   L ++ 
Sbjct: 178 TKESLNMIEMRSLGQQLNALEEPL----MLEALELAQKSLKETCTLYEEA 223


>gi|322392303|ref|ZP_08065764.1| polyribonucleotide nucleotidyltransferase [Streptococcus peroris
           ATCC 700780]
 gi|321144838|gb|EFX40238.1| polyribonucleotide nucleotidyltransferase [Streptococcus peroris
           ATCC 700780]
          Length = 751

 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 334 VRPDGRKVDEIRPLDAGVDFVPRVHGSGLFTRGQTQALSILTLAPMGETQIIDGLDPEYK 393

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G   +     G  G R      +  RAL  V+         I +  
Sbjct: 394 KRFMHHYNFPQYSVGETGR----YGAPGRREIGHGALGERALAQVLPSLEEFPYAIRLVA 449

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A+I    +AL                   +K  VA I+ G++       
Sbjct: 450 EVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAGIAMGLISDGNNYT 496

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T  G I  +Q   +    + +     L  AK    +++ 
Sbjct: 497 VLTDIQGLEDHFGDMDFKVAGTRDG-ITALQMDIKIQGITAEILAEALAQAKKARFEILD 555

Query: 233 LQKDVI 238
           + +  I
Sbjct: 556 VIEATI 561



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK---VPMWIRNTKHGWITAEYGMLP 67
           RE+ +    V+K A GS +V++G++ +LT A + +K      +     +       G  P
Sbjct: 30  RELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATGDFFPLQVNYEEKMYAAGKFP 89

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR    +    R+I R +R +         Q+I        +     
Sbjct: 90  ---GGFMKRE---GRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPM 143

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AA+ G+ +AL                     G +A +  G + G  I++    +     +
Sbjct: 144 AAMFGSSLALS-------------ISDIPFDGPIAGVQVGYVDGQIIINPTQEQAEQSLL 190

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +     T    I  V+  A+    S++     L    + + +LI  Q+++++
Sbjct: 191 ELTVAGTKHA-INMVESGAKE--LSEEIMLQALLKGHEAVKELIAFQEEIVA 239


>gi|315104236|gb|EFT76212.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL050PA2]
          Length = 733

 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 85/246 (34%), Gaps = 15/246 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNTK 55
           +R+ GR    +R +S    +     GS L + G+T +L   +    + M      +    
Sbjct: 339 VRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL-GVSTLNMLDMEQKLDTLSPEN 397

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y M P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 398 TRRYMHNYNMPPYSTGETGRVGSPKRREIGHG----NLAERALIPVLPTREEFPYAIREV 453

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            + I ++G T   ++  + +AL +    +        +  + +        G      + 
Sbjct: 454 SEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSETD----EDGKTKYRALT 509

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED+  D+D     T    +  +Q   +      D     L  AK+    ++++  
Sbjct: 510 DILGAEDALGDMDFKVAGTSEF-VTALQLDTKLDGIPADVLAGALKQAKEARTAILEVMN 568

Query: 236 DVISNE 241
           + I + 
Sbjct: 569 EAIDSP 574



 Score = 59.0 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 73/249 (29%), Gaps = 40/249 (16%)

Query: 14  ISLTRRVS-KYAEGSCLVKF-GDTHLL----TTATLEEKVPMWIRNTKHGWITAEYGMLP 67
           +     +  + A+GS  V   GDT LL       T  + +  +             G +P
Sbjct: 23  VRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRIP 82

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G+  +RE   GR    +    R+I R LR           Q+++    +        
Sbjct: 83  ---GSFFRRE---GRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDV 136

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AI  A ++                      G V  +   ++    +      +      
Sbjct: 137 VAINSASMSTQLAGL-------------PFSGPVGGVRMALIDDQWVCFPSVDQRKESTF 183

Query: 188 DANFV----MTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKL 233
           D              I+ V+  +  AT+          +++     L  AK  I  L   
Sbjct: 184 DMVVAGRALADGDVAIMMVEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDA 243

Query: 234 QKDVISNEV 242
           Q   ++ ++
Sbjct: 244 Q-VALAAKL 251


>gi|282854618|ref|ZP_06263953.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium acnes J139]
 gi|282582200|gb|EFB87582.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium acnes J139]
 gi|314923878|gb|EFS87709.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL001PA1]
 gi|314966065|gb|EFT10164.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL082PA2]
 gi|314981898|gb|EFT25991.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL110PA3]
 gi|315090762|gb|EFT62738.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL110PA4]
 gi|315095011|gb|EFT66987.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL060PA1]
 gi|327328056|gb|EGE69825.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL103PA1]
          Length = 733

 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 85/246 (34%), Gaps = 15/246 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNTK 55
           +R+ GR    +R +S    +     GS L + G+T +L   +    + M      +    
Sbjct: 339 VRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL-GVSTLNMLDMEQKLDTLSPEN 397

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y M P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 398 TRRYMHNYNMPPYSTGETGRVGSPKRREIGHG----NLAERALIPVLPTREEFPYAIREV 453

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            + I ++G T   ++  + +AL +    +        +  + +        G      + 
Sbjct: 454 SEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMGLMSETD----EDGKTKYRALT 509

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED+  D+D     T    +  +Q   +      D     L  AK+    ++++  
Sbjct: 510 DILGAEDALGDMDFKVAGTSEF-VTALQLDTKLDGIPADVLAGALKQAKEARTAILEVMN 568

Query: 236 DVISNE 241
           + I + 
Sbjct: 569 EAIDSP 574



 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 73/249 (29%), Gaps = 40/249 (16%)

Query: 14  ISLTRRVS-KYAEGSCLVKF-GDTHLL----TTATLEEKVPMWIRNTKHGWITAEYGMLP 67
           +     +  + A+GS  V   GDT LL       T  + +  +             G +P
Sbjct: 23  VRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRIP 82

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G+  +RE   GR    +    R+I R LR           Q+++    +        
Sbjct: 83  ---GSFFRRE---GRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDV 136

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AI  A ++                      G V  +   ++    +      +      
Sbjct: 137 VAINAASMSTQLAGL-------------PFSGPVGGVRMALIDDQWVCFPSVDQRKESTF 183

Query: 188 DANFV----MTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKL 233
           D              I+ V+  +  AT+          +++     L  AK  I  L   
Sbjct: 184 DMVVAGRALADGDVAIMMVEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDA 243

Query: 234 QKDVISNEV 242
           Q   ++ ++
Sbjct: 244 Q-VALAAKL 251


>gi|312090436|ref|XP_003146614.1| 3' exoribonuclease [Loa loa]
 gi|307758222|gb|EFO17456.1| 3' exoribonuclease [Loa loa]
          Length = 634

 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 78/236 (33%), Gaps = 54/236 (22%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ +++R + +   V K   GS L + G T + +T T +     +           
Sbjct: 284 RCDGRKFDELRPVDIKMDVHKKLHGSALFQRGQTQVFSTVTFDAPSAAF----------- 332

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
                               +    SQ               L       + + CDV+++
Sbjct: 333 --------------------QPDALSQ--------------LLEDFP-YCLRLACDVLES 357

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           +G +  A++    +AL D    M+  +    +  ++                + D++  E
Sbjct: 358 NGSSSMASVCAGCLALLDAGVQMKTPAAGVAMGLIIDKERNDY-------RILTDINGLE 410

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           D   D+D     T  G+   +Q   +      +     L  A++ +  L++L +  
Sbjct: 411 DFAGDMDFKIAGTVRGY-TAMQLDLKVPGIKPEVMMESLEQARNGLEHLLQLMRKA 465



 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 21/205 (10%)

Query: 36  HLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRM 93
            +L T                  +T ++     + G R+    +         +I   RM
Sbjct: 3   QVLATVVGRHSSTS--DTADFMPLTVDFQQSASAVG-RIPTNYLRRELQRNDADILASRM 59

Query: 94  IGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL 153
           I R++R +      G  QII     +  DG      +  A  AL                
Sbjct: 60  IDRSIRPLFPKDYSGETQIICKPLAVDDDGDPVMLGLNAASAAL-------------TLS 106

Query: 154 SQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG-HIVEVQGSAERATFS 212
               +G + A+   ++    +V+          +D      D G  I+ +          
Sbjct: 107 DIPWEGPLGAVRIALINNEIVVNPSRKNMKISSLDLVIAACDDGNRILMIDMDGCETGI- 165

Query: 213 QDHFFAMLNLAKDRIADLIKLQKDV 237
            + F A +      I+ LI+    V
Sbjct: 166 -EKFAACIETGLQAISYLIQAINKV 189


>gi|253580814|ref|ZP_04858077.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847884|gb|EES75851.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 697

 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 73/231 (31%), Gaps = 31/231 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   Q+R ++    +     GS +   G T  + T T    +    +         
Sbjct: 312 RPDGRAITQIRPLAAETDIIPRVHGSAMFTRGQTQ-ICTITTLAPLAEAQKLDGLDEFET 370

Query: 62  E------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G          R+ G       +  RAL  V+         I   
Sbjct: 371 SKRYMHHYNFPSYSVGETKPSRGPGRREIGHG----ALAERALVPVLPSEEEFPYAIRTV 426

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            +  +++G T  A+I  + ++L                   +K  VA ISCG++ G    
Sbjct: 427 SETFESNGSTSQASICASTMSLMAAGV-------------PIKKPVAGISCGLVTGDTDD 473

Query: 173 ---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
               + D+   ED   D+D     T  G I  +Q   +    ++      +
Sbjct: 474 DYIVLTDIQGLEDFFGDMDFKVAGTHDG-ITAIQMDIKIHGLTRPIVEEAI 523



 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 83/226 (36%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+K A G+ L+ +GDT +L+TAT      E +  +  + ++       G +
Sbjct: 12  RTLTVDINRVAKQANGAALMHYGDTTVLSTATASKEPREGIDFFPLSVEYEEKMYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          ++     +  +    
Sbjct: 72  P---GGFNKRE---GKASEHAILTSRVIDRPMRPLFPKDYRNDVTLVNMVMSVDPECNPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  A    G++ G  I++    +    D
Sbjct: 126 IPAMLGSSIA-------------TCISDIPFDGPCATTQVGLINGEYIINPTMAQKDVSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A+     +D     +  A +   ++IK
Sbjct: 173 LQLTVASTRE-KVIMIEAGAKEVP--EDKMIEAIYKAHEVNQEIIK 215


>gi|332675901|gb|AEE72717.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           266]
          Length = 749

 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 85/250 (34%), Gaps = 23/250 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNTK 55
           +R+ GR    +R +S    +     GS L + G+T +L   +    + M      +    
Sbjct: 355 VRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL-GVSTLNMLDMEQKLDTLSPEN 413

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y M P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 414 TRRYMHNYNMPPYSTGETGRVGSPKRREIGHG----NLAERALIPVLPTREEFPYAIREV 469

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            + I ++G T   ++  + +AL +    +        +          +S     G    
Sbjct: 470 SEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMG--------LMSETDEDGKTKY 521

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED+  D+D     T    +  +Q   +      D     L  AK+    ++
Sbjct: 522 LALTDILGAEDALGDMDFKVAGTSEF-VTALQLDTKLDGIPADVLAGALKQAKEARTAIL 580

Query: 232 KLQKDVISNE 241
           ++  + I + 
Sbjct: 581 EVMNEAIDSP 590



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 73/249 (29%), Gaps = 40/249 (16%)

Query: 14  ISLTRRVS-KYAEGSCLVKF-GDTHLL----TTATLEEKVPMWIRNTKHGWITAEYGMLP 67
           +     +  + A+GS  V   GDT LL       T  + +  +             G +P
Sbjct: 39  VRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRIP 98

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G+  +RE   GR    +    R+I R LR           Q+++    +        
Sbjct: 99  ---GSFFRRE---GRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDV 152

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AI  A ++                      G +  +   ++    +      +      
Sbjct: 153 VAINAASMSTQLAGL-------------PFSGPIGGVRMALIDDQWVCFPSVDQRKESTF 199

Query: 188 DANFV----MTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKL 233
           D              I+ V+  +  AT+          +++     L  AK  I  L   
Sbjct: 200 DMVVAGRVLADGDVAIMMVEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDA 259

Query: 234 QKDVISNEV 242
           Q   ++ ++
Sbjct: 260 Q-VALAAKL 267


>gi|332881702|ref|ZP_08449350.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332680341|gb|EGJ53290.1| polyribonucleotide nucleotidyltransferase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 742

 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 84/240 (35%), Gaps = 30/240 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           RL GR    +R I           GS +   G+T  L+T T    L+EK+   + +    
Sbjct: 325 RLDGRATTDIRPIWCEVSPLPGPHGSAIFTRGETQSLSTCTLGTKLDEKIIDEVLDQSKM 384

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  R L+  +         + +  D
Sbjct: 385 RFLLHYNFPPFSTGEAKAQRGVGRREIGHGH----LAWRGLKGQIPTDF--PYTVRVVSD 438

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------ 171
           +++++G +  A +    +AL D    M             K  V+ I+ G++        
Sbjct: 439 ILESNGSSSMATVCAGTLALMDAGVPM-------------KKPVSGIAMGLIKNPGEEKY 485

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED   D+D     T  G +   Q   +    S +     L  AK     ++
Sbjct: 486 AVLSDILGDEDHLGDMDFKTTGTIDG-LTATQMDIKCDGLSYEILEKALMQAKAGREHIL 544



 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 91/241 (37%), Gaps = 37/241 (15%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVP---MWIRNTKHG 57
             GR       IS+      K A+G+ ++  G+T LL T    ++ VP         ++ 
Sbjct: 11  PDGRT------ISIETGKLAKQADGAVMLTMGNTMLLATVCAAKDAVPGTDFMPLQVEYR 64

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
              A  G  P   G   KRE   G+         R++ RALR +   +        +  +
Sbjct: 65  EKFAAAGRFP---GGFTKRE---GKASDYEILTCRLVDRALRPLFPSNYHAE----VYVN 114

Query: 118 VI--QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
           VI   ADG           V + D L      +         +G ++ +    + G  +V
Sbjct: 115 VILYSADG-----------VDMPDALAGFAASAALAVSDIPFEGPISEVRVARVNGEYVV 163

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           +  + +    D+D     T+  +I+ V+G  E    ++      L +A + I  + +LQK
Sbjct: 164 NPTFAQLEQADMDIMVGATEE-NIMMVEG--EMKEVTEQDLLNALKVAHEAIKPMCRLQK 220

Query: 236 D 236
           +
Sbjct: 221 E 221


>gi|289740851|gb|ADD19173.1| exosomal 3'-5' exoribonuclease complex subunit Rrp45 [Glossina
           morsitans morsitans]
          Length = 404

 Score = 92.8 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 87/261 (33%), Gaps = 32/261 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           RL GR  ++ R + +       ++ GS +V  G+T +L   + E   P   R    G + 
Sbjct: 23  RLDGRNNDEFRSLRINYG----SDWGSVIVALGETKVLGQVSSELGEPKATR-PNEGILH 77

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALG----SR--QI 112
               + P +          +GR    + +I R + R  +    +DL +L      R   +
Sbjct: 78  INVELGPMAAA-----HFEAGRNCELTVQINRTLERTFKDSRAIDLESLCVISEERVWML 132

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVA 162
            +D +V+  +G            AL    +           +   + K  L  V+  +  
Sbjct: 133 RVDLNVLNHEGNLIDCCSVATLCALAHFRRPDVSVIEDEIRIHTSAEKEPLKMVMHHYPV 192

Query: 163 AISCGMLCGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
            +S  +  G    + D    E+   D    F +   G +  +       T S        
Sbjct: 193 CVSYVIFDGGRIAVADPTVAEERISDTQMIFGINSFGELCCLNLGGSSLT-SPTLLLQCS 251

Query: 221 NLAKDRIADLIKLQKDVISNE 241
             A      ++K  K  + N+
Sbjct: 252 KKAAKHAKSVVKQVKQSLEND 272


>gi|281202081|gb|EFA76286.1| hypothetical protein PPL_10049 [Polysphondylium pallidum PN500]
          Length = 1016

 Score = 92.8 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 77/245 (31%), Gaps = 27/245 (11%)

Query: 1    MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            +R  GR     R   L      +A GS  +   +TH+L     +   P   +    G + 
Sbjct: 775  VRSDGRSRLDYRHFELDVGEIAHACGSARILLSNTHVLVGIKADIGAPTTDK-PNSGVLN 833

Query: 61   AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL----GSR--QIII 114
                  P ++     + A        + E+ + + R L + +DL +L    G     + I
Sbjct: 834  YSVECCPSASPEFEGKGAEQ-----LNIELAKQLERMLENSLDLESLVIVPGRYCWNLHI 888

Query: 115  DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL--------------SQVLKGH 160
            D  V+ +DG    A       AL +                            S  ++  
Sbjct: 889  DATVLDSDGNLFDALSIVTRAALFNTRLPTIKVVQGEHEQIEFEVSEDSDTYQSLSIENV 948

Query: 161  VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
               ++   +    ++D    E+  ++      +    +I  +Q          +    M+
Sbjct: 949  PICVTLTKVGTQFLIDSTLEEELCMEARLTIGINKKSNICSIQKGGMNG-LDANTVNQMI 1007

Query: 221  NLAKD 225
            N+AK 
Sbjct: 1008 NVAKQ 1012


>gi|156320322|ref|XP_001618165.1| hypothetical protein NEMVEDRAFT_v1g225439 [Nematostella vectensis]
 gi|156197791|gb|EDO26065.1| predicted protein [Nematostella vectensis]
          Length = 122

 Score = 92.8 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 17/125 (13%)

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+QADGG   A I    +AL +                 LK +V+A +   +   P++D+
Sbjct: 1   VLQADGGNHVACINAVTLALINAGI-------------PLKDYVSACTVSFVNDTPLMDI 47

Query: 178 DYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +Y E+ST        ++  S  IV  Q  +       D+   +L LA     D+  L   
Sbjct: 48  NYLEESTGGPQLTLAILPKSDKIVLFQMDSR---LHMDNMDKVLALAMKGCKDIYVLLHR 104

Query: 237 VISNE 241
            I  +
Sbjct: 105 TILED 109


>gi|156389595|ref|XP_001635076.1| predicted protein [Nematostella vectensis]
 gi|156222166|gb|EDO43013.1| predicted protein [Nematostella vectensis]
          Length = 232

 Score = 92.8 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 83/234 (35%), Gaps = 29/234 (12%)

Query: 10  QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
           ++R +     +   A+GS     GDT ++  A    +V +               ++ R+
Sbjct: 14  ELRAMFCEHGLLDKADGSSKFAQGDTQVMAAAYGPVEVKLNK------------ELIDRA 61

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
           T   + R  + G  G   + ++ +I  +   +V  +      + I   V+Q  G   + A
Sbjct: 62  TLEVIFRPKI-GIPGCSEKLVEGIIRNSCEPIVLTALHPRASLTIVVQVVQNSGSLLSCA 120

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDSTIDVD 188
           +  A +A+ D    M             +  +  I+C +      ++D    ++      
Sbjct: 121 VNAACLAMMDAGFPM-------------RCMMCGITCAITEQDELVLDPTLEQERKATAV 167

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
             FV       +    +  + +F  D +   L  +K  + +++   +  +  ++
Sbjct: 168 LTFVFDSVNQNLLTSST--KGSFDVDQYNKCLAASKAAMGNILAFYRQSVERKL 219


>gi|260905182|ref|ZP_05913504.1| polynucleotide phosphorylase/polyadenylase [Brevibacterium linens
           BL2]
          Length = 740

 Score = 92.8 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 85/243 (34%), Gaps = 12/243 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R ++    V   A GS + + G+T +L   TL     E+    +     
Sbjct: 337 IRIDGRGLKDIRPLTAETNVIPRAHGSAIFERGETQILGVTTLNMLKLEQHIDSLSPVTT 396

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  +   R+ G       +  RAL  V+         I    
Sbjct: 397 KRYMHHYNFPPYSVGETGRVGSPKRREIGHG----ALAERALVPVLPKREDFPYAIREVS 452

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV- 175
           + + ++G T   ++  + +A+      ++       +   L   V +   G    Y  + 
Sbjct: 453 EALGSNGSTSMGSVCASTLAMLSAGVPLQAPVAGIAMG--LVSDVISTDTGDQTAYAALT 510

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED+  D+D     T    I  +Q   +          A L  A++    ++ +  
Sbjct: 511 DILGAEDAFGDMDFKVAGTRDF-ITAIQLDTKLDGLPASVLGAALKQAQEARMVILDVIA 569

Query: 236 DVI 238
           + I
Sbjct: 570 EAI 572



 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 76/242 (31%), Gaps = 38/242 (15%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT-----LEEKVPMWIRNTKHGWITAEYGMLP 67
           I      +++ A GS +    D  +L +AT       E    +             G +P
Sbjct: 22  IRFETGRLAQQAAGSAVAYLDDETMLFSATSAGKNPREGFDFFPLTVDVEERMYAAGRIP 81

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G+  +RE   GR    +    R+I R LR           Q+++    I  D     
Sbjct: 82  ---GSFFRRE---GRPSTDAVLTCRLIDRPLRPSFVKGLRNEVQVVVTVMSIHPD----- 130

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                    ++D L       +         G +  +   ++    +   ++ +      
Sbjct: 131 --------HIYDALAINAASMSTQLSGLPFSGPIGGVRIALIDDQWVAFPNHSQLDDAVF 182

Query: 188 DANF---VMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQ 234
           +      V+ D   I+ V+  A               +++     L  AK  I++L + Q
Sbjct: 183 NMVVAGRVVGDDVAIMMVEAEATDNAIDRIKTGATAPTEEVVAEGLEAAKPFISELCRAQ 242

Query: 235 KD 236
           ++
Sbjct: 243 QE 244


>gi|332674015|gb|AEE70832.1| polyribonucleotide nucleotidyltransferase [Helicobacter pylori 83]
          Length = 688

 Score = 92.8 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 87/249 (34%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------------TLEEKVP 48
           +R   R   ++R I +   +   A  S L   G T  L               +LE K P
Sbjct: 313 IRPDKRALEEVRPILIESGLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGATSRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDRAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK    
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEVLYQALLQAKKARE 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 72/218 (33%), Gaps = 30/218 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S L + G T +L +   E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLLYRLGKTIILASVCTERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
                         +  F         V+A     +    I++      +   +D     
Sbjct: 122 ----LQVSALNAASAALFLSHIAPIKSVSACRIARIDNEFIINPSTSLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEVQGSAER-ATFSQDHFFAMLNLAKDRIAD 229
           T +S +++E++   ++     +      L LA+  + +
Sbjct: 178 TKESLNMMEMRSLGQKLNALEEPLMLKALELAQKSLKE 215


>gi|295092781|emb|CBK78888.1| polyribonucleotide nucleotidyltransferase [Clostridium cf.
           saccharolyticum K10]
          Length = 703

 Score = 92.8 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 89/254 (35%), Gaps = 34/254 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT-ATLEE--KVPMWIRNTKH 56
           R  GR   ++R ++    +     GS +   G T +L   T A L E  K+     N   
Sbjct: 312 RPDGRGITEIRPLAAEIDLLPRVHGSGMFTRGQTQILNICTLAPLSEAQKLDGLDENETS 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         I    
Sbjct: 372 KRYMHHYNFPSYSVGETKPSRGPGRREIGHG----ALAERALIPVLPSEEEFPYAIRTVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + ++++G T  A+I  + ++L                   +K  VA ISCG++ G     
Sbjct: 428 ETMESNGSTSQASICASTLSLMAAGV-------------PIKAPVAGISCGLVTGDTDDD 474

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G I  +Q   +    ++      +  AK R A L
Sbjct: 475 YIVLTDIQGLEDFFGDMDFKVGGTYKG-ITSIQMDIKIHGLTRPIIEEAI--AKTREARL 531

Query: 231 I---KLQKDVISNE 241
               ++ K VI+  
Sbjct: 532 YILDEIMKPVIAEP 545



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 78/226 (34%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+  A G+  + +GDT +L+TAT      E +  +  + +        G +
Sbjct: 12  RTLTVDVGRVAAQANGAAFMHYGDTTVLSTATASDKPREGIDFFPLSVEFEEKMYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 72  P---GGFNKRE---GKASENAVLTARVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  A    GM+ G  IV+    +    D
Sbjct: 126 YTAMLGSAIA-------------TCISDIPFDGPCATTQIGMIDGEFIVNPTSAQRKVSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +D     +  A +   ++IK
Sbjct: 173 MALTVASTRE-KVIMIEAGANEVP--EDVMIQAIFKAHEVNQEIIK 215


>gi|227542327|ref|ZP_03972376.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181927|gb|EEI62899.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 749

 Score = 92.8 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 90/245 (36%), Gaps = 14/245 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
            R+ GR   Q+R++S+   +   A GS L + G+T +L   TL+    E+    +     
Sbjct: 364 FRIDGRDVKQIRDLSVEVELVPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLSPVTS 423

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 424 KRYIHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERALLPVIPSKEEFPYAIRQVS 479

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  + ++L +    ++       +     G V+    G +    + D
Sbjct: 480 EALGSNGSTSMGSVCASTLSLLNAGVPLKAPVTGIAM-----GLVSDKIDGKMHYTALTD 534

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    +  +Q   +      +   A L  A +   +++     
Sbjct: 535 ILGAEDAFGDMDFKVAGTSEI-VTALQLDTKLDGIPSNVLAAALQQAHEARLEILDTMAQ 593

Query: 237 VISNE 241
           VI   
Sbjct: 594 VIEEP 598



 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 73/251 (29%), Gaps = 42/251 (16%)

Query: 12  REISLTRR-VSKYAEGSC---LVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEY 63
           R I      +++ A+GS    L +  DT +L T T      E    +             
Sbjct: 33  RTIRFETGQLARQADGSVTAYLDE--DTMMLATTTASNNPREGFDFFPLTVDVEERMYAK 90

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           G +P   G+  +RE   GR    +    R+I R LR           Q +I    +  + 
Sbjct: 91  GKIP---GSFFRRE---GRPSTDAILACRLIDRPLRPTFQKGLRNEVQCVITVMSVDPNE 144

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
                AI  A  A       +       +++ +              G  +   +  +  
Sbjct: 145 FYDVVAINAASAATQLSGLPVSGAVGGVRMALIADED-------HKDGQWVAFPNVEQHE 197

Query: 184 TI---------------DVDANFVMTDSG---HIVEVQGSAERATFSQDHFFAMLNLAKD 225
                              D   +M ++G    ++E       A  ++      L  AK 
Sbjct: 198 AALFEMVVAGRRVKKGKKNDVAIMMVEAGATEGVIERVADGAPAP-TESVVAEGLEAAKP 256

Query: 226 RIADLIKLQKD 236
            I  L + Q  
Sbjct: 257 FIDTLCRAQDQ 267


>gi|227488675|ref|ZP_03918991.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091336|gb|EEI26648.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 745

 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 90/245 (36%), Gaps = 14/245 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
            R+ GR   Q+R++S+   +   A GS L + G+T +L   TL+    E+    +     
Sbjct: 360 FRIDGRDVKQIRDLSVEVELVPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLSPVTS 419

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 420 KRYIHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERALLPVIPSKEEFPYAIRQVS 475

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  + ++L +    ++       +     G V+    G +    + D
Sbjct: 476 EALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAM-----GLVSDKIDGKMHYTALTD 530

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    +  +Q   +      +   A L  A +   +++     
Sbjct: 531 ILGAEDAFGDMDFKVAGTSEI-VTALQLDTKLDGIPSNVLAAALQQAHEARLEILDTMAQ 589

Query: 237 VISNE 241
           VI   
Sbjct: 590 VIEEP 594



 Score = 52.4 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 73/251 (29%), Gaps = 42/251 (16%)

Query: 12  REISLTRR-VSKYAEGSC---LVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEY 63
           R I      +++ A+GS    L +  DT +L T T      E    +             
Sbjct: 29  RTIRFETGQLARQADGSVTAYLDE--DTMMLATTTASNNPREGFDFFPLTVDVEERMYAK 86

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           G +P   G+  +RE   GR    +    R+I R LR           Q +I    +  + 
Sbjct: 87  GKIP---GSFFRRE---GRPSTDAILACRLIDRPLRPTFQKGLRNEVQCVITVMSVDPNE 140

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
                AI  A  A       +       +++ +              G  +   +  +  
Sbjct: 141 FYDVVAINAASAATQLSGLPVSGAVGGVRMALIADED-------HKDGQWVAFPNVEQHE 193

Query: 184 TI---------------DVDANFVMTDSG---HIVEVQGSAERATFSQDHFFAMLNLAKD 225
                              D   +M ++G    ++E       A  ++      L  AK 
Sbjct: 194 AALFEMVVAGRRVKKGKKNDVAIMMVEAGATEGVIERVADGAPAP-TESVVAEGLEAAKP 252

Query: 226 RIADLIKLQKD 236
            I  L + Q  
Sbjct: 253 FIDTLCRAQDQ 263


>gi|315106802|gb|EFT78778.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL030PA1]
          Length = 733

 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 85/250 (34%), Gaps = 23/250 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNTK 55
           +R+ GR    +R +S    +     GS L + G+T +L   +    + M      +    
Sbjct: 339 VRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL-GVSTLNMLDMEQKLDTLSPEN 397

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y M P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 398 TRRYMHNYNMPPYSTGETGRVGSPKRREIGHG----NLAERALIPVLPTREEFPYAIREV 453

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            + I ++G T   ++  + +AL +    +        +          +S     G    
Sbjct: 454 SEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMG--------LMSETDEDGKTKY 505

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED+  D+D     T    +  +Q   +      D     L  AK+    ++
Sbjct: 506 LALTDILGAEDALGDMDFKVAGTSEF-VTALQLDTKLDGIPADVLAGALKQAKEARTAIL 564

Query: 232 KLQKDVISNE 241
           ++  + I + 
Sbjct: 565 EVMNEAIDSP 574



 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 73/249 (29%), Gaps = 40/249 (16%)

Query: 14  ISLTRRVS-KYAEGSCLVKF-GDTHLL----TTATLEEKVPMWIRNTKHGWITAEYGMLP 67
           +     +  + A+GS  V   GDT LL       T  + +  +             G +P
Sbjct: 23  VRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRIP 82

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G+  +RE   GR    +    R+I R LR           Q+++    +        
Sbjct: 83  ---GSFFRRE---GRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDV 136

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AI  A ++                      G +  +   ++    +      +      
Sbjct: 137 VAINAASMSTQLAGL-------------PFSGPIGGVRMALIDDQWVCFPSVDQRKESTF 183

Query: 188 DANFV----MTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKL 233
           D              I+ V+  +  AT+          +++     L  AK  I  L   
Sbjct: 184 DMVVAGRVLADGDVAIMMVEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDA 243

Query: 234 QKDVISNEV 242
           Q   ++ ++
Sbjct: 244 Q-VALAAKL 251


>gi|314929746|gb|EFS93577.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL044PA1]
 gi|328907604|gb|EGG27368.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium sp. P08]
          Length = 735

 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 90/251 (35%), Gaps = 25/251 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R +S    +     GS L + G+T +L   +      +E+K+      T
Sbjct: 339 VRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL-GVSTLNMLDMEQKLDTLSPET 397

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              ++   Y M P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 398 SRRYMH-NYNMPPYSTGETGRVGSPKRREIGHG----NLAERALIPVLPTREEFPYAIRE 452

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-- 172
             + I ++G T   ++  + +AL +    +        +          +S     G   
Sbjct: 453 VSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMG--------LMSETDEDGKTK 504

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED+  D+D     T    +  +Q   +      D     L  AK+    +
Sbjct: 505 YLALTDILGAEDALGDMDFKVAGTSEF-VTALQLDTKLDGIPADVLAGALKQAKEARTAI 563

Query: 231 IKLQKDVISNE 241
           +++  D I + 
Sbjct: 564 LEVMNDAIDSP 574



 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 74/249 (29%), Gaps = 40/249 (16%)

Query: 14  ISLTRRVS-KYAEGSCLVKF-GDTHLL----TTATLEEKVPMWIRNTKHGWITAEYGMLP 67
           +     +  + A+GS  V   GDT LL       T  + +  +             G +P
Sbjct: 23  VRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRIP 82

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G+  +RE   GR    +    R+I R LR           Q+++    + +      
Sbjct: 83  ---GSFFRRE---GRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNSSVYYDV 136

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AI  A ++                      G +  +   ++    +      +      
Sbjct: 137 VAINAASMSTQLAGL-------------PFSGPIGGVRMALIDDQWVCFPSVDQRKESTF 183

Query: 188 DANFV----MTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKL 233
           D              I+ V+  +  AT+          +++     L  AK  I  L   
Sbjct: 184 DMVVAGRVLADGDVAIMMVEAESTPATWSLVRGGRTAPTEEVVATGLEAAKPFIKVLCDA 243

Query: 234 QKDVISNEV 242
           Q   ++ ++
Sbjct: 244 Q-VALAAKL 251


>gi|313811605|gb|EFS49319.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL083PA1]
          Length = 733

 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 85/250 (34%), Gaps = 23/250 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNTK 55
           +R+ GR    +R +S    +     GS L + G+T +L   +    + M      +    
Sbjct: 339 VRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL-GVSTLNMLDMEQKLDTLSPEN 397

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y M P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 398 TRRYMHNYNMPPYSTGETGRVGSPKRREIGHG----NLAERALIPVLPTREEFPYAIREV 453

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            + I ++G T   ++  + +AL +    +        +          +S     G    
Sbjct: 454 SEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMG--------LMSETDEDGKTKY 505

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED+  D+D     T    +  +Q   +      D     L  AK+    ++
Sbjct: 506 LALTDILGAEDALGDMDFKVAGTSEF-VTALQLDTKLDGIPADVLAGALKQAKEARTAIL 564

Query: 232 KLQKDVISNE 241
           ++  + I + 
Sbjct: 565 EVMNEAIDSP 574



 Score = 58.6 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 69/241 (28%), Gaps = 39/241 (16%)

Query: 14  ISLTRRVS-KYAEGSCLVKF-GDTHLL----TTATLEEKVPMWIRNTKHGWITAEYGMLP 67
           +     +  + A+GS  V   GDT LL       T  + +  +             G +P
Sbjct: 23  VRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRIP 82

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G+  +RE   GR    +    R+I R LR           Q+++    +        
Sbjct: 83  ---GSFFRRE---GRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDV 136

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AI  A ++                      G +  +   ++    +      +      
Sbjct: 137 VAINAASMSTQLAGL-------------PFSGPIGGVRMALIDDQWVCFPSVDQRKESTF 183

Query: 188 DANFV----MTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKL 233
           D              I+ V+  +  AT+          +++     L  AK  I  L   
Sbjct: 184 DMVVAGRVLADGDVAIMMVEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDA 243

Query: 234 Q 234
           Q
Sbjct: 244 Q 244


>gi|312139341|ref|YP_004006677.1| polyribonucleotide nucleotidyltransferase pnp [Rhodococcus equi
           103S]
 gi|311888680|emb|CBH47992.1| polyribonucleotide nucleotidyltransferase Pnp [Rhodococcus equi
           103S]
          Length = 752

 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 91/251 (36%), Gaps = 32/251 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TT----ATLEEKVPMWIRNTK 55
            R+ GR    +R +S    V   A GS L + G+T ++  T      + ++V      T 
Sbjct: 352 FRIDGRGITDIRSLSAEVAVIPRAHGSALFERGETQIMGVTTLDMVKMAQQVDSLGPETS 411

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 412 KRYMH-HYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPSQEEFPYAIRQV 466

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            + + ++G T   ++  + ++L +                 LK  VA I+ G++      
Sbjct: 467 SEALSSNGSTSMGSVCASTLSLLNAGV-------------PLKAPVAGIAMGLVSDEVDG 513

Query: 174 ------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                 + D+   ED+  D+D     T +  +  +Q   +            L+ A D  
Sbjct: 514 ETRYVALTDILGAEDAFGDMDFKVAGTKNF-VTALQLDTKLDGIPSQVLAGALSQAHDAR 572

Query: 228 ADLIKLQKDVI 238
             ++++  + I
Sbjct: 573 TTILEVMAEAI 583



 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 54/180 (30%), Gaps = 15/180 (8%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  +RE   GR    +    R+I R LR           Q+++    +         AI
Sbjct: 90  GSFFRRE---GRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVLSLDPKDLYDVVAI 146

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVL-----KGHVAAISCGMLCGYPIVDLDYGEDSTI 185
             A  +               +++ +      KG   A          + D+        
Sbjct: 147 NAASASTQIAGLPFSGPVGGVRVALITSEENKKGQWVAFPTVEQLESAVFDMVVAGRVVE 206

Query: 186 DVDANFVMTD----SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
             D   +M +       I  + G A+    ++      L  AK  IA L   Q   ++ +
Sbjct: 207 SGDVAIMMVEAEATENVISLIDGGAQAP--TEAIVAEGLEAAKPFIASLCGAQ-QALAEK 263


>gi|295131021|ref|YP_003581684.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium acnes SK137]
 gi|291376503|gb|ADE00358.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium acnes SK137]
 gi|313773552|gb|EFS39518.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL074PA1]
 gi|313831348|gb|EFS69062.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL007PA1]
 gi|313834958|gb|EFS72672.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL056PA1]
 gi|314974222|gb|EFT18318.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL053PA1]
 gi|314976667|gb|EFT20762.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL045PA1]
 gi|314984307|gb|EFT28399.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL005PA1]
 gi|315095362|gb|EFT67338.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL038PA1]
 gi|327328376|gb|EGE70138.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL096PA2]
 gi|327444160|gb|EGE90814.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL043PA2]
 gi|327444959|gb|EGE91613.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL043PA1]
 gi|328760033|gb|EGF73613.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL099PA1]
          Length = 733

 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 85/250 (34%), Gaps = 23/250 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNTK 55
           +R+ GR    +R +S    +     GS L + G+T +L   +    + M      +    
Sbjct: 339 VRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL-GVSTLNMLDMEQKLDTLSPEN 397

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y M P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 398 TRRYMHNYNMPPYSTGETGRVGSPKRREIGHG----NLAERALIPVLPTREEFPYAIREV 453

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            + I ++G T   ++  + +AL +    +        +          +S     G    
Sbjct: 454 SEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMG--------LMSETDEDGKTKY 505

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED+  D+D     T    +  +Q   +      D     L  AK+    ++
Sbjct: 506 LALTDILGAEDALGDMDFKVAGTSEF-VTALQLDTKLDGIPADVLAGALKQAKEARTAIL 564

Query: 232 KLQKDVISNE 241
           ++  + I + 
Sbjct: 565 EVMNEAIDSP 574



 Score = 58.6 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 69/241 (28%), Gaps = 39/241 (16%)

Query: 14  ISLTRRVS-KYAEGSCLVKF-GDTHLL----TTATLEEKVPMWIRNTKHGWITAEYGMLP 67
           +     +  + A+GS  V   GDT LL       T  + +  +             G +P
Sbjct: 23  VRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRIP 82

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G+  +RE   GR    +    R+I R LR           Q+++    +        
Sbjct: 83  ---GSFFRRE---GRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDV 136

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AI  A ++                      G +  +   ++    +      +      
Sbjct: 137 VAINAASMSTQLAGL-------------PFSGPIGGVRMALIDDQWVCFPSVDQRKESTF 183

Query: 188 DANFV----MTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKL 233
           D              I+ V+  +  AT+          +++     L  AK  I  L   
Sbjct: 184 DMVVAGRVLADGDVAIMMVEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDA 243

Query: 234 Q 234
           Q
Sbjct: 244 Q 244


>gi|50842950|ref|YP_056177.1| polynucleotide phosphorylase/polyadenylase [Propionibacterium acnes
           KPA171202]
 gi|289426541|ref|ZP_06428284.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium acnes SK187]
 gi|289428637|ref|ZP_06430320.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium acnes J165]
 gi|81611463|sp|Q6A7P6|PNP_PROAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|50840552|gb|AAT83219.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           KPA171202]
 gi|289153269|gb|EFD01987.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium acnes SK187]
 gi|289158035|gb|EFD06255.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Propionibacterium acnes J165]
 gi|313763615|gb|EFS34979.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL013PA1]
 gi|313794010|gb|EFS42034.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL110PA1]
 gi|313801396|gb|EFS42647.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL110PA2]
 gi|313807924|gb|EFS46405.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL087PA2]
 gi|313813334|gb|EFS51048.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL025PA1]
 gi|313816795|gb|EFS54509.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL059PA1]
 gi|313819709|gb|EFS57423.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL046PA2]
 gi|313822184|gb|EFS59898.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL036PA1]
 gi|313823581|gb|EFS61295.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL036PA2]
 gi|313825906|gb|EFS63620.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL063PA1]
 gi|313829586|gb|EFS67300.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL063PA2]
 gi|313839882|gb|EFS77596.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL086PA1]
 gi|314914770|gb|EFS78601.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL005PA4]
 gi|314919268|gb|EFS83099.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL050PA1]
 gi|314920821|gb|EFS84652.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL050PA3]
 gi|314924673|gb|EFS88504.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL036PA3]
 gi|314930500|gb|EFS94331.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL067PA1]
 gi|314957473|gb|EFT01576.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL002PA1]
 gi|314962057|gb|EFT06158.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL002PA2]
 gi|314963636|gb|EFT07736.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL082PA1]
 gi|314968532|gb|EFT12630.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL037PA1]
 gi|314978848|gb|EFT22942.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL072PA2]
 gi|314986493|gb|EFT30585.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL005PA2]
 gi|314990852|gb|EFT34943.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL005PA3]
 gi|315079490|gb|EFT51483.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL053PA2]
 gi|315081283|gb|EFT53259.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL078PA1]
 gi|315083481|gb|EFT55457.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL027PA2]
 gi|315087167|gb|EFT59143.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL002PA3]
 gi|315089337|gb|EFT61313.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL072PA1]
 gi|315099243|gb|EFT71219.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL059PA2]
 gi|315100450|gb|EFT72426.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL046PA1]
 gi|315109042|gb|EFT81018.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL030PA2]
 gi|327329757|gb|EGE71513.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL096PA3]
 gi|327334275|gb|EGE75989.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL097PA1]
 gi|327446443|gb|EGE93097.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL013PA2]
 gi|327451969|gb|EGE98623.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL092PA1]
 gi|327454994|gb|EGF01649.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL087PA3]
 gi|327457717|gb|EGF04372.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL083PA2]
 gi|328752198|gb|EGF65814.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL020PA1]
 gi|328755172|gb|EGF68788.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL087PA1]
 gi|328758348|gb|EGF71964.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL025PA2]
          Length = 733

 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 85/250 (34%), Gaps = 23/250 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNTK 55
           +R+ GR    +R +S    +     GS L + G+T +L   +    + M      +    
Sbjct: 339 VRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL-GVSTLNMLDMEQKLDTLSPEN 397

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y M P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 398 TRRYMHNYNMPPYSTGETGRVGSPKRREIGHG----NLAERALIPVLPTREEFPYAIREV 453

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            + I ++G T   ++  + +AL +    +        +          +S     G    
Sbjct: 454 SEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMG--------LMSETDEDGKTKY 505

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED+  D+D     T    +  +Q   +      D     L  AK+    ++
Sbjct: 506 LALTDILGAEDALGDMDFKVAGTSEF-VTALQLDTKLDGIPADVLAGALKQAKEARTAIL 564

Query: 232 KLQKDVISNE 241
           ++  + I + 
Sbjct: 565 EVMNEAIDSP 574



 Score = 59.0 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 73/249 (29%), Gaps = 40/249 (16%)

Query: 14  ISLTRRVS-KYAEGSCLVKF-GDTHLL----TTATLEEKVPMWIRNTKHGWITAEYGMLP 67
           +     +  + A+GS  V   GDT LL       T  + +  +             G +P
Sbjct: 23  VRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRIP 82

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G+  +RE   GR    +    R+I R LR           Q+++    +        
Sbjct: 83  ---GSFFRRE---GRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDV 136

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AI  A ++                      G +  +   ++    +      +      
Sbjct: 137 VAINAASMSTQLAGL-------------PFSGPIGGVRMALIDDQWVCFPSVDQRKESTF 183

Query: 188 DANFV----MTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKL 233
           D              I+ V+  +  AT+          +++     L  AK  I  L   
Sbjct: 184 DMVVAGRVLADGDVAIMMVEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDA 243

Query: 234 QKDVISNEV 242
           Q   ++ ++
Sbjct: 244 Q-VALAAKL 251


>gi|313836842|gb|EFS74556.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL037PA2]
 gi|314972179|gb|EFT16276.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL037PA3]
          Length = 735

 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 90/251 (35%), Gaps = 25/251 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R +S    +     GS L + G+T +L   +      +E+K+      T
Sbjct: 339 VRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL-GVSTLNMLDMEQKLDTLSPET 397

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              ++   Y M P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 398 SRRYMH-NYNMPPYSTGETGRVGSPKRREIGHG----NLAERALIPVLPTREEFPYAIRE 452

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-- 172
             + I ++G T   ++  + +AL +    +        +          +S     G   
Sbjct: 453 VSEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMG--------LMSETDEDGKTK 504

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED+  D+D     T    +  +Q   +      D     L  AK+    +
Sbjct: 505 YLALTDILGAEDALGDMDFKVAGTSEF-VTALQLDTKLDGIPADVLAGALKQAKEARTAI 563

Query: 231 IKLQKDVISNE 241
           +++  D I + 
Sbjct: 564 LEVMNDAIDSP 574



 Score = 62.0 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 75/249 (30%), Gaps = 40/249 (16%)

Query: 14  ISLTRRVS-KYAEGSCLVKF-GDTHLL----TTATLEEKVPMWIRNTKHGWITAEYGMLP 67
           +     +  + A+GS  V   GDT LL       T  + +  ++            G +P
Sbjct: 23  VRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFLLTVDVEERMYAAGRIP 82

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G+  +RE   GR    +    R+I R LR           Q+++    + +      
Sbjct: 83  ---GSFFRRE---GRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNSSVYYDV 136

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AI  A ++                      G +  +   ++    +      +      
Sbjct: 137 VAINAASMSTQLAGL-------------PFSGPIGGVRMALIDDQWVCFPSVDQRKESTF 183

Query: 188 DANFV----MTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKL 233
           D              I+ V+  +  AT+          +++     L  AK  I  L   
Sbjct: 184 DMVVAGRVLADGDVAIMMVEAESTPATWSLVRGGRTAPTEEVVATGLEAAKPFIKVLCDA 243

Query: 234 QKDVISNEV 242
           Q   ++ ++
Sbjct: 244 Q-VALAAKL 251


>gi|325672779|ref|ZP_08152475.1| polyribonucleotide nucleotidyltransferase [Rhodococcus equi ATCC
           33707]
 gi|325556656|gb|EGD26322.1| polyribonucleotide nucleotidyltransferase [Rhodococcus equi ATCC
           33707]
          Length = 752

 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 91/251 (36%), Gaps = 32/251 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TT----ATLEEKVPMWIRNTK 55
            R+ GR    +R +S    V   A GS L + G+T ++  T      + ++V      T 
Sbjct: 352 FRIDGRGITDIRSLSAEVAVIPRAHGSALFERGETQIMGVTTLDMVKMAQQVDSLGPETS 411

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 412 KRYMH-HYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPSQEEFPYAIRQV 466

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            + + ++G T   ++  + ++L +                 LK  VA I+ G++      
Sbjct: 467 SEALSSNGSTSMGSVCASTLSLLNAGV-------------PLKAPVAGIAMGLVSDEVDG 513

Query: 174 ------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                 + D+   ED+  D+D     T +  +  +Q   +            L+ A D  
Sbjct: 514 ETRYVALTDILGAEDAFGDMDFKVAGTKNF-VTALQLDTKLDGIPSQVLAGALSQAHDAR 572

Query: 228 ADLIKLQKDVI 238
             ++++  + I
Sbjct: 573 TTILEVMAEAI 583



 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 54/180 (30%), Gaps = 15/180 (8%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  +RE   GR    +    R+I R LR           Q+++    +         AI
Sbjct: 90  GSFFRRE---GRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVLSLDPKDLYDVVAI 146

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVL-----KGHVAAISCGMLCGYPIVDLDYGEDSTI 185
             A  +               +++ +      KG   A          + D+        
Sbjct: 147 NAASASTQIAGLPFSGPVGGVRVALITSEENKKGQWVAFPTVEQLESAVFDMVVAGRVVE 206

Query: 186 DVDANFVMTD----SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
             D   +M +       I  + G A+    ++      L  AK  IA L   Q   ++ +
Sbjct: 207 SGDVAIMMVEAEATENVISLIDGGAQAP--TEAIVAEGLEAAKPFIASLCGAQ-QALAEK 263


>gi|118617705|ref|YP_906037.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium ulcerans
           Agy99]
 gi|118569815|gb|ABL04566.1| bifunctional protein polyribonucleotide nucleotidyltransferase GpsI
           [Mycobacterium ulcerans Agy99]
          Length = 753

 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 12/243 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    +   A GS L + G+T +L   T  + V M  +    G  T
Sbjct: 342 FRIDGRGVTDIRALSAEVALVPRAHGSALFERGETQIL-GVTTLDMVKMAQQIDSLGPET 400

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 401 TKRYMHHYNFPPFSTGETGRVGSPKRREIGHG----ALAERALMPVLPSVEEFPYAIRQV 456

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            + + ++G T   ++  + +AL +    ++       +  ++   V            + 
Sbjct: 457 SEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMG-LVSDDVEVDGKTERRFVTLT 515

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED+  D+D     T    +  +Q   +            L  AKD    ++++  
Sbjct: 516 DILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALAQAKDARLTILEVMA 574

Query: 236 DVI 238
           + I
Sbjct: 575 EAI 577



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 78/248 (31%), Gaps = 40/248 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM--LPR 68
           R I      +++ A GS +    D ++L +AT   K P    N     +  E  M    R
Sbjct: 16  RTIRFETGRLAQQAAGSVVGYLDDENMLLSATTASKNPKEHFNFFPLTVDVEERMYAAGR 75

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR    +    R+I R LR           Q+++    +  +      
Sbjct: 76  IPGSFFRRE---GRPSTDAILTCRLIDRPLRPSFVNGLRNEIQVVVTILSLDPNDLYDVV 132

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE------- 181
           AI  A  +                      G V  +   ++ G  +   +  +       
Sbjct: 133 AINAASASTQLAGL-------------PFSGPVGGVRVALIDGQWVAFPNVEQLERAVFD 179

Query: 182 ----------DSTIDVDANFVMTDS---GHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                     +     D   +M ++     ++E+      A  ++      L  AK  IA
Sbjct: 180 MVVAGRIVGTEEDGTPDVAIMMVEAEATDKVIELVEGGAPAP-TESVVAQGLEAAKPFIA 238

Query: 229 DLIKLQKD 236
            L   Q++
Sbjct: 239 ALCTAQQE 246


>gi|295116235|emb|CBL37082.1| polyribonucleotide nucleotidyltransferase [butyrate-producing
           bacterium SM4/1]
          Length = 703

 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 89/254 (35%), Gaps = 34/254 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT-ATLEE--KVPMWIRNTKH 56
           R  GR   ++R ++    +     GS +   G T +L   T A L E  K+     N   
Sbjct: 312 RPDGRGITEIRPLAAEIDLLPRVHGSGMFTRGQTQILNICTLAPLSEAQKLDGLDENETS 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         I    
Sbjct: 372 KRYMHHYNFPSYSVGETKPSRGPGRREIGHG----ALAERALIPVLPSEEEFPYAIRTVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + ++++G T  A+I  + ++L                   +K  VA ISCG++ G     
Sbjct: 428 ETMESNGSTSQASICASTLSLMAAGV-------------PIKAPVAGISCGLVTGDTDDD 474

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G I  +Q   +    ++      +  AK R A L
Sbjct: 475 YIVLTDIQGLEDFFGDMDFKVGGTHKG-ITSIQMDIKIHGLTRPIIEEAI--AKTREARL 531

Query: 231 I---KLQKDVISNE 241
               ++ K VI+  
Sbjct: 532 YILDEIMKPVIAEP 545



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 78/226 (34%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+  A G+  + +GDT +L+TAT      E +  +  + +        G +
Sbjct: 12  RTLTVDVGRVAAQANGAAFMHYGDTTVLSTATASDKPREGIDFFPLSVEFEEKMYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 72  P---GGFNKRE---GKASENAVLTARVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  A    GM+ G  IV+    +    D
Sbjct: 126 YTAMLGSAIA-------------TCISDIPFDGPCATTQIGMIDGEFIVNPTSAQRKVSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +D     +  A +   ++IK
Sbjct: 173 MALTVASTRE-KVIMIEAGANEVP--EDVMIQAIFKAHEVNQEIIK 215


>gi|108864299|gb|ABG22460.1| 3' exoribonuclease family domain 1-containing protein, putative,
           expressed [Oryza sativa Japonica Group]
 gi|215706902|dbj|BAG93362.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215736842|dbj|BAG95771.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218185641|gb|EEC68068.1| hypothetical protein OsI_35924 [Oryza sativa Indica Group]
 gi|222615895|gb|EEE52027.1| hypothetical protein OsJ_33746 [Oryza sativa Japonica Group]
          Length = 306

 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 92/265 (34%), Gaps = 43/265 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R+  + R  ++       A GS LV+ GDT +L +  LE   P        G I 
Sbjct: 39  VRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASIKLEVMSPSGEA-PDEGSIA 97

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR------SVVDLSALGSRQ--- 111
            E+ M P  +   + R        GR  E+  +I + L        +++L  L       
Sbjct: 98  VEFHMPPICSP--LVRP-------GRPAEVAPVISKNLEDILMSSGMLNLKELCLISGKA 148

Query: 112 ---IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS-------------------- 148
                +D   + ADG    AA+  A  A       +                        
Sbjct: 149 SWLAYLDVYCLNADGSLFDAALISAVAAFTHLEIPLVSVGDDGRVFTVGGNEGKAKYELV 208

Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
           N+ +    +     +++C +     + D    E+S I+     V+  S  IV +Q     
Sbjct: 209 NREKRKLTITNVPFSLTCALHKDNVLADPTAEEESIIETSVTIVLDSSDQIVSIQKPG-G 267

Query: 209 ATFSQDHFFAMLNLAKDRIADLIKL 233
           A  S       ++LAKDR   L ++
Sbjct: 268 AVTSMTTIKECISLAKDRRRKLREI 292


>gi|283798318|ref|ZP_06347471.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. M62/1]
 gi|291073901|gb|EFE11265.1| polyribonucleotide nucleotidyltransferase [Clostridium sp. M62/1]
          Length = 703

 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 89/254 (35%), Gaps = 34/254 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT-ATLEE--KVPMWIRNTKH 56
           R  GR   ++R ++    +     GS +   G T +L   T A L E  K+     N   
Sbjct: 312 RPDGRGITEIRPLAAEIDLLPRVHGSGMFTRGQTQILNICTLAPLSEAQKLDGLDENETS 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         I    
Sbjct: 372 KRYMHHYNFPSYSVGETKPSRGPGRREIGHG----ALAERALIPVLPSEEEFPYAIRTVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + ++++G T  A+I  + ++L                   +K  VA ISCG++ G     
Sbjct: 428 ETMESNGSTSQASICASTLSLMAAGV-------------PIKAPVAGISCGLVTGDTDDD 474

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G I  +Q   +    ++      +  AK R A L
Sbjct: 475 YIVLTDIQGLEDFFGDMDFKVGGTHKG-ITSIQMDIKIHGLTRPIIEEAI--AKTREARL 531

Query: 231 I---KLQKDVISNE 241
               ++ K VI+  
Sbjct: 532 YILDEIMKPVIAEP 545



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 78/226 (34%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+  A G+  + +GDT +L+TAT      E +  +  + +        G +
Sbjct: 12  RTLTVDVGRVAAQANGAAFMHYGDTTVLSTATASDKPREGIDFFPLSVEFEEKMYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 72  P---GGFNKRE---GKASENAVLTARVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  A    GM+ G  IV+    +    D
Sbjct: 126 YTAMLGSAIA-------------TCISDIPFDGPCATTQIGMIDGEFIVNPTSAQRKVSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +D     +  A +   ++IK
Sbjct: 173 MALTVASTRE-KVIMIEAGANEVP--EDVMIQAIFKAHEVNQEIIK 215


>gi|296139452|ref|YP_003646695.1| polyribonucleotide nucleotidyltransferase [Tsukamurella
           paurometabola DSM 20162]
 gi|296027586|gb|ADG78356.1| polyribonucleotide nucleotidyltransferase [Tsukamurella
           paurometabola DSM 20162]
          Length = 750

 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 88/251 (35%), Gaps = 32/251 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-----WIRNTK 55
            R+ GR    +R +S    V   A GS L + G+T +L   T  + V M      +   K
Sbjct: 350 FRIDGRGITDIRSLSAEIAVIPRAHGSALFERGETQIL-GVTTLDMVKMAQQIDSLGPEK 408

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 409 SKRYMHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPSVEEFPYAIRQV 464

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            + + ++G T   ++  + ++L +                 LK  VA I+ G++      
Sbjct: 465 SEALSSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLVSDEVDG 511

Query: 174 ------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                 + D+   ED+  D+D     T    +  +Q   +            L  AKD  
Sbjct: 512 QARYVALTDILGAEDAFGDMDFKVAGTSDF-VTALQLDTKLDGIPSQVLAGALGQAKDAR 570

Query: 228 ADLIKLQKDVI 238
             ++++  + I
Sbjct: 571 TTILEVMAEAI 581



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 75/246 (30%), Gaps = 37/246 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM--LPR 68
           R I       ++ A GS      D  +L +AT   K P    +     +  E  M    R
Sbjct: 28  RTIRFETGRFAQQAAGSVAAYLDDETMLLSATSHSKHPKEHFDFFPLTVDVEERMYAAGR 87

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR    +    R+I R LR           Q+++    +         
Sbjct: 88  IPGSFFRRE---GRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLD-------- 136

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
                   L+D +      ++         G V  +   ++ G  +      +      D
Sbjct: 137 -----PKDLYDVVAINAASASTQIAGLPFSGPVGGVRVALIDGQWVAFPTVEQLERAVFD 191

Query: 189 ANF---VMTDSGH-----IVEVQGSAERATF----------SQDHFFAMLNLAKDRIADL 230
                 +++ SG      I+ V+  A               ++      L  AK  IA L
Sbjct: 192 MVVAGRIVSGSGKDADVAIMMVEAEATENVIELIAGGATAPTEAVVAEGLEAAKPFIAVL 251

Query: 231 IKLQKD 236
            + QK 
Sbjct: 252 CEAQKQ 257


>gi|168045848|ref|XP_001775388.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673333|gb|EDQ59858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 256

 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 70/196 (35%), Gaps = 27/196 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q+R +SL+R +   A GS      +T +L      +   M   N +   I  
Sbjct: 19  RADGRSASQLRPLSLSRGLLTRAHGSATWSQENTTVLAAVYGPKPAAMKKENAERAIIEV 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            +      +G+  K   V             ++ R+L  ++  +   +  I +   VI  
Sbjct: 79  VWRAKSGLSGSYEKDAEV-------------VVRRSLEYIILTALHPNTAISVILQVIND 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYG 180
           DG     A+  A  AL D                 L G ++A+SCG+   G   +D    
Sbjct: 126 DGSLLACAMNAACAALVDAGI-------------PLNGLLSAVSCGVTHDGQVFLDPTKP 172

Query: 181 EDSTIDVDANFVMTDS 196
           E+       +FV    
Sbjct: 173 EEQKCKAYVSFVFPSR 188


>gi|208435109|ref|YP_002266775.1| polynucleotide phosphorylase [Helicobacter pylori G27]
 gi|257096696|sp|B5Z8L0|PNP_HELPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|208433038|gb|ACI27909.1| polynucleotide phosphorylase [Helicobacter pylori G27]
          Length = 688

 Score = 92.5 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 88/249 (35%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------------TLEEKVP 48
           +R   R   ++R I +   +   A  S L   G T  L               +LE K P
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKTP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGAASRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDYAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK+   
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEILYQALLQAKEARK 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 71.7 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 79/216 (36%), Gaps = 26/216 (12%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S + + G T +L +  +E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLMYRLGKTIILASVCVERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
             ++ GR+Q  EI   R+I R  R +         QI +       +   + +A+  A V
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTFRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASV 132

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT- 194
           AL                   +K  V+A     +    I++ +    +   +D     T 
Sbjct: 133 ALFLAHIA------------PIK-SVSACRIARIDDEFIINPNTSLLNQSSLDLFVSGTK 179

Query: 195 DSGHIVEVQGSAER-ATFSQDHFFAMLNLAKDRIAD 229
           +S +++E++   ++     +      L LA+  + +
Sbjct: 180 ESLNMIEMRSLGQKLNALEEPLMLKALELAQKSLKE 215


>gi|282897292|ref|ZP_06305294.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9]
 gi|281197944|gb|EFA72838.1| Polyribonucleotide nucleotidyltransferase [Raphidiopsis brookii D9]
          Length = 259

 Score = 92.5 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 91/234 (38%), Gaps = 28/234 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66
           R+I L   +    A GS L++ GDT +L TAT  E             +T +Y       
Sbjct: 13  RDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRSEA----REGIDFLPLTVDYEERLYAA 68

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
            R  G  ++RE   GR   R+    R+I R LR +         Q+I     +       
Sbjct: 69  GRIPGGIMRRE---GRPPERAILTSRLIDRPLRPLFPSWLRDDLQVIALTLSMDELVPPD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+TGA +A                      G +AA+  G++    I++  Y E    D
Sbjct: 126 VLAVTGASIATLIAQI-------------PFYGPMAAVRVGLVGDDFIINPTYAEIEAGD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +D     +  G ++ V+  A +    +      ++   + + DLI+ Q+D+I+ 
Sbjct: 173 LDLVVAGSPDG-VIMVEAGANQ--LPERDIIEAIDFGYEAVRDLIQAQRDLIAE 223


>gi|325284098|ref|YP_004256639.1| Polyribonucleotide nucleotidyltransferase [Deinococcus
           proteolyticus MRP]
 gi|324315907|gb|ADY27022.1| Polyribonucleotide nucleotidyltransferase [Deinococcus
           proteolyticus MRP]
          Length = 810

 Score = 92.5 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 91/246 (36%), Gaps = 26/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTATLEEKVPMWIRN---TKH 56
           +R  GR    +R I    R    A GS +   G+T +L  T    E+  + I +      
Sbjct: 318 LRADGRDTRTVRPIWTEVRPLPRAHGSAIFTRGETQVLGVTTLGTERDEILIDDLTEDTG 377

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  A S R+ G       +  RAL +V+         I +  
Sbjct: 378 DKFLLHYNFPPYSTGEVKRMGAQSRREVGHG----NLAKRALSAVLPPFEEFPYVIRVVG 433

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           +V++++G +  A +    ++L D                 +K  VA ++ G++       
Sbjct: 434 EVLESNGSSSMATVCSGALSLMDAGV-------------PIKAPVAGVAMGLVMEGDRYR 480

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T  G +  +Q   +    +       L  AK+    ++ 
Sbjct: 481 ILTDILGLEDALGDMDFKVCGTAEG-VTALQMDIKIGGITPAIMREALAQAKEARLHILG 539

Query: 233 LQKDVI 238
              +V+
Sbjct: 540 KMAEVL 545



 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 87/238 (36%), Gaps = 31/238 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           RE+++    ++K   GS  +++GDT LL TA   ++            +T E+     + 
Sbjct: 13  RELTIETGRLAKLVSGSVTLRYGDTLLLVTAQARQE----KSTLDFLPLTVEFEEKHYAV 68

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G    +  +RE   GR G R+    R+  R +R +         Q+II   V+ AD    
Sbjct: 69  GKIPGSFSRRE---GRPGERAILSARITDRQIRPLFPKGYRHETQVIIT--VLSAD---- 119

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                       D L  +   +          G  A +  G + G  +++    +    D
Sbjct: 120 -------QQNAPDVLGPIGAAAALSISDIPWGGPTACVRVGRVDGQFVINPTAVQLERSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA---KDRIADLIKLQKDVISNE 241
           +D     T    ++ V+  A+    ++D     +  A      + DLI   +  +  E
Sbjct: 173 LDLVVAGTRDA-VMMVEAGAQ--VVAEDELVDAIEFAHAEMQGVLDLIDTMRAELGRE 227


>gi|187610336|sp|A0PQE7|PNP_MYCUA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 762

 Score = 92.5 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 12/243 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    +   A GS L + G+T +L   T  + V M  +    G  T
Sbjct: 351 FRIDGRGVTDIRALSAEVALVPRAHGSALFERGETQIL-GVTTLDMVKMAQQIDSLGPET 409

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 410 TKRYMHHYNFPPFSTGETGRVGSPKRREIGHG----ALAERALMPVLPSVEEFPYAIRQV 465

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            + + ++G T   ++  + +AL +    ++       +  ++   V            + 
Sbjct: 466 SEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMG-LVSDDVEVDGKTERRFVTLT 524

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED+  D+D     T    +  +Q   +            L  AKD    ++++  
Sbjct: 525 DILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALAQAKDARLTILEVMA 583

Query: 236 DVI 238
           + I
Sbjct: 584 EAI 586



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 78/248 (31%), Gaps = 40/248 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM--LPR 68
           R I      +++ A GS +    D ++L +AT   K P    N     +  E  M    R
Sbjct: 25  RTIRFETGRLAQQAAGSVVGYLDDENMLLSATTASKNPKEHFNFFPLTVDVEERMYAAGR 84

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR    +    R+I R LR           Q+++    +  +      
Sbjct: 85  IPGSFFRRE---GRPSTDAILTCRLIDRPLRPSFVNGLRNEIQVVVTILSLDPNDLYDVV 141

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE------- 181
           AI  A  +                      G V  +   ++ G  +   +  +       
Sbjct: 142 AINAASASTQLAGL-------------PFSGPVGGVRVALIDGQWVAFPNVEQLERAVFD 188

Query: 182 ----------DSTIDVDANFVMTDS---GHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                     +     D   +M ++     ++E+      A  ++      L  AK  IA
Sbjct: 189 MVVAGRIVGTEEDGTPDVAIMMVEAEATDKVIELVEGGAPAP-TESVVAQGLEAAKPFIA 247

Query: 229 DLIKLQKD 236
            L   Q++
Sbjct: 248 ALCTAQQE 255


>gi|317009891|gb|ADU80471.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           India7]
          Length = 688

 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 88/249 (35%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------------TLEEKVP 48
           +R   R   ++R I +   +   A  S L   G T  L               +LE K P
Sbjct: 313 IRPDKRALEEVRPILIESGLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKTP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGATSRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK+   
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEVLYQALLQAKEARK 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 58.2 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 76/218 (34%), Gaps = 30/218 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S + + G T +L +   E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLMYRLGKTIILASVCAERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
              L     +    +        +K  V+A     +    I++ +    +   +D     
Sbjct: 122 ---LQVSALNAASAALFLARIAPIK-SVSACRIARIGNEFIINPNTSLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEVQGSAER-ATFSQDHFFAMLNLAKDRIAD 229
           T +S +++E++   ++     +      L LA+  + +
Sbjct: 178 TKESLNMIEMRSLGQKLNALEEPLMLKALELAQKSLKE 215


>gi|187607878|ref|NP_001120226.1| exosome component 9 [Xenopus (Silurana) tropicalis]
 gi|169642591|gb|AAI60389.1| LOC100145275 protein [Xenopus (Silurana) tropicalis]
          Length = 406

 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 92/260 (35%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I +T   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIKITFG-TDY--GCCIVELGKTRVLCQVS-SEIVTPKMNRPTEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
           +  + P +           GR    S ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  DLAISPMAFPG-----FEMGRNSELSVKLNRLLERCLRNSKCIDTESLCVAAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF----------QLSQVLKGHVAA 163
           +D  ++  +G    AA   A   L    +       +            +   +      
Sbjct: 134 VDLHLLNHEGNIIDAASIAAIAGLCHFRRPDVSVQGEEVTVYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGMLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD    E+  +D      M     I  +Q S       ++       
Sbjct: 194 VSFAFFQQGIYLLVDPSEREEWVMDGLLVISMNKHREICTIQSSG-GIMLLKEQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++ ++ +L +  + N+
Sbjct: 253 VAGVKVGEITELIQKALEND 272


>gi|315651726|ref|ZP_07904731.1| polyribonucleotide nucleotidyltransferase [Eubacterium saburreum
           DSM 3986]
 gi|315485981|gb|EFU76358.1| polyribonucleotide nucleotidyltransferase [Eubacterium saburreum
           DSM 3986]
          Length = 717

 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 76/230 (33%), Gaps = 29/230 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWIT 60
           R  GR   Q+R ++    +     GS +   G T +    TL        I        T
Sbjct: 332 RPDGRAMTQIRPLAAEVDIIPRVHGSAMFTRGQTQICNVVTLAPLAEAQKIDGLNQSETT 391

Query: 61  A----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y     S G          R+ G       +  RAL  V+         I    
Sbjct: 392 KRYIHQYNFPSYSVGETRPSRGPGRREIGHG----ALAERALIPVLPAPEEFPYAIRSVS 447

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +  +++G T  A+   + +AL                   +K  VA ISCG++ G     
Sbjct: 448 ETFESNGSTSMASTCSSCMALMAAGV-------------PIKKMVAGISCGLVTGESDDD 494

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
              + D+   ED   D+D     TDSG I  +Q   +    ++D     +
Sbjct: 495 YVLLTDIQGLEDFFGDMDFKVTGTDSG-ITAIQMDIKIHGLTKDIVKGAI 543



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 81/234 (34%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    V+  A G+  + +GDT +L+TAT      + +  +  + ++       G +
Sbjct: 32  RILRVDIGRVAAQANGAAFMHYGDTTVLSTATASDKPRDGIDFFPLSVEYEEKMYAVGKM 91

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 92  P---GGYNKRE---GKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPE 145

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  A    GM+ G+ +V+ +  + +  D
Sbjct: 146 LTAMLGSAIATA-------------ISDIPFDGPCATTQIGMVGGFFVVNPNEEQMAVSD 192

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    ++ ++  A       +     +  A     ++I     +++ 
Sbjct: 193 LKLTVASTKD-KVIMIEAGANEIP--DEKMIEAIYKADSVNKEIIAFIDKIVAE 243


>gi|308184960|ref|YP_003929093.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           SJM180]
 gi|308060880|gb|ADO02776.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           SJM180]
          Length = 688

 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 89/249 (35%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------------TLEEKVP 48
           +R   R   ++R I +   +   A  S L   G T  L               +LE K+P
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKIP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGATSRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK+   
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIRLEVLYQALLQAKEARK 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 76/218 (34%), Gaps = 30/218 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S + + G T +L +  +E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLMYRLGKTIILASVCVERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
              L     +    +        +K  V+A     +    I++ +    +   +D     
Sbjct: 122 ---LQVSALNAASAALFLAHIAPIK-SVSACRIARVDNEFIINPNTSLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEVQGSAER-ATFSQDHFFAMLNLAKDRIAD 229
           T +S +++E+    ++     +      L LA+  + +
Sbjct: 178 TKESLNMIEMHSLGQKLNALEEPLMLKALELAQKSLKE 215


>gi|163814157|ref|ZP_02205549.1| hypothetical protein COPEUT_00311 [Coprococcus eutactus ATCC 27759]
 gi|158450606|gb|EDP27601.1| hypothetical protein COPEUT_00311 [Coprococcus eutactus ATCC 27759]
          Length = 731

 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 76/231 (32%), Gaps = 31/231 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHL--LTTATLEEKVPMWIRNTKHGWI 59
           R  GR  NQ+R ++    +     GS +   G T +  + T     ++   +        
Sbjct: 348 RPDGRAINQIRPLAAEVDIIPRVHGSAMFTRGQTQICNVCTLAPLSEIQR-VDGLDENVT 406

Query: 60  TAE----YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           T      Y     S G       VS   G R      +  RAL  V+         I   
Sbjct: 407 TKRYMHHYNFPAYSVGETK----VSRGPGRREIGHGALAERALLPVLPSEEEFPYAIRTV 462

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            +  +++G T  A+   + ++L                   +K  VA ISCG++ G    
Sbjct: 463 SETFESNGSTSMASTCSSCMSLMAAGV-------------PIKAMVAGISCGLVTGDTDD 509

Query: 173 ---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
               + D+   ED   D+D     T  G I  +Q   +    ++      +
Sbjct: 510 DYIVLTDIQGLEDFFGDMDFKVTGTTEG-ITAIQMDIKIHGLTRPIVEEAI 559



 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 82/234 (35%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTAT--LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+  A G+  +K+GDT +L   TA+    + +  +  + ++       G +
Sbjct: 48  RMLTVDIGRVAAQANGAAFIKYGDTTVLSTCTASEKPRDGIDFFPLSVEYEEKLYSVGKI 107

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  +    
Sbjct: 108 P---GGFNKRE---GKASENAVLTSRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPECRPE 161

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  A    G++ G  I++    +    D
Sbjct: 162 LVAMLGSSIA-------------TCISDVPFDGPCAMTQVGLIDGEFIINPTQKQWDEGD 208

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    ++ ++  A      +      + +A D   D+I    ++++ 
Sbjct: 209 LKLTVASTSQ-KVIMIEAGANIVP--EAKMIEAIYMAHDINQDIIAFINEIVAE 259


>gi|240171316|ref|ZP_04749975.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium kansasii
           ATCC 12478]
          Length = 756

 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 85/246 (34%), Gaps = 14/246 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    V   A GS L + G+T +L   T  + V M  +    G  T
Sbjct: 342 FRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQIL-GVTTLDMVKMAQQIDSLGPET 400

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 401 TKRYMHHYNFPPFSTGETGRVGSPKRREIGHG----ALAERALVPVLPGVEEFPYAIRQV 456

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            + + ++G T   ++  + +AL +    ++       +  V          G        
Sbjct: 457 SEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDIEVEGDDGKRTERRFV 516

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T    +  +Q   +            L  A+D    +++
Sbjct: 517 TLTDILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALEQARDARLTILE 575

Query: 233 LQKDVI 238
           +  + I
Sbjct: 576 VMAEAI 581



 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 55/185 (29%), Gaps = 35/185 (18%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  +RE   GR    +    R+I R LR           QI++    +  +        
Sbjct: 78  GSFFRRE---GRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVVTILSLDPN-------- 126

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
                 L+D L      ++         G + A+   ++ G  +      +      D  
Sbjct: 127 -----DLYDVLAINAASASTQLGGLPFSGPIGAVRVALIDGTWVAFPTVEQIGRAVFDMV 181

Query: 191 F----VMTDSGH-----IVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
                V TD        I+ V+  A               ++      L  AK  IA L 
Sbjct: 182 VAGRIVGTDDAGKPDVAIMMVEAEATENVIDLLEGGAAAPTESVVAQGLEAAKPFIAALC 241

Query: 232 KLQKD 236
             Q++
Sbjct: 242 TAQQE 246


>gi|302387373|ref|YP_003823195.1| polyribonucleotide nucleotidyltransferase [Clostridium
           saccharolyticum WM1]
 gi|302198001|gb|ADL05572.1| polyribonucleotide nucleotidyltransferase [Clostridium
           saccharolyticum WM1]
          Length = 709

 Score = 92.1 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 82/253 (32%), Gaps = 32/253 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMWIRNTK---- 55
           R  GR  +Q+R ++    +     GS +   G T +L   T     +    +        
Sbjct: 312 RPDGRAMDQIRHLAAEIDMLPRVHGSAMFTRGQTQILNICTLAPLSESQR-LDGIDDMET 370

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G          R+ G       +  RAL  V+         I   
Sbjct: 371 SKRYMHHYNFPSFSVGETKPSRGPGRREIGHG----ALAERALIPVLPSEEEFPYAIRTV 426

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            + ++++G T  A+I  + ++L                   +K  VA ISCG++ G    
Sbjct: 427 SETMESNGSTSQASICSSSMSLMAAGV-------------PIKAAVAGISCGLVTGDTDD 473

Query: 173 ---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR-IA 228
               + D+   ED   D+D     T  G I  +Q   +    ++      +   +   + 
Sbjct: 474 DYIVLTDIQGLEDFFGDMDFKVGGTHKG-ITAIQMDIKIHGLTRPIIEEAIRTTRKARLY 532

Query: 229 DLIKLQKDVISNE 241
            L ++    I+  
Sbjct: 533 ILDEVMAKAIAEP 545



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 80/226 (35%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+K A G+  + +GDT +L TAT      + +  +  + ++       G +
Sbjct: 12  RTLTVDVGRVAKQANGAAFMHYGDTVVLATATASDKPRDGIDFFPLSVEYEEKLYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 72  P---GGFNKRE---GKASENAILTSRVIDRPMRPLFPKDYRNDVTLDNIVMSVDQDCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  A+   G++ G  +V+    +    D
Sbjct: 126 LTAMLGSAIA-------------TCISDIPFDGPCASTQIGLVDGELVVNPTQAQKQVSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +D     +  A +   ++IK
Sbjct: 173 MALTVASTRE-KVIMIEAGANEVP--EDKMIEAIFKAHEVNQEIIK 215


>gi|298708135|emb|CBJ30476.1| Polyribonucleotide nucleotidyltransferase [Ectocarpus siliculosus]
          Length = 763

 Score = 92.1 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 86/253 (33%), Gaps = 21/253 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWI------ 51
           R  GR +++ R+++    V     GS +   G T  L   T    LE     ++      
Sbjct: 340 RPDGRGKDEARDLTGEVDVLPTVHGSGMFTRGQTQTLAIVTLGPALESAPQRFLGKAQEA 399

Query: 52  RNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
            +T    +   Y   P       +   V+ R  G       +  RA+ SV+  +      
Sbjct: 400 SDTLDARLYLHYEFPPYCVNETGRVGLVNRRMVGHG----NLAERAVLSVMPETETFPYT 455

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
             +  +V  ++G +  A      +AL D    +        +  +     A    G   G
Sbjct: 456 TRVSAEVTMSNGSSSMATACATSLALMDAGVPVSSPVGGISVGLMTTDAPAD---GEDIG 512

Query: 172 --YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAE-RATFSQDHFFAMLNLAKDRIA 228
               ++D+   ED   D+D     T +G I  +Q   + R           L +AK   A
Sbjct: 513 PHSILMDIQGTEDHYGDMDFKVAGTATG-ITAIQLDVKLRGGVPLPVLSEALRVAKAGRA 571

Query: 229 DLIKLQKDVISNE 241
            ++K  K  I + 
Sbjct: 572 QVLKAMKKAIGSP 584



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 74/237 (31%), Gaps = 39/237 (16%)

Query: 14  ISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           I+         A+G    + G T ++ +A         + ++    ++ +Y     + G 
Sbjct: 19  ITFETGKIAQLADGFVTARQGGTVVMVSAVSNRAE---MDDSGFLPLSVDYREKAHALG- 74

Query: 73  RVKREAVSGRQGGRSQE----IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             K      R+ GR  +    + R + R LR +         Q++     ++A G     
Sbjct: 75  --KIPRTPNRRDGRETDEEVLVARAVDRVLRPLFPPGYCFDTQVVATVQALEAGGDPVVV 132

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           AI  A  AL                +    G    +  G + G  +V+         D  
Sbjct: 133 AINAASAALC-------------VSNIPWDGPAGCVRIGRVDGKLVVNPS------PDTF 173

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDH---------FFAMLNLAKDRIADLIKLQKD 236
           +     D G    +  + E      +            + L LA   +A LI+ Q+ 
Sbjct: 174 SPTAWNDGGGFDLLYAANEHRVLMIEMGGGPTGERLMDSALKLAHKHVAPLIEAQRA 230


>gi|271963663|ref|YP_003337859.1| polyribonucleotide nucleotidyltransferase [Streptosporangium roseum
           DSM 43021]
 gi|270506838|gb|ACZ85116.1| Polyribonucleotide nucleotidyltransferase [Streptosporangium roseum
           DSM 43021]
          Length = 773

 Score = 92.1 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 92/249 (36%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R+++    V     GS L + G+T +L   TL     E++   +   + 
Sbjct: 337 VRIDGRGVKDIRQLNAEVHVVPRVHGSALFERGETQILGITTLNMLRMEQMIDTLNPERT 396

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 397 KRYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPAREEFPYAIRQVS 452

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           + + ++G T   ++  + +AL D                 LKG VA I+ G++       
Sbjct: 453 EALGSNGSTSMGSVCASTMALLDAGV-------------PLKGIVAGIAMGLINEGDQYV 499

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T    I  +Q   +          A L  AK     +I 
Sbjct: 500 TLTDILGAEDAMGDMDFKVAGTKDV-ITALQLDTKLDGIPASVLAAALKQAKGARLAIID 558

Query: 233 LQKDVISNE 241
           + ++ I + 
Sbjct: 559 VMQEAIDSP 567



 Score = 63.6 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 75/243 (30%), Gaps = 39/243 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      +++ A GS +V   D T +L+  T     +E +  +             G 
Sbjct: 19  RTIRFETGRLARQAAGSAVVYLDDETMVLSATTASKNPKENLDFFPLTVDVEERMYAAGR 78

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q++     +  D   
Sbjct: 79  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFVKGLRNEIQVVATIMALNPDHLY 132

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A ++                      G +  +   ++ G  +    + E +  
Sbjct: 133 DVVAINAASLSTQLAGL-------------PFSGPIGGVRVALIEGQWVAFPTHSELANA 179

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
             D              I+ V+  + R T           +++     L  +K  I  L 
Sbjct: 180 TFDMVVAGRVLEDGDVAIMMVEAESTRDTLKLVADGAVAPTEETVAQGLEASKPFIKVLC 239

Query: 232 KLQ 234
           + Q
Sbjct: 240 EAQ 242


>gi|225028434|ref|ZP_03717626.1| hypothetical protein EUBHAL_02708 [Eubacterium hallii DSM 3353]
 gi|224954232|gb|EEG35441.1| hypothetical protein EUBHAL_02708 [Eubacterium hallii DSM 3353]
          Length = 696

 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 80/226 (35%), Gaps = 21/226 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  N++R ++    +     GS +   G T ++T  TL         +     +T+
Sbjct: 313 RPDGRAINEIRPLAAEIDLLPRVHGSGMFTRGQTQIMTITTLAPLSEAQKIDGLDANVTS 372

Query: 62  EYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           +  M   +  +    E    R  G R      +  RAL  V+         I    + ++
Sbjct: 373 KRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVLPSEDEFPYAIRTVSETLE 432

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY------PI 174
           ++G T  A+I  + ++L                   +K  VA IS G++ G        +
Sbjct: 433 SNGSTSQASICASTLSLMAAGV-------------PIKKPVAGISTGLVTGDSDDDYIVL 479

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
            D+   ED   D+D     T  G I  +Q   +    + D     +
Sbjct: 480 TDIQGLEDFFGDMDFKVAGTHDG-ITAIQMDIKIHGLTPDIIREAI 524



 Score = 82.8 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 81/226 (35%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+  A G+ L+++GDT +L+TAT      E +  +  + +        G +
Sbjct: 12  RTLTVEIGKVAAQANGAALMRYGDTVVLSTATASEKPREGIDFFPLSVEFEEKMYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 72  P---GGFNKRE---GKASEHAVLTSRVIDRPMRPLFPKDYRNDVTLNNLVMAVDPDCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA VA                      G +A    G++ G  IV+    +    D
Sbjct: 126 VTAMLGASVA-------------TSISDIPFDGPIAGTRIGLIDGEFIVNPTADQQLVSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +D     +  A +   ++IK
Sbjct: 173 LALTVASTAE-KVIMIEAGANEVP--EDKMIEAIFKAHEVNKEVIK 215


>gi|303273102|ref|XP_003055912.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461996|gb|EEH59288.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 823

 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 75/240 (31%), Gaps = 14/240 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R  GR    +R IS          GS L   G+T  +  ATL  +        I      
Sbjct: 376 RQDGRDVYTVRPISCEGGFLHRTHGSSLFTRGETQAIAAATLGSQSDAQRFDGIAEMDDR 435

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A S R+ G       +  RAL  V+         + ++  
Sbjct: 436 RFYLHYFFPPSSVGECGRVGAASRREVGHG----NLAERALAPVLPSKDEFPFTVRLEST 491

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A +    +AL D    +        +  VL                + D+
Sbjct: 492 ITESNGSSSMATVCAGCLALQDAGVPIRRKVAGIAMGLVLGDETKGE-----DAIVLTDI 546

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              ED+  D+D        G +   Q   +    S       L  A++ +  ++      
Sbjct: 547 LGSEDALGDMDFKVAGDGEG-MSAFQMDIKVEGISLPVMRTALERAREGLIHILGEMDKA 605



 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 70/209 (33%), Gaps = 25/209 (11%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           ++ +      K A G+ +V  G+T +  T      V   + +     +T  Y M   S  
Sbjct: 33  QVVVETGKIGKQANGAVIVSEGETQMYVTICAGRDV---VADGGFVPLTVNY-MERFSAA 88

Query: 72  NRVKREAVSGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            R          G R  E  I R++ R LR ++  +     QI+    V+  DG   T  
Sbjct: 89  GRTSGGYRKRDGGVREHETLIGRLVDRPLRPMIPKAWAYETQILQ--WVLSYDGNRST-- 144

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--YPIVDLDYGEDSTIDV 187
                    D L      +        L   V  +  G L G   PIV+    +     +
Sbjct: 145 ---------DALAITAASAAAAVSDVPLSKPVCGVRVGFLPGDATPIVNPTTEQMENSRL 195

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHF 216
           D     T+   ++ ++G  +    S D  
Sbjct: 196 DLLLAGTEDA-VMMIEGYGD--FLSVDEM 221


>gi|38234048|ref|NP_939815.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           diphtheriae NCTC 13129]
 gi|81564774|sp|Q6NGP1|PNP_CORDI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|38200310|emb|CAE49995.1| guanosine pentaphosphate synthetase/ polyribonucleotide
           nucleotidyltransferase [Corynebacterium diphtheriae]
          Length = 755

 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 93/255 (36%), Gaps = 34/255 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
            R+ GR    +R++ +   +   A GS L + G+T +L   T      +E+++      T
Sbjct: 369 FRIDGRGVTDIRDLGVEVDLIPRAHGSSLFERGETQIL-GVTTLDMLKMEQQIDSLTPAT 427

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              +I   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 428 SKRYIH-HYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVIPSREEFPYAIRQ 482

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP- 173
             + + ++G T   ++  + ++L++                 LK  VA I+ G++     
Sbjct: 483 VSEALGSNGSTSMGSVCASTLSLYNAGV-------------PLKAPVAGIAMGLVSDEVD 529

Query: 174 -------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                  + D+   ED+  D+D     T    I  +Q   +      +     L+ A D 
Sbjct: 530 GETRYVALTDILGAEDAFGDMDFKVAGTRQF-ITALQLDTKLDGIPSEVLAQALSQANDA 588

Query: 227 IADLIKLQKDVISNE 241
              ++    +VI   
Sbjct: 589 RNTILDTMAEVIETP 603



 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 49/151 (32%), Gaps = 12/151 (7%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      +++ A+GS      D T LL T T      E    +             G 
Sbjct: 33  RTIRFETGQLARQADGSVTTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERMYAAGR 92

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q++I    +      
Sbjct: 93  IP---GSFFRRE---GRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSVNPQDMY 146

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQV 156
              AI GA  A       +       +++ +
Sbjct: 147 DVVAINGASAATQLSGLPVSGPVGGVRMALI 177


>gi|68074995|ref|XP_679414.1| exosome complex exonuclease [Plasmodium berghei strain ANKA]
 gi|56500153|emb|CAI00593.1| exosome complex exonuclease, putative [Plasmodium berghei]
          Length = 511

 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 92/261 (35%), Gaps = 31/261 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR     R +S+         G+  V  G+T ++   T  E V  + +    G I 
Sbjct: 19  LRLDGRNFEDSRNVSI---YFLGDYGNVEVSIGNTKVVCKIT-SEIVKPYDKKPNEGIIK 74

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA-----LGSRQII-- 113
               +   +T N         +      EI+ +I R  ++   L+      +  +++   
Sbjct: 75  INLDVESFNTYN------DISKISDECLEIKNLIERIFKASNILNFESLCIIPYKKVWCL 128

Query: 114 -IDCDVIQADGGTRTAAITGAWVALHDC------------LQHMEDCSNKFQLSQVLKGH 160
            I+  VI+ DG    +    A+ AL               +   E+  N   LS      
Sbjct: 129 LINITVIENDGNLYDSCYLSAYSALLHFRNSSVDIDNTGNVIIDEEEVNYTSLSVHNSPI 188

Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +   +        ++D    E+  +    +  +  + +++ +         S D     +
Sbjct: 189 LTTFAYFNFEEICLIDPSLYEEEFMSSKLSIAINKNENLISILKPG-GLPISYDKILQGI 247

Query: 221 NLAKDRIADLIKLQKDVISNE 241
            LAK R+  ++K+ KD +  +
Sbjct: 248 ELAKKRVKSILKILKDALKED 268


>gi|183981938|ref|YP_001850229.1| bifunctional protein polyribonucleotide nucleotidyltransferase GpsI
           [Mycobacterium marinum M]
 gi|226702666|sp|B2HKV3|PNP_MYCMM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|183175264|gb|ACC40374.1| bifunctional protein polyribonucleotide nucleotidyltransferase GpsI
           [Mycobacterium marinum M]
          Length = 762

 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 12/243 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    +   A GS L + G+T +L   T  + V M  +    G  T
Sbjct: 351 FRIDGRGITDIRALSAEVALVPRAHGSALFERGETQIL-GVTTLDMVKMAQQIDSLGPET 409

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 410 TKRYMHHYNFPPFSTGETGRVGSPKRREIGHG----ALAERALMPVLPSVEEFPYAIRQV 465

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            + + ++G T   ++  + +AL +    ++       +  ++   V            + 
Sbjct: 466 SEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMG-LVSDDVEVDGKTERRFVTLT 524

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED+  D+D     T    +  +Q   +            L  AKD    ++++  
Sbjct: 525 DILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALAQAKDARLTILEVMA 583

Query: 236 DVI 238
           + I
Sbjct: 584 EAI 586



 Score = 55.1 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 78/248 (31%), Gaps = 40/248 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM--LPR 68
           R I      +++ A GS +    D ++L +AT   K P    +     +  E  M    R
Sbjct: 25  RTIRFETGRLAQQAAGSVVAYLDDENMLLSATTASKNPKEHFDFFPLTVDVEERMYAAGR 84

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR    +    R+I R LR           Q+++    +  +      
Sbjct: 85  IPGSFFRRE---GRPSTDAILTCRLIDRPLRPSFVNGLRNEIQVVVTILSLDPNDLYDVV 141

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE------- 181
           AI  A  +                      G V  +   ++ G  +   +  +       
Sbjct: 142 AINAASASTQLAGL-------------PFSGPVGGVRVALIDGQWVAFPNVEQLERAVFD 188

Query: 182 ----------DSTIDVDANFVMTDS---GHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                     +     D   +M ++     ++E+      A  ++      L  AK  IA
Sbjct: 189 MVVAGRIVGTEEDGTPDVAIMMVEAEATDKVIELVEGGAPAP-TESVVAQGLEAAKPFIA 247

Query: 229 DLIKLQKD 236
            L   Q++
Sbjct: 248 ALCTAQQE 255


>gi|303286903|ref|XP_003062741.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456258|gb|EEH53560.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 846

 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 90/239 (37%), Gaps = 38/239 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-----NTK 55
           +R+ GR+  ++R ++          GS + + G+T  L T T+   V  + R       K
Sbjct: 395 VRVDGRKLTELRSLAAEVGAIPVVHGSSVFERGNTQALATVTIG-SVDDFQRLDAPVGPK 453

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +      Y     S     +R  +S R+ G       +  ++L  ++         + ++
Sbjct: 454 NKKFMLHYAFPSFSINETPRRGGLSRREIGHG----ALAEKSLAGMIPDDDAYPFAVRVN 509

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            + ++++G +  AA+    +AL D                 +  HV AIS G++      
Sbjct: 510 AETLESNGSSSMAAVCAGSLALMDAGV-------------PIAEHVGAISVGLVMDEDED 556

Query: 173 -------PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ----DHFFAML 220
                   + D+   ED   D+D     T  G I  +Q   + A+ ++    D  +A +
Sbjct: 557 GNVTRHALLSDIMGLEDVLGDMDFKIAGT-RGGITGIQAPLDEASVARNQVIDEMYAAI 614



 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 75/230 (32%), Gaps = 26/230 (11%)

Query: 14  ISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPM----WIRNTKHGWITAEYGMLPR 68
           I+         A+G+ +   GD  ++  A    +       +  N ++    + YG +P 
Sbjct: 88  IAFETGRLARLADGAVMASMGDNRVMCAAVAAREPDPNAGFFPLNVEYRERASAYGKIP- 146

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
           ST  R +     G    R     R++ RA+R +   +      +                
Sbjct: 147 STFTRRE-----GAPKDREVLAMRVVDRAIRPLFPKAFRNDTSVQAIVLASDRSLDPSVL 201

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  ALH               S    G V A+   ++    ++  +  + +  + +
Sbjct: 202 AVNGASAALH-------------ASSIPWNGPVGAVRVAVVNDGEVIVTNPDDATRAESE 248

Query: 189 ANFVMTD-SGHIVEVQGSA-ERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              +        + ++ SA +R    +      L  A D    LI  Q+ 
Sbjct: 249 FELLYAGTEDRALMIEASATKRGGVPEAVVAKALRAAHDAAKLLIAPQRR 298


>gi|160892563|ref|ZP_02073353.1| hypothetical protein CLOL250_00092 [Clostridium sp. L2-50]
 gi|156865604|gb|EDO59035.1| hypothetical protein CLOL250_00092 [Clostridium sp. L2-50]
          Length = 700

 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 76/227 (33%), Gaps = 23/227 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWIT 60
           R  GR  NQ+R ++    +     GS +   G T +    TL        I       ++
Sbjct: 315 RPDGRAINQIRPLAAEVDIIPRVHGSAMFTRGQTQICDIVTLAPLSEIQKIDGLDENVVS 374

Query: 61  AEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             Y M   +  +    E    R  G R      +  RAL  V+         I    +  
Sbjct: 375 KRY-MHHYNFPSYSVGETKVSRGPGRREIGHGALAERALLPVLPSVEEFPYAIRAVSETF 433

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG------YP 173
           +++G T  A+   + ++L                   LK  VA ISCG++ G        
Sbjct: 434 ESNGSTSMASTCASCMSLMAAGV-------------PLKSMVAGISCGLVTGDTDDDYVV 480

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           + D+   ED   D+D     T  G I  +Q   +    ++      +
Sbjct: 481 LTDIQGLEDFFGDMDFKVTGTYKG-ITAIQMDIKIHGLTRPIVEEAI 526



 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 74/217 (34%), Gaps = 26/217 (11%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           V+  A G+  + +GDT +L+T T      + +  +  + ++       G +P   G   K
Sbjct: 24  VAAQANGAAFMHYGDTTVLSTITASEKPRDGIDFFPLSVEYEEKMYAVGKIP---GGFNK 80

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE   G+    +    R+I R +R +          +      +  +      A+ G+ +
Sbjct: 81  RE---GKASENAVLTSRVIDRPMRPLFPKDYRNDVTLNNLVTSVDPECRPELVAMLGSAI 137

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
           A                      G  A    GM+ G  I++    +    D+      T 
Sbjct: 138 ATA-------------ISDVPFCGPCAMTQVGMIDGEFIINPSQKQWDEGDLKLTVASTS 184

Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +  ++ ++  A      +D     +  A D    +I+
Sbjct: 185 T-KVIMIEAGANEIP--EDKMIEAIYKAHDVNLSIIE 218


>gi|308800758|ref|XP_003075160.1| putative polyribonucleotide nucleotidyltra (ISS) [Ostreococcus
           tauri]
 gi|116061714|emb|CAL52432.1| putative polyribonucleotide nucleotidyltra (ISS) [Ostreococcus
           tauri]
          Length = 620

 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 82/255 (32%), Gaps = 34/255 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R +     +     GS L + G+T  L T TL           +      
Sbjct: 210 RVDGRGLYDLRALDGVAGLMPIVHGSALFERGNTQALATITLGSLDDSQKLDNLTGPTSK 269

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +   Y     S      R       G  +     +  ++L  V          + ++ +
Sbjct: 270 RLILHYSFPSFSVNETGARGISRREVGHGA-----LAEKSLLGVFPDEESFPFAVRVNTE 324

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
            ++++G +  AA+    +AL D                 +K HV AIS G++        
Sbjct: 325 TLESNGSSSMAAVCSGSMALMDAGV-------------PIKEHVGAISIGLIMDEDETTR 371

Query: 173 ------PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                  + D+   ED   D+D     T +G +  +Q   +      +     L+ A   
Sbjct: 372 EVKRYKLMDDIMGLEDVLGDMDFKIAGTRTG-VTGIQLDCKPMGIPLEILIEALDRASAA 430

Query: 227 IADLIKLQKDVISNE 241
              +I + +  +   
Sbjct: 431 RQKVIDVMERAVKTP 445


>gi|314954342|gb|EFS98748.1| polyribonucleotide nucleotidyltransferase [Propionibacterium acnes
           HL027PA1]
          Length = 733

 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 85/250 (34%), Gaps = 23/250 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-----IRNTK 55
           +R+ GR    +R +S    +     GS L + G+T +L   +    + M      +    
Sbjct: 339 VRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQIL-GVSTLNMLDMEQKLDTLSPEN 397

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y M P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 398 PRRYMHNYNMPPYSTGETGRVGSPKRREIGHG----NLAERALIPVLPTREEFPYAIREV 453

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            + I ++G T   ++  + +AL +    +        +          +S     G    
Sbjct: 454 SEAIGSNGSTSMGSVCASTLALLNAGVPLRASVAGIAMG--------LMSETDEDGKTKY 505

Query: 173 -PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED+  D+D     T    +  +Q   +      D     L  AK+    ++
Sbjct: 506 LALTDILGAEDALGDMDFKVAGTSEF-VTALQLDTKLDGIPADVLAGALKQAKEARTAIL 564

Query: 232 KLQKDVISNE 241
           ++  + I + 
Sbjct: 565 EVMNEAIDSP 574



 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 73/249 (29%), Gaps = 40/249 (16%)

Query: 14  ISLTRRVS-KYAEGSCLVKF-GDTHLL----TTATLEEKVPMWIRNTKHGWITAEYGMLP 67
           +     +  + A+GS  V   GDT LL       T  + +  +             G +P
Sbjct: 23  VRFEAGLLAQQADGSAAVYLDGDTMLLSATTAAKTPRDSIDFFPLTVDVEERMYAAGRIP 82

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G+  +RE   GR    +    R+I R LR           Q+++    +        
Sbjct: 83  ---GSFFRRE---GRPSEGAILACRLIDRPLRPSFVKGLRNEVQVVVTVMALNPAVYYDV 136

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AI  A ++                      G +  +   ++    +      +      
Sbjct: 137 VAINAASMSTQLAGL-------------PFSGPIGGVRMALIDDQWVCFPSVDQRKESTF 183

Query: 188 DANFV----MTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKL 233
           D              I+ V+  +  AT+          +++     L  AK  I  L   
Sbjct: 184 DMVVAGRVLADGDVAIMMVEAESTPATWGLVRGGRTAPTEEVVATGLEAAKPFIKVLCDA 243

Query: 234 QKDVISNEV 242
           Q   ++ ++
Sbjct: 244 Q-VALAAKL 251


>gi|317012994|gb|ADU83602.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           Lithuania75]
          Length = 688

 Score = 92.1 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 87/249 (34%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------------TLEEKVP 48
           +R   R   ++R I +   +   A  S L   G T  L               +LE K P
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGATSRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK    
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIRLEVLYQALLQAKKARE 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 77/218 (35%), Gaps = 30/218 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S + + G T +L +  +E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLMYRLGKTIILASVCVERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
              L     +    +        +K  V+A     +    I++ +    +   +D     
Sbjct: 122 ---LQVSALNAASAALFLAHIAPIK-SVSACRIARIDNEFIINPNTSLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEVQGSAER-ATFSQDHFFAMLNLAKDRIAD 229
           T +S +++E++   ++     +      L LA+  + +
Sbjct: 178 TKESLNMIEMRSLGQKLNALEEPLMLKALELAQKSLKE 215


>gi|300868336|ref|ZP_07112962.1| Polyribonucleotide nucleotidyltransferase [Oscillatoria sp. PCC
           6506]
 gi|300333629|emb|CBN58148.1| Polyribonucleotide nucleotidyltransferase [Oscillatoria sp. PCC
           6506]
          Length = 714

 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 81/230 (35%), Gaps = 20/230 (8%)

Query: 1   MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----T 54
           +R+ GR+ +++R +S    V      GS L   G T +++  TL                
Sbjct: 323 VRVDGRKLDEVRPVSCRVSVLPSRVHGSSLFNRGLTQVMSAVTLGTPGDAQDLGDDLHPQ 382

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y   P S G      +   R+ G       +  RA+  V+   A     I +
Sbjct: 383 DEKRYLHHYNFPPYSVGETRPMRSPGRREIGHG----ALAERAILPVLPPQADFPYVIRV 438

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             +V+ ++G T   ++  + +AL D    +    +   +  + +G              +
Sbjct: 439 VSEVLSSNGSTSMGSVCASTLALMDAGVPLIQPVSGAAMGLIKEGDEV---------RIL 489

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
            D+   ED   D+D     TD+G I  +Q   + +          ++ AK
Sbjct: 490 TDIQGIEDFLGDMDFKVAGTDTG-ITALQMDMKISGLPLQVIAEAIHKAK 538



 Score = 85.1 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 88/233 (37%), Gaps = 26/233 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLP 67
           R+I L   +    A G+ L++ GDT +L TAT     E +        +       G +P
Sbjct: 13  RDIRLKIGLLAPQAGGAVLIQSGDTSVLVTATRAQGREGIDFLPLLVDYEERLYAGGKIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
                R  R        GR      +I R LR +         Q++     +  +     
Sbjct: 73  GGFLRREGRPPEKVTLTGR------LIDRPLRPLFPSWLRDDIQVVATTLSMDEEVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA VA+                     G +AA+  G++    I++  Y E  T ++
Sbjct: 127 LAVTGASVAVLLA-------------KMPFYGPMAAVRVGLVGDDFIINPTYKEIKTGEL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     +  G ++ V+  A +    +      ++   +  +DLI+ Q+++++ 
Sbjct: 174 DLVVAGSPDG-VIMVEAGANQ--LPERDIIEAIDFGYEAASDLIQAQREIMAE 223


>gi|108563579|ref|YP_627895.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           HPAG1]
 gi|123373705|sp|Q1CS51|PNP_HELPH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|107837352|gb|ABF85221.1| polynucleotide phosphorylase [Helicobacter pylori HPAG1]
          Length = 688

 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 88/249 (35%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------------TLEEKVP 48
           +R   R   ++R I +   +   A  S L   G T  L               +LE K P
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGAASRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDHAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK+   
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEILYQALLQAKEARK 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 75/222 (33%), Gaps = 38/222 (17%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V K A  S L + G T +L +  +E +      +     +  ++     + G   K    
Sbjct: 20  VVKQATSSLLYRLGKTIILASVCVERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
              L     +    +        +K  V+A     +    I++ +    +   +D     
Sbjct: 122 ---LQVSALNAASAALFLAHIAPIK-SVSACRIARIGNEFIINPNTSLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEV-----QGSAERATFSQDHFFAMLNLAKDRIAD 229
           T +S +++E+     Q +A             L LA+  + +
Sbjct: 178 TKESLNMIEMRSLGQQLNALEEPL----MLKALELAQKSLKE 215


>gi|317967932|ref|ZP_07969322.1| polynucleotide phosphorylase/polyadenylase [Synechococcus sp.
           CB0205]
          Length = 680

 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 87/249 (34%), Gaps = 27/249 (10%)

Query: 2   RLSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           R+ GR  +++R IS    V  K   GS L + G T +L+ ATL           +  +  
Sbjct: 293 RVDGRNLDEVRPISAAAGVLPKRVHGSGLFQRGMTQVLSCATLGTPSDAQEMDDLNPSNE 352

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G      +   R+ G       +  RAL  V+         + +  
Sbjct: 353 KTYLHHYNFPPYSVGETRPMRSPGRREIGHG----ALAERALIPVLPSKESFPYVLRVVS 408

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----Y 172
           + + ++G T   ++ G+ +AL D                 LK  V+  + G++       
Sbjct: 409 ECLSSNGSTSMGSVCGSTLALMDAGV-------------PLKAPVSGAAMGLIKEGSEVR 455

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED   D+D     T+ G I  +Q   +            +N A+     +++
Sbjct: 456 ILTDIQGIEDFLGDMDFKVAGTEKG-ITALQMDMKITGLEVKTVAEAINQARPARLHILE 514

Query: 233 LQKDVISNE 241
                I   
Sbjct: 515 KMLAAIDKP 523



 Score = 85.9 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 85/215 (39%), Gaps = 25/215 (11%)

Query: 29  LVKFGDTHLLTTAT---LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGG 85
           +V+ GDT +L TAT     E +        +       G +P   G+ ++RE+   R   
Sbjct: 1   MVECGDTSVLVTATRSGGREGIDFLPLICDYEERLYAAGRIP---GSFMRRES---RPPE 54

Query: 86  RSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHME 145
           R+  I R+I R +R +         Q++  C  +         A+TGA +A         
Sbjct: 55  RATLIARLIDRPMRPLFPSWLRDDMQVVATCMSLDERVPPDVLAVTGASLATLLA----- 109

Query: 146 DCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
                        G +AA+  G+L    I++  Y E    ++D     T  G ++ V+  
Sbjct: 110 --------KIPFNGPMAAVRVGLLGDDFILNPSYREIERSELDLVVAGTPQG-VIMVEAG 160

Query: 206 AERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           A +    +      ++   + + +LIK+Q+ ++  
Sbjct: 161 ANQ--LPEQDVIEAIDFGYEAVCELIKVQQTLLKE 193


>gi|298735771|ref|YP_003728296.1| polyribonucleotide nucleotidyltransferase [Helicobacter pylori B8]
 gi|298354960|emb|CBI65832.1| polyribonucleotide nucleotidyltransferase [Helicobacter pylori B8]
          Length = 688

 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 88/249 (35%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------------TLEEKVP 48
           +R   R   ++R I +   +   A  S L   G T  L               +LE K P
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGATSRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK+   
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIRLEVLYQALLQAKEARK 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 79/230 (34%), Gaps = 38/230 (16%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S + + G T +L +  +E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLMYRLGKTIILASVCVERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
              L     +    +        +K  V+A     +    I++ +    +   +D     
Sbjct: 122 ---LQVSALNAASAALFLAHIAPIK-SVSACRIARVDNEFIINPNTSLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEV-----QGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           T +S +++E+     Q +A             L LA+  + +   L ++ 
Sbjct: 178 TKESLNMIEMRSLGQQLNALEEPL----MLKALELAQKSLKETCTLYEEA 223


>gi|145346010|ref|XP_001417490.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577717|gb|ABO95783.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 240

 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 74/251 (29%), Gaps = 36/251 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R +   R + +   V   A GS  V+ GDT          +    +     G +  
Sbjct: 8   REDARADAHCRALVVALDVVPAAAGSAYVELGDTKASCAVYGPRRGRAELAGVDRGTLDV 67

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQE-----IQRMIGRALRSVVDLSALGSRQIIIDC 116
           +    P +TG R    A   R  GR        + R +  AL + V   +    Q+    
Sbjct: 68  DAYRAPFATGARALDGANRARARGRGARTADDGLARTVKEALSASVLTESFPKTQVDACV 127

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
            V+ A GG                   +   +   +     +  V+A  C       ++D
Sbjct: 128 TVLDARGG-------------EAVACVLAASAALARAGVACRDLVSACECARAGERMMLD 174

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERA-----TFSQ---DHFFAMLNLAKDRIA 228
               E          + T  G +   Q S+  A     TF +   D     L+       
Sbjct: 175 PTREE----------IETSDGMVFLAQMSSMEAYAKTETFGRWNADETERALDACAAGCN 224

Query: 229 DLIKLQKDVIS 239
               + ++ + 
Sbjct: 225 RFDAVLREALR 235


>gi|326435509|gb|EGD81079.1| hypothetical protein PTSG_11024 [Salpingoeca sp. ATCC 50818]
          Length = 255

 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 74/223 (33%), Gaps = 28/223 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR     R  ++       ++GSCLV  G T ++    LE   P  + N   GWI 
Sbjct: 27  VRPDGRSREDPRPCAIAPGTITSSDGSCLVTLGKTSVVCGIKLEFADPP-LDNDNVGWIV 85

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALG------SRQI 112
               + P  +          G     +Q +   I       +++D   L       S  +
Sbjct: 86  PTVTLPPLCSD-----RFTPGPPPAEAQRLSEFITDIFCSDTMLDKHDLCIIPGKLSWAL 140

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHME----DCSNKFQLSQV---------LKG 159
            +D   +  DG    A +  A  AL            D S+   L  +         LK 
Sbjct: 141 YLDIQCVNYDGNVVDACVLAAMAALQSVTLPKVELPSDLSDLEGLPSIDRSAGHALNLKR 200

Query: 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEV 202
            V + +  +L    + D    E+         V+ D+G I  +
Sbjct: 201 TVTSCTFAVLDD-VLTDPCLEEEDLCSASMTVVVDDAGSICSM 242


>gi|238583089|ref|XP_002390134.1| hypothetical protein MPER_10647 [Moniliophthora perniciosa FA553]
 gi|215453188|gb|EEB91064.1| hypothetical protein MPER_10647 [Moniliophthora perniciosa FA553]
          Length = 172

 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 50/144 (34%), Gaps = 16/144 (11%)

Query: 98  LRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL 157
           +  V+  S     QI I   V+Q DGG   A I    +AL +                 L
Sbjct: 21  IEPVIQTSLYPRSQIDIYVQVLQQDGGVLQACINATTLALANAGI-------------PL 67

Query: 158 KGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
              V A++ G+    P++DL   E++ +      VM  SG +  V           D F 
Sbjct: 68  LDFVCAVTGGVHSTSPLLDLTQLEENDLPNVTVAVMPRSGKVTLVSM---ETRLHVDRFE 124

Query: 218 AMLNLAKDRIADLIKLQKDVISNE 241
            +  LA +    +    K  +   
Sbjct: 125 EIFRLAGEAGTVIHGEMKRAVKER 148


>gi|291529163|emb|CBK94749.1| polyribonucleotide nucleotidyltransferase [Eubacterium rectale
           M104/1]
          Length = 696

 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 87/252 (34%), Gaps = 32/252 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R ++    +     GS +   G T +    TL     +   +     IT 
Sbjct: 312 RPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEIQKIDGLDANITT 371

Query: 62  -----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G       VS   G R      +  +AL  V+         I    
Sbjct: 372 KRYMHHYNFPAYSVGETK----VSRGPGRREIGHGALAEKALVPVLPSVEEFPYTIRAVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +  +++G T  A+   + ++L                   +K  VA ISCG++ G     
Sbjct: 428 ETFESNGSTSMASTCASCMSLMAAGV-------------PIKAMVAGISCGLVTGDTDDD 474

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G I  +Q   +    ++      +  A+ R A L
Sbjct: 475 FLVLTDIQGLEDFFGDMDFKVTGTHKG-ITAIQMDIKIHGLTRPIVEEAI--ARTREARL 531

Query: 231 IKLQKDVISNEV 242
             +  +V+S  +
Sbjct: 532 Y-IMDEVMSKAI 542



 Score = 68.6 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 74/214 (34%), Gaps = 27/214 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+  A G+  +K+GDT +L+TAT      + V  +  + +        G +
Sbjct: 12  RTLTVDIGRVAAQANGTVFIKYGDTTVLSTATASDKPRDGVDFFPLSVEFEEKMYSVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  +    
Sbjct: 72  P---GGFNKRE---GKASENAILTDRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPECRPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G  +A+H                    G  A    G++ G  IV+    +    D
Sbjct: 126 IVAMIGTALAVH-------------ISDIPFDGPCAMTQMGLVDGEFIVNPSQKQWDEGD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +      T    ++ ++  A      +D     +
Sbjct: 173 LQLTVASTKE-KVIMIEAGANEIP--EDQMIEAI 203


>gi|291525068|emb|CBK90655.1| polyribonucleotide nucleotidyltransferase [Eubacterium rectale DSM
           17629]
          Length = 696

 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 87/252 (34%), Gaps = 32/252 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R ++    +     GS +   G T +    TL     +   +     IT 
Sbjct: 312 RPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEIQKIDGLDANITT 371

Query: 62  -----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G       VS   G R      +  +AL  V+         I    
Sbjct: 372 KRYMHHYNFPAYSVGETK----VSRGPGRREIGHGALAEKALVPVLPSVEEFPYTIRAVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +  +++G T  A+   + ++L                   +K  VA ISCG++ G     
Sbjct: 428 ETFESNGSTSMASTCASCMSLMAAGV-------------PIKAMVAGISCGLVTGDTDDD 474

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G I  +Q   +    ++      +  A+ R A L
Sbjct: 475 FLVLTDIQGLEDFFGDMDFKVTGTHKG-ITAIQMDIKIHGLTRPIVEEAI--ARTREARL 531

Query: 231 IKLQKDVISNEV 242
             +  +V+S  +
Sbjct: 532 Y-IMDEVMSKAI 542



 Score = 69.0 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 74/214 (34%), Gaps = 27/214 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+  A G+  +K+GDT +L+TAT      + V  +  + +        G +
Sbjct: 12  RTLTVDIGRVAAQANGAVFIKYGDTTVLSTATASDKPRDGVDFFPLSVEFEEKMYSVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  +    
Sbjct: 72  P---GGFNKRE---GKASENAILTDRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPECRPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G  +A+H                    G  A    G++ G  IV+    +    D
Sbjct: 126 IVAMIGTALAVH-------------ISDIPFDGPCAMTQMGLVDGEFIVNPSQKQWDEGD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +      T    ++ ++  A      +D     +
Sbjct: 173 LQLTVASTKE-KVIMIEAGANEIP--EDQMIEAI 203


>gi|302791854|ref|XP_002977693.1| hypothetical protein SELMODRAFT_176463 [Selaginella moellendorffii]
 gi|300154396|gb|EFJ21031.1| hypothetical protein SELMODRAFT_176463 [Selaginella moellendorffii]
          Length = 291

 Score = 91.7 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 58/268 (21%), Positives = 91/268 (33%), Gaps = 34/268 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR   + R  S++      A+GS LVK G+T +L  A LE   P        G ++
Sbjct: 27  VRPDGRPLTRSRPTSVSFNAVSSADGSALVKIGNTTMLAGAKLETMEPA-ADTPDQGCLS 85

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QI 112
            ++ M P  +          GR    +  I   +  AL    VVDL  L          I
Sbjct: 86  VDFVMPPICSP-----RVRPGRPAEEAYVITEQLQNALLSSGVVDLRELSIVSGKAAWMI 140

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQV-------------- 156
            +D   + ADG    AA+  +  AL              K   +                
Sbjct: 141 YLDVYCLDADGSLLDAALLASVAALAHLQVPAICVRSEGKITKAPPDAQASSDGIEFTQP 200

Query: 157 ----LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFS 212
               L     A++  M     I D    E++ +D     ++  S  I+ +  +    T S
Sbjct: 201 RRLNLGEFPFALTVAMNQKSLIADPTAEEEAILDTKMIVILNSSQKIIALHKAGGSTTAS 260

Query: 213 QDHFFAMLNLAKDRIADLIKLQKDVISN 240
                  L LA  R   L K+ ++ +  
Sbjct: 261 TATIQDCLALAMRRRKTLQKVLEEALRK 288


>gi|15645827|ref|NP_208005.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           26695]
 gi|81341641|sp|O25812|PNP_HELPY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|2314375|gb|AAD08258.1| polynucleotide phosphorylase (pnp) [Helicobacter pylori 26695]
          Length = 688

 Score = 91.7 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 88/249 (35%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------------TLEEKVP 48
           +R   R   ++R I +   +   A  S L   G T  L               +LE K P
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGAASRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK+   
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIKLEILYQALLQAKEARK 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 76/218 (34%), Gaps = 30/218 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S L + G T +L +  +E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLLYRLGKTIILASVCVERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
              L     +    +        +K  V+A     +    I++      +   +D     
Sbjct: 122 ---LQVSALNAASAALFLAHIAPIK-SVSACRIARMDNEFIINPSASLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEVQGSAER-ATFSQDHFFAMLNLAKDRIAD 229
           T +S +++E++   ++     +      L LA+  + +
Sbjct: 178 TKESLNMIEMRSLGQKLNALEEPLMLEALELAQKSLEE 215


>gi|317177956|dbj|BAJ55745.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           F16]
          Length = 688

 Score = 91.7 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 87/249 (34%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------------TLEEKVP 48
           +R   R   ++R I +   +   A  S L   G T  L               +LE K P
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGATSRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK    
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEVLYQALLQAKKARE 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 58.6 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 72/222 (32%), Gaps = 38/222 (17%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S + + G T +L +  +E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLMYRLGKTIILASVCVERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMALSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
                         +  F         V+A     +    I++      +   +D     
Sbjct: 122 ----LQVSALNAASAALFLSHIAPIKSVSACRIARIDNEFIINPSTSLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEV-----QGSAERATFSQDHFFAMLNLAKDRIAD 229
           T +S +++E+     Q +A             L LA+  + +
Sbjct: 178 TKESLNMIEMRSLGQQLNALEEPL----MLKALELAQKSLKE 215


>gi|115446633|ref|NP_001047096.1| Os02g0550700 [Oryza sativa Japonica Group]
 gi|50725756|dbj|BAD33267.1| putative polymyositis/scleroderma autoantigen 1 [Oryza sativa
           Japonica Group]
 gi|113536627|dbj|BAF09010.1| Os02g0550700 [Oryza sativa Japonica Group]
          Length = 395

 Score = 91.7 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 89/255 (34%), Gaps = 37/255 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMWIRNTKHGW 58
           +R+ GR+    R + +   +    +GS  V+ GDT ++   TA L   V  +      G 
Sbjct: 25  LRVDGRRPFDFRRLKI---LFGREDGSAEVQLGDTRVMGYATAQL---VQPYKDRPNEGT 78

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSR------ 110
           +       P +           GR G  + E+ R++ R LR    VD+ +L         
Sbjct: 79  LAIFTEFSPMADPA-----FEPGRPGESAIELGRVVDRGLRESRAVDMESLCVVAGKHVW 133

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQH-------------MEDCSNKFQLSQVL 157
            + +D  ++   G    AA   A  AL    +              + D   +  L   +
Sbjct: 134 SVRVDLHILDNGGNLIDAANIAALAALSTFRRPECTVGGEDGQQVTVHDPEVRDPLPLTI 193

Query: 158 KGHVAAISCGMLC--GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
                A++          ++D  Y E++ +       +  +G +  +Q +      S   
Sbjct: 194 HHLPIAVTFAYFGEGNIMVIDPTYKEEAVMGGRMTATINSNGDVCSIQKAGGEGVMS-SV 252

Query: 216 FFAMLNLAKDRIADL 230
               L +A  + AD+
Sbjct: 253 IMQCLRIASVKAADI 267


>gi|254479099|ref|ZP_05092451.1| polyribonucleotide nucleotidyltransferase, RNA binding domain
           family [Carboxydibrachium pacificum DSM 12653]
 gi|214034948|gb|EEB75670.1| polyribonucleotide nucleotidyltransferase, RNA binding domain
           family [Carboxydibrachium pacificum DSM 12653]
          Length = 328

 Score = 91.7 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 85/226 (37%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R++ +    V++ A G+  VK+GDT +L TA       E +  +    ++       G +
Sbjct: 13  RKLVVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEERLYSIGKI 72

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   G+   ++    R+I R +R +         Q+I     +  D    
Sbjct: 73  P---GGFIKRE---GKPSEKAILSARLIDRPIRPLFPEGYRNDVQVIATVLSVDPDAQPE 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ VAL                     G   +++ G++ G  +++  Y +     
Sbjct: 127 IVAMIGSSVALS-------------ISDIPFNGPTGSVAVGLVDGKFVINPTYEQREKSL 173

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    IV V+  A+     ++     +  A   I  +++
Sbjct: 174 MHLVVSGTKDA-IVMVEAGAKEVP--EETILDAIVYAHQYIKQIVE 216


>gi|238924296|ref|YP_002937812.1| polyribonucleotide nucleotidyltransferase [Eubacterium rectale ATCC
           33656]
 gi|238875971|gb|ACR75678.1| polyribonucleotide nucleotidyltransferase [Eubacterium rectale ATCC
           33656]
          Length = 718

 Score = 91.7 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 87/252 (34%), Gaps = 32/252 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R ++    +     GS +   G T +    TL     +   +     IT 
Sbjct: 334 RPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEIQKIDGLDANITT 393

Query: 62  -----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G       VS   G R      +  +AL  V+         I    
Sbjct: 394 KRYMHHYNFPAYSVGETK----VSRGPGRREIGHGALAEKALVPVLPSIEEFPYTIRAVS 449

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +  +++G T  A+   + ++L                   +K  VA ISCG++ G     
Sbjct: 450 ETFESNGSTSMASTCASCMSLMAAGV-------------PIKAMVAGISCGLVTGDTDDD 496

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     T  G I  +Q   +    ++      +  A+ R A L
Sbjct: 497 FLVLTDIQGLEDFFGDMDFKVTGTHKG-ITAIQMDIKIHGLTRPIVEEAI--ARTREARL 553

Query: 231 IKLQKDVISNEV 242
             +  +V+S  +
Sbjct: 554 Y-IMDEVMSKAI 564



 Score = 69.0 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 74/214 (34%), Gaps = 27/214 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+  A G+  +K+GDT +L+TAT      + V  +  + +        G +
Sbjct: 34  RTLTVDIGRVAAQANGAVFIKYGDTTVLSTATASDKPRDGVDFFPLSVEFEEKMYSVGKI 93

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  +    
Sbjct: 94  P---GGFNKRE---GKASENAILTDRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPECRPE 147

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G  +A+H                    G  A    G++ G  IV+    +    D
Sbjct: 148 IVAMIGTALAVH-------------ISDIPFDGPCAMTQMGLVDGEFIVNPSQKQWDEGD 194

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +      T    ++ ++  A      +D     +
Sbjct: 195 LQLTVASTKE-KVIMIEAGANEIP--EDQMIEAI 225


>gi|308062494|gb|ADO04382.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           Cuz20]
          Length = 688

 Score = 91.7 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 87/249 (34%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------------TLEEKVP 48
           +R   R   ++R I +   +   A  S L   G T  L               +LE K P
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGATSRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK    
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEVLYQALLQAKKARE 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 26/216 (12%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S + + G T +L +   E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLMYRLGKTIILASVCAERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
             ++ GR+Q  EI   R+I R LR +         QI +       +   + +A+  A  
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALNAASA 132

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT- 194
            L             F         V+A     +    I++ +    +   +D     T 
Sbjct: 133 TL-------------FLSHIAPLKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTK 179

Query: 195 DSGHIVEVQGSAER-ATFSQDHFFAMLNLAKDRIAD 229
           +S +++E++   ++     +      L LA+  + +
Sbjct: 180 ESLNMIEMRSLGQQLNALEEPSMLKALELAQKSLKE 215


>gi|302786484|ref|XP_002975013.1| hypothetical protein SELMODRAFT_102800 [Selaginella moellendorffii]
 gi|300157172|gb|EFJ23798.1| hypothetical protein SELMODRAFT_102800 [Selaginella moellendorffii]
          Length = 288

 Score = 91.3 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 85/262 (32%), Gaps = 38/262 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR     R +S+   +   A GS  V+ G T ++ +   E   P   R   +G I 
Sbjct: 20  LRSDGRGRYHFRNLSIQVGIIPQANGSARVRLGGTDVIVSVKAELGSPRSGR-PNYGSIE 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL-------RSVVDLSALGSR--- 110
                   +      R          + E+ R + R          + +DLS LG     
Sbjct: 79  VMVECSATAGPEFEGRGGED-----LNMELSRALQRCFVGGPSGAGAAIDLSTLGIVASK 133

Query: 111 ---QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA---- 163
              ++ +DC V+ +DG    A   GA  AL +        +            V      
Sbjct: 134 FCWELFVDCLVVNSDGNLLDALSIGA--ALSNTGIPSVKVTGNTASEDDADLEVGDNPDE 191

Query: 164 ------------ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
                       I+   +  + IVD    E+  +    +  +   G I+ +    +    
Sbjct: 192 FARLDASKVPLIITLTKIGRHYIVDATPEEEMGMSSAVSVAVNSKGLILGLTKRGDGG-L 250

Query: 212 SQDHFFAMLNLAKDRIADLIKL 233
                  M+++AK    DLI L
Sbjct: 251 DPSVVTDMISVAKHIARDLIVL 272


>gi|297380394|gb|ADI35281.1| Polyribonucleotide nucleotidyltransferase [Helicobacter pylori
           v225d]
          Length = 688

 Score = 91.3 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 87/249 (34%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------------TLEEKVP 48
           +R   R   ++R I +   +   A  S L   G T  L               +LE K P
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGATSRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK    
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEILYQALLQAKKARE 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 73/222 (32%), Gaps = 38/222 (17%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S + + G T +L +  +E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLMYRLGKTIILASVCVERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
                         +  F         V+A     +    I++ +    +   +D     
Sbjct: 122 ----LQVSALNAASAALFLSHIAPIKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEV-----QGSAERATFSQDHFFAMLNLAKDRIAD 229
           T +S +++E+     Q +A             L LA+  + +
Sbjct: 178 TKESLNMIEMRSLGQQLNALEEPL----MLKALELAQKSLKE 215


>gi|239626266|ref|ZP_04669297.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520496|gb|EEQ60362.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 706

 Score = 91.3 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 81/230 (35%), Gaps = 29/230 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT-ATLEE--KVPMWIRNTKH 56
           R  GR  +++R ++    +     GS +   G T +L   T A L E  ++     N   
Sbjct: 312 RPDGRAIDEIRHLAAEIDLLPRVHGSGMFTRGQTQILNACTLAPLSEAQRIDGLDENETS 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+  +      I    
Sbjct: 372 KRYMHHYNFPSFSVGETKPSRGPGRREIGHG----ALAERALIPVLPSAEEFPYAIRTVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + ++++G T  A+I  + ++L                   +K  VA ISCG++ G     
Sbjct: 428 ETMESNGSTSQASICASTLSLMAAGV-------------PIKEMVAGISCGLVTGDTDDD 474

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
              + D+   ED   D+D     T +G I  +Q   +    ++      +
Sbjct: 475 YLVLTDIQGLEDFFGDMDFKVGGTKNG-ITAIQMDIKIHGLTRPIIEEAI 523



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 78/226 (34%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R++++    V+  A G+  + +GDT +L TAT      E +  +  + ++       G +
Sbjct: 12  RKLTVEIGRVAAQANGAAFMHYGDTVVLATATASSKPREGIDFFPLSVEYEEKLYSVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 72  P---GGFNKRE---GKASENAVLTCRVIDRPMRPLFPKDYRNDVTLDNIVMSVDPDCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  A    G++ G  +++    +    D
Sbjct: 126 LTAMLGSAIA-------------TSISDIPFAGPCATTQVGLVDGEFVINPTAAQKQVSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +      +  A +   ++I+
Sbjct: 173 MALTVASTRE-KVIMIEAGANEVP--EQKMIDAIFKAHEVNQEIIR 215


>gi|213024185|ref|ZP_03338632.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 204

 Score = 91.3 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 83/205 (40%), Gaps = 27/205 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 15  RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 74

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 75  SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 129

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 130 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 176

Query: 174 IV-DLDYGEDSTIDVDANFVMTDSG 197
           ++ D+   ED   D+D     +  G
Sbjct: 177 VLSDILGDEDHLGDMDFKVAGSRDG 201


>gi|115960400|ref|XP_001175624.1| PREDICTED: similar to ENSANGP00000026025, partial
           [Strongylocentrotus purpuratus]
          Length = 104

 Score = 91.3 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 5/103 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   ++R I L       A+GSC ++  +T ++       +VP       +G +  
Sbjct: 7   RQDGRSPLEIRPIFLKAGAVSQAKGSCYMEMKNTKVICAVYGPREVPRRDGFVINGQLRC 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDL 104
           E+     ++  R         +      +   + +AL   V L
Sbjct: 67  EFKFATFASEVRHGHLTSHTEKD-----LALQVQQALEPAVCL 104


>gi|187471099|sp|B0C1M5|PNP_ACAM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 716

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 92/233 (39%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           REI LT    +  A G  L++ G+T +L TA   +  E +        +       G +P
Sbjct: 13  REIKLTIGRFAPQAGGCVLIESGETSVLVTATRSSGREGIDFLPLLVDYEERLYAAGRVP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   GR   ++    R+I R +R +         QI+     +        
Sbjct: 73  ---GGFLRRE---GRPPEKATLTCRLIDRPMRPLFPNWLRDDLQIVATTISMDEQVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+TGA VA                     KG +AA+  G++    I++  Y E S  ++
Sbjct: 127 LAVTGASVATLLA-------------KIPFKGPMAAVRVGLVGDDFIINPTYEEISEGEL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     +  G ++ V+  A      +      ++   + + DLIK QK++I+ 
Sbjct: 174 DLVVAGSPDG-VIMVEAGANEVA--EQDMIEAIDFGYEVVCDLIKAQKELIAE 223



 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 21/230 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIRN-----T 54
           +R+ GR+ +++R IS    V      GS L   G T +L+ ATL         +     +
Sbjct: 322 VRVDGRKLDEVRPISCNVGVLPQRVHGSGLFNRGLTQVLSIATLGTPGDAQEMDDLHPDS 381

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +  ++   Y   P S G      +   R+ G       +  RAL  ++         + +
Sbjct: 382 QKRYLH-HYNFPPYSVGETRPMRSPGRREVGHG----ALAERALLPMLPSKEEFPYVLRV 436

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             +V+ ++G T   ++ G+ ++L D    +    +   +  + +G              +
Sbjct: 437 VSEVLSSNGSTSMGSVCGSTLSLMDAGVPLAKPVSGAAMGLIKEGEEV---------RVL 487

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
            D+   ED   D+D     T  G I  +Q   +    S       ++ AK
Sbjct: 488 TDIQGIEDFLGDMDFKVAGTADG-ITALQMDMKITGLSMKVIAEAIHQAK 536


>gi|326498189|dbj|BAJ94957.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 273

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 90/255 (35%), Gaps = 37/255 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMWIRNTKHGW 58
           +R+ GR+    R++ +        +GS  V+ G+T ++   TA L   V  +      G 
Sbjct: 24  LRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMGYVTAQL---VQPYKDRPNEGT 77

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSR------ 110
           +       P +           GR G  + E+ R+I R LR    VD+ +L         
Sbjct: 78  LAIFTEFSPMADPA-----FEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAGKHVW 132

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQH-------------MEDCSNKFQLSQVL 157
            + +D  ++  +G    AA   A  AL    +              + D   +  L   +
Sbjct: 133 SVRVDLHILDNEGNLIDAANIAALAALSTFRRPECTVGGDDGQQVTVHDSEVRDPLPLTI 192

Query: 158 KGHVAAISCGMLC--GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
                A++          ++D  Y E++ +       +  +G +  +Q +      S   
Sbjct: 193 HHLPIAVTFAYFGDGNIMVIDPTYKEEAVMGGRMTATINSNGDVCAIQKAGGEGVMS-SV 251

Query: 216 FFAMLNLAKDRIADL 230
               L +A  + AD+
Sbjct: 252 IMQCLRIASVKAADI 266


>gi|325998073|gb|ADZ50281.1| Polyribonucleotide nucleotidyltransferase [Helicobacter pylori
           2017]
          Length = 688

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 87/249 (34%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------------LEEKVP 48
           +R   R   ++R IS+   +   A  S L   G T  L                LE K P
Sbjct: 313 IRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHENLEHKAP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGATSRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDHAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK    
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNVEG-ITAMQMDTKMSGIRLEVLYQALLQAKRARE 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 61.6 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 80/226 (35%), Gaps = 30/226 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S + + G T +L +  +E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLMYRLGKTLILASVCVERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
              L     +    +        +K  V+A     +    I++ +    +   +D     
Sbjct: 122 ---LQVSALNAASAALFLAHIAPIK-SVSACRIARVDNEFIINPNASLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEVQGSAER-ATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           T +S +++E++   ++     +      L LA+  + +   L ++ 
Sbjct: 178 TKESLNMIEMRSLGQKLNALEEPLMLEALELAQKSLKETCALYEEA 223


>gi|160880894|ref|YP_001559862.1| polynucleotide phosphorylase/polyadenylase [Clostridium
           phytofermentans ISDg]
 gi|187610260|sp|A9KNK6|PNP_CLOPH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|160429560|gb|ABX43123.1| Polyribonucleotide nucleotidyltransferase [Clostridium
           phytofermentans ISDg]
          Length = 698

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 89/249 (35%), Gaps = 24/249 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWIT 60
           R  GR+ +Q+R ++    +     GS +   G T +LT  TL        +        +
Sbjct: 313 RPDGREIHQIRRLAAEVDMLPRVHGSGMFTRGQTQILTVTTLAPLSEAQKLDGLDEAEKS 372

Query: 61  AEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
             Y M   +  +    E    R  G R      +  RAL  V+   A     I    + +
Sbjct: 373 KRY-MHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIPVLPSEAEFPYAIRTVSETM 431

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY------P 173
           +++G T  A++  + ++L                   +K  VA ISCG++ G        
Sbjct: 432 ESNGSTSQASVCASTLSLMAAGV-------------PIKKQVAGISCGLVTGDTDDDYLV 478

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-K 232
           + D+   ED   D+D     T  G I  +Q   +    ++      +   K+    +I +
Sbjct: 479 LTDIQGLEDFFGDMDFKVAGTHDG-ITAIQMDIKIHGLTRAIIEEAIRRTKEAREYIINE 537

Query: 233 LQKDVISNE 241
           +    I+  
Sbjct: 538 VMTPAIAEP 546



 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 83/234 (35%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +S+    V+  A G+  + +GDT +L+TAT      E +  +  + ++       G +
Sbjct: 12  RTLSVDVGRVAAQANGAAFMHYGDTVVLSTATASDKPREGIDFFPLSVEYEEKLYAVGKV 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 72  P---GGFNKRE---GKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPDCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +++                     G  A    G++ G  + +    + +  D
Sbjct: 126 LTAMLGSAISVA-------------ISDIPFDGPCATTQVGLVDGELVFNPTAAQKAVSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    ++ ++  A      +D     +  A +   ++I+    +++ 
Sbjct: 173 LALTVASTRD-KVIMIEAGANEVP--EDKMLEAIFAAHEVNQEVIQFIDKIVAE 223


>gi|302795634|ref|XP_002979580.1| hypothetical protein SELMODRAFT_233365 [Selaginella moellendorffii]
 gi|300152828|gb|EFJ19469.1| hypothetical protein SELMODRAFT_233365 [Selaginella moellendorffii]
          Length = 291

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/268 (21%), Positives = 91/268 (33%), Gaps = 34/268 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR   + R  S++      A+GS LVK G+T +L  A LE   P        G ++
Sbjct: 27  VRPDGRPLTRSRPTSVSFNAVSSADGSALVKIGNTTMLAGAKLETMEPA-ADTPDQGCLS 85

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QI 112
            ++ M P  +          GR    +  I   +  AL    VVDL  L          I
Sbjct: 86  VDFVMPPICSP-----RVRPGRPAEEAYVITEQLQNALLSSGVVDLRELSIVSGKAAWMI 140

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHM--EDCSNKFQLSQV-------------- 156
            +D   + ADG    AA+  +  AL              K   +                
Sbjct: 141 YLDVYCLDADGSLLDAALLASVAALAHLQVPAICVRSEGKITKAPPDAQASSDGIEFTQP 200

Query: 157 ----LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFS 212
               L     A++  M     I D    E++ +D     ++  S  I+ +  +    T S
Sbjct: 201 RRLNLGEFPFALTVAMNQKSLIADPTAEEEAILDTKMIVILNSSQKIIALHKAGGSTTAS 260

Query: 213 QDHFFAMLNLAKDRIADLIKLQKDVISN 240
                  L LA  R   L K+ ++ +  
Sbjct: 261 TATIQDCLALAMRRRKTLQKVLEEALQK 288


>gi|307637887|gb|ADN80337.1| Poly ribonucleotide nucleotidyl transferase [Helicobacter pylori
           908]
 gi|325996485|gb|ADZ51890.1| Polyribonucleotide nucleotidyltransferase [Helicobacter pylori
           2018]
          Length = 688

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 87/249 (34%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------------LEEKVP 48
           +R   R   ++R IS+   +   A  S L   G T  L                LE K P
Sbjct: 313 IRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHENLEHKAP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGATSRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDHAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK    
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNVEG-ITAMQMDTKMSGIRLEVLYQALLQAKRARE 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 80/226 (35%), Gaps = 30/226 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S + + G T +L +  +E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLMYRLGKTLILASVCVERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
              L     +    +        +K  V+A     +    I++ +    +   +D     
Sbjct: 122 ---LQVSALNAASAALFLAHIAPIK-SVSACRIARVDNEFIINPNASLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEVQGSAER-ATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           T +S +++E++   ++     +      L LA+  + +   L ++ 
Sbjct: 178 TKESLNMIEMRSLGQKLNALEEPLMLEALELAQKSLKETCALYEEA 223


>gi|317178490|dbj|BAJ56278.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           F30]
          Length = 688

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 87/249 (34%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------------TLEEKVP 48
           +R   R   ++R I +   +   A  S L   G T  L               +LE K P
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGATSRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK    
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEVLYQALLQAKKARE 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 72/222 (32%), Gaps = 38/222 (17%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S + + G T +L +   E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLMYRLGKTIILASVCTERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
                         +  F         V+A     +    +++ +    +   +D     
Sbjct: 122 ----LQVSALNAASAALFLSHIAPIKSVSACRIARIDNEFVINPNASLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEV-----QGSAERATFSQDHFFAMLNLAKDRIAD 229
           T +S +++E+     Q +A             L LA+  + +
Sbjct: 178 TKESLNMIEMRSLGQQLNALEEPL----MLKALELAQKSLKE 215


>gi|210135372|ref|YP_002301811.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           P12]
 gi|257096695|sp|B6JN53|PNP_HELP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|210133340|gb|ACJ08331.1| polynucleotide phosphorylase [Helicobacter pylori P12]
          Length = 688

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 88/249 (35%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------------TLEEKVP 48
           +R   R   ++R I +   +   A  S L   G T  L               +LE K P
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKTP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGAASRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK+   
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIKLEILYQALLQAKEARE 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 77/218 (35%), Gaps = 30/218 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S + + G T +L +  +E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLMYRLGKTIILASVCVERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
              L     +    +        +K  V+A     +    I++ +    +   +D     
Sbjct: 122 ---LQVSALNAASAALFLAHIAPIK-SVSACRIARIDNEFIINPNTSLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEVQGSAER-ATFSQDHFFAMLNLAKDRIAD 229
           T +S +++E++   ++     +      L LA+  + +
Sbjct: 178 TKESLNMIEMRSLGQKLNALEEPLMLEALELAQKSLKE 215


>gi|262202098|ref|YP_003273306.1| polyribonucleotide nucleotidyltransferase [Gordonia bronchialis DSM
           43247]
 gi|262085445|gb|ACY21413.1| polyribonucleotide nucleotidyltransferase [Gordonia bronchialis DSM
           43247]
          Length = 759

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 88/246 (35%), Gaps = 16/246 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    V   A GS L + G+T +L   T  + V M  +    G  T
Sbjct: 360 FRIDGRGITDIRSLSAEVAVIPRAHGSALFERGETQIL-GVTTLDMVKMAQQIDSLGPET 418

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +      Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 419 SKRYMHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPSVEEFPYAIRQV 474

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            + + ++G T   ++  + ++L +    ++       +     G V+    G      + 
Sbjct: 475 SEALSSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAM-----GLVSDTVDGETRYVALT 529

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED+  D+D     T    +  +Q   +            L+ AKD    ++ +  
Sbjct: 530 DILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALSQAKDARLTILDVMA 588

Query: 236 DVISNE 241
           + I   
Sbjct: 589 EAIDEP 594



 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 74/239 (30%), Gaps = 19/239 (7%)

Query: 12  REISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM--LPR 68
           R I          A GS      D ++L + T   K P    +     +  E  M    R
Sbjct: 32  RTIRFETGRLALQAAGSVTAYLDDENMLLSTTAASKHPKEHFDFFPLTVDVEERMYAAGR 91

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR    +    R+I R LR           Q+++    +  +      
Sbjct: 92  IPGSFFRRE---GRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLNPNDLYDVV 148

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLK-----GHVAAISCGMLCGYPIVDLDYG--- 180
           AI  A  +               +++ +       G   A          + D+      
Sbjct: 149 AINAASASTQLAGLPFSGPVGGVRVALIPTEENKAGQWVAFPTVEQLEGAVFDMVVAGRI 208

Query: 181 ---EDSTIDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
              E    DV    V  ++   ++E+     +A  ++      L  AK  IA L + QK
Sbjct: 209 VSGEGDAADVAIMMVEAEATDKVLEIIAGGAQAP-TEAIVAEGLEAAKPFIARLCEAQK 266


>gi|290998465|ref|XP_002681801.1| predicted protein [Naegleria gruberi]
 gi|284095426|gb|EFC49057.1| predicted protein [Naegleria gruberi]
          Length = 289

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 75/252 (29%), Gaps = 37/252 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTKHGWI 59
           MR  GR     R+ SL   +     GS  VK  + T +L    +E            G +
Sbjct: 20  MRNDGRARLDYRDFSLETGIVSQTNGSARVKLANHTDVLVGVKVEIGEVDQ-DFPDQGRL 78

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS------VVDLSALGSRQ-- 111
                  P +      R A          EI   +   LR+       VD + L   +  
Sbjct: 79  EVHVECSPSANNEFEGRGAE---------EINAELISTLRNQLKNSFAVDWTKLCIVKGK 129

Query: 112 ----IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL---------- 157
               + +DC V+ + G    A       AL++      +                     
Sbjct: 130 QCWILYVDCIVLDSAGNLFDALAIATRAALYNTRIPKIEVMEISPTETEFEVSDDPHEYS 189

Query: 158 ----KGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
                    +++ G +    IVD    E+  I       +   GHI  ++ S + +  + 
Sbjct: 190 RIDCSNIPISVTLGKIGSKFIVDPSLEEEECISNRMTVSVNKKGHICSIKKSGKDSGVNP 249

Query: 214 DHFFAMLNLAKD 225
                ML  A+ 
Sbjct: 250 SELTKMLQTARK 261


>gi|195480861|ref|XP_002101422.1| GE15642 [Drosophila yakuba]
 gi|194188946|gb|EDX02530.1| GE15642 [Drosophila yakuba]
          Length = 415

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 85/258 (32%), Gaps = 32/258 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R  GR+ N+ R++ LT      A+ G+  V  GDT +LT  T +   P   R    G + 
Sbjct: 29  RFDGRRSNECRDVELTFG----ADWGTVAVSMGDTKVLTHVTCDMGAPATSR-PNEGKLQ 83

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSALGSRQ------I 112
               +   +  + V+          RS  +  ++ R  RS   VDL +L          I
Sbjct: 84  LNVNLGGVAFLDEVQTTH-----DQRSLTLNSLLERTFRSSRSVDLESLCVAAEQHVWCI 138

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH--------MEDCSNKFQLSQVLKGHVAAI 164
            +D +V+  DG    A+      AL    +         +   + K +    L      +
Sbjct: 139 RVDVNVLNHDGNLYDASTIATLAALMHFRRPDVTFTDDELRIYTEKEREFIPLLFLHYPV 198

Query: 165 SCGMLC----GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           S         G PIVD    E++  D            +  +       T  +       
Sbjct: 199 SVTYCIYKSSGQPIVDPTLLEENAADSVIVLSFNSYQELCSLNAGGTAPTNVRTIMQCAR 258

Query: 221 NLAKDRIADLIKLQKDVI 238
           N A      L+   +  +
Sbjct: 259 NAATR-CKSLVDFVRKAL 275


>gi|167745605|ref|ZP_02417732.1| hypothetical protein ANACAC_00297 [Anaerostipes caccae DSM 14662]
 gi|167654917|gb|EDR99046.1| hypothetical protein ANACAC_00297 [Anaerostipes caccae DSM 14662]
          Length = 713

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 78/230 (33%), Gaps = 29/230 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKH 56
           R  GR   ++R ++          GS L + G T ++T  TL      +++    ++   
Sbjct: 330 RPDGRDITEIRHLAAEVDCLPRVHGSALFQRGQTQVMTVTTLGSLSEAQRLDGMDQDETS 389

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         I    
Sbjct: 390 KRYMHHYNFPSYSVGETRPSRGPGRREIGHG----ALAERALIPVLPTEEEFPYAIRTVS 445

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++++++G T   +I  + ++L                   +K  VA IS G++ G     
Sbjct: 446 EIMESNGSTSQGSICASSLSLMAAGV-------------PVKAPVAGISVGLVTGDSDDD 492

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
              + D+   ED   D+D     TD G I  +Q   +    +       +
Sbjct: 493 YLILTDIQGLEDFFGDMDFKVAGTDKG-ITAIQMDIKIHGLTDQIIREAI 541



 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 80/226 (35%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+  A G+  + +GDT +L+TAT      + +  +  + ++       G +
Sbjct: 30  RTLTVEVGRVAAQANGAAFMHYGDTVVLSTATASDKPRDGIDFFPLSVEYEEKQYAVGKI 89

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KREA   R    +    R+I R +R +          +      +  D    
Sbjct: 90  P---GGFLKREA---RPSENAILTDRVIDRPMRPLFPKDYRNDVLLDNLVMSVDPDCSPE 143

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  A+   G++ G  I++    +    +
Sbjct: 144 LTAMLGSAIA-------------TCISDIPFDGPTASTMVGLIDGEFIINPTAAQKEVSE 190

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +D     +  A +   ++I 
Sbjct: 191 MSLTVASTRE-KVIMIEAGANEVP--EDIMIEAIFKAHEVNKEIIA 233


>gi|34851927|ref|XP_226471.2| PREDICTED: exosome component 6 [Rattus norvegicus]
 gi|109508906|ref|XP_001077520.1| PREDICTED: exosome component 6 [Rattus norvegicus]
          Length = 312

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 72/249 (28%), Gaps = 36/249 (14%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---------- 55
           R   ++R +     +   A+GS  ++ G T +L   +   +     R             
Sbjct: 71  RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPA 130

Query: 56  --HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
              G +  ++   P S     +R A  G    R  E+   +  AL   V L      Q+ 
Sbjct: 131 ALRGRLLCDFRRAPFSG---RRRRAPQGSSEDR--ELGLALQEALEPAVRLGRYPRAQLE 185

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-- 171
           +   +++ DGG+                               +   V      +  G  
Sbjct: 186 VSALLLE-DGGS------------ALAAALTAAALALADAGVEMYDLVVGCGLSLTPGPS 232

Query: 172 -YPIVDLDYGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
              ++D    E+   +       M     +  + GS E      + +   + L  +    
Sbjct: 233 PTWLLDPTRLEEEHSEAGLTVALMPVLNQVAGLLGSGEGGQ--TESWTDAVRLGLEGCQR 290

Query: 230 LIKLQKDVI 238
           L  + +  +
Sbjct: 291 LYPVLQQCL 299


>gi|317180940|dbj|BAJ58726.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           F32]
          Length = 688

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 87/249 (34%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------------TLEEKVP 48
           +R   R   ++R I +   +   A  S L   G T  L               +LE K P
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGATSRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK    
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEVLYQALLQAKKARE 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 72/222 (32%), Gaps = 38/222 (17%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S + + G T +L +  +E +      +     +  ++     + G   K    
Sbjct: 20  VAKQAISSLMYRLGKTIILASVCVERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
                         +  F         V+A     +    I++      +   +D     
Sbjct: 122 ----LQVSALNAASAALFLSHIAPIKSVSACRIARIDNEFIINPSTSLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEV-----QGSAERATFSQDHFFAMLNLAKDRIAD 229
           T +S +++E+     Q +A             L LA+  + +
Sbjct: 178 TKESLNMIEMRSLGQQLNALEEPL----MLKALELAQRSLKE 215


>gi|254779759|ref|YP_003057865.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           B38]
 gi|254001671|emb|CAX29876.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) [Helicobacter pylori B38]
          Length = 688

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 88/249 (35%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------------TLEEKVP 48
           +R   R   ++R I +   +   A  S L   G T  L               +LE K P
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKTP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGATSRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK+   
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIRLEVLYQALLQAKEARK 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 76/222 (34%), Gaps = 38/222 (17%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S + + G T +L +  +E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLMYRLGKTIILASVCIERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
              L     +    +        +K  V+A     +    I++ +    +   +D     
Sbjct: 122 ---LQVSALNAASAALFLAHIAPIK-SVSACRIARIDNEFIINPNTSLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEV-----QGSAERATFSQDHFFAMLNLAKDRIAD 229
           T +S +++E+     Q +A             L LA+  + +
Sbjct: 178 TKESLNMIEMRSLGQQLNALEEPL----MLKALELAQKSLKE 215


>gi|323692624|ref|ZP_08106856.1| polyribonucleotide nucleotidyltransferase [Clostridium symbiosum
           WAL-14673]
 gi|323503321|gb|EGB19151.1| polyribonucleotide nucleotidyltransferase [Clostridium symbiosum
           WAL-14673]
          Length = 707

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 88/252 (34%), Gaps = 30/252 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT-ATLEE--KVPMWIRNTKH 56
           R  GR   ++R ++    +     GS +   G T +L   T A L E  K+     N K 
Sbjct: 312 RPDGRGVTEIRRLAAEIDMLPRVHGSGMFTRGQTQILNICTLAPLSEAQKLDGLDENEKS 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         I    
Sbjct: 372 KRYMHHYNFPSYSVGETRPSRGPGRREIGHG----ALAERALIPVLPREEEFPYAIRTVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + ++++G T  A+I  + ++L                   +K  VA ISCG++ G     
Sbjct: 428 ETMESNGSTSQASICASTLSLMAAGV-------------PIKAPVAGISCGLVTGDTDDD 474

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML-NLAKDRIAD 229
              + D+   ED   D+D     T  G I  +Q   +    ++      +    + RI  
Sbjct: 475 YIVLTDIQGLEDFFGDMDFKVGGTHKG-ITAIQMDIKIHGLTRPIIEEAIAKTREARIHI 533

Query: 230 LIKLQKDVISNE 241
           L  + K VI+  
Sbjct: 534 LDDVMKPVIAEP 545



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 78/226 (34%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+  A G+  + +GDT +L+TAT      + +  +  + +        G +
Sbjct: 12  RTLTVDIGRVAAQANGAAFMHYGDTTVLSTATASDKPRDGIDFFPLSVEFEEKLYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 72  P---GGFNKRE---GKASENAVLTCRVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA +A                      G  A    G++ G  IV+    +    D
Sbjct: 126 YTAMLGAAIA-------------TCISDIPFDGPCATTQIGLIDGEFIVNPTNLQKKLSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +D     +  A D   ++IK
Sbjct: 173 LALTVASTRE-KVIMIEAGANEVP--EDIVLQAIFKAHDINQEIIK 215


>gi|317014601|gb|ADU82037.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           Gambia94/24]
          Length = 688

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 87/249 (34%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------------LEEKVP 48
           +R   R   ++R IS+   +   A  S L   G T  L                LE K P
Sbjct: 313 IRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHENLEHKAP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGATSRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDHAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK    
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNVEG-ITAMQMDTKMSGIRLEVLYQALLQAKRARK 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 77/226 (34%), Gaps = 30/226 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S + + G T +L +   E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLMYRLGKTLILASVCTERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
              L     +    +        +K  V A     +    I++      +   +D     
Sbjct: 122 ---LQVSALNAASAALFLAHIAPIK-SVGACRIARVDNEFIINPSASLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEVQGSAER-ATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           T +S +++E++   ++     +      L LA+  + +   L ++ 
Sbjct: 178 TKESLNMIEMRSLGQKLNALEEPLMLEALELAQKSLKETCALYEEA 223


>gi|315587104|gb|ADU41485.1| polyribonucleotide nucleotidyltransferase [Helicobacter pylori 35A]
          Length = 688

 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 87/253 (34%), Gaps = 43/253 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------------TLEEKVP 48
           +R   R   ++R I +   +   A  S L   G T  L               +LE K P
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGATSRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+                  +   VA ++ GM
Sbjct: 420 EQVIRLVSEILESNGSSSMASVCAGSLALY-------------ASGVEIYDLVAGVAMGM 466

Query: 169 LCGY----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           +        + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK
Sbjct: 467 VSEEQDHAILSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIKLEILYQALLQAK 525

Query: 225 DRIADLIKLQKDV 237
                ++K+  + 
Sbjct: 526 KAREHILKIMHEA 538



 Score = 58.6 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 73/218 (33%), Gaps = 30/218 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S + + G T +L +   E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLMYRLGKTIILASVCTERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
                         +  F         V+A     +    I++ +    +   +D     
Sbjct: 122 ----LQVSALNAASAALFLSHIAPIKSVSACRIARIDNEFIINPNTSLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEVQGSAER-ATFSQDHFFAMLNLAKDRIAD 229
           T +S +++E++   ++     +      L LA+  + +
Sbjct: 178 TKESLNMIEMRSLGQKLNALEEPLMLKALELAQKSLKE 215


>gi|145295879|ref|YP_001138700.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           glutamicum R]
 gi|187610291|sp|A4QEY2|PNP_CORGB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|140845799|dbj|BAF54798.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 753

 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 92/253 (36%), Gaps = 30/253 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
            R+ GR    +R++++   +   A GS L + G+T +L   TL+    E+    +     
Sbjct: 367 FRIDGRGVTDIRDLAVEVELIPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLAPGDA 426

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RA+  V+         I    
Sbjct: 427 KRYMHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERAVLPVIPSREEFPYSIRQVS 482

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + + ++G T   ++  + ++L++                 LK  VA I+ G++ G     
Sbjct: 483 EALGSNGSTSMGSVCASTLSLYNAGV-------------PLKAPVAGIAMGLVSGEIDGK 529

Query: 173 ----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T    I  +Q   +            L  A+D   
Sbjct: 530 TEYVALTDILGAEDAFGDMDFKVAGTADF-ITALQLDTKLDGIPSKVLSDALEQARDARL 588

Query: 229 DLIKLQKDVISNE 241
            ++    DVI+  
Sbjct: 589 TILNTMADVINGP 601



 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 12/152 (7%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      +++ A+G+      D T LL T T      E    +             G 
Sbjct: 29  RTIRFETGQLARQADGAVTTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERMYAAGR 88

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           QI++    +  +   
Sbjct: 89  IP---GSFFRRE---GRPSTEAILACRLIDRPLRPTFVKGLRNEVQIVVTVMSMNPEDYY 142

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVL 157
              AI GA  A       +       +++ V+
Sbjct: 143 DVVAINGASAATRISGLPVSGAVGGVRMALVV 174


>gi|296081851|emb|CBI20856.3| unnamed protein product [Vitis vinifera]
          Length = 243

 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 87/255 (34%), Gaps = 40/255 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R ++ +R +   A GS     GDT +L      +       N +   I  
Sbjct: 5   RDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKACIEV 64

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            +                +G+ G   +E + ++ R L+S+  L+   +    I   V+  
Sbjct: 65  VWK-------------PKTGQIGKPEKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSD 111

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DG     AI  A  AL D    ++  +            VA   C    GY I+D    E
Sbjct: 112 DGALLPCAINAACAALVDAAIPLKHLA------------VAICCCLTESGYVILDPTKVE 159

Query: 182 DSTIDVDANFVMTDS-------------GHIVE--VQGSAERATFSQDHFFAMLNLAKDR 226
           +  +   A  V  +S             G ++E  +  S      S D +   L   +  
Sbjct: 160 EQKMKAFAYLVFPNSAISIIPEGSSHMEGELMEHGIITSVTHGVMSVDDYLHCLERGQAA 219

Query: 227 IADLIKLQKDVISNE 241
              +    +  + ++
Sbjct: 220 STKMSAFLRRSLQSQ 234


>gi|225429944|ref|XP_002281273.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 245

 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 87/255 (34%), Gaps = 40/255 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R ++ +R +   A GS     GDT +L      +       N +   I  
Sbjct: 7   RDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKACIEV 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            +                +G+ G   +E + ++ R L+S+  L+   +    I   V+  
Sbjct: 67  VWK-------------PKTGQIGKPEKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSD 113

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DG     AI  A  AL D    ++  +            VA   C    GY I+D    E
Sbjct: 114 DGALLPCAINAACAALVDAAIPLKHLA------------VAICCCLTESGYVILDPTKVE 161

Query: 182 DSTIDVDANFVMTDS-------------GHIVE--VQGSAERATFSQDHFFAMLNLAKDR 226
           +  +   A  V  +S             G ++E  +  S      S D +   L   +  
Sbjct: 162 EQKMKAFAYLVFPNSAISIIPEGSSHMEGELMEHGIITSVTHGVMSVDDYLHCLERGQAA 221

Query: 227 IADLIKLQKDVISNE 241
              +    +  + ++
Sbjct: 222 STKMSAFLRRSLQSQ 236


>gi|227495155|ref|ZP_03925471.1| polynucleotide phosphorylase/polyadenylase [Actinomyces coleocanis
           DSM 15436]
 gi|226831607|gb|EEH63990.1| polynucleotide phosphorylase/polyadenylase [Actinomyces coleocanis
           DSM 15436]
          Length = 782

 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 91/254 (35%), Gaps = 32/254 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR+   +R +S    V     GS L + G+T +L   T    + M  +      +T
Sbjct: 339 VRIDGRKPTDIRSLSAEVEVLPRVHGSALFQRGETQIL-GVTTLNMLRMEQQLDNLSPVT 397

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           A     +Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 398 AKRYMHQYNFPPFSTGETGRVGSPKRREIGHG----ALAERALVPVIPAREDFPYAIRQV 453

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            + + ++G T   ++  + ++L                   L+  VA I+ G++ G    
Sbjct: 454 SEALGSNGSTSMGSVCASTLSLLQAGV-------------PLRAPVAGIAMGLMTGEVDG 500

Query: 174 ------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                 + D+   ED   D+D     T   +I  +Q   +      +     L  A+D  
Sbjct: 501 VQKAVTLTDILGIEDGFGDMDFKVAGTRE-YITALQLDTKLDGIDSEVLAGALAQARDAR 559

Query: 228 ADLIKLQKDVISNE 241
             ++ L    IS  
Sbjct: 560 FAILDLINQAISEP 573



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 77/245 (31%), Gaps = 38/245 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTATL----EEKVPMWIRNTKHGWITAEYGM 65
           R I      +++ A GS +    D T +L+  T+    +++   +             G 
Sbjct: 22  RVIRFETGRLARQAAGSAMAYLDDETAILSATTVGKHPKDQFDFFPLTVDVEERQYAAGK 81

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR G  +    R++ R LR           Q++     I  D   
Sbjct: 82  IP---GSFFRRE---GRPGTEAILACRLMDRPLRPAFVKGLRNEVQVVGTVLAIHPDDAY 135

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE---- 181
              AI  A ++                      G +      ++ G  +    Y E    
Sbjct: 136 DVLAINAASMSTQIAGL-------------PFSGPIGGTRLALIDGQWVAFPRYSEMERS 182

Query: 182 -------DSTIDVDANFVMTDS-GHIVEVQGSAERATFSQDHFFA-MLNLAKDRIADLIK 232
                     +  D   +M ++ G    V   A   T   +   A  L  AK  I  L +
Sbjct: 183 TFNIVVAGRVVGDDVAIMMVEAGGGDDMVDLMAAGGTVPTEEVVADGLEAAKPIIRQLCE 242

Query: 233 LQKDV 237
            Q +V
Sbjct: 243 AQLEV 247


>gi|317472798|ref|ZP_07932109.1| polyribonucleotide nucleotidyltransferase [Anaerostipes sp.
           3_2_56FAA]
 gi|316899717|gb|EFV21720.1| polyribonucleotide nucleotidyltransferase [Anaerostipes sp.
           3_2_56FAA]
          Length = 695

 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 78/230 (33%), Gaps = 29/230 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTKH 56
           R  GR   ++R ++          GS L + G T ++T  TL      +++    ++   
Sbjct: 312 RPDGRDITEIRHLAAEVDCLPRVHGSALFQRGQTQVMTVTTLGSLSEAQRLDGMDQDETS 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         I    
Sbjct: 372 KRYMHHYNFPSYSVGETRPSRGPGRREIGHG----ALAERALIPVLPTEEEFPYAIRTVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           ++++++G T   +I  + ++L                   +K  VA IS G++ G     
Sbjct: 428 EIMESNGSTSQGSICASSLSLMAAGV-------------PVKAPVAGISVGLVTGDSDDD 474

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
              + D+   ED   D+D     TD G I  +Q   +    +       +
Sbjct: 475 YLILTDIQGLEDFFGDMDFKVAGTDKG-ITAIQMDIKIHGLTDQIIREAI 523



 Score = 69.0 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 80/226 (35%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+  A G+  + +GDT +L+TAT      + +  +  + ++       G +
Sbjct: 12  RTLTVEVGRVAAQANGAAFMHYGDTVVLSTATASDKPRDGIDFFPLSVEYEEKQYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KREA   R    +    R+I R +R +          +      +  D    
Sbjct: 72  P---GGFLKREA---RPSENAILTDRVIDRPMRPLFPKDYRNDVLLDNLVMSVDPDCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  A+   G++ G  I++    +    +
Sbjct: 126 LTAMLGSAIA-------------TCISDIPFDGPTASTMVGLIDGEFIINPTAAQKEVSE 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +D     +  A +   ++I 
Sbjct: 173 MSLTVASTRE-KVIMIEAGANEVP--EDIMIEAIFKAHEVNKEIIA 215


>gi|124006215|ref|ZP_01691050.1| polyribonucleotide nucleotidyltransferase [Microscilla marina ATCC
           23134]
 gi|123988139|gb|EAY27797.1| polyribonucleotide nucleotidyltransferase [Microscilla marina ATCC
           23134]
          Length = 712

 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 89/248 (35%), Gaps = 36/248 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRN---TKHG 57
           R+ GR  +++R I           GS L   G+T  LTT TL  K+  ++I N       
Sbjct: 319 RIDGRDFSEIRPIWGEVNYLPATHGSALFTRGETQSLTTLTLGTKLDELFIDNATFKGTQ 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y     STG        S R+ G       +  RAL+ ++         I I  D
Sbjct: 379 KFMLHYNFPGFSTGEVKPNRGASRREIGHG----NLAYRALKGMLPKDEDNPYTIRIVSD 434

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
           +++++G +  A +    +AL D                 +K  V+ I+ G++        
Sbjct: 435 IMESNGSSSMATVCAGTMALMDGGIS-------------IKAPVSGIAMGLISDESDPEN 481

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR---- 226
              + D+   ED   D+D     T  G I   Q   +    S D     L  A++     
Sbjct: 482 YAVLSDILGDEDHLGDMDFKVTGTRDG-ITACQMDIKMEGLSYDILTKALAQAREGRLHI 540

Query: 227 ---IADLI 231
              I ++I
Sbjct: 541 LDKIEEII 548



 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 76/231 (32%), Gaps = 29/231 (12%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R+I+L      + A GS +V  G T LL T       ++ V     +       A  G +
Sbjct: 16  RKITLETGKLARQANGSVVVTMGQTMLLATVVSQKEAKDDVDFLPLSVDFQERFAAAGKV 75

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G  +KRE   GR         R++ RA+R +         QI I            
Sbjct: 76  P---GGFLKRE---GRLSNYEILTCRLVDRAMRPLFPGDYHADTQINIFL---------- 119

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              I+       D L  +   S          G  A +    + G  +++         D
Sbjct: 120 ---ISSDPEVPADALAALAASSAVSVSDIPFNGPTAEVRVARVNGEFVINPSVEAIEEAD 176

Query: 187 VDANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T DS  +VE     E    S+      +    + I  L + QK+
Sbjct: 177 LDIMLAATLDSVLMVE----GEMQEVSEQDMLDAIRFGHEVIKTLCQAQKE 223


>gi|330797129|ref|XP_003286615.1| hypothetical protein DICPUDRAFT_31155 [Dictyostelium purpureum]
 gi|325083440|gb|EGC36893.1| hypothetical protein DICPUDRAFT_31155 [Dictyostelium purpureum]
          Length = 276

 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 86/260 (33%), Gaps = 35/260 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM--------WIR 52
           +R  GR  N  R+ +++      A+GS  VK G+T ++     E              I 
Sbjct: 21  VRPDGRSLNDTRKTTISTGSVTTADGSSFVKIGNTSVVCGVRAEVGEKPSTDKSKLQSIN 80

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI-QR---MIGRALRSVVDLSALG 108
           N ++  I     + P  +         S +    +  +  R   +I R L  + D     
Sbjct: 81  NHENSNIFINIELGPICSNT-----FSSTKPSDMAMTLCSRLNSLINR-LE-IPDTDFYF 133

Query: 109 SRQ------IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK----FQLSQVL- 157
             +      + +D   +  DG    AA+     AL +         N       L Q L 
Sbjct: 134 DEEGKALWYLYVDIYCLDYDGNIYDAAVLSILSALKNVKLPKGIIENNDEYYKDLEQPLR 193

Query: 158 ----KGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
               K ++   S  ++  Y + D    E+       N    +   I  +  +    + S+
Sbjct: 194 ELNIKHYLIPTSFSVIEDYILSDPSLEEEKLSTGTINITYNEHKEICLLLVTG-INSISE 252

Query: 214 DHFFAMLNLAKDRIADLIKL 233
            +    +  AKDR   +I L
Sbjct: 253 SNLKECMKKAKDRCQYIINL 272


>gi|297562516|ref|YP_003681490.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846964|gb|ADH68984.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 770

 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 90/251 (35%), Gaps = 30/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R++S    V     GS L + G+T ++   T      +E+ V     + 
Sbjct: 337 IRIDGRGPKDIRQLSAEVGVLPRVHGSALFERGETQIM-GVTTLNMLRMEQTVDTLNPDK 395

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              ++   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 396 TKRYMH-NYNFPPYSTGETGRVGSPKRREIGHG----ALAERALLPVLPAREEFPYAIRQ 450

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             + + ++G T   ++  + ++L                   LK  V+ I+ G++     
Sbjct: 451 VSEALGSNGSTSMGSVCASTMSLMAAGV-------------PLKEMVSGIAMGLISEGDE 497

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED+  D+D     T    I  +Q   +      +     L  A+     +
Sbjct: 498 FVTLTDILGAEDAFGDMDFKVAGTREL-ITALQLDTKLDGIPAEQLALALQQARGARLAI 556

Query: 231 IKLQKDVISNE 241
           + + ++ I   
Sbjct: 557 LDVMQEAIERP 567



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 73/243 (30%), Gaps = 33/243 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM--LPR 68
           R I      +++ A GS  V   D  ++ +AT   K P    +     +  E  M    R
Sbjct: 19  RTIRFETGRLARQAAGSATVYLDDETVVLSATTASKRPKENLDFFPLTVDVEERMYAAGR 78

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR    +    R+I R LR           QI+     +  +      
Sbjct: 79  IPGSFFRRE---GRPSEDAILTCRLIDRPLRPSFRKGLRNEIQIVETVLALHPEHLYDVV 135

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           AI  A ++                      G +  +   ++ G  +    + E      D
Sbjct: 136 AINAASMSTQIAGL-------------PFSGPIGGVRVALIDGQWVGFPTHAELENATFD 182

Query: 189 ANFV----MTDSGHIVEVQGS---------AERATFSQDH-FFAMLNLAKDRIADLIKLQ 234
                         I+ V+           AE A    +      L  AK  I  L K Q
Sbjct: 183 MVVAGRVLADGDVAIMMVEAESTVRTLKLVAEGAVGPNEQTVAEGLEAAKPFIKVLCKAQ 242

Query: 235 KDV 237
           + V
Sbjct: 243 QAV 245


>gi|170067610|ref|XP_001868550.1| mRNA transport regulator 3 [Culex quinquefasciatus]
 gi|167863714|gb|EDS27097.1| mRNA transport regulator 3 [Culex quinquefasciatus]
          Length = 173

 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 54/123 (43%), Gaps = 5/123 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   RQ+ + R+  +   V   A+GS  ++ G+T ++ +     ++P      + G +  
Sbjct: 43  RKCNRQDTESRKYFMKLGVVSTAKGSAYLELGNTKVIVSVFDPREIPKQNTFRELGELYC 102

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           +    P +  +R   +  +     RS  +   + +AL+ VV      + QI I  +V++ 
Sbjct: 103 DLKFSPFACVHRKNPQTDA---EERS--LAAAMTKALQPVVCRHLFPNFQIDIFANVLED 157

Query: 122 DGG 124
           DG 
Sbjct: 158 DGS 160


>gi|153791339|ref|NP_001093283.1| mRNA transport regulator 3 [Bombyx mori]
 gi|95103116|gb|ABF51499.1| mRNA transport regulator 3 [Bombyx mori]
          Length = 268

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 50/169 (29%), Gaps = 17/169 (10%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
              +   A+GS  V+   T ++ +     ++P      + G +  E    P S   R +R
Sbjct: 20  RTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKFAPFSCP-RKRR 78

Query: 77  EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
             V        + +   + +AL   V        QI +   +++ DG             
Sbjct: 79  PYV---PDVEEKALSVALRQALEPAVCRHFFPDYQIDVLIYILEHDGS------------ 123

Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
                            +  +   + + S  ++     +D    E+   
Sbjct: 124 -CLAAAINAAGLALANAAVPMFDIITSCSVAVIGHQMFIDPPEIEEHIA 171


>gi|254425324|ref|ZP_05039042.1| 3' exoribonuclease family, domain 2 [Synechococcus sp. PCC 7335]
 gi|196192813|gb|EDX87777.1| 3' exoribonuclease family, domain 2 [Synechococcus sp. PCC 7335]
          Length = 716

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 88/233 (37%), Gaps = 26/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R+I L     +  A GS L+  GDT +L TA   +  E +        +       G +P
Sbjct: 13  RDIQLKAGLFAPQAGGSVLISSGDTAVLVTATRSSGREGIDFLPLLVDYEERLYAAGRIP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  ++RE   GR   R+    R+I R +R +         QI+     +  D     
Sbjct: 73  ---GGFLRRE---GRPPERATLTSRLIDRPMRPLFPQWIRDDIQIVATTLSMDEDVPPDV 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A TGA +A+                     G +A +  G++    I++  Y E    ++
Sbjct: 127 LAATGASIAVLLA-------------EIPFNGPMATVRVGLVGDDFIINPTYQEIENGEL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D     +  G ++ V+  A +    +      ++   + + DLI+ Q D++  
Sbjct: 174 DLIVAGSPDG-VIMVEAGANQ--LPEQDVIEAIDFGYEVVRDLIQAQLDLVEE 223



 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 21/230 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMWIR-----NT 54
           +R+ GR+ +++R+I+    V      G+ L + G T +L+  TL       +        
Sbjct: 322 VRVDGRKLDEIRKITCRTGVLPTRVHGTGLFRRGLTQVLSVTTLGTPGDAQMMDDLHPGE 381

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +  ++   Y   P S G      +   R+ G       +  RAL  V+         I +
Sbjct: 382 EKRYLH-HYNFPPYSVGETRPMRSPGRREVGHG----ALAERALIPVLPSQEDFPYVIRV 436

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             + + ++G T   ++ G+ ++L D    +    +   +  + +G              +
Sbjct: 437 VSECLSSNGSTSMGSVCGSTLSLMDAGVPIMQPVSGAAMGLIREGDEV---------RIL 487

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
            D+   ED   D+D     T+SG I  +Q   +      +     +N A+
Sbjct: 488 SDIQGIEDFLGDMDFKVAGTESG-ITALQLDMKITGLPMEVIGEAINQAR 536


>gi|323483661|ref|ZP_08089044.1| hypothetical protein HMPREF9474_00793 [Clostridium symbiosum
           WAL-14163]
 gi|323402997|gb|EGA95312.1| hypothetical protein HMPREF9474_00793 [Clostridium symbiosum
           WAL-14163]
          Length = 707

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 88/252 (34%), Gaps = 30/252 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT-ATLEE--KVPMWIRNTKH 56
           R  GR   ++R ++    +     GS +   G T +L   T A L E  K+     N K 
Sbjct: 312 RPDGRGVTEIRRLAAEIDMLPRVHGSGMFTRGQTQILNICTLAPLSEAQKLDGLDENEKS 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         I    
Sbjct: 372 KRYMHHYNFPSYSVGETRPSRGPGRREIGHG----ALAERALIPVLPSEEEFPYAIRTVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + ++++G T  A+I  + ++L                   +K  VA ISCG++ G     
Sbjct: 428 ETMESNGSTSQASICASTLSLMAAGV-------------PIKAPVAGISCGLVTGDTDDD 474

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML-NLAKDRIAD 229
              + D+   ED   D+D     T  G I  +Q   +    ++      +    + RI  
Sbjct: 475 YIVLTDIQGLEDFFGDMDFKVGGTHKG-ITAIQMDIKIHGLTRPIIEEAIAKTREARIHI 533

Query: 230 LIKLQKDVISNE 241
           L  + K VI+  
Sbjct: 534 LDDVMKPVIAEP 545



 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 78/226 (34%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+  A G+  + +GDT +L+TAT      + +  +  + +        G +
Sbjct: 12  RTLTVDIGRVAAQANGAAFMHYGDTTVLSTATASDKPRDGIDFFPLSVEFEEKLYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 72  P---GGFNKRE---GKASENAVLTCRVIDRPMRPLFPKDYRNDVTLNNLVLSVDPDCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA +A                      G  A    G++ G  IV+    +    D
Sbjct: 126 YTAMLGAAIA-------------TCISDIPFDGPCATTQIGLIDGEFIVNPTNLQKKLSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +D     +  A D   ++IK
Sbjct: 173 LALTVASTRE-KVIMIEAGANEVP--EDIVLQAIFKAHDINQEIIK 215


>gi|309790622|ref|ZP_07685176.1| Polyribonucleotide nucleotidyltransferase [Oscillochloris
           trichoides DG6]
 gi|308227350|gb|EFO81024.1| Polyribonucleotide nucleotidyltransferase [Oscillochloris
           trichoides DG6]
          Length = 763

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 80/233 (34%), Gaps = 27/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R ++L     ++ A+G+  V++GDT LL T        E +  +     +       G +
Sbjct: 25  RTLTLEAGRFAEQADGAVTVRYGDTVLLATVVAAKEPREGIDFFPLTVDYEERMYSAGKI 84

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   GN  KRE   GR    +    R+  R LR +         Q+II    I       
Sbjct: 85  P---GNFFKRE---GRPTTTAILTSRLTDRPLRPLFPKGYYNEVQVIITTFSIDMVNDPG 138

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI GA  AL                    KG V A+    L G    +    E     
Sbjct: 139 PMAIIGASAALA-------------ISDIPFKGPVGAVQMTHLDGKVAANPPMSELERSR 185

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +D     T    ++   G+ E    ++D     +         L +LQ++++ 
Sbjct: 186 LDLVVAGTKDAVLMVEAGAYE---LTEDEMLEAVMQGHAVCKQLCELQEELVR 235



 Score = 88.6 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 93/251 (37%), Gaps = 29/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL-TTATLEEKVPMWIRNTK---- 55
           +R+ GR   ++R IS+   V     G+ L   G T +L  T          + +      
Sbjct: 329 IRVDGRATTEIRPISVDVGVIPRVHGTGLFHRGQTQVLTVTTLGSPGEEQRLDDLGIETS 388

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I   Y   P STG   +  +   R  G       +  R+L +V+         + + 
Sbjct: 389 KRYIH-HYNFPPFSTGEAKRMGSPRRRDIGHG----ALAERSLYAVLPTLEEFPYTMRLV 443

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +V+ ++G +  A++ G+ ++L D                 +K  VA ++ G++      
Sbjct: 444 SEVLSSNGSSSMASVCGSSLSLMDAGV-------------PIKRPVAGVAMGLITDPDGR 490

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED+  D+D     T  G I  +Q   +    + D        A+D    +
Sbjct: 491 WTVLTDIQGLEDALGDMDFKVAGTSEG-ITGLQMDIKTTGITYDIMRQAFAQARDGRLFI 549

Query: 231 IKLQKDVISNE 241
           +     VI++ 
Sbjct: 550 LDKMNAVINSP 560


>gi|255075435|ref|XP_002501392.1| predicted protein [Micromonas sp. RCC299]
 gi|226516656|gb|ACO62650.1| predicted protein [Micromonas sp. RCC299]
          Length = 291

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/260 (22%), Positives = 92/260 (35%), Gaps = 33/260 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R +S         +G C V+ GDT +L   + + + P   R    G IT
Sbjct: 25  LRVDGRGPFDTRPVSYRFGPK---DGMCEVQLGDTRVLAVVSAKLEPPSGARG-NEGTIT 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQ--I 112
                 P ++ N        GR G ++QE+  ++ RA+R    VD+ +L    G R   +
Sbjct: 81  INVEFSPMASPN-----FEPGRPGEQAQELALVLERAIRETGAVDVESLCVLAGRRVWHV 135

Query: 113 IIDCDVIQADGGTRTAAITG------------AWVALHDCLQHMEDCSNKFQLSQVLKGH 160
             D  V+ A G    AA               A V+    L  +     +  +   L   
Sbjct: 136 RCDVHVLDACGNIAGAASLAADAALLSFRRPEATVSPDTQLITVHPADVREPVPLALHHL 195

Query: 161 VAAISCGML---CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
             AI+ G      G  I D    E+  I  +   V+     +  V+   E A        
Sbjct: 196 PVAITFGYFAEQDGLVIADPTVNEEMVIGSELVVVLNAHDELCAVRYGGEVAV-KPSEIS 254

Query: 218 AMLNLAKDRIADLIKLQKDV 237
             + +A     DL K  K  
Sbjct: 255 RCVRIASRISKDLTKDLKKA 274


>gi|15827380|ref|NP_301643.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium leprae
           TN]
 gi|221229857|ref|YP_002503273.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium leprae
           Br4923]
 gi|81537101|sp|Q9CCF8|PNP_MYCLE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|254782731|sp|B8ZQJ6|PNP_MYCLB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|13092930|emb|CAC31235.1| putative polyribonucleotide phosphorylase / guanosine
           pentaphosphate synthetase [Mycobacterium leprae]
 gi|219932964|emb|CAR70949.1| putative polyribonucleotide phosphorylase / guanosine
           pentaphosphate synthetase [Mycobacterium leprae Br4923]
          Length = 773

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 87/243 (35%), Gaps = 12/243 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    V   A GS L + G+T +L   T  + V M  +    G  T
Sbjct: 352 FRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQIL-GVTTLDMVKMAQQIDSLGPET 410

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +      Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 411 SKRYMHHYNFPPFSTGETGRVGSPKRREIGHG----ALAERALVPVLPSVEEFPYAIRQV 466

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            + + ++G T   ++  + +AL +    ++       +  ++   V            + 
Sbjct: 467 SEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMG-LVSDDVEFDGGTERRFVTLT 525

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED+  D+D     T    +  +Q   +            L  AKD    ++++  
Sbjct: 526 DILGAEDAFGDMDFKCAGTKDF-VTALQLDTKLDGIPSQVLAGALAQAKDARLTILEVMA 584

Query: 236 DVI 238
           + I
Sbjct: 585 EAI 587



 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 81/257 (31%), Gaps = 47/257 (18%)

Query: 12  REISLTRRVSK-YAEGSCLVKF-GDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I          A G+ +     D  LL+  T     +E+   +             G 
Sbjct: 25  RAIRFETGRLALQAAGAVVAYLDADNMLLSATTASKNPKEQFDFFPLTVDVEERMYAAGR 84

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q+++    +  +   
Sbjct: 85  IP---GSFFRRE---GRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTILSVDPN--- 135

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE---- 181
                      L+D L      ++         G +  +   ++ G  +      +    
Sbjct: 136 ----------DLYDVLAINAASASTQLGGLPFSGPIGGVRVALIDGTWVAFPTVEQLERA 185

Query: 182 -------------DSTIDVDANFVMTDS---GHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                        D     D   +M ++    +++E+     +A  ++      L +AK 
Sbjct: 186 VFDMVIAGRIVGTDDEGKPDVAIMMVEAEATENVIELVECGAQAP-TESIVAQGLEVAKP 244

Query: 226 RIADLIKLQKDVISNEV 242
            IA L   Q++ +++ V
Sbjct: 245 FIAALCTAQQE-LADVV 260


>gi|195567204|ref|XP_002107160.1| GD15722 [Drosophila simulans]
 gi|194204561|gb|EDX18137.1| GD15722 [Drosophila simulans]
          Length = 407

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 82/259 (31%), Gaps = 32/259 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           RL GR+ N+ R++ LT       + GS  V  GDT ++     E  +P  +     G + 
Sbjct: 29  RLDGRRSNESRDVELTFGT----DWGSVAVSMGDTKVMAQVICEMGLPS-LSRPNEGKLQ 83

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------I 112
               +   +  +             RS ++  ++ R  RS   +DL +L          I
Sbjct: 84  LNVLLGGVAFLDE-----AYSTHDQRSLKLNSLLERTFRSSKCIDLESLCVAAEKHVWCI 138

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH--------MEDCSNKFQLSQVLKGHVAAI 164
            ++ +VI  DG    A+      AL    +         +            L  H   +
Sbjct: 139 RVNVNVINHDGNLYDASSIATLAALMHFRRPDVSYKDGELRIFKQNGLEFTPLLFHHYPV 198

Query: 165 SCGML----CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           S         G PI+D    E++  D            +  +       T +        
Sbjct: 199 SVTYCVYKSSGQPILDPTLLEENAADSVIVLSFNSYQELCSLTAGGTAPTNAPIVMQCAR 258

Query: 221 NLAKDRIADLIKLQKDVIS 239
           N A      L+   +  ++
Sbjct: 259 NAAAR-CKSLLDFVRKALA 276


>gi|256396976|ref|YP_003118540.1| polynucleotide phosphorylase/polyadenylase [Catenulispora
           acidiphila DSM 44928]
 gi|256363202|gb|ACU76699.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Catenulispora acidiphila DSM
           44928]
          Length = 737

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 91/243 (37%), Gaps = 16/243 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
           +R+ GR    +R +S    V     GS L + G+T +L   TL     E+++      T+
Sbjct: 338 VRIDGRGVRDIRPLSAEVEVVPRVHGSALFERGETQILGITTLNMLRMEQQLDTLNPETR 397

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 398 KRYMH-NYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPTREEFPYAIRQV 452

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            + + ++G T   ++  + ++L +    ++       +     G V+A   G      + 
Sbjct: 453 SEALSSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAM-----GLVSAEIDGKTEYVALT 507

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED+  D+D     T    +  +Q   +          A L  AKD    ++ +  
Sbjct: 508 DILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQAKDARLHILDVMM 566

Query: 236 DVI 238
           + I
Sbjct: 567 EAI 569



 Score = 58.6 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 77/252 (30%), Gaps = 44/252 (17%)

Query: 12  REISLTRR-VSKYAEGSC---LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEY 63
           R +      +++ A GS    L +  +T +L     + + ++ +  +             
Sbjct: 20  RTVRFETGRLARQAAGSVVAYLDE--ETMVLSATTASKSPKDSLDFFPLTVDVEERMYAV 77

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           G +P   G+  +RE   GR    +    R+I R LR           Q++     +  D 
Sbjct: 78  GRIP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFAKGLRNEVQVVATIMALNPDH 131

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
                AI  A  +                      G +  +   ++    +    + E +
Sbjct: 132 LYDVVAINAASASTQLAGL-------------PFSGPIGGVRVALIQDRWVAFPTHTELA 178

Query: 184 TIDVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIAD 229
               D              I+ V+  A   T           +++     L  AK  I  
Sbjct: 179 DAVFDMVVAGRTLEDGDVAIMMVEAEATSQTVSLVAGGSTAPTEEVVADGLEAAKPFIKA 238

Query: 230 LIKLQKDVISNE 241
           L   Q++ ++++
Sbjct: 239 LCVAQQE-LASQ 249


>gi|188528001|ref|YP_001910688.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           Shi470]
 gi|257096697|sp|B2UUX6|PNP_HELPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|188144241|gb|ACD48658.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           Shi470]
          Length = 688

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 87/249 (34%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------------TLEEKVP 48
           +R   R   ++R I +   +   A  S L   G T  L               +LE K P
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGATSRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 DQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLIAGVAMGMVSEGQDHAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK    
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEVLYQALLQAKKARE 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 34/220 (15%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S + + G T +L +  +E +            +  ++     + G   K    
Sbjct: 20  VAKQATSSLMYRLGKTIILASVCVERE----PVGEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
             ++ GR+Q  EI   R+I R LR +         QI +   V+  D             
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITL--MVLSHD----------VEN 120

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT- 194
            L     +    +        +K  V+A     +    I++ +    +   +D     T 
Sbjct: 121 DLQVSALNAASAALFLSHIAPIK-SVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTK 179

Query: 195 DSGHIVEV-----QGSAERATFSQDHFFAMLNLAKDRIAD 229
           +S +++E+     Q +A             L LA+  + +
Sbjct: 180 ESLNMIEMRSLGQQLNALEEPL----MLKALELAQKSLKE 215


>gi|19553179|ref|NP_601181.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           glutamicum ATCC 13032]
 gi|62390815|ref|YP_226217.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           glutamicum ATCC 13032]
 gi|81760356|sp|Q8NP50|PNP_CORGL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|21324745|dbj|BAB99368.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Corynebacterium glutamicum ATCC 13032]
 gi|41326153|emb|CAF20316.1| PUTATIVE POLYRIBONUCLEOTIDE PHOSPHORYLASE / GUANOSINE
           PENTAPHOSPHATESYNTHETASE [Corynebacterium glutamicum
           ATCC 13032]
          Length = 753

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 92/253 (36%), Gaps = 30/253 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
            R+ GR    +R++++   +   A GS L + G+T +L   TL+    E+    +     
Sbjct: 367 FRIDGRGVTDIRDLAVEVELIPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLAPGDA 426

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RA+  V+         I    
Sbjct: 427 KRYMHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERAVLPVIPSREEFPYAIRQVS 482

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + + ++G T   ++  + ++L++                 LK  VA I+ G++ G     
Sbjct: 483 EALGSNGSTSMGSVCASTLSLYNAGV-------------PLKAPVAGIAMGLVSGEIDGK 529

Query: 173 ----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T    I  +Q   +            L  A+D   
Sbjct: 530 TEYVALTDILGAEDAFGDMDFKVAGTADF-ITALQLDTKLDGIPSKVLSDALEQARDARL 588

Query: 229 DLIKLQKDVISNE 241
            ++    DVI+  
Sbjct: 589 TILNTMADVINGP 601



 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 12/152 (7%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      +++ A+G+      D T LL T T      E    +             G 
Sbjct: 29  RTIRFETGQLARQADGAVTTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERMYAAGR 88

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           QI++    +  +   
Sbjct: 89  IP---GSFFRRE---GRPSTEAILACRLIDRPLRPTFVKGLRNEVQIVVTVMSMNPEDYY 142

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVL 157
              AI GA  A       +       +++ V+
Sbjct: 143 DVVAINGASAATRISGLPVSGAVGGVRMALVV 174


>gi|2342619|emb|CAB11392.1| guanosine pentaphosphate synthetase/ polyribonucleotide
           nucleotidyltransferase [Mycobacterium leprae]
          Length = 777

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 87/243 (35%), Gaps = 12/243 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    V   A GS L + G+T +L   T  + V M  +    G  T
Sbjct: 356 FRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQIL-GVTTLDMVKMAQQIDSLGPET 414

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +      Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 415 SKRYMHHYNFPPFSTGETGRVGSPKRREIGHG----ALAERALVPVLPSVEEFPYAIRQV 470

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            + + ++G T   ++  + +AL +    ++       +  ++   V            + 
Sbjct: 471 SEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMG-LVSDDVEFDGGTERRFVTLT 529

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED+  D+D     T    +  +Q   +            L  AKD    ++++  
Sbjct: 530 DILGAEDAFGDMDFKCAGTKDF-VTALQLDTKLDGIPSQVLAGALAQAKDARLTILEVMA 588

Query: 236 DVI 238
           + I
Sbjct: 589 EAI 591



 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 81/257 (31%), Gaps = 47/257 (18%)

Query: 12  REISLTRRVSK-YAEGSCLVKF-GDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I          A G+ +     D  LL+  T     +E+   +             G 
Sbjct: 29  RAIRFETGRLALQAAGAVVAYLDADNMLLSATTASKNPKEQFDFFPLTVDVEERMYAAGR 88

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q+++    +  +   
Sbjct: 89  IP---GSFFRRE---GRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTILSVDPN--- 139

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE---- 181
                      L+D L      ++         G +  +   ++ G  +      +    
Sbjct: 140 ----------DLYDVLAINAASASTQLGGLPFSGPIGGVRVALIDGTWVAFPTVEQLERA 189

Query: 182 -------------DSTIDVDANFVMTDS---GHIVEVQGSAERATFSQDHFFAMLNLAKD 225
                        D     D   +M ++    +++E+     +A  ++      L +AK 
Sbjct: 190 VFDMVIAGRIVGTDDEGKPDVAIMMVEAEATENVIELVECGAQAP-TESIVAQGLEVAKP 248

Query: 226 RIADLIKLQKDVISNEV 242
            IA L   Q++ +++ V
Sbjct: 249 FIAALCTAQQE-LADVV 264


>gi|258652431|ref|YP_003201587.1| polynucleotide phosphorylase/polyadenylase [Nakamurella
           multipartita DSM 44233]
 gi|258555656|gb|ACV78598.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Nakamurella multipartita DSM
           44233]
          Length = 750

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 82/242 (33%), Gaps = 9/242 (3%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R +           GS L + G+T +L   TL     E+    +     
Sbjct: 338 VRIDGRGLTDIRTLGAEVGYLPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLAPENR 397

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 398 KRYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPTREEFPYAIRQVS 453

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  + ++L +    ++       +  V     A      +    + D
Sbjct: 454 EALGSNGSTSMGSVCASTLSLLNAGVPLKAAVAGIAMGLVSDTVTAEDGTSSVQYVALTD 513

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    +  +Q   +      +     L  A+D    ++ +  +
Sbjct: 514 ILGAEDAFGDMDFKVAGTRQF-VTALQLDTKLDGIPSEVLRGALVQARDARFTILDVMHE 572

Query: 237 VI 238
            I
Sbjct: 573 AI 574



 Score = 59.0 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 56/179 (31%), Gaps = 29/179 (16%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  +RE   GR    +    R+I R LR           Q++I    +  D        
Sbjct: 83  GSFFRRE---GRPSEDAILTCRLIDRPLRPTFTNGLRNEVQVVITVMALNPD-------- 131

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
                 L+D L      ++         G VA +   ++ G  +    + E      D  
Sbjct: 132 -----DLYDVLAINAASASTQISGLPFSGPVAGVRVALIDGQWVAFPRHSELERAVFDMV 186

Query: 191 FV---MTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQKD 236
                  D   I+ V+  A  AT           +++     L  AK  +  L + Q +
Sbjct: 187 VAGRLAGDDVAIMMVEAEATTATVGLVAGGAVAPTEEVVAEGLEAAKPFLRVLCQAQNE 245


>gi|225021179|ref|ZP_03710371.1| hypothetical protein CORMATOL_01191 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946086|gb|EEG27295.1| hypothetical protein CORMATOL_01191 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 758

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 91/244 (37%), Gaps = 18/244 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
            R+ GR    +R++ +   +   A GS L + G+T ++   T      +E+++      T
Sbjct: 372 FRIDGRGVTDIRDLGVEVDLIPRAHGSSLFERGETQIM-GVTTLDMLKMEQQIDSLTPTT 430

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              +I   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 431 TKRYIH-HYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVIPSREEFPYAIRQ 485

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             + + ++G T   ++  + ++L++    ++       +     G V+ +  G      +
Sbjct: 486 VSEALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAM-----GLVSDVVNGKERYVAL 540

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED+  D+D     T    I  +Q   +            L  A+D    ++   
Sbjct: 541 TDILGAEDAFGDMDFKVAGTADF-ITALQLDTKLDGIPSKVLADALAQARDARLTILDTM 599

Query: 235 KDVI 238
            +VI
Sbjct: 600 AEVI 603



 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 76/247 (30%), Gaps = 32/247 (12%)

Query: 12  REISLTRR-VSKYAEGSC---LVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEY 63
           R I      +++ A GS    L +  DT LL+T T      E    +             
Sbjct: 35  RTIRFETGQLARQAGGSVTTYLDE--DTMLLSTVTASKQPREGFDFFPLTVDVEERMYAA 92

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           G +P   G+  +RE   GR    +    R+I R LR           Q+++    I    
Sbjct: 93  GRIP---GSFFRRE---GRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVVTVLSIDPKD 146

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-----LKGHVAAISCGMLCGYPIVDLD 178
                AI GA  A       +       +++ +      KG   A          I +L 
Sbjct: 147 MYDVVAINGASAATQLSGLPVSGPVGGVRMALIADKKHPKGQWVAFPTHAQHEEAIFELV 206

Query: 179 Y----GEDSTIDV---DANFVMTDSGHIVE--VQGSAERATFSQDH-FFAMLNLAKDRIA 228
                 E         D   +M ++G   E  +   +E      +      L  AK  I 
Sbjct: 207 VAGRIVEKKVGKKVFNDVAIMMVEAGA-TEGVIDKISEGKPAPTEEVVAEGLEAAKPVIE 265

Query: 229 DLIKLQK 235
            L   Q+
Sbjct: 266 LLCLAQR 272


>gi|158313041|ref|YP_001505549.1| polynucleotide phosphorylase/polyadenylase [Frankia sp. EAN1pec]
 gi|226702654|sp|A8L6G1|PNP_FRASN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|158108446|gb|ABW10643.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Frankia sp. EAN1pec]
          Length = 729

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 90/251 (35%), Gaps = 30/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR   ++RE+S          GS L + G+T +L   T      +E+ V     + 
Sbjct: 337 VRIDGRSTTEIRELSAEVDYIPRVHGSALFERGETQIL-GVTTLAMLRMEQTVDTLNPDR 395

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              ++   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 396 TKRYMH-NYNFPPYSTGETGRVGSPKRREIGHG----ALAERALLPVLPSREEFPYAIRQ 450

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             + + ++G T   ++  + ++L +                 LK  VA I+ G++     
Sbjct: 451 VSEALSSNGSTSMGSVCASTLSLLNAGV-------------PLKAPVAGIAMGLIREGDA 497

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED+  D+D     T    +  +Q   +            L  A+     +
Sbjct: 498 FVTLTDILGAEDAYGDMDFKVAGTQEF-VTALQLDTKLDGIPASVLAGALQQARAARLTI 556

Query: 231 IKLQKDVISNE 241
           +++  + I   
Sbjct: 557 LEVMAEAIGGP 567



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 77/245 (31%), Gaps = 39/245 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R +      +++ A G+ +   GDT +L+  T+    +E++  +             G +
Sbjct: 19  RTVRFETGRLARQAAGAVVAHLGDTMVLSATTVSRSPKEQLDFFPLTVDVEERMYAAGRI 78

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+  +RE   GR    +    R+I R LR           Q++     +  D    
Sbjct: 79  P---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFAKGLRNEIQVVATVLALDPDTLYD 132

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI  A  +                      G + A   G + G  I    + E     
Sbjct: 133 VVAINAASASTMLAGL-------------PFSGPIGATRVGYVDGDWIAFPTHSELERAT 179

Query: 187 VDANFVM-----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
            D               I+ V+  A   T           +++   A L  AK  I +L 
Sbjct: 180 FDMVVAGRVLEDGSDVAIMMVEAEATPGTVALVAGGAPAPTEEVVAAGLEAAKPAIRELC 239

Query: 232 KLQKD 236
           + Q +
Sbjct: 240 RAQSE 244


>gi|317011412|gb|ADU85159.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           SouthAfrica7]
          Length = 688

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 87/249 (34%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------------TLEEKVP 48
           +R   R   ++R I +   +   A  S L   G T  L               +LE K P
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGATSRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK    
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEILYQALLQAKRARE 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 58.2 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 71/222 (31%), Gaps = 38/222 (17%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S L + G T +L +  +E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLLYRLGKTIILASVCVERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRIIDRTLRPLFPKDYRYPTQITLMVLSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
                         +  F         V A     +    I++      +   +D     
Sbjct: 122 ----LQVSALNAASAALFLSHVAPFKSVNACRIARVDNAFIINPSASLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEV-----QGSAERATFSQDHFFAMLNLAKDRIAD 229
           T +S +++E+     Q +A             L LA+  + +
Sbjct: 178 TKESLNMIEMRSLGQQLNALEEPL----MLEALELAQKSLKE 215


>gi|305680822|ref|ZP_07403629.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Corynebacterium matruchotii ATCC
           14266]
 gi|305659027|gb|EFM48527.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Corynebacterium matruchotii ATCC
           14266]
          Length = 758

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 91/244 (37%), Gaps = 18/244 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
            R+ GR    +R++ +   +   A GS L + G+T ++   T      +E+++      T
Sbjct: 372 FRIDGRGVTDIRDLGVEVDLIPRAHGSSLFERGETQIM-GVTTLDMLKMEQQIDSLTPTT 430

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              +I   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 431 TKRYIH-HYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVIPSREEFPYAIRQ 485

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             + + ++G T   ++  + ++L++    ++       +     G V+ +  G      +
Sbjct: 486 VSEALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAM-----GLVSDVVNGKERYVAL 540

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED+  D+D     T    I  +Q   +            L  A+D    ++   
Sbjct: 541 TDILGAEDAFGDMDFKVAGTADF-ITALQLDTKLDGIPSKVLADALAQARDARLTILDTM 599

Query: 235 KDVI 238
            +VI
Sbjct: 600 AEVI 603



 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 76/247 (30%), Gaps = 32/247 (12%)

Query: 12  REISLTRR-VSKYAEGSC---LVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEY 63
           R I      +++ A GS    L +  DT LL+T T      E    +             
Sbjct: 35  RTIRFETGQLARQAGGSVTTYLDE--DTMLLSTVTASKQPREGFDFFPLTVDVEERMYAA 92

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           G +P   G+  +RE   GR    +    R+I R LR           Q+++    I    
Sbjct: 93  GRIP---GSFFRRE---GRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVVTVLSIDPKD 146

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-----LKGHVAAISCGMLCGYPIVDLD 178
                AI GA  A       +       +++ +      KG   A          I +L 
Sbjct: 147 MYDVVAINGASAATQLSGLPVSGPVGGVRMALIADKKHPKGQWVAFPTHAQHEEAIFELV 206

Query: 179 Y----GEDSTIDV---DANFVMTDSGHIVE--VQGSAERATFSQDH-FFAMLNLAKDRIA 228
                 E         D   +M ++G   E  +   +E      +      L  AK  I 
Sbjct: 207 VAGRIVEKKVGKKVFNDVAIMMVEAGA-TEGVIDKISEGKPAPTEEVVAEGLEAAKPVIE 265

Query: 229 DLIKLQK 235
            L   Q+
Sbjct: 266 LLCLAQR 272


>gi|83283987|gb|ABC01901.1| 3'-5'-exoribonuclease/RNA binding-like protein [Solanum tuberosum]
          Length = 303

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 89/270 (32%), Gaps = 36/270 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R+    R+ +L       AEGS L K G T +L    +E   P  +     G I 
Sbjct: 36  VRPDARKLGSARDTTLALGAVASAEGSALAKIGSTTMLAAIKMEIMTPT-VECPDEGSIA 94

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALG------SRQI 112
            E+ M P  +          GR    +  I + +   +    ++DL  L       +   
Sbjct: 95  IEFHMPPICSP-----LVRPGRPAEVASVISKQLSDTILSSGMIDLKELCLVGGKAAWMA 149

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHM-------------EDCSNKFQLSQV--- 156
            +D   + ADG    AA+     A       +             ED        Q    
Sbjct: 150 YLDIYCLDADGSLFDAALLSTVAAFSHLNIPVVSLNEDGRIVLVSEDNIQLKLEKQPVNT 209

Query: 157 ------LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERAT 210
                 L     +++C +   Y + D    E+S ++     V+  S  +V +        
Sbjct: 210 EKRKLKLNSPPFSLTCLLHKNYILADPTAEEESIMETAVTVVLDSSYQLVSLYKPGGPVH 269

Query: 211 FSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                    + LAK R+ +L  +  + IS+
Sbjct: 270 AHTSVIQDCVALAKRRVKELQSVLNEAISD 299


>gi|226323220|ref|ZP_03798738.1| hypothetical protein COPCOM_00992 [Coprococcus comes ATCC 27758]
 gi|225208410|gb|EEG90764.1| hypothetical protein COPCOM_00992 [Coprococcus comes ATCC 27758]
          Length = 695

 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 76/231 (32%), Gaps = 31/231 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT----ATLEE--KVPMWIRNTK 55
           R  GR   ++R ++    +     GS +   G T  + T    A L E  KV     +  
Sbjct: 312 RPDGRAIEEIRPLAAEIDLIPRVHGSAMFTRGQTQ-ICTITTLAPLSEAQKVDGLDESET 370

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G          R+ G       +  RAL  V+         I   
Sbjct: 371 SKRYMHHYNFPSYSVGETRPSRGPGRREIGHG----ALAERALVPVLPSEEEFPYAIRTV 426

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            +  +++G T  A++  + ++L                   +K  VA ISCG++ G    
Sbjct: 427 SETFESNGSTSQASVCASSMSLMAAGV-------------PIKSAVAGISCGLVTGATDD 473

Query: 173 ---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
               + D+   ED   D+D     T  G I  +Q   +    ++      +
Sbjct: 474 DYLVLTDIQGLEDFFGDMDFKVAGTHKG-ITAIQMDIKIHGLTRPIIEEAI 523



 Score = 78.2 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 81/234 (34%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    V+K A G+ L+ +GDT +L+TAT      E +  +  + ++       G +
Sbjct: 12  RTLRVDVGRVAKQANGAVLMHYGDTVVLSTATASDKPREGIDFFPLSVEYNEKLYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      ++ D    
Sbjct: 72  P---GGFNKRE---GKASENAVLTCRVIDRPMRPLFPKDYRNDVTLENLVLSVEQDCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  A+   G++ G  + +    +    D
Sbjct: 126 LTAMLGSAIATA-------------ISDIPFDGPTASTQVGLVDGELVFNPTAEQKEKSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    ++ ++  A      +      +  A +    +I     +++ 
Sbjct: 173 LALTVASTRE-KVIMIEAGANEVP--EAKMLEAIFAAHEVNQKVIAFIDQIVAE 223


>gi|217032224|ref|ZP_03437722.1| hypothetical protein HPB128_2g26 [Helicobacter pylori B128]
 gi|216946095|gb|EEC24706.1| hypothetical protein HPB128_2g26 [Helicobacter pylori B128]
          Length = 382

 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 88/249 (35%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------------TLEEKVP 48
           +R   R   ++R I +   +   A  S L   G T  L               +LE K P
Sbjct: 7   IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 66

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 67  IKER------FMFHYNFPPFCVGEASSIGATSRRELGHG----NLAKRALETSIKNK--- 113

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 114 EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI---- 169

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK+   
Sbjct: 170 -----LSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIRLEVLYQALLQAKEARK 223

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 224 HILKIMHEA 232


>gi|269926894|ref|YP_003323517.1| Polyribonucleotide nucleotidyltransferase [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269790554|gb|ACZ42695.1| Polyribonucleotide nucleotidyltransferase [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 733

 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 91/247 (36%), Gaps = 27/247 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKH 56
           +R  GR   ++R +S    +     GS L   G T +++  TL  +    I +     + 
Sbjct: 314 VRPDGRGPKEIRPVSAEVGLLPRTHGSALFTRGQTQIISVVTLGTRREEQILDDLGMEES 373

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG        S R  G       ++ R+L  V+         + +  
Sbjct: 374 KRFMHHYNFPPYSTGEIRPLRGPSRRDIGHG----ALVERSLLPVMPSEEEFPYTVRVVS 429

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171
           +V+ ++G +   ++ G+ +AL D                 +K  V+ ++ G++ G     
Sbjct: 430 EVVSSNGSSSMGSVCGSTLALMDAGV-------------PIKAPVSGVAMGLVTGPDGKY 476

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             + D+   ED+  D+D     T+ G +  +Q   +    + D        A++    ++
Sbjct: 477 VILTDIQGIEDALGDMDFKVAGTEKG-VTGLQMDIKTTGITFDIMREAFEQAREGRMYIL 535

Query: 232 KLQKDVI 238
               + I
Sbjct: 536 GKMLEAI 542



 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 84/233 (36%), Gaps = 28/233 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R++S+    ++  A G+ LV++GDT +LTTA +    P    N     +T +Y     + 
Sbjct: 12  RKLSIETGRIAGQAHGAVLVQYGDTVVLTTA-VRADAP---SNMDFFPLTVQYEERMYAA 67

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           G      ++RE   GR    +    R+  R LR +         QII             
Sbjct: 68  GKIPGGFIRRE---GRPSENATLAARLTDRPLRPLFPKGYKYEVQIITTVLSTDQQNEPD 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             +I G   AL                     G V A   G + G  I++    +     
Sbjct: 125 LLSIIGGSAALS-------------ISDIPFLGPVGAARVGYIDGEYILNPTADQREESL 171

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +D     T    ++ V+GSA      +      +      + D IKLQ+ +++
Sbjct: 172 LDLTVAGTKDA-VIMVEGSAHE--LPESVMLGAVEFGHRMLQDTIKLQEQLVA 221


>gi|147779414|emb|CAN74356.1| hypothetical protein VITISV_000912 [Vitis vinifera]
          Length = 476

 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 96/268 (35%), Gaps = 36/268 (13%)

Query: 1   MRLSGRQENQMREISLTRR--VSKYA----EGSCLVKFGDTHLLTTATLEEKVPMWIRNT 54
           +R+ GR+    R IS+     V        +GS  V+ G TH++   T +  +  +    
Sbjct: 27  LRIDGRRPFDFRRISIKFGRQVFIRTICAEDGSSEVQLGQTHVMGFVTGQL-IQPYRDRP 85

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALG---- 108
             G ++      P +  +       +GR G  + E+ R+I R LR    VD+ +L     
Sbjct: 86  NEGTLSIYTEFSPMADPS-----FEAGRPGEAAVELGRVIDRGLRESRAVDMESLCVLAG 140

Query: 109 --SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN-------------KFQL 153
                I ID  +I   G    AA   A  AL    +                    +  L
Sbjct: 141 KLVWSIRIDLHIIDNGGNLIDAANIAALAALLTFRRPECSFGGEDGQELIVHPPEVREPL 200

Query: 154 SQVLKGHVAAISCGMLCGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
             ++     A++  ++      ++D  + E++ +       +  +G +  +Q +      
Sbjct: 201 PLIVHHLPIAVTFAIIGNENIMVIDPTHSEEAVMGGRMTATLNTNGDVCAIQKAGGEGII 260

Query: 212 SQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            Q      L +A  + AD+    K+ + 
Sbjct: 261 -QSVIMQCLRIASVKAADITSKIKNAVE 287


>gi|72061093|ref|XP_783510.1| PREDICTED: similar to Exosome component 8 [Strongylocentrotus
           purpuratus]
 gi|115946756|ref|XP_001196912.1| PREDICTED: similar to Exosome component 8 [Strongylocentrotus
           purpuratus]
          Length = 275

 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 87/256 (33%), Gaps = 25/256 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+  ++R   L       A GS LVK G+T ++     E   P  +   K G++ 
Sbjct: 22  VRPDGRELGEIRSTILNVGSISTAHGSALVKLGNTTVVCGIKGEFASPT-VEEPKKGYLV 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS------ALGSRQIII 114
               + P  +          G    ++Q   +++   L S   L+        G+   ++
Sbjct: 81  PNVDLPPLCSAQ-----FKPGPPSIQAQVTSQLVADTLLSSNLLNYEDLCIKEGNMVWVL 135

Query: 115 DCDV--IQADGGTRTAAITGAW---------VALHDCLQHMEDCSNKFQLSQVLKGHVAA 163
            CD+  +  DG    A +             V   D    + + S+    S  +    AA
Sbjct: 136 YCDMMCLDYDGNIIDACLIALLAALRNVRLPVVTIDEDTGLAELSSTEDRSLNIVNQFAA 195

Query: 164 ISCGMLCGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
            +  +     ++ D    E+         ++T  G +  +         S D     +  
Sbjct: 196 TTFSVFDDSILLVDPTVEEEDLATGLMTVIVTQDGRLCNIHKPG-GTPLSTDQIQDCIGR 254

Query: 223 AKDRIADLIKLQKDVI 238
           A+ R  ++  L  D +
Sbjct: 255 AQTRAKEICSLIDDTL 270


>gi|315640904|ref|ZP_07896000.1| ribonuclease PH/Ham1 protein [Enterococcus italicus DSM 15952]
 gi|315483322|gb|EFU73822.1| ribonuclease PH/Ham1 protein [Enterococcus italicus DSM 15952]
          Length = 432

 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 93/235 (39%), Gaps = 23/235 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR E   R+  +     KYA GS  +  GDT +             + +++ G+  
Sbjct: 1   MRYDGRYEKSKRQTKIETNNRKYALGSATIHQGDTIVSCAVN--------LSDSQDGY-- 50

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +  ++         +E    +   +S E+   + + L  V+  + LG +++ I+  V Q
Sbjct: 51  -QLKLVQLIAPMANNQELTKKQ---KSSEL--FLEQLLNGVLSDTNLGGKKLHIEVVVEQ 104

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
            DG     A    ++AL      +   +N+      +    AAI    +    P++D D 
Sbjct: 105 DDGSFLAVAANAMYLALQQACDTLTRRNNQSNSG--ISQGFAAIQVAFITPEIPLIDPDR 162

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML----NLAKDRIADL 230
            E+    V+A   + ++G  + VQ       F  +    +L     +A++ I +L
Sbjct: 163 HEELQALVEATVCVNEAGEFLAVQFDNNGRPFGINELNGVLISGTAVAQEEIQEL 217


>gi|212721556|ref|NP_001131768.1| hypothetical protein LOC100193137 [Zea mays]
 gi|194692484|gb|ACF80326.1| unknown [Zea mays]
 gi|195623954|gb|ACG33807.1| exosome complex exonuclease RRP43 [Zea mays]
          Length = 306

 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 90/261 (34%), Gaps = 35/261 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+  R+  + R  ++       A GS L + GDT +L +  LE   P    +   G + 
Sbjct: 39  VRIDARRLREARPTTVALGAVSSAHGSALARLGDTAMLASVKLEVMSPP-AEHPDEGSVA 97

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------I 112
            E+ M P  +          GR    +  I + +   L S  +++L  L           
Sbjct: 98  VEFHMPPICSP-----LVRPGRPTDVAPVISKALEDVLTSSGMLNLKDLCLITGKASWLA 152

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS--------------------NKFQ 152
            +D   + ADG    AA+  A  A       +                        N+ +
Sbjct: 153 YLDIYCLNADGSLFDAALISAVAAFTHLEIPLVSVGDDGRLFTVGGNDGKNKFELVNREK 212

Query: 153 LSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFS 212
               L     +++C +     + D    E+S I+     V+  S  +V +Q     A   
Sbjct: 213 RKLTLGAIPLSLTCALHKDEILADPTSEEESIIETYVTVVVDSSDRLVSLQKLG-GAVTC 271

Query: 213 QDHFFAMLNLAKDRIADLIKL 233
                  ++LAK+R   L ++
Sbjct: 272 MATIKECISLAKERRRSLREI 292


>gi|297571213|ref|YP_003696987.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Arcanobacterium haemolyticum DSM
           20595]
 gi|296931560|gb|ADH92368.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Arcanobacterium haemolyticum DSM
           20595]
          Length = 809

 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 88/249 (35%), Gaps = 24/249 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   ++R I+    +     GS L + G+T ++   T    + M  +      +TA
Sbjct: 355 RMDGRTPVEIRTITAESDILPRVHGSALFQRGETQIM-GVTTLNMLKMEQQLDNLSPVTA 413

Query: 62  -----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 414 KRYIHHYNFPPYSTGETGRVGSPKRREIGHGM----LAERALVPVLPSREEFPYAIRQVS 469

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + + ++G T   ++  + ++L +    ++       +  V          G + G     
Sbjct: 470 EALGSNGSTSMGSVCASTISLMNAGVPLKAVVAGIAMGLV---------SGEIDGEQRYV 520

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T    +  +Q   +      +   A L  A D    ++ 
Sbjct: 521 ALTDILGAEDALGDMDFKVAGTRDF-VTALQLDTKLDGIPAEVLAAALGQAHDARQAILD 579

Query: 233 LQKDVISNE 241
           L ++ +   
Sbjct: 580 LIEEAVPEP 588



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 67/224 (29%), Gaps = 32/224 (14%)

Query: 12  REISLTRRVS-KYAEGSCLVKF-GDTHLL-TTAT---LEEKVPMWIRNTKHGWITAEYGM 65
           R I     +  + A G  L    G+T +L  TA     +E    +         +   G 
Sbjct: 37  RTIRFETGLLARQAAGCALAYLDGETTVLSATAVSSQPKEHFDFFPLTVDVEERSYAAGR 96

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR G  +    R+I R LR           Q++     I  D   
Sbjct: 97  IP---GSFFRRE---GRPGTDAILAARLIDRPLRPAFVKGLRNEVQVVATVLTIHPDDAY 150

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A ++                      G +  +   ++ G  +    + E    
Sbjct: 151 DVVAINAASMSTQLSGL-------------PFSGPIGGVRISLIDGQWVAFPRWSEMPRA 197

Query: 186 DVDANFVMTDSGHIVEVQG-SAERATFSQDHFFAMLNLAKDRIA 228
                      G  V +    AE          A+ N+AK  + 
Sbjct: 198 TFTMVVAGRIVGDDVAIMMVEAEGGE------NAVENIAKGGVK 235


>gi|224131852|ref|XP_002321194.1| predicted protein [Populus trichocarpa]
 gi|222861967|gb|EEE99509.1| predicted protein [Populus trichocarpa]
          Length = 287

 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 86/258 (33%), Gaps = 34/258 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +  R IS+   V   A GS  ++ G T ++ +   E   P  ++    G + 
Sbjct: 20  LRSDGRKRDAYRPISIETGVIPQANGSARIRIGATEVIASVKAELGRPNALQ-PDKGKVA 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL-------RSVVDLSAL--GSRQ 111
                 P +      R          S E+   + R L        + +DLS+L     +
Sbjct: 79  IFVDCSPVAEPMFEGRGGE-----ELSAELSVALQRCLLGGKSGAGAGIDLSSLIVAEGK 133

Query: 112 I----IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA---- 163
           I     ID  VI +DG    A       AL +        +      +  +  ++     
Sbjct: 134 ICWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPRVQVAAGASGDEQPEVDISDEEFM 193

Query: 164 ----------ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
                     ++   +  + IVD    E+S +    +  ++  G I  +           
Sbjct: 194 QFDTSGVPVIVTLTKVGRHYIVDATSEEESQMSSAVSVSISRKGQICGLSKRGSAG-LDP 252

Query: 214 DHFFAMLNLAKDRIADLI 231
                M+++A+     LI
Sbjct: 253 SVISDMISVARHISEQLI 270


>gi|15612201|ref|NP_223854.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           J99]
 gi|81555135|sp|Q9ZK11|PNP_HELPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|4155738|gb|AAD06718.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE [Helicobacter pylori J99]
          Length = 688

 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 86/249 (34%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------------LEEKVP 48
           +R   R   ++R IS+   +   A  S L   G T  L                LE K P
Sbjct: 313 IRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGMDNDAQTHENLEHKAP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGATSRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +    AI    
Sbjct: 420 EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSERQDHAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK    
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEVLYQALLQAKRARK 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 82/226 (36%), Gaps = 30/226 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S + + G T +L +  +E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLMYRLGKTLILASVCVERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +   V+  D     + +A+  A
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITL--MVLNHDIENDLQVSALNAA 130

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
              L                   +K  V+A     +    I++      +   +D     
Sbjct: 131 SATLFLAHIA------------PIK-SVSACRIARVDNEFIINPSASLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEVQGSAER-ATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           T +S +++E++   ++     +      L LA+  + +   L ++ 
Sbjct: 178 TKESLNMIEMRSLGQKLNALEEPLMLEALELAQKSLKETCALYEEA 223


>gi|308063994|gb|ADO05881.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           Sat464]
          Length = 688

 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 87/249 (34%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------------TLEEKVP 48
           +R   R   ++R I +   +   A  S L   G T  L               +LE K P
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGATSRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 DQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK    
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEVLYQALLQAKKARE 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 77/218 (35%), Gaps = 30/218 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S + + G T +L +  +E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLMYRLGKTIILASVCVERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
              L     +    +        LK  V+A     +    I++ +    +   +D     
Sbjct: 122 ---LQVSALNAASAALFLSHIAPLK-SVSACRIARIGNEFIINPNTSLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEVQGSAER-ATFSQDHFFAMLNLAKDRIAD 229
           T +S +++E++   ++     +      L LA+  + +
Sbjct: 178 TKESLNMIEMRSLGQKLNALEEPLMLKALELAQKSLKE 215


>gi|221057472|ref|XP_002261244.1| exosome complex exonuclease [Plasmodium knowlesi strain H]
 gi|194247249|emb|CAQ40649.1| exosome complex exonuclease, putative [Plasmodium knowlesi strain
           H]
          Length = 514

 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 92/261 (35%), Gaps = 31/261 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR     R IS+         G+  V  G T ++   T  E V  + +    G I 
Sbjct: 19  LRLDGRNFEDSRNISI---YFFGEYGNVEVSIGHTKVICKIT-SEIVKPFDKRPNEGIIK 74

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA-----LGSRQII-- 113
               +   +  N       + +      EI+ +I R L+S   L+      +  +++   
Sbjct: 75  VNLDIDSFTNVN------DNSQISDECLEIKNLIERILKSSNLLNFESLCIIPHKKVWCL 128

Query: 114 -IDCDVIQADGGTRTAAITGAWVALHD------------CLQHMEDCSNKFQLSQVLKGH 160
            ++  V++ DG    +    A+  L               +   +  +N   LS      
Sbjct: 129 LVNIIVVENDGNLYDSCFLSAYSGLVHYRNNEVTVDSIGNIFIEQGETNYTPLSIHNTPI 188

Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +   +        ++D    E+  +    +  +  +G +V +      +  S +     +
Sbjct: 189 LTTFAYFNCEDICLIDPSIQEEEFMSSKLSVALNKNGKLVSILKPG-GSPISYEKILEAI 247

Query: 221 NLAKDRIADLIKLQKDVISNE 241
            LAK R+  ++K+ +D +  +
Sbjct: 248 ELAKKRVKSILKILEDALEED 268


>gi|293115582|ref|ZP_05792154.2| polyribonucleotide nucleotidyltransferase [Butyrivibrio crossotus
           DSM 2876]
 gi|292808925|gb|EFF68130.1| polyribonucleotide nucleotidyltransferase [Butyrivibrio crossotus
           DSM 2876]
          Length = 705

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 78/240 (32%), Gaps = 35/240 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------TLEEKVPMWIRNTK 55
           R  GR+  Q+R ++    +     GS +   G T  +         +  +K+        
Sbjct: 319 RPDGREITQIRPLAAEVDIIPRVHGSAMFTRGQTQ-ICNVCTLAPLSDAQKIDGLNDQET 377

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G       VS   G R      +  RAL  V+         I   
Sbjct: 378 SKRYMHHYNFPAYSVGETK----VSRGPGRREIGHGALAERALIPVLPSVEEFPYAIRTV 433

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            +  +++G T  A+   + ++L                   +K  VA ISCG++ G    
Sbjct: 434 SETFESNGSTSMASTCASCMSLMAAGV-------------PIKKMVAGISCGLVTGETDD 480

Query: 173 ---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED   D+D     T  G I  +Q   +    ++     ++  A  R  +
Sbjct: 481 DFVLLTDIQGLEDFFGDMDFKVTGTKDG-ITAIQMDIKIHGLTR----QIVEGAIARCRE 535



 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 82/234 (35%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+K A G+  + +GDT +L+TAT      + V  +  + ++       G +
Sbjct: 19  RTLTVDVDRVAKQANGAAFMHYGDTVVLSTATASEKPRDGVDFFPLSVEYEEKLYAVGKI 78

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          I      +  D    
Sbjct: 79  P---GGFNKRE---GKASENAILTSRVIDRPMRPLFPKDYRNDVTINNLVMSVDPDCSPE 132

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +++                     G  A    GM+ G  +++    + +  D
Sbjct: 133 LTAMLGSAISVA-------------ISDIPFDGPCATTQVGMIDGEFVINPSGSQMAVSD 179

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    ++ ++  A      +      +  A +    +I     +++ 
Sbjct: 180 LKLTVASTRE-KVIMIEAGANEIP--EARMIEAIYKAHEVNQQIIAFIDKIVAE 230


>gi|331234110|ref|XP_003329715.1| exosome complex exonuclease rrp45 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309308705|gb|EFP85296.1| exosome complex exonuclease rrp45 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 284

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 86/261 (32%), Gaps = 33/261 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYA-EG-SCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           R+  R   + R +S       +A +G S     G+T +    +     P W      G  
Sbjct: 24  RIDQRALLEQRPVS-----LSFAEDGHSVDCSLGNTRVAAHVSASITKP-WADRPFEGLF 77

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL-RS-VVDLSALGS------RQ 111
                + P +          +GR      +I RM+ ++L RS V+D  AL          
Sbjct: 78  QISSEINPMA-----NFIYDTGRSSENEIQISRMLDKSLSRSGVIDKEALCILAGQMVWS 132

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQH----MEDCSNKFQLSQVLKGHVAAISCG 167
           I +D   +  +G     A   A  AL    +     + +     ++   L  H   IS  
Sbjct: 133 IRLDLHFLNDEGNLLDCASIAAIAALQTFQRPDVTLVGEEITIERVPVPLTLHHTPISLT 192

Query: 168 M-------LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                        ++D +Y E+          +     I  V  S      S +    ++
Sbjct: 193 YGFFELDSHKSSVVLDPNYLEEQLSTGTITLALNPQKEICVVNKSG-GVPLSIEEIMNVV 251

Query: 221 NLAKDRIADLIKLQKDVISNE 241
            L   ++  L +L K +ISN 
Sbjct: 252 KLGSQKVKQLDQLIKSLISNR 272


>gi|225708764|gb|ACO10228.1| Exosome complex exonuclease MTR3 [Caligus rogercresseyi]
          Length = 278

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 10/126 (7%)

Query: 2   RLSGRQENQM--REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGW 58
           RL G +E  +  R +     +   ++GS  ++ G T +L +     +V   +  ++  G 
Sbjct: 37  RLDGEREKDISVRPLFCEVGILTQSKGSAYLERGRTKVLASVFGPREVSKKLDFSSTAGS 96

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           +  EY   P ++ +  + EA     G         + + LRS V L      +I +   V
Sbjct: 97  LNVEYKEAPFASRSDGRGEAKERDVG-------LFLAQTLRSTVCLHLYPKSRIDVCITV 149

Query: 119 IQADGG 124
           ++ DG 
Sbjct: 150 LEDDGS 155


>gi|296171645|ref|ZP_06852859.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894006|gb|EFG73769.1| polyribonucleotide nucleotidyltransferase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 751

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 87/243 (35%), Gaps = 12/243 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    V   A GS L + G+T +L   T  + V M  +    G  T
Sbjct: 342 FRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQIL-GVTTLDMVKMAQQIDSLGPET 400

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +      Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 401 SKRYMHHYNFPPFSTGETGRVGSPKRREIGHG----ALAERALLPVLPGVEEFPYAIRQV 456

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            + + ++G T   ++  + +AL +    ++       +  ++   V            + 
Sbjct: 457 SEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMG-LVSDDVEVDGKTERRFVTLT 515

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED+  D+D     T    +  +Q   +            L  AKD    ++++  
Sbjct: 516 DILGAEDAFGDMDFKCAGTKDF-VTALQLDTKLDGIPSQVLAGALAQAKDARLTILEVMA 574

Query: 236 DVI 238
           + I
Sbjct: 575 EAI 577



 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 43/158 (27%), Gaps = 22/158 (13%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  +RE   GR    +    R+I R LR           Q+++    +  +        
Sbjct: 87  GSFFRRE---GRPSTDAILTCRLIDRPLRPSFVSGLRNEIQVVVTILSLDPN-------- 135

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
                 L+D L      ++         G +  +   ++ G  +      +      D  
Sbjct: 136 -----DLYDVLAINAASASTQISGLPFSGPIGGVRVALIDGTWVAFPTVEQLERAVFDMV 190

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                    V +      AT        ++ L +    
Sbjct: 191 VAGRKVDDDVAIMMVEAEAT------DKVIELVEGGAQ 222


>gi|283781766|ref|YP_003372521.1| polyribonucleotide nucleotidyltransferase [Pirellula staleyi DSM
           6068]
 gi|283440219|gb|ADB18661.1| Polyribonucleotide nucleotidyltransferase [Pirellula staleyi DSM
           6068]
          Length = 744

 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 76/224 (33%), Gaps = 29/224 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R  GR    +R I     V     GS + + G+T  L T TL         +       
Sbjct: 312 IRSDGRDNRTLRNIECEVDVLPRVHGSAVFQRGETQALITITLGTAKDEQRVDGLFDEYA 371

Query: 59  --ITAEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                +Y     S G  R  R       G R      +  R++  V+         I + 
Sbjct: 372 KKFMLDYNFPSFSVGEVRPIRG-----PGRREIGHGALAERSVNPVLPAPEEFPYTIRVI 426

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            D+++++G +  A++ GA + L                   +   VA IS G++      
Sbjct: 427 SDIMESNGSSSMASVCGATLGLMAAGV-------------PISNPVAGISVGLVRESEQN 473

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
              + D+   ED   D+D     T +G I  +Q   +    S D
Sbjct: 474 WVLLTDIIGDEDHFGDMDFKIAGTQNG-ITGIQLDLKVEGISTD 516



 Score = 82.4 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 85/231 (36%), Gaps = 34/231 (14%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLL-TTATLE--EKVPMWIRNTKHGWITAEYGMLPRS 69
            S       K A  + L ++GDT ++   A+      +  +     +   TA  G  P  
Sbjct: 14  FSFETGYLAKQAAAAVLCQYGDTVVMNAAASGPGRPGIDFFPLTCDYRERTAAAGKFP-- 71

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI----QADGGT 125
            G  +KRE   GR   +     R++ R +R +         QI     V+    Q DG  
Sbjct: 72  -GGFIKRE---GRPTTKETLTSRLVDRPIRPLFPKGFRDEVQIQ--SIVLSSDKQNDGDV 125

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              A+ GA  AL             F  +    G +A++  G + G  +    + +  T 
Sbjct: 126 L--AMNGAGCAL-------------FISALPFNGPIASVRVGRINGQFVAFPTHDDLETS 170

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D+D   V      +  ++G A      ++  F  +  A + I D+  LQ++
Sbjct: 171 DLDL-IVSGSEREVAMIEGFARE--LPENDMFEAILFAHNVIRDICALQRE 218


>gi|118471281|ref|YP_886993.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium smegmatis
           str. MC2 155]
 gi|187610287|sp|A0QVQ5|PNP_MYCS2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|118172568|gb|ABK73464.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Mycobacterium smegmatis str. MC2
           155]
          Length = 763

 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 84/243 (34%), Gaps = 12/243 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-----WIRNTK 55
            R+ GR    +R +S    V   A GS L + G+T +L   T  + + M      +    
Sbjct: 346 FRIDGRGITDIRALSAEVAVIPRAHGSALFERGETQIL-GVTTLDMIKMAQQIDSLGPEN 404

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 405 TKRYMHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPSIEEFPYAIRQV 460

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            + + ++G T   ++  + +AL +    ++       +  ++   V            + 
Sbjct: 461 SEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMG-LVSDDVDVDGKVEKRYVALT 519

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED+  D+D     T    +  +Q   +            L+ AKD    ++ +  
Sbjct: 520 DILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALSQAKDARLTILDVMA 578

Query: 236 DVI 238
           + I
Sbjct: 579 EAI 581



 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 71/249 (28%), Gaps = 44/249 (17%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM-----WIRNTKHGWITAEYGM 65
           R I      +++ A GS +    D  +L +AT   K P      +             G 
Sbjct: 25  RTIRFETGRLAQQAAGSAVAYLDDETMLLSATTASKNPKDHFDFFPLTVDVEERMYAAGR 84

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q+++    +      
Sbjct: 85  IP---GSFFRRE---GRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLD----- 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
                      L+D L       +         G V      ++ G  +      +    
Sbjct: 134 --------PKDLYDVLAINAASMSTQLAGLPFSGPVGGARIALIDGTWVAFPTVEQLERA 185

Query: 186 DVDANFVMTDSG------------------HIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
             D        G                  ++VE+     +A  ++      L  AK  I
Sbjct: 186 VFDMVVAGRIVGDGDSADVAIMMVEAEATENVVELVAGGAQAP-TEAVVAEGLEAAKPFI 244

Query: 228 ADLIKLQKD 236
             L   Q++
Sbjct: 245 KALCAAQQE 253


>gi|115705881|ref|XP_001204175.1| PREDICTED: similar to exosome component 6, partial
           [Strongylocentrotus purpuratus]
 gi|115757243|ref|XP_789674.2| PREDICTED: similar to exosome component 6, partial
           [Strongylocentrotus purpuratus]
          Length = 203

 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 51/171 (29%), Gaps = 47/171 (27%)

Query: 16  LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           L       A+GSC ++  +T ++       +VP       +G +  E+     ++     
Sbjct: 1   LKAGAVSQAKGSCYMEMKNTKVICAVYGPREVPRRDGFIINGQLRCEFKFATFASE---- 56

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
                                          +   Q+ I   V++ DG   +AAIT A +
Sbjct: 57  -----------------------------HKIPKSQVDIFITVLENDGSVLSAAITCASI 87

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
           A+ +    M D              V   S        ++D     D T +
Sbjct: 88  AVANAGIEMYDL-------------VIGSSLRQTGETLLLDPT-AFDETAE 124


>gi|73983964|ref|XP_857380.1| PREDICTED: similar to exosome component 9 isoform 2 [Canis
           familiaris]
          Length = 403

 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIKISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++ ++ +L +  + N+
Sbjct: 253 IAGVKVLEITELIQKALEND 272


>gi|302841757|ref|XP_002952423.1| hypothetical protein VOLCADRAFT_105481 [Volvox carteri f.
           nagariensis]
 gi|300262359|gb|EFJ46566.1| hypothetical protein VOLCADRAFT_105481 [Volvox carteri f.
           nagariensis]
          Length = 247

 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 79/241 (32%), Gaps = 38/241 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   Q+R +   R V   A+GS       + +L       +      + +   +  
Sbjct: 15  RARGRLPTQLRTLVCERSVLDRADGSAKWTQEGSSVLAAVYGPRQAKPQKEDAEQAVVEV 74

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            Y            R  + G +  R+ E++  +   L  V+ L       I++   V+Q 
Sbjct: 75  VY----------KPRAGLQGHED-RTFELE--VRGILEGVIPLGMYPRTSIMVVLQVLQG 121

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYG 180
           DG   + A+  A  AL D    M                 A+++C +      ++D D  
Sbjct: 122 DGAVLSCALNAACAALVDAGIAM-------------TSMYASVTCVLTEEERLLLDSDAA 168

Query: 181 EDSTIDVDANFVMTD--------SGHIV---EVQGSAERATFSQDHFFAMLNLAKDRIAD 229
           E+        F +           G +V      GS    +F+ DH      LA+     
Sbjct: 169 EEQAAKACFCFTVPHHYDLTKAIDGQVVISNAALGSRSYGSFTSDHMLDAFMLARLGCER 228

Query: 230 L 230
           +
Sbjct: 229 V 229


>gi|158339001|ref|YP_001520178.1| polynucleotide phosphorylase/polyadenylase [Acaryochloris marina
           MBIC11017]
 gi|158309242|gb|ABW30859.1| polyribonucleotide nucleotidyltransferase [Acaryochloris marina
           MBIC11017]
          Length = 646

 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 21/230 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKVPMWIRN-----T 54
           +R+ GR+ +++R IS    V      GS L   G T +L+ ATL         +     +
Sbjct: 252 VRVDGRKLDEVRPISCNVGVLPQRVHGSGLFNRGLTQVLSIATLGTPGDAQEMDDLHPDS 311

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +  ++   Y   P S G      +   R+ G       +  RAL  ++         + +
Sbjct: 312 QKRYLH-HYNFPPYSVGETRPMRSPGRREVGHG----ALAERALLPMLPSKEEFPYVLRV 366

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             +V+ ++G T   ++ G+ ++L D    +    +   +  + +G              +
Sbjct: 367 VSEVLSSNGSTSMGSVCGSTLSLMDAGVPLAKPVSGAAMGLIKEGEEV---------RVL 417

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
            D+   ED   D+D     T  G I  +Q   +    S       ++ AK
Sbjct: 418 TDIQGIEDFLGDMDFKVAGTADG-ITALQMDMKITGLSMKVIAEAIHQAK 466



 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 19/170 (11%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G  ++RE   GR   ++    R+I R +R +         QI+     +         A+
Sbjct: 3   GGFLRRE---GRPPEKATLTCRLIDRPMRPLFPNWLRDDLQIVATTISMDEQVPPDVLAV 59

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
           TGA VA                     KG +AA+  G++    I++  Y E S  ++D  
Sbjct: 60  TGASVATLLA-------------KIPFKGPMAAVRVGLVGDDFIINPTYEEISEGELDLV 106

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
              +  G ++ V+  A      +      ++   + + DLIK QK++I+ 
Sbjct: 107 VAGSPDG-VIMVEAGANEVA--EQDMIEAIDFGYEVVCDLIKAQKELIAE 153


>gi|72041533|ref|XP_796992.1| PREDICTED: similar to Exosome component 8 [Strongylocentrotus
           purpuratus]
 gi|115958667|ref|XP_001194182.1| PREDICTED: similar to Exosome component 8 [Strongylocentrotus
           purpuratus]
          Length = 275

 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 88/256 (34%), Gaps = 25/256 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+  ++R   L       A GS LVK G+T ++     E   P  +   K G++ 
Sbjct: 22  VRPDGRELGEIRSTILNVGSISTAHGSALVKLGNTTVVCGIKGEFASPT-VEEPKKGYLV 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALG---SRQIII- 114
               + P  +          G    ++Q   +++   L S  +++   L       + + 
Sbjct: 81  PNVDLPPLCSAQ-----FKPGPPSIQAQVTSQLVADTLLSSNLLNYEDLCIKEGSMVWVL 135

Query: 115 DCDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAA 163
            CD+  +  DG    A +     AL +             + + S+    S  +    AA
Sbjct: 136 YCDMICLDYDGNIIDACLIALLAALRNVRLPVVTIAEDTGLAELSSTEDRSLNIVNQFAA 195

Query: 164 ISCGMLCGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
            +  +     ++ D    E+         ++T  G +  +         S D     +  
Sbjct: 196 TTFSVFDDSILLVDPTVEEEDLATGLMTVIVTQDGRLCNIHKPG-GTPLSTDQIQDCIGR 254

Query: 223 AKDRIADLIKLQKDVI 238
           A+ R  ++  L  D +
Sbjct: 255 AQTRAKEICSLIDDTL 270


>gi|229827407|ref|ZP_04453476.1| hypothetical protein GCWU000182_02795 [Abiotrophia defectiva ATCC
           49176]
 gi|229788345|gb|EEP24459.1| hypothetical protein GCWU000182_02795 [Abiotrophia defectiva ATCC
           49176]
          Length = 697

 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 76/230 (33%), Gaps = 29/230 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHL-----LTTATLEEKVPMWIRNTKH 56
           R  GR+  Q+R ++    +     GS +   G T +     L   +  +KV        +
Sbjct: 312 RPDGREMTQIRALAAETDIIPRVHGSAMFTRGQTQICNITTLAPLSEVQKVDGLNAEETY 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         I    
Sbjct: 372 KRYIHHYNFPSYSVGETKPSRGPGRREIGHG----ALAERALIPVLPSEEEFPYAIRTVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171
           +  +++G T  A+   + ++L                   +K  VA ISCG++ G     
Sbjct: 428 ETFESNGSTSMASTCASCMSLMAAGV-------------PIKKMVAGISCGLVTGDTDDD 474

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
              + D+   ED   D+D     T  G I  +Q   +    +++     +
Sbjct: 475 YVLLTDIQGLEDFFGDMDFKVTGTTDG-ITAIQMDIKIHGLTREIVEGAI 523



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 78/225 (34%), Gaps = 27/225 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL--TTAT--LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+K A G+ L+ +GDT +L   TA+    E +  +  + ++       G +
Sbjct: 12  RTLTVDVDRVAKQANGAALMHYGDTVVLSTCTASEKPREGIDFFPLSVEYEEKQYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +       
Sbjct: 72  P---GGFNKRE---GKASENAVLTSRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPTCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  A    G++ G  +++    E +   
Sbjct: 126 LTAMLGSAIATA-------------ISDVPFDGPCATTQVGLIDGEFVINPSNAEMANSA 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           +      T    ++ ++  A+     +      +  A +   ++I
Sbjct: 173 LKLTVASTKE-KVIMIEAGADEIP--EAKMIEAIYKAHEVNQEII 214


>gi|126330626|ref|XP_001362882.1| PREDICTED: similar to polymyositis/scleroderma autoantigen 1
           isoform 2 [Monodelphis domestica]
          Length = 436

 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIKISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEITLYALEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           IS        Y +VD +  E+  +D      M     I  +Q S       QD       
Sbjct: 194 ISFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLQDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L    + N+
Sbjct: 253 IAGVKVAEITELILKALEND 272


>gi|329896238|ref|ZP_08271416.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           IMCC3088]
 gi|328921909|gb|EGG29276.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
           IMCC3088]
          Length = 746

 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 81/230 (35%), Gaps = 26/230 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R+I+ +  +     GS L   G+T  +   TL           +   +  
Sbjct: 314 RIDGRDGKTVRQIACSVDLLPRVHGSALFTRGETQAIGAVTLGSPRDAQIIDALEGERKD 373

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  A   R+ G      R+  R L +V+         I +  +
Sbjct: 374 AFMLHYNFPPYSVGEAGRVGATGRREIGHG----RLARRGLAAVLPNQDEFPYTIRVVSE 429

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YP 173
           + +++G +  A++    +A+                   LK  VA I+ G++        
Sbjct: 430 ITESNGSSSMASVCVGSLAMMAAGV-------------PLKAPVAGIAMGLVKEGNQFAV 476

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
           + D+   ED   D+D     T +G +  +Q   +    ++      L  A
Sbjct: 477 LTDILGDEDHLGDMDFKVAGTAAG-VTALQMDIKIEGINEQIMEIALEQA 525



 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 81/235 (34%), Gaps = 32/235 (13%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    +++ A G+ LV   +T +L T     + +     +  +  +   +   G +P 
Sbjct: 15  VTLETGRIARQATGAVLVTVENTTVLVTVVAAKSQKPGQDFFPLSVHYQEKSYAVGKIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTR 126
             G   KRE   GR   +     R+I R +R +     +   Q  + C V+ AD      
Sbjct: 74  --GGFFKRE---GRPSEKETLTSRLIDRPIRPLFADGFMNEVQ--VMCTVMAADDHIDPD 126

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTI 185
             A+ G   AL                     G + A   G       +++ DY      
Sbjct: 127 IPAMIGTSAALA-------------ISGVPFNGPIGAARVGFNAQEGYLLNPDYNALKGS 173

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D+D     T    ++     +E    ++D     +  A   +  +I    ++++ 
Sbjct: 174 DLDMVVAGTKDAVLMV---ESEAKELTEDQMLGAVLFAHQEMQTVIAAINELVAE 225


>gi|160940474|ref|ZP_02087819.1| hypothetical protein CLOBOL_05364 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437054|gb|EDP14821.1| hypothetical protein CLOBOL_05364 [Clostridium bolteae ATCC
           BAA-613]
          Length = 707

 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 80/230 (34%), Gaps = 29/230 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TT-ATLEE--KVPMWIRNTKH 56
           R  GR   ++R ++    +     GS +   G T +L   T A L E  K+     N   
Sbjct: 312 RPDGRAITEIRHLAAEVDLLPRVHGSGMFTRGQTQILNACTLAPLSEAQKLDGLDENETS 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+  +      I    
Sbjct: 372 KRYMHHYNFPSFSVGETKPSRGPGRREIGHG----ALAERALIPVLPSAEEFPYAIRTVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + ++++G T  A+I  + ++L                   LK  VA ISCG++ G     
Sbjct: 428 ETMESNGSTSQASICASTLSLMAAGV-------------PLKEMVAGISCGLVTGDTDDD 474

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
              + D+   ED   D+D     T +G I  +Q   +    ++      +
Sbjct: 475 YLVLTDIQGLEDFFGDMDFKVGGTKNG-ITAIQMDIKIHGLTRPIIEEAI 523



 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 79/226 (34%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R++++    V+  A G+  + +GDT +L+TAT      E +  +  + ++       G +
Sbjct: 12  RKLTVEVGRVAAQASGAAFMHYGDTVVLSTATASSKPREGIDFFPLSVEYEEKLYSVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  +    
Sbjct: 72  P---GGFNKRE---GKASENAVLTCRVIDRPMRPLFPKDYRNDVTLDNIVMCVDPNCSPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  A    G++ G  I++    +    D
Sbjct: 126 LTAMLGSAIA-------------TSISDIPFAGPCATTQVGLIDGEFIINPTADQKQVSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +      T    ++ ++  A      +      +  A +   ++IK
Sbjct: 173 MALTVASTRE-KVIMIEAGANEVP--EQIMIDAIFRAHEVNQEIIK 215


>gi|218662070|ref|ZP_03518000.1| ribonuclease PH [Rhizobium etli IE4771]
          Length = 75

 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/48 (68%), Positives = 40/48 (83%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP 48
          MR SGR+ +QMR++S  R  SK+AEGSCLVKFGDTH+L TA+LEEK P
Sbjct: 17 MRPSGRKTDQMRKVSFERNFSKHAEGSCLVKFGDTHVLCTASLEEKTP 64


>gi|332244454|ref|XP_003271389.1| PREDICTED: exosome complex exonuclease RRP45 isoform 3 [Nomascus
           leucogenys]
          Length = 392

 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A V+L    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVSLCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L    + N+
Sbjct: 253 IAGVKVAEITELILKALEND 272


>gi|328771377|gb|EGF81417.1| hypothetical protein BATDEDRAFT_23824 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 217

 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 68/215 (31%), Gaps = 29/215 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R   Q+R +     +   A+GS     G + +L +               H  I  
Sbjct: 18  RPDKRSVTQLRTMGCVVGMLSRADGSARFTLGKSSVLCSVYGPTASRPRDEKLDHAHIQV 77

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            +  +   +G              R+ E    I + + ++V  +      I I   V+  
Sbjct: 78  VFSPVSGISGT-----------QERTYE--HFIRQVVEAIVLSALHPRTTIQITLQVLFD 124

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYG 180
           DG   + AI  A +AL D                 L    +A++C +   G  ++D    
Sbjct: 125 DGSILSTAINAAVLALIDAGI-------------PLSKTCSAVTCMISKEGVLLLDPVLL 171

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
           E S      + ++ D+    EV        F  D 
Sbjct: 172 ECSEAQS-MHILVPDA-TFSEVLAVHSTGLFETDE 204


>gi|221128137|ref|XP_002160444.1| PREDICTED: similar to 3 exoribonuclease [Hydra magnipapillata]
          Length = 437

 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 92/261 (35%), Gaps = 30/261 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GRQ    R IS+      Y  G C V+ G+T +L   +  E V         G + 
Sbjct: 24  IRLDGRQAFDYRNISIQFG-IDY--GCCEVQLGETRVLAQTS-CELVKPIGTRPTEGQLH 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSR--QI 112
               + P ++ +       +GR   +  EI R+I R ++    +D+ +L    G +   I
Sbjct: 80  LNVDLSPMASPS-----FETGRMTSQGLEINRLIERCIKESRCIDVESLCLIAGEKVWSI 134

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHD----------CLQHMEDCSNKFQLSQVLKGHVA 162
            +D  V+   G     +      +L                + +   K  +   +     
Sbjct: 135 RVDIVVLNDCGNILDCSCIAGIASLAHFKHHDVTVTGTEVIIHNFKEKDPIPLNVHHMPI 194

Query: 163 AISCGMLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           + + G +      I+D +  E+S +           G +   Q S    +F  +      
Sbjct: 195 STTFGFIDDGEQMIIDPEEKEESILSGKLIMAFNIYGEVCCAQMSG-GVSFDYEQILQCA 253

Query: 221 NLAKDRIADLIKLQKDVISNE 241
            ++  + +++  + K  +  +
Sbjct: 254 KISSVKSSEITNIIKTALDED 274


>gi|332244452|ref|XP_003271388.1| PREDICTED: exosome complex exonuclease RRP45 isoform 2 [Nomascus
           leucogenys]
          Length = 456

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A V+L    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVSLCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L    + N+
Sbjct: 253 IAGVKVAEITELILKALEND 272


>gi|221131497|ref|XP_002158932.1| PREDICTED: similar to Exosome component 8 [Hydra magnipapillata]
          Length = 272

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 91/255 (35%), Gaps = 30/255 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  ++ R+  +     K A GS LV+ G+T ++        V +++         
Sbjct: 22  IRPDGRALDEYRKTIVNINSIKTASGSGLVRIGNTIVVCGIK---AVSLFL---NFCLPN 75

Query: 61  A-EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSALGSRQ------ 111
                +    +      E   G    ++Q + +++   + +   ++L  L  ++      
Sbjct: 76  VPNVDLPALCSH-----EFRPGPPSDQAQAMSQLVAETVENCKLINLKKLCIKEKKLCWV 130

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV---------LKGHVA 162
           I  D   I  DG    A I   ++AL +    +   + +    +          L   ++
Sbjct: 131 IYADIICISHDGNLIDAIIASLYIALLNTKLPVVTINEETGSPEASPTEQFTLELTTRLS 190

Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
           + +  ++    +VD  Y E+         ++ D  +I+ +       + ++D     +  
Sbjct: 191 STTVELIDNKLLVDPTYEEEQLSLSSLTIILGDEKNIISMYKPG-GCSVNEDSVRTCIKY 249

Query: 223 AKDRIADLIKLQKDV 237
           A  R  +L  L  + 
Sbjct: 250 AIHRAEELDSLIHEA 264


>gi|221053137|ref|XP_002257943.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
           knowlesi strain H]
 gi|193807775|emb|CAQ38480.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
           knowlesi strain H]
          Length = 268

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 93/245 (37%), Gaps = 25/245 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R++ R+ N++R++ +      Y++ SC    G+T +L       K          G +  
Sbjct: 32  RINNRKNNEIRDMFIKLGTDGYSDASCFYSLGNTKILALIYGP-KPDSKNATYDKGKVFL 90

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           E   L  +  +R   E+           I+ ++   + SV+ L       I I C +IQ 
Sbjct: 91  EIKSLNMN-DDRANDESDEN--------IKNLLLECVSSVILLDQYPQCSINIKCLIIQN 141

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGG  +A +T   +AL +    M D      ++ ++  +   +       + +VD+D  E
Sbjct: 142 DGGCLSATLTCISLALINAQIKMRDIIVSVNVNSIICPNTKRV-------FHLVDVDNLE 194

Query: 182 DSTID--VDANFVMTD----SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           +       D N +          +    GS    +F+      +++ A+     L    K
Sbjct: 195 EKYYGEKYDTNSITLGICLNLRTVCFFHGSG--NSFNSKTLSEIISYAECACRSLGCEIK 252

Query: 236 DVISN 240
            V+ N
Sbjct: 253 TVLKN 257


>gi|126330624|ref|XP_001362799.1| PREDICTED: similar to polymyositis/scleroderma autoantigen 1
           isoform 1 [Monodelphis domestica]
          Length = 438

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIKISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEITLYALEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           IS        Y +VD +  E+  +D      M     I  +Q S       QD       
Sbjct: 194 ISFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLQDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L    + N+
Sbjct: 253 IAGVKVAEITELILKALEND 272


>gi|239620975|ref|ZP_04664006.1| polynucleotide nucleotidyl transferase [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|322689964|ref|YP_004209698.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           subsp. infantis 157F]
 gi|322691904|ref|YP_004221474.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|239516076|gb|EEQ55943.1| polynucleotide nucleotidyl transferase [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|320456760|dbj|BAJ67382.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|320461300|dbj|BAJ71920.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           subsp. infantis 157F]
          Length = 913

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 91/249 (36%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R +S    +     GS L + G+T +L   TL     E+    +   +  
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P STG   +  +   R+ G       +  +AL  V+         I    +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHG----ALAEKALVPVLPSREEFPYAIRQVSE 461

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            I ++G T   ++  + ++L                   LK  VA I+ G++ G      
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGV-------------PLKAPVAGIAMGLVSGDVDGKH 508

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    I  +Q   +      D   A L  AK+  A 
Sbjct: 509 IFKTLTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAAALQQAKEARAT 567

Query: 230 LIKLQKDVI 238
           ++++  + I
Sbjct: 568 ILEVINECI 576



 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 76/247 (30%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   D+ +L      ++ +E    +             G
Sbjct: 21  RTLRFETGRLAQQADGAVAAYLDD-DSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     +  D  
Sbjct: 80  KIP---GSFFRRE---GRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDA 133

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  +                     +G V+ +   ++ G  +    + E   
Sbjct: 134 YDVIALNAASAS-------------TMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER 180

Query: 185 I----DVDANFVMTDSGHIVEVQGSA----------ERATFSQDHFFA-MLNLAKDRIAD 229
                 V    +      I  ++  A          E  T   +   A  L  AK  I  
Sbjct: 181 AVFEIVVAGRVIENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKV 240

Query: 230 LIKLQKD 236
           + + Q +
Sbjct: 241 ICEAQDE 247


>gi|296454907|ref|YP_003662051.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296184339|gb|ADH01221.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 914

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 91/249 (36%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R +S    +     GS L + G+T +L   TL     E+    +   +  
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P STG   +  +   R+ G       +  +AL  V+         I    +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHG----ALAEKALVPVLPSREEFPYAIRQVSE 461

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            I ++G T   ++  + ++L                   LK  VA I+ G++ G      
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGV-------------PLKAPVAGIAMGLVSGDVDGKH 508

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    I  +Q   +      D   A L  AK+  A 
Sbjct: 509 IFKTLTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAAALQQAKEARAT 567

Query: 230 LIKLQKDVI 238
           ++++  + I
Sbjct: 568 ILEVINECI 576



 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 76/247 (30%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   D+ +L      ++ +E    +             G
Sbjct: 21  RTLRFETGRLAQQADGAVAAYLDD-DSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     +  D  
Sbjct: 80  KIP---GSFFRRE---GRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDA 133

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  +                     +G V+ +   ++ G  +    + E   
Sbjct: 134 YDVIALNAASAS-------------TMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER 180

Query: 185 I----DVDANFVMTDSGHIVEVQGSA----------ERATFSQDHFFA-MLNLAKDRIAD 229
                 V    +      I  ++  A          E  T   +   A  L  AK  I  
Sbjct: 181 AVFEIVVAGRVIENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKV 240

Query: 230 LIKLQKD 236
           + + Q +
Sbjct: 241 ICEAQDE 247


>gi|170582819|ref|XP_001896302.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
           malayi]
 gi|158596526|gb|EDP34857.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
           malayi]
          Length = 277

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 89/257 (34%), Gaps = 42/257 (16%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWITA- 61
            G  +N  R I +   V    +G+  V+FG T ++ +    +++      +   G I   
Sbjct: 44  DG--QNTFRSIVMQTGVLHDQKGTVYVEFGSTKIICSVDGPKEITKSADVDPTEGQIYVF 101

Query: 62  --EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
                    S        + S ++  R   I+  I  ALRS+V L      QI ++  V+
Sbjct: 102 LKNISAESNSLSGSNSF-SASNKESNR---IRNAIESALRSIVCLELFCKAQIDVEITVL 157

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
             DGG   A++  + +AL D    + D              VAA    +  G  IVD   
Sbjct: 158 NDDGGVLAASLIASSLALIDSGIQVYDV------------CVAAHIVMLTDGRIIVDPSI 205

Query: 180 ----------GEDSTIDVDANF---VMTDSGHIV--EVQGSAERATFSQDHFFAMLNLAK 224
                      ED   +   +    +M     +   E  G AE            + +A 
Sbjct: 206 SSFPLSSIPDSEDFPRNAHLSVTVGIMPSLNQLTCCEFVGIAEPH-----QLRHAIAVAV 260

Query: 225 DRIADLIKLQKDVISNE 241
           +    L  L +  ++N+
Sbjct: 261 ENSLKLYPLVRKTLTNK 277


>gi|298710388|emb|CBJ25452.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 230

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 62/181 (34%), Gaps = 21/181 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+ NQ+R ++  + +   A+GS     G+T +L                  G  T 
Sbjct: 5   RRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEG-ATL 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           +    P S           G       E + ++ R+L  VV  S      + +   VI  
Sbjct: 64  DVSFKPES-----------GITSSADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVD 112

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DG   +AA+  A +AL +    M   +               I+  +     ++D    E
Sbjct: 113 DGAVLSAALNAATMALLNAGVEMTGMALSV---------TCCITATVSGRSVLLDPCKAE 163

Query: 182 D 182
           +
Sbjct: 164 E 164


>gi|317483033|ref|ZP_07942035.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915534|gb|EFV36954.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 913

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 91/249 (36%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R +S    +     GS L + G+T +L   TL     E+    +   +  
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P STG   +  +   R+ G       +  +AL  V+         I    +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHG----ALAEKALVPVLPSREEFPYAIRQVSE 461

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            I ++G T   ++  + ++L                   LK  VA I+ G++ G      
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGV-------------PLKAPVAGIAMGLVSGDVDGKH 508

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    I  +Q   +      D   A L  AK+  A 
Sbjct: 509 IFKTLTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAAALQQAKEARAT 567

Query: 230 LIKLQKDVI 238
           ++++  + I
Sbjct: 568 ILEVINECI 576



 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 76/247 (30%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   D+ +L      ++ +E    +             G
Sbjct: 21  RTLRFETGRLAQQADGAVAAYLDD-DSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     +  D  
Sbjct: 80  KIP---GSFFRRE---GRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDA 133

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  +                     +G V+ +   ++ G  +    + E   
Sbjct: 134 YDVIALNAASAS-------------TMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER 180

Query: 185 I----DVDANFVMTDSGHIVEVQGSA----------ERATFSQDHFFA-MLNLAKDRIAD 229
                 V    +      I  ++  A          E  T   +   A  L  AK  I  
Sbjct: 181 AVFEIVVAGRVIENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKV 240

Query: 230 LIKLQKD 236
           + + Q +
Sbjct: 241 ICEAQDE 247


>gi|294668515|ref|ZP_06733612.1| tRNA nucleotidyltransferase [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291309478|gb|EFE50721.1| tRNA nucleotidyltransferase [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 65

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 38/64 (59%)

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +DY EDS  D D N VM   G I+E+QG+AE A F  D    ++ LA+  IA+L  LQ+ 
Sbjct: 1   MDYPEDSGCDSDINVVMNGEGKIIEIQGTAEGAPFDFDELAKLIKLAQKGIAELSALQQR 60

Query: 237 VISN 240
            ++ 
Sbjct: 61  ALAE 64


>gi|12847890|dbj|BAB27749.1| unnamed protein product [Mus musculus]
          Length = 395

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 96/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D  F    
Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVFRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L +  + N+
Sbjct: 253 IAGVKVAEITELIQKALEND 272


>gi|148703131|gb|EDL35078.1| exosome component 9, isoform CRA_a [Mus musculus]
 gi|148703133|gb|EDL35080.1| exosome component 9, isoform CRA_a [Mus musculus]
          Length = 437

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 96/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D  F    
Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVFRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L +  + N+
Sbjct: 253 IAGVKVAEITELIQKALEND 272


>gi|187957240|gb|AAI58076.1| Exosc9 protein [Mus musculus]
          Length = 438

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 96/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D  F    
Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVFRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L +  + N+
Sbjct: 253 IAGVKVAEITELIQKALEND 272


>gi|9506981|ref|NP_062266.1| exosome complex exonuclease RRP45 [Mus musculus]
 gi|14285679|sp|Q9JHI7|EXOS9_MOUSE RecName: Full=Exosome complex exonuclease RRP45; AltName:
           Full=Autoantigen PM/Scl 1; AltName: Full=Exosome
           component 9; AltName: Full=P75 polymyositis-scleroderma
           overlap syndrome-associated autoantigen; AltName:
           Full=Polymyositis/scleroderma autoantigen 1; AltName:
           Full=Polymyositis/scleroderma autoantigen 75 kDa;
           Short=PM/Scl-75
 gi|8132103|gb|AAF73218.1|AF152841_1 polymyositis scleroderma overlap syndrome (PM-SCL) antigen 1 a [Mus
           musculus]
 gi|8132105|gb|AAF73219.1|AF152842_1 polymyositis scleroderma overlap syndrome (PM-SCL) antigen 1 b [Mus
           musculus]
 gi|13542847|gb|AAH05622.1| Exosome component 9 [Mus musculus]
 gi|30354433|gb|AAH52156.1| Exosome component 9 [Mus musculus]
          Length = 438

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 96/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D  F    
Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVFRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L +  + N+
Sbjct: 253 IAGVKVAEITELIQKALEND 272


>gi|257062723|gb|ACV40374.1| ribosomal RNA-processing protein 46 [Hordeum vulgare subsp.
           vulgare]
          Length = 240

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 83/250 (33%), Gaps = 41/250 (16%)

Query: 7   QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
           + NQ+R  S TR   + A GS     GDT +L              N +   +   +   
Sbjct: 12  KANQLRAYSCTRNPLERAHGSARWAQGDTVVLAAVYGPRPGTRKGENPEKASLEVVWK-- 69

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
                        +G+ G + +E +  + R L+S+  L+   +    I   V+  DG   
Sbjct: 70  -----------PKTGQIGRQEKEYEMTLKRTLQSICLLTVHPNTTTSIILQVMGDDGSLL 118

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYGEDSTI 185
             AI  +  AL      M             K    AI CG+L  G  I+D    E+  +
Sbjct: 119 PCAINASCAALVFAGIPM-------------KHLAVAIGCGVLPDGSVILDTSKAEEQQL 165

Query: 186 DVDANFVMTDSGHIVEV----QGSAE----------RATFSQDHFFAMLNLAKDRIADLI 231
              A+ V  +S   V+V    Q   +              S+D +F  +       A + 
Sbjct: 166 KSFAHLVFPNSSLSVDVKEPQQKDGQSERGLITSITHGVMSEDDYFNCIERGLAASARIS 225

Query: 232 KLQKDVISNE 241
              +  +   
Sbjct: 226 DFMRTTLQKH 235


>gi|312133835|ref|YP_004001174.1| pnp [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773126|gb|ADQ02614.1| PnP [Bifidobacterium longum subsp. longum BBMN68]
          Length = 913

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 91/249 (36%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R +S    +     GS L + G+T +L   TL     E+    +   +  
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P STG   +  +   R+ G       +  +AL  V+         I    +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHG----ALAEKALVPVLPSREEFPYAIRQVSE 461

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            I ++G T   ++  + ++L                   LK  VA I+ G++ G      
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGV-------------PLKAPVAGIAMGLVSGDVDGKH 508

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    I  +Q   +      D   A L  AK+  A 
Sbjct: 509 IFKTLTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAAALQQAKEARAT 567

Query: 230 LIKLQKDVI 238
           ++++  + I
Sbjct: 568 ILEVINECI 576



 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 76/247 (30%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   D+ +L      ++ +E    +             G
Sbjct: 21  RTLRFETGRLAQQADGAVAAYLDD-DSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     +  D  
Sbjct: 80  KIP---GSFFRRE---GRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDA 133

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  +                     +G V+ +   ++ G  +    + E   
Sbjct: 134 YDVIALNAASAS-------------TMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER 180

Query: 185 I----DVDANFVMTDSGHIVEVQGSA----------ERATFSQDHFFA-MLNLAKDRIAD 229
                 V    +      I  ++  A          E  T   +   A  L  AK  I  
Sbjct: 181 AVFEIVVAGRVIENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKV 240

Query: 230 LIKLQKD 236
           + + Q +
Sbjct: 241 ICEAQDE 247


>gi|213693120|ref|YP_002323706.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|257096682|sp|B7GNH2|PNP_BIFLI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|213524581|gb|ACJ53328.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|320459298|dbj|BAJ69919.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 914

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 91/249 (36%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R +S    +     GS L + G+T +L   TL     E+    +   +  
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P STG   +  +   R+ G       +  +AL  V+         I    +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHG----ALAEKALVPVLPSREEFPYAIRQVSE 461

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            I ++G T   ++  + ++L                   LK  VA I+ G++ G      
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGV-------------PLKAPVAGIAMGLVSGDVDGQH 508

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    I  +Q   +      D   A L  AK+  A 
Sbjct: 509 IFKTLTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAAALQQAKEARAT 567

Query: 230 LIKLQKDVI 238
           ++++  + I
Sbjct: 568 ILEVINECI 576



 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 76/247 (30%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   D+ +L      ++ +E    +             G
Sbjct: 21  RTLRFETGRLAQQADGAVAAYLDD-DSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     +  D  
Sbjct: 80  KIP---GSFFRRE---GRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDA 133

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  +                     +G V+ +   ++ G  +    + E   
Sbjct: 134 YDVIALNAASAS-------------TMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER 180

Query: 185 I----DVDANFVMTDSGHIVEVQGSA----------ERATFSQDHFFA-MLNLAKDRIAD 229
                 V    V      I  ++  A          E  T   +   A  L  AK  I  
Sbjct: 181 AVFEIVVAGRVVENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKV 240

Query: 230 LIKLQKD 236
           + + Q +
Sbjct: 241 ICEAQDE 247


>gi|23336421|ref|ZP_00121639.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Bifidobacterium longum DJO10A]
 gi|23466099|ref|NP_696702.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           NCC2705]
 gi|189440526|ref|YP_001955607.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           DJO10A]
 gi|81753609|sp|Q8G447|PNP_BIFLO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|226702620|sp|B3DPX0|PNP_BIFLD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|23326831|gb|AAN25338.1| PnpA [Bifidobacterium longum NCC2705]
 gi|189428961|gb|ACD99109.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium longum
           DJO10A]
 gi|291516498|emb|CBK70114.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium longum
           subsp. longum F8]
          Length = 913

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 91/249 (36%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R +S    +     GS L + G+T +L   TL     E+    +   +  
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P STG   +  +   R+ G       +  +AL  V+         I    +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHG----ALAEKALVPVLPSREEFPYAIRQVSE 461

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            I ++G T   ++  + ++L                   LK  VA I+ G++ G      
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGV-------------PLKAPVAGIAMGLVSGDVDGKH 508

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    I  +Q   +      D   A L  AK+  A 
Sbjct: 509 IFKTLTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAAALQQAKEARAT 567

Query: 230 LIKLQKDVI 238
           ++++  + I
Sbjct: 568 ILEVINECI 576



 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 76/247 (30%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   D+ +L      ++ +E    +             G
Sbjct: 21  RTLRFETGRLAQQADGAVAAYLDD-DSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     +  D  
Sbjct: 80  KIP---GSFFRRE---GRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDA 133

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  +                     +G V+ +   ++ G  +    + E   
Sbjct: 134 YDVIALNAASAS-------------TMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER 180

Query: 185 I----DVDANFVMTDSGHIVEVQGSA----------ERATFSQDHFFA-MLNLAKDRIAD 229
                 V    +      I  ++  A          E  T   +   A  L  AK  I  
Sbjct: 181 AVFEIVVAGRVIENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKV 240

Query: 230 LIKLQKD 236
           + + Q +
Sbjct: 241 ICEAQDE 247


>gi|255073611|ref|XP_002500480.1| predicted protein [Micromonas sp. RCC299]
 gi|226515743|gb|ACO61738.1| predicted protein [Micromonas sp. RCC299]
          Length = 838

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 81/241 (33%), Gaps = 14/241 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKH 56
           +R  GR    +R I+ +  +     GS L   G+T  +  ATL           + N K 
Sbjct: 407 VRQDGRDTKTVRPITCSGGLLPRTHGSSLFTRGETQAIAAATLGGATDAQKVDGLGNDKD 466

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  A S R+ G       +  RAL  V+         + ++ 
Sbjct: 467 RRFYLHYFFPPSSVGETGRVGAASRREVGHG----NLAERALMPVIPPYDDFPFTVRLES 522

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
            + +++G +  A +    +AL D    +        +  +L    A  +  +     + D
Sbjct: 523 TITESNGSSSMATVCAGSLALQDAGVPITRKVAGIAMGLILGDESAGEAPVI-----LTD 577

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D        G I   Q   +    +       L  A+  +  ++     
Sbjct: 578 ILGSEDALGDMDFKVAGDGDG-ISAFQMDIKVEGITLAVLREALESARVGLVHILGEMDK 636

Query: 237 V 237
            
Sbjct: 637 A 637



 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 76/223 (34%), Gaps = 29/223 (13%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY----GMLP 67
           E+++      + A G+ +V  G+T +  T      V     +     +T  Y      + 
Sbjct: 62  EVTVETGRIGRQANGAVMVTEGETVIYATICAGRDVT---ADGGFVPLTVNYQERYSAVG 118

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
           R+ G   KR+   G        I R++ R LR ++        QI+    V+  DG   T
Sbjct: 119 RTAGGYRKRD---GGVRENETLIGRLVDRPLRPMIPKGWAYDTQILE--WVLSYDGARST 173

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--YPIVDLDYGEDSTI 185
                      D L               LK  +A +  G+L G   P+++    +    
Sbjct: 174 -----------DALAITAASCAAAISDVPLKKPIAGVRVGLLPGETEPLINPTCEQMERS 222

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
            +D     T+   ++ ++G  +    +       +    + +A
Sbjct: 223 RLDLVLAGTEDA-VMMIEGFGD--FLTTQEMLYAIEKGHEAVA 262


>gi|291456054|ref|ZP_06595444.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium breve
           DSM 20213]
 gi|291382463|gb|EFE89981.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium breve
           DSM 20213]
          Length = 949

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 91/249 (36%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R +S    +     GS L + G+T +L   TL     E+    +   +  
Sbjct: 393 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 452

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P STG   +  +   R+ G       +  +AL  V+         I    +
Sbjct: 453 RYMHNYEMPPYSTGETGRVGSPKRREIGHG----ALAEKALVPVLPSREEFPYAIRQVSE 508

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            I ++G T   ++  + ++L                   LK  VA I+ G++ G      
Sbjct: 509 AIGSNGSTSMGSVCASTLSLLAAGV-------------PLKAPVAGIAMGLVSGDVDGKH 555

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    I  +Q   +      D   A L  AK+  A 
Sbjct: 556 IFKTLTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAAALQQAKEARAT 614

Query: 230 LIKLQKDVI 238
           ++++  + I
Sbjct: 615 ILEVINECI 623



 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 76/247 (30%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   D+ +L      ++ +E    +             G
Sbjct: 68  RTLRFETGRLAQQADGAVAAYLDD-DSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAG 126

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     +  D  
Sbjct: 127 KIP---GSFFRRE---GRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDA 180

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  +                     +G V+ +   ++ G  +    + E   
Sbjct: 181 YDVIALNAASAS-------------TMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER 227

Query: 185 I----DVDANFVMTDSGHIVEVQGSA----------ERATFSQDHFFAM-LNLAKDRIAD 229
                 V    V      I  ++  A          E  T   +   A  L  AK  I  
Sbjct: 228 AVFEIVVAGRVVENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAAGLEAAKPFIKV 287

Query: 230 LIKLQKD 236
           + + Q +
Sbjct: 288 ICEAQDE 294


>gi|15232342|ref|NP_191609.1| CER7 (ECERIFERUM 7); 3'-5'-exoribonuclease/ RNA binding
           [Arabidopsis thaliana]
 gi|42572741|ref|NP_974466.1| CER7 (ECERIFERUM 7); 3'-5'-exoribonuclease/ RNA binding
           [Arabidopsis thaliana]
 gi|7287998|emb|CAB81836.1| nucleolar autoantigen-like protein [Arabidopsis thaliana]
 gi|28393589|gb|AAO42214.1| putative nucleolar autoantigen protein [Arabidopsis thaliana]
 gi|28973593|gb|AAO64121.1| putative nucleolar autoantigen protein [Arabidopsis thaliana]
 gi|113196170|gb|ABI31441.1| CER7 [Arabidopsis thaliana]
 gi|332646547|gb|AEE80068.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
 gi|332646548|gb|AEE80069.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
 gi|332646549|gb|AEE80070.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
          Length = 438

 Score = 89.0 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 92/264 (34%), Gaps = 43/264 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMWIRNTKHGW 58
           +R+ GR     R++++         GS  V+ G TH++   TA L   V  +      G 
Sbjct: 27  LRVDGRGLYDYRKLTIKFG---KEYGSSEVQLGQTHVMGFVTAQL---VQPYKDRPNEGS 80

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALG---SRQII 113
           ++      P +  +        GR G  + E+ R+I R LR    VD  +L     + + 
Sbjct: 81  LSIFTEFSPMADPS-----FEPGRPGESAVELGRIIDRGLRESRAVDTESLCVLAGKMVW 135

Query: 114 ---IDCDVIQADGGT----------------RTAAITGAWVALHDCLQHMEDCSNKFQLS 154
              ID  ++   G                  R     G        +  +E+   +  L 
Sbjct: 136 SVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEVIIHPLEE---REPLP 192

Query: 155 QVLKGHVAAISCGMLC--GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFS 212
            ++     A + G        ++D  Y E++ +       +  +G I  +Q   E    +
Sbjct: 193 LIIHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDICAIQKPGEEGV-N 251

Query: 213 QDHFFAMLNLAKDRIADLIKLQKD 236
           Q      L LA  R A   K+ ++
Sbjct: 252 QSVILHCLRLASSRAAATTKIIRE 275


>gi|295110267|emb|CBL24220.1| polyribonucleotide nucleotidyltransferase [Ruminococcus obeum
           A2-162]
          Length = 697

 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 75/231 (32%), Gaps = 31/231 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ  Q+R ++    +     GS +   G T  + T T    +    R         
Sbjct: 312 RPDGRQITQIRPLAAEVDIIPRVHGSAMFTRGQTQ-ICTMTTLAPLSEAQRIDGLDEFET 370

Query: 62  E------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G          R+ G       +  RAL  V+  +      I   
Sbjct: 371 SKRYMHHYNFPSYSVGETKPSRGPGRREIGHG----ALAERALVPVLPSAEEFPYAIRTV 426

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            +  +++G T  A+I  + ++L                   ++  VA ISCG++ G    
Sbjct: 427 SETFESNGSTSQASICASTMSLMAAGV-------------PIRKPVAGISCGLVTGATDD 473

Query: 173 ---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
               + D+   ED   D+D     T  G I  +Q   +    ++      +
Sbjct: 474 DYIVLTDIQGLEDFFGDMDFKVAGTHDG-ITAIQMDIKIHGLTRQIVEEAI 523



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 85/234 (36%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+K A G+ L+ +GDT +L+TAT      E +  +  + ++       G +
Sbjct: 12  RTLTVDIGRVAKQANGAALMHYGDTTVLSTATASKEPREGIDFFPLSVEYEEKMYAVGKI 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          ++     +  +    
Sbjct: 72  P---GGFNKRE---GKASEHAILTSRVIDRPMRPLFPKDYRNDVTLVNMVMSVDPECNPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  A    G++ G  I++    +    D
Sbjct: 126 IPAMLGSSIA-------------TCISDIPFDGPCATTQVGLIDGEFIINPSLAQKELSD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    ++ ++  A      +D     +  A D   ++I+    +++ 
Sbjct: 173 LQLTVASTRE-KVIMIEAGANEVP--EDTMIEAIYKAHDVNQEIIRFIDKIVAE 223


>gi|70794772|ref|NP_001020577.1| exosome complex component RRP45 [Rattus norvegicus]
 gi|81918190|sp|Q4QR75|EXOS9_RAT RecName: Full=Exosome complex component RRP45; AltName:
           Full=Exosome component 9
 gi|67678411|gb|AAH97413.1| Exosome component 9 [Rattus norvegicus]
 gi|149048739|gb|EDM01280.1| exosome component 9, isoform CRA_b [Rattus norvegicus]
 gi|149048740|gb|EDM01281.1| exosome component 9, isoform CRA_b [Rattus norvegicus]
          Length = 437

 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 96/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D  F    
Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVFRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L +  + N+
Sbjct: 253 IAGVKVAEITELIQKALEND 272


>gi|227546434|ref|ZP_03976483.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|227213091|gb|EEI80970.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium longum
           subsp. infantis ATCC 55813]
          Length = 913

 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 91/249 (36%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R +S    +     GS L + G+T +L   TL     E+    +   +  
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P STG   +  +   R+ G       +  +AL  V+         I    +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHG----ALAEKALVPVLPSREEFPYAIRQVSE 461

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            I ++G T   ++  + ++L                   LK  VA I+ G++ G      
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGV-------------PLKAPVAGIAMGLVSGDVDGKH 508

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    I  +Q   +      D   A L  AK+  A 
Sbjct: 509 IFKTLTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAAALQQAKEARAT 567

Query: 230 LIKLQKDVI 238
           ++++  + I
Sbjct: 568 ILEVINECI 576



 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 76/247 (30%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   D+ +L      ++ +E    +             G
Sbjct: 21  RTLRFETGRLAQQADGAVAAYLDD-DSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     +  D  
Sbjct: 80  KIP---GSFFRRE---GRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDA 133

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  +                     +G V+ +   ++ G  +    + E   
Sbjct: 134 YDVIALNAASAS-------------TMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER 180

Query: 185 I----DVDANFVMTDSGHIVEVQGSA----------ERATFSQDHFFA-MLNLAKDRIAD 229
                 V    +      I  ++  A          E  T   +   A  L  AK  I  
Sbjct: 181 AVFEIVVAGRVIENGDVAIAMIEAGAGKNAWRLIYDEGQTKPDEEVVAGGLEAAKPFIKV 240

Query: 230 LIKLQKD 236
           + + Q +
Sbjct: 241 ICEAQDE 247


>gi|145224603|ref|YP_001135281.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium gilvum
           PYR-GCK]
 gi|315444934|ref|YP_004077813.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Mycobacterium sp. Spyr1]
 gi|189037310|sp|A4TCH6|PNP_MYCGI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|145217089|gb|ABP46493.1| Polyribonucleotide nucleotidyltransferase [Mycobacterium gilvum
           PYR-GCK]
 gi|315263237|gb|ADT99978.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Mycobacterium sp. Spyr1]
          Length = 756

 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 90/247 (36%), Gaps = 13/247 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    V   A GS L + G+T ++   T  + V M  +    G  T
Sbjct: 346 FRIDGRGVTDIRALSAEVAVIPRAHGSALFERGETQIM-GVTTLDMVKMAQQIDSLGPET 404

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +      Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 405 SKRYMHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERALMPVLPSVEEFPYAIRQV 460

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            + + ++G T   ++  + ++L +    ++       +  ++   V     G+   +  +
Sbjct: 461 SEALSSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMG-LVSDDVEVEGGGVERRFVTL 519

Query: 176 -DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED+  D+D     T    +  +Q   +            L  AKD    ++++ 
Sbjct: 520 TDILGAEDAFGDMDFKCAGTKDF-VTALQLDTKLDGIPSQVLAGALAQAKDARITILEVM 578

Query: 235 KDVISNE 241
            + I   
Sbjct: 579 AEAIDEP 585



 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 70/240 (29%), Gaps = 38/240 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM--LPR 68
           R I      +++ A G+ +    D  +L +AT   K P    +     I  E  M    R
Sbjct: 25  RTIRFETGRLARQAAGAVVAYLDDETMLLSATTASKQPKEHFDFFPLTIDVEERMYAAGR 84

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR    +    R+I R LR           Q+++    +         
Sbjct: 85  IPGSFFRRE---GRPSTDAILTCRLIDRPLRPTFISGLRNEIQVVVTVLSLD-------- 133

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
                   L+D L      ++         G V  +   ++ G  +      +      D
Sbjct: 134 -----PKDLYDVLAINAASASTQISGIPFNGPVGGVRVALIDGQWVAFPTVEQLEKAVFD 188

Query: 189 ANFVMTDSG------------------HIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
                   G                   ++E+      A  ++      L  AK  IA L
Sbjct: 189 MVVAGRKVGDAGNEDVAIMMVEAEATDKVIELVAGGAGAP-TEAVVAEGLEAAKPFIAAL 247


>gi|332244450|ref|XP_003271387.1| PREDICTED: exosome complex exonuclease RRP45 isoform 1 [Nomascus
           leucogenys]
          Length = 439

 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A V+L    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVSLCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L    + N+
Sbjct: 253 IAGVKVAEITELILKALEND 272


>gi|301776905|ref|XP_002923870.1| PREDICTED: exosome complex exonuclease RRP45-like [Ailuropoda
           melanoleuca]
          Length = 440

 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIKISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++ ++ +L +  + N+
Sbjct: 253 IAGVKVLEITELIQKALEND 272


>gi|221114702|ref|XP_002157039.1| PREDICTED: similar to Exosome complex exonuclease RRP42 [Hydra
           magnipapillata]
          Length = 279

 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 73/257 (28%), Gaps = 35/257 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
            R  GR  N  R I++   +     GS  VK   T++L     E   P+       G   
Sbjct: 22  FRTDGRSCNDYRAITVQTGIISNTSGSAQVKLAGTNVLIGVKAEISEPL-PSKPNLGKVE 80

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS------R 110
             +       P                   + E+   +       +DL  L         
Sbjct: 81  FFVDCSANASPI---------FEGRGGDELAFELSAALQNTFSGAIDLEKLCIIPGKACW 131

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQH-MEDCSNKFQLSQVLKGH--------- 160
            + ID  V++  G    A       ALH+     +       + S  +            
Sbjct: 132 ILYIDALVLECGGNLFDALSIAVKAALHNTRIPTLSIIGEGAEKSIEVSDDPYNSTPIDV 191

Query: 161 ---VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
                 ++   +    IVD    E+   D      +   G++  VQ        + D  F
Sbjct: 192 SNIPVLVTLNKVGERYIVDATAEEEICSDAQLLVSINQKGNVCSVQKHGSGG-INPDLLF 250

Query: 218 AMLNLAKDRIADLIKLQ 234
            ML + +  I  ++  Q
Sbjct: 251 EMLKVGRK-IGRILNEQ 266


>gi|331002061|ref|ZP_08325581.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae oral
           taxon 107 str. F0167]
 gi|330411857|gb|EGG91262.1| polyribonucleotide nucleotidyltransferase [Lachnospiraceae oral
           taxon 107 str. F0167]
          Length = 700

 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 82/231 (35%), Gaps = 31/231 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHL--LTT-ATLEEKVP---MWIRNTK 55
           R  GR  NQ+R ++    +     GS +   G T +  + T A L E      + +  T 
Sbjct: 315 RPDGRAMNQIRTLAAETDIIPRVHGSAMFTRGQTQICNIVTLAPLSEAQKIDGLNLLETT 374

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I  +Y     S G          R+ G       +  RAL  V+         I   
Sbjct: 375 KRYIH-QYNFPSYSVGETRPSRGPGRREIGHG----ALAERALIPVLPTPEEFPYAIRSV 429

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---- 171
            +  +++G T  A+   + +AL                   +K  VA ISCG++ G    
Sbjct: 430 SETFESNGSTSMASTCSSCMALMAAGV-------------PIKRMVAGISCGLVTGDSDD 476

Query: 172 --YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
               + D+   ED   D+D     TD G I  +Q   +    +QD     +
Sbjct: 477 DYVLLTDIQGLEDFFGDMDFKVTGTDMG-ITAIQMDIKIHGLTQDIVKGAI 526



 Score = 75.1 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 83/234 (35%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    V+  A G+ L+ +G+T +L+TAT      E +  +  + ++       G +
Sbjct: 15  RTLRVDIGRVAAQANGAALMHYGETTVLSTATASDKPREGIDFFPLSVEYEEKMYAVGKM 74

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          +      +  D    
Sbjct: 75  P---GGYNKRE---GKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNLVMSVDPDCSPE 128

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  A    GM+ G+ +V+ +  + +  D
Sbjct: 129 LTAMLGSAIATA-------------ISDIPFDGPCATTQIGMVGGFFVVNPNEEQMAVSD 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    ++ ++  A       +     +  A     ++I+    +++ 
Sbjct: 176 LKLTVASTRD-KVIMIEAGANEIP--DEKMIEAIYKADSVNKEIIEFIDKIVAE 226


>gi|73983962|ref|XP_533302.2| PREDICTED: similar to exosome component 9 isoform 1 [Canis
           familiaris]
          Length = 440

 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIKISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++ ++ +L +  + N+
Sbjct: 253 IAGVKVLEITELIQKALEND 272


>gi|281343292|gb|EFB18876.1| hypothetical protein PANDA_013099 [Ailuropoda melanoleuca]
          Length = 456

 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIKISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++ ++ +L +  + N+
Sbjct: 253 IAGVKVLEITELIQKALEND 272


>gi|319950925|ref|ZP_08024802.1| polynucleotide phosphorylase/polyadenylase [Dietzia cinnamea P4]
 gi|319435418|gb|EFV90661.1| polynucleotide phosphorylase/polyadenylase [Dietzia cinnamea P4]
          Length = 753

 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 90/254 (35%), Gaps = 32/254 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    V   A GS L + G+T ++   T  + V M  +    G  T
Sbjct: 355 FRIDGRGVRDIRALSAEVEVIPRAHGSALFERGETQIM-GVTTLDMVKMAQQIDSLGPET 413

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +      Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 414 SKRYMHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERALMPVLPSVEEFPYAIRQV 469

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            + + ++G T   ++  + ++L +                 LK  VA I+ G++      
Sbjct: 470 SEALGSNGSTSMGSVCASTLSLLNAGV-------------PLKAPVAGIAMGLVSDEVDG 516

Query: 174 ------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                 + D+   ED+  D+D     T    +  +Q   +      +     L  A++  
Sbjct: 517 ETRYVALTDILGAEDAFGDMDFKVAGTGMF-VTALQLDTKLDGIPSEVLAGALTQAREAR 575

Query: 228 ADLIKLQKDVISNE 241
             ++ +  + I   
Sbjct: 576 LTILDVMAEAIDEP 589



 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 77/237 (32%), Gaps = 26/237 (10%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM-----WIRNTKHGWITAEYGM 65
           RE+      ++K A GS +    D  +L +AT   K P      +             G 
Sbjct: 28  REVRFETGRLAKQAAGSVVAYLDDDTMLLSATTAGKHPKDHFDFFPLTVDVEERMYAAGR 87

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q+++    +      
Sbjct: 88  IP---GSFFRRE---GRPSTDAILTCRLIDRPLRPTFADGVRNEVQVVVTVMSLDPKDLY 141

Query: 126 RTAAITGAWVALHDCLQHM------EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
              AI  A  +                 +     +      VA  +   L G  + D+  
Sbjct: 142 DVVAINAASASTQLSGLPFSGPVGGVRVALIPTAADPAGQWVAFPTSEQLEG-AVFDMVV 200

Query: 180 GEDSTI---DVDANFVMTDS---GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
                    D D   +M ++    +++E      +A  +++     L  AK  IA+L
Sbjct: 201 AGRVVGSGDDADVAIMMVEAEATDNVIEKIAGGAQAP-TEEVVAQGLEAAKPFIAEL 256


>gi|167517347|ref|XP_001743014.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778113|gb|EDQ91728.1| predicted protein [Monosiga brevicollis MX1]
          Length = 256

 Score = 89.0 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 73/226 (32%), Gaps = 40/226 (17%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+RE+S    V+  A+GS   + G T +  +      VP+         I  
Sbjct: 12  REDGRAPNQLRELSCDFAVNSAADGSARFRLGQTCVEVSVFGFRGVPVRSELPDRSAIEV 71

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD----LSALGSRQIIIDCD 117
            +       G R   +A +                 LR  VD    +      Q  +   
Sbjct: 72  SFR---GVGGQRKVTDAAAENF--------------LRECVDCALQVHEQPRSQCAVAAH 114

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+Q DGG   A  +   +AL D    M +              V   S     G  ++D 
Sbjct: 115 VVQDDGGVLAALASATCLALLDAGLPMTNV------------FVGVSSAFDAKGGFLLDP 162

Query: 178 DYGEDSTIDVDANFVM---TDSGHIVEVQGSAERATFSQDHFFAML 220
              E +    +A  V+    + G ++  +   +    +      +L
Sbjct: 163 SATE-AQASANATVVLSCGAEGGRVLACE---QHGPLTPTQLDYVL 204


>gi|291401826|ref|XP_002717277.1| PREDICTED: exosome component 9 [Oryctolagus cuniculus]
          Length = 440

 Score = 88.6 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 96/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   + E   P   R T+ G +  
Sbjct: 23  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVSCELVAPKLNRATE-GILFC 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCMDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGMLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD    E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFQQGMYLLVDPTEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L +  + N+
Sbjct: 253 IAGVKVAEITELIQKALEND 272


>gi|153812986|ref|ZP_01965654.1| hypothetical protein RUMOBE_03393 [Ruminococcus obeum ATCC 29174]
 gi|149830933|gb|EDM86023.1| hypothetical protein RUMOBE_03393 [Ruminococcus obeum ATCC 29174]
          Length = 691

 Score = 88.6 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 75/231 (32%), Gaps = 31/231 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ  Q+R ++    +     GS +   G T  + T T    +    R         
Sbjct: 306 RPDGRQITQIRPLAAEVDIIPRVHGSAMFTRGQTQ-ICTMTTLAPLSEAQRIDGLDEFET 364

Query: 62  E------YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y     S G          R+ G       +  RAL  V+  +      I   
Sbjct: 365 SKRYMHHYNFPSYSVGETKPSRGPGRREIGHG----ALAERALVPVLPSAEEFPYAIRTV 420

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--- 172
            +  +++G T  A+I  + ++L                   ++  VA ISCG++ G    
Sbjct: 421 SETFESNGSTSQASICASTMSLMAAGV-------------PIRKPVAGISCGLVTGATDD 467

Query: 173 ---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
               + D+   ED   D+D     T  G I  +Q   +    ++      +
Sbjct: 468 DYIVLTDIQGLEDFFGDMDFKVAGTHDG-ITAIQMDIKIHGLTRQIVEEAI 517



 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 85/234 (36%), Gaps = 27/234 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +++    V+K A G+ L+ +GDT +L+TAT      E +  +  + ++       G +
Sbjct: 6   RTLTVDIGRVAKQANGAALMHYGDTTVLSTATASKEPREGIDFFPLSVEYEEKMYAVGKI 65

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          ++     +  +    
Sbjct: 66  P---GGFNKRE---GKASEHAILTSRVIDRPMRPLFPKDYRNDVTLVNMVMSVDPECNPE 119

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ G+ +A                      G  A    G++ G  +++    +    D
Sbjct: 120 IPAMLGSSIA-------------TCISDIPFDGPCATTQVGLIDGEFVINPSLAQKELSD 166

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +      T    ++ ++  A      +D     +  A D   ++I+    +++ 
Sbjct: 167 LQLTVASTRE-KVIMIEAGANEVP--EDTMIEAIYKAHDVNQEIIRFIDKIVAE 217


>gi|148691867|gb|EDL23814.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_b [Mus
           musculus]
          Length = 551

 Score = 88.6 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 14/165 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R IS    + K   GS L + G T +L T T +        +++   I  
Sbjct: 362 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 421

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   V+ R+ G       +  +AL  V+         I 
Sbjct: 422 VKDKNFMLHYEFPPYATNETGKVTGVNRRELGHG----ALAEKALCPVIPKDF--PFTIR 475

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK 158
           +  +V++++G +  A+  G  +AL D    +        +  V K
Sbjct: 476 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTK 520



 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 27/203 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPM---WIRNTKHGWITAEYGMLP 67
           R++ ++     ++A+G  +++ GDT ++ TA  + K            +    A  G +P
Sbjct: 58  RKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKASPSQFMPLVVDYRQKAAAAGRIP 117

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
               N ++RE  S     R     R+I R++R +         Q++  C+++  DG    
Sbjct: 118 ---TNYLRREIGS---SDREVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEP 169

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              A+ GA VAL                     G V A+  GM+ G  +V+    E S+ 
Sbjct: 170 DILAVNGASVALS-------------LSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSS 216

Query: 186 DVDANFVMTDSGHIVEVQGSAER 208
            ++          IV ++ SAE 
Sbjct: 217 TLNLVVAGAPKSQIVMLEASAEN 239


>gi|307206575|gb|EFN84575.1| Exosome complex exonuclease RRP42 [Harpegnathos saltator]
          Length = 296

 Score = 88.6 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 84/264 (31%), Gaps = 31/264 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R  GRQ+ + R + +  R+     GS  ++ G+T +L    +E   P      + G + 
Sbjct: 27  FRNDGRQKYEYRSLEIETRLMPQTNGSARLRIGNTDVLVGVKVEIDTP-HANKPEEGKLD 85

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRS--VVDLSALGS------RQ 111
                   +T       A  G+ G   + EI  ++  A R+    DL  L         +
Sbjct: 86  FFVDCSANAT------PAFEGKGGEDLATEISNLLSLAYRTPYAFDLKELCILPHKKCWK 139

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK------------- 158
           + +D  ++Q  G    A       AL++        +        +K             
Sbjct: 140 MYVDILILQCGGNLFDAVGAAVKAALYNTEIPRVVTAMLDGNEPDVKLSDDLYDCIKLNV 199

Query: 159 -GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
             +   I+   +    +VD    E+S         +  +G I  V      A+       
Sbjct: 200 TNYPVVITVCKIGDNCVVDPTPEEESCSVASLIMSVMPNGKITSVVKIG-YASLQPVTLI 258

Query: 218 AMLNLAKDRIADLIKLQKDVISNE 241
            ML + K     L +     +  E
Sbjct: 259 KMLEVGKSVALRLNQALLKGLQEE 282


>gi|73993249|ref|XP_857305.1| PREDICTED: similar to Exosome complex exonuclease RRP43 (Ribosomal
           RNA processing protein 43) (Exosome component 8) (p9)
           (Opa-interacting protein 2) isoform 3 [Canis familiaris]
          Length = 210

 Score = 88.6 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 63/186 (33%), Gaps = 23/186 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P        G++  
Sbjct: 23  RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEFAAPP-TDAPDKGYVVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115
              + P  +         SG  G  +Q   + I   +    ++    L    G    ++ 
Sbjct: 82  NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLSWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
           CD+  +  DG    A       AL +             + + + K +    ++ H  A 
Sbjct: 137 CDIICLDYDGNILDACTFALLAALKNAQLPEVTINEETGLAEVNLKKKSYLNIRTHPVAT 196

Query: 165 SCGMLC 170
           S  +  
Sbjct: 197 SFAVFD 202


>gi|229818418|ref|ZP_04448699.1| hypothetical protein BIFANG_03725 [Bifidobacterium angulatum DSM
           20098]
 gi|229784288|gb|EEP20402.1| hypothetical protein BIFANG_03725 [Bifidobacterium angulatum DSM
           20098]
          Length = 893

 Score = 88.6 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 90/249 (36%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R +S    +     GS L + G+T +L   TL     E+    +   +  
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQLDSLSGPQSK 405

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P STG   +  +   R+ G       +  +AL  V+         I    +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHG----ALAEKALVPVLPSREEFPYAIRQVSE 461

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            I ++G T   ++  + ++L                   LK  VA I+ G++ G      
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGV-------------PLKAPVAGIAMGLVSGDVDGKH 508

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    I  +Q   +      D   A L  AK+    
Sbjct: 509 IFKTLTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAAALQQAKEARTT 567

Query: 230 LIKLQKDVI 238
           ++++  + I
Sbjct: 568 ILEVINECI 576



 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 78/247 (31%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   DT +L      ++ +E    +             G
Sbjct: 21  RTLRFETGRLAQQADGAVAAYLDD-DTMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     +     
Sbjct: 80  KIP---GSFFRRE---GRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETILAV----N 129

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
            + A         +D +      ++        +G V+ +   ++ G  +    + +   
Sbjct: 130 PQDA---------YDVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPTWDQRER 180

Query: 185 I----DVDANFVMTDSGHIVEVQGSA----------ERATFSQDHFFA-MLNLAKDRIAD 229
                 V    +      I  ++  A          E  T   +   A  L  AK  I  
Sbjct: 181 AVFEIVVAGRVIENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKV 240

Query: 230 LIKLQKD 236
           + + Q +
Sbjct: 241 ICEAQNE 247


>gi|18399822|ref|NP_566441.1| RRP45a (Ribonuclease PH45a); 3'-5'-exoribonuclease/ RNA binding
           [Arabidopsis thaliana]
 gi|79313209|ref|NP_001030684.1| RRP45a (Ribonuclease PH45a); 3'-5'-exoribonuclease/ RNA binding
           [Arabidopsis thaliana]
 gi|15795131|dbj|BAB02509.1| nucleolar autoantigen-like protein [Arabidopsis thaliana]
 gi|27765042|gb|AAO23642.1| At3g12990 [Arabidopsis thaliana]
 gi|110742714|dbj|BAE99268.1| hypothetical protein [Arabidopsis thaliana]
 gi|332641750|gb|AEE75271.1| ribonuclease PH45A [Arabidopsis thaliana]
 gi|332641751|gb|AEE75272.1| ribonuclease PH45A [Arabidopsis thaliana]
 gi|332641752|gb|AEE75273.1| ribonuclease PH45A [Arabidopsis thaliana]
          Length = 307

 Score = 88.6 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 91/262 (34%), Gaps = 33/262 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R++++         GS  V+ G TH++   T +  V  +      G  +
Sbjct: 27  LRVDGRGLYDYRKLTIKFG---KEYGSSQVQLGQTHVMAFVTAQL-VQPYKDRPSEGSFS 82

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQI 112
                 P +  +        G  G  + E+ R+I RALR    VD  +L          +
Sbjct: 83  IFTEFSPMADPS-----FEPGHPGESAVELGRIIDRALRESRAVDTESLCVLAGKLVWSV 137

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH-------------MEDCSNKFQLSQVLKG 159
            ID  ++   G    AA   A  AL    +              +     +  L  ++  
Sbjct: 138 RIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVIIHPPEEREPLPLIIHH 197

Query: 160 HVAAISCGMLCGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
              A + G        ++D  Y E++ +       +  +G I  +Q   E    +Q    
Sbjct: 198 LPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGDICAIQKPGEEGV-NQSVIL 256

Query: 218 AMLNLAKDRIADLIKLQKDVIS 239
             L LA  R +   K+ +D + 
Sbjct: 257 HCLRLASSRASATTKIIRDAVE 278


>gi|82752803|ref|XP_727434.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23483275|gb|EAA18999.1| similar to S. cerevisiae RRP45, putative [Plasmodium yoelii yoelii]
          Length = 391

 Score = 88.6 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 92/261 (35%), Gaps = 30/261 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR     R +S+         G+  V  G+T ++   T  E V  + +    G I 
Sbjct: 19  LRLDGRNFEDSRNVSI---YFLGDYGNVEVSIGNTKVVCKIT-SEIVKPYDKKPNEGIIK 74

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA-----LGSRQII-- 113
               +   +T N         +      EI+ +I R  ++   L+      +  +++   
Sbjct: 75  INLDVESFNTYN-----NDISKITDECLEIKNLIERIFKASNILNFESLCIIPYKKVWCL 129

Query: 114 -IDCDVIQADGGTRTAAITGAWVALHDC------------LQHMEDCSNKFQLSQVLKGH 160
            I+  VI+ DG    +    A+ AL               +   E+  N   LS      
Sbjct: 130 LINITVIENDGNLYDSCYLSAYSALLHFRNNNVNIDNTGNVIIDEEEVNYTSLSVHNSPI 189

Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +   +        ++D    E+  +    +  +  + +++ +         S D     +
Sbjct: 190 LTTFAYFNFEEICLIDPSLYEEEFMSSKLSIAINKNENLISILKPG-GLPISYDTILQGI 248

Query: 221 NLAKDRIADLIKLQKDVISNE 241
            LAK R+  ++K+ +D +  +
Sbjct: 249 ELAKKRVKSILKILEDALKED 269


>gi|322788559|gb|EFZ14187.1| hypothetical protein SINV_07329 [Solenopsis invicta]
          Length = 292

 Score = 88.6 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 85/268 (31%), Gaps = 40/268 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTKHG-- 57
           +R  GR + Q R + +  ++ K+A GS  ++ G+ T +L    +E   P   R  +    
Sbjct: 22  LRNDGRSKYQYRPLEIETKLMKHAHGSARLRVGNITDVLVGVKVEIDTPYAERPHEGKLD 81

Query: 58  -WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS----- 109
            ++       P         E   G     + EI  ++  A ++    DL  L       
Sbjct: 82  FFVDCSANATP-------AFEGKGG--DDLATEISNVLSIAYQTPNAFDLKQLCIIPYKK 132

Query: 110 -RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL----------- 157
             ++ +D  ++Q  G    A       AL++        +        +           
Sbjct: 133 CWKMYVDILILQCGGNLFDAVGAAVKAALYNTEIPRVITATLDGGEPDIQVSDDPYDCIK 192

Query: 158 ---KGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
                +   ++   +    ++D    E+S            +G +  V       +    
Sbjct: 193 LDVTNYPLVVTVCKIGDNFVIDPTSEEESCSTASILISAMPNGKVTSVVKLG-YGSLLPS 251

Query: 215 HFFAMLNLAKDRIADLIKLQKDVISNEV 242
               M+ + KD    +     + + N++
Sbjct: 252 TLIKMMKVGKD----ISLKLNEAVMNKL 275


>gi|297674272|ref|XP_002815156.1| PREDICTED: exosome complex exonuclease RRP45-like isoform 5 [Pongo
           abelii]
          Length = 392

 Score = 88.6 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFQQGTYLLVDPNEREECVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L    + N+
Sbjct: 253 IAGVKVAEITELILKALEND 272


>gi|86742236|ref|YP_482636.1| polynucleotide phosphorylase/polyadenylase [Frankia sp. CcI3]
 gi|123764534|sp|Q2J735|PNP_FRASC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|86569098|gb|ABD12907.1| Polyribonucleotide nucleotidyltransferase [Frankia sp. CcI3]
          Length = 729

 Score = 88.6 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 90/251 (35%), Gaps = 30/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR   ++R +S          GS L + G+T +L   T      +E+ V     + 
Sbjct: 337 VRIDGRSTTEIRALSAEVDYIPRVHGSALFERGETQIL-GVTTLAMLRMEQTVDTLNPDR 395

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              ++   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 396 TKRYMH-NYNFPPYSTGETGRVGSPKRREIGHG----ALAERALLPVLPSREEFPYAIRQ 450

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             + + ++G T   ++  + ++L +                 LK  VA I+ G++     
Sbjct: 451 VSEALGSNGSTSMGSVCASTLSLLNAGV-------------PLKAPVAGIAMGLIHADDS 497

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED+  D+D     T    +  +Q   +          A L  A+     +
Sbjct: 498 YVTLTDILGAEDAYGDMDFKVAGTRDF-VTALQLDTKLDGIPASVLAAALQQARGARLAI 556

Query: 231 IKLQKDVISNE 241
           + +  + I + 
Sbjct: 557 LDVMAEAIGSP 567



 Score = 82.4 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 84/256 (32%), Gaps = 49/256 (19%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R +      ++K A GS +   GDT +L+  T+    +E++  +             G +
Sbjct: 19  RTVRFETGRLAKQAAGSAVAYLGDTMVLSATTVSKQPKEQLDFFPLTVDVEERMYAAGRI 78

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+  +RE   GR    +    R+I R LR           Q++     +  D    
Sbjct: 79  P---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFAKGLRNEIQVVATVLALDPD---- 128

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                     L+D +      ++         G + A   G + G  I    + E +   
Sbjct: 129 ---------TLYDVVAINAASASTTLSGLPFTGPIGATRVGFVDGEWIAFPTHAELARAT 179

Query: 187 VDANFVMTDSGHIVE------------------VQGSAERATFSQDHFFAM-LNLAKDRI 227
            D       +G ++E                  V+  A  A    +   A  L  AK  I
Sbjct: 180 FDMVV----AGRVIEDGSDVAIMMVEAEATPGTVELLAHGAPAPTEEVVAAGLEAAKPAI 235

Query: 228 ADLIKLQKD--VISNE 241
            +L + Q +   ++ +
Sbjct: 236 RELCRAQSELAALAAK 251


>gi|21536581|gb|AAM60913.1| nucleolar autoantigen-like protein [Arabidopsis thaliana]
          Length = 307

 Score = 88.6 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 91/262 (34%), Gaps = 33/262 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R++++         GS  V+ G TH++   T +  V  +      G  +
Sbjct: 27  LRVDGRGLYDYRKLTIKFG---KEYGSSQVQLGQTHVMAFVTAQL-VQPYKDRPSEGSFS 82

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQI 112
                 P +  +        G  G  + E+ R+I RALR    VD  +L          +
Sbjct: 83  IFTEFSPMADPS-----FEPGHPGESAVELGRIIDRALRESRAVDTESLCVLAGKLVWSV 137

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH-------------MEDCSNKFQLSQVLKG 159
            ID  ++   G    AA   A  AL    +              +     +  L  ++  
Sbjct: 138 RIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVIIHPPEEREPLPLIIHH 197

Query: 160 HVAAISCGMLCGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
              A + G        ++D  Y E++ +       +  +G I  +Q   E    +Q    
Sbjct: 198 LPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGDICAIQKPGEEGV-NQSVIL 256

Query: 218 AMLNLAKDRIADLIKLQKDVIS 239
             L LA  R +   K+ +D + 
Sbjct: 257 HCLRLASSRASATTKIIRDAVE 278


>gi|302791331|ref|XP_002977432.1| hypothetical protein SELMODRAFT_106958 [Selaginella moellendorffii]
 gi|300154802|gb|EFJ21436.1| hypothetical protein SELMODRAFT_106958 [Selaginella moellendorffii]
          Length = 288

 Score = 88.6 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 85/262 (32%), Gaps = 38/262 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR     R +S+   +   A GS  V+ G T L+ +   E   P   R   +G I 
Sbjct: 20  LRSDGRGRYHFRNLSIQVGIIPQANGSARVRLGGTDLIVSVKAELGSPRSCR-PNYGSIE 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL-------RSVVDLSALGSR--- 110
                   +      R          + E+ R + R          + +DLS LG     
Sbjct: 79  VMVECSATAGPEFEGRGGED-----LNMELSRALQRCFVGGPSGAGAAIDLSTLGIVASK 133

Query: 111 ---QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA---- 163
              ++ +DC V+ +DG    A   GA  AL +        +            V      
Sbjct: 134 FCWELFVDCLVVNSDGNLLDALSIGA--ALSNTGIPSVKVTGNTASEDDADLEVGDNPDE 191

Query: 164 ------------ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
                       I+   +  + IVD    E+  +    +  +   G I+ +    +    
Sbjct: 192 FARLDASKVPLIITLTKIGRHYIVDATPEEEMGMSSAVSVAVNSKGLILGLTKRGDGG-L 250

Query: 212 SQDHFFAMLNLAKDRIADLIKL 233
                  M+++AK    DLI L
Sbjct: 251 DPSVVTDMISVAKHIARDLIVL 272


>gi|118466887|ref|YP_882853.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium avium
           104]
 gi|187610285|sp|A0QIW5|PNP_MYCA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|118168174|gb|ABK69071.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Mycobacterium avium 104]
          Length = 748

 Score = 88.2 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 88/251 (35%), Gaps = 17/251 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    V   A GS L + G+T +L   T  + V M  +    G  T
Sbjct: 337 FRIDGRGITDIRALSAEVAVVPRAHGSALFQRGETQIL-GVTTLDMVKMAQQIDSLGPET 395

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIII 114
                  Y   P STG   +  +   R+ G       +  RAL  V+  L       I  
Sbjct: 396 TKRYMHHYNFPPFSTGETGRVGSPKRREIGHG----ALAERALVPVLPSLEDFP-YAIRQ 450

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG-HVAAISCGMLCGY- 172
             + + ++G T   ++  + +AL +    ++       +  V     V A          
Sbjct: 451 VSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDIEVEAGDGTKSLERR 510

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED+  D+D     T    +  +Q   +            L+ AKD    +
Sbjct: 511 FVTLTDILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALSQAKDARLTI 569

Query: 231 IKLQKDVISNE 241
           +++  + I   
Sbjct: 570 LEVMAEAIDEP 580



 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 55/188 (29%), Gaps = 34/188 (18%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  +RE   GR    +    R+I R LR           Q+++    +  +        
Sbjct: 78  GSFFRRE---GRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTILSLDPN-------- 126

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
                 L+D L      ++         G +  +   ++ G  +      +      D  
Sbjct: 127 -----DLYDVLAINAASASTQLGGLPFSGPIGGVRVALIDGTWVAFPTVEQLERAVFDMV 181

Query: 191 FVMTDSGH---------IVEVQGSAERATF--------SQDHFFAMLNLAKDRIADLIKL 233
                            +VE + ++             ++      L  AK  I  L   
Sbjct: 182 VAGRKVDGADGPDVAIMMVEAEATSNVIELIDGGAQAPTETVVAQGLEAAKPFIEVLCTA 241

Query: 234 QKDVISNE 241
           Q++ ++++
Sbjct: 242 QQE-LADK 248


>gi|261839934|gb|ACX99699.1| polynucleotide phosphorylase [Helicobacter pylori 52]
          Length = 688

 Score = 88.2 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 86/249 (34%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------------TLEEKVP 48
           +R   R   ++R I +   +   A  S L   G T  L               +LE K P
Sbjct: 313 IRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGATSRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQNHAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK    
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEVLYQALLQAKKARE 529

Query: 229 DLIKLQKDV 237
            ++K+    
Sbjct: 530 HILKIMHGA 538



 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 76/218 (34%), Gaps = 30/218 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S + + G T +L +  +E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLMYRLGKTIILASVCVERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
              L     +    +        +K  V+A     +    I++      +   +D     
Sbjct: 122 ---LQVSALNAASAALFLAHIAPIK-SVSACRIARVDNEFIINPSANLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEVQGSAER-ATFSQDHFFAMLNLAKDRIAD 229
           T +S +++E++   ++     +      L LA+  + +
Sbjct: 178 TKESLNMIEMRSLGQKLNALEEPLMLKALELAQKSLKE 215


>gi|149698257|ref|XP_001503169.1| PREDICTED: similar to Exosome component 9 [Equus caballus]
          Length = 440

 Score = 88.2 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 95/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIKISFG-TDY--GCCVVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       ++       
Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVLAMNKHREICTIQSSG-GIMLLKEQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L +  + N+
Sbjct: 253 IAGVKVAEITELIQKALEND 272


>gi|145344077|ref|XP_001416565.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576791|gb|ABO94858.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 823

 Score = 88.2 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 81/234 (34%), Gaps = 10/234 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT----KHG 57
           R  GR  + +R I+    +     GS L   G+T  +  ATL        ++     +  
Sbjct: 378 RQDGRTTSMIRPIACEAGILPRTHGSSLFTRGETQAIGVATLGGSQDAQRQDDVEAGEDK 437

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +    S R+ G       +  RAL  ++           ++  
Sbjct: 438 RFMLHYFFPPSSVGETGRTGGASRREIGHG----NLAERALMPILPSEEDFPFVCKLEST 493

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A +    +AL D    ++       +  +L G  AA     L    + D+
Sbjct: 494 ITESNGSSSMATVCAGTLALLDAGVPIKRKVAGIAMGLIL-GSEAAGGGDELEPIVLTDI 552

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
              ED+  D+D        G I   Q   +    + D     L  A+  +  ++
Sbjct: 553 LGSEDALGDMDFKVAGDKDG-ITAFQMDIKVEGITIDVMKTALEEAQKGLVHIL 605



 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 69/229 (30%), Gaps = 28/229 (12%)

Query: 13  EISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           E+ L        A G+     G+T L  TA    +      +     +T  Y     S  
Sbjct: 79  EVRLETGKIGLQANGAVFASEGETVLYNTACASRECTG---DGSFVPLTVNYA-ERFSAA 134

Query: 72  NRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            R          G R  E    R++ R +R ++        Q++       A+  T    
Sbjct: 135 GRTSGGYKKRDGGLRENETLKARLVDRPIRPMMYKGWGYETQVLQWLMSFDAERST---- 190

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--YPIVDLDYGEDSTIDV 187
                    D L      +        LK  V  +  G++ G   P+V+    +     +
Sbjct: 191 ---------DALAITAASAALAVSDIPLKKPVVGVRVGLMPGSDEPVVNPTSEQMKQSRL 241

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           D     TD   ++ ++G  +    + D     +         + K  K+
Sbjct: 242 DLVLAGTDEA-VLMIEGFCD--FLTTDEMLRAIE---KGQEAVAKACKE 284


>gi|325115026|emb|CBZ50582.1| putative 3' exoribonuclease [Neospora caninum Liverpool]
          Length = 214

 Score = 88.2 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 63/189 (33%), Gaps = 26/189 (13%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           MR + L       A GS  V  G T L               +   G I  E+   P +T
Sbjct: 1   MRTMCLQTHSLAGATGSAFVSVGKTKLNCAVYGPRPNTK-AASQDRGSINLEFKYAPFAT 59

Query: 71  GNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
                     G    R S  +  ++ +A+ +VV L       I +   V++ DGG  +AA
Sbjct: 60  -------TSKGACNERDSAHLVTLLHQAVNAVVRLDLYRKSTIAVSVLVLEDDGGVISAA 112

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YPIVDLDYGE---- 181
           +T   +AL D    M D                A++     G      ++D D  E    
Sbjct: 113 LTCIGLALADAGIEMLDVLTGASG--------CAVALEQPDGPPRICVLLDPDADERRAF 164

Query: 182 -DSTIDVDA 189
            D    VD 
Sbjct: 165 ADKCTVVDL 173


>gi|114649403|ref|XP_001147354.1| PREDICTED: exosome component 8 isoform 2 [Pan troglodytes]
          Length = 210

 Score = 88.2 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 23/186 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P        G++  
Sbjct: 23  RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-TDAPDKGYVVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL---GSRQIII-D 115
              + P  +         SG  G  +Q   + I   +    ++    L     + + +  
Sbjct: 82  NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAI 164
           CD+  +  DG    A       AL +             + + + K +    ++ H  A 
Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVAT 196

Query: 165 SCGMLC 170
           S  +  
Sbjct: 197 SFAVFD 202


>gi|297293310|ref|XP_001101063.2| PREDICTED: exosome complex exonuclease RRP45 [Macaca mulatta]
          Length = 432

 Score = 88.2 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L    + N+
Sbjct: 253 IAGVKVAEITELILKALEND 272


>gi|283782720|ref|YP_003373474.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Gardnerella vaginalis 409-05]
 gi|298253113|ref|ZP_06976905.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis
           5-1]
 gi|283441010|gb|ADB13476.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Gardnerella vaginalis 409-05]
 gi|297532508|gb|EFH71394.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis
           5-1]
          Length = 926

 Score = 88.2 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 92/251 (36%), Gaps = 34/251 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNTK 55
           R+ GR    +R +S    V     GS L + G+T +L   T      +E++V   +   +
Sbjct: 346 RIDGRGLRDIRTLSAEVDVVPRVHGSALFQRGETQIL-GVTTLNMLKMEQQVDA-LSGPQ 403

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y M P STG   +  +   R+ G       +  +AL  V+         I   
Sbjct: 404 TKRYMHNYEMPPYSTGETGRVGSPKRREIGHG----ALAEKALVPVLPGREEFPYAIRQV 459

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            + I ++G T   ++  + ++L                   LK  VA I+ G++ G    
Sbjct: 460 SEAIGSNGSTSMGSVCASTLSLLAAGV-------------PLKAPVAGIAMGLVSGDVDG 506

Query: 174 ------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                 + D+   ED+  D+D     T    I  +Q   +      D   A L  A +  
Sbjct: 507 KHIFKTLTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAAALQQAHEAR 565

Query: 228 ADLIKLQKDVI 238
           A ++++  + I
Sbjct: 566 ATILEVINECI 576



 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 75/247 (30%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   D+ +L      ++ +E    +             G
Sbjct: 21  RTLRFETGRLAQQADGAVAAYLDD-DSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     I  D  
Sbjct: 80  KIP---GSFFRRE---GRPSNEATLACRIIDRPLRPLFPHTLRNEVQVVETILAINPDDA 133

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  +                     +G V+ +   ++ G  +    + E   
Sbjct: 134 YDVIALNAASAS-------------TMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER 180

Query: 185 I----DVDANFVMTDSGHIVEVQGSAERATFS---------QDHFFAM--LNLAKDRIAD 229
                 V    +      I  ++  A +  ++          D       L  AK  I  
Sbjct: 181 AVFEIVVAGRVIENGDVAIAMIEAGAGKNAWNLIYNDGQTKPDEQVVAGGLEAAKPFIKV 240

Query: 230 LIKLQKD 236
           +   Q +
Sbjct: 241 ICDAQNE 247


>gi|194891452|ref|XP_001977495.1| GG18224 [Drosophila erecta]
 gi|190649144|gb|EDV46422.1| GG18224 [Drosophila erecta]
          Length = 415

 Score = 88.2 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 86/259 (33%), Gaps = 32/259 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R  GR+ N+ R++ LT      ++ G+  V  GDT +LT  T +   P   R    G   
Sbjct: 29  RFDGRRSNECRDVELTFG----SDWGTVAVSMGDTKVLTRVTCDMGTPATSR-PNEGKFQ 83

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSALGSRQ------I 112
               +   +  + ++          RS  +  ++ R  RS   VDL +L          I
Sbjct: 84  LNVNLAGVAFLDELQTT-----HDQRSLTLNSLLERTFRSSRSVDLESLCVAAEHHVWCI 138

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHD--------CLQHMEDCSNKFQLSQVL--KGHVA 162
            +D +V+  DG    A+      AL              +   + K +    L    +  
Sbjct: 139 RVDVNVLNHDGNLYDASTIATLAALMHFRRPDVTFADDKLRIYTEKERDFIPLLFLHYPV 198

Query: 163 AISCGMLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +++  +      PIVD    E++  D            +  +       T  +       
Sbjct: 199 SVTYCIYKSSWQPIVDPTLLEENAADSVIVLSFNSYQELCSLNAGGTAPTNVRTIMQCAR 258

Query: 221 NLAKDRIADLIKLQKDVIS 239
           N A      L+   +  +S
Sbjct: 259 NAATR-CKSLVDFIRKALS 276


>gi|261338333|ref|ZP_05966217.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium gallicum
           DSM 20093]
 gi|270277006|gb|EFA22860.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium gallicum
           DSM 20093]
          Length = 895

 Score = 88.2 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 88/249 (35%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R +S    +     GS L + G+T +L   TL     E+    +      
Sbjct: 346 RIDGRGLRDIRTLSAEVGIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPTSK 405

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P STG   +  +   R+ G       +  +A+  V+         I    +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHG----ALAEKAIVPVLPSREEFPYAIRQVSE 461

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            I ++G T   ++  + ++L D                 LK  VA I+ G++ G      
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLDAGV-------------PLKAPVAGIAMGLVSGDVDGKH 508

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    I  +Q   +      D     L  A +    
Sbjct: 509 IFKTLTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADVLAGALKQAHEARTT 567

Query: 230 LIKLQKDVI 238
           ++++  + I
Sbjct: 568 ILEVINECI 576



 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 73/247 (29%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   DT +L      ++ +E    +             G
Sbjct: 21  RTLRFETGRLAQQADGAVAAYLDD-DTMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     +  D  
Sbjct: 80  KIP---GSFFRRE---GRPSTEAILACRIIDRPLRPLFPHTLRNEVQVVETILAVNPDDA 133

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  +                      G V+ +   ++ G  +    + E   
Sbjct: 134 YDVVALNAASAS-------------TLISGLPFGGPVSGVRLALIDGQWVAFPRWSERER 180

Query: 185 I----DVDANFVMTDSGHIVEVQGSA---------ERATFSQDH--FFAMLNLAKDRIAD 229
                 V    V      I  ++  A         +      D       L  AK  I  
Sbjct: 181 AVFEIVVAGRVVDNGDVAIAMIEAGAGKNAWKLIYDEGHMKPDEEVVAGGLEAAKPFIKV 240

Query: 230 LIKLQKD 236
           + + Q +
Sbjct: 241 ICEAQDE 247


>gi|41408989|ref|NP_961825.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium avium
           subsp. paratuberculosis K-10]
 gi|81413535|sp|Q73VX0|PNP_MYCPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|41397348|gb|AAS05208.1| GpsI [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 757

 Score = 88.2 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 88/251 (35%), Gaps = 17/251 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    V   A GS L + G+T +L   T  + V M  +    G  T
Sbjct: 346 FRIDGRGITDIRALSAEVAVVPRAHGSALFQRGETQIL-GVTTLDMVKMAQQIDSLGPET 404

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIII 114
                  Y   P STG   +  +   R+ G       +  RAL  V+  L       I  
Sbjct: 405 TKRYMHHYNFPPFSTGETGRVGSPKRREIGHG----ALAERALVPVLPSLEDFP-YAIRQ 459

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG-HVAAISCGMLCGY- 172
             + + ++G T   ++  + +AL +    ++       +  V     V A          
Sbjct: 460 VSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDIEVEAGDGTKSLERR 519

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED+  D+D     T    +  +Q   +            L+ AKD    +
Sbjct: 520 FVTLTDILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALSQAKDARLTI 578

Query: 231 IKLQKDVISNE 241
           +++  + I   
Sbjct: 579 LEVMAEAIDEP 589



 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 55/188 (29%), Gaps = 34/188 (18%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  +RE   GR    +    R+I R LR           Q+++    +  +        
Sbjct: 87  GSFFRRE---GRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTILSLDPN-------- 135

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
                 L+D L      ++         G +  +   ++ G  +      +      D  
Sbjct: 136 -----DLYDVLAINAASASTQLGGLPFSGPIGGVRVALIDGTWVAFPTVEQLERAVFDMV 190

Query: 191 FVMTDSGH---------IVEVQGSAERATF--------SQDHFFAMLNLAKDRIADLIKL 233
                            +VE + ++             ++      L  AK  I  L   
Sbjct: 191 VAGRKVDGADGPDVAIMMVEAEATSNVIELIDGGAQAPTETVVAQGLEAAKPFIEVLCTA 250

Query: 234 QKDVISNE 241
           Q++ ++++
Sbjct: 251 QQE-LADK 257


>gi|297674268|ref|XP_002815154.1| PREDICTED: exosome complex exonuclease RRP45-like isoform 3 [Pongo
           abelii]
 gi|297674270|ref|XP_002815155.1| PREDICTED: exosome complex exonuclease RRP45-like isoform 4 [Pongo
           abelii]
          Length = 456

 Score = 88.2 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFQQGTYLLVDPNEREECVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L    + N+
Sbjct: 253 IAGVKVAEITELILKALEND 272


>gi|307176033|gb|EFN65792.1| Exosome complex exonuclease RRP42 [Camponotus floridanus]
          Length = 426

 Score = 88.2 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 89/265 (33%), Gaps = 32/265 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTKHGWI 59
           +R  GR   Q R I +  R+  +A GS  ++ G+ T +L    LE   P +      G +
Sbjct: 156 LRNDGRSRCQYRSIEIETRLMPHAHGSARLRIGNITDVLVGVKLEIDTP-YAEKPDEGKL 214

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQ 111
                    +T      E   G     + EI  ++  A ++  V DL  L         +
Sbjct: 215 DFFVDCSANATPAF---EGKGG--DDLATEISNVLSMAYQTPDVFDLRQLCIIPHKKCWK 269

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV--------------- 156
           + +D  ++Q  G    A       AL++     +  +      +                
Sbjct: 270 MYVDILILQCGGNLFDAVGAAVKAALYNTEIP-KVIAATLDGGEPDIQVSDDPYDCIKLD 328

Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
           +  + + ++   +    ++D    E+S   V+    +  +G +  +       +      
Sbjct: 329 ITTYPSIVTVCKIGDNFVIDPTLEEESCSAVNIIMSVMPNGKVTSMVKQG-YGSLLPTTL 387

Query: 217 FAMLNLAKDRIADLIKLQKDVISNE 241
             ML + KD    L +  K  +  E
Sbjct: 388 IKMLEVGKDIGLKLNEALKKTLEEE 412


>gi|307105973|gb|EFN54220.1| hypothetical protein CHLNCDRAFT_36088 [Chlorella variabilis]
          Length = 852

 Score = 88.2 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 79/226 (34%), Gaps = 27/226 (11%)

Query: 16  LTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMW-IRNTKHGWITAEYGMLPRSTGNR 73
                    A GSCLV+ G+T +L  AT +  +P W  R  +      +Y     + G R
Sbjct: 134 FETGKLARLANGSCLVQCGNTTVLAAATCQ--LPPWSRREAQSLQFEVDYREKLYAVG-R 190

Query: 74  VKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG--TRTAA 129
           +           +  E+   R IGRALR +            +   V+ ADGG      A
Sbjct: 191 IPGTYNKREGTAKEHEVLAGRRIGRALRPLFPKGFALDAA--VFASVLSADGGCDPEVMA 248

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYGEDSTIDVD 188
           ++ A  AL                     G VAA    ML  G  +V     +     +D
Sbjct: 249 VSSASAAL-------------LCSDMPWAGPVAAARVAMLHDGQLVVGPSVEQQEAAVLD 295

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
                T  G +  ++   E+    +  F   L+LA      LIK Q
Sbjct: 296 LLVAATADGRVTMLEADGEQVP--ETQFLNALHLAVSTTQQLIKPQ 339



 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 81/251 (32%), Gaps = 28/251 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-----NTKH 56
           R  GR    +R +           GS L   G+T  L T T+  +               
Sbjct: 449 RCDGRGAIDVRPVHCEVDSVPVVHGSALFSRGETQSLCTVTVGRRQEQQKMESLLGGEGV 508

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIID 115
             +   Y   P + G      +   R+ G       +  RAL  V+ D+ A     + ++
Sbjct: 509 KRLFVNYSFPPFAVGETS--TSGMRREMGH----SDLAERALLPVIPDMQAFP-FSLRLN 561

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            + + + G +  AA+ G  +AL D    ++               V  ++     G   +
Sbjct: 562 AETLASAGSSSMAAVCGGALALADAGVPLKALVAGVT--------VGLLTESSWGGELRL 613

Query: 176 DLDYG----EDSTIDVDANFVMTDSGHIVEVQGSAE-RATFSQDHFFAMLNLAKDRIADL 230
            L       ED   D+D     T  G I   Q   + +     +     + LA    A L
Sbjct: 614 -LSSVALGMEDQLGDMDLKVAGTSQG-ITACQLDVKLQGGVPLEILNEAIGLAARGRAKL 671

Query: 231 IKLQKDVISNE 241
           + + +  +  +
Sbjct: 672 LGIMEKALPEK 682


>gi|111225112|ref|YP_715906.1| polynucleotide phosphorylase/polyadenylase [Frankia alni ACN14a]
 gi|123142666|sp|Q0RDT1|PNP_FRAAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|111152644|emb|CAJ64385.1| polynucleotide phosphorylase, has polyadenylase activity [Frankia
           alni ACN14a]
          Length = 729

 Score = 88.2 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 86/247 (34%), Gaps = 22/247 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR   ++RE+S          GS L + G+T +L   T      +E+ V     + 
Sbjct: 338 VRIDGRSTTEIRELSAEVDYIPRVHGSALFERGETQIL-GVTTLAMLRMEQTVDTLNPDR 396

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              ++   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 397 TKRYMH-NYNFPPYSTGETGRVGSPKRREIGHG----ALAERALLPVLPSREEFPYAIRQ 451

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             + + ++G T   ++  + ++L +    ++       +  V                 +
Sbjct: 452 VSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLVHADDAYVT---------L 502

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED+  D+D     T    +  +Q   +          + L  A+     ++ + 
Sbjct: 503 TDILGAEDAYGDMDFKVAGTRDF-VTALQLDTKLDGIPASVLASALQQARGARLAILDVM 561

Query: 235 KDVISNE 241
            + I + 
Sbjct: 562 AEAIGSP 568



 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 80/245 (32%), Gaps = 39/245 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R +      +++ A GS +   GDT +L+  T+    +E++  +             G +
Sbjct: 19  RTVRFETGRLARQAAGSAVAYLGDTMVLSATTVSKQPKEQLDFFPLTVDVEERMYAAGRI 78

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+  +RE   GR    +    R+I R LR           Q++     +  D    
Sbjct: 79  P---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFAKGLRNEIQVVATVLALDPD---- 128

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
                     L+D +      ++         G + A   G + G  I    + E +   
Sbjct: 129 ---------TLYDVVAINAASASTTLSGLPFTGPIGATRVGYVDGEWIAFPTHAELARAT 179

Query: 187 VDANFVM-----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
            D               I+ V+  A   T           +++   A L  AK  I +L 
Sbjct: 180 FDMVVAGRVVEDGSDVAIMMVEAEATPGTVELIAGGAPAPTEEVVAAGLEAAKPAIRELC 239

Query: 232 KLQKD 236
           + Q +
Sbjct: 240 RAQSE 244


>gi|259507481|ref|ZP_05750381.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Corynebacterium efficiens
           YS-314]
 gi|259164969|gb|EEW49523.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Corynebacterium efficiens
           YS-314]
          Length = 766

 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 89/242 (36%), Gaps = 14/242 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
            R+ GR  + +R++ +   +   A GS L + G+T +L   TL+    E+    +     
Sbjct: 380 FRIDGRGVSDIRDLGVEVELIPRAHGSSLFERGETQILGVTTLDMLKMEQHIDSLAPVDT 439

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RA+  V+         I    
Sbjct: 440 KRYMHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERAVLPVIPSREDFPYAIRQVS 495

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  + ++L++    ++       +     G V+    G      + D
Sbjct: 496 EALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAM-----GLVSDEVDGKTEYVALTD 550

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    I  +Q   +            L  A+D    +++   +
Sbjct: 551 ILGAEDAFGDMDFKVAGTAEF-ITALQLDTKLDGIPSKVLADALEQARDARLAILETMAE 609

Query: 237 VI 238
           VI
Sbjct: 610 VI 611



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 83/252 (32%), Gaps = 29/252 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      +++ A+G+      D T LL T T      E +  +             G 
Sbjct: 43  RTIRFETGQLARQADGAVTTYLDDETMLLATTTASNQPREGLDFFPLTVDVEERMYAAGR 102

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q+II    +  +   
Sbjct: 103 IP---GSFFRRE---GRPSTEAILACRLIDRPLRPTFVKGLRNEVQVIITVMSVSPEDSY 156

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQV-----LKGHVAAISCGMLCGYPIVDL--- 177
              AI GA  A       +       +++ +      +G   A          + +L   
Sbjct: 157 DVVAINGASAATRISGLPVSGAVGGVRMALIADENHPEGQWVAFPTAEQQKASVFELVVA 216

Query: 178 -DYGEDSTID---VDANFVMTDSG---HIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
               E    +    D   +M ++G   ++VE       A  ++      L  AK  I  L
Sbjct: 217 GRLVERKRGNKTFSDVAVMMVEAGASENVVERIKEGAPAP-TEKTVAEGLEAAKPFIDLL 275

Query: 231 IKLQKDVISNEV 242
            + Q + ++  V
Sbjct: 276 CRAQ-EGLAQRV 286


>gi|326382957|ref|ZP_08204647.1| polynucleotide phosphorylase/polyadenylase [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326198547|gb|EGD55731.1| polynucleotide phosphorylase/polyadenylase [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 750

 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 86/246 (34%), Gaps = 12/246 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    +   A GS L + G+T ++   T  + V M  +    G  T
Sbjct: 350 FRIDGRGITDIRSLSAEVGIIPRAHGSALFERGETQIM-GVTTLDMVKMAQQIDSLGPET 408

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +      Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 409 SKRYMHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPSVEEFPYAIRQV 464

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            + + ++G T   ++  + ++L +    ++       +  ++   V            + 
Sbjct: 465 SEALGSNGSTSMGSVCASTISLLNAGVPLKAPVAGIAMG-LVSDEVTIDGKTETRYVALT 523

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED+  D+D     T    +  +Q   +            L+ AK     ++ +  
Sbjct: 524 DILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSKVLAGALSQAKQARLTILDVLA 582

Query: 236 DVISNE 241
           + I   
Sbjct: 583 EAIDEP 588



 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 74/240 (30%), Gaps = 24/240 (10%)

Query: 12  REISLTRRVSK-YAEGSC--LVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYG 64
           R I+         A GS    +  G T +L+T T     +E    +             G
Sbjct: 27  RTITFETGRLALQAAGSVVAYLDEG-TMILSTTTASKNPKEHFDFFPLTVDVEERMYAAG 85

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR           QI+     +     
Sbjct: 86  RIP---GSFFRRE---GRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVETVLSLDPKDL 139

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK-----GHVAAISCGMLCGYPIVDLDY 179
               AI  A  +               +++ +       G   A          + D+  
Sbjct: 140 YDVVAINAASASTQIAGLPFSGPVGGVRVALIPTEENKAGQWVAFPTVEQLEGAVFDMVV 199

Query: 180 GEDSTIDVDANFVMTDS---GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                +D D   +M ++    +++ +      A  S+      L  AK  IA L + QK 
Sbjct: 200 A-GRLVDGDVAIMMVEAEATDNVLALIADGATAP-SEAVVAEGLEAAKPFIATLCEAQKQ 257


>gi|302670339|ref|YP_003830299.1| polyribonucleotide nucleotidyltransferase [Butyrivibrio
           proteoclasticus B316]
 gi|302394812|gb|ADL33717.1| polyribonucleotide nucleotidyltransferase [Butyrivibrio
           proteoclasticus B316]
          Length = 696

 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 75/230 (32%), Gaps = 29/230 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-----KVPMWIRNTKH 56
           R  GR+  Q+R +S    +     GS +   G T +    TL       KV         
Sbjct: 312 RPDGREIKQIRPLSAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEAQKVEGLDSFAAD 371

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y     S G       VS   G R      +  RAL  V+         I    
Sbjct: 372 KRYVHQYNFPAYSVGETK----VSRGPGRREIGHGALAERALLPVLPSVEEFPYAIRAVS 427

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171
           +  +++G T  A+   + ++L                   +K  VA ISCG++ G     
Sbjct: 428 ETFESNGSTSMASTCASCMSLMAAGV-------------PIKKMVAGISCGLVTGDTDDD 474

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
              + D+   ED   D+D     T  G I  +Q   +    ++      +
Sbjct: 475 FVVLTDIQGLEDFFGDMDFKVTGTKDG-ITAIQMDIKIHGLTKPIVETAI 523



 Score = 85.9 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 77/226 (34%), Gaps = 27/226 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    V K A G   +++GDT +L TAT      + +  +  + ++G      G  
Sbjct: 12  RTLKVEIGKVGKQANGCAFMQYGDTTVLCTATASAKPRDGIDFFPLSVEYGEKFYAVGKF 71

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    +    R+I R +R +          I      +       
Sbjct: 72  P---GGYNKRE---GKPSENAILTSRVIDRPMRPLFPKDYRNDVTIETMVMAVDPQCRPE 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA V++                     G  A    GM+ G  IV+    + +T D
Sbjct: 126 LVAMLGASVSVS-------------ISDIPFDGPCAMTQIGMIDGELIVNPTQEQWNTGD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +           ++ ++  A      ++     +  A D    +I+
Sbjct: 173 LKLTVASVGQ-KVIMIEAGANEIP--EEKMKEAIYKAHDVNLQIIE 215


>gi|25028424|ref|NP_738478.1| polynucleotide phosphorylase/polyadenylase [Corynebacterium
           efficiens YS-314]
 gi|23493709|dbj|BAC18678.1| putative guanosine pentaphosphate synthetase and polyribonucleotide
           nucleotidyltransferase [Corynebacterium efficiens
           YS-314]
          Length = 769

 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 89/242 (36%), Gaps = 14/242 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
            R+ GR  + +R++ +   +   A GS L + G+T +L   TL+    E+    +     
Sbjct: 383 FRIDGRGVSDIRDLGVEVELIPRAHGSSLFERGETQILGVTTLDMLKMEQHIDSLAPVDT 442

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RA+  V+         I    
Sbjct: 443 KRYMHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERAVLPVIPSREDFPYAIRQVS 498

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  + ++L++    ++       +     G V+    G      + D
Sbjct: 499 EALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAM-----GLVSDEVDGKTEYVALTD 553

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    I  +Q   +            L  A+D    +++   +
Sbjct: 554 ILGAEDAFGDMDFKVAGTAEF-ITALQLDTKLDGIPSKVLADALEQARDARLAILETMAE 612

Query: 237 VI 238
           VI
Sbjct: 613 VI 614



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 83/252 (32%), Gaps = 29/252 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      +++ A+G+      D T LL T T      E +  +             G 
Sbjct: 46  RTIRFETGQLARQADGAVTTYLDDETMLLATTTASNQPREGLDFFPLTVDVEERMYAAGR 105

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q+II    +  +   
Sbjct: 106 IP---GSFFRRE---GRPSTEAILACRLIDRPLRPTFVKGLRNEVQVIITVMSVSPEDSY 159

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQV-----LKGHVAAISCGMLCGYPIVDL--- 177
              AI GA  A       +       +++ +      +G   A          + +L   
Sbjct: 160 DVVAINGASAATRISGLPVSGAVGGVRMALIADENHPEGQWVAFPTAEQQKASVFELVVA 219

Query: 178 -DYGEDSTID---VDANFVMTDSG---HIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
               E    +    D   +M ++G   ++VE       A  ++      L  AK  I  L
Sbjct: 220 GRLVERKRGNKTFSDVAVMMVEAGASENVVERIKEGAPAP-TEKTVAEGLEAAKPFIDLL 278

Query: 231 IKLQKDVISNEV 242
            + Q + ++  V
Sbjct: 279 CRAQ-EGLAQRV 289


>gi|256824776|ref|YP_003148736.1| polynucleotide phosphorylase/polyadenylase [Kytococcus sedentarius
           DSM 20547]
 gi|256688169|gb|ACV05971.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Kytococcus sedentarius DSM 20547]
          Length = 842

 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 86/243 (35%), Gaps = 16/243 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR    +R +S   +      GS + + G+T ++   T    + M  +      +T
Sbjct: 352 VRIDGRGPKDIRALSAEVQALPRVHGSAIFERGETQIM-GVTTLNMLRMEQQLDGLNPVT 410

Query: 61  -----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y   P STG   +  +   R+ G       +  RA+  V+         I   
Sbjct: 411 RKRYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERAILPVLPSREEFPYAIRQV 466

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            + + ++G T   ++  + ++L +    ++       +     G V+A   G      + 
Sbjct: 467 SEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAM-----GLVSAQVDGGTRYQALT 521

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED+  D+D     T    +  +Q   +      +     L  A++    ++ +  
Sbjct: 522 DILGAEDAFGDMDFKVAGTKDF-VTAIQLDTKLDGIPAEELSKALTQAREARLHILDVMS 580

Query: 236 DVI 238
             I
Sbjct: 581 QAI 583



 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 81/248 (32%), Gaps = 43/248 (17%)

Query: 12  REISLTRR-VSKYAEGSC---LVKFGD-----THLLTTAT-LEEKVPMWIRNTKHGWITA 61
           R I      +++ A GS    LV+  D     T +L+T T  +E    +        +  
Sbjct: 21  RTIRFETGRLAQQAAGSVAAYLVE--DDIDDATMVLSTTTAGKEPKDHFDFFPLTVDVEE 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
                 R  G+  +RE   GR G  +    R+I R LR           Q+++       
Sbjct: 79  RMYAAGRIPGSFFRRE---GRPGTDAILTCRLIDRPLRPTFTKGLRNEVQVVVTVLAHHP 135

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           D      AI  A  +                      G +  +   ++ G  +   ++ +
Sbjct: 136 DHQYDVLAINAASASTQ-------------ISGLPFSGPIGGVRISLIDGQWVAFPNFSD 182

Query: 182 DSTIDVDANFV--MTDSGH--IVEVQGSAERATF-----------SQDHFFAMLNLAKDR 226
            +    D      +TD G   I+ V+  +  +T+           +++     L  +K  
Sbjct: 183 IARSTFDMVVAGRLTDDGDVAIMMVEAESTESTWALVNDEGKTAPTEEVVSQGLEASKVF 242

Query: 227 IADLIKLQ 234
           I  L + Q
Sbjct: 243 IRALCEAQ 250


>gi|108799067|ref|YP_639264.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium sp. MCS]
 gi|119868182|ref|YP_938134.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium sp. KMS]
 gi|126434670|ref|YP_001070361.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium sp. JLS]
 gi|123178942|sp|Q1BA76|PNP_MYCSS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610288|sp|A3PY93|PNP_MYCSJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|187610289|sp|A1UET6|PNP_MYCSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|108769486|gb|ABG08208.1| Polyribonucleotide nucleotidyltransferase [Mycobacterium sp. MCS]
 gi|119694271|gb|ABL91344.1| Polyribonucleotide nucleotidyltransferase [Mycobacterium sp. KMS]
 gi|126234470|gb|ABN97870.1| Polyribonucleotide nucleotidyltransferase [Mycobacterium sp. JLS]
          Length = 759

 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 12/243 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    +   A GS L + G+T +L   T  + V M  +    G  T
Sbjct: 342 FRIDGRGVTDIRALSAEVAIVPRAHGSALFERGETQIL-GVTTLDMVKMAQQIDSLGPET 400

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +      Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 401 SKRYMHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERALMPVLPSVEEFPYAIRQV 456

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            + + ++G T   ++  + ++L +    ++       +  ++   V            + 
Sbjct: 457 SEALSSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMG-LVSDDVEVDGKTERRFVTLT 515

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED+  D+D     T    +  +Q   +            L  AKD    ++++  
Sbjct: 516 DILGAEDAFGDMDFKCAGTKDF-VTALQLDTKLDGIPSQVLAGALAQAKDARITILEVMA 574

Query: 236 DVI 238
           + I
Sbjct: 575 EAI 577



 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 52/180 (28%), Gaps = 31/180 (17%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  +RE   GR    +    R+I R LR           Q+++    +           
Sbjct: 87  GSFFRRE---GRPSTDAILTCRLIDRPLRPTFVSGLRNEIQVVVTVMSLD---------- 133

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
                 L+D +      ++         G V  +   ++ G  +      +      D  
Sbjct: 134 ---PKDLYDVVAINAASASTQIAGLPFSGPVGGVRVALIDGTWVAFPTVEQLERAVFDMV 190

Query: 191 FVMTD--------------SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                              +  +VE+     +A  ++      L  AK  I  L + Q++
Sbjct: 191 VAGRKTADDVAIMMVEAEATDKVVELVAGGAQAP-TEAVVAEGLEAAKPFIKVLCEAQQE 249


>gi|109948073|ref|YP_665301.1| polynucleotide phosphorylase/polyadenylase [Helicobacter
           acinonychis str. Sheeba]
 gi|123362511|sp|Q17VM4|PNP_HELAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|109715294|emb|CAK00302.1| polyribonucleotide nucleotidyltransferase [Helicobacter acinonychis
           str. Sheeba]
          Length = 688

 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 88/249 (35%), Gaps = 35/249 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA------------TLEEKVP 48
           +R   R   ++R IS+   +   A  S L   G T  L               +LE K P
Sbjct: 313 IRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGTDNDAQTHESLEHKAP 372

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
           +  R          Y   P   G      A S R+ G       +  RAL + +      
Sbjct: 373 IKER------FMFHYNFPPFCVGEASSIGATSRRELGHG----NLAKRALETSIKNK--- 419

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
            + I +  ++++++G +  A++    +AL+     + D      +  V +G   AI    
Sbjct: 420 DQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSEGQDYAI---- 475

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D        G I  +Q   + +    +  +  L  AK    
Sbjct: 476 -----LSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLEILYQTLLQAKRVRE 529

Query: 229 DLIKLQKDV 237
            ++K+  + 
Sbjct: 530 HILKIMHEA 538



 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 77/218 (35%), Gaps = 30/218 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S L + G T +L +  +E +    + +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLLYRLGKTIILASVCVERE----LVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
              L     +    +     +   K  V+A     +    I++      +   +D     
Sbjct: 122 ---LQVSALNAASAALFLAHAAPFK-SVSACRIARIDNEFIINPSTSLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEVQGSAER-ATFSQDHFFAMLNLAKDRIAD 229
           T +S +++E++   ++     +      L LA+  + +
Sbjct: 178 TKESLNMIEMRSLGQKLNALEEPLMLEALELAQKSLKE 215


>gi|297674264|ref|XP_002815152.1| PREDICTED: exosome complex exonuclease RRP45-like isoform 1 [Pongo
           abelii]
 gi|297674266|ref|XP_002815153.1| PREDICTED: exosome complex exonuclease RRP45-like isoform 2 [Pongo
           abelii]
          Length = 439

 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFQQGTYLLVDPNEREECVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L    + N+
Sbjct: 253 IAGVKVAEITELILKALEND 272


>gi|260834769|ref|XP_002612382.1| hypothetical protein BRAFLDRAFT_280121 [Branchiostoma floridae]
 gi|229297759|gb|EEN68391.1| hypothetical protein BRAFLDRAFT_280121 [Branchiostoma floridae]
          Length = 291

 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 78/266 (29%), Gaps = 35/266 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHG 57
           +R  GR     R + +   V     GS  ++ G+T +L     E   P            
Sbjct: 24  LRSDGRACEDYRHVQVETDVVSNTSGSARLRLGNTDILVGVKAEMGEPDPGRPKEGKLEF 83

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSAL---GSRQ- 111
           ++       P         E         + E+   + R    +S +DL+AL      Q 
Sbjct: 84  FVDCSANASP---------EFEGRGGEELAIEVSNALQRIFNSKSTLDLTALCIIPEGQC 134

Query: 112 --IIIDCDVIQADGGTRTAAITGAWVALHDCLQH--MEDCSNKFQLSQVLKGHVAAISCG 167
             + +D  V++  G    A       AL +      +    ++ Q    L      +   
Sbjct: 135 WVLFVDVLVLECGGNLFDAVSLAVKAALFNTRIPTVVVTADDEGQQEIELSDDPYDVKRL 194

Query: 168 MLCGYP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
            +   P            +VD  + E+          +T  G I  +       +   + 
Sbjct: 195 DVDNVPLIVTLSKIGHRHVVDASWEEELCSLARLTVGVTQKGTIAGLNKEG-SGSLDPES 253

Query: 216 FFAMLNLAKDRIADLIKLQKDVISNE 241
            + M+   K     L    K+ +  E
Sbjct: 254 IYEMIESGKKVGMVLNSRLKEALEKE 279


>gi|187610337|sp|Q8FPB7|PNP_COREF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 752

 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 89/242 (36%), Gaps = 14/242 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
            R+ GR  + +R++ +   +   A GS L + G+T +L   TL+    E+    +     
Sbjct: 366 FRIDGRGVSDIRDLGVEVELIPRAHGSSLFERGETQILGVTTLDMLKMEQHIDSLAPVDT 425

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RA+  V+         I    
Sbjct: 426 KRYMHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERAVLPVIPSREDFPYAIRQVS 481

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  + ++L++    ++       +     G V+    G      + D
Sbjct: 482 EALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAM-----GLVSDEVDGKTEYVALTD 536

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    I  +Q   +            L  A+D    +++   +
Sbjct: 537 ILGAEDAFGDMDFKVAGTAEF-ITALQLDTKLDGIPSKVLADALEQARDARLAILETMAE 595

Query: 237 VI 238
           VI
Sbjct: 596 VI 597



 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 83/252 (32%), Gaps = 29/252 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      +++ A+G+      D T LL T T      E +  +             G 
Sbjct: 29  RTIRFETGQLARQADGAVTTYLDDETMLLATTTASNQPREGLDFFPLTVDVEERMYAAGR 88

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q+II    +  +   
Sbjct: 89  IP---GSFFRRE---GRPSTEAILACRLIDRPLRPTFVKGLRNEVQVIITVMSVSPEDSY 142

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQV-----LKGHVAAISCGMLCGYPIVDL--- 177
              AI GA  A       +       +++ +      +G   A          + +L   
Sbjct: 143 DVVAINGASAATRISGLPVSGAVGGVRMALIADENHPEGQWVAFPTAEQQKASVFELVVA 202

Query: 178 -DYGEDSTID---VDANFVMTDSG---HIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
               E    +    D   +M ++G   ++VE       A  ++      L  AK  I  L
Sbjct: 203 GRLVERKRGNKTFSDVAVMMVEAGASENVVERIKEGAPAP-TEKTVAEGLEAAKPFIDLL 261

Query: 231 IKLQKDVISNEV 242
            + Q + ++  V
Sbjct: 262 CRAQ-EGLAQRV 272


>gi|84496941|ref|ZP_00995795.1| putative polyribonucleotide nucleotidyltransferase [Janibacter sp.
           HTCC2649]
 gi|84383709|gb|EAP99590.1| putative polyribonucleotide nucleotidyltransferase [Janibacter sp.
           HTCC2649]
          Length = 807

 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 87/242 (35%), Gaps = 14/242 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R +S    V     GS + + G+T ++   TL     E+    +     
Sbjct: 347 VRIDGRGLADIRALSAEVEVLPRVHGSAIFERGETQIMGVTTLNMLRMEQQLDTLSPVTR 406

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 407 KRYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALMPVLPTREEFPYAIRQVS 462

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  + ++L +    +        +     G V+A   G+     + D
Sbjct: 463 EALSSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAM-----GLVSAEVDGVTQYAALTD 517

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    +  +Q   +      +   + L  A++    ++ +  +
Sbjct: 518 ILGAEDAFGDMDFKVAGTREF-VTAIQLDTKLDGIPAEVLGSALTQAREARLHILDVMNE 576

Query: 237 VI 238
            I
Sbjct: 577 AI 578



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 71/244 (29%), Gaps = 43/244 (17%)

Query: 12  REISLTRR-VSKYAEG--SCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYG 64
           R +      ++K A G  S  +   DT LL+T T      E    +             G
Sbjct: 21  RTVRFETGRLAKQAGGAVSAYLDE-DTMLLSTTTAGKHPREGFDFFPLTVDVEERMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR           Q++I    +  D  
Sbjct: 80  KIP---GSFFRRE---GRPSTEAILTCRLIDRPLRPTFKKGLRNEVQVVISVLALNPDAQ 133

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               AI  A  +                      G + A+   ++    +    + +   
Sbjct: 134 YDVLAINAASASTQ-------------ISGLPFSGPIGAVRVSLINDQWVAFPQFSDIER 180

Query: 185 IDVDANFVM-----TDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIA 228
              D               I+ V+  A   T+           ++D     L  AK  I 
Sbjct: 181 STFDMVVAGRIVDDGSDVAIMMVEAEATEQTWNLVKNEGKTAPTEDVVAQGLEAAKGFIK 240

Query: 229 DLIK 232
            L +
Sbjct: 241 VLCE 244


>gi|295395380|ref|ZP_06805579.1| polyribonucleotide nucleotidyltransferase [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971702|gb|EFG47578.1| polyribonucleotide nucleotidyltransferase [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 749

 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 87/248 (35%), Gaps = 16/248 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R +S    +     GS L + G+T ++   T      +E+++      T
Sbjct: 342 VRIDGRGIKDIRPLSAETNILPRVHGSALFERGETQIM-GVTTLDMLKMEQQIDSLTPVT 400

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              +I   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 401 SKRYIH-HYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVIPSREDFPYAIRQ 455

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             + + ++G T   ++  + ++L      +        +   L   V     G    Y  
Sbjct: 456 VSEALGSNGSTSMGSVCASTMSLLSAGVPLRAPVAGIAMG--LVSDVIETDQGKQTAYAA 513

Query: 175 V-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           + D+   ED+  D+D     T    I  +Q   +          A L  A++    ++ +
Sbjct: 514 LTDILGAEDAFGDMDFKVAGTKDF-ITAIQLDTKLDGIPASVLAAALKQAREARLTILDV 572

Query: 234 QKDVISNE 241
               I+  
Sbjct: 573 LTAAIAEP 580



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 77/238 (32%), Gaps = 38/238 (15%)

Query: 23  YAEGSCLVKF-GDTHLL-TTAT---LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKRE 77
            A G       G+T LL  TA      E    +             G +P   G+  +RE
Sbjct: 37  QAAGCATATLDGETTLLSATAVSKNPREGFDFFPLTVDVEERMYAAGKIP---GSFFRRE 93

Query: 78  AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137
              GR    +    R+I R LR           QI++    +  D              L
Sbjct: 94  ---GRPTTDAILACRLIDRPLRPSFVKGLRNEVQIVVTVLSMHPD-------------HL 137

Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF---VMT 194
           +D L       +         G +  +   ++    +   +Y +      D      V+ 
Sbjct: 138 YDTLAINAASMSTQLGGLPFSGPIGGVRIALIDDQWVAFPNYSQLENAVFDMAVAGRVVG 197

Query: 195 DSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           D   I+ V+  A   ++          +++     L  AK  I +L++ Q++ +++ V
Sbjct: 198 DDVAIMMVEAEASENSWDLIQGGARKPTEEVVAEGLEAAKPFIRELVRAQQE-LADRV 254


>gi|308800668|ref|XP_003075115.1| putative exonuclease RRP41 (ISS) [Ostreococcus tauri]
 gi|116061669|emb|CAL52387.1| putative exonuclease RRP41 (ISS) [Ostreococcus tauri]
          Length = 321

 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 84/253 (33%), Gaps = 42/253 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN---TKHG 57
           +RL GR+ N++R       +    +GS   + G+T +        +          ++  
Sbjct: 60  LRLDGRRANEIRRPRHAFAIDAQCDGSARFELGNTVIECRVDGPSERKFGGAEEGASEAC 119

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +T  +G    ++           +  GRS++ + ++ +AL S V +  +   ++ +   
Sbjct: 120 ALTCSHGRSAFASDGVQ----AGRKGDGRSKQFESVLAKALTSAVCVDLMPRCEVQVRTT 175

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+  DGG                                LKG + + + G L G  ++D+
Sbjct: 176 VLCDDGG-------------ARAASACAAVLALADAGIPLKGIIGSCTVGHLDGEALIDV 222

Query: 178 DYGEDSTIDVDA----------------------NFVMTDSGHIVEVQGSAERATFSQDH 215
           +  E+     +                       + +     HI  +    ER   + + 
Sbjct: 223 NRDEERGRGPELWTCALSAGDVPDDDENEDDGEDHLMGATGNHITVIVEELERGKTTMET 282

Query: 216 FFAMLNLAKDRIA 228
           F +M +LA     
Sbjct: 283 FKSMHDLALAGCE 295


>gi|114595910|ref|XP_001153969.1| PREDICTED: exosome component 9 isoform 3 [Pan troglodytes]
          Length = 402

 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L    + N+
Sbjct: 253 IAGVKVAEITELILKALEND 272


>gi|322799219|gb|EFZ20634.1| hypothetical protein SINV_00940 [Solenopsis invicta]
          Length = 384

 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 86/261 (32%), Gaps = 29/261 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR+  + R + +       + G C+V  G T ++T  + + + P   R    G I  
Sbjct: 23  RLDGRKLLEPRSVKI---YFGSSWGCCMVSLGHTRVVTQVSCDIQQPKASR-PNEGTIRI 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------II 113
              + P +      +   SGR    +  I R + +  +    VDL +L          + 
Sbjct: 79  NVELAPLA-----AQHFESGRPSEAAILISRQLEKCFKDSKCVDLESLCIVADKKVWNLR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-----------LKGHVA 162
           ID +VI  DG     A      AL    +     + +  +                  + 
Sbjct: 134 IDVNVINHDGNLIDCASVATLAALIHFHRPDVTSTGEEVIIHPASEKDFLPLTLFHYPIC 193

Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML-N 221
                   G  ++D  Y E+     +    M     +  +       T   +   + + +
Sbjct: 194 ISFITFQSGNTVMDPTYLEERVGVAELTLGMNSYRELCSLHFDYLTKTMIIEDVISAVSS 253

Query: 222 LAKDRIADLIKLQKDVISNEV 242
            A +    L++  K+ +  +V
Sbjct: 254 HAANYATKLVQQIKETVMKDV 274


>gi|171741337|ref|ZP_02917144.1| hypothetical protein BIFDEN_00416 [Bifidobacterium dentium ATCC
           27678]
 gi|171276951|gb|EDT44612.1| hypothetical protein BIFDEN_00416 [Bifidobacterium dentium ATCC
           27678]
          Length = 880

 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 91/249 (36%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R +S    +     GS L + G+T +L  +TL     E+    +   +  
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVSTLNMLKMEQQIDALSGPQSK 405

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P STG   +  +   R+ G       +  +AL  V+         I    +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHG----ALAEKALVPVLPSREEFPYAIRQVSE 461

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            I ++G T   ++  + ++L                   LK  VA I+ G++ G      
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGV-------------PLKAPVAGIAMGLVSGDVDGQH 508

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    I  +Q   +      D   + L  AK+    
Sbjct: 509 IFKTLTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILASALQQAKEARTT 567

Query: 230 LIKLQKDVI 238
           ++++  + I
Sbjct: 568 ILEVINECI 576



 Score = 48.5 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 75/247 (30%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   D+ +L      ++ +E    +             G
Sbjct: 21  RTLRFETGRLAQQADGAVAAYLDD-DSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     +  D  
Sbjct: 80  KIP---GSFFRRE---GRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDA 133

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  +                     +G V+ +   ++ G  +    + E   
Sbjct: 134 YDVIALNAASAS-------------TMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER 180

Query: 185 I----DVDANFVMTDSGHIVEVQGSA----------ERATFSQDHFFA-MLNLAKDRIAD 229
                 V    V      I  ++  A          E  T   +   A     AK  I  
Sbjct: 181 AVFEIVVAGRVVENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGFEAAKPFIKV 240

Query: 230 LIKLQKD 236
           + + Q +
Sbjct: 241 ICEAQAE 247


>gi|122920907|pdb|2NN6|A Chain A, Structure Of The Human Rna Exosome Composed Of Rrp41,
           Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
          Length = 358

 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 40  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 95

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 96  NLELSQMAAPA-----FEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIR 150

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 151 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 210

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D       
Sbjct: 211 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 269

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L    + N+
Sbjct: 270 IAGVKVAEITELILKALEND 289


>gi|328767537|gb|EGF77586.1| hypothetical protein BATDEDRAFT_91577 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 276

 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 85/262 (32%), Gaps = 30/262 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  N +R I +T        G   V+ G T +++T + E  V     N   G I 
Sbjct: 24  IRTDGRTSNTIRNIKITLGPQ---LGFAQVQLGKTRIMSTVSCEI-VRPSSGNPSDGVIH 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQ--I 112
                 P ++                   I RM+ +ALR   VVD   L    G +   I
Sbjct: 80  FNTEFSPMASPA-----FEVDSTSENEILISRMLEKALRRARVVDTEGLCIVAGEKVWAI 134

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK------FQLSQVL-----KGHV 161
            +D  V+  +G     A   A  +L    +       +       +    +        +
Sbjct: 135 RVDIRVLNHEGNILDCACIAAMCSLLHFKRPDVTVIGEDVTIHTLEEKNPIGLNIHHIPI 194

Query: 162 AAISCGMLCGYP-IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
                    G   ++D    E+   D D   V+     +  +  +      S +      
Sbjct: 195 CVTFAFFHQGEYQVIDPSLLEEQAQDGDMTIVVNIHRELCTLSKAG-GTPISPEQVIHCA 253

Query: 221 NLAKDRIADLIKLQKDVISNEV 242
           N+A  + AD+ +L +  I   +
Sbjct: 254 NVAAIKSADITQLIRQAILEVL 275


>gi|119025278|ref|YP_909123.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154486675|ref|ZP_02028082.1| hypothetical protein BIFADO_00496 [Bifidobacterium adolescentis
           L2-32]
 gi|187470939|sp|A1A008|PNP_BIFAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|118764862|dbj|BAF39041.1| polynucleotide nucleotidyl transferase [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154084538|gb|EDN83583.1| hypothetical protein BIFADO_00496 [Bifidobacterium adolescentis
           L2-32]
          Length = 892

 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R +S    +     GS L + G+T +L   TL     E+    +   +  
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P STG   +  +   R+ G       +  +AL  V+         I    +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHG----ALAEKALVPVLPSREEFPYAIRQVSE 461

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            I ++G T   ++  + ++L                   LK  VA I+ G++ G      
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGV-------------PLKAPVAGIAMGLVSGDVDGQH 508

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    I  +Q   +      D   + L  AK+    
Sbjct: 509 IYKTLTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILASALQQAKEARTT 567

Query: 230 LIKLQKDVI 238
           ++++  + I
Sbjct: 568 ILEVINECI 576



 Score = 51.6 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 76/247 (30%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   D+ +L      ++ +E    +             G
Sbjct: 21  RTLRFETGRLAQQADGAVAAYLDD-DSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     +  D  
Sbjct: 80  KIP---GSFFRRE---GRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDA 133

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  +                     +G V+ +   ++ G  +    + E   
Sbjct: 134 YDVVALNAASAS-------------TMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER 180

Query: 185 I----DVDANFVMTDSGHIVEVQGSA----------ERATFSQDHFFA-MLNLAKDRIAD 229
                 V    V      I  ++  A          E  T   +   A  L  AK  I  
Sbjct: 181 AVFEIVVAGRVVENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKV 240

Query: 230 LIKLQKD 236
           + + Q +
Sbjct: 241 ICEAQAE 247


>gi|332820219|ref|XP_001154217.2| PREDICTED: exosome complex component RRP45 isoform 7 [Pan
           troglodytes]
          Length = 392

 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L    + N+
Sbjct: 253 IAGVKVAEITELILKALEND 272


>gi|302691292|ref|XP_003035325.1| hypothetical protein SCHCODRAFT_50397 [Schizophyllum commune H4-8]
 gi|300109021|gb|EFJ00423.1| hypothetical protein SCHCODRAFT_50397 [Schizophyllum commune H4-8]
          Length = 259

 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 75/238 (31%), Gaps = 19/238 (7%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
           SGR E  +R I L   +   A GS  ++     +        +    +  ++ G +  E 
Sbjct: 35  SGRGELDIRPIFLRPGLISQANGSAYIEADKIKIACAVYGPRQNKN-VAYSEQGRLNVEV 93

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
              P +T    +R+A       RS  I   I +AL + V L  L    + I   +I+ADG
Sbjct: 94  KYAPYATA---RRKAPLRDAEDRS--IGVAIHQALLASVRLELLPKSTVDIFLVIIEADG 148

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
                               +   +        + G V++ S  +      +D    E  
Sbjct: 149 -----------KEASIASGAVAASAALADAGIEMLGLVSSCSAAVTGDKIWLDPSAAESE 197

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
               D   +++    +  V    +            ++  + +  D+  +    +   
Sbjct: 198 QA--DGTVILSCMPALDSVTSVWQSGRLPPQKALECMHACQQKCVDIHSVVAQALLEH 253


>gi|254776111|ref|ZP_05217627.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium avium
           subsp. avium ATCC 25291]
          Length = 748

 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 88/251 (35%), Gaps = 17/251 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    V   A GS L + G+T +L   T  + V M  +    G  T
Sbjct: 337 FRIDGRGITDIRALSAEVAVVPRAHGSALFQRGETQIL-GVTTLDMVKMAQQIDSLGPET 395

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSRQIII 114
                  Y   P STG   +  +   R+ G       +  RAL  V+  L       I  
Sbjct: 396 TKRYMHHYNFPPFSTGETGRVGSPKRREIGHG----ALAERALVPVLPSLEDFP-YAIRQ 450

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG-HVAAISCGMLCGY- 172
             + + ++G T   ++  + +AL +    ++       +  V     V A          
Sbjct: 451 VSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDIEVEAGDGTKSLERR 510

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED+  D+D     T    +  +Q   +            L+ AKD    +
Sbjct: 511 FVTLTDILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPSQVLAGALSQAKDARLII 569

Query: 231 IKLQKDVISNE 241
           +++  + I   
Sbjct: 570 LEVMAEAIDEP 580



 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 55/188 (29%), Gaps = 34/188 (18%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  +RE   GR    +    R+I R LR           Q+++    +  +        
Sbjct: 78  GSFFRRE---GRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVVTILSLDPN-------- 126

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
                 L+D L      ++         G +  +   ++ G  +      +      D  
Sbjct: 127 -----DLYDVLAINAASASTQLGGLPFSGPIGGVRVALIDGTWVAFPTVEQLERAVFDMV 181

Query: 191 FVMTDSGH---------IVEVQGSAERATF--------SQDHFFAMLNLAKDRIADLIKL 233
                            +VE + ++             ++      L  AK  I  L   
Sbjct: 182 VAGRKVDGADGPDVAIMMVEAEATSNVIELIDGGAQAPTETVVAQGLEAAKPFIEVLCTA 241

Query: 234 QKDVISNE 241
           Q++ ++++
Sbjct: 242 QQE-LADK 248


>gi|306823630|ref|ZP_07457005.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium dentium
           ATCC 27679]
 gi|304553337|gb|EFM41249.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium dentium
           ATCC 27679]
          Length = 880

 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 91/249 (36%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R +S    +     GS L + G+T +L  +TL     E+    +   +  
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVSTLNMLKMEQQIDALSGPQSK 405

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P STG   +  +   R+ G       +  +AL  V+         I    +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHG----ALAEKALVPVLPSREEFPYAIRQVSE 461

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            I ++G T   ++  + ++L                   LK  VA I+ G++ G      
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGV-------------PLKAPVAGIAMGLVSGDVDGQH 508

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    I  +Q   +      D   + L  AK+    
Sbjct: 509 IFKTLTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILASALQQAKEARTT 567

Query: 230 LIKLQKDVI 238
           ++++  + I
Sbjct: 568 ILEVINECI 576



 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 76/247 (30%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   D+ +L      ++ +E    +             G
Sbjct: 21  RTLRFETGRLAQQADGAVAAYLDD-DSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     +  D  
Sbjct: 80  KIP---GSFFRRE---GRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDA 133

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  +                     +G V+ +   ++ G  +    + E   
Sbjct: 134 YDVIALNAASAS-------------TMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER 180

Query: 185 I----DVDANFVMTDSGHIVEVQGSA----------ERATFSQDHFFA-MLNLAKDRIAD 229
                 V    V      I  ++  A          E  T   +   A  L  AK  I  
Sbjct: 181 AVFEIVVAGRVVENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKV 240

Query: 230 LIKLQKD 236
           + + Q +
Sbjct: 241 ICEAQAE 247


>gi|283455304|ref|YP_003359868.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium dentium
           Bd1]
 gi|283101938|gb|ADB09044.1| Pnp Polyribonucleotide nucleotidyltransferase [Bifidobacterium
           dentium Bd1]
          Length = 880

 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 91/249 (36%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R +S    +     GS L + G+T +L  +TL     E+    +   +  
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVSTLNMLKMEQQIDALSGPQSK 405

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P STG   +  +   R+ G       +  +AL  V+         I    +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHG----ALAEKALVPVLPSREEFPYAIRQVSE 461

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            I ++G T   ++  + ++L                   LK  VA I+ G++ G      
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGV-------------PLKAPVAGIAMGLVSGDVDGQH 508

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    I  +Q   +      D   + L  AK+    
Sbjct: 509 IFKTLTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILASALQQAKEARTT 567

Query: 230 LIKLQKDVI 238
           ++++  + I
Sbjct: 568 ILEVINECI 576



 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 76/247 (30%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   D+ +L      ++ +E    +             G
Sbjct: 21  RTLRFETGRLAQQADGAVAAYLDD-DSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     +  D  
Sbjct: 80  KIP---GSFFRRE---GRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDA 133

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  +                     +G V+ +   ++ G  +    + E   
Sbjct: 134 YDVIALNAASAS-------------TMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER 180

Query: 185 I----DVDANFVMTDSGHIVEVQGSA----------ERATFSQDHFFA-MLNLAKDRIAD 229
                 V    V      I  ++  A          E  T   +   A  L  AK  I  
Sbjct: 181 AVFEIVVAGRVVENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKV 240

Query: 230 LIKLQKD 236
           + + Q +
Sbjct: 241 ICEAQAE 247


>gi|308235438|ref|ZP_07666175.1| polynucleotide phosphorylase/polyadenylase [Gardnerella vaginalis
           ATCC 14018]
 gi|311114219|ref|YP_003985440.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis
           ATCC 14019]
 gi|310945713|gb|ADP38417.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis
           ATCC 14019]
          Length = 914

 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 92/251 (36%), Gaps = 34/251 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNTK 55
           R+ GR    +R +S    +     GS L + G+T +L   T      +E++V   +   +
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQIL-GVTTLNMLKMEQQVDA-LSGPQ 403

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y M P STG   +  +   R+ G       +  +AL  V+         I   
Sbjct: 404 TKRYMHNYEMPPYSTGETGRVGSPKRREIGHG----ALAEKALVPVLPSREEFPYAIRQV 459

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            + I ++G T   ++  + ++L                   LK  VA I+ G++ G    
Sbjct: 460 SEAIGSNGSTSMGSVCASTLSLLAAGV-------------PLKAPVAGIAMGLVSGDVDG 506

Query: 174 ------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                 + D+   ED+  D+D     T    I  +Q   +      D   A L  A +  
Sbjct: 507 KHIFKTLTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAAALQQAHEAR 565

Query: 228 ADLIKLQKDVI 238
           A ++++  + I
Sbjct: 566 ATILEVINECI 576



 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 75/247 (30%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   D+ +L      ++ +E    +             G
Sbjct: 21  RTLRFETGRLAQQADGAVAAYLDD-DSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     I  D  
Sbjct: 80  KIP---GSFFRRE---GRPSNEATLACRIIDRPLRPLFPHTLRNEVQVVETILAINPDDA 133

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  +                     +G V+ +   ++ G  +    + E   
Sbjct: 134 YDVIALNAASAS-------------TMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER 180

Query: 185 I----DVDANFVMTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIAD 229
                 V    +      I  ++  A +  +            ++     L  AK  I  
Sbjct: 181 AVFEIVVAGRVIENGDVAIAMIEAGAGKNAWNLIYNEGQIKPDEEVVAGGLEAAKPFIKV 240

Query: 230 LIKLQKD 236
           +   Q +
Sbjct: 241 ICDAQNE 247


>gi|298705981|emb|CBJ29102.1| similar to exosome component 6 [Ectocarpus siliculosus]
          Length = 274

 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 83/257 (32%), Gaps = 26/257 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSK--YAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           +R  GR+   +R IS+   V      + S LV  G T +L   +L+   P        G 
Sbjct: 23  VRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPS-ENTPMCGM 81

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS---------VVDLSALGS 109
           +  E  + P S+         SGR   ++  +   +  ++            +D  A  +
Sbjct: 82  LDVEVKLTPLSSSK-----FSSGRPSEQAHVLSTFVKNSIVESGALVLTDLAIDDGAF-A 135

Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMED-------CSNKFQLSQVLKGHVA 162
            ++ +D   +  DG    A +  A  AL                 +       V++    
Sbjct: 136 WKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTEDTPTQLVVREVPV 195

Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
            ++CG+  G  I D    E+  +      V T  G +  V      +  S       L L
Sbjct: 196 PLTCGVFDGIIIADPSLLEEELLTTHVTVVSTSEGKVCGVHKPG-GSCASGKQLNECLQL 254

Query: 223 AKDRIADLIKLQKDVIS 239
            +     L +     + 
Sbjct: 255 CQQHAKQLTQTLAAAVR 271


>gi|55644221|ref|XP_523406.1| PREDICTED: exosome complex component MTR3 [Pan troglodytes]
          Length = 272

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 71/248 (28%), Gaps = 34/248 (13%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---------- 55
           R   ++R +     +   A+GS  ++ G T +L   +   +     R +           
Sbjct: 31  RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGSGPAGAGGEAPA 90

Query: 56  --HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
              G +  ++   P +     +R A  G    R  E+   +  AL   V L      Q+ 
Sbjct: 91  ALRGRLLCDFRRAPFAG---RRRRAPPGGCEER--ELALALQEALEPAVRLGRYPRAQLE 145

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-- 171
           +   +++ DGG+                               +   V      +  G  
Sbjct: 146 VSALLLE-DGGS------------ALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPA 192

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              ++D    E+          +    + V     +     + + +   + L  +    L
Sbjct: 193 PTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLT-ESWAEAVRLGLEGCQRL 251

Query: 231 IKLQKDVI 238
             + +  +
Sbjct: 252 YPVLQQSL 259


>gi|114595906|ref|XP_001154031.1| PREDICTED: exosome complex component RRP45 isoform 4 [Pan
           troglodytes]
          Length = 456

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L    + N+
Sbjct: 253 IAGVKVAEITELILKALEND 272


>gi|297817356|ref|XP_002876561.1| hypothetical protein ARALYDRAFT_486522 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322399|gb|EFH52820.1| hypothetical protein ARALYDRAFT_486522 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 438

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 91/259 (35%), Gaps = 33/259 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R++++         GS  V+ G TH++   T +  V  +      G ++
Sbjct: 27  LRVDGRGLYDYRKLTIKFG---KEYGSSEVQLGQTHVMGFVTAQ-MVQPYKDRPNEGSLS 82

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQI 112
                 P +  +        GR G  + E+ R+I R LR    VD  +L          +
Sbjct: 83  IFTEFSPMADPS-----FEPGRPGESAVELGRIIDRGLRESRAVDTESLCILAGKMVWSV 137

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH-------------MEDCSNKFQLSQVLKG 159
            ID  ++   G    AA   A  AL    +              +     +  L  ++  
Sbjct: 138 RIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEVIIHPPEEREPLPLIIHH 197

Query: 160 HVAAISCGMLC--GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
              A + G        ++D  Y E++ +       +  +G I  +Q   E    +Q    
Sbjct: 198 LPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDICAIQKPGEEGV-NQSVIL 256

Query: 218 AMLNLAKDRIADLIKLQKD 236
             L LA  R A   K+ ++
Sbjct: 257 HCLRLASSRAAATTKIIRE 275


>gi|114595918|ref|XP_001153729.1| PREDICTED: exosome component 9 isoform 1 [Pan troglodytes]
          Length = 423

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 7   RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 63  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 117

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 118 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 177

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D       
Sbjct: 178 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 236

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L    + N+
Sbjct: 237 IAGVKVAEITELILKALEND 256


>gi|297243010|ref|ZP_06926948.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis
           AMD]
 gi|296889221|gb|EFH27955.1| polyribonucleotide nucleotidyltransferase [Gardnerella vaginalis
           AMD]
          Length = 920

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 91/251 (36%), Gaps = 34/251 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNTK 55
           R+ GR    +R +S    V     GS L + G+T +L   T      +E++V   +   +
Sbjct: 346 RIDGRGLRDIRTLSAEVDVVPRVHGSALFQRGETQIL-GVTTLNMLKMEQQVDA-LSGPQ 403

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                  Y M P STG   +  +   R+ G       +  +AL  V+         I   
Sbjct: 404 TKRYMHNYEMPPYSTGETGRVGSPKRREIGHG----ALAEKALVPVLPGREEFPYAIRQV 459

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            + I ++G T   ++  + ++L                   LK  VA I+ G++ G    
Sbjct: 460 SEAIGSNGSTSMGSVCASTLSLLAAGV-------------PLKAPVAGIAMGLVSGDVDG 506

Query: 174 ------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                 + D+   ED+  D+D     T    I  +Q   +      D   A L  A +  
Sbjct: 507 KHIFKTLTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAAALQQAHEAR 565

Query: 228 ADLIKLQKDVI 238
             ++++  + I
Sbjct: 566 TTILEVINECI 576



 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 75/247 (30%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   D+ +L      ++ +E    +             G
Sbjct: 21  RTLRFETGRLAQQADGAVAAYLDD-DSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     I  D  
Sbjct: 80  KIP---GSFFRRE---GRPSNEATLACRIIDRPLRPLFPHTLRNEVQVVETILAINPDDA 133

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  +                     +G V+ +   ++ G  +    + E   
Sbjct: 134 YDVIALNAASAS-------------TMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER 180

Query: 185 I----DVDANFVMTDSGHIVEVQGSAERATFS---------QDHFFAM--LNLAKDRIAD 229
                 V    +      I  ++  A +  ++          D       L  AK  I  
Sbjct: 181 AVFEIVVAGRVIENGDVAIAMIEAGAGKNAWNLIYNDGQTKPDEQVVAGGLEAAKPFIKV 240

Query: 230 LIKLQKD 236
           +   Q +
Sbjct: 241 ICDAQNE 247


>gi|221482227|gb|EEE20582.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 392

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 77/258 (29%), Gaps = 61/258 (23%)

Query: 1   MRLSGRQ-ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           +R  GR+   ++R +++    ++ A GS  V  G T ++       + P   + +  G  
Sbjct: 27  LRPDGREHARELRPLTVKLGFARTAHGSARVSQGLTSVIALVVGPVEAPPGPKYSSSG-C 85

Query: 60  TAEYGMLPRST--------------------------GNRVKREAVSGRQGGRSQEIQRM 93
                + P +                           G R  R A       R  E Q  
Sbjct: 86  FFHVILKPLAGPPMLSAARTAAAIGGCDSAVASGTARGTRRGRGAFGSESFERWMECQ-- 143

Query: 94  IGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM--------- 144
           +   L+ +V         + +   ++Q DGG  +A I  A  AL D    +         
Sbjct: 144 LQTLLQHMVLPGEYPRCLVQLTLMILQDDGGAESACINAALAALIDAGVSLRFRAWATNL 203

Query: 145 --------------------EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD-YGEDS 183
                               E  S +       +  +   SCG   G   +D     ED 
Sbjct: 204 VRLARSACISETKTCLEGTDEGGSGRAVRDSGQRRPLTVPSCGHEEGQWCIDPCSEEEDG 263

Query: 184 TIDVDANFVM-TDSGHIV 200
             +     V+   +G +V
Sbjct: 264 RKEGAICLVLEPQTGDLV 281


>gi|309802878|ref|ZP_07696979.1| guanosine pentaphosphate ligase I/polyribonucleotide
           nucleotidyltransferase [Bifidobacterium dentium
           JCVIHMP022]
 gi|308220345|gb|EFO76656.1| guanosine pentaphosphate ligase I/polyribonucleotide
           nucleotidyltransferase [Bifidobacterium dentium
           JCVIHMP022]
          Length = 763

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 91/249 (36%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R +S    +     GS L + G+T +L  +TL     E+    +   +  
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVSTLNMLKMEQQIDALSGPQSK 405

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P STG   +  +   R+ G       +  +AL  V+         I    +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHG----ALAEKALVPVLPSREEFPYAIRQVSE 461

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            I ++G T   ++  + ++L                   LK  VA I+ G++ G      
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGV-------------PLKAPVAGIAMGLVSGDVDGQH 508

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    I  +Q   +      D   + L  AK+    
Sbjct: 509 IFKTLTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILASALQQAKEARTT 567

Query: 230 LIKLQKDVI 238
           ++++  + I
Sbjct: 568 ILEVINECI 576



 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 76/247 (30%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   D+ +L      ++ +E    +             G
Sbjct: 21  RTLRFETGRLAQQADGAVAAYLDD-DSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     +  D  
Sbjct: 80  KIP---GSFFRRE---GRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDA 133

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  +                     +G V+ +   ++ G  +    + E   
Sbjct: 134 YDVIALNAASAS-------------TMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER 180

Query: 185 I----DVDANFVMTDSGHIVEVQGSA----------ERATFSQDHFFA-MLNLAKDRIAD 229
                 V    V      I  ++  A          E  T   +   A  L  AK  I  
Sbjct: 181 AVFEIVVAGRVVENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKV 240

Query: 230 LIKLQKD 236
           + + Q +
Sbjct: 241 ICEAQAE 247


>gi|332020945|gb|EGI61339.1| Exosome complex exonuclease RRP42 [Acromyrmex echinatior]
          Length = 292

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 80/248 (32%), Gaps = 30/248 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTKHGWI 59
           +R  GR   Q R I +  ++ K+  GS  ++ G+ T +L    LE   P +    + G +
Sbjct: 22  LRNDGRSRYQYRPIEIETKLMKHTHGSARLRIGNITDVLVGVKLEIDTP-YAERPEEGKL 80

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQ 111
                    +T      E   G     + EI  ++  A ++    DL  L         +
Sbjct: 81  EFFVDCSANATPAF---EGKGG--DDLATEISNVLSMAYQTPDAFDLKQLCIIPHQKCWK 135

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS-------NKFQLSQV-------L 157
           I +D  ++Q  G    A       AL++        +       +              +
Sbjct: 136 IYVDILILQCGGNLFDAVGAAVKAALYNTEIPRVIIAILDGGEPDIQISDDPYDCIKLDV 195

Query: 158 KGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
             +   ++   +    ++D    E+S         +  +G +  V       +       
Sbjct: 196 TNYPVVLTVCKIGDNFVIDPTSEEESCSTASILMSVMPNGKVTSVVKLG-YGSLLPSTLI 254

Query: 218 AMLNLAKD 225
            ML + KD
Sbjct: 255 KMLQVGKD 262


>gi|288921719|ref|ZP_06415986.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Frankia sp. EUN1f]
 gi|288346891|gb|EFC81201.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Frankia sp. EUN1f]
          Length = 729

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 89/249 (35%), Gaps = 30/249 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR   ++RE+S          GS L + G+T +L   T      +E+ V       
Sbjct: 337 VRIDGRSTTEIRELSAEVDYIPRVHGSALFERGETQIL-GVTTLAMLRMEQTVDTLNPER 395

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              ++   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 396 TKRYMH-NYNFPPYSTGETGRVGSPKRREIGHG----ALAERALLPVLPDREEFPYAIRQ 450

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             + + ++G T   ++  + ++L +                 LK  VA I+ G++     
Sbjct: 451 VSEALGSNGSTSMGSVCASTLSLLNAGV-------------PLKAPVAGIAMGLIQEGDA 497

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED+  D+D     T    +  +Q   +            L  A+     +
Sbjct: 498 FVTLTDILGAEDAFGDMDFKVAGTRDF-VTALQLDTKLDGIPASVLAGALQQARAARLTI 556

Query: 231 IKLQKDVIS 239
           +++  + I 
Sbjct: 557 LEVMAEAIG 565



 Score = 78.6 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 77/245 (31%), Gaps = 39/245 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R +      +++ A GS +   GDT +L+  T+    +E++  +             G +
Sbjct: 19  RTVRFETGRLARQAAGSVVAYLGDTMVLSATTVSRSPKEQLDFFPLTVDVEERMYAAGRI 78

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+  +RE   GR    +    R+I R LR           Q++     +  +    
Sbjct: 79  P---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFAKGLRNEIQVVATVLALDPETLYD 132

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI  A  +                      G + A   G + G  I    + E     
Sbjct: 133 VVAINAASASTMLAGL-------------PFSGPIGATRVGFVDGEWIAFPTHAELERAT 179

Query: 187 VDANFVM-----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
            D               I+ V+  A   T           +++   A L  AK  I +L 
Sbjct: 180 FDMVVAGRVLEDGSDVAIMMVEAEATPGTVGLLAGGSPAPTEEVVAAGLEAAKPAIRELC 239

Query: 232 KLQKD 236
           + Q +
Sbjct: 240 RAQSE 244


>gi|194378034|dbj|BAG63380.1| unnamed protein product [Homo sapiens]
          Length = 392

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L    + N+
Sbjct: 253 IAGVKVAEITELILKALEND 272


>gi|77812672|ref|NP_001029366.1| exosome complex component RRP45 isoform 1 [Homo sapiens]
 gi|28172868|emb|CAD56889.1| polymyositis/scleroderma autoantigen 1 [Homo sapiens]
 gi|119625652|gb|EAX05247.1| exosome component 9, isoform CRA_a [Homo sapiens]
          Length = 456

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L    + N+
Sbjct: 253 IAGVKVAEITELILKALEND 272


>gi|119625657|gb|EAX05252.1| exosome component 9, isoform CRA_f [Homo sapiens]
          Length = 423

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 7   RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 63  NLELSQMAAPA-----FEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIR 117

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 118 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 177

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D       
Sbjct: 178 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 236

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L    + N+
Sbjct: 237 IAGVKVAEITELILKALEND 256


>gi|225351118|ref|ZP_03742141.1| hypothetical protein BIFPSEUDO_02704 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158574|gb|EEG71816.1| hypothetical protein BIFPSEUDO_02704 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 887

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R +S    +     GS L + G+T +L   TL     E+    +   +  
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P STG   +  +   R+ G       +  +AL  V+         I    +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHG----ALAEKALVPVMPSREEFPYAIRQVSE 461

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            I ++G T   ++  + ++L                   LK  VA I+ G++ G      
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGV-------------PLKAPVAGIAMGLVSGDVDGQH 508

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    I  +Q   +      D   + L  AK+    
Sbjct: 509 IFKTLTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILASALQQAKEARTT 567

Query: 230 LIKLQKDVI 238
           ++++  + I
Sbjct: 568 ILEVINECI 576



 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 76/247 (30%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   D+ +L      ++ +E    +             G
Sbjct: 21  RTLRFETGRLAQQADGAVAAYLDD-DSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     +  D  
Sbjct: 80  KIP---GSFFRRE---GRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDA 133

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  +                     +G V+ +   ++ G  +    + E   
Sbjct: 134 YDVIALNAASAS-------------TMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER 180

Query: 185 I----DVDANFVMTDSGHIVEVQGSA----------ERATFSQDHFFA-MLNLAKDRIAD 229
                 V    V      I  ++  A          E  T   +   A  L  AK  I  
Sbjct: 181 AVFEIVVAGRVVENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKV 240

Query: 230 LIKLQKD 236
           + + Q +
Sbjct: 241 ICEAQAE 247


>gi|237842251|ref|XP_002370423.1| 3' exoribonuclease family, domain 1 containing protein [Toxoplasma
           gondii ME49]
 gi|211968087|gb|EEB03283.1| 3' exoribonuclease family, domain 1 containing protein [Toxoplasma
           gondii ME49]
 gi|221502879|gb|EEE28593.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 392

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 77/258 (29%), Gaps = 61/258 (23%)

Query: 1   MRLSGRQ-ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           +R  GR+   ++R +++    ++ A GS  V  G T ++       + P   + +  G  
Sbjct: 27  LRPDGREHARELRPLTVKLGFARTAHGSARVSQGLTSVIALVVGPVEAPPGPKYSSSG-C 85

Query: 60  TAEYGMLPRST--------------------------GNRVKREAVSGRQGGRSQEIQRM 93
                + P +                           G R  R A       R  E Q  
Sbjct: 86  FFHVILKPLAGPPMLSAARTAAAIGGCDSAVASGTARGTRRGRGAFGSESFERWMECQ-- 143

Query: 94  IGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM--------- 144
           +   L+ +V         + +   ++Q DGG  +A I  A  AL D    +         
Sbjct: 144 LQTLLQHMVLPGEYPRCLVQLTLMILQDDGGAESACINAALAALIDAGVSLRFRAWATNL 203

Query: 145 --------------------EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD-YGEDS 183
                               E  S +       +  +   SCG   G   +D     ED 
Sbjct: 204 VRLARSACISETKTCLEGTDEGGSGRAVRDSGQRRPLTVPSCGHEEGQWCIDPCSEEEDG 263

Query: 184 TIDVDANFVM-TDSGHIV 200
             +     V+   +G +V
Sbjct: 264 RKEGAICLVLEPQTGDLV 281


>gi|78045505|ref|NP_001030225.1| exosome complex component RRP45 [Bos taurus]
 gi|122140086|sp|Q3SWZ4|EXOS9_BOVIN RecName: Full=Exosome complex component RRP45; AltName:
           Full=Exosome component 9
 gi|74356309|gb|AAI04588.1| Exosome component 9 [Bos taurus]
          Length = 440

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 93/260 (35%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIKISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTLEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD    E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFQQGTYLLVDPSEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++ ++ +L +  + N+
Sbjct: 253 IAGVKVVEITELIQKALEND 272


>gi|296486842|gb|DAA28955.1| exosome complex exonuclease RRP45 [Bos taurus]
          Length = 440

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 93/260 (35%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIKISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTLEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD    E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFQQGTYLLVDPSEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++ ++ +L +  + N+
Sbjct: 253 IAGVKVVEITELIQKALEND 272


>gi|296231558|ref|XP_002761078.1| PREDICTED: exosome complex exonuclease MTR3-like [Callithrix
           jacchus]
          Length = 271

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 72/248 (29%), Gaps = 34/248 (13%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---------- 55
           R   ++R +     +   A+GS  ++ G T +L   +   +     R             
Sbjct: 31  RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPA 90

Query: 56  --HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
              G +  ++   P +     +R A  G  GG  +E+   +  AL   V L      Q+ 
Sbjct: 91  ALRGRLLCDFRRAPFAG---RRRRAPQG--GGEERELALALQEALEPAVRLGRYPRAQLE 145

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-- 171
           +   +++ DGG+                               +   V      +  G  
Sbjct: 146 VSALLLE-DGGS------------ALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPA 192

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              ++D    E+          +    + V     +     + + +   + L  +    L
Sbjct: 193 STWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLT-ESWAEAVRLGLEGCQRL 251

Query: 231 IKLQKDVI 238
             + +  +
Sbjct: 252 YPVLQQCL 259


>gi|114595908|ref|XP_001154164.1| PREDICTED: exosome complex component RRP45 isoform 6 [Pan
           troglodytes]
          Length = 439

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L    + N+
Sbjct: 253 IAGVKVAEITELILKALEND 272


>gi|212716682|ref|ZP_03324810.1| hypothetical protein BIFCAT_01615 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660386|gb|EEB20961.1| hypothetical protein BIFCAT_01615 [Bifidobacterium catenulatum DSM
           16992]
          Length = 893

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R +S    +     GS L + G+T +L   TL     E+    +   +  
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P STG   +  +   R+ G       +  +AL  V+         I    +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHG----ALAEKALVPVLPNREEFPYAIRQVSE 461

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            I ++G T   ++  + ++L                   LK  VA I+ G++ G      
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGV-------------PLKAPVAGIAMGLVSGDVDGQH 508

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    I  +Q   +      D   + L  AK+    
Sbjct: 509 IFKTLTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILASALQQAKEARTT 567

Query: 230 LIKLQKDVI 238
           ++++  + I
Sbjct: 568 ILEVINECI 576



 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 76/247 (30%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   D+ +L      ++ +E    +             G
Sbjct: 21  RTLRFETGRLAQQADGAVAAYLDD-DSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     +  D  
Sbjct: 80  KIP---GSFFRRE---GRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPDDA 133

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  +                     +G V+ +   ++ G  +    + E   
Sbjct: 134 YDVIALNAASAS-------------TLISGLPFEGPVSGVRLALIDGQWVAFPRWSERER 180

Query: 185 I----DVDANFVMTDSGHIVEVQGSA----------ERATFSQDHFFA-MLNLAKDRIAD 229
                 V    V      I  ++  A          E  T   +   A  L  AK  I  
Sbjct: 181 AVFEIVVAGRVVENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKV 240

Query: 230 LIKLQKD 236
           + + Q +
Sbjct: 241 ICEAQTE 247


>gi|302686574|ref|XP_003032967.1| hypothetical protein SCHCODRAFT_76318 [Schizophyllum commune H4-8]
 gi|300106661|gb|EFI98064.1| hypothetical protein SCHCODRAFT_76318 [Schizophyllum commune H4-8]
          Length = 291

 Score = 86.7 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 80/227 (35%), Gaps = 24/227 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +  R++++       A+GS LV+ GDT ++     E   P  + + + G+I 
Sbjct: 46  VRPDGREFDAWRDVAVNVGSISTADGSSLVRLGDTTIVCGVKAEIAQPD-LDSPEDGFIV 104

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL---GSRQII-- 113
               +    +          G     +Q +   +   L +  V+  S+L     +     
Sbjct: 105 PNVDLPAICSPK-----FKPGPPTEEAQVLSDRLNEVLTAHDVLPTSSLIIHPGKAAWVL 159

Query: 114 -IDCDVIQADGGTRTAAITGAWVALHDCLQHMED---------CSNKFQLSQVLKGHVAA 163
            ID   I  DG    A +     AL                  CS   +    L     A
Sbjct: 160 YIDATCINYDGNAFDATLIAMIAALKSTRLPRAKYDEDTGKVTCSRHDRDPLTLTNLPIA 219

Query: 164 ISCGMLCG-YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERA 209
           +S G+  G   + DL   E+  +D +   ++   G ++ V  +    
Sbjct: 220 MSFGVFNGDTIMSDLTSFEEPLMDTNVTVILGQDGGVLSVTQAGMGG 266


>gi|209879934|ref|XP_002141407.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
 gi|209557013|gb|EEA07058.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
           RN66]
          Length = 414

 Score = 86.7 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 88/278 (31%), Gaps = 53/278 (19%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR  N+ R I +T    K  +G   VK G TH+L     E  +P  I     G +T
Sbjct: 13  LRIDGRTSNEFRRIQITLN--KTFDG-VEVKIGKTHVLCIIKAELMIPN-IDRPSEGQVT 68

Query: 61  AEYGMLPRSTG-----NRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSA------L 107
                 P S        R +R A+       S E+   I R L+     D         L
Sbjct: 69  FSVDYGPLSLNPNGQVYRHERNAL-------SIELANYIERTLKETGAFDTEVLCIISGL 121

Query: 108 GSRQIIIDCDVIQADGGTRTAAITGAWVALH------------------------DCLQH 143
            +  I  D   +  DG      I     A                          D L+ 
Sbjct: 122 CAWSIRCDIRALCDDGNLFDTCILATLSAFRHFRYKDIDCSSFLNKLKLNKYKNKDYLRI 181

Query: 144 MEDCSNKFQLSQVLKGHVAAISCGM--LCGYP--IVDLDYGEDSTIDVDANFVMTDSGHI 199
            +   N   +   +     +IS G   +      IVD    E+S +    +  +     +
Sbjct: 182 EQAIKNMDMIPLNIYHFPLSISIGYTRVNNELQYIVDPCSEEESILQAVLHIAINGGQQV 241

Query: 200 VEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
             +         + D     + LAK+  +++ +  K V
Sbjct: 242 CGLSKPG-GEKLTIDQINFAIQLAKNHGSNIHEYVKKV 278


>gi|324510352|gb|ADY44328.1| Exosome complex exonuclease RRP45 [Ascaris suum]
          Length = 431

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 91/262 (34%), Gaps = 32/262 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           +RL GR+ ++ R++ +       AE G+ LV  G T +    T     P   R    G +
Sbjct: 22  VRLDGRKCDEFRDLKVVVG----AEFGTSLVMAGSTKVSAQVTCNIVEPKSARG-NMGAV 76

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSR------Q 111
                M P  +          GR G +  E+ R++    R    VDL AL         Q
Sbjct: 77  EVHVDMSPMGSPT-----HEDGRLGPKGIELTRVLELLCRDCGAVDLEALCLTAYKKVWQ 131

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHV 161
           I +D  ++QADG     A   A  AL    +           +     K  +   +    
Sbjct: 132 IRVDVHILQADGALIDCASVAAITALAHFRRPDVTVLVDSILVHGSDKKAPIPLTVYHMP 191

Query: 162 AAISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
             +S G+       ++D    E   +             +  +  +      ++      
Sbjct: 192 ICVSFGIAPDGEQVVIDPTEREAMCLKGAFVVAANKRHEVCALHQTG-NLLLNEQLIVRC 250

Query: 220 LNLAKDRIADLIKLQKDVISNE 241
           +++A  R  D+ +L   V++++
Sbjct: 251 VDMAIQRAIDVTELISTVLTDD 272


>gi|77812670|ref|NP_005024.2| exosome complex component RRP45 isoform 2 [Homo sapiens]
 gi|147744559|sp|Q06265|EXOS9_HUMAN RecName: Full=Exosome complex component RRP45; AltName:
           Full=Autoantigen PM/Scl 1; AltName: Full=Exosome
           component 9; AltName: Full=P75 polymyositis-scleroderma
           overlap syndrome-associated autoantigen; AltName:
           Full=Polymyositis/scleroderma autoantigen 1; AltName:
           Full=Polymyositis/scleroderma autoantigen 75 kDa;
           Short=PM/Scl-75
 gi|28172864|emb|CAD44530.1| polymyositis/scleroderma autoantigen 1 [Homo sapiens]
 gi|119625653|gb|EAX05248.1| exosome component 9, isoform CRA_b [Homo sapiens]
          Length = 439

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L    + N+
Sbjct: 253 IAGVKVAEITELILKALEND 272


>gi|331233354|ref|XP_003329338.1| hypothetical protein PGTG_10390 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309308328|gb|EFP84919.1| hypothetical protein PGTG_10390 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 324

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 78/251 (31%), Gaps = 32/251 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +  R I +   V   A GSC ++ G++ ++      +       ++    +  
Sbjct: 94  RADGRIHSDSRPICIKVGVISQANGSCYIESGNSKVICAVYGPKPRSSLSNSSSLSPLVI 153

Query: 62  EYGMLPRST-GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
                P    G R+   A+ G +   SQ  Q+ +  +L  + D     S  + +  +V++
Sbjct: 154 SLRFAPFCMAGGRMAPTALGGVETTVSQLTQQALMPSLLPMSD-----SSIVEVHINVLE 208

Query: 121 ADG----GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
            D     G     +  + +AL                           S   L     +D
Sbjct: 209 WDSPLSPGP---CVLASSIALASAGIPTVGLVIP--------------STLALSKELYLD 251

Query: 177 LDYGEDSTIDVDANFV-MTDSGHIVEV----QGSAERATFSQDHFFAMLNLAKDRIADLI 231
               E  +     +   +   G +  V        + A    D F   L+L K     + 
Sbjct: 252 PTATEAESASAIFDLASIPAMGTVTHVGFRSTTDWKSAPIGNDTFDRCLDLCKSNAELIH 311

Query: 232 KLQKDVISNEV 242
            L    + + +
Sbjct: 312 GLAAAALKDHL 322


>gi|146218577|gb|AAI40040.1| Exosome component 9 [synthetic construct]
 gi|146218579|gb|AAI40039.1| Exosome component 9 [synthetic construct]
 gi|148745755|gb|AAI42979.1| Exosome component 9 [Homo sapiens]
          Length = 439

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFQQGAYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L    + N+
Sbjct: 253 IAGVKVAEITELILKALEND 272


>gi|133919188|emb|CAL29642.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium elkanii]
          Length = 180

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 68/187 (36%), Gaps = 17/187 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I     V   A GS L   G+T  +   TL           +  T   
Sbjct: 7   RIDGRDAKTVRNIIAEAGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDALSGTYKE 66

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      ++  RA+  V+         I +  +
Sbjct: 67  TFLLHYNFPPYSVGETGRLGGTKRREIGHG----KLAWRAIHPVLPPHHEFPYTIRVVSE 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA ++L D    ++  +    +  +L+G   A+         + D+
Sbjct: 123 ITESNGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGQRFAV---------LSDI 173

Query: 178 DYGEDST 184
              ED  
Sbjct: 174 LGDEDHH 180


>gi|114595912|ref|XP_001154097.1| PREDICTED: exosome component 9 isoform 5 [Pan troglodytes]
          Length = 363

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S        Y +VD +  E+  +D      M     I  +Q S       +D       
Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSK 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  ++A++ +L    + N+
Sbjct: 253 IAGVKVAEITELILKALEND 272


>gi|321458150|gb|EFX69223.1| hypothetical protein DAPPUDRAFT_301019 [Daphnia pulex]
          Length = 276

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 88/259 (33%), Gaps = 26/259 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R+++L       A+GS +VK G+T ++     E   P        G+I  
Sbjct: 23  RPDGRKLLEFRKMTLNAGSIGTADGSAIVKCGNTTVICGIKAELAAP-EREEPSKGFIIP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV--DLSALGSR------QII 113
              +    +         SG  G  +Q   + I   + + +  DL  L  +       + 
Sbjct: 82  NVTLPSLCSSQ-----IKSGPPGETAQAATQFIAELVNNNIIMDLETLCIKVSKWAWVLH 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHME--DCSNKFQLSQV--------LKGHVAA 163
            D   I  DG    A +     AL +    +   D      +S          +K  V +
Sbjct: 137 CDLLCINLDGSLLDACVMALVAALKNLKLPIVSYDEEMDKLISNPDEKMGFDTIKQPVTS 196

Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
                  G  I D  + E+       +  M  +  +  +       T  +     ++  +
Sbjct: 197 TFSLFDNGILISDPTFEEEQLAAGLTSITMEGT-SVTHMYKPG-GCTLDEKQVKKLIQQS 254

Query: 224 KDRIADLIKLQKDVISNEV 242
           + +  ++ +L ++  S+ +
Sbjct: 255 ELKTKEVARLIEEACSSSI 273


>gi|307214871|gb|EFN89739.1| Exosome complex exonuclease RRP45 [Harpegnathos saltator]
          Length = 390

 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 86/261 (32%), Gaps = 29/261 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR+  + R + +    +    G C+V  G T  +   + + + P  I     G I  
Sbjct: 23  RLDGRRLLEARSVKIHFGSNW---GCCMVSLGHTKAIAQVSCDIQQPK-ISRPNEGMIHI 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------II 113
              +   +  N       SGRQ   +  I R + +  +    VDL +L          I 
Sbjct: 79  NVELSQLAAQN-----FESGRQSEAAVMISRQLEKCFKDSKCVDLESLCIVADKKVWNIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-----------LKGHVA 162
           +D ++I  DG     A      AL    +     + +  +                  V 
Sbjct: 134 VDINIINHDGNLIDCASIATLAALSHFHRPDVTSTGEEIIIHPASEKDFLSLTLFHYPVC 193

Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFS-QDHFFAMLN 221
                   G  I+D  Y E+          +     +  +       T S +D   A+ N
Sbjct: 194 ISFITFESGNTIMDPTYIEERIGVARLTLGVNSYKELCSLNFDYLTKTMSVKDVISAVSN 253

Query: 222 LAKDRIADLIKLQKDVISNEV 242
            A    A L++  K+ ++N +
Sbjct: 254 HAATYAAKLVQQIKETVTNNI 274


>gi|157114354|ref|XP_001658056.1| hypothetical protein AaeL_AAEL006819 [Aedes aegypti]
 gi|108877318|gb|EAT41543.1| conserved hypothetical protein [Aedes aegypti]
          Length = 217

 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 84/239 (35%), Gaps = 38/239 (15%)

Query: 9   NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
           N +R +     +   ++GS ++  G+T ++ +     +V +   N +   I   +     
Sbjct: 8   NSLRPMHCELNLLTRSDGSAMLTQGETAVVASVNGPIEVKLQHMNVEKSHIDIYF----- 62

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 K  +  G    R  E   +I     S +         I I    +Q  GG    
Sbjct: 63  ------KPRSGMGSVNDRLLES--LIKNTYESAILTGLHPRTAISIQLQEMQDQGGLVAC 114

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI-SCGMLCGYPIVDLDYGEDSTIDV 187
           AI    +AL +    M             K  VAA+ S     G  ++D D  +      
Sbjct: 115 AINAVCLALMNSGIEM-------------KFLVAAVHSVLREDGDIVLDPDALQSKDARA 161

Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRI-------ADLIKLQKDVI 238
              FV  + + + V +        F+ + +   L +A++ +       AD++  Q++V+
Sbjct: 162 KFTFVFENCTRNTVSI---YTHGKFTTEQYHRALKMAEEAVEKVFGFYADIVGKQREVL 217


>gi|322828940|gb|EFZ32541.1| exosome-associated protein 4, putative [Trypanosoma cruzi]
          Length = 259

 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 76/231 (32%), Gaps = 26/231 (11%)

Query: 2   RLSGR-QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           R  GR   + +R   +   V      S  V+ G+T ++      ++ V  +  +      
Sbjct: 33  RNGGREAPDGVRYPHIALDVLGQCHSSACVELGNTRVICAVHHPQQLVDEYRGSRGRVAC 92

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           T        S      + +V   +    +++   +      VV L  +    + +  +++
Sbjct: 93  TVRRSASAGSHAAGSAQPSVVTPE----KDMSLALEGVAEEVVILEKIPQLLVEVVVEIL 148

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
             DGG   A  T    AL      M D               A  S  +  G  ++D D 
Sbjct: 149 AEDGGVWDAVATSMSAALVSGGFEMYDL------------FSACGSALLSDGAVVLDPDA 196

Query: 180 GEDSTIDVDANF-VMTDSGHIVEV--QGSAERATFSQDHFFAMLNLAKDRI 227
            E+S     A   VM +SG I     QGS E  T        +++ A    
Sbjct: 197 AEESNAQASALVCVMLNSGDICYARHQGSCEPGT-----VLELVSSAMKGC 242


>gi|83283957|gb|ABC01886.1| 3'-5'-exoribonuclease/RNA binding protein-like protein [Solanum
           tuberosum]
          Length = 314

 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 87/270 (32%), Gaps = 36/270 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R+    R+ +L       A+GS L K G T +L    +E   P  +     G I 
Sbjct: 36  VRPDARKLGSARDTTLALGAVASADGSALAKIGSTTMLAAIKMEVMTPT-VECPDEGSIA 94

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALG------SRQI 112
            E+ M P  +          GR    +  I + +   +    ++DL  L       +   
Sbjct: 95  IEFHMPPICSP-----LVRPGRPAEAASVISKQLSDTILSSGMIDLKELCLVGGKAAWMA 149

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHM-------------EDCSNKFQLSQV--- 156
            +D   + ADG     A+  A  A       +             ED        +    
Sbjct: 150 YLDIYCLDADGALFDTALLSAVAAFSHLNIPVVSLNDDGRIVLVSEDTVRLKLEKEPVNT 209

Query: 157 ------LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERAT 210
                 L     +++C +   Y + D    E+  ++     V+  S  +V +        
Sbjct: 210 EKRKLKLNSLPFSLTCILHKNYILADPTAEEEPIMETIVTVVLDSSHQLVSLNKPGGPVL 269

Query: 211 FSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                    + LA+ R  +L  +  + IS+
Sbjct: 270 SHTSVIQDCIGLARRRAKELQSVLNEAISD 299


>gi|238063392|ref|ZP_04608101.1| polyribonucleotide nucleotidyltransferase [Micromonospora sp. ATCC
           39149]
 gi|237885203|gb|EEP74031.1| polyribonucleotide nucleotidyltransferase [Micromonospora sp. ATCC
           39149]
          Length = 548

 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 75/217 (34%), Gaps = 30/217 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R +S    V     GS L + G+T +L   TL     E+    +   K 
Sbjct: 340 VRIDGRGPRDIRPLSAEVGVLPRVHGSALFERGETQILGVTTLNMLRMEQSLDTLSPEKS 399

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 400 KRYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALIPVLPAREEFPYAIRQVS 455

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
           + + ++G T   ++  + + L                   LK  VA I+ G++       
Sbjct: 456 EALGSNGSTSMGSVCASTLGLLSAGV-------------PLKAPVAGIAMGLISDEVDGK 502

Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
                + D+   ED+  D+D     T    +  +Q  
Sbjct: 503 TQYVTLTDILGAEDAFGDMDFKVAGTRDF-VTALQLD 538



 Score = 71.7 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 78/242 (32%), Gaps = 38/242 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           REI+ +   +++ A GS + + G+T +L+  T     +E+   +             G +
Sbjct: 23  REITFSTGRLARQAAGSVVAQLGETVVLSATTAGKQPKEQFDFFPLTVDVEERMYAAGRI 82

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+  +RE   GR    +    R+I R LR           Q++     +       
Sbjct: 83  P---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFVKGLRNEVQVVETILALDPQHPYD 136

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI  A ++                      G + A     + G  +    + E +   
Sbjct: 137 VVAINAASMS-------------TKLSGLPFSGPIGATRMAHVDGQWVAFPTHEELARAT 183

Query: 187 VDANFV----MTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
            D              I+ V+  A   T           +++   + L  AK  I +L +
Sbjct: 184 FDMVVAGRALADGDVAIMMVEAEATEHTVKLVADGAPAPTEEVVASGLEAAKPAIRELCR 243

Query: 233 LQ 234
            Q
Sbjct: 244 AQ 245


>gi|133918797|emb|CAL29603.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
 gi|133918799|emb|CAL29604.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
 gi|133918801|emb|CAL29605.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
          Length = 180

 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 8/175 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     V     GS L   G+T  +  ATL         ++  G    
Sbjct: 7   RIDGRDLETVRPIVSEVGVLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++  +      + +  +
Sbjct: 67  RFMLHYNFPPFSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVVSE 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           + +++G +  A + G  +AL D    +        +  + +    A+   +L   
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDE 177


>gi|17402904|ref|NP_478126.1| exosome complex component MTR3 [Homo sapiens]
 gi|74736141|sp|Q5RKV6|EXOS6_HUMAN RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
           component 6; AltName: Full=mRNA transport regulator 3
           homolog; Short=hMtr3; AltName: Full=p11
 gi|122920912|pdb|2NN6|F Chain F, Structure Of The Human Rna Exosome Composed Of Rrp41,
           Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
 gi|55930874|gb|AAH52252.1| Exosome component 6 [Homo sapiens]
 gi|119572226|gb|EAW51841.1| exosome component 6 [Homo sapiens]
          Length = 272

 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 70/248 (28%), Gaps = 34/248 (13%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---------- 55
           R   ++R +     +   A+GS  ++ G T +L   +   +     R             
Sbjct: 31  RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPA 90

Query: 56  --HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
              G +  ++   P +     +R A  G    R  E+   +  AL   V L      Q+ 
Sbjct: 91  ALRGRLLCDFRRAPFAG---RRRRAPPGGCEER--ELALALQEALEPAVRLGRYPRAQLE 145

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-- 171
           +   +++ DGG+                               +   V      +  G  
Sbjct: 146 VSALLLE-DGGS------------ALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPA 192

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              ++D    E+          +    + V     +     + + +   + L  +    L
Sbjct: 193 PTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLT-ESWAEAVRLGLEGCQRL 251

Query: 231 IKLQKDVI 238
             + +  +
Sbjct: 252 YPVLQQSL 259


>gi|87311731|ref|ZP_01093846.1| polyribonucleotide nucleotidyltransferase [Blastopirellula marina
           DSM 3645]
 gi|87285515|gb|EAQ77434.1| polyribonucleotide nucleotidyltransferase [Blastopirellula marina
           DSM 3645]
          Length = 350

 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 82/233 (35%), Gaps = 30/233 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLL-TTATLE--EKVPMWIRNTKHGWITAEYGMLPRS 69
           +S       K A G+CL ++GDT +L   AT         +     +   TA  G  P  
Sbjct: 15  LSFETGYLAKQAAGACLTQYGDTVVLTAAATGPSRPGTDFFPLTCDYRERTAAAGKFP-- 72

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI--QADGGTRT 127
            G  +KRE   GR   +     R++ R +R +         Q++ +      Q DG    
Sbjct: 73  -GGFIKRE---GRPTTKEILTCRLMDRPIRPMFPKGFRDEVQVMANVLSSDRQNDGDVL- 127

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            A+ GA VAL                S    G +AA+    +    +V   + E    D+
Sbjct: 128 -AMNGAAVAL-------------GLSSLPFDGPLAAVRLAHINDEFVVFPTHEELEESDL 173

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           D          ++ ++G +      +D     +    + I  +  +Q + +  
Sbjct: 174 DLIISGNKE-SVLMIEGFSRE--MPEDIMLKAIETCHEYIKQICDMQLEFLEK 223



 Score = 35.5 bits (81), Expect = 6.8,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 10/27 (37%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSC 28
           R  GR  N +R I     V     GS 
Sbjct: 314 RPDGRDGNTLRAIECKVDVLPRVHGSA 340


>gi|291302562|ref|YP_003513840.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Stackebrandtia nassauensis DSM
           44728]
 gi|290571782|gb|ADD44747.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Stackebrandtia nassauensis DSM
           44728]
          Length = 825

 Score = 86.3 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 89/253 (35%), Gaps = 30/253 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R +S   ++     GS L + G+T ++   TL     E+    +     
Sbjct: 349 VRIDGRGTRDIRPLSAEVKILPRVHGSALFERGETQIMGVTTLNMLRMEQAIDTLSPVSK 408

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RA+  V+         I    
Sbjct: 409 KRYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERAIVPVLPSREEFPYAIRQVS 464

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
           + + ++G T   ++  + ++L                   LK  VA I+ G++       
Sbjct: 465 EALGSNGSTSMGSVCASTMSLMAAGV-------------PLKAPVAGIAMGLISDEVDGK 511

Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                I D+   ED+  D+D     T +  +  +Q   +      D     L+ A D   
Sbjct: 512 TEYVTITDILGAEDAFGDMDFKVAGTRNF-VTALQLDTKLDGIPSDVLAGALSQAYDARQ 570

Query: 229 DLIKLQKDVISNE 241
            ++ +  + I+  
Sbjct: 571 AIMDVMAEAIAEP 583



 Score = 75.1 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 85/230 (36%), Gaps = 10/230 (4%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL-TTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
           REI+ +   ++K A GS LV+ GDT +L TTA  +     +        +        R 
Sbjct: 32  REITFSTGRLAKQAAGSVLVQLGDTVVLSTTAAGKHPKEHFDFFPLTVDVEERMYAAGRI 91

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G+  +RE   GR    +    R+I R LR           Q+I     +         A
Sbjct: 92  PGSFFRRE---GRPSEDAILTCRLIDRGLRPSFIKGLRNEVQVIETVLALDEAHPYDVVA 148

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + GA  +        +      +++ +    VA  +   L      D+          D 
Sbjct: 149 MNGASASTALSGLPCQGPLGSTRVANINGEWVAFPTLEQLE-TATFDMVVTGRVVEGGDV 207

Query: 190 NFVMTDS---GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             +M ++      VE+ G    A  +++   A L  AK  I++L + Q++
Sbjct: 208 AIMMVEAEATDKAVELIGGGSVAP-TEEVVAAGLEAAKPVISELCRAQRE 256


>gi|307111365|gb|EFN59599.1| hypothetical protein CHLNCDRAFT_132993 [Chlorella variabilis]
          Length = 292

 Score = 85.9 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 81/269 (30%), Gaps = 36/269 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GRQ    R +S+       A GS  V+ G+T ++     E   P  +     G +  
Sbjct: 23  RNDGRQREDFRPLSVKLGELAQATGSARVQLGETDVIVGVKAEIGSPD-LDRPDCGRLNF 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS-------VVDLSALGSRQ--- 111
                P ++     R          + E+ R + R++          VDLS L       
Sbjct: 82  AVECSPVASPAFRGRGG-----DELAGELSRALERSMYPGPSGRGGGVDLSLLSIVSGKT 136

Query: 112 ---IIIDCDVIQADGGTRTA-AITGAWVALHDCLQHMEDCSNKFQLSQV----------- 156
              + +D  ++   G    A ++          +  +E    +    +            
Sbjct: 137 CWVLYVDALLLNIGGNLHDAVSVAAKAALADAKIPKVEVQPGEDPTDEPDYEVDDDPSEA 196

Query: 157 ----LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFS 212
               + G    ++   + G+ +VDL   E+          +  +G++             
Sbjct: 197 MRLDVGGMPICVTVSQIGGHCVVDLTAEEELCSSAALQVAVDATGNVCGTTKRRRGG-IE 255

Query: 213 QDHFFAMLNLAKDRIADLIKLQKDVISNE 241
                 M+  A+   A L     + +  +
Sbjct: 256 ASQALEMVEAAQRAAAKLHAALNEALGAQ 284


>gi|184201241|ref|YP_001855448.1| polynucleotide phosphorylase/polyadenylase [Kocuria rhizophila
           DC2201]
 gi|226702657|sp|B2GKI3|PNP_KOCRD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|183581471|dbj|BAG29942.1| guanosine pentaphosphate synthetase/polynucleotide phosphorylase
           [Kocuria rhizophila DC2201]
          Length = 751

 Score = 85.9 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 84/230 (36%), Gaps = 14/230 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R++S    V     GS L + G+T ++   TL     E+    +   KH
Sbjct: 352 VRIDGRGLTDIRQLSAEVDVLPRVHGSALFERGETQIMGVTTLNMLKMEQQIDSLSPVKH 411

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RA+  V+         I    
Sbjct: 412 KRYIHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERAITPVLPSREEFPYAIRQVS 467

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  + +AL++    +        +     G V+    G +    + D
Sbjct: 468 EALGSNGSTSMGSVCASTLALYNAGVPLRAPVAGIAM-----GLVSDTVDGEVQYAALTD 522

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           +   ED+  D+D     T    +  +Q   +          + L  A++ 
Sbjct: 523 ILGAEDALGDMDFKVAGTREF-VTAIQLDTKLDGIPASVLASALTQAREA 571



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 6/146 (4%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLL-TTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
           R +      +++ A GS +V   + T +L  TA  +     +        +        R
Sbjct: 21  RVVRFETGRLARQAAGSAMVYIDEETSMLSATAVGKHPREGFDFFPLTVDVEERMYAAGR 80

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR    +    R+I R LR           Q+++    I  D    T 
Sbjct: 81  IPGSFFRRE---GRPSTDAILTCRLIDRPLRPAFGKGLRNEVQVVVTVMSIAPDEIYNTV 137

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLS 154
           AI  A ++        +      +++
Sbjct: 138 AINAASMSTTLSGMPFQGPVGGVRMA 163


>gi|324513828|gb|ADY45664.1| Exosome complex exonuclease RRP45 [Ascaris suum]
          Length = 419

 Score = 85.9 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 91/262 (34%), Gaps = 32/262 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           +RL GR+ ++ R++ +       AE G+ LV  G T +    T     P   R    G +
Sbjct: 22  VRLDGRKCDEFRDLKVVVG----AEFGTSLVMAGSTKVSAQVTCNIVEPKSARG-NMGAV 76

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSR------Q 111
                M P  +          GR G +  E+ R++    R    VDL AL         Q
Sbjct: 77  EVHVDMSPMGSPT-----HEDGRLGPKGIELTRVLELLCRDCGAVDLEALCLTAYKKVWQ 131

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHV 161
           I +D  ++QADG     A   A  AL    +           +     K  +   +    
Sbjct: 132 IRVDVHILQADGALIDCASVAAITALAHFRRPDVTVLVDSILVHGSDKKAPIPLTVYHMP 191

Query: 162 AAISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
             +S G+       ++D    E   +             +  +  +      ++      
Sbjct: 192 ICVSFGIAPDGEQVVIDPTEREAMCLKGAFVVAANKRHEVCALHQTG-NLLLNEQLIVRC 250

Query: 220 LNLAKDRIADLIKLQKDVISNE 241
           +++A  R  D+ +L   V++++
Sbjct: 251 VDMAIQRAIDVTELISTVLTDD 272


>gi|82793240|ref|XP_727962.1| exonuclease RRP41 [Plasmodium yoelii yoelii str. 17XNL]
 gi|23484066|gb|EAA19527.1| exonuclease RRP41, putative [Plasmodium yoelii yoelii]
          Length = 218

 Score = 85.9 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 87/218 (39%), Gaps = 24/218 (11%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78
            +S  A+G    + G+T +L+      ++    +      I  +  + P +  ++ K++ 
Sbjct: 5   NISNDADGFAFYEIGNTKILSYIQGPTEL---KKTDDKCSIKCDVFLSPFNVYDKRKKKT 61

Query: 79  VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALH 138
                   + EI   I     +++ L    + +I I   +I+ DGG + AAI    +AL 
Sbjct: 62  K----DNITNEISAYIRNICENIILLDLYKNSEINIFLYIIERDGGIKHAAINTCILALI 117

Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM-TDSG 197
           D                 +K  ++A S   L    IVD +  E ++   +   V+  ++ 
Sbjct: 118 DAGIA-------------IKYFISACSVLYLQNKIIVDGNQLEINSGSPELTMVIELNTH 164

Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            I+ ++  AE      D F +M+    D   ++ ++ K
Sbjct: 165 KIILLEFDAE---IPIDIFESMVQTCIDSCINIGRVMK 199


>gi|308801625|ref|XP_003078126.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related
           exoribonucleases (ISS) [Ostreococcus tauri]
 gi|116056577|emb|CAL52866.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related
           exoribonucleases (ISS) [Ostreococcus tauri]
          Length = 378

 Score = 85.9 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 77/243 (31%), Gaps = 30/243 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR    +R   L R     A GS   +   T ++       ++  W      G I 
Sbjct: 128 LRPDGRSREMLRRQRLHRSRVPSASGSAEYRIDGTIVVAAVHGPLRIAPWREAHDRGVID 187

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            E       +  R  + A  GR  G           A+   V+L       + I   V+ 
Sbjct: 188 VELSAPGWMS--RDDQRACEGRLRG-----------AIERCVELRDFPRFGLRISARVVS 234

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
            DG    A +     AL D              +  ++G + A +C +   G  ++D   
Sbjct: 235 DDGNAEAACVNAVCCALIDA-------------NVPMRGLICANACALTREGSMVIDPTK 281

Query: 180 GEDSTIDVDANFVMTDSGH---IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            E++                   + + G +     ++  +   +    D  A ++ +QK 
Sbjct: 282 REETEARAVVRACALSKHREKDEIAIVGCSTTGALTEKEYLDAIAFIVDATAAVVNIQKK 341

Query: 237 VIS 239
            I+
Sbjct: 342 SIA 344


>gi|117928715|ref|YP_873266.1| polynucleotide phosphorylase/polyadenylase [Acidothermus
           cellulolyticus 11B]
 gi|187470956|sp|A0LV20|PNP_ACIC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|117649178|gb|ABK53280.1| Polyribonucleotide nucleotidyltransferase [Acidothermus
           cellulolyticus 11B]
          Length = 782

 Score = 85.9 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 92/255 (36%), Gaps = 34/255 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R ++    +     GS L + G+T +L   T      +E+++      T
Sbjct: 338 VRIDGRGLTDIRPLTAEVGIVPRVHGSALFERGETQIL-GVTTLNMLRMEQQLDTVSPRT 396

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           K  ++   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 397 KKRYMH-HYNFPPYSTGEVGRVGSPKRREIGHG----ALAERALIPVLPSREEFPYAIRQ 451

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP- 173
             + I ++G T   ++  + ++L +                 L+  VA I+ G++     
Sbjct: 452 VSEAIGSNGSTSMGSVCASTLSLLNAGV-------------PLRAPVAGIAMGLISDTVD 498

Query: 174 -------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                  + D+   ED+  D+D     T    +  +Q   +          A L  A++ 
Sbjct: 499 GETHYVTLTDILGAEDAYGDMDFKVAGTRDF-VTALQLDTKLDGIPASVLAAALPQAREA 557

Query: 227 IADLIKLQKDVISNE 241
              ++ +    IS  
Sbjct: 558 RLTILDVMAKAISEP 572



 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 75/244 (30%), Gaps = 38/244 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R +      +++ A GS +   GDT +L+  T      E+   +             G +
Sbjct: 21  RTVRFETGRLARQAGGSAVAYLGDTMVLSATTASKEPREQFDFFPLTVDVEERLYAAGRI 80

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+  +RE   GR    +    R+I R LR           Q+++    +  +    
Sbjct: 81  P---GSFFRRE---GRPSEEAILTCRLIDRPLRPSFVKGLRNEVQVVVTVLAVDPEHLYD 134

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI  A ++                      G +  +    + G  +    Y E     
Sbjct: 135 VVAINAASMSTLLAGL-------------PFSGPIGGVRMAHIDGTWVAFPTYSELERAT 181

Query: 187 VDANF---VMTDSG---HIVEVQGSAERATF--------SQDHFFAMLNLAKDRIADLIK 232
            D      V+ D      +VE + + E            +++     L  AK  I  L  
Sbjct: 182 FDMVVAGRVLPDGDVAIMMVEAEATEETIPLIREGAPAPTEEVVAGGLEAAKPFIRTLCA 241

Query: 233 LQKD 236
            Q +
Sbjct: 242 AQSE 245


>gi|120403341|ref|YP_953170.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           vanbaalenii PYR-1]
 gi|187610302|sp|A1T7L4|PNP_MYCVP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|119956159|gb|ABM13164.1| Polyribonucleotide nucleotidyltransferase [Mycobacterium
           vanbaalenii PYR-1]
          Length = 754

 Score = 85.9 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 87/243 (35%), Gaps = 12/243 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    V   A GS L + G+T ++   T  + V M  +    G  T
Sbjct: 345 FRIDGRGVTDIRALSAEVAVVPRAHGSALFERGETQIM-GVTTLDMVKMAQQIDSLGPET 403

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +      Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 404 SKRYMHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPSVEEFPYAIRQV 459

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            + + ++G T   ++  + ++L +    ++       +  ++   +            + 
Sbjct: 460 SEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMG-LVSDDIEIDGKTERRFVTLT 518

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED+  D+D     T    +  +Q   +            L  AKD    ++++  
Sbjct: 519 DILGAEDAFGDMDFKCAGTKDF-VTALQLDTKLDGIPSQVLAGALAQAKDARITILEVMA 577

Query: 236 DVI 238
           + I
Sbjct: 578 EAI 580



 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 35/127 (27%), Gaps = 16/127 (12%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  +RE   GR    +    R+I R LR           Q+++    +           
Sbjct: 87  GSFFRRE---GRPSTDAILTCRLIDRPLRPSFVSGLRNEIQVVVTVLSLD---------- 133

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
                 L+D L      ++         G V  +   ++ G  +      +      D  
Sbjct: 134 ---PKDLYDVLAINAASASTQISGLPFSGPVGGVRVALIDGQWVAFPTVEQLERAVFDMV 190

Query: 191 FVMTDSG 197
                 G
Sbjct: 191 VAGRKVG 197


>gi|198424385|ref|XP_002127184.1| PREDICTED: similar to Exosome complex exonuclease RRP42 (Ribosomal
           RNA-processing protein 42) (Exosome component 7) (p8)
           [Ciona intestinalis]
          Length = 290

 Score = 85.9 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 81/263 (30%), Gaps = 29/263 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR     R I +   V     GS  ++ G + LL    +E   P   +    G I 
Sbjct: 22  MRNDGRSCEDYRHIEVETGVVSNTHGSSRLRLGSSELLVGVKVELGSPD-PKAPNEGLIH 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR--ALRSVVDLSALGS------RQI 112
                 P +  +   R          S  I  ++ R    +S +DL+ LG         +
Sbjct: 81  FHVDCSPNADPSFQGRGGED-----LSANISCILTRIYCNKSSIDLNTLGIIPHKQCWVV 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH------------ 160
            +D  +++  G    A       ALH+        ++  + +Q +               
Sbjct: 136 HVDVLILECGGNLLDAVSIAVKAALHNTGVPNIQVTDGDEGTQEISLPDDPNDVKFINTV 195

Query: 161 --VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
                ++   +    +VD    E+   +      +T  G    ++      +   +    
Sbjct: 196 NAPVLVTISKVGSRHVVDASSEEELCCNASLVMGVTKRGRTTGMRKMG-GGSLDPESIPE 254

Query: 219 MLNLAKDRIADLIKLQKDVISNE 241
           M+   K+    L      ++  E
Sbjct: 255 MIETGKNIGRQLHISLDKLLKTE 277


>gi|156551918|ref|XP_001607202.1| PREDICTED: similar to SCL75 protein [Nasonia vitripennis]
          Length = 412

 Score = 85.9 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/261 (18%), Positives = 87/261 (33%), Gaps = 29/261 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   + R + +    +    G C+V  G T      + + + P   R    G +  
Sbjct: 23  RIDGRTLLEPRPLKINFGTNW---GCCVVSLGQTRAAAQVSCDIQQPKASR-PNEGMLHV 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113
              + P +      +   SGRQ   +  I R + ++L+    VDL +L          I 
Sbjct: 79  NVELNPLA-----AQHFESGRQSEAAALINRQLEKSLKESRCVDLESLCIVADKKVWNIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK-----------GHVA 162
           +D  +I  DG     A   A  AL    +     + +  +                  V 
Sbjct: 134 VDVSIINHDGNLIDCASIAALAALMHFHRPDVTSTGEEVIIHPFTEKDPLPLTLYHHPVC 193

Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS-AERATFSQDHFFAMLN 221
                   G  +VD  Y E+          +     +  +     E  +   D   ++ N
Sbjct: 194 ISFITFENGKTVVDPSYLEERVGAAILTLGINAYREVCSLYFDYIEYTSLVADVIPSVSN 253

Query: 222 LAKDRIADLIKLQKDVISNEV 242
            A +   +LI+  K+++  +V
Sbjct: 254 FAANYAYELIREIKELVKQDV 274


>gi|229820964|ref|YP_002882490.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Beutenbergia cavernae DSM 12333]
 gi|259534112|sp|C5BWR2|PNP_BEUC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|229566877|gb|ACQ80728.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Beutenbergia cavernae DSM 12333]
          Length = 744

 Score = 85.9 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 86/250 (34%), Gaps = 30/250 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
            R+ GR    +R ++    V     GS L + G+T +L   TL     E+    +     
Sbjct: 339 FRIDGRGLKDIRPLTAEVEVLPRVHGSALFERGETQILGVTTLNMLKMEQQLDTLSPVSR 398

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 399 KRYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPARDEFPYAIRQVS 454

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
           + + ++G T   ++  + +++ +                 L+  VA I+ G++       
Sbjct: 455 EALSSNGSTSMGSVCASTLSMLNAGV-------------PLRAPVAGIAMGLVSDEVDGE 501

Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T    +  +Q   +            L+ A++   
Sbjct: 502 TRYATLTDILGAEDAFGDMDFKVAGTREF-VTAIQLDTKLDGIPASVLAGALSQAREARL 560

Query: 229 DLIKLQKDVI 238
            ++ +  + I
Sbjct: 561 HILDVMAEAI 570



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 71/241 (29%), Gaps = 39/241 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFG-DTHLL----TTATLEEKVPMWIRNTKHGWITAEYGM 65
           R +      ++K A G+ L     DT +L         +E+   +             G 
Sbjct: 21  RTVRFETGRLAKQAAGAVLATLDEDTVVLSTTAAGKHPKEQFDFFPLTVDVEERQYAAGK 80

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR +         Q++     I  D   
Sbjct: 81  IP---GSFFRRE---GRPSTEAILACRLIDRPLRPLFVKGLRNEVQVVETILAIHPDDSY 134

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G V  +   ++ G  +    Y E    
Sbjct: 135 DVLAINAASASTQ-------------ISGLPFSGPVGGVRVALIDGTWVGFPRYSEKERA 181

Query: 186 DVDANF---VMTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIADLI 231
             D      V+ D   I  V+  A    +           +++     L  AK  I  L 
Sbjct: 182 VFDMVVAGRVVGDDVAITMVEAEATDNAWELIKGEGAGAPTEEVVAEGLEAAKPFIRALC 241

Query: 232 K 232
           +
Sbjct: 242 E 242


>gi|291519474|emb|CBK74695.1| polyribonucleotide nucleotidyltransferase [Butyrivibrio
           fibrisolvens 16/4]
          Length = 693

 Score = 85.9 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 74/223 (33%), Gaps = 29/223 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  Q+R ++    +     GS +   G T +    TL         +    ++T 
Sbjct: 311 RPDGREITQIRPLAAEVDIIPRVHGSSMFTRGQTQICDVVTLAPLSEAQKIDGLDAFVTE 370

Query: 62  -----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y     S G          R+ G       +  RAL  V+         I    
Sbjct: 371 KRYMHHYNFPAYSVGETKPSRGPGRREIGHG----ALAERALLPVLPTPEEFPYAIRAVS 426

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----- 171
           +  +++G T  A+   + ++L                   +K  VA ISCG++ G     
Sbjct: 427 ETFESNGSTSMASTCASCMSLMAAGV-------------PIKAMVAGISCGLVTGDTDDD 473

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
              + D+   ED   D+D     T  G I  +Q   +    ++
Sbjct: 474 FVLLTDIQGLEDFFGDMDFKVTGTKEG-ITAIQMDIKIHGLTR 515



 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 72/214 (33%), Gaps = 27/214 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R + +    V+  A G+  +++GDT +L+TAT      + +  +  + +    T   G +
Sbjct: 11  RTLRVDIGRVAAQANGAAFIQYGDTTVLSTATASDKPRDGIDFFPLSVEFEEKTYAVGKI 70

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G   KRE   G+    S    R+I R +R +          +      +       
Sbjct: 71  P---GGFNKRE---GKASENSVLTSRVIDRPMRPLFPKDYRNDVTLNNMVMAVDPQCRPE 124

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+ GA +A                      G  A    GM+ G  IV+    +    D
Sbjct: 125 LVAMLGAAIA-------------TCISDIPFDGPCAMTQMGMIDGEFIVNPSQEQWDKGD 171

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +      T    ++ ++  A      +D     +
Sbjct: 172 LKLTVASTRE-KVIMIEAGANIIP--EDKMIEAI 202


>gi|327276285|ref|XP_003222900.1| PREDICTED: exosome complex exonuclease RRP46-like isoform 1 [Anolis
           carolinensis]
          Length = 223

 Score = 85.5 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 70/225 (31%), Gaps = 33/225 (14%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R I   + +    +GS     GDT +L       +V +                   +T
Sbjct: 16  LRRIVCEQGLLSRPDGSASWMQGDTSVLAGVYGPSEVKVSKEIYDK------------AT 63

Query: 71  GNRVKREAVSGRQG--GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              + R  V G  G   RS+E  +MI +   +VV  +      I I   VI   G    +
Sbjct: 64  LEVMLRPKV-GLPGVYERSRE--QMIKKTCEAVVLGTLHPRSSITIVLQVITDAGSLLAS 120

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDV 187
            +  A + L D    M                   ++C +   G   +D    ++     
Sbjct: 121 CLNAACMGLMDAGLPMGSL-------------FCGVTCALDADGNFTLDPTAKQEKEAQT 167

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
              F +      V    S+ + T S +     +  ++     + +
Sbjct: 168 VLTFAIDSIEKKVL--MSSMKGTCSVEQLQQCVAASQRAADTIFQ 210


>gi|183601888|ref|ZP_02963257.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219682802|ref|YP_002469185.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241190378|ref|YP_002967772.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241195784|ref|YP_002969339.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|254782707|sp|B8DVV8|PNP_BIFA0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|183218773|gb|EDT89415.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219620452|gb|ACL28609.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|240248770|gb|ACS45710.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250338|gb|ACS47277.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|289178101|gb|ADC85347.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium animalis
           subsp. lactis BB-12]
 gi|295793365|gb|ADG32900.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 873

 Score = 85.5 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 87/249 (34%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R +S    V     GS L + G+T +L   TL     E+    +      
Sbjct: 346 RIDGRGLRDIRTLSAEIDVVPRVHGSALFQRGETQILGITTLNMLKMEQQIDALSGPTTK 405

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P STG   +  +   R+ G       +  +A+  V+         I    +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHG----ALAEKAIVPVLPSREEFPYAIRQVSE 461

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            I ++G T   ++  + ++L                   LK  VA I+ G++ G      
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGV-------------PLKAPVAGIAMGLVSGDVDGQH 508

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    I  +Q   +      D     L  A +    
Sbjct: 509 IYKTLTDILGAEDAFGDMDFKVAGTADF-ITALQLDTKLDGIPADVLAGALKQAHEARKT 567

Query: 230 LIKLQKDVI 238
           ++++  + I
Sbjct: 568 ILEVINECI 576



 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 74/247 (29%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   D+ +L      ++ +E    +             G
Sbjct: 21  RTVRFETGRLARQADGAVAAYLDD-DSMVLSTTTAGSSPKENYDFFPLTVDVEEKMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     +  +  
Sbjct: 80  KIP---GSFFRRE---GRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPEDS 133

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  +                      G V  +   ++ G  +    + E   
Sbjct: 134 YDVLALNAASAS-------------TLISGLPFTGPVGGVRLALIDGQWVAFPRWSERER 180

Query: 185 I----DVDANFVMTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIAD 229
                 V    V +    I  ++  A +  +            ++     L  AK  I  
Sbjct: 181 AVFEIVVAGRVVESGDVAIAMIEAGAGKNAWNLIYDEGQQKPDEEVVAGGLEAAKPFIKV 240

Query: 230 LIKLQKD 236
           L   Q +
Sbjct: 241 LCDAQNE 247


>gi|309812542|ref|ZP_07706290.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Dermacoccus sp. Ellin185]
 gi|308433520|gb|EFP57404.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Dermacoccus sp. Ellin185]
          Length = 826

 Score = 85.5 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 84/242 (34%), Gaps = 14/242 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R +S    V     GS + + G+T ++   TL     E+    +     
Sbjct: 341 VRIDGRGLADIRALSAEVEVLPRVHGSAIFERGETQIMGVTTLNMLRMEQQIDSLSPRTR 400

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 401 KRYMHHYNFPPFSTGETGRVGSPKRREIGHG----ALAERALMPVLPTREEFPYAIRQVS 456

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  + ++L +    +        +     G V+A   G      + D
Sbjct: 457 EALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAM-----GLVSAEIDGETQYAALTD 511

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    +  +Q   +            L  A+D    ++ +  +
Sbjct: 512 ILGAEDAFGDMDFKVAGTREF-VTAIQLDTKLDGIPAQVLAGALTQARDARLHILDVMNE 570

Query: 237 VI 238
            I
Sbjct: 571 AI 572



 Score = 58.6 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 79/244 (32%), Gaps = 38/244 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLL---TTAT--LEEKVPMWIRNTKHGWITAEYGM 65
           R +      ++K A G+ +    D   L   TTA+   +E    +         +   G 
Sbjct: 21  RTVRFETGRLAKQANGAVMAYLDDDTCLLSTTTASKQPKEHFDFFPLTVDVEERSYAAGK 80

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q++I       D   
Sbjct: 81  IP---GSFFRRE---GRPSTDAILTCRLIDRPLRPAFKKGLRNEVQVVITVLAQNPDVQY 134

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI GA  +                      G +  +   ++ G  +   ++ +    
Sbjct: 135 DVLAINGASASTQ-------------ISGLPFTGPIGGVRISLIDGQWVAFPNFSDIERS 181

Query: 186 DVDANF---VMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
             D      ++ D   I+ V+  +  +T+          +++     L  AK  I  L +
Sbjct: 182 AFDMVVAGRIVGDDVAIMMVEAESTESTWNLVKNGTQAPTEEVVAEGLEAAKKFIRVLCE 241

Query: 233 LQKD 236
            Q +
Sbjct: 242 AQME 245


>gi|72161188|ref|YP_288845.1| polynucleotide phosphorylase/polyadenylase [Thermobifida fusca YX]
 gi|123629954|sp|Q47RU5|PNP_THEFY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|71914920|gb|AAZ54822.1| polyribonucleotide nucleotidyltransferase [Thermobifida fusca YX]
          Length = 767

 Score = 85.5 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 89/249 (35%), Gaps = 26/249 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R ++    V     GS L + G+T +L   TL     E+    +   + 
Sbjct: 337 VRIDGRGVKDIRSLTAEVNVIPRVHGSALFERGETQILGITTLNMLRMEQTIDTLNPERT 396

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  A   R+ G       +  RAL  V+         I    
Sbjct: 397 KRYMHNYNFPPYSTGETGRVGAPKRREIGHG----ALAERALVPVLPSREEFPYAIRQVS 452

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGYPI 174
           + I ++G T   ++  + ++L                   LK  VA I+ G++   G  +
Sbjct: 453 EAIGSNGSTSMGSVCASTMSLMAAGV-------------PLKDMVAGIAMGLIYEDGKYV 499

Query: 175 --VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
              D+   ED+  D+D     T    I  +Q   +      +   + L  A+     ++ 
Sbjct: 500 TLTDILGAEDAYGDMDFKVAGTRDL-ITALQLDTKLDGIPAEVLASALQQARGARLAILD 558

Query: 233 LQKDVISNE 241
           +  + I+  
Sbjct: 559 VMSEAINRP 567



 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 73/246 (29%), Gaps = 39/246 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTATL----EEKVPMWIRNTKHGWITAEYGM 65
           R I      +++ A GS      D T +L+  T+    +E +  +             G 
Sbjct: 19  RTIRFETGRLARQATGSATAYLDDETMVLSATTVSKRPKEALDFFPLTVDVEERMYAAGR 78

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           QI+     +  D   
Sbjct: 79  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFQKGLRNEIQIVATVLALHPDHLY 132

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A ++                      G +  +   ++ G  +    + E +  
Sbjct: 133 DVIAINAASMSTQLAGL-------------PFSGPIGGVRVALVEGQWVAFPTHSELANA 179

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATFS----------QDHFFAMLNLAKDRIADLI 231
             D              I+ V+  +   T            +      L  AK  I  L 
Sbjct: 180 TFDMVVAGRVLDNGDVAIMMVEAESTPHTLRLVAEGAIGPNEQTVAEGLEAAKPFIKVLC 239

Query: 232 KLQKDV 237
           + Q+ V
Sbjct: 240 RAQQTV 245


>gi|256379820|ref|YP_003103480.1| polynucleotide phosphorylase/polyadenylase [Actinosynnema mirum DSM
           43827]
 gi|255924123|gb|ACU39634.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Actinosynnema mirum DSM 43827]
          Length = 747

 Score = 85.5 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 93/244 (38%), Gaps = 18/244 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R +     +     GS L + G+T +L   T      +E+++      T
Sbjct: 338 VRIDGRGLTDIRSLGAEVAIIPRTHGSALFERGETQIL-GVTTLNMLRMEQQIDSLSPET 396

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              ++   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 397 HKRYLH-HYNFPPYSTGETGRVGSPKRREIGHG----ALAERALMPVLPKRDEFPYAIRQ 451

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             + + ++G T   ++  + ++L +    +     K  +S +  G V+    G      +
Sbjct: 452 VSEALGSNGSTSMGSVCASTMSLLNAGVPL-----KAPVSGIAMGLVSDEVDGKTEYVAL 506

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED+  D+D     T    +  +Q   +      +   + L+ A+D    ++++ 
Sbjct: 507 TDILGAEDAFGDMDFKVAGTKQF-VTALQLDTKLDGIPSEVLASALSQARDARLAILEVM 565

Query: 235 KDVI 238
            + I
Sbjct: 566 AEAI 569



 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 69/221 (31%), Gaps = 27/221 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM--LPR 68
           R I      +++ A GS +    D  +L +AT   K P    +     +  E  M    R
Sbjct: 21  RTIRFETGHLARQAAGSVVAYLDDETMLLSATTASKAPKEHFDFFPLTVDVEERMYAAGR 80

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ-ADGGTRT 127
             G+  +RE   GR    +    R+I R LR           Q++I    +  AD     
Sbjct: 81  IPGSFFRRE---GRPSTDAILTCRLIDRPLRPSFVDGLRNEIQVVITVMSLNPAD----- 132

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                    L+D +      ++         G +  +   ++ G  +    + +      
Sbjct: 133 ---------LYDVVAINAASASTQLAGLPFSGPIGGVRVALIEGQWVAFPTHEQLENAVF 183

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
           D        G  V +      AT        +++L  +   
Sbjct: 184 DMVVAGRVVGDDVAIMMVEAEAT------EKVIDLIGEGAQ 218


>gi|156093968|ref|XP_001613022.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148801896|gb|EDL43295.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 271

 Score = 85.5 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 89/248 (35%), Gaps = 28/248 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R++ R+ N++R++ +      Y++ SC    G+T +L      +               A
Sbjct: 32  RINNRKNNEIRDMFIKLGSDGYSDASCFYSLGNTKILALIYGPKP----------DSKNA 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            Y         R       G      + I+ ++   + SV+ L       I I C +IQ 
Sbjct: 82  TYDKGKVFLEIRSLNMNDDGANDESDENIKNLLIECVSSVILLDQYPQCSINIKCLIIQN 141

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD--- 178
           DGG  +A +T   +AL +    M D      ++ ++  +   +       + +VD+D   
Sbjct: 142 DGGCLSATLTCISLALTNAQIKMRDIIVSVNVNSIICPNTKRV-------FHLVDVDSLV 194

Query: 179 YGEDST--IDVDANFVMTD----SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
             E+       D N +          +    GS    +F+      +++ A+     L  
Sbjct: 195 NTEEKYYGGKYDTNSITLGICLNLRTVCFFHGSG--NSFNSKTLSEIISYAECACRSLGC 252

Query: 233 LQKDVISN 240
             K V+ N
Sbjct: 253 EIKTVLKN 260


>gi|313608979|gb|EFR84725.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
           FSL F2-208]
          Length = 184

 Score = 85.5 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 23/187 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATL---EEKVPMWIRNTKHGWITAEYGMLPRS 69
           +S+    ++K A G+ L+++GDT +LT A           +     +       G +P  
Sbjct: 16  LSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTVNYEEKMYSVGKVP-- 73

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
            G  +KRE   GR   R+    R+I R +R +         QI      +  D     AA
Sbjct: 74  -GGFLKRE---GRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           + G+ VAL                    +G +A +  G + G  +++    +    D+  
Sbjct: 130 MLGSSVALV-------------ISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISL 176

Query: 190 NFVMTDS 196
               T  
Sbjct: 177 TVAGTYD 183


>gi|320167933|gb|EFW44832.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 229

 Score = 85.5 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 66/200 (33%), Gaps = 21/200 (10%)

Query: 16  LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM---WIRNTKHGWITAEYGMLPRSTGN 72
           ++     +A GS  ++   T ++       +        +  +   +  +    P ++  
Sbjct: 1   MSTGTVSHANGSAYLELAGTRVMAAVYGPRENTRAGGLQQFNEQAVLQCDVARAPFASPR 60

Query: 73  RVKREAVSGRQGGRSQEIQ--RMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
              R          + + Q    +  AL+S V L       I +   +I  DGG   AAI
Sbjct: 61  DDARIGTDANTSAAAADRQFATSVATALQSSVRLEKYAKSSIDLFVTIIGDDGGALAAAI 120

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV--DLDYGEDSTIDVD 188
               +AL D    M D              V A S  +     IV  D  + E+S     
Sbjct: 121 NCCTLALADAGIEMND-------------MVTAASVALAANTNIVLWDPTHLEESRASAI 167

Query: 189 ANFVMTDSGHIV-EVQGSAE 207
           A   +  S ++V  +  S E
Sbjct: 168 ATQALRVSDNLVTLLDQSGE 187


>gi|133918807|emb|CAL29608.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium
           xinjiangense]
 gi|133918809|emb|CAL29609.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium
           xinjiangense]
 gi|133918811|emb|CAL29610.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii]
 gi|133918813|emb|CAL29611.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii]
 gi|133918815|emb|CAL29612.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii]
 gi|133918817|emb|CAL29613.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii]
          Length = 180

 Score = 85.5 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 67/190 (35%), Gaps = 25/190 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 7   RIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++  +      + +  +
Sbjct: 67  RFMLHYNFPPFSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVVSE 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----P 173
           + +++G +  A + G  +AL D    +                VA I+ G++        
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAK-------------PVAGIAMGLIKEEDRFAV 169

Query: 174 IVDLDYGEDS 183
           + D+   ED 
Sbjct: 170 LSDILGDEDH 179


>gi|323191874|gb|EFZ77122.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
          Length = 499

 Score = 85.5 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 78/193 (40%), Gaps = 27/193 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 325 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 384

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV-DLSALGSRQIIIDC 116
                Y   P S G      +   R+ G      R+  R + +V+ D+       + +  
Sbjct: 385 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRGVLAVMPDMDKFP-YTVRVVS 439

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYP 173
           ++ +++G +  A++ GA +AL D                 +K  VA I+ G++     Y 
Sbjct: 440 EITESNGSSSMASVCGASLALMDAGV-------------PIKAAVAGIAMGLVKEGDNYV 486

Query: 174 IV-DLDYGEDSTI 185
           ++ D+   ED   
Sbjct: 487 VLSDILGDEDHLG 499



 Score = 68.2 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 75/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 26  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 82

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 83  IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 139

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 140 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 186

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I  +  L K+ 
Sbjct: 187 LVVAGTEAAVLMV---ESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEA 236


>gi|291234442|ref|XP_002737157.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 560

 Score = 85.1 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 76/212 (35%), Gaps = 35/212 (16%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R+IS    + K   GS L + G T +L T T +        + +   I  
Sbjct: 365 RCDGRSLTALRDISCEVDMYKPLHGSALFQRGQTQVLCTVTFDSIDSALKGDALSEIISG 424

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T   V R   S R+ G       +  +AL+ V+         I 
Sbjct: 425 IKEKNFLLHYEFPPFATNE-VGRMFASRRELGHG----ALAEKALKPVIP-KKFP-FTIR 477

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +  +V++++G   TAA+ G  + L   +   ED +                         
Sbjct: 478 LTSEVLESNGVPITAAVAGVAIGL---VAKTEDDNRSNITDY----------------RL 518

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
           + D+   ED   D+D     T  G I  +Q +
Sbjct: 519 MTDILGIEDYMGDMDFKMAGTKKG-ITALQVT 549



 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 81/226 (35%), Gaps = 30/226 (13%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNT-KHGWITAEYGMLP 67
            + L+     ++A+G  + + G+T ++ TA   T       ++  T       A  G +P
Sbjct: 61  PLKLSTGKLARFADGCAIAQIGETSVMVTAISKTTPSASSSFLPLTVDFRQKAAAAGRIP 120

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
            +   R +R               R+I R++R +     +   QII +C  +        
Sbjct: 121 MN-HLRRERG-----PTDFEILTSRVIDRSIRPLFPQGYVFDSQIICNCLAVDGINDPDI 174

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            +I  A  AL                     G V A+  G++ G  IV+    E   I  
Sbjct: 175 LSINAASAALS-------------LSDIPWNGPVGAVRMGLIDGKFIVNPTRLE--LIKS 219

Query: 188 DANFVMTDSGH--IVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             N ++T S    IV ++GSAE     Q  F   + L       +I
Sbjct: 220 KLNLIVTGSKKSSIVMLEGSAENIL--QPEFCKAIKLGIKETNQII 263


>gi|310288093|ref|YP_003939352.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium bifidum
           S17]
 gi|309252030|gb|ADO53778.1| Polyribonucleotide nucleotidyltransferase [Bifidobacterium bifidum
           S17]
          Length = 887

 Score = 85.1 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 87/249 (34%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R +S    +     GS L + G+T +L   TL     E+    +   +  
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P STG   +  +   R+ G       +  +A+  V+         I    +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHG----ALAEKAIVPVLPSREEFPYAIRQVSE 461

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            I ++G T   ++  + ++L                   LK  VA I+ G++ G      
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGV-------------PLKAPVAGIAMGLVSGDVDGQH 508

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    I  +Q   +      D     L  A +    
Sbjct: 509 VFKTLTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAGALQQAHEARTT 567

Query: 230 LIKLQKDVI 238
           ++ L  + I
Sbjct: 568 ILDLINECI 576



 Score = 53.6 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 76/247 (30%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   D+ +L      ++ +E    +             G
Sbjct: 21  RTLRFETGRLAQQADGAVAAYLDD-DSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     I  D  
Sbjct: 80  KIP---GSFFRRE---GRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLSIDPDDA 133

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  +                     +G V+ +   ++ G  +    + E   
Sbjct: 134 YDVIALNAASAS-------------TMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER 180

Query: 185 I----DVDANFVMTDSGHIVEVQGSAERATFS-----------QDHFFAMLNLAKDRIAD 229
                 V    +      I  ++  A +  +            ++     L  AK  I  
Sbjct: 181 AVFEIVVAGRVIENGDVAIAMIEAGAGKNAWHLIYDEGQIKPDEEVVAQGLEAAKPFIKV 240

Query: 230 LIKLQKD 236
           + + Q +
Sbjct: 241 ICEAQNE 247


>gi|311064966|ref|YP_003971692.1| polyribonucleotide nucleotidyltransferase [Bifidobacterium bifidum
           PRL2010]
 gi|310867286|gb|ADP36655.1| Pnp Polyribonucleotide nucleotidyltransferase [Bifidobacterium
           bifidum PRL2010]
          Length = 887

 Score = 85.1 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 87/249 (34%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R +S    +     GS L + G+T +L   TL     E+    +   +  
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P STG   +  +   R+ G       +  +A+  V+         I    +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHG----ALAEKAIVPVLPSREEFPYAIRQVSE 461

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            I ++G T   ++  + ++L                   LK  VA I+ G++ G      
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGV-------------PLKAPVAGIAMGLVSGDVDGQH 508

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    I  +Q   +      D     L  A +    
Sbjct: 509 VFKTLTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAGALQQAHEARTT 567

Query: 230 LIKLQKDVI 238
           ++ L  + I
Sbjct: 568 ILDLINECI 576



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 76/247 (30%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   D+ +L      ++ +E    +             G
Sbjct: 21  RTLRFETGRLAQQADGAVAAYLDD-DSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     I  D  
Sbjct: 80  KIP---GSFFRRE---GRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLSIDPDDA 133

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  +                     +G V+ +   ++ G  +    + E   
Sbjct: 134 YDVIALNAASAS-------------TMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER 180

Query: 185 I----DVDANFVMTDSGHIVEVQGSAERATFS-----------QDHFFAMLNLAKDRIAD 229
                 V    +      I  ++  A +  +            ++     L  AK  I  
Sbjct: 181 AVFEIVVAGRVIENGDVAIAMIEAGAGKNAWHLIYDEGQIKPDEEVVAQGLEAAKPFIKV 240

Query: 230 LIKLQKD 236
           + + Q +
Sbjct: 241 ICEAQNE 247


>gi|145344813|ref|XP_001416919.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577145|gb|ABO95212.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 260

 Score = 85.1 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 77/243 (31%), Gaps = 30/243 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR    +R   L R     A GS       T ++ T    +KV  W    + G + 
Sbjct: 7   LRGDGRSSEMLRRQRLHRHYVAGAHGSAEYAIDGTIVVATVHGPQKVKPWREEVERGIV- 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            E+ +   S   R +  A   R  G           A+ + V         +     ++ 
Sbjct: 66  -EFELTSASGMTREEERACEARVRG-----------AIEATVVRYDFPRLGLRATARIVS 113

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDY 179
            DG    A +     AL D    M              G + A +C +L  G  ++D   
Sbjct: 114 DDGNAEAACVNALCCALIDADVAM-------------HGLICANACAILSDGTKVIDPTK 160

Query: 180 GEDSTIDV---DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            E++                   + + G +     +++ +   +    D  A ++  QK 
Sbjct: 161 REENEARAVVRACALSKYREKEEIAIVGCSTTGALTEEEYLESIAFIVDATASVVNFQKK 220

Query: 237 VIS 239
            I+
Sbjct: 221 SIA 223


>gi|317508352|ref|ZP_07966026.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Segniliparus rugosus ATCC
           BAA-974]
 gi|316253350|gb|EFV12746.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Segniliparus rugosus ATCC
           BAA-974]
          Length = 731

 Score = 85.1 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 92/254 (36%), Gaps = 32/254 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTK 55
            R+ GR   ++R +S+         GS L + G+T +L   TL+     ++V      TK
Sbjct: 341 FRIDGRGLREIRPLSVEISPIPRVHGSALFQRGETQILGVTTLDLLKMAQEVDALGPVTK 400

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P STG   +  +   R+ G       +  RAL  V+   A     I   
Sbjct: 401 RHYMH-HYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPDQADFPYAIRQV 455

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            + + ++G T   ++  + ++L                   +K  VA I+ G++ G    
Sbjct: 456 SEALGSNGSTSMGSVCASTMSLLAAGV-------------PIKAPVAGIAMGLVSGEVNG 502

Query: 174 ------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                 + D+   ED+  D+D     T    +  +Q   +            L  AK+  
Sbjct: 503 ETKYVTLTDILGAEDAFGDMDFKVAGTRDF-VTALQLDTKLDGIPSQVLAGALAQAKEAR 561

Query: 228 ADLIKLQKDVISNE 241
             ++ +  D I   
Sbjct: 562 DTILDVIADAIDEP 575



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 78/236 (33%), Gaps = 16/236 (6%)

Query: 12  REISLTRRVS-KYAEGSCLVKFG-DTHLLTTATLEEKVPMWIRNTKHGWITAEYGM--LP 67
           R +        + A GS       DT +L +AT     P    +     +  E  M    
Sbjct: 23  RTVKFQTGKLAQQAAGSVFASLDEDTTVL-SATTYSSQPKSQFDFFPLTVDVEERMYAAG 81

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
           R  G+  +RE   GR    +    R+I R LR           QI++    +  +     
Sbjct: 82  RIPGSFFRRE---GRPSTEAILACRLIDRPLRPSFVDGLRNEVQIVVTVLSLNPNALYDV 138

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AI  A  +               +++ +    VA  +   L G  + D+        D 
Sbjct: 139 LAINAASASTRLSGLPFSGPIAGVRVALIGSQWVAFPTVEQLEG-AVFDMVVAGRVLDDG 197

Query: 188 DANFVMTD----SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   +M +       I  ++G A +   +++     L  AK  +  L   Q + ++
Sbjct: 198 DVAVMMVEAEATDHAIKLIEGGATKP--TEEVVAEGLEAAKPFLKQLAIAQ-EALA 250


>gi|311257022|ref|XP_003126922.1| PREDICTED: exosome complex exonuclease MTR3-like [Sus scrofa]
          Length = 254

 Score = 85.1 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 75/245 (30%), Gaps = 46/245 (18%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---------- 55
           R   ++R +     +   A+GS  ++ G T +L   +   +     R             
Sbjct: 31  RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGTGGEAPA 90

Query: 56  --HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
              G +  ++   P S     +R A  G  GG  +E+   +  AL   V L      Q+ 
Sbjct: 91  ALRGRLLCDFRRAPFSG---RRRRAPPG--GGEERELALALQEALEPAVRLGRYPRAQLE 145

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +   +++  G    AA+T A +AL D    M D                           
Sbjct: 146 VSALLLEDGGSALAAALTAAALALADAGIEMYDLVVG----------------------- 182

Query: 174 IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
                  E+         +M     +  + GS E      + +   + L  +    L  +
Sbjct: 183 ----CGXEERAAASLTVALMPVLNQVAGLLGSGEGGP--TESWAEAVRLGLEGCQRLYPV 236

Query: 234 QKDVI 238
            +  +
Sbjct: 237 LQQCL 241


>gi|316977092|gb|EFV60250.1| exosome complex exonuclease MTR3 [Trichinella spiralis]
          Length = 232

 Score = 85.1 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 56/152 (36%), Gaps = 11/152 (7%)

Query: 26  GSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           GS  ++   T +L T     +        M +     G +T      P +   R++R   
Sbjct: 36  GSAYIEMNKTKILCTVIGPREAHKSSEDSMGMLLANCGKLTVSVRFAPFAKTPRLQR--- 92

Query: 80  SGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137
             ++   S+E  +  +I +A  SVV +      +I++   ++Q  G    A++    +AL
Sbjct: 93  RRKEVALSEEQNLATLIQQAFDSVVLVERYPKAEIVLIISILQDSGNVLCASLNCCTMAL 152

Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
                 + D       +   K     ++ G +
Sbjct: 153 VSAGIEIYDLLTSASETLEDKSDNGTLTIGYM 184


>gi|115488270|ref|NP_001066622.1| Os12g0403800 [Oryza sativa Japonica Group]
 gi|108862543|gb|ABA97522.2| 3' exoribonuclease family, domain 1 containing protein, expressed
           [Oryza sativa Japonica Group]
 gi|113649129|dbj|BAF29641.1| Os12g0403800 [Oryza sativa Japonica Group]
 gi|215693833|dbj|BAG89032.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222641114|gb|EEE69246.1| hypothetical protein OsJ_28497 [Oryza sativa Japonica Group]
          Length = 284

 Score = 85.1 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 89/251 (35%), Gaps = 34/251 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+  Q R IS+   V   A GS  V+ G T ++ T   E   P  I +   G ++
Sbjct: 20  LRTDGRRRLQFRAISVETGVIPQANGSARVRLGATEVIATVKAELGKPS-ILHPDKGKVS 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL-------RSVVDLSAL----GS 109
                 P +      R +        S E+   + R L        + +DLS+L    G 
Sbjct: 79  IFVDCSPTAAPMFEGRGSE-----EFSAELCVALQRCLLGGKSGAGAAIDLSSLIVVDGK 133

Query: 110 RQIIIDCD--VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA---- 163
               +  D  V+ +DG    A      VAL D      + S      +  + +V+     
Sbjct: 134 VCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPKVNVSLSATTDEEPEVNVSDEEFL 193

Query: 164 ----------ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
                     ++   +  + IVD    E+S +    +  +   G I  +      A    
Sbjct: 194 QFDTSSVPVIVTLTKVGKHYIVDATSEEESQMSSAVSVSVNRHGQIRGLTKRG-GAGLDP 252

Query: 214 DHFFAMLNLAK 224
              F M+++AK
Sbjct: 253 SVIFDMISVAK 263


>gi|242097164|ref|XP_002439072.1| hypothetical protein SORBIDRAFT_10g031070 [Sorghum bicolor]
 gi|241917295|gb|EER90439.1| hypothetical protein SORBIDRAFT_10g031070 [Sorghum bicolor]
          Length = 286

 Score = 84.8 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 91/260 (35%), Gaps = 34/260 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+  Q R +S+   V   A GS  V+ G T ++ +   E   P  I +   G ++
Sbjct: 20  LRTDGRRRLQFRALSVQTGVIPQANGSARVRLGATEIIASVKAELGKPS-ILHPDKGKVS 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL-------RSVVDLSAL----GS 109
                 P +      R +        S E+   + R L        + +DLS+L    G 
Sbjct: 79  IFVDCSPTAEPMFEGRGSE-----ELSAELSVSLQRCLLGGKSGAGAAIDLSSLIVVEGK 133

Query: 110 RQIIIDCD--VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA---- 163
               +  D  V+ +DG    A      VAL D      + S      +  +  V+     
Sbjct: 134 VCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPKVNVSVNAASDEEPEVDVSDEEFL 193

Query: 164 ----------ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
                     I+   +  + IVD    E+S +    +  +  +G I  +      A    
Sbjct: 194 QFDTSSVPVIITLTKVGRHYIVDATSEEESQMSSAVSVSVNRNGQICGLTKRG-GAGLDP 252

Query: 214 DHFFAMLNLAKDRIADLIKL 233
              F M+++AK      I L
Sbjct: 253 SVIFDMISVAKHVSQQFISL 272


>gi|302837568|ref|XP_002950343.1| hypothetical protein VOLCADRAFT_90878 [Volvox carteri f.
           nagariensis]
 gi|300264348|gb|EFJ48544.1| hypothetical protein VOLCADRAFT_90878 [Volvox carteri f.
           nagariensis]
          Length = 311

 Score = 84.8 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 79/280 (28%), Gaps = 57/280 (20%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR  + MR + L   V   A GS  ++ G T ++    +E   P        G + 
Sbjct: 18  VRLDGRSCHDMRPVELELGVIAQAAGSARLRMGATDVIVGVKVEVGSPSS-SAPNQGRLQ 76

Query: 61  AEYGMLPRSTGNRVKR-EAVSGRQGGRSQEIQRM-IGRA--------------------- 97
                 P ++     R     G Q     E      GRA                     
Sbjct: 77  VTVEFSPCASPIYKGRFGETYGEQIAAVIESSLAPSGRAGGGGGGGVAYDGTLPTAASPH 136

Query: 98  LRSV------------VDLSA---LGSRQ---IIIDCDVIQADGGTRTAAITGAWVALHD 139
           LR              +DLS    L  +    + +D  V+  DG    A       AL  
Sbjct: 137 LRGAPPSSSSGTPGPGLDLSKLCILPGKTAWVLFVDALVLNDDGNVLGAVSAATLAALQH 196

Query: 140 CLQHMEDCSNKFQLSQVL----------KGHVAA----ISCGMLCGYPIVDLDYGEDSTI 185
                 +        + +          +  V+A    ++   +    ++DL   E+   
Sbjct: 197 TRIPKVEAVRDAAGEEEIELDDSPGAAWRLDVSALPLVVTTSRVGSQCVMDLTAQEERCS 256

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
               +  +   G +     S      +      M+  A+ 
Sbjct: 257 TSALHVAVNRKGQLCGTTLSGRTGVET-SMLLMMMETAQK 295


>gi|325180002|emb|CCA14404.1| exosome complex exonuclease RRP43 putative [Albugo laibachii Nc14]
          Length = 293

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 91/256 (35%), Gaps = 21/256 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R  +  R + +   V      S LVK  +T ++T   L    P   + T+ G I 
Sbjct: 36  IRTDARTFDASRSMHIQTNVINSCYSSSLVKLKNTSVITGIQLAVGTPAIDKQTE-GDIV 94

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL----GSRQ--III 114
            +  + P  +  R             S  I ++I RA   ++DL+ L    G     ++I
Sbjct: 95  IQIHLTPLCS-TRFNVGRACEEANAVSSHISKIIRRA--RMIDLTQLSIEKGKSAWNVMI 151

Query: 115 DCDVIQADGGTRTAAITGAWVAL----------HDCLQHMEDCSNKFQLSQVLKGHVAAI 164
           D   I  DG     ++     AL           +    +E  S++     +++  + A 
Sbjct: 152 DVYCIDYDGNIFEVSLMSIMTALQKLRLPATRVSEVDHKVEIDSDEESRPLIMQRVLCAT 211

Query: 165 SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           S  ++  + ++D    E+       N + T    +  V         S       L+ AK
Sbjct: 212 SFAIVNEHVLIDPTSEEEGLASSTFNIIYTTENELFGVYKPG-GTLISPAILKKCLDTAK 270

Query: 225 DRIADLIKLQKDVISN 240
           +R   + K   + +S 
Sbjct: 271 NRTKKVAKQLLESLSQ 286


>gi|302757249|ref|XP_002962048.1| hypothetical protein SELMODRAFT_77552 [Selaginella moellendorffii]
 gi|302775248|ref|XP_002971041.1| hypothetical protein SELMODRAFT_94605 [Selaginella moellendorffii]
 gi|300161023|gb|EFJ27639.1| hypothetical protein SELMODRAFT_94605 [Selaginella moellendorffii]
 gi|300170707|gb|EFJ37308.1| hypothetical protein SELMODRAFT_77552 [Selaginella moellendorffii]
          Length = 377

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 85/278 (30%), Gaps = 56/278 (20%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA--EGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           +R+ GR     R     R +  +A  +G+  V+ G+T +L   + +   P +      G 
Sbjct: 23  LRVDGRAPFDSR-----RSLINFAREDGAVEVQQGETRVLAVVSAQLGTP-YPDRPNEGS 76

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALG---SRQII 113
           +       P +  +        GR G  + E+ R+I R LR    VD  +L     + + 
Sbjct: 77  LVINTEFSPMADPS-----FEPGRPGELAVELGRVIDRGLRESRAVDTESLCVLAGKAVW 131

Query: 114 ---IDCDVIQADGGTRTA----------------AITGAWVALHDCLQHMEDCSNKFQLS 154
              ID  ++   G                        G        +        +  L 
Sbjct: 132 FLRIDIHILDNGGNLIDVANLAALAGLLSFRRPECSIGGADGQDITIHP---PEVREPLP 188

Query: 155 QVLKGHVAAISCG-MLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFS 212
             L     A++ G +  G   ++D    E++ +       +   G +  +Q         
Sbjct: 189 LTLHHLPIAVTFGFLADGELVVLDPSLKEEAVMGGRLTVTVNAHGEVCAIQKGG-GVAVR 247

Query: 213 QDHFFAMLN-----------LAKDRIA--DLIKLQKDV 237
            +     +            L K      ++ + Q+ V
Sbjct: 248 MNEILRCMRIAASKAAETAALLKKGAESHEIERAQRKV 285


>gi|133919190|emb|CAL29643.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium
           japonicum]
          Length = 180

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 66/186 (35%), Gaps = 17/186 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R+ GR    +R I     V   A GS L   G+T  L   TL           +  T   
Sbjct: 7   RIDGRDSKTVRNIIAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDALSGTYKE 66

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +      R+ G      ++  RA+  V+           +  +
Sbjct: 67  TFLLHYNFPPYSVGETGRLGGTKRREIGHG----KLAWRAIHPVLPPHHEFPYTTRVVSE 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           + +++G +  A++ GA +AL D    ++  +    +  +L+    A+         + D+
Sbjct: 123 ITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEDKRFAV---------LSDI 173

Query: 178 DYGEDS 183
              ED 
Sbjct: 174 LGDEDH 179


>gi|258596889|ref|XP_001349602.2| 3' exoribonuclease, putative [Plasmodium falciparum 3D7]
 gi|254688464|gb|AAC71872.3| 3' exoribonuclease, putative [Plasmodium falciparum 3D7]
          Length = 275

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 76/183 (41%), Gaps = 16/183 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R++ R+ N++R++ +     +    SC    G+T +LTT         +   +K G +  
Sbjct: 32  RINNRKNNEIRDMFIKLGEDENFGSSCFYSLGNTKILTTVYGPNPDSKYATYSK-GKVFL 90

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           +   L  +T     R+        R  +I+ ++   + +++ L       I I C +IQ 
Sbjct: 91  DVKSLNINTIGASDRQ--------RDDDIKSLLIECISNIILLEKYPQCSIKIKCLIIQD 142

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
           DGG  +A +T   +AL      M+D      ++ ++      +       Y +VDLD  E
Sbjct: 143 DGGCLSATLTCISLALIKAQIQMKDIIISININSIICPVTKKM-------YHLVDLDGME 195

Query: 182 DST 184
           +  
Sbjct: 196 EKY 198


>gi|325187967|emb|CCA22510.1| exosome complex exonuclease RRP42like protein putati [Albugo
           laibachii Nc14]
          Length = 298

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 84/264 (31%), Gaps = 32/264 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD--THLLTTATLEEKVPMWIRNTKHGW 58
           +R  GR     R + L   +  ++ GS  VK  +  T +L +  LE   P  +     G 
Sbjct: 19  VRADGRSRTSHRNVMLETSLLPHSNGSARVKQQNFGTDVLASVKLEVLSPS-LEAPNSGV 77

Query: 59  ITAEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRS--VVDLSALG--SRQ-- 111
           +       P  +         +GR     + E+ +++ R   S   +DL+       Q  
Sbjct: 78  LNVNVTCFPSISSK-----ITNGRALDEINIELSQLMQRIFTSHKSIDLNKFCIVPSQFV 132

Query: 112 --IIIDCDVIQADGGTRTAAITGAWVALHDCLQH---MEDCSNKFQLSQVLKGHVAA--- 163
             I +D  V ++ G          + AL   L     M       ++ QV +   A    
Sbjct: 133 WGIFVDVVVYESTGSLPDLISIAMYAALKKTLFPCVRMLGVEGDEKILQVERDPAAGEYL 192

Query: 164 ---------ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
                     +   +  Y ++D    E+  +       +   G I  +Q        S D
Sbjct: 193 AATVCFPLCTTICKIGNYSVMDPTLEEELCVSTQNVVALNREGSICGIQKRYGDGAISMD 252

Query: 215 HFFAMLNLAKDRIADLIKLQKDVI 238
               M + A +    L +     I
Sbjct: 253 ELQDMTDQACEHTMALFQRIDKAI 276


>gi|254821343|ref|ZP_05226344.1| polynucleotide phosphorylase/polyadenylase [Mycobacterium
           intracellulare ATCC 13950]
          Length = 744

 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 12/243 (4%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR    +R +S    V   A GS L + G+T +L   T  + V M  +    G  T
Sbjct: 338 FRIDGRGITDIRALSAEVAVVPRAHGSALFQRGETQIL-GVTTLDMVKMAQQIDSLGPET 396

Query: 61  A-----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +      Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 397 SKRYMHHYNFPPFSTGETGRVGSPKRREIGHG----ALAERALIPVLPGVEDFPYAIRQV 452

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            + + ++G T   ++  + ++L +    ++       +  ++   V            + 
Sbjct: 453 SEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMG-LVSDDVEIDGRTERRFVTLT 511

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED+  D+D     T    +  +Q   +            L  AKD    ++++  
Sbjct: 512 DILGAEDAFGDMDFKCAGTKDF-VTALQLDTKLDGIPSQVLAGALGQAKDARLTILEVMA 570

Query: 236 DVI 238
           + I
Sbjct: 571 EAI 573



 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 52/184 (28%), Gaps = 34/184 (18%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  +RE   GR    +    R+I R LR           Q+++    +  +        
Sbjct: 78  GSFFRRE---GRPSTDAILTCRLIDRPLRPSFVSGLRNEIQVVVTVMSLDPN-------- 126

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
                 L+D L      ++         G +  +   ++ G  +      +      D  
Sbjct: 127 -----DLYDVLAINAASASTQLSGLPFSGPIGGVRVALIDGQWVAFPTVEQLERAVFDMV 181

Query: 191 FVMTDSGH--------IVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
                 G         I+ V+  A               ++      L  AK  IA L  
Sbjct: 182 VAGRIVGGGAAEKDIAIMMVEAEATENVIELVEGGAQAPTETVVAEGLEAAKPFIATLCT 241

Query: 233 LQKD 236
            Q++
Sbjct: 242 AQEE 245


>gi|187611321|sp|A9WPX4|PNP_RENSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
          Length = 746

 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 87/250 (34%), Gaps = 30/250 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R+++    V     GS + + G+T ++   TL     E+    +     
Sbjct: 339 IRIDGRGLTDIRQLTAEVEVLPRVHGSAIFERGETQIMGVTTLNMLKMEQQIDSLSPVTR 398

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 399 KRYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPSREEFPYAIRQVS 454

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
           + + ++G T   ++  + ++L +                 LK  VA I+ G++       
Sbjct: 455 EALSSNGSTSMGSVCASTLSLLNAGV-------------PLKAPVAGIAMGLVSDQVDGQ 501

Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T    +  +Q   +          A L  A++   
Sbjct: 502 TRYAALTDILGAEDAFGDMDFKVAGTSEF-VTAIQLDTKLDGIPASVLAAALKQAREARL 560

Query: 229 DLIKLQKDVI 238
            ++ +    I
Sbjct: 561 HILGVLNAAI 570



 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 74/238 (31%), Gaps = 33/238 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM--LPR 68
           R I      +++ A G+ +V   D   L +AT   K P    +     +  E  M    R
Sbjct: 21  RTIRFETGRLAQQAAGAAMVYIDDDTALLSATTAGKQPREGFDFFPLTVDVEERMYAAGR 80

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR    +    R++ R LR           QI++    I  D      
Sbjct: 81  IPGSFFRRE---GRPSTEAILACRLMDRPLRPAFVKGLRNEVQIVVTVLAINPD------ 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
                   L+D +       +         G +  +   ++    +    + E      +
Sbjct: 132 -------ELYDVVAINASSMSTQLSGLPFSGPIGGVRVALIEDQWVAFPRHSEMEKAVFN 184

Query: 189 ANF---VMTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIADLIK 232
                 V  D   I+ V+  A   ++           +++     L  AK  I  L +
Sbjct: 185 MVVAGRVAGDDVAIMMVEAEATDNSWNLIKENGATAPTEEIVSEGLEAAKPFIKALCE 242


>gi|195443592|ref|XP_002069486.1| GK11547 [Drosophila willistoni]
 gi|194165571|gb|EDW80472.1| GK11547 [Drosophila willistoni]
          Length = 237

 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 77/235 (32%), Gaps = 31/235 (13%)

Query: 8   ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLP 67
            +++RE+          +GS +   G T ++       +V     +    ++   Y    
Sbjct: 13  NDKLREMRCEFNPLSRCDGSVMYSQGSTVVIAAVLGPVEVKTQSLSIDGSYLECNY---- 68

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
                R K      ++  R   IQ +    L   V   +    ++ +    ++  G    
Sbjct: 69  -----RPKAGLPQVKERIRESVIQDV----LELAVLGESYPRSKMSVQIQELEDRGSIDA 119

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTID 186
            A+  A +A+      M             K   AA+ C +   G  I+D D  E     
Sbjct: 120 CAVNAACLAMIIGGLPM-------------KYSFAAVQCIINEDGEYILDPDQRETLHQR 166

Query: 187 VDANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
               F      G ++ VQ    + +F    F  +  L +   A++ +  +D I+ 
Sbjct: 167 ASFTFAFDSLEGDLLLVQ---TKGSFKIAQFNDIECLCRSASANIFQFYRDNIAK 218


>gi|224283646|ref|ZP_03646968.1| polynucleotide phosphorylase/polyadenylase [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313140799|ref|ZP_07802992.1| PnpA [Bifidobacterium bifidum NCIMB 41171]
 gi|313133309|gb|EFR50926.1| PnpA [Bifidobacterium bifidum NCIMB 41171]
          Length = 887

 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 87/249 (34%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R +S    +     GS L + G+T +L   TL     E+    +   +  
Sbjct: 346 RIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSK 405

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y M P STG   +  +   R+ G       +  +A+  V+         I    +
Sbjct: 406 RYMHNYEMPPYSTGETGRVGSPKRREIGHG----ALAEKAIVPVLPNREEFPYAIRQVSE 461

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            I ++G T   ++  + ++L                   LK  VA I+ G++ G      
Sbjct: 462 AIGSNGSTSMGSVCASTLSLLAAGV-------------PLKAPVAGIAMGLVSGDVDGQH 508

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    I  +Q   +      D     L  A +    
Sbjct: 509 VFKTLTDILGAEDAFGDMDFKVAGTSEF-ITALQLDTKLDGIPADILAGALQQAHEARTT 567

Query: 230 LIKLQKDVI 238
           ++ L  + I
Sbjct: 568 ILDLINECI 576



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 76/247 (30%), Gaps = 42/247 (17%)

Query: 12  REISLTRR-VSKYAEGSC--LVKFGDTHLL----TTATLEEKVPMWIRNTKHGWITAEYG 64
           R +      +++ A+G+    +   D+ +L      ++ +E    +             G
Sbjct: 21  RTLRFETGRLAQQADGAVAAYLDD-DSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R+I R LR +   +     Q++     I  D  
Sbjct: 80  KIP---GSFFRRE---GRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLSIDPDDA 133

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               A+  A  +                     +G V+ +   ++ G  +    + E   
Sbjct: 134 YDVIALNAASAS-------------TMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER 180

Query: 185 I----DVDANFVMTDSGHIVEVQGSAERATFS-----------QDHFFAMLNLAKDRIAD 229
                 V    +      I  ++  A +  +            ++     L  AK  I  
Sbjct: 181 AVFEIVVAGRVIENGDVAIAMIEAGAGKNAWHLIYDEGQIKPDEEVVAQGLEAAKPFIKV 240

Query: 230 LIKLQKD 236
           + + Q +
Sbjct: 241 ICEAQNE 247


>gi|170781592|ref|YP_001709924.1| polynucleotide phosphorylase/polyadenylase [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|257096675|sp|B0RGW7|PNP_CLAMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|169156160|emb|CAQ01301.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 757

 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 83/242 (34%), Gaps = 14/242 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R +    +V     GS + + G+T +L   TL     E+    +     
Sbjct: 349 IRMDGRGLADIRPLDAEVQVIPRVHGSAIFQRGETQILGVTTLNMLKMEQQIDSLSPVTK 408

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 409 KRFMTHYNFPPYSTGETGRVGSPKRREIGHGF----LAERALVPVLPSREDFPYAIRQVS 464

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  + ++L +    +        +     G V+    G +    + D
Sbjct: 465 EALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAM-----GLVSDTVDGQVRYAALTD 519

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    +  +Q   +            L  AK+    ++ +   
Sbjct: 520 ILGAEDALGDMDFKVAGTSEF-VTAIQLDTKLDGIPTSVLDGALKQAKEARTAILGVLNQ 578

Query: 237 VI 238
            I
Sbjct: 579 AI 580



 Score = 48.5 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 52/170 (30%), Gaps = 16/170 (9%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  +RE   GR    +  + R+I R LR           Q++I    I  D    + AI
Sbjct: 83  GSFFRRE---GRPSTEAILVCRLIDRPLRPSFITGLRNEVQVVITVLSIAPDEFYDSLAI 139

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA---------AISCGMLCGYPIVDLDYGE 181
             A  +               +L+ +    V          A+    + G  + D    E
Sbjct: 140 NAASASSMLSGIPFSGPIAGVRLALIGDQWVVFPKHSQLKEAVFDITVAGRVVTDAQGNE 199

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           D    +         G    +Q  A +    +      L  AK  I  L+
Sbjct: 200 DVA--IMMVEAEATEGAWDLIQAGATKP--DEAVVAQGLEAAKPFIRQLV 245


>gi|163839428|ref|YP_001623833.1| polynucleotide phosphorylase/polyadenylase [Renibacterium
           salmoninarum ATCC 33209]
 gi|162952904|gb|ABY22419.1| polyribonucleotide nucleotidyltransferase [Renibacterium
           salmoninarum ATCC 33209]
          Length = 778

 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 87/250 (34%), Gaps = 30/250 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R+++    V     GS + + G+T ++   TL     E+    +     
Sbjct: 371 IRIDGRGLTDIRQLTAEVEVLPRVHGSAIFERGETQIMGVTTLNMLKMEQQIDSLSPVTR 430

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 431 KRYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPSREEFPYAIRQVS 486

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
           + + ++G T   ++  + ++L +                 LK  VA I+ G++       
Sbjct: 487 EALSSNGSTSMGSVCASTLSLLNAGV-------------PLKAPVAGIAMGLVSDQVDGQ 533

Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T    +  +Q   +          A L  A++   
Sbjct: 534 TRYAALTDILGAEDAFGDMDFKVAGTSEF-VTAIQLDTKLDGIPASVLAAALKQAREARL 592

Query: 229 DLIKLQKDVI 238
            ++ +    I
Sbjct: 593 HILGVLNAAI 602



 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 74/238 (31%), Gaps = 33/238 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM--LPR 68
           R I      +++ A G+ +V   D   L +AT   K P    +     +  E  M    R
Sbjct: 53  RTIRFETGRLAQQAAGAAMVYIDDDTALLSATTAGKQPREGFDFFPLTVDVEERMYAAGR 112

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR    +    R++ R LR           QI++    I  D      
Sbjct: 113 IPGSFFRRE---GRPSTEAILACRLMDRPLRPAFVKGLRNEVQIVVTVLAINPD------ 163

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
                   L+D +       +         G +  +   ++    +    + E      +
Sbjct: 164 -------ELYDVVAINASSMSTQLSGLPFSGPIGGVRVALIEDQWVAFPRHSEMEKAVFN 216

Query: 189 ANF---VMTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIADLIK 232
                 V  D   I+ V+  A   ++           +++     L  AK  I  L +
Sbjct: 217 MVVAGRVAGDDVAIMMVEAEATDNSWNLIKENGATAPTEEIVSEGLEAAKPFIKALCE 274


>gi|296394402|ref|YP_003659286.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Segniliparus rotundus DSM 44985]
 gi|296181549|gb|ADG98455.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Segniliparus rotundus DSM 44985]
          Length = 737

 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 89/254 (35%), Gaps = 32/254 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-----EKVPMWIRNTK 55
            R+ GR    +R +S          GS L + G+T +L   TL+     ++V      +K
Sbjct: 341 FRIDGRGLRDIRPLSAEISPVPRVHGSALFQRGETQILGVTTLDLLKMAQEVDALGPVSK 400

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 401 RHYMH-HYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPSVEEFPYAIRQV 455

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            + + ++G T   ++  + ++L                   +K  VA I+ G++ G    
Sbjct: 456 SEALSSNGSTSMGSVCASTMSLLAAGV-------------PIKAPVAGIAMGLVSGEVNG 502

Query: 174 ------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                 + D+   ED+  D+D     T    +  +Q   +            L  AK+  
Sbjct: 503 ETKYVTLTDILGAEDAFGDMDFKVAGTADF-VTALQLDTKLDGIPSQVLAEALAQAKEAR 561

Query: 228 ADLIKLQKDVISNE 241
             L+ +  + I   
Sbjct: 562 DTLLDVIANAIDEP 575



 Score = 55.9 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 74/238 (31%), Gaps = 20/238 (8%)

Query: 12  REISLTRRVS-KYAEGSCLVKFG-DTHLLTT----ATLEEKVPMWIRNTKHGWITAEYGM 65
           R +        + A GS       DT +L+     A  + +   +             G 
Sbjct: 23  RTVKFQTGKLAQQAAGSVFATLDEDTSVLSATTFSAQPKSQFDFFPLTVDVEERMYAAGR 82

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           QI++    +  +   
Sbjct: 83  IP---GSFFRRE---GRPSTDAILTCRLIDRPLRPSFADGLRNEVQIVVTVLSLNPNAVY 136

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL----DYGE 181
              AI  A  +               +++ +    VA  +   L    + D+       E
Sbjct: 137 DVLAINAASASTRLSGLPFSGPIAGVRVALIGSQWVAFPTVEQLQ-EAVFDMVVAGRVLE 195

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D  + V           I  ++G A +   ++      L  AK  +  L   Q + ++
Sbjct: 196 DGDVAVMMVEAEATDHAIKLIEGGATKP--TEQVVAEGLEAAKPFLKQLAIAQ-EALA 250


>gi|167465303|ref|ZP_02330392.1| ribonuclease PH [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 71

 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 35/55 (63%)

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
             VD N VMT  GH VEVQG+ E + FS+D    ML LA++ I  LI+LQ++ + 
Sbjct: 3   AHVDMNVVMTGRGHFVEVQGTGEESPFSKDDLDRMLGLAEEGILRLIELQREALG 57


>gi|133918803|emb|CAL29606.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
 gi|133918819|emb|CAL29614.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
          Length = 180

 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 62/175 (35%), Gaps = 8/175 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 7   RIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++  +      + +  +
Sbjct: 67  RFMLHYNFPPFSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVVSE 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           + +++G +  A + G  +AL D    +        +  + +    A+   +L   
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDE 177


>gi|12835817|dbj|BAB23374.1| unnamed protein product [Mus musculus]
          Length = 540

 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 61/165 (36%), Gaps = 14/165 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R IS    + K   GS L + G T +L T T +        +++   I  
Sbjct: 358 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 417

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y     +T    K   V+ R+ G       +  +AL  V+         I 
Sbjct: 418 VKDKNFMLHYEFPLYATNETGKVTGVNRRELGHG----ALAEKALCPVIPKDF--PFTIR 471

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK 158
           +  +V++++G +  A+  G  +AL D    +        +  V K
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTK 516



 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 27/203 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPM---WIRNTKHGWITAEYGMLP 67
           R++ ++     ++A+G  +++ GDT ++ TA  + K            +    A  G +P
Sbjct: 54  RKLEISSGKLARFADGCAVIQSGDTAVMVTAVSKTKASPSQFMPLVVDYRQKAAAAGRIP 113

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
               N ++RE  S     R     R+I R++R +         Q++  C+++  DG    
Sbjct: 114 ---TNYLRREIGS---SDREVLTSRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGINEP 165

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              A+ GA VAL                     G V A+  GM+ G  +V+    E S+ 
Sbjct: 166 DILAVNGASVALS-------------LSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSS 212

Query: 186 DVDANFVMTDSGHIVEVQGSAER 208
            ++          IV ++ SAE 
Sbjct: 213 TLNLVVAGAPKSQIVMLEASAEN 235


>gi|311262607|ref|XP_003129265.1| PREDICTED: exosome complex exonuclease RRP45-like [Sus scrofa]
          Length = 414

 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 93/276 (33%), Gaps = 47/276 (17%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIKISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTR-----------------TAAITGAWVALHDCLQH-----MEDCSNKF 151
           +D  ++  DG                      ++ G  V L     +     +     + 
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLPQTGNYPNVHQLVSGKTEC 193

Query: 152 QLSQVL------KGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
            +   L      K     +       Y +VD +  E+  +D      M     I  +Q S
Sbjct: 194 GIPNYLAKYSSKKDQTTDVVYTART-YLLVDPNEREERVMDGLLVIAMNKHREICTIQSS 252

Query: 206 AERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
                  +D       +A  ++ ++ +L +  + N+
Sbjct: 253 G-GIMLLKDQVLRCSKIAGVKVLEITELIQKALEND 287


>gi|125539848|gb|EAY86243.1| hypothetical protein OsI_07612 [Oryza sativa Indica Group]
          Length = 408

 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 88/270 (32%), Gaps = 54/270 (20%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMWIRNTKHGW 58
           +R+ GR+    R + +   +    +GS  V+ GDT ++   TA L   V  +      G 
Sbjct: 25  LRVDGRRPFDFRRLKI---LFGREDGSAEVQLGDTRVMGYATAQL---VQPYKDRPNEGT 78

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSR------ 110
           +       P +           GR G  + E+ R++ R LR    VD+ +L         
Sbjct: 79  LAIFTEFSPMADPA-----FEPGRPGESAIELGRVVDRGLRESRAVDMESLCVVAGKHVW 133

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQH--------------------------- 143
            + +D  ++   G           ++L + +                             
Sbjct: 134 SVRVDLHILDNGGELNV--PDAMVLSLRNLIDAANIAALAALSTFRRPECTVGGEDGQQV 191

Query: 144 -MEDCSNKFQLSQVLKGHVAAISCGMLC--GYPIVDLDYGEDSTIDVDANFVMTDSGHIV 200
            + D   +  L   +     A++          ++D  Y E++ +       +  +G + 
Sbjct: 192 TVHDPEVRDPLPLTIHHLPIAVTFAYFGEGNIMVIDPTYKEEAVMGGRMTATINSNGDVC 251

Query: 201 EVQGSAERATFSQDHFFAMLNLAKDRIADL 230
            +Q +      S       L +A  + AD+
Sbjct: 252 SIQKAGGEGVMS-SVIMQCLRIASVKAADI 280


>gi|284030886|ref|YP_003380817.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Kribbella flavida DSM 17836]
 gi|283810179|gb|ADB32018.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Kribbella flavida DSM 17836]
          Length = 750

 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 90/252 (35%), Gaps = 34/252 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R +    +V     GS L + G+T +L   T      +E+++      T
Sbjct: 345 VRMDGRGLADIRPLKAQVKVLPRVHGSALFERGETQIL-GVTTLNMLRMEQQLDTLSPET 403

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +  ++   Y   P STG   +  +   R+ G       +  RAL  V+         +  
Sbjct: 404 RKRYMH-NYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPSREDFPYALRQ 458

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP- 173
             + + ++G T   ++  + ++L                   LK  VA I+ G++ G   
Sbjct: 459 VSEALGSNGSTSMGSVCASTLSLLSAGV-------------PLKAPVAGIAMGLISGEVD 505

Query: 174 -------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                  + D+   ED+  D+D     T    +  +Q   +            L  AK+ 
Sbjct: 506 GKTEYVALTDILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPASVLAGALTQAKEA 564

Query: 227 IADLIKLQKDVI 238
              ++ +    I
Sbjct: 565 RLTILDVMAKAI 576



 Score = 64.7 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 73/227 (32%), Gaps = 38/227 (16%)

Query: 33  GDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
           GDT +L+  T     +++   +             G +P   G+  +RE   GR    + 
Sbjct: 50  GDTMVLSATTASKKPKDQFDFFPLTVDVEERMYAAGRIP---GSFFRRE---GRPSEEAI 103

Query: 89  EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148
              R+I R LR           Q++I    +  D      AI  A ++            
Sbjct: 104 LTCRLIDRPLRPSFVSGLRNEIQVVITVLALNPDKLYDVLAINAASMSTQIAGL------ 157

Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM--TDSGH--IVEVQG 204
                     G + A    ++    +    + E      D       TDSG   I+ V+ 
Sbjct: 158 -------PFSGPIGATRVALIDKQWVAFPTHSELEDAVFDMVVAGRVTDSGDVAIMMVEA 210

Query: 205 SAERATF----------SQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
            +   TF          +++     L  AK  I  L++ Q   ++ +
Sbjct: 211 ESTPGTFDAVAAGKQAPTEEIVAEGLEAAKGFIKTLVEAQ-SALAAK 256


>gi|46201049|ref|ZP_00055817.2| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Magnetospirillum magnetotacticum MS-1]
          Length = 354

 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 79/229 (34%), Gaps = 31/229 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           R++ L    +++ A+G+ LV +G+T +L T                  +T  Y     + 
Sbjct: 16  RKLVLETGKIARQADGAVLVTYGETSVLCTVVG---AKSQKPGIDFFPLTVNYQEKAFAA 72

Query: 71  G----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GG 124
           G       KRE   GR   +   + R+I R +R +         Q++  C V+  D    
Sbjct: 73  GKIPGGFFKRE---GRPSEKETLVSRLIDRPIRPLFADGFRNEVQVV--CTVLSHDLEND 127

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
              AA+ G   AL                     G V A   G + G  +++   G+   
Sbjct: 128 PDIAALVGTSAAL-------------TISGLPFMGPVGAARVGYVNGEYVLNPLVGDLPK 174

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
            D+D     T  G ++     +E    S+D     +         +I+ 
Sbjct: 175 SDLDLVVAGTVEGVLMV---ESEAKQLSEDIMLGAVMFGHRSFQAVIQA 220



 Score = 35.5 bits (81), Expect = 6.8,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGS 27
           +R+ GR    +R I +   V   A GS
Sbjct: 315 VRIDGRDTKTVRAIEVEVGVLPRAHGS 341


>gi|224537711|ref|ZP_03678250.1| hypothetical protein BACCELL_02593 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520634|gb|EEF89739.1| hypothetical protein BACCELL_02593 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 467

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 86/238 (36%), Gaps = 31/238 (13%)

Query: 3   LSGRQENQMREISLTRRVS-KYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGWIT 60
             GR       I+L      K A+GS +++ G+T LL T    ++ VP     T    + 
Sbjct: 12  PDGRT------ITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVP----GTDFMPLQ 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDV 118
            EY     S   R               EI   R++ RALR +   +     ++ ++  +
Sbjct: 62  VEY-KEKFSASGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDN--YHAEVYVNIIL 118

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
             ADG           + + D L  +   +          G ++ +    + G  +++  
Sbjct: 119 YSADG-----------IDIPDALAGLAASAALAVSDIPFNGPISEVRVARIDGQFVINPT 167

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           + +    D+D     T   +I+ V+G  E +  S+      +  A + I      QK+
Sbjct: 168 FDQLEKADMDLMVGATYE-NIMMVEG--EMSEVSELDLLNAMKAAHEAIKVQCLAQKE 222



 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHG 57
           RL GR+ +++R I           GS +   G+T  L+T T    L+EK+   +      
Sbjct: 319 RLDGRKTDEIRPIWSEINCLPGPHGSAIFTRGETQSLSTVTLGTKLDEKIIDNVLEHGKE 378

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG    +  V  R+ G       +  RAL+  +         + +  D
Sbjct: 379 RFLLHYNFPPFSTGEAKAQRGVGRREVGHGH----LAWRALKGQIPAD--YPYVVRVVSD 432

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ 152
           +++++G +  A +    +AL D    ++   +   
Sbjct: 433 ILESNGSSSMATVCAGTLALMDAGVKIKQPVSGIA 467


>gi|325184014|emb|CCA18471.1| exosome complex exonuclease RRP45like protein putati [Albugo
           laibachii Nc14]
          Length = 473

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 93/269 (34%), Gaps = 43/269 (15%)

Query: 1   MRLSGRQENQMREISLT-RRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           +R  GR+  Q R+IS+  RR S  ++ S  +  G+T +L     E  V  +      G+ 
Sbjct: 28  IRTDGREMMQQRKISIQFRRNSSQSQAS--LCLGNTRVLANVHGEI-VTPFPDRPTEGFF 84

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQII 113
                + P ++ N       +GR    S E+ +MI R++R     D  AL    G +   
Sbjct: 85  NTSVDLSPMASQN-----FETGRPSSLSIELAKMIDRSIRDCRAFDTEALAILAGEKVWA 139

Query: 114 IDCD--VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ----------VLKGHV 161
           I C+  VI  DG    A    +  AL    +       + +              L  H 
Sbjct: 140 IYCEVHVIDHDGNLTDAVQIASIAALMHFRRPDLSLELQKENEDIKNFEAYDTIPLSLHH 199

Query: 162 AAISCG-----------MLCGYPI----VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
             +S                G       +D    E+  ++    F+      +  V  + 
Sbjct: 200 IPLSVSFSYMLTRDNMDKNDGSSSPLFFMDPTSREEQVMNGVITFIFNSFRELCAVHKNG 259

Query: 207 ERATFSQDHFFAMLNLAKDRIADLIKLQK 235
             A  S +       +A  R+ +L+ + K
Sbjct: 260 -GAPISTEDILRCAQIAAARVGELVSVLK 287


>gi|73993247|ref|XP_857268.1| PREDICTED: similar to Exosome complex exonuclease RRP43 (Ribosomal
           RNA processing protein 43) (Exosome component 8) (p9)
           (Opa-interacting protein 2) isoform 2 [Canis familiaris]
          Length = 200

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 14/155 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P        G++  
Sbjct: 23  RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEFAAPP-TDAPDKGYVVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIID 115
              + P  +         SG  G  +Q   + I   +    ++    L    G    ++ 
Sbjct: 82  NVDLPPLCSS-----RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLSWVLY 136

Query: 116 CDV--IQADGGTRTAAITGAWVALHDCLQHMEDCS 148
           CD+  +  DG    A       AL +    +    
Sbjct: 137 CDIICLDYDGNILDACTFALLAALKNGGSGLTGAK 171


>gi|71410043|ref|XP_807336.1| exosome-associated protein 4 [Trypanosoma cruzi strain CL Brener]
 gi|70871314|gb|EAN85485.1| exosome-associated protein 4, putative [Trypanosoma cruzi]
          Length = 229

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 76/231 (32%), Gaps = 26/231 (11%)

Query: 2   RLSGR-QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWI 59
           R  GR   + +R   +   V      S  V+ G+T ++      ++ V  +  +      
Sbjct: 3   RNGGRETPDGVRYPHIALDVLGQCHSSACVELGNTRVICAVHHPQQLVDEYRGSRGRVAC 62

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           T        S      + +V   +    +++   +      VV L  +    + +  +++
Sbjct: 63  TVRRSASAGSHSAGSAQPSVVTPE----KDMSLALEGVAEEVVILEKIPQLLVEVVVEIL 118

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
             DGG   A  T    AL      M D               A  S  +  G  ++D D 
Sbjct: 119 AEDGGVWDAVATSMSAALVSGGFEMHDL------------FSACGSALLSDGAVVLDPDA 166

Query: 180 GEDSTIDVDANF-VMTDSGHIVEV--QGSAERATFSQDHFFAMLNLAKDRI 227
            E+S     A   VM +SG I     QGS E  T        +++ A    
Sbjct: 167 AEESNAQASALVCVMLNSGEICYARHQGSCEPGT-----VLELVSSAMKGC 212


>gi|116669995|ref|YP_830928.1| polynucleotide phosphorylase/polyadenylase [Arthrobacter sp. FB24]
 gi|187470967|sp|A0JUV8|PNP_ARTS2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|116610104|gb|ABK02828.1| Polyribonucleotide nucleotidyltransferase [Arthrobacter sp. FB24]
          Length = 746

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 86/242 (35%), Gaps = 14/242 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R+++    V     GS + + G+T ++   TL     E+    +     
Sbjct: 343 IRIDGRGLTDIRQLTAEVEVLPRVHGSAIFERGETQIMGVTTLNMLKMEQQIDSLSPVTR 402

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 403 KRYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPSREEFPYAIRQVS 458

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  + +++ +    ++       +     G V+    G      + D
Sbjct: 459 EALSSNGSTSMGSVCASTLSMLNAGVPLKAAVAGIAM-----GLVSDQVDGQTRYAALTD 513

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    +  +Q   +          A L  A++    ++++   
Sbjct: 514 ILGAEDAFGDMDFKVAGTSEF-VTAIQLDTKLDGIPASVLAAALKQAREARLHILEVINS 572

Query: 237 VI 238
            I
Sbjct: 573 AI 574



 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 19/164 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM--LPR 68
           R I      ++K A G+ +V   +   L +AT   K P    +     +  E  M    R
Sbjct: 21  RVIRFETGRLAKQAAGAAMVYIDEDTALLSATTAGKHPREGFDFFPLTVDVEERMYAAGR 80

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR    +    R++ R LR           QI++    I  D      
Sbjct: 81  IPGSFFRRE---GRPSTEAILACRLMDRPLRPAFIKGLRNEVQIVVTVLAINPD------ 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
                   L+D +       +         G +  +   ++   
Sbjct: 132 -------ELYDVVAINASSMSTQLSGLPFSGPIGGVRVALVADE 168


>gi|297829330|ref|XP_002882547.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297328387|gb|EFH58806.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 287

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 90/258 (34%), Gaps = 34/258 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+    R I +   V   A GS  VK G T ++ +   E   P  ++    G + 
Sbjct: 20  LRTDGRKRLTYRPIYVETGVIPQANGSARVKIGGTDVIASVKAEIGRPSSLQ-PDKGKVA 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL-------RSVVDLSALGSRQ-- 111
                 P +      R          S E+   + R L        + ++LS+L  ++  
Sbjct: 79  VFIDCSPTAEPTFGGRGGE-----ELSSELALALQRCLLGGKSGAGAGINLSSLLIKEGK 133

Query: 112 ----IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA---- 163
               + ID  VI +DG    A       AL +      + S +    +  +  ++     
Sbjct: 134 VCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQPEIDISDEEYL 193

Query: 164 ----------ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
                     ++   +  + IVD    E+S +    +  +  +GHI  +      +    
Sbjct: 194 QFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRAGHICGLTKRG-GSGLDP 252

Query: 214 DHFFAMLNLAKDRIADLI 231
                M+++AK    +L+
Sbjct: 253 SVILDMISVAKHVTENLM 270


>gi|119620491|gb|EAX00086.1| polyribonucleotide nucleotidyltransferase 1, isoform CRA_a [Homo
           sapiens]
          Length = 500

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 14/149 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--------EKVPMWIRN 53
           R  GR    +R +S    + K   GS L + G T +L T T +        ++V   I  
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 417

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   ++ R+ G       +  +AL  V+         I 
Sbjct: 418 IKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHG----ALAEKALYPVIPRDF--PFTIR 471

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQ 142
           +  +V++++G +  A+  G  +AL D   
Sbjct: 472 VTSEVLESNGSSSMASACGGSLALMDSGN 500



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 27/203 (13%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R++ ++     ++A+GS +V+ GDT ++ TA   T             +    A  G +P
Sbjct: 54  RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
               N ++RE  +     +     R+I R++R +         Q++  C+++  DG    
Sbjct: 114 ---TNYLRREIGT---SDKEILTSRIIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNEP 165

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI GA VAL                     G V A+  G++ G  +V+    E S+ 
Sbjct: 166 DVLAINGASVALS-------------LSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSS 212

Query: 186 DVDANFVMTDSGHIVEVQGSAER 208
            ++          IV ++ SAE 
Sbjct: 213 TLNLVVAGAPKSQIVMLEASAEN 235


>gi|133918783|emb|CAL29596.1| polyribonucleotide nucleotidyltransferase [Agrobacterium
           tumefaciens]
          Length = 180

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 65/175 (37%), Gaps = 8/175 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR  + +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 7   RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++  +      + +  +
Sbjct: 67  RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPTAEQFPYTLRVVSE 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           + +++G +  A + G  +AL D    +        +  +L+G   A+   +L   
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDE 177


>gi|224014598|ref|XP_002296961.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968341|gb|EED86689.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 357

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 95/282 (33%), Gaps = 45/282 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWIT 60
           R S R    +R++ L R +   + GS LV+ G T L+ +           +     G + 
Sbjct: 74  RSSKRGPRTLRQLHLARSILSQSTGSSLVECGHTKLIVSVRGPRPANCGGLNGGNGGGLI 133

Query: 61  AEYGMLPR-----------------------STGNRVKREAVSGRQGGRSQ--------- 88
            E   +P                        STG R+ R+++S  Q   +          
Sbjct: 134 CEVRYMPHIGIRMETLARHSLSHDFSKSSSSSTGARIPRDSLSTSQDTSNLSSGGALCAP 193

Query: 89  -----E--IQRMIGRALR-SVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDC 140
                E  +   +  AL  +VV +       I +   V+Q+DGG   AA+ GA +AL D 
Sbjct: 194 AAFLDESYLSHRLQEALAPAVVLMDNENKMCIEVFVQVLQSDGGVFGAAVMGASLALVDA 253

Query: 141 LQHMEDC--SNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH 198
              M D    +   + +V++    A +        I D    E           +  +  
Sbjct: 254 GVGMRDVVCGSSAAVMKVVEEGDGAKNGTKSKYVAIADPSEDEILQASGVVTIAIMPNWR 313

Query: 199 IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             EV    +      +     + LA++    + K  K  + +
Sbjct: 314 --EVTVWDQFGKMPVESSQEAMELAREGCVTMHKFLKKCVLD 353


>gi|260950159|ref|XP_002619376.1| hypothetical protein CLUG_00535 [Clavispora lusitaniae ATCC 42720]
 gi|238846948|gb|EEQ36412.1| hypothetical protein CLUG_00535 [Clavispora lusitaniae ATCC 42720]
          Length = 305

 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 102/276 (36%), Gaps = 48/276 (17%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            RL GR  ++MR+  +T   ++Y  G   V+ GDT L    + E   P +      G  T
Sbjct: 23  FRLDGRALDEMRKPLITLSKTEY--GYVEVELGDTKLAVRVSCEIGKP-FEDRPFEGTFT 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQ--I 112
               +   ++         +G+       I R+I +A+R  + +DL +L    G +   I
Sbjct: 80  INTEISSMASP-----MFENGKNSDEEVLISRLIEKAVRRSNALDLESLCVIAGEKVWHI 134

Query: 113 IIDCDVIQADGGTRTAAITGAWVALH------------DCLQHMEDCSNKFQLSQVLKGH 160
             D + +  DGG   A+  G   AL             D   +  D      LS +L   
Sbjct: 135 RADINFLNYDGGLIDASCIGVMTALQHFKKPDVSIQGTDVTIYSFDERQPVPLS-ILHVP 193

Query: 161 VAAISCGMLCGY-------------PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207
           +         G               I+D +  E++  D      M  +  ++++   ++
Sbjct: 194 ICVTYSFFNPGDKEENIKGALNQEIAIMDANSKEEAIRDGSLVITMNKNRELIQL---SK 250

Query: 208 RATFSQDHFFAMLNLAKD--RIADLIKLQKDVISNE 241
                 D   A+L+LA++   +A+ +  Q   +  E
Sbjct: 251 NGGLPIDGV-ALLSLAQNSFAVAEKLTDQIKALLKE 285


>gi|260791023|ref|XP_002590540.1| hypothetical protein BRAFLDRAFT_124523 [Branchiostoma floridae]
 gi|229275734|gb|EEN46551.1| hypothetical protein BRAFLDRAFT_124523 [Branchiostoma floridae]
          Length = 219

 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 60/183 (32%), Gaps = 27/183 (14%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R     + +    +GS  V+ GDT +L       +V M         +   +       
Sbjct: 11  LRSFECEQNLLSRPDGSASVRQGDTSVLAAVYGPGEVKMSEEIIDKATLKVIFK------ 64

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
                     G  G   +  +R++     SVV         + I   VIQ  G   +  I
Sbjct: 65  -------PKIGLPGCAEKLQERLLRNTCESVVLAILHPRSGVNIVLQVIQDSGSLLSCCI 117

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYGEDSTIDVDA 189
             A +AL D    M             K  V+A++C ++  G  ++D D  ++       
Sbjct: 118 NAACMALVDSAVPM-------------KCLVSAVTCAVMEEGRIVLDPDSKQEKESSAVL 164

Query: 190 NFV 192
            F 
Sbjct: 165 TFA 167


>gi|301095816|ref|XP_002897007.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262108436|gb|EEY66488.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 171

 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 25/170 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI-RNTKHGWIT 60
           R  GR  N++R  +  +     A+GS  +  G + +L       +   W   NT    + 
Sbjct: 8   RQDGRAGNELRPFASEQGALFRADGSARMSHGSSTVLAAVYGPGQARNWRAENTDKATLD 67

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             + +               G    + +E +++I +    VV   +     I I   VI+
Sbjct: 68  VCFKL-------------EKGIMTSKEKEYEQIIRQTFAPVVLTDSFPRAVISIVVQVIE 114

Query: 121 ADGGTR--------TAAITGAWVALHDCLQHM---EDCSNKFQLSQVLKG 159
            +G             AI    +AL D    M      +++  L   L+ 
Sbjct: 115 DNGSISFPLFLIIAALAINAVSLALMDAGVPMLSVVTATSRLFLGSPLRD 164


>gi|289607403|emb|CBI60808.1| unnamed protein product [Sordaria macrospora]
          Length = 368

 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 75/224 (33%), Gaps = 27/224 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           ++L    V++ A+G+ +   G+T +L   T    V           +T  Y     S   
Sbjct: 16  LTLETGRVARQADGAVIATLGETVVLCAVTAARSV---KEGQDFFPLTVHYQ-EKYSAAG 71

Query: 73  RVKREAVSGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTA 128
           R+        +G   +E  + R+I R +R +          I +   V+  DG       
Sbjct: 72  RIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNE--INVIAQVLSYDGENEPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+  A  AL                     G + A   G + G  +++    +    D+D
Sbjct: 130 AMIAASAAL-------------TISGVPFMGPIGAGRVGYIDGEYVLNPTLDQVKEGDLD 176

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
                T    ++ V+  +E    S++     +  A D    ++ 
Sbjct: 177 LVVAATGDA-VMMVE--SEAKELSEEVMLGAVVFAHDASKKIVD 217



 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 4/72 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R I         A GS L   G+T  + T TL     E++   +    + 
Sbjct: 297 RIDGRDTKTVRPIEAMVHFLPRAHGSALFTRGETQAICTTTLGTKDAEQMIDGLNGLHYE 356

Query: 58  WITAEYGMLPRS 69
                Y   P S
Sbjct: 357 RFMLHYNFPPYS 368


>gi|195020434|ref|XP_001985193.1| GH14641 [Drosophila grimshawi]
 gi|193898675|gb|EDV97541.1| GH14641 [Drosophila grimshawi]
          Length = 415

 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 75/207 (36%), Gaps = 31/207 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           +R  GR+ N+ R++ LT      A+ G+  +  GDT +L   + +   P   R    G +
Sbjct: 28  IRFDGRKSNEFRDVKLTFG----ADWGTVALSMGDTKVLAQVSCDIGTPSSARG-NEGTL 82

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------ 111
                +   +  + V+      +    S     ++ R  RS   +DL +L          
Sbjct: 83  HLNVDIKGVAFLDEVQATHDQRQLTLNS-----LLERTFRSSRCLDLESLCIATEQHVWC 137

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALH-----------DCLQHMEDCSNKFQLSQVLKGH 160
           + +D +V+  DG    A+   A  AL            D ++   +   +      L   
Sbjct: 138 VRVDINVLNHDGNLYDASTIAALAALMHFRRPDVSFIEDEIRTYSERERELMPLLFLHYP 197

Query: 161 VAAISCGMLCG-YPIVDLDYGEDSTID 186
           V+   C       P+VD    E++  D
Sbjct: 198 VSVTYCVYKSSTQPLVDPTLLEENAAD 224


>gi|119960529|ref|YP_947337.1| polynucleotide phosphorylase/polyadenylase [Arthrobacter aurescens
           TC1]
 gi|187470966|sp|A1R525|PNP_ARTAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|119947388|gb|ABM06299.1| putative guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase alpha chain [Arthrobacter
           aurescens TC1]
          Length = 750

 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 86/242 (35%), Gaps = 14/242 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R+++    V     GS + + G+T ++   TL     E+    +     
Sbjct: 343 VRIDGRGLTDIRQLTAEVEVLPRVHGSAIFERGETQIMGVTTLNMLKMEQQIDSLSPVTR 402

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 403 KRYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPTREEFPYAIRQVS 458

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  + +++ +    ++       +     G V+    G      + D
Sbjct: 459 EALGSNGSTSMGSVCASTLSMLNAGVPLKAAVAGIAM-----GLVSDQVDGQTRYAALTD 513

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    +  +Q   +          A L  A++    ++++   
Sbjct: 514 ILGAEDAFGDMDFKVAGTSEF-VTAIQLDTKLDGIPASVLAAALKQAREARLHILEVINA 572

Query: 237 VI 238
            I
Sbjct: 573 AI 574



 Score = 44.7 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 50/168 (29%), Gaps = 27/168 (16%)

Query: 12  REISLTRR-VSKYAEGS--CLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYG 64
           R I      ++K A G+    +   DT LL+  T      E    +             G
Sbjct: 21  RVIRFETGRLAKQAAGASMVYIDE-DTALLSATTAGKQPREGFDFFPLTVDVEERMYAAG 79

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
            +P   G+  +RE   GR    +    R++ R LR           QI++    I  D  
Sbjct: 80  RIP---GSFFRRE---GRPSTEAILACRLMDRPLRPAFVKGLRNEVQIVVTVLAINPD-- 131

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
                       L+D +       +         G +  +   ++   
Sbjct: 132 -----------ELYDVVAINASSMSTQLSGLPFSGPIGGVRVALIADE 168


>gi|195341761|ref|XP_002037474.1| GM12087 [Drosophila sechellia]
 gi|194131590|gb|EDW53633.1| GM12087 [Drosophila sechellia]
          Length = 285

 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 90/234 (38%), Gaps = 30/234 (12%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--ITAEYGMLPR 68
           R ++ +   ++++A G+ + + GDT ++ TA     V     N   G+  +  +Y +   
Sbjct: 50  RNMTFSSGRLARFANGTAVCQMGDTAVMVTA-----VAKTKPNPGQGFMPLVVDYRLKNA 104

Query: 69  STGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           ++G R+    +    G   +EI   R+I R+LR +         Q++ +   + A     
Sbjct: 105 ASG-RIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAVHSPD 163

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI  A +AL                     G + A+  G+  G  +++    E  T  
Sbjct: 164 VLAINAASMALS-------------LSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQ 210

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN----LAKDRIADLIKLQKD 236
           +D     T    +V ++G  +     Q      +      A+  I ++ +LQK 
Sbjct: 211 LDLVVSATKQNLVVMLEG--KGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKA 262


>gi|242083100|ref|XP_002441975.1| hypothetical protein SORBIDRAFT_08g006250 [Sorghum bicolor]
 gi|241942668|gb|EES15813.1| hypothetical protein SORBIDRAFT_08g006250 [Sorghum bicolor]
          Length = 287

 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 89/260 (34%), Gaps = 34/260 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+  Q R +S+   V   A GS  V+ G T ++ +   E   P  I +   G ++
Sbjct: 21  IRTDGRRRLQFRALSVQTGVIPQANGSARVRLGVTEIIASVKAELGKPS-ILHPDKGKVS 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL-------RSVVDLSAL----GS 109
                 P +      R +        S E+   + R L        + +DLS+L    G 
Sbjct: 80  IFVDCSPTAEPMFEGRGSE-----ELSAELSAALQRCLLGGKSGSGAAIDLSSLIVVEGK 134

Query: 110 RQIIIDCD--VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA---- 163
               +  D  V+ +DG    A      VAL D      + S      +  + +V+     
Sbjct: 135 VCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPKVNVSVSAASEEEPEVNVSDEEFL 194

Query: 164 ----------ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
                     I+   +  + IVD    E+S      +  +   G I  +      A    
Sbjct: 195 QFDTSGVPVIITLTKVGRHYIVDATSEEESQTSSAVSVSVNRHGQICGLSKRG-GAGLDP 253

Query: 214 DHFFAMLNLAKDRIADLIKL 233
                ML++AK      I L
Sbjct: 254 SVILDMLSVAKHVSQQFISL 273


>gi|158291117|ref|XP_312616.4| AGAP002348-PA [Anopheles gambiae str. PEST]
 gi|157018221|gb|EAA07626.4| AGAP002348-PA [Anopheles gambiae str. PEST]
          Length = 260

 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 87/263 (33%), Gaps = 39/263 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           RL GR  ++ R++ ++      +E G   V  G+T  L   T E   P   R    G + 
Sbjct: 10  RLDGRTLDEFRKLRISFG----SEWGLVHVILGETRALARITCEVVEPKATR-PNEGMLF 64

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALG---SRQII-- 113
               + P +           GRQ     ++ R++ RAL+  + VDL +L      ++   
Sbjct: 65  LNVELGPMAAP-----HFDGGRQSDECVQLNRILERALKDSNCVDLESLCLVSEEKVWKL 119

Query: 114 -IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVA 162
            +D  V+  +G         A  AL    +           +     K  L   L  +  
Sbjct: 120 RVDVTVLNHEGNAIDCCSIAALTALAHFKRPDITVDGEDVIVHTIEEKDPLKVTLFHYPL 179

Query: 163 AISCGMLC--GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF--- 217
            +S  +       I D  Y E+   +    F +   G +  +       T +        
Sbjct: 180 CVSYAIFNQGKIAIADPTYLEERVAEARMVFGLNSYGELCGLHLGG--TTLTSAELLLRT 237

Query: 218 --AMLNLAKDRIADL-IKLQKDV 237
                  A+  +  +   +QKD 
Sbjct: 238 SAKASKRARLVVERIKAAIQKDA 260


>gi|133918787|emb|CAL29598.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum]
          Length = 180

 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 63/175 (36%), Gaps = 8/175 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 7   RIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++         + +  +
Sbjct: 67  RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPTVEQFPYTLRVVSE 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           + +++G +  A + G  +AL D    +        +  +L+G   A+   +L   
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLSDILGDE 177


>gi|289643638|ref|ZP_06475751.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Frankia symbiont of Datisca
           glomerata]
 gi|289506529|gb|EFD27515.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Frankia symbiont of Datisca
           glomerata]
          Length = 733

 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 89/248 (35%), Gaps = 30/248 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR   ++RE++          GS L + G+T +L   T      +E+ V     + 
Sbjct: 341 VRIDGRGVTEIRELAAEVDFIPRVHGSALFERGETQIL-GVTTLAMLRMEQTVDTLNPDR 399

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              ++   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 400 TKRYMH-NYNFPPYSTGETGRVGSPKRREIGHG----ALAERALLPVLPSREEFPYAIRQ 454

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             + + ++G T   ++  + ++L +                 LK  VA I+ G++     
Sbjct: 455 VSEALGSNGSTSMGSVCASTLSLLNAGV-------------PLKAAVAGIAMGLIREGDQ 501

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED+  D+D     T    +  +Q   +            L  A+     +
Sbjct: 502 FVTLTDILGAEDAYGDMDFKVAGTREF-VTALQLDTKLDGIPATVLAGALQQARAARLAI 560

Query: 231 IKLQKDVI 238
           + +  + I
Sbjct: 561 LDVMAEAI 568



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 79/244 (32%), Gaps = 39/244 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGML 66
           R +      +++ A GS +   GDT +L+  T+    +E++  +             G +
Sbjct: 23  RTVRFETGRLARQAAGSAVAYLGDTMVLSATTVSKQPKEQLDFFPLTVDVEERMYAAGRI 82

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+  +RE   GR    +    R+I R LR           QI+     +  D    
Sbjct: 83  P---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFVKGLRNEIQIVATVLALDPDTLYD 136

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI  A  +                      G + A   G + G  I    + E     
Sbjct: 137 VVAINAASASTTLAGL-------------PFSGPIGATRVGYVDGTWIAFPTHAELERAT 183

Query: 187 VDANFVMT--DSGH-----IVEVQGSAERATF--------SQDHFFAMLNLAKDRIADLI 231
            D        D G      +VE + +A             ++D   A L  AK  I +L 
Sbjct: 184 FDMVVAGRVLDDGSDVAIMMVEAEATAHTIPLLAAGSPAPTEDVVAAGLEAAKPAIRELC 243

Query: 232 KLQK 235
           + Q+
Sbjct: 244 RAQR 247


>gi|133918791|emb|CAL29600.1| polyribonucleotide nucleotidyltransferase [Rhizobium galegae]
          Length = 180

 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 63/175 (36%), Gaps = 8/175 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 7   RIDGRDLETVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++         + +  +
Sbjct: 67  RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPTVEQFPYTLRVVSE 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           + +++G +  A + G  +AL D    +        +  +L+G   A+   +L   
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDE 177


>gi|91081401|ref|XP_972667.1| PREDICTED: similar to exosome component 8 [Tribolium castaneum]
 gi|270006123|gb|EFA02571.1| hypothetical protein TcasGA2_TC008282 [Tribolium castaneum]
          Length = 271

 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/252 (15%), Positives = 79/252 (31%), Gaps = 28/252 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+  + R I +       A+GS + K G T ++     E   P        G++ 
Sbjct: 22  IRPDGREFGEYRPIVVNLGSISTADGSAIAKVGRTTVVCGIKAELCQPK-AEAANEGFLI 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALG------SRQI 112
               + P  +          G    ++Q   +++   L++   +DL  L       +  +
Sbjct: 81  PNVELPPLCSSKFR-----PGPPTEQAQVATQLVADILKNSDCLDLKTLCIFPDKLAWCL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV---------LKGHVAA 163
             D   +  DG    A +     AL                 QV         +     A
Sbjct: 136 YADLICLDLDGALIDACVVALMAALKSVTLPAVQYDPALDNKQVNVQERKALSVTNTPIA 195

Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
            +  M     ++D    E+         V+ +   +  V        F+++     +  +
Sbjct: 196 TTFAMFDDKILIDPTVDEEDLSTSLVTIVVKEE-ELCFVHKPG-GCVFTEEQLLKCVEES 253

Query: 224 KDR---IADLIK 232
             R   I ++I+
Sbjct: 254 TKRATVIEEIIE 265


>gi|269127530|ref|YP_003300900.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Thermomonospora curvata DSM
           43183]
 gi|268312488|gb|ACY98862.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Thermomonospora curvata DSM
           43183]
          Length = 775

 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 79/213 (37%), Gaps = 26/213 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R++S    V     GS L + G+T +L   TL     E+    +   + 
Sbjct: 342 VRIDGRGVKDLRQLSAEVHVVPRVHGSALFERGETQILGVTTLNMLRMEQTIDTLSPERT 401

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 402 KRYMHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERALIPVLPSREEFPYAIRQVS 457

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGYPI 174
           + I ++G T   ++  + ++L D                 LK  VA I+ G++   G  +
Sbjct: 458 EAIGSNGSTSMGSVCASTMSLLDAGV-------------PLKDMVAGIAMGLIYENGEYV 504

Query: 175 --VDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
              D+   ED+  D+D     T    I  +Q  
Sbjct: 505 TLTDILGAEDAFGDMDFKVAGTRDL-ITALQLD 536



 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 76/245 (31%), Gaps = 39/245 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTATL----EEKVPMWIRNTKHGWITAEYGM 65
           R +      +++ A GS +V   + T +L+  T+    +E +  +             G 
Sbjct: 24  RTLRFETGRLARQAAGSAVVYLDEETMVLSATTVSKKPKETLDFFPLTVDVEERMYAAGR 83

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           QI+     +  +   
Sbjct: 84  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFAKGLRNEIQIVETVLALHPEHLY 137

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A ++                      G +  +   ++ G  +    + E    
Sbjct: 138 DVVAINAASMS-------------TLLSGVPFSGPIGGVRVALIDGQWVAFPTHSELERA 184

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
             D              I+ V+  + R T           +++     L  +K  I  L 
Sbjct: 185 TFDMVVAGRTLDNGDVAIMMVEAESTRDTLKLVAEGAPAPTEERVAEGLEASKPFIKILC 244

Query: 232 KLQKD 236
             Q++
Sbjct: 245 DAQRE 249


>gi|281207355|gb|EFA81538.1| Putative exosome complex exonuclease [Polysphondylium pallidum
           PN500]
          Length = 470

 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 90/263 (34%), Gaps = 33/263 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR+ N MR I +         G   V+ G T + TT T E   P   R    G+  
Sbjct: 21  LRVDGRRLNDMRSIKINFGKQY---GMVEVQLGRTRVYTTVTCEVTEPKPER-PNEGFFI 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSR------QI 112
               + P S+ +       S R      E+ R+I R L+    +D  AL         ++
Sbjct: 77  FNTDVSPMSSVS-----VDSSRGNPVEAELGRLIERGLKESRAIDTEALCIVAGSKVWKV 131

Query: 113 IIDCDVIQADGGTRTAAITGAWVALH------------DCLQHMEDCSNKFQLSQVLKGH 160
             +  V+   G     A      AL             D   H  D      LS  +   
Sbjct: 132 KTNVHVLDDCGNLLDCASISVITALLHFRKPDVTVVGNDATIHPIDEREPVPLS--IHHT 189

Query: 161 VAAISCGMLCGYPI-VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
             +I+ G      + VD D  E+  +D   +F +     I  V       + + +     
Sbjct: 190 PISITFGFFPKAIMIVDPDNKEEQVMDGKLSFYVNVHKEICGVSKGG-GMSTTIEQVIKC 248

Query: 220 LNLAKDRIADLIKLQKDVISNEV 242
             ++  R  ++ +L ++ +   +
Sbjct: 249 SKISVIRATEITQLIREALHQNI 271


>gi|291412161|ref|XP_002722356.1| PREDICTED: exosome component 5-like [Oryctolagus cuniculus]
          Length = 235

 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 70/229 (30%), Gaps = 29/229 (12%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R  +  + +    +GS     GDT +L       +V                 +  ++T
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK------------VSKEIFNKAT 75

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
              + R  + G  G   +  +RMI     +VV  +      I +   ++   G      +
Sbjct: 76  LEVILRPKI-GLPGVAEKNRERMIRNTCEAVVLGALHPRTSITVVLQIVSDAGSLLACCL 134

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDA 189
             A +AL D    M                   ++C +   G  ++D    ++       
Sbjct: 135 NAACMALVDAGVPMRAL-------------FCGVTCALDSDGTLVLDPTAKQEKEARAVL 181

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            F +      +    S  +  +S       L  A+     + +  +D +
Sbjct: 182 TFALDSVDRKLL--MSTTKGLYSDAELQQCLAAAQTASQHVFRFYRDSL 228


>gi|297626619|ref|YP_003688382.1| polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) (PNPase) (Guanosine pentaphosphate
           synthetase) [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922384|emb|CBL56956.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
           phosphorylase) (PNPase) (Guanosine pentaphosphate
           synthetase) [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 736

 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 93/246 (37%), Gaps = 15/246 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
           +R+ GR    +R +S    V     GS L + G+T +L   TL     E+K+        
Sbjct: 341 VRIDGRGPKDIRALSSEVGVVPRVHGSGLFQRGETQVLGITTLNMLDMEQKLDTLSSVHT 400

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++  +Y M P STG   +  +   R+ G       +  RA+  V+         I   
Sbjct: 401 KRYMH-QYEMPPYSTGETGRVGSPKRREVGHG----ALASRAIVPVLPTREEFPYAIRQV 455

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            + I ++G T   ++  + ++L +    ++       +  + +   +  +  +     + 
Sbjct: 456 SEAIGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLMSETDESGKTSYL----ALT 511

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED+  D+D     T    +  +Q   +      D   A L  A+D    ++ +  
Sbjct: 512 DILGAEDALGDMDFKVAGTSEF-VTALQLDTKLNGIPADVLAAALLQARDARHAILDVIH 570

Query: 236 DVISNE 241
           D I + 
Sbjct: 571 DAIDSP 576



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 81/250 (32%), Gaps = 42/250 (16%)

Query: 14  ISLTRRVS-KYAEGSCLVKF-GDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
           +     +  + A+G+  V   GD+ LL+T T      E +  +             G +P
Sbjct: 23  MRFETGLLAQQADGAAAVYLDGDSMLLSTTTAQKKPREAIDFFPLTVDVEEKMYAVGRIP 82

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G+  +RE   GR    +    R+I R LR           Q+++    +        
Sbjct: 83  ---GSFFRRE---GRPSENAILTCRLIDRPLRPAFKKGLRNEVQVVVTVLALNPQVEYDM 136

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI-- 185
            A+  A ++                      G + A+   ++    +      ++     
Sbjct: 137 VAMNAASMSTQ-------------ISGLPFSGPIGAVRISLIGDQWVCLPTVDQEKDATF 183

Query: 186 ----------DVDANFVMTDSGHIV---EVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
                     D D   +M ++G      E+      A  +++   A L+ AK  I  L  
Sbjct: 184 SMVVAGRVLPDGDIAIMMVEAGGTEATWELVKGGRTAP-TEEVVAAGLDAAKPFIKVLCD 242

Query: 233 LQKDVISNEV 242
            Q + ++ +V
Sbjct: 243 AQAE-LAAQV 251


>gi|312194991|ref|YP_004015052.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Frankia sp. EuI1c]
 gi|311226327|gb|ADP79182.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Frankia sp. EuI1c]
          Length = 727

 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 79/215 (36%), Gaps = 30/215 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR   ++R +S          GS L + G+T +L   T      LE+ +     + 
Sbjct: 337 LRIDGRATTEIRALSAEVDYVPRVHGSALFERGETQIL-GVTTLAMLRLEQTIDTLNPDR 395

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              ++   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 396 TKRYMH-NYNFPPYSTGETGRVGSPKRREIGHG----ALAERALLPVLPSREEFPYAIRQ 450

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             + + ++G T   ++  + ++L +                 L+  VA I+ G++     
Sbjct: 451 VSEALSSNGSTSMGSVCASTLSLLNAGV-------------PLRAPVAGIAMGLIREGDA 497

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
              + D+   ED+  D+D     T    +  +Q  
Sbjct: 498 FVTLTDILGAEDAYGDMDFKVAGTREF-VTALQLD 531



 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 77/245 (31%), Gaps = 39/245 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGML 66
           R I      ++K A GS +   GDT +L+  T     +E +  +             G +
Sbjct: 19  RTIRFETGRLAKQAAGSVVAYLGDTMVLSATTASKNPKENLDFFPLTVDVEERMYAAGRI 78

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P   G+  +RE   GR    +    R+I R LR           Q++     +  +    
Sbjct: 79  P---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFTKGLRNEIQVVATVLALDPETLYD 132

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             AI  A  +                      G V A   G + G  +    + E +   
Sbjct: 133 VVAINAASASTLLAGL-------------PFTGPVGATRVGYVDGQWVAFPTHAELARAT 179

Query: 187 VDANFVM-----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
            D               I+ V+  A   T           ++D   A L  AK  I +L 
Sbjct: 180 FDMVVAGRVLEDDSDVAIMMVEAEATPGTVALLADGAPAPTEDVVAAGLEAAKPAIRELC 239

Query: 232 KLQKD 236
           + Q++
Sbjct: 240 RAQRE 244


>gi|258576013|ref|XP_002542188.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237902454|gb|EEP76855.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 270

 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 78/258 (30%), Gaps = 41/258 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI--RNTKHGW 58
           +RL GR+ N++R I      +  + GS  +  G+T ++       +         +    
Sbjct: 14  LRLDGRRWNELRLIDAQISTNPASSGSSYLATGNTVVVCNVHGPAEGKRSETTGGSGGAV 73

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           ++    +   +  +R K+  ++   GG                          I I   V
Sbjct: 74  VSVVVNIAGFAGIDRRKKSMMASGGGG----------------------SDSTISIHVSV 111

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI----SCGMLCG--- 171
           + +DG    A +    +AL D    M        +    +    A     S   + G   
Sbjct: 112 LSSDGSIFAACVNACTLALVDAGIPMPGLLCACTVGMSGRASTPAAELAQSSSRVGGINE 171

Query: 172 --YPIVDLDYGEDSTIDVDANFVMTDSGH-----IVEVQGSA---ERATFSQDHFFAMLN 221
              P++D+ + E+  +           G        E Q  +     +     +   M  
Sbjct: 172 SLDPLLDMSHPEEMELPHMTVANTNPVGGGSEADAEEAQMLSIVRMESGVHISYLETMFA 231

Query: 222 LAKDRIADLIKLQKDVIS 239
           +  D    + ++   V+ 
Sbjct: 232 VGIDGCKQMRQILNGVLK 249


>gi|133918789|emb|CAL29599.1| polyribonucleotide nucleotidyltransferase [Rhizobium tropici]
          Length = 180

 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 65/175 (37%), Gaps = 8/175 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR  + +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 7   RIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++  +      + +  +
Sbjct: 67  RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVVSE 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           + +++G +  A + G  +AL D    +        +  +L+G   A+   +L   
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLSDILGDE 177


>gi|301097627|ref|XP_002897908.1| exosome complex exonuclease RRP42-like protein [Phytophthora
           infestans T30-4]
 gi|262106656|gb|EEY64708.1| exosome complex exonuclease RRP42-like protein [Phytophthora
           infestans T30-4]
          Length = 295

 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/270 (18%), Positives = 94/270 (34%), Gaps = 41/270 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCL--VKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           +R  GR     R +SL   +   + GS    ++   T +L +  LE   P+   +   G 
Sbjct: 20  VRADGRDRLSYRSLSLETSLLAQSNGSARASLEASGTDVLASVKLEVASPL-PEDPNAGI 78

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQE-----IQRMIGRALRSV--VDLSAL---- 107
           +  +    P          +VS +  GR+ E     + +++ R L S    +L       
Sbjct: 79  VQVDVSCCP----------SVSAKLYGRAVEELNVELSQLMTRLLCSCPSAELEKYCIIP 128

Query: 108 GSR--QIIIDCDVIQADGGTRTAAITGAWVALHDCLQH---MEDCSNKFQLSQVLKGHVA 162
           G     I ID  V ++ G          + AL+D +     +     + +  +V     A
Sbjct: 129 GESVWSISIDVMVFESSGNLPDVISMAIYAALNDTIFPSVRLVGVEGEDKTIEVDTDPAA 188

Query: 163 A-----------ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
                       ++   +  Y I D    E+       +  +   G++  VQ S    + 
Sbjct: 189 GKLMMAQQWPICVTLSKIGDYFITDPLQEEELCTTAQMSVAVNPDGNVCGVQKSG-NGSI 247

Query: 212 SQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
             +    M++ A  R  DL KL +  +  +
Sbjct: 248 EMEEMQQMIDEACARSKDLFKLLQKALLEQ 277


>gi|133918793|emb|CAL29601.1| polyribonucleotide nucleotidyltransferase [Rhizobium giardinii]
          Length = 180

 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 65/175 (37%), Gaps = 8/175 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR  + +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 7   RIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++  +      + +  +
Sbjct: 67  RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVVSE 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           + +++G +  A + G  +AL D    +        +  +L+G   A+   +L   
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDE 177


>gi|296129365|ref|YP_003636615.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Cellulomonas flavigena DSM
           20109]
 gi|296021180|gb|ADG74416.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Cellulomonas flavigena DSM
           20109]
          Length = 744

 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 87/244 (35%), Gaps = 18/244 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
            R+ GR    +R +S    V     GS L + G+T +L   T      +E+++      T
Sbjct: 340 FRIDGRGLRDIRTLSAEVEVLPRTHGSALFERGETQIL-GVTTLNMLRMEQQLDTLAPET 398

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +  ++   Y   P STG   +  +   R+ G       +  RA+  V+         I  
Sbjct: 399 RKRYMH-HYNFPPFSTGETGRVGSPKRREIGHG----ALAERAIVPVLPSREEFPYAIRQ 453

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             + + ++G T   ++  A ++L +    +        +     G V+    G      +
Sbjct: 454 VSEALGSNGSTSMGSVCAATLSLLNAGVPLRAPVAGIAM-----GLVSDTVDGETRYAAL 508

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED+  D+D     T    +  +Q   +            L  AK+    ++ + 
Sbjct: 509 TDILGAEDAFGDMDFKVAGTREF-VTAIQLDTKLDGIPASVLAGALTQAKEARLAILDVI 567

Query: 235 KDVI 238
            + I
Sbjct: 568 AEAI 571



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 75/246 (30%), Gaps = 40/246 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM-----WIRNTKHGWITAEYGM 65
           R +      ++K A GS +    D  +L +AT   K P      +             G 
Sbjct: 21  RTVRFETGRLAKQAAGSAVAYLDDDTMLLSATTAGKHPREGFDFFPLTVDVEERQYAAGK 80

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR +         Q+++    I  D   
Sbjct: 81  IP---GSFFRRE---GRPSTEAILACRLIDRPLRPLFVKGLRNEVQVVVTVLSINPDDAY 134

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A ++                      G V A+   ++ G  +    Y E    
Sbjct: 135 DVLAINAASISTQ-------------ISGLPFSGPVGAVRIALIDGQWVAFPRYTERERA 181

Query: 186 D----VDANFVMTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIADL 230
                V    V      I  ++  A   ++           ++      L  +K  I  L
Sbjct: 182 TFEIVVAGRVVEGGDVAIAMIEAEAPEKSWNLIRNEGGVAPTEAVVAEGLEASKPFIKAL 241

Query: 231 IKLQKD 236
           +  Q +
Sbjct: 242 VTAQME 247


>gi|133918827|emb|CAL29618.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
 gi|133918829|emb|CAL29619.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
 gi|133918831|emb|CAL29620.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
          Length = 180

 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 61/175 (34%), Gaps = 8/175 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I     V     GS L   G+T  +  ATL         ++  G    
Sbjct: 7   RIDGRDLETVRPIVAEVGVLPRTHGSSLFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++  +      + +  +
Sbjct: 67  NFMLHYNFPPFSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSE 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           + +++G +  A + G  +AL D    +        +  + +    A+   +L   
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDE 177


>gi|126697382|gb|ABO26648.1| exosome component 5 [Haliotis discus discus]
          Length = 211

 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 72/233 (30%), Gaps = 27/233 (11%)

Query: 10  QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
            +R ++    V    +G+     GDT +L       +V +         +   Y      
Sbjct: 3   DLRPMTSDLGVLTRPDGTVTFTQGDTGILAAVYGPGEVKIAREILDRATVEVIY------ 56

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
                 +  + G    R  E  R I   + +V+  S      I +    +Q  G     +
Sbjct: 57  ----KPKSGLPG-CSERLHE--RYIRNTVETVILASLHPRSCISVTVQELQDSGSLLACS 109

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           +  A +AL D   +M+       +    +G+   +      G  +  + +  ++     +
Sbjct: 110 VNAACLALLDACVNMKYLIAGVYVIIDREGNTVLVPDLKQEGEKVAGVTFVLEN--QTYS 167

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
              M+  G            + + + F   L  A+     +    +  +  ++
Sbjct: 168 VVTMSSRG------------SLTTEQFHRCLLHAQAAAKQIFSFYRIAVEKKM 208


>gi|313870783|gb|ADR82276.1| exosome complex exonuclease [Blumeria graminis f. sp. tritici]
          Length = 303

 Score = 82.8 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 84/271 (30%), Gaps = 46/271 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           +RL  R  +Q R I+       +AE  G   +  G T +    + E   P +      G 
Sbjct: 23  LRLDARPFDQFRPIT-----LAFAERYGVVDLSLGGTRIHAHVSAEVTQP-YPDRPYEGL 76

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGS------R 110
            T    + P +           GR       + R++ + +R    +D  +L         
Sbjct: 77  FTIVTELSPMTHA-----HLEPGRNSPLEMLVSRLLEKTIRRSGALDPESLCLLAGQTCW 131

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGH 160
            I +D  V+  +G    AA      AL    +           +   + +  +   L   
Sbjct: 132 SIRVDVHVLSVEGNLIDAASIAVIAALAHFKRPETNTVGGEVTLYTLAEREPVPLSLLHW 191

Query: 161 VAAISCGML---------CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
              I+                 ++D +  E+   +      M   G I ++      A  
Sbjct: 192 PLCITFSFYKDHSEGASGEDTVLLDANELEEHMREGSMTIGMNKHGEICQLVKLG-GAPV 250

Query: 212 SQDHFFAMLNLAKDRIADLI-----KLQKDV 237
                   +NLA  ++ ++      +LQ+D 
Sbjct: 251 DAASLLKCVNLASMKVKEVSDIIAKQLQEDA 281


>gi|254479104|ref|ZP_05092456.1| 3' exoribonuclease family, domain 2, protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034953|gb|EEB75675.1| 3' exoribonuclease family, domain 2, protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 333

 Score = 82.8 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 68/186 (36%), Gaps = 26/186 (13%)

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            Y   P S G          R+ G       +  RAL  V+         I +  +V+ +
Sbjct: 3   HYNFPPYSVGEVRPLRGPGRREIGHG----ALAERALEPVIPSEEEFPYTIRLVSEVLSS 58

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----PIVDL 177
           +G T  A++ G+ +AL D                 +K  VA I+ G++        + D+
Sbjct: 59  NGSTSQASVCGSTLALMDAGV-------------PIKAPVAGIAMGLIKEEDEVLILTDI 105

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK-- 235
              ED   D+D     T+ G +  +Q   +     +D     L  A+   A L  LQK  
Sbjct: 106 QGIEDFLGDMDFKVAGTEKG-VTAIQMDIKIPGIDRDILQMALEKARK--ARLYVLQKML 162

Query: 236 DVISNE 241
           +VI   
Sbjct: 163 EVIKEP 168


>gi|12001940|gb|AAG43113.1|AF058952_1 polynucleotide phosphorylase A [Lactococcus lactis subsp. cremoris
           MG1363]
          Length = 425

 Score = 82.8 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 87/233 (37%), Gaps = 27/233 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGWITAEYGMLPR 68
           R +++    ++    G+ +V++GDT +LT AT+ +      +     +       G  P 
Sbjct: 13  RTLTVETGAIATQPNGAVVVRYGDTTVLTAATMGKMATGDFFPLQVNYEEKMYAAGKFP- 71

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KREA   R    +    R+I R +R +         Q+I        +   R A
Sbjct: 72  --GGFNKREA---RPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASGRVA 126

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ G+ +AL                     G +A +    + G  I++    E     ++
Sbjct: 127 AMFGSSLALA-------------ISDIPFDGPIAGVEVAYIDGKYIINPTVAEKEASSLE 173

Query: 189 ANFVMTDSGHIVEVQGSAERA-TFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            +     +G+I  +      A   S++     L    + + +LI+ Q ++++ 
Sbjct: 174 LSV----AGNINAINMVESGAKELSEEVMLGALLAGHNAVKELIEFQNEIVAK 222



 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 12/101 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYA--EGSCLVKFGDTHLLTTATL----EEKVPMWIRNT 54
           +R  GR+ +++R +      +  +   G+ L   G T  L+T TL    E ++   + + 
Sbjct: 316 IRPDGRKIDEIRPLDAEIDFTPRSITHGTGLFTRGQTQALSTLTLAPMNEAQIIDGLNDE 375

Query: 55  KHGWITAEYGMLPRSTGNR------VKREAVSGRQGGRSQE 89
                   Y     S G         +RE   G  G R+ E
Sbjct: 376 YKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALE 416


>gi|133918825|emb|CAL29617.1| polyribonucleotide nucleotidyltransferase [Rhizobium undicola]
          Length = 180

 Score = 82.8 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 63/175 (36%), Gaps = 8/175 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 7   RIDGRDLETVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++  +      + +  +
Sbjct: 67  NFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSE 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           + +++G +  A + G  +AL D    +        +  +L+G   A+   +L   
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDE 177


>gi|301118164|ref|XP_002906810.1| polyribonucleotide nucleotidyltransferase, putative [Phytophthora
           infestans T30-4]
 gi|262108159|gb|EEY66211.1| polyribonucleotide nucleotidyltransferase, putative [Phytophthora
           infestans T30-4]
          Length = 893

 Score = 82.8 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 73/223 (32%), Gaps = 23/223 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT---LEEKVPMWIRNTKHG 57
           +RL GR    +R + +   V   A GS L   G+T  L + T   LE  + +     +  
Sbjct: 403 VRLDGRPVRIVRPLEMKAAVLPMAHGSSLFARGETQTLCSVTLGPLERGIRLRGALHEAR 462

Query: 58  W------------ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105
                            Y   P       +    + R  G       +  +A+  ++   
Sbjct: 463 EQAERDAPAPFKHAMLHYEFPPFCVNETGRVGGTNRRMIGHG----ALAEKAVLPILPSI 518

Query: 106 ALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS 165
                 + +  +V+ +DG +  A + G  +AL D    +        +  V  G   A  
Sbjct: 519 TEFPYTVRMTSEVVGSDGSSSMATVCGVSLALMDAGVPVRRAVAGIAIGLVTAGDPFACQ 578

Query: 166 CGMLCG---YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
              +       + D+   ED   D+D     T SG +  +Q  
Sbjct: 579 EKRIEEGNYQLVTDILGSEDHYGDMDFKVAGTTSG-VTALQLD 620



 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 73/228 (32%), Gaps = 26/228 (11%)

Query: 22  KYAEGSCLVKFGDTHLLTTAT-----LEEKVPMWIRNTKHGWITAEYGMLPRSTG---NR 73
           K A+G+ L   G T LLTT           V           +T ++ +   + G   + 
Sbjct: 92  KLADGAVLASCGRTVLLTTVVSGDHHGNPSVNGGSTQRDFLPLTVDFRVKSHAVGLIPDN 151

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
            KR   +G          R++ RA+R +       + Q++        +      A+  A
Sbjct: 152 QKRREFTG--SDEEVLQSRVVDRAIRPLFPRDYCENTQVLATVQSYDPNNDPLVVAVNSA 209

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
              L                     G V  +    + G  +V+    +     +D  +  
Sbjct: 210 SAVLSM-------------SDIPWDGPVGCVRVVEVDGQLVVNPTAPQREAATMDVLYAG 256

Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           T   H + V+ S +    ++      L+LA       I+ QK + +  
Sbjct: 257 TAE-HAIMVEASGDE--VTEARLDEALDLAHTNAVSAIEEQKKLAAEH 301


>gi|195620544|gb|ACG32102.1| exosome complex exonuclease RRP42 [Zea mays]
          Length = 287

 Score = 82.8 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 89/260 (34%), Gaps = 34/260 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+  Q R +S+   V   A GS  V+ G T ++ +   E   P  I +   G + 
Sbjct: 20  LRTDGRRRLQFRSLSVQTGVIPQANGSARVRLGATDIIASVKAELGKPS-ILHPDKGKVA 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL-------RSVVDLSAL----GS 109
                 P +      R +        S E+   + R L        + +DLS+L    G 
Sbjct: 79  IFVDCSPTAEPLFEGRGSE-----ELSAELSVSLQRCLLGGKSGAGAAIDLSSLIVVDGK 133

Query: 110 RQIIIDCD--VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA---- 163
               +  D  V+ +DG    A      VAL D      + S      +  +  V+     
Sbjct: 134 VCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPKVNVSVSAASDEEPEVDVSDEEFL 193

Query: 164 ----------ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
                     I+   +  + IVD    E+S +    +  +   G I  +      A    
Sbjct: 194 QFDTSGVPVIITLTKVGRHYIVDATSEEESQMSSAVSVSVNRHGQICGLTKRG-GAGLDP 252

Query: 214 DHFFAMLNLAKDRIADLIKL 233
              F M+++AK      I L
Sbjct: 253 SVIFDMISVAKHVSQQFISL 272


>gi|308176844|ref|YP_003916250.1| polyribonucleotide nucleotidyltransferase [Arthrobacter
           arilaitensis Re117]
 gi|307744307|emb|CBT75279.1| polyribonucleotide nucleotidyltransferase [Arthrobacter
           arilaitensis Re117]
          Length = 745

 Score = 82.8 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 14/242 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R++S    V     GS + + G+T ++   TL     E+    +   K 
Sbjct: 346 VRIDGRGLADIRQLSAEVEVLPRVHGSAIFERGETQIMGVTTLNMLKMEQQIDSLSPVKS 405

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 406 KRYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPSREEFPYAIRQVS 461

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  + ++L +    ++       +     G V+    G      + D
Sbjct: 462 EALGSNGSTSMGSVCASTLSLLNAGVPLKAAVAGIAM-----GLVSDTVDGETRYAALTD 516

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    +  +Q   +          A L  A++    ++ +   
Sbjct: 517 ILGAEDAMGDMDFKVAGTSEF-VTAIQLDTKLDGIPASVLAAALTQAREARLHILNVLNQ 575

Query: 237 VI 238
            I
Sbjct: 576 AI 577



 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 19/163 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM--LPR 68
           R I      ++K A GS +V   D   L +AT   K P    +     +  E  M    R
Sbjct: 21  RTIRFETGRIAKQAAGSAMVYIDDETALLSATTAGKHPREGFDFFPLTVDVEERMYAAGR 80

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR    +    R++ R LR           Q+++    I+ D      
Sbjct: 81  IPGSFFRRE---GRPSTEAILACRLMDRPLRPAFVKGLRNEVQVVVTVLSIEPD------ 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
                   L+D +       +         G +  +   ++  
Sbjct: 132 -------ELYDVVAINASSMSTQLSGLPFSGPIGGVRVALVDD 167


>gi|221119375|ref|XP_002161086.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 221

 Score = 82.8 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 73/233 (31%), Gaps = 37/233 (15%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA----EYGML 66
           MRE+       +  +GS  +  G T +++      +V M    T    I      + GM 
Sbjct: 1   MREMECNLAYLEKPDGSVTLSHGQTKVISAVYGPVEVKMNKEITDKATIICILKPKIGMS 60

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
                      AV  +       +++++ +     +  S      I +   ++   G   
Sbjct: 61  -----------AVKEKV------MEKIVAKTCEQAIIASLHPRSAIQVVLQIVHDSGSLL 103

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
           +  I  A ++L      M +              V+           +VD    E     
Sbjct: 104 SCLINAACLSLVHAGLPMRNMI------------VSVCCAVTNNDEYLVDPTIAEIQDCK 151

Query: 187 VDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
               F   + +  IV +        F+ + +F  L LAK    D++  Q+  +
Sbjct: 152 CVLTFAFESKNLDIVSI---FTSGLFTVEQYFQCLQLAKASAPDILNFQRQSV 201


>gi|195636336|gb|ACG37636.1| exosome complex exonuclease RRP42 [Zea mays]
          Length = 287

 Score = 82.8 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 89/260 (34%), Gaps = 34/260 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+  Q R +S+   V   A GS  V+ G T ++ +   E   P  I +   G + 
Sbjct: 20  VRTDGRRRLQFRSLSVQTGVIPQANGSARVRLGATEIIASVKAELGKPS-ILHPDKGKVA 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL-------RSVVDLSAL----GS 109
                 P +      R +        S E+   + R L        + +DLS+L    G 
Sbjct: 79  IFVDCSPTAEPLFEGRGSE-----ELSAELSVSLQRCLLGGKSGAGAAIDLSSLIVVDGK 133

Query: 110 RQIIIDCD--VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA---- 163
               +  D  V+ +DG    A      VAL D      + S      +  +  V+     
Sbjct: 134 VCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPKVNVSVSAASDEEPEVDVSDEEFL 193

Query: 164 ----------ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
                     I+   +  + IVD    E+S +    +  +   G I  +      A    
Sbjct: 194 QFDTSGVPVIITLTKVGRHYIVDATSEEESQMSSAVSVSVNRHGQICGLTKRG-GAGLDP 252

Query: 214 DHFFAMLNLAKDRIADLIKL 233
              F M+++AK      I L
Sbjct: 253 SVIFDMISVAKHVSQQFISL 272


>gi|194707850|gb|ACF88009.1| unknown [Zea mays]
 gi|223975603|gb|ACN31989.1| unknown [Zea mays]
          Length = 287

 Score = 82.8 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 89/260 (34%), Gaps = 34/260 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+  Q R +S+   V   A GS  V+ G T ++ +   E   P  I +   G + 
Sbjct: 20  VRTDGRRRLQFRSLSVQTGVIPQANGSARVRLGATEIIASVKAELGKPS-ILHPDKGKVA 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL-------RSVVDLSAL----GS 109
                 P +      R +        S E+   + R L        + +DLS+L    G 
Sbjct: 79  IFVDCSPTAEPLFEGRGSE-----ELSAELSVSLQRCLLGGKSGAGAAIDLSSLIVVDGK 133

Query: 110 RQIIIDCD--VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA---- 163
               +  D  V+ +DG    A      VAL D      + S      +  +  V+     
Sbjct: 134 VCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPKVNVSVSAASDEEPEVDVSDEEFL 193

Query: 164 ----------ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
                     I+   +  + IVD    E+S +    +  +   G I  +      A    
Sbjct: 194 QFDTSGVPVIITLTKVGRHYIVDATSEEESQMSSAVSVSVNRHGQICGLTKRG-GAGLDP 252

Query: 214 DHFFAMLNLAKDRIADLIKL 233
              F M+++AK      I L
Sbjct: 253 SVIFDMISVAKHVSQQFISL 272


>gi|325962822|ref|YP_004240728.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468909|gb|ADX72594.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 767

 Score = 82.8 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 87/242 (35%), Gaps = 14/242 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R+++    V     GS + + G+T ++   TL     E+    +   K 
Sbjct: 357 IRIDGRGLTDIRQLTAEVEVLPRVHGSAIFERGETQIMGVTTLNMLKMEQQIDSLSPVKT 416

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 417 KRYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPSREEFPYAIRQVS 472

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  + +++ +    ++       +     G V+    G      + D
Sbjct: 473 EALGSNGSTSMGSVCASTLSMLNAGVPLKAAVAGIAM-----GLVSDQVDGQTRYAALTD 527

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    +  +Q   +          A L  A++    ++++   
Sbjct: 528 ILGAEDAFGDMDFKVAGTSEF-VTAIQLDTKLDGIPASVLAAALKQAREARLHILEVINS 586

Query: 237 VI 238
            I
Sbjct: 587 AI 588



 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 52/164 (31%), Gaps = 19/164 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM--LPR 68
           R I      ++K A G+ +V   D   L +AT   K P    +     +  E  M    R
Sbjct: 35  RVIRFETGRLAKQAAGAAMVYIDDDTALLSATTAGKHPREGFDFFPLTVDVEERMYAAGR 94

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR    +    R++ R LR           QI++    I  D      
Sbjct: 95  IPGSFFRRE---GRPSTEAILACRLMDRPLRPAFIKGLRNEVQIVVTVLAINPD------ 145

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
                   L+D +       +         G +  +   ++   
Sbjct: 146 -------ELYDVVAINASSMSTQLSGLPFSGPIGGVRVALVADE 182


>gi|317125320|ref|YP_004099432.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Intrasporangium calvum DSM
           43043]
 gi|315589408|gb|ADU48705.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Intrasporangium calvum DSM
           43043]
          Length = 747

 Score = 82.8 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 90/252 (35%), Gaps = 34/252 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R +     V     GS + + G+T ++   T      +E+++      T
Sbjct: 339 VRIDGRGLADIRALGAEVEVLPRVHGSAIFERGETQIM-GVTTLNMLKMEQQLDTLSPQT 397

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +  ++   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 398 RKRYMH-NYNFPPYSTGETGRVGSPKRREIGHG----ALAERALMPVLPTREEFPYAIRQ 452

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP- 173
             + + ++G T   ++  + ++L +                 L+  VA I+ G++     
Sbjct: 453 VSEALSSNGSTSMGSVCASTLSLLNAGV-------------PLRAPVAGIAMGLVSDEVD 499

Query: 174 -------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                  + D+   ED+  D+D     T    +  +Q   +            L  A+D 
Sbjct: 500 GETRYAALTDILGAEDAFGDMDFKVAGTKEF-VTAIQLDTKLDGIPATVLAGALTQARDA 558

Query: 227 IADLIKLQKDVI 238
              ++ +  + I
Sbjct: 559 RLHILDVMAEAI 570



 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 76/241 (31%), Gaps = 39/241 (16%)

Query: 12  REISLTRRVSKYAEGSCLVKF--GDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R++           G  +V +   DT +++T +     +++   +             G 
Sbjct: 21  RKVRFETGRLAKQAGGAVVAYLDEDTMIMSTTSAGKTPKDQFDFFPLTVDVEERMYAIGK 80

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q+II    +  D   
Sbjct: 81  IP---GSFFRRE---GRPTTDAILTCRLIDRPLRPTFKKGLRNEVQVIISVFALNPDHQY 134

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G V  +   ++ G  +   ++ +    
Sbjct: 135 DVLAINAASASTQ-------------ISGLPFSGPVGGVRVSLIDGQWVAFPNFSDIERS 181

Query: 186 DVDANF---VMTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIADLI 231
             D      V+ D   I+ V+  +  +T+           +++     L  +K  I  L 
Sbjct: 182 VFDMVVAGRVVGDDVAIMMVEAESTDSTWDLVKNEGKQAPTEEVVAEGLESSKKFIKVLC 241

Query: 232 K 232
           +
Sbjct: 242 E 242


>gi|18398046|ref|NP_566318.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
           thaliana]
 gi|30680427|ref|NP_850537.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
           thaliana]
 gi|11762184|gb|AAG40370.1|AF325018_1 AT3g07750 [Arabidopsis thaliana]
 gi|26453010|dbj|BAC43581.1| putative 3' exoribonuclease [Arabidopsis thaliana]
 gi|56744222|gb|AAW28551.1| At3g07750 [Arabidopsis thaliana]
 gi|332641077|gb|AEE74598.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
 gi|332641078|gb|AEE74599.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
          Length = 286

 Score = 82.8 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 90/258 (34%), Gaps = 34/258 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+    R I +   V   A GS  V+ G T ++ +   E   P  ++    G + 
Sbjct: 19  LRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSLQ-PDKGKVA 77

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL-------RSVVDLSALGSRQ-- 111
                 P +      R          S E+   + R L        + ++LS+L  ++  
Sbjct: 78  VFIDCSPTAEPTFGGRGGE-----ELSSELALALQRCLLGGKSGAGAGINLSSLLIKEGK 132

Query: 112 ----IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA---- 163
               + ID  VI +DG    A       AL +      + S +    +  +  ++     
Sbjct: 133 VCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQPEIDISDEEYL 192

Query: 164 ----------ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
                     ++   +  + IVD    E+S +    +  +  +GHI  +   +  +    
Sbjct: 193 QFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGLTKRS-GSGLDP 251

Query: 214 DHFFAMLNLAKDRIADLI 231
                M+++AK     L+
Sbjct: 252 SVILDMISVAKHVTETLM 269


>gi|289613753|emb|CBI61594.1| unnamed protein product [Sordaria macrospora]
          Length = 297

 Score = 82.8 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 70/225 (31%), Gaps = 34/225 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           +RL GR+ +Q R + LT       +  G   V  G T +L  A+ E  VP +      G 
Sbjct: 24  IRLDGREFDQYRPLELTFG-----DEYGVANVSLGKTKILAKASAEVTVP-FADRPLDGI 77

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSR------ 110
            T    + P +            R       + R++ + +R    +D  +L         
Sbjct: 78  FTIATELSPMAAP-----HFEVNRPTETEVLLSRLLEKTVRRSGALDTESLCLVAGQKCW 132

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL--------SQVL----K 158
            + +D  V+  DG    AA      AL    +      N               L     
Sbjct: 133 SVRVDVHVLSHDGNLTDAACFAVVAALRHFRKPDTSMENGVLTVYTPAEREPVPLGWLHS 192

Query: 159 GHVAAISCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEV 202
                 S     G   ++D D+ E+          +   G I ++
Sbjct: 193 PFCVTWSFFGDEGETALLDADWMEEQVRVASLTISLNRHGEICQI 237


>gi|301109940|ref|XP_002904050.1| exosome complex exonuclease RRP43, putative [Phytophthora infestans
           T30-4]
 gi|262096176|gb|EEY54228.1| exosome complex exonuclease RRP43, putative [Phytophthora infestans
           T30-4]
          Length = 283

 Score = 82.8 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 84/251 (33%), Gaps = 25/251 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R     R + L   V + A  S LVK G T +LT   L    P  +     G + 
Sbjct: 35  VRPDTRTIEATRAVQLQTDVIQTAASSSLVKLGKTSVLTAIKLAVGTPA-VATPDQGELA 93

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEI----QRMIGRA----LRSVVDLSALGSRQI 112
            +  + P  +          GR    +Q I     R+I  +    + S+  +    + ++
Sbjct: 94  IQVHLSPLCSN-----RFTVGRPSEEAQSIGSQLTRVIAGSRVVEMESLSIVKGQSAWKL 148

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG----------HVA 162
           ++D   +  DG    AA+T    AL          +    +  ++               
Sbjct: 149 MVDVYGVDHDGNVLDAALTSIIAALKTLKLPATSVNEVDNVVSIVPDGDATPLRVEHGAY 208

Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
           A S  M+    ++D    E+       +   +  G +  V  +   +  +       + +
Sbjct: 209 ATSFAMVDDVVLIDPTSAEEGLSSAVFSLSYSTDGQLCGVHKAG-GSIVAPSVMQQCMTI 267

Query: 223 AKDRIADLIKL 233
           AK    +L KL
Sbjct: 268 AKRNTKELAKL 278


>gi|195591661|ref|XP_002085557.1| GD12240 [Drosophila simulans]
 gi|194197566|gb|EDX11142.1| GD12240 [Drosophila simulans]
          Length = 327

 Score = 82.4 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 85/249 (34%), Gaps = 27/249 (10%)

Query: 8   ENQM--REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWITAEYG 64
             Q+  R   +   V     GS  +++G+T +L      +++     R    G +     
Sbjct: 42  PTQLAPRNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVN 101

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
                TG+    E+V      R + +  M+ +AL  VV  +   + Q+ I   ++  DG 
Sbjct: 102 FAAFGTGDL---ESVP----ERERHLSSMLTKALEPVVCRTEFLNFQLDIRVLILDDDGC 154

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
             + AI    VAL +C     D       + + + HV       +      +L +   S 
Sbjct: 155 LLSTAINCCGVALVECGISTYDLIT-ASTACIYRDHVFLNPSAKIE-----ELLWKHRSN 208

Query: 185 IDVDAN-----------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
              D+             +        ++    +    S   +  +L+   D    L +L
Sbjct: 209 SGTDSTTSPSSAQEHGLIITASMDTFEQIAQCQQCGYLSPATYVKLLDYTLDMNKSLREL 268

Query: 234 QKDVISNEV 242
            K V++  V
Sbjct: 269 VKGVLTKRV 277


>gi|220912209|ref|YP_002487518.1| polynucleotide phosphorylase/polyadenylase [Arthrobacter
           chlorophenolicus A6]
 gi|254782702|sp|B8HG67|PNP_ARTCA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|219859087|gb|ACL39429.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Arthrobacter chlorophenolicus
           A6]
          Length = 752

 Score = 82.4 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 86/242 (35%), Gaps = 14/242 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R+++    V     GS + + G+T ++   TL     E+    +     
Sbjct: 343 IRIDGRGLTDIRQLTAEVEVLPRVHGSAIFERGETQIMGVTTLNMLKMEQQIDSLSPVTR 402

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 403 KRYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPSREEFPYAIRQVS 458

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  + +++ +    ++       +     G V+    G      + D
Sbjct: 459 EALGSNGSTSMGSVCASTLSMLNAGVPLKAAVAGIAM-----GLVSDQVDGQTRYAALTD 513

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    +  +Q   +          A L  A++    ++++   
Sbjct: 514 ILGAEDAFGDMDFKVAGTSEF-VTAIQLDTKLDGIPASVLAAALKQAREARLHILEVINS 572

Query: 237 VI 238
            I
Sbjct: 573 AI 574



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 19/164 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM--LPR 68
           R I      ++K A G+ +V   +   L +AT   K P    +     +  E  M    R
Sbjct: 21  RVIRFETGRLAKQAAGAAMVYIDEDTALLSATTAGKHPREGFDFFPLTVDVEERMYAAGR 80

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR    +    R++ R LR           QI++    I  D      
Sbjct: 81  IPGSFFRRE---GRPSTEAILACRLMDRPLRPAFVKGLRNEVQIVVTVLAINPD------ 131

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
                   L+D +       +         G +  +   ++   
Sbjct: 132 -------ELYDVVAINASSMSTQLSGLPFSGPIGGVRVALVADE 168


>gi|133918805|emb|CAL29607.1| polyribonucleotide nucleotidyltransferase [Ensifer adhaerens]
          Length = 180

 Score = 82.4 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 62/175 (35%), Gaps = 8/175 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 7   RIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++  +      + +  +
Sbjct: 67  RFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVVSE 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           + +++G +  A + G  +AL D    +        +  + +    A+   +L   
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDE 177


>gi|219118941|ref|XP_002180237.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408494|gb|EEC48428.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 212

 Score = 82.4 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 79/229 (34%), Gaps = 33/229 (14%)

Query: 20  VSKYAEGSCLVKFGDTHLL------TTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
           V + A+GS LV+ G T ++       TA+     P    N + G +  E      STG  
Sbjct: 1   VLEAAQGSALVELGHTKVIGQVLGPVTASSSHLPPSLQLNMEEGVMHFEL----LSTGKI 56

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
                       R  ++   +  AL + V L       +++   V+Q DG    A IT A
Sbjct: 57  NSWTIA------RETDLASNLSDALSASVPLRQYPKCALLVKITVLQDDGSILPACITAA 110

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF-V 192
            +AL D    M D              VAA +  +  G  + D    E S  D      +
Sbjct: 111 TLALADASVEMYDV-------------VAASTVAVCDGLLVADPTLREVSAADAVMTLAI 157

Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           + +       Q S      +       + L ++    + +  ++ +  E
Sbjct: 158 LPNWKESTLWQQSGR---LNPQRANEAMELCRNGCRTMHRFLREHLIQE 203


>gi|296127904|ref|YP_003635154.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Cellulomonas flavigena DSM
           20109]
 gi|296019719|gb|ADG72955.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Cellulomonas flavigena DSM
           20109]
          Length = 791

 Score = 82.4 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 82/242 (33%), Gaps = 14/242 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
            R+ GR    +R +S    V     GS L + G+T +L   TL     E+    +     
Sbjct: 377 FRIDGRGLRDIRTLSAEVEVLPRTHGSALFERGETQILGVTTLNMLRMEQQIDSLSPETR 436

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RA+  V+         I    
Sbjct: 437 KRYMHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERAIVPVLPAREEFPYAIRQVS 492

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  A ++L +    +        +     G V+    G      + D
Sbjct: 493 EALGSNGSTSMGSVCAATLSLLNAGVPLRAPVAGIAM-----GLVSDTVDGETRYAALTD 547

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    +  +Q   +            L  AK+    ++ +  +
Sbjct: 548 ILGAEDAFGDMDFKVAGTREF-VTAIQLDTKLDGIPASVLAGALTQAKEARLAILDVIAE 606

Query: 237 VI 238
            I
Sbjct: 607 AI 608



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 75/241 (31%), Gaps = 39/241 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPM-----WIRNTKHGWITAEYGM 65
           R +      ++K A GS +    D  +L +AT   K P      +             G 
Sbjct: 59  RTVRFETGRLAKQAAGSAVAYLDDDTMLLSATTAGKHPREAFDFFPLTVDVEERQYAAGK 118

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P +     +RE   GR    +    R+I R LR +         Q+++    I  D   
Sbjct: 119 IPGA---FFRRE---GRPSTDAILACRLIDRPLRPLFVKGLRNEVQVVVTVLSINPDDAY 172

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A ++                      G VAA    ++ G  +    Y E    
Sbjct: 173 DVLAINAASISTQLSGL-------------PFSGPVAATRLALVDGQWVAFPRYSERERS 219

Query: 186 DVDANF---VMTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIADLI 231
             D      V+ D   I  ++  A    +           +++     L  +K  I  L+
Sbjct: 220 TFDIVVAGRVVGDDVAIAMIEADAPENAWNLIHGGGGTAPTEEVVAQGLEASKPFIKVLV 279

Query: 232 K 232
           +
Sbjct: 280 E 280


>gi|255578727|ref|XP_002530222.1| exosome complex exonuclease rrp42, putative [Ricinus communis]
 gi|223530269|gb|EEF32169.1| exosome complex exonuclease rrp42, putative [Ricinus communis]
          Length = 287

 Score = 82.4 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 74/233 (31%), Gaps = 33/233 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +  R I +   V   A GS  V+ G T ++ +   E   P   +    G + 
Sbjct: 20  LRSDGRKRDAYRPIFVETGVIPQANGSARVRIGATEVIASVKAELGRPNAFQ-PDKGKVA 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL-------RSVVDLSALGSRQ-- 111
                 P +      R          S E+   +   L        + +DLS+L   +  
Sbjct: 79  IFVDCSPVAEPTFEARGGE-----ELSAELSAALQHCLLGGKSGAGAGIDLSSLVVAEGK 133

Query: 112 ----IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA---- 163
               + ID  V+  DG    A       AL +        +      +  +  ++     
Sbjct: 134 ICWDLYIDGLVVSFDGNLLDALGAAIKAALSNTGIPKVHVAAGGLGDEQPEVDISDEEFL 193

Query: 164 ----------ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
                     ++   +  + IVD    E+S +    +  +   GHI  +    
Sbjct: 194 QFDTSGVPVIVTLTKVGRHYIVDATSEEESYMSSAVSVSINRKGHICGLTKRG 246


>gi|85087002|ref|XP_957805.1| hypothetical protein NCU00334 [Neurospora crassa OR74A]
 gi|28918900|gb|EAA28569.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 297

 Score = 82.4 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 70/225 (31%), Gaps = 34/225 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           +RL GR+ +Q R + LT       +  G   V  G T +L  A+ E  VP +      G 
Sbjct: 24  IRLDGREFDQYRPLELTFG-----DEYGVANVSLGKTKILAKASAEVTVP-FADRPLDGI 77

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSR------ 110
            T    + P +            R       + R++ + +R    +D  +L         
Sbjct: 78  FTIATELSPMAAP-----HFEVNRPTETEVLLSRLLEKTVRRSGALDTESLCLVAGQKCW 132

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL--------SQVL----K 158
            + +D  V+  DG    AA      AL    +      N               L     
Sbjct: 133 SVRVDVHVLSHDGNLTDAACFAVVAALRHFRKPDTSMENGVLTVYTPAEREPVPLGWLHS 192

Query: 159 GHVAAISCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEV 202
                 S     G   ++D D+ E+          +   G I ++
Sbjct: 193 PFCVTWSFFGEEGETALLDADWMEEQVRVASVTISLNRHGEICQI 237


>gi|170091308|ref|XP_001876876.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648369|gb|EDR12612.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 276

 Score = 82.4 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 90/256 (35%), Gaps = 37/256 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  N  R++++       A+GS LV+ G+T ++     E   P        G++ 
Sbjct: 27  VRPDGRPLNVARDLAVNVGSISTADGSALVRLGNTTVVCGVKAEIAEPELDEGV-RGFLV 85

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII------ 114
               +    +           + G  S+E Q +  R   ++V  + L    + I      
Sbjct: 86  PNLDLPAMCSP--------RFKPGPPSEEAQVLSDRLNDALVASNILPLTSLSIHPNKAA 137

Query: 115 ---DCDV--IQADGGTRTAAITGAWVALHDCLQH---MEDCSNKFQLSQVLKGH------ 160
                D   I  DG    AA+     AL +        ++ + +   S+ +K        
Sbjct: 138 WVLYVDAICINYDGNVFDAALIAMVEALRNTQLPKATYDEETGRTTCSRKIKVPLELNHT 197

Query: 161 --VAAISCGMLCGYPIV-DLDYGEDSTIDVDANFVMTDS--GHIVEVQGSAERATFSQDH 215
                +S G+     ++ D    E+  +D   + +M+++    ++ V           D 
Sbjct: 198 SLPVPLSFGVFDSTHVLADPTSFEEPLLDTTISIIMSNANPDRLISVSQLGAGGN---DA 254

Query: 216 FFAMLNLAKDRIADLI 231
               +  A+ R  +++
Sbjct: 255 LLTCVEAARVRCREIV 270


>gi|168041870|ref|XP_001773413.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675289|gb|EDQ61786.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 287

 Score = 82.4 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 81/252 (32%), Gaps = 34/252 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR     R I++T  V   A GS   K G T ++ +   E   P   R   HG + 
Sbjct: 20  LRSDGRGRLDFRNIAITTGVIPQANGSSRCKVGGTDVMVSVKAELGNPPKGR-PSHGGMQ 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL-------RSVVDLSAL----GS 109
            +    P +      R          S E+ R + R+         + +DLS L    G 
Sbjct: 79  IKVECSPTANPEFEGRGGE-----ELSLELTRGLERSFLGGPNGSGAAIDLSTLRIVDGK 133

Query: 110 R--QIIIDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQV---------- 156
               + ID  V+ +DG    A       AL +  L  +E  +   +              
Sbjct: 134 TCWVLCIDGLVLSSDGNLLDALSIAVKAALRNTGLPKVEVVAGGAEDEDPEIEVDDEESS 193

Query: 157 ---LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
              +      I+   +     VD    E+S +    +  +   G +  V           
Sbjct: 194 QLDVSNAPVIITLTKVGKSYFVDATAEEESHMRSAVSVAVNRKGVVCGVTKRG-GEGLEP 252

Query: 214 DHFFAMLNLAKD 225
                M+++A+ 
Sbjct: 253 STIIDMISVAQQ 264


>gi|323449631|gb|EGB05517.1| hypothetical protein AURANDRAFT_59314 [Aureococcus anophagefferens]
          Length = 736

 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 86/237 (36%), Gaps = 31/237 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK------ 55
           R  GR  +++R I +  R    A GS +   G+T  L T TL +   M +RN        
Sbjct: 349 RSDGRATDEVRPIDVAMRPLPTAHGSAVFTRGETQSLATCTLGDN-SMNLRNDDALDDAK 407

Query: 56  -HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                  +Y   P S G   +  A   R+ G       +  +ALR+ +         + +
Sbjct: 408 PDKRFYLQYAFPPSSVGETGRVGAPGRREVGHG----ALAEKALRAAMPDKDAFPYSVRV 463

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGY 172
           +  + ++ G +  A++ G  +AL D                 L+  VA ++ G+L   G 
Sbjct: 464 ESLITESCGSSSMASVCGGCLALLD-------------GGVPLRCSVAGVAMGVLLADGE 510

Query: 173 ---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
               + D+   ED+   +D     +  G I   Q   +    S       +  A+  
Sbjct: 511 DPVVLTDILGVEDALGSMDFKVAGSAEG-ISAFQLDVKTLGLSAATLGDAMGQARAA 566



 Score = 39.3 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 12/115 (10%)

Query: 13  EISLTRRVS-KYAEGSCLVKFGDTHL---LTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
            + L      + A+ + + K G T +   L   + +        + ++      Y    R
Sbjct: 52  PLVLETGRLGRQADAAVIAKRGGTTVYTTLCVGSADGGGDFLPMSVEYQE---RYSSTGR 108

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
           ++G   KR+   GR   +     R+I R LR  V        Q+I    V+  DG
Sbjct: 109 TSGGYNKRD---GRANDKEILTCRLIDRPLRPTVVDGWCADLQLI--SWVLSYDG 158


>gi|225716114|gb|ACO13903.1| Exosome complex exonuclease RRP42 [Esox lucius]
          Length = 291

 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 75/263 (28%), Gaps = 34/263 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R + +   V    +GS  V  G T +L     E   P  +     G++ 
Sbjct: 22  LRVDGRGCEDYRHMEIETDVVSNTDGSAKVSLGHTDVLVGVKAEIGKPRPMV-PHEGYLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QI 112
                   +T     R            E+   + +    RS +DL +L          +
Sbjct: 81  FFVDCSANATPEFEGRGG-----DELGVELSNTLYKVFNNRSSIDLKSLCISPGEHCWVL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ--VLKGHVAAISCGMLC 170
            +D  ++Q DG    A       AL +        S   +  +   L           + 
Sbjct: 136 YVDVLLLQCDGNLFDAISVAIKAALFNTKIPKVHLSENEEGGKEIELSDDPYDCMRLNVE 195

Query: 171 GYP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
             P            +VD    E +         +T  G I  V+      +   +  F 
Sbjct: 196 NVPCIVTLCKVGYRHVVDATLQEKACSVASLIISVTHKGTITCVRKVG-GGSLDPESIFE 254

Query: 219 MLNLAKDRIADLIK-----LQKD 236
                K     L       LQK+
Sbjct: 255 TTETGKRVGKALHAPLMELLQKE 277


>gi|24667071|ref|NP_649157.1| Mtr3 [Drosophila melanogaster]
 gi|7293727|gb|AAF49096.1| Mtr3 [Drosophila melanogaster]
 gi|157816310|gb|ABV82149.1| FI01414p [Drosophila melanogaster]
          Length = 326

 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 10/145 (6%)

Query: 6   RQENQM--REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWITAE 62
           R+  Q+  R   +   V     GS  +++G+T +L      +++     R    G +   
Sbjct: 40  REPTQLAPRNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCY 99

Query: 63  YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
                 STG+             R + +  M+ +A+  VV  +   + Q+ I   ++  D
Sbjct: 100 VNFAAFSTGDLDSVP-------ERERHLSSMLTKAMEPVVCRTEFLNFQLDIRVLILDDD 152

Query: 123 GGTRTAAITGAWVALHDCLQHMEDC 147
           G   + AI    VAL +C     D 
Sbjct: 153 GCLLSTAINCCGVALVECGISTYDL 177


>gi|195037132|ref|XP_001990019.1| GH18468 [Drosophila grimshawi]
 gi|193894215|gb|EDV93081.1| GH18468 [Drosophila grimshawi]
          Length = 235

 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 77/234 (32%), Gaps = 31/234 (13%)

Query: 9   NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
           +++RE+         ++GS +   G T ++       +V     + +  ++   Y     
Sbjct: 12  DKLREMQCKFNPLSRSDGSVMYSQGATVVIAAVLGPIEVKTQNLSIEGSYLECNY----- 66

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 + +A   +   R +E    I   L   +   A    ++ +    ++  G T   
Sbjct: 67  ------RPKAGLPQVKERIREAA--IRDVLELALLSEAYPRSKMSLQVQELEDRGSTDAC 118

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDSTIDV 187
           A+  A +AL                   LK   AA+ C +   G  ++D +  E      
Sbjct: 119 ALNSACLAL-------------LIGGLPLKYSFAAVHCIINEQGEFVLDPELNETLRQQA 165

Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
              F      G+++ VQ    +  F    F  +  + +   A +    +  ++ 
Sbjct: 166 SFTFAFDSVDGNLLLVQ---TKGAFKIAQFNDIECICRAASAQIFDFYRSNLAK 216


>gi|328866220|gb|EGG14605.1| Putative exosome complex exonuclease RRP45 [Dictyostelium
           fasciculatum]
          Length = 469

 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 90/261 (34%), Gaps = 29/261 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR+ + MR++ ++        G   V+ G T + T+ + E   P   R    G+  
Sbjct: 21  LRIDGRRLDDMRDVKISFG---KEYGMVEVQLGRTRVYTSVSCEVAEPRPER-PNEGFFV 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------I 112
               +   S       E   GR      E+ R++ R L+    +D  AL          I
Sbjct: 77  FNTNISQMS-----NVEVDIGRSNPAELELGRLVERGLKESRAIDTEALCIVAGQKVWRI 131

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVA 162
           + +  ++   G     A      AL    +           +     +  +   +  +  
Sbjct: 132 VTNIHILDDCGNLLDCASISVITALLHFRKPDVTLVGNEATIHTLEEREPVPLSIHHYPV 191

Query: 163 AISCGMLCGYPI-VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +++ G      + VD D  E+  ID   +F++     I  V  S    + S D       
Sbjct: 192 SVTFGFFPDSLMIVDPDAKEEMVIDGKLSFLVNVHKEICGVSKSG-GMSTSIDQVIKCSK 250

Query: 222 LAKDRIADLIKLQKDVISNEV 242
           +A +R  D+    +  +   +
Sbjct: 251 MAINRAFDITNKIRIALHESI 271


>gi|148273228|ref|YP_001222789.1| polynucleotide phosphorylase/polyadenylase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|187610254|sp|A5CSN9|PNP_CLAM3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|147831158|emb|CAN02110.1| putative polyribonucleotide nucleotidyltransferase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 757

 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 88/244 (36%), Gaps = 18/244 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R +    +V     GS + + G+T +L   T      +E+++      T
Sbjct: 349 VRMDGRGLADIRPLDAEVQVIPRVHGSAIFQRGETQIL-GVTTLNMLKMEQQIDSLSPIT 407

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           K  ++   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 408 KKRYLH-HYNFPPYSTGETGRVGSPKRREIGHGF----LAERALVPVLPSREDFPYAIRQ 462

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             + + ++G T   ++  + ++L +    +        +     G V+    G +    +
Sbjct: 463 VSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAM-----GLVSDTVDGQVRYAAL 517

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED+  D+D     T    +  +Q   +            L  AK+    ++ + 
Sbjct: 518 TDILGAEDALGDMDFKVAGTSEF-VTAIQLDTKLDGIPTSVLDGALKQAKEARTAILGVL 576

Query: 235 KDVI 238
              I
Sbjct: 577 NQAI 580



 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 54/170 (31%), Gaps = 16/170 (9%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  +RE   GR    +  + R+I R LR           Q++I    I  D    + AI
Sbjct: 83  GSFFRRE---GRPSTEAILVCRLIDRPLRPSFITGLRNEVQVVITVLSIAPDEFYDSLAI 139

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA---------AISCGMLCGYPIVDLDYGE 181
             A  +               +L+ +    V          A+    + G  + D +  E
Sbjct: 140 NAASASSMLSGIPFSGPIAGVRLALIGDQWVVFPKHSQLKEAVFDITVAGRVVTDSEGNE 199

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
           D    +         G    +QG A +    +      L  AK  I  L+
Sbjct: 200 DVA--IMMVEAEATEGAWDLIQGGATKP--DEAIVAQGLEAAKPFIQQLV 245


>gi|281200684|gb|EFA74902.1| hypothetical protein PPL_11936 [Polysphondylium pallidum PN500]
          Length = 262

 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 72/237 (30%), Gaps = 47/237 (19%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R + Q R+I +   +   A GS  ++   T ++ +              +   +  E   
Sbjct: 56  RSDEQFRQIFMNTGIISSASGSSYIEIEQTKIICSVHGPRAT-HKTELFETAKLNCELKY 114

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
              ST +       S ++    ++   +I +A+   + L       I I   V+   G  
Sbjct: 115 ASFSTHDARSDYVESTKE----KDYSLIITQAIIGAIRLEKYPKAAIDIYILVLCDAGSA 170

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
             A+I  A +AL D    M D              VAA S                    
Sbjct: 171 LAASIVAASMALADAGVEMYDL-------------VAACSS------------------- 198

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                  M     I ++  + E    S  +    ++L  D    +  + K  + + +
Sbjct: 199 -------MPSHNEITQLLQTGE---LSYTNIVDGIDLCIDGCDKVYSIMKQNLIDSL 245


>gi|307331543|ref|ZP_07610655.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Streptomyces violaceusniger Tu
           4113]
 gi|306882814|gb|EFN13888.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Streptomyces violaceusniger Tu
           4113]
          Length = 752

 Score = 82.1 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 90/251 (35%), Gaps = 34/251 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNTK 55
           R+ GR    +R ++          GS L + G+T +L   T      +E+++      T+
Sbjct: 339 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQIL-GVTTLNMLRMEQQLDTLAPETR 397

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 398 KRYMH-NYNFPPYSTGETGRVGSPKRREIGHG----ALAERALLPVLPTREEFPYAIRQV 452

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            + + ++G T   ++  + ++L +                 LK  VA I+ G++      
Sbjct: 453 SEALSSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLISQEIDG 499

Query: 174 ------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                 + D+   ED+  D+D     T    +  +Q   +          A L  A+D  
Sbjct: 500 ETHYVTLTDILGAEDAFGDMDFKVAGTKQF-VTALQLDTKLDGIPASVLAAALKQARDAR 558

Query: 228 ADLIKLQKDVI 238
             ++ +  + I
Sbjct: 559 LHILDVMNEAI 569



 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 71/230 (30%), Gaps = 30/230 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTATL----EEKVPMWIRNTKHGWITAEYGM 65
           R I      +++ A GS +    D T +L+  T+    ++++  +             G 
Sbjct: 20  RTIRFETGRLARQAAGSAVAYLDDDTMVLSATTVSKNPKDQLDFFPLTVDVEERMYAAGR 79

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q++     +  D   
Sbjct: 80  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLY 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G +      ++ G  +    + E    
Sbjct: 134 DVVAINAASCSTQLAGL-------------PFSGPIGGTRVALIKGQWVAFPTHSELEEA 180

Query: 186 DVDANFVMT--DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
             D        + G +  +   AE    +Q     + + A+    +++  
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEA---TQQTIQLVKDGAEAPTEEIVAA 227


>gi|297837509|ref|XP_002886636.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332477|gb|EFH62895.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 302

 Score = 82.1 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 95/267 (35%), Gaps = 41/267 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GRQ  + R+  +   +   A+GS L K G T +L    +E   P    +   G I 
Sbjct: 36  LRPDGRQLGKARDTIVNLGLVSTADGSALAKIGSTTMLAAIRMEVMTPS-TDSPDEGCIA 94

Query: 61  AEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALG------SRQ 111
            E+ M P  +   R  R A +         I + +   +    ++DL  L       +  
Sbjct: 95  LEFHMPPICSPTVRPGRPADAAPV------ISKRLSDTILSSGMIDLKELCLVSGKAAWM 148

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHM-------------------------ED 146
             +D   + ADG    AA+  A  A  +    +                         ++
Sbjct: 149 GYLDIYCLDADGALFDAALLSAVAAFSNLQIPVVALNDNGRIVAITGGKDQDNASITEKE 208

Query: 147 CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
             NK +    LK    +++C +   Y + D    E+S +D     V+  S  +V    S 
Sbjct: 209 AVNKEKRKLTLKNIPFSLTCILHKTYILADPTTEEESIMDTLVTVVLDSSDQMVSFYKSG 268

Query: 207 ERATFSQDHFFAMLNLAKDRIADLIKL 233
             A        + + LA+ R  ++ ++
Sbjct: 269 GTALAYSPAIKSCVELARKRAKEVKQI 295


>gi|242786884|ref|XP_002480892.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
           putative [Talaromyces stipitatus ATCC 10500]
 gi|218721039|gb|EED20458.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
           putative [Talaromyces stipitatus ATCC 10500]
          Length = 284

 Score = 82.1 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 59/144 (40%), Gaps = 4/144 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ N++R +      +  + GS  +  G+T ++ T     +       T+   + 
Sbjct: 14  LRLDGRRWNELRLLQAQISTNSASSGSSYLSMGNTSIMCTVHGPHETSGAGSATE-ALVD 72

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +  +   +  +R +R   S RQ   S ++   +  A +S +         I +   V+ 
Sbjct: 73  IDVNIAGFAGVDRKRRAGGSDRQ---SSQLSTALKSAFQSHLHTYLYPHSTITVQVSVLS 129

Query: 121 ADGGTRTAAITGAWVALHDCLQHM 144
           +DG    AAI    +AL D    M
Sbjct: 130 SDGSLFAAAINACTLALVDAGIPM 153


>gi|328866292|gb|EGG14677.1| hypothetical protein DFA_10935 [Dictyostelium fasciculatum]
          Length = 282

 Score = 82.1 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 86/263 (32%), Gaps = 29/263 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR     R   L      +A GS  +   DTH+L     +   P  +     G +T
Sbjct: 22  LRNDGRTRLDYRPFELDIGEISHAVGSSRIILADTHILVGIKADISAPDPL-TPNKGSLT 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSR------QI 112
                 P ++     + A        + E+ + + R ++  + +DL  L          +
Sbjct: 81  FSVDCCPSASPEYEGKGA-----DYINIELAKQLERVMKDSNSMDLGGLCIMPGKYCWNL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ--VLKGHVAAISCGMLC 170
            ID  V+ + G    A   G   AL +        +     +    +     A+    + 
Sbjct: 136 YIDAIVLDSGGNLFDALSIGVRAALANTRLPTIRITQGEYSTVDFEVSDDPEAMQSLDID 195

Query: 171 GYP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
           G P            +VD    E+  +D      +   G+I  +Q               
Sbjct: 196 GVPINVTLTTIGNQFVVDCSGEEEQCMDARMTIGVNKRGNICGIQKGGVAG-IDAHTINQ 254

Query: 219 MLNLAKDRIADLIKLQKDVISNE 241
           M+  AK   ++++K   +V+ + 
Sbjct: 255 MILAAKQVGSEILKTMDNVLKDH 277


>gi|221114700|ref|XP_002158159.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 426

 Score = 81.7 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 69/240 (28%), Gaps = 29/240 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R  GR  N  R I++   +     GS  VK   T++L     E   P+       G + 
Sbjct: 22  FRTDGRSCNDYRAITVQTGIISNTSGSAQVKLAGTNVLIGVKAEISEPL-PSKPNLGKVE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS------RQIII 114
                   S       E   G     + E+   +       +DL  L          + I
Sbjct: 81  F------FSANASPIFEGRGG--DELAFELSAALQNTFSGAIDLEKLCIIPGKACWILYI 132

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQH-MEDCSNKFQLSQVLKGH------------V 161
           D  V++  G    A       ALH+     +       + S  +                
Sbjct: 133 DALVLECGGNLFDALSIAVKAALHNTRIPTLSIIGEGAEKSIEVSDDPYNSTPIDVSNIP 192

Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
             ++   +    IVD    E+   D      +   G++  VQ        + D  F ML 
Sbjct: 193 VLVTLNKVGERYIVDATAEEEICSDAQLLVSINQKGNVCSVQKHGSGG-INPDLLFEMLK 251


>gi|241582682|ref|XP_002403552.1| polyribonucleotide nucleotidyltransferase, putative [Ixodes
           scapularis]
 gi|215502222|gb|EEC11716.1| polyribonucleotide nucleotidyltransferase, putative [Ixodes
           scapularis]
          Length = 723

 Score = 81.7 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 67/192 (34%), Gaps = 8/192 (4%)

Query: 50  WIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS 109
             R  K       Y   P +T    +    SG  G R      +    LR +V       
Sbjct: 362 HFRGIKERNFMLHYEFPPYATNETGR----SGPTGRRELGHGALAEHGLRPLVPRDF--P 415

Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             I +  +V++++G +  A++ G  +AL D    ++  +    +  V           + 
Sbjct: 416 FTIRLTSEVLESNGSSSMASVCGGSMALMDAGVPIQAPAAGVAVGLVSLPDP-DQPHQLK 474

Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + DL   ED   D+D     T  G I  +Q   +            +  A +  ++
Sbjct: 475 DYRLLTDLLGIEDYLGDMDFKMAGTKKG-ITALQADIKLPGIPVKVVMEAIQQATEGKSE 533

Query: 230 LIKLQKDVISNE 241
           ++++  +VIS  
Sbjct: 534 ILRIMNEVISKP 545



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 73/218 (33%), Gaps = 23/218 (10%)

Query: 22  KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSG 81
           K+A+GS + + GDT ++ T   + K       T    +     M        V  E+ S 
Sbjct: 10  KFADGSAVAQIGDTSVMVTVVSKTKP---ASATFLPLLLRLLIMRLFGQSESVPHESQSR 66

Query: 82  RQGGR-SQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAWVALH 138
             G   +Q    ++ R+LR +         Q  + C+++  DG       ++  A  AL 
Sbjct: 67  LPGSSYAQHALDLLNRSLRPLFPAGYFYETQ--LMCNLLAVDGINDPDIVSLNAASAALS 124

Query: 139 DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH 198
                               G V A+  G++ G  +++             N ++T + H
Sbjct: 125 -------------VSDVPWGGPVGAVRVGLIDGDVVINPTRR--QMAQSSLNLIVTGAEH 169

Query: 199 IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              V   A         F   + L       +++  K+
Sbjct: 170 SQVVMLEASGDNVLLQDFQKAVRLGVKETQAIVRQIKE 207


>gi|172035539|ref|YP_001802040.1| polynucleotide phosphorylase/polyadenylase [Cyanothece sp. ATCC
           51142]
 gi|254782715|sp|B1WQ52|PNP_CYAA5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|171696993|gb|ACB49974.1| polyribonucleotide nucleotidyltransferase [Cyanothece sp. ATCC
           51142]
          Length = 715

 Score = 81.7 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 85/251 (33%), Gaps = 28/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----T 54
           +R+ GR+ +++R IS    +      GS L   G T + + ATL                
Sbjct: 323 IRVDGRKLDEVRPISCRVGLLPPRVHGSALFTRGLTQVFSLATLGTPGDAQDLGDDLHPE 382

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y   P S G      +   R+ G       +  RA+  V+         + +
Sbjct: 383 DEKRYLHHYNFPPFSVGETKPLRSPGRREIGHG----ALAERAILPVLPPQDEFPYVVRV 438

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V+ ++G T   ++ G+ +AL D                 +   V+  + G++     
Sbjct: 439 VSEVVSSNGSTSMGSVCGSTLALMDAGV-------------PIIKPVSGAAMGLIREGKE 485

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     TD+G I  +Q   +    S D     +  A      +
Sbjct: 486 VRILTDIQGIEDFLGDMDFKVAGTDTG-ITALQMDMKITGLSMDVVAKAIEQALPARLHI 544

Query: 231 IKLQKDVISNE 241
           +     VI   
Sbjct: 545 LDKMLAVIDQP 555



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 86/234 (36%), Gaps = 28/234 (11%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66
           R+I L   +    A G+ L++ GD    T   +               +T +Y       
Sbjct: 13  RDIRLKLGLLAPQAGGAVLIQSGD----TAVLVTATTTKGREGIDFLPLTVDYEERLYAA 68

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
            R  G  ++RE   GR   R+  I R+I R LR +         QII     +  +    
Sbjct: 69  GRIPGGFLRRE---GRPPERAILISRLIDRPLRPLFPNWWRNDIQIIATTLSMDEEVPPD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+TG+ +A+                     G +AA+  G++    I++  Y E    D
Sbjct: 126 VLAVTGSSIAVIQAQI-------------PFYGPMAAVRVGLIGDDFIINPTYREVENGD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           +D     +  G +V V+  A +    +      ++   + + DLI  Q +++  
Sbjct: 173 LDLVVAGSPDG-VVMVEAGANQ--LPEQDIIEAIDFGYEAVRDLIGAQYEIMEE 223


>gi|47218201|emb|CAF97065.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 556

 Score = 81.7 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 91/236 (38%), Gaps = 26/236 (11%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R++ ++   ++++A+GS +V+ G+T ++ TA   T             +    A  G +P
Sbjct: 1   RKLEISSGRLARFADGSAVVQLGETSVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 60

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
               N ++RE  +           R+I R++R +         Q++  C+++  DG    
Sbjct: 61  ---TNYLRRELGT---TDNEILTSRLIDRSVRPLFPAGYFYDTQVL--CNLLAVDG---- 108

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
                  V   D L      +          G + A+  G++ G  +++    E S+  +
Sbjct: 109 -------VNDPDVLAINAASAALALSDIPWNGPIGAVRVGLVDGELLINPTRAEMSSSTL 161

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVISNEV 242
           +       S  +V ++ SAE     Q  F   + +       +I  +Q+     +V
Sbjct: 162 NLVVSGGPSSQVVMIEASAENVL--QQDFCHAVKVGIKHTQQIIHAIQQLAREQKV 215



 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 14/130 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA---TLEEKVPM-----WIRN 53
           R  GR+   +R IS    + K   GS L + G T +L++    +LE  V        +  
Sbjct: 305 RCDGRELTALRNISCEVDLFKPLHGSALFQRGQTQVLSSVTFDSLESSVKADIITTALSG 364

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
            K       Y   P +T    K   ++ R+ G       +  +ALRSV+         I 
Sbjct: 365 IKDKNFMLHYEFPPYATNETGKVAGLNRRELGHG----ALAEKALRSVIPKEF--PFTIR 418

Query: 114 IDCDVIQADG 123
           +  +V++++G
Sbjct: 419 VTAEVLESNG 428


>gi|195168570|ref|XP_002025104.1| GL26867 [Drosophila persimilis]
 gi|194108549|gb|EDW30592.1| GL26867 [Drosophila persimilis]
          Length = 398

 Score = 81.7 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 72/207 (34%), Gaps = 33/207 (15%)

Query: 2   RLSGRQENQMREISLTRR--VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           RL GR+  + R++ LT          GS +V  GDT ++   T +   P   R    G +
Sbjct: 29  RLDGRKSGESRDVQLTFGGEY-----GSVVVSLGDTKVMAQVTCDMGTPTTSR-PNEGKL 82

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------ 111
                +   S  +     +V      RS  +  ++ R  R+   VDL +L          
Sbjct: 83  QLYVTLAGVSYLD-----SVQKTHDKRSLTLNSLLERTFRTSRCVDLESLCVASELHVWC 137

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQH--------MEDCSNKFQLSQVLKGHVAA 163
           I +D +V+  DG    A+      AL    +         +   + K +    L      
Sbjct: 138 IRVDVNVLNHDGNLYDASTVAVLAALMHFRRPDVTFTDGELRTYTEKERDMIPLLFLHYP 197

Query: 164 ISCGML----CGYPIVDLDYGEDSTID 186
           +S           P VD    E++T D
Sbjct: 198 VSVTYCIYTSNFQPFVDPTLLEENTAD 224


>gi|242022077|ref|XP_002431468.1| Exosome complex exonuclease RRP42, putative [Pediculus humanus
           corporis]
 gi|212516756|gb|EEB18730.1| Exosome complex exonuclease RRP42, putative [Pediculus humanus
           corporis]
          Length = 290

 Score = 81.7 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 76/263 (28%), Gaps = 30/263 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R  GR  ++ R I +   V  +A GS  ++  +T +L     E  V   I N   G I 
Sbjct: 22  FRYDGRTRSEYRPIEVETDVVSHANGSARLRLANTDILVGVKAEI-VKPTIENPDKGKIE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--------LRSVVDLSALGSRQI 112
                   +T    KR             +   + RA        L+S+  L      ++
Sbjct: 81  FFVDCSANATPAFEKRGGEDLAND-----LSSALTRAYSAPESLDLKSLCILPKFQCWKL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH--MEDCSNKFQLSQVLKGHVAAI------ 164
            +D  +++  G    A   G   AL +      +    +      V+             
Sbjct: 136 YVDVLILECGGNLFDAVGLGVKAALRNTFIPRVVAAALDGCDPELVISEDPYDCWRLDTS 195

Query: 165 ------SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
                 +   +  + +VD    E++            SG I  +       +        
Sbjct: 196 KTPVFVTVMRIGDHCVVDPGAEEEAVSGGGLLVSY-GSGSITSL-LKISGGSLHPITLRE 253

Query: 219 MLNLAKDRIADLIKLQKDVISNE 241
           M+ L       L    +  +  E
Sbjct: 254 MIQLGGSAGECLQDTLERALKEE 276


>gi|255582593|ref|XP_002532079.1| exosome complex exonuclease rrp43, putative [Ricinus communis]
 gi|223528261|gb|EEF30313.1| exosome complex exonuclease rrp43, putative [Ricinus communis]
          Length = 303

 Score = 81.7 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 95/269 (35%), Gaps = 34/269 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR   + R+ +L       A+GS + K G T ++    +E   P        G I 
Sbjct: 36  IRPDGRSLGRARDTTLALGAVVSADGSAIAKIGSTTMMAAIKMEVMTPSSES-PDEGCIA 94

Query: 61  AEYGMLPRSTG-NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL------GSRQII 113
            ++ M P  +   R  R A +      S+++   I  +  +++DL  L       +    
Sbjct: 95  IDFHMPPICSPLVRPGRPAEAAPVV--SKQLSDTIMSS--AMIDLKELSLVSGKAAWMAY 150

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHM----------------------EDCSNKF 151
           +D   + ADG    AA+  A  A  +    +                      ++  NK 
Sbjct: 151 LDIYCLDADGSLFDAALFSAVAAFTNLQIPIVSLNDDGKVVVVSDENEGGKREKEAVNKE 210

Query: 152 QLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
           +    L+    +++C +   Y + D    E+S ++     V+  S  +V           
Sbjct: 211 KRKLTLRSLPFSLTCVLHKNYILADPTAEEESIMETLVTVVLDSSARLVSFYKPGGPVLA 270

Query: 212 SQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                   + L + R+ +L  +  + +S 
Sbjct: 271 YTSAVQDCVALTRQRVKELQNILDEALSG 299


>gi|133919186|emb|CAL29641.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium
           mediterraneum]
          Length = 180

 Score = 81.7 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 8/175 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R+I     V     GS L   G+T  L  ATL         ++  G    
Sbjct: 7   RIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQYVDSLTGMYKE 66

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++  +      + +  +
Sbjct: 67  KFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPTADQFPYTLRVVSE 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           + +++G +  A + G  +AL D    +        +  + +G   A+   +L   
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFAVLSDILGDE 177


>gi|213402699|ref|XP_002172122.1| conserved hypothetical protein [Schizosaccharomyces japonicus
           yFS275]
 gi|212000169|gb|EEB05829.1| conserved hypothetical protein [Schizosaccharomyces japonicus
           yFS275]
          Length = 251

 Score = 81.7 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 73/235 (31%), Gaps = 30/235 (12%)

Query: 18  RRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKRE 77
              +  A G+  ++ G+  +  +                  +T E    P +   R    
Sbjct: 17  LGWTTKANGNAYLESGNIKIACSVFGPRPT-KTSSFHSIAKLTCELKFSPFAQTVRK--- 72

Query: 78  AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVAL 137
             S  Q    ++  + I R+L   + L       I +   ++++DG   T A      +L
Sbjct: 73  --SNVQDINERDFSQHIERSLAPSIMLHLYPKSSIDVYIQILESDGQLATIAAAITCASL 130

Query: 138 HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV----M 193
                 ++        S + K   A+          IVD +  ++   D   +F+    M
Sbjct: 131 AIANAKIDCIDIVTGASALYKQPSASC---------IVDPEESDERDADRSTSFMLVGYM 181

Query: 194 TDSGHIVEVQGSAERATFSQDHFFAML----NLAKD----RIADLIKLQKDVISN 240
              G + EV       + S      +L    ++A          L + +K  +  
Sbjct: 182 ASLGQVTEV---WTEGSLSSTDLSKLLEKCTDVASKTRLVANNVLAETEKKALEQ 233


>gi|332027278|gb|EGI67362.1| Exosome complex exonuclease RRP45 [Acromyrmex echinatior]
          Length = 390

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 82/267 (30%), Gaps = 41/267 (15%)

Query: 2   RLSGRQENQMR--EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           RL GR+  + R  +I  +        G C+V  G T  +   + + + P   R    G I
Sbjct: 23  RLDGRKLLEPRLAKIYFSSNW-----GCCMVSLGHTKAVAQVSCDIQQPKASR-PNEGMI 76

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALG---SRQII- 113
                + P +      +    GRQ   +  I R + +  +    VDL +L     +++  
Sbjct: 77  RINVELAPLA-----AQHFEGGRQSEAAILINRQLEKCFKDSKCVDLESLCIVADKKVWN 131

Query: 114 --IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV-----------LKGH 160
             ID ++I  DG     A      AL    +     + +  +                  
Sbjct: 132 LRIDINIINHDGNLVDCASIATLAALMHFHRPDVTSTGEEIIIHPASEKDFLPLTLFHYP 191

Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF---- 216
           V         G  I+D  Y E+     +    +     +  +       T +        
Sbjct: 192 VCISFITFKSGNTIMDPTYIEEKVGVAELTLGVNSYRELCSLHFDYLTKTMTVKDVISAV 251

Query: 217 -FAMLNLAKDRIADLIKLQKDVISNEV 242
                N A   +  +    K+ +  +V
Sbjct: 252 SNDAANYATKLVQQI----KEAVIKDV 274


>gi|194766922|ref|XP_001965573.1| GF22565 [Drosophila ananassae]
 gi|190619564|gb|EDV35088.1| GF22565 [Drosophila ananassae]
          Length = 412

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 82/259 (31%), Gaps = 34/259 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59
           RL GR+ N+ R++ LT      A+ G+  V  G+T +L   + +  VP   R N     +
Sbjct: 29  RLDGRRSNECRDVQLTFG----ADWGTVAVTLGETKVLAQVSSDIGVPTTARANEGKLQL 84

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------ 111
               G +          +        R   +  ++ R  RS   +DL +L          
Sbjct: 85  NVNIGGVAFL-------DEAQSTHDQRFLTLNSLLERTFRSSRCLDLESLCVAAEQHVWC 137

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHD--------CLQHMEDCSNKFQLSQVLKGHVAA 163
           + +D +V+  DG    A+      AL              +   + K +  Q L      
Sbjct: 138 VRVDINVLNHDGNLYDASTIATLAALMHYRRPDVTFAEDELRIYTEKEREFQPLLFLHYP 197

Query: 164 ISCGMLC----GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
           +S           PIVD    E++  D            +  +       T  +      
Sbjct: 198 VSVTYCIYKSSSQPIVDPSLLEENAADSVIVLSFNSYKELCTLNAGGSAPTNVRTIMQCA 257

Query: 220 LNLAKDRIADLIKLQKDVI 238
            N A      L+   +  +
Sbjct: 258 RNAATRS-KALVDFIRKAL 275


>gi|198471344|ref|XP_001355587.2| GA21908 [Drosophila pseudoobscura pseudoobscura]
 gi|198145876|gb|EAL32646.2| GA21908 [Drosophila pseudoobscura pseudoobscura]
          Length = 398

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 72/207 (34%), Gaps = 33/207 (15%)

Query: 2   RLSGRQENQMREISLTRR--VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           RL GR+  + R++ LT          GS +V  GDT ++   T +   P   R    G +
Sbjct: 29  RLDGRKSGESRDVQLTFGGEY-----GSVVVSLGDTKVMAQVTCDMGTPTTSR-PNEGKL 82

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------ 111
                +   S  +     +V      RS  +  ++ R  R+   VDL +L          
Sbjct: 83  QLYVTLAGVSYLD-----SVQKTHDKRSLTLNSLLERTFRTSRCVDLESLCVASELHVWC 137

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQH--------MEDCSNKFQLSQVLKGHVAA 163
           I +D +V+  DG    A+      AL    +         +   + K +    L      
Sbjct: 138 IRVDVNVLNHDGNLYDASTVAVLAALMHFRRPDVTFTDGELRTYTEKERDMIPLLFLHYP 197

Query: 164 ISCGML----CGYPIVDLDYGEDSTID 186
           +S           P VD    E++T D
Sbjct: 198 VSVTYCIYTSNFQPFVDPTLLEENTAD 224


>gi|133918785|emb|CAL29597.1| polyribonucleotide nucleotidyltransferase [Agrobacterium rubi]
          Length = 180

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 64/175 (36%), Gaps = 8/175 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR  + +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 7   RIDGRDLSTVRPIVSEVGMLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++         + +  +
Sbjct: 67  RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPSVEQFPYTLRVVSE 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           + +++G +  A + G  +AL D    +        +  +L+G   A+   +L   
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDE 177


>gi|323356776|ref|YP_004223172.1| polyribonucleotide nucleotidyltransferase [Microbacterium testaceum
           StLB037]
 gi|323273147|dbj|BAJ73292.1| polyribonucleotide nucleotidyltransferase [Microbacterium testaceum
           StLB037]
          Length = 765

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 90/252 (35%), Gaps = 34/252 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R +    +V     GS + + G+T +L   T      +E+++      T
Sbjct: 351 VRMDGRGLADIRPLDAEVQVIPRVHGSAIFQRGETQIL-GVTTLNMLKMEQQIDSLSPIT 409

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              ++   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 410 SKRYLH-HYNFPPYSTGETGRVGSPKRREIGHGF----LAERALVPVLPSREEFPYAIRQ 464

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP- 173
             + + ++G T   ++  + ++L +                 L+  VA I+ G++     
Sbjct: 465 VSEALGSNGSTSMGSVCASTLSLLNAGV-------------PLRAPVAGIAMGLVTDEVD 511

Query: 174 -------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                  + D+   ED+  D+D     T    I  +Q   +          A L  AK+ 
Sbjct: 512 GQTRYAALTDILGAEDALGDMDFKVAGTAEF-ITAIQLDTKLDGIPSSVLAAALTQAKEA 570

Query: 227 IADLIKLQKDVI 238
              ++ +    I
Sbjct: 571 RLTILNVLNAAI 582



 Score = 44.7 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 57/177 (32%), Gaps = 16/177 (9%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA-A 129
           G+  +RE   GR    +  + R+I R LR           QI++    I A G    A A
Sbjct: 83  GSFFRRE---GRPSTEAILVCRLIDRPLRPSFVDGLRNEVQIVVTVLSI-APGEFYDALA 138

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVL-----KGHVAAISCGMLCGYPIVDLDYGEDST 184
           I  A ++               +L+ +           A          + DL       
Sbjct: 139 INAASMSTQISGLPFSGPIAGVRLALIPGHGEHADQWVAFPKAEQLEDAVFDLIVAGRVL 198

Query: 185 IDVDANFVMTD----SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            D D   +M +     G    ++G A +    +      L  AK  +  L+  Q +V
Sbjct: 199 DDGDVAIMMVEAEATEGSWNLIKGGATKPN--EQVVAEGLEAAKPFLRQLVDAQNEV 253


>gi|311898696|dbj|BAJ31104.1| putative guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Kitasatospora setae KM-6054]
          Length = 736

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 90/252 (35%), Gaps = 34/252 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R ++          GS L + G+T +L   T      +E+++      T
Sbjct: 338 VRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQIL-GVTTLNMLRMEQQLDTLSPET 396

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +  ++   Y   P S G   +  +   R+ G       +  RA+  V+         I  
Sbjct: 397 RRRYMH-NYNFPPYSVGETGRVGSPKRREIGHG----ALAERAILPVLPTREEFPYAIRQ 451

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP- 173
             + + ++G T   ++  + ++L +                 LK  VA I+ G++     
Sbjct: 452 VSEALGSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLISQEID 498

Query: 174 -------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                  + D+   ED+  D+D     T    I  +Q   +          A L  AKD 
Sbjct: 499 GETHYVTLTDILGAEDAYGDMDFKVAGTRDF-ITALQLDTKLDGIPASVLAAALKQAKDA 557

Query: 227 IADLIKLQKDVI 238
              ++ +  + I
Sbjct: 558 RLHILDVMNEAI 569



 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 76/241 (31%), Gaps = 43/241 (17%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      +++ A GS +    D T +L+  +     +E    +             G 
Sbjct: 20  RTIRFETGRLARQAAGSAVAYLDDDTMVLSATSASKQPKEHFDFFPLTVDVEERMYAAGR 79

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q+++    +  D   
Sbjct: 80  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFVKGLRNEIQVVVTVMALNPDHLY 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G +  +   ++ G  +    + E  + 
Sbjct: 134 DVVAINAASASTQLAGL-------------PFSGPIGGVRVALINGQWVAFPTHSELESA 180

Query: 186 ------------DVDANFVMTDS----GHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
                       D D   +M ++      I  V+G AE    +++   A L  AK  I  
Sbjct: 181 VFDMVVAGRALPDGDVAIMMVEAEATTKTIQLVEGGAEAP--TEEVVAAGLEAAKPFIKV 238

Query: 230 L 230
           L
Sbjct: 239 L 239


>gi|148679539|gb|EDL11486.1| mCG3764 [Mus musculus]
          Length = 253

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 17/131 (12%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---------- 55
           R   ++R +     +   A+GS  ++ G T +L   +   +     R +           
Sbjct: 31  RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGSGPAGAGGEAPA 90

Query: 56  --HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
              G +  ++   P S   R +R    G  GG  +E+   +  AL   V L      Q+ 
Sbjct: 91  ALRGRLLCDFRRAPFS--GRRRRAPQGG--GGEDRELGLALQEALEPAVRLGRYPRAQLE 146

Query: 114 IDCDVIQADGG 124
           +   +++ DGG
Sbjct: 147 VSALLLE-DGG 156


>gi|321478855|gb|EFX89812.1| hypothetical protein DAPPUDRAFT_40604 [Daphnia pulex]
          Length = 279

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 97/260 (37%), Gaps = 30/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  ++ R+  +T        G C V  G+T ++   +   +VP   R    G +  
Sbjct: 23  RVDGRSLSEQRKTCITFGTEW---GCCQVLLGNTRVMAQVSCSVQVPKSSR-ANEGMLFI 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALG------SRQII 113
              M   +          +GR G +  E+ R++ R ++    +DL +L       + ++ 
Sbjct: 79  NVEMSTMAAE-----HFEAGRLGQQGIEVNRLVERCIKDSRCIDLESLCILVEEQAWEVR 133

Query: 114 IDCDVIQADGGTRTAAITG------------AWVALHDCLQHMEDCSNKFQLSQVLKGHV 161
           +D  ++  +G    AA                 +   D + H  D  +   L+ +L   +
Sbjct: 134 VDIHILNHEGNLIDAATLAALGALCHFKRPDVTLDGRDVIIHQLDERDPVPLT-ILHHPL 192

Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
                    G  ++D    E+ + D      +     +  +Q S +     ++   +  N
Sbjct: 193 TLSFALFNQGICVLDPTNLEERSADGKLVMGLNAYRELCTLQISGDGVFIHKEAVISCAN 252

Query: 222 LAKDRIADLIKLQKDVISNE 241
           +A  R   ++++ K  ++++
Sbjct: 253 VAASRAVQMVEMLKKSLADD 272


>gi|167392472|ref|XP_001740171.1| exosome complex exonuclease RRP45 [Entamoeba dispar SAW760]
 gi|165895849|gb|EDR23438.1| exosome complex exonuclease RRP45, putative [Entamoeba dispar
           SAW760]
          Length = 244

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 68/228 (29%), Gaps = 35/228 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMWIRNTKHGW 58
           +R+  R+ ++ RE+S          GS     G++  L        E V         G 
Sbjct: 12  IRIDARKLDEFREVS----FVCREPGSVETHIGNSKALGECVV---EPVSPGRSRPDQGI 64

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL---RS------VVDLSALGS 109
                  L  +  N                EI +++ R L   R+      V+    L  
Sbjct: 65  FNIRVNFLEMANPNFYDSRGPRDL-----IEIGKVVERGLLSTRAIDVDGLVIIRGKL-V 118

Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQ----------HMEDCSNKFQLSQVLKG 159
            +I +   +I   G         A  AL   ++           +     +  +   +  
Sbjct: 119 WKITVCVHIINDCGNLMDLVSITAISALLTAVRREVQICGTDVKILTPEERKPVPLAIHH 178

Query: 160 HVAAISCGMLC-GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
               +S G+   G P++D    E+S         +   G +  VQ S 
Sbjct: 179 IPITVSFGITDSGVPLLDPSEREESVCKSRLTIAINKEGEVCAVQKSG 226


>gi|28572501|ref|NP_789281.1| polynucleotide phosphorylase/polyadenylase [Tropheryma whipplei
           TW08/27]
 gi|81628250|sp|Q820Y9|PNP_TROW8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|28410633|emb|CAD67019.1| mRNA processing exonuclease [Tropheryma whipplei TW08/27]
          Length = 735

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 84/239 (35%), Gaps = 34/239 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNTK 55
           R+ GR  + +R +    +V     GS + + G+T +L   T      +E+++        
Sbjct: 350 RMDGRGLSDIRPLDAEVQVVPRVHGSAVFQRGETQVL-GVTTLNMLKMEQQIDSLAPIVS 408

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I   Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 409 KRYIH-HYNFPPYSTGEVGRVGSPKRREIGHGF----LAERALVPVLPSREDFPYAIRQV 463

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            + + ++G T   ++  + ++L +                 L+  VA I+ G++ G    
Sbjct: 464 SEALGSNGSTSMGSVCASTLSLLNAGV-------------PLRAPVAGIAMGLISGRVDG 510

Query: 174 ------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                 + D+   ED+  D+D     T    I  +Q   +            L  A+  
Sbjct: 511 EMRYVTLTDISGSEDALGDMDFKVAGTSDF-ITALQLDTKLDGIPAHVLSEALAHARSA 568



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 90/257 (35%), Gaps = 47/257 (18%)

Query: 12  REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGM 65
           R I      +++ A+GS +    G+T LL++ ++    +E    +         +   G 
Sbjct: 16  RTIRFETGRLARQAQGSVVAYLDGETMLLSSTSVGKQPKEDCDFFPLTVDVEERSYAAGK 75

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR   +       Q+I+    I      
Sbjct: 76  IP---GSYFRRE---GRPSTEAILACRLIDRPLRPSFNAGLRNEVQVIVTVLSI------ 123

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
                  A    ++ L      ++         G +  +   ++ G  +    Y ED + 
Sbjct: 124 -------APGEFYEALAINAASASTLVSGLPFSGPIGGVRLALIDGQWVAFPRY-EDLSG 175

Query: 186 DV-DANFVM----TDSGH----IVEVQGSAERATFS-----------QDHFFAMLNLAKD 225
            V D          +SG     I+ V+  A    +            ++     +  AK 
Sbjct: 176 AVFDLTVAGRVFVNESGKEDIAIMMVEAEATEPAWDLIHSHGAKKPNEEVIEEGIESAKV 235

Query: 226 RIADLIKLQKDVISNEV 242
            I  L  +Q+D +++++
Sbjct: 236 FIRTLCDIQRD-LASKL 251


>gi|291226757|ref|XP_002733360.1| PREDICTED: exosome component 5-like, partial [Saccoglossus
           kowalevskii]
          Length = 198

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 60/185 (32%), Gaps = 29/185 (15%)

Query: 10  QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
           ++R  S  + +    +GS     GDT ++       +V                  L ++
Sbjct: 12  ELRSQSCEQNLLSRPDGSATYCQGDTSVIVAVYGPAEVKQSK------------EFLDKA 59

Query: 70  TGNRVKREAVSGRQ-GGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
           T   + +  V       + QE  R+I     ++V  +      I I   V+   G   + 
Sbjct: 60  TLEVIFKPKVGIPGCSEKFQE--RLIRNTCETIVLTALHPRSSINIIIQVMHNAGSLLSC 117

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDV 187
            +    +AL D    M                VAA++C +   G  I+D    ++     
Sbjct: 118 CVNSTCMALLDAGLPM-------------SCLVAAVTCSLSCDGDIILDPTSQQEKEAKA 164

Query: 188 DANFV 192
              FV
Sbjct: 165 ILTFV 169


>gi|46122263|ref|XP_385685.1| hypothetical protein FG05509.1 [Gibberella zeae PH-1]
          Length = 293

 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 74/229 (32%), Gaps = 34/229 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           +RL GR+ ++ R + +T       +  G   VK+G T +L   + E  VP +      G 
Sbjct: 23  LRLDGRKFDEFRPLEITFG-----DEYGVAEVKYGKTRVLAKVSAEVTVP-YTDRPFDGV 76

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGS------R 110
            T    + P    +         R       + R++ + +R    +D  +L         
Sbjct: 77  FTITSELSPMVAPSY-----EVNRPSLEEVLLSRLLEKTIRRSGALDTESLCLIAGKKCW 131

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGH 160
            I +D  V+  DG    AA      AL    +           +   + +  +       
Sbjct: 132 SIRVDLHVLAHDGNLTDAACVAVIAALRHFRKPDSSIEGETLTIYTPAEREPVPLSWLHS 191

Query: 161 VAAISCGMLCG---YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
              ++           +VD ++ E+        + +   G I ++    
Sbjct: 192 PFCVTYSFYGEDGSQVLVDTNWLEEKMRVSHCTYSLNKHGEISQISKLG 240


>gi|28493388|ref|NP_787549.1| polynucleotide phosphorylase/polyadenylase [Tropheryma whipplei
           str. Twist]
 gi|81437795|sp|Q83G94|PNP_TROWT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|28476429|gb|AAO44518.1| polyribonucleotide nucleotidyltransferase [Tropheryma whipplei str.
           Twist]
          Length = 738

 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 84/239 (35%), Gaps = 34/239 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNTK 55
           R+ GR  + +R +    +V     GS + + G+T +L   T      +E+++        
Sbjct: 353 RMDGRGLSDIRPLDAEVQVVPRVHGSAVFQRGETQVL-GVTTLNMLKMEQQIDSLAPIVS 411

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             +I   Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 412 KRYIH-HYNFPPYSTGEVGRVGSPKRREIGHGF----LAERALVPVLPSREDFPYAIRQV 466

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            + + ++G T   ++  + ++L +                 L+  VA I+ G++ G    
Sbjct: 467 SEALGSNGSTSMGSVCASTLSLLNAGV-------------PLRAPVAGIAMGLISGRVDG 513

Query: 174 ------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                 + D+   ED+  D+D     T    I  +Q   +            L  A+  
Sbjct: 514 EMRYVTLTDISGSEDALGDMDFKVAGTSDF-ITALQLDTKLDGIPAHVLSEALAHARSA 571



 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 91/257 (35%), Gaps = 47/257 (18%)

Query: 12  REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGM 65
           R I      +++ A+GS +    G+T LL++ ++    +E    +         +   G 
Sbjct: 19  RTIRFETGRLARQAQGSVVAYLDGETMLLSSTSVGKQPKEDCDFFPLTVDVEERSYAAGK 78

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR   +       Q+I+    I      
Sbjct: 79  IP---GSYFRRE---GRPSTEAILACRLIDRPLRPSFNAGLRNEVQVIVTVLSI------ 126

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
                  A    ++ L      ++         G +  +   ++ G  +    Y ED + 
Sbjct: 127 -------APGEFYEALAINAASASTLVSGLPFSGPIGGVRLALIDGQWVAFPRY-EDLSG 178

Query: 186 DV-DANFVM----TDSGH----IVEVQGSAERATFS-----------QDHFFAMLNLAKD 225
            V D          +SG     I+ V+  A  + +            ++     +  AK 
Sbjct: 179 AVFDLTVAGRVFVNESGKEDIAIMMVEAEATESAWDLIHSHGAKKPNEEVIEEGIESAKV 238

Query: 226 RIADLIKLQKDVISNEV 242
            I  L  +Q+D +++++
Sbjct: 239 FIRTLCDIQRD-LASKL 254


>gi|124514000|ref|XP_001350356.1| exosome complex exonuclease, putative [Plasmodium falciparum 3D7]
 gi|23615773|emb|CAD52765.1| exosome complex exonuclease, putative [Plasmodium falciparum 3D7]
          Length = 477

 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 92/261 (35%), Gaps = 30/261 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR     R + +     K   G   +  G T ++   T  E V    R  K G + 
Sbjct: 19  IRLDGRTFEDSRNVCI--NFLKD-YGHVEISIGFTKVICKIT-SEIVKPHDRKLKEGILK 74

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL---GSRQII-- 113
               +      N       S        EI+ +I R L++  +++  +L     +++   
Sbjct: 75  INLDIDNFIEDNEN-----SDNMSDECLEIKNIIDRVLKTSNIINFESLCIIPGKKVWCI 129

Query: 114 -IDCDVIQADGGTRTAAITGAWVALHDC------------LQHMEDCSNKFQLSQVLKGH 160
            I+  VI+ DG    A    A+  L               +   ++  N   LS +    
Sbjct: 130 CINIMVIENDGNLTDACYLSAYCGLVHFKNHQVRVIKNGDIIIDKEEINYSPLSILNSPI 189

Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           V   +        ++D    E+  +    +  +  +G+++ +         +  H    +
Sbjct: 190 VTTFAYYEEHDVCLIDPCLHEEEFMSSKISIALNKNGNLISLLKPG-GIPLACSHIMESI 248

Query: 221 NLAKDRIADLIKLQKDVISNE 241
            +AK RI  ++K+ +D +  +
Sbjct: 249 EIAKKRILTILKILEDTLEED 269


>gi|197127157|gb|ACH43655.1| putative exosome component 5 [Taeniopygia guttata]
          Length = 224

 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 70/232 (30%), Gaps = 35/232 (15%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
            GR    +R  S    +    +GS     GDT +L       +  +         +    
Sbjct: 12  DGRCR--LRRFSCELGLLSRPDGSAAFLQGDTSVLAGLYGPAEAKISKELPDRAALDV-- 67

Query: 64  GMLPRSTGNRVKREAVSGRQG--GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
                     + R  V G  G   RS+E  +++ +   +VV         I +   V+  
Sbjct: 68  ----------LLRPKV-GLPGVLERSRE--QLLQQTCEAVVLGVLHPRTAISLVLQVLSD 114

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYG 180
            G   +  +  A +AL D    +                   ++C +   G  ++D    
Sbjct: 115 AGSLLSCCLNAACMALLDAGLPLSAL-------------FCGVTCALQPDGAILLDPTAR 161

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++        F +  +   V +  +  + + S       L  A+     + +
Sbjct: 162 QEQEARAVLTFAIASADRKVLMVTT--KGSCSVQEMQQCLAAAQRAADTIFQ 211


>gi|194751933|ref|XP_001958278.1| GF10840 [Drosophila ananassae]
 gi|190625560|gb|EDV41084.1| GF10840 [Drosophila ananassae]
          Length = 325

 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 81/248 (32%), Gaps = 37/248 (14%)

Query: 12  REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWITAEYGMLPRST 70
           R+  +   V     GS  +++G+T +L       ++     R    G I         +T
Sbjct: 48  RKTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPHELMRASARRMNMGVINCYVNFAAFAT 107

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G     E+V      R + +  M+ +AL  VV  +   + Q+ I   ++  DG   + AI
Sbjct: 108 GEL---ESVP----ERERHLGSMLTKALEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAI 160

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL-DYGED------- 182
               VAL +C     D              + A +  +   +  ++     E+       
Sbjct: 161 NCCGVALVECGISTYDL-------------ITASTACIYRNHVFLNPSSKVEELLWKHRG 207

Query: 183 ---STIDVDAN-----FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
                    A       +        ++    +    S + +  +L+        L +L 
Sbjct: 208 VQIEAASGSAPEEHGLVITASMDTFDQIAQCQQCGYLSPETYVKLLDYTLAVNKSLRQLI 267

Query: 235 KDVISNEV 242
           + V++  V
Sbjct: 268 RQVLTTRV 275


>gi|67585452|ref|XP_665105.1| exosome complex exonuclease RRP41 [Cryptosporidium hominis TU502]
 gi|54655533|gb|EAL34876.1| exosome complex exonuclease RRP41 [Cryptosporidium hominis]
          Length = 140

 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 17/138 (12%)

Query: 1   MRLSGRQENQMREISL------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT 54
           +R  GR+  ++R I         R +    +G+   + G   L+ +      +   I  T
Sbjct: 10  IRQDGRKLTEIRRIKCIINEGNQRGIE---DGNVYFEQGQNKLIVSIIGPVPISGNINYT 66

Query: 55  KHG---WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
            +     I   + + P S+ +R KR    G+      E   +I R   SV+        Q
Sbjct: 67  NNNSGVQINCNFRVSPFSSQDRRKR----GKNDRFCIESGLIISRTFSSVIC-DQYSKSQ 121

Query: 112 IIIDCDVIQADGGTRTAA 129
           III+  +++ DG  R+A 
Sbjct: 122 IIINIIILEGDGSVRSAC 139


>gi|239982654|ref|ZP_04705178.1| polynucleotide phosphorylase/polyadenylase [Streptomyces albus
           J1074]
 gi|291454495|ref|ZP_06593885.1| polynucleotide phosphorylase/polyadenylase [Streptomyces albus
           J1074]
 gi|291357444|gb|EFE84346.1| polynucleotide phosphorylase/polyadenylase [Streptomyces albus
           J1074]
          Length = 735

 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 87/250 (34%), Gaps = 30/250 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R ++          GS L + G+T +L   TL     E+    +     
Sbjct: 338 VRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 397

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 398 KRYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPTREEFPYAIRQVS 453

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
           + + ++G T   ++  + ++L +                 LK  VA I+ G++       
Sbjct: 454 EALGSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLISQEIDGE 500

Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T +  +  +Q   +          A L  A+D   
Sbjct: 501 THYVTLTDILGAEDAFGDMDFKVAGTKTF-VTALQLDTKLDGIPASVLAAALKQARDARL 559

Query: 229 DLIKLQKDVI 238
            ++ +  + I
Sbjct: 560 HILDVMNEAI 569



 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 73/245 (29%), Gaps = 39/245 (15%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      ++K A GS +    D T +L+  T     ++++  +             G 
Sbjct: 20  RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKKPKDQLDFFPLTVDVEERMYAAGK 79

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           QI+     +  D   
Sbjct: 80  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFRKGLRNEIQIVETIMALNPDHLY 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G +      ++ G  +    + E    
Sbjct: 134 DVVAINAASCSTQLAGL-------------PFSGPIGGTRVALINGQWVGFPTHTELEDA 180

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
             D              I+ V+  A   T           +++   A L  AK  I  L 
Sbjct: 181 VFDMVVAGRVLDDGDVAIMMVEAEATEKTIQLVKDGAAAPTEEVVAAGLEAAKPFIKALC 240

Query: 232 KLQKD 236
           K Q +
Sbjct: 241 KAQSE 245


>gi|297285946|ref|XP_002802903.1| PREDICTED: exosome complex exonuclease RRP42-like [Macaca mulatta]
          Length = 556

 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 77/263 (29%), Gaps = 29/263 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R + +   V     GS  VK G T +L     E   P  +     G++ 
Sbjct: 22  LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QI 112
                   +T     R            EI   + R    +S VDL  L          +
Sbjct: 81  FFVDCSANATPEFEGRGG-----DDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ--VLKGHVAAISCGMLC 170
            +D  +++  G    A       AL +            + S+   L           + 
Sbjct: 136 YVDVLLLECGGNLFDAISIAVKAALFNTSIPRVRVLEDEEGSKDIELSDDPYDCIRLSVE 195

Query: 171 GYP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
             P            +VD    E++         +T  G +  ++    + +   +  F 
Sbjct: 196 NVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVG-KGSLDPESIFE 254

Query: 219 MLNLAKDRIADLIKLQKDVISNE 241
           M+   K     L    + V+  E
Sbjct: 255 MMETGKRVGKVLHASLQSVLHKE 277


>gi|332670053|ref|YP_004453061.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Cellulomonas fimi ATCC 484]
 gi|332339091|gb|AEE45674.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Cellulomonas fimi ATCC 484]
          Length = 742

 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 87/244 (35%), Gaps = 18/244 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
            R+ GR    +R +S    V     GS + + G+T +L   T      +E+++      T
Sbjct: 338 FRIDGRGLRDIRTLSAEVEVLPRVHGSAIFERGETQIL-GVTTLNMLRMEQQLDTLSPET 396

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +  ++   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 397 RKRYMH-NYNFPPYSTGETGRVGSPKRREIGHG----ALAERALMPVLPSREEFPYAIRQ 451

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             + + ++G T   ++  + ++L +    +        +     G V+    G      +
Sbjct: 452 VSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAM-----GLVSDTVDGETRYAAL 506

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED+  D+D     T    +  +Q   +            L  AK+    ++ + 
Sbjct: 507 TDILGAEDAFGDMDFKVAGTREF-VTAIQLDTKLDGIPASVLGGALTQAKEARLAILDVI 565

Query: 235 KDVI 238
            + I
Sbjct: 566 AEAI 569



 Score = 66.3 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 59/179 (32%), Gaps = 29/179 (16%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  +RE   GR    +    R++ R LR +         Q++I    I  D    T AI
Sbjct: 83  GSFFRRE---GRPSTEAILACRLVDRPLRPLFVKGLRNEVQVVITVLAIHPDDAYDTLAI 139

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
             A ++                      G V  +   ++ G  +    Y E      D  
Sbjct: 140 NAASISTQLSGL-------------PFSGPVGGVRIALVDGQWVAFPRYSERERATFDMV 186

Query: 191 F---VMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQKD 236
               V+ D   I  ++  A   ++          +++     L  AK  I  L++ Q++
Sbjct: 187 VAGRVVGDDVAIAMIEAEAPEKSWNLIQEGATAPTEEVVAQGLEAAKPFIKVLVEAQQE 245


>gi|152965434|ref|YP_001361218.1| polynucleotide phosphorylase/polyadenylase [Kineococcus
           radiotolerans SRS30216]
 gi|187610277|sp|A6W815|PNP_KINRD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|151359951|gb|ABS02954.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Kineococcus radiotolerans
           SRS30216]
          Length = 746

 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 83/242 (34%), Gaps = 14/242 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R +S    V     GS L + G+T +L   TL     E+    +     
Sbjct: 344 VRIDGRGLADIRTLSAEVEVLPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 403

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 404 KRYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPAREDFPYAIRQVS 459

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  + ++L +    +        +     G ++    G      + D
Sbjct: 460 EALGSNGSTSMGSVCASTLSLLNAGVPLRAAVAGIAM-----GLISDTVDGETRYAALTD 514

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    +  +Q   +            L  A+D    ++ +  +
Sbjct: 515 ILGAEDAFGDMDFKVAGTKEF-VTAIQLDTKLDGIPASVLAGALTQARDARLHILDVMAE 573

Query: 237 VI 238
            I
Sbjct: 574 AI 575



 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 81/246 (32%), Gaps = 44/246 (17%)

Query: 12  REISLTRR-VSKYAEGSCLVKF-GDTHLL----TTATLEEKVPMWIRNTKHGWITAEYGM 65
           R I      ++K A GS  V   G++ LL       + +++   +         +   G 
Sbjct: 21  RTIRFETGRLAKQAAGSAAVYLDGESFLLSATTAGKSPKDQFDFFPLTVDVEERSYAAGK 80

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q+++    +  D   
Sbjct: 81  IP---GSFFRRE---GRPSTEAILTCRLIDRPLRPSFVKGLRNEVQVVVSVMALHPDDAY 134

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A ++                      G +  +   ++ G  +    Y E    
Sbjct: 135 DVVAINVASLSTQLSGL-------------PFSGPIGGVRIALIDGQWVAFPRYSELERA 181

Query: 186 DVDAN----FVMTDSG----HIVEVQGSAERATF-----------SQDHFFAMLNLAKDR 226
             D       V T  G     I+ V+  A   ++           +++   A L  AK  
Sbjct: 182 VFDMVVAGRVVTTADGSQDVAIMMVEAEATEGSWNLIKDQGATAPTEEVVAAGLEAAKPF 241

Query: 227 IADLIK 232
           IA+L++
Sbjct: 242 IAELVR 247


>gi|19113410|ref|NP_596618.1| exosomal 3'-5' exoribonuclease, PH-like [Schizosaccharomyces pombe
           972h-]
 gi|74638748|sp|Q9P7R3|MTR3_SCHPO RecName: Full=Exosome complex component mtr3
 gi|6983772|emb|CAB75416.1| exosomal 3'-5' exoribonuclease, PH-like [Schizosaccharomyces pombe]
          Length = 257

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 65/203 (32%), Gaps = 24/203 (11%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R  ++ R+I L    +  A GS   +     +  T +       +   +    +  E+ +
Sbjct: 30  RDVDRCRKIYLKLGWATKAVGSSYFESEKIKIACTVSGPRPSKTFAFRS-SAKLNCEFRL 88

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
            P ST  R         +        +MI  A+   + L       I +   VI++DG  
Sbjct: 89  SPFSTSVRQGHVQTVEEKS-----YSQMIEAAISPSILLHLYPKSSIDVYIQVIESDG-- 141

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC---GYPIVDLDYGED 182
                     AL      +   S+    + +    +   S  +         +D DY ++
Sbjct: 142 ----------ALATLAAAISCASSAIADANIDCIDLVTGSSVLFNPNTDEYWIDPDYVDE 191

Query: 183 STIDVDANFVMTDS---GHIVEV 202
                  + VM      GH+ +V
Sbjct: 192 RARAAKGSVVMGYMASLGHVTQV 214


>gi|302854926|ref|XP_002958966.1| hypothetical protein VOLCADRAFT_108396 [Volvox carteri f.
           nagariensis]
 gi|300255681|gb|EFJ39971.1| hypothetical protein VOLCADRAFT_108396 [Volvox carteri f.
           nagariensis]
          Length = 516

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 88/274 (32%), Gaps = 54/274 (19%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR+   +R+      +      S  V  G T +L+  T   +VP +      G +  
Sbjct: 27  RLDGRRPYDLRKPKFQFSLDDR---SATVALGSTRVLSVVTASLEVP-FPDRPSEGPLRF 82

Query: 62  EYGMLPRSTG----NRVKR----------------------EAVSGRQGGRSQE----IQ 91
                P ++      R  R                      E +  R   R  E    I 
Sbjct: 83  NVEFSPMASPAFEPGRPGRQGEAWDPTQGLGLGLGRRRRFSELLRRRPSCRGCEDAIQIA 142

Query: 92  RMIGRALRS--VVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN 149
           R+I R LR    VD  AL        C V     G R   +     +  D L H  +   
Sbjct: 143 RLIERGLRQSGAVDQEAL--------CVV----AG-RKPEVEVGGESGTDILVHPPEVRE 189

Query: 150 KFQLSQVLKGHVAAISCGMLCGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207
              L+  +     A++ G+  G    +VD  + E++        VM     +  V   A+
Sbjct: 190 PLPLT--IHHLPVAVTFGLFQGGDLLVVDPSWREEAAASGSCTVVMNPGREVCCVHK-AD 246

Query: 208 RATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
               + D F   + LA D+   L+   K  +   
Sbjct: 247 GIGLTPDQFMRCVRLAGDKAEQLVADLKAALEQH 280


>gi|217073740|gb|ACJ85230.1| unknown [Medicago truncatula]
          Length = 286

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 84/258 (32%), Gaps = 34/258 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+    R I +   V   A GS  V+ G T ++ +   E   P  ++    G ++
Sbjct: 20  LRCDGRKRLTYRPILVETGVIPQANGSARVRIGATEVIASVKAELGKPSLMQ-PDKGKVS 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL-------RSVVDLSALGSRQ-- 111
                   +      R A        S ++   + R L        + +D S+L   +  
Sbjct: 79  IYIDCSSTAEPAFEGRGA-----DWLSADLSNALQRCLLGAKSGAGAAIDRSSLVVVEGK 133

Query: 112 ----IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA---- 163
               + ID  V+ +DG           VAL          +      +  +  V+     
Sbjct: 134 ICWDLYIDGLVVSSDGNLLDTLGAAIKVALSSTGIPKVQIAAGASSDEQPEVDVSDEDFM 193

Query: 164 ----------ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
                     ++   +  + IVD    E+S +    +  +   GHI  V      A    
Sbjct: 194 QFDTSGIPVIVTLTKVGKHYIVDATPEEESQMSSAVSISINRQGHICGVTKRG-GAGLDP 252

Query: 214 DHFFAMLNLAKDRIADLI 231
                M+++AK     LI
Sbjct: 253 SVILDMVSVAKHVSEQLI 270


>gi|281206474|gb|EFA80660.1| hypothetical protein PPL_06243 [Polysphondylium pallidum PN500]
          Length = 278

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 87/264 (32%), Gaps = 34/264 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---HG 57
           +R  GR   ++R  +++      A+GS  VK G+T ++     E       + T      
Sbjct: 21  VRPDGRSLQRIRNTTVSAGSILTADGSSFVKIGNTSVICGVRAEIAEKQQDQTTSNTCKS 80

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            I     M P  +         S +   ++  +       L  +V L  +  +Q+  D D
Sbjct: 81  QIIVNIEMGPICSNI-----FSSTKPSEKAMSLCTQ----LNQLVQLLDIDPKQLYFDVD 131

Query: 118 ------------VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF---------QLSQV 156
                        +  +G    AAI     AL +        S+             + +
Sbjct: 132 GKYLWYLYVDLYCLDYNGNILDAAIIAMLSALKNVKLPKGVVSDDGSEVYKEEDTMRTLI 191

Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
           +  ++  +S  ++  Y + D    E+   +   + V  +   +  +Q  +      +   
Sbjct: 192 INSYLIPLSFAVIDEYVLSDPSLEEEKLSNGSISIVYNEKRELC-LQLYSGITPLDEKTL 250

Query: 217 FAMLNLAKDRIADLIKLQKDVISN 240
              L+  K R  ++  L    I++
Sbjct: 251 QQCLDQTKQRTQEIKDLIDQSIND 274


>gi|217073628|gb|ACJ85174.1| unknown [Medicago truncatula]
          Length = 286

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 85/258 (32%), Gaps = 34/258 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+    R I +   V   A GS  V+ G T ++ +   E   P  ++    G ++
Sbjct: 20  LRCDGRKRLTYRPILVETGVIPQANGSARVRIGATEVIASVKAELGKPSLMQ-PDKGKVS 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL-------RSVVDLSALGSRQ-- 111
                   +      R A        S ++   + R L        + +D S+L   +  
Sbjct: 79  IYIDCSSTAEPAFEGRGA-----DWLSADLSNALQRCLLGAKSGAGAAIDRSSLVVVEGK 133

Query: 112 ----IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA---- 163
               + ID  V+ +DG           VAL +        +      +  +  V+     
Sbjct: 134 ICWDLYIDGLVVSSDGNLLDTLGAAIKVALSNTGIPKVQIAAGASSDEQPEVDVSDEDFM 193

Query: 164 ----------ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
                     ++   +  + IVD    E+S +    +  +   GHI  V      A    
Sbjct: 194 QFDTSGIPVIVTLTKVGKHYIVDATPEEESQMSFTVSISINRQGHICGVTKRG-GAGLDP 252

Query: 214 DHFFAMLNLAKDRIADLI 231
                M+++AK     LI
Sbjct: 253 SVILDMVSVAKHVSEQLI 270


>gi|195128659|ref|XP_002008779.1| GI11625 [Drosophila mojavensis]
 gi|193920388|gb|EDW19255.1| GI11625 [Drosophila mojavensis]
          Length = 417

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 73/207 (35%), Gaps = 33/207 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59
           R  GR+ N+ R++ LT      ++ G+  V  GDT +L   + +   P   R N    ++
Sbjct: 29  RFDGRKANEFRDVKLTFG----SDWGTVAVSMGDTKVLAQVSCDIGTPSSARANEGTLYL 84

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------ 111
             +   +          + +      R   +  ++ R  RS   +DL +L          
Sbjct: 85  NVDIKGVAFL-------DEIQSTHDQRFLTLNSLLERTFRSSRCLDLESLCIAVEQHVWC 137

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHD--------CLQHMEDCSNKFQLSQVLKGHVAA 163
           + +D +V+  DG    A+   A  AL            + +   S + +    L      
Sbjct: 138 VRVDINVLNHDGNLYDASTIAALAALMHFRRPEVSYAEEKIHTFSERERELMPLLFLHYP 197

Query: 164 ISCGML----CGYPIVDLDYGEDSTID 186
           +S           P+VD    E++  D
Sbjct: 198 VSVTYCLYKSSSNPLVDPTLLEENAAD 224


>gi|133918821|emb|CAL29615.1| polyribonucleotide nucleotidyltransferase [Rhizobium huautlense]
          Length = 180

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 64/175 (36%), Gaps = 8/175 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 7   RIDGRDLETVRAIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++  +      + +  +
Sbjct: 67  RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVVSE 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           + +++G +  A + G  +AL D    +        +  +L+G   A+   +L   
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLSDILGDE 177


>gi|126329382|ref|XP_001372178.1| PREDICTED: similar to Chain G, Structure Of The Human Rna Exosome
           Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42,
           Csl4, Rrp4, And Rrp40 [Monodelphis domestica]
          Length = 237

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 29/229 (12%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R  +  + +    +GS     GDT +L       +V   +        T E  + P   
Sbjct: 30  LRHFACEQNLLSRPDGSASFLQGDTSVLVGVYGPAEVK--VSKEIFNKATLEVILKP--- 84

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
                     G  G   +  +R+I     +VV  +      I +   ++   G      +
Sbjct: 85  --------KIGLPGVAEKSRERLIRTTCEAVVLGTLHPRTSITVVLQIVSDAGSLLACCL 136

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDA 189
             A +AL D    +                   ++C + L G  ++D    ++       
Sbjct: 137 NAACLALVDAGVPLRAL-------------FCGVTCALDLDGGLVLDPTAKQEKEARAIL 183

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
            F +  +   +    S  +  +S   F   L  A+     + +  +D +
Sbjct: 184 TFALDSTEQKLL--MSTTKGLYSVAEFQQCLAAAQHASLHIFRFYRDSL 230


>gi|329944611|ref|ZP_08292751.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328530164|gb|EGF57047.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 790

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 92/255 (36%), Gaps = 34/255 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R ++    V     GS + + G+T +L   T      +E++V      T
Sbjct: 344 VRMDGRGLKDIRTLAAEVEVLPRVHGSAIFERGETQIL-GVTTLNMLRMEQQVDDLSPVT 402

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              ++   Y   P STG   +  A   R+ G       +  RAL  V+         I  
Sbjct: 403 HKRYMH-NYNFPPFSTGETGRVGAPKRREIGHG----NLAERALVPVLPTREDFPYAIRQ 457

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG----MLC 170
             + + ++G T   ++  + ++L +                 L+  VA I+ G    ++ 
Sbjct: 458 VSEALGSNGSTSMGSVCASTLSLLNAGV-------------PLRAPVAGIAMGLMHEVID 504

Query: 171 GY----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           G      + D+   ED+  D+D     T    I  +Q   +      +     L  A+D 
Sbjct: 505 GETKWATLTDILGSEDAFGDMDFKVAGTRDF-ITALQLDTKLDGLPSEVLAGALGQARDA 563

Query: 227 IADLIKLQKDVISNE 241
              ++ +    I + 
Sbjct: 564 RLFILDVLAQAIDSP 578



 Score = 65.1 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 72/243 (29%), Gaps = 33/243 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKF-GDTHLL-TTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
           R +      ++K A GS +    G+T +L  T   +     +        +        R
Sbjct: 23  RVVRFETGRLAKQAAGSAMAYLDGETAVLSATTVGKHPKDQFDFFPLTVDVEERQYAAGR 82

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR G  +    R+I R LR           Q++     I  D      
Sbjct: 83  IPGSFFRRE---GRAGTAAILACRLIDRPLRPSFVKGLRNEVQVVETVLAIHPDDDYDVL 139

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           AI  A ++                      G VA     ++ G+ +    Y E       
Sbjct: 140 AINAASMSTQIAGL-------------PFSGPVAGTRLALIDGHWVAFPRYSEQQRATFQ 186

Query: 189 ANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQ 234
                    +    I+ V+  A    +          ++      L  AK  I  L + Q
Sbjct: 187 MVVAGRVLESGDVAIMMVEAGATEHAWELINAGSVAPTEAVVAEGLEAAKPHIKALCEAQ 246

Query: 235 KDV 237
            +V
Sbjct: 247 LEV 249


>gi|239917238|ref|YP_002956796.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Micrococcus luteus NCTC 2665]
 gi|281414287|ref|ZP_06246029.1| polynucleotide phosphorylase/polyadenylase [Micrococcus luteus NCTC
           2665]
 gi|259534137|sp|C5C9U0|PNP_MICLC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|239838445|gb|ACS30242.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Micrococcus luteus NCTC 2665]
          Length = 753

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 85/242 (35%), Gaps = 14/242 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R+++    V     GS + + G+T ++   TL     E+    +     
Sbjct: 347 VRIDGRGLTDIRKLTAEVEVLPRVHGSAIFERGETQIMGVTTLNMLKMEQQIDSLSPETA 406

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 407 KRYMHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPAREEFPYAIRQVS 462

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  + ++L +    +        +     G V+A   G      + D
Sbjct: 463 EALSSNGSTSMGSVCASTLSLLNAGVPLRAHVAGIAM-----GLVSAEVDGQTQYAALTD 517

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    +  +Q   +          + L  A++    ++ +   
Sbjct: 518 ILGAEDAFGDMDFKVAGTAEF-VTAIQLDTKLDGIPASVLASALTQAREARLHILSVLNA 576

Query: 237 VI 238
            I
Sbjct: 577 AI 578



 Score = 43.5 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 82/252 (32%), Gaps = 42/252 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTATL----EEKVPMWIRNTKHGWITAEYGM 65
           R +      +++ A G+ +V   + T +L+  T+     E    +             G 
Sbjct: 21  RTVRFETGRLAQQAAGAAMVYLDEETSMLSATTVGKSPREGFDFFPLTVDVEERMYASGR 80

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q+++    I  D   
Sbjct: 81  IP---GSFFRRE---GRPSTDAILTCRLIDRPLRPAFVKGIRNEVQVVVTVTSIAPDEIY 134

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA--------------AISCGMLCG 171
            T AI  A ++               +++ +  G  A              A+    + G
Sbjct: 135 DTVAINAASLSTQLSGLPFSGPIGGVRMALMDDGSGARQWVAFPKHSQLKGAVFNMAVAG 194

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDS----GHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
             + D           D   +M ++         V+    +A  +++     L  AK  I
Sbjct: 195 RVVGD-----------DVAIMMVEAEATPDSWTLVKERGAQAP-TEEIVAEGLEAAKPFI 242

Query: 228 ADLIKLQKDVIS 239
             L + Q D++ 
Sbjct: 243 RALCEAQADLVK 254


>gi|133918853|emb|CAL29631.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium kostiense]
 gi|133918855|emb|CAL29632.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium kostiense]
          Length = 180

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 61/175 (34%), Gaps = 8/175 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 7   RIDGRDLVTVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++  +      + +  +
Sbjct: 67  NFMLHYNFPPFSVGETGR----LGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSE 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           + +++G +  A + G  +AL D    +        +  + +    A+   +L   
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPIAKPVAGIAMGLIKEDDRFAVLSDILGDE 177


>gi|333024088|ref|ZP_08452152.1| putative polyribonucleotide nucleotidyltransferase [Streptomyces
           sp. Tu6071]
 gi|332743940|gb|EGJ74381.1| putative polyribonucleotide nucleotidyltransferase [Streptomyces
           sp. Tu6071]
          Length = 738

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 85/249 (34%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R ++          GS L + G+T +L   TL     E+    +      
Sbjct: 339 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRK 398

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  +   R+ G       +  RAL  V+         I    +
Sbjct: 399 RYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPTREEFPYAIRQVSE 454

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            + ++G T   ++  + ++L +                 LK  VA I+ G++        
Sbjct: 455 ALGSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLISETVKGET 501

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    +  +Q   +          A L  A+D    
Sbjct: 502 HYVTLTDILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLH 560

Query: 230 LIKLQKDVI 238
           ++ +  + I
Sbjct: 561 ILDVMMEAI 569



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 71/239 (29%), Gaps = 39/239 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      ++K A GS +    D T +L+  T     ++++  +             G 
Sbjct: 20  RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGK 79

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q++     +  D   
Sbjct: 80  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLY 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G +      ++ G  +    + E    
Sbjct: 134 DVVAINAASCSTQLAGL-------------PFSGPIGGTRVALIKGQWVAFPTHTELEDA 180

Query: 186 DVDANF-----------VMTDSGHIVE--VQGSAERATFSQDHFFAM-LNLAKDRIADL 230
             D              +M       E  +Q  A  AT   +   A  L+ AK  I  L
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVAGGATAPTEEVVAAGLDAAKPFIKVL 239


>gi|321475274|gb|EFX86237.1| hypothetical protein DAPPUDRAFT_193332 [Daphnia pulex]
          Length = 218

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 62/172 (36%), Gaps = 29/172 (16%)

Query: 9   NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
           N +R +   + V   A+GS +   G+T ++ +     +  +    +   +I   Y     
Sbjct: 6   NSIRALKCEQSVLSRADGSVMFSQGNTVVMASVYGPLEAKIQKELSDRMYIELNY----- 60

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT-RT 127
                  +  + G    R +E  ++I      ++  +      + I    +Q DGGT   
Sbjct: 61  -----KPKTGMPG-VAERGKE--KLIKTTCNHIILTNLHPRTAVCITVQEMQ-DGGTLLA 111

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLD 178
           A+I    +AL D                 L+  VAA++C +      I+D  
Sbjct: 112 ASINAVCLALLDSGL-------------PLQCLVAAVTCLVDKKDRIILDPC 150


>gi|332374620|gb|AEE62451.1| unknown [Dendroctonus ponderosae]
          Length = 174

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 49/149 (32%), Gaps = 14/149 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+    R + +       A+GS + K G T ++     E   P        G++ 
Sbjct: 22  IRPDGREFEDYRPVIVNVGSISTADGSAIAKVGKTTVICGVKAELCRPR-PECPNKGFLV 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALG------SRQI 112
               + P  +         SG  G  +Q + ++I   +     ++L  L       +  +
Sbjct: 81  PNLELSPLCSSK-----FKSGPPGEEAQVLTQLIADVIENSRCINLEELCLLKDKLAWCL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCL 141
             D   +  DG    A I      L    
Sbjct: 136 YADLVCLDYDGSLLDACIVALMACLRLLC 164


>gi|71415718|ref|XP_809916.1| exosome-associated protein 4 [Trypanosoma cruzi strain CL Brener]
 gi|70874370|gb|EAN88065.1| exosome-associated protein 4, putative [Trypanosoma cruzi]
          Length = 229

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 74/228 (32%), Gaps = 26/228 (11%)

Query: 5   GR-QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWITAE 62
           GR   + +R   +   V      S  V+ G+T ++      ++ V  +  +      T  
Sbjct: 6   GRETPDGVRYPHIALDVLGQCHSSACVELGNTRVICAVHHPQQLVDEYRGSRGRVACTVR 65

Query: 63  YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
                 S      + +V   +    +++   +      VV L  +    + +  +++  D
Sbjct: 66  RSASAGSHAAGSAQPSVVTPE----KDMSLALEGVAEEVVILEKIPQLLVEVVVEILAED 121

Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
           GG   A  T    AL      M D               A  S  +  G  ++D D  E+
Sbjct: 122 GGVWDAVATSMSAALVSGGFEMYDL------------FSACGSALLSDGAVVLDPDAAEE 169

Query: 183 STIDVDANFV-MTDSGHIVEV--QGSAERATFSQDHFFAMLNLAKDRI 227
           S     A    M +SG I     QGS E  T        +++ A    
Sbjct: 170 SNAQASALVCLMLNSGDICYARHQGSCEPGT-----VLELVSSAMKGC 212


>gi|326922105|ref|XP_003207292.1| PREDICTED: exosome complex exonuclease RRP42-like [Meleagris
           gallopavo]
          Length = 291

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 75/263 (28%), Gaps = 29/263 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R   +   V     GS  VK G T +L     E   P  +     G++ 
Sbjct: 22  LRVDGRGCEDYRCAEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPDEGYLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QI 112
                   +T     R            EI   + R       +DL +L          +
Sbjct: 81  FFVDCSANATPEFEGRGGE-----ELGTEIASTLYRIFSSEGSIDLKSLCINPREHCWVL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ--VLKGHVAAISCGMLC 170
            +D  +++  G    A       AL +            + S+   L           + 
Sbjct: 136 YVDVLLLECGGNLFDAISIAVKAALFNTRIPKVRVLEDEEGSKEIELSDDPYDCIRLNVD 195

Query: 171 GYP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
             P            +VD    E++         +T  G +  ++    + +   +  F 
Sbjct: 196 DVPCIVTLNKIGYRHVVDATLQEEACCLASLLIAITSKGALTCMKKIG-KGSLDPESIFE 254

Query: 219 MLNLAKDRIADLIKLQKDVISNE 241
           M+   K     L    + V+  E
Sbjct: 255 MMETGKKVGKSLHASLQKVLDEE 277


>gi|133918839|emb|CAL29624.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti]
 gi|133918841|emb|CAL29625.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti]
 gi|133918843|emb|CAL29626.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti]
 gi|133919172|emb|CAL29634.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium arboris]
 gi|133919174|emb|CAL29635.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium arboris
           LMG 14919]
 gi|133919176|emb|CAL29636.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium arboris]
          Length = 180

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 61/175 (34%), Gaps = 8/175 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 7   RIDGRDLVTVRPIVAEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++  +      + +  +
Sbjct: 67  NFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSE 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           + +++G +  A + G  +AL D    +        +  + +    A+   +L   
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVLSDILGDE 177


>gi|310789357|gb|EFQ24890.1| 3' exoribonuclease family protein [Glomerella graminicola M1.001]
          Length = 298

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 70/229 (30%), Gaps = 34/229 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           +RL GR+ +Q R+  LT       +  G   V+ G T +L   + E  VP +      G 
Sbjct: 23  LRLDGREFDQYRKAQLTFG-----DEFGVANVELGKTRVLAKVSAEVTVP-YTDRPFEGI 76

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALG------SR 110
                 + P ++           R       + R++ + +R    +D  +L         
Sbjct: 77  FQITSELSPMASPA-----FEVNRPTEAEVLLSRILEKTIRRSGALDTESLCLIAGQKVW 131

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQH------------MEDCSNKFQLSQVLK 158
            +  D  V+  DG    AA      AL    +                      LS +  
Sbjct: 132 SVRADVHVLSHDGNLTDAACLAVIAALRHFRKPDTSNEGQSLTIFTPAEREPVPLSWLHS 191

Query: 159 GHVAAISCGMLCGYP-IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
                 S     G   +VD ++ E+          +   G I ++    
Sbjct: 192 PFCVTFSFFGDEGEITLVDANWIEEQLRTSSMTVSLNKHGEISQISKLG 240


>gi|325115863|emb|CBZ51418.1| putative 3' exoribonuclease family, domain 1 containing protein
           [Neospora caninum Liverpool]
          Length = 384

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 75/254 (29%), Gaps = 56/254 (22%)

Query: 1   MRLSGRQ-ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           +R  GR+   ++R +S+    +K A+GS  V  G T ++       + P    ++     
Sbjct: 28  VRPDGREHAQELRPLSVQLGFAKTADGSARVSQGLTSVIALVVGPVEAPPGKFSSSGCVF 87

Query: 60  TA----------------EYGMLPRS------TGNRVKREAVSGRQGGRSQEIQRMIGRA 97
                                M   S       G + +    SG    R  E+Q  +   
Sbjct: 88  HVILKPLAVPPTLSAARAAAAMGSCSAVAGAGGGRKGRTGGDSGEAFERWIEVQ--LQTL 145

Query: 98  LRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHME-----------D 146
           L+ +V         I +   ++Q DGG  +A I  A  AL D    +             
Sbjct: 146 LQHMVAPGEYPRCLIQLTLMILQDDGGAESACINAALAALIDAGVALRFRAWAASLVRLS 205

Query: 147 CSNKFQLSQVLKGHVAAIS------------------CGMLCGYPIVDLD-YGEDSTIDV 187
              +       +  V   +                   G   G   VD     ED   + 
Sbjct: 206 RGARALERSEERPAVTGSALSPASQAGSRCEGQQSSGAGDEDGEWRVDPCSEEEDGRKEG 265

Query: 188 DANFVM-TDSGHIV 200
               V+   +G +V
Sbjct: 266 AICLVLEPQTGDLV 279


>gi|302542113|ref|ZP_07294455.1| polyribonucleotide nucleotidyltransferase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302459731|gb|EFL22824.1| polyribonucleotide nucleotidyltransferase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 743

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 90/251 (35%), Gaps = 34/251 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNTK 55
           R+ GR    +R ++          GS L + G+T +L   T      +E+++      T+
Sbjct: 339 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQIL-GVTTLNMLRMEQQLDTLSPETR 397

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 398 RRYMH-NYNFPPYSTGETGRVGSPKRREIGHG----ALAERALLPVLPTREEFPYAIRQV 452

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            + + ++G T   ++  + ++L +                 LK  VA I+ G++      
Sbjct: 453 SEALGSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLISQEIDG 499

Query: 174 ------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                 + D+   ED+  D+D     T    +  +Q   +          A L  A+D  
Sbjct: 500 ETHYVTLTDILGAEDAFGDMDFKVAGTKQF-VTALQLDTKLDGIPASVLAAALKQARDAR 558

Query: 228 ADLIKLQKDVI 238
             ++ +  + I
Sbjct: 559 LHILDVMMEAI 569



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 78/232 (33%), Gaps = 17/232 (7%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      +++ A GS +    D T +L+  T     ++++  +             G 
Sbjct: 20  RTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGR 79

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q++     +  D   
Sbjct: 80  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLY 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +               +++ ++KG   A          + D+        
Sbjct: 134 DVVAINAASCSTQLAGLPFSGPIGGTRVA-LIKGQWVAFPTHSELEEAVFDMVVAGRVLE 192

Query: 186 DVDANFVMTDSG---HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D D   +M ++      +++      A  +++   A L  AK  I  L K Q
Sbjct: 193 DGDVAIMMVEAEATTQTIQLVKDGAEAP-TEEIVAAGLEAAKPYIKVLCKAQ 243


>gi|119625656|gb|EAX05251.1| exosome component 9, isoform CRA_e [Homo sapiens]
          Length = 242

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 80/227 (35%), Gaps = 29/227 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              +   +           GRQ     ++ R++ R LR    +D  +L    G +  QI 
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  ++  DG    AA   A VAL    +           +     +  +   +      
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPIC 193

Query: 164 ISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
           +S        Y +VD +  E+  +D      M     I  +Q S   
Sbjct: 194 VSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGSE 240


>gi|67921975|ref|ZP_00515491.1| Polyribonucleotide nucleotidyltransferase [Crocosphaera watsonii WH
           8501]
 gi|67856191|gb|EAM51434.1| Polyribonucleotide nucleotidyltransferase [Crocosphaera watsonii WH
           8501]
          Length = 715

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 85/251 (33%), Gaps = 28/251 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSK-YAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-----T 54
           +R+ GR+ +++R I+    +      GS L   G T + + ATL                
Sbjct: 323 IRVDGRKLDEVRPIACRVGLMPPRVHGSALFTRGLTQVFSLATLGTPGDAQDLGDDLHPE 382

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
                   Y   P S G      +   R+ G       +  RA+  V+         + +
Sbjct: 383 DEKRYLHHYNFPPFSMGETKPLRSPGRREIGHG----ALAERAILPVLPPQEEFPYVVRV 438

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--- 171
             +V+ ++G T   ++ G+ +AL D                 +   V+  + G++     
Sbjct: 439 VSEVVSSNGSTSMGSVCGSTLALMDAGV-------------PIIKPVSGAAMGLIREGKE 485

Query: 172 -YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED   D+D     TDSG I  +Q   +    + D     +  A      +
Sbjct: 486 VRILTDIQGIEDFLGDMDFKVAGTDSG-ITALQMDMKITGLTMDIVAKAIQQALPARLHI 544

Query: 231 IKLQKDVISNE 241
           +      I+  
Sbjct: 545 LDKMLATIAQP 555



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 82/228 (35%), Gaps = 28/228 (12%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG----ML 66
           R+I L   +    A G+ L++  D    T   +               +T +Y       
Sbjct: 13  RDIRLKLGLLAPQAGGAVLIQSQD----TAVLVTATTTKGREGIDFLPLTVDYEERLYAA 68

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
            R  G  ++RE   GR   R+  I R+I R LR +         QII     +  +    
Sbjct: 69  GRIPGGFLRRE---GRPPERAILISRLIDRPLRPLFPNWWRKDIQIIATTLSMDEEVPPD 125

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             A+TG+ +A+                     G +AA+  G++    I++  Y E    D
Sbjct: 126 VLAVTGSSIAVIQAGI-------------PFYGPMAAVRVGLIGDDFIINPTYREVENGD 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           +D     +  G +V V+  A   T  +      ++   + + DLI  Q
Sbjct: 173 LDLVVAGSPDG-VVMVEAGA--NTLPEQDIIEAIDFGYEAVRDLIGAQ 217


>gi|318062386|ref|ZP_07981107.1| polynucleotide phosphorylase/polyadenylase [Streptomyces sp.
           SA3_actG]
 gi|318078519|ref|ZP_07985851.1| polynucleotide phosphorylase/polyadenylase [Streptomyces sp.
           SA3_actF]
          Length = 738

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 85/249 (34%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R ++          GS L + G+T +L   TL     E+    +      
Sbjct: 339 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRK 398

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  +   R+ G       +  RAL  V+         I    +
Sbjct: 399 RYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPTREEFPYAIRQVSE 454

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            + ++G T   ++  + ++L +                 LK  VA I+ G++        
Sbjct: 455 ALGSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLISETVKGET 501

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    +  +Q   +          A L  A+D    
Sbjct: 502 HYVTLTDILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLH 560

Query: 230 LIKLQKDVI 238
           ++ +  + I
Sbjct: 561 ILDVMMEAI 569



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 70/239 (29%), Gaps = 39/239 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      ++K A GS +    D T +L+  T     ++++  +             G 
Sbjct: 20  RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGK 79

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q++     +  D   
Sbjct: 80  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLY 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G +      ++ G  +    + E    
Sbjct: 134 DVVAINAASCSTQLAGL-------------PFSGPIGGTRVALIKGQWVAFPTHTELEDA 180

Query: 186 DVDANF-----------VMTDSGHIVE--VQGSAERATFSQDHFFAM-LNLAKDRIADL 230
             D              +M       E  +Q  A  AT   +   A  L  AK  I  L
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVAGGATAPTEEVVAAGLEAAKPFIKVL 239


>gi|296423319|ref|XP_002841202.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637437|emb|CAZ85393.1| unnamed protein product [Tuber melanosporum]
          Length = 293

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 71/228 (31%), Gaps = 33/228 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           +R+ GR  +  RE+ L        +  G   V+ G T +L   + E  V  +      G 
Sbjct: 23  LRIDGRDLDSFRELELNFG-----DDYGLADVQLGKTRVLARVSAEV-VKPFTDRPFDGI 76

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSR------ 110
            T    + P ++          GRQ  +   + R+I +A+R    +D  +L         
Sbjct: 77  FTITTELGPMASPA-----FEPGRQTEQEVLLSRLIEKAIRRSNALDTESLCIVAGQKCW 131

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN-----------KFQLSQVLKG 159
           QI  D   +  DG    A+      AL    +                        +L  
Sbjct: 132 QIRADVHFLSHDGALVDASCIAVVAALQHFRRPDVSVEGEKVTIHTMTERIPVPLSILHV 191

Query: 160 HVAAISCGMLCGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
            +       L G   + D    E+     D    +   G + ++  + 
Sbjct: 192 PICVTFSFYLDGEVCLVDATLQEEQLRQGDMTITLNKFGELCQIAKAG 239


>gi|302522241|ref|ZP_07274583.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. SPB78]
 gi|302431136|gb|EFL02952.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. SPB78]
          Length = 739

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 85/249 (34%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R ++          GS L + G+T +L   TL     E+    +      
Sbjct: 340 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRK 399

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  +   R+ G       +  RAL  V+         I    +
Sbjct: 400 RYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPTREEFPYAIRQVSE 455

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            + ++G T   ++  + ++L +                 LK  VA I+ G++        
Sbjct: 456 ALGSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLISETVKGET 502

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    +  +Q   +          A L  A+D    
Sbjct: 503 HYVTLTDILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLH 561

Query: 230 LIKLQKDVI 238
           ++ +  + I
Sbjct: 562 ILDVMMEAI 570



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 70/239 (29%), Gaps = 39/239 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      ++K A GS +    D T +L+  T     ++++  +             G 
Sbjct: 21  RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGK 80

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q++     +  D   
Sbjct: 81  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLY 134

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G +      ++ G  +    + E    
Sbjct: 135 DVVAINAASCSTQLAGL-------------PFSGPIGGTRVALIKGQWVAFPTHTELEDA 181

Query: 186 DVDANF-----------VMTDSGHIVE--VQGSAERATFSQDHFFAM-LNLAKDRIADL 230
             D              +M       E  +Q  A  AT   +   A  L  AK  I  L
Sbjct: 182 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVAGGATAPTEEVVAAGLEAAKPFIKVL 240


>gi|133918833|emb|CAL29621.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium terangae]
 gi|133918835|emb|CAL29622.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium terangae]
 gi|133918837|emb|CAL29623.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium terangae]
          Length = 180

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 61/175 (34%), Gaps = 8/175 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 7   RIDGRDLVTVRPIVAEVGILPRTHGSSLFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++  +      + +  +
Sbjct: 67  NFMLHYNFPPFSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSE 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           + +++G +  A + G  +AL D    +        +  + +    A+   +L   
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVLSDILGDE 177


>gi|88855410|ref|ZP_01130074.1| polyribonucleotide nucleotidyltransferase [marine actinobacterium
           PHSC20C1]
 gi|88815317|gb|EAR25175.1| polyribonucleotide nucleotidyltransferase [marine actinobacterium
           PHSC20C1]
          Length = 749

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 91/252 (36%), Gaps = 34/252 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR  + +R +     V     GS + + G+T +L   T      +E+++      T
Sbjct: 349 IRIDGRGLSDIRALDAEVEVIPRVHGSAIFQRGETQIL-GVTTLNMLKMEQQIDSLAPVT 407

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           K  ++   Y   P STG   +  +   R+ G       +  RA+  V+         I  
Sbjct: 408 KKRYMH-HYNFPPYSTGETGRVGSPKRREIGHGF----LAERAIAPVLPPREEFPYAIRQ 462

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP- 173
             + + ++G T   ++  + ++L +                 L+  VA I+ G++     
Sbjct: 463 VSEALGSNGSTSMGSVCASTLSLLNAGV-------------PLRAPVAGIAMGLISDEVD 509

Query: 174 -------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                  + D+   ED+  D+D     T    +  +Q   + A          L  AK+ 
Sbjct: 510 GVTRYAALTDILGAEDALGDMDFKVAGTSEF-VTAIQLDTKLAGLPSSVLDGALKQAKEA 568

Query: 227 IADLIKLQKDVI 238
              ++ +    I
Sbjct: 569 RTAILSVLNAAI 580



 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 56/184 (30%), Gaps = 23/184 (12%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  +RE   GR    +  + R+I R +R           QI+I    I  D      +I
Sbjct: 83  GSFFRRE---GRPSTEAILVCRLIDRPMRPTFVEGLRNEVQIVITVLSIAPDEFYDALSI 139

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA---------AISCGMLCGYPIVDLDYGE 181
             A ++               +L+ +    VA         A+    + G  + + +  E
Sbjct: 140 NAASLSTQISGLPFYGPIAGIRLALINDQWVAFPKHSQLADAVFDLTVAGRMVTNDNGEE 199

Query: 182 DST-----IDVDAN------FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           D        +   N         T     V  QG      F +    A L +A      +
Sbjct: 200 DIAIMMVEAEATENSWELIKAGATKPDEAVVAQGLEASKPFLKQLVKAQLEVANKAAKPV 259

Query: 231 IKLQ 234
            + Q
Sbjct: 260 AEFQ 263


>gi|303279202|ref|XP_003058894.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460054|gb|EEH57349.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 292

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 89/259 (34%), Gaps = 33/259 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+  R     RE++         +G C V  G T +L   + + + P   R +  G +T
Sbjct: 27  IRIDLRGPFDAREVAYRFGPK---DGVCEVSLGKTRVLAVTSAKLEPPGGGR-SNEGSVT 82

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQ--I 112
                 P ++ N        GR G  + E+  ++ RA+R    VD+ +L    G R   I
Sbjct: 83  INVEFSPMASPN-----FEPGRPGEEASELAVVLERAIRETGAVDVESLCVLAGRRVWNI 137

Query: 113 IIDCDVIQADGGTRTAAITG------------AWVALHDCLQHMEDCSNKFQLSQVLKGH 160
            +D  V+ A G    AA               A V     L  +     +  +   L   
Sbjct: 138 RVDVHVLDACGNIAGAASLAANASLLSFRRPEATVDPSTQLVTVHPADAREPIPLALHHL 197

Query: 161 VAAISCGM---LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
             A+  G      G  IVD    E++ +      V+   G +  VQ          +   
Sbjct: 198 PIAVKFGFFAEHEGLLIVDPLVDEEAVMASSLIVVLNAHGELCAVQKGG-GVGVPANEIM 256

Query: 218 AMLNLAKDRIADLIKLQKD 236
             + +A     +L    ++
Sbjct: 257 RCVRIADKMTKELTTQLRE 275


>gi|194740918|ref|XP_001952937.1| GF17467 [Drosophila ananassae]
 gi|190625996|gb|EDV41520.1| GF17467 [Drosophila ananassae]
          Length = 234

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 76/234 (32%), Gaps = 31/234 (13%)

Query: 9   NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
           +Q+R +          +GS +   G + +++      +V     +    ++   Y     
Sbjct: 12  DQLRRMHCEFNPLSRCDGSVMYSQGASVVISAVLGPVEVKSQNLSIDGSYLECNY----- 66

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
               R K      ++  R       I   L   V   A    ++ I    ++  G     
Sbjct: 67  ----RPKAGLPQVKERLRE----AAIKDILDLTVLSEAYPRSKMSIQVQELEDRGSMDAC 118

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDSTIDV 187
           A+  A +A+                   LK   AA+ C +   G  ++D D+ E +    
Sbjct: 119 AVNSACLAM-------------LIGGLPLKCSFAAVHCIIDEQGDYVLDPDHSETAHQRA 165

Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
              F      G+++ +Q    +  F  + F  +  L +    ++ K  +  I+ 
Sbjct: 166 SFTFAFDSMEGNLLLIQ---TKGAFKIEQFNDIECLCRSASQEIFKFYRSQIAK 216


>gi|6648187|gb|AAF21185.1|AC013483_9 putative 3' exoribonuclease [Arabidopsis thaliana]
          Length = 293

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 90/265 (33%), Gaps = 41/265 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+    R I +   V   A GS  V+ G T ++ +   E   P  ++    G + 
Sbjct: 19  LRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSLQ-PDKGKVA 77

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--------------RSVVDLSA 106
                 P +      R          S E+   + R L               + ++LS+
Sbjct: 78  VFIDCSPTAEPTFGGRGGE-----ELSSELALALQRCLLGGKSGAAIHVLVPGAGINLSS 132

Query: 107 LGSRQ------IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160
           L  ++      + ID  VI +DG    A       AL +      + S +    +  +  
Sbjct: 133 LLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQPEID 192

Query: 161 VAA--------------ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
           ++               ++   +  + IVD    E+S +    +  +  +GHI  +   +
Sbjct: 193 ISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGLTKRS 252

Query: 207 ERATFSQDHFFAMLNLAKDRIADLI 231
             +         M+++AK     L+
Sbjct: 253 -GSGLDPSVILDMISVAKHVTETLM 276


>gi|50954610|ref|YP_061898.1| polynucleotide phosphorylase/polyadenylase [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|81391079|sp|Q6AFQ2|PNP_LEIXX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|50951092|gb|AAT88793.1| polyribonucleotide nucleotidyltransferase [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 761

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 89/248 (35%), Gaps = 26/248 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R +    ++     GS + + G+T +L   T      +E+++      T
Sbjct: 356 VRIDGRGLTDIRPLDAEVQIIPRVHGSAVFQRGETQIL-GVTTLNMLKMEQQIDSLSPVT 414

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           K  ++   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 415 KKRYLH-HYNFPPYSTGETGRVGSPKRREIGHGF----LAERALVPVLPSREEFPYAIRQ 469

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-- 172
             + + ++G T   ++  + ++L +    +            + G    +   ++ G   
Sbjct: 470 VSEALSSNGSTSMGSVCASTLSLLNAGVPLRA---------PVAGIAMGLISDVIDGETR 520

Query: 173 --PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              + D+   ED+  D+D     T    +  +Q   +          + L  AKD    +
Sbjct: 521 YAALTDILGAEDALGDMDFKVAGTSEF-VTAIQLDTKLDGIPSSVLASALKQAKDARTTI 579

Query: 231 IKLQKDVI 238
           + +    I
Sbjct: 580 LSVLDAAI 587



 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 60/186 (32%), Gaps = 22/186 (11%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  +RE   GR    +  + R+I R LR           QI++    I  D      AI
Sbjct: 83  GSFFRRE---GRPSTEAILVCRLIDRPLRPSFVDGLRNEVQIVVTVLSIAPDEFYDALAI 139

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVL-----KGHVAAISCGMLCGYPIVDLD------Y 179
             A  +               +L+ +      +    A          + DL        
Sbjct: 140 NAASASTQISGLPFSGPIAGVRLALIPGNGAHEDQWVAFPKASQLEEAVFDLIVVGRVLT 199

Query: 180 GEDSTIDVDANFVMTD----SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
            ED T + D   +M +     G    +QG A +    ++     L  AK  I  L+  Q 
Sbjct: 200 NEDGT-EGDVAIMMVEAEATEGSWNLIQGGAVKPN--EEVVAQGLEAAKPFIRQLVGAQ- 255

Query: 236 DVISNE 241
             ++ +
Sbjct: 256 AALAKQ 261


>gi|328784959|ref|XP_624485.2| PREDICTED: exosome complex exonuclease RRP46 [Apis mellifera]
          Length = 229

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 71/224 (31%), Gaps = 30/224 (13%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R ++         +GS ++  G+T  +       +  +         I   Y  +P   
Sbjct: 21  LRPMNCELNQLSMPDGSAMLMQGNTAAVAGIYGPIEAKLQKMIYDKASIEVSY--IPV-- 76

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
                      +   R  E+   I     + + ++   +  I I+   ++  GG     I
Sbjct: 77  -------KGPAKIDDRMTEM--YIKETCEAAIIVTFHPATAICINIQEMEDSGGMLACTI 127

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY--PIVDLDYGEDSTIDVD 188
             A +AL +    M             K  +AA++C +  G    I+D D  +      +
Sbjct: 128 NAACLALINAGIPM-------------KFTIAAVNCMIQEGTNNIILDPDSTQLQDAKAE 174

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
             +        +    +A    F+++ F   ++  K     +  
Sbjct: 175 FTYAFDSVKKDIICCYTA--GCFTEEEFLETIDKCKQASQYVFD 216


>gi|320163129|gb|EFW40028.1| polymyositis/scleroderma autoantigen 1 [Capsaspora owczarzaki ATCC
           30864]
          Length = 313

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 86/271 (31%), Gaps = 41/271 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           +R+ GR     R I +    +   E G   V+ G T ++   + E   P +      G +
Sbjct: 22  LRVDGRGVYDFRRIRI----AYQPERGHVEVQLGRTRVMVQVSCELTKP-FPDRPAEGAV 76

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------ 111
                + P ++          GR   ++ E+ RM+ R ++  + +D ++L          
Sbjct: 77  QFNVELSPMASPA-----FEPGRPSEQAIELSRMVERVVKDSNAIDTTSLCVISGEAVWN 131

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQH-------------------MEDCSNKFQ 152
           I +D   +  DG    A    A   L    +                    + D   +  
Sbjct: 132 IRVDLHALDHDGNLSDALCMAALAGLIHFRKPEVSMPSLSSGDESVAGNLIIHDVREREP 191

Query: 153 LSQVLKGHVAAISCGMLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERAT 210
           L   +      ++   L    + +VD  + E+   +      M     +  V        
Sbjct: 192 LPLSVHHMPLCVTFAFLDDGEHMVVDPTFQEERVAEGYLIVAMNIHREVCAVHKHG-SVL 250

Query: 211 FSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
                      +A  ++A++ +L +  I  E
Sbjct: 251 LDASQISRCTKIAAIKVAEMTELLQKSIDEE 281


>gi|133918845|emb|CAL29627.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium
           americanum]
          Length = 180

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 61/175 (34%), Gaps = 8/175 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I     +     GS +   G+T  +  ATL         ++  G    
Sbjct: 7   RIDGRDLVTVRPIVAEVGLLPRTHGSAIFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++  +      + +  +
Sbjct: 67  NFMLHYNFPPFSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSE 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           + +++G +  A + G  +AL D    +        +  + +    A+   +L   
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVLSDILGDE 177


>gi|67474914|ref|XP_653189.1| exosome complex exonuclease [Entamoeba histolytica HM-1:IMSS]
 gi|56470120|gb|EAL47803.1| exosome complex exonuclease, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 265

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 75/254 (29%), Gaps = 37/254 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMWIRNTKHGW 58
           +R+  R+ ++ RE+S          GS     G++  L        E V         G 
Sbjct: 12  IRIDARRLDEFREVS----FVCREPGSVETHIGNSKALGECVV---EPVCPGRSRPDQGI 64

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL---RS------VVDLSALGS 109
                  L  +  N                EI +++ R L   R+      V+    L  
Sbjct: 65  FNIRVNFLEMANPNFYDSRGPRDL-----IEIGKVVERGLLSTRAIDVDGLVIIRGKL-V 118

Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQ----------HMEDCSNKFQLSQVLKG 159
            +I +   +I   G         A  AL   ++           +     +  +   +  
Sbjct: 119 WKITVCVHIINDCGNLMDLVSITAISALLTAVRREVQICGTDVKILTPEERKPVPLAIHH 178

Query: 160 HVAAISCGMLC-GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
               +S G+   G P++D    E+S         +   G +  VQ S      S      
Sbjct: 179 IPITVSFGITESGVPLLDPSEREESVCKSHLTIAINKEGEVCAVQKSG--TPISMKVIQK 236

Query: 219 MLNLAKDRIADLIK 232
             + A  +   LIK
Sbjct: 237 CCDTALSKAKMLIK 250


>gi|256832257|ref|YP_003160984.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Jonesia denitrificans DSM 20603]
 gi|256685788|gb|ACV08681.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Jonesia denitrificans DSM 20603]
          Length = 735

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 92/254 (36%), Gaps = 32/254 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
           +R+ GR    +R +S    V     GS L + G+T ++   TL     E+++      T+
Sbjct: 339 VRIDGRGLADIRTLSAEVEVVPRVHGSALFERGETQIMGITTLNMLKMEQQIDSLGPETR 398

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 399 KRYMH-NYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPSREDFPYAIRQV 453

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            + + ++G T   ++  + ++L +                 L+  VA I+ G++      
Sbjct: 454 SEALGSNGSTSMGSVCASTLSLLNAGV-------------PLRAPVAGIAMGLISDTVDG 500

Query: 174 ------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                 + D+   ED+  D+D     T    +  +Q   +            L  A+D  
Sbjct: 501 ETRYAALTDILGAEDAYGDMDFKVAGTRDF-VTAIQLDTKLDGIPASVLAGALTQARDAR 559

Query: 228 ADLIKLQKDVISNE 241
             ++ + ++ I   
Sbjct: 560 YTILDVIEEAIDQP 573



 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 74/242 (30%), Gaps = 33/242 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKF-GDTHLL-TTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
           R +      +++ A GS      GDT LL TTA  +     +        +        R
Sbjct: 21  RTVRFETGRLARQAAGSACAYLDGDTMLLSTTAVGKHPKDQFDFFPLTVDVEERMYAAGR 80

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR    +    R+I R LR           Q++I    I  D      
Sbjct: 81  IPGSFFRRE---GRPSTEAILACRLIDRPLRPSFVKGLRNEVQVVITVLSIHPDEAYDVL 137

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           AI  A ++                      G V  +   ++    +    + +      D
Sbjct: 138 AINAASMSTQLSGL-------------PYSGPVGGVRVALIDDQWVAFPKHSDKERAVFD 184

Query: 189 ANF---VMTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDRIADLIKLQ 234
                 ++ D   I+ V+  A   ++           ++      L  AK  I  L + Q
Sbjct: 185 MVVSGRIVGDDVAIMMVEAEATENSWNLVKNQGATAPTEGVVAEGLEAAKPFIRALCEAQ 244

Query: 235 KD 236
            +
Sbjct: 245 IE 246


>gi|237837415|ref|XP_002368005.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
 gi|211965669|gb|EEB00865.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
 gi|221509233|gb|EEE34802.1| exosome complex exonuclease, putative [Toxoplasma gondii VEG]
          Length = 352

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/321 (16%), Positives = 91/321 (28%), Gaps = 103/321 (32%)

Query: 1   MRLSGRQENQMREISLTR---------------------------------------RVS 21
           +R  GR+ +++RE+  +                                         V 
Sbjct: 21  LRADGRRPHELRELRFSTCVPSLLPSPSARPASASDPRKADSSVESEENNLAPFASGGVG 80

Query: 22  KYAEGSCLVKFGDTHLLTTATLEEKVPMW--------IRNTKHGW--------------- 58
            +A+G  LV FG T +         +P          +  +  GW               
Sbjct: 81  THADGRSLVSFGSTKVAAFVFGPRPLPAGAGNASRALVSASGGGWSERGVLEEGFDASGA 140

Query: 59  --------------------ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL 98
                               +    G+ P S   R       G       E+   + + +
Sbjct: 141 DSVLGQGGAAGSGGAAERASLLCRVGIAPFSGDWRADVTRSGG--AAEEHEVALGVRKVV 198

Query: 99  RSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK 158
            SV+         I +   V++ DGG   A+I+ A +AL D                  K
Sbjct: 199 ESVILADTCPRSLICLFVHVVENDGGILAASISAASLALVDAGIA-------------TK 245

Query: 159 GHVAAISCGMLCGY--PIVDLDYGEDSTIDVDANFVMT-DSGHIVEVQGSAERATFSQDH 215
             VAA+SC  +     P++D    E  T        M   SG +  +Q   + +T   D 
Sbjct: 246 DFVAAMSCVYMPRQLTPLLDPPRAELQTGAPSLTLAMLVSSGEVSLLQLDGQVST---DV 302

Query: 216 FFAMLNLAKDRIADLIKLQKD 236
           F  M         ++ +  K 
Sbjct: 303 FEQMYEACAAGCREVGEAMKA 323


>gi|296224998|ref|XP_002807638.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex exonuclease
           RRP42-like [Callithrix jacchus]
          Length = 459

 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 80/263 (30%), Gaps = 29/263 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R + +   V     GS  VK G T +L     E  +P  +     G++ 
Sbjct: 22  LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGMPK-LEKPNEGYLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QI 112
                   +T     R            EI   + R    +S VDL  L          +
Sbjct: 81  FFVDCSANATPEFEGRGG-----DDLGTEIANTLYRIFNNKSSVDLKTLCISAREHCWVL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ--VLKGHVAAISCGMLC 170
            +D  +++ DG    A       AL +            + S+   L           + 
Sbjct: 136 YVDVLLLECDGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVE 195

Query: 171 GYP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
             P            +VD    E++         +T  G +  ++    + +   +  F 
Sbjct: 196 NVPCIVTLCKIGYQHVVDATLQEEACSLASLLVSVTSKGVVTCLRKVG-KGSLDPESIFE 254

Query: 219 MLNLAKDRIADLIKLQKDVISNE 241
           M+  +K     L    + ++  E
Sbjct: 255 MMETSKRVGKVLHASLQSILHKE 277


>gi|312076508|ref|XP_003140893.1| hypothetical protein LOAG_05308 [Loa loa]
 gi|307763947|gb|EFO23181.1| hypothetical protein LOAG_05308 [Loa loa]
          Length = 264

 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 85/251 (33%), Gaps = 36/251 (14%)

Query: 7   QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWITAEYGM 65
             N  R I +        +G+  V+FG T ++ +    +++      N   G +     +
Sbjct: 30  ASNSFRSIVMQTGALHDQKGTVYVEFGSTKIICSVDGPKEITKSADVNPTEGQVYV--FL 87

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQR-MIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              ST       + S     +     R  +  ALRS+V L      QI ++  V+  DGG
Sbjct: 88  KNISTEGNAVSGSNSSSVSNKEINGTRNAVESALRSIVCLELFCKAQIDVEITVLNDDGG 147

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG---- 180
              A++  + +AL D    + D              VAA    +  G  IVD        
Sbjct: 148 VLAASLIASSLALVDSGIQVYDV------------CVAAHIVMLTDGRIIVDPSTNSYPF 195

Query: 181 ------EDSTIDVDANF---VMTDSGHI--VEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
                 E+ + +   +    +M     +   E  G AE            + +A +    
Sbjct: 196 SSIPDSEEFSGNTHLSVTVGMMPSLNQLACCEFVGIAEPH-----QLRHAITVAVESSLK 250

Query: 230 LIKLQKDVISN 240
           L  L +  +++
Sbjct: 251 LYPLVRKTLTS 261


>gi|133919178|emb|CAL29637.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium medicae]
 gi|133919180|emb|CAL29638.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium medicae]
 gi|133919182|emb|CAL29639.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium medicae]
          Length = 180

 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 61/175 (34%), Gaps = 8/175 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 7   RIDGRDLVTVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++  +      + +  +
Sbjct: 67  NFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSE 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           + +++G +  A + G  +AL D    +        +  + +    A+   +L   
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFAVLSDILGDE 177


>gi|25144570|ref|NP_741217.1| EXOSome (multiexonuclease complex) component family member (exos-9)
           [Caenorhabditis elegans]
 gi|14625162|gb|AAC48298.2| Exosome (multiexonuclease complex) component protein 9, isoform a,
           confirmed by transcript evidence [Caenorhabditis
           elegans]
          Length = 434

 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 86/261 (32%), Gaps = 32/261 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R   R   + R++ L       AE G+ +   G+T ++   + E   P  +R    G I 
Sbjct: 23  RFDFRSLEEFRDVKLVVG----AEVGTAICTIGNTKVMAAVSAEIAEPSSMR-PHKGVIN 77

Query: 61  AEYGMLPRS-TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR------QII 113
            +  + P +   N   R    G +  R  E+  +I  +    +D+ AL  R      +I 
Sbjct: 78  IDVDLSPMANYANEHDRLGSKGMELIRLLEL--IIRDS--RCIDVEALCIRAGKEIWKIR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS----------NKFQLSQVLKGHVAA 163
           +D  ++  DG     A   A  AL    +                 K  +   +      
Sbjct: 134 VDVRILDEDGSLLDCACLAAITALQHFRRPNVTLEPHHTLIYSEYEKAPVPLNIYHMPIC 193

Query: 164 ISCGMLCGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVEV-QGSAERATFSQDHFFAML 220
            + G+L      ++D    E + +D            +  + Q +      S       +
Sbjct: 194 TTIGLLDKGQIVVIDPTDKETACLDGSIVVACNKRREVCALHQST--NLILSTKQIERCV 251

Query: 221 NLAKDRIADLIKLQKDVISNE 241
            LA  R   L  +  DVI  +
Sbjct: 252 KLAMARAEALTAVVSDVIKQD 272


>gi|297156777|gb|ADI06489.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           bingchenggensis BCW-1]
          Length = 750

 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 91/251 (36%), Gaps = 34/251 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNTK 55
           R+ GR    +R ++          GS L + G+T +L   T      +E+++      T+
Sbjct: 339 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQIL-GVTTLNMLRMEQQLDTLAPETR 397

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 398 KRYMH-NYNFPPYSTGETGRVGSPKRREIGHG----ALAERALLPVLPSREDFPYAIRQV 452

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            + + ++G T   ++  + ++L +                 L+  VA I+ G++      
Sbjct: 453 SEALSSNGSTSMGSVCASTMSLLNAGV-------------PLRAPVAGIAMGLISQEIDG 499

Query: 174 ------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                 + D+   ED+  D+D     T +  +  +Q   +          A L  A+D  
Sbjct: 500 ETHYVTLTDILGAEDAFGDMDFKVAGTKTF-VTALQLDTKLDGIPASVLAAALKQARDAR 558

Query: 228 ADLIKLQKDVI 238
             ++ +  + I
Sbjct: 559 LHILDVMNEAI 569



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 75/244 (30%), Gaps = 41/244 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      +++ A GS +    D T +L+  T     ++++  +             G 
Sbjct: 20  RTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGR 79

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           QI+     +  D   
Sbjct: 80  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLY 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G +      ++ G  +    + E    
Sbjct: 134 DVVAINAASCSTQLAGL-------------PFSGPIGGTRVALIRGQWVAFPTHSELEDA 180

Query: 186 ------------DVDANFVMTDS---GHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
                       D D   +M ++      +++      A  +++   A L  AK  I  L
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATDKTIQLVKDGAEAP-TEEVVAAGLEAAKPFIKVL 239

Query: 231 IKLQ 234
            K Q
Sbjct: 240 CKAQ 243


>gi|133919184|emb|CAL29640.1| polyribonucleotide nucleotidyltransferase [Agrobacterium vitis]
          Length = 180

 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 63/175 (36%), Gaps = 8/175 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR    +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 7   RIDGRDLETVRAIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++         + +  +
Sbjct: 67  RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIRPMLPSPEQFPYTLRVVSE 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           + +++G +  A + G  +AL D    +        +  +L+G   A+   +L   
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDE 177


>gi|150864479|ref|XP_001383313.2| exosome exoribonuclease [Scheffersomyces stipitis CBS 6054]
 gi|149385735|gb|ABN65284.2| exosome exoribonuclease [Scheffersomyces stipitis CBS 6054]
          Length = 289

 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 84/275 (30%), Gaps = 60/275 (21%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ G     +R   L   + + A GS  ++ G+  +  +       P+          + 
Sbjct: 34  RIDG-----LRPFFLKTGIIENANGSSYLEVGNNIIEVSVYGPR--PIRGSFIDRASFSV 86

Query: 62  EYGMLPR-------------------STGNRVKREAVSGRQGGRSQE--IQRMIGRALRS 100
           E   LP                    +         V+GR G  S E  I   I  +L  
Sbjct: 87  ECKFLPFISQPNEHLYNNTSISASSAANTTNQTNVNVNGRTGLTSIEHKISSYIETSLLP 146

Query: 101 VVDLSALGSRQIIIDCDVIQAD---GG----TRTAA-----ITGAWVALHDCLQHMEDCS 148
            + L       I +   +I  D   GG    T+  +     +  + VAL D         
Sbjct: 147 SIVLEKYPKSTIDVFVTIISTDSSLGGSYSDTKMLSLVNWVLNASSVALVDSGI------ 200

Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST---IDVDANFVMTDSGHIVEVQGS 205
                   +K  V +    +     ++D    ++     +   A+F+   +  IV +   
Sbjct: 201 -------EVKDVVTSGVAHLQNDVLVLDPTEIQEKDEGSVSCVASFMNLRNDEIVGIWIE 253

Query: 206 AERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            ++          +L+       D+ K  +  I++
Sbjct: 254 GDQTNLENSQVDHLLD----GCNDMSKKVRANINS 284


>gi|133919170|emb|CAL29633.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium kostiense]
          Length = 180

 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 8/167 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 7   RIDGRDLVTVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++  +      + +  +
Sbjct: 67  NFMLHYNFPPFSVGETGR----LGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSE 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI 164
           + +++G +  A + G  +AL D    +        +  + +    A+
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPIAKPVAGIAMGLIKEDDRFAV 169


>gi|326771722|ref|ZP_08231007.1| polyribonucleotide nucleotidyltransferase [Actinomyces viscosus
           C505]
 gi|326637855|gb|EGE38756.1| polyribonucleotide nucleotidyltransferase [Actinomyces viscosus
           C505]
          Length = 785

 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 91/252 (36%), Gaps = 34/252 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R ++    V     GS + + G+T +L   T      +E++V      T
Sbjct: 344 VRMDGRGLKDIRTLAAEVEVLPRVHGSAIFERGETQIL-GVTTLNMLRMEQQVDDLSPVT 402

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              ++   Y   P STG   +  A   R+ G       +  RAL  V+         I  
Sbjct: 403 HKRYMH-NYNFPPFSTGETGRVGAPKRREIGHG----NLAERALVPVLPTREDFPYAIRQ 457

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG----MLC 170
             + + ++G T   ++  + ++L +                 L+  VA I+ G    ++ 
Sbjct: 458 VSEALGSNGSTSMGSVCASTLSLLNAGV-------------PLRAPVAGIAMGLMHEVID 504

Query: 171 GY----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           G      + D+   ED+  D+D     T    I  +Q   +      +     L  A+D 
Sbjct: 505 GETKWATLTDILGSEDAFGDMDFKVAGTRDF-ITALQLDTKLDGLPSEVLAGALGQARDA 563

Query: 227 IADLIKLQKDVI 238
              ++ +    I
Sbjct: 564 RLFILDVLAQAI 575



 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 72/243 (29%), Gaps = 33/243 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKF-GDTHLL-TTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
           R +      ++K A GS +    G+T +L  T   +     +        +        R
Sbjct: 23  RVVRFETGRLAKQAAGSAMAYLDGETAVLSATTVGKHPKDQFDFFPLTVDVEERQYAAGR 82

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR G  +    R+I R LR           Q++     I  D      
Sbjct: 83  IPGSFFRRE---GRAGTAAILACRLIDRPLRPSFVKGLRNEVQVVETVLAIHPDDDYDVL 139

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           AI  A ++                      G VA     ++ G+ +    Y E       
Sbjct: 140 AINAASMSTQIAGL-------------PFSGPVAGTRLALIDGHWVAFPRYSEQQRATFQ 186

Query: 189 ANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQ 234
                    +    I+ V+  A    +          ++      L  AK  I  L + Q
Sbjct: 187 MVVAGRVLESGDVAIMMVEAGATEHAWELINAGAVAPTEAVVAEGLEAAKPHIKALCEAQ 246

Query: 235 KDV 237
            +V
Sbjct: 247 LEV 249


>gi|294631766|ref|ZP_06710326.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. e14]
 gi|292835099|gb|EFF93448.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. e14]
          Length = 740

 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 85/249 (34%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R ++          GS L + G+T +L   TL     E+    +      
Sbjct: 340 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRK 399

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  +   R+ G       +  RAL  V+         I    +
Sbjct: 400 RYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPTREEFPYAIRQVSE 455

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            + ++G T   ++  + ++L +                 LK  VA I+ G++        
Sbjct: 456 ALGSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLISQEIEGET 502

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    +  +Q   +          A L  A+D    
Sbjct: 503 HYVTLTDILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLH 561

Query: 230 LIKLQKDVI 238
           ++ +  + I
Sbjct: 562 ILDVMMEAI 570



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 73/243 (30%), Gaps = 39/243 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      ++K A GS +    D T +L+  T     ++++  +             G 
Sbjct: 21  RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGK 80

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q++     +  D   
Sbjct: 81  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVCTVMALNPDHLY 134

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G +  +   ++ G  +    + E    
Sbjct: 135 DVVAINAASASTQLAGL-------------PFSGPIGGVRVALINGQWVAFPTHTELEDA 181

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
             D              I+ V+  A   T           +++   A L  AK  I  L 
Sbjct: 182 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKGGAEAPTEEVVAAGLEAAKPFIKVLC 241

Query: 232 KLQ 234
           K Q
Sbjct: 242 KAQ 244


>gi|289705304|ref|ZP_06501702.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Micrococcus luteus SK58]
 gi|289557967|gb|EFD51260.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Micrococcus luteus SK58]
          Length = 753

 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 89/244 (36%), Gaps = 18/244 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R+++    V     GS + + G+T ++   T      +E+++      T
Sbjct: 347 VRIDGRGLTDIRKLTAEVEVLPRVHGSAIFERGETQIM-GVTTLNMLKMEQQIDSLAPET 405

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              ++   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 406 AKRYMH-HYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPAREEFPYAIRQ 460

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             + + ++G T   ++  + ++L +    +        +     G V+A   G      +
Sbjct: 461 VSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAM-----GLVSAEVDGQTQYAAL 515

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D+   ED+  D+D     T    +  +Q   +          A L  A++    ++ + 
Sbjct: 516 TDILGAEDAFGDMDFKVAGTAEF-VTAIQLDTKLDGIPASVLAAALTQAREARLHILSVL 574

Query: 235 KDVI 238
              I
Sbjct: 575 NAAI 578



 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 83/252 (32%), Gaps = 42/252 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTATL----EEKVPMWIRNTKHGWITAEYGM 65
           R +      +++ A G+ +V   + T +L+  T+     E    +             G 
Sbjct: 21  RTVRFETGRLAQQAAGAAMVYIDEETSMLSATTVGKSPREGFDFFPLTVDVEERMYAAGR 80

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q+++    I  D   
Sbjct: 81  IP---GSFFRRE---GRPSTDAILTCRLIDRPLRPAFVKGIRNEVQVVVTVTSIAPDEIY 134

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQV-----LKGHVA---------AISCGMLCG 171
            T AI  A ++               +++ +      +  VA         A+    + G
Sbjct: 135 DTVAINAASLSTQLSGLPFSGPIGGVRMALMDDGSGTRQWVAFPKHSQLEGAVFNMAVAG 194

Query: 172 YPIVDLDYGEDSTIDVDANFVMTDS----GHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
             + D           D   +M ++         V+    +A  +++     L  AK  I
Sbjct: 195 RVVGD-----------DVAIMMVEAEATPDSWTLVKERGAQAP-TEEIVAEGLEAAKPFI 242

Query: 228 ADLIKLQKDVIS 239
             L + Q D++ 
Sbjct: 243 RALCEAQADLVK 254


>gi|327276287|ref|XP_003222901.1| PREDICTED: exosome complex exonuclease RRP46-like isoform 2 [Anolis
           carolinensis]
          Length = 262

 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 73/251 (29%), Gaps = 46/251 (18%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG------ 64
           +R I   + +    +GS     GDT +L       +V +         +           
Sbjct: 16  LRRIVCEQGLLSRPDGSASWMQGDTSVLAGVYGPSEVKVSKEIYDKATLEVMLRPKVGLP 75

Query: 65  ----MLPRSTGNRV------------KREAVSGRQG------GRSQEIQRMIGRALRSVV 102
                LPRS G                 E +  +Q        RS+E  +MI +   +VV
Sbjct: 76  GLQPSLPRSAGVSPNYNSDNSIFVPEDLEVLKIKQSSEQGVYERSRE--QMIKKTCEAVV 133

Query: 103 DLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA 162
             +      I I   VI   G    + +  A + L D    M                  
Sbjct: 134 LGTLHPRSSITIVLQVITDAGSLLASCLNAACMGLMDAGLPMGSL-------------FC 180

Query: 163 AISCGM-LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
            ++C +   G   +D    ++        F +      V    S+ + T S +     + 
Sbjct: 181 GVTCALDADGNFTLDPTAKQEKEAQTVLTFAIDSIEKKVL--MSSMKGTCSVEQLQQCVA 238

Query: 222 LAKDRIADLIK 232
            ++     + +
Sbjct: 239 ASQRAADTIFQ 249


>gi|193645775|ref|XP_001952675.1| PREDICTED: exosome complex exonuclease RRP42-like [Acyrthosiphon
           pisum]
          Length = 289

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 73/244 (29%), Gaps = 35/244 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
            R  GR     R + L   +   A GS  ++  ++ +L    +E   P+           
Sbjct: 22  FRCDGRSRQDYRPLELEMDIVSNANGSARLRLANSDILVCVKVEIDTPLPEAPKDGKIEY 81

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRSVVDLSALGSR------ 110
            +       P          A  GR G   + E+ R +  A   V +LS L         
Sbjct: 82  FVDCSANATP----------AFEGRGGEHLAAELSRFLCLAHGPVFNLSKLCIVPGQSCW 131

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM------------EDCSNKFQLSQVL- 157
           ++ +D  +++  G    A    A  AL +                    S+    ++ L 
Sbjct: 132 KLFVDVLILECGGNLFDAVSLAAKAALCNTSLPNIVGTYEDGQNIDLQISDDPFDTKPLE 191

Query: 158 -KGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
                  +S   +    + D    E+          +T  G++  V       +F  D  
Sbjct: 192 ASDLPVLVSLCKIGNSYVADPTIEEEICGAGCIVVSVTPKGNVTAVLKKG-AGSFMPDTL 250

Query: 217 FAML 220
             ++
Sbjct: 251 NEII 254


>gi|325067095|ref|ZP_08125768.1| polynucleotide phosphorylase/polyadenylase [Actinomyces oris K20]
          Length = 770

 Score = 79.4 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 91/252 (36%), Gaps = 34/252 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R ++    V     GS + + G+T +L   T      +E++V      T
Sbjct: 344 VRMDGRGLKDIRTLAAEVEVLPRVHGSAIFERGETQIL-GVTTLNMLRMEQQVDDLSPVT 402

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              ++   Y   P STG   +  A   R+ G       +  RAL  V+         I  
Sbjct: 403 HKRYMH-NYNFPPFSTGETGRVGAPKRREIGHG----NLAERALVPVLPTREDFPYAIRQ 457

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG----MLC 170
             + + ++G T   ++  + ++L +                 L+  VA I+ G    ++ 
Sbjct: 458 VSEALGSNGSTSMGSVCASTLSLLNAGV-------------PLRAPVAGIAMGLMHEVID 504

Query: 171 GY----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           G      + D+   ED+  D+D     T    I  +Q   +      +     L  A+D 
Sbjct: 505 GETKWATLTDILGSEDAFGDMDFKVAGTRDF-ITALQLDTKLDGLPSEVLAGALGQARDA 563

Query: 227 IADLIKLQKDVI 238
              ++ +    I
Sbjct: 564 RLFILDVLAQAI 575



 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 72/243 (29%), Gaps = 33/243 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKF-GDTHLL-TTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
           R +      ++K A GS +    G+T +L  T   +     +        +        R
Sbjct: 23  RVVRFETGRLAKQAAGSAMAYLDGETAVLSATTVGKHPKDQFDFFPLTVDVEERQYAAGR 82

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR G  +    R+I R LR           Q++     I  D      
Sbjct: 83  IPGSFFRRE---GRAGTAAILACRLIDRPLRPSFVKGLRNEVQVVETVLAIHPDDDYDVL 139

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           AI  A ++                      G VA     ++ G+ +    Y E       
Sbjct: 140 AINAASMSTQIAGL-------------PFSGPVAGTRLALIDGHWVAFPRYSEQQRATFQ 186

Query: 189 ANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQ 234
                    +    I+ V+  A    +          ++      L  AK  I  L + Q
Sbjct: 187 MVVAGRVLESGDVAIMMVEAGATEHAWELINAGAVAPTEAVVAEGLEAAKPHIKALCEAQ 246

Query: 235 KDV 237
            +V
Sbjct: 247 LEV 249


>gi|269956017|ref|YP_003325806.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304698|gb|ACZ30248.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Xylanimonas cellulosilytica DSM
           15894]
          Length = 744

 Score = 79.4 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 89/252 (35%), Gaps = 34/252 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R +     V     GS + + G+T ++   T      +E+++      T
Sbjct: 338 IRIDGRGPRDIRTLGAEVEVLPRVHGSAIFERGETQIM-GVTTLNMLRMEQQIDSLGPVT 396

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +  ++   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 397 RKRYMH-NYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPSREEFPYAIRQ 451

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP- 173
             + + ++G T   ++  + +++ +                 LK  VA I+ G++     
Sbjct: 452 VSEALGSNGSTSMGSVCASTLSMLNAGV-------------PLKAPVAGIAMGLISDEVD 498

Query: 174 -------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                  + D+   ED+  D+D     T    +  +Q   +            L  A + 
Sbjct: 499 GETRYVALTDILGAEDALGDMDFKVAGTRDF-VTAIQLDTKLDGIPASVLAGALTQAHEA 557

Query: 227 IADLIKLQKDVI 238
              ++ +  + I
Sbjct: 558 RVTILDVLNEAI 569



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 59/196 (30%), Gaps = 19/196 (9%)

Query: 12  REISLTRR-VSKYAEGSCLVKF-GDTHLL-TTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
           R +      +++ A GS      G+T LL  T   +     +        +        R
Sbjct: 21  RTVRFETGRLARQAAGSVAAYLDGETMLLSATTAGKHPKDQFDFFPLTVDVEERMYAAGR 80

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR    +    R+I R LR +         Q+++    I  D      
Sbjct: 81  IPGSFFRRE---GRPSTEAILACRLIDRPLRPLFVKGLRNEVQVVVTVLAIHPDDAYDVL 137

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           AI  A ++                      G VA +   ++ G  +    Y +      +
Sbjct: 138 AINAASLSTQ-------------ISGLPFSGPVAGVRIALIDGQWVAFPKYSDKERAVFE 184

Query: 189 ANFVMTDSGHIVEVQG 204
                  +G  V +  
Sbjct: 185 MVVAGRVAGDDVAIAM 200


>gi|257068221|ref|YP_003154476.1| polynucleotide phosphorylase/polyadenylase [Brachybacterium faecium
           DSM 4810]
 gi|256559039|gb|ACU84886.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Brachybacterium faecium DSM 4810]
          Length = 753

 Score = 79.4 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 83/232 (35%), Gaps = 18/232 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R +S    V     GS L + G+T ++   +      +E+++       
Sbjct: 349 VRIDGRGLRDIRALSAEVEVLPRVHGSALFQRGETQIM-GVSTLNMLKMEQQIDSLGPVE 407

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
           +  +I   Y   P STG   +  +   R+ G       +  RA+  V+         I  
Sbjct: 408 RKRYIH-HYNFPPYSTGETGRVGSPKRREVGHGM----LAERAIVPVLPSREEFPYAIRQ 462

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
             + + ++G T   ++  + ++L +    +        +     G ++    G +    +
Sbjct: 463 VSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAM-----GLISDTIEGEIRYAAL 517

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            D+   ED+  D+D     T    I  +Q   +            L+ A + 
Sbjct: 518 TDILGAEDAFGDMDFKVAGTGEF-ITAIQLDTKLDGLPASVLTGALSQAHEA 568



 Score = 36.6 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 56/181 (30%), Gaps = 27/181 (14%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  +RE   GR G  +    R+  R LR           Q+++       D       I
Sbjct: 85  GSFFRRE---GRPGTDAILAARLTDRPLRPAFVKGLRNEVQVVLTVMANGPDDAYDVVGI 141

Query: 131 TGAWV--------------ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
            GA                A+   L        ++           A+   ++ G  +  
Sbjct: 142 NGASASTQISGLPFSGPIGAVRIALMPNSQGGGQWVAFPTFSQLDEAVFSMVVAGRIV-- 199

Query: 177 LDYGEDSTIDVDANFVMTDSG-HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
               ED    +      TD+  ++++ QG+      ++      +  AK  I  L   Q+
Sbjct: 200 ----EDDVAIMMVEAEATDNSWNLIKEQGAIAP---TESVVAEGIEAAKVFIRSLCVAQQ 252

Query: 236 D 236
           +
Sbjct: 253 E 253


>gi|256066133|ref|XP_002570477.1| exonuclease [Schistosoma mansoni]
 gi|227299135|emb|CAY17987.1| exosome complex exonuclease rrp42 (ribosomal rna processing protein
           42), putative [Schistosoma mansoni]
          Length = 254

 Score = 79.4 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 82/217 (37%), Gaps = 31/217 (14%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
            GR  ++ R + +   +  +A GS  ++ G+T ++    +E   P  + NT  G I    
Sbjct: 2   DGRGPSEYRPLEIETNILSHATGSASIRIGETFIVCCVKMEVGKPS-LTNTSEGRIEINV 60

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV-----VDLSALGSR------QI 112
              P +T  R   +A S        E++  +   L+S      +DLS L  +       I
Sbjct: 61  ECYPTATH-RCNEKAAS--------ELEERLKTTLQSAYQLKFIDLSPLCIQRGRQCWVI 111

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ-LSQVLKGHVAA-------- 163
            ID  +++  G    A+      AL +  Q      + FQ  S+ L+  V          
Sbjct: 112 YIDLLILEGAGNLLDASSLVVKAALLNATQLNSLLLSVFQNNSESLEAGVQQFHGDMLPL 171

Query: 164 -ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHI 199
            I+   +    ++D    E++      + V+   G I
Sbjct: 172 FITVHKIGKAYLIDASKEEEACSLSRLSLVIYPDGSI 208


>gi|156383487|ref|XP_001632865.1| predicted protein [Nematostella vectensis]
 gi|156219927|gb|EDO40802.1| predicted protein [Nematostella vectensis]
          Length = 268

 Score = 79.4 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 90/258 (34%), Gaps = 30/258 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR     R++ +   V +   G C V+ G T +L   + E   P   R T  G I  
Sbjct: 1   RLDGRGIYDYRKLRIAFSVER---GHCEVQLGKTRVLAQVSCEITKPKTNRQTD-GHIYI 56

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR-ALRS-VVDLSAL----GSR--QII 113
              + P ++         +GR      E+ R + R  + S  +D  +L    G +   + 
Sbjct: 57  NVELSPMASPA-----FEAGRMSELGVELNRFVERFYIESRAIDTESLCIVAGEKVWSVR 111

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  V+   G     A   A  AL    +           +   +++  +   +      
Sbjct: 112 VDIQVLDHSGNILDCACISAITALSHFRRPDVSVSGEEVTIHSEADRDPVPLSILHMPIC 171

Query: 164 ISCGMLCGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           ++          +VD +  E++ +D      +     +          +   D      N
Sbjct: 172 VTFAFFDNGELLLVDPNDKEEAVMDGHMMMALNIHREVCGAVMGG-GVSLETDQIIRCSN 230

Query: 222 LAKDRIADLIKLQKDVIS 239
           +A  ++A++ +L +  ++
Sbjct: 231 IAVVKVAEITELIEKALA 248


>gi|295836212|ref|ZP_06823145.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. SPB74]
 gi|295825905|gb|EDY46178.2| polyribonucleotide nucleotidyltransferase [Streptomyces sp. SPB74]
          Length = 739

 Score = 79.4 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 85/249 (34%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R ++          GS L + G+T +L   TL     E+    +      
Sbjct: 340 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRK 399

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  +   R+ G       +  RAL  V+         I    +
Sbjct: 400 RYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPTREEFPYAIRQVSE 455

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
            + ++G T   ++  + ++L +                 LK  VA I+ G++        
Sbjct: 456 ALGSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLISETHGGET 502

Query: 173 ---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    +  +Q   +          A L  A+D    
Sbjct: 503 HYVTLTDILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLH 561

Query: 230 LIKLQKDVI 238
           ++ +  + I
Sbjct: 562 ILDVMMEAI 570



 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 71/239 (29%), Gaps = 39/239 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      ++K A GS +    D T +L+  T     ++++  +             G 
Sbjct: 21  RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGK 80

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q++     +  D   
Sbjct: 81  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVETIMALNPDHLY 134

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G +      ++ G  +    + E    
Sbjct: 135 DVVAINAASCSTQLAGL-------------PFSGPIGGTRVALIKGQWVAFPTHTELEDA 181

Query: 186 DVDANF-----------VMTDSGHIVE--VQGSAERATFSQDHFFAM-LNLAKDRIADL 230
             D              +M       E  +Q  A  AT   +   A  L+ AK  I  L
Sbjct: 182 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVAGGATAPTEEVVAAGLDAAKPFIKVL 240


>gi|133918823|emb|CAL29616.1| polyribonucleotide nucleotidyltransferase [Rhizobium gallicum]
          Length = 180

 Score = 79.4 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 8/175 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I     +     GS L   G+T  +  ATL         ++  G    
Sbjct: 7   RIDGRDLATVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++         + +  +
Sbjct: 67  NFMLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAIHPMLPSVEQFPYTLRVVSE 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           + +++G +  A + G  +AL D    +        +  + +    A+   +L   
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDE 177


>gi|303284571|ref|XP_003061576.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456906|gb|EEH54206.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 318

 Score = 79.4 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 82/278 (29%), Gaps = 49/278 (17%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFG----DTHLLTTATLEEKVPMWIRNTKH 56
           MR  GR     RE++L   V   A GS   + G     T ++ T   +   P    +   
Sbjct: 19  MRNDGRTREDYRELTLDLGVIPQATGSARARLGLDAWSTDVIVTVKADIGAPS-AEHPGD 77

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS---------------- 100
           G +     +   S      R   +     R+ E+ R + R+L                  
Sbjct: 78  GRLRCAVELSSASDTAYGGRGGEA-----RATELSRALERSLLGATAGSSASLSAHGEGC 132

Query: 101 VVDLSALGSRQ------IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS 154
            +D+SALG ++      + +D  V+  DG    A       AL D               
Sbjct: 133 ALDMSALGIQRGKSCWILQVDGLVLADDGNVLDALSMATRAALFDAKIPKVTAVAGPNPD 192

Query: 155 QV----LKGHVAAISCGMLCGYPI------------VDLDYGEDSTIDVDANFVMTDSGH 198
                 L       S   + G P+            VD    E+S  D      +  +G 
Sbjct: 193 DPAELELDDDPEECSRLDVSGVPVIVTLTRVGKHSIVDATKDEESMRDPRLCVGVDATGK 252

Query: 199 IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +  V           +   AM   A +    LI    +
Sbjct: 253 VRSVGKRG-GGGIDLNAMCAMTRTACECGKQLIAALDE 289


>gi|195430734|ref|XP_002063403.1| GK21414 [Drosophila willistoni]
 gi|194159488|gb|EDW74389.1| GK21414 [Drosophila willistoni]
          Length = 296

 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 73/247 (29%), Gaps = 32/247 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR     R + L   +   A GS  ++  +T +L     E  VP  +   + G +  
Sbjct: 23  RCDGRSRKDYRPMELETGLVSNASGSARLRLANTDILVGVKTEIDVPDPL-TPEFGKLEF 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS-----ALGSRQ---II 113
                  +T     R          +QE+   +  A  S +         +  +Q   + 
Sbjct: 82  FVDCSANATPEFEGRGG-----SDLAQELILALQNAYESPLSFDYRTLCLIPGQQCWKLY 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHME-------DCSNKFQLSQV-------LKG 159
           ID  +++  G    A    A  AL++               ++              +  
Sbjct: 137 IDILILECGGNLHDAVSLAAKAALYNTKLPRVTASLLDAGITDLIISDNPYDCTRLEIGT 196

Query: 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM---TDSGHIVEVQGSAERATFSQDHF 216
               ++   +  Y +VD    E+    V     +       ++     +    +  +D  
Sbjct: 197 VPILVTVCKIGDYCLVDPSAEEEVCSTVSMVVAISMKNKEAYLSGSHMTG-GGSMHRDTM 255

Query: 217 FAMLNLA 223
              LNL 
Sbjct: 256 LNSLNLG 262


>gi|195428613|ref|XP_002062366.1| GK17502 [Drosophila willistoni]
 gi|194158451|gb|EDW73352.1| GK17502 [Drosophila willistoni]
          Length = 326

 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 12/146 (8%)

Query: 7   QENQ----MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWITA 61
           + ++     R   L   V     GS  +++G+T ++       +V     R    G +  
Sbjct: 37  KPDEVVAKPRTTFLRAGVLTTVRGSAYMEYGNTKVMAIVAPPHEVVRASARRMNMGSLNC 96

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
                  +TG     E V      R +++  M+ +AL  VV  +   + Q+ +   +I+ 
Sbjct: 97  YVNYAAFATGEL---ETVPR----REKQLSSMLTKALEPVVCRNEFLNFQLDVRVLIIED 149

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDC 147
           DG   + AI    VAL +C     D 
Sbjct: 150 DGCLLSTAINCCGVALVECGISTYDL 175


>gi|332242411|ref|XP_003270380.1| PREDICTED: exosome complex exonuclease RRP46-like [Nomascus
           leucogenys]
          Length = 235

 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 57/185 (30%), Gaps = 29/185 (15%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R  +  + +    +GS     GDT +L       +V                 +  ++T
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK------------VSKEIFNKAT 75

Query: 71  GNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
              + R  +       +S+E  R+I     +VV  +      I +   V+   G      
Sbjct: 76  LEVILRPKIRLPGVAEKSRE--RLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACC 133

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVD 188
           +  A +AL D    M                   ++C +   G  ++D    ++      
Sbjct: 134 LNAACMALVDAGVPMRAL-------------FCGVTCALDSDGTLVLDPTSKQEKEARAV 180

Query: 189 ANFVM 193
             F +
Sbjct: 181 LTFAL 185


>gi|239928583|ref|ZP_04685536.1| polynucleotide phosphorylase/polyadenylase [Streptomyces ghanaensis
           ATCC 14672]
 gi|291436909|ref|ZP_06576299.1| polynucleotide phosphorylase/polyadenylase [Streptomyces ghanaensis
           ATCC 14672]
 gi|291339804|gb|EFE66760.1| polynucleotide phosphorylase/polyadenylase [Streptomyces ghanaensis
           ATCC 14672]
          Length = 739

 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 85/249 (34%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R ++          GS L + G+T +L   TL     E+    +      
Sbjct: 339 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRK 398

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  +   R+ G       +  RAL  V+         I    +
Sbjct: 399 RYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPSREEFPYAIRQVSE 454

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            + ++G T   ++  + ++L +                 LK  VA I+ G++        
Sbjct: 455 ALGSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLISQEIEGET 501

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    +  +Q   +          A L  A+D    
Sbjct: 502 HYVTLTDILGAEDAFGDMDFKVAGTKDF-VTALQLDTKLDGIPASVLAAALKQARDARLH 560

Query: 230 LIKLQKDVI 238
           ++ +  + I
Sbjct: 561 ILDVMMEAI 569



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 71/239 (29%), Gaps = 39/239 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      +++ A GS +    D T +L+  T     ++++  +             G 
Sbjct: 20  RTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGR 79

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q++     +  D   
Sbjct: 80  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLY 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G +  +   ++ G  +    + E    
Sbjct: 134 DVVAINAASASTQLAGL-------------PFSGPIGGVRVALIRGQWVAFPTHTELEDA 180

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADL 230
             D              I+ V+  A   T           +++   A L  AK  I  L
Sbjct: 181 VFDMVVAGRTLEDGDVAIMMVEAEATEKTVKLVEGGAEAPTEEVVAAGLEAAKPFIKVL 239


>gi|89888168|gb|ABD78634.1| polyribonucleotide nucleotidyltransferase [Bordetella holmesii]
 gi|89888171|gb|ABD78636.1| polyribonucleotide nucleotidyltransferase [Bordetella holmesii]
 gi|89888174|gb|ABD78638.1| polyribonucleotide nucleotidyltransferase [Bordetella holmesii]
          Length = 359

 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 80/232 (34%), Gaps = 36/232 (15%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           + L    +++ A G+ LV   DT +L T       +     +     +   T   G +P 
Sbjct: 16  VVLETGEIARQASGAVLVSVEDTVVLATVVAAKKAKPGQTFFPLTVDYIEKTYAAGRIP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G   KRE   G+   +     R+I R LR +         Q++I    +  +      
Sbjct: 75  --GGFFKRE---GKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSVNPEIDPDIP 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G + G  +++    +  T  +D
Sbjct: 130 AMIGASAALAISGI-------------PFNGPIGAARVGYVDGQYVLNPTASQLKTSKMD 176

Query: 189 ANFVMTDSGHIV---EVQGSAE-----RATFSQDHFFAMLNLAKDRIADLIK 232
                T++  ++   E Q  +E        F  +   A +N     I DL++
Sbjct: 177 LVVAGTENAVLMVESEAQQLSEEIMLGGVVFGHEQMQAAVN----AIHDLVR 224



 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
           R+ GR    +R IS+   V   A GS L   G+T  L  A
Sbjct: 320 RIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVA 359


>gi|6466958|gb|AAF13093.1|AC009176_20 hypothetical protein [Arabidopsis thaliana]
          Length = 297

 Score = 79.0 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 90/269 (33%), Gaps = 45/269 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+    R I +   V   A GS  V+ G T ++ +   E   P  ++    G + 
Sbjct: 19  LRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSLQ-PDKGKVA 77

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL------------------RSVV 102
                 P +      R          S E+   + R L                   + +
Sbjct: 78  VFIDCSPTAEPTFGGRGGE-----ELSSELALALQRCLLGGKSGAGLQSSIHVLVPGAGI 132

Query: 103 DLSALGSRQ------IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV 156
           +LS+L  ++      + ID  VI +DG    A       AL +      + S +    + 
Sbjct: 133 NLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQ 192

Query: 157 LKGHVAA--------------ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEV 202
            +  ++               ++   +  + IVD    E+S +    +  +  +GHI  +
Sbjct: 193 PEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGL 252

Query: 203 QGSAERATFSQDHFFAMLNLAKDRIADLI 231
              +  +         M+++AK     L+
Sbjct: 253 TKRS-GSGLDPSVILDMISVAKHVTETLM 280


>gi|133918847|emb|CAL29628.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium saheli]
 gi|133918849|emb|CAL29629.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium saheli]
 gi|133918851|emb|CAL29630.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium saheli]
          Length = 180

 Score = 79.0 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 62/175 (35%), Gaps = 8/175 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R I     +     GS +   G+T  +  ATL         ++  G    
Sbjct: 7   RIDGRDLVTVRPIVAEVGLLPRTHGSAIFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+  ++  +      + +  +
Sbjct: 67  NFMLHYNFPPFSVGETGR----LGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSE 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           + +++G +  A + G  +AL D    +        +  + +G   A+   +L   
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPIAKPVAGIAMGLIKEGDRFAVLSDILGDE 177


>gi|227497565|ref|ZP_03927791.1| polynucleotide phosphorylase/polyadenylase [Actinomyces
           urogenitalis DSM 15434]
 gi|226832965|gb|EEH65348.1| polynucleotide phosphorylase/polyadenylase [Actinomyces
           urogenitalis DSM 15434]
          Length = 789

 Score = 79.0 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 87/251 (34%), Gaps = 32/251 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK----- 55
           +R+ GR    +R +     V     GS + + G+T ++   T    + M  +        
Sbjct: 344 IRMDGRGLKDIRTLGAEVEVLPRVHGSAIFERGETQIM-GVTTLNMLRMEQQIDDLSPIT 402

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           H     +Y   P STG   +  A   R+ G       +  RAL  V+         I   
Sbjct: 403 HKRYMHQYIFPPFSTGETGRVGAPKRREIGHG----ALAERALVPVIPSRDEFPYAIRQV 458

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
            + + ++G T   ++  + ++L +                 L+  VA I+ G++      
Sbjct: 459 SEALGSNGSTSMGSVCASTLSLLNAGV-------------PLRAPVAGIAMGLMHEEIDG 505

Query: 174 ------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                 + D+   ED+  D+D     T    I  +Q   +      D     L  A+D  
Sbjct: 506 ETKWATLTDILGSEDAFGDMDFKVAGTREF-ITALQLDTKLDGLPSDVLAGALGQARDAR 564

Query: 228 ADLIKLQKDVI 238
             ++ + +  I
Sbjct: 565 FFILDVMEQAI 575



 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 71/243 (29%), Gaps = 33/243 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKF-GDTHLL-TTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
           R +      ++K A GS +    G+T +L  T   +     +        +        R
Sbjct: 23  RVVRFETGRLAKQAAGSAMAYLDGETAVLSATTVGKHPKDQFDFFPLTVDVEERQYAAGR 82

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR G  +    R+I R LR           Q++     I  D      
Sbjct: 83  IPGSFFRRE---GRAGTSAILACRLIDRPLRPSFVKGLRNEVQVVETVLAIHPDDAYDVL 139

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           AI  A ++                      G VA     ++ G  +    Y E      +
Sbjct: 140 AINAASMSTQIAGL-------------PFAGPVAGTRLALIDGQWVAFPRYSELERATFN 186

Query: 189 ANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQ 234
                         I+ V+  A    +          ++    + L  AK  I  L + Q
Sbjct: 187 MVVAGRVLEDGDVAIMMVEAGATENAWDLIRAGATAPTEPVVASALEAAKPHIKALCEAQ 246

Query: 235 KDV 237
             V
Sbjct: 247 MKV 249


>gi|213408869|ref|XP_002175205.1| exosome complex exonuclease RRP43 [Schizosaccharomyces japonicus
           yFS275]
 gi|212003252|gb|EEB08912.1| exosome complex exonuclease RRP43 [Schizosaccharomyces japonicus
           yFS275]
          Length = 274

 Score = 79.0 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 84/251 (33%), Gaps = 26/251 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  ++ R   +  +    A+GSC+V+ G++  +     E   P  +     GWI 
Sbjct: 31  VRPDGRTVSEFRPRVVNTQCISTADGSCIVRAGESVFVCGIKAEIAEP-ELEAPSRGWIV 89

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------I 112
               M P   G         G     +Q +   + + L    +V L +L  R+      +
Sbjct: 90  PNVEMGPLCNGK-----FKPGPPRELAQVVSEQMNQVLEQTCLVPLESLCIREKKAAWCL 144

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHD----CLQHMEDCS-------NKFQLSQVLKGHV 161
             D   +  DG     A      AL       +   ED          + +    L  H+
Sbjct: 145 YADIVCLNYDGNAFDCAWKALMHALETTRLPAVVWDEDEERVVCVHDERAKHPLALSSHI 204

Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
            + S  +     + D    E+S        ++ ++G I ++          +      L 
Sbjct: 205 ESFSWTVFGNCVLADPTDDEESLCVERLTIMLDNAGRICKLVKMG-GTHIQKGLLKGCLQ 263

Query: 222 LAKDRIADLIK 232
           +AK+ +  L  
Sbjct: 264 IAKEHVLSLTA 274


>gi|302554539|ref|ZP_07306881.1| polyribonucleotide nucleotidyltransferase [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472157|gb|EFL35250.1| polyribonucleotide nucleotidyltransferase [Streptomyces
           viridochromogenes DSM 40736]
          Length = 738

 Score = 78.6 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 85/249 (34%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R ++          GS + + G+T +L   TL     E+    +      
Sbjct: 339 RIDGRGVTDIRTLAAEVEAIPRVHGSAVFERGETQILGVTTLNMLRMEQQLDTLSPVTRK 398

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  +   R+ G       +  RAL  V+         I    +
Sbjct: 399 RYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPTREEFPYAIRQVSE 454

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            + ++G T   ++  + ++L +                 LK  VA I+ G++        
Sbjct: 455 ALSSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLISQEIEGET 501

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    +  +Q   +          A L  A+D    
Sbjct: 502 HYVTLTDILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLH 560

Query: 230 LIKLQKDVI 238
           ++ +  + I
Sbjct: 561 ILDVMMEAI 569



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 78/250 (31%), Gaps = 40/250 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      ++K A GS +    D T +L+  T     ++++  +             G 
Sbjct: 20  RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGK 79

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q++     +  D   
Sbjct: 80  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLY 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G +  +   ++ G  +    + E    
Sbjct: 134 DVVAINAASASTQLAGL-------------PFSGPIGGVRVALINGQWVAFPTHSELEDA 180

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
             D              I+ V+  A   T           +++   A L  AK  I  L 
Sbjct: 181 VFDMVVAGRTLEDGDVAIMMVEAEATEKTIQLVKGGAEAPTEEVVAAGLEAAKPFIKVLC 240

Query: 232 KLQKDVISNE 241
           K Q D ++++
Sbjct: 241 KAQAD-LASK 249


>gi|297202779|ref|ZP_06920176.1| polyribonucleotide nucleotidyltransferase [Streptomyces sviceus
           ATCC 29083]
 gi|197716767|gb|EDY60801.1| polyribonucleotide nucleotidyltransferase [Streptomyces sviceus
           ATCC 29083]
          Length = 740

 Score = 78.6 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 85/249 (34%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R ++          GS + + G+T +L   TL     E+    +      
Sbjct: 339 RIDGRGVTDIRTLAAEVEAIPRVHGSAVFERGETQILGVTTLNMLRMEQQLDTLSPVTRK 398

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P STG   +  +   R+ G       +  RAL  V+         I    +
Sbjct: 399 RYMHNYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPTREEFPYAIRQVSE 454

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            + ++G T   ++  + ++L +                 LK  VA I+ G++        
Sbjct: 455 ALSSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLISQEIDGET 501

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    +  +Q   +          A L  A+D    
Sbjct: 502 HYVTLTDILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLH 560

Query: 230 LIKLQKDVI 238
           ++ +  + I
Sbjct: 561 ILDVMMEAI 569



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 78/250 (31%), Gaps = 40/250 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      ++K A GS +    D T +L+  T     ++++  +             G 
Sbjct: 20  RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGK 79

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q++     +  D   
Sbjct: 80  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLY 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G +  +   ++ G  +    + E    
Sbjct: 134 DVVAINAASASTQLAGL-------------PFSGPIGGVRVALINGQWVAFPTHSELEDA 180

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
             D              I+ V+  A   T           +++   A L  AK  I  L 
Sbjct: 181 VFDMVVAGRALEDGDVAIMMVEAEATEKTIQLVKGGAEAPTEEVVAAGLEAAKPFIKVLC 240

Query: 232 KLQKDVISNE 241
           + Q D ++++
Sbjct: 241 RAQAD-LASK 249


>gi|194757229|ref|XP_001960867.1| GF11284 [Drosophila ananassae]
 gi|190622165|gb|EDV37689.1| GF11284 [Drosophila ananassae]
          Length = 296

 Score = 78.6 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 81/266 (30%), Gaps = 32/266 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R  GR     R + L   V   A GS  ++  +T +L     E  VP  +   ++G + 
Sbjct: 22  FRCDGRSRRDYRPMELETGVVSNASGSARLRLANTDILVGVKTEIDVPSPLA-PEYGKLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL---GSRQ---I 112
                   +T +   R          +QE+   +  A  S    D  +L     +Q   +
Sbjct: 81  FFVDCSANATPDFEGRGG-----SDLAQELILSLQNAYESPQAFDYRSLCLIPGQQCWKL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHME-------DCSNKFQLSQV-------LK 158
            ID  V++  G    A    A  AL +               ++              ++
Sbjct: 136 YIDILVLECGGNLHDAVSLAAKAALFNTKLPRVTATLLDAGITDLIISDNPYDCTRIGIE 195

Query: 159 GHVAAISCGMLCGYPIVDLDYGEDST---IDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
                ++   +  Y +VD    E+       V +  +     ++     +    +  +D 
Sbjct: 196 TAPLLVTVCKIGDYCLVDPTAEEEGCSTVSIVVSVSMRNGEPYLSGTHMTG-GGSMHRDT 254

Query: 216 FFAMLNLAKDRIADLIKLQKDVISNE 241
               L L       L  L   ++  E
Sbjct: 255 MQNCLQLGLSIGEQLNTLLTKMLKQE 280


>gi|171685834|ref|XP_001907858.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942878|emb|CAP68531.1| unnamed protein product [Podospora anserina S mat+]
          Length = 297

 Score = 78.6 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 69/225 (30%), Gaps = 34/225 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           +RL GR+  Q R + LT       +  G   V  G T +L  A+ E  VP +      G 
Sbjct: 23  VRLDGRELEQYRPLELTFG-----DQYGVADVTLGKTRVLAKASAELTVP-YADRPLDGI 76

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSR------ 110
                 + P ++           R       I R++ + +R    +D  +L         
Sbjct: 77  FNIATELSPMTSPA-----FEVNRPTETEVLISRLLEKTVRRSGALDTESLCLVAGQKCW 131

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQH-MEDCSNKFQLSQVLKGHVAAIS---- 165
            I +D  V+  DG    AA      AL    +           +    +     +S    
Sbjct: 132 SIRVDVHVLSHDGNLIDAACFAVVAALRHFRKPDTSMEGGVLTVYTPAEREPVPLSWLHS 191

Query: 166 --------CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEV 202
                    G      ++D  + E+          +   G I ++
Sbjct: 192 PFCVTWSFFGEEGDVAVLDATWMEEQVRSGSCTISLNKHGEICQI 236


>gi|297671539|ref|XP_002813914.1| PREDICTED: exosome complex exonuclease RRP42-like [Pongo abelii]
          Length = 576

 Score = 78.6 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 77/263 (29%), Gaps = 29/263 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R + +   V     GS  VK G T +L     E   P  +     G++ 
Sbjct: 22  LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QI 112
                   +T     R            EI   + R    +S VDL  L          +
Sbjct: 81  FFVDCSASATPEFEGRGG-----DDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWIL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ--VLKGHVAAISCGMLC 170
            +D  +++  G    A       AL +            + S+   L           + 
Sbjct: 136 YVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVE 195

Query: 171 GYP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
             P            +VD    E++         +T  G +  ++    + +   +  F 
Sbjct: 196 NIPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVG-KGSLDPESIFE 254

Query: 219 MLNLAKDRIADLIKLQKDVISNE 241
           M+   K     L    + V+  E
Sbjct: 255 MMETGKRVGKVLHASLQSVLHKE 277


>gi|330795359|ref|XP_003285741.1| hypothetical protein DICPUDRAFT_29826 [Dictyostelium purpureum]
 gi|325084289|gb|EGC37720.1| hypothetical protein DICPUDRAFT_29826 [Dictyostelium purpureum]
          Length = 290

 Score = 78.6 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 80/275 (29%), Gaps = 42/275 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT--LEEKVPMWIRNT---- 54
           +R  GR     R  SL      +A GS  VK  DT +L      +    P  + NT    
Sbjct: 20  IRSDGRNRVDYRNFSLETGEIIHANGSARVKLSDTEVLVGVKAEITHIQPKELTNTLQTF 79

Query: 55  -KHGWITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEIQRMIGRALRSVVDLSALGSR-- 110
                +       P ++          G+     + E+ + + R  + + + S       
Sbjct: 80  DTSKRLVFSVNCCPSASPEF------EGKGSEFLNIELGKQLERLYKFIFNKSNYHGNDN 133

Query: 111 -----------QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF-------- 151
                       + ID  V+ +DG    A       AL++                    
Sbjct: 134 CLSIVSGKYYWTLYIDAIVLDSDGNLFDALSIATRAALYNTRLPRVKAIQGEYEEITFEV 193

Query: 152 ------QLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
                  LS  ++     ++   +    ++D    E+  +D      +    +I  +Q  
Sbjct: 194 SDDPEDTLSLSIENAPICVTLTKIGTQFVIDSTLQEELCMDARLTVGINSHSNICSIQKG 253

Query: 206 AERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
             +          M+N +K     ++ +    +  
Sbjct: 254 GIQG-LDPATINQMINTSKVIGTKILNIMDKTLKE 287


>gi|149038199|gb|EDL92559.1| rCG51656 [Rattus norvegicus]
          Length = 252

 Score = 78.2 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 18/131 (13%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK---------- 55
           R   ++R +     +   A+GS  ++ G T +L   +   +     R             
Sbjct: 31  RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPA 90

Query: 56  --HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQII 113
              G +  ++   P S     +R A  G    R  E+   +  AL   V L      Q+ 
Sbjct: 91  ALRGRLLCDFRRAPFSG---RRRRAPQGSSEDR--ELGLALQEALEPAVRLGRYPRAQLE 145

Query: 114 IDCDVIQADGG 124
           +   +++ DGG
Sbjct: 146 VSALLLE-DGG 155


>gi|157169424|ref|XP_001651510.1| exosome complex exonuclease rrp42 (ribosomal RNA processing protein
           42 [Aedes aegypti]
 gi|108878402|gb|EAT42627.1| exosome complex exonuclease rrp42 (ribosomal RNA processing protein
           42 [Aedes aegypti]
          Length = 299

 Score = 78.2 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 44/264 (16%), Positives = 79/264 (29%), Gaps = 33/264 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR     R + L   +  +A GS  ++  +T +L     +   P   R  K G I  
Sbjct: 23  RNDGRTNRDYRPMELETDIVVHAMGSARLRLANTDILVAVKADIDAPSPDR-PKEGKIEF 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGS------RQII 113
                  +T +   R          + EI   + +A   +   DLS L         ++ 
Sbjct: 82  FVDCSANATPDFEGRGGE-----ELATEISNTLSKAYLSQQAFDLSPLCILAKHQCWKLY 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHME--DCSNKFQLSQVLKGHVAAI------- 164
           +D  +++  G    A       AL+            +   +  +L              
Sbjct: 137 VDILILECGGNLFDAVSLAVKAALYSTKLPRVSSAELDGGAMDIILSDDPYDCERLNIQT 196

Query: 165 -----SCGMLCGYPIVDLDYGEDSTI--DVDANFVMTDSGH--IVEVQGSAERATFSQDH 215
                +   +  Y +VD    E+      V       + G   +  ++ S E  +F  D 
Sbjct: 197 APLLVTVCKIGDYCVVDPSAEEEECSAISVVIGVSRKNGGKSSVTSIRTSGE-GSFHSDT 255

Query: 216 FFAMLNLAKDRIADLIKLQKDVIS 239
               L+L       L K     + 
Sbjct: 256 LMKSLDLGVSAATYLDKALMAALK 279


>gi|329936628|ref|ZP_08286335.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Streptomyces griseoaurantiacus
           M045]
 gi|329303858|gb|EGG47741.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Streptomyces griseoaurantiacus
           M045]
          Length = 740

 Score = 78.2 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 84/249 (33%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R ++          GS L + G+T +L   TL     E+    +      
Sbjct: 339 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRK 398

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RAL  V+         I    +
Sbjct: 399 RYMHNYNFPPFSVGETGRVGSPKRREIGHG----ALAERALVPVLPAREEFPYAIRQVSE 454

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP---- 173
            + ++G T   ++  + ++L +                 LK  VA I+ G++        
Sbjct: 455 ALGSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLISQEIEGET 501

Query: 174 ----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    +  +Q   +          A L  A+D    
Sbjct: 502 HYVTLTDILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLNGIPASVLAAALKQARDARLH 560

Query: 230 LIKLQKDVI 238
           ++ +  + I
Sbjct: 561 ILDVMMEAI 569



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 72/243 (29%), Gaps = 39/243 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      ++K A GS +    D T +L+  T     ++++  +             G 
Sbjct: 20  RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGK 79

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q++     +  D   
Sbjct: 80  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFAKGLRNEIQVVETIMALNPDHLY 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G +      ++ G  +    + E    
Sbjct: 134 DVVAINAASASTQLAGL-------------PFSGPIGGTRVALINGQWVAFPTHTELEDA 180

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
             D              I+ V+  A   T           +++   A L  AK  I  L 
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLIKGGAEAPTEEVVAAGLEAAKPFIKVLC 240

Query: 232 KLQ 234
           K Q
Sbjct: 241 KAQ 243


>gi|473949|dbj|BAA06226.1| KIAA0116 [Homo sapiens]
          Length = 290

 Score = 78.2 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 77/263 (29%), Gaps = 29/263 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R + +   V     GS  VK G T +L     E   P  +     G++ 
Sbjct: 21  LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QI 112
                   +T     R            EI   + R    +S VDL  L          +
Sbjct: 80  FFVDCSASATPEFEGRGG-----DDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVL 134

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ--VLKGHVAAISCGMLC 170
            +D  +++  G    A       AL +            + S+   L           + 
Sbjct: 135 YVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVE 194

Query: 171 GYP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
             P            +VD    E++         +T  G +  ++    + +   +  F 
Sbjct: 195 NVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVG-KGSLDPESIFE 253

Query: 219 MLNLAKDRIADLIKLQKDVISNE 241
           M+   K     L    + V+  E
Sbjct: 254 MMETGKRVGKVLHASLQSVLHKE 276


>gi|15215485|gb|AAH12831.1| Exosome component 7 [Homo sapiens]
 gi|168272912|dbj|BAG10295.1| exosome complex exonuclease RRP42 [synthetic construct]
          Length = 291

 Score = 78.2 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 77/263 (29%), Gaps = 29/263 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R + +   V     GS  VK G T +L     E   P  +     G++ 
Sbjct: 22  LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QI 112
                   +T     R            EI   + R    +S VDL  L          +
Sbjct: 81  FFVDCSASATPEFEGRGG-----DDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ--VLKGHVAAISCGMLC 170
            +D  +++  G    A       AL +            + S+   L           + 
Sbjct: 136 YVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVE 195

Query: 171 GYP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
             P            +VD    E++         +T  G +  ++    + +   +  F 
Sbjct: 196 NVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVG-KGSLDPESIFE 254

Query: 219 MLNLAKDRIADLIKLQKDVISNE 241
           M+   K     L    + V+  E
Sbjct: 255 MMETGKRVGKVLHASLQSVLHKE 277


>gi|195457250|ref|XP_002075492.1| GK14785 [Drosophila willistoni]
 gi|194171577|gb|EDW86478.1| GK14785 [Drosophila willistoni]
          Length = 415

 Score = 78.2 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 83/262 (31%), Gaps = 39/262 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           RL GR+    R++ LT      A+ G+ +V  GDT +L   + +   P   R    G + 
Sbjct: 29  RLDGRKSGDFRDVKLTFG----ADWGTVIVAIGDTKVLAQVSCDIGTPSSAR-PNEGTLH 83

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSALGSRQ------I 112
               +   +  N  +           S     ++ R  R+   +DL +L          +
Sbjct: 84  LNVSLGGVAYLNESQTTHDQRFLTLNS-----LLERTFRNSRSLDLESLCVAAEQHVWCV 138

Query: 113 IIDCDVIQADGGTRTAAITGAWVALH----------DCLQHMEDCSNKFQLSQVLKGHVA 162
            +D  V+  DG    A+   A  AL           D    +     +  +  +   +  
Sbjct: 139 RVDITVLNHDGNLYDASTVAALAALMHFRRPDVTFLDEEIRIYSDKERELIPLLFLHYPV 198

Query: 163 AISCGMLCGY---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
           +++  +       P VD    E++  D            +  +         +      +
Sbjct: 199 SVTYCLYKSNSHYPYVDPILLEENAADSIIVLSFNSYNELCSLNAGGS----TPTKAGII 254

Query: 220 LNLAKDRIAD---LIKLQKDVI 238
           +  A++       L+   K  +
Sbjct: 255 MQCARNAAKRSKSLVDFLKKAL 276


>gi|195143763|ref|XP_002012867.1| GL23700 [Drosophila persimilis]
 gi|194101810|gb|EDW23853.1| GL23700 [Drosophila persimilis]
          Length = 234

 Score = 78.2 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 81/234 (34%), Gaps = 31/234 (13%)

Query: 9   NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
           +++RE+          +GS +   G T +++      +V     +    ++   Y     
Sbjct: 13  DKLREMQCKFNPLSRCDGSVMYCQGATVVISAVLGPIEVKTQNLSIDGSYLECNY----- 67

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 + +A   +   R +E    +   L   +   A    ++ +    ++  G     
Sbjct: 68  ------RPKAGLPQVKERIREAA--VRDVLELALLSEAYPRSKMSLQIQELEDRGSIDAC 119

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDSTIDV 187
           A+  A +A+                   LK   AA+ C +   G  I+D D  E      
Sbjct: 120 ALNSACLAM-------------LIGGLPLKCSFAAVHCIINEQGEYILDPDQRETEHERA 166

Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
              F      G+++ VQ    + +F    F  + +L +   A++++  +  ISN
Sbjct: 167 SFTFAFDSLEGNLLLVQ---TKGSFKIAEFNDVESLCRSASAEILQFYRTSISN 217


>gi|73947485|ref|XP_852838.1| PREDICTED: similar to Exosome complex exonuclease RRP46 (Ribosomal
           RNA processing protein 46) (Exosome component 5) (p12B)
           (Chronic myelogenous leukemia tumor antigen 28) [Canis
           familiaris]
          Length = 235

 Score = 78.2 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 57/184 (30%), Gaps = 27/184 (14%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R  +  + +    +GS     GDT +L       +V                 +  ++T
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK------------VSKEIFNKAT 75

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
              + R  + G  G   +  +R+I     +VV  +      I +   V+   G      +
Sbjct: 76  LEVILRPKI-GLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCL 134

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDA 189
             A +AL D    M                   ++C +   G  ++D    ++       
Sbjct: 135 NAACMALVDAGVPMRAL-------------FCGVTCALNSDGTLVLDPTAKQEKEARAVL 181

Query: 190 NFVM 193
            F +
Sbjct: 182 TFAL 185


>gi|167518071|ref|XP_001743376.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778475|gb|EDQ92090.1| predicted protein [Monosiga brevicollis MX1]
          Length = 330

 Score = 78.2 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 81/245 (33%), Gaps = 29/245 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR  ++ RE   T        G   +  G T ++   T  E V         G+   
Sbjct: 28  RLDGRHRHEHRECKFTFH---QTPGFVELALGKTRVMAQLT-CEVVAPHPDYDSEGFFRF 83

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSAL----GSR--QII 113
              +   +      + +          E+ R++ RA +    +D  +L    G +  ++ 
Sbjct: 84  NVSIAAGAGIAYAAQRSS----SEEIVELTRLLERAFKEARAIDSESLCIVKGEKVWEVR 139

Query: 114 IDCDVIQADGGTRTAAITGA----------WVALHDCLQHMEDCSNKFQLSQVLKGHVAA 163
           +D  V++  G         A          +V+L      +        +S  +     A
Sbjct: 140 VDVTVLENGGNMADGVCLAALAGILTFRRPYVSLTGGQVKIHSLEEHEPVSLSVHHRPIA 199

Query: 164 ISCGMLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           ++   + G  + +VD    E++  +      +   G I  +  S      S +    +L 
Sbjct: 200 VTIASIAGGRHLLVDPTSLEEAVAEGCITVCLNGHGEICSI-NSGGGTPLSPEQMKELLQ 258

Query: 222 LAKDR 226
           LAK +
Sbjct: 259 LAKRK 263


>gi|320094033|ref|ZP_08025857.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319979038|gb|EFW10557.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 785

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 80/250 (32%), Gaps = 30/250 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR   Q+R +S    V     GS L + G+T +L   TL     E+    +     
Sbjct: 344 IRMDGRTPRQIRSLSAEVEVLPRVHGSALFQRGETQILGVTTLAMLRMEQQIDNLSPVNS 403

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 404 KRYMHQYNFAPFSTGEVGRVGSPKRREIGHG----DLAERALVPVLPTREEFPYAI---- 455

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
                    R  + T                 +  Q    L+  VA I+ G++ G     
Sbjct: 456 ---------RQVSETMGSNGSSSMGSVCASTLSLLQAGVPLRAPVAGIAMGLMTGEVDGQ 506

Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED   D+D     T    I  +Q   +          A L  A+D   
Sbjct: 507 PKAVTLTDILGAEDGFGDMDFKVAGTRDF-ITALQLDTKLDGIDSQLLRAALGQARDARL 565

Query: 229 DLIKLQKDVI 238
            ++ L    I
Sbjct: 566 AILDLINQAI 575



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 79/241 (32%), Gaps = 25/241 (10%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTATL----EEKVPMWIRNTKHGWITAEYGM 65
           R I      +++ A GS L    D T +L+  T+    +++   +             G 
Sbjct: 22  RTIRFETGRLARQAAGSALAYLDDATTVLSATTVGKNPKDQFDFFPLTVDVEERAYAAGR 81

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR G  +    R+I R LR           Q++     I  D   
Sbjct: 82  IP---GSFFRRE---GRPGTEAILAARLIDRPLRPGFVKGLRNEVQVVETVLTIDPDDAY 135

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA---------AISCGMLCGYPIVD 176
              AI  A ++               +L+ V    VA         ++   ++ G  +  
Sbjct: 136 DVLAINAASMSTQIAGLPFTGPIGGTRLALVDGQWVAFPRWSELERSVFNIVVAGRIVTK 195

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            D  ED    +              +Q  A     +++     L  AK  I  L + Q +
Sbjct: 196 DDGSEDVA--IMMVEAGGGKNEWELIQAGATAP--TEEVVADGLEAAKPFIKALCRAQLE 251

Query: 237 V 237
           V
Sbjct: 252 V 252


>gi|114677471|ref|XP_001152170.1| PREDICTED: exosome complex component RRP46 isoform 2 [Pan
           troglodytes]
          Length = 235

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 57/184 (30%), Gaps = 27/184 (14%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R  +  + +    +GS     GDT +L       +V                 +  ++T
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK------------VSKEIFNKAT 75

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
              + R  + G  G   +  +R+I     +VV  +      I +   V+   G      +
Sbjct: 76  LEVILRPKI-GLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCL 134

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDA 189
             A +AL D    M                   ++C +   G  ++D    ++       
Sbjct: 135 NAACMALVDAGVPMRAL-------------FCGVTCALDSDGTLVLDPTSKQEKEARAVL 181

Query: 190 NFVM 193
            F +
Sbjct: 182 TFAL 185


>gi|301776621|ref|XP_002923728.1| PREDICTED: exosome complex exonuclease RRP46-like [Ailuropoda
           melanoleuca]
          Length = 239

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 57/184 (30%), Gaps = 27/184 (14%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R  +  + +    +GS     GDT +L       +V                 +  ++T
Sbjct: 32  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK------------VSKEIFNKAT 79

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
              + R  + G  G   +  +R+I     +VV  +      I +   VI   G      +
Sbjct: 80  LEVILRPKI-GLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVISDAGSLLACCL 138

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDA 189
             A +AL D    M                   ++C +   G  ++D    ++       
Sbjct: 139 NAACMALVDAGVPMRAL-------------FCGVTCALNSDGTLVLDPTAKQEKEARAVL 185

Query: 190 NFVM 193
            F +
Sbjct: 186 TFAL 189


>gi|311252595|ref|XP_003125174.1| PREDICTED: polyribonucleotide nucleotidyltransferase 1,
           mitochondrial-like [Sus scrofa]
          Length = 487

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 88/268 (32%), Gaps = 60/268 (22%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLP 67
           R++ ++     ++A+GS +V+ GDT ++ TA   T             +    A  G +P
Sbjct: 54  RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIP 113

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GT 125
               N ++RE  S     +     R+I R++R +         QI+  C+++  DG    
Sbjct: 114 ---TNYLRREIGS---SDKEILTSRVIDRSIRPLFPAGYFYDTQIL--CNLLAVDGVNEP 165

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD------- 178
              AI GA VAL                     G + A+  GM+ G  +V+         
Sbjct: 166 DVLAINGASVALS-------------LSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSS 212

Query: 179 -------------------------YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
                                      ED   D+D     T  G I  +Q   +      
Sbjct: 213 TLNLVVTGAPKSQIDVQPAVCAFVKGIEDYHGDMDFKIAGTAKG-ITALQADIKLPGIPI 271

Query: 214 DHFFAMLNLAKDRIADLIKLQKDVISNE 241
                 +  A     +++++    I   
Sbjct: 272 KIVMEAIQQASVAKKEILQIMNKTIPKP 299


>gi|300743980|ref|ZP_07073000.1| polyribonucleotide nucleotidyltransferase [Rothia dentocariosa
           M567]
 gi|300380341|gb|EFJ76904.1| polyribonucleotide nucleotidyltransferase [Rothia dentocariosa
           M567]
          Length = 753

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 90/252 (35%), Gaps = 34/252 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R+++    V     GS + + G+T ++   T      LE+++      T
Sbjct: 361 VRIDGRGLTDIRQLTAEVEVLPRVHGSAIFERGETQIM-GVTTLNMLKLEQQLDSLYPVT 419

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              +I   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 420 SKRYIH-HYNFPPYSTGETGRVGSPKRREIGHG----ALAERALTPVLPSREEFPYAIRQ 474

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP- 173
             + + ++G T   ++  + ++L +                 L+  VA I+ G++     
Sbjct: 475 VSEALGSNGSTSMGSVCASTLSLLNAGV-------------PLRAPVAGIAMGLVSDEVN 521

Query: 174 -------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                  + D+   ED+  D+D     T    +  +Q   +            L  A++ 
Sbjct: 522 GETRYAALTDILGAEDALGDMDFKVAGTSEF-VTAIQLDTKLDGIPASVLAGALTQAREA 580

Query: 227 IADLIKLQKDVI 238
              ++ +    I
Sbjct: 581 RLHILDVLTAAI 592



 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 78/248 (31%), Gaps = 44/248 (17%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLL-TTA---TLEEKVPMWIRNTKHGWITAEYGM 65
           R +      ++K A GS LV   D T LL  TA   +  E    +             G 
Sbjct: 35  RHVRFETGRLAKQAAGSVLVTIDDETTLLSATAIGKSPREGFDFFPLTVDVEERMYAAGK 94

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q+++    I+ D   
Sbjct: 95  IP---GSFFRRE---GRPPTEAILAARLIDRPLRPAFTKGIRNEVQVVVTVLTIEPDEIY 148

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
            T AI  A  +                      G +  +   ++ G  +    Y +    
Sbjct: 149 NTFAINAASASTALSGA-------------PFSGPIGGVRMALIDGQWVCFPKYSQLENA 195

Query: 186 DVDANFV--------MTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDR 226
             D             ++   I+ V+  A   ++           +++     L  AK  
Sbjct: 196 VFDMAVAGRIVTKADGSEDVAIMMVEAEATDNSWKLIKEDGHAAPTEEIVAEGLEAAKPF 255

Query: 227 IADLIKLQ 234
           IA L K Q
Sbjct: 256 IAALCKAQ 263


>gi|221488740|gb|EEE26954.1| exosome complex exonuclease, putative [Toxoplasma gondii GT1]
          Length = 352

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/321 (16%), Positives = 90/321 (28%), Gaps = 103/321 (32%)

Query: 1   MRLSGRQENQMREISLTR---------------------------------------RVS 21
           +R  GR+ +++RE+  +                                         V 
Sbjct: 21  LRADGRRPHELRELRFSTCVPSLLPSPSARPASASDPRKADSSVESEENNLAPFASGGVG 80

Query: 22  KYAEGSCLVKFGDTHLLTTATLEEKVPMW--------IRNTKHGW--------------- 58
            +A+G  LV FG T +         +P          +  +  GW               
Sbjct: 81  THADGRSLVSFGSTKVAAFVFGPRPLPAGAGNASRALVSASGGGWSERGVLEEGFDASGA 140

Query: 59  --------------------ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL 98
                               +    G+ P S   R       G       E+   + + +
Sbjct: 141 DSVLGQGGAAGSGGAAERASLLCRVGIAPFSGDWRADVTRSGG--AAEEHEVALGVRKVV 198

Query: 99  RSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK 158
            SV+         I +   V++ DGG   A+I+ A +AL D                  K
Sbjct: 199 ESVILADTCPRSLICLFVHVVENDGGILAASISAASLALVDAGIA-------------TK 245

Query: 159 GHVAAISCGMLCGY--PIVDLDYGEDSTIDVDANFVMT-DSGHIVEVQGSAERATFSQDH 215
             VAA+SC  +     P++D    E  T        M   S  +  +Q   + +T   D 
Sbjct: 246 DFVAAMSCVYMPRQLTPLLDPPRAELQTGAPSLTLAMLVSSDEVSLLQLDGQVST---DV 302

Query: 216 FFAMLNLAKDRIADLIKLQKD 236
           F  M         ++ +  K 
Sbjct: 303 FEQMYEACAAGCREVGEAMKA 323


>gi|311113230|ref|YP_003984452.1| polyribonucleotide nucleotidyltransferase [Rothia dentocariosa ATCC
           17931]
 gi|310944724|gb|ADP41018.1| polyribonucleotide nucleotidyltransferase [Rothia dentocariosa ATCC
           17931]
          Length = 753

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 90/252 (35%), Gaps = 34/252 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R+++    V     GS + + G+T ++   T      LE+++      T
Sbjct: 361 VRIDGRGLTDIRQLTAEVEVLPRVHGSAIFERGETQIM-GVTTLNMLKLEQQLDSLYPVT 419

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              +I   Y   P STG   +  +   R+ G       +  RAL  V+         I  
Sbjct: 420 SKRYIH-HYNFPPYSTGETGRVGSPKRREIGHG----ALAERALTPVLPSREEFPYAIRQ 474

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP- 173
             + + ++G T   ++  + ++L +                 L+  VA I+ G++     
Sbjct: 475 VSEALGSNGSTSMGSVCASTLSLLNAGV-------------PLRAPVAGIAMGLVSDEVD 521

Query: 174 -------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                  + D+   ED+  D+D     T    +  +Q   +            L  A++ 
Sbjct: 522 GETRYAALTDILGAEDALGDMDFKVAGTSEF-VTAIQLDTKLDGIPASVLAGALTQAREA 580

Query: 227 IADLIKLQKDVI 238
              ++ +    I
Sbjct: 581 RLHILDVLTAAI 592



 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 78/248 (31%), Gaps = 44/248 (17%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLL-TTA---TLEEKVPMWIRNTKHGWITAEYGM 65
           R +      ++K A GS LV   D T LL  TA   +  E    +             G 
Sbjct: 35  RHVRFETGRLAKQAAGSVLVTIDDETTLLSATAIGKSPREGFDFFPLTVDVEERMYAAGK 94

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q+++    I+ D   
Sbjct: 95  IP---GSFFRRE---GRPPTEAILAARLIDRPLRPAFTKGIRNEVQVVVTVLTIEPDEIY 148

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
            T AI  A  +                      G +  +   ++ G  +    Y +    
Sbjct: 149 NTFAINAASASTALSGA-------------PFSGPIGGVRMALIDGQWVCFPKYSQLENA 195

Query: 186 DVDANFV--------MTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDR 226
             D             ++   I+ V+  A   ++           +++     L  AK  
Sbjct: 196 VFDMAVAGRIVTKADGSEDVAIMMVEAEATDNSWKLIKEDGHAAPTEEIVAEGLEAAKPF 255

Query: 227 IADLIKLQ 234
           IA L K Q
Sbjct: 256 IAALCKAQ 263


>gi|15218985|ref|NP_176216.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis
           thaliana]
 gi|4249388|gb|AAD14485.1| Similar to gb|AF025438 Opa-interacting protein (OIP2) from Homo
           sapiens [Arabidopsis thaliana]
 gi|28416659|gb|AAO42860.1| At1g60080 [Arabidopsis thaliana]
 gi|110735926|dbj|BAE99938.1| hypothetical protein [Arabidopsis thaliana]
 gi|332195536|gb|AEE33657.1| 3' exoribonuclease domain 1-containing protein [Arabidopsis
           thaliana]
          Length = 302

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/268 (20%), Positives = 95/268 (35%), Gaps = 43/268 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GRQ  + R+  +   +   A+GS L K G T +L    +E   P    +   G I 
Sbjct: 36  LRPDGRQLGKARDTIVNLGLVSTADGSALAKIGSTTMLAAIRMEVMTPS-TDSPDEGCIA 94

Query: 61  AEYGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALG------SRQ 111
            E+ M P  +   R  R A +         I + +   +    ++DL  L       +  
Sbjct: 95  IEFHMPPICSPTVRPGRPAEAAPV------ISKRLSDTILSSGMIDLKELCLVSGKAAWM 148

Query: 112 IIIDCDVIQADG--------------------------GTRTAAITGAWVALHDCLQHME 145
             +D   + ADG                            R  A+TG      + L   +
Sbjct: 149 GYLDIYCLDADGALFDAALLAAVAAFSNLQIPIVALNDNGRIVAVTGEK-DQDNALITEK 207

Query: 146 DCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
           +  NK +    LK    +++C +   Y + D    E+S +D     V+  S  +V    S
Sbjct: 208 EAVNKEKRKLTLKNIPFSLTCILHKNYILADPTTEEESIMDTLVTVVLDSSDQMVSFYKS 267

Query: 206 AERATFSQDHFFAMLNLAKDRIADLIKL 233
              A        + + LA+ R  +L ++
Sbjct: 268 GGAALAYSSAIKSCVELARKRAKELKQI 295


>gi|269795632|ref|YP_003315087.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Sanguibacter keddieii DSM 10542]
 gi|269097817|gb|ACZ22253.1| guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
           [Sanguibacter keddieii DSM 10542]
          Length = 735

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 93/251 (37%), Gaps = 32/251 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
           +R+ GR    +R +S    V     GS + + G+T ++   TL     E+++      T+
Sbjct: 339 VRIDGRGLADIRTLSAEVEVVPRVHGSAIFERGETQIMGITTLNMLRMEQQIDSLGPETR 398

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
             ++   Y   P STG   +  +   R+ G       +  RAL  V+         I   
Sbjct: 399 KRYMH-NYNFPPYSTGETGRVGSPKRREIGHG----ALAERALVPVLPTREEFPYAIRQV 453

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM----LCG 171
            + + ++G T   ++  + ++L +                 L+  VA I+ G+    + G
Sbjct: 454 SEALSSNGSTSMGSVCASTLSLLNAGV-------------PLRAPVAGIAMGLISDTVDG 500

Query: 172 YP----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
            P    + D+   ED+  D+D     T    +  +Q   +            L  A+D  
Sbjct: 501 KPRYAALTDILGAEDAFGDMDFKVAGTREF-VTAIQLDTKLDGIPASVLGGALTQARDAR 559

Query: 228 ADLIKLQKDVI 238
             ++ +  + I
Sbjct: 560 FAILDVLGEAI 570



 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 46/145 (31%), Gaps = 19/145 (13%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  +RE   GR    +    R+I R LR           Q+++       D    T AI
Sbjct: 83  GSFFRRE---GRPSTEAILTCRLIDRPLRPTFVKGLRNEVQVVVTVLAAHPDDAYDTLAI 139

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
             A ++                      G V A+   ++ G  +    Y +      D  
Sbjct: 140 NVASLSTQLSGL-------------PFSGPVGAVRIALVDGQWVAFPKYSDKEKAVFDMV 186

Query: 191 F---VMTDSGHIVEVQGSAERATFS 212
               V  D   I+ V+  A   +++
Sbjct: 187 VAGRVAGDDVAIMMVEAEATDNSWT 211


>gi|313221392|emb|CBY32145.1| unnamed protein product [Oikopleura dioica]
          Length = 288

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 84/261 (32%), Gaps = 31/261 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR  N  R I +     +   GS  V+ G T LL     E +    + +   G I 
Sbjct: 25  MRTDGRTCNDFRVIEMETSCIETTNGSARVRIGSTELLVGVKAELE-KASLVDGDAGRIE 83

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQ--EIQRMIGR--ALRSVVDLSALGSR------ 110
                 P +T          GR+GG     EI  +  R       +D   L         
Sbjct: 84  FSVDCSPNAT------PMFEGRRGGEDIEAEIASLFSRFYKAEEFMDRKKLTVVPNAWCW 137

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM-------EDCSNKFQLSQVLKG---- 159
            + +D  +++  G    A+      AL D    +       ED  +       L G    
Sbjct: 138 VLYVDILILEVGGNLVDASSIAVKAALRDTRLPLLNIEKGDEDEFDIQVSDDPLDGEELD 197

Query: 160 --HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
                 ++   L    IVD    E++    +    + ++G    ++ +  + +       
Sbjct: 198 IHPPLTVTVAKLGHRYIVDPTDEEEAVTLANLIVSVNENGEARGMKQTG-KGSLDPSSIL 256

Query: 218 AMLNLAKDRIADLIKLQKDVI 238
            M+++AK     L +     +
Sbjct: 257 EMISIAKKAAKTLHRSVNRAL 277


>gi|113679482|ref|NP_001038817.1| exosome complex exonuclease RRP46 isoform 1 [Danio rerio]
 gi|112419436|gb|AAI22388.1| Exosome component 5 [Danio rerio]
 gi|182891334|gb|AAI64315.1| Exosc5 protein [Danio rerio]
          Length = 218

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 73/230 (31%), Gaps = 29/230 (12%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +RE    + +    +GS     GDT +L       +V   +    +   T E  + P   
Sbjct: 10  LREYGSEQSLLSRPDGSSTFVQGDTSILAGVYGPAEVK--VSKEIYDRATVEVLIQP--- 64

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
                     G    R +  ++ +     + + L+      + +   V+  DG   +  +
Sbjct: 65  --------KMGLPSVRERAREQCVRETCEAALLLTLHPRSSLTVILQVVHDDGSLLSCCL 116

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDA 189
             A +AL D    M                  +++C +   G  I D    ++       
Sbjct: 117 NAACMALMDAGLPMSRL-------------FCSVTCAISKEGQIITDPTARQEKVSRALL 163

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            F +  +   V    S+   +FS       + +++     + +  +D + 
Sbjct: 164 TFAIDSNERNVL--MSSTTGSFSVQELQQCIAISQKASEQIFQFYRDSVK 211


>gi|149722162|ref|XP_001500390.1| PREDICTED: similar to Exosome component 5 [Equus caballus]
          Length = 235

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 57/184 (30%), Gaps = 27/184 (14%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R  +  + +    +GS     GDT +L       +V                 +  ++T
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK------------VSKEIFNKAT 75

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
              + R  + G  G   +  +R+I     +VV  +      I +   VI   G      +
Sbjct: 76  LEVILRPKI-GLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVISDAGSLLACCL 134

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDA 189
             A +AL D    M                   ++C +   G  ++D    ++       
Sbjct: 135 NAACMALVDAGVPMRAL-------------FCGVTCALDSDGTLMLDPTAKQEKEARAVL 181

Query: 190 NFVM 193
            F +
Sbjct: 182 TFAL 185


>gi|194675249|ref|XP_001790575.1| PREDICTED: exosome component 5-like [Bos taurus]
 gi|297485653|ref|XP_002695041.1| PREDICTED: exosome component 5-like [Bos taurus]
 gi|296477725|gb|DAA19840.1| exosome component 5-like [Bos taurus]
          Length = 242

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 73/238 (30%), Gaps = 40/238 (16%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R  +  + +    +GS     GDT +L       +V +               +  ++T
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKISK------------EIFNKAT 75

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG------ 124
              + R   +G  G   +  +R+I     +VV  +      I +   V+   G       
Sbjct: 76  LEVILRP-KTGLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDAGSKLNHCL 134

Query: 125 -TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGED 182
                 +  A +AL D    M                   ++C +   G  ++D    ++
Sbjct: 135 WLLACCLNAACMALVDAGVPMRAL-------------FCGVTCALDSDGTLMLDPTAKQE 181

Query: 183 STIDVDANFVMTDSGHIVE--VQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
                   F +      VE  +  S  +  +S       L  A+     + +  ++ +
Sbjct: 182 KEARAVLTFALDS----VERKLLMSTTKGLYSDTELQQCLAAAQTASTHVFRFYRESL 235


>gi|66801297|ref|XP_629574.1| hypothetical protein DDB_G0292692 [Dictyostelium discoideum AX4]
 gi|60462952|gb|EAL61149.1| hypothetical protein DDB_G0292692 [Dictyostelium discoideum AX4]
          Length = 293

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 85/262 (32%), Gaps = 39/262 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  + +R+ +++      A+GS  VK G T ++     E      I  +K   + 
Sbjct: 21  VRPDGRSLDDIRKTTISTGSITTADGSSFVKIGSTSVVCGVRAEVGEKPSIDKSKFSTLN 80

Query: 61  A--------EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ- 111
                       + P  +         S +      +I   +   L S+++   +     
Sbjct: 81  VHENKNIFINIELGPICSNT-----FSSSKPS----DIAMSLCSRLNSLINRLEIPETDY 131

Query: 112 -----------IIIDCDVIQADGGTRTAAITGAWVALHDC-----LQHMEDCSNKFQLSQ 155
                      + +D   +  DG    AA+     AL +      +    D   K   S 
Sbjct: 132 YFDEEGKALWYLYVDVYCLDYDGNIYDAAVLSIISALKNVKLPKGIIENNDEFYKDLESP 191

Query: 156 VLK----GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
             K     ++  +S  ++  Y + D    E+       N    +   I  +  S   +  
Sbjct: 192 QRKLNIQHYLIPLSFSVIDDYILADPSLDEEKLSSGTINITYNELNEICLLLSSG-TSLI 250

Query: 212 SQDHFFAMLNLAKDRIADLIKL 233
           S+ +    +  AK+R   +I L
Sbjct: 251 SKTNLKTCMEKAKERSTFIIDL 272


>gi|313236425|emb|CBY11742.1| unnamed protein product [Oikopleura dioica]
          Length = 288

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 84/261 (32%), Gaps = 31/261 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR  N  R I +     +   GS  V+ G T LL     E +    + +   G I 
Sbjct: 25  MRTDGRTCNDFRVIEMETSCIETTNGSARVRIGSTELLVGVKAELE-KASLVDGDAGRIE 83

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQ--EIQRMIGR--ALRSVVDLSALGSR------ 110
                 P +T          GR+GG     EI  +  R       +D   L         
Sbjct: 84  FSVDCSPNAT------PMFEGRRGGEDIEAEIASLFSRFYKAEEFMDRKKLTVVPNAWCW 137

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM-------EDCSNKFQLSQVLKG---- 159
            + +D  +++  G    A+      AL D    +       ED  +       L G    
Sbjct: 138 VLYVDILILEVGGNLVDASSIAVKAALRDTRLPLLNIEKGDEDEYDIQVSDDPLDGEELD 197

Query: 160 --HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
                 ++   L    IVD    E++    +    + ++G    ++ +  + +       
Sbjct: 198 IHPPLTVTVAKLGHRYIVDPTDEEEAVTLANLIVSVNENGEARGMKQTG-KGSLDPSSIL 256

Query: 218 AMLNLAKDRIADLIKLQKDVI 238
            M+++AK     L +     +
Sbjct: 257 EMISIAKKAAKTLHRSVNRAL 277


>gi|56758238|gb|AAW27259.1| SJCHGC04772 protein [Schistosoma japonicum]
          Length = 277

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 77/219 (35%), Gaps = 31/219 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  ++ R + +   +  +A GS  ++ G+T ++    +E   P   R    G I  
Sbjct: 23  RMDGRGPSEYRPLEIETNILSHATGSASIRIGETFIVCCVKMEVGKPSLTRL-NEGRIEI 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV-----VDLSALGSR------ 110
                P +T  R   +  S        E+   +   L+S      ++L++L  +      
Sbjct: 82  NVECYPTAT-YRCNEKGAS--------ELAERLKTTLQSTYQSEFINLNSLCIQRGRQCW 132

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG----------H 160
            I ID  +++  G    A+      AL +  Q     S+ F+                  
Sbjct: 133 VIYIDLLILEGAGNLLDASSLVIKAALLNATQSNSFLSSVFRNDTNTSDTEIQNCNEDML 192

Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHI 199
              ++   +    I+D    E++      + V+   G I
Sbjct: 193 PLFVTVHKIGNAYIIDATKEEEACSLSRLSLVIYPDGSI 231


>gi|332020128|gb|EGI60572.1| Exosome complex exonuclease RRP46 [Acromyrmex echinatior]
          Length = 220

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 69/214 (32%), Gaps = 32/214 (14%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R I+    +   ++GS +   GDT ++       +            I   Y  L    
Sbjct: 12  LRPINCEINLLSRSDGSTMFMQGDTTIIAGVNGPLEAKSQKMAYDRVSIEVTYTPL---- 67

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
                      +   R  E    I     S + +S   +  + I+   +Q  GG    AI
Sbjct: 68  -------KGPAKVDDRLIET--YIKETCESAILVSFHPNTMVCINLQEMQDSGGLLACAI 118

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC--GYPIVDLDYGEDSTIDVD 188
             + +AL +    M             +  VAAISC +    G  I+D D  +      +
Sbjct: 119 NASCLALINSGLSM-------------RFTVAAISCMIEKETGDIIMDPDSSQLKNARAE 165

Query: 189 ANFVMTDSGH-IVEVQGSAERATFSQDHFFAMLN 221
             +        IV    +     FSQ+ F   ++
Sbjct: 166 FTYAFDSINKDIVCCHSTGR---FSQNEFLTSMD 196


>gi|225430430|ref|XP_002285435.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296082105|emb|CBI21110.3| unnamed protein product [Vitis vinifera]
          Length = 287

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 83/258 (32%), Gaps = 34/258 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+    R  ++   V   A GS  V+ G T ++ +   E   P        G + 
Sbjct: 20  LRTDGRRRLTYRPFNVETGVIPQANGSARVRLGGTDVIASVKAELGKPS-PSQPDKGKVN 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL-------RSVVDLSALGSRQ-- 111
                 P +      R          S E+   +   L        + +DLS+L   +  
Sbjct: 79  IYVDCSPTAAPMFEGRGGE-----ELSTELSGALQHCLLGGKSGAGAGIDLSSLVVVEGK 133

Query: 112 ----IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA---- 163
               + ID  V+ +DG    A       AL +      + +       + +  ++     
Sbjct: 134 VCWDLYIDGLVVSSDGNLLDALGAAIKAALTNTGIPKVEVAVGASGDGLPEVDISDDEYL 193

Query: 164 ----------ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
                     ++   +  + IVD    E+S +    +  ++  G I  +      A    
Sbjct: 194 QFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAVSVSVSGQGRICGLIKRG-GAGLDP 252

Query: 214 DHFFAMLNLAKDRIADLI 231
                M+++AK     L+
Sbjct: 253 SVILDMISVAKHVSEQLM 270


>gi|328885433|emb|CCA58672.1| Polyribonucleotide nucleotidyltransferase [Streptomyces venezuelae
           ATCC 10712]
          Length = 739

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 85/250 (34%), Gaps = 30/250 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R ++          GS L + G+T +L   TL     E+    +     
Sbjct: 338 VRIDGRGITDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 397

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  +   R+ G       +  RAL  V+         I    
Sbjct: 398 KRYMHNYNFPPYSVGETGRVGSPKRREIGHG----ALAERALVPVLPTREEFPYAIRQVS 453

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + + ++G T   ++  + ++L +                 LK  VA I+ G++       
Sbjct: 454 EALGSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLISEEIDGQ 500

Query: 173 ----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T    +  +Q   +          A L  A+D   
Sbjct: 501 THYVALTDILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARL 559

Query: 229 DLIKLQKDVI 238
            ++ +  + I
Sbjct: 560 HILDVMMEAI 569



 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 73/243 (30%), Gaps = 39/243 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      ++K A GS +    D T +L+  T     ++++  +             G 
Sbjct: 20  RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDQLDFFPLTVDVEERQYAAGK 79

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           QI+     +  D   
Sbjct: 80  IP---GSFFRRE---GRPSEDAVLTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLY 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G + A    ++ G  +    + E    
Sbjct: 134 DVVAINAASASTILAGL-------------PFSGPIGATRVALIKGQWVAFPTHTELEDA 180

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
             D              I+ V+  A   T           +++   A L  AK  I  L 
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIALVKGGAEAPTEEIVAAGLEAAKPFIKVLC 240

Query: 232 KLQ 234
           K Q
Sbjct: 241 KAQ 243


>gi|122920910|pdb|2NN6|D Chain D, Structure Of The Human Rna Exosome Composed Of Rrp41,
           Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
          Length = 237

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 57/184 (30%), Gaps = 27/184 (14%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R  +  + +    +GS     GDT +L       +V                 +  ++T
Sbjct: 30  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK------------VSKEIFNKAT 77

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
              + R  + G  G   +  +R+I     +VV  +      I +   V+   G      +
Sbjct: 78  LEVILRPKI-GLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCL 136

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDA 189
             A +AL D    M                   ++C +   G  ++D    ++       
Sbjct: 137 NAACMALVDAGVPMRAL-------------FCGVACALDSDGTLVLDPTSKQEKEARAVL 183

Query: 190 NFVM 193
            F +
Sbjct: 184 TFAL 187


>gi|320533267|ref|ZP_08033971.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320134517|gb|EFW26761.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 785

 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 91/252 (36%), Gaps = 34/252 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR    +R ++    V     GS + + G+T +L   T      +E++V      T
Sbjct: 344 VRMDGRGLKDIRTLAAEVEVLPRVHGSAIFERGETQIL-GVTTLNMLRMEQQVDDLSPVT 402

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
              ++   Y   P STG   +  A   R+ G       +  RA+  V+         I  
Sbjct: 403 HKRYMH-NYNFPPFSTGETGRVGAPKRREIGHG----NLAERAIVPVLPAREDFPYAIRQ 457

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG----MLC 170
             + + ++G T   ++  + ++L +                 L+  VA I+ G    ++ 
Sbjct: 458 VSEALGSNGSTSMGSVCASTLSLLNAGV-------------PLRAPVAGIAMGLMHEVID 504

Query: 171 GY----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           G      + D+   ED+  D+D     T    I  +Q   +      +     L  A+D 
Sbjct: 505 GETKWATLTDILGSEDAFGDMDFKVAGTRDF-ITALQLDTKLDGLPSEVLAGALGQARDA 563

Query: 227 IADLIKLQKDVI 238
              ++ +    I
Sbjct: 564 RLFILDVLAQAI 575



 Score = 65.1 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 72/243 (29%), Gaps = 33/243 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKF-GDTHLL-TTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
           R +      ++K A GS +    G+T +L  T   +     +        +        R
Sbjct: 23  RVVRFETGRLAKQAAGSAMAYLDGETAVLSATTVGKHPKDQFDFFPLTVDVEERQYAAGR 82

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
             G+  +RE   GR G  +    R+I R LR           Q++     I  D      
Sbjct: 83  IPGSFFRRE---GRAGTAAILACRLIDRPLRPSFVKGLRNEVQVVETVLAIHPDDDYDVL 139

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           AI  A ++                      G VA     ++ G+ +    Y E       
Sbjct: 140 AINAASMSTQIAGL-------------PFSGPVAGTRLALIDGHWVAFPRYSEQQRATFQ 186

Query: 189 ANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIKLQ 234
                    +    I+ V+  A    +          ++      L  AK  I  L + Q
Sbjct: 187 MVVAGRVLESGDVAIMMVEAGATEHAWELINAGAVAPTEAVVAEGLEAAKPHIKALCEAQ 246

Query: 235 KDV 237
            +V
Sbjct: 247 LEV 249


>gi|281340717|gb|EFB16301.1| hypothetical protein PANDA_012923 [Ailuropoda melanoleuca]
          Length = 206

 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 57/184 (30%), Gaps = 27/184 (14%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R  +  + +    +GS     GDT +L       +V                 +  ++T
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK------------VSKEIFNKAT 75

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
              + R  + G  G   +  +R+I     +VV  +      I +   VI   G      +
Sbjct: 76  LEVILRPKI-GLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVISDAGSLLACCL 134

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDA 189
             A +AL D    M                   ++C +   G  ++D    ++       
Sbjct: 135 NAACMALVDAGVPMRAL-------------FCGVTCALNSDGTLVLDPTAKQEKEARAVL 181

Query: 190 NFVM 193
            F +
Sbjct: 182 TFAL 185


>gi|324512760|gb|ADY45272.1| Exosome complex exonuclease MTR3 [Ascaris suum]
          Length = 202

 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 76/226 (33%), Gaps = 35/226 (15%)

Query: 16  LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           +   V    +GS  ++ G T ++ T     K P    +T          ++  +      
Sbjct: 1   MRCGVFDTRKGSAFIEMGATKVVCTIDGP-KEPSKSMDTDCSEGVINVQVVGVAG----- 54

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
                         +  +I  ALR+++ L  L   Q+ ++  V++ DGG   AA+  + +
Sbjct: 55  --------------LSHVIESALRAIIALEHLSKMQVDVEVTVLEDDGGVLAAALMCSSL 100

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
           AL +      D              VAA       G   +D    E          +M  
Sbjct: 101 ALCNAGIQTLDF------------CVAAHVIITEDGSLKLDASSSEGDGCASVTVALMPS 148

Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
               V  +    R   +   F + L+LA      L  + K+ I+++
Sbjct: 149 LKQNVCCE---HRGISTLKQFKSALSLAAKSSLYLWPVLKNAITHQ 191


>gi|47174864|ref|NP_064543.3| exosome complex component RRP46 [Homo sapiens]
 gi|14285757|sp|Q9NQT4|EXOS5_HUMAN RecName: Full=Exosome complex component RRP46; AltName:
           Full=Chronic myelogenous leukemia tumor antigen 28;
           AltName: Full=Exosome component 5; AltName:
           Full=Ribosomal RNA-processing protein 46; AltName:
           Full=p12B
 gi|8927592|gb|AAF82135.1|AF281134_1 exosome component Rrp46 [Homo sapiens]
 gi|208966242|dbj|BAG73135.1| exosome component 5 [synthetic construct]
          Length = 235

 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 57/184 (30%), Gaps = 27/184 (14%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R  +  + +    +GS     GDT +L       +V                 +  ++T
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK------------VSKEIFNKAT 75

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
              + R  + G  G   +  +R+I     +VV  +      I +   V+   G      +
Sbjct: 76  LEVILRPKI-GLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCL 134

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDA 189
             A +AL D    M                   ++C +   G  ++D    ++       
Sbjct: 135 NAACMALVDAGVPMRAL-------------FCGVACALDSDGTLVLDPTSKQEKEARAVL 181

Query: 190 NFVM 193
            F +
Sbjct: 182 TFAL 185


>gi|133918795|emb|CAL29602.1| polyribonucleotide nucleotidyltransferase [Agrobacterium
           rhizogenes]
          Length = 180

 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 63/175 (36%), Gaps = 8/175 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---- 57
           R+ GR  + +R I     V     GS L   G+T  +  ATL         ++  G    
Sbjct: 7   RIDGRDLSTVRAIVSEVGVLPRTHGSSLFTRGETQAIVVATLGTGEDEQYVDSLTGMYKE 66

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +     G  G R     ++  RA+R ++  +      + +  +
Sbjct: 67  RFLLHYNFPPYSVGETGR----MGSPGRREIGHGKLAWRAVRPMLPTAEQFPYTLRVVSE 122

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           + +++G +  A + G  +AL D    +        +  + +    A+   +L   
Sbjct: 123 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDE 177


>gi|14043511|gb|AAH07742.1| Exosome component 5 [Homo sapiens]
 gi|78394993|gb|AAI07697.1| Exosome component 5 [Homo sapiens]
 gi|119577442|gb|EAW57038.1| exosome component 5 [Homo sapiens]
 gi|325463845|gb|ADZ15693.1| exosome component 5 [synthetic construct]
          Length = 235

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 57/184 (30%), Gaps = 27/184 (14%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R  +  + +    +GS     GDT +L       +V                 +  ++T
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK------------VSKEIFNKAT 75

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
              + R  + G  G   +  +R+I     +VV  +      I +   V+   G      +
Sbjct: 76  LEVILRPKI-GLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCL 134

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDA 189
             A +AL D    M                   ++C +   G  ++D    ++       
Sbjct: 135 NAACMALVDAGVPMRAL-------------FCGVACALDSDGTLVLDPTSKQEKEARAVL 181

Query: 190 NFVM 193
            F +
Sbjct: 182 TFAL 185


>gi|195379434|ref|XP_002048484.1| GJ13996 [Drosophila virilis]
 gi|194155642|gb|EDW70826.1| GJ13996 [Drosophila virilis]
          Length = 329

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 8/137 (5%)

Query: 12  REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWITAEYGMLPRST 70
           R   +   V     GS  +++G+T +L       + V    R    G I         ++
Sbjct: 46  RSTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPRELVRSSARRVNMGVINCYVNFAAFAS 105

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G     E+V      R + +  M+ +AL  +V  +   + Q+ I   ++  DG   + AI
Sbjct: 106 GEL---ESVP----EREKHLGSMLTKALEPLVCRNEFLNFQLDIRVLILDDDGCLLSTAI 158

Query: 131 TGAWVALHDCLQHMEDC 147
               VAL +C     D 
Sbjct: 159 NCCGVALIECGISTYDL 175


>gi|308509680|ref|XP_003117023.1| CRE-CRN-5 protein [Caenorhabditis remanei]
 gi|308241937|gb|EFO85889.1| CRE-CRN-5 protein [Caenorhabditis remanei]
          Length = 214

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 70/242 (28%), Gaps = 41/242 (16%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
           GR    +RE+       K A+GS     G T +  + +    V     N +   +   Y 
Sbjct: 3   GR----LREMRCELSFLKNADGSACFSQGSTCIWASCSGPGDVHASKANEEAMTLDISYR 58

Query: 65  ML----PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
                   S                    +  +I   +   ++L       I +    IQ
Sbjct: 59  ANCGDNKFSV-------------------LNNIIQSTISKAINLELFPHTTIAVTIHGIQ 99

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
            DG     AI GA  AL D                  +     +    +    I+D    
Sbjct: 100 DDGSIGAVAINGACFALLD-------------NGMPFEAVFCGVLVVRVKDELIIDPTAK 146

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ++++      F V   +    EV        +  +   A  +LA+     + +  + V+ 
Sbjct: 147 QEASSTGRVLFAVFNGTDGHPEVCSMDAIGQWDFNQLEAAWSLAQPSATAIFEFYRSVMQ 206

Query: 240 NE 241
            +
Sbjct: 207 RK 208


>gi|113197990|gb|AAI21334.1| hypothetical LOC496941 [Xenopus (Silurana) tropicalis]
          Length = 291

 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 81/263 (30%), Gaps = 29/263 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR     R I +   V     GS  VK G T +L     E   P  +     G++ 
Sbjct: 22  LRTDGRGCEDYRCIEVETDVVSNTTGSARVKIGHTDVLVGVKAEMGTPK-LERPGEGYLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSRQ------I 112
                   +T     R            EI  M+ +    RS +DL +L  ++      +
Sbjct: 81  FFVDCSANATPEFEGRGGE-----ELGAEIAFMLYKIFDNRSSIDLESLCIQEREHCWVL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDC------SNKFQLSQVLKGHV----- 161
            +D  +++  G            AL +                 F+LS      V     
Sbjct: 136 YVDVLLLECGGNLFDTISVAVKAALFNARIPKVRILEDDEGGKDFELSDDPYDCVRLNVV 195

Query: 162 ---AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
                ++   +    +VD    E++         +T  G +  ++    + +   +  F 
Sbjct: 196 NVPCIVTLSRIGHRHVVDATLQEEACSVASLLIAVTSKGILTCMRKIG-KGSLDPESIFE 254

Query: 219 MLNLAKDRIADLIKLQKDVISNE 241
           M+   K     L    +  ++ E
Sbjct: 255 MIETGKRVAKSLHTSLQSALNQE 277


>gi|125773865|ref|XP_001358191.1| GA17911 [Drosophila pseudoobscura pseudoobscura]
 gi|54637926|gb|EAL27328.1| GA17911 [Drosophila pseudoobscura pseudoobscura]
          Length = 234

 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 81/234 (34%), Gaps = 31/234 (13%)

Query: 9   NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
           +++RE+          +GS +   G T +++      +V     +    ++   Y     
Sbjct: 13  DKLREMQCKFNPLSRCDGSVMYCQGATVVISAVLGPVEVKTQNLSIDGSYLECNY----- 67

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 + +A   +   R +E    +   L   +   A    ++ +    ++  G     
Sbjct: 68  ------RPKAGLPQVKERIREAA--VRDVLELALLSEAYPRSKMSLQIQELEDRGSIDAC 119

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDV 187
           A+  A +A+                   LK   AA+ C +   G  I+D D  E      
Sbjct: 120 ALNSACLAM-------------LIGGLPLKCSFAAVHCIINEEGDYILDPDQRETENERA 166

Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
              F      G+++ VQ    + +F    F  + +L +   A++++  +  ISN
Sbjct: 167 SFTFAFDSLEGNLLLVQ---TKGSFKIAEFNDVESLCRSASAEILQFYRTSISN 217


>gi|297191697|ref|ZP_06909095.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197721446|gb|EDY65354.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 738

 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 86/250 (34%), Gaps = 30/250 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R ++          GS L + G+T +L   TL     E+    +     
Sbjct: 338 VRIDGRGITDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 397

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  +   R+ G       +  RA+  V+         I    
Sbjct: 398 KRYMHNYNFPPYSVGETGRVGSPKRREIGHG----ALAERAIVPVLPTREEFPYAIRQVS 453

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + + ++G T   ++  + ++L +                 LK  VA I+ G++       
Sbjct: 454 EALGSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLISEQIDGE 500

Query: 173 ----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T +  +  +Q   +          A L  A+D   
Sbjct: 501 THYVALTDILGAEDAFGDMDFKVAGTKTF-VTALQLDTKLDGIPASVLAAALKQARDARL 559

Query: 229 DLIKLQKDVI 238
            ++ +  + I
Sbjct: 560 HILDVMNEAI 569



 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 72/243 (29%), Gaps = 39/243 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      ++K A GS +    D T +L+  T     ++++  +             G 
Sbjct: 20  RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKKPKDQLDFFPLTVDVEERMYAAGK 79

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           QI+     +  D   
Sbjct: 80  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLY 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G +      ++ G  +    + E    
Sbjct: 134 DVVAINAASCSTQLAGL-------------PFSGPIGGTRVALIKGQWVAFPTHTELEDA 180

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
             D              I+ V+  A   T           +++   A L  AK  I  L 
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIELVKGGAEAPTEEVVAAGLEAAKPFIKVLC 240

Query: 232 KLQ 234
           K Q
Sbjct: 241 KAQ 243


>gi|190345706|gb|EDK37633.2| hypothetical protein PGUG_01731 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 312

 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 97/276 (35%), Gaps = 47/276 (17%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R+  +    S+Y  G   +++G+T L    + E   P +      G  T
Sbjct: 30  VRGDGRRIDEIRDPKIILSPSEY--GYVEIEWGNTKLAVRVSAEIAKP-YDDRPFEGIFT 86

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------I 112
               + P ++         +G+       + R++ +A+R    +DL +L          +
Sbjct: 87  INTEISPMASPQ-----FENGKNSDDEVLVSRIVEKAIRRSNALDLESLCIVAGSKVWAV 141

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH-MEDCSNKFQLSQVLKGHVAAISCGML-- 169
             D + +  DGG   A   G  VAL    +  +        +  + +    A+S   +  
Sbjct: 142 RADVNFLDFDGGLIDACALGVMVALQHFRKPDVSIDGESIVVHSMDERQPVALSILHVPL 201

Query: 170 ---------------------CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
                                    ++D  + E+   D      +  +  I++V  S   
Sbjct: 202 CVSFSFFNPSDIEETVKGDASDEIAVMDATHEEELVRDGSLVVTLNKNREILQVSKSG-- 259

Query: 209 ATFSQDHFFAMLNLAKDR---IADLIKLQKDVISNE 241
                D    +++L +      ++L    K+++  +
Sbjct: 260 -GLPIDAVV-LMDLCRKAYTVTSELTDRVKEILKKD 293


>gi|241608403|ref|XP_002405972.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp43, putative
           [Ixodes scapularis]
 gi|215500728|gb|EEC10222.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp43, putative
           [Ixodes scapularis]
          Length = 425

 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 81/255 (31%), Gaps = 31/255 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR     R + L+  + +   G C+   G+T +L   + E  VP   R    G +  
Sbjct: 24  RVDGRTSKDSRALRLSLGLDR---GCCVASLGETKVLAQVSSEVIVPKPNR-PNEGELFV 79

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSR------QII 113
              + P +          +GR G    EI R++ R +R    VDL +L          + 
Sbjct: 80  NLELSPMAAP-----HFEAGRLGDFGVEIARLLERCVRDSHCVDLESLCIVAREKVWSLR 134

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           +D  V+   G     A      AL    +           + D   +  +   L  +   
Sbjct: 135 VDVQVLNHRGNIAECASVATVAALLHFRRPDVTVVGTEVTVHDPREREPVPLHLHHYPYL 194

Query: 164 ISCGMLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           +S          +VD    E+   D      +     I  +          ++       
Sbjct: 195 MSFAFYDEGKTVLVDPSELEERIADGLLTLGVNAHYEICTLH--QRGCIIGKEQVLLCSR 252

Query: 222 LAKDRIADLIKLQKD 236
           LA  R   + +  K+
Sbjct: 253 LACVRAKAITEAIKE 267


>gi|66824935|ref|XP_645822.1| hypothetical protein DDB_G0271100 [Dictyostelium discoideum AX4]
 gi|60473944|gb|EAL71882.1| hypothetical protein DDB_G0271100 [Dictyostelium discoideum AX4]
          Length = 526

 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 82/250 (32%), Gaps = 33/250 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR  N MR I +       + G   V+ G T + T  T +   P   R    G+   
Sbjct: 22  RIDGRGVNDMRAIKIEFG---KSYGVVEVQLGKTRVFTAITCDIVEPKPER-PNEGFYIF 77

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGS------RQII 113
              + P S+ +         +      E+ R+I + L+    +D  AL          I 
Sbjct: 78  NTDISPMSSVS-----VNVNQPNPMESELGRIIEKGLKDSRAIDTEALCIISGSKVWSIK 132

Query: 114 IDCDVIQADGGTRTAAITGAWVALH------------DCLQHMEDCSNKFQLSQVLKGHV 161
           I   V+   G     A      AL             D   H  D      LS  +    
Sbjct: 133 IAIHVLDDCGNLLDCASISVMTALIHFRKPDVTVIGNDATIHSLDEREPVPLS--IHHTP 190

Query: 162 AAISCGMLCGYPI-VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
            +I+ G      + VD D  E+S +D   +F +     I  V       + + D      
Sbjct: 191 ISITFGFFPNEIMIVDPDTKEESVMDGKLSFFVNIHKEICGVSKGG-GTSTTIDQVLKCS 249

Query: 221 NLAKDRIADL 230
            +A  + A++
Sbjct: 250 KIAVIKAAEI 259


>gi|315050464|ref|XP_003174606.1| exosome complex exonuclease RRP45 [Arthroderma gypseum CBS 118893]
 gi|311339921|gb|EFQ99123.1| exosome complex exonuclease RRP45 [Arthroderma gypseum CBS 118893]
          Length = 292

 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 92/261 (35%), Gaps = 30/261 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ +Q+R + LT        GS  V+ G T +L   + E   P   R+   G  T
Sbjct: 23  VRLDGRRFDQLRPVELTFG---EEHGSVKVQLGKTTVLVRISAELTTPRPERDCD-GIFT 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------I 112
               +   +          +GR       + R + + +R  + +D  +L   +      +
Sbjct: 79  VVVELNDMALPGY-----ETGRPSELEVSLSRTLDKIVRRSNALDTESLCISKGMICWNV 133

Query: 113 IIDCDVIQADGGTRTAAITGAWVAL----------HDCLQHMEDCSNKFQLSQVLKGHVA 162
             D  ++  DGG   A+       L           D    +     K  +   L     
Sbjct: 134 RADIHILDCDGGLVDASCLAIMAGLLHFRLPESTVRDGEVTVFTTEEKVPVQLNLTKIPL 193

Query: 163 AISCGMLCGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +++  +       ++D    E++  +      +  +G I  +    + A     +  +  
Sbjct: 194 SVTFNLYDEGKIMLLDATTSEEAVSEGSLVVALDKTGEI-ALYSKPDGAPADPVNMVSSS 252

Query: 221 NLAKDRIADLIKLQKDVISNE 241
            LA +++ +L KL    ++ +
Sbjct: 253 TLALEKVRELNKLLSARLAED 273


>gi|167392099|ref|XP_001740016.1| exosome complex exonuclease RRP42 [Entamoeba dispar SAW760]
 gi|165896056|gb|EDR23596.1| exosome complex exonuclease RRP42, putative [Entamoeba dispar
           SAW760]
          Length = 265

 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 86/264 (32%), Gaps = 42/264 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR   Q REI   + V   A GS  +  G T ++     E   P  I   + G   
Sbjct: 20  IRTDGRANIQFREIKCEKGVIDQANGSVRLCLGKTEVVVGVKCELGEPS-ILTPESG--- 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV---------VDLSALGSRQ 111
             Y +L +  G    R+           EI++MI  +L +          V    L    
Sbjct: 76  -RYNVLVKQVGTMTSRD----------VEIEKMILVSLENAGKDMLQELCVLKGKLC-WI 123

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK---------------FQLSQV 156
           I +D  V++ DG            AL + L  + +  +                F+  + 
Sbjct: 124 IYVDVVVVEDDGNVMDCTGLAVRAALLNTLIPIVNVISGDSDTVQVDIDKDNVQFKKFKP 183

Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
               +  +S        I D    E+     +    +T +G +  +Q       F  +  
Sbjct: 184 ESVPLC-VSLVQFEKEFIADPSKVEEKCNGSEITTAITSNGKVCGIQKGG-NGCFKTEEM 241

Query: 217 FAMLNLAKDRIADLIKLQKDVISN 240
           + M+  A+     L K   +++  
Sbjct: 242 YDMIIQAQMIGLKLFKELDELLEE 265


>gi|298713749|emb|CBJ33722.1| 3'-5'-exoribonuclease/ RNA binding [Ectocarpus siliculosus]
          Length = 174

 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 55/148 (37%), Gaps = 19/148 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEG--SCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           R  GRQ   MR + +   V   AEG  S  ++ G T +L   T E  VP +      G++
Sbjct: 26  RADGRQLGDMRLLRM---VFARAEGQASAEIQLGRTRVLGVVTGEV-VPPFPDRPTEGFL 81

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--Q 111
                + P +  +         R    S EI R+I   +R    +D  AL    G +  Q
Sbjct: 82  HFNVELGPMAAAS-----VGEQRNSPLSVEIARVIEIGVRDSQALDTEALCIIGGEKVWQ 136

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHD 139
           +  D  ++   G    A       AL  
Sbjct: 137 LRCDVHILDHGGNLIDACTLATMAALRH 164


>gi|94733276|emb|CAK04297.1| novel protein similar to mouse and human exosome component 5
           (EXOSC5) [Danio rerio]
          Length = 222

 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 73/230 (31%), Gaps = 29/230 (12%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +RE    + +    +GS     GDT +L       +V   +    +   T E  + P   
Sbjct: 14  LREYGSEQSLLSRPDGSSTFVQGDTSILAGVYGPAEVK--VSKEIYDRATVEVLIQP--- 68

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
                     G    R +  ++ +     + + L+      + +   V+  DG   +  +
Sbjct: 69  --------KMGLPSVRERAREQCVRETCEAALLLTLHPRSSLTVILQVVHDDGSLLSCCL 120

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDA 189
             A +AL D    M                  +++C +   G  I D    ++       
Sbjct: 121 NAACMALMDAGLPMSRL-------------FCSVTCAISKEGQIITDPTARQEKESRALL 167

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            F +  +   V    S+   +FS       + +++     + +  +D + 
Sbjct: 168 TFAIDSNERNVL--MSSTTGSFSVQELQQCIAISQKASEQIFQFYRDSVK 215


>gi|189083688|ref|NP_055819.2| exosome complex component RRP42 [Homo sapiens]
 gi|322510129|sp|Q15024|EXOS7_HUMAN RecName: Full=Exosome complex component RRP42; AltName:
           Full=Exosome component 7; AltName: Full=Ribosomal
           RNA-processing protein 42; AltName: Full=p8
 gi|119585135|gb|EAW64731.1| exosome component 7, isoform CRA_a [Homo sapiens]
 gi|119585136|gb|EAW64732.1| exosome component 7, isoform CRA_a [Homo sapiens]
 gi|119585137|gb|EAW64733.1| exosome component 7, isoform CRA_a [Homo sapiens]
          Length = 291

 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 77/263 (29%), Gaps = 29/263 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R + +   V     GS  VK G T +L     E   P  +     G++ 
Sbjct: 22  LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QI 112
                   +T     R            EI   + R    +S VDL  L          +
Sbjct: 81  FFVDCSASATPEFEGRGG-----DDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ--VLKGHVAAISCGMLC 170
            +D  +++  G    A       AL +            + S+   L           + 
Sbjct: 136 YVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVE 195

Query: 171 GYP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
             P            +VD    E++         +T  G +  ++    + +   +  F 
Sbjct: 196 NVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVG-KGSLDPESIFE 254

Query: 219 MLNLAKDRIADLIKLQKDVISNE 241
           M+   K     L    + V+  E
Sbjct: 255 MMETGKRVGKVLHASLQSVVHKE 277


>gi|3970797|emb|CAA74099.1| polynucleotide phosphorylase [Staphylococcus aureus]
          Length = 277

 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 69/194 (35%), Gaps = 22/194 (11%)

Query: 43  LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV 102
            E ++   +           Y     S G+  +    +G  G R      +  RAL  ++
Sbjct: 11  GEHQIIDGLGVQDSKRFIHHYNFPQFSVGSTGR----AGSPGRREIGHGALGERALAQII 66

Query: 103 DLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA 162
                    I +  +V++++G +  A+I    +AL D                 +K  VA
Sbjct: 67  PSEEDFPYTIRLVAEVLESNGSSSQASICAGTLALMDAGV-------------PIKAPVA 113

Query: 163 AISCGMLCG----YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
            I+ G++        + D+   ED   D+D     T  G I  +Q   +    ++     
Sbjct: 114 GIAMGLVSDGENYTILTDIQGLEDHLGDMDFKVAGTKDG-ITALQMDIKIQGITEQILTE 172

Query: 219 MLNLAKDRIADLIK 232
            L+ AK    ++++
Sbjct: 173 ALDQAKKARMEILE 186


>gi|122920911|pdb|2NN6|E Chain E, Structure Of The Human Rna Exosome Composed Of Rrp41,
           Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
          Length = 305

 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 77/263 (29%), Gaps = 29/263 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R + +   V     GS  VK G T +L     E   P  +     G++ 
Sbjct: 36  LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 94

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QI 112
                   +T     R            EI   + R    +S VDL  L          +
Sbjct: 95  FFVDCSASATPEFEGRGG-----DDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVL 149

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ--VLKGHVAAISCGMLC 170
            +D  +++  G    A       AL +            + S+   L           + 
Sbjct: 150 YVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVE 209

Query: 171 GYP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
             P            +VD    E++         +T  G +  ++    + +   +  F 
Sbjct: 210 NVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVG-KGSLDPESIFE 268

Query: 219 MLNLAKDRIADLIKLQKDVISNE 241
           M+   K     L    + V+  E
Sbjct: 269 MMETGKRVGKVLHASLQSVVHKE 291


>gi|62955139|ref|NP_001017585.1| exosome complex exonuclease RRP42 [Danio rerio]
 gi|62531183|gb|AAH92997.1| Zgc:110717 [Danio rerio]
          Length = 291

 Score = 76.7 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 79/263 (30%), Gaps = 34/263 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR     R + +   V    +GS  +  G T +L     E   P  +     G++ 
Sbjct: 22  LRLDGRGCEDYRHMEIETDVVSNTDGSAKISLGHTDVLVGIKAEIGKPRPMV-PDEGYLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSAL----GSR--QI 112
                   +T     R            E+   + +    R  +DL +L    G     +
Sbjct: 81  FFVDCSANATPEFEGRGGE-----ELGVELSNTLYKVFNNRHSLDLRSLCICPGENCWVL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH------------ 160
            +D  ++Q DG    A       AL +        S   +  + ++              
Sbjct: 136 YVDVLLLQCDGNLFDAISIAIKAALFNTRIPKVHISEDEEGGKEIELSDDPFDCMRLNVE 195

Query: 161 --VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
                ++   +    +VD    E +         +T +G +  V+      +   +  F 
Sbjct: 196 NVPCIVTLCKIGHRHVVDATLQEKACSVASLLIAVTHTGMVTCVRKMG-GGSLDPESIFE 254

Query: 219 MLNLAKDRIADLIK-----LQKD 236
           M    K     L       LQK+
Sbjct: 255 MTEAGKRVGKSLHAPLMDLLQKE 277


>gi|21693160|gb|AAM75154.1| chronic myelogenous leukemia tumor antigen 28 [Homo sapiens]
          Length = 268

 Score = 76.7 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 57/184 (30%), Gaps = 27/184 (14%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R  +  + +    +GS     GDT +L       +V                 +  ++T
Sbjct: 61  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK------------VSKEIFNKAT 108

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
              + R  + G  G   +  +R+I     +VV  +      I +   V+   G      +
Sbjct: 109 LEVILRPKI-GLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCL 167

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDA 189
             A +AL D    M                   ++C +   G  ++D    ++       
Sbjct: 168 NAACMALVDAGVPMRAL-------------FCGVACALDSDGTLVLDPTSKQEKEARAVL 214

Query: 190 NFVM 193
            F +
Sbjct: 215 TFAL 218


>gi|189055112|dbj|BAG38096.1| unnamed protein product [Homo sapiens]
          Length = 291

 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 77/263 (29%), Gaps = 29/263 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R + +   V     GS  VK G T +L     E   P  +     G++ 
Sbjct: 22  LRVDGRGREDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QI 112
                   +T     R            EI   + R    +S VDL  L          +
Sbjct: 81  FFVDCSASATPEFEGRGG-----DDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ--VLKGHVAAISCGMLC 170
            +D  +++  G    A       AL +            + S+   L           + 
Sbjct: 136 YVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVE 195

Query: 171 GYP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
             P            +VD    E++         +T  G +  ++    + +   +  F 
Sbjct: 196 NVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVG-KGSLDPESIFE 254

Query: 219 MLNLAKDRIADLIKLQKDVISNE 241
           M+   K     L    + V+  E
Sbjct: 255 MMETGKRVGKVLHASLQSVVHKE 277


>gi|225710860|gb|ACO11276.1| Exosome complex exonuclease RRP45 [Caligus rogercresseyi]
          Length = 364

 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 81/262 (30%), Gaps = 42/262 (16%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR+ ++ R+I++         G+  V+ GDT +L + +     P  +R    G +  
Sbjct: 20  RLDGRKLDERRDINIHLG---REWGTAEVRLGDTRVLASTSCSVGEPRSVR-PNEGILKT 75

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRS-QEIQRMIGRALRS--VVDLSALGSRQ------I 112
                                    +  E+ R+I R L+    VD+ +L          I
Sbjct: 76  HIE------------PLSKRSISTETLVELNRVIERVLKESKCVDMESLCISSEEKVWII 123

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV----------LKGHVA 162
            ++  ++   G     A      AL    +                        +  H  
Sbjct: 124 SLEMTLLNDAGNAADCASIAGLAALCHFKRPDVTLKGDKIRIHPFYERDPVSLAIHHHPV 183

Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
             +  +     ++D    E+  +D      M     I  +  + ++          +L L
Sbjct: 184 LSTFALYGRVALLDPSKEEEIVMDGKVVLGMNPYREICALHLAGQKLV----DKTLVLQL 239

Query: 223 AKDRIAD---LIKLQKDVISNE 241
           A     +   ++   K+ +S +
Sbjct: 240 ASKAAEESKRIVDQLKNALSRD 261


>gi|325182492|emb|CCA16947.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 251

 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 78/253 (30%), Gaps = 53/253 (20%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  N++R+IS  +     A+GS  + FGDT +L       +              
Sbjct: 5   LRDDGRNCNELRQISSEQGTLHRADGSSNLTFGDTTVLVAVYGPGQAK-----------I 53

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           A   ++ ++  +   R    G    + +E++ ++ R    ++         I I   +I+
Sbjct: 54  ARNELVDKAAIDVCVR-LNQGIAAAKEKEMELIVRRLYEPIIQRQEFPRTVISIVIQIIE 112

Query: 121 ADGGT-------------------------RTAAITGAWVALHDCLQHMEDCSNKFQLSQ 155
             G                            +A I    +AL D    M           
Sbjct: 113 DAGSISSLLTSHTIGFGSCVEFLDRLCLYLVSAVINAVTMALMDAEIAMLGVV------- 165

Query: 156 VLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVE--VQGSAERATFSQ 213
                 +   C    G  ++D    E+   +  +  +   S  + E  V   +     S+
Sbjct: 166 -----TSTTCCLTEDGSVLLDPSQKEE--AECISLVICASSFQLAEGGVLFLSSEGPLSE 218

Query: 214 DHFFAMLNLAKDR 226
           +  F+     K  
Sbjct: 219 EQLFSCAEACKRG 231


>gi|46203340|ref|ZP_00051652.2| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Magnetospirillum magnetotacticum MS-1]
          Length = 386

 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 78/210 (37%), Gaps = 18/210 (8%)

Query: 21  SKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
              A GS L+   +T  L  ATL    +E++   +           Y   P S G   + 
Sbjct: 1   MPRAHGSALLSLVETQALLFATLGTGQDEQISDHLAGEYREHFMLHYNCPPYSVGEAGR- 59

Query: 77  EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVA 136
               G  G R     ++  RA+R  +         + +  ++ +++G +  A + G+ +A
Sbjct: 60  ---MGSPGRREIGHGKLAWRAMRPTLPTKESFPYTMRVVSEITESNGSSSMATVCGSSLA 116

Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
           + D    +        +  + +G+  A+         + D+   ED   D+D     T  
Sbjct: 117 MMDAGVPLPKPVAGIAMGLIKEGNDFAV---------LSDILGDEDHLGDMDFKVAGTVD 167

Query: 197 GHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           G +  +Q   +  + +++     L  AKD 
Sbjct: 168 G-VTALQMDIKITSITEEIMKIALGQAKDG 196


>gi|27262520|gb|AAN87541.1| Polyribonucleotide nucleotidyltransferase [Heliobacillus mobilis]
          Length = 445

 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 84/233 (36%), Gaps = 27/233 (11%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLP 67
            +++    V+K A GS + ++GDT +L+TAT        +  +     +       G +P
Sbjct: 33  NLTVETGRVAKQAGGSVMARYGDTVVLSTATASKEPRPGIDFFPLTVDYEERLYAVGKIP 92

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G  +KRE   GR   ++    R+I R +R +         Q++     +  D     
Sbjct: 93  ---GGFIKRE---GRPTEKAILSSRLIDRPIRPLFPKGFRNDVQVVSTVLSVDQDCPPDI 146

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
             + GA  AL                    +G +  +  G + G  I++    E    D+
Sbjct: 147 VGMIGASCALC-------------LSDVPFEGPIGGVVVGRVDGKLIINPRMEEAEKSDM 193

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 T    ++ V+  A      ++     +      I  +++ Q++++  
Sbjct: 194 HLVVAGTKDA-VMMVEAGANEIP--EEDMIEAIMFGHQEIQRIVQFQEEMMKT 243



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 8/108 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN----TKHG 57
           R  GR+ +++R I++   +     GS L   G T +L   TL     + I +     +  
Sbjct: 332 RPDGRKVDEIRPITVEVGILPRTHGSALFTRGQTQVLNVCTLGTISDLQILDGLGVEESK 391

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105
                Y     S G          R+ G       +  RAL  V+   
Sbjct: 392 RYMHHYNFPSYSVGETRPMRGPGRREIGHG----ALAERALLPVIPSE 435


>gi|321475502|gb|EFX86465.1| hypothetical protein DAPPUDRAFT_222073 [Daphnia pulex]
          Length = 290

 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 75/247 (30%), Gaps = 29/247 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR     R I L   +   A GS  ++  ++ +L    +E   P+     + G + 
Sbjct: 22  LRCDGRTRLDYRPIILETGLVSNASGSARLRLANSDILVGVKVELASPL-PDKPQEGRLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------I 112
                   +T     R          + EI R + R+  S   ++LS L          +
Sbjct: 81  FFVDCSANATPEFEGRGGED-----LANEICRFLQRSYASGDTINLSELSVLTGQQCWVL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH------------ 160
            +D  +++  G    A       AL+         +        L+              
Sbjct: 136 YVDILILECGGNLYDAVSLAVKSALYATQIPSIKVATMDGDQPELELSDDPYDTKRLNTE 195

Query: 161 --VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
                ++   +  + +VD    E+          ++ +  I  V+      +   D   +
Sbjct: 196 NIPCVVTLMKIGNHYLVDPTPEEECCSSSGIVVAVSGNKKITAVRKIG-SGSLHPDSLVS 254

Query: 219 MLNLAKD 225
           ML    +
Sbjct: 255 MLKTGSE 261


>gi|189441917|gb|AAI67726.1| LOC100170617 protein [Xenopus (Silurana) tropicalis]
          Length = 226

 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 69/231 (29%), Gaps = 31/231 (13%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +RE    + +    +GS     GDT ++                    I     +  ++T
Sbjct: 19  LREYGCEQSLLSRPDGSATFLQGDTSVMAGVYGP------------AEIKVSREIHNKAT 66

Query: 71  GNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
              + R          ++QE  ++I     SV+  S      I I   ++   G   +  
Sbjct: 67  LEVILRPKTGLPAIQEKNQE--QLIRETCESVIIGSLHPRTSITIVLQIVSDAGSLLSCC 124

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVD 188
           +  A + L D    M                   ++C M   G   +D ++ +       
Sbjct: 125 LNAACMGLMDAGLPMRAL-------------FCGVTCAMDNDGTITLDPNFRQQKESRAV 171

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
             F +  +   V     + R  +S       +  A+     L +  +D I 
Sbjct: 172 LTFAIESTERKVL--MMSNRGVYSATELQQCIAAAQIASEKLFQFYRDFIR 220


>gi|332215753|ref|XP_003257009.1| PREDICTED: exosome complex exonuclease RRP42-like [Nomascus
           leucogenys]
 gi|332215755|ref|XP_003257010.1| PREDICTED: exosome complex exonuclease RRP42-like [Nomascus
           leucogenys]
          Length = 291

 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 77/263 (29%), Gaps = 29/263 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R + +   V     GS  VK G T +L     E   P  +     G++ 
Sbjct: 22  LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QI 112
                   +T     R            EI   + R    +S VDL  L          +
Sbjct: 81  FFVDCSASATPEFEGRGG-----DDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ--VLKGHVAAISCGMLC 170
            +D  +++  G    A       AL +            + S+   L           + 
Sbjct: 136 YVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVE 195

Query: 171 GYP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
             P            +VD    E++         +T  G +  ++    + +   +  F 
Sbjct: 196 NVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVG-KGSLDPESIFE 254

Query: 219 MLNLAKDRIADLIKLQKDVISNE 241
           M+   K     L    + ++  E
Sbjct: 255 MMETGKRVGKVLHASLQSLLHKE 277


>gi|164661143|ref|XP_001731694.1| hypothetical protein MGL_0962 [Malassezia globosa CBS 7966]
 gi|159105595|gb|EDP44480.1| hypothetical protein MGL_0962 [Malassezia globosa CBS 7966]
          Length = 182

 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 54/154 (35%), Gaps = 16/154 (10%)

Query: 88  QEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDC 147
            E    +   L  V+        Q+ I   V Q DGG   A I    +AL D    M D 
Sbjct: 31  VEWANAVRSTLEPVIHTHLYPRSQVDIVLYVEQQDGGVLPAMINACTLALMDAGIPMSD- 89

Query: 148 SNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207
                       +V A++CG+     ++DL+  E S +      ++  +G +  +Q    
Sbjct: 90  ------------YVTAMTCGLHGSTAMLDLNLTEQSDLPFVTVAILPRTGTVPLIQLDTR 137

Query: 208 RATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
                 D F AM+++  D    L       +   
Sbjct: 138 ---MHMDRFAAMVHVCVDAARVLRDELDSAVRGR 168


>gi|290957009|ref|YP_003488191.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Streptomyces scabiei 87.22]
 gi|260646535|emb|CBG69632.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Streptomyces scabiei 87.22]
          Length = 741

 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 85/250 (34%), Gaps = 30/250 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R ++          GS L + G+T +L   TL     E+    +     
Sbjct: 340 VRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 399

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  +   R+ G       +  RA+  V+         I    
Sbjct: 400 KRYMHNYNFPPYSVGETGRVGSPKRREIGHG----ALAERAIVPVLPTREEFPYAIRQVS 455

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + + ++G T   ++  + ++L +                 LK  VA I+ G++       
Sbjct: 456 EALGSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLISQEINGE 502

Query: 173 ----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T    +  +Q   +          A L  A+D   
Sbjct: 503 THYVALTDILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARL 561

Query: 229 DLIKLQKDVI 238
            ++ +  + I
Sbjct: 562 HILDVMMEAI 571



 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 82/252 (32%), Gaps = 44/252 (17%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      +++ A GS +    D T +L+  T     ++++  +             G 
Sbjct: 22  RTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGK 81

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q++     +  D   
Sbjct: 82  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLY 135

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G +  +   ++    +    + E    
Sbjct: 136 DVVAINAASASTQLAGL-------------PFSGPIGGVRVALINNQWVAFPTHTELEDA 182

Query: 186 ------------DVDANFVMTD----SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
                       D D   +M +       I  VQG AE    +++   A L+ AK  I  
Sbjct: 183 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVQGGAEAP--TEEVVAAGLDAAKPFIKV 240

Query: 230 LIKLQKDVISNE 241
           L K Q D ++++
Sbjct: 241 LCKAQAD-LASK 251


>gi|297277133|ref|XP_001102687.2| PREDICTED: exosome complex exonuclease RRP46 [Macaca mulatta]
          Length = 277

 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 57/184 (30%), Gaps = 27/184 (14%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R  +  + +    +GS     GDT +L       +V                 +  ++T
Sbjct: 70  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK------------VSKEIFNKAT 117

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
              + R  + G  G   +  +R+I     +VV  +      I +   V+   G      +
Sbjct: 118 LEVILRPKI-GLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCL 176

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDA 189
             A +AL D    M                   ++C +   G  ++D    ++       
Sbjct: 177 NAACMALVDAGVPMRAL-------------FCGVTCALDSDGTLVLDPTSKQEKEARAVL 223

Query: 190 NFVM 193
            F +
Sbjct: 224 TFAL 227


>gi|29829065|ref|NP_823699.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           avermitilis MA-4680]
 gi|81720032|sp|Q82K80|PNP_STRAW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|29606171|dbj|BAC70234.1| putative guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Streptomyces avermitilis
           MA-4680]
          Length = 738

 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 85/250 (34%), Gaps = 30/250 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R ++          GS L + G+T +L   TL     E+    +     
Sbjct: 338 VRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 397

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  +   R+ G       +  RA+  V+         I    
Sbjct: 398 KRYMHNYNFPPYSVGETGRVGSPKRREIGHG----ALAERAIVPVLPTREEFPYAIRQVS 453

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + + ++G T   ++  + ++L +                 LK  VA I+ G++       
Sbjct: 454 EALGSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLISQEINGE 500

Query: 173 ----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T    +  +Q   +          A L  A+D   
Sbjct: 501 THYVALTDILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARL 559

Query: 229 DLIKLQKDVI 238
            ++ +  + I
Sbjct: 560 HILDVMMEAI 569



 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 70/239 (29%), Gaps = 39/239 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      ++K A GS +    D T +L+  T     +E +  +             G 
Sbjct: 20  RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKKPKENLDFFPLTVDVEERMYAAGK 79

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q++     +  D   
Sbjct: 80  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLY 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G +  +   ++ G  +    + E    
Sbjct: 134 DVVAINAASASTQLAGL-------------PFSGPIGGVRVALINGQWVAFPTHTELEDA 180

Query: 186 DVDANF-----------VMTDSGHIVE--VQGSAERATFSQDHFFAM-LNLAKDRIADL 230
             D              +M       E  +Q  A  A    +   A  L+ AK  I  L
Sbjct: 181 VFDMVVAGRALEDGDVAIMMVEAEATEKTIQLVAGGAEAPTEEVVAAGLDAAKPFIKVL 239


>gi|302558058|ref|ZP_07310400.1| polyribonucleotide nucleotidyltransferase [Streptomyces
           griseoflavus Tu4000]
 gi|302475676|gb|EFL38769.1| polyribonucleotide nucleotidyltransferase [Streptomyces
           griseoflavus Tu4000]
          Length = 747

 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 84/249 (33%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R ++          GS L + G+T +L   TL     E+    +      
Sbjct: 339 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRK 398

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RA+  V+         I    +
Sbjct: 399 RYMHNYNFPPYSVGETGRVGSPKRREIGHG----ALAERAIVPVLPTREEFPYAIRQVSE 454

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
            + ++G T   ++  + ++L +                 LK  VA I+ G++        
Sbjct: 455 ALGSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLISQEINGET 501

Query: 173 ---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    +  +Q   +          A L  A+D    
Sbjct: 502 HYVALTDILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLH 560

Query: 230 LIKLQKDVI 238
           ++ +  + I
Sbjct: 561 ILDVMMEAI 569



 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 71/239 (29%), Gaps = 39/239 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      +++ A GS +    D T +L+  +     ++++  +             G 
Sbjct: 20  RTIRFETGRLARQAAGSAVAYLDDDTMVLSATSASKNPKDQLDFFPLTVDVEERMYAAGK 79

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q++     +  D   
Sbjct: 80  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLY 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G +  +   ++ G  +    + E    
Sbjct: 134 DVVAINAASASTQLAGL-------------PFSGPIGGVRVALINGQWVAFPTHTELEDA 180

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADL 230
             D              I+ V+  A   T           +++   A L  AK  I  L
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATEKTVKLVEGGAEAPTEEVVAAGLEAAKPFIKVL 239


>gi|189067465|dbj|BAG37447.1| unnamed protein product [Homo sapiens]
          Length = 235

 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 60/193 (31%), Gaps = 30/193 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR    +R  +  + +    +GS     GDT +L       +V              
Sbjct: 22  RGPGRS---LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK------------V 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
              +  ++T   + R  + G  G   +  +R+I     +VV  +      I +   V+  
Sbjct: 67  SKEIFNKATLEVILRPKI-GLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVPQVVSD 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYG 180
            G      +  A +AL D    M                   ++C +   G  ++D    
Sbjct: 126 AGSLLACCLNAACMALVDAGVPMRAL-------------FCGVACALDSDGTLVLDPTSK 172

Query: 181 EDSTIDVDANFVM 193
           ++        F +
Sbjct: 173 QEKEARAVLTFAL 185


>gi|194874459|ref|XP_001973402.1| GG13362 [Drosophila erecta]
 gi|190655185|gb|EDV52428.1| GG13362 [Drosophila erecta]
          Length = 319

 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 8/139 (5%)

Query: 10  QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWITAEYGMLPR 68
           + R   +   V     GS  +++G+T +L      ++ +    R    G +         
Sbjct: 46  EPRNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELLRASARRMNMGVLNCYVNFAAF 105

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
           ++G+             R + +  M+ +A+  VV  +   + Q+ I   ++  DG   + 
Sbjct: 106 ASGD-------LDSVTERERHLSGMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLST 158

Query: 129 AITGAWVALHDCLQHMEDC 147
           AI    VAL +C     D 
Sbjct: 159 AINCCGVALVECGISTYDL 177


>gi|167382557|ref|XP_001736162.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165901601|gb|EDR27679.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 227

 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 87/235 (37%), Gaps = 34/235 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---W 58
           R  GR+ N++R  ++   V   A+GSCL++  ++ ++++          I+         
Sbjct: 7   RGDGREANEIRATTIKIGVISGAKGSCLIQKENSKVISSV--------QIKTQDESIDFE 58

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
            T +              E  S     +  E+Q ++ ++L S ++  +   + I +   V
Sbjct: 59  FTVKVTFAQF--------ENNSLFNNRKEIELQEILTQSLTSRINQESNKGKIICLQVFV 110

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ++ DG    + I  + +AL D    M+   +    + V+K  +            IVD  
Sbjct: 111 MEQDGSVEDSIINSSSLALFDAEIQMD---SIIIATTVVKLPIY--------NQVIVDPT 159

Query: 179 -YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + E+          +  +  I ++  S            + L++A D    L K
Sbjct: 160 AFEEEKKEGSVLIACIPSNSSITQIYMSG---VLDPQDISSCLSIALDSCWKLNK 211


>gi|213983243|ref|NP_001135527.1| hypothetical protein LOC100216070 [Xenopus (Silurana) tropicalis]
 gi|156229972|gb|AAI52124.1| Zgc:110717 protein [Danio rerio]
 gi|195539973|gb|AAI67984.1| Unknown (protein for MGC:180975) [Xenopus (Silurana) tropicalis]
          Length = 291

 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 79/263 (30%), Gaps = 34/263 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR     R + +   V    +GS  +  G T +L     E   P  +     G++ 
Sbjct: 22  LRLDGRGCEDYRHMEIETDVVSNTDGSAKISLGHTDVLVGIKAEIGKPRPMV-PNEGYLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSAL----GSR--QI 112
                   +T     R            E+   + +    R  +DL +L    G     +
Sbjct: 81  FFVDCSANATPEFEGRGGE-----ELGVELSNTLYKVFNNRHSLDLRSLCICPGENCWVL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH------------ 160
            +D  ++Q DG    A       AL +        S   +  + ++              
Sbjct: 136 YVDVLLLQCDGNLFDAISIAIKAALFNTRIPKVHISEDEEGGKEIELSDDPFDCMRLNVE 195

Query: 161 --VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
                ++   +    +VD    E +         +T +G +  V+      +   +  F 
Sbjct: 196 NVPCIVTLCKIGHRHVVDATLQEKACSVASLLIAVTHTGMVTCVRKMG-GGSLDPESIFE 254

Query: 219 MLNLAKDRIADLIK-----LQKD 236
           M    K     L       LQK+
Sbjct: 255 MTEAGKRVGKSLHAPLMDLLQKE 277


>gi|146420206|ref|XP_001486060.1| hypothetical protein PGUG_01731 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 312

 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 96/276 (34%), Gaps = 47/276 (17%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ +++R+  +    S+Y  G   +++G+T  L    L E    +      G  T
Sbjct: 30  VRGDGRRIDEIRDPKIILSPSEY--GYVEIEWGNTK-LAVRVLAEIAKPYDDRPFEGIFT 86

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------I 112
               + P ++         +G+       + R++ +A+R    +DL +L          +
Sbjct: 87  INTEISPMASPQ-----FENGKNSDDEVLVSRIVEKAIRRSNALDLESLCIVAGSKVWAV 141

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH-MEDCSNKFQLSQVLKGHVAAISCGML-- 169
             D + +  DGG   A   G  VAL    +  +        +  + +    A+S   +  
Sbjct: 142 RADVNFLDFDGGLIDACALGVMVALQHFRKPDVSIDGESIVVHSMDERQPVALSILHVPL 201

Query: 170 ---------------------CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
                                    ++D  + E+   D      +  +  I++V  S   
Sbjct: 202 CVSFSFFNPSDIEETVKGDASDEIAVMDATHEEELVRDGSLVVTLNKNREILQVSKSG-- 259

Query: 209 ATFSQDHFFAMLNLAKDR---IADLIKLQKDVISNE 241
                D    +++L +      ++L    K+++  +
Sbjct: 260 -GLPIDAVV-LMDLCRKAYTVTSELTDRVKEILKKD 293


>gi|68533900|gb|AAH99290.1| LOC733302 protein [Xenopus laevis]
          Length = 224

 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 68/231 (29%), Gaps = 31/231 (13%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +RE    + +    +GS     GDT +L                    I     +  ++T
Sbjct: 17  LREYGCEQSLLSRPDGSATFLQGDTSVLAGVYGP------------AEIKVSREIHNKAT 64

Query: 71  GNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
              + R          ++ E  ++I     SV+  S      I I   +I   G   +  
Sbjct: 65  LEVILRPKTGLPAIQEKNHE--QLIRETCESVIIGSLHPRTSITIVLQIISDAGSLLSCC 122

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVD 188
           +  A + L D    M                   ++C +   G   +D +  +       
Sbjct: 123 LNAACMGLMDAGLPMRSL-------------FCGVTCALDNDGNITLDPNDRQQKESRAV 169

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
             F +  +   V    ++ R  +S       +  A+     L +  +D I 
Sbjct: 170 VTFAIESTERKVL--MTSSRGLYSAAELQQCIAAAQLASEKLFQFYRDFIR 218


>gi|291448178|ref|ZP_06587568.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           roseosporus NRRL 15998]
 gi|291351125|gb|EFE78029.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           roseosporus NRRL 15998]
          Length = 742

 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 81/242 (33%), Gaps = 14/242 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R ++          GS L + G+T +L   TL     E+    +     
Sbjct: 343 VRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 402

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  +   R+ G       +  RA+  V+         I    
Sbjct: 403 KRYMHNYNFPPYSVGETGRVGSPKRREIGHG----ALAERAIVPVLPTREEFPYAIRQVS 458

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  + ++L +    ++       +  + +               + D
Sbjct: 459 EALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIAMGLISQEIDGKTHYV-----ALTD 513

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    +  +Q   +          A L  A+D    ++ +  +
Sbjct: 514 ILGAEDAFGDMDFKVAGTKQF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMNE 572

Query: 237 VI 238
            I
Sbjct: 573 AI 574



 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 79/250 (31%), Gaps = 40/250 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLL--TTATLEEK--VPMWIRNTKHGWITAEYGM 65
           R I      ++K A GS +    D T +L  TTA+   K  +  +             G 
Sbjct: 25  RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDNLDFFPLTVDVEERQYAAGK 84

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR     S     QI+     +  D   
Sbjct: 85  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKSLRNEIQIVETVMALNPDHLY 138

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G + A    ++ G  +    + E    
Sbjct: 139 DVVAINAASCSTQLAGL-------------PFSGPIGATRVALIKGQWVAFPTHTELEDA 185

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
             D              I+ V+  A   T           +++   A L  AK  I  L 
Sbjct: 186 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEIVAAGLEAAKPFIKTLC 245

Query: 232 KLQKDVISNE 241
           K Q D ++++
Sbjct: 246 KAQSD-LASK 254


>gi|293192221|ref|ZP_06609390.1| polyribonucleotide nucleotidyltransferase [Actinomyces
           odontolyticus F0309]
 gi|292820337|gb|EFF79330.1| polyribonucleotide nucleotidyltransferase [Actinomyces
           odontolyticus F0309]
          Length = 781

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 80/250 (32%), Gaps = 30/250 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR   Q+R +S    V     GS L + G+T +L   TL     E+    +     
Sbjct: 344 IRMDGRTPRQIRSLSAEVEVLPRVHGSALFQRGETQILGITTLAMLRMEQQIDNLSPVNA 403

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 404 KRYMHQYNFAPFSTGEVGRVGSPKRREIGHG----DLAERALVPVLPSREEFPYAI---- 455

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
                    R  + T                 +  Q    L+  VA I+ G++ G     
Sbjct: 456 ---------RQVSETMGSNGSSSMGSVCASTLSLLQAGVPLRAPVAGIAMGLMTGEVDGQ 506

Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED   D+D     T    I  +Q   +          A L  A+D   
Sbjct: 507 FKAVTLTDILGAEDGFGDMDFKVAGTRDF-ITALQLDTKLDGIDSQVLRAALAQARDARL 565

Query: 229 DLIKLQKDVI 238
            ++ L    I
Sbjct: 566 AILDLINQAI 575



 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 78/241 (32%), Gaps = 25/241 (10%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTATL----EEKVPMWIRNTKHGWITAEYGM 65
           R +      ++K A GS L    D T +L+  T+    +++   +             G 
Sbjct: 22  RTVRFETGRLAKQAAGSALAYLDDSTTVLSATTVGKNPKDQFDFFPLTVDVEERQYAAGR 81

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR G  +    R+I R LR           Q++     I  D   
Sbjct: 82  IP---GSFFRRE---GRAGTEAILAARLIDRPLRPGFVKGLRNEVQVVETVLTIDPDDAY 135

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA---------AISCGMLCGYPIVD 176
              AI  A ++               +L+ +    VA         ++   ++ G  +  
Sbjct: 136 DVLAINAASMSTQIAGLPFTGPIGGTRLALIDDQWVAFPRWSELERSVFNIVVAGRIVTK 195

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            D  ED    +              +Q  A     ++D     L  AK  I  L + Q  
Sbjct: 196 EDGSEDVA--IMMVEAGGGKNQWELIQAGATAP--TEDVVADGLEAAKPFIKVLCEAQLK 251

Query: 237 V 237
           V
Sbjct: 252 V 252


>gi|239944720|ref|ZP_04696657.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           roseosporus NRRL 15998]
          Length = 737

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 81/242 (33%), Gaps = 14/242 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R ++          GS L + G+T +L   TL     E+    +     
Sbjct: 338 VRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 397

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  +   R+ G       +  RA+  V+         I    
Sbjct: 398 KRYMHNYNFPPYSVGETGRVGSPKRREIGHG----ALAERAIVPVLPTREEFPYAIRQVS 453

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  + ++L +    ++       +  + +               + D
Sbjct: 454 EALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIAMGLISQEIDGKTHYV-----ALTD 508

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    +  +Q   +          A L  A+D    ++ +  +
Sbjct: 509 ILGAEDAFGDMDFKVAGTKQF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMNE 567

Query: 237 VI 238
            I
Sbjct: 568 AI 569



 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 79/250 (31%), Gaps = 40/250 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLL--TTATLEEK--VPMWIRNTKHGWITAEYGM 65
           R I      ++K A GS +    D T +L  TTA+   K  +  +             G 
Sbjct: 20  RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDNLDFFPLTVDVEERQYAAGK 79

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR     S     QI+     +  D   
Sbjct: 80  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKSLRNEIQIVETVMALNPDHLY 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G + A    ++ G  +    + E    
Sbjct: 134 DVVAINAASCSTQLAGL-------------PFSGPIGATRVALIKGQWVAFPTHTELEDA 180

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
             D              I+ V+  A   T           +++   A L  AK  I  L 
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEIVAAGLEAAKPFIKTLC 240

Query: 232 KLQKDVISNE 241
           K Q D ++++
Sbjct: 241 KAQSD-LASK 249


>gi|239991184|ref|ZP_04711848.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           roseosporus NRRL 11379]
          Length = 737

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 81/242 (33%), Gaps = 14/242 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R ++          GS L + G+T +L   TL     E+    +     
Sbjct: 338 VRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 397

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  +   R+ G       +  RA+  V+         I    
Sbjct: 398 KRYMHNYNFPPYSVGETGRVGSPKRREIGHG----ALAERAIVPVLPTREEFPYAIRQVS 453

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  + ++L +    ++       +  + +               + D
Sbjct: 454 EALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIAMGLISQEIDGKTHYV-----ALTD 508

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    +  +Q   +          A L  A+D    ++ +  +
Sbjct: 509 ILGAEDAFGDMDFKVAGTKQF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMNE 567

Query: 237 VI 238
            I
Sbjct: 568 AI 569



 Score = 62.0 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 77/250 (30%), Gaps = 40/250 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      ++K A GS +    D T +L+  T     ++ +  +             G 
Sbjct: 20  RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDNLDFFPLTVDVEERQYAAGK 79

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           QI+     +  D   
Sbjct: 80  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETVMALNPDHLY 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G + A    ++ G  +    + E    
Sbjct: 134 DVVAINAASCSTQLAGL-------------PFSGPIGATRVALIKGQWVAFPTHTELEDA 180

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
             D              I+ V+  A   T           +++   A L  AK  I  L 
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEIVAAGLEAAKPFIKTLC 240

Query: 232 KLQKDVISNE 241
           K Q D ++++
Sbjct: 241 KAQSD-LASK 249


>gi|195379528|ref|XP_002048530.1| GJ11305 [Drosophila virilis]
 gi|194155688|gb|EDW70872.1| GJ11305 [Drosophila virilis]
          Length = 423

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 73/206 (35%), Gaps = 31/206 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R  GR+ N+ R++ LT      A+ G+  V  G+T +L   + +   P   R    G + 
Sbjct: 29  RFDGRKSNEFRDVKLTFG----ADWGTVAVSIGETKVLAQVSCDIGTPSSAR-ANEGTLF 83

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALG---SRQII-- 113
               +   +  +             R   +  ++ R  +S   +DL +L     + +   
Sbjct: 84  LNVDIKGVAFLDE-----AQATHDQRFLTLNSLLERTFKSSRCLDLESLCIAVEQSVWCV 138

Query: 114 -IDCDVIQADGGTRTAAITGAWVALHDCLQHME----------DCSNKFQLSQVLKGHVA 162
            +D +V+  DG    A+   A  AL    +                 +  L  +   +  
Sbjct: 139 RVDINVLNHDGNLYDASTIAALAALMHFRRPEVSYVEEEIRTFSERERELLPLLFLHYPV 198

Query: 163 AISCGMLC--GYPIVDLDYGEDSTID 186
           +++  +      P+VD    E++  D
Sbjct: 199 SVTYCVYKSSSQPLVDPTLLEENAAD 224


>gi|182435576|ref|YP_001823295.1| polynucleotide phosphorylase/polyadenylase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326776210|ref|ZP_08235475.1| Polyribonucleotide nucleotidyltransferase [Streptomyces cf. griseus
           XylebKG-1]
 gi|226702691|sp|B1VXZ6|PNP_STRGG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|178464092|dbj|BAG18612.1| putative guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase alpha chain [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326656543|gb|EGE41389.1| Polyribonucleotide nucleotidyltransferase [Streptomyces cf. griseus
           XylebKG-1]
          Length = 737

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 81/242 (33%), Gaps = 14/242 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R ++          GS L + G+T +L   TL     E+    +     
Sbjct: 338 VRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 397

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  +   R+ G       +  RA+  V+         I    
Sbjct: 398 KRYMHNYNFPPYSVGETGRVGSPKRREIGHG----ALAERAIVPVLPTREEFPYAIRQVS 453

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  + ++L +    ++       +  + +               + D
Sbjct: 454 EALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIAMGLISQEIDGKTHYV-----ALTD 508

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    +  +Q   +          A L  A+D    ++ +  +
Sbjct: 509 ILGAEDAFGDMDFKVAGTKQF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMNE 567

Query: 237 VI 238
            I
Sbjct: 568 AI 569



 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 78/250 (31%), Gaps = 40/250 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      ++K A GS +    D T +L+  T     ++ +  +             G 
Sbjct: 20  RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDNLDFFPLTVDVEERQYAAGK 79

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           QI+     +  D   
Sbjct: 80  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLY 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G + A    ++ G  +    + E    
Sbjct: 134 DVVAINAASCSTILAGL-------------PFSGPIGATRVALIKGQWVAFPTHTELEDA 180

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
             D              I+ V+  A   T           +++   A L+ AK  I  L 
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEIVAAGLDAAKPFIKALC 240

Query: 232 KLQKDVISNE 241
           K Q D ++++
Sbjct: 241 KAQSD-LASK 249


>gi|187469539|gb|AAI67023.1| Exosc5 protein [Rattus norvegicus]
          Length = 233

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 64/206 (31%), Gaps = 29/206 (14%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R  +  + +    +GS     GDT +L       +V                 +  ++T
Sbjct: 26  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK------------VSKEIFNKAT 73

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
              + R  + G  G   +  +R+I     +VV  +      I +   V+   G      +
Sbjct: 74  LEVILRPKI-GLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDTGSLLACCL 132

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYGEDSTIDVDA 189
             A +AL D    M                   ++C +   G  ++D    ++       
Sbjct: 133 NAACMALVDAGVPMRAL-------------FCGVTCALDPDGNLVLDPTTKQEKEARAIL 179

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDH 215
            F +  +   +    SA +  +S   
Sbjct: 180 TFALDSAEQKLL--MSATKGLYSDAE 203


>gi|154509089|ref|ZP_02044731.1| hypothetical protein ACTODO_01606 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798723|gb|EDN81143.1| hypothetical protein ACTODO_01606 [Actinomyces odontolyticus ATCC
           17982]
          Length = 781

 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 80/250 (32%), Gaps = 30/250 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR   Q+R +S    V     GS L + G+T +L   TL     E+    +     
Sbjct: 344 IRMDGRTPRQIRSLSAEVEVLPRVHGSALFQRGETQILGVTTLAMLRMEQQIDNLSPVNA 403

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 404 KRYMHQYNFAPFSTGEVGRVGSPKRREIGHG----DLAERALVPVLPSREDFPYAI---- 455

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
                    R  + T                 +  Q    L+  VA I+ G++ G     
Sbjct: 456 ---------RQVSETMGSNGSSSMGSVCASTLSLLQAGVPLRAPVAGIAMGLMTGEVDGQ 506

Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED   D+D     T    I  +Q   +          A L  A+D   
Sbjct: 507 FKAVTLTDILGAEDGFGDMDFKVAGTRDF-ITALQLDTKLDGIDSQVLRAALAQARDARL 565

Query: 229 DLIKLQKDVI 238
            ++ L    I
Sbjct: 566 AILDLINQAI 575



 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 78/241 (32%), Gaps = 25/241 (10%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTATL----EEKVPMWIRNTKHGWITAEYGM 65
           R +      ++K A GS L    D T +L+  T+    +++   +             G 
Sbjct: 22  RTVRFETGRLAKQAAGSALAYLDDSTTVLSATTVGKNPKDQFDFFPLTVDVEERQYAAGR 81

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR G  +    R+I R LR           Q++     I  D   
Sbjct: 82  IP---GSFFRRE---GRAGTEAILAARLIDRPLRPGFVKGLRNEVQVVETVLTIDPDDAY 135

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA---------AISCGMLCGYPIVD 176
              AI  A ++               +L+ +    VA         ++   ++ G  +  
Sbjct: 136 DVLAINAASMSTQIAGLPFTGPIGGTRLALIDDQWVAFPRWSELERSVFNIVVAGRIVTK 195

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            D  ED    +              +Q  A     ++D     L  AK  I  L + Q  
Sbjct: 196 EDGSEDVA--IMMVEAGGGKNQWELIQAGATAP--TEDIVADGLEAAKPFIKVLCEAQLK 251

Query: 237 V 237
           V
Sbjct: 252 V 252


>gi|308481633|ref|XP_003103021.1| CRE-EXOS-4.2 protein [Caenorhabditis remanei]
 gi|308260397|gb|EFP04350.1| CRE-EXOS-4.2 protein [Caenorhabditis remanei]
          Length = 273

 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 61/189 (32%), Gaps = 31/189 (16%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R     R + +   V    +GS   +FG+T +L   T  E    W        IT +   
Sbjct: 64  RSATAFRPLCVKCGVFGAQDGSGYAEFGNTRVLAQITGPEGDGKWEEAYAKVTITLK--- 120

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
                G   + +    R    S         +L +V+ ++    + I I+  V+  DGG 
Sbjct: 121 -----GVENETKVAELRADMTS---------SLSAVIFVNKYPGKVIDIEVTVLSDDGGV 166

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL--DYGEDS 183
            + AIT   +AL          +             +A       G  I D      ED+
Sbjct: 167 LSTAITAVTLALAHSGIEHMGLTA------------SAHVTLRQNGDYITDPSTSEAEDA 214

Query: 184 TIDVDANFV 192
              V   FV
Sbjct: 215 IGGVTFAFV 223


>gi|32141272|ref|NP_733673.1| polynucleotide phosphorylase/polyadenylase [Streptomyces coelicolor
           A3(2)]
 gi|256784838|ref|ZP_05523269.1| polynucleotide phosphorylase/polyadenylase [Streptomyces lividans
           TK24]
 gi|289768731|ref|ZP_06528109.1| polyribonucleotide nucleotidyltransferase [Streptomyces lividans
           TK24]
 gi|81445833|sp|Q8CJQ6|PNP_STRCO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|24413893|emb|CAD55364.1| guanosine pentaphosphate synthetase/polyribonucleotide
           nucleotidyltransferase [Streptomyces coelicolor A3(2)]
 gi|289698930|gb|EFD66359.1| polyribonucleotide nucleotidyltransferase [Streptomyces lividans
           TK24]
          Length = 739

 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 84/249 (33%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R ++          GS L + G+T +L   TL     E+    +      
Sbjct: 339 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRK 398

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RA+  V+         I    +
Sbjct: 399 RYMHNYNFPPYSVGETGRVGSPKRREIGHG----ALAERAIVPVLPTREEFPYAIRQVSE 454

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
            + ++G T   ++  + ++L +                 LK  VA I+ G++        
Sbjct: 455 ALGSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLISQEINGET 501

Query: 173 ---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    +  +Q   +          A L  A+D    
Sbjct: 502 HYVALTDILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLH 560

Query: 230 LIKLQKDVI 238
           ++ +  + I
Sbjct: 561 ILDVMMEAI 569



 Score = 58.2 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 76/241 (31%), Gaps = 43/241 (17%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      +++ A GS +    D T +L+  +     ++++  +             G 
Sbjct: 20  RTIRFETGRLARQAAGSAVAYLDDDTMVLSATSASKNPKDQLDFFPLTVDVEERMYAAGK 79

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q++     +  D   
Sbjct: 80  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLY 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G +  +   ++ G  +    + E    
Sbjct: 134 DVVAINAASASTQLAGL-------------PFSGPIGGVRVALIRGQWVAFPTHTELEDA 180

Query: 186 ------------DVDANFVMTD----SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
                       D D   +M +       I  V+G AE    +++   A L+ AK  I  
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATDKTIKLVEGGAEAP--TEEVVAAGLDAAKPFIKV 238

Query: 230 L 230
           L
Sbjct: 239 L 239


>gi|56970613|gb|AAH88546.1| LOC496941 protein [Xenopus (Silurana) tropicalis]
          Length = 289

 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 81/263 (30%), Gaps = 29/263 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR     R I +   V     GS  VK G T +L     E   P  +     G++ 
Sbjct: 20  LRTDGRGCEDYRCIEVETDVVSNTTGSARVKIGHTDVLVGVKAEMGTPK-LERAGEGYLE 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSRQ------I 112
                   +T     R            EI  M+ +    RS +DL +L  ++      +
Sbjct: 79  FFVDCSANATPEFEGRGGE-----ELGAEIAFMLYKIFDNRSSIDLESLCIQEREHCWVL 133

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDC------SNKFQLSQVLKGHV----- 161
            +D  +++  G            AL +                 F+LS      V     
Sbjct: 134 YVDVLLLECGGNLFDTISVAVKAALFNARIPKVRILEDDEGGKDFELSDDPYDCVRLNVV 193

Query: 162 ---AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
                ++   +    +VD    E++         +T  G +  ++    + +   +  F 
Sbjct: 194 NVPCIVTLSRIGHRHVVDATLQEEACSVASLLIAVTSKGILTCMRKIG-KGSLDPESIFE 252

Query: 219 MLNLAKDRIADLIKLQKDVISNE 241
           M+   K     L    +  ++ E
Sbjct: 253 MIETGKRVAKSLHTSLQSALNQE 275


>gi|321262921|ref|XP_003196179.1| hypothetical Protein CGB_I2130C [Cryptococcus gattii WM276]
 gi|317462654|gb|ADV24392.1| conserved hypothetical protein [Cryptococcus gattii WM276]
          Length = 299

 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 46/311 (14%), Positives = 79/311 (25%), Gaps = 103/311 (33%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   Q+R + L+      A+GS    FG   +L + +   +V +            
Sbjct: 9   RPDGRTPAQLRPLHLSIGELDRADGSARFAFGSNAVLASCSGPIEVRLREELPDK----- 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR----SVVDLSALGSRQIIIDCD 117
                  +T     R               R +   L      V+ L       + +   
Sbjct: 64  -------ATFEVNHRPLEGVGATP-----SRALVTTLETIFPPVLSLEKHPRSLVQLVVQ 111

Query: 118 VI----------------------------QAD-------------------GGTRTA-- 128
            +                              D                   G T TA  
Sbjct: 112 SLMPSTCRAVYGSVIGTEGVGAEQNTWPATDNDEYAYVPESKRDAARISPAAGYTFTARA 171

Query: 129 -AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            +I  + +AL                  +L   VA        G  ++D +  E+     
Sbjct: 172 ASINASTLALLSAGTI-----------SILALPVAVALVVTTEGSMMLDPEADEEKQAKA 220

Query: 188 DAN--------FVMTDSGHIVEVQGSAERAT----------FSQDHFFAMLNL---AKDR 226
                      F     G+ +EV G +E             F++  +   L +   A   
Sbjct: 221 RFGFGWAWGAIFGTASEGNSMEVAGQSEGGAELVWVESEGNFTRQEWSEALEMSKTATKA 280

Query: 227 IADLIKLQKDV 237
           I + I++Q D 
Sbjct: 281 ILEFIRIQLDA 291


>gi|312596907|ref|NP_001100963.2| exosome complex exonuclease RRP46 [Rattus norvegicus]
          Length = 235

 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 64/206 (31%), Gaps = 29/206 (14%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R  +  + +    +GS     GDT +L       +V                 +  ++T
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK------------VSKEIFNKAT 75

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
              + R  + G  G   +  +R+I     +VV  +      I +   V+   G      +
Sbjct: 76  LEVILRPKI-GLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDTGSLLACCL 134

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYGEDSTIDVDA 189
             A +AL D    M                   ++C +   G  ++D    ++       
Sbjct: 135 NAACMALVDAGVPMRAL-------------FCGVTCALDPDGNLVLDPTTKQEKEARAIL 181

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDH 215
            F +  +   +    SA +  +S   
Sbjct: 182 TFALDSAEQKLL--MSATKGLYSDAE 205


>gi|11514054|pdb|1E3P|A Chain A, Tungstate Derivative Of Streptomyces Antibioticus Pnpase
           Gpsi Enzyme
          Length = 757

 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 84/249 (33%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R+ GR    +R ++          GS L + G+T +L   TL     E+    +      
Sbjct: 356 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRK 415

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RA+  V+         I    +
Sbjct: 416 RYMHNYNFPPYSVGETGRVGSPKRREIGHG----ALAERAIVPVLPTREEFPYAIRQVSE 471

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
            + ++G T   ++  + ++L +                 LK  VA I+ G++        
Sbjct: 472 ALGSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLISQEINGET 518

Query: 173 ---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D+D     T    +  +Q   +          A L  A+D    
Sbjct: 519 HYVALTDILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLH 577

Query: 230 LIKLQKDVI 238
           ++ +  + I
Sbjct: 578 ILDVMMEAI 586



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 72/239 (30%), Gaps = 39/239 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      +++ A GS +    D T +L+  T     ++++  +             G 
Sbjct: 37  RTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGK 96

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q++     +  D   
Sbjct: 97  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLY 150

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G +  +   ++ G  +    + E    
Sbjct: 151 DVVAINAASASTQLAGL-------------PFSGPIGGVRVALIRGQWVAFPTHTELEDA 197

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADL 230
             D              I+ V+  A   T           +++   A L+ AK  I  L
Sbjct: 198 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLDAAKPFIKVL 256


>gi|194221417|ref|XP_001496279.2| PREDICTED: similar to Exosome complex exonuclease RRP42 (Ribosomal
           RNA-processing protein 42) (Exosome component 7) (p8)
           [Equus caballus]
          Length = 535

 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 73/247 (29%), Gaps = 29/247 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R + +   V     GS  VK G T +L     E   P  +     G++ 
Sbjct: 22  LRVDGRGCEDYRCVDVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QI 112
                   +T     R            EI   + R    +S VDL +L          +
Sbjct: 81  FFVDCSANATPEFEGRGG-----DDLGTEIANTLYRIFNNKSSVDLKSLCISPREHCWIL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ--VLKGHVAAISCGMLC 170
            +D  +++  G    A       AL +            + S+   L           + 
Sbjct: 136 YVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVE 195

Query: 171 GYP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
             P            +VD    E++         +T  G +  ++    + +   +  F 
Sbjct: 196 NVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVG-KGSLDPESIFE 254

Query: 219 MLNLAKD 225
           M+   K 
Sbjct: 255 MMETGKR 261


>gi|82524833|ref|NP_001032342.1| exosome component 7 [Xenopus (Silurana) tropicalis]
 gi|89267936|emb|CAJ82816.1| exosome component 7 [Xenopus (Silurana) tropicalis]
          Length = 291

 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 81/263 (30%), Gaps = 29/263 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR     R I +   V     GS  VK G T +L     E   P  +     G++ 
Sbjct: 22  LRTDGRGCEDYRCIEVETDVVSNTTGSARVKIGHTDVLVGVKAEMGTPK-LERAGEGYLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSRQ------I 112
                   +T     R            EI  M+ +    RS +DL +L  ++      +
Sbjct: 81  FFVDCSANATPEFEGRGGE-----ELGAEIAFMLYKIFDNRSSIDLESLCIQEREHCWVL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDC------SNKFQLSQVLKGHV----- 161
            +D  +++  G            AL +                 F+LS      V     
Sbjct: 136 YVDVLLLECGGNLFDTISVAVKAALFNARIPKVRILEDDEGGKDFELSDDPYDCVRLNVV 195

Query: 162 ---AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
                ++   +    +VD    E++         +T  G +  ++    + +   +  F 
Sbjct: 196 NVPCIVTLSRIGHRHVVDATLQEEACSVASLLIAVTSKGILTCMRKIG-KGSLDPESIFE 254

Query: 219 MLNLAKDRIADLIKLQKDVISNE 241
           M+   K     L    +  ++ E
Sbjct: 255 MIETGKRVAKSLHTSLQSALNQE 277


>gi|315604465|ref|ZP_07879531.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315314171|gb|EFU62222.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 780

 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 80/250 (32%), Gaps = 30/250 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR   Q+R +S    V     GS L + G+T +L   TL     E+    +     
Sbjct: 344 IRMDGRTPRQIRSLSAEVEVLPRVHGSALFQRGETQILGVTTLAMLRMEQQIDNLSPVNS 403

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 404 KRYMHQYNFAPFSTGEVGRVGSPKRREIGHG----DLAERALLPVLPSREDFPYAI---- 455

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
                    R  + T                 +  Q    L+  VA I+ G++ G     
Sbjct: 456 ---------RQVSETMGSNGSSSMGSVCASTLSLLQAGVPLRAPVAGIAMGLMTGEVDGQ 506

Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED   D+D     T    I  +Q   +          A L  A+D   
Sbjct: 507 AKAVTLTDILGAEDGFGDMDFKVAGTRDF-ITALQLDTKLDGIDSQVLRAALAQARDARL 565

Query: 229 DLIKLQKDVI 238
            ++ L    I
Sbjct: 566 AILDLISQAI 575



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 78/241 (32%), Gaps = 25/241 (10%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTATL----EEKVPMWIRNTKHGWITAEYGM 65
           R +      ++K A GS L    D T +L+  T+    +++   +             G 
Sbjct: 22  RTVRFETGRLAKQAAGSALAYLDDATTVLSATTVGKNPKDQFDFFPLTVDVEERQYAAGR 81

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR G  +    R+I R LR           Q++     I  D   
Sbjct: 82  IP---GSFFRRE---GRAGTEAILAARLIDRPLRPGFVKGLRNEVQVVETVLTIDPDDAY 135

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVA---------AISCGMLCGYPIVD 176
              AI  A ++               +L+ +    VA         ++   ++ G  +  
Sbjct: 136 DVLAINAASMSTQIAGLPFTGPIGGTRLALIDDQWVAFPRWSELERSVFNIVVAGRIVTK 195

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            D  ED    +              +Q  A     ++D     L  AK  I  L + Q  
Sbjct: 196 EDGTEDVA--IMMVEAGGGKNEWDLIQAGATAP--TEDVVADGLEAAKPFIKALCEAQMK 251

Query: 237 V 237
           V
Sbjct: 252 V 252


>gi|254382116|ref|ZP_04997478.1| polynucleotide phosphorylase/polyadenylase [Streptomyces sp. Mg1]
 gi|194341023|gb|EDX21989.1| polynucleotide phosphorylase/polyadenylase [Streptomyces sp. Mg1]
          Length = 745

 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 85/250 (34%), Gaps = 30/250 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R ++          GS L + G+T +L   TL     E+    +     
Sbjct: 343 VRIDGRGITDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 402

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  +   R+ G       +  RA+  V+         I    
Sbjct: 403 KRYMHNYNFPPYSVGETGRVGSPKRREIGHG----ALAERAIVPVLPTREEFPYAIRQVS 458

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + + ++G T   ++  + ++L +                 LK  VA I+ G++       
Sbjct: 459 EALGSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLISQEIDGK 505

Query: 173 ----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T    +  +Q   +          A L  A+D   
Sbjct: 506 THYVALTDILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARL 564

Query: 229 DLIKLQKDVI 238
            ++ +  + I
Sbjct: 565 HILDVMMEAI 574



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 72/239 (30%), Gaps = 39/239 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      +++ A GS +    D T +L+  T     ++++  +             G 
Sbjct: 25  RTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKKPKDQLDFFPLTVDVEERQYAAGK 84

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q++     +  D   
Sbjct: 85  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLY 138

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G +  +   ++ G  +    + E    
Sbjct: 139 DVVAINAASASTQLAGL-------------PFSGPIGGVRVALIRGQWVAFPTHTELEDA 185

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADL 230
             D              I+ V+  A   T           +++   A L+ AK  I  L
Sbjct: 186 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIALVKGGAEAPTEEIVAAGLDAAKPFIKVL 244


>gi|254393066|ref|ZP_05008227.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294815456|ref|ZP_06774099.1| Polyribonucleotide nucleotidyltransferase [Streptomyces
           clavuligerus ATCC 27064]
 gi|326443808|ref|ZP_08218542.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           clavuligerus ATCC 27064]
 gi|197706714|gb|EDY52526.1| polynucleotide phosphorylase/polyadenylase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294328055|gb|EFG09698.1| Polyribonucleotide nucleotidyltransferase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 739

 Score = 75.5 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 85/250 (34%), Gaps = 30/250 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R ++          GS L + G+T +L   TL     E+    +     
Sbjct: 338 VRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 397

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  +   R+ G       +  RA+  V+         I    
Sbjct: 398 KRYMHNYNFPPYSVGETGRVGSPKRREIGHG----ALAERAIVPVLPSREEFPYAIRQVS 453

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + + ++G T   ++  + ++L +                 LK  VA I+ G++       
Sbjct: 454 EALGSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLISQEIDGK 500

Query: 173 ----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T    +  +Q   +          A L  A+D   
Sbjct: 501 THYVALTDILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARL 559

Query: 229 DLIKLQKDVI 238
            ++ +  + I
Sbjct: 560 HILDVMMEAI 569



 Score = 61.6 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 72/243 (29%), Gaps = 39/243 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      ++K A GS +    D T +L+  T     ++++  +             G 
Sbjct: 20  RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKKPKDQLDFFPLTVDVEERMYAAGK 79

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           QI+     +  D   
Sbjct: 80  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLY 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G +      ++ G  +    + E    
Sbjct: 134 DVVAINAASCSTQLAGL-------------PFSGPIGGTRVALIKGQWVAFPTHTELEDA 180

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
             D              I+ V+  A   T           +++   A L  AK  I  L 
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATEKTVQLVKDGAEAPTEEVVAAGLEAAKPFIKVLC 240

Query: 232 KLQ 234
           K Q
Sbjct: 241 KAQ 243


>gi|291393541|ref|XP_002713440.1| PREDICTED: exosome component 7 [Oryctolagus cuniculus]
          Length = 290

 Score = 75.5 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 73/246 (29%), Gaps = 28/246 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R + +   V     GS  VK G T +L     E   P  +     G++ 
Sbjct: 22  LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPDEGYVE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL-RSVVDLSALGSR------QII 113
                   +T     R            EI   + R   +  +DL +L          + 
Sbjct: 81  FFVDCSANATPEFEGRGG-----DDLGTEIANTLARIFNKGSLDLKSLCISPREHCWVLY 135

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ--VLKGHVAAISCGMLCG 171
           +D  +++  G    A       AL +            + S+   L           +  
Sbjct: 136 VDVLLLECGGNLFDAISIAVKAALFNTRIPRVHVLEDEEGSKEIELSDDPYDCIQLSVEN 195

Query: 172 YP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
            P            +VD    E++         +T+ G +  ++    + +   +  F M
Sbjct: 196 VPCIITLCKIGYRHVVDATLQEEACSLASLLVSVTNKGVVTCMRKVG-KGSLDPESIFEM 254

Query: 220 LNLAKD 225
           +   + 
Sbjct: 255 METGER 260


>gi|328773489|gb|EGF83526.1| hypothetical protein BATDEDRAFT_9008 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 285

 Score = 75.5 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 82/250 (32%), Gaps = 24/250 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR     R   L       A GS  VK GDT ++     E   P        G++ 
Sbjct: 38  VRADGRPLLHFRNTELDFGPITSASGSVSVKVGDTSVICAIKAELAEPA-PTLPYQGYLV 96

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL---GSRQIII- 114
               +               G     +Q I   +   + S  V+DL +L     + + + 
Sbjct: 97  PNVDLPALCAS-----HFRPGPPCELAQSISTFLNNIISSGNVLDLESLCVVPGKVVWVL 151

Query: 115 --DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF------QLSQVLKGHVAAISC 166
             D   +   G    A++     AL +        S++         ++ LK +   IS 
Sbjct: 152 YADIVCLNYAGNIFDASVDALIAALCNVKLPEVTISDESAPVINNLPAKPLKLNRILISS 211

Query: 167 --GMLCGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
              +  G  ++ D  + E+  +      V+ D   I  +       + ++      L LA
Sbjct: 212 TFAIFDGQTLLADPTHEEEPLVSSTVTIVVDDKDCICAIHKPG-GVSITKAVIDECLTLA 270

Query: 224 KDRIADLIKL 233
           K R    +KL
Sbjct: 271 KSRTPSFMKL 280


>gi|67476142|ref|XP_653674.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
 gi|56470674|gb|EAL48311.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
          Length = 265

 Score = 75.5 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 86/264 (32%), Gaps = 42/264 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR   Q REI   + V   A GS  +  G T ++     E   P  +   + G   
Sbjct: 20  IRTDGRANIQFREIKCEKGVIDQANGSVRLCLGKTEVVVGVKCELGEPSVL-TPESG--- 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV---------VDLSALGSRQ 111
             Y +L +  G    R+           EI++MI  +L +          V    L    
Sbjct: 76  -RYNVLVKQVGTMTSRD----------VEIEKMILVSLENAGKDMLQELCVLKGKLC-WI 123

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK---------------FQLSQV 156
           I +D  V++ DG            AL + L  + +  +                F+  + 
Sbjct: 124 IYVDVVVVEDDGNVMDCTGLAVRAALLNTLIPIVNVISGDSDTVQVDIDKDNVQFKKFKP 183

Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
               +  +S        I D    E+     +    +T +G +  +Q       F  +  
Sbjct: 184 ESVPLC-VSLIQFEKEFIADPSKVEEKCNGSEITTAITSNGKVCGIQKGG-NGCFKTEEM 241

Query: 217 FAMLNLAKDRIADLIKLQKDVISN 240
           + M+  A+     L K   +++  
Sbjct: 242 YDMIIQAQMIGLKLFKELDELLEE 265


>gi|226372666|gb|ACO51958.1| Exosome complex exonuclease RRP42 [Rana catesbeiana]
          Length = 291

 Score = 75.5 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 76/263 (28%), Gaps = 29/263 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR     R I L   V     GS  VK G T +L     E   P  +     G++ 
Sbjct: 22  LRTDGRGCEDYRWIELETDVVSNTTGSARVKIGHTDVLVGVKAEMSTPK-LDRPCEGYLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGS------RQI 112
                   +T     R            EI  M+ +    +S +DL +L          +
Sbjct: 81  FFVDCSANATPEFEGRGGE-----ELGTEIANMLYKVFDNKSSIDLESLCILPREHCWTL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS--NKFQLSQVLKGHVAAISCGMLC 170
            ID  ++   G        G   AL +           +       L           + 
Sbjct: 136 YIDVLLLHCGGSLFDTISIGVKAALFNTRIPKVSVLEDDGGNKEIELSDDPYDCMRLNVE 195

Query: 171 GYP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
             P            +VD    E++         +   G +  ++    + +   +  F 
Sbjct: 196 NVPCIITLCKIGHRHVVDATLQEEACSLASVLVAINIKGTLTCMRKMG-KGSLDPECIFE 254

Query: 219 MLNLAKDRIADLIKLQKDVISNE 241
           M+   K     L    ++V++ E
Sbjct: 255 MIETGKRVAKSLHLSLRNVLNQE 277


>gi|283458493|ref|YP_003363120.1| polyribonucleotide nucleotidyltransferase [Rothia mucilaginosa
           DY-18]
 gi|283134535|dbj|BAI65300.1| polyribonucleotide nucleotidyltransferase [Rothia mucilaginosa
           DY-18]
          Length = 739

 Score = 75.5 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 87/245 (35%), Gaps = 30/245 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R+++    +     GS L + G+T ++   TL     E+    +   K 
Sbjct: 347 VRIDGRGLTDIRQLTAEVEILPRVHGSALFERGETQIMGITTLNMLKMEQQLDSLHPVKS 406

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RA+  V+         I    
Sbjct: 407 KRYIHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERAITPVLPSREEFPYAIRQVS 462

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
           + + ++G T   ++  + ++L +                 L+  VA I+ G++       
Sbjct: 463 EALGSNGSTSMGSVCASTLSLLNAGV-------------PLRAPVAGIAMGLVSDEVDGE 509

Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T    +  +Q   +            L  A++   
Sbjct: 510 TRYAALTDILGAEDALGDMDFKVAGTSEF-VTAIQLDTKLDGIPASVLAGALTQAREARL 568

Query: 229 DLIKL 233
            ++++
Sbjct: 569 HILEV 573



 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 75/250 (30%), Gaps = 44/250 (17%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLL-TTA---TLEEKVPMWIRNTKHGWITAEYGM 65
           R +      ++K A GS LV   D T LL  T    +  +    +             G 
Sbjct: 21  RHVRFETGRLAKQANGSVLVTIDDETTLLSATVVGKSPRDGFDFFPLTVDVEERMYAAGK 80

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P S     +RE   GR    +    R+I R LR           Q+++       D   
Sbjct: 81  IPASY---FRRE---GRPSTEAILAARLIDRPLRPAFTKGIRNEVQVVVTVLTYNPDEIY 134

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
            T AI  A  +                      G +  +   ++ G  +    Y +    
Sbjct: 135 NTFAINAASASTTLSGA-------------PFSGPIGGVRMALIDGQWVCFPKYSQLENA 181

Query: 186 DVDANFV--------MTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDR 226
             D             T+   I+ V+  A   ++           +++     L  AK  
Sbjct: 182 VFDMAVAGRIVTKADGTEDVAIMMVEAEATDNSWKLIKEDGQTAPTEEVVAQGLEAAKPF 241

Query: 227 IADLIKLQKD 236
           IA L K Q D
Sbjct: 242 IAALCKAQAD 251


>gi|115608225|ref|XP_793149.2| PREDICTED: similar to Exosome component 5, partial
           [Strongylocentrotus purpuratus]
 gi|115608377|ref|XP_001181744.1| PREDICTED: similar to Exosome component 5, partial
           [Strongylocentrotus purpuratus]
          Length = 185

 Score = 75.5 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 64/209 (30%), Gaps = 27/209 (12%)

Query: 34  DTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRM 93
           DT ++        V           +T  Y                 G  G R + ++RM
Sbjct: 1   DTSVMAAVYGPGDVKPNKALMDKATVTVTYK-------------PKIGISGVREKALERM 47

Query: 94  IGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL 153
           I     +V+  +      + I    IQ  G     +I  A +A+ +    M+        
Sbjct: 48  IRNTCETVLLTTLFPRSSVDIIVQEIQDAGALLACSINAACLAMINAGIPMKCTVA---- 103

Query: 154 SQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
                   A+          I+D    +    +      +  S H   +  S+ + + S 
Sbjct: 104 --------ASCCMMGKDEELIMDPTKEQTKDAECVLTSAIDSSAH--SLIASSMQGSCSV 153

Query: 214 DHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           + +  ++++ +     + +  ++ +   +
Sbjct: 154 EQYHKLMSVCQKACDKVFEFYREAMERTL 182


>gi|169621181|ref|XP_001804001.1| hypothetical protein SNOG_13798 [Phaeosphaeria nodorum SN15]
 gi|160704198|gb|EAT78822.2| hypothetical protein SNOG_13798 [Phaeosphaeria nodorum SN15]
          Length = 292

 Score = 75.1 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 89/258 (34%), Gaps = 33/258 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWI 59
           +RL GR  +  R++ LT    +Y  G   V+ G T ++   +++   P    +      I
Sbjct: 23  IRLDGRAFDAFRKVELTFG-EEY--GVADVQLGKTRVVARISIDVTTPLPERKFDGVFQI 79

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGS------RQ 111
             E+   P ++          GR       + R++ +A+R  + +D  +L          
Sbjct: 80  VTEFS--PMASPA-----FEIGRPTDAEVILSRILEKAIRRSNALDTESLCIIAGLKCFA 132

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHD------------CLQHMEDCSNKFQLSQVLKG 159
           +  D  VI  DGG   A+      AL                       +   LS + + 
Sbjct: 133 LRADVHVIDHDGGLIDASCIAVMAALQHFRRPDVLVEGEKATVLSVRERDPIPLSILHQP 192

Query: 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
                S        +VD +  E+     +    M   G I ++      AT +       
Sbjct: 193 LCVTFSYFAEGELFLVDANLAEEQVRQGEITITMNKHGEICQIAKYG-GATVNPLAMLQC 251

Query: 220 LNLAKDRIADLIK-LQKD 236
            N+A  ++ ++ K +Q+ 
Sbjct: 252 TNVALQKVKEMSKFIQQK 269


>gi|195476691|ref|XP_002086206.1| GE23007 [Drosophila yakuba]
 gi|194185996|gb|EDW99607.1| GE23007 [Drosophila yakuba]
          Length = 328

 Score = 75.1 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 8/137 (5%)

Query: 12  REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWITAEYGMLPRST 70
           R   +   V     GS  +++G+T +L      +++     R    G +         +T
Sbjct: 48  RNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFAT 107

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+             R + +  M+ +A+  VV  +   + Q+ I   ++  DG   + AI
Sbjct: 108 GDLDSVP-------ERERHLGSMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAI 160

Query: 131 TGAWVALHDCLQHMEDC 147
               VAL +C     D 
Sbjct: 161 NCCGVALVECGISTYDL 177


>gi|148236233|ref|NP_001086766.1| exosome component 7 [Xenopus laevis]
 gi|50418038|gb|AAH77415.1| Exosc7-prov protein [Xenopus laevis]
          Length = 291

 Score = 75.1 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 81/267 (30%), Gaps = 37/267 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-- 58
           +R  GR     R I +   V     GS  VK G T +L     E   P  +     G+  
Sbjct: 22  LRTDGRGCEDYRCIEVESDVVSNTTGSARVKIGHTDVLVGVKAEMGTPK-LERPGEGYLE 80

Query: 59  --ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR---- 110
             +       P         E           EI  M+ +    RS +DL +L  +    
Sbjct: 81  FFVDCSANAAP---------EFEGRGGEELGTEIAFMLYKIFDNRSSIDLESLCIQAREH 131

Query: 111 --QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM------EDCSNKFQLSQVLKGHV- 161
              + +D  +++  G            AL +           E+    F+LS      V 
Sbjct: 132 CWVLYVDVLLLECGGNLFDTISVAVKAALFNARIPKVRVLEDEEGGKDFELSDDPYDCVR 191

Query: 162 -------AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
                    ++   +    +VD    E++         +T  G +  ++    + +   +
Sbjct: 192 LNVVNVPCIVTLSRIGHRHVVDATLQEEACSVASLLISVTSKGILTCMRKIG-KGSLDPE 250

Query: 215 HFFAMLNLAKDRIADLIKLQKDVISNE 241
             F M+   K     L    +  ++ E
Sbjct: 251 SIFEMIETGKHVAKSLHTSLQSALNQE 277


>gi|301754007|ref|XP_002912799.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex exonuclease
           RRP42-like [Ailuropoda melanoleuca]
          Length = 459

 Score = 75.1 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 78/262 (29%), Gaps = 28/262 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R + +   V     GS  VK G T +L     E   P  +     G++ 
Sbjct: 22  LRVDGRGCEDYRYVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL-RSVVDLSALGSR------QII 113
                   +T     R            EI   + R   +S VDL +L          + 
Sbjct: 81  FFVDCSANATPEFEGRGG-----DDLGTEIANTLYRIFNKSSVDLKSLCISPREHCWILY 135

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ--VLKGHVAAISCGMLCG 171
           +D  +++  G            AL +            + S+   L           +  
Sbjct: 136 VDVLLLECGGNLFDTICIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVEN 195

Query: 172 YP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
            P            +VD    E++         +T +G +  ++    + +   +  F M
Sbjct: 196 VPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSTGVVTCMRKVG-KGSLDPESVFEM 254

Query: 220 LNLAKDRIADLIKLQKDVISNE 241
           +   K     L    + V+  E
Sbjct: 255 METGKRVGKVLHASLQSVLHKE 276


>gi|225709084|gb|ACO10388.1| Exosome complex exonuclease RRP42 [Caligus rogercresseyi]
          Length = 288

 Score = 75.1 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 72/248 (29%), Gaps = 39/248 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPMWIRNTKHGW 58
           +R+ GRQ   +R + L   V  +A GS  ++  +T +L     E  E  P  +      +
Sbjct: 22  LRVDGRQRKDVRPMILETDVITHANGSARIRLANTDVLVGVKAELCEDRPGGLEF----Y 77

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG------RALRSVVD--LSALGSR 110
           +       P         E         + EI   +       R     V        + 
Sbjct: 78  VDCSANASP---------EFEGRGGEDLALEISSTLASSYSDPRVFDPSVLHVFKNRYAW 128

Query: 111 QIIIDCDVIQADGGTR-TAAITGAWVALHDCLQHME-------DCSNKFQLSQV------ 156
            + +D  +++ +GG     +      AL                                
Sbjct: 129 VLHVDVLILEVEGGNLFDVSSLAVKSALFCTQVPRVHIVDVDGGVPEIELSEDPEECFRL 188

Query: 157 -LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
            + G    +S   +  + IVD    E++         +T SG I  ++      +F  D 
Sbjct: 189 NVSGAPVLVSLNRVGHFVIVDASPHEEACSSAAIVVAVTPSGRISSLRKVG-SGSFHIDT 247

Query: 216 FFAMLNLA 223
               L  A
Sbjct: 248 LEDALATA 255


>gi|193664372|ref|XP_001942983.1| PREDICTED: exosome complex exonuclease RRP43-like [Acyrthosiphon
           pisum]
          Length = 267

 Score = 75.1 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 80/254 (31%), Gaps = 27/254 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+    R+ SL       A+GS +VK G+T ++     E  VP        G++  
Sbjct: 22  RNDGRELMNFRDASLNLNTIHTADGSAVVKIGNTAVVCGIKAELGVPK-AEAPDIGYLLV 80

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSALGSRQ---III-- 114
              +    +     ++   G     + ++   +     +   +DL  L       + I  
Sbjct: 81  NIELPSLCS-----KKIRPGIPCDEAMQMTSFLNEVCNNCKILDLQQLCISVDKLVWILS 135

Query: 115 -DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV--------AAIS 165
            D   +  DG    A +     AL            + + + V++ ++         + +
Sbjct: 136 CDIYCLNYDGSVLDACLIALLSALQTVKIPEVKYDKETEETTVIENYIPLKVNSLPVSST 195

Query: 166 CGMLCGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD-HFFAMLNLA 223
            G+     I+ D    E+         V   S              F +D      +  A
Sbjct: 196 FGVFNEKYILADPTEEEEQLCVSKLTVVTNGSLIFSL---HKPGGEFIKDSQIQNCIKHA 252

Query: 224 KDRIADLIKLQKDV 237
            +R   + +L K  
Sbjct: 253 NNRAKTICQLIKAA 266


>gi|195496098|ref|XP_002095549.1| GE22455 [Drosophila yakuba]
 gi|194181650|gb|EDW95261.1| GE22455 [Drosophila yakuba]
          Length = 328

 Score = 75.1 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 8/137 (5%)

Query: 12  REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWITAEYGMLPRST 70
           R   +   V     GS  +++G+T +L      +++     R    G +         +T
Sbjct: 48  RNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFAT 107

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+             R + +  M+ +A+  VV  +   + Q+ I   ++  DG   + AI
Sbjct: 108 GDLDSVP-------ERERHLGSMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAI 160

Query: 131 TGAWVALHDCLQHMEDC 147
               VAL +C     D 
Sbjct: 161 NCCGVALVECGISTYDL 177


>gi|75349253|sp|Q53597|PNP_STRAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
           Full=Polynucleotide phosphorylase; Short=PNPase
 gi|642066|gb|AAB17498.1| guanosine pentaphosphate synthetase [Streptomyces antibioticus]
          Length = 740

 Score = 75.1 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 85/250 (34%), Gaps = 32/250 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR    +R ++          GS L + G+T +L   T    + M  +      +T 
Sbjct: 339 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQIL-GVTTLNMLRMEQQLDTLSPVTR 397

Query: 61  ----AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  +   R+ G       +  RA+  V+         I    
Sbjct: 398 KPYMHNYNFPPISVGETGRVGSPKRREIGHG----ALAERAIVPVLPTREEFPYAIRQVS 453

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + + ++G T   ++  + ++L +                 LK  VA I+ G++       
Sbjct: 454 EALGSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLISQEINGE 500

Query: 173 ----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T    +  +Q   +          A L  A+D   
Sbjct: 501 THYVALTDILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARL 559

Query: 229 DLIKLQKDVI 238
            ++ +  + I
Sbjct: 560 HILDVMMEAI 569



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 71/239 (29%), Gaps = 39/239 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      ++K A GS +    D T +L+  T     ++++  +             G 
Sbjct: 20  RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGK 79

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q++     +  D   
Sbjct: 80  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLY 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G    +   ++ G  +    + E    
Sbjct: 134 DVVAINAASASTQLAGL-------------PFSGPYGGVRVALIRGQWVAFPTHTELEDA 180

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADL 230
             D              I+ V+  A   T           +++   A L+ AK  I  L
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATEKTVQLVKDGAEAPTEEVVAAGLDAAKPFIKVL 239


>gi|302537281|ref|ZP_07289623.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. C]
 gi|302446176|gb|EFL17992.1| polyribonucleotide nucleotidyltransferase [Streptomyces sp. C]
          Length = 739

 Score = 75.1 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 85/250 (34%), Gaps = 30/250 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R ++          GS L + G+T +L   TL     E+    +     
Sbjct: 338 VRIDGRGLTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 397

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  +   R+ G       +  RA+  V+         I    
Sbjct: 398 KRYMHNYNFPPYSVGETGRVGSPKRREIGHG----ALAERAIVPVLPTREEFPYAIRQVS 453

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           + + ++G T   ++  + ++L +                 LK  VA I+ G++       
Sbjct: 454 EALGSNGSTSMGSVCASTMSLLNAGV-------------PLKAPVAGIAMGLISQEIDGK 500

Query: 173 ----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T    +  +Q   +          A L  A+D   
Sbjct: 501 THYVALTDILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALTQARDARL 559

Query: 229 DLIKLQKDVI 238
            ++ +  + I
Sbjct: 560 HILDVMMEAI 569



 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 73/239 (30%), Gaps = 39/239 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      +++ A GS +    D T +L+  T     ++++  +             G 
Sbjct: 20  RTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKKPKDQLDFFPLTVDVEERQYAAGK 79

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q++     +  D   
Sbjct: 80  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATVMALNPD--- 130

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
                      L+D +      ++         G +  +   ++ G  +    + E    
Sbjct: 131 ----------HLYDVIAINAASASTQLAGLPFSGPIGGVRVALIKGQWVAFPTHTELEDA 180

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADL 230
             D              I+ V+  A   T           +++   A L  AK  I  L
Sbjct: 181 VFDMVVAGRALEDGDVAIMMVEAEATEQTIALVKGGAEAPTEEIVAAGLEAAKPFIKVL 239


>gi|255326374|ref|ZP_05367458.1| polyribonucleotide nucleotidyltransferase [Rothia mucilaginosa ATCC
           25296]
 gi|255296591|gb|EET75924.1| polyribonucleotide nucleotidyltransferase [Rothia mucilaginosa ATCC
           25296]
          Length = 739

 Score = 75.1 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 87/245 (35%), Gaps = 30/245 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R+++    +     GS L + G+T ++   TL     E+    +   K 
Sbjct: 347 VRIDGRGLTDIRQLTAEVEILPRVHGSALFERGETQIMGITTLNMLKMEQQLDSLHPVKS 406

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RA+  V+         I    
Sbjct: 407 KRYIHHYNFPPYSTGETGRVGSPKRREIGHG----ALAERAITPVLPSREEFPYAIRQVS 462

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP--- 173
           + + ++G T   ++  + ++L +                 L+  VA I+ G++       
Sbjct: 463 EALGSNGSTSMGSVCASTLSLLNAGV-------------PLRAPVAGIAMGLVSDEVDGE 509

Query: 174 -----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
                + D+   ED+  D+D     T    +  +Q   +            L  A++   
Sbjct: 510 TRYAALTDILGAEDALGDMDFKVAGTSEF-VTAIQLDTKLDGIPASVLAGALTQAREARL 568

Query: 229 DLIKL 233
            ++++
Sbjct: 569 HILEV 573



 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 80/253 (31%), Gaps = 44/253 (17%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLL-TTA---TLEEKVPMWIRNTKHGWITAEYGM 65
           R +      ++K A GS LV   D T LL  TA   +  E    +             G 
Sbjct: 21  RHVRFETGRLAKQAAGSVLVTIDDETTLLSATAIGKSPREGFDFFPLTVDVEERMYAGGK 80

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P S     +RE   GR    +    R+I R LR           Q+++     + D   
Sbjct: 81  IPASY---FRRE---GRPSTEAILAARLIDRPLRPAFTKGIRNEVQVVVTVLTYEPDEIY 134

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
            T AI  A  +                      G +  +   ++ G  +    Y +    
Sbjct: 135 NTFAINAASASTSLSGA-------------PFNGPIGGVRMALIDGQWVCFPKYSQLENA 181

Query: 186 DVDANFV--------MTDSGHIVEVQGSAERATF-----------SQDHFFAMLNLAKDR 226
             D             T+   I+ V+  A   ++           +++     L  AK  
Sbjct: 182 VFDMAVAGRIVTKADGTEDVAIMMVEAEATDNSWKLIKEDGQTAPTEEIVAEGLEAAKPF 241

Query: 227 IADLIKLQKDVIS 239
           IA L K Q D+++
Sbjct: 242 IAALCKAQADLVA 254


>gi|282866915|ref|ZP_06275947.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Streptomyces sp. ACTE]
 gi|282558228|gb|EFB63798.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Streptomyces sp. ACTE]
          Length = 737

 Score = 75.1 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 81/242 (33%), Gaps = 14/242 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R ++          GS L + G+T +L   TL     E+    +     
Sbjct: 338 VRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 397

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  +   R+ G       +  RA+  V+         I    
Sbjct: 398 KRYMHNYNFPPYSVGETGRVGSPKRREIGHG----ALAERAIVPVLPSREEFPYAIRQVS 453

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  + ++L +    ++       +  + +               + D
Sbjct: 454 EALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIAMGLISQEIDGKTHYV-----ALTD 508

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    +  +Q   +          A L  A+D    ++ +  +
Sbjct: 509 ILGAEDAFGDMDFKVAGTKQF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMNE 567

Query: 237 VI 238
            I
Sbjct: 568 AI 569



 Score = 62.0 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 73/243 (30%), Gaps = 39/243 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      ++K A GS +    D T +L+  T     ++++  +             G 
Sbjct: 20  RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDQLDFFPLTVDVEERQYAAGK 79

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           QI+     +  D   
Sbjct: 80  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLY 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G + A    ++ G  +    + E    
Sbjct: 134 DVVAINAASASTILAGL-------------PFSGPIGATRVALIKGQWVAFPTHTELEDA 180

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
             D              I+ V+  A   T           +++   A L  AK  I  L 
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLEAAKPFIKALC 240

Query: 232 KLQ 234
           K Q
Sbjct: 241 KAQ 243


>gi|320008201|gb|ADW03051.1| guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Streptomyces flavogriseus ATCC
           33331]
          Length = 737

 Score = 75.1 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 81/242 (33%), Gaps = 14/242 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R+ GR    +R ++          GS L + G+T +L   TL     E+    +     
Sbjct: 338 VRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 397

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P S G   +  +   R+ G       +  RA+  V+         I    
Sbjct: 398 KRYMHNYNFPPYSVGETGRVGSPKRREIGHG----ALAERAIVPVLPSREEFPYAIRQVS 453

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           + + ++G T   ++  + ++L +    ++       +  + +               + D
Sbjct: 454 EALGSNGSTSMGSVCASTMSLLNAGVPLKAAVAGIAMGLISQEIDGKTHYV-----ALTD 508

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    +  +Q   +          A L  A+D    ++ +  +
Sbjct: 509 ILGAEDAFGDMDFKVAGTKQF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMNE 567

Query: 237 VI 238
            I
Sbjct: 568 AI 569



 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 73/243 (30%), Gaps = 39/243 (16%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      ++K A GS +    D T +L+  T     ++++  +             G 
Sbjct: 20  RTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDQLDFFPLTVDVEERQYAAGK 79

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           QI+     +  D   
Sbjct: 80  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETIMALNPDHLY 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G + A    ++ G  +    + E    
Sbjct: 134 DVVAINAASASTILAGL-------------PFSGPIGATRVALIKGQWVAFPTHTELEDA 180

Query: 186 DVDANFVM----TDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLI 231
             D              I+ V+  A   T           +++   A L  AK  I  L 
Sbjct: 181 VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLEAAKPFIKTLC 240

Query: 232 KLQ 234
           K Q
Sbjct: 241 KAQ 243


>gi|170067650|ref|XP_001868566.1| exosome complex exonuclease RRP46 [Culex quinquefasciatus]
 gi|167863769|gb|EDS27152.1| exosome complex exonuclease RRP46 [Culex quinquefasciatus]
          Length = 217

 Score = 75.1 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 80/239 (33%), Gaps = 38/239 (15%)

Query: 9   NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
           + +R +     +   ++GS ++  G+T +  +     +V +   N +  ++  E    PR
Sbjct: 8   DSLRPMFCELNILTRSDGSAMLTQGETAVTASVNGPVEVKLQHMNVEKSYV--EIHFRPR 65

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
           S           G    R  E   +I     S +  +      + I    +Q  GG    
Sbjct: 66  S---------GMGSVNDRLLE--NLIRNTYESALLTALHPRTAVSIQIQEMQDRGGLVAC 114

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAI-SCGMLCGYPIVDLDYGEDSTIDV 187
           AI    +AL D    M             K  VAA+ S     G   +D D         
Sbjct: 115 AINAVCLALIDSGIEM-------------KYLVAAVHSVLDEEGGITLDPDELRAKDARA 161

Query: 188 DANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI-------ADLIKLQKDVI 238
              FV    S + V +        F+ + +   L ++ D +         ++  Q++V+
Sbjct: 162 RFTFVFENTSRNTVSI---YTHGKFTSEQYHRALRMSTDAVGRVFDFYRTIVAKQQNVL 217


>gi|224138050|ref|XP_002322717.1| predicted protein [Populus trichocarpa]
 gi|222867347|gb|EEF04478.1| predicted protein [Populus trichocarpa]
          Length = 439

 Score = 75.1 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 59/287 (20%), Positives = 100/287 (34%), Gaps = 48/287 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   + R+ +L       A GS L K G T +L    +E   P    +   G I 
Sbjct: 36  IRPDARPLGRARDTTLALGAVASAHGSALAKIGSTTMLAAIKMEVMTPS-TESPDEGCIA 94

Query: 61  AEYGMLPRSTG-NRVKREAVS------------GRQGGRSQEI---QRMIGRA-LRSVVD 103
            ++ M P  +   R  R A +             RQ   S  I   QR+I  A +  +++
Sbjct: 95  IDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISRQVKFSASIDSPQRLILHAEISGMIN 154

Query: 104 LSAL------GSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM------------- 144
           L  L       +    +D   + ADG    AA+  A  A       +             
Sbjct: 155 LKELSLVSGKAAWMAYLDIYCLDADGALFDAALLSAVAAFSHLQIPIVSLNDDGKIVLVS 214

Query: 145 -EDCSNKFQLSQVLKGH--------VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
            ED   K +   V K            +++C +   Y + D    E+S ++     V+  
Sbjct: 215 EEDEGAKLEKEPVNKEKRKLTLSSIPFSLTCILHKNYILADPTAEEESIMETLVTVVLDS 274

Query: 196 SGHIVEVQGSAERATFSQDH-FFAMLNLAKDRIADLIKLQKDVISNE 241
           S  +V        + F+        + L + R+ +L ++  + IS E
Sbjct: 275 SARLVSFYKPG-GSVFAYTSAVKDCVALTRQRVKELQEILDEAISAE 320


>gi|213512498|ref|NP_001134892.1| Exosome complex exonuclease RRP42 [Salmo salar]
 gi|209736940|gb|ACI69339.1| Exosome complex exonuclease RRP42 [Salmo salar]
          Length = 291

 Score = 74.7 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 70/247 (28%), Gaps = 29/247 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R + +   +    +GS  V  G T +L     E   P  +     G++ 
Sbjct: 22  LRVDGRGCEDYRHMEIETEMVSNTDGSAKVTLGHTDVLVGVKAEMGKPRPMV-PGEGYLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QI 112
                   +T     R            E+   + +    R  VDL +L          +
Sbjct: 81  FFVDCSANATPEFEGRGG-----DELGMELSNTLYKVFNNRYSVDLKSLCISPGEHCWVL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ--VLKGHVAAISCGMLC 170
            +D  ++Q DG    A       AL +        S   +  +   L           + 
Sbjct: 136 YVDVLLLQCDGNLFDAISVAIKAALFNTKIPKVHISEDEEGGKEIELSDDPYDCMRLNVE 195

Query: 171 GYP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
             P            +VD    E +         +T  G +  V+      +   +  F 
Sbjct: 196 NVPCIVTLCKVGHRHVVDATLQEKACSVASLIISVTRKGTVTCVRKVG-GGSLDPESIFE 254

Query: 219 MLNLAKD 225
           M    K 
Sbjct: 255 MTETGKR 261


>gi|322790229|gb|EFZ15228.1| hypothetical protein SINV_06363 [Solenopsis invicta]
          Length = 139

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 14/142 (9%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
            GR+    R IS+       A+ S + K GDT  +     E   P       HG+I    
Sbjct: 2   DGRKFLSFRPISINVSSIVQADSSAIFKLGDTTAVCGIKAELATPK-ADTPDHGYIVPNV 60

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALG---SRQIII-DCD 117
            + P  +          G    ++Q + ++I   L +   +DL  L    ++ + +  CD
Sbjct: 61  ELSPLCSSKFR-----PGPPSEQAQVLSKLIDIILSNSVALDLKDLCICRNKLVWVLYCD 115

Query: 118 V--IQADGGTRTAAITGAWVAL 137
           +  +  +G    A     + AL
Sbjct: 116 ILCLNYNGSVIDACTGAMFAAL 137


>gi|281343574|gb|EFB19158.1| hypothetical protein PANDA_000598 [Ailuropoda melanoleuca]
          Length = 271

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 78/262 (29%), Gaps = 28/262 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R + +   V     GS  VK G T +L     E   P  +     G++ 
Sbjct: 3   LRVDGRGCEDYRYVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL-RSVVDLSALGSR------QII 113
                   +T     R            EI   + R   +S VDL +L          + 
Sbjct: 62  FFVDCSANATPEFEGRGG-----DDLGTEIANTLYRIFNKSSVDLKSLCISPREHCWILY 116

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ--VLKGHVAAISCGMLCG 171
           +D  +++  G            AL +            + S+   L           +  
Sbjct: 117 VDVLLLECGGNLFDTICIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVEN 176

Query: 172 YP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
            P            +VD    E++         +T +G +  ++    + +   +  F M
Sbjct: 177 VPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSTGVVTCMRKVG-KGSLDPESVFEM 235

Query: 220 LNLAKDRIADLIKLQKDVISNE 241
           +   K     L    + V+  E
Sbjct: 236 METGKRVGKVLHASLQSVLHKE 257


>gi|328871066|gb|EGG19437.1| hypothetical protein DFA_00014 [Dictyostelium fasciculatum]
          Length = 294

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 79/265 (29%), Gaps = 40/265 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM--------WIR 52
           +R  GR  +  R+I+++       +GS  VK G+T ++     E  +             
Sbjct: 21  VRPDGRGLDCFRKINISTGSIMTTDGSSFVKIGNTSVIAGVKAEVALTPTQSDNSISSNN 80

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ----EIQRMIGRALRSVVDLSALG 108
           N  +  +     M P  +         S +   ++     ++  ++ R L  + D     
Sbjct: 81  NNNNNKMFVNVEMGPICSNI-----FSSSKPSEKAMSLCSQLNSLVNR-LE-INDKELYF 133

Query: 109 SRQ------IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV------ 156
             Q      + ID   +  +G    A +     AL +                       
Sbjct: 134 DDQGKYSWYLYIDLYCLDYNGNLMDACVLAIMSALKNVKLPKGIVVESSASEAPQLFKDT 193

Query: 157 --------LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
                   +  ++   +  +L  Y + D    E+       +    D   I  +  +   
Sbjct: 194 EQPMRSLNIGTYLIPQTFVLLNDYLLTDPSLEEEKLSSGTISITFNDRFEICTLLYTG-I 252

Query: 209 ATFSQDHFFAMLNLAKDRIADLIKL 233
            + S+      L   K R  ++I L
Sbjct: 253 TSISEKILEQCLEKTKKRSTEIINL 277


>gi|294893125|ref|XP_002774343.1| Exosome complex exonuclease RRP46, putative [Perkinsus marinus ATCC
           50983]
 gi|239879681|gb|EER06159.1| Exosome complex exonuclease RRP46, putative [Perkinsus marinus ATCC
           50983]
          Length = 258

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 33/189 (17%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA--TLEEKVPMWIRNTKHGWI 59
           R+ GR+ + MR  +L   +    +GS  + FGDT +L      +E + P+ +    +   
Sbjct: 26  RIDGRECSMMRPPTLELGLLPQKDGSARLGFGDTEVLVGVNGPVENRFPLGVSTPGY--- 82

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ-IIIDCDV 118
                  P     R  R +       +S E Q  + + + +++D   L     + +  +V
Sbjct: 83  -------PLDVTVR--RASGMPTAEDKSVEYQ--LTKFINTIIDTHLLPGNTMVTVAVEV 131

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGYPI 174
           +  DG   +     A +AL D              S  L+G   A + G          +
Sbjct: 132 MNNDGSLLSTIFNAAILALLDAG------------SIPLRGTAFAAALGKRYHRGGTQIL 179

Query: 175 VDLDYGEDS 183
           VD D  E+ 
Sbjct: 180 VDPDQSEEE 188


>gi|74199186|dbj|BAE33136.1| unnamed protein product [Mus musculus]
          Length = 235

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 60/193 (31%), Gaps = 27/193 (13%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R  +  + +    +GS     GDT +L       +V                 +  ++T
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK------------VSKEIFNKAT 75

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
              + R  + G  G   +  +R++     +VV  +      I +   V+   G      +
Sbjct: 76  LEVILRPKI-GLPGVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCL 134

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDA 189
             A +AL D    M                   ++C +   G  ++D    ++       
Sbjct: 135 NAACMALVDAGVPMRAL-------------FCGVTCALDSDGNLVLDPTTKQEKEARAIL 181

Query: 190 NFVMTDSGHIVEV 202
            F +  +   + +
Sbjct: 182 TFALDSAKQKLLM 194


>gi|213850433|ref|ZP_03381331.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 369

 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 85/216 (39%), Gaps = 28/216 (12%)

Query: 33  GDTHLLTTATLEEKVPMWIRNTKHGWIT----AEYGMLPRSTGNRVKREAVSGRQGGRSQ 88
           G+T  L TATL       + +   G  T      Y   P S G      +   R+ G   
Sbjct: 4   GETQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHG- 62

Query: 89  EIQRMIGRALRSVV-DLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDC 147
              R+  R + +V+ D+       + +  ++ +++G +  A++ GA +AL D        
Sbjct: 63  ---RLAKRGVLAVMPDMDKFP-YTVRVVSEITESNGSSSMASVCGASLALMDAGV----- 113

Query: 148 SNKFQLSQVLKGHVAAISCGML---CGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQ 203
                    +K  VA I+ G++     Y ++ D+   ED   D+D     +  G I  +Q
Sbjct: 114 --------PIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDG-ISALQ 164

Query: 204 GSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
              +    +++     LN AK     ++ + +  I+
Sbjct: 165 MDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 200


>gi|307185835|gb|EFN71676.1| Exosome complex exonuclease RRP46 [Camponotus floridanus]
          Length = 220

 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 70/214 (32%), Gaps = 32/214 (14%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R ++    +   ++GS +   GDT ++       +V           I   Y  L    
Sbjct: 12  LRPMNCEINLLSRSDGSTMFMQGDTTIVAGINGPMEVKSQKMAYDKLSIEVTYTPLT--- 68

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
                      +   R  E    I  +  S + +S   +  I I+   +Q  GG    AI
Sbjct: 69  --------GPAKVDDRLIET--YIRESCESAILVSLHPNTMICINLQEVQDSGGLLACAI 118

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC--GYPIVDLDYGEDSTIDVD 188
             + +AL +    M             K  +AA+SC +    G  I+D D  +      +
Sbjct: 119 NASCLALINSGLSM-------------KFTIAAVSCMIEKETGKIIMDPDNTQLKNAKAE 165

Query: 189 ANFVMTDSGH-IVEVQGSAERATFSQDHFFAMLN 221
             +        IV          FSQ  F A ++
Sbjct: 166 FTYAFDSINKDIVCCHSVGR---FSQSEFLASVD 196


>gi|239790360|dbj|BAH71746.1| ACYPI003501 [Acyrthosiphon pisum]
          Length = 267

 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 69/212 (32%), Gaps = 23/212 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+    R+ SL       A+GS +VK G+T ++     E  VP        G++  
Sbjct: 22  RNDGRELMNFRDASLNLNTIHTADGSAVVKIGNTAVVCGIKAELGVPK-AEAPDIGYLLV 80

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSALGSRQ---III-- 114
              +    +     ++   G     + ++   +     +   +DL  L       + +  
Sbjct: 81  NIELPSLCS-----KKIRPGIPCDEAMQMTSFLNEVCNNCKILDLQQLCISVDKLVWVLS 135

Query: 115 -DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV--------AAIS 165
            D   +  DG    A +     AL            + + + V++ ++         + +
Sbjct: 136 CDIYCLNYDGSVLDACLIALLSALQTVKIPEVKYDKETEETTVIENYIPLKVNSLPVSST 195

Query: 166 CGMLCGYPIV-DLDYGEDSTIDVDANFVMTDS 196
            G+     I+ D    E+         V   S
Sbjct: 196 FGVFNEKYILADPTEEEEQLCVSKLTVVTNGS 227


>gi|73985825|ref|XP_533858.2| PREDICTED: similar to Exosome complex exonuclease RRP42 (Ribosomal
           RNA processing protein 42) (Exosome component 7) (p8)
           isoform 1 [Canis familiaris]
          Length = 291

 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 77/263 (29%), Gaps = 29/263 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R + +   V     GS  VK G T +L     E   P  +     G++ 
Sbjct: 22  LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QI 112
                   +T     R            EI   + R    +S +DL +L          +
Sbjct: 81  FFVDCSANATPEFEGRGG-----DDLGTEIANTLYRIFNNKSSIDLKSLCISPREHCWIL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ--VLKGHVAAISCGMLC 170
            +D  +++  G            AL +            + S+   L           + 
Sbjct: 136 YVDVLLLECGGNLFDTICIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCFRLSVE 195

Query: 171 GYP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
             P            +VD    E++         +T  G +  ++    + +   +  F 
Sbjct: 196 NVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVG-KGSLDPESIFE 254

Query: 219 MLNLAKDRIADLIKLQKDVISNE 241
           M+   K     L    + V+  E
Sbjct: 255 MMETGKRVGKVLHASLQSVLHKE 277


>gi|268570481|ref|XP_002640755.1| C. briggsae CBR-ARX-4 protein [Caenorhabditis briggsae]
 gi|187040399|emb|CAP20857.1| CBR-ARX-4 protein [Caenorhabditis briggsae AF16]
          Length = 539

 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 56/172 (32%), Gaps = 22/172 (12%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R     R +S+   V    +GS   +FG+T +L      +    W  +     +T     
Sbjct: 31  RSSTAFRPLSVKCGVFGAQDGSGYAEFGNTRVLAQILGPDGDGKWEEDHAKVVVTL---- 86

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
                      E  +     R++        +  +V+ ++    + I I+  V+  DGG 
Sbjct: 87  --------KGVENETSVAEWRAELTS-----SASAVIFVNKYPGKVIEIEITVLSDDGGV 133

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKF-----QLSQVLKGHVAAISCGMLCGY 172
            + AIT   +AL          +             +     + S G+L G 
Sbjct: 134 LSTAITAMALALAHSGIEHMGLTASVHVAMRPNGDYITDPSTSESSGILGGV 185


>gi|20070392|ref|NP_613052.1| exosome complex component RRP46 [Mus musculus]
 gi|21759413|sp|Q9CRA8|EXOS5_MOUSE RecName: Full=Exosome complex component RRP46; AltName:
           Full=Exosome component 5; AltName: Full=Ribosomal
           RNA-processing protein 46
 gi|12839596|dbj|BAB24607.1| unnamed protein product [Mus musculus]
 gi|12840879|dbj|BAB24993.1| unnamed protein product [Mus musculus]
 gi|148692300|gb|EDL24247.1| exosome component 5, isoform CRA_b [Mus musculus]
          Length = 235

 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 57/184 (30%), Gaps = 27/184 (14%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R  +  + +    +GS     GDT +L       +V                 +  ++T
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK------------VSKEIFNKAT 75

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
              + R  + G  G   +  +R++     +VV  +      I +   V+   G      +
Sbjct: 76  LEVILRPKI-GLPGVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCL 134

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDA 189
             A +AL D    M                   ++C +   G  ++D    ++       
Sbjct: 135 NAACMALVDAGVPMRAL-------------FCGVTCALDSDGNLVLDPTTKQEKEARAIL 181

Query: 190 NFVM 193
            F +
Sbjct: 182 TFAL 185


>gi|195166781|ref|XP_002024213.1| GL22907 [Drosophila persimilis]
 gi|194107568|gb|EDW29611.1| GL22907 [Drosophila persimilis]
          Length = 328

 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 64/180 (35%), Gaps = 22/180 (12%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWITAEY 63
           G+   ++  + L   V     GS  +++G+T ++       ++     R    G I    
Sbjct: 39  GKNPKKLSPL-LRAGVLTTVRGSAYMEYGNTKVMAIVAPPHELMRATARRMNMGVINCFV 97

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
                +TG     E+V      R + +  M+ +AL  VV  +   + Q+ I   ++  DG
Sbjct: 98  NFAAFATGEL---ESVP----EREKHLGSMLSKALEPVVCRTEFLNFQLDIRVLILDDDG 150

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
              + AI    VAL +C     D              V A +  +      ++    E+ 
Sbjct: 151 CLLSTAINCCGVALVECGISTYDL-------------VTASTACIYRDNVFLNPTAKEEE 197


>gi|308473330|ref|XP_003098890.1| hypothetical protein CRE_31358 [Caenorhabditis remanei]
 gi|308268029|gb|EFP11982.1| hypothetical protein CRE_31358 [Caenorhabditis remanei]
          Length = 214

 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 69/242 (28%), Gaps = 41/242 (16%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
           GR    +RE+       K A+GS     G T +  + +          N +   +   Y 
Sbjct: 3   GR----LREMRCELSFLKNADGSACFSQGSTCIWASCSGPGDGHASKANEEAMTLDISYR 58

Query: 65  ML----PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
                   S                    +  +I   +   ++L       I +    IQ
Sbjct: 59  ANCGDNKFSV-------------------LNNIIQSTISKAINLELFPHTTIAVTIHGIQ 99

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
            DG     AI GA  AL D                  +     +    L    I+D    
Sbjct: 100 DDGSIGAVAINGACFALLD-------------NGMPFEAVFCGVLVVRLKDELIIDPTTK 146

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           ++++      F V   +    EV        +  +   A  +LA+     + +  + V+ 
Sbjct: 147 QEASSTGRVLFAVCNGADGHPEVCSMDAIGQWDFNQLEAAWSLAQPSATAIFEFYRSVMQ 206

Query: 240 NE 241
            +
Sbjct: 207 RK 208


>gi|170084377|ref|XP_001873412.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650964|gb|EDR15204.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 284

 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 79/253 (31%), Gaps = 31/253 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           +RL GR   +MR  ++T       + G      G T +L     +  V         G I
Sbjct: 22  LRLDGRLPLEMRSPTITFG----PDLGWVECGLGKTRVLAQVEAK-MVKPAPERPFEGTI 76

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL-RS-VVDLSALGSRQ------ 111
           T    + P ++      E   GR       I RM+ + L RS  VD  +L          
Sbjct: 77  TIHSEISPMASSEY---EPGRGRPSDEEVAITRMLDKVLKRSDAVDKESLCILAGQRVWH 133

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQH-MEDCSNKFQLSQVLKGHVAAISC---- 166
           I +    +   G     A      AL    +  +E   ++  +   L      ++     
Sbjct: 134 IRLTLHFLADAGNMLDCACLAGITALRHFRRPDVEVVGDEVIVHSPLDRAPVPLAIHHTP 193

Query: 167 --------GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
                     +   P++D +  E        +  +     I  +Q          +   +
Sbjct: 194 FCFTFAFFPDITTPPVLDPNQLEQRLSAGLVSIALNAQKEICVLQKLG-GVPLETEEVLS 252

Query: 219 MLNLAKDRIADLI 231
           ++N+A  +  +L 
Sbjct: 253 LVNVAVGKAKELH 265


>gi|21706518|gb|AAH34358.1| Exosome component 5 [Mus musculus]
          Length = 235

 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 57/184 (30%), Gaps = 27/184 (14%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R  +  + +    +GS     GDT +L       +V                 +  ++T
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK------------VSKEIFNKAT 75

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
              + R  + G  G   +  +R++     +VV  +      I +   V+   G      +
Sbjct: 76  LEVILRPKI-GLPGVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCL 134

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDA 189
             A +AL D    M                   ++C +   G  ++D    ++       
Sbjct: 135 NAACMALVDAGVPMRAL-------------FCGVTCALDSDGNLVLDPTTKQEKEARAIL 181

Query: 190 NFVM 193
            F +
Sbjct: 182 TFAL 185


>gi|209877631|ref|XP_002140257.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
 gi|209555863|gb|EEA05908.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
           RN66]
          Length = 239

 Score = 74.0 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 68/201 (33%), Gaps = 22/201 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GRQ  ++R I++   V     GS     G +     A   E+    IR   +  + 
Sbjct: 3   IRLDGRQYLELRPINIRIGVFHGLSGSSDFSMGLSRATAVAWQPEET-NNIRGKSYLDVI 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
                   STG+  K              ++    R L  ++D   +    + +   VI 
Sbjct: 62  IRPN--SGSTGDTEK-------------LLELYCTRVLEDIIDFKQIPRCIVSVAIQVIS 106

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
            DG         A +AL D    M        +++     +  +S      + I+D +  
Sbjct: 107 QDGPIFPICFNAAVLALLDAGIPMTTTPLAISIAEACTYQLNDLS-----KHIIIDPNGE 161

Query: 181 E-DSTIDVDANFVMTDSGHIV 200
           E D  I      V + S  I+
Sbjct: 162 EIDKCISCSHYIVSSRSNQII 182


>gi|326428882|gb|EGD74452.1| hypothetical protein PTSG_05816 [Salpingoeca sp. ATCC 50818]
          Length = 280

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 83/261 (31%), Gaps = 28/261 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR +++MR + +T    +Y  G      G+T  +   +    V         G++ 
Sbjct: 28  VRLDGRGKSEMRRVLVTLGRQQY--GQATASIGNTQAICRVSCSI-VRPHEDRPTKGFVR 84

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQ--I 112
               + P ++ +        GR    S  + R++    R    +D  +L    G +   +
Sbjct: 85  YGVTLSPMASPDY----DAGGRPSAASIYLTRLLEHIFREARALDDESLCIVAGEKVWAV 140

Query: 113 IIDCDVIQADGGTRTAAITG------------AWVALHDCLQHMEDCSNKFQLSQVLKGH 160
            ++  V   DG    A                  +A  D + H  D      L+   +  
Sbjct: 141 SVNVTVTNDDGNMEDACALAALAGLMHFRRPYVSIAGQDVVVHPFDEHEPVSLAINHRPL 200

Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
               +        +VD    E    D   +  M   G I  +  S+E      +   A++
Sbjct: 201 NVTTALFDNGDLALVDPTKIELKVADGSISVAMNTHGEICGI-NSSEGLAVDPEQMEAIV 259

Query: 221 NLAKDRIADLIKLQKDVISNE 241
              K R+  L          E
Sbjct: 260 AATKHRVTHLFTALNKAFPKE 280


>gi|198466492|ref|XP_001354017.2| GA20773 [Drosophila pseudoobscura pseudoobscura]
 gi|198150625|gb|EAL29754.2| GA20773 [Drosophila pseudoobscura pseudoobscura]
          Length = 328

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 64/180 (35%), Gaps = 22/180 (12%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWITAEY 63
           G+   ++  + L   V     GS  +++G+T ++       ++     R    G I    
Sbjct: 39  GKNPKKLSPL-LRAGVLTTVRGSAYMEYGNTKVMAIVAPPHEMMRATARRMNMGVINCFV 97

Query: 64  GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
                +TG     E+V      R + +  M+ +AL  VV  +   + Q+ I   ++  DG
Sbjct: 98  NFAAFATGEL---ESVP----EREKHLGSMLSKALEPVVCRTEFLNFQLDIRVLILDDDG 150

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
              + AI    VAL +C     D              V A +  +      ++    E+ 
Sbjct: 151 CLLSTAINCCGVALVECGISTYDL-------------VTASTACIYRDNVFLNPTAKEEE 197


>gi|330804424|ref|XP_003290195.1| hypothetical protein DICPUDRAFT_154682 [Dictyostelium purpureum]
 gi|325079706|gb|EGC33294.1| hypothetical protein DICPUDRAFT_154682 [Dictyostelium purpureum]
          Length = 303

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 87/260 (33%), Gaps = 29/260 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR    MR I +       + G   V+ G T + T+ T +   P   R    G+   
Sbjct: 22  RIDGRSITDMRSIKIEFG---KSFGLVEVQLGKTRVYTSITCDIVEPKPER-PNEGFYVF 77

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113
              + P S+ +         R      E+ R+I + L+    +D  +L          I 
Sbjct: 78  NTDISPMSSVS-----VDPNRGNPLENELGRIIEKGLKESRAIDTESLCIISGSKVWSIK 132

Query: 114 IDCDVIQADGGTRTAAITGAWVALHD------CLQHMEDCSNKFQLSQV----LKGHVAA 163
           I   ++   G     A      AL         +   E   +     +     +     +
Sbjct: 133 ISIHILDDCGNLLDCASISVIAALLHFRKPDVTVIGNEATIHPIDEREPVPLSIHHTPIS 192

Query: 164 ISCGMLCGYPI-VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
           I+ G      + VD D  E+S +D   +F++     I  V       + S         +
Sbjct: 193 ITFGFFPNEIMIVDPDNKEESVMDGKLSFLVNIHKEICGVSKGG-GTSTSVHQVLKCSKI 251

Query: 223 AKDRIADLIKLQKDVISNEV 242
           A  + A++    K+ I N++
Sbjct: 252 AVIKAAEITLQIKESIINDI 271


>gi|322795793|gb|EFZ18472.1| hypothetical protein SINV_11798 [Solenopsis invicta]
          Length = 220

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 72/233 (30%), Gaps = 38/233 (16%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R I+    +   ++GS +   GDT ++       +            I   Y  L    
Sbjct: 12  LRPINCEINLLSRSDGSTMFMQGDTTIIVGVNGPLETRSQKMAYDRASIEVTYTPL---- 67

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
                      +   R  E    I     S + +S   +  + I+   +Q  GG    AI
Sbjct: 68  -------KGPAKIDDRLIET--YIKETCESAILVSFHPNTMVCINLQEMQDSGGLLACAI 118

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC--GYPIVDLDYGEDSTIDVD 188
             + +AL +    +             K  +AA+SC +    G  I+D D  +      +
Sbjct: 119 NASCLALINSGLSL-------------KFTIAAVSCMIEKETGQVIIDPDSSQLQNAKAE 165

Query: 189 ANFVMTDSGHIVEVQGSA----ERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
             +          +            FSQ  F A ++  +     +    ++V
Sbjct: 166 FTYA------FDSINKDLVCCHSVGRFSQSEFLASVDKCRQVSKYVFDYYREV 212


>gi|317574781|ref|NP_001188120.1| exosome complex exonuclease rrp42 [Ictalurus punctatus]
 gi|308322915|gb|ADO28595.1| exosome complex exonuclease rrp42 [Ictalurus punctatus]
          Length = 291

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 75/262 (28%), Gaps = 34/262 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR     R + +   V    +GS  V  G T +L     E   P  +     G++  
Sbjct: 23  RVDGRGCEDYRHMEIETDVVSNTDGSAKVSLGQTDILVGIKAEIGRPRPMV-PDEGYLEF 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QII 113
                  +T     R            E+   + +    R  +DL +L  R       + 
Sbjct: 82  FVDCSANATPEFEGRGGE-----ELGVELSNNLYKVFNNRHSLDLRSLCIRPGENCWVLY 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ--VLKGHVAAISCGMLCG 171
           +D  ++Q DG    A       AL +        S   +  +   L           +  
Sbjct: 137 VDVLLLQCDGNLFDAMSIAIKAALFNTRIPNVHISEDEEGGKEIELSDDPYDCMRLNVEN 196

Query: 172 YP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
            P            +VD    E S         +T  G +  V+      +   D  F M
Sbjct: 197 VPCIVTLCKIGHRHVVDATLQEKSCSVASLLISVTHKGTVTCVRKLG-GGSLDPDSIFEM 255

Query: 220 LNLAKDRIADLIK-----LQKD 236
               K     L       LQK+
Sbjct: 256 TETGKRVGKMLHVPLMELLQKE 277


>gi|297739657|emb|CBI29839.3| unnamed protein product [Vitis vinifera]
          Length = 311

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 95/275 (34%), Gaps = 38/275 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   + R+ SL       A+GS L K G T +L    +E   P    +   G I 
Sbjct: 36  IRPDARPLGRARDTSLALGAVASADGSALAKIGCTTMLAAVKMEVMTPP-KESPDEGSIA 94

Query: 61  AEYGMLPRSTG-NRVKREAVSGRQGGRSQEIQRMIGR------ALRSVVDLSAL------ 107
            E+ M P  +   R  R A        S+++   I R      +   +++L  L      
Sbjct: 95  IEFYMPPICSPLVRPGRPAEEAPVV--SKQLSDTILRHVNVVTSFSGMINLKELSLVSGK 152

Query: 108 GSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM----------------------E 145
            +    +D   + ADG    AA+  A  A       +                      +
Sbjct: 153 AAWMAYLDIYCLDADGSLFDAALLAAVAAFSHLRIPVVSLNEEGRVVVVSEENEEGKSEK 212

Query: 146 DCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
           +  NK +    L     +++C +   Y + D    E+S ++     V+  SG +V +   
Sbjct: 213 EPVNKGKRKLTLSSLPFSLTCILHKNYILADPTAEEESIMETLVTVVLDSSGQLVSLYKP 272

Query: 206 AERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                         + L + R+ +L  +  + IS+
Sbjct: 273 GGPVLAYASAVQDCIALTRQRVKELKSILNEAISD 307


>gi|295667607|ref|XP_002794353.1| 3' exoribonuclease family protein [Paracoccidioides brasiliensis
           Pb01]
 gi|226286459|gb|EEH42025.1| 3' exoribonuclease family protein [Paracoccidioides brasiliensis
           Pb01]
          Length = 350

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 88/289 (30%), Gaps = 64/289 (22%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLL------------------TTATLEEKV 47
           R+ +++R+I L   +   A GS  ++F  + +L                   T    + +
Sbjct: 41  RKPDELRKIFLKTGLIPSASGSAYLEFQTSTILPRSKLKTLIPPSSSLKLTCTVHGPKPL 100

Query: 48  PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL 107
           P     + +  ++      P +T    +R +       R  ++   +  AL+ V+     
Sbjct: 101 PRSAPFSPNLLLSTHVKFAPFAT---RRRRSYIRDVNER--DLGVHLETALKGVIIGERW 155

Query: 108 GSRQIIIDCDVIQA------------------DG----GTRTAAITGAWVALHDCLQHME 145
               + I   +++                   DG          IT A  A+ D      
Sbjct: 156 PKSGLDITVTILEGEDDRWWGDALSSSPFGGIDGWGLMNVLAGCITVASAAIVDARIDCV 215

Query: 146 DCSNKFQLSQVLKGHVAAISCGMLCGY------PIVDLDYGEDSTIDVDANFV--MTDSG 197
           D       + V   H+                  ++D D  E       A  V  M    
Sbjct: 216 DLITGGVAAFVENPHIEVSGEPEETNEKGRDRRLVLDPDPSE-HRGIAAACVVGYMPSRD 274

Query: 198 HIVEV---------QGSAERATFSQDHF-FAMLNLAKDRIADLIKLQKD 236
            I E+          G +++ + S +      +N A+   A L++  ++
Sbjct: 275 EITELWLKGDTSDFHGGSQKGSLSHEALIDGAVNAARGTQAVLMEASRE 323


>gi|19113177|ref|NP_596385.1| exosome subunit Rrp43 (predicted) [Schizosaccharomyces pombe 972h-]
 gi|1723274|sp|Q10205|RRP43_SCHPO RecName: Full=Exosome complex component rrp43; AltName:
           Full=Ribosomal RNA-processing protein 43
 gi|3451295|emb|CAA20427.1| exosome subunit Rrp43 (predicted) [Schizosaccharomyces pombe]
          Length = 270

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 75/215 (34%), Gaps = 15/215 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  ++ REI +       A GS +++ G+   +     E   P +  +   GWI 
Sbjct: 34  VRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIAEP-FENSPNEGWIV 92

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA----LRSVVDLSALGSRQIIIDC 116
               + P  +            Q   SQE+ + + ++    L+S+       +  +  D 
Sbjct: 93  PNLELSPLCSSKFKPGPPSDLAQV-VSQELHQTLQQSNLINLQSLCIFEKKAAWVLYADI 151

Query: 117 DVIQADGGTRT---AAITGAW------VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG 167
             +  DG       AA+  A        A+ D       C++       L   V + S  
Sbjct: 152 ICLNYDGSAFDYAWAALFAALKTVKLPTAVWDEDLERVICASTLTRPVQLSTEVRSFSWS 211

Query: 168 MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEV 202
           +     + D    E+         ++  S +IV++
Sbjct: 212 VFDDKLLADPTDEEEDLSTEFLTIMLNSSKNIVKI 246


>gi|195354294|ref|XP_002043633.1| GM15571 [Drosophila sechellia]
 gi|194127801|gb|EDW49844.1| GM15571 [Drosophila sechellia]
          Length = 327

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 10/143 (6%)

Query: 8   ENQM--REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWITAEYG 64
             Q+  R   +   V     GS  +++G+T +LT     +++     R    G +     
Sbjct: 42  PTQLAPRNTFIRAGVLTTVRGSAYMEYGNTKVLTIVAPPKELIRASARRMNMGVLNCYVN 101

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
                TG+             R + +  M+ +AL  VV  +   + Q+ I   ++  DG 
Sbjct: 102 FAAFGTGDLDSVP-------ERERYLSSMLTKALEPVVCRTEFLNFQLDIRVLILDDDGC 154

Query: 125 TRTAAITGAWVALHDCLQHMEDC 147
             + AI    VAL +C     D 
Sbjct: 155 LLSTAINCCGVALVECGISTYDL 177


>gi|241813566|ref|XP_002416505.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp42, putative
           [Ixodes scapularis]
 gi|215510969|gb|EEC20422.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp42, putative
           [Ixodes scapularis]
          Length = 290

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 80/247 (32%), Gaps = 29/247 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR   + R+I L   V     GS  V+  +T +L     + + P    +T  G I 
Sbjct: 22  LRCDGRSCLEYRDIELETGVVSNCSGSAHVRLANTDILVGIKAQLETPD-PGSTDQGRIE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL---GSRQII-- 113
                   +      R          + EI   + +A RS   +DL +L     +Q+   
Sbjct: 81  FFVDCTANADPEFEGRGGEDI-----AAEISSALAQAYRSPKCLDLRSLAVVPGQQVWVL 135

Query: 114 -IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH------------ 160
            +D  +++  G    A       AL+D        +        ++              
Sbjct: 136 YVDILILECGGSLVDAVSVAVKAALYDLKIPKVSVTVDENGDPEVEVSGDPFDVEKLSTE 195

Query: 161 --VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
                I+   +    I+D    E +         +T SG I  +  +    +   ++   
Sbjct: 196 NVPCFITLSKVGQQFILDATQEEQACAVGSLALAVTASGKIAALFKAG-TGSLHPENVMD 254

Query: 219 MLNLAKD 225
           ++ + +D
Sbjct: 255 VIEVGRD 261


>gi|332375881|gb|AEE63081.1| unknown [Dendroctonus ponderosae]
          Length = 283

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 78/249 (31%), Gaps = 34/249 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR     R + L   + ++A GS  ++  +T +L    +E   P+       G I 
Sbjct: 19  FRVDGRDREGYRPMELETDIVQHAFGSARLRLANTDVLVAVKIEVDTPL-PEKPFEGKIE 77

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQI 112
                   +T +   R   S      + E+  ++  A  S    DL  L         ++
Sbjct: 78  FFVDCSANATPDFEGRGGES-----LAVELANILSSAYESPLTFDLRKLCILKGKKCWKL 132

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHD-------CLQHMEDCSNKFQLSQVLKGH----- 160
            +D  +++  G    A       ALH         +    D         ++        
Sbjct: 133 YVDVLILECGGNLFDAVSLAVKAALHITQVPKIKAVNIDGDNVEIEVSDNIIDCDRLNVE 192

Query: 161 --VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS--GHIVEVQGSAERATFSQDHF 216
                ++   +  + IVD    E+          ++      I  + G+    +  ++  
Sbjct: 193 NLPVLVTVCKIGNHCIVDPSLTEEQCAVGSVVVAVSKECFSTITSI-GTG---SLHEETL 248

Query: 217 FAMLNLAKD 225
           F  L+L   
Sbjct: 249 FECLDLGHK 257


>gi|327303316|ref|XP_003236350.1| exosome complex endonuclease 2/ribosomal RNA processing protein
           [Trichophyton rubrum CBS 118892]
 gi|326461692|gb|EGD87145.1| exosome complex endonuclease 2/ribosomal RNA processing protein
           [Trichophyton rubrum CBS 118892]
          Length = 292

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 90/261 (34%), Gaps = 30/261 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ +Q+R + LT        G+  V+ G T +L   + E   P   R+   G  T
Sbjct: 23  LRLDGRRFDQLRPVELTFG---DEHGNVKVQLGKTAVLVRISAELTTPRPERDCD-GIFT 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------I 112
               +   +          +GR       + R + + +R  + +D  +L   +      I
Sbjct: 79  VVVELNDMALPGY-----ETGRPSELEVSLSRTLDKIVRRSNALDTESLCIAKGRICWNI 133

Query: 113 IIDCDVIQADGGTRTAAITGAWVAL----------HDCLQHMEDCSNKFQLSQVLKGHVA 162
             D  ++  DGG   A+       L           D    +     K  +   L     
Sbjct: 134 RADIHILDCDGGLIDASCLAIMAGLLHFRLPESTVRDGEVTVFTTEEKVPVQLNLTKIPL 193

Query: 163 AISCGMLCGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +++  +       ++D    E++  +      +  +G I  +    + A     +     
Sbjct: 194 SVTFNLYDEGKIMLLDATTSEEAVSEGSLVVALDKTGEI-ALYSKPDGAPADPVNMVNCS 252

Query: 221 NLAKDRIADLIKLQKDVISNE 241
            LA +++ +L KL    +  E
Sbjct: 253 TLALEKVRELNKLLAARLEEE 273


>gi|30962875|gb|AAH52656.1| Exosome component 7 [Mus musculus]
          Length = 291

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 70/243 (28%), Gaps = 29/243 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R + +   V     GS  VK G T +L     E   P  +     G++ 
Sbjct: 22  LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QI 112
                   +T     R            EI   + R    +S VDL +L          +
Sbjct: 81  FFVDCSANATPEFEGRGG-----DDLGTEIANTLYRIFNNKSSVDLRSLCISPREHCWVL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS--NKFQLSQVLKGHVAAISCGMLC 170
            +D  +++  G    A       AL D            +      L           + 
Sbjct: 136 YVDVLLLECGGNLFDAISIAVKAALFDTRIPRVRVLEDEEGAKDIELSDDPYDCIRLSVE 195

Query: 171 GYP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
             P            +VD    E++         +T  G +  ++    + +   +  F 
Sbjct: 196 NVPCIVTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVG-KGSLDPESIFE 254

Query: 219 MLN 221
           M+ 
Sbjct: 255 MME 257


>gi|198426220|ref|XP_002120565.1| PREDICTED: similar to Exosome complex exonuclease RRP43 (Ribosomal
           RNA-processing protein 43) (Exosome component 8) (p9)
           (Opa-interacting protein 2) [Ciona intestinalis]
          Length = 279

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 89/251 (35%), Gaps = 17/251 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   Q+R+ +L       A+GS LVK G+T ++     E   P      K G I 
Sbjct: 22  IRPDTRTLQQIRKTTLNVGPITTADGSALVKIGNTMVMCGVKAELTQPT-AEEPKKGIIV 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA-LRSVVDLSALGSRQIII-DCDV 118
               +    +         +  Q G ++ +  +I  A L +  DL  +  + + +  CDV
Sbjct: 81  PNLDLPALCSSKFKPGPPNTQAQVG-TKFLDNLIKIANLVNSEDLCIVPDKLVWVLYCDV 139

Query: 119 --IQADGGTRTA----------AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC 166
             +  DG    A          +++   V L++         N+     +    VA+   
Sbjct: 140 TCLNYDGCVIDAAVVALVAALRSVSLPSVTLNEETDTPVTNINEKTPLTINCLPVASSFS 199

Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
                + I D    E+         V  +  +++ V       + ++D     +  +  R
Sbjct: 200 FFESEHIITDPTLSEEDITSGCLTVVSDEHENLLLVDRPG-GVSITEDQLEICIQRSFKR 258

Query: 227 IADLIKLQKDV 237
             ++ KL K V
Sbjct: 259 TKEVHKLYKAV 269


>gi|308322117|gb|ADO28196.1| exosome complex exonuclease rrp42 [Ictalurus furcatus]
          Length = 291

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 75/263 (28%), Gaps = 34/263 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R + +   V    +GS  V  G T +L     E   P  +     G++ 
Sbjct: 22  LRVDGRGCEDYRHMEIETDVVSNTDGSAKVSLGQTDILVGIKAEIGRPRPMV-PDEGYLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QI 112
                   +T     R            E+   + +    R  +DL +L          +
Sbjct: 81  FFVDCSANATPEFEGRGGE-----ELGVELSNNLYKVFNNRHSLDLRSLCISPGESCWVL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ--VLKGHVAAISCGMLC 170
            +D  ++Q DG    A       AL +        S   +  +   L           + 
Sbjct: 136 YVDVLLLQCDGNLFDAMSIAIKAALFNTRIPKVHISEDEEGGKEIELSDDPYDCMRLNVE 195

Query: 171 GYP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
             P            +VD    E S         +T  G +  V+      +   D  F 
Sbjct: 196 NVPCIVTLCKIGHRHVVDATLQEKSCSVASLLISVTHKGTVTCVRKLG-GGSLDPDSIFE 254

Query: 219 MLNLAKDRIADLIK-----LQKD 236
           M    K     L       LQK+
Sbjct: 255 MTETGKRVGKMLHVPLMELLQKE 277


>gi|261204769|ref|XP_002629598.1| 3' exoribonuclease [Ajellomyces dermatitidis SLH14081]
 gi|239587383|gb|EEQ70026.1| 3' exoribonuclease [Ajellomyces dermatitidis SLH14081]
          Length = 350

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 88/289 (30%), Gaps = 64/289 (22%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLL------------------TTATLEEKV 47
           R+ +++R+I L   +   A GS  ++F  + +L                   +    + +
Sbjct: 41  RKPDELRKIFLKTGLIPSASGSAYLEFQPSAILHRSKSKTLIPPSSSLKLTCSVHGPKPL 100

Query: 48  PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL 107
           P     + +  ++      P ++    +R         R  ++   +  ALR V+     
Sbjct: 101 PRSAPFSPNLLLSTHVKFAPFAS---RRRRGYIRDVNER--DLGVHLETALRGVIIGERW 155

Query: 108 GSRQIIIDCDVIQA------------------DG----GTRTAAITGAWVALHDCLQHME 145
               + I   V++                   DG          IT A  A+ D      
Sbjct: 156 PKSGLDITVTVLEGEDDRWWGDVLSSGPLGGIDGWGLMNVLAGCITVASAAIADARIDCM 215

Query: 146 DCSNKFQLSQVLKGHV-----AAISCGMLCGY-PIVDLDYGEDSTIDVDANFV--MTDSG 197
           D       + V    V     A  S     G   ++D D  E   + V A  V  M    
Sbjct: 216 DLITGGIAAFVENPDVDTSERANTSSKKGRGQSLVLDPDPSE-HQVIVSACVVGYMPSRD 274

Query: 198 HIVEV----------QGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            I E+           GS   +   +    A ++ A+   A L +  ++
Sbjct: 275 EITELWLKGDTSNISAGSQSPSASHEALIDAAVDAARGAQAVLAEAVRE 323


>gi|294889655|ref|XP_002772906.1| Exosome complex exonuclease RRP46, putative [Perkinsus marinus ATCC
           50983]
 gi|239877486|gb|EER04722.1| Exosome complex exonuclease RRP46, putative [Perkinsus marinus ATCC
           50983]
          Length = 258

 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 33/189 (17%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA--TLEEKVPMWIRNTKHGWI 59
           R+ GR+ + MR  +L   +    +GS  + FGDT +L      +E + P+ +    +   
Sbjct: 26  RIDGRECSMMRPPTLELGLLPQKDGSARLGFGDTEVLVGVNGPVENRFPLGVSTPGY--- 82

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ-IIIDCDV 118
                  P     R  R +       +S E Q  + + + +++D   L     + +  +V
Sbjct: 83  -------PLDVTVR--RASGMPTAEDKSVEYQ--LTKFINTIIDAHLLPGNTMVTVAVEV 131

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGYPI 174
           +  DG   +     A +AL D              S  L+G   A + G          +
Sbjct: 132 MNNDGSLLSTIFNAAILALLDAG------------SIPLRGTAFAAALGKRYHRGGTQIL 179

Query: 175 VDLDYGEDS 183
           VD D  E+ 
Sbjct: 180 VDPDQSEEE 188


>gi|331237979|ref|XP_003331645.1| hypothetical protein PGTG_12810 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309310635|gb|EFP87226.1| hypothetical protein PGTG_12810 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 311

 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 91/280 (32%), Gaps = 61/280 (21%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R E  +R +++   +   ++GS    FGD   L   T   +V   IR+ K     
Sbjct: 4   MRSDSRTEADIRSLTMRMSILSRSDGSAQFSFGDLKALGAVTGPAEV--RIRDEKPTEAF 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +  ++P             G  G  ++ +   I      ++ L       I I+   + 
Sbjct: 62  VDVIVVPVC-----------GLPGPPTKSLAHSIKSFFTPLILLKKYPRSLIQINLQTLS 110

Query: 121 ------ADG---GTR------------------TAAITGAWVALHDCLQHMEDCSNKFQL 153
                  +G   GT                    A I  A +AL D    M  C+    L
Sbjct: 111 KPSDRWTNGFTTGTLEPSATVPLFEETQSVSEKAALINAASLALLDAGVGMRGCAFAVGL 170

Query: 154 SQVLKGHVAA---ISCGMLCGYPIVDLDYGEDSTIDVDANFV----------MTDSGHIV 200
           + +    V+        +     ++D    E+S+     + V           TDSG  V
Sbjct: 171 AILPPSAVSPNHNNPQALESDLIVLDPSPTEESSAKS-LHLVGFHFGHGFNTTTDSG--V 227

Query: 201 EVQGS----AERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           E+ G+        +FS D    +L LA      ++   + 
Sbjct: 228 EI-GTVALCESNGSFSYDQLQTVLKLASLATQQILAFVRQ 266


>gi|158284969|ref|XP_308011.4| AGAP002177-PA [Anopheles gambiae str. PEST]
 gi|157020848|gb|EAA03766.4| AGAP002177-PA [Anopheles gambiae str. PEST]
          Length = 234

 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 81/230 (35%), Gaps = 32/230 (13%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R +     V   ++ S  +  G T ++  A    +V      +++  +  +Y       
Sbjct: 15  LRRMVCETNVLSRSDCSAALSQGATQVMVAANGPAEVKFKNAESENCHLEVQYR------ 68

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
                  + +G++  + + ++ +I R+   VV   A     + I    +   GG    +I
Sbjct: 69  -------SNAGQEDIQHRLMESLIKRSFVRVVATPAFCRSAVYIYVQEMTDRGGLLACSI 121

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLDYGEDSTIDVDA 189
             + +AL                   L   VAA+ C M   G  I+D D+ +        
Sbjct: 122 NASCLAL-------------ITSGVELNFTVAAVHCIMTEDGAMILDPDHKQLKLARSSF 168

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL---IKLQKD 236
            FV    G       S    +F+ + +  ++++ +  +  +    + Q+ 
Sbjct: 169 TFVFDSIGKNTVT--SYVHGSFTFEEYEQVVSVCRKAVEKIFDFYRKQRA 216


>gi|332141239|ref|YP_004426977.1| polyribonucleotide nucleotidyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327551261|gb|AEA97979.1| polyribonucleotide nucleotidyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 344

 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 77/228 (33%), Gaps = 27/228 (11%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   V  + A  + L    DT +L T   +++      +     +T  Y     + G 
Sbjct: 15  VTLETGVIARQATAAVLASMDDTSVLVTVVGKKEAKP---DQDFFPLTVNYQEKAYAAGK 71

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 KRE   GR         R+I R +R +         Q+++       D  T   
Sbjct: 72  IPGGFFKRE---GRPSEGETLTARLIDRPIRPLFPEGFKNEVQVVVTVMSANPDIPTDII 128

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++ G   AL                     G + A   G   G  I++    E +  ++D
Sbjct: 129 SMIGTSAALAISGI-------------PFNGPIGAARVGFSNGEYILNTRAEEQAESELD 175

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                T+ G ++ V+  +E    S++     +    +++  ++    +
Sbjct: 176 LVVAGTE-GAVLMVE--SEADVLSEETMLGAVMFGHEQLQTVVSAVNE 220


>gi|284794093|pdb|3KRN|A Chain A, Crystal Structure Of C. Elegans Cell-Death-Related
           Nuclease 5(Crn-5)
 gi|284794094|pdb|3KRN|B Chain B, Crystal Structure Of C. Elegans Cell-Death-Related
           Nuclease 5(Crn-5)
          Length = 222

 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 73/239 (30%), Gaps = 33/239 (13%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
           GR    +RE+       K A+GS     G T +  + +    V     + +   +   Y 
Sbjct: 3   GR----LREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISY- 57

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R+     K   ++            +I   L + ++L       I +    IQ DG 
Sbjct: 58  ---RANCGDNKFNVLNN-----------IIHSTLSNAINLELFPHTTISVTVHGIQDDGS 103

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               AI GA  AL D                  +     +    +    I+D    +++ 
Sbjct: 104 MGAVAINGACFALLD-------------NGMPFETVFCGVLIVRVKDELIIDPTAKQEAA 150

Query: 185 IDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                 F V   S    EV        +      A  +LA+   + +    K V+  ++
Sbjct: 151 STGRVLFSVCKGSDGHPEVCAMDAIGHWDFIQLEAAWSLAQPSASAIFDFYKTVMKRKL 209


>gi|17531759|ref|NP_496284.1| Cell-death-Related Nuclease family member (crn-5) [Caenorhabditis
           elegans]
 gi|3874232|emb|CAA90109.1| C. elegans protein C14A4.5, confirmed by transcript evidence
           [Caenorhabditis elegans]
 gi|31747259|gb|AAP57301.1| cell death-related nuclease 5 [Caenorhabditis elegans]
          Length = 214

 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 73/239 (30%), Gaps = 33/239 (13%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
           GR    +RE+       K A+GS     G T +  + +    V     + +   +   Y 
Sbjct: 3   GR----LREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISY- 57

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R+     K   ++            +I   L + ++L       I +    IQ DG 
Sbjct: 58  ---RANCGDNKFNVLNN-----------IIHSTLSNAINLELFPHTTISVTVHGIQDDGS 103

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDST 184
               AI GA  AL D                  +     +    +    I+D    +++ 
Sbjct: 104 MGAVAINGACFALLD-------------NGMPFETVFCGVLIVRVKDELIIDPTAKQEAA 150

Query: 185 IDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                 F V   S    EV        +      A  +LA+   + +    K V+  ++
Sbjct: 151 STGRVLFSVCKGSDGHPEVCAMDAIGHWDFIQLEAAWSLAQPSASAIFDFYKTVMKRKL 209


>gi|67609743|ref|XP_667059.1| polymyositis/scleroderma autoantigen 1 [Cryptosporidium hominis
           TU502]
 gi|54658150|gb|EAL36827.1| polymyositis/scleroderma autoantigen 1 [Cryptosporidium hominis]
          Length = 408

 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 90/277 (32%), Gaps = 43/277 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR  N+ R + +    +    G   V  G TH+L+    E   P   R+++ G+I+
Sbjct: 13  LRLDGRTMNEYRNVKINLNKNY---GEVEVNIGRTHVLSVVKSELVAPSQERSSE-GFIS 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQI 112
               + P S        A    +     EI   I R L+    +D   L          +
Sbjct: 69  FTVDIGPLSINPTS--HAFRHNRTTLGTEIANYIERTLKETGAIDTEILCILSGVCVWSV 126

Query: 113 IIDCDVIQADGGTRTAAITGAWVAL---------HDCL--------------QHMEDCSN 149
             +  V+  DG    A +      L          D                Q +E+   
Sbjct: 127 KCEIHVLFDDGNLFDACLMATLSGLKHYRYNEIDVDSFLKKSKCEGLEERDYQRLENTIR 186

Query: 150 KFQLSQV-LKGHVAAISCGMLCGYP----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
           K ++    +     +IS G + G      IVD +  E+S  D   +  + D   +  +  
Sbjct: 187 KLEMIPFNVHHFPLSISIGYINGKEGLSYIVDPNSDEESISDTIIHISINDKQEVCGISK 246

Query: 205 SAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
               A  S +     + +A      L +  K     E
Sbjct: 247 FG-GAKLSLNQINFAIQIATIHSEKLHQEFKKAFDGE 282


>gi|226291910|gb|EEH47338.1| 3' exoribonuclease family protein [Paracoccidioides brasiliensis
           Pb18]
          Length = 350

 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 86/290 (29%), Gaps = 66/290 (22%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDT-------------------HLLTTATLEEK 46
           R+ +++R+I L   +   A GS  ++F  T                    +       + 
Sbjct: 41  RKPDELRKIFLKTGLIPSASGSAYLEF-QTSTNLPRSKLKTLIRPSSSLKITCAVHGPKP 99

Query: 47  VPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA 106
           +P     + +  ++      P +T    +R         R  ++   +  AL+ V+    
Sbjct: 100 LPRSAPFSPNLLLSTHVKFAPFAT---RRRRGYIRDVNER--DLGVHLETALKGVIIGER 154

Query: 107 LGSRQIIIDCDVIQA------------------DG----GTRTAAITGAWVALHDCLQHM 144
                + I   +++                   DG          IT A  A+ D     
Sbjct: 155 WPKSGLDITVTILEGEDDRWWGDDLSSSPLGGIDGWGLMNVLAGCITVASAAIVDARIDC 214

Query: 145 EDCSNKFQLSQVLKGHVAAISCGMLCGY------PIVDLDYGEDSTIDVDANFV--MTDS 196
            D       + V   H+                  ++D D  E       A  V  M+  
Sbjct: 215 VDLITGGVAAFVENPHIEVSGEPEETNEKGRDRRLVLDPDPSE-HQAIAAACVVGYMSSR 273

Query: 197 GHIVEV---------QGSAERATFSQDHF-FAMLNLAKDRIADLIKLQKD 236
             I E+         QG +++ +   +      +N A+   A L++  ++
Sbjct: 274 DEITELWLKGDTSDFQGGSQKGSLGHEALIDGAVNAARGTQAVLMEASRE 323


>gi|308502001|ref|XP_003113185.1| CRE-EXOS-9 protein [Caenorhabditis remanei]
 gi|308265486|gb|EFP09439.1| CRE-EXOS-9 protein [Caenorhabditis remanei]
          Length = 432

 Score = 72.8 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 82/253 (32%), Gaps = 32/253 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R   R   + R++ L       +E G+ +   G+T ++   + +   P  +R    G I 
Sbjct: 23  RFDFRSLEEFRDVKLVVG----SEVGTAICTIGNTKVMAAVSAQIAEPSSMR-PNKGVIN 77

Query: 61  AEYGMLPRS-TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR------QII 113
            +  + P +   N   R    G +  R  E+  +I  +    +D+ +L  R      ++ 
Sbjct: 78  IDVDLSPMANVANEHDRLGSKGMELIRLLEL--IIRDS--RCIDVESLCIRAGSEIWKVR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS----------NKFQLSQVLKGHVAA 163
           +D  ++  DG     A   A  AL    +                 K  +   +      
Sbjct: 134 VDVRILDEDGSLLDCACLAAITALQHFKRPNVSLEAHHTLIYSEYEKAPVPLNIYHMPIC 193

Query: 164 ISCGMLCGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVEV-QGSAERATFSQDHFFAML 220
            + G+L      ++D    E + +D            +  + Q +      +       +
Sbjct: 194 TTIGLLDKGQMVVIDPTEKEAACLDGSIVVACNKRREVCALHQST--NLVLTTKQIERCV 251

Query: 221 NLAKDRIADLIKL 233
            LA  R   L  +
Sbjct: 252 KLAMARAEALTAV 264


>gi|312372348|gb|EFR20329.1| hypothetical protein AND_20269 [Anopheles darlingi]
          Length = 243

 Score = 72.8 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 51/125 (40%), Gaps = 12/125 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+  ++R  + +  V + A+GS + K G+T ++     E   P  +     G++ 
Sbjct: 55  IRPDGRELEELRPTAFSFGVIQSADGSAIAKIGNTTVVCGIKAELAAPKAV-EPNQGYLI 113

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSAL---GSRQIII- 114
               + P S+ +        G     +Q   + +         +DL+ L     + + + 
Sbjct: 114 PNVEISPVSSPSYR-----PGPPSEEAQVYSQSLADVFSKARCIDLAQLCVEPGKLVWVL 168

Query: 115 DCDVI 119
            CD++
Sbjct: 169 YCDLV 173


>gi|224372889|ref|YP_002607261.1| polyribonucleotide nucleotidyltransferase [Nautilia profundicola
           AmH]
 gi|223588442|gb|ACM92178.1| polyribonucleotide nucleotidyltransferase [Nautilia profundicola
           AmH]
          Length = 451

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 10/113 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWI------RNT 54
           +R  GR+ +++R IS+   +   A GSCL   G T  L  AT    +   +      +  
Sbjct: 341 IRADGRKLDEIRPISIETNLLPRAHGSCLFTRGQTQALAVATRGGDMDAQVYGNLTDKEE 400

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL 107
           K       Y     S G   +     G    R      +  RA+  ++DLS +
Sbjct: 401 KLEKFMLHYNFPAFSVGEAER----LGPPSRRELGHGNLAKRAIEPLLDLSLM 449



 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 69/217 (31%), Gaps = 46/217 (21%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG----NRVK 75
           V+K A  S   + G+T +L T T     P  +       +  +Y     + G      VK
Sbjct: 21  VAKQANSSVWFEDGNTVMLATLTYN---PDEMVEEDFVPLVVQYVEKAYAVGKIPAGFVK 77

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           RE    + G       R++ R+LR +      G   + +    + AD     + +  A +
Sbjct: 78  REQ---KPGDFETLTARIVDRSLRPLFPKE-YGYNTV-LTVMALSAD---EDSDLQTAAM 129

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD--LDYGEDSTIDVDANFVM 193
                  ++ D              V  +    + G  I++  L   E    + D N  +
Sbjct: 130 NAAAACMYLSDL--------PFAKMVYGVRATRIKGELIINPTLSQLE----EGDFNLFV 177

Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           T                 ++D    M+  A     ++
Sbjct: 178 TG----------------TKDELL-MIEFASQGQEEI 197


>gi|195388798|ref|XP_002053065.1| GJ23674 [Drosophila virilis]
 gi|194151151|gb|EDW66585.1| GJ23674 [Drosophila virilis]
          Length = 240

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 70/226 (30%), Gaps = 31/226 (13%)

Query: 9   NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
           +++RE+          +GS +   G T ++       +V     + +  ++   Y     
Sbjct: 12  DKLREMHCKFNALSRCDGSVMYSQGATVVIAAVLGPIEVKTQNLSIEGSYLECNY----- 66

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 + +A   +   R +E    I   L   +   A    ++ +    ++  G     
Sbjct: 67  ------RPKAGLPQVKERIREAA--IRDVLELALLSEAYPRAKMSVQVQELEDRGS---- 114

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDSTIDV 187
                     D       C         LK   AA+ C +   G  ++D D  E      
Sbjct: 115 ---------IDACALNAACLAMLIGGLPLKYSFAAVHCIINEQGEFVLDPDQNETLHQQA 165

Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
              F      G+++ VQ    +  F    F  +  + +   A++ +
Sbjct: 166 SFTFAFDSVDGNLLLVQ---TKGAFKIAQFNDIECICRAASAEIFE 208


>gi|195170324|ref|XP_002025963.1| GL10119 [Drosophila persimilis]
 gi|194110827|gb|EDW32870.1| GL10119 [Drosophila persimilis]
          Length = 296

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 79/266 (29%), Gaps = 32/266 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R  GR     R + L   +   A GS  ++  +T +L     E  VP  +   + G + 
Sbjct: 22  FRCDGRSRRDYRPMELETGLVSNASGSARLRLANTDILVGIKTEIDVPDPL-TPEFGKLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVD---LSALGSRQ---I 112
                   +T     R          +QE+   +  A  S    D   L  +  +Q   +
Sbjct: 81  FFVDCSANATPEFEGRGG-----SDLAQELVLALENAYESPLAFDYRTLCLIPGQQCWKL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHME-------DCSNKFQLSQV-------LK 158
            ID  +++  G    A    A  ALH+               ++              + 
Sbjct: 136 YIDILILECGGNLHDAVSLAAKAALHNTKLPRVTASLLDAGVTDLIISDNPYDCTRLTID 195

Query: 159 GHVAAISCGMLCGYPIVDLDYGEDST---IDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
                ++   +  Y +VD    E++      V +  +      +     +       +D 
Sbjct: 196 TVPLLVTVCKIGDYCLVDPSAEEEACSTVSIVVSVSMRNGEAFLSGSHMTG-GGAMHRDT 254

Query: 216 FFAMLNLAKDRIADLIKLQKDVISNE 241
               LNL       L  L   V+  E
Sbjct: 255 MRNCLNLGLSIGEQLNTLLAKVLKQE 280


>gi|195383888|ref|XP_002050657.1| GJ22278 [Drosophila virilis]
 gi|194145454|gb|EDW61850.1| GJ22278 [Drosophila virilis]
          Length = 296

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 81/265 (30%), Gaps = 30/265 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R  GR     R + L   +   A GS  ++  +T +L     E  VP  +   + G + 
Sbjct: 22  FRCDGRSRRDYRPMELETGLVSNASGSARLRLANTDILVGVKTEIDVPNPL-TPQFGKLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVD---LSALGSRQ---I 112
                   +T     R          +QE+   +  A  S    D   L  +  +Q   +
Sbjct: 81  FFVDCSANATPEFEGRGG-----SDLAQELILSLQNAYESPFAFDYRTLCLIPGQQCWKL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHME-------DCSNKFQLSQV-------LK 158
            ID  +++  G    A    A  AL++               ++              + 
Sbjct: 136 YIDILILECGGNLYDAVSLAAKAALYNTKLPRVTATLLDAGVTDLIISDNPYDCTRIGID 195

Query: 159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAE--RATFSQDHF 216
                ++   +  Y +VD    E+    V     ++   +   + G+      +  +D  
Sbjct: 196 AVPLLVTVCKIGDYCLVDPTAEEEVCSTVSMVVSVSMRDNEAYLSGTHMTGGGSMHRDTM 255

Query: 217 FAMLNLAKDRIADLIKLQKDVISNE 241
              + L       L  L   ++ +E
Sbjct: 256 LNSIQLGLSIGEQLNSLLVKMLKSE 280


>gi|320169517|gb|EFW46416.1| exosome component 7 [Capsaspora owczarzaki ATCC 30864]
          Length = 294

 Score = 72.4 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 75/262 (28%), Gaps = 31/262 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59
           +R  GR     R  ++   +     GS  V+ G T +L     E   P   +       +
Sbjct: 21  LRSDGRLRTDYRPFTVESGIVSNTSGSARVRLGLTDVLVGVKAEIGEPDQAKPTQGRFEV 80

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR------QII 113
           T ++     S                   E+   I R L+  VDLSAL          I 
Sbjct: 81  TVDFSSTSASAAAFDD--------DNTETELASAIARTLKG-VDLSALCIVPGEQCWVIY 131

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN-------KFQLSQV-------LKG 159
           ID  ++ A G            AL +      + S+                     ++ 
Sbjct: 132 IDALILVAAGNAYDVLSLAVRAALANTRIPKVEVSDDGHGRVELEVSDDPHHVTELDIRA 191

Query: 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
               ++   +  + IVD    E+S      +  +   G    V   A          F  
Sbjct: 192 VPVIVTLSKIGAFHIVDATIEEESCAKSRVHVAVDSKGAFCMVTK-ASAGGIEPQLLFDA 250

Query: 220 LNLAKDRIADLIKLQKDVISNE 241
           L  AK     L+   +  +  E
Sbjct: 251 LESAKQVGQHLLSQLEATLKQE 272


>gi|315655673|ref|ZP_07908571.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii ATCC
           51333]
 gi|315489737|gb|EFU79364.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii ATCC
           51333]
          Length = 830

 Score = 72.4 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 80/242 (33%), Gaps = 16/242 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK-----H 56
           R+ GR    +R +S    V     GS L + G+T +L   T    + M  +        H
Sbjct: 385 RIDGRGLKDIRSLSAEVEVLPRVHGSALFQRGETQVL-GVTTLNMLRMEQQLDNLSPVTH 443

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P  TG   +  +   R+ G       +   AL  V+         I    
Sbjct: 444 KRYMHQYNFPPYCTGETGRVGSPKRREIGHGH----LAEMALEPVIPAREEFPYAIRQVS 499

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +++ ++G +   ++  + ++L +    +        +  + +               + D
Sbjct: 500 EIMGSNGSSSMGSVCASTLSLLNAGVPLRAPIAGIAMGLMSEPGENGTQFAT-----LTD 554

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    I  +Q   +      D     L  A+D    ++ +   
Sbjct: 555 ILGAEDAFGDMDFKVAGTQDF-ITALQLDTKLDGIPADVLKGALGQARDARLKILDVMHA 613

Query: 237 VI 238
            I
Sbjct: 614 AI 615



 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 80/245 (32%), Gaps = 47/245 (19%)

Query: 12  REISLTRRVS-KYAEGSCLVKF-GDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGM 65
           R +     +  + A GS +V   G+T +    T+    +++   +             G 
Sbjct: 59  RVLRFETGLLAQQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQYAAGR 118

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR G  +    R+I R LR           Q++     I  D   
Sbjct: 119 IP---GSFFRRE---GRPGTEAILAARLIDRPLRPAFVKGLRNEVQVVDTVLSIHPDHAY 172

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE---- 181
              AI  + +A                      G +      ++ G  +    Y E    
Sbjct: 173 DVVAINASSMATQLAGL-------------PFSGPIGGTRLALIDGQWVAFPTYPEMEQS 219

Query: 182 ------------DSTIDVDANFVMTDSGH----IVEVQGSAERATFSQDHFFAMLNLAKD 225
                       + T + D   +M ++G        +Q   ++A  ++D   + L+ AK 
Sbjct: 220 TFNMVIAGRVVNEGTPEEDVAIMMVEAGGGEYAWDLIQ-EGKQAP-TEDVVASALDAAKP 277

Query: 226 RIADL 230
            I +L
Sbjct: 278 FIKEL 282


>gi|328853860|gb|EGG02996.1| hypothetical protein MELLADRAFT_109732 [Melampsora larici-populina
           98AG31]
          Length = 319

 Score = 72.4 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 90/285 (31%), Gaps = 61/285 (21%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R    +R ++++      A+GSC   FGD  +L   T   +V +W    KH   T 
Sbjct: 5   RSDARTNLDIRPLTISLSTLSRADGSCNFAFGDLKVLGAMTGPAEVKVWDEKPKHA--TV 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI-- 119
           E  +LP S+         S +   +S      I   +  ++ L       I I+   +  
Sbjct: 63  EVNVLPISSL-----PGPSSKSSAQS------IKSFISPIIYLEQYPRSLIQINLQTLSK 111

Query: 120 ------------------QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV 161
                                   R A +  + +AL D    M        ++ V    V
Sbjct: 112 PSERWSSTRKPSRLGFEENESISERAALMNASSIALLDGGVGMSGVGIAVAVAIVKSELV 171

Query: 162 AAISCGMLCGY----------PIVDLDYGEDSTIDVDANFVM-------TDSGHIVEVQG 204
             I  G                ++D    E++      + +        T S  I++   
Sbjct: 172 QQI--GEDEDRMKEDEDQEWVILLDPSPNEEAQA-TSLHLIGYQFGSHPTPSNPIIDNVR 228

Query: 205 SAER--------ATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
            +E          +F Q     +  +++  IA +  L +  + ++
Sbjct: 229 QSEPTLCFCESYGSFDQTQLKGVFEVSQTGIAQIYSLIRTSLEHQ 273


>gi|298345251|ref|YP_003717938.1| polynucleotide phosphorylase/polyadenylase [Mobiluncus curtisii
           ATCC 43063]
 gi|315656413|ref|ZP_07909302.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|298235312|gb|ADI66444.1| polynucleotide phosphorylase/polyadenylase [Mobiluncus curtisii
           ATCC 43063]
 gi|315492972|gb|EFU82574.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 830

 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 80/242 (33%), Gaps = 16/242 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK-----H 56
           R+ GR    +R +S    V     GS L + G+T +L   T    + M  +        H
Sbjct: 385 RIDGRGLKDIRSLSAEVEVLPRVHGSALFQRGETQVL-GVTTLNMLRMEQQLDNLSPVTH 443

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P  TG   +  +   R+ G       +   AL  V+         I    
Sbjct: 444 KRYMHQYNFPPYCTGETGRVGSPKRREIGHGH----LAEMALEPVIPAREEFPYAIRQVS 499

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +++ ++G +   ++  + ++L +    +        +  + +               + D
Sbjct: 500 EIMGSNGSSSMGSVCASTLSLLNAGVPLRAPIAGIAMGLMSEPGENGTQFAT-----LTD 554

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    I  +Q   +      D     L  A+D    ++ +   
Sbjct: 555 ILGAEDAFGDMDFKVAGTQDF-ITALQLDTKLDGIPADVLKGALGQARDARLKILDVMHA 613

Query: 237 VI 238
            I
Sbjct: 614 AI 615



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 80/245 (32%), Gaps = 47/245 (19%)

Query: 12  REISLTRRVS-KYAEGSCLVKF-GDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGM 65
           R +     +  + A GS +V   G+T +    T+    +++   +             G 
Sbjct: 59  RVLRFETGLLAQQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQYAAGR 118

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR G  +    R+I R LR           Q++     I  D   
Sbjct: 119 IP---GSFFRRE---GRPGTEAILAARLIDRPLRPAFVKGLRNEVQVVDTVLSIHPDHAY 172

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE---- 181
              AI  + +A                      G +      ++ G  +    Y E    
Sbjct: 173 DVVAINASSMATQLAGL-------------PFSGPIGGTRLALIDGQWVAFPTYPEMEQS 219

Query: 182 ------------DSTIDVDANFVMTDSGH----IVEVQGSAERATFSQDHFFAMLNLAKD 225
                       + T + D   +M ++G        +Q   ++A  ++D   + L+ AK 
Sbjct: 220 TFNMVIAGRVVNEGTPEEDVAIMMVEAGGGEYAWDLIQ-EGKQAP-TEDVVASALDAAKP 277

Query: 226 RIADL 230
            I +L
Sbjct: 278 FIKEL 282


>gi|304390809|ref|ZP_07372761.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304325692|gb|EFL92938.1| polyribonucleotide nucleotidyltransferase [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 830

 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 80/242 (33%), Gaps = 16/242 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK-----H 56
           R+ GR    +R +S    V     GS L + G+T +L   T    + M  +        H
Sbjct: 385 RIDGRGLKDIRSLSAEVEVLPRVHGSALFQRGETQVL-GVTTLNMLRMEQQLDNLSPATH 443

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P  TG   +  +   R+ G       +   AL  V+         I    
Sbjct: 444 KRYMHQYNFPPYCTGETGRVGSPKRREIGHGH----LAEMALEPVIPAREEFPYAIRQVS 499

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
           +++ ++G +   ++  + ++L +    +        +  + +               + D
Sbjct: 500 EIMGSNGSSSMGSVCASTLSLLNAGVPLRAPIAGIAMGLMSEPGENGTQFAT-----LTD 554

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +   ED+  D+D     T    I  +Q   +      D     L  A+D    ++ +   
Sbjct: 555 ILGAEDAFGDMDFKVAGTQDF-ITALQLDTKLDGIPADVLKGALGQARDARLKILDVMHA 613

Query: 237 VI 238
            I
Sbjct: 614 AI 615



 Score = 66.3 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 80/245 (32%), Gaps = 47/245 (19%)

Query: 12  REISLTRRVS-KYAEGSCLVKF-GDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGM 65
           R +     +  + A GS +V   G+T +    T+    +++   +             G 
Sbjct: 59  RVLRFETGLLAQQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQYAAGR 118

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR G  +    R+I R LR           Q++     I  D   
Sbjct: 119 IP---GSFFRRE---GRPGTEAILAARLIDRPLRPAFVKGLRNEVQVVDTVLSIHPDHAY 172

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE---- 181
              AI  + +A                      G +      ++ G  +    Y E    
Sbjct: 173 DVVAINASSMATQLAGL-------------PFSGPIGGARLALIDGQWVAFPTYPEMEQS 219

Query: 182 ------------DSTIDVDANFVMTDSGH----IVEVQGSAERATFSQDHFFAMLNLAKD 225
                       + T + D   +M ++G        +Q   ++A  ++D   + L+ AK 
Sbjct: 220 TFNMVIAGRVVNEGTPEEDVAIMMVEAGGGEYAWDLIQ-EGKQAP-TEDVVASALDAAKP 277

Query: 226 RIADL 230
            I +L
Sbjct: 278 FIKEL 282


>gi|297829840|ref|XP_002882802.1| hypothetical protein ARALYDRAFT_341414 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328642|gb|EFH59061.1| hypothetical protein ARALYDRAFT_341414 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 294

 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 85/252 (33%), Gaps = 26/252 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R++++         GS  V+ G TH++   T +  V  +      G  +
Sbjct: 27  LRVDGRGLYDYRKLTIKFG---KEYGSSEVQLGQTHVMAFVTAQL-VQPYKDRPNEGSFS 82

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALG---SRQIIID 115
                 P +  +           G  + E+ R+I RALR   VVD  +L     + +   
Sbjct: 83  IFTEFSPMADPS-----FEPVHPGESAVELGRIIDRALRESRVVDTESLCVFAGKLVWNL 137

Query: 116 CDVIQADGGT------RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            D              R     G   +    +   E+      L  ++     A + G  
Sbjct: 138 VDAANIAALAALLTFRRPDCTVGGENSQEVIIHPPEERE---PLPLIIHHLPIAFTFGFF 194

Query: 170 CGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                 ++D    E++ +       +  +G I  +Q   E    +Q      L LA  R 
Sbjct: 195 NKGSILVMDPTVVEEAVMSGRMTVTVNANGDICAIQKPGEEGV-NQSVILHCLRLASSRA 253

Query: 228 ADLIKLQKDVIS 239
           A   K+ ++ + 
Sbjct: 254 AATTKIIREAVE 265


>gi|196004466|ref|XP_002112100.1| hypothetical protein TRIADDRAFT_55798 [Trichoplax adhaerens]
 gi|190585999|gb|EDV26067.1| hypothetical protein TRIADDRAFT_55798 [Trichoplax adhaerens]
          Length = 288

 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 80/262 (30%), Gaps = 31/262 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWIT 60
           R  GR+    R   +   +     GS  ++   T +L     E   P   R NT H    
Sbjct: 23  RADGRRCIDFRRFQIETGIVSNTNGSARLRQYGTDVLVGIKAEIGQPKQERSNTGHLEFY 82

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSAL----GSRQIII 114
            +      +T        + G  G  + ++ + + R     +V+DL +L    G +  ++
Sbjct: 83  VDCS--SYNTTE------IDGHIGDFTTQLTKSLERIYDSENVLDLKSLTIIAGEQVWVL 134

Query: 115 DCD--VIQADGGTRTAAITGAWVALHDCLQH------MEDCSNKFQLSQV-------LKG 159
             D  V++  G            AL++           E                  +  
Sbjct: 135 YIDAVVLECCGNLLDCISIAVKAALYNTRIPGVSVNDEEGVLELEISDDPNDEKKLSIDK 194

Query: 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
               +SC  +    +VD    E+          + D  +I  +Q S    +      F M
Sbjct: 195 VPVIVSCNKIGHRYVVDATQEEECCSSGRLLIAVNDRNNICSLQKSG-TGSLDPSTIFEM 253

Query: 220 LNLAKDRIADLIKLQKDVISNE 241
           +  A+     L +     +  E
Sbjct: 254 IETARQAAVPLNQELLQTLKRE 275


>gi|255085244|ref|XP_002505053.1| predicted protein [Micromonas sp. RCC299]
 gi|226520322|gb|ACO66311.1| predicted protein [Micromonas sp. RCC299]
          Length = 168

 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 57/186 (30%), Gaps = 22/186 (11%)

Query: 11  MREISLTRRVSKYAEGSCLVKFG--DTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
           MR++   R   + AEGS   + G   + ++       +      +     I       P 
Sbjct: 1   MRQMKTERNPLQRAEGSARWEQGTHRSVVMAAVYGPTQTQARKEDVDKLAIEV-CWRPPF 59

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                       G Q     + +R + R L  +V  +      + +   VI ADG     
Sbjct: 60  ------------GLQTPADVDAERALRRTLEQIVLTAKYPRLGLRVVVQVISADGAVEAC 107

Query: 129 AITGAWVALHDCLQHMED--CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
           A+     AL D    M     +    + +++ G  A  + G     P  D    E+    
Sbjct: 108 AMNATCHALMDAGVEMFGTLVAATVAIPKIIDGDTAGDALG-----PCADPTEDEERDAA 162

Query: 187 VDANFV 192
               F 
Sbjct: 163 AVGTFA 168


>gi|268532254|ref|XP_002631255.1| C. briggsae CBR-CRN-5 protein [Caenorhabditis briggsae]
 gi|187036905|emb|CAP23570.1| CBR-CRN-5 protein [Caenorhabditis briggsae AF16]
          Length = 214

 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 66/233 (28%), Gaps = 41/233 (17%)

Query: 5   GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
           GR    +RE+       K A+GS     G T +  + +    V     N +   +   Y 
Sbjct: 3   GR----LREMRCELSFLKNADGSACFSQGSTCIWASCSGPGDVHASKANEEAMTLDISYR 58

Query: 65  ML----PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
                   S                    +  +I   L   ++L       +++    IQ
Sbjct: 59  ANCGDNKFSV-------------------LNNIIQSTLAKAINLELFPHTGLVVTIHGIQ 99

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
            DG     ++ GA  AL D                  +     +    +    I+D    
Sbjct: 100 DDGSMGAVSLNGACFALLD-------------NGMPFETVFCGVLIVRVKDELIIDPTAK 146

Query: 181 EDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           +++       F V   +    EV        +      A  +LA+   + + +
Sbjct: 147 QEAASTGKVLFAVCKGTDGFPEVCSMDVIGNWDYLQLEAAWSLAQPSASAIFE 199


>gi|269219591|ref|ZP_06163445.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269210833|gb|EEZ77173.1| polyribonucleotide nucleotidyltransferase [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 765

 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 93/246 (37%), Gaps = 22/246 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------LEEKVPMWIRNT 54
           +R+ GR   ++R I+    V     GS L + G+T +L   T      +E+++      T
Sbjct: 338 VRMDGRTPVEIRTITAEAGVLPRVHGSALFQRGETQIL-GVTTLNMLKMEQQLDNLSPAT 396

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ--EIQRMIGRALRSVVDLSALGSRQI 112
              +I   Y   P STG   +  +   R+ G     EI      AL S +         I
Sbjct: 397 SRRYIH-HYNFPPYSTGETGRVGSPKRREIGHGHLAEI------ALESQLPGREEFPYAI 449

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
               + + ++G +   ++  + ++L++    ++       +     G V+A   G     
Sbjct: 450 RQVSETMGSNGSSSMGSVCASTLSLYNAGVPLKAPVAGIAM-----GLVSATIDGETKYC 504

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T   ++  +Q   +          A L  A+D    ++ 
Sbjct: 505 TLTDILGAEDALGDMDFKVAGTRE-YVTALQLDTKLDGIPAAVLDAALGQARDARFAILD 563

Query: 233 LQKDVI 238
           L  + I
Sbjct: 564 LITEAI 569



 Score = 65.1 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 73/248 (29%), Gaps = 38/248 (15%)

Query: 12  REISLTRRVS-KYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I     +  + A GS L    D T +    T     +E    +         +   G 
Sbjct: 21  RTIRFETGLLARQANGSALAYLDDDTTVFAATTASKAPKEHFDFFPLTVDVEERSYAAGR 80

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR G  +    R+I R LR           Q++     I  D   
Sbjct: 81  IP---GSFFRRE---GRPGTEAILAARLIDRPLRPAFKKGMRNEVQVVATVMTINPDEAY 134

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A +A                      G +      ++ G  +    + E    
Sbjct: 135 DVLAINAASMATSLAGL-------------PFSGPIGGTRMALIDGQWVAFPRWSELKRA 181

Query: 186 DVDANF---VMTDSGHIVEVQG----------SAERATFSQDHFFAMLNLAKDRIADLIK 232
                    V+ D   I+ V+            A  A  ++    A +  AK  I  L +
Sbjct: 182 TFSMAIAGRVVGDDVAIMMVEAQAPEHADAVIKAGGAKPTEAEVAAGMEAAKPVIRTLCE 241

Query: 233 LQKDVISN 240
            Q  ++  
Sbjct: 242 AQSKLVEE 249


>gi|124487127|ref|NP_001074657.1| exosome complex exonuclease RRP42 [Mus musculus]
 gi|66267444|gb|AAH94932.1| Exosome component 7 [Mus musculus]
 gi|124376042|gb|AAI32364.1| Exosome component 7 [Mus musculus]
 gi|148677125|gb|EDL09072.1| mCG23310, isoform CRA_b [Mus musculus]
 gi|148877509|gb|AAI45676.1| Exosome component 7 [Mus musculus]
          Length = 291

 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 70/243 (28%), Gaps = 29/243 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R + +   V     GS  VK G T +L     E   P  +     G++ 
Sbjct: 22  LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QI 112
                   +T     R            EI   + R    +S VDL +L          +
Sbjct: 81  FFVDCSANATPEFEGRGG-----DDLGTEIANTLYRIFNNKSSVDLRSLCISPREHCWVL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS--NKFQLSQVLKGHVAAISCGMLC 170
            +D  +++  G    A       AL +            +      L           + 
Sbjct: 136 YVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAKDIELSDDPYDCIRLSVE 195

Query: 171 GYP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
             P            +VD    E++         +T  G +  ++    + +   +  F 
Sbjct: 196 NVPCIVTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVG-KGSLDPESIFE 254

Query: 219 MLN 221
           M+ 
Sbjct: 255 MME 257


>gi|239614072|gb|EEQ91059.1| 3' exoribonuclease [Ajellomyces dermatitidis ER-3]
 gi|327353426|gb|EGE82283.1| 3' exoribonuclease [Ajellomyces dermatitidis ATCC 18188]
          Length = 350

 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 87/289 (30%), Gaps = 64/289 (22%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLL------------------TTATLEEKV 47
           R+ +++R+I L   +   A GS  ++F  + +L                   +    + +
Sbjct: 41  RKPDELRKIFLKTGLIPSASGSAYLEFQPSAILHRSKSKTLIPPSSSLKLTCSVHGPKPL 100

Query: 48  PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL 107
           P     + +  ++      P ++    +R         R  ++   +  ALR V+     
Sbjct: 101 PRSAPFSPNLLLSTHVKFAPFAS---RRRRGYIRDVNER--DLGVHLETALRGVIIGERW 155

Query: 108 GSRQIIIDCDVIQA------------------DG----GTRTAAITGAWVALHDCLQHME 145
               + I   V++                   DG          IT A  A+ D      
Sbjct: 156 PKSGLDITVTVLEGEDDRWWGDVLSSGPLGGIDGWGLMNVLAGCITVASAAIADARIDCM 215

Query: 146 DCSNKFQLSQVLKGHV-----AAISCGMLCGY-PIVDLDYGEDSTIDVDANFV--MTDSG 197
           D       + V    V     A  S     G   ++D D  E   + V A  V  M    
Sbjct: 216 DLITGGIAAFVENPDVDTSERANTSSKKGRGQSLVLDPDPSE-HQVIVSACVVGYMPSRD 274

Query: 198 HIVEV----------QGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            I E+           G    +   +    A ++ A+   A L +  ++
Sbjct: 275 EITELWLKGDTSNISAGLQSPSASHEALIDAAVDAARGAQAVLAEAVRE 323


>gi|224031563|gb|ACN34857.1| unknown [Zea mays]
          Length = 149

 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 13/117 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  NQ+R  + T      A GS     GDT +L      +       N +   I  
Sbjct: 7   RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKSGTRKGENPEKASIEV 66

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
            +                +G+ G + +E +  + R L+S+  L+   +    +   V
Sbjct: 67  VWK-------------PKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQV 110


>gi|242003305|ref|XP_002422688.1| Exosome complex exonuclease RRP45, putative [Pediculus humanus
           corporis]
 gi|212505510|gb|EEB09950.1| Exosome complex exonuclease RRP45, putative [Pediculus humanus
           corporis]
          Length = 349

 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 85/261 (32%), Gaps = 32/261 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           RL GR+    R++ +        + G C V  G++ +++    E + P  +R    G   
Sbjct: 23  RLDGRKLEGFRDLKIHFGK----DWGLCYVSLGESKVVSQVKCEIQEPQAVR-PNEGLFF 77

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSRQ------I 112
               +   ++          GR    S  IQR++ + L     +DL +L          I
Sbjct: 78  MNVELSLMASPY-----IEPGRASNLSTHIQRLLDKCLYDSKAIDLESLCIVAEDKVWAI 132

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVA 162
            ID  V+  DG     A   A  AL    +           +   + +  +   L  +  
Sbjct: 133 KIDVHVLNHDGSLVDCASISALAALAHFKRPDVTTDGEEIKVHSTAERDPIPLTLHHYPI 192

Query: 163 AISCGMLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
            +S  +L        D    E+   D +  F +     I  +          +      L
Sbjct: 193 CVSFALLNNSENIFADPTEIEERVSDANLTFGINAYKEICCLHLGGTALIKPKLIMTCSL 252

Query: 221 NLAKDRIADLIKLQKDVISNE 241
             A     ++++L  + I  +
Sbjct: 253 KAAARA-KEVVELINEAIKKD 272


>gi|50305471|ref|XP_452695.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641828|emb|CAH01546.1| KLLA0C11099p [Kluyveromyces lactis]
          Length = 305

 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 68/238 (28%), Gaps = 42/238 (17%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR  +Q R++ +       A G   V  G+T +    + E   P   R    G    
Sbjct: 24  RLDGRSYDQFRDVKIEIG---EAYGDVTVTMGNTKVHCRISCEIAQPYEDR-PFEGLFHI 79

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGS------RQII 113
                P +              G     I RMI +A+R    +D+  L          + 
Sbjct: 80  STETTPMAGAQF----ENGNNTGEEEVLISRMIEKAVRRSGALDVEGLCIIAGSKCWSLR 135

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM----- 168
            D   +  DGG   A+       L    +       +      +      +S G+     
Sbjct: 136 ADVHFLDCDGGLIDASCIAVMAGLLHFKKPDVTVLGERVTVHPIDER-EPVSLGVLHVPI 194

Query: 169 ---------------LCGY-----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
                          + G       I+D    E+   D      +  +  +V++  + 
Sbjct: 195 CVTFSFFNPDDTEENIKGEDNAEISIIDASLKEELLRDGVLTVTLNKNREVVQISKAG 252


>gi|71020931|ref|XP_760696.1| hypothetical protein UM04549.1 [Ustilago maydis 521]
 gi|46100124|gb|EAK85357.1| hypothetical protein UM04549.1 [Ustilago maydis 521]
          Length = 297

 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R  +Q+R I L   +   A GS  V+ GD  L  +     +V    + +    +  
Sbjct: 38  RPDQRSYSQLRPIFLQTHLVPSASGSSYVEIGDLKLACSVFGPRQV-KGRQYSGKAELNV 96

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           E    P S+          G+    S  +  ++ +AL   + L  L    + I   V+Q 
Sbjct: 97  EVKFAPFSSRR----RRRPGKTTE-SAHLSGLLHQALLPSLRLDLLPKASLDIHIMVLQT 151

Query: 122 DG 123
           DG
Sbjct: 152 DG 153


>gi|320591825|gb|EFX04264.1| exosome subunit rrp45 [Grosmannia clavigera kw1407]
          Length = 294

 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 69/224 (30%), Gaps = 33/224 (14%)

Query: 2   RLSGRQENQMREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           RL GR     R I LT       A+    V+ G+T ++  AT E   P +      G   
Sbjct: 24  RLDGRSFEDYRPIDLTLGDEFGVAD----VRIGNTRVVAKATAEVTTP-FSDRPFDGIFN 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSR------QI 112
               + P ++ +       +GR       + R++ + +R    +D  +L          +
Sbjct: 79  IVTELSPMASPS-----FEAGRPSEAEVLLSRILEKTIRRSGALDTESLCLAAGNKCWSV 133

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHD------------CLQHMEDCSNKFQLSQVLKGH 160
            +D  V+  +G    A+      AL                 +         LS +    
Sbjct: 134 RVDVHVMSHEGNLVDASCLAVVAALRHFRKAETSIENGVLTVYTPAEREPVPLSWLHSPF 193

Query: 161 VAAISCGMLCGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVEV 202
               S          ++D    E+ T        +   G I +V
Sbjct: 194 CVTFSFFEADDTEITLLDASLLEEQTRVSSCTISINRHGEICQV 237


>gi|195128573|ref|XP_002008737.1| GI13661 [Drosophila mojavensis]
 gi|193920346|gb|EDW19213.1| GI13661 [Drosophila mojavensis]
          Length = 329

 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 87/249 (34%), Gaps = 32/249 (12%)

Query: 12  REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWITAEYGMLPRST 70
           R   +   V     GS  +++G+T L+       + V         G I         +T
Sbjct: 46  RSTFIRAGVLTTVRGSAYMEYGNTKLMAIVAPPRELVRSSAHRVSMGVINCYVNFAAFAT 105

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+    E+V      R + +  M+ +AL  +V  +   + Q+ I   ++  DG   + AI
Sbjct: 106 GDL---ESVP----EREKHLGSMLTKALEPLVCRNEFLNFQLDIRVLILDDDGCLLSTAI 158

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC--------GYPIV------- 175
               VAL +C     D       + + +G+V       +         G  ++       
Sbjct: 159 NCCGVALIECGISTYDLIT-ASTACIYRGYVFINPTAKVEELLWQHRGGNALLGSSSASS 217

Query: 176 --DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
             D D  E   +    N  M +   + + Q   +      + +  +L+   +    L  L
Sbjct: 218 VKDNDIQEHGLL---INASMDNFEQLAQCQ---QCGYLKPETYVRLLDYTLEINKSLRHL 271

Query: 234 QKDVISNEV 242
            + V+S+ V
Sbjct: 272 IRRVLSDRV 280


>gi|328862357|gb|EGG11458.1| hypothetical protein MELLADRAFT_70820 [Melampsora larici-populina
           98AG31]
          Length = 292

 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 73/225 (32%), Gaps = 24/225 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R S R   Q+R I +       + GS LV  G+T +L     E   P ++ N   G+I 
Sbjct: 51  IRSSVR---QIRLIKINNNSISTSNGSSLVSIGNTSVLCGIRFEVSEPNFM-NPNQGYII 106

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--LRS---VVDLSALGSRQIIID 115
               +    +      +     Q   +Q ++ ++  +  +     V+    L    I ID
Sbjct: 107 PNIEIGSLCSSKFKPNQINEQSQTILTQ-LKMILKSSEIIEPSSLVIQPEKL-VWVIYID 164

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQH------------MEDCSNKFQLSQVLKGHVAA 163
              +  DG    A+I     AL    +             + D +    +   L   +  
Sbjct: 165 VICLSNDGNVLDASIISITQALQTAKRPQVEFDIETNEVILLDPNFFEPIPIPLNHTIHP 224

Query: 164 ISCGMLCG-YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207
            +  +      +VD    E+         V+     +  +  S E
Sbjct: 225 FTFSIFEKREWLVDPTLFEEDHSKGSVTVVLDSKKKLRYLLVSGE 269


>gi|195020230|ref|XP_001985151.1| GH16904 [Drosophila grimshawi]
 gi|193898633|gb|EDV97499.1| GH16904 [Drosophila grimshawi]
          Length = 331

 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 12/146 (8%)

Query: 7   QENQM----REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWITA 61
           +  ++    R   +   V     GS  +++G+T ++       + V         G +  
Sbjct: 37  KPTELVVAPRSTFIRAGVLTTVRGSAYMEYGNTKMMAIVAPPRELVRSSAGRVNMGVLNC 96

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
                  ++G              R + +  M+ +AL  +V  +   + Q+ I   ++  
Sbjct: 97  YVNFAAFASGELAS-------LPEREKHLGSMLTKALEPLVCRNEFLNFQLDIRVLILDD 149

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDC 147
           DG   + AI    VAL +C     D 
Sbjct: 150 DGCLLSTAINCCGVALVECGISTYDL 175


>gi|321263017|ref|XP_003196227.1| hypothetical Protein CGB_I3550C [Cryptococcus gattii WM276]
 gi|317462702|gb|ADV24440.1| conserved hypothetical protein [Cryptococcus gattii WM276]
          Length = 268

 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 73/244 (29%), Gaps = 28/244 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R + + R I L   +   A GS  ++ G   +  +             +  G +  
Sbjct: 34  RTD-RTDQESRPIFLKTGLISQAHGSGYIEAGGVKIACSVYGPRPK--PPPYSPQGTLNL 90

Query: 62  EYGMLPRSTGNRVK--REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           E    P ++  R    R+                  + L   + L  L    I +   V+
Sbjct: 91  EVKFAPFASDPRRAPLRDTEPLPLSNLLT-------QLLLPTLHLHLLPKSSIDVYLLVL 143

Query: 120 QAD--GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--YPIV 175
           ++D      +A +T A  A+ D    M              G VA++      G    ++
Sbjct: 144 ESDTLTNVLSAGLTVASAAVADAGIEMAGLGVG--------GVVASLGADEKQGKKRVVI 195

Query: 176 DLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
           D    E+   DV      M     +  V  + E      D    M+  A +       + 
Sbjct: 196 DPSLEEEKESDVKVMVGTMPALSKVTNVWLTGEIEV---DEACNMIEQAFEASKQTHSVV 252

Query: 235 KDVI 238
            + +
Sbjct: 253 AEAL 256


>gi|312217389|emb|CBX97337.1| similar to exosome complex endonuclease 2/ribosomal RNA processing
           protein [Leptosphaeria maculans]
          Length = 291

 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 86/262 (32%), Gaps = 33/262 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           +RL  R  +  R + LT       +  G   V+ G T ++   +++   P+  R    G 
Sbjct: 23  IRLDKRAFDAFRPVELTFG-----DEYGVADVQLGKTRVIARISVDVTTPLPERKFD-GI 76

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------R 110
                   P ++          GR       + R++ +A+R    +D  +L         
Sbjct: 77  FQIVSEFSPMASPA-----FEIGRPTDAEVILSRILEKAIRRSNALDTESLCIIAGLKCF 131

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGH 160
            +  D  VI  DGG   A+      AL    +           +     +  +   +   
Sbjct: 132 ALRADVHVIDHDGGLIDASCIAVMAALQHFRRPDVVVEGEKATVLSVRERDPIPLSILHQ 191

Query: 161 VAAISCGMLCGYP-IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
              ++         +VD +  E+     +    M   G + ++      AT +       
Sbjct: 192 PLCVTFSYFEDEIFLVDANLAEERVRQGEVILTMNKHGELCQIAKYG-GATINPLALLNC 250

Query: 220 LNLAKDRIADLIKLQKDVISNE 241
            ++A  ++A+L  L +  +  +
Sbjct: 251 TSIALQKVAELSALIQKRLEED 272


>gi|114052969|ref|NP_001040497.1| exosc7 protein [Bombyx mori]
 gi|95103140|gb|ABF51511.1| exosc7 protein [Bombyx mori]
          Length = 277

 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 62/218 (28%), Gaps = 28/218 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R  GR     R + L   V  +A GS  ++  +T +L     E   P        G I 
Sbjct: 22  FRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTEIDTPK-PDKPDMGKIE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------I 112
                   +T     R   +         I   + RA  S    DL  L   +      +
Sbjct: 81  FLVDGSANATPEFEGRGGENLASS-----ISNTMQRAYHSSQAFDLKQLCIVEGKQCWKL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS--NKFQLSQVLKGHVAA------- 163
            +D  +++  G    A       AL +    +      +   +   L             
Sbjct: 136 YVDILILECGGNWFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSDDPYDFKFLDVG 195

Query: 164 -----ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS 196
                ++   +    +VD    E+S   +     +T +
Sbjct: 196 SAPLLVTLCKIGEKCVVDPSAEEESCSVISLIVGITGN 233


>gi|225680115|gb|EEH18399.1| 3' exoribonuclease family protein [Paracoccidioides brasiliensis
           Pb03]
          Length = 350

 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 86/290 (29%), Gaps = 66/290 (22%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDT-------------------HLLTTATLEEK 46
           R+ +++R+I L   +   A GS  ++F  T                    L       + 
Sbjct: 41  RKPDELRKIFLKTGLIPSASGSAYLEF-QTSTNLPRSKLKTLIPPSSSLKLTCAVHGPKP 99

Query: 47  VPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA 106
           +P     + +  ++      P +T    +R         R  ++   +  AL+ V+    
Sbjct: 100 LPRSAPFSPNLLLSTHVKFAPFAT---RRRRGYIRDVNER--DLGVHLETALKGVIIGER 154

Query: 107 LGSRQIIIDCDVIQA------------------DG----GTRTAAITGAWVALHDCLQHM 144
                + I   +++                   DG          IT A  A+ D     
Sbjct: 155 WPKSGLDITVTILEGEDDRWWGDALSSSPLGGIDGWGLMNVLAGCITVASAAIVDARIDC 214

Query: 145 EDCSNKFQLSQVLKGHVAAISCGMLCGY------PIVDLDYGEDSTIDVDANFV--MTDS 196
            D       + V   H+                  ++D D  E       A  V  M+  
Sbjct: 215 VDLITGGVAAFVENPHIEVSGEPEETNEKGRDRRLVLDPDPSE-HQAIAAACVVGYMSSR 273

Query: 197 GHIVEV---------QGSAERATFSQDHF-FAMLNLAKDRIADLIKLQKD 236
             I E+         QG +++ +   +      +N A+   A L++  ++
Sbjct: 274 DEITELWLKGDTSDFQGGSQKGSLGHEALIDGAVNAARGTQAVLMEASRE 323


>gi|25136928|emb|CAD56698.1| exosome-associated protein 4 [Trypanosoma brucei]
          Length = 227

 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 85/243 (34%), Gaps = 26/243 (10%)

Query: 2   RLSGRQ-ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R  GR+  +++R   +   V   +  S  ++ G T ++      +++    R +  G + 
Sbjct: 3   RSHGRRSPDEVRYPHIVLNVLGQSYSSACIEVGSTRVVCAVHHPQQLIDEYRGS-RGRVA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
                  R+     K E          +++   +   +   V L  +    + +  +++ 
Sbjct: 62  CTVRRSSRA----QKHELAFRADVTPEKDLALALEGVVEQAVVLEKIPQLLVEVVVEILA 117

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
            DGG   A  TG   AL      M D               A  +  +  G  + D    
Sbjct: 118 EDGGLWDAIATGVCAALASGGFEMYDT------------FSACGAALLPDGSIVTDPSAT 165

Query: 181 EDSTIDVDA-NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           E +T    A    M +SG++     +A+R +        ++  A          +K+VIS
Sbjct: 166 EWNTAKATAVTCAMLNSGNMCF---TAQRGSCEPTTALDLVTAALKGTL----ARKNVIS 218

Query: 240 NEV 242
           +++
Sbjct: 219 SQL 221


>gi|308481795|ref|XP_003103102.1| hypothetical protein CRE_25738 [Caenorhabditis remanei]
 gi|308260478|gb|EFP04431.1| hypothetical protein CRE_25738 [Caenorhabditis remanei]
          Length = 256

 Score = 71.7 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 66/195 (33%), Gaps = 27/195 (13%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R     R + +   V    +GS   +FG+T +L            + +         Y  
Sbjct: 31  RSATAFRPLCVKCGVFGAQDGSGYAEFGNTRVLAQMY----EKKHLTSVNKL-----YNF 81

Query: 66  LPRSTGNRVKREA-------VSGRQGG-RSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                G+    EA       + G +   +  E++  +  +L +V+ ++    + I I+  
Sbjct: 82  STGPEGDGKWEEAHAKVTITLKGVENETKVAELRADLTSSLSAVIFINKYPGKVIDIEVT 141

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+  DGG  + AIT   +AL          +           HVA  S G     P    
Sbjct: 142 VLSDDGGVLSTAITAVTLALAHSGIEHMGLTA--------SAHVALKSNGDYITDPST-- 191

Query: 178 DYGEDSTIDVDANFV 192
              ED+   V   FV
Sbjct: 192 SEAEDAIGGVTFAFV 206


>gi|194902325|ref|XP_001980673.1| GG17562 [Drosophila erecta]
 gi|190652376|gb|EDV49631.1| GG17562 [Drosophila erecta]
          Length = 226

 Score = 71.7 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 75/226 (33%), Gaps = 31/226 (13%)

Query: 9   NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
           +++R++          +GS +   G T L+       +V     +    ++   Y     
Sbjct: 6   DKLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNY----- 60

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 + +A   +   R +E    I   L   +   A    ++ +    ++  G     
Sbjct: 61  ------RPKAGLPQVKDRIREAA--IRDVLELALLAEAHPRSKMSVQIQELEDRGSIDAC 112

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDSTIDV 187
           A+  A +A+                   +K   AA+ C +   G  ++D D  E      
Sbjct: 113 ALNCACLAM-------------LIGGLPMKYSFAAVHCIINEQGEYVLDPDQSETLHQRA 159

Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
              FV+    G+++ VQ    +  F    F  +  L +   A++ +
Sbjct: 160 SFTFVLDSVEGNLLLVQ---TKGAFKIAQFNDIECLCRAASAEIFQ 202


>gi|268573886|ref|XP_002641920.1| C. briggsae CBR-EXOS-9 protein [Caenorhabditis briggsae]
 gi|187026401|emb|CAP34537.1| CBR-EXOS-9 protein [Caenorhabditis briggsae AF16]
          Length = 434

 Score = 71.7 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 85/261 (32%), Gaps = 32/261 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R   R   + R + L       +E G+ +   G+T ++   + +   P  +R    G I 
Sbjct: 23  RFDFRGLEEFRGVKLVVG----SEIGTAICTIGNTKVIAAVSAQIAEPSSMR-PHKGVII 77

Query: 61  AEYGMLPRS-TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR------QII 113
            +  + P +   N   R    G +  R  E+  +I  +    +D+ +L  R      ++ 
Sbjct: 78  IDVDLSPMANVSNEHDRLGSKGMELIRLLEL--IIRDS--RCIDVESLCIRAGKEIWKVR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS----------NKFQLSQVLKGHVAA 163
           +D  ++  DG     A   A  AL    +                 K  +   +      
Sbjct: 134 VDVRILDEDGSLLDCACLAAITALQHFKRPNVTLEPHHTLIYSEYEKAPVPLNIYHMPIC 193

Query: 164 ISCGMLCGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVEV-QGSAERATFSQDHFFAML 220
            + G+L      ++D    E + +D            +  + Q +      S       +
Sbjct: 194 TTIGLLDKGQMVVIDPTEKEAACLDGSIVVACNKRREVCALHQST--NLVLSTKQIERCV 251

Query: 221 NLAKDRIADLIKLQKDVISNE 241
            LA  R   L  +  DVI  +
Sbjct: 252 KLAMSRAEALTAVVSDVIKQD 272


>gi|320582164|gb|EFW96382.1| Exosome non-catalytic core component [Pichia angusta DL-1]
          Length = 311

 Score = 71.7 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 75/236 (31%), Gaps = 39/236 (16%)

Query: 1   MRLSGRQENQMREISL--TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           +RL GR+  QMR++ +  +R    YAE    V  G T +    T E   P   R    G 
Sbjct: 23  IRLDGRKLLQMRDVQISVSRDEYGYAE----VSLGKTKVACRVTAEITKPYEDR-PFDGI 77

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGS------R 110
                 + P  +           +Q      I R+I +A+R    +DL +L         
Sbjct: 78  FQISTDISPICSPFFESGLTTGSKQSNDEILISRLIEKAVRRSGALDLESLCIIAGSKCW 137

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQH-MEDCSNKFQLSQVLKGHVAAISC--- 166
            +  D   +  DG     +     VAL    +  ME   N   L    + +   +S    
Sbjct: 138 AVRADLQFLNYDGNFIDISSIAVMVALLHFRKPDMEIDGNNVILFDEDQRNPVPLSILHI 197

Query: 167 -------------------GMLCGYPI-VDLDYGEDSTIDVDANFVMTDSGHIVEV 202
                              G L    I +D +  E+          +  +  + ++
Sbjct: 198 PLCFTFQFYNPNDDEENIKGNLNNELILLDANLIEERLSLGSMTLTINKNKELCQM 253


>gi|39971537|ref|XP_367159.1| hypothetical protein MGG_07084 [Magnaporthe oryzae 70-15]
 gi|145019548|gb|EDK03776.1| hypothetical protein MGG_07084 [Magnaporthe oryzae 70-15]
          Length = 302

 Score = 71.7 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 83/280 (29%), Gaps = 49/280 (17%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKF---------GDT-----HLLTTATLEEKV 47
           R   R  N +R+I L   ++  A GS  ++          G+T      L  T      +
Sbjct: 31  RTRSRPPNAIRKIFLKTGITPSASGSAYLEIENPVVSGKEGETSTSGLKLSCTVHGPRAL 90

Query: 48  PMWIRNTKHGWITAEYGMLPRSTGNRV--KREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105
           P     + H  ++      P +T  R    R++          ++   +  ALR V+   
Sbjct: 91  PRSTPFSPHIILSTHIKYAPFATKQRRGYIRDSTER-------DLSVHLETALRGVIIAD 143

Query: 106 ALGSRQIIIDCDVIQADGGTR-------------------TAAITGAWVALHDCLQHMED 146
                 + +   VI+ D   R                   +  IT A  AL D      D
Sbjct: 144 RWPKSGVDVIVSVIEGDQDRRLPLQDSGSGEEAWSTMSVLSGCITVASAALADAGIDCVD 203

Query: 147 CSNKFQLSQVLKGHVAAISCGMLCGYPIVDL-DYGEDSTIDVDANFVMTDSGHIVEV--- 202
                  + V      A S     G  +VD      D  +       + +   +  +   
Sbjct: 204 MVAGGVAALVRDDSDGAKSV--EGGSIVVDPVPAEHDKIVAACCVAYLPNRDEVTNLWFK 261

Query: 203 -QGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
              +A  +    +     +  +K     L+   K+ +  +
Sbjct: 262 GDAAASDSALYLNIVNNSVRASKIANRVLVDSLKETLQQQ 301


>gi|58381777|ref|XP_311461.2| AGAP010483-PA [Anopheles gambiae str. PEST]
 gi|55242661|gb|EAA07136.2| AGAP010483-PA [Anopheles gambiae str. PEST]
          Length = 303

 Score = 71.7 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 74/267 (27%), Gaps = 35/267 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR     R +     +  +A GS  ++  +T +L     E   P   R    G + 
Sbjct: 22  MRNDGRTNRDYRPMEFESEIVVHAAGSARLRLANTDILVGVKAEIDTPNPDR-PNEGKVD 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSR------QI 112
                   +T     R          + EI   + +A  S    DL+ L         ++
Sbjct: 81  FFIDCSANATPEFEGRGGEQ-----LATEISNTLSKAYESQKGFDLAGLCIMAGHQCWKL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS--NKFQLSQVLKGHVAAI------ 164
            +D  +++  G    A       AL +        +  +   +  +L             
Sbjct: 136 YVDVLILECGGNLFDAVSLAVKGALFNTRIPRVSTAMHDGGSMDLILTDDPYDCERLDVT 195

Query: 165 ------SCGMLCGYPIVDLDYGEDST--IDVDANFVMTDSGHIVEVQG-----SAERATF 211
                 +   +    +VD    E+      V         G+    Q      ++   + 
Sbjct: 196 TAPILVTVCKIGDQCVVDPSAEEEECSVASVAVGVSCRPDGNTTTKQSITTVRTSGEGSI 255

Query: 212 SQDHFFAMLNLAKDRIADLIKLQKDVI 238
             +      + A    A L K     +
Sbjct: 256 RLETLKKCFDTATTVGASLNKALMKAL 282


>gi|195583790|ref|XP_002081699.1| GD11151 [Drosophila simulans]
 gi|194193708|gb|EDX07284.1| GD11151 [Drosophila simulans]
          Length = 281

 Score = 71.7 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 79/263 (30%), Gaps = 30/263 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R  GR     R + L   +   A GS  ++  +T +L     E  VP  +   + G + 
Sbjct: 7   FRCDGRSRRDYRPMDLETGLVSNASGSARLRLANTDILVGVKTEIDVPNPL-TPEFGKLE 65

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL-----GSRQ---I 112
                   +T     R          +QE+   +  A  S +  +         +Q   +
Sbjct: 66  FFVDCSANATPEFEGRGG-----SDLAQELILSLKNAYESPLAFNYRTLCLIPGQQCWKL 120

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH-----MEDCS--NKFQLSQV-------LK 158
            ID  +++  G    A    A  AL +         M D    +              ++
Sbjct: 121 YIDILILECGGNLHDAVSLAAKAALFNTKLPRVTATMLDAGITDLIISDNPYDCTRIGIE 180

Query: 159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS--AERATFSQDHF 216
                ++   +  Y +VD    E+    V     ++       + G+         +D  
Sbjct: 181 TVPLLVTVCKIGDYVLVDPSAEEEVCSTVSMVVSVSMRNGQAFLSGTHLTGGGAMHRDTM 240

Query: 217 FAMLNLAKDRIADLIKLQKDVIS 239
              L L       L +L   +++
Sbjct: 241 RNCLELGLAIGEQLDRLLTKMLN 263


>gi|116207378|ref|XP_001229498.1| hypothetical protein CHGG_02982 [Chaetomium globosum CBS 148.51]
 gi|88183579|gb|EAQ91047.1| hypothetical protein CHGG_02982 [Chaetomium globosum CBS 148.51]
          Length = 268

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 74/225 (32%), Gaps = 34/225 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           +RL GRQ +Q R + LT       +  G   V  G T +L  AT E  VP ++     G 
Sbjct: 23  LRLDGRQLDQYRPLELTFG-----DQYGVADVTLGKTRVLAKATAEVTVP-YVDRPLDGI 76

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSR------ 110
            T    + P ++           R       + R++ + +R    +D  +L         
Sbjct: 77  FTIATELSPMTSPA-----FEVNRPTETEVLLSRLLEKTVRRSGALDTESLCLVAGQKCW 131

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQH--MEDCSNKFQLSQVLKGHV------- 161
            + +D  V+  DGG   AA      AL    +     +       +   +  V       
Sbjct: 132 SVRVDVHVVSHDGGLTDAACVAVVAALRHFRKPDTSMEAGRLTVYTPAEREPVPLSWLHS 191

Query: 162 ---AAISCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEV 202
                 S     G   ++D  + E+          +   G I ++
Sbjct: 192 PLCVTWSFFGDDGETAVLDATWLEEQVRVASCTVSLNKHGEICQI 236


>gi|196007348|ref|XP_002113540.1| hypothetical protein TRIADDRAFT_57060 [Trichoplax adhaerens]
 gi|190583944|gb|EDV24014.1| hypothetical protein TRIADDRAFT_57060 [Trichoplax adhaerens]
          Length = 741

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 67/221 (30%), Gaps = 38/221 (17%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  N +R I     +     GS L K G          E + P +  N     + 
Sbjct: 338 IRCDGRGLNDLRPIDAEINIFPALHGSSLFKRG----------ESQFPPYANNEIGRVM- 386

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
                         +RE   G           +   ALRSVV         + +   V+ 
Sbjct: 387 -----------ENSRREIGHGT----------LAKNALRSVVSDDF--PFTVRLTGQVLM 423

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ++G T  A+  G  +AL D    +        +  V      +          + D+   
Sbjct: 424 SNGSTSMASACGGSLALMDAGVPISRHIAGVAMGLVANP---SDDGSKFNYKILTDIAGI 480

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           ED   ++D     +  G I  +Q   +    S +     + 
Sbjct: 481 EDYFGEMDFKIAGSREG-ITSLQADFKVTGVSMELIEEAIK 520



 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 64/203 (31%), Gaps = 41/203 (20%)

Query: 13  EISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           EI  +       A+GS LV+ G T +L TA +      +        +  +Y     +TG
Sbjct: 53  EIKFSCGKLATIADGSVLVETGSTAVLVTAVMSRATTSY---AGFAPLRVDYREKASATG 109

Query: 72  N----RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
                  KRE        R     R I R++RS          QI+       A+  T  
Sbjct: 110 KIPVNFFKRELG---PSEREILASRSIDRSIRSSFQRGMPQEVQIVCSLMSADAERDTIV 166

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
            AI G                              A+  G +    I++    E     +
Sbjct: 167 PAINGG-----------------------------AVRVGYINDEVIINPTRVELYQSKL 197

Query: 188 DANFVMTDSGHIVEVQGSAERAT 210
           D   V +  G +V ++G+A    
Sbjct: 198 DLVIVASAKG-LVMLEGTASELP 219


>gi|71901440|ref|ZP_00683530.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
           Ann-1]
 gi|71728811|gb|EAO30952.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
           Ann-1]
          Length = 173

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 62/175 (35%), Gaps = 28/175 (16%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTA----TLEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A G+ +VK  DT LL T     T  E    +     +       G +P 
Sbjct: 15  VTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDYQEKFYAGGRIP- 73

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA--DGGTR 126
             G+  KRE   GR   +   I R+I R +R +         QII     +    DG   
Sbjct: 74  --GSFFKRE---GRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPEIDGDI- 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
             A+ GA  AL                    KG + A   G   G  I++    E
Sbjct: 128 -PAMIGASAALSLAGI-------------PFKGPIGAAKVGYNDGQYILNPTVSE 168


>gi|224001130|ref|XP_002290237.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973659|gb|EED91989.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 145

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 46/144 (31%), Gaps = 3/144 (2%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R S R+   +R +S        A+GS  +K G+TH++         P      K+     
Sbjct: 5   RPSQRKPTTLRPLSAELSPLHRADGSASLKCGNTHIMVAIHGPI-APRISHREKYDRAVV 63

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
                                      +     G AL S + L       I +   ++QA
Sbjct: 64  NVAFSKGLMMMAGSAAGGGSSGDVVEHDTAD--GDALSSCIMLEKYPRCVIQVVIQIVQA 121

Query: 122 DGGTRTAAITGAWVALHDCLQHME 145
           DG    +A   A +AL D    M 
Sbjct: 122 DGSVLGSATNCAVMALMDAGVAMR 145


>gi|16183595|gb|AAL13710.1| GM01970p [Drosophila melanogaster]
          Length = 233

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 77/237 (32%), Gaps = 37/237 (15%)

Query: 9   NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM--- 65
           +++R++          +GS +   G T L+       +V     +    ++   Y     
Sbjct: 12  DKLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAG 71

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP+ T     REA               I   L   +   A    ++ +    ++  G  
Sbjct: 72  LPQVTD--RIREAA--------------IRDVLELALLSEAHPRSKMSVQIQELEDRGSI 115

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDST 184
              A+  A +A+                   LK   AA+   +   G  ++D D  E   
Sbjct: 116 DACAVNCACLAM-------------LIGGLPLKYSFAAVHAIINEQGEYVLDPDQSETLH 162

Query: 185 IDVDANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 F      G+++ +Q    + +F    F  +  L +   A++ +  ++ ++ 
Sbjct: 163 QRASFTFAFDSVEGNLLLIQ---TKGSFKIAQFNDIECLCRAASAEIFQFYRNQVAK 216


>gi|213688370|ref|NP_001094195.1| exosome component 7 [Rattus norvegicus]
 gi|149018124|gb|EDL76765.1| exosome component 7 [Rattus norvegicus]
          Length = 291

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 72/243 (29%), Gaps = 29/243 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R + +   V     GS  VK G T +L     E   P  +     G++ 
Sbjct: 22  LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LERPSEGYLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QI 112
                   +T     R            EI   + R    +S VDL +L          +
Sbjct: 81  FFVDCSANATPEFEGRGG-----DDLGTEIANTLYRIFNNKSSVDLRSLCISPREHCWVL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ--VLKGHVAAISCGMLC 170
            +D  +++  G    A       AL +            + S+   L           + 
Sbjct: 136 YVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVE 195

Query: 171 GYP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
             P            +VD    E++         +T  G +  ++    + +   +  F 
Sbjct: 196 NVPCIVTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVG-KGSLDPESIFE 254

Query: 219 MLN 221
           M+ 
Sbjct: 255 MME 257


>gi|195121612|ref|XP_002005314.1| GI19145 [Drosophila mojavensis]
 gi|193910382|gb|EDW09249.1| GI19145 [Drosophila mojavensis]
          Length = 296

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 74/248 (29%), Gaps = 32/248 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R  GR     R + L   +   A GS  ++  +T +L     E  VP  +   + G + 
Sbjct: 22  FRCDGRSRRDYRPMELETGLVSNASGSARLRLANTDILVGVKTEIDVPNPL-TPEFGKLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVD---LSALGSRQ---I 112
                   +T     R          +QE+   +  A  S    D   L  +  +Q   +
Sbjct: 81  FFVDCSANATPEFEGRGG-----SDLAQELILSLQNAYESPYAFDYRTLCLIPGQQCWKL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHME-------DCSNKFQLSQV-------LK 158
            ID  +++  G    A    A  AL++               ++              + 
Sbjct: 136 YIDILILECGGNLHDAVSLAAKAALYNTKLPRVTATLLDAGVTDLIISDNPYDCTRIGID 195

Query: 159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM---TDSGHIVEVQGSAERATFSQDH 215
                ++   +  Y +VD    E+    V     +    +  ++     +    +  +D 
Sbjct: 196 AVPLLVTVCKIGDYCLVDPTAEEEVCSTVSMVVSVSMRNNEAYLSGTHMTG-GGSMHRDT 254

Query: 216 FFAMLNLA 223
               + L 
Sbjct: 255 MLNSIQLG 262


>gi|221221406|gb|ACM09364.1| Exosome complex exonuclease RRP45 [Salmo salar]
          Length = 231

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 72/218 (33%), Gaps = 39/218 (17%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C V  G T ++   + E   P   R    G +  
Sbjct: 23  RLDGRQTYDYRSIKISFG-TDY--GCCFVDLGKTRIMAQVSCELITPKENR-PNEGIMFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QII 113
              + P ++          GRQ     ++ R + R LR    +D  +L    G +  QI 
Sbjct: 79  NIELSPMASPA-----FEMGRQSELLVKLNRQLERCLRNSKCIDTESLCVVSGEKVWQIR 133

Query: 114 IDCDVIQADGGTR-----------------TAAITGAWVALHDCLQHMEDCSNKFQLSQV 156
           +D  ++  DG                       I G  V ++       +  +   LS  
Sbjct: 134 VDVRLLNHDGNLMDAASIAAIAALCHFRRPDVGIQGEEVTVYST-----EERDPIPLSIY 188

Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT 194
                 + S      Y +VD    E+  +D      M 
Sbjct: 189 HMPICVSFSFFQQGTYLLVDPCEREERVMDGLLMIAMN 226


>gi|195488381|ref|XP_002092290.1| GE11745 [Drosophila yakuba]
 gi|194178391|gb|EDW92002.1| GE11745 [Drosophila yakuba]
          Length = 296

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 73/247 (29%), Gaps = 30/247 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R  GR     R + L   +   A GS  ++  +T +L     E  VP  +     G + 
Sbjct: 22  FRCDGRSRRDYRPMDLETGLVSNASGSARLRLANTDILVGVKTEIDVPNPL-TPDFGKLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVD---LSALGSRQ---I 112
                   +T     R          +QE+   +  A  S    D   L  +  +Q   +
Sbjct: 81  FFVDCSANATPEFEGRGG-----SDLAQELILSLQNAYESPLAFDYRTLCLIPGQQCWKL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHME-------DCSNKFQLSQV-------LK 158
            ID  +++  G    A    A  AL +               ++              ++
Sbjct: 136 YIDILILECGGNLHDAVSLAAKAALFNTKLPRVTATLLDAGITDLIISDNPYDCTRIGIE 195

Query: 159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS--AERATFSQDHF 216
                ++   +  Y +VD    E+    V     ++       + G+         +D  
Sbjct: 196 TVPLLVTVCKIGDYCLVDPSAEEEVCSTVSVVVSVSMRNGKAFLSGTHLTGGGAMHRDTM 255

Query: 217 FAMLNLA 223
              L+L 
Sbjct: 256 RNCLDLG 262


>gi|219124479|ref|XP_002182530.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405876|gb|EEC45817.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 764

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 55/147 (37%), Gaps = 14/147 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR  +Q R+ ++ R +   A GS L+K G T +L   T +   P+   ++      +
Sbjct: 49  RPDGRLFHQTRQTNIQRGILNNACGSSLIKLGTTQVLAAVTYQVGQPIVSGSSGGSGDDS 108

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR-----QIIIDC 116
                   T   +   A +G        +Q  + R L+  +DL  L        ++I+  
Sbjct: 109 N------KTKGDIVIAADNGSVDAV---LQSWLQRLLQDTIDLEQLSIVPQAAFRLIVTV 159

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQH 143
            V+   G  R A       AL D    
Sbjct: 160 QVLNVAGNLRDACWLACVAALLDTKLP 186


>gi|195499795|ref|XP_002097098.1| GE26036 [Drosophila yakuba]
 gi|194183199|gb|EDW96810.1| GE26036 [Drosophila yakuba]
          Length = 227

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 73/226 (32%), Gaps = 31/226 (13%)

Query: 9   NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
           +++R++          +GS +   G T L+       +V     +    ++   Y     
Sbjct: 6   DKLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNY----- 60

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 + +A   +   R +E    I   L   +   A    ++ +    ++  G     
Sbjct: 61  ------RPKAGLPQVKERIREAA--IRDVLELALLSEAHPRSKMSVQIQELEDRGSIDAC 112

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDSTIDV 187
           A+  A +A+                   LK   AA+ C +   G  ++D D  E      
Sbjct: 113 AVNCACLAM-------------LIGGLPLKCSFAAVHCIINEQGEYVLDPDQSETLHQRA 159

Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
              F      G+++ VQ    +  F    F  +  L +   A++ +
Sbjct: 160 SFTFAFDSVEGNLLLVQ---TKGAFKIAQFNDIECLCRSASAEIFQ 202


>gi|19075183|ref|NP_587683.1| exosome subunit Rrp45 (predicted) [Schizosaccharomyces pombe 972h-]
 gi|21759396|sp|O74918|RRP45_SCHPO RecName: Full=Exosome complex component rrp45; AltName:
           Full=Ribosomal RNA-processing protein 45
 gi|3702641|emb|CAA21233.1| exosome subunit Rrp45 (predicted) [Schizosaccharomyces pombe]
          Length = 291

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 69/222 (31%), Gaps = 29/222 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GRQ +  R + +         G   V FG T ++   T E   P +      G  +
Sbjct: 23  LRLDGRQLSDFRSLEIQFG---KEYGQVDVSFGHTRVMARITTEITKP-YTDRPFDGIFS 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------I 112
               + P +          +GR   +   I R+I +A+R  + +D  +L          +
Sbjct: 79  ITTELTPLAYSA-----FEAGRVSDQEIVISRLIEKAVRRSNALDTESLCIISGQKCWHV 133

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVA 162
                 I  DG    AA      AL    +           +     +  +   +     
Sbjct: 134 RASVHFINHDGNLVDAACIAVIAALCHFRRPELTVVGEEVTVHPVEERVPVPLSILHMPI 193

Query: 163 AISCGMLCGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVEV 202
            ++          IVD    E+   +      +  +  + ++
Sbjct: 194 CVTFSFFNNGELAIVDATLEEEDLCNGSMTITLNKNREVCQI 235


>gi|323509319|dbj|BAJ77552.1| cgd7_2380 [Cryptosporidium parvum]
          Length = 408

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 90/277 (32%), Gaps = 43/277 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR  N+ R + +    +    G   V  G TH+L+    E   P   R+++ G+I+
Sbjct: 13  LRLDGRTMNEYRNVKINLNKNY---GEVEVNIGRTHVLSVVKSELVAPSQERSSE-GFIS 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQI 112
               + P S        A    +     EI   I R L+    +D   L          +
Sbjct: 69  FTVDIGPLSINPTS--HAFRHNRTTLGTEIANYIERILKETGAIDTEILCILSGVCVWSV 126

Query: 113 IIDCDVIQADGGTRTAAITGAWVAL---------HDCL--------------QHMEDCSN 149
             +  V+  DG    A +      L          D                Q +E+   
Sbjct: 127 KCEIHVLFDDGNLFDACLMATLSGLKHYRYNEIDVDSFLKKSKCEGFGERDYQRLENTIR 186

Query: 150 KFQLSQV-LKGHVAAISCGMLCGYP----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
           K ++    +     +IS G + G      IVD +  E+S  D   +  + D   +  +  
Sbjct: 187 KLEMIPFNVHHFPLSISIGYINGKEGLSYIVDPNSDEESISDTIIHISINDKQEVCGISK 246

Query: 205 SAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
               A  S +     + +A      L +  K     E
Sbjct: 247 FG-GAKLSLNQINFAIQIATIHSEKLHQEFKKAFDGE 282


>gi|66362890|ref|XP_628411.1| RRP45-like archaeo-eukaryotic exosomal rnase, PH domain
           [Cryptosporidium parvum Iowa II]
 gi|46229803|gb|EAK90621.1| RRP45-like archaeo-eukaryotic exosomal rnase, PH domain
           [Cryptosporidium parvum Iowa II]
          Length = 432

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 90/277 (32%), Gaps = 43/277 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR  N+ R + +    +    G   V  G TH+L+    E   P   R+++ G+I+
Sbjct: 37  LRLDGRTMNEYRNVKINLNKNY---GEVEVNIGRTHVLSVVKSELVAPSQERSSE-GFIS 92

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQI 112
               + P S        A    +     EI   I R L+    +D   L          +
Sbjct: 93  FTVDIGPLSINPTS--HAFRHNRTTLGTEIANYIERILKETGAIDTEILCILSGVCVWSV 150

Query: 113 IIDCDVIQADGGTRTAAITGAWVAL---------HDCL--------------QHMEDCSN 149
             +  V+  DG    A +      L          D                Q +E+   
Sbjct: 151 KCEIHVLFDDGNLFDACLMATLSGLKHYRYNEIDVDSFLKKSKCEGFGERDYQRLENTIR 210

Query: 150 KFQLSQV-LKGHVAAISCGMLCGYP----IVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
           K ++    +     +IS G + G      IVD +  E+S  D   +  + D   +  +  
Sbjct: 211 KLEMIPFNVHHFPLSISIGYINGKEGLSYIVDPNSDEESISDTIIHISINDKQEVCGISK 270

Query: 205 SAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
               A  S +     + +A      L +  K     E
Sbjct: 271 FG-GAKLSLNQINFAIQIATIHSEKLHQEFKKAFDGE 306


>gi|156083393|ref|XP_001609180.1| 3' exoribonuclease family, domain 1 containing protein [Babesia
           bovis T2Bo]
 gi|154796431|gb|EDO05612.1| 3' exoribonuclease family, domain 1 containing protein [Babesia
           bovis]
          Length = 196

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 17/145 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR   Q R+I + +       G+ +V  GDT +    +  E VP  + +   G +T 
Sbjct: 34  RLDGRTSIQPRKIHVEQ--LANP-GNVIVSLGDTIVFVAVS-SEIVPPNVEHPTEGIVTF 89

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------II 113
              + P  + N        G+     QEI   I +  +   ++D+ +L          + 
Sbjct: 90  SVELSPMCSLNY-----EPGKASDVEQEISYAIEKIYKDSGIIDVESLCIVSRKHVWCLR 144

Query: 114 IDCDVIQADGGTRTAAITGAWVALH 138
           ++  ++Q DG    A     + AL 
Sbjct: 145 VNIHILQNDGNLLDATNIAVFKALM 169


>gi|313217648|emb|CBY38696.1| unnamed protein product [Oikopleura dioica]
 gi|313233490|emb|CBY09662.1| unnamed protein product [Oikopleura dioica]
          Length = 224

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V K A GS  V++    ++      + +      +  G +  E      ++  R  R A 
Sbjct: 40  VIKNANGSSYVEYNGAKVMVACIGPKDLAKREDFSLSGLLKIELSYCAFAS--RASRRAP 97

Query: 80  SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ---ADGGTRTAAITGAWVA 136
           S +     +E  ++I  AL+SV+ L      QI +   VI    A+  T  A +T   +A
Sbjct: 98  S-KTTEEEKEQAQIIEEALKSVILLKRYPKSQIDMRVQVICEGLAETTTMAAIVTACGLA 156

Query: 137 LHDCLQHM 144
             D    M
Sbjct: 157 AADAGLDM 164


>gi|302654106|ref|XP_003018865.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
           putative [Trichophyton verrucosum HKI 0517]
 gi|291182546|gb|EFE38220.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
           putative [Trichophyton verrucosum HKI 0517]
          Length = 292

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 90/261 (34%), Gaps = 30/261 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ +Q+R + LT        G+  V+ G T +L   + E   P   R+   G  T
Sbjct: 23  VRLDGRRFDQLRPVELTFG---EEHGNVKVQLGKTAVLVRISAELTTPRPERDCD-GIFT 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------I 112
               +   +          +GR       + R + + +R  + +D  +L   +      +
Sbjct: 79  VVVELNDMALPGY-----ETGRPSELEVSLSRTLDKIVRRSNALDTESLCIAKGRICWNV 133

Query: 113 IIDCDVIQADGGTRTAAITGAWVAL----------HDCLQHMEDCSNKFQLSQVLKGHVA 162
             D  ++  DGG   A+       L           D    +     K  +   L     
Sbjct: 134 RADIHILDCDGGLIDASCLAIMAGLLHFRLPESTVRDGEVTVFTTEEKVPVQLNLTKIPL 193

Query: 163 AISCGMLCGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +++  +       ++D    E++  +      +  +G I  +    + A     +     
Sbjct: 194 SVTFNLYDEGKIMLLDATTSEEAVSEGSLVVALDKTGEI-ALYSKPDGAPADPVNMVNCS 252

Query: 221 NLAKDRIADLIKLQKDVISNE 241
            LA +++ +L KL    +  +
Sbjct: 253 TLALEKVRELNKLLAARLEED 273


>gi|225441838|ref|XP_002284088.1| PREDICTED: similar to 3-5-exoribonuclease/RNA binding protein-like
           protein [Vitis vinifera]
          Length = 303

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 94/269 (34%), Gaps = 34/269 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   + R+ SL       A+GS L K G T +L    +E   P    +   G I 
Sbjct: 36  IRPDARPLGRARDTSLALGAVASADGSALAKIGCTTMLAAVKMEVMTPP-KESPDEGSIA 94

Query: 61  AEYGMLPRSTG-NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL------GSRQII 113
            E+ M P  +   R  R A        S+++   I  +   +++L  L       +    
Sbjct: 95  IEFYMPPICSPLVRPGRPAEEAPVV--SKQLSDTILSS--GMINLKELSLVSGKAAWMAY 150

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHM----------------------EDCSNKF 151
           +D   + ADG    AA+  A  A       +                      ++  NK 
Sbjct: 151 LDIYCLDADGSLFDAALLAAVAAFSHLRIPVVSLNEEGRVVVVSEENEEGKSEKEPVNKG 210

Query: 152 QLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
           +    L     +++C +   Y + D    E+S ++     V+  SG +V +         
Sbjct: 211 KRKLTLSSLPFSLTCILHKNYILADPTAEEESIMETLVTVVLDSSGQLVSLYKPGGPVLA 270

Query: 212 SQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                   + L + R+ +L  +  + IS+
Sbjct: 271 YASAVQDCIALTRQRVKELKSILNEAISD 299


>gi|326469540|gb|EGD93549.1| 3' exoribonuclease [Trichophyton tonsurans CBS 112818]
 gi|326478933|gb|EGE02943.1| exosome complex exonuclease RRP45 [Trichophyton equinum CBS 127.97]
          Length = 292

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 90/261 (34%), Gaps = 30/261 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ +Q+R + LT        G+  V+ G T +L   + E   P   R+   G  T
Sbjct: 23  VRLDGRRFDQLRPVELTFG---EEHGNVKVQLGKTAVLVRISAELTTPRPERDCD-GIFT 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------I 112
               +   +          +GR       + R + + +R  + +D  +L   +      +
Sbjct: 79  VVVELNDMALPGY-----ETGRPSELEVSLSRTLDKIVRRSNALDTESLCIAKGRICWNV 133

Query: 113 IIDCDVIQADGGTRTAAITGAWVAL----------HDCLQHMEDCSNKFQLSQVLKGHVA 162
             D  ++  DGG   A+       L           D    +     K  +   L     
Sbjct: 134 RADIHILDCDGGLIDASCLAIMAGLLHFRLPESTVRDGEVTVFTTEEKVPVQLNLTKIPL 193

Query: 163 AISCGMLCGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +++  +       ++D    E++  +      +  +G I  +    + A     +     
Sbjct: 194 SVTFNLYDEGKIMLLDATTSEEAVSEGSLVVALDKTGEI-ALYSKPDGAPADPVNMVNCS 252

Query: 221 NLAKDRIADLIKLQKDVISNE 241
            LA +++ +L KL    +  +
Sbjct: 253 TLALEKVRELNKLLAARLEED 273


>gi|167537668|ref|XP_001750502.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771042|gb|EDQ84716.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1499

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 72/223 (32%), Gaps = 33/223 (14%)

Query: 1    MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            +R  GR+  + R   ++  V + A GS +V  G T ++ +   E   P    N   GW+ 
Sbjct: 1227 VRPDGRELAEPRVTRVSVNVVQSANGSSMVVMGKTSVMASLKAEFANPPLNPNAASGWLV 1286

Query: 61   AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL------RS---VVDLSALGSRQ 111
            A   M P  +          G    +++ +   +   L      R    V+  + L    
Sbjct: 1287 ANVTMPPMCSST-----ITPGPPSTQARALSTFLSDILLRHNVVRPEQLVIKANKL-VWC 1340

Query: 112  IIIDCDVIQADGGTRTAAITGAWVALHDCLQH-------MEDCSNKFQLSQVLKGHVA-- 162
            + +D  V+  DG    A +  A  AL              ED       +      VA  
Sbjct: 1341 LFLDVVVLNDDGNLPDAILLAAAAALQTATLPTVESADENEDAGEDTIPTVDPSQRVALS 1400

Query: 163  ------AISCGML---CGYPIVDLDYGEDSTIDVDANFVMTDS 196
                  A +   L       +VD  + E++        VM   
Sbjct: 1401 LGQLPLAATMAWLHQDAEEILVDPTHEEENMATACMTVVMQGD 1443


>gi|67473385|ref|XP_652459.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
 gi|67478768|ref|XP_654766.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
 gi|56469313|gb|EAL47073.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
 gi|56471839|gb|EAL49380.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
          Length = 227

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 34/235 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---W 58
           R  GR+ N++R  ++   V   A+GSCL++  ++ ++++          I+         
Sbjct: 7   RGDGREANEIRATTIKIGVISGAKGSCLIQKENSKVISSV--------QIKTQDESIDFE 58

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
            T +         + + +         +  E+Q ++ ++L S ++  +   + I +   V
Sbjct: 59  FTVKVTFAQFGNNDLLNK--------RKEVELQEILTQSLVSRINQESNKGKIICLQVFV 110

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ++ DG    + I  + +AL D    M+   +    + V+K  +            IVD  
Sbjct: 111 MEQDGSVEDSIINSSSLALFDSEIQMD---SIIIATTVVKLPIY--------NQVIVDPT 159

Query: 179 YGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
             E+   +       +  +  I ++  S            + L++A D    L K
Sbjct: 160 ALEEEKKEGSVLIACIPSNSSITQIYMSG---VLDPQDISSCLSIALDSCWKLNK 211


>gi|24645688|ref|NP_650001.2| Rrp46 [Drosophila melanogaster]
 gi|23170911|gb|AAF54530.3| Rrp46 [Drosophila melanogaster]
 gi|212287964|gb|ACJ23457.1| FI06805p [Drosophila melanogaster]
          Length = 233

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 76/237 (32%), Gaps = 37/237 (15%)

Query: 9   NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM--- 65
           +++R++          +GS +   G T L+       +V     +    ++   Y     
Sbjct: 12  DKLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAG 71

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           LP+ T     REA               I   L   +   A    ++ +    ++  G  
Sbjct: 72  LPQVTD--RIREAA--------------IRDVLELALLSEAHPRSKMSVQIQELEDRGSI 115

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDST 184
              A+  A +A+                   LK   AA+   +   G  ++D D  E   
Sbjct: 116 DACAVNCACLAM-------------LIGGLPLKYSFAAVHAIINEQGEYVLDPDQSETLH 162

Query: 185 IDVDANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                 F      G+++ +Q    + +F    F  +  L     A++ +  ++ ++ 
Sbjct: 163 QRASFTFAFDSVEGNLLLIQ---TKGSFKIAQFNDIECLCLAASAEIFQFYRNQVAK 216


>gi|316975514|gb|EFV58947.1| exosome complex exonuclease RRP45 [Trichinella spiralis]
          Length = 448

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 71/225 (31%), Gaps = 38/225 (16%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL----TTATLEEKVPMWIRNTKHG 57
           R   R+  + R + L       A GSC+ +FG+T +      +      V   +     G
Sbjct: 39  REDLRENEEFRPVRLCFG---RAFGSCVAEFGNTKVFVKTSCSV-----VTPSLTRPSSG 90

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSAL----GSR- 110
            +       P++           GR   +  E QR++ R ++    V L  L    G + 
Sbjct: 91  ILKINLEFGPQAVA-----HYEVGRL-EKCIEYQRLLERNIKDARCVCLDTLCIISGEKV 144

Query: 111 -QIIIDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKG 159
            QI  D  V+  DG     A      AL                +    +K  L   +  
Sbjct: 145 WQIRCDVYVLNNDGSLVDCACVAILSALRHFRIPSVTRHGTDYTIHSFDDKEPLRLDIFH 204

Query: 160 HVAAISCGMLCGYP--IVDLDYGEDSTIDVDANFVMTDSGHIVEV 202
           +   I+ G   G    I +    E++ +D      M        +
Sbjct: 205 YPCMITLGYYSGKEIFICEPSLLEETVLDQCFILAMNAHFEFTLI 249


>gi|240849627|ref|NP_001155833.1| 3 exoribonuclease-like [Acyrthosiphon pisum]
 gi|239791374|dbj|BAH72161.1| ACYPI010191 [Acyrthosiphon pisum]
          Length = 400

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 86/257 (33%), Gaps = 36/257 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           +RL GR++++ R + +   +    + G+CLV  G T +    + E   P   R    G +
Sbjct: 22  IRLDGRKKDEYRPLKIAYGL----DWGNCLVTLGCTRVFAQVSCEIYQPNNSR-PNEGVL 76

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS------RQII 113
                +     G+    +     Q      ++R    +    +DL AL         +I 
Sbjct: 77  QISAELA----GDNKINDLTKINQV-----LERFYKDS--KCIDLEALCIIAEEKVWKIK 125

Query: 114 IDCDVIQADGGTRTAAITGAWVALHD--------CLQHMEDCSNKFQLSQVLKGH----V 161
           +D  V+  DG T          AL            + +   S+  +    L  H    +
Sbjct: 126 VDLSVLNMDGNTLGCCSIATLAALMHFRYPDVVSTGEKVVVYSSSERDPIPLSLHHHPVI 185

Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           A+ +      + I+D    ED   D   +    +   +  V      A+ SQ+      N
Sbjct: 186 ASFAIFEKYDFIILDPSLLEDKVCDNKLSICFNNHSEMCGVDIEG-CASLSQNLLMNCSN 244

Query: 222 LAKDRIADLIKLQKDVI 238
            A      L+   K  I
Sbjct: 245 QAASVAIKLVDKIKSAI 261


>gi|330935982|ref|XP_003305202.1| hypothetical protein PTT_17982 [Pyrenophora teres f. teres 0-1]
 gi|311317878|gb|EFQ86700.1| hypothetical protein PTT_17982 [Pyrenophora teres f. teres 0-1]
          Length = 291

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 86/258 (33%), Gaps = 34/258 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           +R+  R  +  R + LT       +  G   V+ G T ++   +++   P+  R    G 
Sbjct: 23  IRIDRRAFDAFRPLELTFG-----DEYGVADVQLGKTRVIARISVDVTTPLPERKFD-GI 76

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------R 110
                   P ++          GR       + R++ +A+R    +D  +L         
Sbjct: 77  FQIVTEFSPMASPA-----FEVGRPTDSEVILSRILEKAIRRSNALDTESLCIIAGSKCF 131

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGH 160
            +  D  +I  DGG   A+      AL    +           +    ++  +   +   
Sbjct: 132 ALRADVHIIDHDGGLIDASCIAVMAALQHFRRPDVVVEGEKATILSVRDREPIPLSILHQ 191

Query: 161 VAAISCGMLCGYP-IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
              ++         ++D +  E+     +    M   G + ++      AT +       
Sbjct: 192 PLCVTFSYFEDEIFLIDANLAEEQVRQGEIILTMNKHGELCQMAKYG-GATINPLALLNC 250

Query: 220 LNLAKDRIADLIK-LQKD 236
            N+A +++ ++   +QK 
Sbjct: 251 TNVALEKVKEMSAFIQKR 268


>gi|119625654|gb|EAX05249.1| exosome component 9, isoform CRA_c [Homo sapiens]
          Length = 377

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 74/243 (30%), Gaps = 42/243 (17%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 7   RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 62

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQIIIDCDVI 119
              +   +           GRQ     ++ R++ R LR    +D  +L            
Sbjct: 63  NLELSQMAAPA-----FEPGRQSDLLVKLNRLMERCLRNSKCIDTESLC----------- 106

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLD 178
                                 +             +    +         G   +VD +
Sbjct: 107 ------------------VVAGEKYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPN 148

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             E+  +D      M     I  +Q S       +D       +A  ++A++ +L    +
Sbjct: 149 EREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSKIAGVKVAEITELILKAL 207

Query: 239 SNE 241
            N+
Sbjct: 208 END 210


>gi|28573444|ref|NP_725517.2| Rrp42 [Drosophila melanogaster]
 gi|28380797|gb|AAF58076.3| Rrp42 [Drosophila melanogaster]
 gi|85857716|gb|ABC86393.1| IP10364p [Drosophila melanogaster]
          Length = 296

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 73/247 (29%), Gaps = 30/247 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R  GR     R + L   +   A GS  ++  +T +L     E  VP  +   + G + 
Sbjct: 22  FRCDGRSRRDYRPMDLETGLVSNASGSARLRLANTDILVGVKTEIDVPNPL-TPEFGKLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL-----GSRQ---I 112
                   +T     R          +QE+   +  A  S +  +         +Q   +
Sbjct: 81  FFVDCSANATPEFEGRGG-----SDLAQELILSLQNAYESPLAFNYRTLCLIPGQQCWKL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH-----MEDCS--NKFQLSQV-------LK 158
            ID  +++  G    A    A  AL +         M D    +              ++
Sbjct: 136 YIDILILECGGNLHDAVSLAAKAALFNTKLPRVTATMLDAGITDLIISDNPYDCTRIGIE 195

Query: 159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS--AERATFSQDHF 216
                ++   +  Y +VD    E+    V     ++       + G+         +D  
Sbjct: 196 TVPLLVTVCKIGDYVLVDPSAEEEVCSTVSMVVSVSMRNGQAFLSGTHLTGGGAMHRDTM 255

Query: 217 FAMLNLA 223
              L L 
Sbjct: 256 RNCLELG 262


>gi|320033639|gb|EFW15586.1| exosome complex endonuclease 2/ribosomal RNA processing protein
           [Coccidioides posadasii str. Silveira]
          Length = 265

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 81/229 (35%), Gaps = 26/229 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           +RL GR  +Q R ++LT       +  G   V+ G T ++   + E   P   R++  G 
Sbjct: 23  VRLDGRALDQFRPLNLTFG-----DEYGHVKVQLGRTSVIVRISAEVTAPRPERDSD-GI 76

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ----- 111
            T    +   +          +GRQ     ++ R + + +R    +D  +L   +     
Sbjct: 77  FTVSIELNDMALPG-----FETGRQSDLETQLSRTLDKIVRRSNALDTESLCIAKGLSCW 131

Query: 112 -IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS-NKFQLSQVLKGHVAAISCGML 169
            +  D  ++ ADGG            L          S  K  +    +     ++   +
Sbjct: 132 NVRADVHIVDADGGLVDICCLAIMAGLLHFRIPESTVSDGKVTVYSPEEKVPVPLNLTKV 191

Query: 170 CGYPIVDLDYGEDSTIDVDANF---VMTDSGHIVEVQGSAERATFSQDH 215
                 +L Y E     +DA      +++   I+ +  + E A +++  
Sbjct: 192 PLSITFNL-YDEGKITLMDATSSEEAVSEGAVIIALDKTGEIALYTKAE 239


>gi|298711453|emb|CBJ32592.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 239

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 67/193 (34%), Gaps = 28/193 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGS--CLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           MR  GR     R +S+   V   + GS    +    T +L    +E   P  +     G 
Sbjct: 27  MRGDGRGRLDYRSLSVQAGVLAQSNGSARVTIAHNGTDVLAAVKVEVGEPG-LEAPGAGR 85

Query: 59  I----TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSALGSR-- 110
           +    +    + P         E  SG        +   + R+++ V  +DL ALG    
Sbjct: 86  VEVCVSCSNSLFP------KFDERSSGDVNAV---LSGALERSMQGVGGLDLDALGIVDG 136

Query: 111 ----QIIIDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQLSQVLKGHVA 162
                + +D  V+QADG    A+   A+ AL+      +  +      +   ++      
Sbjct: 137 KFCWVVFVDILVLQADGNLLDASSFAAYTALNTARIPKVTPLVGEGGIYDDFEISSEIDD 196

Query: 163 AISCGMLCGYPIV 175
           A++       P+ 
Sbjct: 197 AVAIKGATNVPVC 209


>gi|294654809|ref|XP_456890.2| DEHA2A12914p [Debaryomyces hansenii CBS767]
 gi|199429165|emb|CAG84867.2| DEHA2A12914p [Debaryomyces hansenii]
          Length = 302

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 80/250 (32%), Gaps = 42/250 (16%)

Query: 7   QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
           + +++R++ L   +   A GS  ++ GDT +  +       P+          + E   L
Sbjct: 54  RNDEVRKMFLKSGLVTNANGSAYLEVGDTIIEVSVFGPR--PIRGSFIDRASFSVECKFL 111

Query: 67  PRSTG----NRVKREA---VSGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCD 117
           P  T         +      +GR    + E  I   +  +L   + L       I I   
Sbjct: 112 PYVTQPNEITFNGKATNFNNNGRPSLTNIEQKISSYLETSLLPCILLEKYPKSTIDIFVS 171

Query: 118 VIQADGGTRTAA---------ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
           VI  +    + +         I  + +AL D    ++D     Q           ++   
Sbjct: 172 VISTNSNPNSNSSLLNLINWIINCSSLALVDSGIELKDIVTSGQ-----------VNLNQ 220

Query: 169 LCGYPIVDLDYG------EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
                 +D  Y       EDS  D   +F+   +  IV      ++   ++     +++ 
Sbjct: 221 KSNELTLDPIYPVDTIDKEDSI-DCLVSFMNLRNDEIVGFWVEGKQEELNETIVTQLID- 278

Query: 223 AKDRIADLIK 232
                 ++ K
Sbjct: 279 ---GCNEMSK 285


>gi|114595916|ref|XP_001153907.1| PREDICTED: similar to exosome component 9 isoform 2 [Pan
           troglodytes]
          Length = 341

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 74/243 (30%), Gaps = 42/243 (17%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQIIIDCDVI 119
              +   +           GRQ     ++ R++ R LR    +D  +L            
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLC----------- 122

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLD 178
                                 +             +    +         G   +VD +
Sbjct: 123 ------------------VVAGEKYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPN 164

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             E+  +D      M     I  +Q S       +D       +A  ++A++ +L    +
Sbjct: 165 EREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSKIAGVKVAEITELILKAL 223

Query: 239 SNE 241
            N+
Sbjct: 224 END 226


>gi|115735795|ref|XP_001191677.1| PREDICTED: similar to conserved hypothetical protein, partial
           [Strongylocentrotus purpuratus]
          Length = 84

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 16  LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           L       A+GSC ++  +T ++       +VP       +G +  E+     ++  R  
Sbjct: 1   LKAGAVSQAKGSCYMEMKNTKVICAVYGPREVPRRDGFVINGQLRCEFKFATFASEVRHG 60

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDL 104
                  +      +   + +AL   V L
Sbjct: 61  HLTSHTEKD-----LALQVQQALEPAVCL 84


>gi|312072883|ref|XP_003139269.1| hypothetical protein LOAG_03684 [Loa loa]
 gi|307765574|gb|EFO24808.1| hypothetical protein LOAG_03684 [Loa loa]
          Length = 224

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 73/235 (31%), Gaps = 33/235 (14%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R++         A+GSC ++ G T +         V    R ++   I   Y       
Sbjct: 16  LRDLKAQLSFLPRADGSCALEQGTTVIWCGINGPGNVSSSKRLSERLVIDILYKHA---- 71

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
                           S +I R++G AL+  VD        + +   ++Q  G       
Sbjct: 72  -----------HGLKNSVKINRLLGAALKHSVDHVHYPRVVLNVTLHLLQEGG------- 113

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
                           C     L  ++ G    I+     G  I+D    +  + D    
Sbjct: 114 ------CEAAAALNAACLAALDLGIIMNGMFCGITVATSQGNLILDPICPQCCSADAVYT 167

Query: 191 FVMTDSGHIVEVQGSA---ERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           F    SG   E   +       TF    F A   LAK   AD+    ++++  ++
Sbjct: 168 FAFYSSGK--ESTKTVACDTDGTFEYGTFEAARTLAKQASADIFLFYREILQRKL 220


>gi|119192860|ref|XP_001247036.1| hypothetical protein CIMG_00807 [Coccidioides immitis RS]
          Length = 292

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 82/229 (35%), Gaps = 26/229 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           +RL GR  +Q R ++LT       +  G   V+ G T ++   + E   P   R++  G 
Sbjct: 23  VRLDGRALDQFRPLNLTFG-----DEYGHVKVQLGRTTVIVRISAEVTAPRPERDSD-GI 76

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ----- 111
            T    +   +          +GRQ     ++ R + + +R  + +D  +L   +     
Sbjct: 77  FTVSIELNDMALPG-----FETGRQSDLETQLSRTLDKIVRRSNALDTESLCIAKGLSCW 131

Query: 112 -IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS-NKFQLSQVLKGHVAAISCGML 169
            +  D  ++ ADGG            L          S  K  +    +     ++   +
Sbjct: 132 NVRADVHIVDADGGLVDICCLAIMAGLLHFRIPESTVSDGKVTVYSPEEKVPVPLNLTKV 191

Query: 170 CGYPIVDLDYGEDSTIDVDANF---VMTDSGHIVEVQGSAERATFSQDH 215
                 +L Y E     +DA      +++   I+ +  + E A +++  
Sbjct: 192 PLSITFNL-YDEGKITLMDATSSEEAVSEGAVIIALDKTGEIALYTKAE 239


>gi|189206730|ref|XP_001939699.1| 3' exoribonuclease [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187975792|gb|EDU42418.1| 3' exoribonuclease [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 291

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 86/258 (33%), Gaps = 34/258 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           +R+  R  +  R + LT       +  G   V+ G T ++   +++   P+  R    G 
Sbjct: 23  IRIDRRAFDAFRPLELTFG-----DEYGVADVQLGKTRVIARISVDVTTPLPERKFD-GI 76

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------R 110
                   P ++          GR       + R++ +A+R    +D  +L         
Sbjct: 77  FQIVTEFSPMASPA-----FEVGRPTDAEVILSRILEKAIRRSNALDTESLCIIAGSKCF 131

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGH 160
            +  D  +I  DGG   A+      AL    +           +    ++  +   +   
Sbjct: 132 ALRADVHIIDHDGGLIDASCIAVMAALQHFRRPDVVVEGEKATILSVRDREPIPLSILHQ 191

Query: 161 VAAISCGMLCGYP-IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
              ++         ++D +  E+     +    M   G + ++      AT +       
Sbjct: 192 PLCVTFSYFEDEIFLIDANLAEEQVRQGEVILTMNKHGELCQIAKYG-GATINPLALLNC 250

Query: 220 LNLAKDRIADLIK-LQKD 236
            N+A +++ ++   +QK 
Sbjct: 251 TNVALEKVKEMSAFIQKR 268


>gi|58260288|ref|XP_567554.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134116266|ref|XP_773087.1| hypothetical protein CNBJ0820 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255708|gb|EAL18440.1| hypothetical protein CNBJ0820 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57229604|gb|AAW46037.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 268

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 71/240 (29%), Gaps = 31/240 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R + + R I L   +   A GS  ++ G   +  +             +  G +  
Sbjct: 34  RTD-RTDQESRPIFLKTGLISQAHGSGYIEAGGVKIACSVYGPRP--KPPPYSPQGTLNL 90

Query: 62  EYGMLPRSTGNRVK--REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
           E    P ++  R    R+                  + L   + L  L    I +   V+
Sbjct: 91  EVKFAPFASDPRRAPLRDTEPLPLSNLLT-------QLLLPTLHLHLLPKSSIDVYLLVL 143

Query: 120 QAD--GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           ++D      +A +T A  A+ D    M        ++ V                 ++D 
Sbjct: 144 ESDTLTNVLSAGLTVASAAVADAGIEMAGLGVGGVVASVGGDEKQGRR------RVVIDP 197

Query: 178 DYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              E+   DV      M   G +  +  + E             N+    I  +I+  K+
Sbjct: 198 SLEEEKESDVKVMVGTMPALGKVTNIWLTGE------AEVDDACNM----IEQVIEASKE 247


>gi|74025204|ref|XP_829168.1| exosome-associated protein 4 [Trypanosoma brucei TREU927]
 gi|70834554|gb|EAN80056.1| exosome-associated protein 4 [Trypanosoma brucei]
          Length = 227

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 85/243 (34%), Gaps = 26/243 (10%)

Query: 2   RLSGRQ-ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R  GR+  +++R   +   V   +  S  ++ G T ++      +++    R +  G + 
Sbjct: 3   RSHGRRSPDEVRYPHIVLNVLGQSYSSACIEVGSTRVVCAVHHPQQLIDEYRGS-RGRVA 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
                  R+     K E          +++   +   +   V L  +    + +  +++ 
Sbjct: 62  CTVRRSSRA----QKHELAFRADVTPEKDLALALEGVVEQAVVLEKIPQLLVEVAVEILA 117

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
            DGG   A  TG   AL      M D               A  +  +  G  + D    
Sbjct: 118 EDGGLWDAIATGVCAALASGGFEMYDT------------FSACGAALLPDGSIVTDPSAT 165

Query: 181 EDSTIDVDA-NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           E +T    A    M +SG++     +A+R +        ++  A          +K+VIS
Sbjct: 166 EWNTAKATAVTCAMLNSGNMCF---TAQRGSCEPTTALDLVMAALKGTL----ARKNVIS 218

Query: 240 NEV 242
           +++
Sbjct: 219 SQL 221


>gi|119625655|gb|EAX05250.1| exosome component 9, isoform CRA_d [Homo sapiens]
          Length = 393

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 74/243 (30%), Gaps = 42/243 (17%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GRQ    R I ++   + Y  G C+V+ G T +L   +  E V   +     G +  
Sbjct: 23  RLDGRQTYDYRNIRISFG-TDY--GCCIVELGKTRVLGQVS-CELVSPKLNRATEGILFF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQIIIDCDVI 119
              +   +           GRQ     ++ R++ R LR    +D  +L            
Sbjct: 79  NLELSQMAAPA-----FEPGRQSDLLVKLNRLMERCLRNSKCIDTESLC----------- 122

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLD 178
                                 +             +    +         G   +VD +
Sbjct: 123 ------------------VVAGEKYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPN 164

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             E+  +D      M     I  +Q S       +D       +A  ++A++ +L    +
Sbjct: 165 EREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSKIAGVKVAEITELILKAL 223

Query: 239 SNE 241
            N+
Sbjct: 224 END 226


>gi|194882669|ref|XP_001975433.1| GG20559 [Drosophila erecta]
 gi|190658620|gb|EDV55833.1| GG20559 [Drosophila erecta]
          Length = 296

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 74/247 (29%), Gaps = 30/247 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R  GR     R + L   +   A GS  ++  +T +L     E  VP  +   + G + 
Sbjct: 22  FRCDGRSRRDYRPMDLETGLVSNASGSARLRLANTDILVGVKTEIDVPNPL-TPEFGKLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVD---LSALGSRQ---I 112
                   +T     R          +QE+   +  A  S    D   L  +  +Q   +
Sbjct: 81  FFVDCSANATPEFEGRGG-----SDLAQELILSLQNAYESPLAFDYRTLCLIPGQQCWKL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH-----MEDCS--NKFQLSQV-------LK 158
            ID  +++  G    A    A  AL +         M D    +              ++
Sbjct: 136 YIDILILECGGNLHDAVSLAAKAALFNTKLPRVTATMLDAGITDLIISDNPYDCTRISIE 195

Query: 159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS--AERATFSQDHF 216
                ++   +  Y +VD    E+    V     ++       + G+         +D  
Sbjct: 196 TVPLLVTVCKVGDYCLVDPSAEEEVCSTVSVVVSVSMRDGQAFLSGTHLTGGGAMHRDTM 255

Query: 217 FAMLNLA 223
              L L 
Sbjct: 256 RNCLELG 262


>gi|37359778|dbj|BAC97867.1| mKIAA0116 protein [Mus musculus]
          Length = 286

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 69/243 (28%), Gaps = 29/243 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R + +   V     GS  VK G T  L     E   P  +     G++ 
Sbjct: 17  LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDFLVGVKAEMGTPK-LEKPNEGYLE 75

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QI 112
                   +T     R            EI   + R    +S VDL +L          +
Sbjct: 76  FFVDCSANATPEFEGRGG-----DDLGTEIANTLYRIFNNKSSVDLRSLCISPREHCWVL 130

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS--NKFQLSQVLKGHVAAISCGMLC 170
            +D  +++  G    A       AL +            +      L           + 
Sbjct: 131 YVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAKDIELSDDPYDCIRLSVE 190

Query: 171 GYP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
             P            +VD    E++         +T  G +  ++    + +   +  F 
Sbjct: 191 NVPCIVTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVG-KGSLDPESIFE 249

Query: 219 MLN 221
           M+ 
Sbjct: 250 MME 252


>gi|326430620|gb|EGD76190.1| hypothetical protein PTSG_00897 [Salpingoeca sp. ATCC 50818]
          Length = 304

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 82/265 (30%), Gaps = 45/265 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR     R + L       A GS  V+   T +L    +E   P   R  +     
Sbjct: 37  IRCDGRDLLDRRPLELETGNITNANGSSRVQLMGTDVLVGVKVEVATPTDDRPDE----- 91

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR----------SVVDLSA---L 107
              GML  S  +     A       R+      + R+L             +DL     L
Sbjct: 92  ---GMLEFSISSSSAN-ATVAALDART---ADKMTRSLEFLAEQLQKTSHALDLKKLCIL 144

Query: 108 GSRQII---IDCDVIQADGGTRTAAITGAW-VALHDCLQH---MEDCSNKFQLSQVLKGH 160
             + +    +D  V+Q+ GG     +  A   ALHD       +   SN   +   +  +
Sbjct: 145 PGKAVWCVRVDVLVLQSLGGNVVECVFLAIKAALHDTTIPNCTLIKDSNGEAVDFDISSN 204

Query: 161 VAAIS-------------CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAE 207
              +S              G++      D  + E+   D      ++ SG +   Q    
Sbjct: 205 AYDVSPIEGVAEFPVILCFGIIGARVFADPLFEEEECADAFVLVGVSASGAVCLTQQVCA 264

Query: 208 RATFSQDHFFAMLNLAKDRIADLIK 232
                       ++ A+  +  +++
Sbjct: 265 GRGVDPTTIIEAVDTARQAVKGVLE 289


>gi|58266526|ref|XP_570419.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134110532|ref|XP_776093.1| hypothetical protein CNBD1410 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258761|gb|EAL21446.1| hypothetical protein CNBD1410 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226652|gb|AAW43112.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 308

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 80/288 (27%), Gaps = 57/288 (19%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   Q+R + L+      A+GS    FG   +L + +   +V +            
Sbjct: 18  RPDGRTPAQLRPLHLSIGELDRADGSARFAFGSNAVLASCSGPIEVRLREELPDKATFEV 77

Query: 62  EYGMLP--RSTGNR---VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            +  L    +T +R      E +        +       R+L  +V  S + S   ++  
Sbjct: 78  NHRPLEGVGATPSRALVTTLETIFPPILSLEKH-----PRSLVQLVVQSLVPSTGRVVYG 132

Query: 117 DVIQADG-----GTRTA-------------------AITGAWVALHDCLQHMEDCSNKFQ 152
            V  A+G      T  A                   +    +                  
Sbjct: 133 SVFGAEGVGAEQNTWPATDKDDYAYIPESRKDAARISPAAGYTFTARAASINASTLALLS 192

Query: 153 LS--QVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF------------------V 192
                +L   VA        G  ++D +  E+        F                  V
Sbjct: 193 AGTISILALPVAVALVVTTKGRVMLDPEADEEKQAKARLGFGWAWGAVFGTANEENNMGV 252

Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNL---AKDRIADLIKLQKDV 237
              +    E+       +F++  +   L +   A   I + I++Q D 
Sbjct: 253 AGQNDGGAELVWIESEGSFTRQEWSEALQMSKTASKAILEFIRIQLDA 300


>gi|125811424|ref|XP_001361870.1| GA21043 [Drosophila pseudoobscura pseudoobscura]
 gi|54637046|gb|EAL26449.1| GA21043 [Drosophila pseudoobscura pseudoobscura]
          Length = 296

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 79/266 (29%), Gaps = 32/266 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R  GR     R + L   +   + GS  ++  +T +L     E  VP  +   + G + 
Sbjct: 22  FRCDGRSRRDYRPMELETGLVSNSSGSARLRLANTDILVGIKTEIDVPDPL-TPEFGKLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVD---LSALGSRQ---I 112
                   +T     R          +QE+   +  A  S    D   L  +  +Q   +
Sbjct: 81  FFVDCSANATPEFEGRGG-----SDLAQELVLALENAYESPLAFDYRTLCLIPGQQCWKL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHME-------DCSNKFQLSQV-------LK 158
            ID  +++  G    A    A  ALH+               ++              + 
Sbjct: 136 YIDILILECGGNLHDAVSLAAKAALHNTKLPQVTASLLDAGVTDLIISDNPYDCTRLTID 195

Query: 159 GHVAAISCGMLCGYPIVDLDYGEDST---IDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
                ++   +  Y +VD    E++      V +  +      +     +       +D 
Sbjct: 196 TVPLLVTVCKIGDYCLVDPSAEEEACSTVSIVVSVSMRNGEAFLSGSHMTG-GGAMHRDT 254

Query: 216 FFAMLNLAKDRIADLIKLQKDVISNE 241
               LNL       L  L   V+  E
Sbjct: 255 MRNCLNLGLSIGEQLNTLLAKVLKQE 280


>gi|68171420|ref|ZP_00544811.1| Polyribonucleotide nucleotidyltransferase [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|67999162|gb|EAM85821.1| Polyribonucleotide nucleotidyltransferase [Ehrlichia chaffeensis
           str. Sapulpa]
          Length = 242

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 81/224 (36%), Gaps = 31/224 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTA---TLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
           +++ A G+ +V +  T +L T      +E V       +    +   G +P   G  +KR
Sbjct: 23  IARQASGAVMVSYAGTTVLATVVTGKTKEPVDFLPLTVQFVAKSYAVGKIP---GGFLKR 79

Query: 77  EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--RTAAITGAW 134
           E   G+   R   I R+I R++R +          I I C+++  D  T     A+ GA 
Sbjct: 80  E---GKPSDRETLISRLIDRSIRPLFPAGFYDE--ISIVCNLLSYDTVTPPEVTALVGAT 134

Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--CGYPIVDLDYGEDSTIDVDANFV 192
            AL                     G V     G L   G  +++    E     +D  F+
Sbjct: 135 AALS-------------ISGVPFNGLVVGARVGYLPSEGKYLLNASADEMLCSSLDL-FL 180

Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
             +   ++ V   +E +  S+      +        ++I L K+
Sbjct: 181 SGNEDSVLMV--ESEASELSESQMLGAITFGHQHCQEVINLIKE 222


>gi|159469337|ref|XP_001692824.1| exosome complex exonuclease [Chlamydomonas reinhardtii]
 gi|158278077|gb|EDP03843.1| exosome complex exonuclease [Chlamydomonas reinhardtii]
          Length = 242

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 69/260 (26%), Gaps = 55/260 (21%)

Query: 12  REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           R +   R V   A+GS       + +L       +  +   + +   +   +        
Sbjct: 3   RTLVCERAVLDRADGSAKWTQEGSSVLAAVYGPRQAKLQKEDAERAVVEVVF-------- 54

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
               R  + G +  RS E++  I   L  V+ L       +++   V+Q DGG       
Sbjct: 55  --KPRAGLQGHED-RSLELE--IRGILEGVIPLGMFPRTSVMVVLQVLQDDGG------- 102

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYGEDSTIDVDAN 190
                           +        L    +++SC +      ++D D  E+        
Sbjct: 103 ------ALSCALNAAAAALVDAGVPLNSMFSSVSCVLTSDRRLVLDPDALEEQAAAARFC 156

Query: 191 FVMTDSGHIVE----------------------------VQGSAERATFSQDHFFAMLNL 222
           F       +                              V GS     FS D       L
Sbjct: 157 FTYPHHFDLTTAVPAAATGATTASPGADDASATAVVGESVLGSRCVGAFSGDELLDAAAL 216

Query: 223 AKDRIADLIKLQKDVISNEV 242
            +     +    +  ++  +
Sbjct: 217 CRRGCERVATFARLSLAKSL 236


>gi|328861810|gb|EGG10912.1| hypothetical protein MELLADRAFT_33545 [Melampsora larici-populina
           98AG31]
          Length = 286

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 81/263 (30%), Gaps = 33/263 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEG-SCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           +RL GR   + R ISL        +G S     G T +    +     P   R    G +
Sbjct: 23  LRLDGRATFEQRPISL----LISEDGDSVECSLGRTRVSAHVSATITRPRPDR-PFEGLL 77

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL-RS-VVDLSALGSRQ------ 111
                + P ++          GR       + R++ + L RS V+D  AL          
Sbjct: 78  QVSAEINPLASFVYEI-----GRASEDEVHLSRLLDKTLVRSGVIDREALCILAGQKVWC 132

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHV 161
           I +D   +  +G     A   A  AL +  +           +     +  +   L    
Sbjct: 133 IRVDLHFLNDEGNMLDCASVAAIAALQNFRRPDITLVGEEITVHSFDERLPIPLTLHHLP 192

Query: 162 AAISCGMLC---GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
             ++         Y ++D    E           +     I  +  S        +    
Sbjct: 193 ICLTFAFFELPASYILLDPSRLEQQLSTGTMTLTLNAQREICVINKSG-GMPSDVEEIMR 251

Query: 219 MLNLAKDRIADLIKLQKDVISNE 241
           ++ +   R+ ++  L K+ IS +
Sbjct: 252 VVRIGSRRVQEVDALIKEQISKK 274


>gi|223557963|gb|ACM90970.1| polyribonucleotide nucleotidyltransferase [uncultured bacterium
           URE12]
          Length = 316

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 84/232 (36%), Gaps = 36/232 (15%)

Query: 16  LTRR-VSKYAEGSCLVKFGDTHL---LTTATLEEKVPMW--IRNTKHGWITAEYGMLPRS 69
                ++K A G+  ++ G+T +      A+  +  P      +  +   T   G +P  
Sbjct: 21  FETGELAKQAGGAVTLRLGETIVFSACCQASKPKDTPPEFTPLSCDYREKTYAAGKIP-- 78

Query: 70  TGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR- 126
            G   KRE  +     R +EI   R+  R++R +       + +  ++  VI ADG    
Sbjct: 79  -GGFFKREGKA-----RDKEILASRLTDRSVRPLFP--DYFNTETQVNSLVISADGKNEA 130

Query: 127 -TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              +I  +  AL                     G V A+  G   G  I    + E   +
Sbjct: 131 DVLSINASSAAL-------------MISDIPFNGPVGAVRIGKKNGKFIFFPQHEERPGL 177

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +++     T  G I+ V+G  ++   S     + +  A   I  +  LQ ++
Sbjct: 178 EMELVISGTRQG-ILMVEGGGKQIPNS--DLISAMETAHPEIVKICDLQIEM 226


>gi|224045546|ref|XP_002199163.1| PREDICTED: exosome component 7 [Taeniopygia guttata]
          Length = 290

 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 84/258 (32%), Gaps = 31/258 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R   +   V     GS  VK G+T +L     E   P  +     G++ 
Sbjct: 22  LRVDGRGCEDYRCAEVETDVVSNTSGSARVKLGETDILVGIKAEMGTPK-LEKPDEGYL- 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR--ALRSVVDLSALGSR------QI 112
                    + N  + E   G + G   +I   + R  +  + VDL +L          +
Sbjct: 80  ---EFFVDCSSNSPELEGRGGEELG--TDIANTLYRIFSCENSVDLKSLCINPKEHCWVL 134

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH------------ 160
            +D  +++  G    A       AL +            + ++ ++              
Sbjct: 135 YVDVLLLECGGNIFDAISIAVKAALFNTRIPKVRVLEDEEGTKEIELSDDPYDCIRLNID 194

Query: 161 --VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
                ++   +    +VD    E++         +T  G I  ++    + +   +  F 
Sbjct: 195 EVPCVVTLSKIGYRHVVDATLQEEACSLASLLISVTSKGAITSMKKVG-KGSLDPESIFE 253

Query: 219 MLNLAKDRIADL-IKLQK 235
           M+   +     L I LQK
Sbjct: 254 MMETGQRVGKSLHIALQK 271


>gi|297847232|ref|XP_002891497.1| hypothetical protein ARALYDRAFT_891796 [Arabidopsis lyrata subsp.
          lyrata]
 gi|297337339|gb|EFH67756.1| hypothetical protein ARALYDRAFT_891796 [Arabidopsis lyrata subsp.
          lyrata]
          Length = 159

 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%)

Query: 2  RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG 57
          R  GR  +Q+R ++ +R +     GS     GDT +L      +       N +  
Sbjct: 28 REDGRTPDQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKPGTRKNENPEKA 83


>gi|170109350|ref|XP_001885882.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164639153|gb|EDR03426.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 282

 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 80/253 (31%), Gaps = 33/253 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           +RL GR   +MR  ++T       + G      G T +L     +  V         G I
Sbjct: 22  LRLDGRLSLEMRLPTITFG----PDFGWVECALGKTRVLAQVEAK-MVKPAPERPFQGTI 76

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL-RS-VVDLSAL----GSRQ-- 111
           T    +LP ++      E   GR       I RM+ + L RS  VD  +L    G R   
Sbjct: 77  TIHSEILPMASS-----EYEPGRPSDEEVTITRMLDKVLKRSDAVDKESLCILAGQRVWH 131

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQH-MEDCSNKFQLSQVLKGHVAAISC---- 166
           I +    +   G     A      AL    +  +E   ++  +          ++     
Sbjct: 132 IRLTLHFLADAGNMLDCACLAGITALQHFRRPDVEVVGDEVIVHSPWDRAPVPLAIHHTP 191

Query: 167 --------GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
                     +   P++D +  E        +  +     I  +Q          +    
Sbjct: 192 FCFTFAFFPDITTPPVLDPNQLEQRLSAGFVSIALNAQKEICVLQKLG-GVPLETEEVLT 250

Query: 219 MLNLAKDRIADLI 231
           ++N+A  +  +L 
Sbjct: 251 LVNVAVGKAKELH 263


>gi|303312521|ref|XP_003066272.1| 3' exoribonuclease family, domain 1 containing protein
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240105934|gb|EER24127.1| 3' exoribonuclease family, domain 1 containing protein
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 292

 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 82/229 (35%), Gaps = 26/229 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           +RL GR  +Q R ++LT       +  G   V+ G T ++   + E   P   R++  G 
Sbjct: 23  VRLDGRALDQFRPLNLTFG-----DEYGHVKVQLGRTSVIVRISAEVTAPRPERDSD-GI 76

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ----- 111
            T    +   +          +GRQ     ++ R + + +R  + +D  +L   +     
Sbjct: 77  FTVSIELNDMALPG-----FETGRQSDLETQLSRTLDKIVRRSNALDTESLCIAKGLSCW 131

Query: 112 -IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS-NKFQLSQVLKGHVAAISCGML 169
            +  D  ++ ADGG            L          S  K  +    +     ++   +
Sbjct: 132 NVRADVHIVDADGGLVDICCLAIMAGLLHFRIPESTVSDGKVTVYSPEEKVPVPLNLTKV 191

Query: 170 CGYPIVDLDYGEDSTIDVDANF---VMTDSGHIVEVQGSAERATFSQDH 215
                 +L Y E     +DA      +++   I+ +  + E A +++  
Sbjct: 192 PLSITFNL-YDEGKITLMDATSSEEAVSEGAVIIALDKTGEIALYTKAE 239


>gi|261335123|emb|CBH18117.1| exosome-associated protein 4, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 232

 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 84/243 (34%), Gaps = 26/243 (10%)

Query: 2   RLSGRQ-ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R  GR+  +++R   +   V   +  S  ++ G T ++      +++    R +  G + 
Sbjct: 8   RSHGRRSPDEVRYPHIVLNVLGQSYSSACIEVGSTRVVCAVHHPQQLIDEYRGS-RGRVA 66

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
                  R+     K            +++   +   +   V L  +    + +  +++ 
Sbjct: 67  CTVRRSSRA----QKHGLAFRADVTPEKDLALALEGVVEQAVVLEKIPQLLVEVVVEILA 122

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
            DGG   A  TG   AL      M D               A  +  +  G  + D    
Sbjct: 123 EDGGLWDAIATGVCAALASGGFEMYDT------------FSACGAALLPDGSIVTDPSAT 170

Query: 181 EDSTIDVDA-NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           E +T    A    M +SG++     +A+R +        ++  A          +K+VIS
Sbjct: 171 EWNTAKATAVTCAMLNSGNMCF---TAQRGSCEPTTALDLVTAALKGTL----ARKNVIS 223

Query: 240 NEV 242
           +++
Sbjct: 224 SQL 226


>gi|45184700|ref|NP_982418.1| AAL124Wp [Ashbya gossypii ATCC 10895]
 gi|44980046|gb|AAS50242.1| AAL124Wp [Ashbya gossypii ATCC 10895]
          Length = 305

 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 79/246 (32%), Gaps = 27/246 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR  +Q R++ +    S+Y  G   +  G T +    + +   P   R    G   
Sbjct: 23  LRLDGRTFDQFRDVEIELG-SEY--GDVTITMGKTKIHCRISAQIAQPYEDR-PFEGLFV 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALR--SVVDLSALGS------RQ 111
               M P +          +G   G     I RMI +A+R  S +DL  L          
Sbjct: 79  ISTEMSPMAGAQ-----FENGNNTGEDEVLISRMIEKAVRRSSAMDLEGLCIIAGSKCWA 133

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG-HVAAISCGMLC 170
           I  D   +  DGG   A+       L    +       +  +   +      A+    + 
Sbjct: 134 IRADVHFLDCDGGFIDASCIAVMTGLLHFRKPDVSVQGEQVIVHPVDEREPVALGILHIP 193

Query: 171 GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
                     ED     + N     +  I  +  + +           +L +  ++  ++
Sbjct: 194 VCVTFSFYNPED----AEVNVKGDSADEIAIIDATLKEELLR----DGVLTVTLNKNREV 245

Query: 231 IKLQKD 236
           ++L K 
Sbjct: 246 VQLSKA 251


>gi|294927834|ref|XP_002779184.1| exonuclease RRP41, putative [Perkinsus marinus ATCC 50983]
 gi|239888189|gb|EER10979.1| exonuclease RRP41, putative [Perkinsus marinus ATCC 50983]
          Length = 192

 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 56/187 (29%), Gaps = 21/187 (11%)

Query: 51  IRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110
           +       +   Y     +T +R +R         R   +QR+I  A    V        
Sbjct: 1   MARQGEAIVNVVYRTSSFATIDRKRRTTGDRNSTERQLWLQRIIQDA----VLTEMFPKS 56

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
            I +   ++Q DG                        +        +K   +A + G++ 
Sbjct: 57  CIDVHLTILQEDGS-------------ALAACVNAAAAALVDAGIPIKDMFSACTVGLVN 103

Query: 171 GY-PIVDLDYGE-DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
              PIVDL++ E +          +       E+         + + F +  NLA +   
Sbjct: 104 NQKPIVDLNHAESEGCGGAVVTVAVYQRRK--ELNYLCLEGKINIESFESAANLAIEGAV 161

Query: 229 DLIKLQK 235
             ++  +
Sbjct: 162 TAVRAMR 168


>gi|119480721|ref|XP_001260389.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
           putative [Neosartorya fischeri NRRL 181]
 gi|119408543|gb|EAW18492.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
           putative [Neosartorya fischeri NRRL 181]
          Length = 292

 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 92/263 (34%), Gaps = 40/263 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR  +Q+R +++T    +Y  G   V+ G T L+   + E   P        G  T
Sbjct: 23  VRLDGRHADQLRPLTVTFG-EEY--GHVKVQLGKTSLIVRISSEVTKPR-DDRPFDGIFT 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGS------RQI 112
               +    +         +GRQG     +  ++ R +R  + +D  +L          I
Sbjct: 79  IALELTAMGSPA-----WDNGRQGDLEAYVAHVLDRLVRHSNALDTESLCILKGVSCWSI 133

Query: 113 IIDCDVIQADGGTRTAAITGAWVALH-----DCLQH---MEDCSNKFQLSQVLKGHVAAI 164
             D  V   DG    AA  G    L      D +     +       ++   L      +
Sbjct: 134 RADVHVTDYDGNLIDAACIGVMAGLQHFRRPDAVVKDGQVVVYGLDERVPVPLNITHKPL 193

Query: 165 SCGML----CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           S            I+D    E+   + D  F M ++G +  V      + FS     A++
Sbjct: 194 SVTFHTFDEGKRVILDATRKEEQASEADVVFGMNNAGDVCFV------SKFSGSPVDALV 247

Query: 221 -----NLAKDRIADLIKLQKDVI 238
                ++A +++ ++  +    +
Sbjct: 248 FVSKSSVALEKVKEINAIIDKAL 270


>gi|307700019|ref|ZP_07637068.1| putative guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Mobiluncus mulieris FB024-16]
 gi|307614780|gb|EFN94000.1| putative guanosine pentaphosphate synthetase I/polyribonucleotide
           nucleotidyltransferase [Mobiluncus mulieris FB024-16]
          Length = 542

 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 77/245 (31%), Gaps = 38/245 (15%)

Query: 12  REISLTRRVS-KYAEGSCLVKF-GDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGM 65
           R +     +  + A GS +V   G+T +    T+    +++   +             G 
Sbjct: 21  RVLRFETGLLARQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQYAAGR 80

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR G  S    R+I R LR           Q++     I  D   
Sbjct: 81  IP---GSFFRRE---GRPGTESILAARLIDRPLRPAFVKGLRNEVQVVDTVMAIHPDEAY 134

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  + ++                      G +      ++ G  +    Y +    
Sbjct: 135 DVVAINASSMSTQLAGL-------------PFSGPIGGTRLSLIDGQWVAFPTYPQMEQA 181

Query: 186 DVDANF---VMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
             +      V+ +   I+ V+       +          +++     L  AK  I +L +
Sbjct: 182 TFNMVVAGRVVGEDVAIMMVEAGGGDNAWELIQAGQQAPTEEVVAGALEAAKPVIRELCR 241

Query: 233 LQKDV 237
            Q +V
Sbjct: 242 AQSEV 246



 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 71/213 (33%), Gaps = 23/213 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK-----H 56
           R+ GR    +R ++    V     GS L + G+T +L   T    + M  +        H
Sbjct: 342 RIDGRGCKDIRSLAAEVEVLPRVHGSALFQRGETQVL-GVTTLNMLRMEQQLDNLSPITH 400

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P  TG   +  +   R+ G       +   AL  V+         I    
Sbjct: 401 KRYMHQYNFPPYCTGETGRVGSPKRREIGHGH----LAEMALVPVIPSREEFPYAIRQVS 456

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +++ ++G +   ++  + ++L +    +        +          +S     G     
Sbjct: 457 EIMGSNGSSSMGSVCASTLSLLNAGVPLRAPIAGIAMG--------LMSEPGEDGQTHFA 508

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
            + D+   ED+  D+D     T    I  +Q  
Sbjct: 509 TLTDILGAEDAFGDMDFKVAGTKEF-ITALQLD 540


>gi|50307491|ref|XP_453725.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642859|emb|CAH00821.1| KLLA0D14993p [Kluyveromyces lactis]
          Length = 225

 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 80/246 (32%), Gaps = 46/246 (18%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
           +  T  V  + +GS +V    T ++ + +     P   +             LP      
Sbjct: 1   METTTHVLGHVDGSSVVSNSGTKVICSVSGP-MEPKSRQE------------LPTQLALE 47

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT------ 127
           +  +   G Q  R + ++  I   L  V+       + + I   V++A G +R       
Sbjct: 48  IIVKPAEGVQSTREKLMEDQIRSVLTPVLARYLHPRQFVQICLQVLEA-GESRDYTVKEV 106

Query: 128 -AAITGAWVALHDCLQHMEDC----------SNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
              +  A +AL D    +               K  +    +  +A      +     ++
Sbjct: 107 SVCVNAAVLALVDAGVPLLSMCSGTCIGITTEGKQLVVNPTESQLAKCESVHVY---CLE 163

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           L   E+  IDV  N ++ DS             +F +   F +L   +     L    + 
Sbjct: 164 LGTNENGDIDVR-NLLLLDS-----------LGSFDESQLFKVLETGEKECIRLYTELRS 211

Query: 237 VISNEV 242
           VI ++V
Sbjct: 212 VIKDKV 217


>gi|241952166|ref|XP_002418805.1| exosome complex exonuclease, putative; ribosomal RNA-processing
           protein, putative [Candida dubliniensis CD36]
 gi|223642144|emb|CAX44110.1| exosome complex exonuclease, putative [Candida dubliniensis CD36]
          Length = 331

 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 87/274 (31%), Gaps = 54/274 (19%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R+ NQ R I +    ++Y  GS  +  G T ++   T     P   R    G +T    +
Sbjct: 36  RKFNQFRPIDIKLSNTRY--GSVELSLGKTKVMVNITSRITEPYQDR-PFEGIMTINCEI 92

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QIIIDCD 117
                      +     +      I R + RA+R  + VDL  L    G +  ++IID  
Sbjct: 93  PNHIKIQSNDNDN----EDEFINLINRALDRAIRRSNAVDLENLCIIAGEKVWELIIDLQ 148

Query: 118 VIQADGGTRTAAITGAWVALHDCLQH------------MEDCSNKFQLSQVLKGHVAAIS 165
           V+  DG    +       AL D  +                  N       +K     +S
Sbjct: 149 VLNYDGNLIDSGCLAIITALLDFKKPDVTINNNNTSSNSSTSGNIIIHDDEMKRPFIELS 208

Query: 166 CGML------------------------CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVE 201
              +                            ++D D  E+S  D      M  +  +++
Sbjct: 209 ILHIPICLTFSLFNLGSKETNLKTNDIDQEIWLLDGDVMEESCRDGYLIMTMNQNHELIQ 268

Query: 202 VQ--GSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +   G       S D    ++NL  + I ++ +L
Sbjct: 269 LSKIGGGINGGVSIDG-QQLINLCHESIDEINRL 301


>gi|255086427|ref|XP_002509180.1| predicted protein [Micromonas sp. RCC299]
 gi|226524458|gb|ACO70438.1| predicted protein [Micromonas sp. RCC299]
          Length = 243

 Score = 69.4 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 67/220 (30%), Gaps = 51/220 (23%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFG-----DTHLLTTATLEEKVPMWIRNTK 55
           +R  GR     R+I++   V   + GS  V+ G      T ++     +   P    N  
Sbjct: 19  LRNDGRGRLDYRQITIDLGVVPQSSGSARVRLGIIPGETTDVIVAVKADIGTPP-KDNPT 77

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR---------------- 99
           HG I     +   +  + + R   +        E+ R + R+L                 
Sbjct: 78  HGRIQCAVELSAIADVDYMGRGGET-----LGVELARALERSLTGQTTGGMGSLADAVAG 132

Query: 100 --------------SVVDLSALGSRQ------IIIDCDVIQADGGTRTAAITGAWVALHD 139
                         + +D+S LG ++      +  D  V+ +DG    A       AL D
Sbjct: 133 ERGADARVSKHGPGAALDMSTLGIQKGKTCWLLQCDGVVLTSDGSVLDALSIATKCALAD 192

Query: 140 CLQHMEDCSNKFQLSQV----LKGHVAAISCGMLCGYPIV 175
                                L    AA S   + G P++
Sbjct: 193 AKIPKVTAVAGPDADDPAELELDDDPAACSKLDVSGVPLI 232


>gi|296812847|ref|XP_002846761.1| exosome complex exonuclease RRP45 [Arthroderma otae CBS 113480]
 gi|238842017|gb|EEQ31679.1| exosome complex exonuclease RRP45 [Arthroderma otae CBS 113480]
          Length = 292

 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 76/221 (34%), Gaps = 29/221 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+ +Q+R + LT        G+  V+ G T +L   + E   P   R+   G  T
Sbjct: 23  VRLDGRKFDQLRSVDLTFG---EEHGTVKVQLGKTAVLVRISAELTTPRPERDCD-GIFT 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------I 112
               +   +          +GR       + R + + +R  + +D  +L   +      I
Sbjct: 79  VVVELNDMALPGY-----ETGRPSELEVSLSRTLDKIVRRSNALDTESLCIAKGRICWNI 133

Query: 113 IIDCDVIQADGGTRTAAITGAWVAL----------HDCLQHMEDCSNKFQLSQVLKGHVA 162
             D  ++  DGG   A+       L           D    +     K  +S  L     
Sbjct: 134 RADIHILDCDGGLIDASCLAIMAGLLHFRLPESTVRDGEVTVFSMEEKVPVSLNLTKIPL 193

Query: 163 AISCGMLCGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVE 201
           A++  +       ++D   GE+   +      +  +G I  
Sbjct: 194 AVTFNLYDEGRIVLLDATAGEEVVSEGSLVIALDKTGEIAL 234


>gi|240282271|gb|EER45774.1| 3' exoribonuclease [Ajellomyces capsulatus H143]
          Length = 350

 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 84/289 (29%), Gaps = 64/289 (22%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFG----------DT--------HLLTTATLEEKV 47
           R+++++R I L   +   A GS  ++F            T         L+ +    + +
Sbjct: 41  RKQHELRRIFLKTGLIPSASGSAYLEFQPSSFIARSKLKTLIPPSSSLKLICSIHGPKPL 100

Query: 48  PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL 107
           P     + +  ++      P ++    +R         R  ++   +  ALR  +     
Sbjct: 101 PRSAPFSPNLLLSTHVKFAPFAS---RRRRGNIRDVNER--DLGVHLETALRGAIIAERW 155

Query: 108 GSRQIIIDCDVIQA------------------DG----GTRTAAITGAWVALHDCLQHME 145
               + I   V++                   DG          IT A  A+ D      
Sbjct: 156 PKSGLDITVTVLEGEDDCWWGDVLSPGPLGSVDGWGLMNVLAGCITVASAAIADARIDCM 215

Query: 146 DCSNKFQLSQVLKGHVAAISCGMLCGY------PIVDLDYGEDSTIDVDANFV--MTDSG 197
           D       + V   +V A                ++D D  E     V A  V  M    
Sbjct: 216 DLITGGVAAFVESPNVEASGRTKDSSQRGHGYSLVLDPDPSE-HLGIVSACVVGYMPSRD 274

Query: 198 HIVEV----------QGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            I E+           GS   A   +      ++ A+   A L +  ++
Sbjct: 275 EITELWLKGDTSNISAGSQNAAARHEALIDGAVDAARGAQAVLAEAVRE 323


>gi|325088410|gb|EGC41720.1| 3' exoribonuclease [Ajellomyces capsulatus H88]
          Length = 350

 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 84/289 (29%), Gaps = 64/289 (22%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFG----------DT--------HLLTTATLEEKV 47
           R+++++R I L   +   A GS  ++F            T         L+ +    + +
Sbjct: 41  RKQHELRRIFLKTGLIPSASGSAYLEFQPSSFIARSKLKTLIPPSSSLKLICSIHGPKPL 100

Query: 48  PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL 107
           P     + +  ++      P ++    +R         R  ++   +  ALR  +     
Sbjct: 101 PRSAPFSPNLLLSTHVKFAPFAS---RRRRGNIRDVNER--DLGVHLETALRGAIIAERW 155

Query: 108 GSRQIIIDCDVIQA------------------DG----GTRTAAITGAWVALHDCLQHME 145
               + I   V++                   DG          IT A  A+ D      
Sbjct: 156 PKSGLDITVTVLEGEDDCWWGDVLSPGPLGSVDGWGLMNVLAGCITVASAAIADARIDCM 215

Query: 146 DCSNKFQLSQVLKGHVAAISCGMLCGY------PIVDLDYGEDSTIDVDANFV--MTDSG 197
           D       + V   +V A                ++D D  E     V A  V  M    
Sbjct: 216 DLITGGVAAFVESPNVEASGRTKDSSQRGHGYSLVLDPDPSE-HLGIVSACVVGYMPSRD 274

Query: 198 HIVEV----------QGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            I E+           GS   A   +      ++ A+   A L +  ++
Sbjct: 275 EITELWLKGDTSNISAGSQNAAARHEALIDGAVDAARGAQAVLAEAVRE 323


>gi|168006598|ref|XP_001755996.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692926|gb|EDQ79281.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 319

 Score = 69.0 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 88/275 (32%), Gaps = 44/275 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR   + R  S+       A+GS LVK G+T +L    LE   P        G + 
Sbjct: 39  VRPDGRPLTRARPTSVNLGSIATADGSALVKIGNTTMLAGVKLEVITPSTAS-PNQGQVA 97

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSAL---GSRQIII- 114
            ++ M    +          GR    +  +   +  AL S   V+L  L     +   I 
Sbjct: 98  VDFQMPSICSP-----LVRPGRPAEAAWVVSEQLSNALVSSNFVNLQQLCIVPGKAAWIA 152

Query: 115 --DCDVIQADGGTRT-------------------AAITGAWVALH----DCLQ------- 142
             D   + ADG                          TG  V L     D  Q       
Sbjct: 153 YVDVYCLDADGSLLDAALLAAVAALTHLQLPAVKVTETGRVVPLKNHNGDAGQEVDSIAK 212

Query: 143 HMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEV 202
             ED   K +          A++C     + + D    E+S + +    +M  SG ++  
Sbjct: 213 KNEDQIVKSRQRLERSSMPIALTCVSHRKHLLADPSAEEESILQMSLTVIMDTSGRLISF 272

Query: 203 QGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
                    +       + L K R+A++  + ++ 
Sbjct: 273 YKPGGAVAATSATVKDCIELTKKRVAEVNSIFEEA 307


>gi|302685534|ref|XP_003032447.1| hypothetical protein SCHCODRAFT_15142 [Schizophyllum commune H4-8]
 gi|300106141|gb|EFI97544.1| hypothetical protein SCHCODRAFT_15142 [Schizophyllum commune H4-8]
          Length = 281

 Score = 69.0 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 79/252 (31%), Gaps = 34/252 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GRQ  +MR   +T        G     FG T ++     +  V         G IT
Sbjct: 22  LRLDGRQPLEMRTPEITFGPE---LGWVECAFGQTRVVAQVDAK-MVRPPPERPFDGIIT 77

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQR----MIGRALRSVVDLSAL----GSRQ- 111
               + P ++      E   GR       I R    +I R+    VD  +L    G R  
Sbjct: 78  IHSELSPMAST-----EYEIGRASEEEVVITRVLDKLIKRS--EAVDRESLCVLAGERVW 130

Query: 112 -IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDC----------SNKFQLSQVLKGH 160
            + +    +   G     A   A  AL    +   +           S +  +   +   
Sbjct: 131 HVRLTIHCLADAGNMLDCACFAAMAALKHFRRPDVEVVGDEVTIHPPSERAPVPLAINHA 190

Query: 161 VAAISCGMLCGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
              ++         P++D    E +      +  +     I  +Q     A  + D    
Sbjct: 191 PYCLTFAFFGSGAPPLLDPSQLEATLALGTLSVALNAQREICVMQKMG-GAPLAADEILG 249

Query: 219 MLNLAKDRIADL 230
           ++++A  +  +L
Sbjct: 250 LVDVAVGKAKEL 261


>gi|302903929|ref|XP_003048964.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256729898|gb|EEU43251.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 293

 Score = 69.0 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 85/264 (32%), Gaps = 35/264 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           +RL GR+ +Q R + LT       +  G   VK+G T +L   T E  VP   R    G 
Sbjct: 23  LRLDGRKFDQFRPLELTFG-----DEYGVAEVKYGKTRVLAKVTAEVTVPYSDR-PFDGV 76

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGS------R 110
            T    + P    +         R       + R++ + +R    +D  +L         
Sbjct: 77  FTITSELSPMVAPSY-----EVNRPSLEEVLLSRLLEKTVRRSGALDTESLCLIAGQKCW 131

Query: 111 QIIIDCDVIQADGGTRTAAITG------------AWVALHDCLQHMEDCSNKFQLSQVLK 158
            I +D  V+  DG    AA               + +   +   +         LS +  
Sbjct: 132 SIRVDLHVLTHDGNLTDAACLAVVAALRHFRKPDSSIEGENLTVYTPAEREPVPLSWLHS 191

Query: 159 GHVAAIS-CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
                 S  G      +VD ++ E+        + +   G I ++       +     F 
Sbjct: 192 PFCVTYSFFGEEGNQVLVDANWLEEQLRVAYCTYSLNKHGEICQIAKLG-GTSLDAPLFI 250

Query: 218 AMLNLAKDRIADLIKLQKDVISNE 241
                A +R  +L  L    ++ +
Sbjct: 251 QCAQGALNRSKELSDLVDRKLAED 274


>gi|169642585|gb|AAI60927.1| Pnpt1 protein [Rattus norvegicus]
          Length = 383

 Score = 69.0 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 11/192 (5%)

Query: 51  IRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110
           I   K       Y   P +T    K   V+ R+ G       +  +AL  V+        
Sbjct: 14  INGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHG----ALAEKALCPVIPKDF--PF 67

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
            I +  +V++++G +  A+  G  +AL D    +        +  V K +      G + 
Sbjct: 68  TIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKSNPEK---GEIE 124

Query: 171 GYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
            Y ++ D+   ED   D+D     T+ G I  +Q   +            +  A     +
Sbjct: 125 DYRLLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGVPVKIIMEAIQQATVAKRE 183

Query: 230 LIKLQKDVISNE 241
           +++     IS  
Sbjct: 184 ILQTMSKTISKP 195


>gi|67623169|ref|XP_667867.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54659037|gb|EAL37636.1| hypothetical protein Chro.40220 [Cryptosporidium hominis]
          Length = 239

 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 50/145 (34%), Gaps = 16/145 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR   +   IS    +     GS     G + ++ T    E+      ++      
Sbjct: 3   IRYDGRTNLECGAISANVGIFNSLNGSAEFSIGLSKVIATVWRPEEA-----SSNKCKSY 57

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            E  + P     R+ +   S +       I+  I R    V+D ++     I I   ++ 
Sbjct: 58  LEVILRP-----RIGQPQESHKL------IEYHILRLFEKVIDFNSFSRCVISITLQIVS 106

Query: 121 ADGGTRTAAITGAWVALHDCLQHME 145
            DG      I  A +AL D    ME
Sbjct: 107 EDGPILPVCINAAVLALIDSGIPME 131


>gi|67539882|ref|XP_663715.1| hypothetical protein AN6111.2 [Aspergillus nidulans FGSC A4]
 gi|40738896|gb|EAA58086.1| hypothetical protein AN6111.2 [Aspergillus nidulans FGSC A4]
 gi|259479699|tpe|CBF70162.1| TPA: exosome complex endonuclease 2/ribosomal RNA processing
           protein, putative (AFU_orthologue; AFUA_2G08860)
           [Aspergillus nidulans FGSC A4]
          Length = 295

 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 87/262 (33%), Gaps = 30/262 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR  +Q+R ++L+    +Y  G   V+ G T L+   + E   P        G   
Sbjct: 23  VRLDGRGADQLRPLTLSFG-EEY--GHVKVQLGKTSLVVRISAEVAKP-HDDRPFDGIFN 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGS------RQI 112
               +    +         +GRQG     +  ++ R +R  + +D  +L          I
Sbjct: 79  IAMELTAMGSPA-----WENGRQGDLETYVTNVLDRVIRHSNALDTESLCILKGVSCWTI 133

Query: 113 IIDCDVIQADGGTRTAAITGAWVALH-----DCLQH-----MEDCSNKFQLSQVLKGHVA 162
             D  +   DG    A+  G    L      D +       +     +      +     
Sbjct: 134 RADVHITDYDGNLIDASCIGVMAGLQHFRRPDAVVKDGQVIVYGLDERVPAPLNITHKPL 193

Query: 163 AISCGMLCGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +++          I+D    E+   + D    M ++G +  +      +      F    
Sbjct: 194 SVTFHTFDDGKLAILDATRKEEQASEADVVIGMNNAGDVCYLSKFQ-GSPVDALVFITKT 252

Query: 221 NLAKDRIADLIKLQKDVISNEV 242
           +LA +++  +  +    +  ++
Sbjct: 253 SLALEKVKYINGIIDKALQADL 274


>gi|156366152|ref|XP_001627004.1| predicted protein [Nematostella vectensis]
 gi|156213900|gb|EDO34904.1| predicted protein [Nematostella vectensis]
          Length = 266

 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 69/241 (28%), Gaps = 28/241 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR     R   +   +     GS  ++  DT +L     E   P  +     G +  
Sbjct: 23  RSDGRSCEDYRYFEVETGIVSNTSGSARLRLSDTDILVGVKAEIGEPN-LLTPGCGRVEF 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGS------RQII 113
                  ++     R          + ++ R + R    +S +DLS+L          + 
Sbjct: 82  FVDCSSNASVEFNGRSG-----DDLAADLMRSLDRTYSNKSAIDLSSLSIIHGQQCWVLY 136

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ-------------VLKGH 160
           +D  V++  G    A       AL++        S+     +                  
Sbjct: 137 VDTLVLECGGNLYDALSLAVKAALYNTRIPNVTVSSDGGEVELEISDDPYDCHQLPPDQM 196

Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
              I+   + G  +VD    E+   D      +   G++   Q          D    ML
Sbjct: 197 PIIITLSKIGGRHVVDASQSEELCSDCHLLVAVNSCGNVCGQQKIGCGG-LEPDTICEML 255

Query: 221 N 221
            
Sbjct: 256 E 256


>gi|145344856|ref|XP_001416940.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577166|gb|ABO95233.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 285

 Score = 68.6 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 88/246 (35%), Gaps = 25/246 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   + R  +    V+  A GS L K G T      T     P   R  + G++  
Sbjct: 24  RGDGRPLGRARARTCATGVASGALGSALAKHGATTACAGVTATIATPDATR-PEEGFLEI 82

Query: 62  EYGMLPRSTGN------RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                P+++ +      R +REA +            ++G+ L+ +       + ++ +D
Sbjct: 83  AVDHAPQASEDARDGRTRGRREAAAAACASAVA-NAAVLGKDLKQLCVERGTFAWRVRVD 141

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQH-----------------MEDCSNKFQLSQVLK 158
             V+  DGG    A+T    AL DC+                   M     +      ++
Sbjct: 142 VIVLCDDGGAADCAVTAVMAALRDCVLPEVAVTRGKVALEGDGTAMNGDGVRKGTRLDVQ 201

Query: 159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
                ++  +   + +VD    E++  + + + V+T+ G +  V         ++D    
Sbjct: 202 TMPVCLTTALYREHLLVDPTREEEALSECEVSVVLTEDGLLRGVFKPGGEVEATEDTLMK 261

Query: 219 MLNLAK 224
            +  AK
Sbjct: 262 CIAAAK 267


>gi|307111676|gb|EFN59910.1| hypothetical protein CHLNCDRAFT_132943 [Chlorella variabilis]
          Length = 301

 Score = 68.6 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 88/267 (32%), Gaps = 57/267 (21%)

Query: 13  EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
             S+   V   A+ S LVK G T  L     E   P      + G +  +  + P  + +
Sbjct: 27  PTSIGLGVVSTADASALVKVGSTAALAGIKCEVM-PASADTPEEGRLALQVELAPLCSAD 85

Query: 73  RVKREAVSGRQGG----RSQEIQRMIGRALRSVVDLSALG------SRQIIIDCDVIQAD 122
                   GR        ++++  ++  A   VVD   L       +  + +D  V+ AD
Sbjct: 86  TR-----PGRPSEAAAVLTEQLSSLLEGA--GVVDRRQLCIDPGKAAWAVYVDVYVLDAD 138

Query: 123 GGTRTAAITGA----------WVALHDCLQHMEDCSNKFQL------------------- 153
           G    A +              VA+ D  +  +  ++                       
Sbjct: 139 GSLHDACLLAVLAALSSLRLHAVAVDDTGRIQKAPADAAAAGAAGAQRQQGAADGAATAL 198

Query: 154 ----------SQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ 203
                       +L  H  +++CG+     +VD    E+  ++      + +SG I+   
Sbjct: 199 QQQPQGHQRRPLLLACHPVSLTCGLYRDRLLVDPTAEEEPLLEAAMTTTVDESGDILGFY 258

Query: 204 GSAERATFSQDHFFAMLNLAKDRIADL 230
            +   AT S++     +  AK R  ++
Sbjct: 259 KAGGSATLSRERMLECIEAAKQRSREV 285


>gi|66357222|ref|XP_625789.1| RPR46-like RNAse PH domain [Cryptosporidium parvum Iowa II]
 gi|46226980|gb|EAK87946.1| RPR46-like RNAse PH domain [Cryptosporidium parvum Iowa II]
          Length = 244

 Score = 68.6 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 50/145 (34%), Gaps = 16/145 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR   +   IS    +     GS     G + ++ T    E+      ++      
Sbjct: 8   IRYDGRTNLECGAISANVGIFNSLNGSAEFSIGLSKVIATVWRPEEA-----SSNKCKSY 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            E  + P     R+ +   S +       I+  I R    V+D ++     I I   ++ 
Sbjct: 63  LEVILRP-----RIGQPQESHKL------IEYHILRLFEKVIDFNSFSRCVISITLQIVS 111

Query: 121 ADGGTRTAAITGAWVALHDCLQHME 145
            DG      I  A +AL D    ME
Sbjct: 112 EDGPILPVCINAAVLALIDLGIPME 136


>gi|213852747|ref|ZP_03382279.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 325

 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 75/233 (32%), Gaps = 31/233 (13%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 26  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 82

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 83  IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 139

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 140 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 186

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR----IADLIKLQKDV 237
                T++  ++     +E    S+D     +    ++    I  +  L K+ 
Sbjct: 187 LVVAGTEAAVLMV---ESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEA 236


>gi|195029661|ref|XP_001987690.1| GH22060 [Drosophila grimshawi]
 gi|193903690|gb|EDW02557.1| GH22060 [Drosophila grimshawi]
          Length = 296

 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 75/248 (30%), Gaps = 32/248 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R  GR     R + L   +   A GS  ++  +T +L     E  VP  +   + G + 
Sbjct: 22  FRCDGRSRRDYRPMELETGLVSNASGSARLRLANTDILVGVKTEIDVPNPL-TPEFGKLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVD---LSALGSRQ---I 112
                   +T     R          +QE+   +  A  S    D   L  +  +Q   +
Sbjct: 81  FFVDCSANATPEFEGRGG-----SDLAQELILSLQNAYESPFAFDYRTLCLIPGQQCWKL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS--NKFQLSQVLKGHVAAISCGMLC 170
            ID  +++  G    A    A  AL +        +  +      ++  +    +   + 
Sbjct: 136 YIDILILECGGNLHDAVSLAAKAALFNTKLPRVTATLMDAGITDLIISDNPYDCTRIGID 195

Query: 171 GYPIV------------DLDYGEDSTIDVDANFVM---TDSGHIVEVQGSAERATFSQDH 215
             P++            D    E+    V     +    +  ++     +    +  +D 
Sbjct: 196 AVPLLVTVCKIGDFCLVDPSAEEEVCSTVSMVVSVSMRNNEAYLAGTHLTG-GGSMHRDT 254

Query: 216 FFAMLNLA 223
             + + L 
Sbjct: 255 MLSSIQLG 262


>gi|227875834|ref|ZP_03993960.1| polynucleotide phosphorylase/polyadenylase [Mobiluncus mulieris
           ATCC 35243]
 gi|227843582|gb|EEJ53765.1| polynucleotide phosphorylase/polyadenylase [Mobiluncus mulieris
           ATCC 35243]
          Length = 794

 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 77/245 (31%), Gaps = 38/245 (15%)

Query: 12  REISLTRRVS-KYAEGSCLVKF-GDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGM 65
           R +     +  + A GS +V   G+T +    T+    +++   +             G 
Sbjct: 21  RVLRFETGLLARQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQYAAGR 80

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR G  S    R+I R LR           Q++     I  D   
Sbjct: 81  IP---GSFFRRE---GRPGTESILAARLIDRPLRPAFVKGLRNEVQVVDTVMAIHPDEAY 134

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  + ++                      G +      ++ G  +    Y +    
Sbjct: 135 DVVAINASSMSTQLAGL-------------PFSGPIGGTRLSLIDGQWVAFPTYPQMEQA 181

Query: 186 DVDANF---VMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
             +      V+ +   I+ V+       +          +++     L  AK  I +L +
Sbjct: 182 TFNMVVAGRVVGEDVAIMMVEAGGGDNAWELIQAGQQAPTEEVVAGALEAAKPVIRELCR 241

Query: 233 LQKDV 237
            Q +V
Sbjct: 242 AQSEV 246



 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 81/246 (32%), Gaps = 23/246 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK-----H 56
           R+ GR    +R ++    V     GS L + G+T +L   T    + M  +        H
Sbjct: 342 RIDGRGCKDIRSLAAEVEVLPRVHGSALFQRGETQVL-GVTTLNMLRMEQQLDNLSPITH 400

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P  TG   +  +   R+ G       +   AL  V+         I    
Sbjct: 401 KRYMHQYNFPPYCTGETGRVGSPKRREIGHGH----LAEMALVPVIPSREEFPYAIRQVS 456

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +++ ++G +   ++  + ++L +    +        +          +S     G     
Sbjct: 457 EIMGSNGSSSMGSVCASTLSLLNAGVPLRAPIAGIAMG--------LMSEPGEDGQTHFA 508

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T    I  +Q   +      D     L  A+D    ++ 
Sbjct: 509 TLTDILGAEDAFGDMDFKVAGTKEF-ITALQLDTKLDGIPSDVLVGALGQARDARLKILD 567

Query: 233 LQKDVI 238
           +    I
Sbjct: 568 VMHAAI 573


>gi|269977469|ref|ZP_06184441.1| polyribonucleotide nucleotidyltransferase [Mobiluncus mulieris
           28-1]
 gi|306819115|ref|ZP_07452829.1| polyribonucleotide nucleotidyltransferase [Mobiluncus mulieris ATCC
           35239]
 gi|269934385|gb|EEZ90947.1| polyribonucleotide nucleotidyltransferase [Mobiluncus mulieris
           28-1]
 gi|304648091|gb|EFM45402.1| polyribonucleotide nucleotidyltransferase [Mobiluncus mulieris ATCC
           35239]
          Length = 794

 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 77/245 (31%), Gaps = 38/245 (15%)

Query: 12  REISLTRRVS-KYAEGSCLVKF-GDTHLLTTATL----EEKVPMWIRNTKHGWITAEYGM 65
           R +     +  + A GS +V   G+T +    T+    +++   +             G 
Sbjct: 21  RVLRFETGLLARQAAGSAMVTLDGETVVFAATTVGKQPKDQFDFFPLTVDVEEKQYAAGR 80

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR G  S    R+I R LR           Q++     I  D   
Sbjct: 81  IP---GSFFRRE---GRPGTESILAARLIDRPLRPAFVKGLRNEVQVVDTVMAIHPDEAY 134

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  + ++                      G +      ++ G  +    Y +    
Sbjct: 135 DVVAINASSMSTQLAGL-------------PFSGPIGGTRLSLIDGQWVAFPTYPQMEQA 181

Query: 186 DVDANF---VMTDSGHIVEVQGSAERATF----------SQDHFFAMLNLAKDRIADLIK 232
             +      V+ +   I+ V+       +          +++     L  AK  I +L +
Sbjct: 182 TFNMVVAGRVVGEDVAIMMVEAGGGDNAWELIQAGQQAPTEEVVAGALEAAKPVIRELCR 241

Query: 233 LQKDV 237
            Q +V
Sbjct: 242 AQSEV 246



 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 81/246 (32%), Gaps = 23/246 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK-----H 56
           R+ GR    +R ++    V     GS L + G+T +L   T    + M  +        H
Sbjct: 342 RIDGRGCKDIRSLAAEVEVLPRVHGSALFQRGETQVL-GVTTLNMLRMEQQLDNLSPITH 400

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                +Y   P  TG   +  +   R+ G       +   AL  V+         I    
Sbjct: 401 KRYMHQYNFPPYCTGETGRVGSPKRREIGHGH----LAEMALVPVIPSREEFPYAIRQVS 456

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY---- 172
           +++ ++G +   ++  + ++L +    +        +          +S     G     
Sbjct: 457 EIMGSNGSSSMGSVCASTLSLLNAGVPLRAPIAGIAMG--------LMSEPGEDGQTHFA 508

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D+   ED+  D+D     T    I  +Q   +      D     L  A+D    ++ 
Sbjct: 509 TLTDILGAEDAFGDMDFKVAGTKEF-ITALQLDTKLDGIPSDVLVGALGQARDARLKILD 567

Query: 233 LQKDVI 238
           +    I
Sbjct: 568 VMHAAI 573


>gi|71001078|ref|XP_755220.1| exosome complex endonuclease 2/ribosomal RNA processing protein
           [Aspergillus fumigatus Af293]
 gi|66852858|gb|EAL93182.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
           putative [Aspergillus fumigatus Af293]
 gi|159129307|gb|EDP54421.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
           putative [Aspergillus fumigatus A1163]
          Length = 292

 Score = 68.2 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 93/263 (35%), Gaps = 40/263 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR  +Q+R +++T    +Y  G   V+ G T L+   + E   P        G  T
Sbjct: 23  VRLDGRHADQLRPLTVTFG-EEY--GHVKVQLGKTGLIVRISSEVTKPR-DDRPFDGIFT 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGS------RQI 112
               +    +         +GRQG     +  ++ R +R  + +D  +L          I
Sbjct: 79  IALELTAMGSPA-----WDNGRQGDLEAYVAHVLDRLVRHSNALDTESLCILKGVSCWSI 133

Query: 113 IIDCDVIQADGGTRTAAITGAWVALH-----DCLQH-----MEDCSNKFQLSQVLKGHVA 162
             D  V   DG    AA  G    L      D +       +     +  +   +     
Sbjct: 134 RADVHVTDYDGNLVDAACIGVMAGLQHFRRPDAVVKDGQVIVYGLDERVPVPLNITHKPL 193

Query: 163 AISCGMLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +++          I+D    E+   + D  F M ++G +  V      + FS     A++
Sbjct: 194 SVTFHTFDEGKRVILDATRKEEQASEADVVFGMNNAGDVCFV------SKFSGSPVDALV 247

Query: 221 -----NLAKDRIADLIKLQKDVI 238
                ++A +++ ++  +    +
Sbjct: 248 FVSKSSVALEKVKEINAIIDKAL 270


>gi|46202937|ref|ZP_00052357.2| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
           phosphorylase) [Magnetospirillum magnetotacticum MS-1]
          Length = 218

 Score = 68.2 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 63/151 (41%), Gaps = 10/151 (6%)

Query: 81  GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDC 140
           G  G R     ++  RA+R V+  +      I +  ++ +++G +  A++ G  ++L D 
Sbjct: 2   GSPGRREIGHGKLAWRAIRPVLPAAHEFPYTIRVVSEITESNGSSSMASVCGGSLSLMDA 61

Query: 141 LQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIV 200
              +        +  +L+G   A+         + D+   ED   D+D     T+ G I 
Sbjct: 62  GVPLRRPVAGIAMGLILEGERFAV---------LSDILGDEDHLGDMDFKVAGTEEG-IT 111

Query: 201 EVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
            +Q   + A  +++     L  AKD  A ++
Sbjct: 112 SLQMDIKIAGITEEIMKVALAQAKDGRAHIL 142


>gi|123427505|ref|XP_001307267.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
           vaginalis G3]
 gi|121888886|gb|EAX94337.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
           vaginalis G3]
          Length = 203

 Score = 68.2 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 67/221 (30%), Gaps = 36/221 (16%)

Query: 13  EISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWITAEYGMLPRSTG 71
           +I +     K A GS  V+  DT +        E       +   G +        ++T 
Sbjct: 4   KIGVRLGDIKGAAGSAYVELNDTKVFAAVYGPMEPENQQQDSALTGIVDCIIEDAWQNTK 63

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
                +A+  +           +     S +         I I   +++     + A   
Sbjct: 64  EY---DALCHK-----------LLHTFSSTIFHKKYFKTLIRISITILEKGELVQDATTL 109

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
              +AL D    M             K  V + +CG++ G  +        S+       
Sbjct: 110 AGSLALIDAGIEM-------------KDFVVSCNCGLVDGKFL-----PFTSSPRSVRVA 151

Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           ++  +  IVE   +      S D     ++ A D   +LI+
Sbjct: 152 ILPSTNEIVE---TEVIGRISPDEMKEAVHTATDGCLNLIE 189


>gi|322709290|gb|EFZ00866.1| 3' exoribonuclease [Metarhizium anisopliae ARSEF 23]
          Length = 288

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 70/229 (30%), Gaps = 39/229 (17%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFG--DTHLLTTATLEEKVPMWIRNTKHGW 58
           +RL  R+  Q R + LT       +     +FG  D  ++   + E  VP +      G 
Sbjct: 23  LRLDNRKFEQFRPLELTFG-----D-----EFGVADAKIVARVSAEVTVP-FTDRPFDGI 71

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSR------ 110
            T    + P +  +         R   +   + R++ + +R    +D  +L         
Sbjct: 72  FTISSELSPMAAPS-----FEVNRPTEQEVLLSRILEKTIRRSGALDTESLCLVAGQKCW 126

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQH--MEDCSNKFQLSQVLKGHVA------ 162
            +  D  V+  DG     A      AL    +     D       +   +  VA      
Sbjct: 127 SVRADVHVLSHDGNLLDVACFAVVAALRHFRKPETTMDGETLTVYTPAEREPVALSWLHS 186

Query: 163 ----AISCGMLCGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
                 S     G  ++ D  + E+        F +   G I +V    
Sbjct: 187 PFCVTFSFFGHDGETVLMDTTWLEEQLRVTSCTFSLNKHGEICQVSKLG 235


>gi|312371957|gb|EFR20014.1| hypothetical protein AND_20780 [Anopheles darlingi]
          Length = 407

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 57/188 (30%), Gaps = 24/188 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R  GR     R + L   +  +A GS  ++  +T +L     E   P        G    
Sbjct: 131 RNDGRSNRDYRPMELELDIVVHASGSARLRLANTDILVGVKAEIDTP-HPDRPNEGKIDF 189

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------ 109
            I       P         E         ++EI   + +A  S    DLS+L        
Sbjct: 190 FIDCSANAAP---------EFEGRGGEQLAEEISNTLAKAYESQHGFDLSSLCILANHQC 240

Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHME--DCSNKFQLSQVLKGHVAAISCG 167
            ++ +D  V++  G    A       AL++           +   +  +L          
Sbjct: 241 WKLYVDVLVLECGGNLFDAISLAVKGALYNTRVPRVSTAMLDGGSMDLILTDDPFDCERL 300

Query: 168 MLCGYPIV 175
            +   P++
Sbjct: 301 KVDTVPLL 308


>gi|114765824|ref|ZP_01444917.1| polyribonucleotide nucleotidyltransferase [Pelagibaca bermudensis
           HTCC2601]
 gi|114541823|gb|EAU44860.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp.
           HTCC2601]
          Length = 250

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 79/231 (34%), Gaps = 33/231 (14%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTHLLTTAT----LEEKVPMWIRNTKHGWITAEYGMLPR 68
           ++L    V++ A+G+ +   G+T ++   T     +     +     +       G +P 
Sbjct: 16  LTLESGKVARQADGTVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQEKYYAAGKVP- 74

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--GGTR 126
             G   KREA   R   +     R+I R +R +          +++ C V+  D      
Sbjct: 75  --GGFFKREA---RPTEKETLTARLIDRPIRPLFVPGFKHE--VLVMCTVLSHDLVNDPD 127

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE----D 182
             A+  A  AL                     G +A    G   G  +++    +     
Sbjct: 128 IVAMIAASAAL-------------TISGVPFMGPIAGARVGFEDGDYVLNPTVDDMQGLR 174

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +  +   + V+  +   V +  S E    +++     +  A ++I  +I L
Sbjct: 175 NNPEQRLDLVVAGTKDAVMMVES-EAYELTEEEMLGAVTFAHEQIQPVIDL 224


>gi|115443084|ref|XP_001218349.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114188218|gb|EAU29918.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 294

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 94/269 (34%), Gaps = 42/269 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHL--LTTATLEEKVPMWIRNTKHGW 58
           +RL GR+ +Q+R ++++    +Y  G   V+ G T +  +   + E   P        G 
Sbjct: 23  VRLDGREPDQLRPLTVSFG-EEY--GHVKVQLGKTRVSLIVRISSEVTKPR-DDRPFDGI 78

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGS------R 110
            T    +    +         +GRQG     +  ++ R +R  + +D  +L         
Sbjct: 79  FTIALELTAMGSPA-----WDNGRQGDLETYVTNVLDRVVRHSNALDTESLCILKGVSCW 133

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQH--MEDCSNKFQLSQVLKGHVA------ 162
            +  D  +   DG    AA  G    L    +   +             +  VA      
Sbjct: 134 SVRADVHITDYDGNLIDAACIGVMAGLQHFRRPDAVVKDGQVIVYGVDERVPVALNITHK 193

Query: 163 AISCGML----CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
            +S          + ++D    E+   + D    M ++G +  +      + FS     A
Sbjct: 194 PLSVTFHTFDEGNHVVLDATRKEEQASEADVIIGMNNAGDVCYM------SKFSGSPVDA 247

Query: 219 ML-----NLAKDRIADLIKLQKDVISNEV 242
           M+      +A+D++ ++  +    +  ++
Sbjct: 248 MVFVRKSAVAQDKVKEINGIIDKALQADL 276


>gi|84043476|ref|XP_951528.1| ribosomal RNA processing protein 41B [Trypanosoma brucei TREU927]
 gi|14250914|emb|CAC39262.1| Rrp41p homologue [Trypanosoma brucei]
 gi|33348349|gb|AAQ15675.1| ribosomal RNA processing protein 41B [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
 gi|62358716|gb|AAX79172.1| ribosomal RNA processing protein 41B [Trypanosoma brucei]
          Length = 256

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 80/254 (31%), Gaps = 38/254 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   +MR   L        +GS     G T +          P   R   +   T 
Sbjct: 6   RRDGRTAREMRGKELRTSDLSQFDGSAWYSQGLTAVTVAING----PTAARQENYRRCTT 61

Query: 62  EYGMLPRSTGNRVKREAVSGRQ------------GGRSQEIQRMIGRALRSVVDLSALGS 109
              +   +   R+ +E  +GR              G   E+++ +   + ++V L     
Sbjct: 62  CIHVNRAA---RIPQEGGTGRLIMMERRERERCEDG---ELKQFLTSLVEAIVCLDRFPR 115

Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             +     V+  DG     A      AL D        S    +S ++    A+ + G  
Sbjct: 116 CVLEAHVTVLMDDGALFAVASNAIMCALLDAGVPCR--STIAAVSLIMCNPEASGNEG-- 171

Query: 170 CGYPIVDLDYGEDSTIDVD----ANFVMTDSGH----IVEVQG----SAERATFSQDHFF 217
                +D    E+ST +V     A FV+T++G        VQ     SA     +     
Sbjct: 172 EPEIFLDPTAVEESTDEVRSYASATFVLTNTGGEAVLASRVQARPRSSAYSRPITPKDLS 231

Query: 218 AMLNLAKDRIADLI 231
            M  LA      L 
Sbjct: 232 RMFALAAKAAETLF 245


>gi|325117803|emb|CBZ53354.1| hypothetical protein NCLIV_031410 [Neospora caninum Liverpool]
          Length = 349

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/331 (16%), Positives = 88/331 (26%), Gaps = 123/331 (37%)

Query: 1   MRLSGRQENQMREISLTR------------------------------------------ 18
           +R  GR+ +++RE+  +                                           
Sbjct: 21  LRADGRRPHELRELHFSTCVPSLLPSSSRASSASAELRTTSASDPDSSGEHEEDNLAPFV 80

Query: 19  --RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK--------------------- 55
              V  +A+G  LV FG T +         +P    N                       
Sbjct: 81  SAGVGTHADGRSLVSFGSTKVAAFVFGPRPLPSGAGNAGSRALGAASGGGGWSERGVLDD 140

Query: 56  ------------------------HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQ 91
                                      +    G+ P S   R   +           E+ 
Sbjct: 141 GIETSGGADSLLGQGGAGPGGAPERASLICRVGIAPFSGDWRA--DVARSGGAAEEHEVA 198

Query: 92  RMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF 151
             + + + SV+   A     I +   V++ DGG   A+I+ A +AL D            
Sbjct: 199 LGVRKVVESVLLADAFPRSLICLFVHVVENDGGILAASISAASLALIDAGIA-------- 250

Query: 152 QLSQVLKGHVAAISCGMLCGY--PIVDLDYGEDSTIDVDANFVM------TDSGHIVEVQ 203
                 K  VAA+SC  +     P++D    E  T        M      T     +++Q
Sbjct: 251 -----TKDFVAAMSCVYMPRQLTPLLDPPRAELQTGAPSLTLAMLISSDETGIREYMQLQ 305

Query: 204 G----SAERATFSQDHFFAMLNLAKDRIADL 230
           G      E A         ML L  D   DL
Sbjct: 306 GCNATVGEGAP-----LADMLEL--DGARDL 329


>gi|198433180|ref|XP_002130542.1| PREDICTED: similar to predicted protein isoform 1 [Ciona
           intestinalis]
          Length = 235

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 68/230 (29%), Gaps = 18/230 (7%)

Query: 13  EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           +        K A+GS     G+T ++        +    +      +  ++         
Sbjct: 18  KFQCEMNALKNADGSAFYSQGETSVMVAVYGPGDLKETKQEIDKALVEVDFR-------- 69

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
                   G      + ++R +     + + L+        I   ++Q  G   + AI  
Sbjct: 70  -----PKLGSPTVNEKYLERFVQGVCENAIMLALHPRTAFAIIVQIMQDQGSLLSCAINA 124

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
             VAL D    M+       ++   +          +    I++    E+S       FV
Sbjct: 125 VCVALQDAGVSMKHLPVAVTVALRKESESELEDATDV---LIINPTIKEESESFSILTFV 181

Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                  +    S              L  AK+   +++K  +D ++ +V
Sbjct: 182 FDSVNKNLLCMHSQ--GPLLPKQHERCLKAAKEATEEVLKFFRDSVTQKV 229


>gi|195107981|ref|XP_001998571.1| GI24046 [Drosophila mojavensis]
 gi|193915165|gb|EDW14032.1| GI24046 [Drosophila mojavensis]
          Length = 239

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 66/224 (29%), Gaps = 31/224 (13%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +RE+          +GS +   G T ++       +V     + +  ++   Y       
Sbjct: 14  LREMHCKFNPLSRCDGSVMYSQGATVVIAAVLGPIEVKTQNLSIEGSYLECNY------- 66

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
               + +A   +   R +E    I   L   +   A    ++ +    ++  G       
Sbjct: 67  ----RPKAGLPQVKERIREAA--IRDVLELALLSEAYPRAKMSLQVQELEDRGS------ 114

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDSTIDVDA 189
                   D       C         LK   AA+ C +   G  I+D +  E        
Sbjct: 115 -------IDACALNAACLAMLIGGLPLKYSFAAVHCIINEKGDFILDPEESETQHQKASF 167

Query: 190 NFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            F      G ++ VQ    +  F    F  +  + +   A++  
Sbjct: 168 TFAFDSVDGDLLLVQ---TKGAFKIAQFNDIECICRQASAEIFD 208


>gi|261326393|emb|CBH09353.1| RNase PH-like protein [Trypanosoma brucei gambiense DAL972]
          Length = 256

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 80/263 (30%), Gaps = 56/263 (21%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   +MR   L        +GS     G T +          P   R   +   T 
Sbjct: 6   RRDGRTAREMRGKELRTSDLSQFDGSAWYSQGLTAVTVAING----PTAARQENYRRCTT 61

Query: 62  EYGMLPRSTGNRVKREAVSGRQ------------GGRSQEIQRMIGRALRSVVDLSALGS 109
              +   +   R+ +E  +GR              G   E+++ +   + ++V L     
Sbjct: 62  CIHVNRAA---RIPQEGGTGRLIMMERRERERCEDG---ELKQFLASLVEAIVCLDRFPR 115

Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             +     V+  DG     A      AL D                  +  +AA+S  M 
Sbjct: 116 CVLEAHVTVLMDDGALFAVASNAIMCALLDAGV-------------PCRSTIAAVSLLMC 162

Query: 170 C-------GYP--IVDLDYGEDSTIDVD----ANFVMTDSGH----IVEVQG----SAER 208
                   G P   +D    E+ST +V     A FV+T++G        VQ     SA  
Sbjct: 163 NPEASGNEGEPEIFLDPTAVEESTDEVRSYASATFVLTNTGGEAVLASRVQARPRSSAYS 222

Query: 209 ATFSQDHFFAMLNLAKDRIADLI 231
              +      M  LA      L 
Sbjct: 223 RPITPKDLSRMFALAAKAAETLF 245


>gi|25152573|ref|NP_497279.2| EXOSome (multiexonuclease complex) component family member
           (exos-4.2) [Caenorhabditis elegans]
 gi|16950528|gb|AAL32260.1|AC006815_1 Arp2/3 complex component protein 4 [Caenorhabditis elegans]
          Length = 241

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 57/182 (31%), Gaps = 42/182 (23%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----------IRNTK 55
           R     R + +   V    +GS   +FG+T +L   T  +    W          ++  +
Sbjct: 32  RANTAFRPLCVKCGVFGAQDGSGYAEFGNTRVLAQITGPDGDGKWEEDRAKITIELKGIE 91

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
                AEY                      R+Q     +  A+ +V+  S    + I I+
Sbjct: 92  DSVKVAEY----------------------RAQ-----LASAVSAVIFASKYPGKVIEIE 124

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF-----QLSQVLKGHVAAISCGMLC 170
             V+  DGG  + A++   +A+                      + L     + S G + 
Sbjct: 125 ITVLSDDGGVLSTALSAVTLAISHSGIENMGLMASVHVAMNSDGECLTDPSTSESEGAIG 184

Query: 171 GY 172
           G 
Sbjct: 185 GV 186


>gi|296804100|ref|XP_002842902.1| 3' exoribonuclease family protein [Arthroderma otae CBS 113480]
 gi|238845504|gb|EEQ35166.1| 3' exoribonuclease family protein [Arthroderma otae CBS 113480]
          Length = 336

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 71/243 (29%), Gaps = 51/243 (20%)

Query: 2   RLSG-RQENQMREISLTRRVSKYAEGSCLVKF------GDT---------HLLTTATLEE 45
           R S  R+  ++R+I L   V   A GS  ++        +T          L+ +    +
Sbjct: 36  RPSRTRRAKELRKIYLKTGVIPSASGSAYLELHPSNPSANTSLIPPASSLKLICSVNGPK 95

Query: 46  KVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105
            +P     + +  ++A     P +     +R A       R  ++   +  ALR  +   
Sbjct: 96  PLPRSAPFSPNLLLSAHVKFAPFAN---RRRRAHIRDMNER--DLGVHLENALRGAIIGD 150

Query: 106 ALGSRQIIIDCDVIQ------------------ADG----GTRTAAITGAWVALHDC--- 140
                 + +   +++                  +DG          +T A  A+ D    
Sbjct: 151 RWPKSGLDVTVMILEGEDDRWWGDMSTAETVTGSDGWGMMNVLAHCVTVASAAIADARID 210

Query: 141 LQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF-VMTDSGHI 199
              +        +        AA S        ++D D  E   I        M     I
Sbjct: 211 CLGLVAGGVAAVVEAPSPREGAAASA----QTVVLDPDPSEHVNISSACVVGYMPSLDEI 266

Query: 200 VEV 202
            E+
Sbjct: 267 TEL 269


>gi|255725122|ref|XP_002547490.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240135381|gb|EER34935.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 225

 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 81/235 (34%), Gaps = 31/235 (13%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
           + L   + + A+GS  +  G T ++T+ +   +                      S+   
Sbjct: 6   VELRTSILENADGSAELTIGGTKVITSISGPIEPKQRQELPNQ------------SSLEI 53

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT------RT 127
           + R A  G    R + I+  +   L+SV+       + I +       D           
Sbjct: 54  IVRPAT-GLPTTREKLIEDKLRSVLQSVIISYKYPRQLIQVVVQFCNTDESVEFNVNELN 112

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDV 187
           AAI   + AL D    +                V +I+ G L   P  D+    DS   V
Sbjct: 113 AAINSCYFALIDADVALYSSFASV---------VISINSGNLIKEPTGDVLETSDSFHLV 163

Query: 188 DANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                   +  ++ ++   E   F++   F +L+ +   + +L  +Q+  I +++
Sbjct: 164 CFTIQDAQAKKLLMLESQGE---FTEQELFTVLSESVHEVENLHTIQRKFIEDKI 215


>gi|196007548|ref|XP_002113640.1| hypothetical protein TRIADDRAFT_14906 [Trichoplax adhaerens]
 gi|190584044|gb|EDV24114.1| hypothetical protein TRIADDRAFT_14906 [Trichoplax adhaerens]
          Length = 267

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 85/259 (32%), Gaps = 31/259 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL  R     R I L   V     G+  VK G + +L   T E   P  I   + G +  
Sbjct: 20  RLDSRNLYDYRPIKLQFGVEY---GTAEVKLGASRVLAVTTCELIRP--ITRPEEGRLLF 74

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSAL----GSRQ--II 113
              + P ++      + +  R       ++R + +     + +DL +L    G +   I 
Sbjct: 75  NVELSPMASPLNHSNDVIDRRIA-----LERRLEQCFVESAAIDLESLCVIAGEKVWFIR 129

Query: 114 IDCDVIQADGGTRTAAITG------------AWVALHDCLQHMEDCSNKFQLSQVLKGHV 161
           +   V+   G     A                 V   D   H  +  +   L+       
Sbjct: 130 VAIHVLDDVGNILDCASIAAIASLAHFRRPQVTVVGEDVTIHNRNEKDYIPLNIHHMPLC 189

Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
              +     G   +D    E++ ++      +     I  +Q +    T   D      N
Sbjct: 190 ITFAFFHGNGCMAIDPTDQEEAVMESKLVMALNRHREICTIQFTG-GVTLKVDQVLHCCN 248

Query: 222 LAKDRIADLIKLQKDVISN 240
           +A  +  ++IKL + ++++
Sbjct: 249 IALTKANEIIKLVQRMLND 267


>gi|225718348|gb|ACO15020.1| Exosome complex exonuclease RRP45 [Caligus clemensi]
          Length = 366

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 74/246 (30%), Gaps = 37/246 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR+ ++ R+I +         G+  V  GDT +L + +     P  +R    G +  
Sbjct: 20  RLDGRKVDERRDICIHLG---REWGTAEVSLGDTRVLASTSCSVGEPRSVR-PNEGILKT 75

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------II 113
                P S                   E+ R+I R L+    VD+ +L          I 
Sbjct: 76  HIE--PLS---------KRSMTTEALVELNRVIERVLKESKCVDMESLCISSEEKVWIIS 124

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV----------LKGHVAA 163
           ++  ++   G     A      AL    +                        +  H   
Sbjct: 125 LEMTLLSDAGNAADCASIAGLAALCHFKRPDVTLKGDKIRIHPFYGRDPVPLAIHHHPVL 184

Query: 164 ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
            +  +     ++D    E++ +D      M     I  +  + ++          +L LA
Sbjct: 185 STFALYGRVSLLDPSREEEAVMDGKVVPGMNPYREICALHLAGQKLV----DKALVLQLA 240

Query: 224 KDRIAD 229
                +
Sbjct: 241 SKAAEE 246


>gi|26452638|dbj|BAC43402.1| unknown protein [Arabidopsis thaliana]
          Length = 140

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 53/146 (36%), Gaps = 17/146 (11%)

Query: 96  RALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ 155
           +AL  V+ +       + +   V+++ G   +  I+ A +AL D    M D         
Sbjct: 4   KALEGVIMMETFPKTTVDVFALVLESGGSDLSVLISCASLALADAGIMMYDL-------- 55

Query: 156 VLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQD 214
                + A+S   +    ++D    E+   D       M     I ++  + E   ++  
Sbjct: 56  -----ITAVSVSCIGKSLMIDPVTEEEGCEDGSFMMTCMPSRYEITQLTITGE---WTTP 107

Query: 215 HFFAMLNLAKDRIADLIKLQKDVISN 240
           +    + L  D  + L ++ +D +  
Sbjct: 108 NINEAMQLCLDASSKLGEIMRDCLKQ 133


>gi|321253395|ref|XP_003192721.1| exosome complex exonuclease rrp45 [Cryptococcus gattii WM276]
 gi|317459190|gb|ADV20934.1| Exosome complex exonuclease rrp45, putative [Cryptococcus gattii
           WM276]
          Length = 281

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 84/261 (32%), Gaps = 33/261 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           RL GR   QMR++          +  G    + G T +L   +    V         G++
Sbjct: 24  RLDGRLPLQMRDVRYIFG-----DELGCVECRLGKTSILAQVSATI-VKPRDDRPYEGFL 77

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--Q 111
                + P ++         +GR G     I R++ +++R    +D  AL    G +  Q
Sbjct: 78  LINSEIGPMASSVY-----ENGRPGDDEVMIGRLLEKSIRRTEAIDREALCILAGEKVWQ 132

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN--KFQLSQVLKGHVA------- 162
           + +    +   G     A      AL    +   +         S   +  VA       
Sbjct: 133 LRLTLHFLSDSGNLLDCAALAGMAALKHFRKPDVEVIGDEVIIHSPDERAPVALAIHHTP 192

Query: 163 -AISCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
             ++        PI+D  + E           +     I  +  +   A    +    ++
Sbjct: 193 LCLTFAYFENLPPILDPSHIEAILCSGTLTLTLNAQREICVLSKAG-GAPLGAEEIMGVV 251

Query: 221 NLAKDRIADLIKLQKDVISNE 241
               D++ +L++  ++ +  +
Sbjct: 252 KFGVDKVRELVRHLEEELEKD 272


>gi|225677984|gb|EEH16268.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 256

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 67/236 (28%), Gaps = 28/236 (11%)

Query: 32  FGDTHLLTTATLEEKVPMWIRN---TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGR-- 86
            G+T ++       +           +   I+    +   S  +R K+   +G  GG   
Sbjct: 1   MGNTIVICMVHGPAEGRRSEATGPAREGAIISVAVNIAGFSGVDRKKKSLAAGAGGGGGG 60

Query: 87  -------SQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHD 139
                  S ++   +  A +  +         I ++  V+ +DG    A I    +AL D
Sbjct: 61  GGGDRQASTDLAIALRDAFQPHLHTHLYPHSTISLNISVLSSDGSLFAACINACTLALVD 120

Query: 140 CLQHMEDCSNKFQLSQVLKGHVAAIS----CGMLCG--YPIVDLDYGEDSTIDVDANF-- 191
               M        +    +    A       G +     P++D+   E+  +        
Sbjct: 121 AGIPMPGLLCACTVGMSGRASTPATPEMKRVGGINESLDPLLDMSMPEEQELPFMTVANS 180

Query: 192 --------VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                    M D      +      +     +   M  +  D    + ++   V+ 
Sbjct: 181 NPAPPGHDPMDDEEDNQMLSVVQMESGVHISYLETMFAVGFDGCKQVREILNGVLK 236


>gi|167377661|ref|XP_001734490.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165904013|gb|EDR29386.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 150

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 60/146 (41%), Gaps = 19/146 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG---W 58
           R  GR+ N++R  ++   V   A+GSCL++  ++ ++++          I+         
Sbjct: 7   RGDGREANEIRATTIKVGVISGAKGSCLIQKENSKVISSV--------QIKTQDESIDFE 58

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
            T +              E  S     +  E+Q ++ ++L S ++  +   + I +   V
Sbjct: 59  FTVKVTFAQF--------ENNSLFNNRKEIELQEILTQSLTSRINQESNKGKIICLQVFV 110

Query: 119 IQADGGTRTAAITGAWVALHDCLQHM 144
           ++ DG    + I  + +AL D    M
Sbjct: 111 MEQDGSVEDSIINSSSLALFDAEIQM 136


>gi|242022707|ref|XP_002431780.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212517105|gb|EEB19042.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 191

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 46/141 (32%), Gaps = 23/141 (16%)

Query: 10  QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
           +MR I          +GS L   GDT  L+      +V      T++  +   +      
Sbjct: 5   EMRNIHCELDPLSRPDGSALFALGDTMTLSAVYGPAEVRPQKLLTENATVEVLFK----- 59

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGR-AL----RSVVDLSALGSRQIIIDCDVIQADGG 124
                   + +G        I   I   +L    ++ +  S      I I    +Q  GG
Sbjct: 60  --------SKNGVPS-----ISDKIKEVSLNNICKTAILSSQHPRTSISIIVQEMQDYGG 106

Query: 125 TRTAAITGAWVALHDCLQHME 145
               ++  A +AL +    ++
Sbjct: 107 LLACSVNSACLALLNAGIPLK 127


>gi|225559339|gb|EEH07622.1| 3' exoribonuclease [Ajellomyces capsulatus G186AR]
          Length = 350

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 83/289 (28%), Gaps = 64/289 (22%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFG----------DT--------HLLTTATLEEKV 47
           R+++++R I L   +   A GS  ++F            T         L+ +    + +
Sbjct: 41  RKQHELRRIFLKTGLIPSASGSAYLEFQPSSFIPRSKLKTLIPPSSSLKLICSIHGPKPL 100

Query: 48  PMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL 107
           P     + +  ++      P ++    +R         R  ++   +  ALR  +     
Sbjct: 101 PRSAPFSPNLLLSTHVKFAPFAS---RRRRGHIRDVNER--DLGVHLETALRGAIIAERW 155

Query: 108 GSRQIIIDCDVIQA------------------DG----GTRTAAITGAWVALHDCLQHME 145
               + I   V++                   DG          IT A  A+ D      
Sbjct: 156 PKSGLDITVTVLEGEDDCWWGDVLSAGPLGGVDGWGLMNVLAGCITVASAAIADARIDCM 215

Query: 146 DCSNKFQLSQVLKGHVAAISCGMLCGY------PIVDLDYGEDSTIDVDANFV--MTDSG 197
           D       + V   +V                  ++D D  E     V A  V  M    
Sbjct: 216 DLITGGVAAFVESPNVETSGRTKDSSQRGHGYSLVLDPDPSE-HLGIVSACVVGYMPSRD 274

Query: 198 HIVEV----------QGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
            I E+           GS   A   +      ++ A+   A L +  ++
Sbjct: 275 EITELWLKGDTSNISAGSQNAAARHEALIDGAVDAARGAQAVLAEAVRE 323


>gi|150865099|ref|XP_001384176.2| hypothetical protein PICST_59559 [Scheffersomyces stipitis CBS
           6054]
 gi|149386355|gb|ABN66147.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 307

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 99/279 (35%), Gaps = 51/279 (18%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW-I 59
           +RL  R+ +++RE  ++   +++  G   + +G T L    + +   P   R  +  + I
Sbjct: 23  LRLDSRRFDEIREPQISLSKTEF--GYVELDWGLTKLAVRVSAQIGKPYEDRPFEGLFQI 80

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQ-- 111
             E   +  +          + +       I R+I +A+R    +DL AL    G +   
Sbjct: 81  NCEISSMAWA-------HFDNSKNSNEEILIARIIEKAIRRSNSLDLEALCIIAGEKVWN 133

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQH---MEDCSNKFQLSQVLKGHVAAISCGM 168
           I +D + +  DG        GA +ALH   +    + +      +  + +     +S   
Sbjct: 134 ITVDLNFLNFDGNFVDVGCFGAMLALHHFKKPDISIVNGGEDIIVHDIDERQPVPLSILH 193

Query: 169 L-----------------------CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
           +                           ++D +  E+   +      +  +  ++++  +
Sbjct: 194 VPICLTYSFYNPGNKESNLKGEDDDEIYLLDANLIEEQVREGSIVVTLNKNRELIQLSKN 253

Query: 206 AERATFSQDHFFAMLNLAKDRIA---DLIKLQKDVISNE 241
                 S      +L+L+   +    +L +L K VIS  
Sbjct: 254 G-GIPISA---NVLLDLSFKSMKIVDELTELIKKVISKH 288


>gi|328859073|gb|EGG08183.1| hypothetical protein MELLADRAFT_105134 [Melampsora larici-populina
           98AG31]
          Length = 285

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 76/247 (30%), Gaps = 27/247 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   Q R I +  +V   A GS  ++  D  L+      +  P    N+    +  
Sbjct: 50  RSDGRTNQQFRPIHVKTKVVSSANGSSYLETTDCKLICAVYGPK--PRTTANSSSSNLNI 107

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
            +   P S          +         + + + ++L   + L+   +    +   V+Q 
Sbjct: 108 HFKFTPFSLSTSFTSSISTLESN-----LSQALHQSLAPSLLLN--PTEFYDLHLTVLQ- 159

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG-YPIVDLDYG 180
                  +IT   +A    L                 G V  IS  +      ++D  + 
Sbjct: 160 --SHSPLSITHPILAATIAL---------GSAGVPTLGLVIGISAAISSDLELLIDPTFI 208

Query: 181 EDSTIDVDANFV-MTDSGHIVEV----QGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           E        +   +T    +  +          +    + F   L+LA+D    L  +  
Sbjct: 209 ESQNALAHLDLSYLTSIDSVTHLNFRSHLDFNLSKIDLNQFLTYLDLARDVTQSLHPIAV 268

Query: 236 DVISNEV 242
             + N++
Sbjct: 269 QALQNDL 275


>gi|225718102|gb|ACO14897.1| Exosome complex exonuclease RRP42 [Caligus clemensi]
          Length = 289

 Score = 66.7 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 82/251 (32%), Gaps = 44/251 (17%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPMWIRNTKHGW 58
           +R+ GRQ   +R + L   +  +A GS  V+  +T +L     E  E  P         +
Sbjct: 22  IRVDGRQRKDVRPMILETDIITHANGSARVQLSNTDVLVGVKAELCEHKPG---GGLEFY 78

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQ----------RMIGRALRSVVDLSAL 107
           +       P             GR G   + EI           ++  R++ +V  L   
Sbjct: 79  VDCSANASP----------VFEGRGGEDLALEIASTPSSSYSDNKLFNRSILNV--LQNR 126

Query: 108 GSRQIIIDCDVIQADGGTR-TAAITGAWVALHDCLQH---MEDCSNKFQLSQVLKGH--- 160
            +  + +D  +++ +GG     A +    AL         + D        ++ +     
Sbjct: 127 YAWILHVDVLILEVEGGNLFDVASSAVKAALFATQIPKVHIVDVDGGVPEIELSEDPDEC 186

Query: 161 --------VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFS 212
                      ++   +  + I D    E++         ++ SG I  ++      +F 
Sbjct: 187 FRLDVSNAPVLVTLNRIGHFCIADASPNEEACSSAAMVIAVSPSGRISSLRKIG-DGSFH 245

Query: 213 QDHFFAMLNLA 223
            D     L+ A
Sbjct: 246 PDTLDDALSTA 256


>gi|147770895|emb|CAN74168.1| hypothetical protein VITISV_005208 [Vitis vinifera]
          Length = 305

 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 80/250 (32%), Gaps = 32/250 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59
           +R  GR+    R  ++   V   A GS  V+ G T ++ +   E   P   + +   G  
Sbjct: 20  LRTDGRRRLTYRPFNVETGVIPQANGSARVRLGGTDVIASVKAELGKPSPSQPDKGKGRG 79

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ------II 113
             E                 SG  G    E   ++   L + +DLS+L   +      + 
Sbjct: 80  GEELSTELSGALQHCLLGGKSGAVGD--ME---VLTNVLGAGIDLSSLVVVEGKVCWDLY 134

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ-------------------LS 154
           ID  V+ +DG    A       AL +      + +                         
Sbjct: 135 IDGLVVSSDGNLLDALGAAIKAALTNTGIPKVEVAVGASGDGLPEVDISDDEYLQFDTSG 194

Query: 155 QVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
             +   +  ++   +  + IVD    E+S +    +  ++  G I  +      A     
Sbjct: 195 VPVIVTLTKVAQYHVGRHYIVDATLEEESQMSSAVSVSVSGQGRICGLIKRG-GAGLDPS 253

Query: 215 HFFAMLNLAK 224
               M+++AK
Sbjct: 254 VILDMISVAK 263


>gi|219115974|ref|XP_002178782.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409549|gb|EEC49480.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 956

 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/301 (17%), Positives = 88/301 (29%), Gaps = 72/301 (23%)

Query: 2   RLSGRQE-----NQMREISLTRRVSKYA-EGSCLVKFGDTHLLTTATLEEKV-------- 47
           R  GR         +R + +          GS L   GDT +L TATL            
Sbjct: 485 RADGRGLPGHGWKTIRPLKVQMPALPDTVHGSALFARGDTQVLCTATLGPPGDGQPMKDP 544

Query: 48  ------PMWIRNTKHGWITAEYGMLP------RSTGNRVKREAVSGRQ---GGRSQEIQR 92
                 P  +++         Y  LP        T   +  +  S +      R+ +   
Sbjct: 545 YLATDNPRRVKSGAETTAAGYYSELPVGSLRFLRTQESLVSDMNSRKVKADKERTGDSGS 604

Query: 93  M--IGRAL---------------------RSVVDLSALGSR--------------QIIID 115
           +  + RA                      R  +   AL  +               I I 
Sbjct: 605 LAEVKRAFLQYDFPPYATGTVPIGSQAHNRRAIGHGALAEKALLPVLPDAHDFPYAIRIS 664

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            +V  ++G +  A++ G  +AL D    ++       +   L   V A   G+     ++
Sbjct: 665 SEVTDSNGSSSMASVCGGTLALLDAGVPIQMPVAGVSVG--LARDVDAGEAGVH--RLLL 720

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED    +D     T  G I   Q    +     +     L LA      ++   +
Sbjct: 721 DITGTEDYYGGMDFKIAGTRKG-ITAFQLDV-KQLLPLEIVTEALQLACRGRNVILNEMQ 778

Query: 236 D 236
           D
Sbjct: 779 D 779



 Score = 37.8 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 84/257 (32%), Gaps = 49/257 (19%)

Query: 13  EISLTRRVSKY-AEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWITAEYGMLPRST 70
            I             S + + G T +L T        P   +N                T
Sbjct: 62  PIQFGTGKLARLTHSSVVGQGGSTVVLATVAHQPPDTPNGDQNN---------AASTFLT 112

Query: 71  GNRVKREAVSGRQ---GGR-------SQEI--QRMIGRALRSVVDLSALGSRQIIIDCDV 118
            +  +R    G+    GGR       + E+   R I RALR ++        ++ + C V
Sbjct: 113 VDYRQRYHGVGKIPSNGGRRDNAVLSTPEVLASRAIDRALRPLIRTEDAIDGRLHVTCSV 172

Query: 119 -----------IQADG------GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV 161
                      ++ DG         T A                    +  L+Q +   V
Sbjct: 173 QSYEVFASEVDLRQDGLLDEKDNDATNASHSTHPVAMALNTAAAALLQQGHLTQPVAATV 232

Query: 162 AAISC---GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERAT--FSQDHF 216
            A++    G++   P+   +   DS  +    +  T  GH+V ++ ++ R     S+ H 
Sbjct: 233 LAVAAHGDGVVWQDPV--PEQLADSYGE--LLYAGTADGHVVMLEWTSHRLATGLSESHM 288

Query: 217 FAMLNLAKDRIADLIKL 233
             +L LA+  I  ++ L
Sbjct: 289 TQLLELAQTSIRPVLDL 305


>gi|581223|emb|CAA25332.1| unnamed protein product [Escherichia coli]
          Length = 196

 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 62/192 (32%), Gaps = 24/192 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 16  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 72

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 73  IPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 130 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176

Query: 189 ANFVMTDSGHIV 200
                T++  ++
Sbjct: 177 LVVAGTEAAVLM 188


>gi|126342519|ref|XP_001366359.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 337

 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 57/172 (33%), Gaps = 17/172 (9%)

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            ++   P S+  R +R   SG      +E+   +  AL   V L      Q+ +   ++Q
Sbjct: 113 CDFRRAPFSS--RGRRRPPSG--SSEEKELSLALQEALGPAVQLQRYPRAQVEVSALLLQ 168

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD-Y 179
             G    A +T A +AL D    M D      LS                   ++D   Y
Sbjct: 169 DGGSALAAGVTAAGLALADAGIEMYDIVVACGLSLPWGFDPI----------WLLDPILY 218

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
            E  T       +M     +  + GS E    S D +   + L  +    L 
Sbjct: 219 EEQHTAAGLTVALMPVRNEVTGILGSGEGR--SIDCWAEGVRLGIEGCQGLY 268


>gi|145246552|ref|XP_001395525.1| exosome complex endonuclease 2/ribosomal RNA processing protein
           [Aspergillus niger CBS 513.88]
 gi|134080243|emb|CAK97146.1| unnamed protein product [Aspergillus niger]
          Length = 292

 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 95/267 (35%), Gaps = 40/267 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR  +Q+R ++++    +Y  G   V+ G T L+   + E   P        G  T
Sbjct: 23  VRLDGRGFDQLRPLNVSFG-EEY--GHVKVQLGKTSLIVRISAEVTKP-HDDRPFDGLFT 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGS------RQI 112
               +    +         +GRQG     +  ++ R +R  + +D  +L          I
Sbjct: 79  IAMELTAMGSPA-----WDNGRQGDFETYVTNVLDRVVRHSNALDTESLCILKGVSCWSI 133

Query: 113 IIDCDVIQADGGTRTAAITGAWVAL-----HDCLQH-----MEDCSNKFQLSQVLKGHVA 162
             D  V   DG    AA  G    L      D +       +     +  ++  +     
Sbjct: 134 RADVHVTDYDGNLIDAACIGIMAGLQHFRRQDAVVKDGQVIVYRLDERVPVALNITHKPL 193

Query: 163 AISCGMLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +++          I+D    E+   + D    + ++G +  V      + FS     AM+
Sbjct: 194 SVTFHTFDEGKRVIIDATRKEEQAAEADVVIGINNAGDVCFV------SKFSGSPVDAMV 247

Query: 221 -----NLAKDRIADLIKLQKDVISNEV 242
                ++A +++ ++  +    +  ++
Sbjct: 248 FVDKTSVALEKVKEINAIIDKALQADL 274


>gi|71410195|ref|XP_807405.1| ribosomal RNA processing protein 41B [Trypanosoma cruzi strain CL
           Brener]
 gi|70871397|gb|EAN85554.1| ribosomal RNA processing protein 41B, putative [Trypanosoma cruzi]
          Length = 284

 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 10/149 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR   +MR   L        +GS     G T ++         P+  R   +    
Sbjct: 6   LRRDGRGHREMRGKELRTSELTQFDGSAWYSQGLTTVVAAVNG----PVAARQEDYRKCN 61

Query: 61  AEYGM-----LPRSTG-NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
            +  +     +PR+ G +R+  E     Q     E++  +  ++++VV L       + +
Sbjct: 62  VQVYVNRAVRIPRAGGTDRLCVEEQRLEQQRMDAEVEMFLTASIQAVVRLDQFPRCVLEV 121

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQH 143
              ++  DG   + A      AL D    
Sbjct: 122 HVTILADDGALLSVATNALMCALLDAGVP 150


>gi|226293456|gb|EEH48876.1| exosome complex exonuclease RRP45 [Paracoccidioides brasiliensis
           Pb18]
          Length = 300

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 69/221 (31%), Gaps = 29/221 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR  +Q+R + ++        G   ++ G T ++   + E   P        G  T
Sbjct: 23  IRLDGRALDQLRPLMVSFG---NECGHVKLQLGKTSVVVRISAEVTKP-HPERENDGIFT 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ------I 112
               +   ++         +G Q     ++ R++ R +R    +D  +L          I
Sbjct: 79  VVVELNDMASPA-----FKTGWQSEMETQLARILDRIIRRSNALDTESLCIAAGKNCWHI 133

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK----------FQLSQVLKGHVA 162
             D  VI +DGG   +       AL                             L     
Sbjct: 134 RADVHVIDSDGGLVDSCCLAIMTALLHFRLPEAIVREGRVTVFSPEERVPSPLNLTKLPL 193

Query: 163 AISCGMLCGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVE 201
           + +  +       ++D    E++  + +    +  +G +  
Sbjct: 194 STTFNIYDEGRIIVLDAVSKEEAVSEGNLIIALNKTGELAL 234


>gi|34787346|dbj|BAC87791.1| polynucleotide phosphorylase [Streptococcus bovis]
          Length = 159

 Score = 66.3 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 23/165 (13%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHGWITAEYGMLP 67
           R + +    V+K A G+ ++++G++ +L+ A + +K+     +     +       G  P
Sbjct: 13  RPLVVEIGQVAKQANGAAVIRYGESTVLSAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFP 72

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR    +    R+I R +R +         Q+I        D     
Sbjct: 73  ---GGFNKRE---GRPTTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDEDASAPM 126

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           AA+ G+ +AL                     G +A +    + G 
Sbjct: 127 AAMFGSSLALS-------------ISDIPFNGPIAGVQVAYIDGE 158


>gi|159464609|ref|XP_001690534.1| hypothetical protein CHLREDRAFT_114378 [Chlamydomonas reinhardtii]
 gi|158280034|gb|EDP05793.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 302

 Score = 66.3 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 79/265 (29%), Gaps = 41/265 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR   + R +++       A+GS LVK G T +L    LE   P        G + 
Sbjct: 39  VRPDGRPIGRARAVTIGAGTITTADGSALVKVGRTTVLAGVRLEIMRPDETA-PAAGALV 97

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
               M P S+ +     A         +    ++G      +       R + +D  V+ 
Sbjct: 98  LSVEMAPFSSADYRPGRAPDHVSAVVEKLSSALLGSGAALCIAEGKAAWRAL-LDVYVLD 156

Query: 121 ADGGTRTAAITGAWVALHDCLQHMED-------------------------CSNKFQLSQ 155
           ADG    AA+  A  AL D                                       + 
Sbjct: 157 ADGCVLDAALLAAVAALRDTRIPAVRNTREGHYYAARGAGGRKGGKAGEAGLVEGSPTAV 216

Query: 156 VLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA--------- 206
            L     A++C +   + +VD    E+         V+  +G +  +  +          
Sbjct: 217 GLGRLPLALTCCLYGKHVLVDPTADEERLAGCGVTVVVDGAGQLQGLYKAGGRVLADTAT 276

Query: 207 -----ERATFSQDHFFAMLNLAKDR 226
                E A        A+L+ +   
Sbjct: 277 LVRCTEAARLRHRELSALLDASLVG 301


>gi|224090167|ref|XP_002308947.1| predicted protein [Populus trichocarpa]
 gi|222854923|gb|EEE92470.1| predicted protein [Populus trichocarpa]
          Length = 318

 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 83/242 (34%), Gaps = 45/242 (18%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   + R+ +L       A GS L K G T +L    +E   P    + + G I 
Sbjct: 36  IRPDARPLGRARDTTLALGAVASAHGSALAKIGSTTMLAAIKMEVMTPS-TESPEEGSIA 94

Query: 61  AEYGMLPRSTG-NRVKREAVSGRQGGRSQEIQRMIGRALRS-VVDLSAL------GSRQI 112
            ++ M P  +   R  R A +      S+++   I R + S +++L  L       +   
Sbjct: 95  IDFHMPPICSPIVRPGRPAEAAPVI--SKQLSDTISRQVNSGMINLKELSLVSGKAAWMA 152

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC--------------------------LQHMED 146
            +D   + ADG    AA+  A  A                              L   ED
Sbjct: 153 YLDIYCLDADGALFDAALLSAVGAFSHSAFIYYRSLICAVQIPIVSLNDDGKIVLVSEED 212

Query: 147 CSNKFQLSQVLKGH--------VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH 198
              K +   V K            +++C +   Y + D    E+S ++     V+  S  
Sbjct: 213 DGTKLEEEPVNKEKRKLTLSSIPFSLTCILHKNYILADPTAEEESIMETLVTVVLDSSSR 272

Query: 199 IV 200
           +V
Sbjct: 273 LV 274


>gi|322709903|gb|EFZ01478.1| 3' exoribonuclease [Metarhizium anisopliae ARSEF 23]
          Length = 283

 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 56/191 (29%), Gaps = 34/191 (17%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVK--------FGDTHLLTTATLEEKVPMWIRNTKHG 57
           R  N +R   L   V+  A GS  ++        FG      T      +P     + H 
Sbjct: 31  RNNNDVRPFYLKTGVTPSASGSAYLEIDQSTGSGFGM-KFTCTVHGPRSLPRSAPFSPHM 89

Query: 58  WITAEYGMLPRSTGNRVK--REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
            I+      P +T  R    R+A          ++   +  ALR  V         + + 
Sbjct: 90  VISTHVKYAPFATRQRKGYLRDASER-------DLSIHLETALRGAVIADRWPKSGVEVV 142

Query: 116 CDVIQAD---------G-------GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG 159
             +++ D         G          +  IT A  A+ D      D +     + V   
Sbjct: 143 VTIVEGDVSRQTTIDEGHEEWNTMSILSGCITVASAAIADAGIDSVDVAAGGVAALVQDE 202

Query: 160 HVAAISCGMLC 170
            +      ++ 
Sbjct: 203 GIGKEPVLVMD 213


>gi|213417627|ref|ZP_03350761.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 196

 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 60/188 (31%), Gaps = 24/188 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 26  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 82

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 83  IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 139

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 140 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 186

Query: 189 ANFVMTDS 196
                T++
Sbjct: 187 LVVAGTEA 194


>gi|289810801|ref|ZP_06541430.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 210

 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 66/199 (33%), Gaps = 25/199 (12%)

Query: 14  ISLTRRVS-KYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG- 71
           ++L   +  + A  + +V   DT +  T   ++K            +T  Y     + G 
Sbjct: 27  VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGR 83

Query: 72  ---NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +  +RE   GR       I R+I R +R +     +   Q+I     +         
Sbjct: 84  IPGSFFRRE---GRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 140

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           A+ GA  AL                     G + A   G +    +++    E     +D
Sbjct: 141 AMIGASAALSLSGI-------------PFNGPIGAARVGYINDQYVLNPTQDELKESKLD 187

Query: 189 ANFVMTDSGHIVEVQGSAE 207
                T++  ++ V+  AE
Sbjct: 188 LVVAGTEAA-VLMVESEAE 205


>gi|19112052|ref|NP_595260.1| exosome subunit Rrp46 (predicted) [Schizosaccharomyces pombe 972h-]
 gi|29336579|sp|O42894|RRP46_SCHPO RecName: Full=Exosome complex component rrp46; AltName:
           Full=Ribosomal RNA-processing protein 46
 gi|2956749|emb|CAA17913.1| exosome subunit Rrp46 (predicted) [Schizosaccharomyces pombe]
          Length = 226

 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 78/225 (34%), Gaps = 30/225 (13%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
              +   ++GS   K G   ++        V   IR+ +    T E  + P S       
Sbjct: 3   RIGILSRSDGSSEWKQGSARVICGVNGPIDVK--IRDERLNKATVEVLVQPVSGVAETLE 60

Query: 77  EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG-GTRTAAITGAWV 135
           + +S           R++G  L   + L+      I +   +I+ DG  T  A I GA +
Sbjct: 61  KMIS----------SRIVG-ILEDAIFLNTYPRTLIQVSIQIIEEDGTDTLAAVINGAVL 109

Query: 136 ALHDCLQHME--DCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
           AL D    ++   C+        +      +   +     I+ + Y            + 
Sbjct: 110 ALLDAGISLKYIPCAINCHWKNKITQDEPDVDGTINKLESIITICYS-----------IS 158

Query: 194 TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
           ++   ++ ++         ++ FF +L  A     ++ K  K+++
Sbjct: 159 SEPAKLIFLE---TAGPIPEEDFFRVLETAPLHAEEVSKKMKELL 200


>gi|194381296|dbj|BAG58602.1| unnamed protein product [Homo sapiens]
          Length = 164

 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 47/148 (31%), Gaps = 14/148 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R + +   V     GS  VK G T +L     E   P  +     G++ 
Sbjct: 22  LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QI 112
                   +T     R            EI   + R    +S VDL  L          +
Sbjct: 81  FFVDCSASATPEFEGRGG-----DDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC 140
            +D  +++  G    A       AL + 
Sbjct: 136 YVDVLLLECGGNLFDAISIAVKAALFNT 163


>gi|294461855|gb|ADE76485.1| unknown [Picea sitchensis]
          Length = 302

 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 87/272 (31%), Gaps = 38/272 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   + R  SL       A+GS + K G T +L    LE   P        G I 
Sbjct: 33  VRPDARPLGRARATSLALGTVPTADGSAMAKIGHTTMLAGVKLEVMTPAAEAL-DEGRIA 91

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSR------QI 112
            ++ M P  + +        GR    +  I   +   L S  V++L  L           
Sbjct: 92  VDFQMPPICSPD-----VRPGRPVDAAAVISEQLSNVLASSGVINLKELSISKGQAAWMA 146

Query: 113 IIDCDVIQADG---GTRTAAITGAWVALHDCLQHMEDCSNKFQLS--------------- 154
            +D   + ADG        A  GA+  L      M +      LS               
Sbjct: 147 YLDIYCLDADGALFDAALLAAIGAFAHLRFPAVSMTEEGKVIPLSGDTVLEDGNKEQPKV 206

Query: 155 ------QVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
                   L     +++C +   + + D    E+S        V+  SG +V        
Sbjct: 207 QEQRQQLTLGKVPFSLTCMLYKKHILADPTAEEESVFQTTITVVLDPSGRLVSFYKPGGS 266

Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           A  S       + L K R+ +L K+  + +S 
Sbjct: 267 ALASTSTIQDCVALTKYRVKELQKILDEALSE 298


>gi|84998004|ref|XP_953723.1| 3' exonuclease, exosome component [Theileria annulata]
 gi|65304720|emb|CAI73045.1| 3' exonuclease, exosome component, putative [Theileria annulata]
          Length = 254

 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 85/244 (34%), Gaps = 41/244 (16%)

Query: 7   QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY-GM 65
             N++R + +    S    GSC++  G+T       L  K+     +T++G  T E    
Sbjct: 12  SFNELRPLEIKMSTSSTFSGSCIINLGNTIAKCLVNLP-KISTKKASTEYGQFTLELTSN 70

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
               T   +  E +              I       + L    S+ I     V   DGG 
Sbjct: 71  YLFHTPKYL--ETLKS-----------HIIETFERHILLQNYPSQIIEAYIIVSNDDGGL 117

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM---LCGYPI--VDLDYG 180
             A I G  +AL DC   + D              ++A S  +     G  +  +D +  
Sbjct: 118 LPALIMGMCLALIDCGIQVYDV-------------ISACSVCIFKDHDGNLVTGLDFNKT 164

Query: 181 EDSTIDV-DANFVMTDSGHIVEVQGSA---ERATFSQDHFFAMLNLAKDRIA----DLIK 232
           E S     D  F + + G+   ++  A    +  +S +H    L +A+        +L K
Sbjct: 165 ELSYYQSKDPYFTVVNLGYCCNLRNVAFLESKGNYSAEHIGKALEVAEVACNLISGELFK 224

Query: 233 LQKD 236
           + K+
Sbjct: 225 ILKE 228


>gi|225713980|gb|ACO12836.1| Exosome complex exonuclease RRP45 [Lepeophtheirus salmonis]
          Length = 363

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 75/249 (30%), Gaps = 45/249 (18%)

Query: 2   RLSGRQENQMREISL----TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG 57
           RL GR+ ++ R++++        ++       VK G+T +L + +     P   R    G
Sbjct: 20  RLDGRKLDERRDLTIHFGREWGTTE-------VKLGETRVLASTSCSVGEPQSSR-PNEG 71

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ---- 111
            +             R++  A          E+ R+I R L+    +D+ +L        
Sbjct: 72  VLKI-----------RMEPLAKRSMTTEALVELNRVIERVLKQSKCLDMESLCISSEEKV 120

Query: 112 --IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV----------LKG 159
             I ++  ++   G     A      AL    +                        +  
Sbjct: 121 WIISLEMTILNDAGNAADCASVAGLAALCHFKRPDVTLKGDKIRIHPFYERDPVSLAVHH 180

Query: 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
           H    +  +     + D    E+  +D      M     I  +  + ++    +     +
Sbjct: 181 HPVLSTFALYGRVALSDPSRDEEVVMDGKVVLGMNPYREICALHLAGQKLVDKR----LV 236

Query: 220 LNLAKDRIA 228
           L LA     
Sbjct: 237 LQLASKAAE 245


>gi|195330095|ref|XP_002031744.1| GM23883 [Drosophila sechellia]
 gi|194120687|gb|EDW42730.1| GM23883 [Drosophila sechellia]
          Length = 223

 Score = 65.1 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 72/226 (31%), Gaps = 31/226 (13%)

Query: 9   NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
           + +R++          +GS +   G T L+       +V     +    ++   Y     
Sbjct: 6   DTLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNY----- 60

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
                 + +A   +   R +E    I   L   +   A    ++ +    ++  G     
Sbjct: 61  ------RPKAGLPQVIDRIREAA--IRDVLELALLSEAHPRSKMSVQIQELEDRGSIDAC 112

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDSTIDV 187
           A+  A +A+                   LK   AA+   +   G  ++D D  E      
Sbjct: 113 AVNCACLAM-------------LIGGLPLKYSFAAVHAIINEQGEYVLDPDQSETQHQRA 159

Query: 188 DANFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
              F      G+++ V+    + +F    F  +  L +   A++ +
Sbjct: 160 SFTFAFDSVEGNLLLVR---TKGSFKIAQFNDIECLCRAASAEIFQ 202


>gi|316963953|gb|EFV49297.1| proline synthetase [Trichinella spiralis]
          Length = 249

 Score = 65.1 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 11/103 (10%)

Query: 26  GSCLVKFGDTHLLTTATLEEKV------PMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           GS  ++   T +L T     +        M +     G +T      P +   R++R   
Sbjct: 146 GSAYIEMNKTKILCTVIGPREAHKSSEDSMGMLLANCGKLTVSVRFAPFAKTPRLQR--- 202

Query: 80  SGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             ++   S+E  +  +I +A  SVV +      +I++   ++Q
Sbjct: 203 RRKEVALSEEQNLATLIQQAFDSVVLVERYPKAEIVLIISILQ 245


>gi|322692770|gb|EFY84660.1| 3' exoribonuclease [Metarhizium acridum CQMa 102]
          Length = 283

 Score = 65.1 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 59/200 (29%), Gaps = 36/200 (18%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVK--------FGDTHLLTTATLEEKVPMWIRNTKHG 57
           R  N +R   L   V+  A GS  ++        FG      T      +P     + H 
Sbjct: 31  RNNNDVRPFYLKTGVTPSASGSAYLEIDQSTGSGFGM-KFTCTVHGPRSLPRSAPFSPHM 89

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            I+      P +T  R +R  +        +++   +  ALR  V         + +   
Sbjct: 90  VISTHVKYAPFAT--RQRRGYLR---DASERDLSIHLETALRGAVIADRWPKSGVEVVVT 144

Query: 118 VIQAD---------G-------GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV 161
           +++ D         G          +  IT A  A+ D      D +     + V    +
Sbjct: 145 IVEGDVTRQTTIDEGLQEWNTMSILSGCITVASAAIADAGIDSVDVAAGGVAALVQDEGI 204

Query: 162 AAISCGMLCGYPIVDLDYGE 181
                       +VD    E
Sbjct: 205 G------KEQELVVDPAVSE 218


>gi|225684062|gb|EEH22346.1| exosome component 9 [Paracoccidioides brasiliensis Pb03]
          Length = 295

 Score = 65.1 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 72/221 (32%), Gaps = 29/221 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR  +Q+R + ++        G   ++ G T ++   + E   P        G  T
Sbjct: 23  IRLDGRALDQLRPLMVSFG---NECGHVKLQLGKTSVVVRISAEVTKP-HPERENDGIFT 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------I 112
               +   ++         +G Q     ++ R++ R +R  + +D  +L          I
Sbjct: 79  VVVELNDMASPA-----FKTGWQSEMETQLARILDRIIRRSNALDTESLCIAAGKNCWHI 133

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVA 162
             D  VI +DGG   +       AL                +     +      L     
Sbjct: 134 RADVHVIDSDGGLVDSCCLAIMTALLHFRLPEAIVREGRVTVFSPEERVPSPLNLTKLPL 193

Query: 163 AISCGMLCGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVE 201
           + +  +       ++D    E++  + +    +  +G +  
Sbjct: 194 STTFNIYDEGRIIVLDAVSKEEAVSEGNLIIALNKTGELAL 234


>gi|171690730|ref|XP_001910290.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945313|emb|CAP71425.1| unnamed protein product [Podospora anserina S mat+]
          Length = 287

 Score = 65.1 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 50/161 (31%), Gaps = 29/161 (18%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKF-GDT-------HLLTTATLEEKVPMWIRNTKHG 57
           R  N +R+  L   V+  A GS  ++F G +        L  T      +P     + H 
Sbjct: 36  RAPNIIRKTFLKTGVTPSASGSAYLEFEGSSKSGVSGLKLSCTVHGPRSLPRSSPFSPHI 95

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            ++A     P +T  R            R  ++   +  ALR  +         + I   
Sbjct: 96  VLSAHVKYAPFATKQRR---GYLRDPSER--DLGTHLETALRGAIIADRWPKSGVDIIIS 150

Query: 118 VIQADG----------------GTRTAAITGAWVALHDCLQ 142
           +I+ D                    +  IT A  AL D   
Sbjct: 151 IIEGDQDRETSKSQGDETWDMMNVLSGCITVASAALADAGI 191


>gi|312071046|ref|XP_003138427.1| 3' exoribonuclease [Loa loa]
 gi|307766409|gb|EFO25643.1| 3' exoribonuclease [Loa loa]
          Length = 307

 Score = 65.1 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 88/289 (30%), Gaps = 63/289 (21%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R  GR     R + +   V     GS  V+ G T LL     E    E + ++ RN  +
Sbjct: 21  LRADGRSPFDYRPVIVQTGVLATTNGSARVRIGSTDLLIGVKAELISVENIALY-RNRLN 79

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD------------L 104
            ++       P     R   E           E+      AL +  D            L
Sbjct: 80  FFVDCSANATPL-FAGRGGEEFAD--------ELSA----ALDAAYDNNYVLPDLKKLIL 126

Query: 105 SALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDC----LQHMEDCSNKFQLSQVLKGH 160
           S +   ++ +D  ++Q DG    AA  G   AL D     +        K+ +       
Sbjct: 127 SPMHVWKLFVDIVLLQCDGNVIDAAGLGVKAALKDTEISKVIVRPADEGKYTIDLPDDNT 186

Query: 161 VAA---------ISCGMLCGYPIVDLDYGEDST--------------IDVDAN-----FV 192
           V           +S   L    IVD    E++                D D N      V
Sbjct: 187 VWKLNTSRVPLFVSVNRLGSAKIVDNSLAEEACTRTSVWIAAAPHFVSDTDHNKSNQSVV 246

Query: 193 MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
             + G I  ++      T   D    M+++    +  L +     + +E
Sbjct: 247 KRNGGVITFMRQCG-GGTLEVDSLEEMISIGLKAVRQLHEALDRRLMDE 294


>gi|313230944|emb|CBY18942.1| unnamed protein product [Oikopleura dioica]
          Length = 441

 Score = 65.1 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 88/269 (32%), Gaps = 39/269 (14%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR   +MR+ S+         G+C+   G+T  L   +     P  +R    G I  
Sbjct: 23  RLDGRSYLEMRKCSIEFG---QEFGTCVASIGNTRALAHVSCSLDRPSEVR-PSEGKIVF 78

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QII 113
           +  + P ++ +         ++   + ++ R++ +A+     +D+  L  R       + 
Sbjct: 79  KVELPPLASPS-----FELNKKSAFAIDLNRLLEKAIVQSRCIDIEELCVRAGEQCWTLR 133

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAA 163
           ++   +  +G    A    A  AL    +           +     K      L      
Sbjct: 134 VEVTALNHEGNLSDALCLAAMGALMHFKRPEVTVDGHDVKIHTADEKEPTRLTLHHKPFC 193

Query: 164 ISCGMLCGY-----------PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFS 212
           ++ G +               ++D    E+  +    +  +     I  ++ S  R    
Sbjct: 194 VTIGYIEDGRTDSDGDRQKILVLDPVRQEEQVLSGIISIAINKHREICAMRVSGNRE-LD 252

Query: 213 QDHFFAMLNLAKDRIADLIKLQKDVISNE 241
                +   +A  ++ DL  L +  I  +
Sbjct: 253 CSQILSCTKIAAAKVKDLQSLIESAIKKD 281


>gi|306836337|ref|ZP_07469316.1| polyribonucleotide nucleotidyltransferase [Corynebacterium accolens
           ATCC 49726]
 gi|304567772|gb|EFM43358.1| polyribonucleotide nucleotidyltransferase [Corynebacterium accolens
           ATCC 49726]
          Length = 493

 Score = 65.1 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 8/134 (5%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
            R+ GR    +R++S+   +   A GS L + G+T +L   TL+    E+    +   + 
Sbjct: 364 FRIDGRGLTDIRDLSVEVDLVPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPIES 423

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
                 Y   P STG   +  +   R+ G       +  RAL  V+         I    
Sbjct: 424 KRYMHHYNFPPFSTGETGRVGSPKRREIGHG----ALAERALLPVIPSREDFPYAIRQVS 479

Query: 117 DVIQADGGTRTAAI 130
           + + ++G T   ++
Sbjct: 480 EALGSNGSTSMGSV 493



 Score = 51.6 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 70/246 (28%), Gaps = 36/246 (14%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R +      +++ A+GS      D T LL T T      E    +             G 
Sbjct: 32  RTVRFETGQLARQADGSVTTYLDDDTMLLATTTASNQPRENFDFFPLTVDVEERMYAAGK 91

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q++I       +   
Sbjct: 92  IP---GSFFRRE---GRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSQDPEEYY 145

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI GA  A       +       +++ +              G  +   ++ +    
Sbjct: 146 DVVAINGASAATQLSGLPVSGAVGGVRMALIADDK-------HPEGQWVAFPNHEQHERA 198

Query: 186 DVDANF----VMTDSGHIVEVQGS------------AERATFSQD-HFFAMLNLAKDRIA 228
             +       V       V +               A+ A   Q+      L  AK  I 
Sbjct: 199 LFEMVVAGRIVTKGRKEDVAIMMVEAGAGTNVAERIADGAPAPQEAAVAEGLEAAKPFIK 258

Query: 229 DLIKLQ 234
            L + Q
Sbjct: 259 TLCEAQ 264


>gi|291000993|ref|XP_002683063.1| exosome complex exonuclease RRP43 [Naegleria gruberi]
 gi|284096692|gb|EFC50319.1| exosome complex exonuclease RRP43 [Naegleria gruberi]
          Length = 279

 Score = 65.1 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 93/263 (35%), Gaps = 36/263 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  N +RE  ++       EGS LVK G+T ++     E  +P      K+G + 
Sbjct: 27  VRPDGRPLNMIRETVVSSGSLGNCEGSSLVKTGNTSVVCGIKAEVMIPT-EDAPKNGKVV 85

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEI---QRMIGRALRS------VVDLSALG--- 108
             +        +            G  +EI   + +I + L        V+DLS L    
Sbjct: 86  ISFDFPSICAAD----------VTGNWEEINEKKSVIQQRLAGIFYNCNVMDLSQLCIEE 135

Query: 109 SRQIII---DCDVIQADGGTRTAAITGAWVALHD----CLQHMEDCSNKFQLSQ-----V 156
            + + +   D   ++ DG    AA+     AL +      Q  +D               
Sbjct: 136 GKAVWVLYADLYCLENDGNVFDAALIALLTALKNVSLPTCQITKDDEAIVTNENSNIKLQ 195

Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
           L  +   +S G L  + IVD    E+S +      V  +   +  +       +  Q   
Sbjct: 196 LDHYPIPLSFGNLSEFTIVDPTSEEESLLAWKLTIVYNERNELCSLFKPG-GKSIKQSTL 254

Query: 217 FAMLNLAKDRIADLIKLQKDVIS 239
              L +AK R   +I + +  +S
Sbjct: 255 NYCLEMAKKRTGKIISMIEKSVS 277


>gi|254580403|ref|XP_002496187.1| ZYRO0C12496p [Zygosaccharomyces rouxii]
 gi|238939078|emb|CAR27254.1| ZYRO0C12496p [Zygosaccharomyces rouxii]
          Length = 224

 Score = 65.1 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 84/243 (34%), Gaps = 44/243 (18%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
           I  +  +  + +GS   +   T ++ + T   +            +              
Sbjct: 3   IIASTGILNHVDGSSEFESHSTKVVCSVTGPIEPKARQELPTQLAL------------EI 50

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT-------- 125
           + R A  G    R + I+  +   L  ++       R   I   V++A G          
Sbjct: 51  IVRPA-KGVPNTREKLIEDKLRGVLTPLIARYLYPRRLCQITFQVMEA-GEPELEFSQRE 108

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG--EDS 183
            +  I  A +AL D    +   +             +++   ++ G  +VD +    ++S
Sbjct: 109 LSCCINAAVLALVDSGIGLLAMA-------------SSVPLAIIKGQLVVDPNAQQLQES 155

Query: 184 TIDVDANFVMTDSGH----IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                    +T+SG     I+ +  +     F+Q+  F +L+  ++R   L++  + V+ 
Sbjct: 156 QSVHTLALEITESGKNVQNILLLDSTG---AFTQNELFQILSQGEERCLTLVQELRKVLG 212

Query: 240 NEV 242
           + +
Sbjct: 213 DRI 215


>gi|71651570|ref|XP_814460.1| ribosomal RNA processing protein 41B [Trypanosoma cruzi strain CL
           Brener]
 gi|70879434|gb|EAN92609.1| ribosomal RNA processing protein 41B, putative [Trypanosoma cruzi]
          Length = 285

 Score = 64.7 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 63/183 (34%), Gaps = 26/183 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR   +MR   L        +GS     G T ++         P+  R   +    
Sbjct: 6   LRRDGRGHREMRGKELRTSELTQFDGSAWYSQGLTTVVAAVNG----PVAARQEDYRKCG 61

Query: 61  AEYGM-----LPRSTG-NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
            +  +     +PR+ G +R+  E     Q     E++  +  ++++VV L       + +
Sbjct: 62  VQVYVNRAVRIPRAGGTDRLCVEEQRVEQRRMDAEVEMFLTASIQAVVRLDQFPRCVLEV 121

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CG 171
              ++  DG   + A      AL D                  +  VAA+S   L    G
Sbjct: 122 HVTILADDGALLSVATNALMCALLDAGV-------------PCRTTVAAVSIVALTPEDG 168

Query: 172 YPI 174
            P+
Sbjct: 169 SPV 171


>gi|195571989|ref|XP_002103983.1| GD18693 [Drosophila simulans]
 gi|194199910|gb|EDX13486.1| GD18693 [Drosophila simulans]
          Length = 223

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 71/224 (31%), Gaps = 31/224 (13%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R+++         +GS +   G T L+       +V     +    ++   Y       
Sbjct: 8   LRQMNCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNY------- 60

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
               + +A   +   R +E    I   L   +   A    ++ +    ++  G     A+
Sbjct: 61  ----RPKAGLPQVIDRIREAA--IRDVLELALLSEAHPRSKMSVQIQELEDRGSIDACAV 114

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC-GYPIVDLDYGEDSTIDVDA 189
             A +A+                   LK   AA+   +   G  ++D D  E        
Sbjct: 115 NCACLAM-------------LIGGLPLKYSFAAVHAIINEQGEYVLDPDQSETQHQRASF 161

Query: 190 NFVMTD-SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            F      G+++ V     + +F    F  +  L +   A++ +
Sbjct: 162 TFAFDSVEGNLLLV---KTKGSFKIAQFNDIECLCRAASAEIFQ 202


>gi|308801345|ref|XP_003077986.1| putative polynucleotide phosphorylase (ISS) [Ostreococcus tauri]
 gi|116056437|emb|CAL52726.1| putative polynucleotide phosphorylase (ISS) [Ostreococcus tauri]
          Length = 615

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 52/149 (34%), Gaps = 8/149 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW----IRNTKHG 57
           R  GR    +R I+    +     GS L   G+T  +  ATL           I  T+  
Sbjct: 428 RQDGRTTRMVRPIACEAGLLPRTHGSALFTRGETQAIGVATLGGNQDAQRVDDIEKTEDK 487

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +    S R+ G       +  RAL  ++           ++  
Sbjct: 488 RFMLHYFFPPSSVGETGRIGGASRREVGHG----NLAERALTPIIPSQEEFPFVCRMEST 543

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMED 146
           + +++G +  A +    +AL D    ++ 
Sbjct: 544 ITESNGSSSMATVCAGTLALLDAGVPLKR 572



 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 73/234 (31%), Gaps = 38/234 (16%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEK-------VPMWIRNTKHGWITAEYG 64
            + L    V   A G+ +   GDT +  TA    +       VP+ +  ++       + 
Sbjct: 81  RVRLETGRVGAQANGAVMASEGDTVIYATACASRELTGDGSFVPLTVNYSE------RFS 134

Query: 65  MLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
              R+ G   KR+   G    R     R++ R +R ++        Q++        +  
Sbjct: 135 AAGRTAGGFRKRD---GAVSERETLKARLVDRPIRPMIPKGWGYDTQVLQWLMSFDGERS 191

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--YPIVDLDYGED 182
           T             D L      +        LK  V  +  G++ G   PIV+    ++
Sbjct: 192 T-------------DALAITAASAALAVSDIPLKKPVVGVRVGLMPGSDEPIVNPS--QE 236

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              +   + V+  +   V +         + D     +         + K  K+
Sbjct: 237 QMKESRLDLVLAGTDEAVLM-IEGFCDFLTTDEMLRAIA---KGHEAVSKACKE 286


>gi|212532847|ref|XP_002146580.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
           putative [Penicillium marneffei ATCC 18224]
 gi|210071944|gb|EEA26033.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
           putative [Penicillium marneffei ATCC 18224]
          Length = 294

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 91/262 (34%), Gaps = 30/262 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR  +  R +S+T    +Y  G   V+ G T L+   + E   P   R +   ++ 
Sbjct: 23  IRVDGRDADAFRPLSVTFG-EEY--GHVKVQLGQTSLVVRISAEVSKPRDDRQSDGTFLI 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGS------RQI 112
           A   M   + G+       + RQ      + R++ R +R  + +D  +L          I
Sbjct: 80  A---MELTAMGS---PAWENLRQSEFETYVSRVLDRVIRHSNALDTESLCILKGKSCWNI 133

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK----------FQLSQVLKGHVA 162
             D  V   DG    +A  G    L    +   +  +             +   +     
Sbjct: 134 RADVHVTNFDGNLIDSACIGIMAGLQHFRRPDIEVKDGQVTVFGINERVPVPLNITHKPL 193

Query: 163 AIS--CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           AI+          I+D    E+     D    + ++G    V  SA  +  S        
Sbjct: 194 AITFQSFHEGKVLILDATRKEEQASKGDLIIALNNTGETCAVYKSA-GSPVSALEVINKT 252

Query: 221 NLAKDRIADLIKLQKDVISNEV 242
           NLA+ ++ +L  +    +  ++
Sbjct: 253 NLAQQKVLELNGMISKALEADL 274


>gi|320591764|gb|EFX04203.1| 3 exoribonuclease family protein [Grosmannia clavigera kw1407]
          Length = 317

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 77/267 (28%), Gaps = 41/267 (15%)

Query: 5   GRQENQMREIS----LTRRVSKYAEGSCLVKF------GDT--HLLTTATLEEKVPMWIR 52
           GR E++ R ++    L   V+  A GS  ++       G +   L  T      +P  + 
Sbjct: 53  GRDEDEDRLLTARTDLQTGVTPSASGSAYLELSSGAVAGTSGLKLSCTVHGPRALPRSMP 112

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
            + H  ++      P +T  R            R  ++   +  +LR  +         +
Sbjct: 113 FSPHLILSTHVKYAPFATKERR---GYLRDTSER--DLAVHLETSLRGAILGERWPKSGV 167

Query: 113 IIDCDVIQADG-----------------GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ 155
            I   VI+AD                     +  +T A  AL D      D       + 
Sbjct: 168 DIVVSVIEADQDRSAPEQDPAEELWGMMNVLSGCVTVASAALADAGIDCVDTVAGGVAA- 226

Query: 156 VLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV-MTDSGHIVEVQGSAE-----RA 209
           +++   A  +        + D    E   I        + +   +  +    +       
Sbjct: 227 LVEETAAEQASPTAEHVLVADPVPAEHGRILAACCVAYLPNRDEVTNLWLKGDMPPSVDG 286

Query: 210 TFSQDHFFAMLNLAKDRIADLIKLQKD 236
                     L+ A+     ++   ++
Sbjct: 287 ALQLQMIDQALHAARQADQVIVAALQE 313


>gi|169762716|ref|XP_001727258.1| 3' exoribonuclease family protein [Aspergillus oryzae RIB40]
 gi|83770286|dbj|BAE60419.1| unnamed protein product [Aspergillus oryzae]
          Length = 324

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 81/280 (28%), Gaps = 54/280 (19%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKF--------------------GDTHLLTTATLEE 45
           RQ N++R+I L   +   A GS  +++                        L  T    +
Sbjct: 38  RQPNELRKIFLKTGLIPSASGSAYLEYEPSASLAAARSSPKSLIPPSSALKLACTVHGPK 97

Query: 46  KVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105
            +P     + +  +T      P +     KR+        R  ++   +  ALR V+   
Sbjct: 98  PLPRSATFSPNLVLTTHIKYAPFAA---RKRKGHIRDASER--DLGVHLETALRGVIVAE 152

Query: 106 ALGSRQIIIDCDVIQA-------DG-----------GTRTAAITGAWVALHDCLQHMEDC 147
                 + I   +++A       D                  IT A  A+ D      D 
Sbjct: 153 RWPKSGLDITITILEAEDDRWWGDAPDSHDAPWGMMNVLAGCITAASAAISDARIDCLDL 212

Query: 148 SNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV-MTDSGHIVEV--QG 204
                 + V        +        ++D D  E   I        M     I E+  +G
Sbjct: 213 IAGGVAAIVADESEDGEAKPK----LMLDTDPAEHKAILSACVVAYMPSRDEITEIWLKG 268

Query: 205 SAERATFSQDHF----FAMLNLAKDRIADLIKLQKDVISN 240
            + +A    D       A+L+ A D       +  + +  
Sbjct: 269 DSSKALLGPDDKRSGHEALLDGAVDAARGAHSVLAEAVRE 308


>gi|222623035|gb|EEE57167.1| hypothetical protein OsJ_07096 [Oryza sativa Japonica Group]
          Length = 417

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 87/282 (30%), Gaps = 69/282 (24%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGS-----CLVKFG--------DTHLL--TTATLEE 45
           +R+ GR+    R + +         GS      LV+ G        DT ++   TA L  
Sbjct: 25  LRVDGRRPFDFRRLKILF-------GSSWSVCVLVQGGRLGGGAARDTRVMGYATAQL-- 75

Query: 46  KVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVD 103
            V  +      G +       P +           GR G  + E+ R++ R LR    VD
Sbjct: 76  -VQPYKDRPNQGTLAIFTEFSPIADPA-----FEPGRPGESAIELGRVVDRGLRESRAVD 129

Query: 104 LSALGSR------QIIIDCDVIQADG--GTRTAAITGAWVALHDCLQH------------ 143
           + +L          + +D  ++   G      A +  +   L D                
Sbjct: 130 MESLCVVAGKHVWSVRVDLHILDNGGELNVPDAMVL-SLRNLIDAANIAALAALSTFRRP 188

Query: 144 -------------MEDCSNKFQLSQVLKGHVAAISCGMLC--GYPIVDLDYGEDSTIDVD 188
                        + D   +  L   +     A++          ++D  Y E++ +   
Sbjct: 189 ECTVGGEDGQQVTVHDPEVRDPLPLTIHHLPIAVTFAYFGEGNIMVIDPTYKEEAVMGGR 248

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
               +  +G +  +Q +      S       L +A  + AD+
Sbjct: 249 MTATINSNGDVCSIQKAGGEGVMS-SVIMQCLRIASVKAADI 289


>gi|316972750|gb|EFV56404.1| 3' exoribonuclease family, domain 1 [Trichinella spiralis]
          Length = 309

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 88/261 (33%), Gaps = 36/261 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  ++ R + +   V + A GS LV+ G+  +  +  L+   P+       G I 
Sbjct: 22  IREDGRSRDRFRPVLIRTNVIESANGSALVQIGEMSVTASVWLDFGTPLETA-PDQGMI- 79

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSRQ------I 112
            E+      +    +  +   ++      I R+  +A   +S  D   L          +
Sbjct: 80  -EFKSRFFISEESDEETSNDVKEAEN---ISRIFKQAYYSQSAFDRKQLCLVTGRLCWNL 135

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHME-------DCSNKFQLSQVLKGH----- 160
            +D  ++   G     A     +ALH+ +           D       + + KG      
Sbjct: 136 KVDLLIMGKGGNLFDVASIAVKMALHNTIIPQVEASCPKNDTRTINIENDINKGFSLNIS 195

Query: 161 --VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS----GHIVEVQGSAERATFSQD 214
                ++ G+     I+D++  E   +       ++        +  + GS +R      
Sbjct: 196 NVPMLVTIGIYGTMHIIDMNQKESECMHKIMVIGISGDELEYARVTYI-GSLKRGALMNS 254

Query: 215 HFFAMLNLAK---DRIADLIK 232
            F  ++  A      I  +I+
Sbjct: 255 SFLKVIATAVHTGAHINRIIE 275


>gi|327305819|ref|XP_003237601.1| 3' exoribonuclease [Trichophyton rubrum CBS 118892]
 gi|326460599|gb|EGD86052.1| 3' exoribonuclease [Trichophyton rubrum CBS 118892]
          Length = 335

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 82/279 (29%), Gaps = 54/279 (19%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKF-------GDT--------HLLTTATLEEKVPMW 50
           R   ++R+I L   V   A GS   +        G +         L+ +    + +   
Sbjct: 39  RDARELRKIYLKTGVIPSASGSAYFELHPSNSSPGGSLIPPSSSLKLICSVNGPKPLSRS 98

Query: 51  IRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110
              + +  ++A     P +  NR +R  V        +++   +  ALR  +        
Sbjct: 99  TPFSPNLLLSAHVKFAPFA--NRRRRAHVR---DTNERDLGVHLENALRGAIIGDRWPKS 153

Query: 111 QIIIDCDVIQ------------------ADG----GTRTAAITGAWVALHDCLQHMEDCS 148
            + I   +++                  +DG          +T A  A+ D      D  
Sbjct: 154 GLDITIMILEGEDDRWWGDMSTAETLTGSDGWGMMNVLAHCVTVASAAIADARIDCLDLV 213

Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF-VMTDSGHIVE------ 201
                + V                 ++D D  E   I        M     I E      
Sbjct: 214 AGGVAAVVDTCST-GEGATTSTKTVVLDPDPSEHLNISSSCVVGYMPSLDEITELWLKGD 272

Query: 202 VQGSAERATFSQDHFFAMLNLAKDRIAD----LIKLQKD 236
           + G++   T+   +  A+++ A          LI+  K+
Sbjct: 273 MPGASSNGTYDSPNHDALMDGAIAAAKACHSVLIEAVKE 311


>gi|322491083|emb|CBZ26348.1| putative exosome-associated protein 4 [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 221

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 69/229 (30%), Gaps = 27/229 (11%)

Query: 2   RLSGR-QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R  GR     +R I +   V      S  V+ G T +L      +++    R T  G ++
Sbjct: 3   RADGRESPGAVRAIHVATNVLANCHSSACVEIGKTRVLCGVRPPQQLVQEYRGT-RGRVS 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +       +   +     SG +      +   +       V L  +    + +  +V+ 
Sbjct: 62  CQVHR----SLESLSNLDNSGDRD-----MALALEGVAEQAVVLERIPQLLVGVLIEVVH 112

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDY 179
            DG    AA T   VAL                   +    +A S  +   G  IVD+  
Sbjct: 113 DDGAVWDAATTALCVAL-------------TAGGVEVYDTFSACSAAVRHDGAIIVDVTQ 159

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
            E       A+ V+     +  V     +          ++  A   + 
Sbjct: 160 EE--AATALASVVLCSGLSLGGVYYCCHKGACEATTMSQLVQAATKGLQ 206


>gi|327287178|ref|XP_003228306.1| PREDICTED: exosome complex exonuclease RRP42-like [Anolis
           carolinensis]
          Length = 148

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 42/127 (33%), Gaps = 12/127 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R I +   V     GS  VK G T +L     E  VP  +     G++ 
Sbjct: 22  LRVDGRGCEDYRCIEVETDVVSNTSGSARVKLGHTDILVGVKAEMGVPK-LDRPNEGFLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALG----SRQIII 114
                   +T     R            EI   + R     S VDL  L         ++
Sbjct: 81  FFVDCSANATPEFEGRGGE-----ELGTEIANTLYRIFDNESSVDLKLLCISPREHCWVL 135

Query: 115 DCDVIQA 121
             DV+ +
Sbjct: 136 YVDVLDS 142


>gi|170577726|ref|XP_001894115.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
           malayi]
 gi|158599437|gb|EDP37044.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
           malayi]
          Length = 306

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 83/284 (29%), Gaps = 54/284 (19%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR     R I +   V     GS  V+ G T LL     E      + +       
Sbjct: 21  LRADGRGPLDYRPIIVQTGVLATTNGSARVQIGSTDLLIGVKAE------LISVDTAVYR 74

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD------------LSALG 108
                    +         +GR G    E    +  AL +  D            LS + 
Sbjct: 75  NRLNFFVDCSA--NATPLFAGRGGE---EFADELSAALDAAYDNNYVLPDLKKLILSPMH 129

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDC------LQHMEDCSNKFQLSQ---VLKG 159
           + ++ +D  ++Q DG    AA  G   AL D       ++  ++      L     V K 
Sbjct: 130 AWKLFVDIVLLQCDGNVIDAAGLGVKAALKDTEISKVIVRPADEGKYTIDLPDDNTVWKL 189

Query: 160 HVAAISCGMLCGYP----IVDLDYGEDSTIDV------------DAN------FVMTDSG 197
             + +   +         IVD    E++                D N        +   G
Sbjct: 190 DTSRVPLFVSVNRLGTAKIVDNSLTEEACTRTSVWIAVAPQFVSDINHNQNNQCAVKRDG 249

Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
            I+         T   D    M+++    +  L +     + NE
Sbjct: 250 SIITFMRQCGGGTLEIDSLEEMISIGLKAVHQLHEALNQRLMNE 293


>gi|255935559|ref|XP_002558806.1| Pc13g03690 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583426|emb|CAP91438.1| Pc13g03690 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 297

 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 91/268 (33%), Gaps = 42/268 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GRQ +  R ++++    +Y  G   ++ G T+++   + E   P   R    G   
Sbjct: 23  VRLDGRQPDDYRPLNISFG-EEY--GHVNLQLGKTNIIVRISAEVTKPREDR-PFDGLFN 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQ--------RMIGRALRSVVDLSALGS--- 109
               +                 + GR+ +I+        R+I  +  + +D  +L     
Sbjct: 79  INLELTAM---------GSPAWESGRTNDIEAYATNTLDRIIRHS--NALDTESLCILKG 127

Query: 110 ---RQIIIDCDVIQADGGTRTAAITGAWVALH-----DCLQH-----MEDCSNKFQLSQV 156
                I  D  VI  DG    AA       L      D +       +     +  ++  
Sbjct: 128 VSCWSIRADVHVIDYDGNITDAACIAIMAGLQHFRRPDAVVRDGRVIVYGVEQRVPVALN 187

Query: 157 LKGHVAAISCGMLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
           +     +++        + IVD    E+   + D    +  +G +  +   A  A     
Sbjct: 188 ITHKPLSVTFHTFNDSKHVIVDATLKEEQAAEGDLVIGINSAGDVCYLSKYA-GAPADAM 246

Query: 215 HFFAMLNLAKDRIADLIKLQKDVISNEV 242
                 N+A +++ ++    + V+  ++
Sbjct: 247 VIVKKTNVAWEKVKEINAAVEKVLQADL 274


>gi|67470372|ref|XP_651154.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
 gi|56467852|gb|EAL45767.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
          Length = 223

 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 77/247 (31%), Gaps = 33/247 (13%)

Query: 1   MRLSGRQENQ---MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG 57
           M    R   +   +R IS  R VS  ++G  + K G + +++        P    N    
Sbjct: 1   MEEDKRTIIESGKIRSISYVRDVSSKSDGCYMFKQGKSCVISGVNAPRDCPKKEANPDRA 60

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +  E              E  S     R  E++  I   +   V      +  I +   
Sbjct: 61  IVKVEVY------------ERCSSFDNQRRTELEEFIKSGVEWTVLSEQYPNGLINVCNQ 108

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           +++ DG      +  A  AL      M+               V     G +     +++
Sbjct: 109 IVKDDGSIEAVTMNAAMCALLFSGVDMKGIV------------VGMCVAGKINDKGTIEI 156

Query: 178 DYGEDSTIDVD---ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
               D +I           T  G IV ++   +    S D     ++++K     ++K  
Sbjct: 157 VIDPDDSISYKWKLFTIWDTVKGEIVAMKMKGK---CSDDQLKMSMDVSKKNAVKIVKAI 213

Query: 235 KDVISNE 241
           K VI  +
Sbjct: 214 KMVIEKQ 220


>gi|295664845|ref|XP_002792974.1| exosome complex exonuclease RRP45 [Paracoccidioides brasiliensis
           Pb01]
 gi|226278495|gb|EEH34061.1| exosome complex exonuclease RRP45 [Paracoccidioides brasiliensis
           Pb01]
          Length = 295

 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 73/221 (33%), Gaps = 29/221 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR  +Q+R + ++        G   ++ G T ++   + E   P        G  T
Sbjct: 23  IRLDGRALDQLRPLMVSFG---NECGHVKLQLGKTSVVVRISAEVTKP-HPERENDGIFT 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------I 112
               +   ++         +G Q     ++ R++ R +R  + +D  +L          I
Sbjct: 79  VVVELNDMTSPA-----FKTGWQSEMETQLARILDRIIRRSNALDTESLCIAAGKNCWHI 133

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHD-----CLQH-----MEDCSNKFQLSQVLKGHVA 162
             D  VI +DGG   +       AL        +       +     +      L     
Sbjct: 134 RADVHVIDSDGGLVDSCCLAIMTALLHFRLSEAIVREGRVIVFSPEERVPSPLNLTKLPL 193

Query: 163 AISCGMLCGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVE 201
           + +  +       ++D    E++  D +    +  +G +  
Sbjct: 194 STTFNIYDEGRIIVLDAVSKEEAVSDGNLIIALNKTGELAL 234


>gi|308477282|ref|XP_003100855.1| hypothetical protein CRE_16179 [Caenorhabditis remanei]
 gi|308264429|gb|EFP08382.1| hypothetical protein CRE_16179 [Caenorhabditis remanei]
          Length = 185

 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 56/187 (29%), Gaps = 52/187 (27%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R E   R + +   V    +GS   +FG+T +L     +E +      +           
Sbjct: 31  RSETTFRPLCVKCGVFGAQDGSGYAEFGNTRVLAQMYEKEHLTSVNNLS----------- 79

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
                                          +L +V+ ++    + I I+  V+  DGG 
Sbjct: 80  -------------------------------SLSAVIFVNKYPGKVIDIEVTVLSDDGGV 108

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
            + AIT   +AL          +           HVA  S G     P       ED+  
Sbjct: 109 LSTAITAVTLALAHSGIEHMGLTA--------SAHVALKSNGDYITDPST--SEAEDAIG 158

Query: 186 DVDANFV 192
            V   FV
Sbjct: 159 GVTFAFV 165


>gi|157877516|ref|XP_001687075.1| exosome-associated protein 4 [Leishmania major strain Friedlin]
 gi|68130150|emb|CAJ09461.1| putative exosome-associated protein 4 [Leishmania major strain
           Friedlin]
          Length = 221

 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 57/182 (31%), Gaps = 25/182 (13%)

Query: 2   RLSGR-QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R  GR     +R I +   V      S  V+ G T +L      + +    R T  G ++
Sbjct: 3   RADGRESPRAVRAIHVATNVLANCHSSACVEIGKTRVLCGVRPPQHLVQEYRGT-RGRVS 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +      S+       +     G R   +   +       V L  +    + +  +V+ 
Sbjct: 62  CQVHRSLASS-------SNLDNSGDRDMALA--LEGVAEQAVVLERIPQLLVGVLIEVVH 112

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDY 179
            DG    AA T   VAL                   +    +A S  +   G  IVDL  
Sbjct: 113 DDGALWDAATTALCVAL-------------TAGGVEVYDTFSACSAALRHDGAIIVDLTR 159

Query: 180 GE 181
            E
Sbjct: 160 EE 161


>gi|219129572|ref|XP_002184959.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403454|gb|EEC43406.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 269

 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 83/267 (31%), Gaps = 39/267 (14%)

Query: 1   MRLSGRQENQMR--EISLTRRVSKYAEGSCLVKFG-DTHLLTTATLEEKVPMWIRNTKHG 57
           +R  GR  NQ+R   +SLTR     A   C  ++G  T +  T T E  +P        G
Sbjct: 1   LRTDGRVWNQLRSSRLSLTR-WENGAT--CTTQWGKGTRVSCTCTAEL-LPPNPDRPNEG 56

Query: 58  WITAEYGMLP-RSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSRQIII 114
            +     + P  ST  R      +G    RS E   + G AL   ++         ++ +
Sbjct: 57  MVALSVDLSPSASTAFRQAAPVTTGGSILRSLERVLLTGGALDTEALCVTPQYWVWKLSL 116

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN----------------KFQLSQVLK 158
              V+   G    A++  A  AL    +   + +                 K  +   L 
Sbjct: 117 AVTVLDDGGNLMDASVLAALAALRHYRKPHVELAAEGSNSGVPPRWIQSDLKEPVPLPLH 176

Query: 159 ------------GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
                          AA S        +VD D  E+       +  M   G +  +    
Sbjct: 177 HTPLSISFALLPHDTAAQSTASAKVTLLVDPDAREELVSVGTLSIAMNVHGEVCLLDFGG 236

Query: 207 ERATFSQDHFFAMLNLAKDRIADLIKL 233
                + +       LA   + DL + 
Sbjct: 237 -GCELATERLREAYRLAAQHVQDLCQA 262


>gi|60677861|gb|AAX33437.1| RE29317p [Drosophila melanogaster]
          Length = 261

 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 8/118 (6%)

Query: 31  KFGDTHLLTTATLEEKVPM-WIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQE 89
           ++G+T +L      +++     R    G +         STG+             R + 
Sbjct: 2   EYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFSTGDLDSVP-------ERERH 54

Query: 90  IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDC 147
           +  M+ +A+  VV  +   + Q+ I   ++  DG   + AI    VAL +C     D 
Sbjct: 55  LSSMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVALVECGISTYDL 112


>gi|217032225|ref|ZP_03437723.1| hypothetical protein HPB128_2g27 [Helicobacter pylori B128]
 gi|216946096|gb|EEC24707.1| hypothetical protein HPB128_2g27 [Helicobacter pylori B128]
          Length = 292

 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 79/230 (34%), Gaps = 38/230 (16%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S + + G T +L +  +E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLMYRLGKTIILASVCVERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
              L     +    +        +K  V+A     +    I++ +    +   +D     
Sbjct: 122 ---LQVSALNAASAALFLAHIAPIK-SVSACRIARVDNEFIINPNTSLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEV-----QGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           T +S +++E+     Q +A             L LA+  + +   L ++ 
Sbjct: 178 TKESLNMIEMRSLGQQLNALEEPL----MLKALELAQKSLKETCTLYEEA 223


>gi|225711778|gb|ACO11735.1| Exosome complex exonuclease RRP43 [Caligus rogercresseyi]
          Length = 279

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 85/237 (35%), Gaps = 37/237 (15%)

Query: 24  AEGSCLVKFGDTHLLTT-----ATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78
           A+GS +V+ G T ++       A+L+E+ P        G+I      LP     R+ +  
Sbjct: 49  ADGSAIVRKGHTTVICGITLQIASLDEETPT------KGYIVPHVD-LPSMCHPRIYK-- 99

Query: 79  VSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QIIIDCDVIQADGGTRTAAI 130
             G     +  + + I   +    VVD   L          + ID   +  DG  R A +
Sbjct: 100 SKGPTAEEAMILTKFIMDVILNSEVVDPKDLCIVPGEIVWVLKIDLTCLNQDGNLRDALV 159

Query: 131 TGAWVALH-------------DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVD 176
           T   +AL              D  +   +   K   S  LK    ++S  ++ G   +VD
Sbjct: 160 TALILALKSLRFPKVVSYKAEDEDKTQINVFEKEHSSLRLKNIPVSVSIAVMEGERLLVD 219

Query: 177 LDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
               E++        V+     +  +  +     F  +    +++LA+ +   + KL
Sbjct: 220 PTDEEETFATDSITVVLNAEEELCYLSKNGGEPIFD-ELMNKVIDLARAQALTVRKL 275


>gi|312377314|gb|EFR24174.1| hypothetical protein AND_11431 [Anopheles darlingi]
          Length = 269

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 79/228 (34%), Gaps = 29/228 (12%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R +     +   ++ S  +  G T ++ +A    +V +    +++  +  +Y       
Sbjct: 7   LRRMICETNILSRSDCSAALSQGATQVMVSANGPAEVKLRNAESENAHLEVQYR------ 60

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
                  + +G +  +++ ++ +I R+   VV  +A     + +    +   GG     I
Sbjct: 61  -------SNAGLEDIQNRLVESLIKRSFVRVVASTAFPRSAVYVFVQEMTDKGGLLACCI 113

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDA 189
               +AL      +                VAA+ C +   G  I+D D  +        
Sbjct: 114 NATCLALITGGIEL-------------NFTVAAVHCIIDEDGNMILDPDSKQMKLARSSF 160

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
            FV            S    +F+ D +  + ++ K+ +  +    + V
Sbjct: 161 TFVYDSIAKNTVT--SYVYGSFTFDEYERVASVCKEAVDKIFNFYRKV 206


>gi|221058609|ref|XP_002259950.1| exoribonuclease PH [Plasmodium knowlesi strain H]
 gi|193810023|emb|CAQ41217.1| exoribonuclease PH, putative [Plasmodium knowlesi strain H]
          Length = 281

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 76/229 (33%), Gaps = 38/229 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR  +  R I + + +   A+GS  V   + +++    L    P  +     G I 
Sbjct: 15  IRVDGRTLSTYRTIEINKNILVSADGSSSVMNEENNVICGIKLSLLTPS-LDAPDEGVIN 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMI-GRALRSVVDLSALGS------RQII 113
            +         NR+K++ +        Q +  +I    L++ +D   L          + 
Sbjct: 74  LQIDCPASVAANRIKKDHL--------QIMSSIIYDLCLKNNIDRKKLCILPSKFVWGVD 125

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ------------------ 155
           I   V+ A GG         +VAL D +  +     K   S                   
Sbjct: 126 ISVMVLNAGGGLLDIISMAIYVALKDTVVPVVKPKRKIDESNTFHHTKCADYQIEIVENQ 185

Query: 156 ----VLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIV 200
                 +     +S G +    + D+   E+  ++      +T SG  V
Sbjct: 186 KTDFPYENVPICVSIGEINNKYVYDMSKVEEELVENIFVVAVTSSGKCV 234


>gi|81428020|ref|YP_395019.1| nucleoside triphosphatase [Lactobacillus sakei subsp. sakei 23K]
 gi|78609661|emb|CAI54707.1| Putative nucleoside triphosphatase, Ham1 family [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 410

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 66/226 (29%), Gaps = 44/226 (19%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R  N +R + +          S L + G T +L                      
Sbjct: 3   VRTDNRAANDVRPVKVQWHYLTKQPASVLWQRGTTKVLAAV------------------- 43

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
                    T    K+  + G   G +Q     + + L + +   AL    +++   V++
Sbjct: 44  ---------TEQATKKVTLIG--SGLTQVQSDWLQQTL-TTLLAPALEKTGLLVSVTVLE 91

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
             G     A    + AL                 Q L    AA++  +     +VD    
Sbjct: 92  DGGSLLAEASNAVFGALQ------------LLPEQFLPNRAAAVTAILTGNETLVDASDT 139

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
           E++  D     V  +   I+ +      A  S      +L +A   
Sbjct: 140 EEAVADSTLLVVTDNQEQILAMTLQGATAVNS-SQLNELLLVASQG 184


>gi|325116874|emb|CBZ52427.1| putative exosome complex exonuclease [Neospora caninum Liverpool]
          Length = 294

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 82/249 (32%), Gaps = 16/249 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR    +R   +          S +V+  +  +L   +++   P    +    ++T
Sbjct: 35  VREDGRACIDVRPSQVDTFALPKCSASSIVRSSENTVLCGVSMQLARPTNAPDEGEVFVT 94

Query: 61  AEYGMLPRSTGNRV-KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR------QII 113
            +        G R    ++V   +G  S  +Q ++G  + S VD   L         ++ 
Sbjct: 95  VDCSAALGVDGARGAAFDSVGIGEGSSSTSLQALVGDMVLSSVDKKKLCLVPGKLMWKVF 154

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP 173
           +DC V++A G    A       AL          +         +     ++ G +    
Sbjct: 155 VDCMVLKAGGCLLDAVSLSVHAAL-------RTTTEVAGEPFPAEDVPIIVTVGEIANRY 207

Query: 174 IVDLDYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           + D+   E+S         V       V +Q     +         ++  ++    ++ +
Sbjct: 208 VWDMTSNEESACTGRLLVAVSPREHKCVGIQKLG-ASLVDISTLPTVMVNSQRVCREIFE 266

Query: 233 LQKDVISNE 241
                ++++
Sbjct: 267 RLDRQVASQ 275


>gi|300123363|emb|CBK24636.2| unnamed protein product [Blastocystis hominis]
          Length = 304

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 75/216 (34%), Gaps = 20/216 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  +  R I ++      A+GS LV+ G+T ++    L    P    +   G + 
Sbjct: 44  VRPDGRGIDDARGILISYGHIGTADGSSLVRIGETGVICGLKLSFD-PAKESSDTKGSLD 102

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL-RSVVDLSALG--SRQIIIDCD 117
               +      +        G Q  +S+   +++ +   R V+DL+ L       +I   
Sbjct: 103 VNIVLSSLCNAD-----FFYGEQDKQSKYYAQVLKQIFQRYVLDLNELYSAEASTVICVH 157

Query: 118 V----IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL-------SQVLKGHVAAISC 166
                I  +G    A       AL            K  +          +  +  A++ 
Sbjct: 158 ASIICIDYEGSILDACCLALLSALLTLRVPKLSLKEKELVFDYDAAYPLTILDYPVAVTF 217

Query: 167 GMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEV 202
           G+   + ++D D  E+  +D     V+  +   + +
Sbjct: 218 GLYSEFEVMDPDAFEEGLLDDTVTVVLGGNNKTISI 253


>gi|311266143|ref|XP_001927006.2| PREDICTED: exosome complex exonuclease RRP43-like [Sus scrofa]
          Length = 137

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 6/98 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P        G+I  
Sbjct: 23  RPDGRELGEFRTTTVNVGSIGTADGSSLVKLGNTTVICGIKAEFGAPP-TDAPDKGYIVP 81

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR 99
              + P  +         SG  G  +Q   + I   + 
Sbjct: 82  NVDLSPLCSW-----RFRSGPPGEEAQVASQFIADVIE 114


>gi|296413553|ref|XP_002836475.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295630299|emb|CAZ80666.1| unnamed protein product [Tuber melanosporum]
          Length = 336

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 14/128 (10%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDT---------HLLTTATLEEKVPMWIRNTKH 56
           R    +R+I L   ++  A GS  ++   T          L ++      +P     + +
Sbjct: 31  RSPTTLRKIFLKTGLTPPATGSAFLEL-PTPSTHSTPTLKLTSSVYGPRPLPSSTTFSSN 89

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
             +TAE    P ST  R +     G +   S ++   +G++    V +       I +  
Sbjct: 90  ARLTAELKFSPFSTPGRRRGYIRDGVERDLSAQLSIALGKS----VAVGKYPKSAIDVFV 145

Query: 117 DVIQADGG 124
            V+  +GG
Sbjct: 146 SVLDCEGG 153


>gi|326422440|gb|EGD71839.1| Putative exosome complex RNA-binding protein [Candidatus
          Parvarchaeum acidiphilum ARMAN-4_'5-way FS']
          Length = 102

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
          +RL  R E + R+I++   V   ++GS  V+ G T ++    +    P +      G + 
Sbjct: 17 IRLDQRSEFEGRKITIKDNVIHLSDGSAYVEIGGTKVMAGVKVLNGTP-FPDRQNEGALV 75

Query: 61 AEYGMLPRSTGNRVKR 76
            +     +T     R
Sbjct: 76 VNFEASELATNYNDDR 91


>gi|254572173|ref|XP_002493196.1| Protein involved in rRNA processing [Pichia pastoris GS115]
 gi|238032994|emb|CAY71017.1| Protein involved in rRNA processing [Pichia pastoris GS115]
 gi|328352789|emb|CCA39187.1| exosome complex component RRP45 [Pichia pastoris CBS 7435]
          Length = 298

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 89/273 (32%), Gaps = 42/273 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           +RL GR+  QMR +++        + G  LV  GD  ++   +  E V  +      G  
Sbjct: 17  LRLDGRKPMQMRPLNIEVG----PDYGQMLVTLGDAKVVVRIS-SEIVTPYEDRPFEGIF 71

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGS------RQ 111
                +      +  +    S RQ      + R+I +A+R  + +DL +L          
Sbjct: 72  QVSSELDGMGHPSFNE---ASHRQEEEVM-LSRLIEKAIRRSNALDLESLCIIAGQKCWS 127

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHV 161
           +  D  +I  DG        G    L    +           + D S +  +   +    
Sbjct: 128 VRADVHIIDYDGNMTDIVCIGVIAGLLHFKKPDISIRNGTVILHDMSEREPVPLSVLHIP 187

Query: 162 AAISCGML-----------CGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
             ++  +             G    IVD    E++         +  +  + ++  S   
Sbjct: 188 ICVTFQIYSSGSMEDNVKGDGREFVIVDATLKEEALTQGTITLTLNSNKELCQMSKSG-G 246

Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
                D   ++ N A+  + D  K  KD I  +
Sbjct: 247 INLEVDEILSLTNEAQIIVDDFTKYIKDTIKKD 279


>gi|121698408|ref|XP_001267812.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
           putative [Aspergillus clavatus NRRL 1]
 gi|119395954|gb|EAW06386.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
           putative [Aspergillus clavatus NRRL 1]
          Length = 292

 Score = 63.6 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 93/267 (34%), Gaps = 40/267 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GRQ +Q+R + +T    +Y  G   V+ G T L+   + E   P        G   
Sbjct: 23  VRLDGRQADQLRPLKVTFG-EEY--GHVKVQLGKTSLIVRISSEVTKPR-DDRPFDGLFA 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGS------RQI 112
               +    +         +GRQG     +  ++ R +R  + +D  +L          I
Sbjct: 79  IALELTAMGSPA-----WDNGRQGDLEAYVAHVLDRVVRHSNALDTESLCILKGVSCWSI 133

Query: 113 IIDCDVIQADGGTRTAAITGAWVALH-----DCLQH-----MEDCSNKFQLSQVLKGHVA 162
             D  +   DG    AA  G    L      D +       +     +  +   +     
Sbjct: 134 RADIHITDYDGNLIDAACIGVMAGLQHFRRPDAVVKDGQVIVYGLDERVPVPLNITHKPL 193

Query: 163 AISCGMLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +++          I+D    E+   + D    + ++G +  V      + FS     A++
Sbjct: 194 SVTFHTFDEGKRVILDATRKEEQASEADVVIGVNNAGDVCFV------SKFSGSPVDALV 247

Query: 221 -----NLAKDRIADLIKLQKDVISNEV 242
                ++A +++ ++  +    +  ++
Sbjct: 248 FVTKSSVALEKVKEINGIIDKALQTDL 274


>gi|71031797|ref|XP_765540.1| exosome complex exonuclease Rrp45 [Theileria parva strain Muguga]
 gi|68352497|gb|EAN33257.1| exosome complex exonuclease rrp45, putative [Theileria parva]
          Length = 276

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 86/251 (34%), Gaps = 41/251 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR  +    +S+         G+ L+ FG+T + T  + E   P   R    G++ 
Sbjct: 32  LRIDGRSLDSHVYVSID---FDGPPGTSLISFGNTVVFTCISQEIVEPNSER-PNEGFLF 87

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALG---SRQII-- 113
                 P ++ +        G+   +   +   +    +  S +DL  L     +Q+   
Sbjct: 88  FNVETSPFTSESY-----EPGKTTDQEHNLIYFLENMFKESSCLDLETLCITSGKQVWAL 142

Query: 114 -IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF---------QLSQVLKGHVAA 163
            +   V+Q DG   +A    A  +L    + + + S++          + + +   HV  
Sbjct: 143 RVYVHVLQDDGNLLSACSLSALASLLHYRKPLMELSDELNHSFYGLWHKGTPLNIYHVPM 202

Query: 164 ISCGMLCGYP--------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERA 209
                L   P              +++ +  E+  +    + +    G ++ +  +    
Sbjct: 203 FVTVWLLEAPDHSLLDHNLSEYKFVLEPNSFEEKLLKTQVSILFNQFGEVLWIYKNG-ST 261

Query: 210 TFSQDHFFAML 220
               + F + +
Sbjct: 262 PVPLETFESAI 272


>gi|169783852|ref|XP_001826388.1| exosome complex endonuclease 2/ribosomal RNA processing protein
           [Aspergillus oryzae RIB40]
 gi|238493679|ref|XP_002378076.1| exosome complex endonuclease 2, putative [Aspergillus flavus
           NRRL3357]
 gi|83775132|dbj|BAE65255.1| unnamed protein product [Aspergillus oryzae]
 gi|220696570|gb|EED52912.1| exosome complex endonuclease 2, putative [Aspergillus flavus
           NRRL3357]
          Length = 292

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 90/262 (34%), Gaps = 30/262 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GRQ +Q R ++++    +Y  G   V+ G T L+   + E   P        G  T
Sbjct: 23  VRLDGRQADQFRPLNVSFG-EEY--GHVKVQLGKTSLIVRISSEVTKP-HDDRPFDGIFT 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGS------RQI 112
               +    +         +GRQG     +  ++ R +R  + +D  +L          +
Sbjct: 79  IALELTAMGSPA-----WENGRQGDLETYVSNVLDRVIRHSNALDTESLCVLKGVSCWNV 133

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQH--MEDCSNKFQLSQVLKGHVA------AI 164
             D  +   DG    AA  G    L    +   +             +  VA       +
Sbjct: 134 RADVHITNYDGNLIDAACIGVMAGLQHFRRPDAVVKDGQVIVYGVDERVPVALNITHKPL 193

Query: 165 SCGML----CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           S            IVD    E+   + D    + ++G +  +   +  +  S   F    
Sbjct: 194 SVTFHTFDEGKRVIVDATRKEEQASEADVVMGLNNAGDVCYLSKFS-GSPVSAMVFVNKS 252

Query: 221 NLAKDRIADLIKLQKDVISNEV 242
           ++A +++ ++  +    +  ++
Sbjct: 253 SVALEKVKEINGIIDKALQADL 274


>gi|297704868|ref|XP_002829311.1| PREDICTED: exosome complex exonuclease RRP46-like [Pongo abelii]
          Length = 232

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 50/165 (30%), Gaps = 27/165 (16%)

Query: 30  VKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQE 89
           V  GDT +L       +V                 +  ++T   + R  + G  G   + 
Sbjct: 44  VSSGDTSVLAGVYGPAEVK------------VSKEIFNKATLEVILRPKI-GLPGVAEKS 90

Query: 90  IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN 149
            +R+I     +VV  +      I +   V+   G      +  A +AL D    M     
Sbjct: 91  RERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRAL-- 148

Query: 150 KFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDANFVM 193
                         ++C +   G  ++D    ++        F +
Sbjct: 149 -----------FCGVTCALDSDGTLMLDPTSKQEKEARAVLTFAL 182


>gi|289742861|gb|ADD20178.1| exosomal 3'-5' exoribonuclease complex subunit Rrp46 [Glossina
           morsitans morsitans]
          Length = 245

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 52/169 (30%), Gaps = 27/169 (15%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +R ++         +GS L   G T +L +     +V +         +   Y       
Sbjct: 20  LRTLNCELNPLTRTDGSTLFIQGATCVLASMLGPVEVKLQNLKIDKAHVDCIY------- 72

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
             R K    + R   R      MI     + +  +      I I    +   GG    AI
Sbjct: 73  --RPKAGLPTIRDKIRET----MIKDTCEAALLSALHPRTLISIQLQELDDRGGLDACAI 126

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLD 178
             A +AL                   +K  VAA+ C +   G  ++D D
Sbjct: 127 NAACMAL-------------LIGGVPMKFTVAAVHCVVDKNGEIVLDPD 162


>gi|322699612|gb|EFY91372.1| 3' exoribonuclease [Metarhizium acridum CQMa 102]
          Length = 288

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 67/229 (29%), Gaps = 39/229 (17%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFG--DTHLLTTATLEEKVPMWIRNTKHGW 58
           +RL  R+  Q R + LT       +     +FG  D  ++   + E  VP +      G 
Sbjct: 23  LRLDNRKFEQFRPLELTFG-----D-----EFGVADVKIVAKVSAEVTVP-FTDRPFDGI 71

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSR------ 110
            +    + P    +         R   +   + R++ + +R    +D  +L         
Sbjct: 72  FSISSELSPMVAPS-----FEVNRPTEQEVLLSRILEKTIRRSGALDTESLCLVAGQKCW 126

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHD------------CLQHMEDCSNKFQLSQVLK 158
            +  D  V+  DG     A      AL                 +         LS +  
Sbjct: 127 SVRADVHVLSHDGNLLDVACFAVVAALRHFRKPETTMEGETLTIYTPAEREPVALSWLHS 186

Query: 159 GHVAAISCGMLCGYPIV-DLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
                 S     G  ++ D  + E+        F +   G I +V    
Sbjct: 187 PFCVTFSFFGHEGETVLMDTTWLEEQLRVSSCTFSLNKHGEICQVSKLG 235


>gi|326471461|gb|EGD95470.1| 3' exoribonuclease [Trichophyton tonsurans CBS 112818]
 gi|326481764|gb|EGE05774.1| 3' exoribonuclease [Trichophyton equinum CBS 127.97]
          Length = 334

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 86/287 (29%), Gaps = 70/287 (24%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVK-------FGDT--------HLLTTATLEEKVPMW 50
           R   ++R+I L   V   A GS   +        G +         L+ +    + +   
Sbjct: 39  RDARELRKIYLKTGVIPSASGSAYFELHPSNSSHGGSLIPPSSSLKLICSVNGPKPLSRS 98

Query: 51  IRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110
              + +  ++A     P +     +R A       R  ++   +  ALR  +        
Sbjct: 99  TPFSPNLLLSAHVKFAPFAG---RRRRAHVRDMNER--DLGVHLENALRGAIIGDRWPKS 153

Query: 111 QIIIDCDVIQ------------------ADG----GTRTAAITGAWVALHDCLQHMEDCS 148
            + I   +++                  +DG          +T A  A+ D         
Sbjct: 154 GLDITIMILEGEDDRWWGDMSTAETLTGSDGWGMMNVLAHCVTVASAAIADA-------- 205

Query: 149 NKFQLSQVLKGHVAAISCGMLCGY--------PIVDLDYGEDSTIDVDANF-VMTDSGHI 199
            +     ++ G VAA+      G          ++D D  E   I        M     I
Sbjct: 206 -RIDCLDLVAGGVAAVVDTCSSGEGATSSTKMVVLDPDPSEHLNISSSCVVGYMPSLDEI 264

Query: 200 VE------VQGSAERATFSQDHFFAMLNLAKDRIAD----LIKLQKD 236
            E      + G++   T+   +  A+++ A          LI+  K+
Sbjct: 265 TELWLKGDMPGASSDGTYDSPNHDALMDGAIAAAKASHSVLIEAVKE 311


>gi|167396187|ref|XP_001741945.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165893254|gb|EDR21576.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 223

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 80/248 (32%), Gaps = 35/248 (14%)

Query: 1   MRLSGRQENQ---MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG 57
           M    R   +   +R IS  R VS  ++G  + K G + +++        P    N    
Sbjct: 1   MEEDKRTIIESGKIRSISYVRDVSSKSDGCYMFKQGKSCIISGVNAPRDCPKREANPDRA 60

Query: 58  WITAE-YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
            +  E Y     S+ +  +R            E++  I   +   V      +  I +  
Sbjct: 61  VVKVEVYER--CSSFDSQRR-----------TELEEFIKSGVEWTVISEQYPNGLINVCN 107

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVD 176
            +++ DG      +  A  AL      M+               V     G +     ++
Sbjct: 108 QIVKDDGSIEAVTMNAAMCALLFSGVDMKGIV------------VGMCVAGKIDNNGTIE 155

Query: 177 LDYGEDSTIDVD---ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL 233
           +    D +I           T  G IV ++   +    S D     ++++K     ++K 
Sbjct: 156 IVIDPDDSISYKWKLFTIWDTIKGEIVAMKMKGK---CSDDQLKMSMDISKKNAVKMVKA 212

Query: 234 QKDVISNE 241
            K VI  +
Sbjct: 213 IKMVIEKQ 220


>gi|148703325|gb|EDL35272.1| exosome component 8, isoform CRA_a [Mus musculus]
          Length = 119

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 10/97 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R  ++       A+GS LVK G+T ++     E   P  +     G++  
Sbjct: 23  RPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-VDAPDRGYVVF 81

Query: 62  ----EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMI 94
                  + P  +         +G  G  +Q   + I
Sbjct: 82  LSVPNVDLPPLCSS-----RFRTGPPGEEAQVTSQFI 113


>gi|303313275|ref|XP_003066649.1| hypothetical protein CPC735_058740 [Coccidioides posadasii C735
           delta SOWgp]
 gi|240106311|gb|EER24504.1| hypothetical protein CPC735_058740 [Coccidioides posadasii C735
           delta SOWgp]
          Length = 790

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 71/240 (29%), Gaps = 49/240 (20%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKF---------GDT--------HLLTTATLEEKVP 48
           R+  ++R+I L   V   A GS  ++            T         L+ T      +P
Sbjct: 39  RKAAELRKIFLKSGVIPSASGSAYLELQPSNDPAYKSKTLIPPSSSLKLVCTVHGPRPLP 98

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
                + +  ++      P +   R +R  +         ++   +  AL  ++      
Sbjct: 99  RSAPFSPNLILSTHVKFAPFA--GRRRRGYIRDMYER---DLAVHLETALGGMIIGDRWP 153

Query: 109 SRQIIIDCDVIQA------------------DG----GTRTAAITGAWVALHDC-LQHME 145
              + +  ++++                   DG        + IT A  A+ D  +  ++
Sbjct: 154 KSGLDVTVNILEGEDDRWWGDSLSPGPLGGVDGWGLMNVLASCITVASAAIVDARIDCLD 213

Query: 146 DCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDVDANFV--MTDSGHIVEV 202
             +         K  ++  +     G   ++D D  E          V  M     I EV
Sbjct: 214 LLAGGVAAIVEEKDRMSQDTNSKEQGRSLVLDPDPSE-HRDIASLCIVGYMPSRDEITEV 272


>gi|156542409|ref|XP_001601196.1| PREDICTED: similar to ENSANGP00000023686 [Nasonia vitripennis]
          Length = 291

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 78/246 (31%), Gaps = 31/246 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R  GR     R + L  ++     GS  ++ G+T +L    +E   P +  +   G I 
Sbjct: 22  FRNDGRSRTDYRCMELETKLMDQVHGSARLRIGNTDILVGVKVEIDTP-YPDSPNEGKIE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGR-SQEIQRMIGRALRS-----VVDLSALGSR---Q 111
                   +T +        G+ G   + EI  ++  A +S     +  LS L  +   +
Sbjct: 81  FFVDCSANATPSF------EGKGGEDLANEISNVLALAYQSPHAMNLSQLSILPHKKCWK 134

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMED--CSNKFQLSQVLKGHV-------- 161
           + +D  +++  G    A       AL+            +  +   VL   +        
Sbjct: 135 LYVDILILECGGNLFDAVAVAVKAALYSTEIPKVKGAMLDGGEADIVLSDDIYESEKLDT 194

Query: 162 ----AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
                 ++   +    +VD    E+     +    +  +G I  +       +       
Sbjct: 195 TNCPVLVTLCKIGDNCVVDPSSEEEMCSSANIVVSVMPNGRISSIVKMG-YGSLQPATLS 253

Query: 218 AMLNLA 223
            +L + 
Sbjct: 254 KILKMG 259


>gi|299750699|ref|XP_001829767.2| exosome component Rrp46 [Coprinopsis cinerea okayama7#130]
 gi|298409029|gb|EAU91989.2| exosome component Rrp46 [Coprinopsis cinerea okayama7#130]
          Length = 238

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 81/255 (31%), Gaps = 54/255 (21%)

Query: 7   QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
              Q R + +        +GS    FG++  L + +   +V   +   +    T E  + 
Sbjct: 10  SNEQFRPLHIVYDGLNRVDGSARFGFGNSAALASVSGPIEV--RLAAEQSSQATFEVHVR 67

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA----- 121
           P S                +SQ    +I  AL   + L+      + +    + +     
Sbjct: 68  PFS---------NVPATDSKSQ--ATVIRSALTPSLILTKNPRTLVQLVVQNLSSASTNT 116

Query: 122 --DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-CGYPIVDLD 178
             DG T  A I  + +AL +              S  ++G V A++ G    G  +VD  
Sbjct: 117 ERDGLT-AAMINASTLALLNAG------------SLPMRGVVCAVAVGRTSNGEFLVDPT 163

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERAT------------FSQDHFFAMLNLAKDR 226
             E           +T+ G    +   +  +T              Q+H  +   +A+  
Sbjct: 164 AEEAKD--------ITEGGCFSFMFAGSSASTCVWTNWRSTSGGVKQEHLESGKAMARTA 215

Query: 227 IADLIKLQKDVISNE 241
              + K  K  +  E
Sbjct: 216 AQRIYKAIKTSLGGE 230


>gi|254566183|ref|XP_002490202.1| exosome component [Pichia pastoris GS115]
 gi|238029998|emb|CAY67921.1| exosome component [Pichia pastoris GS115]
 gi|328350600|emb|CCA37000.1| hypothetical protein PP7435_Chr1-0864 [Pichia pastoris CBS 7435]
          Length = 260

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 65/188 (34%), Gaps = 22/188 (11%)

Query: 13  EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           +I +   +    EGSC ++  +T +  +       P+         ++ E   LP  T +
Sbjct: 51  KIFVDMGLVTNCEGSCYMEIDNTLIQVSVYGPR--PIRGSFIDTATLSVECRFLPFLTES 108

Query: 73  RVKREAVSGRQGGRSQEI-QRM---IGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTA 128
              +E  +G       EI QR+   +     + + LS      I I   VI  D  +   
Sbjct: 109 ---KEFANGNGRNSLTEIEQRLSSFVYSCFVNTIILSKYPKSSIDIFIKVISVD--SYDT 163

Query: 129 A--------ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
                    +  A +++ D      +  +      +    V + +   L    IV L   
Sbjct: 164 NFIKLTNYLVNCASLSIVDAQI---EVKDIITAGYIPTSIVTSFTNLHLPNDKIVGLYIS 220

Query: 181 EDSTIDVD 188
           +D+  ++D
Sbjct: 221 DDTDAEID 228


>gi|261190048|ref|XP_002621434.1| exosome complex endonuclease 2/ribosomal RNA processing protein
           [Ajellomyces dermatitidis SLH14081]
 gi|239591262|gb|EEQ73843.1| exosome complex endonuclease 2/ribosomal RNA processing protein
           [Ajellomyces dermatitidis SLH14081]
 gi|239606325|gb|EEQ83312.1| exosome complex endonuclease 2/ribosomal RNA processing protein
           [Ajellomyces dermatitidis ER-3]
 gi|327353102|gb|EGE81959.1| exosome complex exonuclease RRP45 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 293

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 80/232 (34%), Gaps = 38/232 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           +RL GR  +Q+R ++++       +  G   ++ G T ++   + E   P   R    G 
Sbjct: 23  VRLDGRALDQLRPLTVSFG-----DEYGHVKLQLGKTSVVVRISAEVTKPRPEREND-GI 76

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ----- 111
            T    +   ++         +GRQ     ++ R + R +R  + +D  +L         
Sbjct: 77  FTVSVELNDMASPAY-----ETGRQSELETQLVRTLDRIIRRSNALDTESLCIAAGKNCW 131

Query: 112 -IIIDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            +  D  V+ +DGG   +        L    L        +  + +  +   + ++   L
Sbjct: 132 HVRADVHVVDSDGGLVDSCCLAIMTGLLHFRLPEAVVRDGRVTVYRPEERVPSPLNLTKL 191

Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
                            +   F M D G I+ +  +++    S+      L+
Sbjct: 192 P----------------LSTTFNMYDEGRIIVLDATSKEEAVSEGSLIIALD 227


>gi|156363855|ref|XP_001626255.1| predicted protein [Nematostella vectensis]
 gi|156213125|gb|EDO34155.1| predicted protein [Nematostella vectensis]
          Length = 225

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 58/183 (31%), Gaps = 22/183 (12%)

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG-----RALRSVVDLSALG 108
              G+I     + P  + +        G     +Q +   I      R++  ++  +   
Sbjct: 27  PNKGFIVPNVDLPPLCSPSFR-----PGPPSEHAQVLSTFIDNLITKRSME-LLQHAKYL 80

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV---------LKG 159
              + ID   +  DG    AA+     AL +   H    + + +  +          LK 
Sbjct: 81  VWVLYIDLMCLDYDGNVADAAVIAMLAALQNTRLHTVTINEETETPEPSENKDIHLKLKS 140

Query: 160 HVAAISCGMLCGYPI-VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
              A++ G+     I  D    E+       + VMT +  +V V         +QD    
Sbjct: 141 MPVAVTFGIFDDDHIYCDPTDEEERLASGKVSVVMTTNNKVVAVHKPG-GPPLTQDKLQE 199

Query: 219 MLN 221
             +
Sbjct: 200 CFD 202


>gi|240282302|gb|EER45805.1| exosome complex exonuclease RRP45 [Ajellomyces capsulatus H143]
          Length = 293

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 79/232 (34%), Gaps = 38/232 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           +RL GR  +Q+R ++++       +  G   ++ G T ++   + E   P   R    G 
Sbjct: 23  VRLDGRALDQLRPLTVSFG-----DEYGHVKLQLGKTSVVVRISAEVTKPRSEREND-GI 76

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ----- 111
            T    +   ++         +GRQ     ++ R + R +R    +D  +L         
Sbjct: 77  FTVSMELNDMASPAY-----ETGRQSELESQLVRTLDRIIRRSNALDTESLCIAAGKNCW 131

Query: 112 -IIIDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            +  D  V+ +DGG   +        L    L        +  + +  +   + ++   L
Sbjct: 132 HVRADVHVVDSDGGLVDSCCLAIMTGLLHFRLPEAVVREGRVTVYRPEERVPSPLNLTKL 191

Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
                            +   F M D G I+ +  +++    S+      L+
Sbjct: 192 P----------------LSTTFNMYDEGRIIVLDATSKEEAVSEGSLIIALD 227


>gi|146104665|ref|XP_001469886.1| exosome-associated protein 4 [Leishmania infantum]
 gi|134074256|emb|CAM73000.1| putative exosome-associated protein 4 [Leishmania infantum JPCM5]
 gi|322503863|emb|CBZ38949.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 221

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 59/193 (30%), Gaps = 27/193 (13%)

Query: 2   RLSGR-QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R  GR     +R I +   V      S  V+ G T +L      + +    R T  G ++
Sbjct: 3   RADGRESPRAVRAIHVATNVLANCHSSACVEIGKTRVLCGVRPPQHLVQEYRGT-RGRVS 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +      S+       +     G R   +   +       V L  +    +    +V+ 
Sbjct: 62  CQVHRSLASS-------SNLDNSGDRDMALA--LEGVAEQAVVLERIPQLLVGALIEVVH 112

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDY 179
            DG    AA T   VAL                   +    +A S  +   G  IVDL  
Sbjct: 113 DDGAVWDAATTALCVAL-------------TAGGVEVYDTFSACSAALRRDGAIIVDLTR 159

Query: 180 GEDSTIDVDANFV 192
            E       A+ V
Sbjct: 160 EE--AATAMASVV 170


>gi|170086802|ref|XP_001874624.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164649824|gb|EDR14065.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 345

 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 64/192 (33%), Gaps = 15/192 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKF--------GDTHLLTTATLEEKVPMWIR 52
           +R  GR  +  R ++L   ++  A GS  +          G T +L  A +E +  +   
Sbjct: 24  LRTDGRSLHDFRSVALETGIAPLANGSARISIGQDPHDGSGGTEVLAAAKVEVE-SVEEG 82

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ- 111
               G +       P +            +    +   Q +   +L    +L  L  ++ 
Sbjct: 83  GVDAGRVVCTVSCSPAAYPQLATAALEDLQYDMTTIVHQTLSHPSLHPK-NLRILPGKKS 141

Query: 112 --IIIDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQVLKGHVAAISCGM 168
             + +D  V+   G    A    A  AL D  +        K +        ++A + G 
Sbjct: 142 WLLNLDLIVLADSGNIYDALFMAARAALWDTKIPRTRAVEYKARKGVPGSAGLSA-AVGK 200

Query: 169 LCGYPIVDLDYG 180
           + G   +D+D  
Sbjct: 201 VGGSGDMDIDEE 212


>gi|167536393|ref|XP_001749868.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771583|gb|EDQ85247.1| predicted protein [Monosiga brevicollis MX1]
          Length = 629

 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 85/256 (33%), Gaps = 39/256 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-LEEKVPMWIRNTKHGW-- 58
           R+ GR  ++++ +     +     G+ L + G+T +  TAT  +      +   +     
Sbjct: 355 RIDGRDFDEVQAVQAAINLYPELHGNSLFQRGETQVFCTATLGDRDAVKRLDEIEVAVAG 414

Query: 59  ------ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
                    +Y     +      R     R+ G       +  RAL  ++D        +
Sbjct: 415 LSPQKSFFFDYEFPAYAINKIRVRRGQMRRETGHGS----LAERALGRMIDPG--YENTV 468

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML--- 169
            +   V  + G +  A++ G  +A+ D                 L+  VA +SCG++   
Sbjct: 469 RVTSQVTSSFGSSSMASVCGGSLAMMDAGV-------------PLRAPVAGLSCGLVGYT 515

Query: 170 --CG-----YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
              G       + DL   ED    +D     T SG +  +Q   E    S D     +  
Sbjct: 516 DEEGQLTKYQLLTDLKGFEDIYGAMDLKMASTQSG-VNAIQFDTELRGISLDVLEEAMQR 574

Query: 223 AKDRIADLIKLQKDVI 238
             D    ++K     +
Sbjct: 575 TFDGKQVVLKEMNAAM 590



 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 69/230 (30%), Gaps = 26/230 (11%)

Query: 13  EISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVP-----MWIRNTKHGWITAEYGML 66
             + T     Y A+G+  +          A      P       ++   +        ++
Sbjct: 50  PATFTCGALAYQADGAVTLDQ--------ACPLHSTPSPFLTPLLQQVDYRERGTAVNLI 101

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           P+S   R       G +  R   + R++ R+LR +V      S Q+ +     QA     
Sbjct: 102 PKSFHRR------EGGERDRETLVARLVDRSLRPLVPSDVAASTQMTVKLLASQARMEPT 155

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
             +I  A  AL              ++       VA+          +++ D+ E +   
Sbjct: 156 VQSIEAASAALMVSDISWHGPVAAVRVGVRKALEVASDDEPY---ELLINPDHKETAECV 212

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
               +    +G    V    E A          L  A   I   ++ Q++
Sbjct: 213 GVLLYSGVQAG---AVMIDFEGAELPLPALKRALRAAHQHIQPSLEAQRE 259


>gi|323355606|gb|EGA87426.1| Rrp45p [Saccharomyces cerevisiae VL3]
          Length = 212

 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 55/165 (33%), Gaps = 18/165 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR  +Q R++ +T        G   VK G+T +    + +   P   R    G    
Sbjct: 24  RLDGRSFDQFRDVEITFG---KEFGDVSVKMGNTKVHCRISCQIAQPYEDR-PFEGLFVI 79

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEI-QRMIGRALR--SVVDLSALGSR------QI 112
              + P +          +G   G  + +  R+I +++R    +D+  L          +
Sbjct: 80  STEISPMAGSQ-----FENGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAV 134

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL 157
             D   +  DGG   A+       L    +       +  +   +
Sbjct: 135 RADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQIIVHPV 179


>gi|289676029|ref|ZP_06496919.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. syringae FF5]
          Length = 224

 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 29/230 (12%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
           ++L    +++ A G+ LV   D   +L T    ++       +  +  +   T   G +P
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR   +     R+I R +R +     +   Q++              
Sbjct: 75  ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTID 186
           AA+ G   AL                     G V A           +++  Y +     
Sbjct: 129 AAMIGTSAALAISGI-------------PFDGPVGAARVAFHESTGYLLNPTYEQLQASS 175

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           +D     T    ++     +E    ++D     +  A D    +I   K+
Sbjct: 176 LDMVVAGTSEAVLMV---ESEAKELTEDQMLGAVLFAHDEFQVVINAIKE 222


>gi|207346511|gb|EDZ72988.1| YDR280Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 212

 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 55/165 (33%), Gaps = 18/165 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR  +Q R++ +T        G   VK G+T +    + +   P   R    G    
Sbjct: 24  RLDGRSFDQFRDVEITFG---KEFGDVSVKMGNTKVHCRISCQIAQPYEDR-PFEGLFVI 79

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEI-QRMIGRALR--SVVDLSALGSR------QI 112
              + P +          +G   G  + +  R+I +++R    +D+  L          +
Sbjct: 80  STEISPMAGSQ-----FENGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAV 134

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL 157
             D   +  DGG   A+       L    +       +  +   +
Sbjct: 135 RADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQIIVHPV 179


>gi|62734004|gb|AAX96113.1| expressed protein [Oryza sativa Japonica Group]
          Length = 165

 Score = 62.0 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R+  + R  ++       A GS LV+ GDT +L +  LE   P        G I 
Sbjct: 39  VRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASIKLEVMSPSGEA-PDEGSIA 97

Query: 61  AEYGMLPRSTG-NRVKREAV 79
            E+ M P  +   R  R A 
Sbjct: 98  VEFHMPPICSPLVRPGRPAE 117


>gi|325088441|gb|EGC41751.1| exosome complex exonuclease RRP45 [Ajellomyces capsulatus H88]
          Length = 293

 Score = 62.0 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 80/232 (34%), Gaps = 38/232 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           +RL GR  +Q+R +++      +++  G   ++ G T ++   + E   P   R    G 
Sbjct: 23  VRLDGRALDQLRPLTV-----SFSDEYGHVKLQLGKTSVVVRISAEVTKPRSEREND-GI 76

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ----- 111
            T    +   ++         +GRQ     ++ R + R +R    +D  +L         
Sbjct: 77  FTVSVELNDMASPAY-----ETGRQSELESQLVRTLDRIIRRSNALDTESLCIAAGKNCW 131

Query: 112 -IIIDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            +  D  V+ +DGG   +        L    L        +  + +  +   + ++   L
Sbjct: 132 HVRADVHVVDSDGGLVDSCCLAIMTGLLHFRLPEAVVREGRVTVYRPEERVPSPLNLTKL 191

Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
                            +   F M D G I+ +  +++    S+      L+
Sbjct: 192 P----------------LSTTFNMYDEGRIIVLDATSKEEAVSEGSLIIALD 227


>gi|323338208|gb|EGA79441.1| Rrp45p [Saccharomyces cerevisiae Vin13]
          Length = 305

 Score = 62.0 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 55/165 (33%), Gaps = 18/165 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR  +Q R++ +T        G   VK G+T +    + +   P   R    G    
Sbjct: 24  RLDGRSFDQFRDVEITFGKXF---GDVSVKMGNTKVHCRISCQIAQPYEDR-PFEGLFVI 79

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEI-QRMIGRALR--SVVDLSALGSR------QI 112
              + P +          +G   G  + +  R+I +++R    +D+  L          +
Sbjct: 80  STEISPMAGSQ-----FENGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAV 134

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL 157
             D   +  DGG   A+       L    +       +  +   +
Sbjct: 135 RADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQIIVHPV 179


>gi|11514023|pdb|1E3H|A Chain A, Semet Derivative Of Streptomyces Antibioticus PnpaseGPSI
           Enzyme
          Length = 757

 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 82/249 (32%), Gaps = 30/249 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL----EEKVPMWIRNTKHG 57
           R+ GR    +R ++          GS L + G+T +L   TL     E+    +      
Sbjct: 356 RIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNXLRXEQQLDTLSPVTRK 415

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                Y   P S G   +  +   R+ G       +  RA+  V+         I    +
Sbjct: 416 RYXHNYNFPPYSVGETGRVGSPKRREIGHG----ALAERAIVPVLPTREEFPYAIRQVSE 471

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----- 172
            + ++G T   ++  +  +L +                 LK  VA I+ G++        
Sbjct: 472 ALGSNGSTSXGSVCASTXSLLNAGV-------------PLKAPVAGIAXGLISQEINGET 518

Query: 173 ---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               + D+   ED+  D D     T    +  +Q   +          A L  A+D    
Sbjct: 519 HYVALTDILGAEDAFGDXDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLH 577

Query: 230 LIKLQKDVI 238
           ++ +  + I
Sbjct: 578 ILDVXXEAI 586



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 73/240 (30%), Gaps = 41/240 (17%)

Query: 12  REISLTRR-VSKYAEGSCLVKFGD-THLLTTAT----LEEKVPMWIRNTKHGWITAEYGM 65
           R I      +++ A GS +    D T +L+  T     ++++  +             G 
Sbjct: 37  RTIRFETGRLARQAAGSAVAYLDDDTXVLSATTASKNPKDQLDFFPLTVDVEERXYAAGK 96

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
           +P   G+  +RE   GR    +    R+I R LR           Q++     +  D   
Sbjct: 97  IP---GSFFRRE---GRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIXALNPDHLY 150

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
              AI  A  +                      G +  +   ++ G  +    + E    
Sbjct: 151 DVVAINAASASTQLAGL-------------PFSGPIGGVRVALIRGQWVAFPTHTELEDA 197

Query: 186 DVDANFVMT--DSGHI-------------VEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
             D        + G +             +++      A  +++   A L+ AK  I  L
Sbjct: 198 VFDXVVAGRVLEDGDVAIXXVEAEATEKTIQLVKDGAEAP-TEEVVAAGLDAAKPFIKVL 256


>gi|213409001|ref|XP_002175271.1| exosome complex exonuclease RRP46 [Schizosaccharomyces japonicus
           yFS275]
 gi|212003318|gb|EEB08978.1| exosome complex exonuclease RRP46 [Schizosaccharomyces japonicus
           yFS275]
          Length = 214

 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 74/236 (31%), Gaps = 41/236 (17%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
              +   ++GS   K  DT +L +     +V            T E  + P S  +  K 
Sbjct: 3   KIGILSQSDGSSDWKQRDTRVLCSVNGPIEVKPRSEIPNRA--TFELLVSPISGVSGTKE 60

Query: 77  EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD-GGTRTAAITGAWV 135
             ++ R           I   L   V  +      I ++  +++ D      AAI    +
Sbjct: 61  RFLASR-----------ILSVLEDAVLSTNYPRTLIQVNVQIVEGDENDLLAAAINATVL 109

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-------LCGYPIVDLDYG----EDST 184
           A  D    M             K    AISC              +VD        E   
Sbjct: 110 AFLDAGIAM-------------KYMPCAISCAWKNPKETQANENAMVDYPAEKSTIEQPV 156

Query: 185 IDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                  V  D   ++ ++ S       ++  F++L  A+ R+ ++ +  + V+ +
Sbjct: 157 HITMCYTVSADPKSLLFLESSGM---IPEEDLFSVLASAESRVDEVAQKLRQVVLD 209


>gi|68483592|ref|XP_714249.1| potential exosome component Rrp45p [Candida albicans SC5314]
 gi|68483865|ref|XP_714111.1| potential exosome component Rrp45p [Candida albicans SC5314]
 gi|46435645|gb|EAK95022.1| potential exosome component Rrp45p [Candida albicans SC5314]
 gi|46435802|gb|EAK95176.1| potential exosome component Rrp45p [Candida albicans SC5314]
 gi|238883782|gb|EEQ47420.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 337

 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 52/143 (36%), Gaps = 12/143 (8%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM 65
           R+ NQ R I +    ++Y  GS  +  G T ++   T     P   R    G +T    +
Sbjct: 33  RKFNQFRPIDIKLSNTRY--GSVELSLGKTKVMVNITSRITEPYQDR-PFEGIMTINCEI 89

Query: 66  LPRSTGNRVKREAVSGRQGGRSQ-EIQRMIGRALR--SVVDLSAL----GSR--QIIIDC 116
                         +          I R + RA+R  + VDL  L    G +  ++IID 
Sbjct: 90  PNHIKLQSNDTTNNNNDNEDEFINLINRALDRAIRRSNAVDLENLCIIAGEKVWELIIDL 149

Query: 117 DVIQADGGTRTAAITGAWVALHD 139
            V+  DG    +       AL D
Sbjct: 150 QVLNYDGNLIDSGCLAIITALLD 172


>gi|325116021|emb|CBZ51575.1| GF22565, related [Neospora caninum Liverpool]
          Length = 552

 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 51/319 (15%), Positives = 94/319 (29%), Gaps = 84/319 (26%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL--TTATLEEKVPMWIRNTKHGW 58
           +R+ GR  +  R + ++    + + G   +  G T  L   TA+    +P        G 
Sbjct: 21  LRVDGRSPDHFRRLQIS---FRRSNGHAEIALGRTRCLSQVTASPFALLPT--DRASDGE 75

Query: 59  ITAEYGMLPRSTGNR-----------VKREAVSGRQGGRSQEIQRMIGRALR------SV 101
           I+    + P                     A + R+  +S E++R + R LR       V
Sbjct: 76  ISFRVALSPSIPPTSAELAGQSALSASLAAADTRRRSTKSSELERELERMLRRLLKDSGV 135

Query: 102 VDLSALGSRQ------IIIDCDVIQADGGTRTAAITGAWVALHD------------CLQH 143
           VD  AL  +       + +   V++ DG  R  A+  A   L               + H
Sbjct: 136 VDTEALCIQSGKWAWHVRVAVTVVEDDGNLRDTALLAALCGLMHFKKEAVTFDGDQAVFH 195

Query: 144 MEDCSNKFQLSQ------------VLKGHVAAISCGMLCGY------------------- 172
                    L                +G +  +S     G                    
Sbjct: 196 RAADREPLPLCIHHLPILVSFAFLPTRGSLLNLSAPKGEGEDEEDALPEPYSSQTAGKRE 255

Query: 173 ----------PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222
                      +VD    E++T+    +  +   G I  +            H   + NL
Sbjct: 256 DERDDEDDLDYVVDPSALEEATLPGKVSIAVGKQGDICGMYKVG-GPVLRFSHLIKLTNL 314

Query: 223 AKDRIADLIKLQKDVISNE 241
           A  +  +L+ + +  +  E
Sbjct: 315 ATAKAKELLSIVQAAVQQE 333


>gi|148703327|gb|EDL35274.1| exosome component 8, isoform CRA_c [Mus musculus]
 gi|148703328|gb|EDL35275.1| exosome component 8, isoform CRA_c [Mus musculus]
          Length = 90

 Score = 61.6 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 2  RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
          R  GR+  + R  ++       A+GS LVK G+T ++     E   P  +     G++
Sbjct: 23 RPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP-VDAPDRGYV 79


>gi|331221670|ref|XP_003323509.1| hypothetical protein PGTG_05411 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309302499|gb|EFP79090.1| hypothetical protein PGTG_05411 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 298

 Score = 61.6 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 69/215 (32%), Gaps = 43/215 (20%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR   R E  +R +++   +   ++GS    FGD   L   T   +V   IR+ K     
Sbjct: 4   MRSDSRTEADIRSLTMRMSILSRSDGSAQFSFGDLKALGAVTGPAEV--RIRDEKPTEAF 61

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            +  ++P             G  G  ++ +   I      ++ L       I I+   + 
Sbjct: 62  VDVIVVPVC-----------GLPGPPTKSLAHSIKSFFTPLILLKKYPRSLIQINLQTLS 110

Query: 121 ------ADG---GTR------------------TAAITGAWVALHDCLQHMEDCSNKFQL 153
                  +G   GT                    A I  A +AL D    M  C+    L
Sbjct: 111 KPSDRWTNGFTTGTLEPTATVPLFEETQSVSEKAALINAASLALLDAGVGMRGCAFAVGL 170

Query: 154 SQVLKGHVAA---ISCGMLCGYPIVDLDYGEDSTI 185
           + +    V+        +     ++D    E+S+ 
Sbjct: 171 AILPPSAVSPNHNNPQALESDLIVLDPSPTEESSA 205


>gi|62733253|gb|AAX95370.1| 3' exoribonuclease family, domain 1, putative [Oryza sativa
           Japonica Group]
          Length = 185

 Score = 61.6 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R+  + R  ++       A GS LV+ GDT +L +  LE   P        G I 
Sbjct: 39  VRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASIKLEVMSPSGEA-PDEGSIA 97

Query: 61  AEYGMLPRSTG-NRVKREAV 79
            E+ M P  +   R  R A 
Sbjct: 98  VEFHMPPICSPLVRPGRPAE 117


>gi|254586253|ref|XP_002498694.1| ZYRO0G16412p [Zygosaccharomyces rouxii]
 gi|238941588|emb|CAR29761.1| ZYRO0G16412p [Zygosaccharomyces rouxii]
          Length = 306

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 70/239 (29%), Gaps = 42/239 (17%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR  +Q R++ +         G   V  G T +    + +   P   R    G   
Sbjct: 23  LRLDGRSFDQFRDVDIKFG---KEYGDVTVTMGKTKIHCRISCQIAQPYEDR-PFEGLFL 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQ-RMIGRALR--SVVDLSALGSR------Q 111
                 P +          +G   G  + +  R+I +A+R    +D+  L          
Sbjct: 79  ISTETSPMAGPQ-----FENGNSTGEDEVLCVRIIEKAVRRSGALDVEGLCIVAGSKCWA 133

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHV 161
           I  D   +  DGG   A+      AL    +           +     +  +   +    
Sbjct: 134 IRADVHFLDCDGGLLDASCIAVMTALLHFKKPDITVLGDRVTVHPTDEREPVPLGILHIP 193

Query: 162 AAISCGMLC--------------GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
             ++                      I+D +  E+   D      +  +  +V+V  + 
Sbjct: 194 ICVTFSFFNPQDTEENIKGDSNAEIAIIDANLKEELLRDGTLTVTLNKNREVVQVSKAG 252


>gi|156056118|ref|XP_001593983.1| hypothetical protein SS1G_05411 [Sclerotinia sclerotiorum 1980]
 gi|154703195|gb|EDO02934.1| hypothetical protein SS1G_05411 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 344

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 83/300 (27%), Gaps = 72/300 (24%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA-------------------T 42
           R +GR   Q R   +      +AEGS +V+ GDT ++                      T
Sbjct: 40  RANGRSPTQFRGPHINTGSLTHAEGSAVVRIGDTAVVCGVRGEILLASNVGTYRVDKSTT 99

Query: 43  LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI------QRMIG- 95
                P +    +   +     +    +   +  +  +      S  I       RM+  
Sbjct: 100 APSSRPGYNEAKELDLLVPNIELATGCSPAFLPGQPPTTLAQSLSTRIYSLLHSSRMVDD 159

Query: 96  RALR---SVVDLSALGSR-----------------QIIIDCDVIQADGGTRTAAITGAWV 135
             LR      DL+                       + ID   I  DG    AA      
Sbjct: 160 EDLRIWYQPPDLNEQDRMEDEEEPESVEPEVKAFWTLYIDILFISLDGNPFDAAWAAVVS 219

Query: 136 AL-----------HDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY-----------P 173
           AL            D    + D          L+G   A++C +                
Sbjct: 220 ALRNVRLPKAHWDVDREMILCDDEISLSKRLNLRGLPVAVTCLVFKAKEQKRGKDKKYWV 279

Query: 174 IVDLDYGEDSTIDVDANFVM---TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
           + D D  E+   D     V+        I+ +       T  +D    +L LA+ R  +L
Sbjct: 280 LADPDTFEEGLCDESITMVVDCEAGKPKIMGLSKVG-GTTVGRDEMKHILELAETRWHEL 338


>gi|46116870|ref|XP_384453.1| hypothetical protein FG04277.1 [Gibberella zeae PH-1]
          Length = 283

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 60/188 (31%), Gaps = 20/188 (10%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKF------G--DTHLLTTATLEEKVPMWIRNTKHG 57
           R  N +R   L   V+  A GS  ++       G     L  T      +P     + H 
Sbjct: 31  RAANGIRAQYLKTGVTPSASGSAYLEIESQDASGSKGMKLTCTVHGPRSLPRSAPFSPHM 90

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            ++      P +T  R +R  +        +++   +  ALR  +         + +   
Sbjct: 91  VLSTHVKYAPFAT--RQRRGYLR---DSSERDLSSHLEAALRGAIIADRWPKSGVDVIVT 145

Query: 118 VIQADGGTRTAAITGA-------WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           VI+ D     A   G+        ++    +               + G VAA+  G   
Sbjct: 146 VIEGDQAREVAVEQGSEEWDMMNVLSGCITVAAAALADAGIDCVDTVSGGVAALVLGQDN 205

Query: 171 GYPIVDLD 178
             PI+ LD
Sbjct: 206 NEPIMVLD 213


>gi|119191880|ref|XP_001246546.1| hypothetical protein CIMG_00317 [Coccidioides immitis RS]
          Length = 331

 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 71/240 (29%), Gaps = 49/240 (20%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKF---------GDT--------HLLTTATLEEKVP 48
           R+  ++R+I L   V   A GS  ++            T         L+ T      +P
Sbjct: 39  RKAAELRKIFLKSGVIPSASGSAYLELQPSNDPAYKSRTLIPPSSSLKLVCTVHGPRPLP 98

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
                + +  ++      P +   R +R  +         ++   +  AL  ++      
Sbjct: 99  RSAPFSPNLLLSTHVKFAPFA--GRRRRGYIRDMYER---DLAVHLETALGGMIIGDRWP 153

Query: 109 SRQIIIDCDVIQA------------------DG----GTRTAAITGAWVALHDC-LQHME 145
              + +  ++++                   DG        + IT A  A+ D  +  ++
Sbjct: 154 KSGLDVTVNILEGEDDRWWGDSLSSGPLGGVDGWGSMNVLASCITVASAAIVDARIDCLD 213

Query: 146 DCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDVDANFV--MTDSGHIVEV 202
             +         K  ++  +     G   ++D D  E          V  M     I EV
Sbjct: 214 LLAGGVAAIVEEKDRMSQDTNSKEQGRYLVLDPDPSE-HRDIASLCIVGYMPSRDEITEV 272


>gi|302696003|ref|XP_003037680.1| hypothetical protein SCHCODRAFT_35111 [Schizophyllum commune H4-8]
 gi|300111377|gb|EFJ02778.1| hypothetical protein SCHCODRAFT_35111 [Schizophyllum commune H4-8]
          Length = 206

 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 57/179 (31%), Gaps = 34/179 (18%)

Query: 12  REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           REIS++       +GS    FGDT  L + +   +V +          T E  M P S  
Sbjct: 1   REISVSFDGLARVDGSARFSFGDTTALASVSGPIEVRLAAEQPARA--TFEVNMRPISNV 58

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI-----QADGGTR 126
                          ++ I   +  AL   + L       I +    +     ++D    
Sbjct: 59  -----------PATEAKSIAASVRAALSPSIFLQQYPRTLIQLMLQALSPARAKSDDSLL 107

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----PIVDLDYGE 181
            A I    +AL +              S  ++G V A+    +        +VD D  E
Sbjct: 108 AAMINAGSLALLNAG------------SAAMRGVVCAVPVARIPSGDSTILVVDPDTDE 154


>gi|6320486|ref|NP_010566.1| Rrp45p [Saccharomyces cerevisiae S288c]
 gi|14285753|sp|Q05636|RRP45_YEAST RecName: Full=Exosome complex component RRP45; AltName:
           Full=Ribosomal RNA-processing protein 45
 gi|266618484|pdb|2WP8|A Chain A, Yeast Rrp44 Nuclease
 gi|1230649|gb|AAB64446.1| Ydr280wp [Saccharomyces cerevisiae]
 gi|45269387|gb|AAS56074.1| YDR280W [Saccharomyces cerevisiae]
 gi|151942253|gb|EDN60609.1| 3'-5'-exoribonuclease [Saccharomyces cerevisiae YJM789]
 gi|190404776|gb|EDV08043.1| 3'->5' exoribonuclease [Saccharomyces cerevisiae RM11-1a]
 gi|256270394|gb|EEU05592.1| Rrp45p [Saccharomyces cerevisiae JAY291]
 gi|259145518|emb|CAY78782.1| Rrp45p [Saccharomyces cerevisiae EC1118]
 gi|285811296|tpg|DAA12120.1| TPA: Rrp45p [Saccharomyces cerevisiae S288c]
 gi|323309622|gb|EGA62830.1| Rrp45p [Saccharomyces cerevisiae FostersO]
 gi|323349166|gb|EGA83396.1| Rrp45p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 305

 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 55/165 (33%), Gaps = 18/165 (10%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR  +Q R++ +T        G   VK G+T +    + +   P   R    G    
Sbjct: 24  RLDGRSFDQFRDVEITFG---KEFGDVSVKMGNTKVHCRISCQIAQPYEDR-PFEGLFVI 79

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEI-QRMIGRALR--SVVDLSALGSR------QI 112
              + P +          +G   G  + +  R+I +++R    +D+  L          +
Sbjct: 80  STEISPMAGSQ-----FENGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAV 134

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL 157
             D   +  DGG   A+       L    +       +  +   +
Sbjct: 135 RADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQIIVHPV 179


>gi|146414660|ref|XP_001483300.1| hypothetical protein PGUG_04029 [Meyerozyma guilliermondii ATCC
           6260]
 gi|146391773|gb|EDK39931.1| hypothetical protein PGUG_04029 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 252

 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 18/151 (11%)

Query: 16  LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST--GNR 73
           L   +   A GS  V+  D  +  +       P+     +    + E   LP  T     
Sbjct: 44  LKTGLVDTASGSAYVEADDCIVQVSVYGPR--PIRGSFIEKASFSVECKFLPYVTKVAAE 101

Query: 74  VKREAVSGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA-- 129
            +    +G+ G  S E  I   +  AL   + L       I I   VI      ++A+  
Sbjct: 102 HQNTNPNGKPGMNSIEQRISTYVETALLPCLLLENYPKSTIDIYVTVI----ANKSASLL 157

Query: 130 ------ITGAWVALHDCLQHMEDCSNKFQLS 154
                 +  + +AL D    ++D       +
Sbjct: 158 ELTNWIVNCSSLALVDSAIEIKDIVTGGVAT 188


>gi|255725482|ref|XP_002547670.1| hypothetical protein CTRG_01977 [Candida tropicalis MYA-3404]
 gi|240135561|gb|EER35115.1| hypothetical protein CTRG_01977 [Candida tropicalis MYA-3404]
          Length = 299

 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 88/272 (32%), Gaps = 43/272 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RLS R+ +++R I +    SKY  G   + +G T L+   +     P +      G  T
Sbjct: 21  IRLSNRKFDELRSIDIKLSDSKY--GYVELTWGSTKLIVNISARIIEP-YKDRPFEGIFT 77

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL----GSR--QIII 114
               +        +  E +      R+ E    I R+  + +DL  L    G +  +III
Sbjct: 78  INCELPNNLKSEEIIDENLLS----RTLEKS--IRRS--NSLDLENLCIIAGEKVWEIII 129

Query: 115 DCDVIQADGGTRTAAITGAWVALHD-----------CLQHMEDCSNKFQLSQVLKGHVAA 163
           D + +  DG    +      + L D               + D   +  +   +      
Sbjct: 130 DLNYLNYDGNLIDSGCLAIMIGLLDFKKNDISVTSNGGIKIFDLDERQPIELSILHIPIC 189

Query: 164 ISCGM--------------LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERA 209
           ++                 +    ++D D  E+   D      +  +  ++++  +    
Sbjct: 190 LTFSFFNLGSKEMNLKSDEINEIYLLDADSLEEYCRDGFLTITLNQNRDLIQLNKNG-GL 248

Query: 210 TFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
                    + + + + I  L  L K  +   
Sbjct: 249 PIDAQQLLQLCHNSMEIIDKLTNLIKTTVKTH 280


>gi|21362905|sp|Q9D0M0|EXOS7_MOUSE RecName: Full=Exosome complex exonuclease RRP42; AltName:
           Full=Exosome component 7; AltName: Full=Ribosomal
           RNA-processing protein 42
          Length = 291

 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 69/244 (28%), Gaps = 31/244 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R + +   V     GS  VK G T +L     E   P  +     G++ 
Sbjct: 22  LRVDGRGCEVYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEI---QRMIGRALRSVVDLSALGSR------Q 111
                   +T     R            E+      I    +S VDL +L          
Sbjct: 81  FFVDCSANATPEFEGRGG-----DDLGTEMLTPSTGIFNN-KSSVDLRSLCISPREHCWV 134

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS--NKFQLSQVLKGHVAAISCGML 169
           + +D  +++  G    A       AL +            +      L           +
Sbjct: 135 LYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAKDIELSDDPYDCIRLSV 194

Query: 170 CGYP------------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
              P            +VD    E++         +T  G +  ++    + +   +  F
Sbjct: 195 ENVPCIVTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVG-KGSLDPESIF 253

Query: 218 AMLN 221
            M+ 
Sbjct: 254 EMME 257


>gi|302406703|ref|XP_003001187.1| 3' exoribonuclease family protein [Verticillium albo-atrum
           VaMs.102]
 gi|261359694|gb|EEY22122.1| 3' exoribonuclease family protein [Verticillium albo-atrum
           VaMs.102]
          Length = 251

 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 15/127 (11%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKF----G--DT----HLLTTATLEEKVPMWIRNTK 55
           R  N MR + L   ++  A GS   +     G  DT     L+ T      +P     + 
Sbjct: 53  RPANTMRNLFLKTGIAPAASGSAYAEIEAPAGVSDTHAGMKLICTVHGPRALPRSAPFSP 112

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
           +  ++      P +T  R +R  +        +++   +  ALR VV         + + 
Sbjct: 113 YLVLSTHVKYAPFAT--RQRRGYLR---DASERDLSVHLETALRGVVIGERWPKSGVDVT 167

Query: 116 CDVIQAD 122
             +++ D
Sbjct: 168 VTILEGD 174


>gi|289617941|emb|CBI55518.1| unnamed protein product [Sordaria macrospora]
          Length = 357

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWI-RNTKH 56
           R +GR  ++ R I +      +A GS LV+ GDT ++     E      +P +  R   +
Sbjct: 38  RTNGRAPHEARPIHIHTSSLAHANGSALVRTGDTTVVCGVRAEILPVTSIPQYRPREPTY 97

Query: 57  GWITAEYG 64
               AEY 
Sbjct: 98  SEDNAEYE 105


>gi|320036434|gb|EFW18373.1| 3' exoribonuclease [Coccidioides posadasii str. Silveira]
          Length = 312

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 71/240 (29%), Gaps = 49/240 (20%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKF---------GDT--------HLLTTATLEEKVP 48
           R+  ++R+I L   V   A GS  ++            T         L+ T      +P
Sbjct: 20  RKAAELRKIFLKSGVIPSASGSAYLELQPSNDPAYKSKTLIPPSSSLKLVCTVHGPRPLP 79

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
                + +  ++      P +   R +R  +         ++   +  AL  ++      
Sbjct: 80  RSAPFSPNLILSTHVKFAPFA--GRRRRGYIRDMYER---DLAVHLETALGGMIIGDRWP 134

Query: 109 SRQIIIDCDVIQA------------------DG----GTRTAAITGAWVALHDC-LQHME 145
              + +  ++++                   DG        + IT A  A+ D  +  ++
Sbjct: 135 KSGLDVTVNILEGEDDRWWGDSLSSGPLGGVDGWGLMNVLASCITVASAAIVDARIDCLD 194

Query: 146 DCSNKFQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDVDANFV--MTDSGHIVEV 202
             +         K  ++  +     G   ++D D  E          V  M     I EV
Sbjct: 195 LLAGGVAGIVEEKDRMSQDTNSKEQGRSLVLDPDPSE-HRDIASLCIVGYMPSRDEITEV 253


>gi|156841697|ref|XP_001644220.1| hypothetical protein Kpol_1051p10 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114858|gb|EDO16362.1| hypothetical protein Kpol_1051p10 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 305

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 49/147 (33%), Gaps = 18/147 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR+ +Q R++ +         G   V  G+T +    +     P   R    G    
Sbjct: 24  RLDGREFDQFRDVEIDFG---KEFGDATVTMGNTKVQCRVSCSIAQPYEDR-PFEGLFFI 79

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEI-QRMIGRALR--SVVDLSALGSR------QI 112
                P +          +G   G  + +  R+I +A+R    +D+  L          I
Sbjct: 80  STESSPMAGPQ-----FENGNNTGEDEVLCARIIEKAVRRSGALDIEGLCIVAGSKCWAI 134

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHD 139
             D   +  DGG   A+      AL  
Sbjct: 135 RADVHFLNCDGGFIDASCIAVMAALMH 161


>gi|312374015|gb|EFR21670.1| hypothetical protein AND_16645 [Anopheles darlingi]
          Length = 371

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 61/184 (33%), Gaps = 27/184 (14%)

Query: 81  GRQGGRSQEIQRMIGRALR--SVVDLSALG---SRQII---IDCDVIQADGGTRTAAITG 132
           GRQ   S  + R++ RAL+    VDL +L      ++    ID  V+  +G         
Sbjct: 19  GRQSDESVHLNRILERALKDSGCVDLESLCLVAEEKVWNLRIDVTVLNHEGNVIDCCSIA 78

Query: 133 AWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAAISCGMLCG--YPIVDLDYG 180
           A  AL    +           +     K  +   L  +   +S  +       + D  Y 
Sbjct: 79  ALTALAHFKRPDITVDGENVIVHTLEEKEPIKVTLFHYPICVSYAIFNKGTVAVADPSYL 138

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL---AKDRIADLIKLQKDV 237
           E+   +    F +   G +  +       T +      +L     A  R   L++  K  
Sbjct: 139 EERVAEAMMVFGINSYGELCGLHLGG--ITLTSADL--LLRTSVKASKRARMLVEKIKSA 194

Query: 238 ISNE 241
           I+ +
Sbjct: 195 IAKD 198


>gi|308161157|gb|EFO63615.1| Exosome complex exonuclease, putative [Giardia lamblia P15]
          Length = 315

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 59/174 (33%), Gaps = 28/174 (16%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   + R+ISL+      A GS LV+ G T ++ ++ L       +R +    +T 
Sbjct: 16  RIDGRGIAETRDISLS---FFTARGSVLVEKGKTKVVASSKLAVLSGKQLR-SGRVTVTC 71

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS---------VVDLSALGSRQI 112
                 + T   V               +  ++     S         V+   A+    I
Sbjct: 72  NLSSELKETIEHVN--------------LADLLNSTFASDQIVPKDTLVIIPGAMY-FVI 116

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC 166
               +V+Q DGG R A I  A  +++              +    K  V   + 
Sbjct: 117 RCSVEVLQDDGGLRDACIIAAGTSIYHMGIPNVQAYRGSSIDTCNKKQVEEFTT 170


>gi|58264608|ref|XP_569460.1| exosome complex exonuclease rrp45 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134109839|ref|XP_776469.1| hypothetical protein CNBC5230 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259145|gb|EAL21822.1| hypothetical protein CNBC5230 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57225692|gb|AAW42153.1| exosome complex exonuclease rrp45, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 281

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 84/261 (32%), Gaps = 33/261 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           RL GR   QMR++          +  G    + G T +L   +    V         G++
Sbjct: 24  RLDGRLPLQMRDVHYIFG-----DELGCVECRLGKTAILAQVSATI-VKPRDDRPYEGFL 77

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--Q 111
                + P ++         +GR G     I R++ +++R    +D  AL    G +  Q
Sbjct: 78  LINSEIGPMASSVY-----ENGRPGDDEVMIGRLLEKSIRRTEAIDREALCILAGEKVWQ 132

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDC----------SNKFQLSQVLKGHV 161
           + +    +   G     A      AL    +   +             +  +   +    
Sbjct: 133 LRLTLHFLSDSGNLLDCAALAGMAALKHFRKPDVEVIGDEVIIHSPEERAPVPLAIHHTP 192

Query: 162 AAISCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
             ++        PI+D  + E           +     I  +  +   A    +    ++
Sbjct: 193 LCLTFAYFENLPPILDPSHVEMMLCSGTLTLTLNAQREICVLSKAG-GAPLGAEEIMGVV 251

Query: 221 NLAKDRIADLIKLQKDVISNE 241
            +  D++ +L++  ++ +  +
Sbjct: 252 KVGVDKVRELVRHLEEELEKD 272


>gi|123464254|ref|XP_001317083.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
           vaginalis G3]
 gi|121899808|gb|EAY04860.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
           vaginalis G3]
          Length = 203

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 70/201 (34%), Gaps = 35/201 (17%)

Query: 2   RLS-GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           RL   R   + REI+  + +   ++GS  V+ G T ++      +++      T    I 
Sbjct: 3   RLDTSRVYEEEREIACEKGLCISSQGSSRVRVGKTEVIVNIVGPKQMVFREIETGKVNIK 62

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           A+      S                    I +++  A+ + +   A     + +   ++ 
Sbjct: 63  AK------SYPENPT--------------INKIVADAIENSLKCDAYPDSNLEVSVTIVC 102

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
            DGG +  A+    +AL D    M                +AA S  +     + D +  
Sbjct: 103 DDGGLKACAVNATILALVDAGFEM-------------NHLLAASSLAVKGDILVNDPNAS 149

Query: 181 EDSTIDVDANFVM-TDSGHIV 200
           E+   D  A FV   DS  I+
Sbjct: 150 EEELYDGAATFVYEIDSQKII 170


>gi|156096300|ref|XP_001614184.1| exosome complex exonuclease [Plasmodium vivax SaI-1]
 gi|148803058|gb|EDL44457.1| exosome complex exonuclease, putative [Plasmodium vivax]
          Length = 281

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 78/229 (34%), Gaps = 38/229 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR  +  R I + + +   A+GS  V   + +++    L    P  +     G I 
Sbjct: 15  IRVDGRTLSTYRTIEINKNILVSADGSSSVMNEENNVICGIKLSLLTPS-LDAPDEGVIN 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMI-GRALRSVVDLSALG--SRQ----II 113
            +         NR+K++ +        Q +  +I    L++ +D   +          + 
Sbjct: 74  LQIDCPASVVANRIKKDHL--------QIMSSIIYDLCLKNNIDRKKMCILPSTFVWGVD 125

Query: 114 IDCDVIQADGGTRTAAITGAWVALHD----------------------CLQHMEDCSNKF 151
           I+  V+ A GG         +VAL D                      C  +  +     
Sbjct: 126 INVMVLNAGGGLLDIISMAIYVALKDTVVPVVKPKKKIDESNTFHHTKCADYQVEIVENQ 185

Query: 152 QLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIV 200
           + +   +     +S G +    + D+   E+  ++      +T SG  V
Sbjct: 186 KTNFPYENVPICVSIGEINNKYVYDMSKVEEELVENIFVVAVTSSGKCV 234


>gi|226329677|ref|ZP_03805195.1| hypothetical protein PROPEN_03587 [Proteus penneri ATCC 35198]
 gi|225202863|gb|EEG85217.1| hypothetical protein PROPEN_03587 [Proteus penneri ATCC 35198]
          Length = 267

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 19/150 (12%)

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
           G+  +RE   GR G     I R+I R LR +     L   QI+     +         A+
Sbjct: 75  GSFFRRE---GRPGEGETLIARLIDRPLRPLFPEGFLNEIQIVATVVSVNPQVNPDIVAM 131

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA   L                     G +     G + G  +++    E     +D  
Sbjct: 132 IGASAVLA-------------LSGVPFNGPIGGARVGFIDGQYVLNPTVDELKVSKLDLV 178

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAML 220
              T +G ++ V+  +E    S++     +
Sbjct: 179 VAGT-AGAVLMVE--SEADLLSEEEMLGAV 205


>gi|296081159|emb|CBI18185.3| unnamed protein product [Vitis vinifera]
          Length = 407

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 73/216 (33%), Gaps = 29/216 (13%)

Query: 47  VPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDL 104
           +  +      G ++      P +  +       +GR G  + E+ R+I R LR    VD+
Sbjct: 9   IQPYRDRPNEGTLSIYTEFSPMADPS-----FEAGRPGEAAVELGRVIDRGLRESRAVDM 63

Query: 105 SALGS------RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN--------- 149
            +L          I ID  +I   G    AA   A  AL    +                
Sbjct: 64  ESLCVLAGKLVWSIRIDLHIIDNGGNLIDAANIAALAALLTFRRPECSFGGEDGQELIVH 123

Query: 150 ----KFQLSQVLKGHVAAISCGMLCGY--PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ 203
               +  L  ++     A++  ++      ++D  + E++ +       +  +G +  +Q
Sbjct: 124 PPEVREPLPLIVHHLPIAVTFAIIGNENIMVIDPTHSEEAVMGGRMTATLNTNGDVCAIQ 183

Query: 204 GSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            +       Q      L +A  + AD+    K+ + 
Sbjct: 184 KAGGEGII-QSVIMQCLRIASVKAADITSKIKNAVE 218


>gi|118486664|gb|ABK95169.1| unknown [Populus trichocarpa]
          Length = 403

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 64/219 (29%), Gaps = 35/219 (15%)

Query: 47  VPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDL 104
           V  +      G +       P +  +        GR G  + E+ R++ R LR    VD 
Sbjct: 9   VQPYQDRRNEGMLLIFTEFSPMADPS-----FEPGRPGESAVELGRIVDRGLRESRAVDT 63

Query: 105 SALGSRQ------IIIDCDVIQADGGT----------------RTAAITGAWVALHDCLQ 142
            +L          I ID  ++   G                  R     G        + 
Sbjct: 64  ESLCVLSGKLVWAIRIDLHILDNGGNLVDAANIAALAALLTFRRPECTLGGDDGQEVTVH 123

Query: 143 HMEDCSNKFQLSQVLKGHVAAISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIV 200
             E+      L  ++     AI+   L   G  +VD  + E++ +       +   G I 
Sbjct: 124 PPEERE---PLPLIVHHLPIAITFAFLGSEGKMVVDPTHSEEAVMGGRMTVTVNAIGDIC 180

Query: 201 EVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            +Q +       Q      L LA      + K   + + 
Sbjct: 181 SIQKAG-GEGVPQSVIMHCLQLASMSAESITKKINNAVE 218


>gi|1323143|emb|CAA97098.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|323337705|gb|EGA78950.1| Rrp46p [Saccharomyces cerevisiae Vin13]
          Length = 256

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 80/245 (32%), Gaps = 46/245 (18%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
           +     +  + +GS      DT ++ + T   +            +              
Sbjct: 36  VQAEIGILDHVDGSSEFVSQDTKVICSVTGPIEPKARQELPTQLAL-------------- 81

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSV----VDLSALGSRQIIIDCDVI-----QADGG 124
              E +     G +   ++++   LR+V    +       +   I C ++     +A+  
Sbjct: 82  ---EIIVRPAKGVATTREKVLEDKLRAVLTPLITRHCYPRQLCQITCQILESGEDEAEFS 138

Query: 125 TR--TAAITGAWVALHDCLQHMEDC-----SNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
            R  +  I  A++AL D    +            + +  +     A    +      + L
Sbjct: 139 LRELSCCINAAFLALVDAGIALNSMCASIPIAIIKDTSDIIVDPTAEQLKISLSVHTLAL 198

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           ++   +   V  N ++ DS              F++D  F++L L + +  +L+   + +
Sbjct: 199 EFV--NGGKVVKNVLLLDS-----------NGDFNEDQLFSLLELGEQKCQELVTNIRRI 245

Query: 238 ISNEV 242
           I + +
Sbjct: 246 IQDNI 250


>gi|77415113|ref|ZP_00791153.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           515]
 gi|77158837|gb|EAO70108.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           515]
          Length = 190

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 19/142 (13%)

Query: 104 LSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA 163
           +       I +  +V++++G +  A+I    +AL                   +K  VA 
Sbjct: 1   MEEFP-YAIRLVAEVLESNGSSSQASICAGTLAL-------------MAGGVPIKAPVAG 46

Query: 164 ISCGMLCG----YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
           I+ G++        + D+   ED   D+D     T  G I  +Q   +    +       
Sbjct: 47  IAMGLISDGTNYTVLTDIQGLEDHFGDMDFKVAGTREG-ITALQMDIKIEGITPQILEEA 105

Query: 220 LNLAKDRIADLIKLQKDVISNE 241
           L  AK    +++ +    I+  
Sbjct: 106 LAQAKKARFEILDVLHGAIAEP 127


>gi|70948509|ref|XP_743754.1| exosome complex exonuclease [Plasmodium chabaudi chabaudi]
 gi|56523406|emb|CAH76566.1| exosome complex exonuclease, putative [Plasmodium chabaudi
           chabaudi]
          Length = 434

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 63/181 (34%), Gaps = 21/181 (11%)

Query: 81  GRQGGRSQEIQRMIGRALRSVVDLSA-----LGSRQII---IDCDVIQADGGTRTAAITG 132
            +      EI+ +I R  ++   L+      +  +++    I+  VI+ DG    +    
Sbjct: 18  SKITDECLEIKNLIERIFKASNILNFESLCIIPYKKVWCLLINITVIENDGNLYDSCYLS 77

Query: 133 AWVALH----------DCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC--GYPIVDLDYG 180
           A+ AL           +    + D       S  +       +          ++D    
Sbjct: 78  AYSALVHFRNNSVNIDNAGNVIIDEEEVNYSSLSVHNSPILTTFAYFNFEEICLIDPSSY 137

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           E+  +    +  +  +G+++ +         S D     + LAK R+  ++K+ +D +  
Sbjct: 138 EEEFMSSKLSIAINKNGNLISILKPG-GLPISYDKILHGIELAKKRVKSILKILEDALKE 196

Query: 241 E 241
           +
Sbjct: 197 D 197


>gi|167521539|ref|XP_001745108.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776722|gb|EDQ90341.1| predicted protein [Monosiga brevicollis MX1]
          Length = 313

 Score = 59.0 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 82/277 (29%), Gaps = 37/277 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GRQ +  R   +   +   A GS   +   T +L     E  V +  +N   G I 
Sbjct: 24  IRNDGRQRHHARPYHIETGLVSNANGSARAQHVGTDVLVGVKAERGVALG-QNEDEGQIE 82

Query: 61  AEYGMLPRSTGNRVKR---------EAVSGRQGGRSQE-IQRMIGRAL------RSVVDL 104
               M  ++                 + +    GR +E   R I  AL      R  +D 
Sbjct: 83  VLSRMFKKTQHALGNVVEQFAVQFASSATAMLSGREREDYGRAIALALQEMADVRGAIDR 142

Query: 105 SALG------SRQIIIDCDVIQADGG-TRTAAITGAWVALHDCLQHMEDCSNKFQLSQV- 156
            AL       +  + +D  ++ A+GG     A    + AL  C               V 
Sbjct: 143 QALCIIAGREAFTLKVDVMILAANGGAIYDTAAVAVYAALASCDIPSVTLVKDADGDVVD 202

Query: 157 ------------LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
                       +       +   +  + ++D    E +  D      +   G +   + 
Sbjct: 203 WEFADTPDHQLDVSRLPLLTTIASINDFAVLDATTAEMACADAAMILGIDAQGELCTCRL 262

Query: 205 SAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
                    +    M  +A++     +   ++ +  E
Sbjct: 263 VGRTGGVDPELLTEMTLMAQEAGKASVASVRNALQQE 299


>gi|73985827|ref|XP_864681.1| PREDICTED: similar to Exosome complex exonuclease RRP42 (Ribosomal
           RNA processing protein 42) (Exosome component 7) (p8)
           isoform 2 [Canis familiaris]
          Length = 224

 Score = 58.6 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 42/125 (33%), Gaps = 12/125 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R + +   V     GS  VK G T +L     E   P  +     G++ 
Sbjct: 22  LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LEKPNEGYLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALG----SRQIII 114
                   +T     R            EI   + R    +S +DL +L         I+
Sbjct: 81  FFVDCSANATPEFEGRGG-----DDLGTEIANTLYRIFNNKSSIDLKSLCISPREHCWIL 135

Query: 115 DCDVI 119
             DV+
Sbjct: 136 YVDVL 140


>gi|255718091|ref|XP_002555326.1| KLTH0G06644p [Lachancea thermotolerans]
 gi|238936710|emb|CAR24889.1| KLTH0G06644p [Lachancea thermotolerans]
          Length = 305

 Score = 58.6 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 81/277 (29%), Gaps = 55/277 (19%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           +RL  R+ ++ R + +        +  G   V  G T +    +     P   R    G 
Sbjct: 23  LRLDSRKFDEFRSVEIELG-----DDYGDVTVTMGKTKVHCRISCTITQPYEDR-PFEGL 76

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI-QRMIGRALR--SVVDLSALGSR----- 110
                   P +          +G   G  + +  R+I +A+R    +D+  L        
Sbjct: 77  FFISTETSPMAGPQ-----FENGNNTGEDEVLCSRIIEKAVRRSGALDVEGLCIVAGSKC 131

Query: 111 -QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK----------G 159
             +  D   +  DGG   A+     V L    +     S +      +            
Sbjct: 132 WAVRADVHFLNCDGGFIDASCIAVMVGLLHFKKPDVSVSGEQVTIHPVDEREPVPLGVLH 191

Query: 160 HVAAISCGM---------LCGY-----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
               +S            + G       I+D    E+   D      +  +  +V+V   
Sbjct: 192 VPICVSFSFFNPEDAEENIKGESNSEICIIDATLKEELLRDGTLTVTLNKNREVVQV--- 248

Query: 206 AERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           ++      D    ++           K+  + I++++
Sbjct: 249 SKAGGLPMDAL-TLMECCHKA----YKI-TEAITDQI 279


>gi|115908435|ref|XP_791327.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115926434|ref|XP_001179322.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 336

 Score = 58.6 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 49/168 (29%), Gaps = 14/168 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR     R   L   V     GS  +K  +T +L      E  P    N   G I 
Sbjct: 162 LRSDGRTCLSYRNFELECGVVSNTSGSARLKLSNTQVLVGVKA-EMGPPNPLNPSRGGIE 220

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSAL------GSRQI 112
                   ++     R          + EI  M+G     + ++D  +L          +
Sbjct: 221 FFVDFSANASPKFAGRGG-----DELAAEISNMLGLVYKNKKMLDYKSLCVIAGQCVWTL 275

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160
             D  V++  G    A       AL++    +            LK  
Sbjct: 276 YADIVVLECGGNLLDAIALAVKAALYNTRYMLSKIKKSAACLSCLKCF 323


>gi|330982939|gb|EGH81042.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 275

 Score = 58.2 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW--- 58
           R+ GR    +R +++   V     GS L   G+T  L  ATL       + +T  G    
Sbjct: 186 RIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKD 245

Query: 59  -ITAEYGMLPRSTGNRVKREAVSGRQ 83
                Y   P S G    R   +GR+
Sbjct: 246 PFMLHYNFPPFSVGE-CGRMGGAGRR 270


>gi|302830011|ref|XP_002946572.1| hypothetical protein VOLCADRAFT_86657 [Volvox carteri f.
           nagariensis]
 gi|300268318|gb|EFJ52499.1| hypothetical protein VOLCADRAFT_86657 [Volvox carteri f.
           nagariensis]
          Length = 311

 Score = 58.2 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 85/269 (31%), Gaps = 30/269 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR   + R +++       A+GS LVK G T +L    LE   P        G + 
Sbjct: 35  VRPDGRPLGRARAVTIGAGAITSADGSALVKIGRTTVLGGVRLEIIRPDETA-PSQGQLA 93

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMI--GRA--LRSVVDLSALGSRQIIIDC 116
               + P S+ +               +    ++  G A  L S+       + +  +D 
Sbjct: 94  LNVELAPFSSQDYRPGRQPDHVSAVTEKLTSALLTGGDAVQLSSLCIAEGKAAWRASLDL 153

Query: 117 DVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF----------------QLSQVLKGH 160
            V+ ADG     A+  A  AL +        + +                     ++ G 
Sbjct: 154 YVLDADGCVLDTALLAATAALRNTRIPAVRSTREGHYVAVGAGSSGSGGAGGDGGLVAGS 213

Query: 161 VAAISCG---------MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
             A+  G         +   Y +VD    E+       + V+   G +  V  +  +   
Sbjct: 214 PTAVGMGRCPLGLTCCLYRNYILVDPTAEEERLAACSVSVVLDQHGRLQGVYKAGGKVLA 273

Query: 212 SQDHFFAMLNLAKDRIADLIKLQKDVISN 240
                      A+ R  +L  L +  +S 
Sbjct: 274 DAATLVKCTEAARLRYRELSGLLEQSLSQ 302


>gi|32566065|ref|NP_508024.2| EXOSome (multiexonuclease complex) component family member (exos-7)
           [Caenorhabditis elegans]
 gi|24817316|emb|CAB07377.2| C. elegans protein F31D4.1, confirmed by transcript evidence
           [Caenorhabditis elegans]
 gi|24817547|emb|CAB07412.2| C. elegans protein F31D4.1, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 312

 Score = 58.2 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 54/293 (18%), Positives = 82/293 (27%), Gaps = 64/293 (21%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH-LLTTATLE--------EKVPMWI 51
           +R  GR     R+I L R V     GSC V+ G T  +L    LE        EK P   
Sbjct: 21  IRNDGRSCQDFRQIILERGVLSGTNGSCRVQLGQTTDVLAGIKLELESYDAETEKEPKQP 80

Query: 52  RNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-------- 103
            N               S     +     G     ++E+      A    +D        
Sbjct: 81  INFNVD----------FSANASSQFAGKGG--DEYAEELSAAFQAAYSKALDIMPNLAKT 128

Query: 104 -LSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS--NKFQLSQVLKGH 160
            L+     +I +D  V+Q DG    A       AL D      D +  +  ++  VLK  
Sbjct: 129 QLADGYRWKINVDISVLQWDGSVSDAISIAIIGALSDLEFPEGDVAPDDGGKVRIVLKRP 188

Query: 161 VAA-----------------------ISCGMLCGYPIVDLDYGEDSTIDVDANFVM---- 193
             A                       ++   +    +VD    E+  I       +    
Sbjct: 189 KVAGNVRDENVQVAMWKLDVMRCPLLLTISKIGTANLVDCTPEEECCIRSQLLVGLAAIA 248

Query: 194 -----TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
                 +  + V             +    ML LA   +  L       + NE
Sbjct: 249 DSSENNEPNYDVTCVKQVGGGLLEMESIQEMLELAAKSVGGLYGALAKRLKNE 301


>gi|316970810|gb|EFV54682.1| DEAD-box helicase 1 [Trichinella spiralis]
          Length = 714

 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 76/220 (34%), Gaps = 21/220 (9%)

Query: 13  EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           E   T R  +   GSCLV    T LL +      V    +      +      +      
Sbjct: 499 EFRCTVRYVEDCTGSCLVSKRGTTLLISVHGPTDVKASKQLPDSAVVQVHLTTVS----- 553

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
              ++ + GR    S ++   +    +S++ +  L  R I I    +++DG     A+ G
Sbjct: 554 ---KDEIGGRSSIDSGQMTLFLQNICQSIILVKLLPKRLITIVVQELESDGCFMEVAVNG 610

Query: 133 AWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
             +AL +    M D      L+            G   G  +++    E++  D     V
Sbjct: 611 LCIALLESALPMNDMFAASTLAY----------YGGASGQILLNPTAKEETEADCVLCCV 660

Query: 193 MTDSGHIVE-VQGSAERATFSQDHFFAMLNLAKDRIADLI 231
             D  H+VE V     +          +L+ A+ +   ++
Sbjct: 661 YLD--HVVENVFSIWTKGNMPLSMLDQVLSQAETQSRQIL 698


>gi|59809424|gb|AAH89995.1| Exosc7 protein [Rattus norvegicus]
          Length = 257

 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 66/230 (28%), Gaps = 29/230 (12%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
           + +   V     GS  VK G T +L     E   P  +     G++         +T   
Sbjct: 1   VEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK-LERPSEGYLEFFVDCSANATPEF 59

Query: 74  VKREAVSGRQGGRSQEIQRMIGRAL--RSVVDLSALGSR------QIIIDCDVIQADGGT 125
             R            EI   + R    +S VDL +L          + +D  +++  G  
Sbjct: 60  EGRGG-----DDLGTEIANTLYRIFNNKSSVDLRSLCISPREHCWVLYVDVLLLECGGNL 114

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQ--VLKGHVAAISCGMLCGYP---------- 173
             A       AL +            + S+   L           +   P          
Sbjct: 115 FDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKIGC 174

Query: 174 --IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
             +VD    E++         +T  G +  ++    + +   +  F M+ 
Sbjct: 175 RHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVG-KGSLDPESIFEMME 223


>gi|37362654|ref|NP_011609.2| Rrp46p [Saccharomyces cerevisiae S288c]
 gi|118595829|sp|P53256|RRP46_YEAST RecName: Full=Exosome complex component RRP46; AltName:
           Full=Ribosomal RNA-processing protein 46
 gi|151943372|gb|EDN61685.1| 3'-5'-exoribonuclease [Saccharomyces cerevisiae YJM789]
 gi|190406885|gb|EDV10152.1| 3'->5' exoribonuclease [Saccharomyces cerevisiae RM11-1a]
 gi|207345132|gb|EDZ72051.1| YGR095Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256269404|gb|EEU04701.1| Rrp46p [Saccharomyces cerevisiae JAY291]
 gi|259146598|emb|CAY79855.1| Rrp46p [Saccharomyces cerevisiae EC1118]
 gi|285812288|tpg|DAA08188.1| TPA: Rrp46p [Saccharomyces cerevisiae S288c]
 gi|323348611|gb|EGA82855.1| Rrp46p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323355041|gb|EGA86872.1| Rrp46p [Saccharomyces cerevisiae VL3]
          Length = 223

 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 80/245 (32%), Gaps = 46/245 (18%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
           +     +  + +GS      DT ++ + T   +            +              
Sbjct: 3   VQAEIGILDHVDGSSEFVSQDTKVICSVTGPIEPKARQELPTQLAL-------------- 48

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSV----VDLSALGSRQIIIDCDVI-----QADGG 124
              E +     G +   ++++   LR+V    +       +   I C ++     +A+  
Sbjct: 49  ---EIIVRPAKGVATTREKVLEDKLRAVLTPLITRHCYPRQLCQITCQILESGEDEAEFS 105

Query: 125 TR--TAAITGAWVALHDCLQHMEDC-----SNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
            R  +  I  A++AL D    +            + +  +     A    +      + L
Sbjct: 106 LRELSCCINAAFLALVDAGIALNSMCASIPIAIIKDTSDIIVDPTAEQLKISLSVHTLAL 165

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           ++   +   V  N ++ DS              F++D  F++L L + +  +L+   + +
Sbjct: 166 EFV--NGGKVVKNVLLLDS-----------NGDFNEDQLFSLLELGEQKCQELVTNIRRI 212

Query: 238 ISNEV 242
           I + +
Sbjct: 213 IQDNI 217


>gi|225718446|gb|ACO15069.1| Exosome complex exonuclease RRP42 [Caligus clemensi]
          Length = 250

 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 77/242 (31%), Gaps = 45/242 (18%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPMWIRNTKHGW 58
           +R+ GRQ   +R + L   +  +A GS  V+  +T +L     E  E  P         +
Sbjct: 22  IRVDGRQRKDVRPMILETDIITHANGSARVQLSNTDVLVGVKAELCEHKPG---GGLEFY 78

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI------ 112
           +       P             GR G    ++   I   L S    + L +R I      
Sbjct: 79  VDCSANASP----------VFEGRGGE---DLALEIASTLSSSYSDNKLFNRSILNVFQN 125

Query: 113 ------IIDCDVIQADGGTR-TAAITGAWVALHDCLQH---MEDCSNKFQLSQVLKGH-- 160
                  +D  +++ +GG     A +    AL         + D        ++ +    
Sbjct: 126 RYAWILHVDVLILEVEGGNLFDVASSAVKAALFATQIPKVHIVDVDGGVPEIELSEDPDE 185

Query: 161 ---------VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATF 211
                       ++   +  + I D    E++         ++ SG I  ++   + +  
Sbjct: 186 CFRLDVSNAPVLVTLNRIGHFCIADASPNEEACSSAAMVIAVSPSGRISSLRKIGDGSFS 245

Query: 212 SQ 213
           S+
Sbjct: 246 SR 247


>gi|309266685|ref|XP_001481151.2| PREDICTED: exosome complex component rrp43-like [Mus musculus]
          Length = 418

 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
           R +GR  ++ R + +      +A GS LV+ GDT ++   
Sbjct: 99  RTNGRAPHEARPVHIHTSSLAHANGSALVRTGDTTVVCGV 138


>gi|258574161|ref|XP_002541262.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237901528|gb|EEP75929.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 282

 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 87/257 (33%), Gaps = 41/257 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR  +Q R ++LT       +     ++G   ++   + E   P   R +  G  T
Sbjct: 23  VRLDGRPLDQFRSLNLTFG-----D-----EYG---VIVRISAEVTAPRPERESD-GIFT 68

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------I 112
               +   +          +GRQ     ++ R + + +R  + +D  +L   +      +
Sbjct: 69  VSIELNDMAIPG-----FETGRQSDSETQLSRTLDKIVRRSNALDTESLCIAKGLSCWNV 123

Query: 113 IIDCDVIQADGGTRTAAITGAWVAL----------HDCLQHMEDCSNKFQLSQVLKGHVA 162
             D  ++ ADGG           AL           D    +     K  +   L     
Sbjct: 124 RADVHIVDADGGLVDICCLAIMAALLHFRLPESTVRDGKVTVYSAEEKVPVPLNLTKVPL 183

Query: 163 AISCGMLCG--YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
           +++  +       ++D    E++  +      +  +G I  +   A+       +  A  
Sbjct: 184 SVTFNLYDEGKTTLLDATSSEEAVSEGSLIIALDKTGEI-ALYSKADGTPADPLNMVACS 242

Query: 221 NLAKDRIADLIKL-QKD 236
             A  ++ +L  L Q+ 
Sbjct: 243 ATALAKVRELNALIQRK 259


>gi|50546251|ref|XP_500645.1| YALI0B08514p [Yarrowia lipolytica]
 gi|49646511|emb|CAG82887.1| YALI0B08514p [Yarrowia lipolytica]
          Length = 299

 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 71/230 (30%), Gaps = 38/230 (16%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR   + R + +T   S++  G   +  G T ++   + E   P   R    G    
Sbjct: 19  RLDGRSMEEQRPMEVTFG-SQF--GHVELTMGKTKVVVRISAEITKPNERR-PFEGIFVV 74

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSR------QII 113
              +   ++         +  Q  +   I +++ +A+R    +DL +L         +I 
Sbjct: 75  HTDIGSMASPI-----FENNHQSEQEIMISQVVEKAVRRSGALDLESLCIVAGKKCWEIR 129

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK------FQLSQVLKGHVAAISCG 167
            D   +  DGG   A        L+   +   D           +    +   V  +   
Sbjct: 130 ADVHYLDFDGGLVDATCAAVMAGLYHFKKPDVDVDGGAVTVCDMEERHPVALSVLHLPVS 189

Query: 168 MLCG---------------YPIVDLDYGEDSTIDVDANFVMTDSGHIVEV 202
           +  G                 ++D    E    + +    +  +  I ++
Sbjct: 190 VTYGLFELKNDETNEVEKVECVLDCTAIERQVQNAEITITINKNRDICQI 239


>gi|310798246|gb|EFQ33139.1| 3' exoribonuclease [Glomerella graminicola M1.001]
          Length = 291

 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 18/130 (13%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKF----------GDT---HLLTTATLEEKVPMWIR 52
           R  N +R + L   V+  A GS  ++             T    L+ T      +P    
Sbjct: 31  RPANGIRGLFLKTGVTPTASGSAYMEIEPPHSHVKSKSKTNGMKLICTVHGPRSLPRSAP 90

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
            + +  ++      P +T    +R +       R  +I   +  ALR V+         +
Sbjct: 91  FSPYLVLSTHVKYAPFAT---RQRRSYLRDSSER--DIGVHLDTALRGVIIADRWPKSGV 145

Query: 113 IIDCDVIQAD 122
            +   +++ D
Sbjct: 146 DVIVTIVEGD 155


>gi|118484971|gb|ABK94350.1| unknown [Populus trichocarpa]
          Length = 53

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 2  RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
          R  GR  +Q+R +S +  V   A GS     GDT +L   
Sbjct: 5  RDDGRSPSQLRPLSCSHNVLHRAHGSASWSQGDTKVLAAV 44


>gi|159118611|ref|XP_001709524.1| Exosome complex exonuclease, putative [Giardia lamblia ATCC 50803]
 gi|157437641|gb|EDO81850.1| Exosome complex exonuclease, putative [Giardia lamblia ATCC 50803]
          Length = 314

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 60/165 (36%), Gaps = 10/165 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   + R+ISL+      A GS LV+ G T +  ++ L       +R +    +T 
Sbjct: 16  RIDGRGIGETRDISLS---FFTARGSVLVEKGKTKVAASSKLAILSGKQLR-SGRITVTC 71

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
               LP      ++   ++          Q +    L  V+   A+    I    +V+Q 
Sbjct: 72  N---LPSELKETIEHVNLADLLNNTFASDQVVPKDTL--VIIPGAMY-FVIRCSVEVLQD 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC 166
           DGG R A I  A  +++              +    K  V   + 
Sbjct: 126 DGGLRDACIIAAGTSIYHMGIPNVQAYRGSSIDTCNKKQVEEFTT 170


>gi|87311732|ref|ZP_01093847.1| polyribonucleotide nucleotidyltransferase [Blastopirellula marina
           DSM 3645]
 gi|87285516|gb|EAQ77435.1| polyribonucleotide nucleotidyltransferase [Blastopirellula marina
           DSM 3645]
          Length = 385

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 24/164 (14%)

Query: 63  YGMLPRSTGN-RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
           Y     S G  R  R       G R      +  R+++ V+         I +  D++++
Sbjct: 25  YNFPSYSVGECRPIRG-----PGRREIGHGALAERSVKPVLPGPDEFPYTIRVISDILES 79

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----PIVDL 177
           +G +  A++  A + L                   +   VA IS G++        + D+
Sbjct: 80  NGSSSMASVCAATLGLMAAGV-------------PISNPVAGISVGLVKEGDDFILLTDI 126

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
              ED   D+D     T +G I  +Q   + A  S +   A L 
Sbjct: 127 LGDEDHFGDMDFKIAGTQNG-ITGIQLDLKIAGISAEIIKATLE 169


>gi|225559371|gb|EEH07654.1| exosome complex exonuclease RRP45 [Ajellomyces capsulatus G186AR]
          Length = 293

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 78/232 (33%), Gaps = 38/232 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           +RL  R  +Q+R ++++       +  G   ++ G T ++   + E   P   R    G 
Sbjct: 23  VRLDSRALDQLRPLTVSFG-----DEYGHVKLQLGKTSVVVRISAEVTKPRSEREND-GI 76

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSRQ----- 111
            T    +   ++         +GRQ     ++ R + R +R    +D  +L         
Sbjct: 77  FTVSVELNDMASPAY-----ETGRQSELESQLVRTLDRIIRRSNALDTESLCIAAGKNCW 131

Query: 112 -IIIDCDVIQADGGTRTAAITGAWVALHDC-LQHMEDCSNKFQLSQVLKGHVAAISCGML 169
            +  D  ++ +DGG   +        L    L        +  + +  +   + ++   L
Sbjct: 132 HVRADVHIVDSDGGLVDSCCLAIMTGLLHFRLPEAVVREGRVTVYRPEERVPSPLNLTKL 191

Query: 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
                            +   F M D G I+ +  +++    S+      L+
Sbjct: 192 P----------------LSTTFNMYDEGRIIVLDATSKEEAVSEGSLIIALD 227


>gi|71033863|ref|XP_766573.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68353530|gb|EAN34290.1| hypothetical protein TP01_1052 [Theileria parva]
          Length = 148

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 13/141 (9%)

Query: 7   QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGML 66
             N++R + +    S    GSC++  G+T       L  K+     +T++G  T E    
Sbjct: 13  SFNELRPLEIRMSTSSAFSGSCMISLGNTIAKCLVNLP-KISTKKASTEYGQFTLELT-S 70

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
                     E +              I       + L    S+ I     V   DGG  
Sbjct: 71  NYLYHTPKYLETLKS-----------HIIETFERHILLQNYPSQIIEAYIIVSNDDGGLL 119

Query: 127 TAAITGAWVALHDCLQHMEDC 147
            A I G  ++L DC   + D 
Sbjct: 120 PALIMGMCLSLIDCGIQVYDV 140


>gi|85113698|ref|XP_964565.1| hypothetical protein NCU03159 [Neurospora crassa OR74A]
 gi|28926352|gb|EAA35329.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 357

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 2  RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
          R +GR  ++ R + +      +A GS LV+ GDT ++   
Sbjct: 38 RTNGRAPHEARPVHIHTSSLAHANGSALVRTGDTTVVCGV 77


>gi|212535542|ref|XP_002147927.1| 3' exoribonuclease family protein [Penicillium marneffei ATCC
           18224]
 gi|210070326|gb|EEA24416.1| 3' exoribonuclease family protein [Penicillium marneffei ATCC
           18224]
          Length = 333

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 83/280 (29%), Gaps = 54/280 (19%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKF------GDT-----------HLLTTATLEEKVP 48
           R+  ++R+I L   +   A GS  ++        +T            +         +P
Sbjct: 38  RKPTELRKIFLKTGLIPSASGSSYLEIEPARRPTNTPKSLIAPATSLKIACAVHGPRPLP 97

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
                + +  +T      P +     +R+        R  ++   +  A+R  +      
Sbjct: 98  RSANYSPNLLLTTHVKYAPFA---HRRRKGHIRDASER--DLGVHLETAIRGAIIAERWP 152

Query: 109 SRQIIIDCDVIQA-------DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS--QVLKG 159
              + +   V++A       D    + A  G    L  C+          ++    ++ G
Sbjct: 153 KSALDVTITVLEAEDDRWWGDASGSSDASWGMMNVLAGCITAAAAAIADARIDCLDLVAG 212

Query: 160 HVAAISC-----------GMLCGYPIVDLDYGEDSTIDVDANF-VMTDSGHIVEVQG--- 204
            VAA+             G+      +D D  E   I        +     I E+     
Sbjct: 213 GVAALVADDQQEDKSTEGGVSPPRLFLDPDPSEHKNIVAACVVGYLPGRDEITEIWLKGD 272

Query: 205 SAERATFSQDH--------FFAMLNLAKDRIADLIKLQKD 236
           ++E A+ +               ++ A+   + L    K+
Sbjct: 273 TSEVASTTPGEKMSGHDVLIDGAIDAARAARSVLAAAVKE 312


>gi|164657360|ref|XP_001729806.1| hypothetical protein MGL_2792 [Malassezia globosa CBS 7966]
 gi|159103700|gb|EDP42592.1| hypothetical protein MGL_2792 [Malassezia globosa CBS 7966]
          Length = 313

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 90/273 (32%), Gaps = 34/273 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTKHGWI 59
           +R  GR  +Q+R +S+         GS LV+ G+ T +  + T     P  +     G++
Sbjct: 42  IREDGRTLDQLRSVSVATGTLSQPFGSALVRLGEGTLVTASVTARIAHPT-LERPNEGFL 100

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA--L-RSVVDLSA-LGSRQIIID 115
                +    +            Q   +  +Q  +  +  L RS + +   L    I +D
Sbjct: 101 IPSVDLSSLCSPLYNAGPPEEEGQV-LTHNLQMFLNNSGILPRSALCIEKGLAVWAIYVD 159

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDC---------SNKFQLSQVLKGHVAAISC 166
              + A+G    AA      ALHDC     D              +    L      ++ 
Sbjct: 160 VVCVSAEGSVLDAAALATVAALHDCQLPRIDRFVNSSQAIFDPDTKERLPLMNLPIFMTL 219

Query: 167 GMLCGYPIV-DLDYGEDSTID-------VDANFVMTD------SGHIVEVQG---SAERA 209
           GM     ++ DL   E+S          VD N  + D          ++V G   +    
Sbjct: 220 GMYESTYVLADLTAFEESLCTGSIQVGLVDVNNEVNDPDIAKYDVFWLKVLGPCTTKHPQ 279

Query: 210 TFSQDHFFA-MLNLAKDRIADLIKLQKDVISNE 241
               +      +  A+ R   L KL KD +   
Sbjct: 280 PLENEALIEWCIEKAQKRAQKLRKLIKDALQKR 312


>gi|281348318|gb|EFB23902.1| hypothetical protein PANDA_021543 [Ailuropoda melanoleuca]
          Length = 196

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 58/182 (31%), Gaps = 20/182 (10%)

Query: 77  EAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIIDCDV--IQADGGTRTA 128
              SG  G  +Q   + I   +    ++    L    G    ++ CD+  +  DG    A
Sbjct: 13  RFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLSWVLYCDIICLDYDGNILDA 72

Query: 129 AITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAISCGMLCGYP-IVDLD 178
                  AL +             + +   K +    ++ H  A S  +      IVD  
Sbjct: 73  CTFALLAALKNVQLPEVTINEETGLAEVHLKKKSYLNIRTHPVATSFAVFDDTLLIVDPT 132

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             E+         VM + G +  +         +       ++ A  R  ++ KL  +VI
Sbjct: 133 GEEEHLATGTLTVVMDEEGKLCCLHKPGIG--LTGAKLQDCMSRAVTRHKEVKKLMDEVI 190

Query: 239 SN 240
            +
Sbjct: 191 KS 192


>gi|195334771|ref|XP_002034050.1| GM21652 [Drosophila sechellia]
 gi|194126020|gb|EDW48063.1| GM21652 [Drosophila sechellia]
          Length = 467

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 13/142 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R  GR     R + L   +   A GS  ++  +T +L     E  VP  +   + G + 
Sbjct: 22  FRCDGRSRRDYRPMDLETGLVSNASGSARLRLANTDILVGVKTEIDVPNPL-TPEFGKLE 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL-----GSRQII-I 114
                   +T     R          +QE+   +  A  S +  +         +Q   +
Sbjct: 81  FFVDCSANATPEFEGRGG-----SDLAQELILSLKNAYESPLAFNYRTLCLIPGQQCWKL 135

Query: 115 DCDVI-QADGGTRTAAITGAWV 135
             D++ Q       A+I    +
Sbjct: 136 YIDILNQNSARLLDASIVDGVI 157


>gi|218186707|gb|EEC69134.1| hypothetical protein OsI_38058 [Oryza sativa Indica Group]
          Length = 334

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT 42
          +R  GR+  Q R IS+   V   A GS  V+ G T ++ T  
Sbjct: 20 LRTDGRRRLQFRAISVETGVIPQANGSARVRLGATEVIATVK 61



 Score = 37.8 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 15/127 (11%)

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA-------- 163
           + ID  V+ +DG    A      VAL D      + S      +  +  V+         
Sbjct: 188 LYIDGLVVSSDGNLLDALAGAIKVALSDTGIPKVNVSLSATTDEEPEVDVSDEEFLQFDT 247

Query: 164 ------ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
                 ++   +  + IVD    E+S +    +  +   G I  +      A       F
Sbjct: 248 SSVPVIVTLTKVGKHYIVDATSEEESQMSSAVSVSVNRHGQICGLTKRG-GAGLDPSVIF 306

Query: 218 AMLNLAK 224
            M+++AK
Sbjct: 307 DMISVAK 313


>gi|115388037|ref|XP_001211524.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114195608|gb|EAU37308.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 246

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 45/138 (32%), Gaps = 29/138 (21%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKF----------GDTHLL----------TTATLEE 45
           RQ N++R+I L   +   A GS  ++F           +   L           T    +
Sbjct: 37  RQPNELRKIFLKTGLIPSASGSAYLEFEPSPSLAAARSNPKSLIPPSSALKLACTVHGPK 96

Query: 46  KVPMWIRNTKHGWITAEYGMLPRSTGNRV--KREAVSGRQGGRSQEIQRMIGRALRSVVD 103
            +P     + +  +T      P +   R    R+A     G         +  ALR V+ 
Sbjct: 97  PLPRSATFSPNLVLTTHVKYAPFAARQRKGHIRDASERDLG-------VHLETALRGVIV 149

Query: 104 LSALGSRQIIIDCDVIQA 121
                   + I   +++A
Sbjct: 150 AERWPKSGLDITITILEA 167


>gi|70944649|ref|XP_742234.1| exoribonuclease PH [Plasmodium chabaudi chabaudi]
 gi|56521094|emb|CAH75418.1| exoribonuclease PH, putative [Plasmodium chabaudi chabaudi]
          Length = 281

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 75/230 (32%), Gaps = 40/230 (17%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R I + + +   A+GS  V   + +++    L   +P    +   G++ 
Sbjct: 15  IRVDGRTLLTYRTIEINKNILVSADGSSSVMNEENNVICGIKLSL-LPPDQNSIDEGFVN 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEI--QRMIGRALRSVVDLSALG------SRQI 112
            +         NR+K+E           EI    +    +++ +D   L          I
Sbjct: 74  LQIDCPASVASNRIKKEH---------LEIMTSIIYDLCIKNNIDKKKLCVLPSKFVWGI 124

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF--------------------- 151
            I+  V+   GG         +VAL+D    +     K                      
Sbjct: 125 DINVMVLNGGGGLLDIISIAIYVALNDMNIPVVKAPKKIDELNMFHNTKSKEYELEIVEN 184

Query: 152 -QLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIV 200
            +L          IS G +    I D+   E+  ++      +T SG  V
Sbjct: 185 EKLPFPCDNIPICISIGEINNKYIYDMSKIEEELVENVFVVAVTSSGKCV 234


>gi|323308949|gb|EGA62180.1| Ski6p [Saccharomyces cerevisiae FostersO]
          Length = 194

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 6/100 (6%)

Query: 35  THLLTTATLEEKVPMWIRNTK--HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQR 92
           T ++T      K P            +     +   S   R K    S +   R  EIQ 
Sbjct: 33  TKIITLVKGP-KEPRLKSQMDTSKALLNVSVNITKFSKFERSK---SSHKNERRVLEIQT 88

Query: 93  MIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITG 132
            + R     V L+      I I+  V++ DGG   + I G
Sbjct: 89  SLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIMGSLING 128


>gi|121716694|ref|XP_001275883.1| 3' exoribonuclease family protein [Aspergillus clavatus NRRL 1]
 gi|119404040|gb|EAW14457.1| 3' exoribonuclease family protein [Aspergillus clavatus NRRL 1]
          Length = 319

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 44/136 (32%), Gaps = 25/136 (18%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKF--------------------GDTHLLTTATLEE 45
           R+ N++R+I +   +   A GS  ++F                        L  T    +
Sbjct: 37  RKPNELRKIFIKTGLIPSASGSAYLEFEPSASLAAARSSPQSLIPPSSALKLACTVHGPK 96

Query: 46  KVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105
            +P     + +  +T      P +     +R+        R  ++   +  ALR  +   
Sbjct: 97  PLPRSATFSPNLVLTTHVKYAPFAA---RRRKGHIRDSSER--DLGVHLETALRGAIIAE 151

Query: 106 ALGSRQIIIDCDVIQA 121
                 + I   +++A
Sbjct: 152 RWPKSGLDITITILEA 167


>gi|242793419|ref|XP_002482157.1| 3' exoribonuclease family protein [Talaromyces stipitatus ATCC
           10500]
 gi|218718745|gb|EED18165.1| 3' exoribonuclease family protein [Talaromyces stipitatus ATCC
           10500]
          Length = 339

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 79/281 (28%), Gaps = 55/281 (19%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKF------GDT-----------HLLTTATLEEKVP 48
           R+  ++R+I L   +   A GS  ++        +T            +         +P
Sbjct: 38  RKPTELRKIFLKTGLIPSASGSSYLEIEPARRPTNTRESLIAPATSLKIACAVHGPRPLP 97

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
                + +  +T      P +     +R+        R  ++   +  A+R  +      
Sbjct: 98  RSANYSPNLLLTTHVKYAPFA---HRRRKGHIRDASER--DLGVHLETAIRGAIIAERWP 152

Query: 109 SRQIIIDCDVIQA-------DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS--QVLKG 159
              + +   V++A       D    + A  G    L  C+          ++    ++ G
Sbjct: 153 KSALDVTITVLEAEDDRWWGDASGSSDASWGMMNVLAGCITAAAAAIADARIDCLDLVAG 212

Query: 160 HVAAISCGMLCGY-----------PIVDLDYGEDSTIDVDANF-VMTDSGHIVEVQGSA- 206
            VAA+                    ++D D  E   I        +     I E+     
Sbjct: 213 GVAALVTEDEDETDSTNSGSRPPRLLLDPDPAEHQNIVAACVVGYLPSRDEITEIWLKGD 272

Query: 207 -----------ERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
                      ++    +      ++ A+   + L    ++
Sbjct: 273 TSEVASTTPGSKKVPGHEVLLDGAIDAARAARSVLAAAVRE 313


>gi|83314648|ref|XP_730452.1| 3' exoribonuclease domain 1 [Plasmodium yoelii yoelii str. 17XNL]
 gi|23490177|gb|EAA22017.1| 3' exoribonuclease family, domain 1, putative [Plasmodium yoelii
           yoelii]
          Length = 281

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 75/228 (32%), Gaps = 36/228 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R I + + +   A+GS  V   + +++    L   +P    +   G++ 
Sbjct: 15  IRVDGRTLLTYRTIEINKSILVSADGSSSVMNEENNVICGIKLSL-LPPEPHSIDEGFVN 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG------SRQIII 114
            +         NR+K+E +             +    +++ +D   L          I I
Sbjct: 74  LQIDCPASVASNRIKKEHLQ-------IMTSIIYDLCIKNNIDKKKLCVLPSKFVWGIDI 126

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF----------------------Q 152
           +  V+   GG         +VAL+D    +     K                       +
Sbjct: 127 NVMVLNGGGGLLDIISIAIYVALNDMNIPVVKAPKKIDELNMFHNTKSKEYELEIVENEK 186

Query: 153 LSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIV 200
           L    +     IS G +    I D+   E+  ++      +T SG  V
Sbjct: 187 LPFPCENIPICISIGEINNKYIYDMSKIEEELVENVFVVAVTSSGKCV 234


>gi|116193159|ref|XP_001222392.1| hypothetical protein CHGG_06297 [Chaetomium globosum CBS 148.51]
 gi|88182210|gb|EAQ89678.1| hypothetical protein CHGG_06297 [Chaetomium globosum CBS 148.51]
          Length = 210

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 2  RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
          R +GR   + R +        +A GS LV+ GDT +L     E    E+VP+W    +  
Sbjct: 38 RTNGRGTQETRPLHAKTSSLSHAHGSSLVRLGDTTVLCGVRGELLPVERVPLWDPEREMV 97

Query: 58 WI 59
            
Sbjct: 98 VC 99


>gi|268562221|ref|XP_002638538.1| C. briggsae CBR-EXOS-7 protein [Caenorhabditis briggsae]
          Length = 300

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 79/284 (27%), Gaps = 58/284 (20%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH-LLTTATLEEKVPMWIRNTKHGWI 59
           +R  GR     R I L R V     GSC V+ G T  +L    LE +        K    
Sbjct: 21  IRNDGRTCADFRTIVLERGVLSGTNGSCRVQLGQTTDVLAGIKLELE-SFDPAAEKEAKQ 79

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD---------LSALGSR 110
              +  +  S     +     G Q G  +EI      A    +D         L+     
Sbjct: 80  PMSFH-VDFSANASSQFAGKGGDQYG--EEISAAFQVAFSRSLDILPNLSKTLLAEGYRW 136

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHD------------------CLQHMEDCSNKFQ 152
           +I +D  V+Q  G    A       AL D                   L+      N   
Sbjct: 137 KINVDLSVLQWAGSVPDACSLAIIGALSDLEVPEVEVAPDDGGKVSIVLKRPRTGGNMRD 196

Query: 153 LSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI---------------DVDANFVMTDSG 197
               +      ++   +    +VD    E+  I               D D   +    G
Sbjct: 197 EEVPVAICPMLLTVSKIGSANLVDCSPEEECCIRSQLLIGVAKNLNVDDYDITCIKQHGG 256

Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
            ++E+           +    M  LA      L +  +  +  E
Sbjct: 257 GLLEM-----------ESIQDMTELASKTAGGLYQAIEKRLKTE 289


>gi|238567177|ref|XP_002386186.1| hypothetical protein MPER_15667 [Moniliophthora perniciosa FA553]
 gi|215437404|gb|EEB87116.1| hypothetical protein MPER_15667 [Moniliophthora perniciosa FA553]
          Length = 80

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 16/40 (40%)

Query: 5  GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
          GR+   +R I L   + + A GS  ++   T +       
Sbjct: 41 GRKPADIRPIFLQPGLIRQANGSAYIETEKTKVACAVYGP 80


>gi|171683893|ref|XP_001906888.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941907|emb|CAP67559.1| unnamed protein product [Podospora anserina S mat+]
          Length = 358

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 2  RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
          R +GR  +Q R I +       A GS LV+ GDT ++     E
Sbjct: 46 RNNGRAPHQSRPIQINTSSLSQAHGSSLVRTGDTTVICGVRGE 88


>gi|213423108|ref|ZP_03356125.1| hypothetical protein Salmonentericaenterica_37027 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 34

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
            D N VMT+ G I+EVQG+AE   FS +    +L
Sbjct: 1   TDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLL 34


>gi|73969676|ref|XP_865517.1| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1
           isoform 3 [Canis familiaris]
          Length = 367

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 17/120 (14%)

Query: 91  QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAWVALHDCLQHMEDCS 148
            R+I R++R +         Q++  C+++  DG       AI GA VAL           
Sbjct: 51  SRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNEPDVLAINGASVALS---------- 98

Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
                     G + A+  GM+ G  +V+    E S+  ++          IV ++ SAE 
Sbjct: 99  ---LSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQIVMMEASAEN 155



 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
           R  GR    +R I+    + K   GS L + G T +  T T +
Sbjct: 278 RCDGRDLTSLRNINCEVDLFKTLHGSALFQRGQTQVFCTVTFD 320


>gi|116195962|ref|XP_001223793.1| hypothetical protein CHGG_04579 [Chaetomium globosum CBS 148.51]
 gi|88180492|gb|EAQ87960.1| hypothetical protein CHGG_04579 [Chaetomium globosum CBS 148.51]
          Length = 286

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 15/126 (11%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDT---------HLLTTATLEEKVPMWIRNTKH 56
           R  N  R++ L   V+  A GS  ++  +T          L  +      +P     + H
Sbjct: 35  RPPNTTRKMYLKTGVTPSASGSAYLEI-ETSATPGVSGLKLSCSVHGPRSLPRSAPFSPH 93

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
             ++      P +T  R            R   I   +  ALR  +         + I  
Sbjct: 94  IVLSTHVKYAPFATKQRR---GYLRDPSERDLGI--HLEAALRGAIIADRWPKSGVDIII 148

Query: 117 DVIQAD 122
            +++ D
Sbjct: 149 SIVEGD 154


>gi|85108995|ref|XP_962696.1| hypothetical protein NCU08026 [Neurospora crassa OR74A]
 gi|28924307|gb|EAA33460.1| conserved hypothetical protein [Neurospora crassa OR74A]
 gi|39979134|emb|CAE85508.1| conserved hypothetical protein [Neurospora crassa]
          Length = 286

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 57/190 (30%), Gaps = 32/190 (16%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKF---GDT----HLLTTATLEEKVPMWIRNTKHGW 58
           R  N +R++ L   V+  A GS  ++    G+      L  +      +P     + H  
Sbjct: 36  RPANVIRKMYLKTGVTPSASGSAYLEIESSGNGGSGLKLSCSVHGPRALPRSTPFSPHII 95

Query: 59  ITAEYGMLPRSTGNRV--KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
           ++      P +T  R    R+ +    G         +  ALR  +         + I  
Sbjct: 96  LSTHVKFAPFATKQRRGYIRDPIERDLGT-------HLETALRGSIIADRWPKSGVDIII 148

Query: 117 DVIQ---------ADG-------GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160
            +++         A G          +  IT A  AL D      D       + V    
Sbjct: 149 SIVEGEQDRETSKAQGIEAWDTMNALSGCITVASAALADAGIDCVDTVAGGVAALVQDAG 208

Query: 161 VAAISCGMLC 170
             A    ++ 
Sbjct: 209 NDAAPSIVVD 218


>gi|296233893|ref|XP_002762219.1| PREDICTED: exosome complex exonuclease RRP46-like [Callithrix
           jacchus]
          Length = 179

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 45/147 (30%), Gaps = 27/147 (18%)

Query: 33  GDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQR 92
           GDT +L       +V                 +  ++T   + R  + G  G   +  +R
Sbjct: 24  GDTSVLAGVYGPAEVK------------VSKEIFNKATLEVILRPKI-GLPGVAEKSRER 70

Query: 93  MIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ 152
           +I     +VV  +      I +   V+   G      +  A +AL D    M        
Sbjct: 71  LIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRAL----- 125

Query: 153 LSQVLKGHVAAISCGM-LCGYPIVDLD 178
                      ++C +   G  ++D  
Sbjct: 126 --------FCGVTCALDSDGTLVLDPT 144


>gi|322703882|gb|EFY95484.1| 3' exoribonuclease family protein [Metarhizium anisopliae ARSEF
          23]
          Length = 339

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 2  RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
          R +GR   ++R  ++      +  GS LV+ GDT ++     E
Sbjct: 36 RSNGRAPEEVRPTTVNLSSLSHPHGSSLVRMGDTTVICGVRGE 78


>gi|328767734|gb|EGF77783.1| hypothetical protein BATDEDRAFT_91450 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 319

 Score = 56.3 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 82/296 (27%), Gaps = 62/296 (20%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVK--FGDTHLLTTATL-----EEKVPM---- 49
           +R  GR     R + L   +   A GSC V    G T +L    +     E +V      
Sbjct: 18  IRADGRGSFDSRPVFLETGMITQASGSCRVTIDHG-TDVLAGVKVQVADVEGRVEQYTGD 76

Query: 50  ----------------------WIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRS 87
                                 +      G I       P ++     R           
Sbjct: 77  IVEQTGTEVADDLNTSLADGNGFSNRGNVGRIVCSVECSPAASIILDSRAIED-----MC 131

Query: 88  QEIQRMIGRALRS---VVDLSAL---GSRQ---IIIDCDVIQADGGTRTAAITGAWVALH 138
            E  +++ R L      +DL  L          + +D  ++   G      +     ALH
Sbjct: 132 NEYTQVLNRTLNGPHGGIDLQKLCIIPGSTCWVVSVDVLIMDYGGNVLDTVLMAVRGALH 191

Query: 139 DCLQHMEDCSNKF---------QLSQVLKGH---VAAISCGMLCGYPIVDLDYGEDSTID 186
           +                       ++VL G      A++   +    IVD    ED    
Sbjct: 192 NTRLPKTKVEETDGHFEFDIADDETEVLCGRENIPVALTLSRIGSGHIVDASPLEDMCSS 251

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD-RIADLIKLQKDVISNE 241
                 +  SG I  VQ +  + +        M+  A       L+ L   ++S E
Sbjct: 252 SKITVFVNASGCICGVQKTG-KGSLEPSTLIDMIETASRLGSESLVSLDSILLSEE 306


>gi|218185968|gb|EEC68395.1| hypothetical protein OsI_36554 [Oryza sativa Indica Group]
          Length = 485

 Score = 56.3 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL         +   G  T 
Sbjct: 288 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTD 347

Query: 61  ---AEYGMLPRSTGNRVKREAVSGR 82
                Y   P S G    RE    +
Sbjct: 348 SFLFHYNFPPYSVGETGMREIDPKK 372


>gi|148703132|gb|EDL35079.1| exosome component 9, isoform CRA_b [Mus musculus]
          Length = 353

 Score = 56.3 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 68/184 (36%), Gaps = 21/184 (11%)

Query: 78  AVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QIIIDCDVIQADGGTRTAA 129
              GRQ     ++ R++ R LR    +D  +L    G +  QI +D  ++  DG    AA
Sbjct: 6   FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAA 65

Query: 130 ITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAAISCGML--CGYPIVDL 177
              A VAL    +           +     +  +   +      +S        Y +VD 
Sbjct: 66  SIAAIVALCHFRRPDVSVQGEEVTLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDP 125

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +  E+  +D      M     I  +Q S       +D  F    +A  ++A++ +L +  
Sbjct: 126 NEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVFRCSKIAGVKVAEITELIQKA 184

Query: 238 ISNE 241
           + N+
Sbjct: 185 LEND 188


>gi|73969674|ref|XP_865499.1| PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1
           isoform 2 [Canis familiaris]
          Length = 209

 Score = 56.3 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 17/120 (14%)

Query: 91  QRMIGRALRSVVDLSALGSRQIIIDCDVIQADG--GTRTAAITGAWVALHDCLQHMEDCS 148
            R+I R++R +         Q++  C+++  DG       AI GA VAL           
Sbjct: 51  SRVIDRSIRPLFPAGYFYDTQVL--CNLLAVDGVNEPDVLAINGASVALS---------- 98

Query: 149 NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAER 208
                     G + A+  GM+ G  +V+    E S+  ++          IV ++ SAE 
Sbjct: 99  ---LSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQIVMMEASAEN 155


>gi|68076189|ref|XP_680014.1| exoribonuclease PH [Plasmodium berghei strain ANKA]
 gi|56500878|emb|CAH99972.1| exoribonuclease PH, putative [Plasmodium berghei]
          Length = 281

 Score = 56.3 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 75/228 (32%), Gaps = 36/228 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R I + + +   A+GS  V   + +++    L   +P    +   G++ 
Sbjct: 15  IRVDGRTLLTYRTIEINKSILVSADGSSSVMNEENNVICGIKLSL-LPPEQHSIDEGFVN 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG------SRQIII 114
            +         NR+K+E +             +    +++ +D   L          I I
Sbjct: 74  LQIDCPASVASNRIKKEHLQ-------IMTSIIYDLCIKNNIDKKKLCVLPSKFVWGIDI 126

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF----------------------Q 152
           +  V+   GG         +VAL+D    +     K                       +
Sbjct: 127 NVMVLNGGGGLLDIISIAIYVALNDMNIPVVKAPKKIDELNMFHNTKSKEYELEIVENEK 186

Query: 153 LSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIV 200
           L    +     IS G +    I D+   E+  ++      +T SG  V
Sbjct: 187 LPFPCENIPICISIGEINNKYIYDMSKIEEELVENVFVVAVTSSGKCV 234


>gi|149048738|gb|EDM01279.1| exosome component 9, isoform CRA_a [Rattus norvegicus]
          Length = 353

 Score = 56.3 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 68/184 (36%), Gaps = 21/184 (11%)

Query: 78  AVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QIIIDCDVIQADGGTRTAA 129
              GRQ     ++ R++ R LR    +D  +L    G +  QI +D  ++  DG    AA
Sbjct: 6   FEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAA 65

Query: 130 ITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAAISCGML--CGYPIVDL 177
              A VAL    +           +     +  +   +      +S        Y +VD 
Sbjct: 66  SIAAIVALCHFRRPDVSVQGEEVTLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDP 125

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +  E+  +D      M     I  +Q S       +D  F    +A  ++A++ +L +  
Sbjct: 126 NEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVFRCSKIAGVKVAEITELIQKA 184

Query: 238 ISNE 241
           + N+
Sbjct: 185 LEND 188


>gi|256079241|ref|XP_002575897.1| Exosome complex exonuclease RRP43 [Schistosoma mansoni]
 gi|238661151|emb|CAZ32132.1| Exosome complex exonuclease RRP43, putative [Schistosoma mansoni]
          Length = 311

 Score = 56.3 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 54/150 (36%), Gaps = 17/150 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+  R   +  +I++   V     GS LVK G T ++       KV +   +   G +T
Sbjct: 21  IRIEDRDCLEFADINVAAGVLTSCHGSALVKVGKTQVIAGV----KVKVIPESGNSGSVT 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR----ALRSVVD---------LSAL 107
                                     S  IQR++      ++ S ++         L+ +
Sbjct: 77  CNVEFAGLCHRGSRLNTPQPKCAQWLSSTIQRLLNNFAFPSIESQLNIFSINDPNTLTPV 136

Query: 108 GSRQIIIDCDVIQADGGTRTAAITGAWVAL 137
            S  + +D  ++  DG    A +  A V+L
Sbjct: 137 ASYTLKLDVFILHDDGCLLDACVPAALVSL 166


>gi|50290581|ref|XP_447723.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527034|emb|CAG60670.1| unnamed protein product [Candida glabrata]
          Length = 303

 Score = 56.3 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 80/273 (29%), Gaps = 45/273 (16%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR+ +Q R++ +         G   V+ G T +    + +   P   R    G    
Sbjct: 24  RLDGRRLDQFRDVQIEFG---KEYGDVTVRMGKTLVQCRISCQITEPYEDR-PFEGLFVI 79

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSR------QII 113
              + P +        +     G       R+I +A+R    +D+  L          + 
Sbjct: 80  STEISPMAGPQFENGNST----GEDEVLCARIIEKAVRRSGALDVEGLCIVAGSKCWAVR 135

Query: 114 IDCDVIQADGGTRTAAITGAWVALH------------DCLQHMEDCSNKFQLSQVLKGHV 161
            D   +  DGG   A+      AL             D + +  D      L  +     
Sbjct: 136 ADVHYLNCDGGFIDASCIAVMAALSHFRKPDISVHGEDVVVYPVDEREPVPLGILHIPIC 195

Query: 162 AAISCGMLCGY------------PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERA 209
              S                    I+D    E+   D      +  +  +V+V   ++  
Sbjct: 196 VTFSFFNPQDTEENIKGDSNAEISIIDATTKEELLRDGVLTVTLNKNREVVQV---SKAG 252

Query: 210 TFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
               D    ++        ++ +   D+I  EV
Sbjct: 253 GLPMDAL-QLMQCCHKA-YEITEQLTDMILKEV 283


>gi|4972074|emb|CAB43881.1| putative protein [Arabidopsis thaliana]
 gi|7269603|emb|CAB81399.1| putative protein [Arabidopsis thaliana]
          Length = 244

 Score = 55.9 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 57/190 (30%), Gaps = 54/190 (28%)

Query: 89  EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG------------------------- 123
           E   M+ +AL  V+ +       + +   V+++ G                         
Sbjct: 64  EYSSMLHKALEGVIMMETFPKTTVDVFALVLESGGKCDCLLVRLDIRGVDYGSNLLDCCL 123

Query: 124 ------------GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
                       G  +  I+ A +AL D    M D              + A+S   +  
Sbjct: 124 AFSDFLQWYCIAGDLSVLISCASLALADAGIMMYDL-------------ITAVSVSCIGK 170

Query: 172 YPIVDLDYGEDSTIDVD-ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
             ++D    E+   D       M     I ++  + E   ++  +    + L  D  + L
Sbjct: 171 SLMIDPVTEEEGCEDGSFMMTCMPSRYEITQLTITGE---WTTPNINEAMQLCLDASSKL 227

Query: 231 IKLQKDVISN 240
            ++ +D +  
Sbjct: 228 GEIMRDCLKQ 237


>gi|213410258|ref|XP_002175899.1| exosome subunit Rrp45 [Schizosaccharomyces japonicus yFS275]
 gi|212003946|gb|EEB09606.1| exosome subunit Rrp45 [Schizosaccharomyces japonicus yFS275]
          Length = 291

 Score = 55.9 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 83/264 (31%), Gaps = 34/264 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAE--GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
           +RL GR+ +  R+      V K+ +  G   V  G+T +L   T +   P +      G 
Sbjct: 23  VRLDGREMHAFRQ-----PVIKFGDKFGEVDVSLGETRVLCHITAQIAKP-YPDKPFDGI 76

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGS------R 110
            T    + P +  +       +GR   +   I R+I  ++R    +D  +L         
Sbjct: 77  FTIHTELTPMAHPS-----LEAGRLSDQEVLISRLIETSVRRSRALDTESLCILSGQKCW 131

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS-----------QVLKG 159
            +      +  DG    AA      AL    +     + +  +             VL  
Sbjct: 132 SVRATVHFVNHDGNMVDAACLAVVAALCHYRRPDVTVTGEEVVVHSPEERVPVPLSVLHM 191

Query: 160 HVAAISCGMLCGYP-IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218
            +         G   + D    E+          +  +  I +   +       Q    +
Sbjct: 192 PICTTFFFFHDGSISVTDATAEEEELSTGTMTITLNKNREICQFFKAG-GVPIDQTKIIS 250

Query: 219 MLNLAKDRIADLIKLQKDVISNEV 242
             + A     ++ +  K V++ ++
Sbjct: 251 CAHAAFKNTQEICEQLKQVLAQDL 274


>gi|189205667|ref|XP_001939168.1| 3' exoribonuclease family protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187975261|gb|EDU41887.1| 3' exoribonuclease family protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 327

 Score = 55.9 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 79/274 (28%), Gaps = 50/274 (18%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGD------------T---HLLTTATLEEKVPMW 50
           R  N++R I L   +   A GS  ++               T    +  +    + +P  
Sbjct: 41  RDPNELRRIFLQTSIIPSASGSAYLEIPSSSPSATSSLIPPTSSLKITASIQGPKPLPRS 100

Query: 51  IRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110
              +    +T      P +T  R +R  +        +++   +  ALR V+        
Sbjct: 101 APFSPSLLLTTTVKFAPFAT--RHRRGYIR---DSTERDLGVHLETALRGVIIGERWPKS 155

Query: 111 QIIIDCDVI--QADG-------------------GTRTAAITGAWVALHDCLQHMEDCSN 149
            + +   ++    DG                         IT A  A+ D      D   
Sbjct: 156 GVEVVVTILEGDEDGWWGDSGSEGSASGSGWGLLNVLAGCITVASAAITDAGIDCVDMVC 215

Query: 150 KFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF-VMTDSGHIVEVQGSAER 208
               + + +   +    G+     I+D    E   +        +     I E+    + 
Sbjct: 216 GGVAA-ITRNPASKQEQGLAR---ILDPCPAEHKDVVAACVVGYLASRDEITEIWMKGDV 271

Query: 209 ATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            +       A++  A       + + KDV+   +
Sbjct: 272 GSNP----DALIEGAIHAAVGSLAVVKDVLLEAL 301


>gi|154301511|ref|XP_001551168.1| hypothetical protein BC1G_10425 [Botryotinia fuckeliana B05.10]
 gi|150856165|gb|EDN31357.1| hypothetical protein BC1G_10425 [Botryotinia fuckeliana B05.10]
          Length = 244

 Score = 55.9 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 65/218 (29%), Gaps = 29/218 (13%)

Query: 37  LLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR 96
           +L   T E   P   R    G  T    + P ++         + R   +   + R++ +
Sbjct: 6   VLVNITAEVTSPFPDRLFD-GIFTITTELSPMASPA-----FETNRPTEQEVLLSRLLEK 59

Query: 97  ALR--SVVDLSALGS------RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQH----- 143
            LR  + +D  +L          +  D  ++  DG    A+      AL    +      
Sbjct: 60  TLRRSAALDTESLCLIAGQKCWSVRADVHILSHDGNLIDASCIAIIAALQHFRKPDTSTE 119

Query: 144 -----MEDCSNKFQLSQVLKGHVAAISCGMLCG----YPIVDLDYGEDSTIDVDANFVMT 194
                +   + +  +   L      ++            +VD +  E+   +      M 
Sbjct: 120 GETVTVYTLAEREPVPLSLLHFPLCVTFSFYGKGQEQTRLVDTNLMEEQLREGSCTISMN 179

Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
             G + ++                  N+A +++ D+  
Sbjct: 180 RHGEVCQIAKLG-GIAVDAVELLQCTNIALEKVKDISA 216


>gi|145251293|ref|XP_001397160.1| 3' exoribonuclease family protein [Aspergillus niger CBS 513.88]
 gi|134082691|emb|CAK42584.1| unnamed protein product [Aspergillus niger]
          Length = 324

 Score = 55.9 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 45/138 (32%), Gaps = 29/138 (21%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGDT--------------------HLLTTATLEE 45
           RQ +++R+I L   +   A GS  ++F  +                     L  T    +
Sbjct: 38  RQPDELRKIFLKTGLIPSASGSSYLEFEPSASLAAARSNPQSLIPPSSALKLACTVHGPK 97

Query: 46  KVPMWIRNTKHGWITAEYGMLPRSTGNRV--KREAVSGRQGGRSQEIQRMIGRALRSVVD 103
            +P     + +  +T      P +   R    R+A     G         +  ALR V+ 
Sbjct: 98  PLPRSASFSPNVVLTTHVKYAPFAARQRKGHIRDASERDLG-------VHLETALRGVIV 150

Query: 104 LSALGSRQIIIDCDVIQA 121
                   + I   +++A
Sbjct: 151 AERWPKSGLDITITILEA 168


>gi|308486185|ref|XP_003105290.1| CRE-EXOS-7 protein [Caenorhabditis remanei]
 gi|308256798|gb|EFP00751.1| CRE-EXOS-7 protein [Caenorhabditis remanei]
          Length = 314

 Score = 55.9 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 59/176 (33%), Gaps = 24/176 (13%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH-LLTTATLE--------EKVPMWI 51
           +R  GR     R + L R V     GSC V+ G T  +L    LE        EK P   
Sbjct: 21  IRNDGRACADFRPMILERGVLSGTNGSCRVQLGQTTDVLAGIKLELEAYDPIAEKQPKQP 80

Query: 52  RNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL---- 107
            +    +            G++   E  +          Q    R+L  + +LS      
Sbjct: 81  MSFHVDFSANASSQFAGKGGDQYGEELSAA--------FQVAYSRSLDIIPNLSKTQLAA 132

Query: 108 -GSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS--NKFQLSQVLKGH 160
               +I +D  V+Q  G    A       AL D      D +  +  ++S VLK  
Sbjct: 133 GYRWKIHVDISVLQWAGSVPDACSLAIIGALSDLEIPEVDVTPDDGGKVSIVLKRP 188


>gi|145349570|ref|XP_001419203.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579434|gb|ABO97496.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 257

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 77/248 (31%), Gaps = 28/248 (11%)

Query: 16  LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           +        EG C+V+ G T    + +   + P     +  G +  +      +     +
Sbjct: 1   IKLGPL---EGVCVVRLGRTIACASTSAMLERPQSAGASSEGVLRVDCEFSSGACEGFAR 57

Query: 76  REAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSRQIIIDCDV--IQADGGTRT 127
               +     R++++  ++ R L+    VD+ +L    G R  ++ C V  +  DG    
Sbjct: 58  EGRANRETRQRAKDLGALLERGLKDARAVDVESLCVLAGKRVWVVTCAVTILAHDGNLAG 117

Query: 128 AAITGAWVALHD------CLQHM------EDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
           AA   A  +L         +              +  +   +     A +       P  
Sbjct: 118 AASLAACGSLMTYRRPECAVDPNTGTVTVHSADAREAIPLNMHHFPIASTYCFFDEVPGL 177

Query: 174 -IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            + D    E+ T D     V+     +  +  +        +     +  A     +  +
Sbjct: 178 AVADPTLEEEVTADASIVVVVNTHDEVCALSKTGNGVP--SEDLKRCVRNASRTAREWTE 235

Query: 233 LQKDVISN 240
           L K+  ++
Sbjct: 236 LLKEAAAD 243


>gi|330930200|ref|XP_003302936.1| hypothetical protein PTT_14933 [Pyrenophora teres f. teres 0-1]
 gi|311321403|gb|EFQ88972.1| hypothetical protein PTT_14933 [Pyrenophora teres f. teres 0-1]
          Length = 327

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 82/279 (29%), Gaps = 60/279 (21%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKFGD------------T---HLLTTATLEEKVPMW 50
           R  N++R I L   +   A GS  ++               T    +  +    + +P  
Sbjct: 41  RGPNELRRIFLQTSIIPSASGSAYLEIPSSSPCTTSSLIPPTSSLKITASIQGPKPLPRS 100

Query: 51  IRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR 110
              +    +T      P +T  R +R  +        +++   +  ALR V+        
Sbjct: 101 APFSPSLLLTTTVKFAPFAT--RHRRGYIR---DSTERDLGVHLETALRGVIIGERWPKS 155

Query: 111 QIIIDCDVI--QADG-------------------GTRTAAITGAWVALHDCLQHMEDCSN 149
            + +   ++    DG                         IT A  A+ D      D   
Sbjct: 156 GVEVVVTILEGDEDGWWGDSGSEGSASGSGWGLLNVLAGCITVASAAMTDAGIDCVDM-- 213

Query: 150 KFQLSQVLKGHVAAISC--GMLCGYP---IVDLDYGEDSTIDVDANF-VMTDSGHIVEVQ 203
                  + G VAAI+   G   G     I+D    E   +        +     I E+ 
Sbjct: 214 -------VCGGVAAITRNPGSKQGQGLARILDPCPAEHKDVVAACVVGYLGSRDEITEIW 266

Query: 204 GSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
              +  +       A++  A       + + KDV+   +
Sbjct: 267 MKGDVGSDP----DALIEGAIHAAVGSLAVVKDVLLEAL 301


>gi|289617251|emb|CBI56018.1| unnamed protein product [Sordaria macrospora]
          Length = 286

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 57/190 (30%), Gaps = 32/190 (16%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKF---GDT----HLLTTATLEEKVPMWIRNTKHGW 58
           R  N +R++ L   V+  A GS  ++    G+      L  +      +P     + H  
Sbjct: 36  RPANVIRKMYLKTGVTPSASGSAYLEIESSGNGGSGLKLSCSVHGPRALPRSTPFSPHII 95

Query: 59  ITAEYGMLPRSTGNRV--KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC 116
           ++      P +T  R    R+ +    G         +  ALR  +         + I  
Sbjct: 96  LSTHVKFAPFATKQRRGYIRDPIERDLGT-------HLEAALRGSIIADRWPKSGVDIII 148

Query: 117 DVIQ---------ADG-------GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160
            +++         A G          +  IT A  AL D      D       + V    
Sbjct: 149 SIVEGEQDRETSKAQGIEAWDTMNALSGCITVASAALADAGIDCVDTVAGGVAALVQDAC 208

Query: 161 VAAISCGMLC 170
             A    ++ 
Sbjct: 209 DDAAPSIVVD 218


>gi|156049529|ref|XP_001590731.1| hypothetical protein SS1G_08471 [Sclerotinia sclerotiorum 1980]
 gi|154692870|gb|EDN92608.1| hypothetical protein SS1G_08471 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 317

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 54/181 (29%), Gaps = 45/181 (24%)

Query: 2   RLS-GRQENQMREISLTRRVSKYAEGSCLVKF-----------G----DT---HLLTTAT 42
           R S  RQ N +R+I L   V+  A GS  ++            G     T    L  T  
Sbjct: 33  RPSRNRQPNVLRKIFLKTGVTPSASGSAYLELEPSQPSNQSAPGLASLSTSGLKLTCTVH 92

Query: 43  LEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV 102
               +      + H  +       P ++    +R         R  ++   +  ALR V+
Sbjct: 93  GPRPLSKSAAFSPHMILQTHVKYAPFAS---RRRRGYIRDTSER--DLGVHLETALRGVI 147

Query: 103 DLSALGSRQIIIDCDVIQ-----------------ADG----GTRTAAITGAWVALHDCL 141
                    + I+  +++                 A G       +  IT A  A+ D  
Sbjct: 148 IGDRWPKSGVEINITILEGEEDHWWGDDKSFGSSTAGGWGMMSVLSGCITVASAAIADAG 207

Query: 142 Q 142
            
Sbjct: 208 I 208


>gi|164660754|ref|XP_001731500.1| hypothetical protein MGL_1683 [Malassezia globosa CBS 7966]
 gi|159105400|gb|EDP44286.1| hypothetical protein MGL_1683 [Malassezia globosa CBS 7966]
          Length = 330

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 93/302 (30%), Gaps = 67/302 (22%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWI 59
           +R  GR+  Q R +      S+   G C V+ GDT  +  A++E  +          G +
Sbjct: 26  LRPDGRRFFQSRPV--QVNFSER-LGWCQVQLGDT--IAVASVEAALSEPRRDRPYEGLV 80

Query: 60  TAEYGMLPRSTGNR-VKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ----- 111
                + P +           +     R+   +R++ RA+R    VD  AL         
Sbjct: 81  QIHADISPMAGVEYDSGGMFGASESRERAALFERLLERAVRNTEAVDREALCVIAGKVVW 140

Query: 112 -IIIDCDVIQADGGTRTAAITGAWVALH----------DCLQHMEDCSNKFQLSQVLKGH 160
            + +   ++   G +  AA+  + +AL           + +  +     +  +       
Sbjct: 141 CVSLTVHLLADQGASVDAAVLASMLALRQYRRPEVTVENGVVTVHSSDERVPVPLACHHV 200

Query: 161 VAAISCGM--------------------------------LCGYP---------IVDLDY 179
              +S  +                                +   P         ++D   
Sbjct: 201 PLCVSYAVFLLEPKTEQEHALLQAQSLAVTARQQQQLAMQVDDAPANAIAVPVTLLDPSL 260

Query: 180 GEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
            E +       FVM     I  +  +   A+       A+L+ A  R+ +L  L +  ++
Sbjct: 261 LEKTLAHSTITFVMNAQREICVLDKAG-GASLPFQTILALLDSAAARVQELSTLLESKLA 319

Query: 240 NE 241
            +
Sbjct: 320 ED 321


>gi|308807186|ref|XP_003080904.1| putative polymyositis/scleroderma autoantigen (ISS) [Ostreococcus
           tauri]
 gi|116059365|emb|CAL55072.1| putative polymyositis/scleroderma autoantigen (ISS) [Ostreococcus
           tauri]
          Length = 869

 Score = 55.1 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 78/241 (32%), Gaps = 34/241 (14%)

Query: 1   MRLSGRQENQMR--------EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR 52
            R+ GR   ++R        +I ++       +G C+V+ G T    T T + + P    
Sbjct: 443 FRIDGRAPGEVRGGGDTFENQIEISFGPL---DGVCVVRLGHTLACATTTGQLERPASAG 499

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSAL--- 107
            +  G +  +      +     +    S     RS+++  ++ R L+    VD+ +L   
Sbjct: 500 ASAEGSLRVDVEFSSGACTGFARDGRASRETRQRSRDLGMLLERGLKDGRAVDVESLCVL 559

Query: 108 -GSRQ--IIIDCDVIQADGGTRTAAITGAWVALH------------DCLQHMEDCSNKFQ 152
            G R   I     ++  DG     A   A  +L               +  +     +  
Sbjct: 560 AGKRTWAITCSVTILAHDGNLAGVASLAACGSLMTYRRPECSVDPNSGIVTVHSVDAREA 619

Query: 153 LSQVLKGHVAAISCGMLCGYP---IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERA 209
           ++  +     A +       P   + D    E+ T D     V+     +  V  S    
Sbjct: 620 IALNMHHFPIASTYCFFDEAPGLAVADPTLEEEITADGSVVCVVNSLEEVCAVSTSGNGV 679

Query: 210 T 210
           +
Sbjct: 680 S 680


>gi|207109310|ref|ZP_03243472.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 204

 Score = 55.1 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 56/143 (39%), Gaps = 13/143 (9%)

Query: 95  GRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS 154
            RAL + +       + I +  ++++++G +  A++    +AL+     + D      + 
Sbjct: 3   KRALETSIKNK---EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMG 59

Query: 155 QVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
            V +G   AI         + D+   ED+  D+D        G I  +Q   + +    +
Sbjct: 60  MVSEGQDHAI---------LSDISGLEDAEGDMDFKIAGNLEG-ITAMQMDTKMSGIQLE 109

Query: 215 HFFAMLNLAKDRIADLIKLQKDV 237
             +  L  AK     ++K+  + 
Sbjct: 110 ILYQALLQAKKAREHILKIMHEA 132


>gi|148703326|gb|EDL35273.1| exosome component 8, isoform CRA_b [Mus musculus]
          Length = 212

 Score = 55.1 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 66/204 (32%), Gaps = 22/204 (10%)

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQE-IQRMIGRALRSVVDLSAL----G 108
              G++     + P  +     R    G +   + + I  ++  +   V+    L    G
Sbjct: 10  PDRGYVVPNVDLPPLCSS--RFRTGPPGEEAQVTSQFIADVVDNS--QVIKKEDLCISPG 65

Query: 109 SRQIIIDCDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVL 157
               ++ CD+  +  DG    A       AL +             + + + K +    +
Sbjct: 66  KLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNV 125

Query: 158 KGHVAAISCGMLCGYP-IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
           + +  A S  +      IVD    E+         V  + G +  +      +  +    
Sbjct: 126 RTNPVATSFAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPG-GSGLTGAKL 184

Query: 217 FAMLNLAKDRIADLIKLQKDVISN 240
              ++ A  R  ++ KL  +VI +
Sbjct: 185 QDCMSRAVTRHKEVSKLLDEVIQS 208


>gi|84999936|ref|XP_954689.1| exosome complex exonuclease [Theileria annulata]
 gi|65305684|emb|CAI74009.1| exosome complex exonuclease, putative [Theileria annulata]
          Length = 322

 Score = 55.1 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 84/264 (31%), Gaps = 42/264 (15%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR  +    +S+         G+ L+ FG+T + T  + E   P   R    G++ 
Sbjct: 32  LRIDGRSLDSYLYVSVD---FDGPPGNSLISFGNTVIFTCVSQEIVEPNSER-PNEGFLF 87

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------I 112
                   ++          G+   +   +   +    +  S +DL  L          +
Sbjct: 88  FNVE-TSFTSECY-----EPGKTTDQEHNLIYFLENMFKESSCLDLETLCITSGKQVLAL 141

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ--------LSQVLKGHVAAI 164
            +   V+Q DG   +A    A  +L    + + + S++              L  +   I
Sbjct: 142 RVYVHVLQDDGNLLSACSFSALASLLHYRKPLMELSDELNYSFYGLWHKGTPLNIYHVPI 201

Query: 165 SCGML---------------CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERA 209
              +                    +++ +  E   +      +    G ++ +  +    
Sbjct: 202 LVTVWLLETRDHSFLDHNSSEYTFVLEPNSFEQKLLKTQIIILFNQFGEVLWIYKNG-ST 260

Query: 210 TFSQDHFFAMLNLAKDRIADLIKL 233
               + F + ++ +K R + L  +
Sbjct: 261 PVPLETFESAISASKQRASQLYSI 284


>gi|289524415|ref|ZP_06441269.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502345|gb|EFD23509.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 122

 Score = 55.1 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 6/77 (7%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-----EEKVPMWIRNTK 55
           +R  GR  +++R IS    +   A GS +   G+T  +   TL     +E++   ++  +
Sbjct: 46  LRADGRAMDELRPISCEVSLLPRAHGSAVFTRGETQAMVVTTLGMFGEDEQILDGLKLDE 105

Query: 56  -HGWITAEYGMLPRSTG 71
                   Y   P S G
Sbjct: 106 PPKRFMLHYNFPPFSVG 122


>gi|255716870|ref|XP_002554716.1| KLTH0F11924p [Lachancea thermotolerans]
 gi|238936099|emb|CAR24279.1| KLTH0F11924p [Lachancea thermotolerans]
          Length = 224

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 80/240 (33%), Gaps = 36/240 (15%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
           IS    V    +GSC ++ G+T ++ + T   +     R      +  E  + P      
Sbjct: 2   ISAQTGVLDQVDGSCKLQCGETTVICSVTGPIE--PKARQELPSQLALEVVVRPC----- 54

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT------ 127
                  G    R + ++  I   +  V+       +   I   ++++ G          
Sbjct: 55  ------KGVPNTREKLLEDQIRGVVTPVLAKYLYPRQLCQICFQILES-GEPEDEYNVKE 107

Query: 128 --AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE---D 182
             + I  A++AL D    ++   +   +S +                 +V+    +    
Sbjct: 108 LNSCINAAYLALIDSGVALQSSFSSVCVSVLGS-----------NNEILVNPTQEQLIKS 156

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            +  + A  V +    I  V        F+++  F +L+ A+    ++    +  + +++
Sbjct: 157 DSTHILALEVGSGGKKIQNVLLIESNGDFTEEIMFNVLSRAEKACVEVALELRKAVEDKI 216


>gi|71032567|ref|XP_765925.1| exosome complex exonuclease Rrp41 [Theileria parva strain Muguga]
 gi|68352882|gb|EAN33642.1| exosome complex exonuclease rrp41, putative [Theileria parva]
          Length = 259

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 66/194 (34%), Gaps = 25/194 (12%)

Query: 1   MRLSGRQENQMREISL------TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNT 54
           +R+ GR++++ R   L      +     Y +G   +  G   +        ++ +     
Sbjct: 37  LRIDGRRKDEPRNTKLFFGSETSVDYLNY-DGVSEILQGLNKVQVLIKGPSELEVKGAKN 95

Query: 55  KHGW------ITAEYGMLPRSTGNRVKREAVSGRQGGRSQ-EIQRMIGRALRSVVDLSAL 107
            +G       I  E   +  ST        V      R   ++   +    + ++     
Sbjct: 96  VYGILEEKVDIHCE---ILLSTEK-----KVKNSPNERLIKDLAMAVKSTYQEMIISHCY 147

Query: 108 GSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG 167
            +  I I  +VI+ DG  ++  +    +AL D    ++D  +   +S +    +  I   
Sbjct: 148 KTSSISIFINVIEYDGSIKSTVLNAVGLALIDAGVSLKDIVSSSTVSYLDSTVLTGIHLF 207

Query: 168 MLCGYPIVDLDYGE 181
                 ++D +  E
Sbjct: 208 YYS---LLDPNQME 218


>gi|312213957|emb|CBX93959.1| similar to 3' exoribonuclease family protein [Leptosphaeria
           maculans]
          Length = 325

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 73/276 (26%), Gaps = 54/276 (19%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKF-------GDT--------HLLTTATLEEKVPMW 50
           R  N++R I L   +   A GS  ++          T         +  +    + +P  
Sbjct: 39  RGPNELRRIFLQTAIIPSASGSAYLEIPSSSPSSKSTLISPTSSLKITASIQGPKPLPRS 98

Query: 51  IRNTKHGWITAEYGMLPRSTGNRV--KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALG 108
              +    +T      P  T  R    R+A     G         +  ALR V+      
Sbjct: 99  AAFSPSLLLTTTVKFAPFGTRQRRGYIRDAAERDLG-------VHLETALRGVIIGERWP 151

Query: 109 SRQIIIDCDVI--QADG-------------------GTRTAAITGAWVALHDCLQHMEDC 147
              + +   ++    DG                         IT A  A+ D      D 
Sbjct: 152 KSGVEVVITILEGDEDGWWGDSESEGTSKGSGWGLLNVLAGCITVASAAIIDAGIDCVDI 211

Query: 148 SNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF-VMTDSGHIVEVQGSA 206
           +     + V    +            I+D    E   +        +     I E+    
Sbjct: 212 ACGGVAAIVRNPDLNDDRELAR----ILDPCPAEHKDVVAACAIGYLASRDEITEIWMKG 267

Query: 207 ERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           +          A++  A       + + K+V+   +
Sbjct: 268 DVGPDP----DALVEGATHAAVGSLAVVKEVLLEAL 299


>gi|226480868|emb|CAX73531.1| hypothetical protein [Schistosoma japonicum]
          Length = 310

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 53/150 (35%), Gaps = 17/150 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL  R   +  +I +T  V     GS LVK G T ++       KV +   N   G I 
Sbjct: 21  IRLEERDCLEFADIDVTADVLTSCHGSALVKVGRTQVIAGV----KVKVIPENGNSGSII 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR----ALRSVVDLSALGSR------ 110
                            +        S  IQR++      ++ S +++ +L         
Sbjct: 77  CNVEFAGLCHRGSRLNASQPKYAQWLSSTIQRLLNNFAFPSVESQLNIFSLNDSDMSTPV 136

Query: 111 ---QIIIDCDVIQADGGTRTAAITGAWVAL 137
               + +D  V+  DG    A +  A V+L
Sbjct: 137 ASYSLKLDLFVLHDDGCLLDACVPAALVSL 166


>gi|320582632|gb|EFW96849.1| hypothetical protein HPODL_1559 [Pichia angusta DL-1]
          Length = 222

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 46/139 (33%), Gaps = 20/139 (14%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLE-EKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           I +        +GS   +FG T ++++ T   E            ++             
Sbjct: 3   IIVENDPLDQVDGSASYEFGATKVISSVTGPIESARPRNELPTKAYLDINIR-------- 54

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD------GGTR 126
                  SG    R   ++  +G+ L +V++L     + I I   +++            
Sbjct: 55  -----PSSGVPSTRETLLEHKLGQLLPTVINLDQYPRQTIQIAVQILKNGEPKEYTARQL 109

Query: 127 TAAITGAWVALHDCLQHME 145
            A I   +VAL +    ++
Sbjct: 110 VAIINSVFVALINSGISLK 128


>gi|84999242|ref|XP_954342.1| exosome complex exonuclease rrp41 [Theileria annulata]
 gi|65305340|emb|CAI73665.1| exosome complex exonuclease rrp41, putative [Theileria annulata]
          Length = 245

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 64/194 (32%), Gaps = 45/194 (23%)

Query: 1   MRLSGRQENQMREISL------TRRVSKYAEGSCLVKFGDTHLLT----TATL--EEKVP 48
           +R+ GR+++++R   +      +     Y +G   +  G   L            EEKV 
Sbjct: 12  LRIDGRRKDELRNTKIFFGSETSVDFLNY-DGVSEILQGLNKLEVKGVKNVYGILEEKVD 70

Query: 49  MWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ-EIQRMIGRALRSVVDLSAL 107
                     I  E   +  ST        V      R   ++   +    + ++     
Sbjct: 71  ----------IQCE---ILLSTDK-----KVKNSPNERLIKDLAMAVKSTYQEMIISHCY 112

Query: 108 GSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG 167
            +  I I  ++I+ DG  ++  +    +AL D    ++D              V++ +  
Sbjct: 113 KTSAISIFINIIEYDGSIKSTVLNAVGLALIDAGVSLKDI-------------VSSSTVS 159

Query: 168 MLCGYPIVDLDYGE 181
            L    + D +  E
Sbjct: 160 YLDSTVLTDPNQME 173


>gi|326422439|gb|EGD71838.1| Putative exosome complex RNA-binding protein [Candidatus
           Parvarchaeum acidiphilum ARMAN-4_'5-way FS']
          Length = 156

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 15/150 (10%)

Query: 95  GRALRS--VVDLSAL----GSRQIIIDCDV--IQADGGTRTAAITGAWVALHDCLQHMED 146
            R +R   ++DL+ L    G     +  D+  +  +G    AA   A  A+ +    +E 
Sbjct: 6   DRGIRESNLIDLTKLVIEEGKTVSFVYVDIVCLNNEGNLFDAANIAALRAILNTKYKIEG 65

Query: 147 CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
               F L         + +   + G    D    E+ T D      +++   I  +Q   
Sbjct: 66  KEETFTLPIDKSKLAISHTFTKINGNIFFDPSAEEEKTADARFTIGLSE--KINSLQKGG 123

Query: 207 ERATFSQDHFF----AMLNLAKDRIADLIK 232
               F+ +         + + K+    L++
Sbjct: 124 -DGMFTPEEIDFCVEKAIEIRKETFKTLME 152


>gi|253742831|gb|EES99498.1| Exosome complex exonuclease, putative [Giardia intestinalis ATCC
           50581]
          Length = 315

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 63/164 (38%), Gaps = 10/164 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   + R+I+L+   +    GS LV+ G T +   A+ +  + +  +  K G IT 
Sbjct: 16  RIDGRGIGETRDIALSF-FTTR--GSVLVEKGKTKV--AASSKLSI-LSGKQLKSGRITV 69

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
               LP      V+   ++          Q +    L  V+   AL    I    +++Q 
Sbjct: 70  TCN-LPSELKETVEHINLADILTSTFASDQVVPKDTL--VIIPGALY-FVIRCSVEILQD 125

Query: 122 DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAIS 165
           DGG R A I  A  +++              +    K  V  ++
Sbjct: 126 DGGLRDACIIAAGTSIYHMGIPNVQAFRGSSIDTGNKKQVEKLT 169


>gi|321250323|ref|XP_003191768.1| ribosomal RNA-processing protein 43 [Cryptococcus gattii WM276]
 gi|317458235|gb|ADV19981.1| Ribosomal RNA-processing protein 43, putative [Cryptococcus gattii
           WM276]
          Length = 303

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 48/147 (32%), Gaps = 30/147 (20%)

Query: 2   RLSGR---------------QENQM-REISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE 45
           R  GR                 + + R++S+       A GS LV+ GDT ++     E 
Sbjct: 47  RPDGRPILSSSSSQPTASASAADDIWRQVSINTGSISTAHGSALVRMGDTTMVCGVKAEI 106

Query: 46  KVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSVVD 103
             P        G++     +   S+          G  G  +Q     +   L     + 
Sbjct: 107 GEPD-TETPGEGFVVPNIDLPALSSP-----RFKPGPPGDEAQTYSNWLNELLVSSKTIP 160

Query: 104 LSAL----GSRQIIIDCDV--IQADGG 124
           LS+L    G    ++  DV  I  DG 
Sbjct: 161 LSSLLIAPGKAAWVLYIDVVCINYDGN 187


>gi|497643|gb|AAA18832.1| PM-Scl-75 autoantigen [Homo sapiens]
          Length = 372

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 21/184 (11%)

Query: 78  AVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QIIIDCDVIQADGGTRTAA 129
              GRQ     ++ R++ R LR    +D  +L    G +  QI +D  ++  DG    AA
Sbjct: 6   FEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAA 65

Query: 130 ITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAAISCGML--CGYPIVDL 177
              A VAL    +           +     +  +   +      +S        Y +VD 
Sbjct: 66  SIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDP 125

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +  E+  +D      M     I  +Q S       +D       +A  ++A++ +L    
Sbjct: 126 NEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSKIAGVKVAEITELILKA 184

Query: 238 ISNE 241
           + N+
Sbjct: 185 LEND 188


>gi|149240693|ref|XP_001526201.1| hypothetical protein LELG_02759 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146450324|gb|EDK44580.1| hypothetical protein LELG_02759 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 341

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 19/147 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH--LLTTATLEEKVPMWIRNTKHGW 58
           +RL+GR   Q+R+IS+    ++Y  G   V FG T   +  +A++      +      G 
Sbjct: 23  LRLNGRSLMQLRDISIYLSPTEY--GYVEVSFGSTKLSVRISASIT---KPYEDRPFEGI 77

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGS------R 110
                 + P ++   +K +    +Q      I R+I +++R  + +DL  L         
Sbjct: 78  FVINSEISPMAS---LKFDTTRSQQQD-EVLISRIIEKSIRRSNALDLENLCIIAGEQCW 133

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVAL 137
           +I  D +    DGG          +AL
Sbjct: 134 EITADLNFWNYDGGMIDIGCFATMLAL 160


>gi|67523393|ref|XP_659757.1| hypothetical protein AN2153.2 [Aspergillus nidulans FGSC A4]
 gi|40745041|gb|EAA64197.1| hypothetical protein AN2153.2 [Aspergillus nidulans FGSC A4]
 gi|259487532|tpe|CBF86279.1| TPA: 3' exoribonuclease family protein (AFU_orthologue;
           AFUA_2G15980) [Aspergillus nidulans FGSC A4]
          Length = 324

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 25/136 (18%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKF--------------------GDTHLLTTATLEE 45
           RQ N++R+I L   +   A GS  ++F                        L  T    +
Sbjct: 39  RQPNELRKIFLKTGLIPSASGSSYLEFEPSASLSAARASPKFITPPSSSLKLACTVHGPK 98

Query: 46  KVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105
            +P     + +  +T      P +     KR+        R  ++   +  ALR V+   
Sbjct: 99  PLPRSATFSPNLVLTTHVKYAPFAA---RKRKGHIRDASER--DLGVHLETALRGVIVAE 153

Query: 106 ALGSRQIIIDCDVIQA 121
                 + I   +++A
Sbjct: 154 RWPKSGLDITITILEA 169


>gi|149245090|ref|XP_001527079.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146449473|gb|EDK43729.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 234

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 78/247 (31%), Gaps = 45/247 (18%)

Query: 14  ISLTRR--VSKYAEGSCLVKFGD--THLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
           ++      +   A+GS  + + +  T +L + +   +        +   +          
Sbjct: 1   MTFEVNTSILPNADGSAELVYTNNGTKVLCSVSGPIEPKPRQELPQQASL---------- 50

Query: 70  TGNRVKREAVSGRQGGRSQEIQRMIGRALRS----VVDLSALGSRQIIIDCD--VIQAD- 122
                  E +     G S   +++I   LRS    ++       + I+I     V+  D 
Sbjct: 51  -------EIIVRPARGLSTTREKLIEDKLRSLLQNIIIRYKYPRQLILIVVQFLVVDEDP 103

Query: 123 ---GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV-DLD 178
                  +AAI   + AL D         +           V     G   G  ++    
Sbjct: 104 VYLTNELSAAINCCFFALVDA--------DVALYWSFASVAVCIKGDGSGDGEQLIKSPT 155

Query: 179 YGEDSTIDVD-ANFV--MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
             E      D  + V    ++G + ++        F++   F ML      +  L +LQ+
Sbjct: 156 GKE--IAQSDSFHVVCFGIENGKVEKLLLLESAGDFTELQLFDMLGQTVGDVESLHQLQR 213

Query: 236 DVISNEV 242
             I+ +V
Sbjct: 214 KAITKKV 220


>gi|309363703|emb|CAP26025.2| CBR-EXOS-7 protein [Caenorhabditis briggsae AF16]
          Length = 307

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 84/291 (28%), Gaps = 65/291 (22%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTH-LLTTATLEEKVPMWIRNTKHGWI 59
           +R  GR     R I L R V     GSC V+ G T  +L    LE +        K    
Sbjct: 21  IRNDGRTCADFRTIVLERGVLSGTNGSCRVQLGQTTDVLAGIKLELE-SFDPAAEKEAKQ 79

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD---------LSALGSR 110
              +  +  S     +     G Q G  +EI      A    +D         L+     
Sbjct: 80  PMSFH-VDFSANASSQFAGKGGDQYG--EEISAAFQVAFSRSLDILPNLSKTLLAEGYRW 136

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS--NKFQLSQVLKGH-------- 160
           +I +D  V+Q  G    A       AL D      + +  +  ++S VLK          
Sbjct: 137 KINVDLSVLQWAGSVPDACSLAIIGALSDLEVPEVEVAPDDGGKVSIVLKRPRTGGNMRD 196

Query: 161 ---------------VAAISCGMLCGYPIVDLDYGEDSTI---------------DVDAN 190
                             ++   +    +VD    E+  I               D D  
Sbjct: 197 EEVPVAMWKLDVQSCPMLLTVSKIGSANLVDCSPEEECCIRSQLLIGVAKNLNVDDYDIT 256

Query: 191 FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
            +    G ++E+           +    M  LA      L +  +  +  E
Sbjct: 257 CIKQHGGGLLEM-----------ESIQDMTELASKTAGGLYQAIEKRLKTE 296


>gi|50556492|ref|XP_505654.1| YALI0F20240p [Yarrowia lipolytica]
 gi|49651524|emb|CAG78463.1| YALI0F20240p [Yarrowia lipolytica]
          Length = 216

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 68/232 (29%), Gaps = 34/232 (14%)

Query: 18  RRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKRE 77
             +    +GS   + G T ++ + T   +            +              V R 
Sbjct: 1   MNILNNVDGSAKWEQG-TSVICSVTGPIETRRRTDEPTLAQV------------ELVIRP 47

Query: 78  AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT------RTAAIT 131
           A+ G+   R   I+  I   L + V  +      + I   +++   GT        A + 
Sbjct: 48  AI-GQATTRETLIKDRIYSVLAATVVRNLYPRMLLQIVIQILEQGEGTGYNVLKLAACLN 106

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
              +AL D                 + G   A++  ++    I+     + S        
Sbjct: 107 AVCLALID-------------SRTPMTGLFTAVAIAIVDDKLILHPTRKQVSQSTSTHAV 153

Query: 192 VM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
               ++     +        F+++  F +L  A     D+    ++ I   V
Sbjct: 154 SYFVENNKATGLLMCESEGEFTENQLFEVLEQAARACEDVALDMRERIEKGV 205


>gi|289524567|ref|ZP_06441421.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502193|gb|EFD23357.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 187

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 12/110 (10%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           T  ++K A G+   ++GDT +L TA +E    E V  +     +       G +P   G 
Sbjct: 25  TGHLAKQANGAVYARYGDTAVLVTACMEDEPREDVDFFPLIVDYEERFYAAGKIP---GG 81

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
            +KRE   G+    +    R++ R++RS+          + +   ++  D
Sbjct: 82  FIKRE---GKPSESAILSARLVDRSIRSLFPEHM--KNDVHVVATILSVD 126


>gi|179287|gb|AAA58384.1| autoantigen [Homo sapiens]
 gi|63992811|gb|AAY40968.1| unknown [Homo sapiens]
          Length = 355

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 21/184 (11%)

Query: 78  AVSGRQGGRSQEIQRMIGRALR--SVVDLSAL----GSR--QIIIDCDVIQADGGTRTAA 129
              GRQ     ++ R++ R LR    +D  +L    G +  QI +D  ++  DG    AA
Sbjct: 6   FEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAA 65

Query: 130 ITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAAISCGML--CGYPIVDL 177
              A VAL    +           +     +  +   +      +S        Y +VD 
Sbjct: 66  SIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDP 125

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +  E+  +D      M     I  +Q S       +D       +A  ++A++ +L    
Sbjct: 126 NEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSKIAGVKVAEITELILKA 184

Query: 238 ISNE 241
           + N+
Sbjct: 185 LEND 188


>gi|302891493|ref|XP_003044628.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256725553|gb|EEU38915.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 283

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 61/188 (32%), Gaps = 20/188 (10%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKF------G--DTHLLTTATLEEKVPMWIRNTKHG 57
           R  N +R   L   V+  A GS  ++       G     L  T      +P     + H 
Sbjct: 31  RPPNGVRSQYLRTGVTASASGSAYLEIESQDASGSKGMKLTCTVHGPRSLPRSAPFSPHM 90

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            ++      P +T  R +R  +        +++   +  ALR  +         + +   
Sbjct: 91  VLSTHVKYAPFAT--RQRRGYLR---DASERDLSSHLEAALRGALIADRWPKSGVDVIVT 145

Query: 118 VIQADGGTRTAAITGA-------WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           +++ D   + A   G+        ++    +               + G VAA+  G   
Sbjct: 146 IVEGDQARQVAVEQGSEEWDMMNVLSGCITVAAAALADAGIDCVDTVSGGVAALVPGQDD 205

Query: 171 GYPIVDLD 178
             P++ LD
Sbjct: 206 KEPLLVLD 213


>gi|316973204|gb|EFV56824.1| putative exosome complex exonuclease RRP43 [Trichinella spiralis]
          Length = 280

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 82/252 (32%), Gaps = 26/252 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR+ NQ R  ++ R +   A+ S + + G T  +    LE      +  +    + 
Sbjct: 28  IRYDGRKTNQFRNAAVHRNMITTADSSAVARIGGTAAICGINLEIMENDTLIPSPGLVVN 87

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRS-QEIQRMIGRALRSVVDLSALGSRQIIIDCD-- 117
            E  + P    +  + E    +   +S  E   +  ++L  + D         +I CD  
Sbjct: 88  IE-SVSPTIVVS-WQNEIDKTKCILKSLIEKNIVNSKSLE-IFDGELFW----VIYCDFV 140

Query: 118 VIQADGGTRTAAITGAWVALH------------DCLQHMEDCSNKFQLSQVL---KGHVA 162
           V+   GG     +     AL             D   ++++       +  +     +  
Sbjct: 141 VLDCAGGILEVCLVALLAALQELRFPVVKVLHEDFKINLKNIKVDTAETSPVLFPNVYPV 200

Query: 163 AISCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           A S         I D    E   I      ++     +  +  +   A+ S+      + 
Sbjct: 201 ACSFLKFGDEILICDPTDEETKLIGDAFTIIVGAQKTLCGLFKTGGAASLSKQLIDESVE 260

Query: 222 LAKDRIADLIKL 233
            A  R   +++L
Sbjct: 261 HALKRRRHILQL 272


>gi|119482067|ref|XP_001261062.1| 3' exoribonuclease family protein [Neosartorya fischeri NRRL 181]
 gi|119409216|gb|EAW19165.1| 3' exoribonuclease family protein [Neosartorya fischeri NRRL 181]
          Length = 320

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 89/277 (32%), Gaps = 47/277 (16%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKF--------------------GDTHLLTTATLEE 45
           RQ N++R+I L   +   A GS  ++F                        L  T    +
Sbjct: 38  RQPNELRKIFLKTGLIPSASGSSYLEFEPSASLAAARSSPQSLIPPSSALKLACTVHGPK 97

Query: 46  KVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105
            +P     + +  +T      P +     +R+        R  ++   +  ALR V+   
Sbjct: 98  PLPRSATFSPNLVLTTHVKYAPFAA---RRRKGHIRDTSER--DLGVHLETALRGVIVAE 152

Query: 106 ALGSRQIIIDCDVIQA-------DGGTRTAAITGAWVALHDCLQHMEDCSNKFQLS--QV 156
                 + I   +++A       D      A  G    L  C+          ++    +
Sbjct: 153 RWPKSGLDITITILEAEDDRWWGDAPDSHDAPWGMMNVLAGCITAASAAIADARIDCLDL 212

Query: 157 LKGHVAA-ISCGMLCGY-----PIVDLDYGEDSTIDVDANFV-MTDSGHIVEV--QGSAE 207
           + G VAA +S  +  G       ++D D  E  +I        M     I E+  +G + 
Sbjct: 213 VAGGVAALVSDELPEGERSAPKLMLDTDPAEHRSILSACVVAYMPSRDEITEIWLKGDSS 272

Query: 208 RATFSQDHF----FAMLNLAKDRIADLIKLQKDVISN 240
           +   + D       A+++ A D       +  + +  
Sbjct: 273 KVLLAPDDKRSGHDALIDGAVDAARGAHTVLAEAVRE 309


>gi|255953039|ref|XP_002567272.1| Pc21g02070 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588983|emb|CAP95104.1| Pc21g02070 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 315

 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 86/280 (30%), Gaps = 51/280 (18%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKF----------GDTHLL----------TTATLEE 45
           RQ  ++R+I L   +   A GS  ++F           +   L           T    +
Sbjct: 37  RQPTELRKIFLKAGLIPTASGSSYLEFEPSASLAAARSNPKSLIPPSSALKLACTVHGPK 96

Query: 46  KVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105
            +P     + +  +T      P +     KR+        R  ++   +  ALR  +   
Sbjct: 97  PLPRSAAFSPNLVLTTHVKYAPFAA---RKRKGHIRDASER--DLGVHLETALRGAIIAE 151

Query: 106 ALGSRQIIIDCDVIQA-------DG-GTRTAA-ITGAWVALHDCLQHMEDCSNKFQLSQV 156
                 + I   +I+A       D   +  A+      +A                   +
Sbjct: 152 RWPKSGLDITLTIIEAEDDRWWGDAPDSHDASWGMMNVLAGCITAASAAIADAHIDCLDL 211

Query: 157 LKGHVAAISCGMLCG------YPIVDLDYGEDSTIDVDANFV-MTDSGHIVE--VQGSAE 207
           + G VAA+               ++D+D  E  +I        M     I E  ++G + 
Sbjct: 212 VSGGVAALVSDDSSQSASSAPRLMLDIDPAEHRSILSACVVAYMPARDEITELWLKGDSS 271

Query: 208 RATFSQDH--------FFAMLNLAKDRIADLIKLQKDVIS 239
           RA   ++             ++ A+     L +  ++ I+
Sbjct: 272 RAALDRNDGRTGHEALIDGAVDAARGANTVLAEAVRESIA 311


>gi|193652700|ref|XP_001948203.1| PREDICTED: exosome complex exonuclease RRP46-like [Acyrthosiphon
           pisum]
          Length = 211

 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 72/231 (31%), Gaps = 34/231 (14%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
           +          EGS  +  G + +  +       P   + +K         M  R+T + 
Sbjct: 6   LKCQLGFLGNTEGSAYLSQGKSTVSVSVVG----PFEPKASKC--------MYDRATVDV 53

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGA 133
             R   +G      + ++ ++       + +       I++    +Q  G   +  +  +
Sbjct: 54  TFRR-KTGSITVHDKMLEGIMQSTCEKALVVEQYPRTTIVVTVQEMQDRGNLLSTCLNAS 112

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS----TIDVDA 189
            + L +    M                 AA+SC +     I+ L+  E         +  
Sbjct: 113 CMGLMNSGIAMHHLY-------------AAVSCAVTEKEEII-LNPDETQINSSVAYLTL 158

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            F  T++  ++    + E   FSQ  +   ++       ++    + VI  
Sbjct: 159 VFANTETRCLLTSHTTGE---FSQKTYMDCMDKCYAASKEVFNFYQKVIKK 206


>gi|225712550|gb|ACO12121.1| Exosome complex exonuclease RRP45 [Lepeophtheirus salmonis]
          Length = 210

 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 33/177 (18%)

Query: 2   RLSGRQENQMREISL----TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHG 57
           RL GR+ ++ R++++        ++       VK G+T +L + +     P   R    G
Sbjct: 20  RLDGRKLDERRDLTIHFGREWGTTE-------VKLGETRVLASTSCSVGEPQSSR-PNEG 71

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ---- 111
            +             R++  A          E+ R+I R L+    +D+ +L        
Sbjct: 72  VLKI-----------RMEPLAKRSMTTEALVELNRVIERVLKQSKCLDMESLCISSGEKV 120

Query: 112 --IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC 166
             I ++  ++   G     A      AL    +   D + K   +  +   V  +S 
Sbjct: 121 WIISLEMTILNDAGNAADCASVAGLAALCHFKRP--DVTLKANTTPKVIKSVYILST 175


>gi|301620138|ref|XP_002939437.1| PREDICTED: exosome complex exonuclease RRP46 [Xenopus (Silurana)
           tropicalis]
          Length = 181

 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 16/149 (10%)

Query: 92  RMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF 151
           ++I     SV+  S      I I   ++   G   +  +  A + L D    M       
Sbjct: 42  QLIRETCESVIIGSLHPRTSITIVLQIVSDAGSLLSCCLNAACMGLMDAGLPMRAL---- 97

Query: 152 QLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERAT 210
                       ++C M   G   +D ++ +         F +  +   V     + R  
Sbjct: 98  ---------FCGVTCAMDNDGTITLDPNFRQQKESRAVLTFAIESTERKVL--MMSNRGV 146

Query: 211 FSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           +S       +  A+     L +  +D I 
Sbjct: 147 YSATELQQCIAAAQIASEKLFQFYRDFIR 175


>gi|119628985|gb|EAX08580.1| exosome component 8, isoform CRA_b [Homo sapiens]
          Length = 108

 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT 42
           R  GR+  + R  ++       A+GS LVK G+T ++    
Sbjct: 60  RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVK 100


>gi|154346388|ref|XP_001569131.1| exosome-associated protein 4 [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134066473|emb|CAM44266.1| putative exosome-associated protein 4 [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 221

 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 65/231 (28%), Gaps = 31/231 (13%)

Query: 2   RLSGR-QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           R  GR     +R I +   +      S  V+ G T +L      +++    R T  G ++
Sbjct: 3   RADGRESPEAVRAIHVATNMLANCHSSACVEIGQTRVLCGVRPPQQLVQEYRGT-RGRVS 61

Query: 61  AEYGMLPRST---GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
            +      S+    N   R+     +G                 V L  +    + +  +
Sbjct: 62  CQVHRSLASSLNLDNSSDRDMALALEG------------VAEQAVVLERIPQLLVEVLIE 109

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           ++  DG            A+ D        +      ++     A  +     G  + DL
Sbjct: 110 IVHDDG------------AVWDAATTALCAALTAGGVELYDSFSACSAALRHDGAIVADL 157

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIA 228
              E       A+ V+     +  V     R          +L  A   I 
Sbjct: 158 AREE--AATAIASVVVCSGLSLGGVYYCCHRGACEATTMSQLLQAAMKGIQ 206


>gi|294873385|ref|XP_002766601.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
           50983]
 gi|239867633|gb|EEQ99318.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
           50983]
          Length = 418

 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 80/248 (32%), Gaps = 31/248 (12%)

Query: 21  SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80
           ++ A G      G T +    T +   P   R  + G ++      P +    +     S
Sbjct: 20  TRPALGQAECSIGKTRIRAVVTGQLTSPPSNR-PREGRLSINVEAGPMAAPAVLPSGNSS 78

Query: 81  G----RQGGRSQEIQRMIGRALRS--VVDLSALGSR------QIIIDCDVIQADGGTRTA 128
           G     Q      +   + R L+    VD+ AL  +      ++ +D  V+  +G    A
Sbjct: 79  GLVGSAQTPEGISLCNQLERMLKGSNAVDVEALCIQSGSLVWELRLDVHVLSDNGNVGDA 138

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV-------------AAISCGMLCGYPIV 175
           A   + VAL    +      N   + +     +             A+I   +     ++
Sbjct: 139 AAIASTVALRHYRRAEVSVVNGEIIYKPDLDPIPLSVHHMPIPVTFASIPSSLGENPLLL 198

Query: 176 -DLDYGEDSTIDVD---ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
            D    E+S +  D      VM   G +     S   +          + LA  R+ ++ 
Sbjct: 199 ADPSSLEES-LQGDGGQLVVVMNQYGELCGALKSGGASLMLHRDLMPAIRLATARVKEVT 257

Query: 232 KLQKDVIS 239
            L  + ++
Sbjct: 258 ALIDEKLA 265


>gi|76154707|gb|AAX26137.2| SJCHGC06449 protein [Schistosoma japonicum]
          Length = 170

 Score = 53.6 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 53/150 (35%), Gaps = 17/150 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL  R   +  EI +T  V     GS LVK G T ++       KV +   N   G I 
Sbjct: 21  IRLEERDCLEFAEIDVTADVLTSCHGSALVKVGRTQVIAGV----KVKVIPENGNSGSII 76

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR----ALRSVVDLSALGSR------ 110
                            +        S  IQR++      ++ S +++ +L         
Sbjct: 77  CNVEFAGLCHRGSRLNASQPKYAQWLSSTIQRLLNNFAFPSVESQLNIFSLNDSDMSTPV 136

Query: 111 ---QIIIDCDVIQADGGTRTAAITGAWVAL 137
               + +D  V+  DG    A +  A V+L
Sbjct: 137 ASYCLKLDLFVLHDDGCLLDACVPAALVSL 166


>gi|322697336|gb|EFY89117.1| 3' exoribonuclease family protein [Metarhizium acridum CQMa 102]
          Length = 339

 Score = 53.6 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 2  RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
          R +GR  +Q+R  ++      +  GS LV+ GDT  +     E    + VP +  + +  
Sbjct: 36 RSNGRAPDQLRLTTVNLSSLSHPHGSSLVRMGDTTAICGVRGETILTQHVPNYRASNRET 95

Query: 58 WIT 60
           + 
Sbjct: 96 ELR 98


>gi|207108928|ref|ZP_03243090.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 190

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 67/190 (35%), Gaps = 29/190 (15%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S L + G T +L +  +E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLLYRLGKTIILASVCVERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLSALGSRQIIIDC--DVIQADGGTRTAAITGA 133
             ++ GR+Q  EI   R+I R LR +         QI +      I+ D           
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEND----------- 121

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM 193
              L     +    +        +K  V+A     +    +++ +    +   +D     
Sbjct: 122 ---LQVSALNAASAALFLAHIAPIK-SVSACRIARVDNEFLINPNTSLLNQSSLDLFVSG 177

Query: 194 T-DSGHIVEV 202
           T +S +++E+
Sbjct: 178 TKESLNMIEM 187


>gi|71022771|ref|XP_761615.1| hypothetical protein UM05468.1 [Ustilago maydis 521]
 gi|46101168|gb|EAK86401.1| hypothetical protein UM05468.1 [Ustilago maydis 521]
          Length = 332

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 1/75 (1%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR     R+ ++T      A+GS  V+ G+T  +     E   P  +   + G++ 
Sbjct: 30  IREDGRPLAAFRDATITLGSISTADGSSFVRIGNTSCIAAIKAEVATP-QLSRPREGYLI 88

Query: 61  AEYGMLPRSTGNRVK 75
               +    +     
Sbjct: 89  PNVELPAVCSSKFKP 103


>gi|224013774|ref|XP_002296551.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968903|gb|EED87247.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 374

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 57/321 (17%), Positives = 94/321 (29%), Gaps = 89/321 (27%)

Query: 1   MRLSGRQENQMREISLTRRVS-KYAEGSCLVKFGD---------THLLTTATLEEKVPMW 50
           +R  GR  +  R +++      + + GS +V  G          T ++   TL    P  
Sbjct: 50  VRPDGRPFHTSRPVTVLTSFLNRNSSGSAMVTLGGDDGSDNSSSTRVIAACTLLVGHPG- 108

Query: 51  IRNTKHGWITAEYGMLPRSTGNR--VKREA-----------------------------V 79
                HG I       P S      + RE+                              
Sbjct: 109 PSTPTHGDIDVLVTASPLSGPRFDCMGRESMDAANAFYNYNSVSGEKDDGVVQLNPETPS 168

Query: 80  SGRQGGRSQEIQRMIGRALRSV--VDLSALG------SRQIIIDCDVIQADGGTRTAAIT 131
           S  Q   +++I+  I R LRS   +D + LG      + +I I   +I  DG    AA+ 
Sbjct: 169 SSPQPTDTKDIESWIRRTLRSSRFIDPTELGIEPGKLAWRIRISIQIINHDGNVADAALL 228

Query: 132 GAWVALHDCLQHMEDCSNK--------------------------------------FQL 153
            A  AL D    M +   +                                        L
Sbjct: 229 CACAALGDLKLPMVEVDRREGGVVRIVKEDEAQVMNGGRNKDVEMRKGRSLTLGPLPVPL 288

Query: 154 SQVLKGHVAAISCGMLCGYPIVDLD-YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFS 212
           +  +  ++ + +        +VD     ED +       V   +  IVE       +  S
Sbjct: 289 TIAILPNIKSKTSASESSILLVDPTRLEEDVSSGNTITMVCNANEEIVEFHKRGSESRLS 348

Query: 213 QDHFFAMLNLAKDRIADLIKL 233
            D   A+  +   R  +L  L
Sbjct: 349 MDQIAAVACMGFGRAKELEAL 369


>gi|169841859|ref|ZP_02874968.1| ribonuclease PH [candidate division TM7 single-cell isolate TM7a]
          Length = 36

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/35 (60%), Positives = 27/35 (77%)

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN 149
           DCDVIQADGGTRTA+ITGA++AL   ++ + D   
Sbjct: 1   DCDVIQADGGTRTASITGAYLALELAVEKLIDQGE 35


>gi|221484708|gb|EEE23002.1| exosome complex exonuclease, putative [Toxoplasma gondii GT1]
          Length = 449

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 25/149 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR  +  R + ++    + + G   +  G T  ++  T      +       G ++
Sbjct: 21  LRVDGRGPDHFRRLQIS---FRQSNGYAEIALGHTRCVSQVTARPFALLPTDRASDGELS 77

Query: 61  AEYGMLPR--STGNR--------VKREAVSGRQGGRSQEIQRMIGRALRS------VVDL 104
               + P   +T               A S R+GG+S E++R + R LR       VVD 
Sbjct: 78  FRVSLSPSIPATSAELAGQVALAASLAADSRRRGGKSSELERELERMLRRLLKDSRVVDT 137

Query: 105 SALGSRQ------IIIDCDVIQADGGTRT 127
            AL  +       +++   V++ DG  R 
Sbjct: 138 EALCIQSGKWAWHVLVAVTVLEDDGNLRD 166


>gi|330981096|gb|EGH79199.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 288

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
              I +  ++ +++G +  A++ GA +AL D    M             K  VA I+ G+
Sbjct: 10  PYTIRVVSEITESNGSSSMASVCGASLALMDAGVPM-------------KAPVAGIAMGL 56

Query: 169 L-CGY---PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
           +  G     + D+   ED   D+D     T  G +  +Q   +    +++     L  A 
Sbjct: 57  VKEGEKFANLTDILGDEDHLGDMDFKVAGTSKG-VTALQMDIKIKGITEEIMEIALGQAL 115

Query: 225 DR 226
           + 
Sbjct: 116 EA 117


>gi|213423016|ref|ZP_03356034.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 233

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 8/100 (8%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT- 60
           R+ GR+++ +R + +   V     GS L   G+T  L TATL       + +   G  T 
Sbjct: 137 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 196

Query: 61  ---AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA 97
                Y   P S G      +   R+ G      R+  R 
Sbjct: 197 SFLFHYNFPPYSVGETGMVGSPKRREIGHG----RLAKRG 232


>gi|237843665|ref|XP_002371130.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
 gi|211968794|gb|EEB03990.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
          Length = 447

 Score = 53.2 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 25/149 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR  +  R + ++    + + G   +  G T  ++  T      +       G ++
Sbjct: 21  LRVDGRGPDHFRRLQIS---FRQSNGYAEIALGHTRCVSQVTARPFALLPTDRASDGELS 77

Query: 61  AEYGMLPR--STGNR--------VKREAVSGRQGGRSQEIQRMIGRALRS------VVDL 104
               + P   +T               A S R+GG+S E++R + R LR       VVD 
Sbjct: 78  FRVSLSPSIPATSAELAGQVALAASLAADSRRRGGKSSELERELERMLRRLLKDSRVVDT 137

Query: 105 SALGSRQ------IIIDCDVIQADGGTRT 127
            AL  +       +++   V++ DG  R 
Sbjct: 138 EALCIQSGKWAWHVLVAVTVLEDDGNLRD 166


>gi|71002504|ref|XP_755933.1| 3' exoribonuclease family protein [Aspergillus fumigatus Af293]
 gi|66853571|gb|EAL93895.1| 3' exoribonuclease family protein [Aspergillus fumigatus Af293]
 gi|159129990|gb|EDP55104.1| 3' exoribonuclease family protein [Aspergillus fumigatus A1163]
          Length = 320

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 25/136 (18%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKF--------------------GDTHLLTTATLEE 45
           RQ N++R+I L   +   A GS  ++F                        L  T    +
Sbjct: 38  RQPNELRKIFLKTGLIPSASGSSYLEFEPSASLAAARSSPQSLIPPSSALKLACTVHGPK 97

Query: 46  KVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105
            +P     + +  +T      P +     +R+        R  ++   +  ALR V+   
Sbjct: 98  PLPRSATFSPNLVLTTHVKYAPFAA---RRRKGHIRDTSER--DLGVHLETALRGVIVAE 152

Query: 106 ALGSRQIIIDCDVIQA 121
                 + I   +++A
Sbjct: 153 RWPKSGLDITITILEA 168


>gi|322830681|gb|EFZ33623.1| ribosomal RNA processing protein 41B, putative [Trypanosoma cruzi]
          Length = 270

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 10/139 (7%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGM----- 65
           MR   L        +GS     G T ++         P+  R   +     +  +     
Sbjct: 1   MRGKELRTSELTQFDGSAWYSQGLTTVVAAVNG----PVAARQEDYRKCGVQVYVNRAVR 56

Query: 66  LPRSTG-NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG 124
           +PR+ G +R+  E     Q     E++  +  ++++VV L       + +   ++  DG 
Sbjct: 57  IPRAGGTDRLCVEEQRVEQRRMDAEVEMFLTASIQAVVRLDQFPRCVLEVHVTILADDGA 116

Query: 125 TRTAAITGAWVALHDCLQH 143
             + A      AL D    
Sbjct: 117 LLSVATNALMCALLDAGVP 135


>gi|301097178|ref|XP_002897684.1| exosome complex exonuclease RRP45-like protein [Phytophthora
           infestans T30-4]
 gi|262106705|gb|EEY64757.1| exosome complex exonuclease RRP45-like protein [Phytophthora
           infestans T30-4]
          Length = 513

 Score = 52.4 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 12/138 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR   Q R+I +  R S+ +E    V+ G T ++     E  VP +      G++ 
Sbjct: 28  LRADGRDLLQQRKIRVQFRRSE-SESQAEVQLGRTRVIGNVHGEI-VPPFPDRPTEGFLH 85

Query: 61  AEYGMLPRSTG--NRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSAL----GSRQ- 111
               + P ++         +        + E+ R++ R LR    +D  AL    G +  
Sbjct: 86  FAVELSPMASPSFEASASASRGAASSVAAAELARLVERGLRESRALDTEALAVVAGEKVW 145

Query: 112 -IIIDCDVIQADGGTRTA 128
            I     V+   G    A
Sbjct: 146 AITCHVHVVDHGGNIVDA 163


>gi|254571745|ref|XP_002492982.1| Protein involved in rRNA processing [Pichia pastoris GS115]
 gi|238032780|emb|CAY70803.1| Protein involved in rRNA processing [Pichia pastoris GS115]
 gi|328353004|emb|CCA39402.1| Polyribonucleotide nucleotidyltransferase [Pichia pastoris CBS
           7435]
          Length = 221

 Score = 52.4 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 67/234 (28%), Gaps = 35/234 (14%)

Query: 17  TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKR 76
              +    +GS  +  G+  ++ + T   +            I             R K 
Sbjct: 7   QTSLLNKVDGSSTISIGEVKVICSVTGPIEAKPRQELPTQCAIEVNIRPEVGVGSTREKN 66

Query: 77  EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI---QA-DGGTRT--AAI 130
                R               L   ++      + I +   +I   QA +   +   A I
Sbjct: 67  MEDKLRV-------------VLNGTINKFQYPRQLIQVHLHIISKSQATENNLKDLHACI 113

Query: 131 TGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDAN 190
            GA++AL D    +                  +    +     I +    E     +  +
Sbjct: 114 NGAYLALIDANISLL-------------SSFLSTYAVINDDRLIFNPT-SEQIQSSISHH 159

Query: 191 FVM--TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            V     SG   E+        F++     +L+ + + I  + K+ +  I+ +V
Sbjct: 160 LVCFDIKSGRADELLFVDSVGEFTEGELMTVLDQSIEEIESMNKIVRKTITEKV 213


>gi|224152200|ref|XP_002198831.1| PREDICTED: similar to putative exosome component 5, partial
           [Taeniopygia guttata]
          Length = 185

 Score = 52.4 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 60/202 (29%), Gaps = 33/202 (16%)

Query: 34  DTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQG--GRSQEIQ 91
           DT +L       +  +         +              + R  V G  G   RS+E  
Sbjct: 1   DTSVLAGLYGPAEAKISKELPDRAALDV------------LLRPKV-GLPGVLERSRE-- 45

Query: 92  RMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF 151
           +++ +   +VV         I +   V+   G   +  +  A +AL D    +       
Sbjct: 46  QLLQQTCEAVVLGVLHPRTAISLVLQVLSDAGSLLSCCLNAACMALLDAGLPLSAL---- 101

Query: 152 QLSQVLKGHVAAISCGML-CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERAT 210
                       ++C +   G  ++D    ++        F +  +   V +  +  + +
Sbjct: 102 ---------FCGVTCALQPDGAILLDPTARQEQEARAVLTFAIASAERKVLMVTT--KGS 150

Query: 211 FSQDHFFAMLNLAKDRIADLIK 232
            S       L  ++     + +
Sbjct: 151 CSVQEMQQCLAASQRAADTIFQ 172


>gi|310797863|gb|EFQ32756.1| exosome complex exonuclease RRP43 [Glomerella graminicola M1.001]
          Length = 339

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 69/260 (26%), Gaps = 69/260 (26%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWI------ 51
           R +GR  N+ R  ++      +A GS +V+ GDT ++     E      +P +       
Sbjct: 35  RSNGRAPNEARIPNINTSSLTHANGSAVVRTGDTTVICGVRAETILASDIPNFRTAANTD 94

Query: 52  ------RNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQ------EIQRMIG-RAL 98
                     +  +     +        +     +      S          R++    L
Sbjct: 95  EAKSSSELKDYDLLVPNIELATGCAPQFLPGVPPTTLAQTMSTRVYSLLHSSRLVDPEDL 154

Query: 99  R-------------------SVVDLSALGSRQI------IIDCDVIQADGGTRTAAITGA 133
           R                      +    G R I       ID   +  DG     A    
Sbjct: 155 RIWYTRPAEDAEAEDDDDKMDDGEEKTEGERVIMAYWVLYIDIFFVSFDGNPFDVAWAAI 214

Query: 134 WVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAISCGMLCGY------------ 172
             AL D             M  CS        L G   A + G+  G             
Sbjct: 215 LAALRDTTIPIARWDPDREMIICSRDDPKPLTLHGFPVACTAGVFTGKETADRPAGGKFW 274

Query: 173 PIVDLDYGEDSTIDVDANFV 192
            +VD D  E+S  + +   V
Sbjct: 275 TLVDPDRLEESLCEEEVTAV 294


>gi|39970415|ref|XP_366598.1| hypothetical protein MGG_02674 [Magnaporthe oryzae 70-15]
 gi|149209849|ref|XP_001522299.1| hypothetical protein MGCH7_ch7g406 [Magnaporthe oryzae 70-15]
 gi|86196361|gb|EAQ70999.1| hypothetical protein MGCH7_ch7g406 [Magnaporthe oryzae 70-15]
 gi|145017527|gb|EDK01890.1| hypothetical protein MGG_02674 [Magnaporthe oryzae 70-15]
          Length = 357

 Score = 52.0 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 11/80 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKHG 57
           R +GR + + R +++      +A+GS +V+ GDT ++     E      +P +       
Sbjct: 43  RTNGRAQTESRVVNVNTGSLSHAQGSAVVRCGDTTVICGVRAEILPVASIPNYRALEDDA 102

Query: 58  WITAEYGMLPRSTGNRVKRE 77
              A       +   R +RE
Sbjct: 103 GTLA-------AGTERGRRE 115


>gi|321260198|ref|XP_003194819.1| hypothetical protein CGB_F4390W [Cryptococcus gattii WM276]
 gi|317461291|gb|ADV23032.1| conserved hypothetical protein [Cryptococcus gattii WM276]
          Length = 332

 Score = 52.0 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 58/176 (32%), Gaps = 11/176 (6%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPMWIRNTKHGWI 59
           R   R     R I ++  V   A GS  VK G T +++   LE  + V   ++  +    
Sbjct: 28  RNDARPLFASRPIQISYGVFPQANGSAQVKLGGTEIVSGVKLEVVDVVGQQVKGQETWRT 87

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSR---QIIID 115
             E  + P++  N       S      S  +  ++       +  L  L ++   Q  + 
Sbjct: 88  KVEVDVTPQAFPN-----VSSPSLSALSTHLTSIVASHFIPSIPALPILPNKKYFQPHLH 142

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG 171
             V+ + G   +A I  A  A  D         +    S         +  G + G
Sbjct: 143 LTVLSSCGNVPSALILAARAAFADLKVPKIKVISWVGESGENADDGVDVGRGDMSG 198


>gi|126136733|ref|XP_001384890.1| Exosome complex exonuclease RRP46 (Ribosomal RNA processing protein
           46) [Scheffersomyces stipitis CBS 6054]
 gi|126092112|gb|ABN66861.1| Exosome complex exonuclease RRP46 (Ribosomal RNA processing protein
           46) [Scheffersomyces stipitis CBS 6054]
          Length = 226

 Score = 52.0 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 80/249 (32%), Gaps = 54/249 (21%)

Query: 15  SLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74
           S+   + + ++GS  +  G T ++ + T   +                      ++   +
Sbjct: 3   SVNTSLLQKSDGSAELLLGSTKVIASVTGPIEPKARQELPNQ------------ASLEIL 50

Query: 75  KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDC------------DVIQAD 122
            R AV G    R + ++  +   L+S++       + I +              D++   
Sbjct: 51  IRPAV-GLATTREKLLEDKLRSLLQSIIVRFKYPRQLIQVVVQFLISDSKRTETDLVDYT 109

Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
                AAI   + AL D    +             K    ++S  +  G   V+    E 
Sbjct: 110 SNDLNAAINCCYYALIDAGIAL-------------KASFVSLSIAVKNGNLTVNPTVYE- 155

Query: 183 STIDVD------ANFVMTDSGHIVEV--QGSAERATFSQDHFFAMLNLAKDRIADL-IKL 233
                D       N     +  I+ +  QG  +      D  FAM++ A +    +  + 
Sbjct: 156 -LAQSDSHHVICFNIEKGKANKILLLESQGDIKE-----DELFAMISKAVEEAEKVHHEQ 209

Query: 234 QKDVISNEV 242
           Q+  +  +V
Sbjct: 210 QRKFVKEKV 218


>gi|114677473|ref|XP_001152117.1| PREDICTED: similar to Exosome component 5 isoform 1 [Pan
           troglodytes]
          Length = 197

 Score = 52.0 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 14/103 (13%)

Query: 92  RMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF 151
           R+I     +VV  +      I +   V+   G      +  A +AL D    M       
Sbjct: 58  RLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRAL---- 113

Query: 152 QLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDANFVM 193
                       ++C +   G  ++D    ++        F +
Sbjct: 114 ---------FCGVTCALDSDGTLVLDPTSKQEKEARAVLTFAL 147


>gi|19074289|ref|NP_585795.1| similarity to HYPOTHETICAL PROTEIN OF THE RNASE PH FAMILY
           YBX3_SCHPO [Encephalitozoon cuniculi GB-M1]
 gi|19068931|emb|CAD25399.1| similarity to HYPOTHETICAL PROTEIN OF THE RNASE PH FAMILY
           YBX3_SCHPO [Encephalitozoon cuniculi GB-M1]
          Length = 218

 Score = 52.0 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 75/233 (32%), Gaps = 37/233 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R   R+  + R + + R        SCLV  G + LL T   +     +I     G ++ 
Sbjct: 12  RFDNRKIEEARRLEVER--ISN---SCLVTMGASQLL-TVFQKSTSRPYIDRPHEGIVS- 64

Query: 62  EYGMLPRSTG----NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
                  STG     R+           +S +++ +  R    VV         I ID  
Sbjct: 65  ----FSVSTGAKKYERLVNFLHKVYIKQKSIDLESLCIRLNEEVVL--------IHIDLR 112

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
           V+  DG   + AI+G    L      M            +       S G   G  + D 
Sbjct: 113 VLSGDGSIYSLAISGVNSVLEALGVRM----------NYVPQCFFYCSIG---GVVVTDP 159

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
              E +  D     +M     +V ++      +  +     +   AKD + ++
Sbjct: 160 SEDEQNKGDWSCVVIMKSPKEVVLLEKMGRECSV-EAVLETVYKSAKDSVVEV 211


>gi|71416323|ref|XP_810197.1| ribosomal RNA processing protein 45 [Trypanosoma cruzi strain CL
           Brener]
 gi|70874694|gb|EAN88346.1| ribosomal RNA processing protein 45, putative [Trypanosoma cruzi]
          Length = 334

 Score = 52.0 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 83/275 (30%), Gaps = 44/275 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   Q+RE+++   +    + SC V+ G T +       E V  +    KHG I 
Sbjct: 32  LRPDQRGAQQLREVNVDFPLLSR-DVSC-VRCGGTIVTAAI-ACELVEPFPYRPKHGIID 88

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL----GSR--QIII 114
                 P +  +   + A   +    +  ++R+I      VVD   L    G R   I +
Sbjct: 89  FSVRQ-PYTERDSSAKTAELKKL---TAFLERLIKGG--GVVDTEGLCVLPGRRVWSISV 142

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL--------SQVLKGHVAAISC 166
           D  V+  +G     A+      L    +          +           L  H   +S 
Sbjct: 143 DVTVLNDEGNVTDVAVWATVAVLLHYRRPELTIRGDSVILHPTHERDPVPLSIHHTPLSF 202

Query: 167 GMLCG--------------------YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
                                      +VD  + E +         +   G +  V  S 
Sbjct: 203 SFAITMAPGDRNRLARGRRDSQEALEVVVDPTFAEATAASSSVVVAVNAEGQVCSVSKS- 261

Query: 207 ERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           E +    D     +  A      ++ L +D ++  
Sbjct: 262 EGSCIHLDEVNHCMETASLLAPHILSLIRDAMAAH 296


>gi|74026302|ref|XP_829717.1| exosome-associated protein 2 [Trypanosoma brucei TREU927]
 gi|22797842|emb|CAD23610.1| exosome-associated protein 2 [Trypanosoma brucei]
 gi|70835103|gb|EAN80605.1| exosome-associated protein 2 [Trypanosoma brucei]
          Length = 294

 Score = 52.0 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 82/218 (37%), Gaps = 29/218 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEG---SCLVKFGDT-HLL-TTATLEEKVPMWIRNTKH 56
           RL GR  + +RE  + R  SK  +G   S L    +T   L  T +     P   +    
Sbjct: 28  RLDGRPLDALREPHILRD-SKGGDGLLASTLYTD-NTGMCLNCTVSGVFGPPPSDQ-PDE 84

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL----GSRQI 112
           G +T +       + +  +  A          E+ R +   + S +DL+ L    G    
Sbjct: 85  GRLTVDVAAPFFQSHSTDQVAAALR-------EVARFVRSTIISCMDLTELNIINGEACW 137

Query: 113 IIDCD--VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ--------VLKGHVA 162
           ++  +  ++ ADGG R AA+     A+H+ L       N  ++           +   + 
Sbjct: 138 VLQVELVILNADGGLRAAALHAVVAAIHNMLLPRSRLPNGDEVESRRLRFHTIPVAVTIG 197

Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIV 200
               G      ++D +  E+S +D     V++D   I+
Sbjct: 198 VYKLGASGVRFLMDTNAAEESVVDGLLTVVLSDENGII 235


>gi|324510452|gb|ADY44370.1| Exosome complex exonuclease RRP42 [Ascaris suum]
          Length = 303

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 87/279 (31%), Gaps = 48/279 (17%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP---MWIRNTKHG 57
           MR  GR     R I +   V     GS  V+   T LL     E  V       RN  + 
Sbjct: 21  MRADGRSLFDYRPIIVETGVLATTNGSARVRLASTDLLIGVKAELTVVEDFEHYRNRINF 80

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---------LRSVVDLSALG 108
           ++       P   G         G +   + E+   +  A         L+ ++ LS + 
Sbjct: 81  FVDCSANATPLFVG--------RGGED-LAVEVTSALDVAYDNPYVLPDLKKLI-LSPMH 130

Query: 109 SRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS---------NKFQLSQVLKG 159
           + ++ +D  +++  G    AA  G   AL +                  +    + V K 
Sbjct: 131 AWKLYVDIVILECGGNILDAAGIGVKAALRNTEICNVIVRPADEGKCAVDLANDNTVWKM 190

Query: 160 HVAA----ISCGMLCGYPIVDLDYGEDSTIDVDANF-------------VMTDSGHIVEV 202
            V+     +S   L    +VD    E++      +              ++ +   IV +
Sbjct: 191 DVSRAPLFVSVHKLGEANLVDASLTEEACSRCTVSVAVSPTPECSQDGTMLNEEDCIVTM 250

Query: 203 QGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
              +   +   D    M+ +    + +L K     +  E
Sbjct: 251 VRQSGGGSLEMDSLDEMVRMGVRMVDELQKALDKRLKEE 289


>gi|58259313|ref|XP_567069.1| Opa-interacting protein OIP2 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134107613|ref|XP_777691.1| hypothetical protein CNBA8110 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50260385|gb|EAL23044.1| hypothetical protein CNBA8110 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223206|gb|AAW41250.1| Opa-interacting protein OIP2, putative [Cryptococcus neoformans
           var. neoformans JEC21]
          Length = 297

 Score = 51.6 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 48/149 (32%), Gaps = 32/149 (21%)

Query: 2   RLSGR------------------QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL 43
           R  GR                   ++  R++S+       A GS LV+ GDT ++     
Sbjct: 46  RPDGRPILPSSSFQSTASASASAADDVWRQVSINTGSISTAHGSALVRMGDTTMVCGVKA 105

Query: 44  EEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL--RSV 101
           E   P        G++     +   S+          G  G  +Q     +   L     
Sbjct: 106 EVGEPD-AEAPGEGFVVPNIDLPALSSPK-----FKPGPPGDEAQTYSNWLYELLVSSKT 159

Query: 102 VDLSAL----GSRQIIIDCDV--IQADGG 124
           + LS+L    G    ++  DV  I  DG 
Sbjct: 160 IPLSSLLIAPGKAAWVLYIDVVCINYDGN 188


>gi|218670439|ref|ZP_03520110.1| ribonuclease PH [Rhizobium etli GR56]
          Length = 61

 Score = 51.6 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/37 (54%), Positives = 27/37 (72%)

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEV 202
           CG+     ++DLDY EDS+ + DANFVMT +G IVE+
Sbjct: 9   CGVFASQAVIDLDYLEDSSAETDANFVMTGAGGIVEI 45


>gi|221484017|gb|EEE22321.1| exosome complex exonuclease, putative [Toxoplasma gondii GT1]
 gi|221505289|gb|EEE30943.1| exosome complex exonuclease, putative [Toxoplasma gondii VEG]
          Length = 291

 Score = 51.6 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 10/152 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR   ++R   +          S +V+  +  +L   +++   P    +    ++T
Sbjct: 56  VREDGRACVEVRPSQVETFALPKCSASAIVRSSENTVLCGVSMQLARPTAAPDEGEVFLT 115

Query: 61  AEYGMLPRSTGNRVKREAVS---GRQGGRSQEIQRMIGRALRSVVDLSAL---GSRQII- 113
            +        G        S   G     S  +Q ++   + S VD   L     + I  
Sbjct: 116 VDCSAALGVGGVGGGVALESFGLGEGSSNSS-LQALLSDMVLSAVDKKKLCLVPGKLIWR 174

Query: 114 --IDCDVIQADGGTRTAAITGAWVALHDCLQH 143
             +DC V++A G    A       AL   +  
Sbjct: 175 VFVDCMVLKAGGCLLDAVSLAVHAALRTTVLP 206


>gi|237836521|ref|XP_002367558.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
 gi|211965222|gb|EEB00418.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
          Length = 297

 Score = 51.6 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 10/152 (6%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR   ++R   +          S +V+  +  +L   +++   P    +    ++T
Sbjct: 62  VREDGRACVEVRPSQVETFALPKCSASAIVRSSENTVLCGVSMQLARPTAAPDEGEVFLT 121

Query: 61  AEYGMLPRSTGNRVKREAVS---GRQGGRSQEIQRMIGRALRSVVDLSAL---GSRQII- 113
            +        G        S   G     S  +Q ++   + S VD   L     + I  
Sbjct: 122 VDCSAALGVGGVGGGVALESFGLGEGSSNSS-LQALLSDMVLSAVDKKKLCLVPGKLIWR 180

Query: 114 --IDCDVIQADGGTRTAAITGAWVALHDCLQH 143
             +DC V++A G    A       AL   +  
Sbjct: 181 VFVDCMVLKAGGCLLDAVSLAVHAALRTTVLP 212


>gi|156089789|ref|XP_001612301.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154799555|gb|EDO08733.1| conserved hypothetical protein [Babesia bovis]
          Length = 196

 Score = 51.6 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 41/135 (30%), Gaps = 19/135 (14%)

Query: 18  RRVSKYAEGSCLVKFGDTHLLTTATLEEK-VPMWIRNTKHGWITAEYGM--LPRSTGNRV 74
             +S  A GS  +  GDT +     +        ++      I   Y    +P S+   +
Sbjct: 1   MGISYSASGSSYITLGDTMVKACVNVPRPCGKRLLQEVGILSIEVRYSKPHIPSSSDADL 60

Query: 75  KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
           +                 ++       V LS    + I     + +  GG   A +T   
Sbjct: 61  RH----------------VLTELFERHVILSRYPRQLIEAWVTIEEDAGGLFGACVTALS 104

Query: 135 VALHDCLQHMEDCSN 149
           +A  DC   M D   
Sbjct: 105 LAFADCGIQMLDILA 119


>gi|258572452|ref|XP_002544988.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237905258|gb|EEP79659.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 1117

 Score = 51.6 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 17/80 (21%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R++GR E Q R +++      +A GS +V+ GD   +     E      +P W  ++  
Sbjct: 773 VRINGRTEFQFRPVTVNTGSLTHANGSAVVRIGDMTAVCAVRGEILSTNDIPAWKVSSG- 831

Query: 57  GWITAEYGMLPRSTGNRVKR 76
                       ST +R K+
Sbjct: 832 ------------STEDRNKK 839


>gi|296423271|ref|XP_002841178.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637413|emb|CAZ85369.1| unnamed protein product [Tuber melanosporum]
          Length = 330

 Score = 51.6 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 51/176 (28%), Gaps = 42/176 (23%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----------------E 45
           R SGR  +  R  SL      +A GS +V+ GDT ++     E                 
Sbjct: 42  RPSGRNPDTFRTPSLHTNSLSHAHGSAVVRTGDTAVVCGVRGEVLSLAAGTGGRIVVLRT 101

Query: 46  KVPMWIRN--------TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQ-----R 92
                 +N         + G +     M     G    R+   G     +Q +       
Sbjct: 102 GEDGRGKNGEGEGDEVRERGLVVTNLEM-----GTGCSRDYHPGPPTDFAQAVTARLHRL 156

Query: 93  MIGRALRSVVDLSALGSRQ--------IIIDCDVIQADGGTRTAAITGAWVALHDC 140
           ++   L S   L  L            + ID  VI  DG    AA      AL   
Sbjct: 157 LLSNKLISSQSLRILDPNTEEVKAYWVLYIDAVVISLDGNVLDAAWASILAALRST 212


>gi|226485759|emb|CAX75299.1| Exosome complex exonuclease MTR3 [Schistosoma japonicum]
 gi|226485761|emb|CAX75300.1| Exosome complex exonuclease MTR3 [Schistosoma japonicum]
          Length = 240

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 26/148 (17%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
            SL        +GS  ++ G+  +  +       P  +R            ML  +    
Sbjct: 36  FSLETNPIT--DGSAYLEMGEIKVACSVNG----PTEMRQDSQLVT-----MLKFA---- 80

Query: 74  VKREAVSGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQ------AD--G 123
               +   +    S E  + R++  A+   + L      +  I  +++       A   G
Sbjct: 81  -PFLSWLPKDIQASMERKLSRLLLTAIEPAIMLHHFPRGKYEIVTNILDIPAHNSAGLIG 139

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKF 151
               AAIT A +AL +    M D     
Sbjct: 140 DCLAAAITCAGLALLNSGVQMYDLLVGL 167


>gi|226485757|emb|CAX75298.1| Exosome complex exonuclease MTR3 [Schistosoma japonicum]
 gi|226485763|emb|CAX75301.1| Exosome complex exonuclease MTR3 [Schistosoma japonicum]
          Length = 240

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 26/148 (17%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
            SL        +GS  ++ G+  +  +       P  +R            ML  +    
Sbjct: 36  FSLETNPIT--DGSAYLEMGEIKVACSVNG----PTEMRQDSQLVT-----MLKFA---- 80

Query: 74  VKREAVSGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQ------AD--G 123
               +   +    S E  + R++  A+   + L      +  I  +++       A   G
Sbjct: 81  -PFLSWLPKDIQASMERKLSRLLLTAIEPAIMLHHFPRGKYEIVTNILDIPAHNSAGLIG 139

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKF 151
               AAIT A +AL +    M D     
Sbjct: 140 DCLAAAITCAGLALLNSGVQMYDLLVGL 167


>gi|56757493|gb|AAW26913.1| SJCHGC05910 protein [Schistosoma japonicum]
          Length = 240

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 26/148 (17%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
            SL        +GS  ++ G+  +  +       P  +R            ML  +    
Sbjct: 36  FSLETNPIT--DGSAYLEMGEIKVACSVNG----PTEMRQDSQLVT-----MLKFA---- 80

Query: 74  VKREAVSGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQ------AD--G 123
               +   +    S E  + R++  A+   + L      +  I  +++       A   G
Sbjct: 81  -PFLSWLPKDIQASMERKLSRLLLTAIEPAIMLHHFPRGKYEIVTNILDIPAHNSAGLIG 139

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKF 151
               AAIT A +AL +    M D     
Sbjct: 140 DCLAAAITCAGLALLNSGVQMYDLLVGL 167


>gi|171185942|ref|YP_001794861.1| exosome complex exonuclease Rrp41 [Thermoproteus neutrophilus
          V24Sta]
 gi|170935154|gb|ACB40415.1| exosome complex exonuclease Rrp41 [Thermoproteus neutrophilus
          V24Sta]
          Length = 50

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLV 30
          +R  GR  +QMRE+ ++  V   A+GS +V
Sbjct: 13 VRADGRAPDQMREVQISVGVISNADGSAMV 42


>gi|50552404|ref|XP_503612.1| YALI0E06039p [Yarrowia lipolytica]
 gi|49649481|emb|CAG79193.1| YALI0E06039p [Yarrowia lipolytica]
          Length = 262

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 68/243 (27%), Gaps = 31/243 (12%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLP------ 67
           I +   V + A GS  ++  D  ++         PM    T    +  +   LP      
Sbjct: 36  IFVKTGVVENANGSAYLELDDIKIVAIVHGPR--PMRGLFTTSAILNVDTKFLPVSLCDI 93

Query: 68  -------RSTG-NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
                   ST   +  R A + +     + +   +  +L   + +       I +   V+
Sbjct: 94  ESKSAVVSSTQLTQYIRSASTTQSSSLQKNVSSYVHTSLLPSILVEKYPKSTIDVSISVL 153

Query: 120 QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDY 179
            +   T+T                    +            V A S  +      V    
Sbjct: 154 SSSNNTKTT----------VAAAVSCAGAALADSGLECTDIVTAGSVLLDENKATVSPSR 203

Query: 180 GEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
               T ++D     M  S  IV      E    S+     + +  ++   ++  +   V+
Sbjct: 204 A--PTSEIDGVVSYMAASKKIVG--MWIEGGNVSEKQMEEIFDKTEEMAREIRGVMHGVL 259

Query: 239 SNE 241
             +
Sbjct: 260 LEQ 262


>gi|46108418|ref|XP_381267.1| hypothetical protein FG01091.1 [Gibberella zeae PH-1]
          Length = 250

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 64/220 (29%), Gaps = 21/220 (9%)

Query: 15  SLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74
           +    +   ++GS    +G   ++       +      N     +              +
Sbjct: 8   TAEISLLAKSDGSATFSYGGYAVIAAVNGPVEAQRRDENAFEALVDV------------I 55

Query: 75  KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT-AAITGA 133
            R A  G  G R ++++ ++  ALR ++ +       I I   V +        A I  A
Sbjct: 56  VRPAA-GVGGTRERQLESIMQAALRQLIPVRDYPRSVIQITLQVAETPENAYVNAKIVQA 114

Query: 134 WVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY----PIVDLDYGEDSTIDVDA 189
            + L      +         + +    + A +   +        IVD    +        
Sbjct: 115 QLNLPIIPALLHSAILGLLSAAIPLKTIGAATLIAVPEEEGKDIIVDPSAVDIDRAKSVH 174

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               T    ++    S     F+ D +  +L L +    +
Sbjct: 175 ALAFTSHDELLL---SESEGAFTPDEWTKVLQLGQRVCCE 211


>gi|302505236|ref|XP_003014839.1| hypothetical protein ARB_07400 [Arthroderma benhamiae CBS 112371]
 gi|291178145|gb|EFE33936.1| hypothetical protein ARB_07400 [Arthroderma benhamiae CBS 112371]
          Length = 293

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 81/279 (29%), Gaps = 58/279 (20%)

Query: 14  ISLTRRVSKYAEGSCLVKF-------GDT--------HLLTTATLEEKVPMWIRNTKHGW 58
           + L   V   A GS   +        G +         L+ +    + +      + +  
Sbjct: 6   LDLKTGVIPSASGSAYFELHPSNSSSGGSLIPPSSSLKLICSVNGPKPLSRSTPFSPNLL 65

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           ++A     P +     +R A       R  ++   +  ALR  +         + I   +
Sbjct: 66  LSAHVKFAPFAN---RRRRAHVRDMNER--DLGVHLENALRGAIIGDRWPKSGLDITIMI 120

Query: 119 IQ------------------ADG----GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV 156
           ++                  +DG          +T A  A+ D      D       + V
Sbjct: 121 LEGEDDRWWGDMSTAETLTGSDGWGMMNVLAHCVTVASAAIADARIDCLDLVAGGVAAVV 180

Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF-VMTDSGHIVE------VQGSAERA 209
                +           ++D D  E   I        M     I E      + G++   
Sbjct: 181 GTCS-SGEGATSSTKTVVLDPDPSEHLNISSSCVVGYMPSLDEITELWLKGDMPGASSDG 239

Query: 210 TF-SQDH---FFAMLNLAKDRIADLIKLQKD----VISN 240
           T+ S++H       +  AK   + LI+  K+     ISN
Sbjct: 240 TYDSRNHDALMGGAIAAAKASHSVLIEAVKESAVQAISN 278


>gi|261335755|emb|CBH18749.1| exosome-associated protein 2, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 294

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 82/218 (37%), Gaps = 29/218 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEG---SCLVKFGDT-HLL-TTATLEEKVPMWIRNTKH 56
           RL GR  + +RE  + R  SK  +G   S L    +T   L  T +     P   +    
Sbjct: 28  RLDGRPLDALREPHILRD-SKGGDGLLASTLYTD-NTGTCLNCTVSGVFGPPPSDQ-PDE 84

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL----GSRQI 112
           G +T +       + +  +  A          E+ R +   + S +DL+ L    G    
Sbjct: 85  GRLTVDVAAPFFQSHSTDQVAAALR-------EVARFVRSTIISCMDLTELNIINGEACW 137

Query: 113 IIDCD--VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ--------VLKGHVA 162
           ++  +  ++ ADGG R AA+     A+H+ L       +  ++           +   + 
Sbjct: 138 VLQVELVILNADGGLRAAALHAVVAAIHNMLLPRSRLPSGDEVESRRLRFHTIPVAVTIG 197

Query: 163 AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIV 200
               G      ++D +  E+S +D     V++D   I+
Sbjct: 198 VYKLGASGVRFLMDTNAAEESVVDGLLTVVLSDENGII 235


>gi|145476653|ref|XP_001424349.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391413|emb|CAK56951.1| unnamed protein product [Paramecium tetraurelia]
          Length = 299

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 17/135 (12%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q R I         + G+  +  G+T +  T +     P  IR    G++  
Sbjct: 15  RIDGRDPLQQRMIQCHFG--PQSTGAVELSLGETRVFATTSASITTPNPIR-PSEGFLKF 71

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGS------RQII 113
              +        +      G       EI++ I + ++    +D  +L          I 
Sbjct: 72  HLDLQVLRDTGYMHNPIKLG------MEIEKYIEKVIKGSKALDTESLCILSGKNVWSID 125

Query: 114 IDCDVIQADGGTRTA 128
           ++  +I  DG    A
Sbjct: 126 VNVALINNDGNLLDA 140


>gi|289740849|gb|ADD19172.1| exosomal 3'-5' exoribonuclease complex subunit Rrp45 [Glossina
           morsitans morsitans]
          Length = 320

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 58/184 (31%), Gaps = 21/184 (11%)

Query: 78  AVSGRQGGRSQEIQRMIGRALR--SVVDLSALG----SR--QIIIDCDVIQADGGTRTAA 129
             +GR    + +I R + R  +    +DL +L      R   + +D +V+  +G      
Sbjct: 6   FEAGRNCELTVQINRTLERTFKDSRAIDLESLCVISDERVWMLRVDLNVLNHEGNLIDCC 65

Query: 130 ITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAAISCGMLCGY--PIVDL 177
                 AL    +           +   + K  L  V+  +   +S  +  G    I D 
Sbjct: 66  SVATLCALAHFRRPDVSVIEDEIRIHTSAEKEPLKMVMHHYPVCVSYVVFDGGRIAIADP 125

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              E+ T D    F +   G +  +       T S          A      ++   K  
Sbjct: 126 TVAEERTSDTQMIFGINSFGELCCLNLGGSSLT-SPTLLLQCSKKAAKHAKSVVNQVKKS 184

Query: 238 ISNE 241
           + N+
Sbjct: 185 LEND 188


>gi|12848640|dbj|BAB28033.1| unnamed protein product [Mus musculus]
          Length = 283

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 23/187 (12%)

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID 115
            G +  ++   P S   R +R    G  GG  +E+   +  AL   V L      Q+ + 
Sbjct: 103 RGRLLCDFRRAPFS--GRRRRAPQGG--GGEDRELGLALQEALEPAVRLGRYPRAQLEVS 158

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---Y 172
             +++ DGG                                +   V      +  G    
Sbjct: 159 ALLLE-DGG------------CALAAALTAAALALADAGVEMYDLVVGCGLSLTPGPSPT 205

Query: 173 PIVDLD-YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI 231
            ++D     E+ +       +M     +  + GS E      + +   + L  +    L 
Sbjct: 206 WLLDPTRLEEEHSAAGLTVALMPVLNQVAGLLGSGEGGQ--TESWTDAVRLGLEGCQRLY 263

Query: 232 KLQKDVI 238
            + +  +
Sbjct: 264 PVLQQCL 270


>gi|299755052|ref|XP_002912058.1| hypothetical protein CC1G_13591 [Coprinopsis cinerea okayama7#130]
 gi|298411047|gb|EFI28564.1| hypothetical protein CC1G_13591 [Coprinopsis cinerea okayama7#130]
          Length = 189

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 40/110 (36%), Gaps = 11/110 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR   QMR+  +T        G      G T ++     +  V         G IT
Sbjct: 22  LRLDGRLPLQMRDPVITFGPE---LGYVECALGKTRVIANVEAK-MVKPTPERPFEGIIT 77

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL-RS-VVDLSALG 108
               + P ++      E   GR       I RM+ + L RS  VD  +L 
Sbjct: 78  IHSEISPMASS-----EYEPGRPSEEEVTITRMLDKVLKRSDAVDKESLC 122


>gi|146414860|ref|XP_001483400.1| hypothetical protein PGUG_04129 [Meyerozyma guilliermondii ATCC
           6260]
 gi|146391873|gb|EDK40031.1| hypothetical protein PGUG_04129 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 221

 Score = 50.9 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 82/243 (33%), Gaps = 50/243 (20%)

Query: 16  LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           L+  +    +GS  +  G T ++ + T   +  +             + +  +S+   + 
Sbjct: 5   LSTSILTKVDGSSQLTVGGTKVVVSVTGPIEPKL------------RHELPTQSSFEIII 52

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI-------QADGGTRTA 128
           R AV G    R + ++  +   L++V+       + I I    +              +A
Sbjct: 53  RPAV-GVSSTREKLMEDKLLSLLQNVIARFQNPRQLIQIVIQFLITEPIPNHYTNSQLSA 111

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL-----DYGED- 182
           A    + AL D              +  L    AA+   +     I +         E  
Sbjct: 112 AANACYYALIDA-------------NVPLLCSFAAVPIAIYKNEIIANPAPQVITESESN 158

Query: 183 ---STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
                   DA     DS  +VE QGS     F+ +  F +L++A+     + + Q+  + 
Sbjct: 159 HVVCYGIHDAKA---DSLLLVESQGS-----FTSEQLFKVLDIAQKECESVHQEQRTYLQ 210

Query: 240 NEV 242
            +V
Sbjct: 211 EKV 213


>gi|322822226|gb|EFZ28345.1| exosome-associated protein 2, putative [Trypanosoma cruzi]
          Length = 278

 Score = 50.9 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 83/224 (37%), Gaps = 39/224 (17%)

Query: 2   RLSGRQENQMR----------EISLTRRVSKYAEGSCLVK--FGDTHLLTTATLEEKVPM 49
           RL GR  + +R          +  + R V      S L     G T +    T     P 
Sbjct: 28  RLDGRAFDSIRVPHILYENRQDTKINR-VLA----STLYTDDTG-TCVNCIVTGVFGPPP 81

Query: 50  WIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL-- 107
             ++ + G +T E    P   G    +        G   E+ R +   + S +DL+ L  
Sbjct: 82  -PKHPEEGRLTVEVT-APFFPGYSAFQ------IEGTLHELARFVRSTIISCLDLTELCV 133

Query: 108 --GSRQIIIDCD--VIQADGGTRTAAITGAWVALHD-CLQHMEDCSNKFQLSQVLKGH-- 160
             G    ++  +  V+ ADGG R A +  A  ALH+  L      S     S+ L  H  
Sbjct: 134 ISGEACWVLRVELIVMNADGGLRAATLHAAVAALHNLTLPKARLPSGDVVESKCLCFHRI 193

Query: 161 VAAISCGMLCG----YPIVDLDYGEDSTIDVDANFVMTDSGHIV 200
             A + G+         ++D +  E+S  DV    V+ ++  IV
Sbjct: 194 PVAATIGLCGTADSMQFLLDTNAAEESVADVLLTVVIDEADGIV 237


>gi|302667970|ref|XP_003025563.1| hypothetical protein TRV_00203 [Trichophyton verrucosum HKI 0517]
 gi|291189678|gb|EFE44952.1| hypothetical protein TRV_00203 [Trichophyton verrucosum HKI 0517]
          Length = 304

 Score = 50.9 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 71/271 (26%), Gaps = 54/271 (19%)

Query: 14  ISLTRRVSKYAEGSCLVKF-------GDT--------HLLTTATLEEKVPMWIRNTKHGW 58
           + L   V   A GS   +        G +         L+ +    + +      + +  
Sbjct: 17  LDLKTGVIPSASGSAYFELHPSNSSSGGSLIPPSSSLKLICSVNGPKPLSRSTPFSPNLL 76

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           ++A     P +     +R A       R  ++   +  ALR  +         + I   +
Sbjct: 77  LSAHVKFAPFAN---RRRRAHVRDMNER--DLGVHLENALRGAIIGDRWPKSGLDITIMI 131

Query: 119 IQ------------------ADG----GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV 156
           ++                  +DG          +T A  A+ D      D       + V
Sbjct: 132 LEGEDDRWWGDMSTAETLTGSDGWGMMNVLAHCVTVASAAIADARIDCLDLVAGGVAAVV 191

Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF-VMTDSGHIVEVQGSAE-------- 207
                +           ++D D  E   I        M     I E+    +        
Sbjct: 192 DTCS-SGEGATSSTKTVVLDPDPSEHLNISSSCVVGYMPSLDEITELWLKGDMPGASSDG 250

Query: 208 --RATFSQDHFFAMLNLAKDRIADLIKLQKD 236
              +          +  AK   + LI+  K+
Sbjct: 251 TYDSPNHDALMGGAIAAAKASHSVLIEAVKE 281


>gi|148927324|ref|ZP_01810889.1| Polyribonucleotide nucleotidyltransferase [candidate division TM7
           genomosp. GTL1]
 gi|147887280|gb|EDK72739.1| Polyribonucleotide nucleotidyltransferase [candidate division TM7
           genomosp. GTL1]
          Length = 264

 Score = 50.9 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 19/126 (15%)

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML---CGYPIV-- 175
           ++G T  A++    +++ D                 +K  V+ I+ G+     G  I+  
Sbjct: 3   SNGSTSMASVCSGILSMMDAGV-------------PIKAPVSGIAMGLATDGNGKAIILS 49

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235
           D+   ED   D+D   V T  G I  +Q   +    S D     L  AK   A +++   
Sbjct: 50  DIQGIEDFAGDMDFKVVGTTRG-ITALQMDIKVKGISPDLMAKALQQAKTGRAKILEHML 108

Query: 236 DVISNE 241
             +   
Sbjct: 109 STLPEP 114


>gi|58268300|ref|XP_571306.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134113196|ref|XP_774623.1| hypothetical protein CNBF3030 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257267|gb|EAL19976.1| hypothetical protein CNBF3030 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57227541|gb|AAW43999.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 332

 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 11/144 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE--EKVPMWIRNTKHGWI 59
           R   R     R I ++  V   A GS  VK G+T ++    LE  +     I++ +    
Sbjct: 28  RNDARPLFASRPIQISYGVFPQANGSSQVKLGETEVVCGIKLEVIDITGQQIKDQEKWRT 87

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVD-LSALGSR---QIIID 115
             E  + P++  +       +      S  +  ++       +  L  L ++   Q  + 
Sbjct: 88  KVEVDVTPQAFPS-----ISAPSLSALSTHLTSIVTSHFIPSIPALPILPNKKYFQPHLH 142

Query: 116 CDVIQADGGTRTAAITGAWVALHD 139
             V+ + G   +A I  A  A  D
Sbjct: 143 LTVLSSSGNIPSALILAARAAFAD 166


>gi|119181425|ref|XP_001241926.1| hypothetical protein CIMG_05822 [Coccidioides immitis RS]
          Length = 410

 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWI---RN 53
           +R++GR E+Q R  S+      +  GS +V+ GDT  +     E      +P W      
Sbjct: 49  IRINGRTESQFRPASVNTGSLSHTNGSAVVRIGDTTAVCGVRGEILSTHDIPAWKVSNNG 108

Query: 54  TKHGW 58
               W
Sbjct: 109 AGSSW 113


>gi|303318537|ref|XP_003069268.1| exosome complex exonuclease rrp43, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240108954|gb|EER27123.1| exosome complex exonuclease rrp43, putative [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 410

 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWI---RN 53
           +R++GR E+Q R  S+      +  GS +V+ GDT  +     E      +P W      
Sbjct: 49  IRINGRSESQFRPASVNTGSLSHTNGSAVVRIGDTTAVCGVRGEILSTHDIPAWKVSNNG 108

Query: 54  TKHGW 58
               W
Sbjct: 109 AGSSW 113


>gi|320581846|gb|EFW96065.1| hypothetical protein HPODL_2348 [Pichia angusta DL-1]
          Length = 292

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 82/285 (28%), Gaps = 65/285 (22%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGS--CL----VKFGDTHLLTTATLEEKVPMWIRNTK 55
           R   R+ N+ R +           GS        ++          +++ KV      ++
Sbjct: 22  RTDSRKTNEFRPLKAVCSFVPNCNGSSRVYNPDGIE-------CITSVKAKVIRTKDISE 74

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL-----GSR 110
              +  +        G R                +  MI RAL +  D   L        
Sbjct: 75  LINVDVDVE------GQRDN--------STLCLNLSAMIQRALVNNFDFEVLRLTDKYYF 120

Query: 111 QIIIDCDVIQADGGTRTAAIT----------GAWVALHDCLQHME--------------- 145
           Q+ +D  V+   G  + ++ T          G ++AL      +                
Sbjct: 121 QLYVDILVLSVPGDFKNSSYTLYSLLSLISMGTYLALKSAKLPLLTSTTNDREIEEEPSF 180

Query: 146 ----DCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVE 201
               + S     +      +     G++    +VD    E+  ++            +  
Sbjct: 181 ADDWELSTNLIPADSKFQPMLIFVVGLVGSNVLVDPSLDEEEVLESGLCIGYCQGNIVAP 240

Query: 202 VQG----SAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           +Q     +A+   F++      L   K     +++  + +++ EV
Sbjct: 241 IQSVALSTADGQAFNRKTLNKALETVKQIGQPVVEALESILNTEV 285


>gi|156839667|ref|XP_001643522.1| hypothetical protein Kpol_473p23 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114136|gb|EDO15664.1| hypothetical protein Kpol_473p23 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 223

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 72/236 (30%), Gaps = 38/236 (16%)

Query: 19  RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREA 78
            +    +GS  V+  DT ++   T   +            +              + R A
Sbjct: 8   GLLTEVDGSSQVECEDTKVICAVTGPIEPKARQELPTQLAL------------EIIVRPA 55

Query: 79  VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR-------TAAIT 131
             G    R + ++  +   +  +V L     +   I C ++++            +  I 
Sbjct: 56  -KGVPSTREKLMEDRLRSVITPIVSLYQYPRKLCQITCQILESGESEYEFSQKELSCCIN 114

Query: 132 GAWVALHDCLQHMEDCS-----NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTID 186
              +AL D    +   +        + S  +  +             ++ L   E S   
Sbjct: 115 ATLLALIDSGLALNSIASSVSMAILKGSDDVIINPTNSQLLQSQSVHVLALQLIEGSR-- 172

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                      +++ +  S +   F++   F +L + +    +L    + +I ++V
Sbjct: 173 --------KVKNVLFLDSSGD---FTEQQLFNVLEIGEKSCLELGLTLRSIIESKV 217


>gi|68066783|ref|XP_675365.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56494511|emb|CAH99589.1| hypothetical protein PB107493.00.0 [Plasmodium berghei]
          Length = 71

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 23/38 (60%)

Query: 2  RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT 39
          R++ R+ N++R++ +    + Y++ SC    G+T +L 
Sbjct: 32 RINNRKNNEIRDMFIKLGENGYSDASCFYSLGNTKILC 69


>gi|320036145|gb|EFW18084.1| 3' exoribonuclease [Coccidioides posadasii str. Silveira]
          Length = 410

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWI---RN 53
           +R++GR E+Q R  S+      +  GS +V+ GDT  +     E      +P W      
Sbjct: 49  IRINGRSESQFRPASVNTGSLSHTNGSAVVRIGDTTAVCGVRGEILSTHDIPAWKVSNNG 108

Query: 54  TKHGW 58
               W
Sbjct: 109 AGSSW 113


>gi|315046942|ref|XP_003172846.1| 3' exoribonuclease [Arthroderma gypseum CBS 118893]
 gi|311343232|gb|EFR02435.1| 3' exoribonuclease [Arthroderma gypseum CBS 118893]
          Length = 369

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 82/284 (28%), Gaps = 64/284 (22%)

Query: 6   RQENQMREISLTRRVSKYAEGSCLVKF----GDT-----------HLLTTATLEEKVPMW 50
           R   ++R+I L   V   A GS   +      +T            L+ +    + +   
Sbjct: 74  RDAKELRKIYLKTGVIPSASGSAYFELHPSNSNTSGSLIPPSSSLKLICSVNGPKPLSRS 133

Query: 51  IRNTKHGWITAEY-----GMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105
              + +  ++A           R    R   E   G            +  ALR  +   
Sbjct: 134 TPFSPNLLLSAHVKFAPFAARRRRAHVRDMNERDLG----------VHLENALRGAIIGD 183

Query: 106 ALGSRQIIIDCDVIQ------------------ADG----GTRTAAITGAWVALHDCLQH 143
                 + I   +++                  +DG          +T A  A+ D    
Sbjct: 184 RWPKSGLDITIMILEGEDDRWWGDMSTAETLTGSDGWGMMNILAHCVTVASAAIADARID 243

Query: 144 MEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF-VMTDSGHIVE- 201
             D       + V++   +A          ++D D  E S I        M     I E 
Sbjct: 244 CLDLVAGGVAA-VVEPSSSAEGATTSTKMVVLDPDPSEHSNISSACVVGYMPSLDEITEL 302

Query: 202 -----VQGSAERATFSQDHFFAMLNLAKDRIAD----LIKLQKD 236
                + G++   T++  +  A+++ A          LI+  K+
Sbjct: 303 WLKGDMAGASADGTYASPNHDALMDGAIAAARASHSVLIEAVKE 346


>gi|109129258|ref|XP_001101736.1| PREDICTED: exosome complex exonuclease MTR3-like [Macaca mulatta]
          Length = 185

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 6  RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT 40
          R   ++R +     +   A+GS  ++ G T +L  
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCA 65


>gi|302420353|ref|XP_003008007.1| exosome complex exonuclease RRP43 [Verticillium albo-atrum
          VaMs.102]
 gi|261353658|gb|EEY16086.1| exosome complex exonuclease RRP43 [Verticillium albo-atrum
          VaMs.102]
          Length = 340

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 2  RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
          R +GR  ++ R  ++      +A GS LV+ GD  ++     E
Sbjct: 38 RSNGRAPHEARTPNINTSTLTHAHGSALVRIGDNTVICGIRGE 80


>gi|255722417|ref|XP_002546143.1| hypothetical protein CTRG_00925 [Candida tropicalis MYA-3404]
 gi|240136632|gb|EER36185.1| hypothetical protein CTRG_00925 [Candida tropicalis MYA-3404]
          Length = 288

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 65/229 (28%), Gaps = 32/229 (13%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V   A GS  ++  +T +  +       P+         ++ E   LP  +         
Sbjct: 44  VITNANGSAYLEINNTIIEVSIFGPR--PIRGSFIDRATLSIECKFLPHISPQPQSNIFN 101

Query: 80  SGRQGGRS------QEIQRMIGRALRSVVDLSALGSRQIIIDCDVI--------QADG-- 123
            G +  R+       ++   +       + L       I I   +I          DG  
Sbjct: 102 DGSKNIRTGMTNVEHKLSNYLESCFLPCLVLEKYPKSTIDIQVSIISVDKEMLNDDDGRT 161

Query: 124 GTRTAAIT--------GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
               +++            +AL D    M D  +  Q+     G V     G        
Sbjct: 162 NNDNSSLLWLCQWMVCCCSLALVDSGIEMRDIVSSGQVRYTKSGKVLINPIGNTTNEKE- 220

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEV---QGSAERATFSQDHFFAMLN 221
             +  E+  +D   +F+   +  IV +       E+    +     ++ 
Sbjct: 221 --EDDEEEGVDALVSFMNLKNDEIVGIWFESNDDEKVPLDESQMEKLIE 267


>gi|240273287|gb|EER36808.1| 3' exoribonuclease [Ajellomyces capsulatus H143]
          Length = 367

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
           +R++GR  +Q R +S+      +   S +V+ GDT  +     E
Sbjct: 59  LRVNGRVPSQFRPVSINTGSLTHTNASAVVRIGDTVAVCGVRGE 102


>gi|322829666|gb|EFZ32975.1| ribosomal RNA processing protein 45, putative [Trypanosoma cruzi]
          Length = 334

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 83/275 (30%), Gaps = 44/275 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   Q+RE+++   +    + SC V+ G T +       E V  +    KHG I 
Sbjct: 32  LRPDQRGAQQLREVNVDFPLLSR-DVSC-VRCGGTIVTAAI-ACELVEPFPYRPKHGIID 88

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL----GSR--QIII 114
                 P +  +   + A   +    +  ++R+I      VVD   L    G R   I +
Sbjct: 89  FSVRQ-PYTERDSSAKTAELKKL---TAFLERLIKGG--GVVDTEGLCVLPGRRVWSISV 142

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL--------SQVLKGHVAAISC 166
           D  V+  +G     A+      L    +          +           L  H   +S 
Sbjct: 143 DVTVLNDEGNVTDVAVWATVAVLLHYRRPELTIRGDSVILHPTHERDPVPLSIHHTPLSF 202

Query: 167 GMLCG--------------------YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
                                      +VD  + E +         +   G +  V  S 
Sbjct: 203 SFAITMAPGDRNKLARGRRDSQEALEVVVDPTFAEATAASSSVVVAVNAEGQVCSVSKS- 261

Query: 207 ERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           E +    +     +  A      ++ L +D ++  
Sbjct: 262 EGSCIHLNEVNHCMETAFLLAPHILSLIRDAMAAH 296


>gi|153876840|ref|ZP_02003956.1| polyribonucleotide nucleotidyltransferase [Beggiatoa sp. PS]
 gi|152066696|gb|EDN66044.1| polyribonucleotide nucleotidyltransferase [Beggiatoa sp. PS]
          Length = 255

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 18/119 (15%)

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YPIVDLDYGED 182
            A++ G+ +AL D                 +K  VA I+ G++        + D+   ED
Sbjct: 1   MASVCGSSLALMDAGVQ-------------IKAPVAGIAMGLIKEDDQFVVLSDIMGDED 47

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
              D+D     T  G +  +Q   +    + +     L  AK+    ++ L    ++  
Sbjct: 48  HLGDMDFKVAGTTDG-VTALQMDIKIEGITSEIMETALAQAKEGRLHILSLMCQALAEP 105


>gi|256079799|ref|XP_002576172.1| exonuclease rrp45 [Schistosoma mansoni]
 gi|238661434|emb|CAZ32407.1| exosome complex exonuclease rrp45 (polymyositis/scleroderma
           autoantigen 1) (ribosomal rna processing protein 45),
           putative [Schistosoma mansoni]
          Length = 446

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 85/245 (34%), Gaps = 39/245 (15%)

Query: 26  GSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWITAEYGMLPRS-TGNRVKREAVSGRQ 83
           G C+VK G T ++   ++E   P   R +    ++  +  +L  S T  R ++    GR+
Sbjct: 20  GCCVVKIGATTVMAQVSVEVIEPKHFRPSQGMLFVHFDASILKLSKTLYRKQKRDDEGRR 79

Query: 84  GGRSQEIQRMIGRALRSVVDLSALG----SRQIIIDCDV--IQADGGTRTAAITGAW--- 134
                 +  ++   LR  +DL AL      R   +  ++  +  DG         A    
Sbjct: 80  ------LSAVLQTLLRDSIDLDALCIVAWERVFAVRVELRALSYDGNLGDCGTLAAVAAL 133

Query: 135 -------VALHDCLQHMEDCSNKFQLSQVL--KGHVAAISCGMLCG--YPIVDLDYGEDS 183
                  V + D  + + D   KF+    L  +     ++ G+       +VD    E+ 
Sbjct: 134 AAFRRPDVYVDDMGKVLVDFEAKFRPRVPLGIRRTPVLVTLGLTADAKVVLVDPTAREEL 193

Query: 184 TI-DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKL--------- 233
            +        +T++  I  +  +              ++LA  +   L+ L         
Sbjct: 194 ILTGGRVLLGLTNTSEICCLYTTGLSVPIQCSSLSRCIHLANSKAKSLVSLINWALEGLS 253

Query: 234 -QKDV 237
            Q++ 
Sbjct: 254 IQREA 258


>gi|238488533|ref|XP_002375504.1| 3' exoribonuclease family protein [Aspergillus flavus NRRL3357]
 gi|220697892|gb|EED54232.1| 3' exoribonuclease family protein [Aspergillus flavus NRRL3357]
          Length = 313

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 75/274 (27%), Gaps = 54/274 (19%)

Query: 12  REISLTRRVSKYAEGSCLVKF--------------------GDTHLLTTATLEEKVPMWI 51
           R   L   +   A GS  +++                        L  T    + +P   
Sbjct: 33  RPQLLKTGLIPSASGSAYLEYEPSASLAAARSSPKSLIPPSSALKLACTVHGPKPLPRSA 92

Query: 52  RNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ 111
             + +  +T      P +     KR+        R  ++   +  ALR V+         
Sbjct: 93  TFSPNLVLTTHIKYAPFAA---RKRKGHIRDASER--DLGVHLETALRGVIVAERWPKSG 147

Query: 112 IIIDCDVIQA-------DG-----------GTRTAAITGAWVALHDCLQHMEDCSNKFQL 153
           + I   +++A       D                  IT A  A+ D      D       
Sbjct: 148 LDITITILEAEDDRWWGDAPDSHDAPWGMMNVLAGCITAASAAISDARIDCLDLIAGGVA 207

Query: 154 SQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV-MTDSGHIVEV--QGSAERAT 210
           + V        +        ++D D  E   I        M+    I E+  +G + +A 
Sbjct: 208 AIVADESEDGEAKPK----LMLDTDPAEHKAILSACVVAYMSSRDEITEIWLKGDSSKAL 263

Query: 211 FSQDHF----FAMLNLAKDRIADLIKLQKDVISN 240
              D       A+L+ A D       +  + +  
Sbjct: 264 LGPDDKRSGHEALLDGAVDAARGAHSVLAEAVRE 297


>gi|225558044|gb|EEH06329.1| 3' exoribonuclease [Ajellomyces capsulatus G186AR]
          Length = 437

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
           +R++GR  +Q R +S+      +   S +V+ GDT  +     E
Sbjct: 59  LRVNGRVPSQFRPVSINTGSLTHTNASAVVRIGDTVAVCGVRGE 102


>gi|325095771|gb|EGC49081.1| 3' exoribonuclease [Ajellomyces capsulatus H88]
          Length = 421

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
           +R++GR  +Q R +S+      +   S +V+ GDT  +     E
Sbjct: 59  LRVNGRVPSQFRPVSINTGSLTHTNASAVVRIGDTVAVCGVRGE 102


>gi|71655894|ref|XP_816503.1| ribosomal RNA processing protein 45 [Trypanosoma cruzi strain CL
           Brener]
 gi|70881635|gb|EAN94652.1| ribosomal RNA processing protein 45, putative [Trypanosoma cruzi]
          Length = 334

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 83/275 (30%), Gaps = 44/275 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R   Q+RE+++   +    + SC V+ G T +       E V  +    KHG I 
Sbjct: 32  LRPDQRGAQQLREVNVDFPLLSR-DVSC-VRCGGTIVTAAI-ACELVEPFPCRPKHGIID 88

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL----GSR--QIII 114
                 P +  +   + A   +    +  ++R+I      VVD   L    G R   I +
Sbjct: 89  FSVRQ-PYTERDSSAKTAELKKL---TAFLERLIKGG--GVVDTEGLCVLPGRRVWSISV 142

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQL--------SQVLKGHVAAISC 166
           D  V+  +G     A+      L    +          +           L  H   +S 
Sbjct: 143 DVTVLNDEGNVTDVAVWATVAVLLHYRRPELTIRGDSVILHPTHERDPVPLSIHHTPLSF 202

Query: 167 GMLCG--------------------YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
                                      +VD  + E +         +   G +  V  S 
Sbjct: 203 SFAITMAPGDRNKLARGRRDSQEALEVVVDPTFAEATAASSSVVVAVNAEGQVCSVSKS- 261

Query: 207 ERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           E +    +     +  A      ++ L +D ++  
Sbjct: 262 EGSCIHLNEVNHCMETASLLAPHILSLIRDAMAAH 296


>gi|302654581|ref|XP_003019094.1| hypothetical protein TRV_06873 [Trichophyton verrucosum HKI 0517]
 gi|291182792|gb|EFE38449.1| hypothetical protein TRV_06873 [Trichophyton verrucosum HKI 0517]
          Length = 381

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
          +R  GR   Q R ++    +   A GS  + F D T  +     E +
Sbjct: 34 IRPDGRSATQFRPLTAETNIVPNANGSARIGFADGTQAIVGVKAEVE 80


>gi|154280581|ref|XP_001541103.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150411282|gb|EDN06670.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 440

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
           +R++GR  +Q R +S+      +   S +V+ GDT  +     E
Sbjct: 59  LRVNGRVPSQFRPVSINTGSLTHTNASAVVRIGDTVAVCGVRGE 102


>gi|303389534|ref|XP_003072999.1| RNase PH-like exoribonuclease [Encephalitozoon intestinalis ATCC
           50506]
 gi|303302143|gb|ADM11639.1| RNase PH-like exoribonuclease [Encephalitozoon intestinalis ATCC
           50506]
          Length = 223

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 69/226 (30%), Gaps = 42/226 (18%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR+  + R++ + +        SCL+  G + LL   + +     ++  +  G +  
Sbjct: 12  RFDGRKIKETRKLEVEK--ISN---SCLISMGKSRLLA-VSQKGISRPYVDKSHEGIVNF 65

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSR------QIIID 115
              M     G R +R      +          I +     +DL +L  +       I ID
Sbjct: 66  SISM----GGKRHERLVNFLHKV--------YIKQ---KSIDLESLCIKLNEEVVLIHID 110

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
             ++  DG   +  + G    L      M                    S   +    I 
Sbjct: 111 LRILSCDGSIYSLIVQGVNSVLETLGVKM-------------NYMPQCFSYCSIDNVVIT 157

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLN 221
           D    E    D +   VM     IV ++        S +  F  ++
Sbjct: 158 DPSENEQIEEDWNCVVVMKSPKEIVFLEKIGREC--SIEQVFETID 201


>gi|327303590|ref|XP_003236487.1| 3' exoribonuclease [Trichophyton rubrum CBS 118892]
 gi|326461829|gb|EGD87282.1| 3' exoribonuclease [Trichophyton rubrum CBS 118892]
          Length = 379

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
          +R  GR   Q R ++    +   A GS  + F D T  +     E +
Sbjct: 34 IRPDGRSATQFRPLTAETNIVPNANGSARIGFADGTQAIVGVKAEVE 80


>gi|156086764|ref|XP_001610789.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154798042|gb|EDO07221.1| hypothetical protein BBOV_IV008670 [Babesia bovis]
          Length = 250

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 76/256 (29%), Gaps = 52/256 (20%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-----------THLLTTATLEEKVPM 49
           +R  GR     R   +     +    SC +  GD           T +++          
Sbjct: 5   LRPDGRNLYDPRRFKVELNPLRTGP-SCRLTVGDSSPNSPVYRDRTSVISLIY------- 56

Query: 50  WIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS 109
           +  + K+      Y         R     V G    R  E   +  + ++S++D ++LG 
Sbjct: 57  FSADNKNRNTVGSYHRPTFEVYIRPAVGPVRGYI--RGYECMLL--KCMQSIIDGTSLGR 112

Query: 110 RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169
             +     +++   G     +    ++L      + +  +  Q           I+  + 
Sbjct: 113 VLVSARIQILEDGSGLLATCMNALIISLVVAALPLREIPHAIQFG---------ITKSLE 163

Query: 170 CGYPIVDLDYGEDSTIDVDANFVM---TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
               IV+    E+          M    +SG I  V                 ++  +  
Sbjct: 164 SDSVIVEPS-SEEIRTQCSTAVTMLCTPNSGSISFVS----------------IDYGRGG 206

Query: 227 IADLIKLQKDVISNEV 242
               ++ Q + +S ++
Sbjct: 207 YDANVQAQLEALSCKI 222


>gi|315050750|ref|XP_003174749.1| hypothetical protein MGYG_02279 [Arthroderma gypseum CBS 118893]
 gi|311340064|gb|EFQ99266.1| hypothetical protein MGYG_02279 [Arthroderma gypseum CBS 118893]
          Length = 379

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
          +R  GR   Q R ++    +   A GS  + F D T  +     E +
Sbjct: 34 IRPDGRSATQFRPLTAETNIVPNANGSARIGFADGTQAIVGVKAEVE 80


>gi|159481271|ref|XP_001698705.1| polyribonucleotide phosphorylase PNPase [Chlamydomonas reinhardtii]
 gi|158273599|gb|EDO99387.1| polyribonucleotide phosphorylase PNPase [Chlamydomonas reinhardtii]
          Length = 599

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 81/236 (34%), Gaps = 29/236 (12%)

Query: 13  EISLTRR-VSKYAEGSCLVKFGDTH----LLTTATLEEKVPMWIRNTKHGWITAEYGMLP 67
           EI L    + + A G+ +   G+T        +A+             +      +    
Sbjct: 96  EIKLETGEIGRQANGAIMATAGETMLYATACCSASPTGDGSFTPLTVNYAE---RFSAAG 152

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
           R++G  VKR+   GR       + R++ R +R +         QI+    V+  DG    
Sbjct: 153 RTSGGFVKRD---GRPRDAEVLVSRLVDRPIRPMFAKGWANDTQILE--WVLSYDG---- 203

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTID 186
                  V   + L      +        LK  VA +  GM   G  I++    E  T  
Sbjct: 204 -------VNDPEPLAITAAAAALLISDIPLKKAVAGVRVGMSADGGFIINPTVEEMETSR 256

Query: 187 VDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           +D     T    ++ ++G  +    +++     L    + IA L   Q +  + +V
Sbjct: 257 LDLMVAGTRDA-VLMIEGFCD--FLTEEQMIEALGKGSEAIASLCD-QMEAWAKKV 308



 Score = 35.8 bits (82), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 19/99 (19%)

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML-- 169
           + ++  + +++G +  A++ G  +A+ D                 +   VA I+ G++  
Sbjct: 370 VRVESTITESNGSSSMASVCGGCLAMMDAGV-------------PIARPVAGIAMGLILE 416

Query: 170 ---CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
                  + D+   ED+  D+D      D   I   Q  
Sbjct: 417 SNGRNAVLSDILGSEDALGDMDFKVA-GDHDAITAFQMD 454


>gi|77407303|ref|ZP_00784238.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           H36B]
 gi|77174088|gb|EAO77022.1| polyribonucleotide nucleotidyltransferase [Streptococcus agalactiae
           H36B]
          Length = 223

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 32/99 (32%), Gaps = 10/99 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLT----TATLEEKVPMWIRNTKH 56
           +R  GR+ +++R +           GS L   G T  L+        E ++   +     
Sbjct: 119 IRPDGRRVDEIRPLDAEIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEAQIIDGLTPEYK 178

Query: 57  GWITAEYGMLPRSTGNR------VKREAVSGRQGGRSQE 89
                 Y     S G         +RE   G  G R+ E
Sbjct: 179 KRFMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALE 217


>gi|194694796|gb|ACF81482.1| unknown [Zea mays]
          Length = 218

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 68/207 (32%), Gaps = 42/207 (20%)

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVV------DLSALGSRQ- 111
           +  E+ M P  +   + R        GR  ++  +I +AL  V+      +L  L     
Sbjct: 8   VAVEFHMPPICSP--LVRP-------GRPTDVAPVISKALEDVLTSSGMLNLKDLCLITG 58

Query: 112 -----IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS------------------ 148
                  +D   + ADG    AA+  A  A       +                      
Sbjct: 59  KASWLAYLDIYCLNADGSLFDAALISAVAAFTHLEIPLVSVGDDGRLFTVGGNDGKNKFE 118

Query: 149 --NKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
             N+ +    L     +++C +     + D    E+S I+     V+  S  +V +Q   
Sbjct: 119 LVNREKRKLTLGAIPLSLTCALHKDEILADPTSEEESIIETYVTVVVDSSDRLVSLQKLG 178

Query: 207 ERATFSQDHFFAMLNLAKDRIADLIKL 233
             A          ++LAK+R   L ++
Sbjct: 179 -GAVTCMATIKECISLAKERRRSLREI 204


>gi|118371223|ref|XP_001018811.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
           thermophila]
 gi|89300578|gb|EAR98566.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
           thermophila SB210]
          Length = 776

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 81/261 (31%), Gaps = 30/261 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +RL GR+    R I +    +   E   L+  GDTH++T  T E   P   +    G + 
Sbjct: 465 IRLDGRKLMDSRNIKVIFG-NNVGEIEVLI--GDTHIITKTTAEIIQPKQEK-PNEGSLK 520

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ------I 112
               +       +        +      EIQ+++ + ++    +D+ +L          I
Sbjct: 521 FNVDLSSMQ-DEQQPNNVNIKKYSN---EIQKLLEKIIKGSKAIDMESLCIVTNKRVWSI 576

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN-------KFQLSQVLKGHVAAI- 164
            +D  V+   G    A      ++L    +                +  Q L  H   I 
Sbjct: 577 NVDSSVVSNGGNLIDAIYLSVIISLLHFRKPYVSVEQQSNIKIHTEKNPQPLSIHHIPIP 636

Query: 165 ---SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA--M 219
              +        + D    E+  ++      +     +  +      A    +      +
Sbjct: 637 FTFAFFKKSTLLVSDPLVLEEQIMEGRLTISVNIYNDVCNIHKPG-GAPIKLELINKQML 695

Query: 220 LNLAKDRIADLIKLQKDVISN 240
           + +  ++I  +    + ++  
Sbjct: 696 VEVCLNKIKQMTDFVRQILKE 716


>gi|302509154|ref|XP_003016537.1| hypothetical protein ARB_04826 [Arthroderma benhamiae CBS 112371]
 gi|291180107|gb|EFE35892.1| hypothetical protein ARB_04826 [Arthroderma benhamiae CBS 112371]
          Length = 379

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
          +R  GR   Q R ++    +   A GS  + F D T  +     E +
Sbjct: 34 IRPDGRSATQFRPLTAETNIVPNANGSARIGFADGTQAIVGVKAEVE 80


>gi|302918312|ref|XP_003052633.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256733573|gb|EEU46920.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 336

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 71/257 (27%), Gaps = 70/257 (27%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWI------ 51
           R + R    +R  S+      +A GS LV+ GDT ++     E      +P +       
Sbjct: 35  RSNRRAPTDVRIPSVNASSLSHAHGSSLVRMGDTTVICGVRGETILTSNIPSYRASNTET 94

Query: 52  RNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI----------QRMIG-RALR- 99
              ++  +     +               G     +Q +           ++I    LR 
Sbjct: 95  ELKEYDLLVPNIELATGCAPQF----LPGGPPSTLAQTLSTRVYSLLHSSKVIKPEDLRI 150

Query: 100 ----SVVDL--------------SALGSRQII------IDCDVIQADGGTRTAAITGAWV 135
                  +L              +  G + ++      +D   I  DG    AA  G   
Sbjct: 151 WHTLPAENLEADDEDRMEEDETETKDGEKAVVAYWVLYVDIFFISFDGNPFDAAWAGTLA 210

Query: 136 ALHDCLQHMED---------CSNKFQLSQVLKGHVAAISCGMLCGY-----------PIV 175
           AL D                C+ K  +   +     A +  +  G             + 
Sbjct: 211 ALRDTKLPRARYDADRETIVCTRKDPIPLTITSIPVACTAAVFTGKETDRPTDGKFWMLA 270

Query: 176 DLDYGEDSTIDVDANFV 192
           D D  E+S  D     V
Sbjct: 271 DPDRLEESLCDESVTIV 287


>gi|46128401|ref|XP_388754.1| hypothetical protein FG08578.1 [Gibberella zeae PH-1]
          Length = 336

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 2  RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
          R +GR  +++R  ++      +A GS +V+ GDT ++   
Sbjct: 36 RSNGRASDEVRTPTVNASSLSHANGSAVVRVGDTTVICGV 75


>gi|255713226|ref|XP_002552895.1| KLTH0D03960p [Lachancea thermotolerans]
 gi|238934275|emb|CAR22457.1| KLTH0D03960p [Lachancea thermotolerans]
          Length = 243

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 65/196 (33%), Gaps = 38/196 (19%)

Query: 7   QENQMREISLTRRVSKYAEGSCLVKF--GD-----THLLTTATLEEKVPMWIRNTKHGWI 59
           + N+   + +   +   A GS  ++   G+     T LL++       P     +    +
Sbjct: 36  KNNENESMYIKNGLVSNANGSSYLELKRGESSEQCTILLSSVYGPR--PSRGAFSSKASL 93

Query: 60  TAEYGMLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
           + ++            +E    +   G  +EI   +     +V++L       I I   +
Sbjct: 94  SVQF------------KEVTIEKIPSGELKEICNFLSNIFSAVINLERYPKSGIDIFLSL 141

Query: 119 IQA-----DGGTR---TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLC 170
           I+      +        A + G  +AL D    + D  +        K +V A S     
Sbjct: 142 IKNPITSDEANLEPIIAACVNGITLALADAGIEIFDTVSAGTY----KRNVVAFS---KN 194

Query: 171 GYPIVDLDYG-EDSTI 185
           G  +V L    ED T 
Sbjct: 195 GTEVVGLWKDKEDDTA 210


>gi|1628372|emb|CAA67158.1| polynucleotide phosphorylase [Dichelobacter nodosus]
          Length = 251

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 46/118 (38%), Gaps = 18/118 (15%)

Query: 127 TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG----YPIVDLDYGED 182
            A++ G+ +AL D                 ++  VA I+ G++        + D+   ED
Sbjct: 3   MASVCGSSLALMDAGV-------------PVQTPVAGIAMGLIKEGDEFAILTDILGDED 49

Query: 183 STIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
              D+D     + +G +  +Q   +    +++     L+ A +    ++++    I+ 
Sbjct: 50  HLGDMDFKVAGSATG-VTALQMDIKINGITEEIMRQALSQAHEGRLHILEVMNQAIAG 106


>gi|83317461|ref|XP_731170.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23491125|gb|EAA22735.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 137

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%)

Query: 96  RALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDC 147
             + +++ L       I I C +IQ DGG  +AA+T   +AL      M D 
Sbjct: 2   ECISNIIILEKYPQCSITIKCLIIQNDGGCLSAALTCISLALVKAQIQMRDM 53


>gi|124513540|ref|XP_001350126.1| exoribonuclease PH, putative [Plasmodium falciparum 3D7]
 gi|23615543|emb|CAD52535.1| exoribonuclease PH, putative [Plasmodium falciparum 3D7]
          Length = 278

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 68/224 (30%), Gaps = 28/224 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R+ GR     R I + + +    +GS  V   + +++    L    P  +     G + 
Sbjct: 15  IRIDGRTLLTYRSIEINKNILVSGDGSSSVINEENNVICGIKLSLITPD-VDTYDEGNVN 73

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGS--RQIIIDCDV 118
            +         NR+K++ +   Q   +      I   +   +     G     + I+  V
Sbjct: 74  LQIDCPASVAANRIKKDHL---QTMTTIIYNLCIKNNINKKILCILPGKFAWSVDINVMV 130

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ----------------------V 156
           + A GG         +VAL D    +     + +                          
Sbjct: 131 LNAGGGLLDIISIAIYVALKDTFFPIVKPKKEIEEENTFHEISNKDYQLEIVENEHVNFP 190

Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIV 200
            +     IS G +    I D+   E+  +       +T  G  V
Sbjct: 191 YENIPICISIGEINNKYIYDMSKVEEELVQNIFVVAITSKGKCV 234


>gi|300702359|ref|XP_002995181.1| hypothetical protein NCER_102034 [Nosema ceranae BRL01]
 gi|239604062|gb|EEQ81510.1| hypothetical protein NCER_102034 [Nosema ceranae BRL01]
          Length = 202

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 77/240 (32%), Gaps = 61/240 (25%)

Query: 1   MRLSGRQENQMRE--ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGW 58
            R  GR +N++R   I      +        ++ G++H+           + I   K G 
Sbjct: 20  FREDGRFKNEIRRFIIKSEFPYTS-------LRQGNSHV----------QVKIDGPKEGS 62

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
               Y  +  +T +             R  E        L S+ D   L   Q+ I  ++
Sbjct: 63  KL--YFYITGTTND-----------TKRYYE--------LFSIFDNILLLDSQLDIYVNI 101

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           ++ DG   +  +    +++                +  LK    +I+         VDL 
Sbjct: 102 LEEDGSLLSTIVNCIVLSICH-------------SNIPLKDFPCSITYSEKG----VDLS 144

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238
             E+ +  V   ++M        V   AE    + +    +  + +  I ++    K+ +
Sbjct: 145 ASEEGSGRVTVVYLMNSKK---LVYYKAEGK-ITLEKLQNIDEMGRIAIEEIFIKMKEFL 200


>gi|134080652|emb|CAK41317.1| unnamed protein product [Aspergillus niger]
          Length = 285

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 79/245 (32%), Gaps = 24/245 (9%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT--ATLEEKVPM-WIRNTKHG 57
           +R +GR  +Q R  S       +  GS +V+ G T  +    A +E+      I+     
Sbjct: 43  IRANGRAPSQFRVTSANTGSLTHTNGSAVVRVGGTTAVCGDDAEVEDPEDETHIQQLNLL 102

Query: 58  WITAEYGMLPRSTGNRVKREAVSG-RQGGRSQEIQRMIGRALRSVVDLSALGS-RQIIID 115
                   L  STG       V G      +Q +   I   L S      + +   + ID
Sbjct: 103 VPN-----LSLSTG--CAPGFVPGAPPSALAQSLSHKILNLLHSTKLEKEIKAFWVLYID 155

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYP-- 173
             +I   G    AA      AL D         +      V    V+      L G P  
Sbjct: 156 IMIISLAGNPFDAAWASVLAALRDTKLP-RAWWDVDNEMVVCSDAVSESQKLSLRGLPRR 214

Query: 174 --IVDLDYGEDSTIDVDANFVM----TDSGHIVEVQGSAERATFSQD--HFFAMLNLAKD 225
             + D D  E+         V+       G  V +Q   +   ++ D     A+++++  
Sbjct: 215 WILADPDGYEEGLSQERVCIVVDKEQGGKGKTV-IQNMEKNGGWAVDGKELKALVDISAQ 273

Query: 226 RIADL 230
           R   L
Sbjct: 274 RWEQL 278


>gi|47208254|emb|CAF93061.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 75

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
          +R+ GR     R + +   V    +GS  V  G T +L     E
Sbjct: 22 LRVDGRGCEDYRHMEIETDVVSNTDGSAKVTLGHTVVLVGIKTE 65


>gi|256070060|ref|XP_002571367.1| ribonuclease pH related [Schistosoma mansoni]
 gi|238652587|emb|CAZ39052.1| ribonuclease pH related [Schistosoma mansoni]
          Length = 239

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 45/148 (30%), Gaps = 26/148 (17%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
            SL        +GS  ++ G+  +  +       P  +R         ++          
Sbjct: 36  FSLETNPIT--DGSAYIEVGEIKVSCSVNG----PTEMRQDSQLVAVLKFASF------- 82

Query: 74  VKREAVSGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--------G 123
               +   +    S E  + R++  A+   V L      +  I  +++           G
Sbjct: 83  ---LSWLPKDVQASIEKKLSRLLLSAIEPSVMLHQFPRGKYEIVTNILDIPSYNSSGLIG 139

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKF 151
               AAIT A +AL +    M D     
Sbjct: 140 NCLAAAITCAGLALLNSGVQMYDLLVGL 167


>gi|256070058|ref|XP_002571366.1| ribonuclease pH related [Schistosoma mansoni]
 gi|238652586|emb|CAZ39051.1| ribonuclease pH related [Schistosoma mansoni]
          Length = 238

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 45/148 (30%), Gaps = 26/148 (17%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
            SL        +GS  ++ G+  +  +       P  +R         ++          
Sbjct: 35  FSLETNPIT--DGSAYIEVGEIKVSCSVNG----PTEMRQDSQLVAVLKFASF------- 81

Query: 74  VKREAVSGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--------G 123
               +   +    S E  + R++  A+   V L      +  I  +++           G
Sbjct: 82  ---LSWLPKDVQASIEKKLSRLLLSAIEPSVMLHQFPRGKYEIVTNILDIPSYNSSGLIG 138

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKF 151
               AAIT A +AL +    M D     
Sbjct: 139 NCLAAAITCAGLALLNSGVQMYDLLVGL 166


>gi|322696851|gb|EFY88637.1| hypothetical protein MAC_05255 [Metarhizium acridum CQMa 102]
          Length = 271

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 58/224 (25%), Gaps = 29/224 (12%)

Query: 21  SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80
              A+GS    +    +        + P    N     I       P +      R    
Sbjct: 14  LPNADGSATFSYCGYVVTAAVNGPIEAPRRDENPFEALIDVVVR--PAAGVGGKDRPFHL 71

Query: 81  GRQG--------GRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR------ 126
             Q          R  E   ++  ALR ++ +       I +   +++A           
Sbjct: 72  NLQSLIIWPGTAERQLES--ILQAALRQLIPIRNFPRCMIQVTLQIMEAPENAYQNTKLL 129

Query: 127 -TAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM--LCGYPIVDLDYGEDS 183
              +      AL                +  LK    A +  +    G  I+D    E +
Sbjct: 130 QAQSNLAIIPALFHAAI-----LGLLTAAVPLKTIATATTLAIPAGSGALIIDPSPEESA 184

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                     T    ++  + S    +FS + +  +L   +   
Sbjct: 185 QARSLHALAFTSHDELLLAESSG---SFSIEDWDRVLETGQRVC 225


>gi|148703330|gb|EDL35277.1| exosome component 8, isoform CRA_e [Mus musculus]
          Length = 146

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 47/140 (33%), Gaps = 13/140 (9%)

Query: 113 IIDCDV--IQADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHV 161
           ++ CD+  +  DG    A       AL +             + + + K +    ++ + 
Sbjct: 4   VLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRTNP 63

Query: 162 AAISCGMLCGYP-IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220
            A S  +      IVD    E+         V  + G +  +      +  +       +
Sbjct: 64  VATSFAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPG-GSGLTGAKLQDCM 122

Query: 221 NLAKDRIADLIKLQKDVISN 240
           + A  R  ++ KL  +VI +
Sbjct: 123 SRAVTRHKEVSKLLDEVIQS 142


>gi|225678125|gb|EEH16409.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 352

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
           +R++GR   Q R +S+      +   S +V+ GDT ++     E
Sbjct: 58  LRVNGRSTCQFRPVSVNTGSLTHTNASAVVRTGDTVVVCGVRGE 101


>gi|71413321|ref|XP_808804.1| exosome-associated protein 2 [Trypanosoma cruzi strain CL Brener]
 gi|70873085|gb|EAN86953.1| exosome-associated protein 2, putative [Trypanosoma cruzi]
          Length = 278

 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 83/224 (37%), Gaps = 39/224 (17%)

Query: 2   RLSGRQENQMR----------EISLTRRVSKYAEGSCLVK--FGDTHLLTTATLEEKVPM 49
           RL GR  + +R          +  + R V      S L     G T +    T     P 
Sbjct: 28  RLDGRPFDSIRVPHILYENRQDTKINR-VLA----STLYTDDTG-TCVNCIVTGVFGPPP 81

Query: 50  WIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL-- 107
             ++ + G +T E    P   G    +        G   E+ R +   + S +DL+ L  
Sbjct: 82  -PQHPEEGRLTVEVT-APFFPGYSAFQ------IEGTLHELARFVRSTIISCLDLTELCV 133

Query: 108 --GSRQIIIDCD--VIQADGGTRTAAITGAWVALHD-CLQHMEDCSNKFQLSQVLKGH-- 160
             G    ++  +  V+ ADGG R A +  A  ALH+  L      S     S+ L  H  
Sbjct: 134 ISGEACWVLRVELIVMNADGGLRAATLHAAVAALHNLTLPKARLPSGDVVESRCLCFHRI 193

Query: 161 VAAISCGMLCG----YPIVDLDYGEDSTIDVDANFVMTDSGHIV 200
             A + G+         ++D +  E+S  DV    V+ ++  IV
Sbjct: 194 PVAATIGLCGTAGSMQFLLDTNAAEESVADVLLTVVIDETDGIV 237


>gi|71033573|ref|XP_766428.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68353385|gb|EAN34145.1| hypothetical protein TP01_0907 [Theileria parva]
          Length = 256

 Score = 48.5 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 59/223 (26%), Gaps = 44/223 (19%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+  R    +R  S      K    SC +  G+                +          
Sbjct: 18  RIDERSNYSLRPFSFKLNPLKSGP-SCKISVGNVR---------DEKGNLTGIGGRTSVI 67

Query: 62  EYGMLPRSTGNRV--------------KREAVSGRQGGRSQE------IQRMIGRALRSV 101
              M    T ++               +  + + +   RS E      +QR++       
Sbjct: 68  SILMFSSETKSKNAPGNFHKPHMEVFVRPSSGTIKSSIRSMECTLLKIMQRLVK------ 121

Query: 102 VDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV 161
             +  LG   + +   +++  GG  +  I    + L+     M        +  V     
Sbjct: 122 --VDKLGKVTLSLRVQIMEDSGGLLSVCINTLILCLYLSGIEMISVPYSVSVGIVRPSS- 178

Query: 162 AAISCGMLCGYPIVDL-DYGEDSTIDVDANFVM-TDSGHIVEV 202
                       I+D  DY   +        +   ++G I  +
Sbjct: 179 ---DSLTAEDLVILDPTDYEIVTYCSTALTILCDPETGEISLI 218


>gi|302925936|ref|XP_003054194.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256735135|gb|EEU48481.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 250

 Score = 48.5 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 70/224 (31%), Gaps = 29/224 (12%)

Query: 15  SLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74
           +        A+GS    +G   ++       +      N     +              +
Sbjct: 8   TAELSHLPKADGSATFSYGGYTIVAAVNGPVEAQRRDENAFEALVDV------------I 55

Query: 75  KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAW 134
            R A  G  G R ++++ ++  ALR ++ +       I I   V +       A +    
Sbjct: 56  VRPAA-GVGGTRERQLESILQAALRQLIPVRDYPRCVIQITLQVAET---PENAYVNTKL 111

Query: 135 VALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT 194
                 L  +    +    S +L    AAIS   +    ++ +   E   I VD   V  
Sbjct: 112 SQSQLNLPIIPALLH----SAILSLLSAAISLKAIGAATVLAIPEEEGKDIIVDPTAVEV 167

Query: 195 DSGHIV---------EVQGSAERATFSQDHFFAMLNLAKDRIAD 229
           D    V         E+  +    +FS D +  +L L +    +
Sbjct: 168 DHAKSVHALGFTSHDELLLAESEGSFSPDEWAKVLQLGQRICCE 211


>gi|154343557|ref|XP_001567724.1| exosome-associated protein 2 [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134065056|emb|CAM43169.1| putative exosome-associated protein 2 [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 312

 Score = 48.5 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 75/265 (28%), Gaps = 53/265 (20%)

Query: 2   RLSGRQENQMREISLTR-------RVSKYAEGS---------CLVKFG-DTHLLTTATLE 44
           R+  R  +  R  ++ R        V+  A+G               G D+  L      
Sbjct: 28  RIDKRAFDACRLPTIVREERFGSASVAGAADGCPQNLEKGIMAGASTGPDSKSLAAVMYT 87

Query: 45  EKV-------------PMWIRNTKHGWITAEYGMLPRSTG------NRVKREAVSGRQGG 85
           +               P +      G +       P +        +   R        G
Sbjct: 88  DAYGTCIQCTVQGLLGPPFPDQPAAGRLNVRVE-APFAEHLSGGAASSNYRSFQYMVTSG 146

Query: 86  RSQEIQRM----IGRALRSVVDLSAL----GSR--QIIIDCDVIQADGGTRTAAITGAWV 135
            +   QR     I   L    DLS L    G     + ++  ++  DGG R  ++  A  
Sbjct: 147 STDLPQRQLEGYISTVLDGCFDLSQLSIYEGEACWVLNVNVLLLSFDGGLRAGSLHAALA 206

Query: 136 ALHDCLQHMEDCSNKFQLS---QVLKGHVAAISCGMLCG---YPIVDLDYGEDSTIDVDA 189
           ALH          N   +      L     A + G L G     + D    E+   D   
Sbjct: 207 ALHKLHLPRTRLPNGDVIEGRQVQLSCMPVACTFGFLAGAQVRLVTDTTAIEERVADGLI 266

Query: 190 NFVMTDSGHIVEVQGSAERATFSQD 214
             V+++   +V V  +      +Q 
Sbjct: 267 TVVVSEMEALVSVHHTGRCPLLTQA 291


>gi|146185829|ref|XP_001032580.2| hypothetical protein TTHERM_00584730 [Tetrahymena thermophila]
 gi|146142879|gb|EAR84917.2| hypothetical protein TTHERM_00584730 [Tetrahymena thermophila
           SB210]
          Length = 136

 Score = 48.5 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 51/151 (33%), Gaps = 24/151 (15%)

Query: 98  LRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL 157
           L  +V++       + +  D+IQ +G      +  A  AL      + D           
Sbjct: 2   LSEIVNIKQYPKSILQLTFDIIQVNGPVFPYLVNVACFALSLAGIQILDI---------- 51

Query: 158 KGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHF 216
               ++   G +    I+D    E + ++     V M +S  I+ +  +    +   +  
Sbjct: 52  ---FSSAYMGFIGNNLIIDPSDKEFALMNKKLCIVQMKNSQKIIYLDMNG---SLDFEEI 105

Query: 217 FAMLNLAKDRIADLIKL-------QKDVISN 240
             +L+L       +  L       Q  V+SN
Sbjct: 106 QKLLSLGISGCNKISTLMSTLLIEQNAVLSN 136


>gi|261192783|ref|XP_002622798.1| 3' exoribonuclease [Ajellomyces dermatitidis SLH14081]
 gi|239589280|gb|EEQ71923.1| 3' exoribonuclease [Ajellomyces dermatitidis SLH14081]
          Length = 436

 Score = 48.2 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
           +R++GR  +Q R  S+      +   S +V+ GDT  +     E
Sbjct: 66  LRVNGRTPSQFRPASINIGSLTHTNASAVVRMGDTVAVCGVRGE 109


>gi|50311745|ref|XP_455901.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49645037|emb|CAG98609.1| KLLA0F18304p [Kluyveromyces lactis]
          Length = 236

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 63/186 (33%), Gaps = 31/186 (16%)

Query: 14  ISLTRRVSKYAEGSCLVKFGD-T--HLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           + ++  +   A GS  +++ D T   +L  +++    P+         ++ ++  +   T
Sbjct: 45  VFISTDLVTNANGSSYLEYMDGTSDQVLVMSSVFGPRPLRGSFQSKASVSIQFKEV---T 101

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT--- 127
              +          G  +EI   +     +V+++       I I  D+IQ      T   
Sbjct: 102 LEHLN--------TGEIKEICTFLTNVFNAVINVEKYPKSGIDIFIDLIQHSNSNPTEEA 153

Query: 128 -------AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
                    I    +AL D    + D  +             ++   +  G+ IV +   
Sbjct: 154 NIVNILPTCINSITMALVDAGIEIIDLVSAGSKDN-------SVVAFIRNGHEIVGIWSD 206

Query: 181 EDSTID 186
           +D+  D
Sbjct: 207 DDNVTD 212


>gi|327355316|gb|EGE84173.1| 3' exoribonuclease [Ajellomyces dermatitidis ATCC 18188]
          Length = 436

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
           +R++GR  +Q R  S+      +   S +V+ GDT  +     E
Sbjct: 66  LRVNGRTPSQFRPASINIGSLTHTNASAVVRMGDTVAVCGVRGE 109


>gi|71663570|ref|XP_818776.1| exosome-associated protein 2 [Trypanosoma cruzi strain CL Brener]
 gi|70884046|gb|EAN96925.1| exosome-associated protein 2, putative [Trypanosoma cruzi]
          Length = 278

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 83/224 (37%), Gaps = 39/224 (17%)

Query: 2   RLSGRQENQMR----------EISLTRRVSKYAEGSCLVK--FGDTHLLTTATLEEKVPM 49
           RL GR  + +R          +  + R V      S L     G T +    T     P 
Sbjct: 28  RLDGRPFDSIRVPHILHENRQDTKINR-VLA----STLYTDDTG-TCVNCIVTGVFGPPP 81

Query: 50  WIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL-- 107
             ++ + G +T E    P   G    +        G   E+ R +   + S +DL+ L  
Sbjct: 82  -PQHPEEGRLTVEVT-APFFPGYSAFQ------IEGTLHELARFVRSTIISCLDLTELCV 133

Query: 108 --GSRQIIIDCDVI--QADGGTRTAAITGAWVALHD-CLQHMEDCSNKFQLSQVLKGH-- 160
             G    ++  ++I   ADGG R A +  A  ALH+  L      S     S+ L  H  
Sbjct: 134 ISGEACWVLRVELILMNADGGLRAATLHAAVAALHNLTLPKARLPSGDVVESRCLCFHRI 193

Query: 161 VAAISCGMLCG----YPIVDLDYGEDSTIDVDANFVMTDSGHIV 200
             A + G+         ++D +  E+S  DV    V+ ++  IV
Sbjct: 194 PVAATIGLCGTAGSMQFLLDTNAAEESVADVLLTVVIDETDGIV 237


>gi|76157078|gb|AAX28121.2| SJCHGC04363 protein [Schistosoma japonicum]
          Length = 103

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 2   RLSGRQENQMREISLTR--RVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGW 58
           RL GR  N+ REIS            G C+VK G T ++   ++E   P   R +    +
Sbjct: 19  RLDGRSINEYREISFRFPQGKDPNISGCCVVKIGATTVMAQVSVEVIEPKHFRPSQGMLF 78

Query: 59  ITAEYGMLPRS-TGNRVKREAVSGR 82
           +  +  +L  S T  R ++    GR
Sbjct: 79  VHFDASILKLSKTVFRKQKRDDEGR 103


>gi|226287622|gb|EEH43135.1| 3' exoribonuclease family protein [Paracoccidioides brasiliensis
           Pb18]
          Length = 439

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
           +R++GR   Q R +S+      +   S +V+ GDT ++     E
Sbjct: 58  LRVNGRSTCQFRPVSVNTGSLTHTNASAVVRTGDTVVVCGVRGE 101


>gi|239610182|gb|EEQ87169.1| 3' exoribonuclease [Ajellomyces dermatitidis ER-3]
          Length = 435

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
           +R++GR  +Q R  S+      +   S +V+ GDT  +     E
Sbjct: 66  LRVNGRTPSQFRPASINIGSLTHTNASAVVRMGDTVAVCGVRGE 109


>gi|242776727|ref|XP_002478890.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
           putative [Talaromyces stipitatus ATCC 10500]
 gi|218722509|gb|EED21927.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
           putative [Talaromyces stipitatus ATCC 10500]
          Length = 252

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 21/181 (11%)

Query: 82  RQGGRSQEIQRMIGRALR--SVVDLSALGS------RQIIIDCDVIQADGGTRTAAITGA 133
           RQ      + R++ R +R  + +D  +L          I  D  V   DG    +A  G 
Sbjct: 53  RQNELETYVSRVLDRVIRHSNALDTESLCILKGKSCWNIRADVHVTDYDGNLIDSACIGI 112

Query: 134 WVAL----------HDCLQHMEDCSNKFQLSQVLKGHVAAIS--CGMLCGYPIVDLDYGE 181
              L           D    +   + +  +   +     +I+          I+D    E
Sbjct: 113 MAGLQHFRRPDIEVKDGQVRVFGINERVPVPLNITHKPLSITFQSFHEGKVLILDATRKE 172

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
           +   + D    +  +G    V  +A  +  S        NLA+ ++ ++  +    +  +
Sbjct: 173 EQASEGDLIIALNSTGETCAVYKAA-GSPVSALEVINKTNLAQQKVLEINGIISKALEAD 231

Query: 242 V 242
           +
Sbjct: 232 L 232


>gi|156032965|ref|XP_001585319.1| hypothetical protein SS1G_13558 [Sclerotinia sclerotiorum 1980]
 gi|154698961|gb|EDN98699.1| hypothetical protein SS1G_13558 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 209

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/177 (11%), Positives = 52/177 (29%), Gaps = 23/177 (12%)

Query: 78  AVSGRQGGRSQEIQRMIGRALR--SVVDLSALGS------RQIIIDCDVIQADGGTRTAA 129
             + R   +   + R++ + LR  + +D  +L          +  D  ++  DG    A+
Sbjct: 6   FETNRPTEQEVLLSRLLEKTLRRSAALDTESLCLIAGQKCWSVRADVHILSHDGNLIDAS 65

Query: 130 ITGAWVALHDCLQH----------MEDCSNKFQLSQVLKGHVAAISCGMLCG----YPIV 175
                 AL    +           +   + +  +   L      ++            ++
Sbjct: 66  CIAIIAALQHFKKPDTSTEGETVTVYTLAEREPVPLSLLHFPLCVTFSFYGKGEEQVRLL 125

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
           D    E+   +      M   G + ++                  N+A +++ D+  
Sbjct: 126 DTTLLEEQLREGSCTISMNRHGEVCQIAKLG-GIAVDALELLQCTNMALEKVKDISA 181


>gi|242781432|ref|XP_002479799.1| 3' exoribonuclease family protein [Talaromyces stipitatus ATCC
          10500]
 gi|218719946|gb|EED19365.1| 3' exoribonuclease family protein [Talaromyces stipitatus ATCC
          10500]
          Length = 407

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
          +R +GR   + R  S       +  GS +V+ GDT  +   
Sbjct: 44 IRPNGRAPLEFRATSANLGSLSHTNGSAVVRIGDTAAVCGV 84


>gi|66814304|ref|XP_641331.1| hypothetical protein DDB_G0280251 [Dictyostelium discoideum AX4]
 gi|74855928|sp|Q54VM4|EXOS7_DICDI RecName: Full=Putative exosome complex exonuclease RRP42; AltName:
           Full=Exosome component 7; AltName: Full=Ribosomal
           RNA-processing protein 42
 gi|60469358|gb|EAL67352.1| hypothetical protein DDB_G0280251 [Dictyostelium discoideum AX4]
          Length = 324

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 39/144 (27%), Gaps = 15/144 (10%)

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF--------------QLSQV 156
            + +D  V+ +DG    A       AL +                           LS  
Sbjct: 179 TLYVDAIVLDSDGNLFDALSIACRSALQNTRIPRVKAIQGEYEEITFEVSDDPEDTLSLS 238

Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
           +      ++   +    ++D    E+  ++      +    +I  +Q             
Sbjct: 239 IDNVPICVTLTKIGNQFVIDTTLQEELCMNARLTVGVNSLANICSIQKGGIDG-LDPTTI 297

Query: 217 FAMLNLAKDRIADLIKLQKDVISN 240
             M+N AK     ++ +    +  
Sbjct: 298 NQMINTAKVVGVKILNIMDKTLKE 321



 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 35/103 (33%), Gaps = 13/103 (12%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT-----LEEKVPMWIRNTK 55
           +R  GR     R  ++      +A GS  VK   T +L         ++ ++   ++ + 
Sbjct: 20  IRSDGRNRVDYRNFAIETGEIIHANGSARVKLSQTEVLVGVKAEITHIQSEITSNLQQSD 79

Query: 56  -HGWITAEYGMLPRSTGNRVKREAVSGRQGG-RSQEIQRMIGR 96
               +       P ++          G+     + E+ + + R
Sbjct: 80  TSKRLVFSVNCCPSASPEF------EGKGSEFLNIELSKQLER 116


>gi|270010733|gb|EFA07181.1| hypothetical protein TcasGA2_TC010182 [Tribolium castaneum]
          Length = 175

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 32/109 (29%), Gaps = 13/109 (11%)

Query: 15  SLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV 74
           S    +    +GS L    +T ++       +        +   + A +   P+S     
Sbjct: 7   SCKLGILSRPDGSVLFSQDETTVVAGVYGPVESKANKALVEKACVEAHFR--PKSGL--- 61

Query: 75  KREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADG 123
               V  R          +I     + +  +      +++    +Q +G
Sbjct: 62  --PGVKDRLNE------SIIRNVCEAAIATAMYPRTSVVVVIQEMQNNG 102


>gi|123508639|ref|XP_001329682.1| nucleolar autoantigen-like protein [Trichomonas vaginalis G3]
 gi|121912729|gb|EAY17547.1| nucleolar autoantigen-like protein, putative [Trichomonas vaginalis
           G3]
          Length = 315

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 74/246 (30%), Gaps = 57/246 (23%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR  N+ R +++      +++G+ +VK G T +     ++ +V     +   G+ +
Sbjct: 25  LRPDGRDPNEPRRLTVD-----FSDGAAIVKLGSTIVSCRV-IKNQVLADENHPNQGFFS 78

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--------------VVDLSA 106
                   ST                       I    R+               +DL +
Sbjct: 79  IGLS----STHK---------------------IDSYFRAETLNAVRDMFKMNNALDLES 113

Query: 107 L----GSRQIIIDCD--VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160
           L    G     + C+  +++ DGG   A        L          S +   S  L   
Sbjct: 114 LVIQIGKLVWELKCEIVILENDGGLFEAMTLAVGCGLLATKLP----STRGDRSLTLHHL 169

Query: 161 VAAISCGMLCGYP-IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAM 219
              I+  ++      VD    E    D          G I  ++ +    T         
Sbjct: 170 PIPITFALIDQRTRFVDPTVLEALACDGFLTICANAQGEICSIRKNG-GVTLPSTVMDNC 228

Query: 220 LNLAKD 225
           +++A D
Sbjct: 229 IDIAVD 234


>gi|240964212|ref|XP_002400824.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
           [Ixodes scapularis]
 gi|215490745|gb|EEC00386.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
           [Ixodes scapularis]
          Length = 157

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 49/147 (33%), Gaps = 16/147 (10%)

Query: 92  RMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF 151
           +++   L +V+ ++      I I    +  DG      I  A +A  D    M       
Sbjct: 11  KVVRSTLETVMLVALHPRTCISISLQELHNDGSLLACCINAACLAAIDAAIAM------- 63

Query: 152 QLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERAT 210
                 K  VAA+S  +   G  ++D +  ++        F         +V  +     
Sbjct: 64  ------KCQVAAVSAAITHTGIVVLDPNKKQEEEARATCTFSFESRDS--KVVSTRTTGR 115

Query: 211 FSQDHFFAMLNLAKDRIADLIKLQKDV 237
           FS   F   L+  +   AD+    +D 
Sbjct: 116 FSAQEFQKCLSACRAAAADIFAFYRDA 142


>gi|295662695|ref|XP_002791901.1| 3' exoribonuclease family protein [Paracoccidioides brasiliensis
           Pb01]
 gi|226279553|gb|EEH35119.1| 3' exoribonuclease family protein [Paracoccidioides brasiliensis
           Pb01]
          Length = 436

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
           +R++GR   Q R +S+      +   S +V+ GDT ++     E
Sbjct: 58  LRVNGRSTCQFRPVSVNTGSLTHTNASAVVRTGDTVVVCGVRGE 101


>gi|310798543|gb|EFQ33436.1| 3' exoribonuclease family protein [Glomerella graminicola M1.001]
          Length = 383

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLE---EKVPMWIRNTKH 56
          +R  GR+ NQ R ++    +     GS  V F D T  +     E    +VP        
Sbjct: 27 IRPDGRKANQFRPLTAETGILPGTNGSARVCFSDGTEAIVGVKAEIEKTRVPPGAETDGE 86

Query: 57 G 57
           
Sbjct: 87 A 87


>gi|255522516|ref|ZP_05389753.1| ribonuclease PH [Listeria monocytogenes FSL J1-175]
          Length = 31

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLV 30
          MR+ GR+ N +R I +T     + EGS L+
Sbjct: 1  MRVDGRESNALRNIEVTPDYLMHPEGSVLI 30


>gi|238571033|ref|XP_002386955.1| hypothetical protein MPER_14569 [Moniliophthora perniciosa FA553]
 gi|215440457|gb|EEB87885.1| hypothetical protein MPER_14569 [Moniliophthora perniciosa FA553]
          Length = 81

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 6/83 (7%)

Query: 16 LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           T      A GS LV+ G+T ++     E   P  +     G++     +    +     
Sbjct: 3  FTIGSISTANGSALVRMGNTTVVCGVKAEIAEP-ELDKPNDGFLVPNIDLPAICSSK--- 58

Query: 76 REAVSGRQGGRSQEIQRMIGRAL 98
               G     +Q I   +  AL
Sbjct: 59 --FKPGPPSEEAQVISERLNDAL 79


>gi|312213335|emb|CBX93417.1| similar to 3' exoribonuclease family protein [Leptosphaeria
          maculans]
          Length = 371

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
          +R +GR  ++ R   L      +  GS +V+ G+T ++     E
Sbjct: 45 LRANGRTAHEFRTPGLHTGSLTHCNGSAVVRLGNTSVVCGVRGE 88


>gi|315055833|ref|XP_003177291.1| 3' exoribonuclease [Arthroderma gypseum CBS 118893]
 gi|311339137|gb|EFQ98339.1| 3' exoribonuclease [Arthroderma gypseum CBS 118893]
          Length = 415

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
          +R++GR + Q R  S++     +  GS +V+ GDT  +   
Sbjct: 52 VRINGRTDAQFRPASVSTGSLTHTNGSAVVRMGDTAAVCGV 92


>gi|313212644|emb|CBY36592.1| unnamed protein product [Oikopleura dioica]
 gi|313225048|emb|CBY20841.1| unnamed protein product [Oikopleura dioica]
          Length = 232

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 85/248 (34%), Gaps = 34/248 (13%)

Query: 5   GRQENQMRE--------ISLTRRVSKYAEGSCLV--KFGDTHLLTTATLEEKVPMWIRNT 54
           GR+E ++          + +        +GS ++  + G   ++       +     ++ 
Sbjct: 2   GRREAEIHPSQVQKQKEVQVRLGCLSRCDGSAMLVSELG--TVVCGVNGPVEAKEREQDP 59

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
               +T    + P S     ++     RQ      I+R I   L S+V   A    QI I
Sbjct: 60  TR--VTVNVILHPPS----NQQTGPIHRQ------IERTISGLLASLVQKEANPRCQIQI 107

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
               ++++    T  +  A +A+ D    M   +    ++ V           ++    +
Sbjct: 108 ILQPLESE-FCVTPLVNCAILAMLDAGIQMHHVAAGGTVALVENKIEEKQQLDLIGNPTL 166

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQ 234
            D++           + V + +G ++ VQ   +     Q H    L+ A +    +  L 
Sbjct: 167 EDIEK-----SIGSIHAVFSRTGKLLAVQSDGDF----QGHLMDALHKAANSAKPVFNLF 217

Query: 235 KDVISNEV 242
           +D +   +
Sbjct: 218 QDAVQKRL 225


>gi|46138729|ref|XP_391055.1| hypothetical protein FG10879.1 [Gibberella zeae PH-1]
          Length = 338

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLE 44
          +R  GR   Q R ++    V     GS  V F D T  +     E
Sbjct: 26 IRPDGRSPTQFRPLTAETGVLPGTNGSARVHFADGTEAIVGVKAE 70


>gi|322487849|emb|CBZ23093.1| putative ribosomal RNA processing protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 324

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 55/180 (30%), Gaps = 13/180 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   ++R   +        +GS     G T ++ +       P   +N ++     
Sbjct: 7   RRDGRTALELRGKEMRLSDMTAFDGSSWYAQGQTAVMVSIHG----PTIAKNDEYDTCIV 62

Query: 62  EYG------MLPRSTG-NRVKREAVSGRQGGRSQEIQR--MIGRALRSVVDLSALGSRQI 112
           +        + P + G  +   E        R+  +    ++   L +V          +
Sbjct: 63  QVRIQHAGVLAPAAGGAEKALYEERKLELLTRTDALALGSLLESTLNAVFVRERFPRCVL 122

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
           ++D  VI+ DG     A+     AL D             ++ V     A  + G     
Sbjct: 123 VVDVVVIRDDGSLPAVALNAVMSALLDAGLPCRTTMAAVCVAVVTHDGEADSTSGPAQDR 182


>gi|221219924|gb|ACM08623.1| Exosome complex exonuclease RRP45 [Salmo salar]
          Length = 114

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 2  RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
          RL GRQ    R I ++   + Y  G C V  G T ++   + E   P   R    G +  
Sbjct: 23 RLDGRQTYDYRSIKISFG-TDY--GCCFVDLGKTRIMAQVSCELITPKENR-PNEGIMFF 78

Query: 62 EYGMLPRSTG 71
             + P ++ 
Sbjct: 79 NIELSPMASP 88


>gi|296812517|ref|XP_002846596.1| exosome complex exonuclease RRP42 [Arthroderma otae CBS 113480]
 gi|238841852|gb|EEQ31514.1| exosome complex exonuclease RRP42 [Arthroderma otae CBS 113480]
          Length = 376

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
          +R  GR   Q R ++    +   A GS  + F D T  +     E +
Sbjct: 34 IRPDGRSATQFRPLAAETNIVPNAYGSARIGFADGTQAIVGVKAEVE 80


>gi|294655825|ref|XP_458018.2| DEHA2C07766p [Debaryomyces hansenii CBS767]
 gi|199430635|emb|CAG86078.2| DEHA2C07766p [Debaryomyces hansenii]
          Length = 235

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 83/248 (33%), Gaps = 40/248 (16%)

Query: 14  ISLTRR--VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           ++      V    +GS  +  G T ++T+ T   + P   +            +   ++ 
Sbjct: 1   MTFEVNTSVLSRVDGSAELSVGTTKVITSVTGPIE-PKIRQ-----------ELPNLASL 48

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI-----QADGGT- 125
             + R ++ G    R + ++  +   L+S++       + I I    +       D G+ 
Sbjct: 49  EIIVRPSL-GVSTTREKALEDKLRSILQSIIIRYKYPRQLIQIVVQFLITENNINDNGSN 107

Query: 126 ----------RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
                       AAI   + AL D    + +  +   +   L           +    + 
Sbjct: 108 QHNKDFTSTELNAAINCCYFALIDANIALYNSFSSTSICIPLDTKKEN----YIFNPNMN 163

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK-LQ 234
           DL   E   +    +   + + +++ ++       FS+D     +  A D    +    Q
Sbjct: 164 DLIVSESHHVIC-FSIKDSKAANLLLLE---SHGKFSEDQLLLAIRKAGDECESIHNTYQ 219

Query: 235 KDVISNEV 242
           +  I+N+V
Sbjct: 220 RKCIANKV 227


>gi|320586467|gb|EFW99137.1| 3 exoribonuclease family protein [Grosmannia clavigera kw1407]
          Length = 389

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 15/40 (37%)

Query: 2  RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
          R +GR   + R   +       A GS  V+   T ++   
Sbjct: 42 RPNGRSPEEARAFDVHTGSLSQAHGSAAVRLDRTRVICGV 81


>gi|296423938|ref|XP_002841509.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637749|emb|CAZ85700.1| unnamed protein product [Tuber melanosporum]
          Length = 204

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 72/227 (31%), Gaps = 41/227 (18%)

Query: 24  AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQ 83
           A+GS     G T LL +     +V          ++                R +  G  
Sbjct: 2   ADGSAQYTDGPTTLLASINGPIEVKPRDEIPLEAYL------------EITIRPSA-GVT 48

Query: 84  GGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT--------RTAAITGAWV 135
             R + ++ ++  A+  ++  +A     + I   VIQ +  +         T+AI    +
Sbjct: 49  SVREKHLEALLRSAISPLIIRTAYPRTLLQITLQVIQHEQASMAYALHTLLTSAIVVVML 108

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTD 195
           AL D    M        + +         S   + GY I         T        + +
Sbjct: 109 ALVDAGVPMRGMLAAAFVEE------GDGSAAHVFGYAI---------TGGGGGWGGIKE 153

Query: 196 SGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
               VE         F +  F A   + + +  ++ +L KD +  +V
Sbjct: 154 GLVFVE-----SDGVFDEKGFVAASEVGRKKCLEVGELMKDWVREKV 195


>gi|302899909|ref|XP_003048154.1| hypothetical protein NECHADRAFT_40151 [Nectria haematococca mpVI
          77-13-4]
 gi|256729086|gb|EEU42441.1| hypothetical protein NECHADRAFT_40151 [Nectria haematococca mpVI
          77-13-4]
          Length = 340

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLE 44
          +R  GR   Q R ++    V     GS  V+F D T  +     E
Sbjct: 26 IRPDGRTPTQFRPLTAETGVLPGTNGSARVQFADGTEAIVGVKAE 70


>gi|156086782|ref|XP_001610798.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154798051|gb|EDO07230.1| conserved hypothetical protein [Babesia bovis]
          Length = 267

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 86/262 (32%), Gaps = 40/262 (15%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           RL GR+ +   +I +   VS  A GS  V   DT ++TT       P    + + G +  
Sbjct: 13  RLDGRRLDDNPKILIEPNVSTGAHGSAKVILDDTVVITTIMFHVTSPN-TNSPEEGNVEI 71

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEI-------QRMIGRALRSVVDLSALGSRQIII 114
             G  P +  +      +S ++  R   I       +++  R L  +  LS      + I
Sbjct: 72  TLG-SPFTLED----SDISQKRDERMAHILEMLQFHKQLFNRKL--LCILSGQYVWTMRI 124

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMED---------------------CSNKFQL 153
              V+Q  GG   A       A+                                    +
Sbjct: 125 HTTVLQRGGGVMDAVSVAVICAMLTVSVPNIRGVIKDELESSRTATNVRLRTMEGYNTDI 184

Query: 154 SQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQ 213
            ++ +     ++   +    +  ++  E +  D      +  +G+   +   A  A+F  
Sbjct: 185 EKLAREIPVLVTVARIGESHVWSVNQEEAACADGFLTVAVFPNGNCAGI--RAVGASFPL 242

Query: 214 DHFFAMLNLAKDRIADLIKLQK 235
               +++  AK R   L + Q+
Sbjct: 243 SVMPSLI--AKARTIGLYQHQQ 262


>gi|157823529|ref|NP_001099902.1| exosome complex exonuclease RRP43 [Rattus norvegicus]
 gi|149064772|gb|EDM14923.1| exosome component 8 (predicted), isoform CRA_c [Rattus norvegicus]
          Length = 140

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 11/131 (8%)

Query: 120 QADGGTRTAAITGAWVALHDCLQH---------MEDCSNKFQLSQVLKGHVAAISCGMLC 170
             DG    A       AL +             + + + K +    ++ +  A S  +  
Sbjct: 7   DYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRANPVATSFAVFD 66

Query: 171 GYP-IVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               IVD    E+         VM + G +  +      +  +       ++ A  R  +
Sbjct: 67  DTLLIVDPTGEEEHLSTGTLTVVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSRAVTRHKE 125

Query: 230 LIKLQKDVISN 240
           + KL  +VI +
Sbjct: 126 VSKLLDEVIQS 136


>gi|162605798|ref|XP_001713414.1| hypothetical protein GTHECHR3079 [Guillardia theta]
 gi|13794346|gb|AAK39723.1|AF083031_80 hypothetical protein [Guillardia theta]
          Length = 209

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL 38
          +RL GR  N++R I +   + K    S  +  G T +L
Sbjct: 4  IRLDGRACNEIRPIKIKSNIFKNYAFSTEISIGATKIL 41


>gi|50288139|ref|XP_446498.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525806|emb|CAG59425.1| unnamed protein product [Candida glabrata]
          Length = 233

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 51/167 (30%), Gaps = 33/167 (19%)

Query: 13  EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGN 72
           +I +   +    +GS  +    T++L   T    V    R      +  E  + P     
Sbjct: 4   DIVVELGLLSEVDGSAKLLMNSTNVLCAVTGP--VEPKARQELPTEMALEVIVRP----- 56

Query: 73  RVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGG-------T 125
                   G    R + ++  I      ++       +   I C +++A           
Sbjct: 57  ------AKGVPTPREKYLEDKIRAIFTPLITRHKYPRQLCQITCQIMEAGENEQLHNQKE 110

Query: 126 RTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGY 172
            +A +  A +AL +    + D +             AA++  ++   
Sbjct: 111 LSACVNSALLALVNAGVALNDLA-------------AAVTIAVIDDQ 144


>gi|320586226|gb|EFW98905.1| 3 exoribonuclease family protein [Grosmannia clavigera kw1407]
          Length = 644

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTAT 42
           +R  GR   Q R +     +   A GS  V F D T  +    
Sbjct: 272 IRPDGRSPTQFRPLRAETGMLPGANGSARVCFSDGTEAIVGVK 314


>gi|303390675|ref|XP_003073568.1| ribonuclease [Encephalitozoon intestinalis ATCC 50506]
 gi|303302715|gb|ADM12208.1| ribonuclease [Encephalitozoon intestinalis ATCC 50506]
          Length = 209

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 22/147 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R  GR+  ++R +   RR+    EG   ++ G+T +        +V           I 
Sbjct: 8   FREDGRKPKELRRVEARRRMVGD-EGIVEIRQGNTQVSAACRGSREV-------GKISIG 59

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            E+ ++        ++E ++ R   R+ E + ++     SV     L      I   V +
Sbjct: 60  VEFYVVS-------RQEPINER---RALEYEGLLLDIFSSV----LLPEGSADIKVIVRE 105

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDC 147
             G   +A I    + L      + D 
Sbjct: 106 DGGSLLSAMINCITLCLSYFGIPLRDM 132


>gi|322698522|gb|EFY90291.1| 3' exoribonuclease family protein (Rrp42), putative [Metarhizium
           acridum CQMa 102]
          Length = 330

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTK--HG 57
           +R  GR   Q R ++    +     GS  V F D T  +     E +    +R+ +   G
Sbjct: 26  IRPDGRSSTQFRPLTAETGILPGTNGSARVCFSDGTEAIVGVKAEIEKTPGVRDAEDNDG 85

Query: 58  WITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI 90
            ++A        T +R + + +       + EI
Sbjct: 86  KLSAIANAAADDTRSRARGDWL-----EMTIEI 113


>gi|189198756|ref|XP_001935715.1| 3' exoribonuclease family protein [Pyrenophora tritici-repentis
          Pt-1C-BFP]
 gi|187982814|gb|EDU48302.1| 3' exoribonuclease family protein [Pyrenophora tritici-repentis
          Pt-1C-BFP]
          Length = 347

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 20/41 (48%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
          +R +GR  N+ R   +      +  GS +V+ G+T ++   
Sbjct: 39 VRANGRTSNEYRTPGINTGSLTHCNGSAVVRLGNTSVVCGV 79


>gi|324518003|gb|ADY46978.1| Exosome complex exonuclease RRP43 [Ascaris suum]
          Length = 277

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 51/153 (33%), Gaps = 43/153 (28%)

Query: 3   LSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAE 62
             GR     R ISL   V++ A GSC+ + G    + TA +E   P     +    I   
Sbjct: 25  PDGRSIGSFRPISLQMGVTQSAAGSCVSRQGG--AMVTARIE---PFLAVRSDDSIIVPH 79

Query: 63  YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA---LRSVVDLSALGSRQ-------- 111
               P                       QR++  A   LR +++  A   R         
Sbjct: 80  IDAAPIIP--------------------QRVVEDAEVLLRQLIEEEAFFKRDQLVTANGR 119

Query: 112 ----IIIDCDVIQADG---GTRTAAITGAWVAL 137
               + +   ++  DG    T    +TGA++ L
Sbjct: 120 LMWILHLHIAILNLDGCLLDTLVTCVTGAFLDL 152


>gi|240278204|gb|EER41711.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
          Length = 129

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
          +R  GR   Q R ++    +   A GS  + F D T  +     E +
Sbjct: 35 IRTDGRAATQFRPLTAETDILPGANGSARIGFADGTQAIVGVKAEVE 81


>gi|171689454|ref|XP_001909667.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944689|emb|CAP70800.1| unnamed protein product [Podospora anserina S mat+]
          Length = 376

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 1/52 (1%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWI 51
          +R  GR   Q R +S    +     GS  + F D T  +     E +     
Sbjct: 27 IRPDGRSPTQYRPLSAETGILPGTNGSARICFADGTEAIVGVKAEVEKTRRR 78


>gi|308497422|ref|XP_003110898.1| hypothetical protein CRE_04585 [Caenorhabditis remanei]
 gi|308242778|gb|EFO86730.1| hypothetical protein CRE_04585 [Caenorhabditis remanei]
          Length = 526

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 101 VVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160
           V+ ++    + I I+  V+  DGG  + AIT   +AL          +           H
Sbjct: 68  VIFVNKYPGKVIDIEVTVLSDDGGVLSTAITAVTLALAHSGIEHMGLTA--------SAH 119

Query: 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFV 192
           VA  S G     P       ED+   V   FV
Sbjct: 120 VALKSNGDYITDPST--SEAEDAIGGVTFAFV 149


>gi|123974907|ref|XP_001314060.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121896083|gb|EAY01245.1| hypothetical protein TVAG_027130 [Trichomonas vaginalis G3]
          Length = 263

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 34/149 (22%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-----THLLTTATLEEKVPMWIRNTK 55
           MR+ GR+  Q R   +       +  SC V  G      T ++   ++  +V       +
Sbjct: 22  MRMDGREFLQSRTHEIELNPLPLSPSSCKVIKGHGYSNTTEVI--VSINTEV----ALNE 75

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIG----------RALRS--VVD 103
           H         LP + G                 EI ++I             L     + 
Sbjct: 76  HAEFDLSVKSLPGAFG-----------PNLEDAEICQVIKTTIKHFLVNSEVLEPNQFIL 124

Query: 104 LSALGSRQIIIDCDVIQADGGTRTAAITG 132
            ++  S +I ID  +++A GG   A++ G
Sbjct: 125 FNSPYSWKIYIDVLILKAAGGVYEASMLG 153


>gi|212526640|ref|XP_002143477.1| 3' exoribonuclease family protein [Penicillium marneffei ATCC
          18224]
 gi|210072875|gb|EEA26962.1| 3' exoribonuclease family protein [Penicillium marneffei ATCC
          18224]
          Length = 408

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
          +R +GR   + R  S       +  GS +V+ GDT  +   
Sbjct: 52 LRANGRAPLEFRTTSANLGSLSHTNGSAVVRIGDTAAVCGV 92


>gi|330926139|ref|XP_003301342.1| hypothetical protein PTT_12814 [Pyrenophora teres f. teres 0-1]
 gi|311324033|gb|EFQ90557.1| hypothetical protein PTT_12814 [Pyrenophora teres f. teres 0-1]
          Length = 347

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 20/41 (48%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
          +R +GR  N+ R   +      +  GS +V+ G+T ++   
Sbjct: 39 VRANGRTSNEYRTPGINTGSLTHCNGSAVVRLGNTSVVCGV 79


>gi|155368670|emb|CAO85913.1| exosome subunit EAP2 [Leishmania tarentolae]
          Length = 312

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 59/191 (30%), Gaps = 24/191 (12%)

Query: 39  TTATLEEKVPMWIRNTKHGWITAEYGMLPR---------STGNRVKR-EAVSGRQGGRSQ 88
            T       P        G +       P          ST  R  +    SG      +
Sbjct: 96  CTVHGLLG-PPRPDQPAAGRLHVHVE-APFVEHLGGGANSTNPRSFQYMIASGNADLPLR 153

Query: 89  EIQRMIGRALRSVVDLSAL----GSR--QIIIDCDVIQADGGTRTAAITGAWVALHDCLQ 142
           +++  IG  L S  DL  L    G     + +   ++  DGG R  ++  A  ALH    
Sbjct: 154 QLEGFIGTVLDSCFDLKQLSIYEGEACWVLKVSVLLLSFDGGLRAGSLHAALAALHKLHL 213

Query: 143 HMEDCSNKFQLS---QVLKGHVAAISCGMLCG---YPIVDLDYGEDSTIDVDANFVMTDS 196
                 N   ++     L     A + G L G     + D    E+   D     V+ ++
Sbjct: 214 PRTRLPNGDVIAGRQVQLSCMPVACTFGFLAGAQVQLVADTTAIEECITDGLITVVVNEA 273

Query: 197 GHIVEVQGSAE 207
             I+ V  +  
Sbjct: 274 ERILSVHHTGR 284


>gi|320033002|gb|EFW14952.1| 3' exoribonuclease [Coccidioides posadasii str. Silveira]
          Length = 404

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLE 44
          +R  GR   Q R ++    +     GS  + F D T  +     E
Sbjct: 34 IRPDGRSATQFRPLTAETDILPNTNGSARIGFADGTQAIVGVKAE 78


>gi|154274968|ref|XP_001538335.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150414775|gb|EDN10137.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 337

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLE 44
          +R  GR   Q R ++    +   A GS  + F D T  +     E
Sbjct: 35 IRTDGRAATQFRPLTAETDILPGANGSARIGFADGTQAIVGVKAE 79


>gi|303322567|ref|XP_003071275.1| 3' exoribonuclease family, domain 1 containing protein
          [Coccidioides posadasii C735 delta SOWgp]
 gi|240110977|gb|EER29130.1| 3' exoribonuclease family, domain 1 containing protein
          [Coccidioides posadasii C735 delta SOWgp]
          Length = 404

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLE 44
          +R  GR   Q R ++    +     GS  + F D T  +     E
Sbjct: 34 IRPDGRSATQFRPLTAETDILPNTNGSARIGFADGTQAIVGVKAE 78


>gi|71003882|ref|XP_756607.1| hypothetical protein UM00460.1 [Ustilago maydis 521]
 gi|46096138|gb|EAK81371.1| hypothetical protein UM00460.1 [Ustilago maydis 521]
          Length = 379

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 17/43 (39%)

Query: 2  RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
          R  GR     R + +   V+  A GS  +  G T +L     E
Sbjct: 25 RSDGRDLLAFRSLDVETGVAAQANGSSRITLGGTEILCGIKAE 67


>gi|47210410|emb|CAF91678.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 260

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 19/44 (43%)

Query: 6  RQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM 49
          R++  +R + +   +   A+GS  ++ G T LL       +   
Sbjct: 40 REQADVRPVFVRCGLGSQAKGSAYMEAGATKLLCCVYGPRETER 83


>gi|119190093|ref|XP_001245653.1| hypothetical protein CIMG_05094 [Coccidioides immitis RS]
          Length = 379

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLE 44
          +R  GR   Q R ++    +     GS  + F D T  +     E
Sbjct: 34 IRPDGRSATQFRPLTAETDILPNTNGSARIGFADGTQAIVGVKAE 78


>gi|156844653|ref|XP_001645388.1| hypothetical protein Kpol_534p9 [Vanderwaltozyma polyspora DSM
          70294]
 gi|156116050|gb|EDO17530.1| hypothetical protein Kpol_534p9 [Vanderwaltozyma polyspora DSM
          70294]
          Length = 266

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLV 30
          +R  GR+  Q R I ++      + GS  +
Sbjct: 21 IRPDGRKPYQFRPIEISTDFLPNSNGSSRI 50


>gi|146097099|ref|XP_001468039.1| exosome-associated protein 2 [Leishmania infantum JPCM5]
 gi|134072405|emb|CAM71114.1| putative exosome-associated protein 2 [Leishmania infantum JPCM5]
          Length = 312

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 76/260 (29%), Gaps = 57/260 (21%)

Query: 2   RLSGRQENQMREISLTR-------RVSKYAEGS-----------CL-VKFGDTHLLTTAT 42
           R+  R  ++ R  ++ R        V+   +GS              V  G    L    
Sbjct: 28  RIDKRAFDECRLPAIVREERVGGAAVAGGTDGSLQSPASSNMASAYTVSDG--KSLAAVM 85

Query: 43  LEEKV-------------PMWIRNTKHGWITAEYGMLPR---------STGNRVKR-EAV 79
             +               P    +   G +       P          ST  R  +    
Sbjct: 86  YTDAYGTCIQCTVQGLLGPPRPEHPAAGRLNVHVE-APFVEHLSGGGTSTNYRSFQYMIA 144

Query: 80  SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ------IIIDCDVIQADGGTRTAAITGA 133
           SG      ++++  IG  L    DLS L   +      + +   ++  DGG R  ++  A
Sbjct: 145 SGNADLPLRQLEGHIGTVLDGCFDLSQLSIYEGEACWALNVSVLLLSFDGGLRAGSLHAA 204

Query: 134 WVALHDCLQHMEDCSNKFQLS---QVLKGHVAAISCGMLCG---YPIVDLDYGEDSTIDV 187
             ALH          N   +      L     A + G L G     + D    E+   D 
Sbjct: 205 LAALHKLHLPRTRLPNGDVIEGRQVQLSCMPVACTFGFLAGAQVRLVADTTAIEEHIADG 264

Query: 188 DANFVMTDSGHIVEVQGSAE 207
               V+ ++  IV V  +  
Sbjct: 265 LITVVVDEAERIVSVHHTGR 284


>gi|146086838|ref|XP_001465658.1| exosome complex exonuclease RRP45 homolog [Leishmania infantum
           JPCM5]
 gi|134069757|emb|CAM68083.1| putative exosome complex exonuclease RRP45 homolog [Leishmania
           infantum JPCM5]
 gi|322499112|emb|CBZ34184.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 363

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 56/169 (33%), Gaps = 29/169 (17%)

Query: 1   MRLSGRQENQMREISLT-----RRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK 55
           +R   R+ NQ+R + +      R V         VK G+T    T + +   P   R  K
Sbjct: 30  LRPDQREANQLRVVEMDFPLLSRDV-------VQVKCGNTVATATVSCDLVEPSPYR-PK 81

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSA----LGSRQ 111
           HG+       L      R        ++  R   I   + R L S V  +     +  R+
Sbjct: 82  HGFFEVHARQL---LHERD--PLDQFKEIKR---ISMYLTRLLSSSVLETEGLCVIPGRR 133

Query: 112 II-IDCDVI--QADGGTRTAAITGAWVALHDCLQH-MEDCSNKFQLSQV 156
           +  ID +VI    DG  +  A      AL    +  +        +   
Sbjct: 134 VWSIDAEVIIVNNDGNVQDVAQWAVMAALQHVRRPELTIRGEDVIVHPP 182


>gi|258565497|ref|XP_002583493.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237907194|gb|EEP81595.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 403

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
          +R  GR   Q R ++    +     GS  + F D T  +     E +
Sbjct: 34 IRPDGRAATQFRPLTAEADILPNTNGSARIGFADGTQAIVGVKAEVE 80


>gi|213410246|ref|XP_002175893.1| exosome subunit Rrp42 [Schizosaccharomyces japonicus yFS275]
 gi|212003940|gb|EEB09600.1| exosome subunit Rrp42 [Schizosaccharomyces japonicus yFS275]
          Length = 300

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 16/33 (48%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFG 33
          +R  GR  NQ+R  S    V   A GS  VK G
Sbjct: 22 IRNDGRAANQLRAFSGQVDVLPGANGSARVKCG 54


>gi|296823694|ref|XP_002850484.1| 3' exoribonuclease family protein [Arthroderma otae CBS 113480]
 gi|238838038|gb|EEQ27700.1| 3' exoribonuclease family protein [Arthroderma otae CBS 113480]
          Length = 415

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 4   SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
           +GR + Q R +S++     +  GS +V+ GDT  +     E      +            
Sbjct: 55  NGRTDAQFRPVSVSTGSLTHTNGSAVVRIGDTAAVCGVRAEI-----LHTDDIASWKVNS 109

Query: 64  GMLPRSTGNRV 74
            +  RST  R 
Sbjct: 110 ALSSRSTKRRK 120


>gi|295662903|ref|XP_002792005.1| conserved hypothetical protein [Paracoccidioides brasiliensis
          Pb01]
 gi|226279657|gb|EEH35223.1| conserved hypothetical protein [Paracoccidioides brasiliensis
          Pb01]
          Length = 432

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
          +R  GR   Q R ++    +   A GS  + F D T  +     E +
Sbjct: 36 IRTDGRSATQFRPLTAETDILSGANGSARIGFADGTQAIVGVKAEVE 82


>gi|322709846|gb|EFZ01421.1| 3' exoribonuclease family protein (Rrp42), putative [Metarhizium
          anisopliae ARSEF 23]
          Length = 330

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTKHG 57
          +R  GR   Q R ++    +     GS  V F D T  +     E +    IR+ +  
Sbjct: 26 IRPDGRSSTQFRPLTAETGILPGTNGSARVCFSDGTEAIVGVKAEIEKTPGIRDAEDR 83


>gi|116855852|gb|ABK30462.1| ribonuclease PH [Legionella pneumophila]
          Length = 30

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 210 TFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +FS++    ML+LA+  I  LI++QK+ 
Sbjct: 3   SFSREQLNNMLSLAEIGIPQLIEIQKNA 30


>gi|322502010|emb|CBZ37094.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 312

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 59/191 (30%), Gaps = 24/191 (12%)

Query: 39  TTATLEEKVPMWIRNTKHGWITAEYGMLPR---------STGNRVKR-EAVSGRQGGRSQ 88
            T       P    +   G +       P          ST  R  +    SG      +
Sbjct: 96  CTVQGLLG-PPRPEHPAAGRLNVHVE-APFVEHLSGGGTSTNYRSFQYMIASGNADLPLR 153

Query: 89  EIQRMIGRALRSVVDLSALGSRQ------IIIDCDVIQADGGTRTAAITGAWVALHDCLQ 142
           +++  IG  L    DLS L   +      + +   ++  DGG R  ++  A  ALH    
Sbjct: 154 QLEGHIGTVLDGCFDLSQLSIYEGEACWALNVSVLLLSFDGGLRAGSLHAALAALHKLHL 213

Query: 143 HMEDCSNKFQLS---QVLKGHVAAISCGMLCG---YPIVDLDYGEDSTIDVDANFVMTDS 196
                 N   +      L     A + G L G     + D    E+   D     V+ ++
Sbjct: 214 PRTRLPNGDVIEGRQVQLSCMPVACTFGFLAGAQVRLVADTTAIEEHIADGLITVVVDEA 273

Query: 197 GHIVEVQGSAE 207
             IV V  +  
Sbjct: 274 ERIVSVHHTGR 284


>gi|325096264|gb|EGC49574.1| 3' exoribonuclease [Ajellomyces capsulatus H88]
          Length = 421

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
          +R  GR   Q R ++    +   A GS  + F D T  +     E +
Sbjct: 35 IRTDGRAATQFRPLTAETDILPGANGSARIGFADGTQAIVGVKAEVE 81


>gi|225557559|gb|EEH05845.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 425

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
          +R  GR   Q R ++    +   A GS  + F D T  +     E +
Sbjct: 35 IRTDGRAATQFRPLTAETDILPGANGSARIGFADGTQAIVGVKAEVE 81


>gi|116199467|ref|XP_001225545.1| hypothetical protein CHGG_07889 [Chaetomium globosum CBS 148.51]
 gi|88179168|gb|EAQ86636.1| hypothetical protein CHGG_07889 [Chaetomium globosum CBS 148.51]
          Length = 189

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 3/63 (4%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTKHGWI 59
          +R  GR   Q R +     +     GS  + F D T  +     E  V    +      +
Sbjct: 27 IRPDGRSPTQFRPLVAETGILPGTNGSARICFADGTEAIVGVKAE--VERTAQRPGEDTV 84

Query: 60 TAE 62
            E
Sbjct: 85 FFE 87


>gi|71409477|ref|XP_807083.1| exosome-associated protein 1 [Trypanosoma cruzi strain CL Brener]
 gi|70871001|gb|EAN85232.1| exosome-associated protein 1, putative [Trypanosoma cruzi]
          Length = 383

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 13/73 (17%)

Query: 1  MRLSGRQENQMREISLTRRVSKYA-------EGSCL-VKFGDTHLLTTATLEEKVPMWIR 52
          +R  GR   Q R  ++    S  A       +GSC+ V+ G T +L  AT     P  I 
Sbjct: 23 VRGDGRTLTQRRPFTIRTNYSAGASIVDVEYDGSCVEVQCGATTVLAAAT-----PSIIE 77

Query: 53 NTKHGWITAEYGM 65
           ++ G   +   M
Sbjct: 78 LSESGEAASRKRM 90


>gi|225684791|gb|EEH23075.1| conserved hypothetical protein [Paracoccidioides brasiliensis
          Pb03]
          Length = 430

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
          +R  GR   Q R ++    +   A GS  + F D T  +     E +
Sbjct: 37 IRTDGRSATQFRPLTAETDILSGANGSARIGFADGTQAIVGVKAEVE 83


>gi|145231729|ref|XP_001399338.1| 3' exoribonuclease family protein (Rrp42) [Aspergillus niger CBS
          513.88]
 gi|134056242|emb|CAK37499.1| unnamed protein product [Aspergillus niger]
          Length = 385

 Score = 44.7 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
          +R  GR   Q R ++    +     GS  V F D T  +     E +
Sbjct: 35 IRPDGRSPTQFRPLTAETDILPGTNGSARVGFADGTQAIVGVKAEVE 81


>gi|170592347|ref|XP_001900930.1| 3' exoribonuclease family, domain 2 containing protein [Brugia
          malayi]
 gi|158591625|gb|EDP30230.1| 3' exoribonuclease family, domain 2 containing protein [Brugia
          malayi]
          Length = 110

 Score = 44.7 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN 53
          +R+ GR+ ++ RE+ +         GSCLV  G+T +    +     P   R 
Sbjct: 44 VRVDGRKCDEFREVKVIVG---SELGSCLVMLGETKVSAQVSCSLVEPSTTRG 93


>gi|270692628|ref|ZP_06222937.1| DNA (cytosine-5-)-methyltransferase [Haemophilus influenzae
          HK1212]
 gi|270316038|gb|EFA28070.1| DNA (cytosine-5-)-methyltransferase [Haemophilus influenzae
          HK1212]
          Length = 181

 Score = 44.7 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 2  RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK 46
          R+ GR  + +R + +   V     GS +   G+T  L  ATL  +
Sbjct: 39 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTE 83


>gi|299750147|ref|XP_001836568.2| cytidylyltransferase [Coprinopsis cinerea okayama7#130]
 gi|298408765|gb|EAU85276.2| cytidylyltransferase [Coprinopsis cinerea okayama7#130]
          Length = 646

 Score = 44.7 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 11/56 (19%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKF-----------GDTHLLTTATLEEK 46
           R+ GR  ++ R ++L   V+  A GS  V             G T ++    LE +
Sbjct: 353 RIDGRALDEYRIVALETGVAPLANGSARVSIGGRTSVEGNGGGGTEVVAATKLEVE 408


>gi|317150198|ref|XP_001823860.2| 3' exoribonuclease family protein [Aspergillus oryzae RIB40]
          Length = 409

 Score = 44.7 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
          +R +GR  +Q R  S       +  GS +V+ GDT  +   
Sbjct: 47 IRANGRAPSQFRVTSANTGSLTHTNGSAVVRLGDTTAVCGV 87


>gi|83772599|dbj|BAE62727.1| unnamed protein product [Aspergillus oryzae]
          Length = 414

 Score = 44.7 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
          +R +GR  +Q R  S       +  GS +V+ GDT  +   
Sbjct: 47 IRANGRAPSQFRVTSANTGSLTHTNGSAVVRLGDTTAVCGV 87


>gi|289620387|emb|CBI53245.1| unnamed protein product [Sordaria macrospora]
          Length = 387

 Score = 44.7 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPM 49
          +R  GR   Q R +     +     GS  + F D T  +     E +   
Sbjct: 27 IRPDGRSPTQFRPLVAETGILPGTNGSARICFADGTEAIVGVKAEVERTR 76


>gi|169608692|ref|XP_001797765.1| hypothetical protein SNOG_07432 [Phaeosphaeria nodorum SN15]
 gi|111063778|gb|EAT84898.1| hypothetical protein SNOG_07432 [Phaeosphaeria nodorum SN15]
          Length = 368

 Score = 44.7 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
           +R + R  +  R   +      +A GS +V+ G+T ++   
Sbjct: 74  LRANARSAHAFRRPGINTGSLTHANGSAVVRLGNTSVVCGV 114


>gi|226286640|gb|EEH42153.1| conserved hypothetical protein [Paracoccidioides brasiliensis
          Pb18]
          Length = 402

 Score = 44.7 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
          +R  GR   Q R ++    +   A GS  + F D T  +     E +
Sbjct: 37 IRTDGRSATQFRPLTAETDILSGANGSARIGFADGTQAIVGVKAEVE 83


>gi|71001928|ref|XP_755645.1| 3' exoribonuclease family protein (Rrp42) [Aspergillus fumigatus
          Af293]
 gi|66853283|gb|EAL93607.1| 3' exoribonuclease family protein (Rrp42), putative [Aspergillus
          fumigatus Af293]
 gi|159129702|gb|EDP54816.1| 3' exoribonuclease family protein (Rrp42), putative [Aspergillus
          fumigatus A1163]
          Length = 390

 Score = 44.7 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
          +R  GR   Q R ++    +     GS  V F D T  +     E +
Sbjct: 35 IRPDGRSPTQFRPLTAETDILPGTNGSARVGFADGTQAIVGVKAEVE 81


>gi|131888895|ref|NP_001076540.1| exosome complex exonuclease RRP46 isoform 2 [Danio rerio]
 gi|94733275|emb|CAK04296.1| novel protein similar to mouse and human exosome component 5
           (EXOSC5) [Danio rerio]
          Length = 128

 Score = 44.7 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 13/115 (11%)

Query: 11  MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
           +RE    + +    +GS     GDT +L       +V   +    +   T E  + P   
Sbjct: 14  LREYGSEQSLLSRPDGSSTFVQGDTSILAGVYGPAEVK--VSKEIYDRATVEVLIQP--- 68

Query: 71  GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
                     G    R +  ++ +     + + L+      + +   V+  DG  
Sbjct: 69  --------KMGLPSVRERAREQCVRETCEAALLLTLHPRSSLTVILQVVHDDGSV 115


>gi|260948598|ref|XP_002618596.1| hypothetical protein CLUG_02055 [Clavispora lusitaniae ATCC 42720]
 gi|238848468|gb|EEQ37932.1| hypothetical protein CLUG_02055 [Clavispora lusitaniae ATCC 42720]
          Length = 239

 Score = 44.7 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 72/243 (29%), Gaps = 32/243 (13%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
             +        +GS  +  G+T ++ + T   +            +             R
Sbjct: 5   FHVELSPLSQVDGSARLTAGNTKVVVSVTGPIEPKPRQELPTQASLEIVV---------R 55

Query: 74  VKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD----------- 122
             R   + ++      ++ ++   L+S +       + I +    +  D           
Sbjct: 56  PSRGLAATKEKV----LEDLLRSVLQSAIVRYKYPRQLIQVVVQFLATDVDAEGVVLVSG 111

Query: 123 --GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
              G  TA       AL+ C   + D +     S        A    ++   P+  L   
Sbjct: 112 DSAGGETAC-NELSAALNCCFFALVDANVALFNSFAAVALAVAADGALVPNPPLRALKTA 170

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLI-KLQKDVIS 239
               + V  +     +  ++  + S    +FS+    A++  A     ++    Q+  + 
Sbjct: 171 ASHHV-VCFDVRSRKASKLLLAESSG---SFSEQDLLAVVERASTLCEEIHTSYQRPAVE 226

Query: 240 NEV 242
            +V
Sbjct: 227 RKV 229


>gi|119481487|ref|XP_001260772.1| 3' exoribonuclease family protein (Rrp42), putative [Neosartorya
          fischeri NRRL 181]
 gi|119408926|gb|EAW18875.1| 3' exoribonuclease family protein (Rrp42), putative [Neosartorya
          fischeri NRRL 181]
          Length = 390

 Score = 44.3 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
          +R  GR   Q R ++    +     GS  V F D T  +     E +
Sbjct: 35 IRPDGRSPTQFRPLTAETDILPGTNGSARVGFADGTQAIVGVKAEVE 81


>gi|67540148|ref|XP_663848.1| hypothetical protein AN6244.2 [Aspergillus nidulans FGSC A4]
 gi|40739438|gb|EAA58628.1| hypothetical protein AN6244.2 [Aspergillus nidulans FGSC A4]
 gi|259479547|tpe|CBF69869.1| TPA: 3' exoribonuclease family protein (Rrp42), putative
          (AFU_orthologue; AFUA_2G13130) [Aspergillus nidulans
          FGSC A4]
          Length = 391

 Score = 44.3 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
          +R  GR   Q R ++    +     GS  V F D T  +     E +
Sbjct: 35 IRPDGRSPTQFRPLTAETDILPGTNGSARVGFADGTQAIVGVKAEVE 81


>gi|85080121|ref|XP_956484.1| hypothetical protein NCU01806 [Neurospora crassa OR74A]
 gi|18376105|emb|CAD21171.1| related to rRNA processing protein [Neurospora crassa]
 gi|28917550|gb|EAA27248.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 391

 Score = 44.3 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPM 49
          +R  GR   Q R +     +     GS  + F D T  +     E +   
Sbjct: 27 IRPDGRSPTQFRPLVAETGILPGTNGSARICFADGTEAIVGVKAEVERTR 76


>gi|308809605|ref|XP_003082112.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp42 (ISS)
           [Ostreococcus tauri]
 gi|116060579|emb|CAL55915.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp42 (ISS)
           [Ostreococcus tauri]
          Length = 314

 Score = 44.3 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 75/279 (26%), Gaps = 39/279 (13%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR     R + +   V   A GSC V  G+T  +     +         +  G I  
Sbjct: 17  REDGRGRATRRALRMAIGVVPNANGSCAVTLGETSCVAAVRCDVTAIEAWEASDVGAIVL 76

Query: 62  EYGMLPRSTG--------NRVKREAVSGRQGGRSQEIQRMIGRA--------------LR 99
                  +T             R  +     GR + +    GRA              LR
Sbjct: 77  RVDASSIATTRAGRAAAVGETLRRRLESVVAGRERGVSDASGRASGSGVDAWDGGGIDLR 136

Query: 100 SVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQ---- 155
           S+          + +D       G    A       AL D               +    
Sbjct: 137 SLCVRPGRARWTLAVDAVCACDRGSMLDALSVAVRGALADTKIPKVSLVGVGSDGEGGEL 196

Query: 156 VLKGHVAAI------------SCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQ 203
            +     A             +   +  + +VD    E++  +   +  +   G +   +
Sbjct: 197 EIDDDPDACTRVDVSRCGVVATTTKIGKHGVVDATDEEEACAEASMSVGVDRDGMVCG-E 255

Query: 204 GSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
            +    T  +    AM  L+     +LI+     ++  V
Sbjct: 256 FTTGGETLDRGTADAMRKLSCRVGVELIEAMDAFLATAV 294


>gi|115384202|ref|XP_001208648.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114196340|gb|EAU38040.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 377

 Score = 44.3 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
          +R  GR   Q R ++    +     GS  V F D T  +     E +
Sbjct: 34 IRPDGRSPTQFRPLTAETDILPGTNGSARVGFADGTQAIVGVKAEVE 80


>gi|115386760|ref|XP_001209921.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114190919|gb|EAU32619.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 412

 Score = 44.3 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 10/91 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE----EKVPMWIRNTKH 56
           +R +GR  +Q R  S       +  GS +V+ GDT  +     E    E +  W      
Sbjct: 47  IRANGRAPSQFRVTSANTGSLTHTNGSAVVRIGDTTAVCGVRAEILPTEDIASW------ 100

Query: 57  GWITAEYGMLPRSTGNRVKREAVSGRQGGRS 87
               +E+     +   R K +  +      S
Sbjct: 101 SVSRSEFSSAASANNKRRKLDDPTRAPAETS 131


>gi|326469677|gb|EGD93686.1| 3' exoribonuclease [Trichophyton tonsurans CBS 112818]
 gi|326478793|gb|EGE02803.1| 3' exoribonuclease [Trichophyton equinum CBS 127.97]
          Length = 379

 Score = 44.3 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
          +R  GR   Q R ++    +   A GS  + F D T  +     E +
Sbjct: 34 IRPDGRSATQFRTLTAETSIVPNANGSARIGFADGTQAIVGVKAEVE 80


>gi|157869515|ref|XP_001683309.1| exosome complex exonuclease RRP45 homolog [Leishmania major strain
           Friedlin]
 gi|68224193|emb|CAJ04881.1| putative exosome complex exonuclease RRP45 [Leishmania major strain
           Friedlin]
          Length = 363

 Score = 44.3 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 51/304 (16%), Positives = 83/304 (27%), Gaps = 85/304 (27%)

Query: 1   MRLSGRQENQMREISLT-----RRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK 55
           +R   R  NQ+R + +      R V         VK G+T    T + +   P   R  K
Sbjct: 30  LRPDQRDANQLRVVEIDFPLLSRDV-------VQVKCGNTVATATISCDLVEPSPYR-PK 81

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR-SVVDLSAL----GSR 110
           HG+       L          E     Q    + I   + R L  SV++  +L    G R
Sbjct: 82  HGFFEVHARQL--------LNERDPLDQSKEIKRISMYLTRLLSGSVLETESLCVIPGRR 133

Query: 111 QIIIDCDVI--QADGGTRTAAITGAWVALHDCLQH-MEDCSNKFQLSQV-LKGHV----- 161
              ID +VI    DG  +  A      AL    +  +        +     +  V     
Sbjct: 134 VWSIDAEVIIVNNDGNAQDVAQWAVMTALQHVRRPELTIRGEDVIVHPPHERDPVPLPLH 193

Query: 162 ---------------------------------AAISCGMLCGY---------------- 172
                                            A  S G                     
Sbjct: 194 HIPLSFTFAVCANPQEVQLAVRAATLRSAHAPRAGASSGANADEGDGEAEELGWSSDALQ 253

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            +VD    E +      +  +   GH+  ++  A+    S  +    + +A      L+ 
Sbjct: 254 VVVDPSLEEATAAACTVSVALNGEGHVCSLEK-ADGCYVSIAYLEQCMEIATKLTQALLS 312

Query: 233 LQKD 236
             K+
Sbjct: 313 QMKE 316


>gi|145606074|ref|XP_370186.2| hypothetical protein MGG_06683 [Magnaporthe oryzae 70-15]
 gi|145013801|gb|EDJ98442.1| hypothetical protein MGG_06683 [Magnaporthe oryzae 70-15]
          Length = 393

 Score = 44.3 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 1/57 (1%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTKH 56
          +R  GR   Q R ++    +     GS  + F D T  +     E +      N   
Sbjct: 28 IRPDGRTATQFRPLTAETGILPGTNGSARICFADGTEAIVGVKAEVEKTRLAYNHGE 84


>gi|289672871|ref|ZP_06493761.1| ribonuclease PH [Pseudomonas syringae pv. syringae FF5]
          Length = 30

 Score = 43.9 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 211 FSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
           F  +   AML LA+  + +L +LQ+  +++
Sbjct: 1   FQPEELNAMLALAQKGMTELFELQRAALAD 30


>gi|330981095|gb|EGH79198.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 137

 Score = 43.9 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 12/129 (9%)

Query: 14  ISLTRR-VSKYAEGSCLVKFGDTH-LLTTATLEEKVP----MWIRNTKHGWITAEYGMLP 67
           ++L    +++ A G+ LV   D   +L T    ++       +  +  +   T   G +P
Sbjct: 15  VTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIP 74

Query: 68  RSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT 127
              G   KRE   GR   +     R+I R +R +     +   Q++              
Sbjct: 75  ---GGFFKRE---GRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDI 128

Query: 128 AAITGAWVA 136
           AA+ G   A
Sbjct: 129 AAMIGTSAA 137


>gi|261199498|ref|XP_002626150.1| 3' exoribonuclease [Ajellomyces dermatitidis SLH14081]
 gi|239594358|gb|EEQ76939.1| 3' exoribonuclease [Ajellomyces dermatitidis SLH14081]
          Length = 436

 Score = 43.9 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
          +R  GR   Q R ++    +   A GS  + F D T  +     E +
Sbjct: 39 VRTDGRSATQFRPLTAETDILPGANGSARIGFADGTQAIVGVKAEVE 85


>gi|327354674|gb|EGE83531.1| 3' exoribonuclease [Ajellomyces dermatitidis ATCC 18188]
          Length = 440

 Score = 43.9 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
          +R  GR   Q R ++    +   A GS  + F D T  +     E +
Sbjct: 39 VRTDGRSATQFRPLTAETDILPGANGSARIGFADGTQAIVGVKAEVE 85


>gi|239615524|gb|EEQ92511.1| 3' exoribonuclease [Ajellomyces dermatitidis ER-3]
          Length = 441

 Score = 43.9 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
          +R  GR   Q R ++    +   A GS  + F D T  +     E +
Sbjct: 39 VRTDGRSATQFRPLTAETDILPGANGSARIGFADGTQAIVGVKAEVE 85


>gi|322491850|emb|CBZ27123.1| exosome complex exonuclease RRP45 homolog,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 363

 Score = 43.9 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 56/169 (33%), Gaps = 28/169 (16%)

Query: 1   MRLSGRQENQMREISLT-----RRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK 55
           +R   R+ NQ+R + +      R V         VK G+T    T + +   P   R  K
Sbjct: 30  LRPDQREANQLRVVEMDFPLLSRDV-------VQVKCGNTVATATVSCDLVEPSPYR-PK 81

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR-SVVDLSAL----GSR 110
           HG+       L      R        ++  R   I   + R L  SV++   L    G R
Sbjct: 82  HGFFEVHARQL---LHERD--PLDQLKEIKR---ISMYLTRLLSGSVLETEGLCVIPGRR 133

Query: 111 QIIIDCDVI--QADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL 157
              ID +VI    DG  +  A      AL    +       +  +    
Sbjct: 134 VWSIDAEVIIVNNDGNVQDVAQWAVMAALQHVRRPELTIRGEDVVVHPP 182


>gi|169774569|ref|XP_001821752.1| 3' exoribonuclease family protein (Rrp42) [Aspergillus oryzae
           RIB40]
 gi|83769615|dbj|BAE59750.1| unnamed protein product [Aspergillus oryzae]
          Length = 385

 Score = 43.9 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEKVPMWIRNTKHGWI 59
           +R  GR   Q R ++    +     GS  V F D T  +     E          +   +
Sbjct: 35  IRPDGRSATQFRPLTAETDILPGTNGSARVGFADGTQAIVGVKAE---------VEKTVV 85

Query: 60  TAEYGMLPRSTGNR----VKREAVSGRQGGR------SQEI 90
           +A+   LP+ T          EA  G   G       S EI
Sbjct: 86  SADALKLPQQTQEEYVGNNDGEANQGSSSGHGSWVQMSIEI 126


>gi|154337667|ref|XP_001565066.1| exosome complex exonuclease RRP45 homolog [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134062106|emb|CAM45222.1| putative exosome complex exonuclease RRP45 homolog [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 363

 Score = 43.9 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 56/169 (33%), Gaps = 29/169 (17%)

Query: 1   MRLSGRQENQMREISL-----TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTK 55
           +R   R+ NQ+R + +     +R V         VK G+T    T + +   P   R  K
Sbjct: 30  LRPDQREANQLRVVEINFPLLSRDV-------VQVKCGNTVATATVSCDLVEPSPYR-PK 81

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR-SVVDLSAL----GSR 110
           HG+       L      R        ++  R   I   + R    SV++   L    G R
Sbjct: 82  HGFFEVHARQL---LHERD--PLDQSKEIKR---ISMYLTRLFTGSVLETEGLCIIPGRR 133

Query: 111 QIIIDCDVI--QADGGTRTAAITGAWVALHDCLQH-MEDCSNKFQLSQV 156
              ID +VI    DG  +         AL    +  +    +   +   
Sbjct: 134 VWSIDAEVIIMNNDGNVQDVGQWAVMAALQHVRRPELTIRGDDVIVHPP 182


>gi|302682326|ref|XP_003030844.1| hypothetical protein SCHCODRAFT_16010 [Schizophyllum commune H4-8]
 gi|300104536|gb|EFI95941.1| hypothetical protein SCHCODRAFT_16010 [Schizophyllum commune H4-8]
          Length = 341

 Score = 43.5 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 53/151 (35%), Gaps = 18/151 (11%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKF-------GDTHLLTTATLE-EKVPMWIRN 53
           RL GR  ++ REI L   V+  A GS  +         G T +     LE   V    R 
Sbjct: 24  RLDGRALHEFREIQLETGVAPLASGSARLTIGAGKDGSGGTEVWAATKLEVVDVADGERQ 83

Query: 54  TKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR-ALRSVVDLSALGSRQI 112
                +T      P  T       A+   Q   +  +   +   +L     L+ + +++ 
Sbjct: 84  GVVCSVTCSPQAYPHLTA-----PALDDLQADLTSLLDTTLAHPSLLPA-SLTIIPAKKA 137

Query: 113 I---IDCDVIQADGGTRTAAITGAWVALHDC 140
               +DC V+ A G    A    A  AL D 
Sbjct: 138 WLLALDCVVLAAAGSVPDALFMAARAALWDT 168


>gi|84998310|ref|XP_953876.1| exosome ribonuclease PH (Rrp42 ) [Theileria annulata]
 gi|65304873|emb|CAI73198.1| exosome ribonuclease PH (Rrp42 homologue), putative [Theileria
          annulata]
          Length = 268

 Score = 43.5 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT-----ATLEEKVP 48
          +RL GR+  Q+  +++   +S  A GS  V FGD  + TT      + E+  P
Sbjct: 12 LRLDGRKFEQLYSLNIIPNISSIAHGSSQVTFGDNIVQTTVNFSIVSPEDSTP 64


>gi|238599743|ref|XP_002394962.1| hypothetical protein MPER_05068 [Moniliophthora perniciosa FA553]
 gi|215464853|gb|EEB95892.1| hypothetical protein MPER_05068 [Moniliophthora perniciosa FA553]
          Length = 94

 Score = 43.5 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 6/73 (8%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAE-GSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
          +RL GR   +MR    T      AE G+     G T +L     +  V         G I
Sbjct: 22 LRLDGRLPFEMR----TPDFIFSAELGTVECALGKTRVLANVDAK-MVKPPPERPFEGLI 76

Query: 60 TAEYGMLPRSTGN 72
          T    + P ++  
Sbjct: 77 TIHSEISPMASSE 89


>gi|157874377|ref|XP_001685672.1| exosome-associated protein 2 [Leishmania major strain Friedlin]
 gi|68128744|emb|CAJ08877.1| putative exosome-associated protein 2 [Leishmania major strain
           Friedlin]
          Length = 312

 Score = 43.5 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 58/191 (30%), Gaps = 24/191 (12%)

Query: 39  TTATLEEKVPMWIRNTKHGWITAEYGMLPR---------STGNRVKR-EAVSGRQGGRSQ 88
            T       P        G +       P          ST  R  +    SG      +
Sbjct: 96  CTVQGLLG-PPRPEQPAAGRLNVHVE-APFVEHLSGGATSTNYRSFQYMIASGNADLPLR 153

Query: 89  EIQRMIGRALRSVVDLSAL----GSR--QIIIDCDVIQADGGTRTAAITGAWVALHDCLQ 142
           +++  IG  L    DLS L    G     + +   ++  DGG R  ++  A  ALH    
Sbjct: 154 QLEGYIGTVLDGCFDLSQLSIYAGEACWVLKVSVLLLSVDGGLRAGSLHAALAALHKLHL 213

Query: 143 HMEDCSNKFQLS---QVLKGHVAAISCGMLCG---YPIVDLDYGEDSTIDVDANFVMTDS 196
                 N   +      L     A + G L G     + D    E+   D     V+ ++
Sbjct: 214 PRIRLPNGDVIEGRQVQLSCMPVACTFGFLAGAQVRLVADTTAIEEHVADGLITVVVDEA 273

Query: 197 GHIVEVQGSAE 207
             I+ V  +  
Sbjct: 274 ERILSVHHTGR 284


>gi|116855762|gb|ABK30402.1| ribonuclease PH [Legionella pneumophila]
 gi|116855765|gb|ABK30404.1| ribonuclease PH [Legionella pneumophila]
 gi|116855768|gb|ABK30406.1| ribonuclease PH [Legionella pneumophila]
 gi|116855771|gb|ABK30408.1| ribonuclease PH [Legionella pneumophila]
 gi|116855774|gb|ABK30410.1| ribonuclease PH [Legionella pneumophila]
 gi|116855777|gb|ABK30412.1| ribonuclease PH [Legionella pneumophila]
 gi|116855780|gb|ABK30414.1| ribonuclease PH [Legionella pneumophila]
 gi|116855783|gb|ABK30416.1| ribonuclease PH [Legionella pneumophila]
 gi|116855786|gb|ABK30418.1| ribonuclease PH [Legionella pneumophila]
 gi|116855789|gb|ABK30420.1| ribonuclease PH [Legionella pneumophila]
 gi|116855792|gb|ABK30422.1| ribonuclease PH [Legionella pneumophila]
 gi|116855795|gb|ABK30424.1| ribonuclease PH [Legionella pneumophila]
 gi|116855798|gb|ABK30426.1| ribonuclease PH [Legionella pneumophila]
 gi|116855801|gb|ABK30428.1| ribonuclease PH [Legionella pneumophila]
 gi|116855804|gb|ABK30430.1| ribonuclease PH [Legionella pneumophila]
 gi|116855807|gb|ABK30432.1| ribonuclease PH [Legionella pneumophila]
 gi|116855810|gb|ABK30434.1| ribonuclease PH [Legionella pneumophila]
 gi|116855813|gb|ABK30436.1| ribonuclease PH [Legionella pneumophila]
 gi|116855816|gb|ABK30438.1| ribonuclease PH [Legionella pneumophila]
 gi|116855819|gb|ABK30440.1| ribonuclease PH [Legionella pneumophila]
 gi|116855822|gb|ABK30442.1| ribonuclease PH [Legionella pneumophila]
 gi|116855825|gb|ABK30444.1| ribonuclease PH [Legionella pneumophila]
 gi|116855828|gb|ABK30446.1| ribonuclease PH [Legionella pneumophila]
 gi|116855831|gb|ABK30448.1| ribonuclease PH [Legionella pneumophila]
 gi|116855834|gb|ABK30450.1| ribonuclease PH [Legionella pneumophila]
 gi|116855837|gb|ABK30452.1| ribonuclease PH [Legionella pneumophila]
 gi|116855840|gb|ABK30454.1| ribonuclease PH [Legionella pneumophila]
 gi|116855843|gb|ABK30456.1| ribonuclease PH [Legionella pneumophila]
 gi|116855846|gb|ABK30458.1| ribonuclease PH [Legionella pneumophila]
 gi|116855849|gb|ABK30460.1| ribonuclease PH [Legionella pneumophila]
          Length = 30

 Score = 43.5 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 20/28 (71%)

Query: 210 TFSQDHFFAMLNLAKDRIADLIKLQKDV 237
           +F+++   +ML+LA+  I  LI++QK+ 
Sbjct: 3   SFNREQLNSMLSLAEIGIPQLIEIQKNA 30


>gi|302415791|ref|XP_003005727.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261355143|gb|EEY17571.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 373

 Score = 43.5 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLE 44
          +R  GR   Q R ++    +     GS  V F D T  +     E
Sbjct: 28 IRPDGRTPTQFRPLTAETGILPGTNGSARVCFSDGTEAIVGIKAE 72


>gi|310793767|gb|EFQ29228.1| exosome complex subunit Rrp46 [Glomerella graminicola M1.001]
          Length = 243

 Score = 43.5 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 59/215 (27%), Gaps = 24/215 (11%)

Query: 21  SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80
              A+GS     G   ++++     +V     N     +              V R A  
Sbjct: 14  LPRADGSATFSRGGYCVVSSVNGPMEVQRRDENPFESVVDV------------VVRPAAG 61

Query: 81  -GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI---QADGGTRTAAITGAWVA 136
            G  G R  E   ++  ALR ++ +       I I   V    Q D          + + 
Sbjct: 62  VGGTGERQLE--NILQSALRQLIPVKNFPRCLIQITLQVTETPQNDYANSKVVQAQSSLT 119

Query: 137 LHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG--YPIVDLDYGEDSTIDVDANFVMT 194
           L   L H     +    +  LK      +  +L      I D    E            T
Sbjct: 120 LLPALFH-SAVLSLLSAAVPLKAIATCTTLAILEDGSKIIADPSPLEADHAKSLHVLSFT 178

Query: 195 DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIAD 229
               ++  +       F+   +  +++  +     
Sbjct: 179 SQDDLLLAE---SEGAFTIAEWDKVVSTGQKVCGQ 210


>gi|45198627|ref|NP_985656.1| AFR109Wp [Ashbya gossypii ATCC 10895]
 gi|44984637|gb|AAS53480.1| AFR109Wp [Ashbya gossypii ATCC 10895]
          Length = 237

 Score = 43.5 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 29/147 (19%)

Query: 16  LTRRVSKYAEGSCLVKFG----DTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTG 71
           +   +   A GS  ++      +T L+TTA      P+    T    I+  +  +   T 
Sbjct: 46  IQDGMIVNANGSSYLEVKAETHNTLLVTTAYGPR--PIRGSFTSRAAISVHFKEV---TL 100

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT---- 127
            R           G   E+   +     + +++       I I  ++IQ     R     
Sbjct: 101 ERWD--------SGEVTEMCNFLNTVFSAAINVERYPKSGIDIFLNLIQHS-NVRDDKTL 151

Query: 128 -------AAITGAWVALHDCLQHMEDC 147
                    I+G  +AL D    ++D 
Sbjct: 152 NLAEVLPDCISGITLALMDAGIELKDV 178


>gi|238496865|ref|XP_002379668.1| 3' exoribonuclease family protein (Rrp42), putative [Aspergillus
          flavus NRRL3357]
 gi|220694548|gb|EED50892.1| 3' exoribonuclease family protein (Rrp42), putative [Aspergillus
          flavus NRRL3357]
          Length = 358

 Score = 43.5 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
          +R  GR   Q R ++    +     GS  V F D T  +     E +
Sbjct: 35 IRPDGRSATQFRPLTAETDILPGTNGSARVGFADGTQAIVGVKAEVE 81


>gi|322494445|emb|CBZ29747.1| putative exosome-associated protein 2 [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 312

 Score = 43.5 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 72/263 (27%), Gaps = 63/263 (23%)

Query: 2   RLSGRQENQMREISLTR-------RVSKYAEGS--------------------------- 27
           R+  R  ++ R  ++ R        V+  A GS                           
Sbjct: 28  RIDKRAFDEYRLPTIVREERFGGPAVASAAGGSPQGPVSGSMASTSAVPDGKNLAAIMYT 87

Query: 28  -CLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR---------STGNRVKR- 76
                   T +  T       P        G +       P          ST  R  + 
Sbjct: 88  DAY----GTCIQCTVQGLLG-PPRPEQPAAGRLNVHVE-APFVEHLSGGAASTNYRSFQY 141

Query: 77  EAVSGRQGGRSQEIQRMIGRALRSVVDLSAL----GSR--QIIIDCDVIQADGGTRTAAI 130
              SG      ++++  IG  L    DLS L    G     + +   ++  DGG R  ++
Sbjct: 142 MIASGNADLPLRQLEGHIGTVLDGCFDLSQLSIYEGEACWVLKVSVLLLSFDGGLRAGSL 201

Query: 131 TGAWVALHDCLQHMEDCSNKFQLS---QVLKGHVAAISCGMLCG---YPIVDLDYGEDST 184
                ALH          N   +      L     A + G L G     + D    E+  
Sbjct: 202 HAVLAALHKLHLPRTRLPNGDVIEGRQVQLSCMPVACTFGFLAGAQVRLVADTTAIEEHV 261

Query: 185 IDVDANFVMTDSGHIVEVQGSAE 207
            D      + ++  IV V  +  
Sbjct: 262 ADGLITVAVNETERIVSVHHTGR 284


>gi|322815775|gb|EFZ24333.1| exosome-associated protein 1, putative [Trypanosoma cruzi]
          Length = 383

 Score = 43.2 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 8/51 (15%)

Query: 1  MRLSGRQENQMREISLTRRVSKYA-------EGSCL-VKFGDTHLLTTATL 43
          +R  GR   Q R  ++    S  A       +GSC+ V+ G T +L  AT 
Sbjct: 23 VRGDGRTLTQRRPFAIRTNYSAGASIVEVEYDGSCVEVQCGATTVLAAATP 73


>gi|303282535|ref|XP_003060559.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458030|gb|EEH55328.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 137

 Score = 43.2 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 13/104 (12%)

Query: 37  LLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGR 96
           +        ++    ++T    I                    SG      +E +  I R
Sbjct: 5   VYAAVYGPMEIRAGKQDTDKLVIEVVVR-------------PASGAPSSADKEREVTIRR 51

Query: 97  ALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDC 140
           AL  VV  +A     I +    + +DGG     +  A  AL D 
Sbjct: 52  ALEHVVKTAAHPRCGIRVVLQTVSSDGGIDAILLNAACAALIDA 95


>gi|50308723|ref|XP_454365.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643500|emb|CAG99452.1| KLLA0E09219p [Kluyveromyces lactis]
          Length = 264

 Score = 43.2 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKF-GDTHLLTTAT 42
          +R  GR  +Q R + ++      + GS  V   G +  + +  
Sbjct: 21 LRPDGRGPHQFRPLEVSTDFLPNSNGSSRVILSGGSECIVSVK 63


>gi|322708621|gb|EFZ00198.1| hypothetical protein MAA_03975 [Metarhizium anisopliae ARSEF 23]
          Length = 254

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 60/222 (27%), Gaps = 42/222 (18%)

Query: 21  SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80
              A+GS         +        + P    N     I              V R A  
Sbjct: 14  LPNADGSATFSNCGYAVTAAVNGPIEAPRRDENPFEALIDV------------VVRPAA- 60

Query: 81  GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT------------- 127
           G  G   ++I+ M+  ALR ++ +       I +   +++A                   
Sbjct: 61  GVGGTAERQIESMLQAALRQLIPIRNFPRCTIQVTLQIMEAPENAYQNTKLLQPQQNLAI 120

Query: 128 --AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTI 185
             A    A + L      ++  +    ++                G  I+D    E +  
Sbjct: 121 IPALFHAAILGLLTAAIPLKTIATATTIAIP-----------AGSGALIIDPSTEESAKA 169

Query: 186 DVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
                   T    ++  + S    +FS + +  +L   +   
Sbjct: 170 TSLHALAFTSHDELLLAESSG---SFSIEDWDRVLETGQRVC 208


>gi|207093020|ref|ZP_03240807.1| polynucleotide phosphorylase/polyadenylase [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 102

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 11/90 (12%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+K A  S L + G T +L +  +E +      +     +  ++     + G   K    
Sbjct: 20  VAKQATSSLLYRLGKTIILASVCVERE----PVSEDFLPLVVQFLEKSYAAG---KIPGG 72

Query: 80  SGRQGGRSQ--EI--QRMIGRALRSVVDLS 105
             ++ GR+Q  EI   R+I R LR +    
Sbjct: 73  FVKREGRAQDFEILTSRLIDRTLRPLFPKD 102


>gi|326474396|gb|EGD98405.1| 3' exoribonuclease [Trichophyton tonsurans CBS 112818]
          Length = 415

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 4  SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
          +GR + Q R  S++     +  GS +V+ GDT  +   
Sbjct: 55 NGRTDTQFRPASVSTGSLTHTNGSAVVRMGDTAAVCGV 92


>gi|255932009|ref|XP_002557561.1| Pc12g07260 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582180|emb|CAP80353.1| Pc12g07260 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 384

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
          +R  GR   Q R +S    +     GS  + F D T  +     E +
Sbjct: 35 IRPDGRSPTQFRPLSAETTILPGTNGSARIGFADGTQAIVGVKAEVE 81


>gi|153844108|ref|ZP_01993625.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           AQ3810]
 gi|149745259|gb|EDM56510.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
           AQ3810]
          Length = 162

 Score = 42.8 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL 43
           R+  R+++ +R + +   V     GS L   G+T  L TATL
Sbjct: 103 RIDSREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATL 144


>gi|171060409|ref|YP_001792758.1| outer membrane adhesin-like protein [Leptothrix cholodnii SP-6]
 gi|170777854|gb|ACB35993.1| outer membrane adhesin like proteiin [Leptothrix cholodnii SP-6]
          Length = 4231

 Score = 42.8 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 47/135 (34%), Gaps = 15/135 (11%)

Query: 97   ALRSVVDLSALGS----------RQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMED 146
             L++   L  L +             +ID     AD  T  A+  G   AL D    +  
Sbjct: 1581 TLQAATLLRFLPAADYNGPAPTLTTRLIDSSTTVADAATLDASTHGGSTALSDATVALNS 1640

Query: 147  CSNKFQLSQVLKGHVAA-ISCGMLCGYPIVDLDY--GEDSTIDVDANFVMTDSGHIVEVQ 203
                   + +L G +AA ++ G        DL Y   +D   D+        +G I EV 
Sbjct: 1641 SVTAVNDAPLLTGDLAASVAVGNRYTITSGDLGYTDPDDGNADITFTVSALGNGSI-EVD 1699

Query: 204  GSAERATFSQDHFFA 218
            G++    F+     A
Sbjct: 1700 GTS-ATQFTGTQLAA 1713


>gi|6321597|ref|NP_011674.1| Mtr3p [Saccharomyces cerevisiae S288c]
 gi|1351826|sp|P48240|MTR3_YEAST RecName: Full=Exosome complex component MTR3; AltName: Full=mRNA
           transport regulator 3
 gi|1045263|emb|CAA59815.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|1246048|gb|AAB35850.1| Mtr3p [Saccharomyces cerevisiae]
 gi|1323269|emb|CAA97172.1| MTR3 [Saccharomyces cerevisiae]
 gi|285812349|tpg|DAA08249.1| TPA: Mtr3p [Saccharomyces cerevisiae S288c]
          Length = 250

 Score = 42.8 bits (100), Expect = 0.045,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 53/187 (28%), Gaps = 44/187 (23%)

Query: 13  EISLTRRVSKYAEGSCLVK---FGD-THLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
           E+SL     +   GS LV+    G  T L+T        P  IR +     T    +   
Sbjct: 45  ELSLHTGFIENCNGSALVEARSLGHQTSLITAVYG----PRSIRGSFTSQGTISIQLKNG 100

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI--------- 119
                   E           E+   +     SVV+LS      I I   +          
Sbjct: 101 LLEKYNTNELK---------EVSSFLMGIFNSVVNLSRYPKSGIDIFVYLTYDKDLTNNP 151

Query: 120 -QADGGTRTA----------AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
              D  ++             IT   +AL D    + D +   + +         +   +
Sbjct: 152 QDDDSQSKMMSSQISSLIPHCITSITLALADAGIELVDMAGAGEAN-------GTVVSFI 204

Query: 169 LCGYPIV 175
             G  IV
Sbjct: 205 KNGEEIV 211


>gi|123419905|ref|XP_001305647.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121887178|gb|EAX92717.1| hypothetical protein TVAG_220800 [Trichomonas vaginalis G3]
          Length = 262

 Score = 42.4 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 2  RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT---ATLEEKVPMW 50
          R  GR  N  R I +T +  K  + S L+  G T ++ T   AT +   P +
Sbjct: 20 RNDGRSFNDSRPIRITEKCFKDGQSSSLISLGKT-IIATKIVATPQPIAPSF 70


>gi|50286799|ref|XP_445829.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525135|emb|CAG58748.1| unnamed protein product [Candida glabrata]
          Length = 248

 Score = 42.4 bits (99), Expect = 0.049,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 20/113 (17%)

Query: 13  EISLTRRVSKYAEGSCLVKFGDTHL-------LTTATLEEKVPMWIRNTKHGWITAEYGM 65
           +I+L         GS LV+  DT +       +T+       P  +R +     +    +
Sbjct: 40  KIALHTGFIANCNGSALVEIKDTKITHHQTSLITSVYG----PKSVRGSFTSQASLSIQL 95

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
                     RE           E+   +     SV++L       I I   +
Sbjct: 96  KNGLLEKYESRELK---------EVANFLTSIFNSVINLKRYPKSGIDIFIYI 139


>gi|294945801|ref|XP_002784833.1| Exosome complex exonuclease RRP42, putative [Perkinsus marinus
          ATCC 50983]
 gi|239898075|gb|EER16629.1| Exosome complex exonuclease RRP42, putative [Perkinsus marinus
          ATCC 50983]
          Length = 289

 Score = 42.4 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT 40
          +R  GR  +  R IS+T      A  S  +   +TH++  
Sbjct: 28 VRSDGRNCHDRRPISITTNTISAANASATLDCDNTHIIVG 67


>gi|317033489|ref|XP_001395918.2| 3' exoribonuclease family protein [Aspergillus niger CBS 513.88]
          Length = 403

 Score = 42.4 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
          +R +GR  +Q R  S       +  GS +V+ G T  +   
Sbjct: 43 IRANGRAPSQFRVTSANTGSLTHTNGSAVVRVGGTTAVCGV 83


>gi|294868324|ref|XP_002765481.1| exosome complex exonuclease rrp45, putative [Perkinsus marinus ATCC
           50983]
 gi|239865524|gb|EEQ98198.1| exosome complex exonuclease rrp45, putative [Perkinsus marinus ATCC
           50983]
          Length = 349

 Score = 42.4 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 67/228 (29%), Gaps = 46/228 (20%)

Query: 24  AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSG-- 81
           A G      G T +    T +   P   R  + G ++      P +    +     SG  
Sbjct: 8   ALGQAECSIGKTRIRAVVTGQLTSPPSNR-PREGRLSINVEAGPMAAPAVLPSGNSSGLV 66

Query: 82  --RQGGRSQEIQRMIGRALRS--VVDLSALGSR------QIIIDCDVIQADGGTRTAAIT 131
              Q      +   + R L+    VD+ AL  +      ++ +D  V+  +G    AA  
Sbjct: 67  GSAQTPEGISLCNQLERMLKGSNAVDVEALCIQSGSLVWELRLDVHVLSDNGNVGDAAAI 126

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
            + VAL                      H       ++ G  I   D             
Sbjct: 127 ASIVALR---------------------HYRRAEVSVVNGEIIYKPD------------V 153

Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           VM   G +     S   +          + LA  R+ ++  L  + ++
Sbjct: 154 VMNQYGELCGALKSGGTSLMLHRDLIPAICLATARVKEVTALINEKLA 201


>gi|115922537|ref|XP_001179844.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 229

 Score = 42.4 bits (99), Expect = 0.056,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 15/145 (10%)

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL------------- 157
            +  D  V++  G    A       AL++    +         ++ +             
Sbjct: 75  TLYADIVVLECGGNLLDAIALAVKAALYNTRIPLVTVHKDMDGTEDIDVSSNPHDFVTLD 134

Query: 158 -KGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
            K     ++  M+    IVD    E++         +   G I  +       + + D  
Sbjct: 135 TKNLPVLVTVTMVGSGHIVDATLEEEACSMACIVAAVNKEGAIDGMVKKG-SGSLTIDSI 193

Query: 217 FAMLNLAKDRIADLIKLQKDVISNE 241
           + ML  AK    DL K  +D +S +
Sbjct: 194 YKMLTSAKQIGKDLNKSLEDFLSKK 218



 Score = 38.1 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 15/38 (39%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL 38
          +R  GR     R   L   V     GS  +K  +T +L
Sbjct: 23 LRSDGRTCLSYRNFELECGVVSNTSGSARLKLSNTQML 60


>gi|115947457|ref|XP_794197.2| PREDICTED: similar to Exosc7 protein, partial [Strongylocentrotus
           purpuratus]
          Length = 209

 Score = 42.4 bits (99), Expect = 0.057,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 15/145 (10%)

Query: 111 QIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL------------- 157
            +  D  V++  G    A       AL++    +         ++ +             
Sbjct: 55  TLYADIVVLECGGNLLDAIALAVKAALYNTRIPLVTVHKDMDGTEDIDVSSNPHDFVTLD 114

Query: 158 -KGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
            K     ++  M+    IVD    E++         +   G I  +       + + D  
Sbjct: 115 TKNLPVLVTVTMVGSGHIVDATLEEEACSMACIVAAVNKEGAIDGMVKKG-SGSLTIDSI 173

Query: 217 FAMLNLAKDRIADLIKLQKDVISNE 241
           + ML  AK    DL K  +D +S +
Sbjct: 174 YKMLTSAKQIGKDLNKSLEDFLSKK 198



 Score = 38.1 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 15/38 (39%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL 38
          +R  GR     R   L   V     GS  +K  +T +L
Sbjct: 3  LRSDGRTCLSYRNFELECGVVSNTSGSARLKLSNTQML 40


>gi|224002617|ref|XP_002290980.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972756|gb|EED91087.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 222

 Score = 42.0 bits (98), Expect = 0.063,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 34/201 (16%)

Query: 1   MRLSGRQENQMREISLTRR----------VSKYAEGSCLVKFGD---------THLLTTA 41
           +R+ GR   + R   +T R          V+     S ++  G          T +L + 
Sbjct: 19  LRIDGRNHTEHRPYVITNRSSRTRSSAVLVANRPPPSLILSNGSSRIHLPGSTTDVLCSV 78

Query: 42  TLEEKVPMWIR-NTKHGWITAEYGMLPRSTGNRVKREAV-----SGRQGGRSQE--IQRM 93
             +   P   + N     +  +  +   S    +   +        ++  R +E  I  +
Sbjct: 79  KADLVHPSSSKPNEGVVELNVDLSLCGGSVSGFMGGGSHSSSAGKRKRLQREEESQISSL 138

Query: 94  IGR-ALRSVVDLSAL---GSRQII---IDCDVIQADGGTRTAAITGAWVALHDCLQHMED 146
           + R  L   V+   L     + +    ID  V++ DG    AA  G   AL + +  +  
Sbjct: 139 LQRLVLPHAVNYEKLVVWPGKYVWRLSIDVCVLRCDGCVLDAASMGVREALQNTMLPVVQ 198

Query: 147 CSNKFQLSQVLKGHVAAISCG 167
                +        V   +  
Sbjct: 199 AVMGMEGGGGNNTEVEMEAVP 219


>gi|71656277|ref|XP_816688.1| exosome-associated protein 1 [Trypanosoma cruzi strain CL Brener]
 gi|70881833|gb|EAN94837.1| exosome-associated protein 1, putative [Trypanosoma cruzi]
          Length = 383

 Score = 42.0 bits (98), Expect = 0.063,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 8/51 (15%)

Query: 1  MRLSGRQENQMREISLTRRVSKYA-------EGSCL-VKFGDTHLLTTATL 43
          +R  GR   Q R  ++    S  A       +GSC+ V+ G T ++  AT 
Sbjct: 23 VRGDGRTLTQRRPFTIRTNYSAGASIVDVEYDGSCVEVQCGATTVVAAATP 73


>gi|121715958|ref|XP_001275588.1| 3' exoribonuclease family protein (Rrp42), putative [Aspergillus
          clavatus NRRL 1]
 gi|119403745|gb|EAW14162.1| 3' exoribonuclease family protein (Rrp42), putative [Aspergillus
          clavatus NRRL 1]
          Length = 391

 Score = 42.0 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLEEK 46
          +R  GR   Q R +S    +     GS  V F D T  +     E +
Sbjct: 35 IRPDGRSSTQFRPLSAETDILPGTNGSARVGFADGTQAIVGVKAEVE 81


>gi|67903390|ref|XP_681951.1| hypothetical protein AN8682.2 [Aspergillus nidulans FGSC A4]
 gi|40740914|gb|EAA60104.1| hypothetical protein AN8682.2 [Aspergillus nidulans FGSC A4]
          Length = 413

 Score = 42.0 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
          +R +GR   Q R  S       +  GS +V+ GDT  +     E
Sbjct: 47 IRANGRSPQQFRVTSANTGSLTHTNGSAVVRVGDTTAVCGIKAE 90


>gi|85014283|ref|XP_955637.1| ribonuclease [Encephalitozoon cuniculi GB-M1]
 gi|19171331|emb|CAD27056.1| RIBONUCLEASE PH-LIKE PROTEIN [Encephalitozoon cuniculi GB-M1]
          Length = 209

 Score = 42.0 bits (98), Expect = 0.073,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 22/147 (14%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R  GR+ N++R I  T+R     +G   ++ G+T +    +   ++         G ++
Sbjct: 8   FREDGRRPNELRRIEATKRRIGE-KGRVDMRQGNTQVSVICSGPREI---------GKLS 57

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
                   S     ++E VS +   R+ E + ++      V     L    + I   V +
Sbjct: 58  VGVEFYAVS-----RQEPVSEK---RASEYEGLLLDIFGDV----LLPEASVDIQVIVRE 105

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDC 147
             G   +  I    + L      + D 
Sbjct: 106 DGGSLLSTMINCTTLCLSYFGMPLVDM 132


>gi|218709385|ref|YP_002417006.1| putative hemolysin-type calcium-binding region [Vibrio splendidus
           LGP32]
 gi|218322404|emb|CAV18557.1| putative hemolysin-type calcium-binding region [Vibrio splendidus
           LGP32]
          Length = 1883

 Score = 42.0 bits (98), Expect = 0.073,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 62/198 (31%), Gaps = 29/198 (14%)

Query: 20  VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79
           V+  A+GS  VK G+T L+     ++             +T   G++   TG    ++  
Sbjct: 355 VTPNADGSYTVKAGETKLVVEVATKDDGTYEGDEKLSLKVTGAAGVIGTGTGELTIKDDG 414

Query: 80  SGR-------QGGR---SQEIQRMIGRALRSVVDLSALGSRQIIIDCD------------ 117
            G           R   S E  ++I     +  D+S   +  + +               
Sbjct: 415 KGPVDPTNPNPDDRPSVSIEDSKVINEGSTASFDVSLSKAASVDVSVTLETLYGTATADD 474

Query: 118 -----VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV--LKGHVAAISCGMLC 170
                V  A G   T    G++       + + + + K   +     K  +       + 
Sbjct: 475 ISSIVVKDAQGNVVTPNADGSYTVKAGETKLVVEVATKDDGTYEGDEKLSLKVTGVTGVN 534

Query: 171 GYPIVDLDYGEDSTIDVD 188
           G    DL   +D T  VD
Sbjct: 535 GTDTSDLTITDDGTGPVD 552


>gi|253743571|gb|EES99934.1| Hypothetical protein GL50581_2832 [Giardia intestinalis ATCC 50581]
          Length = 227

 Score = 42.0 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 78/234 (33%), Gaps = 32/234 (13%)

Query: 1   MRLSGRQENQMREI-SLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWI 59
           +R+ GR  N  R +      V    + S   + G+  +L            +       +
Sbjct: 18  VRIDGRDTNTFRSVLREQSGVLCGVDASSSCQIGEAQVLC-------FTRTLDLQGQEEL 70

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMI-GRALRSVVDLSALGSRQIIIDCDV 118
             E      +   +++    S     R+    R+   +++ S++  + +  R +++   +
Sbjct: 71  PDEAETEGEAAHTKIQYLPTSLAPHNRT----RLAYCQSVASMLSRNTVVPRSVVLYLSL 126

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           + A G +     T A +A+ DCL+ +++                 +    + G  I D  
Sbjct: 127 L-AYGPSYC---TAASIAVADCLKQLDNTL----------VSPILVGAWKIGGRWICDAS 172

Query: 179 YGEDSTIDVDANFVMTDSGHIVEVQGSAERA--TFSQDHFFAMLNLAKDRIADL 230
             E+ + +     ++  +G    VQ  ++      +       L   +     L
Sbjct: 173 LAEEESAEASVLALLDRAG---LVQDVSKHGSRPITIADLDTALETCRIAARAL 223


>gi|323334326|gb|EGA75707.1| Rrp42p [Saccharomyces cerevisiae AWRI796]
          Length = 265

 Score = 41.6 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLV 30
          +R  GR  +Q R I +       + GS  +
Sbjct: 21 IRPDGRLPHQFRPIEIFTDFLPSSNGSSRI 50


>gi|323305688|gb|EGA59428.1| Rrp42p [Saccharomyces cerevisiae FostersB]
          Length = 106

 Score = 41.6 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLV 30
          +R  GR  +Q R I +       + GS  +
Sbjct: 21 IRPDGRLPHQFRPIEIFTDFLPSSNGSSRI 50


>gi|190406826|gb|EDV10093.1| exosome complex exonuclease MTR3 [Saccharomyces cerevisiae RM11-1a]
 gi|256272031|gb|EEU07044.1| Mtr3p [Saccharomyces cerevisiae JAY291]
          Length = 250

 Score = 41.6 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 53/187 (28%), Gaps = 44/187 (23%)

Query: 13  EISLTRRVSKYAEGSCLVK---FGD-THLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
           E+SL     +   GS LV+    G  T L++        P  IR +     T    +   
Sbjct: 45  ELSLHTGFIENCNGSALVEARSLGHQTSLISAVYG----PRSIRGSFTSQGTISIQLKNG 100

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI--------- 119
                   E           E+   +     SVV+LS      I I   +          
Sbjct: 101 LLEKYNTNELK---------EVSSFLMGIFNSVVNLSRYPKSGIDIFVYLTYDKDLTNNP 151

Query: 120 -QADGGTRTA----------AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
              D  ++             IT   +AL D    + D +   + +         +   +
Sbjct: 152 QDDDSQSKMTSSQISSLIPHCITSITLALADAGIELVDMAGAGEAN-------GTVVSFI 204

Query: 169 LCGYPIV 175
             G  IV
Sbjct: 205 KNGEEIV 211


>gi|151943435|gb|EDN61746.1| 3'-5'-exoribonuclease [Saccharomyces cerevisiae YJM789]
 gi|207345057|gb|EDZ72002.1| YGR158Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259146661|emb|CAY79918.1| Mtr3p [Saccharomyces cerevisiae EC1118]
 gi|323304890|gb|EGA58648.1| Mtr3p [Saccharomyces cerevisiae FostersB]
 gi|323309013|gb|EGA62243.1| Mtr3p [Saccharomyces cerevisiae FostersO]
 gi|323333562|gb|EGA74956.1| Mtr3p [Saccharomyces cerevisiae AWRI796]
 gi|323337512|gb|EGA78759.1| Mtr3p [Saccharomyces cerevisiae Vin13]
 gi|323354843|gb|EGA86676.1| Mtr3p [Saccharomyces cerevisiae VL3]
          Length = 250

 Score = 41.6 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 53/187 (28%), Gaps = 44/187 (23%)

Query: 13  EISLTRRVSKYAEGSCLVK---FGD-THLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
           E+SL     +   GS LV+    G  T L++        P  IR +     T    +   
Sbjct: 45  ELSLHTGFIENCNGSALVEARSLGHQTSLISAVYG----PRSIRGSFTSQGTISIQLKNG 100

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI--------- 119
                   E           E+   +     SVV+LS      I I   +          
Sbjct: 101 LLEKYNTNELK---------EVSSFLMGIFNSVVNLSRYPKSGIDIFVYLTYDKDLTNNP 151

Query: 120 -QADGGTRTA----------AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
              D  ++             IT   +AL D    + D +   + +         +   +
Sbjct: 152 QDDDSQSKMTSSQISSLIPHCITSITLALADAGIELVDMAGAGEAN-------GTVVSFI 204

Query: 169 LCGYPIV 175
             G  IV
Sbjct: 205 KNGEEIV 211


>gi|151941892|gb|EDN60248.1| exosome 3'-5'-exoribonuclease complex component [Saccharomyces
          cerevisiae YJM789]
 gi|190405114|gb|EDV08381.1| exosome 3->5 exoribonuclease complex component with Rrp4p
          [Saccharomyces cerevisiae RM11-1a]
 gi|207347024|gb|EDZ73342.1| YDL111Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256274098|gb|EEU09009.1| Rrp42p [Saccharomyces cerevisiae JAY291]
 gi|259145134|emb|CAY78398.1| Rrp42p [Saccharomyces cerevisiae EC1118]
 gi|323338437|gb|EGA79662.1| Rrp42p [Saccharomyces cerevisiae Vin13]
 gi|323349440|gb|EGA83664.1| Rrp42p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323355827|gb|EGA87640.1| Rrp42p [Saccharomyces cerevisiae VL3]
          Length = 265

 Score = 41.6 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLV 30
          +R  GR  +Q R I +       + GS  +
Sbjct: 21 IRPDGRLPHQFRPIEIFTDFLPSSNGSSRI 50


>gi|6320092|ref|NP_010172.1| Rrp42p [Saccharomyces cerevisiae S288c]
 gi|2498862|sp|Q12277|RRP42_YEAST RecName: Full=Exosome complex component RRP42; AltName:
          Full=Ribosomal RNA-processing protein 42
 gi|1199537|emb|CAA64901.1| ORF 2315 [Saccharomyces cerevisiae]
 gi|1431160|emb|CAA98678.1| RRP42 [Saccharomyces cerevisiae]
 gi|285810925|tpg|DAA11749.1| TPA: Rrp42p [Saccharomyces cerevisiae S288c]
          Length = 265

 Score = 41.6 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLV 30
          +R  GR  +Q R I +       + GS  +
Sbjct: 21 IRPDGRLPHQFRPIEIFTDFLPSSNGSSRI 50


>gi|145521242|ref|XP_001446476.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413954|emb|CAK79079.1| unnamed protein product [Paramecium tetraurelia]
          Length = 984

 Score = 41.6 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 23/135 (17%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R+ GR   Q+R   +         G+  +  G+T      ++    P  IR    G++  
Sbjct: 785 RIDGRDPLQLR--MIQSHFGPQITGAVELSLGET------SVSRMSPNPIR-PSEGFLKF 835

Query: 62  EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGS------RQII 113
              +        +       +      EI++ I + ++    +D  +L          I 
Sbjct: 836 HLDLQVLRDTGYMHNPI---KLD---MEIEKYIEKVIKGSKALDTESLCILSGKNVWSID 889

Query: 114 IDCDVIQADGGTRTA 128
           ++  +I  DG    A
Sbjct: 890 VNVALINNDGNLLDA 904


>gi|326482450|gb|EGE06460.1| 3' exoribonuclease [Trichophyton equinum CBS 127.97]
          Length = 415

 Score = 41.6 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 4  SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
          +GR + Q R  S++     +  GS +V+ GDT  +   
Sbjct: 55 NGRTDTQFRPASVSTGSLTHTNGSAVVRIGDTAAVCGV 92


>gi|323348432|gb|EGA82677.1| Mtr3p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 240

 Score = 41.6 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 46/161 (28%), Gaps = 37/161 (22%)

Query: 13  EISLTRRVSKYAEGSCLVK---FGD-THLLTTATLEEKVPMWIRNTKHGWITAEYGMLPR 68
           E+SL     +   GS LV+    G  T L++        P  IR +     T    +   
Sbjct: 45  ELSLHTGFIENCNGSALVEARSLGHQTSLISAVYG----PRSIRGSFTSQGTISIQLKNG 100

Query: 69  STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI--------- 119
                   E           E+   +     SVV+LS      I I   +          
Sbjct: 101 LLEKYNTNELK---------EVSSFLMGIFNSVVNLSRYPKSGIDIFVYLTYDKDLTNNP 151

Query: 120 -QADGGTRTA----------AITGAWVALHDCLQHMEDCSN 149
              D  ++             IT   +AL D    + D + 
Sbjct: 152 QDDDSQSKMTSSQISSLIPHCITSITLALADAGIELVDMAG 192


>gi|19113551|ref|NP_596759.1| exosome subunit Rrp42 (predicted) [Schizosaccharomyces pombe
          972h-]
 gi|21759395|sp|O60124|RRP42_SCHPO RecName: Full=Exosome complex component rrp42; AltName:
          Full=Ribosomal RNA-processing protein 42
 gi|3133104|emb|CAA19030.1| exosome subunit Rrp42 (predicted) [Schizosaccharomyces pombe]
          Length = 299

 Score = 41.6 bits (97), Expect = 0.089,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKF 32
          +R  GR  +Q+R +S    V     GS  VK+
Sbjct: 22 IRNDGRSIDQLRPLSGQVDVLPGTNGSARVKW 53


>gi|71033555|ref|XP_766419.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68353376|gb|EAN34136.1| hypothetical protein TP01_0898 [Theileria parva]
          Length = 88

 Score = 41.6 bits (97), Expect = 0.093,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT-----ATLEEKVP 48
          +RL GR+ ++   +++   +S  A GS  V FGD  + TT      + E+  P
Sbjct: 12 LRLDGRKLDEQYSLNIIPNISSIAHGSSQVTFGDNIVQTTVNFSIVSPEDSAP 64


>gi|118388111|ref|XP_001027156.1| 3' exoribonuclease family, domain 1 containing protein
          [Tetrahymena thermophila]
 gi|89308926|gb|EAS06914.1| 3' exoribonuclease family, domain 1 containing protein
          [Tetrahymena thermophila SB210]
          Length = 270

 Score = 41.6 bits (97), Expect = 0.100,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 2/73 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
          +R  GR+ +Q RE  +     K A GS  +   D  +        KV +   +   G I 
Sbjct: 21 IRGDGRKNDQSREYLIQTGQLKQANGSSFISLNDNSV--NIYTGIKVEIGETDNDEGKII 78

Query: 61 AEYGMLPRSTGNR 73
           +     R+  NR
Sbjct: 79 LKIESAQRTEQNR 91


>gi|119600486|gb|EAW80080.1| hCG1654866, isoform CRA_a [Homo sapiens]
          Length = 432

 Score = 41.6 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 18/112 (16%)

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           R A +G  GG   E   ++  AL   + L      Q+     +++  G      +  A +
Sbjct: 52  RHAPTG--GGEEPEPAMVLQEALEPAMCLDRYPHVQLEASELLLEDGGSALATELNTAKL 109

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---YPIVDLDYGEDST 184
           AL      M D              V +   G+  G     ++D    E+  
Sbjct: 110 ALAYAGMEMNDL-------------VVSCGLGLAPGSVPTWLLDPMRLEEEH 148


>gi|322496128|emb|CBZ31199.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 324

 Score = 41.6 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 56/175 (32%), Gaps = 13/175 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   ++R   +        +GS     G T ++ +       P   +N ++     
Sbjct: 7   RRDGRTALELRGKEMRLSDMTAFDGSSWYAQGQTAVMASIHG----PTVAKNDEYDTCIV 62

Query: 62  EYG------MLPRSTG-NRVKREAVSGRQGGRSQEIQR--MIGRALRSVVDLSALGSRQI 112
           +        + P + G  +V  E        R+  +    ++   L +V          +
Sbjct: 63  QVRVQHAGVLAPAAGGAEKVLYEERKLEVLTRTDALALGSLLESTLNAVFIRERFPRCVL 122

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG 167
           ++D  V++ DG     A+     AL D             ++ V     A  + G
Sbjct: 123 VVDVVVVRDDGSLPAVALNAVMSALLDAGLPCRTTMAAVCVAVVTHDGGADSTSG 177


>gi|159122645|gb|EDP47766.1| 3' exoribonuclease family protein [Aspergillus fumigatus A1163]
          Length = 411

 Score = 41.6 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
          +R +GR  +Q R  S       +  GS +V+ GDT  +   
Sbjct: 48 IRANGRATSQFRVTSANTGSLTHTNGSAVVRIGDTAAVCGV 88


>gi|146075517|ref|XP_001462721.1| ribosomal RNA processing protein [Leishmania infantum JPCM5]
 gi|134066800|emb|CAM65260.1| putative ribosomal RNA processing protein [Leishmania infantum
           JPCM5]
          Length = 324

 Score = 41.6 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 56/175 (32%), Gaps = 13/175 (7%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
           R  GR   ++R   +        +GS     G T ++ +       P   +N ++     
Sbjct: 7   RRDGRTALELRGKEMRLSDMTAFDGSSWYAQGQTAVMASIHG----PTVAKNDEYDTCIV 62

Query: 62  EYG------MLPRSTG-NRVKREAVSGRQGGRSQEIQR--MIGRALRSVVDLSALGSRQI 112
           +        + P + G  +V  E        R+  +    ++   L +V          +
Sbjct: 63  QVRVQHAGVLAPAAGGAEKVLYEERKLEVLTRTDALALGSLLESTLNAVFIRERFPRCVL 122

Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG 167
           ++D  V++ DG     A+     AL D             ++ V     A  + G
Sbjct: 123 VVDVVVVRDDGSLPAVALNAVMSALLDAGLPCRTTMAAVCVAVVTHDGGADSTSG 177


>gi|70984709|ref|XP_747861.1| 3' exoribonuclease family protein [Aspergillus fumigatus Af293]
 gi|66845488|gb|EAL85823.1| 3' exoribonuclease family protein [Aspergillus fumigatus Af293]
          Length = 411

 Score = 41.6 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
          +R +GR  +Q R  S       +  GS +V+ GDT  +   
Sbjct: 48 IRANGRATSQFRVTSANTGSLTHTNGSAVVRIGDTAAVCGV 88


>gi|148692299|gb|EDL24246.1| exosome component 5, isoform CRA_a [Mus musculus]
          Length = 128

 Score = 41.2 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%)

Query: 11 MREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV 47
          +R  +  + +    +GS     GDT +L       +V
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEV 64


>gi|119467182|ref|XP_001257397.1| 3' exoribonuclease family protein [Neosartorya fischeri NRRL 181]
 gi|119405549|gb|EAW15500.1| 3' exoribonuclease family protein [Neosartorya fischeri NRRL 181]
          Length = 411

 Score = 41.2 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
          +R +GR  +Q R  S       +  GS +V+ GDT  +   
Sbjct: 48 IRANGRATSQFRVTSANTGSLTHTNGSAVVRIGDTAAVCGV 88


>gi|302306331|ref|NP_982576.2| AAR035Cp [Ashbya gossypii ATCC 10895]
 gi|299788466|gb|AAS50400.2| AAR035Cp [Ashbya gossypii ATCC 10895]
          Length = 214

 Score = 41.2 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 65/231 (28%), Gaps = 29/231 (12%)

Query: 16  LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           ++  +  + +GS          +   +   +        +H  +              + 
Sbjct: 1   MSLGILSHVDGSSKFSTAAASAICGVSGPIEPKARQEIPQHLALDV------------IV 48

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           R A  G    R + ++  +   +  VV+      +   I   V+++          G   
Sbjct: 49  RPAA-GPPTTREKLLEDKVRATITPVVETFLHPRQLCQITLQVLKS---------VGQHE 98

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM-LCGYPIVDLDYGEDSTIDVDANF--- 191
            +   +               L+  ++A+S  +   G    +    E             
Sbjct: 99  HMELAVALNAAYLALLDAGVPLRAVLSAVSIAVSTEGELTQNPSPAELQDARSVFTAAFS 158

Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
           V      ++ + G+    TF +     +L LA+     L    +  +  ++
Sbjct: 159 VADGVNTLLLLDGNG---TFEESTVSKVLELAEKECVRLAGELRHAVKEKL 206


>gi|303390958|ref|XP_003073709.1| exosome RNAse PH-like protein [Encephalitozoon intestinalis ATCC
           50506]
 gi|303302857|gb|ADM12349.1| exosome RNAse PH-like protein [Encephalitozoon intestinalis ATCC
           50506]
          Length = 188

 Score = 41.2 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 16/133 (12%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
           I     V  +  GS    + +T +               + +   +  ++          
Sbjct: 4   IRSMMSVIPHCTGSSRFTYNNTTVFCIVHGPSDSISRQEDPEMAILDVKW---------- 53

Query: 74  VKREAVSGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
             R+ +     GR  +    R I + L   + L     R I I  +V+     T   A+ 
Sbjct: 54  --RDIIL--INGRIYDKYFSREIEKILSKRIILELDPCRSIQISFNVVGEVRNTLFCAVN 109

Query: 132 GAWVALHDCLQHM 144
            A +AL D    +
Sbjct: 110 AALLALSDAGIPL 122


>gi|255716660|ref|XP_002554611.1| KLTH0F09372p [Lachancea thermotolerans]
 gi|238935994|emb|CAR24174.1| KLTH0F09372p [Lachancea thermotolerans]
          Length = 263

 Score = 41.2 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 2  RLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTAT 42
          R  GR+ +Q R I +       + GS  V   D T  L +  
Sbjct: 22 RPDGRKADQFRPIEVFTDFLPASNGSSKVVASDGTECLVSVK 63


>gi|71746002|ref|XP_822231.1| ribosomal RNA processing protein [Leishmania major strain Friedlin]
 gi|321438170|emb|CBZ11922.1| putative ribosomal RNA processing protein [Leishmania major strain
           Friedlin]
          Length = 324

 Score = 41.2 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 13/152 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R  GR   ++R   +        +GS     G T ++ +       P   +N ++    
Sbjct: 6   VRRDGRTALELRGKEMKLSDMTTFDGSSWYAQGQTAVMVSIHG----PTIAKNDEYDTCI 61

Query: 61  AEYG------MLPRSTG-NRVKREAVSGRQGGRSQEIQR--MIGRALRSVVDLSALGSRQ 111
            +        + P + G  +   E        R+  +    ++   L +V          
Sbjct: 62  VQVRIQHAGVLAPAAGGAEKALYEERKLELLTRTDALALGSLLESTLNAVFLRERFPRCV 121

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQH 143
           +++D  V++ DG     A+     AL D    
Sbjct: 122 LVVDVIVVRDDGSLPAVALNAVMSALLDAGLP 153


>gi|306836335|ref|ZP_07469315.1| polyribonucleotide nucleotidyltransferase [Corynebacterium accolens
           ATCC 49726]
 gi|304567806|gb|EFM43391.1| polyribonucleotide nucleotidyltransferase [Corynebacterium accolens
           ATCC 49726]
          Length = 255

 Score = 41.2 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 9/97 (9%)

Query: 153 LSQVLKGHVAAISCGMLCGYP--------IVDLDYGEDSTIDVDANFVMTDSGHIVEVQG 204
               LK  VA I+ G++ G          + D+   ED+  D+D     T    I  +Q 
Sbjct: 10  AGVPLKAPVAGIAMGLVSGEVKGKEKFVALTDILGAEDAFGDMDFKVAGTSEF-ITALQL 68

Query: 205 SAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
             +            L  A+D  A +++   +VI + 
Sbjct: 69  DTKLDGIPSKVLAQALEQARDARATILETMAEVIDSP 105


>gi|45187578|ref|NP_983801.1| ADL295Wp [Ashbya gossypii ATCC 10895]
 gi|44982316|gb|AAS51625.1| ADL295Wp [Ashbya gossypii ATCC 10895]
          Length = 263

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 32/130 (24%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLL------TTATLEEKVPMWIRNT 54
           +R  GR   Q R + +       + GS         ++         +++ KV      +
Sbjct: 21  IRADGRAAAQFRPLDVAVDFLPNSNGSA-------RIITSDGSEALVSVKSKVVDHTVTS 73

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSAL-----GS 109
           +   +  +       TG R     VS         +  ++ R L + VD  AL      S
Sbjct: 74  ELIVVDVDI------TGQREDSPEVSS--------MASLVRRILAANVDAGALRLTKKYS 119

Query: 110 RQIIIDCDVI 119
            Q+ +D  V+
Sbjct: 120 FQLSVDVLVL 129


>gi|121704102|ref|XP_001270315.1| 3' exoribonuclease family protein [Aspergillus clavatus NRRL 1]
 gi|119398459|gb|EAW08889.1| 3' exoribonuclease family protein [Aspergillus clavatus NRRL 1]
          Length = 416

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
          +R +GR  +Q R  S       +  GS +V+ GDT  +   
Sbjct: 48 VRANGRATSQFRITSANTGSLTHTNGSAVVRIGDTAAVCGV 88


>gi|170590454|ref|XP_001899987.1| DNA segment, Chr 7, Wayne State University 180, expressed, putative
           [Brugia malayi]
 gi|158592619|gb|EDP31217.1| DNA segment, Chr 7, Wayne State University 180, expressed, putative
           [Brugia malayi]
          Length = 179

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 18/159 (11%)

Query: 87  SQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMED 146
           S +I R++G AL+  +D        + +   ++Q  G                       
Sbjct: 30  SVKINRLLGAALKHTIDHVHYPRIVLNVTLQLLQKGG-------------CEAAAALNAA 76

Query: 147 CSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA 206
           C     L  ++ G    ++  +  G+ I+D    + S+ D    F    SG   E   + 
Sbjct: 77  CLAALDLGIIMNGMFCGVTVAVSQGHLILDPVCAQCSSADTVYTFAFYSSGE--ESTKTV 134

Query: 207 ---ERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNEV 242
                 TF    F A   LAK   AD+    ++++  ++
Sbjct: 135 ACDTDGTFEYSTFEAARTLAKRASADIFIFYREILQRKL 173


>gi|308157951|gb|EFO60878.1| 3' exoribonuclease, putative [Giardia lamblia P15]
          Length = 262

 Score = 40.8 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
          +R  GR++ + RE ++       + GS   + G T L+ +  L+
Sbjct: 5  LRPDGREKLEHREPTILFNCISTSTGSVRFRLGGTDLIASVYLD 48


>gi|321447566|gb|EFX61099.1| hypothetical protein DAPPUDRAFT_340646 [Daphnia pulex]
          Length = 189

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 24  AEGSCLVKFGDTHLLTTATLEEKV 47
           A+GS  ++ G T L+       +V
Sbjct: 98  AKGSAYIEQGKTTLVCGVYGPREV 121


>gi|255950938|ref|XP_002566236.1| Pc22g23450 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593253|emb|CAP99633.1| Pc22g23450 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 387

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
          +R +GR  +Q R  S       +  GS +V+ GDT  +   
Sbjct: 46 VRANGRATSQFRVTSANAGSLTHTNGSAVVRIGDTAAVCGV 86


>gi|212533875|ref|XP_002147094.1| 3' exoribonuclease family protein (Rrp42), putative [Penicillium
          marneffei ATCC 18224]
 gi|210072458|gb|EEA26547.1| 3' exoribonuclease family protein (Rrp42), putative [Penicillium
          marneffei ATCC 18224]
          Length = 401

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLE 44
          +R  GR   Q R ++    +     GS  + F D T  +     E
Sbjct: 34 IRPDGRSPTQFRFLTAETGILPGTNGSARIGFADGTEAIVGVKAE 78


>gi|71004918|ref|XP_757125.1| hypothetical protein UM00978.1 [Ustilago maydis 521]
 gi|46096381|gb|EAK81614.1| hypothetical protein UM00978.1 [Ustilago maydis 521]
          Length = 327

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 82/299 (27%), Gaps = 67/299 (22%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHL--LTTATLEEKVPMWIRNTKHGW 58
           +R  GR     R++ ++        G+C V    T +     ATL   +P        G+
Sbjct: 25  VRPDGRSFLSTRDVDISFG---EELGNCTVAIKGTRVSTCVRATL---MPPRSDRPYEGF 78

Query: 59  ITAEYGMLPRSTGNR-VKREAVSGRQGGRSQEIQRMIGRALR--SVVDLSALGSRQ---- 111
           +     + P +           +     R     R+I +A+R    VD  AL        
Sbjct: 79  LQITTDISPMAGIEYDSTGGGANSSARAREVLFDRLIDKAVRRTEAVDREALCVVAGEQV 138

Query: 112 --IIIDCDVIQADGGTRTAAITGAWVALHDCLQH-----------MEDCSNKFQLSQVLK 158
             + +   ++   G    AA+  + ++L    +            +     +  +   + 
Sbjct: 139 WNVHLTVHLLSDTGAALDAAVLCSMLSLRHFRRPDYSIENGNQVRLYSLDERVPVPLAIH 198

Query: 159 GHVAAISCGMLCGYP--------------------------------------IVDLDYG 180
                ++  +    P                                      ++D    
Sbjct: 199 HTPLCVTFAIFNHLPSISTAASKTQPEDRADSHLIDPNAKASSPDTSTSTSVALLDPTLL 258

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           E+S        V+     I  +  S   +         ++ +   RI  L +  +  +S
Sbjct: 259 EESLAQSKLTLVLNAQREICVLDKSY-GSPIDAHLLLHLIQIGLIRIQQLTERLEHALS 316


>gi|323508000|emb|CBQ67871.1| related to exosome complex exonuclease [Sporisorium reilianum]
          Length = 379

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 16/43 (37%)

Query: 2  RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
          R  GR     R + +   V+  A GS  +  G T +      E
Sbjct: 25 RSDGRHLLAFRSLDVDTGVAAQANGSSQITLGGTEIFCGIKAE 67


>gi|294952965|ref|XP_002787536.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
           50983]
 gi|239902542|gb|EER19332.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
           50983]
          Length = 350

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 86/267 (32%), Gaps = 30/267 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE-KVPMWIRNTKHGWI 59
           +R  GR     R + L       A G C  + G T +    T E    P    N    ++
Sbjct: 29  LRADGRTLLDCRRMKLRLGP---ALGQCECRVGSTWVRAVVTGEVITPPPERPNEGKLFV 85

Query: 60  TAEYG-MLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALR--SVVDLSALGSR----- 110
           + +YG ++  +T        + G  Q   +  +   + R L+    VD+ AL        
Sbjct: 86  SVDYGAVVSSATLPSGDSAGLPGTAQTPEAVSLCNQLERMLKGSKAVDVEALCIAGGSRV 145

Query: 111 -QIIIDCDVIQADGGTRTAAITGAWVALHD----CLQHMEDCSNKFQLSQVLKGHVAAIS 165
             + +D  V    G    AA T +  AL       +  ME  +   +  + +   +  + 
Sbjct: 146 WSVRLDVHVFTDAGNVGDAAATASVAALMHYRRSEVTTMEGSTVVREELEPMPLSIHHMP 205

Query: 166 CGML-------CGY---PIVDLDYGEDS-TIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
             +         G     + D    E+  +       V+   G +  +       +    
Sbjct: 206 LPLTFTLVKSPDGTTSAVLADPTSLEERLSGGALLVVVVNQYGELCSLLKPG-GTSCPLP 264

Query: 215 HFFAMLNLAKDRIADLIKLQKDVISNE 241
                ++ A  R  ++ K+  D +  +
Sbjct: 265 TVINCIHAAAGRAKEVHKMIADALEKD 291


>gi|294948902|ref|XP_002785952.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
           50983]
 gi|239900060|gb|EER17748.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
           50983]
          Length = 350

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 87/267 (32%), Gaps = 30/267 (11%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR-NTKHGWI 59
           +R  GR     R + L       A G C  + G T +    T E   P   R N    ++
Sbjct: 29  LRADGRTLLDCRRMKLRLGP---ALGQCECRIGSTWVRAVVTGEVITPPPERPNEGKLFV 85

Query: 60  TAEYG-MLPRSTGNRVKREAVSGR-QGGRSQEIQRMIGRALR--SVVDLSALGSR----- 110
           + +YG ++  +T        + G  Q   +  +   + R L+    VD+ AL        
Sbjct: 86  SVDYGAVVSSATLPSGDSAGLPGTAQTPEAVSLCNQLERMLKGSKAVDVEALCIAGGSRV 145

Query: 111 -QIIIDCDVIQADGGTRTAAITGAWVALHD----CLQHMEDCSNKFQLSQVLKGHVAAIS 165
             + +D  V    G    AA T +  AL       +  ME  +   +  + +   +  + 
Sbjct: 146 WSVRLDVHVFTDAGNVGDAAATASVAALMHYRRSEVTTMEGSTVVREELEPMPLSIHHMP 205

Query: 166 CGML-------CGY---PIVDLDYGEDS-TIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
             +         G     + D    E+  +       V+   G +  +       +    
Sbjct: 206 LPLTFTLVKSPDGTTSAVLADPTSLEERLSGGALLVVVVNQYGELCSLLKPG-GTSCPLP 264

Query: 215 HFFAMLNLAKDRIADLIKLQKDVISNE 241
                ++ A  R  ++ K+  D +  +
Sbjct: 265 TVINCIHAAAGRAKEVHKMIADALEKD 291


>gi|1945337|emb|CAA97223.1| unnamed protein product [Saccharomyces cerevisiae]
          Length = 109

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 16/112 (14%)

Query: 130 ITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDA 189
           I G  +AL D    M D             +++ IS G+    P++D +  E++ +    
Sbjct: 3   INGITLALIDAGISMFD-------------YISGISVGLYDTTPLLDTNSLEENAMSTVT 49

Query: 190 NFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
             V+  S  +  +           D    +L +       +  L  + +   
Sbjct: 50  LGVVGKSEKLSLL---LVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKH 98


>gi|51105818|gb|EAL24418.1| similar to Mtr3 (mRNA transport regulator 3)-homolog; Mtr3 (mRNA
           transport regulator 3)-homolog (yeast) [Homo sapiens]
          Length = 174

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 18/112 (16%)

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWV 135
           R A +G  GG   E   ++  AL   + L      Q+     +++  G      +  A +
Sbjct: 52  RHAPTG--GGEEPEPAMVLQEALEPAMCLDRYPHVQLEASELLLEDGGSALATELNTAKL 109

Query: 136 ALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCG---YPIVDLDYGEDST 184
           AL      M D              V +   G+  G     ++D    E+  
Sbjct: 110 ALAYAGMEMNDL-------------VVSCGLGLAPGSVPTWLLDPMRLEEEH 148


>gi|254585487|ref|XP_002498311.1| ZYRO0G07282p [Zygosaccharomyces rouxii]
 gi|238941205|emb|CAR29378.1| ZYRO0G07282p [Zygosaccharomyces rouxii]
          Length = 242

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 48/154 (31%), Gaps = 32/154 (20%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLL-------TTATLEEKVPMWIRNTKHGWITAEYGML 66
           IS+   + +   GS LV+  DT +L       T+       P  +R +     +    + 
Sbjct: 40  ISMHTGLIENCNGSSLVEVKDTSVLLHQSSLITSVYG----PRALRGSFTSNASLSIQLE 95

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV-----IQA 121
             S       +           E+   +     SVV+ S      I I   +     + +
Sbjct: 96  NGSLEKYSNSQLK---------EVSNFLTGIFNSVVNRSRYPKSGIDIFLYLTYDKDLNS 146

Query: 122 D-------GGTRTAAITGAWVALHDCLQHMEDCS 148
           D              ITG  +AL D    + D +
Sbjct: 147 DESKMGHLSSIIPYCITGITLALVDAGIEVLDMA 180


>gi|239636248|ref|ZP_04677250.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri
          L37603]
 gi|239597603|gb|EEQ80098.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri
          L37603]
          Length = 89

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYG 64
          R +++    ++K A G+ LV++GDT +L+TAT         R+     +T  Y 
Sbjct: 15 RSLTIETGQLAKQANGAVLVRYGDTVVLSTAT----ASKEPRDGDFFPLTVNYE 64


>gi|94502417|ref|ZP_01308863.1| polyribonucleotide nucleotidyltransferase [Candidatus Sulcia
           muelleri str. Hc (Homalodisca coagulata)]
 gi|94451026|gb|EAT14005.1| polyribonucleotide nucleotidyltransferase [Candidatus Sulcia
           muelleri str. Hc (Homalodisca coagulata)]
          Length = 267

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 20/118 (16%)

Query: 128 AAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML----CGYPIV--DLDYGE 181
           A +  + +AL D                ++K  V+ IS G++     G  I+  DL   E
Sbjct: 1   ATVCASTLALMDSGI-------------IVKRPVSGISMGLIMNYLTGEAIILSDLLGDE 47

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           D   D+D     T+ G +   Q   + +  + D     +  AK  +  +IK     +S
Sbjct: 48  DYIGDMDFKITGTEYG-MTACQMDIKISGITYDVLSYTIFKAKKGLLFIIKKMLTTLS 104


>gi|261328578|emb|CBH11556.1| ribosomal RNA processing protein 45 [Trypanosoma brucei gambiense
           DAL972]
          Length = 363

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 65/186 (34%), Gaps = 41/186 (22%)

Query: 1   MRLSGRQENQMREISLT-----RRVSKYAEGSCLVKFGD---THLLTTATLEEKVPMWIR 52
           +R   R   QMRE+S+      R V        +V+ G    T  + TA +E       +
Sbjct: 31  LRPDQRTAQQMREVSVEFPLLSRDV-------VVVRCGGSVVTAAIATALVEPT----PQ 79

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQE-----IQRMIGRALRSVVD---L 104
             KHG +             R+  E  S    G +Q+     ++R++      V+D   L
Sbjct: 80  RPKHGLLHFSVR--------RLHTERDSPAADGSTQKNLVAFLERLVRTG--GVIDTAGL 129

Query: 105 SALGSRQII---IDCDVIQADGGTRTAAITGAWVALHDCLQH-MEDCSNKFQLSQVLKGH 160
             L  +++    +D  ++  +G    AA+      L    +  +    +   +    +  
Sbjct: 130 CVLPGQKVWSLTVDVTIMNDEGNCNDAAVWAVIALLMHHRRPELTVRGSSVIVHPPHERE 189

Query: 161 VAAISC 166
              +S 
Sbjct: 190 PVPLSV 195


>gi|320590667|gb|EFX03110.1| exosome complex subunit [Grosmannia clavigera kw1407]
          Length = 246

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 18/101 (17%)

Query: 21  SKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80
              A+GS     G   +  +A    +      +     I              V R A  
Sbjct: 13  LPRADGSATYSHGGYTVTASANGPIEAQRRDEDPDAANIDV------------VVRPAAG 60

Query: 81  -GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
            G    R+ E+  ++ + L+ +V +       I +   V+Q
Sbjct: 61  VGGPSERNHEL--ILQKTLQDIVLVQEFPRCTIQV---VLQ 96


>gi|72389791|ref|XP_845190.1| ribosomal RNA processing protein 45 [Trypanosoma brucei TREU927]
 gi|62360049|gb|AAX80471.1| ribosomal RNA processing protein 45 [Trypanosoma brucei]
 gi|70801725|gb|AAZ11631.1| ribosomal RNA processing protein 45 [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
          Length = 363

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 65/186 (34%), Gaps = 41/186 (22%)

Query: 1   MRLSGRQENQMREISLT-----RRVSKYAEGSCLVKFGD---THLLTTATLEEKVPMWIR 52
           +R   R   QMRE+S+      R V        +V+ G    T  + TA +E       +
Sbjct: 31  LRPDQRTAQQMREVSVEFPLLSRDV-------VVVRCGGSVVTAAIATALVEPT----PQ 79

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQE-----IQRMIGRALRSVVD---L 104
             KHG +             R+  E  S    G +Q+     ++R++      V+D   L
Sbjct: 80  RPKHGLLHFSVR--------RLHTERDSPAADGSTQKNLVAFLERLVRTG--GVIDTAGL 129

Query: 105 SALGSRQII---IDCDVIQADGGTRTAAITGAWVALHDCLQH-MEDCSNKFQLSQVLKGH 160
             L  +++    +D  ++  +G    AA+      L    +  +    +   +    +  
Sbjct: 130 CVLPGQKVWSLTVDVTIMNDEGNCNDAAVWAVIALLMHHRRPELTVRGSSVIVHPPHERE 189

Query: 161 VAAISC 166
              +S 
Sbjct: 190 PVPLSV 195


>gi|149237382|ref|XP_001524568.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146452103|gb|EDK46359.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 292

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 88/275 (32%), Gaps = 46/275 (16%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKF--GDTHLLTTATLEEKVPMWIRNTKHGW 58
           +R   R  +Q R +  T      + GS  ++   G        +++ KV  +     H  
Sbjct: 21  IRPDSRSTHQYRPLEATTSFLPGSNGSARIRLSDGSE---CIVSVKSKVVTYDARINHNA 77

Query: 59  ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRAL-RSVVDLSALGSRQIIIDCD 117
           +  +  ++         R+  +     R Q +  ++ +     V+ L++  + ++ IDC 
Sbjct: 78  VELDIDIVGY-------RDDSNYVANLRYQ-LSNLLQQNFPHDVLKLTSRYAFKLFIDCI 129

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHME--------------------------DCSNKF 151
           VI       +      ++AL      +                               + 
Sbjct: 130 VISHTSYPLSLISFATYLALKLTKLPLLISDVNDEEVAELPTFSDDWDNATSLSQILQEK 189

Query: 152 QLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERAT- 210
           Q++         ++ G++    I D    E+  ++     V   +G ++    +A  ++ 
Sbjct: 190 QIASADFQPPVLVTIGVVGSNLIFDPSLEEEQVLENSL-IVGFYNGKVITPILNANFSSN 248

Query: 211 ----FSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241
               F +      L L+      +IK    ++  E
Sbjct: 249 NYKGFDKSLMIKALTLSNKFCPYIIKALDTLVEQE 283


>gi|169839952|ref|ZP_02873140.1| hypothetical protein cdivTM_22959 [candidate division TM7
          single-cell isolate TM7a]
          Length = 27

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 15/18 (83%)

Query: 29 LVKFGDTHLLTTATLEEK 46
          L++FG+T ++  AT+EEK
Sbjct: 6  LIEFGNTKVICNATIEEK 23


>gi|198433182|ref|XP_002130561.1| PREDICTED: similar to predicted protein isoform 2 [Ciona
           intestinalis]
          Length = 193

 Score = 39.3 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 58/205 (28%), Gaps = 18/205 (8%)

Query: 38  LTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRA 97
           +        +    +      +  ++                 G      + ++R +   
Sbjct: 1   MVAVYGPGDLKETKQEIDKALVEVDFR-------------PKLGSPTVNEKYLERFVQGV 47

Query: 98  LRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL 157
             + + L+        I   ++Q  G   + AI    VAL D    M+       ++   
Sbjct: 48  CENAIMLALHPRTAFAIIVQIMQDQGSLLSCAINAVCVALQDAGVSMKHLPVAVTVALRK 107

Query: 158 KGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
           +          +    I++    E+S       FV       +    S            
Sbjct: 108 ESESELEDATDV---LIINPTIKEESESFSILTFVFDSVNKNLLCMHSQ--GPLLPKQHE 162

Query: 218 AMLNLAKDRIADLIKLQKDVISNEV 242
             L  AK+   +++K  +D ++ +V
Sbjct: 163 RCLKAAKEATEEVLKFFRDSVTQKV 187


>gi|302816705|ref|XP_002990031.1| hypothetical protein SELMODRAFT_428535 [Selaginella moellendorffii]
 gi|300142342|gb|EFJ09044.1| hypothetical protein SELMODRAFT_428535 [Selaginella moellendorffii]
          Length = 542

 Score = 39.3 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 62/209 (29%), Gaps = 45/209 (21%)

Query: 1   MRLSGRQENQMREISL---TRRVSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNT 54
           +R  GR     R + +      V         +  G T ++    +A++E   P +    
Sbjct: 15  VRYDGRGPFDARRLIIFPSKTGV---------IYLG-TSVIQASVSASVESVHPFF---- 60

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
               +  E+   P   G                 E+ R I   L   V   A+  + + I
Sbjct: 61  ---NVHTEFDEPPLDIGPE---------------ELSRKITCLLSECVC--AMPGKSLRI 100

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
              V    G      I GA +A+   +   +    +F +                    +
Sbjct: 101 AIWVRHQGGNV----IDGANIAVLAAILSFQRREAEFMVKVQQLPITVTFGVFDSNELVV 156

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQ 203
           +D  + E+  +     F +   G I  ++
Sbjct: 157 LDPCFREEPLLRGTLTFTV-SDGKIPLME 184


>gi|169610820|ref|XP_001798828.1| hypothetical protein SNOG_08517 [Phaeosphaeria nodorum SN15]
 gi|160702162|gb|EAT83685.2| hypothetical protein SNOG_08517 [Phaeosphaeria nodorum SN15]
          Length = 281

 Score = 39.3 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 33/258 (12%), Positives = 73/258 (28%), Gaps = 42/258 (16%)

Query: 18  RRVSKYAEGSCLVKFG--------------DT-HLLTTATLEEKVPMWIRNTKHGWITAE 62
             +   A GS  ++                 T  +  +    + +P     +    +T  
Sbjct: 7   TSIIPSASGSAYLEIPSSSSPTSSTLVSPTSTLKITASVQGPKPLPRSAPFSPSLLLTTT 66

Query: 63  YGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD 122
               P +T  R +R  +        +++   +  ALR V+         + +   +++ D
Sbjct: 67  VKFAPFAT--RHRRGYIR---DSTERDLGVHLESALRGVIIGERWPKSGVEVVVTILEGD 121

Query: 123 -----GGTRTAAITGAW-------VALHDCLQHMEDCSNKFQLSQVLKGHVAAI-----S 165
                G + T +            +A    +              V+ G VAAI     S
Sbjct: 122 EDGWWGDSDTESSASGSGWGLLNVLAGCITVASAAITDAGIDCVDVVTGGVAAIARNPDS 181

Query: 166 CGMLCGYPIVDLDYGEDSTIDVDANFV-MTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224
                   ++D    E   +        +     I E+    +  T        ++  A 
Sbjct: 182 KEQQELTRLLDPCPAEHKEVVAACAVAYLASRDEITEMWIKGDVGT----EPDVLVEGAT 237

Query: 225 DRIADLIKLQKDVISNEV 242
                 + + K+V+   +
Sbjct: 238 HAAVGSLAVVKEVLLEAL 255


>gi|319411528|emb|CBQ73572.1| conserved hypothetical protein [Sporisorium reilianum]
          Length = 332

 Score = 38.9 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 20/56 (35%)

Query: 8  ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
             +R +S        ++ S    FG  H++ + +   +V +    T    +   Y
Sbjct: 14 PTALRPLSADLGTLARSDASASFSFGPVHVVASVSGPTEVRIRDELTDRATLDVIY 69


>gi|328850724|gb|EGF99885.1| hypothetical protein MELLADRAFT_68277 [Melampsora larici-populina
          98AG31]
          Length = 252

 Score = 38.9 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSC 28
          +R  GR     R I++   VS  A GS 
Sbjct: 25 LRADGRPLLSFRPINIITNVSAQANGSA 52


>gi|126654493|ref|XP_001388417.1| exoribonuclease PH [Cryptosporidium parvum Iowa II]
 gi|126117122|gb|EAZ51222.1| exoribonuclease PH, putative [Cryptosporidium parvum Iowa II]
          Length = 295

 Score = 38.9 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 17/43 (39%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL 43
          +R  GR     R I +   V   A GS  ++  +  ++    +
Sbjct: 36 IRNDGRDLTDFRPIVIALDVISTANGSSRIRNDELDIIVAVKV 78


>gi|223972967|gb|ACN30671.1| unknown [Zea mays]
          Length = 193

 Score = 38.9 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 15/136 (11%)

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAA-------- 163
           + ID  V+ +DG    A      VAL D      + S      +  +  V+         
Sbjct: 44  LYIDGLVVSSDGNLLDALAVAIKVALSDTGIPKVNVSVSAASDEEPEVDVSDEEFLQFDT 103

Query: 164 ------ISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFF 217
                 I+   +  + IVD    E+S +    +  +   G I  +      A       F
Sbjct: 104 SGVPVIITLTKVGRHYIVDATSEEESQMSSAVSVSVNRHGQICGLTKRG-GAGLDPGVIF 162

Query: 218 AMLNLAKDRIADLIKL 233
            M+++AK      I L
Sbjct: 163 DMISVAKHVSQQFISL 178


>gi|159111134|ref|XP_001705799.1| 3' exoribonuclease, putative [Giardia lamblia ATCC 50803]
 gi|157433889|gb|EDO78125.1| 3 exoribonuclease, putative [Giardia lamblia ATCC 50803]
          Length = 261

 Score = 38.9 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
          +R  GR++ + RE ++       + GS   + G T L+ +  L+
Sbjct: 5  LRPDGREKLEHREPTVLFNCISTSTGSVRFRLGGTDLIASVYLD 48


>gi|302771127|ref|XP_002968982.1| hypothetical protein SELMODRAFT_409742 [Selaginella moellendorffii]
 gi|300163487|gb|EFJ30098.1| hypothetical protein SELMODRAFT_409742 [Selaginella moellendorffii]
          Length = 497

 Score = 38.9 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 62/209 (29%), Gaps = 45/209 (21%)

Query: 1   MRLSGRQENQMREISL---TRRVSKYAEGSCLVKFGDTHLL---TTATLEEKVPMWIRNT 54
           +R  GR     R + +      V         +  G T ++    +A++E   P +    
Sbjct: 15  VRYDGRGPFDARRLIIFPSKTGV---------IYLG-TSVIQASVSASVESVHPFF---- 60

Query: 55  KHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIII 114
               +  E+   P   G                 E+ R I   L   V   A+  + + I
Sbjct: 61  ---NVHTEFDEPPLDIGPE---------------ELSRKITCFLSECVC--AMPGKSLRI 100

Query: 115 DCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPI 174
              V    G      I GA +A+   +   +    +F +                    +
Sbjct: 101 AIWVRHQGGNV----IDGANIAVLAAILSFQRREAEFMVKVQQLPITVTFGVFDSNELVV 156

Query: 175 VDLDYGEDSTIDVDANFVMTDSGHIVEVQ 203
           +D  + E+  +     F +   G I  ++
Sbjct: 157 LDPCFREEPLLRGTLTFTV-SDGKIPLME 184


>gi|260944648|ref|XP_002616622.1| hypothetical protein CLUG_03863 [Clavispora lusitaniae ATCC
          42720]
 gi|238850271|gb|EEQ39735.1| hypothetical protein CLUG_03863 [Clavispora lusitaniae ATCC
          42720]
          Length = 288

 Score = 38.9 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKF 32
          +R  GR++ Q R +  T      + GS  ++ 
Sbjct: 21 IRPDGRKKFQCRPLEATTAFLPSSNGSARIRM 52


>gi|190348048|gb|EDK40434.2| hypothetical protein PGUG_04533 [Meyerozyma guilliermondii ATCC
          6260]
          Length = 314

 Score = 38.5 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 6/32 (18%), Positives = 12/32 (37%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKF 32
          +R   R + Q R +         + GS  ++ 
Sbjct: 50 IRPDRRADYQFRPLEAKTGFLPGSNGSARIRL 81


>gi|146415666|ref|XP_001483803.1| hypothetical protein PGUG_04533 [Meyerozyma guilliermondii ATCC
          6260]
          Length = 314

 Score = 38.5 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 6/32 (18%), Positives = 12/32 (37%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKF 32
          +R   R + Q R +         + GS  ++ 
Sbjct: 50 IRPDRRADYQFRPLEAKTGFLPGSNGSARIRL 81


>gi|253745727|gb|EET01463.1| 3' exoribonuclease, putative [Giardia intestinalis ATCC 50581]
          Length = 265

 Score = 38.5 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLE 44
          +R  GR+  + RE ++       + GS   + G T L+ +  L+
Sbjct: 5  LRPDGRERLEHREPTVLFNCISTSTGSVRFRLGGTDLIASVYLD 48


>gi|268611434|ref|ZP_06145161.1| beta-lactamase class C domain-containing protein [Ruminococcus
           flavefaciens FD-1]
          Length = 636

 Score = 38.5 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225
           DL          D NF+ T  G  V+V G+AE+ T SQD     +  A+ 
Sbjct: 374 DLC----DRTQPDINFMYTSDGVFVKVTGNAEKGTVSQDSDNTAIRFAEK 419


>gi|62867371|dbj|BAD95986.1| polyribonucleotide nuculeotidyltransferase [Campylobacter lari]
          Length = 243

 Score = 38.5 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 161 VAAISCGMLCGY----PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
           VA ++ G++        + D+   ED   D+D     +  G I  +Q   +     Q   
Sbjct: 9   VAGVAMGLVFEDEKYAILTDIMGLEDHDGDMDFKVAGSYEG-ITALQMDIKLGGIEQQVL 67

Query: 217 FAMLNLAKDRIADLIKLQKDV 237
              L  AK+    ++KL ++ 
Sbjct: 68  KEALYQAKEAREHILKLMEEA 88


>gi|327306900|ref|XP_003238141.1| 3' exoribonuclease [Trichophyton rubrum CBS 118892]
 gi|326458397|gb|EGD83850.1| 3' exoribonuclease [Trichophyton rubrum CBS 118892]
          Length = 415

 Score = 38.5 bits (89), Expect = 0.80,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 4  SGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA 41
          +GR + Q R  S++     +  G  +V+ GDT  +   
Sbjct: 55 NGRTDTQFRPASVSTGSLTHTNGGAVVRMGDTAAVCGV 92


>gi|297609111|ref|NP_001062684.2| Os09g0252000 [Oryza sativa Japonica Group]
 gi|255678713|dbj|BAF24598.2| Os09g0252000 [Oryza sativa Japonica Group]
          Length = 59

 Score = 38.5 bits (89), Expect = 0.80,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 13/52 (25%)

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
           GTR A I  A +AL D    M D              V + S G LC  P++
Sbjct: 7   GTRAACINAATLALADAGIPMRDI-------------VTSCSAGYLCSTPLL 45


>gi|323334135|gb|EGA75519.1| Rrp45p [Saccharomyces cerevisiae AWRI796]
          Length = 255

 Score = 38.1 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 41/135 (30%), Gaps = 15/135 (11%)

Query: 32  FGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEI- 90
            G+T +    + +   P   R    G       + P +          +G   G  + + 
Sbjct: 1   MGNTKVHCRISCQIAQPYEDR-PFEGLFVISTEISPMAGSQ-----FENGNITGEDEVLC 54

Query: 91  QRMIGRALR--SVVDLSALGSRQ------IIIDCDVIQADGGTRTAAITGAWVALHDCLQ 142
            R+I +++R    +D+  L          +  D   +  DGG   A+       L    +
Sbjct: 55  SRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKK 114

Query: 143 HMEDCSNKFQLSQVL 157
                  +  +   +
Sbjct: 115 PDITVHGEQIIVHPV 129


>gi|297825843|ref|XP_002880804.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297326643|gb|EFH57063.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 140

 Score = 38.1 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 13/96 (13%)

Query: 30  VKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQE 89
            + GDT +L      +       N +       +                +G+ G   +E
Sbjct: 27  YEKGDTKVLAAVYGPKAGTKKNENDEKACFEVIWK-------------PKTGQIGKVEKE 73

Query: 90  IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGT 125
            + ++ R ++S+  L+   +    +   V+  DG  
Sbjct: 74  YEMILKRTMQSICVLTVNPNTTTSVIIQVVHDDGSI 109


>gi|14250910|emb|CAC39260.1| Rrp45p homologue [Trypanosoma brucei]
          Length = 363

 Score = 38.1 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 65/186 (34%), Gaps = 41/186 (22%)

Query: 1   MRLSGRQENQMREISLT-----RRVSKYAEGSCLVKFGD---THLLTTATLEEKVPMWIR 52
           +R   R   QMRE+S+      R V        +V+ G    T  + TA +E       +
Sbjct: 31  LRPDQRTAQQMREVSVEFPLLSRDV-------VVVRCGGSVVTAAIATALVEPT----PQ 79

Query: 53  NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQE-----IQRMIGRALRSVVD---L 104
             KHG +             R+  E  S    G +Q+     ++R++      V+D   L
Sbjct: 80  RPKHGLLHFSVR--------RLHTEKDSPAADGSTQKNLVAFLERLVRTG--GVIDTAGL 129

Query: 105 SALGSRQII---IDCDVIQADGGTRTAAITGAWVALHDCLQH-MEDCSNKFQLSQVLKGH 160
             L  +++    ++  ++  +G    AA+      L    +  +    +   +    +  
Sbjct: 130 CVLPGQKVWSLTVNVTIMNDEGNCNDAAVWAVIALLMHHRRPELTVRGSSVIVHPPHERE 189

Query: 161 VAAISC 166
              +S 
Sbjct: 190 PVPLSV 195


>gi|254583946|ref|XP_002497541.1| ZYRO0F07920p [Zygosaccharomyces rouxii]
 gi|238940434|emb|CAR28608.1| ZYRO0F07920p [Zygosaccharomyces rouxii]
          Length = 265

 Score = 37.8 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 12/29 (41%)

Query: 2  RLSGRQENQMREISLTRRVSKYAEGSCLV 30
          R  GR  +Q R + +       + GS  +
Sbjct: 22 RPDGRLPHQFRPLEVYTDFLPSSNGSSRI 50


>gi|88802441|ref|ZP_01117968.1| aminoacyl-histidine dipeptidase [Polaribacter irgensii 23-P]
 gi|88781299|gb|EAR12477.1| aminoacyl-histidine dipeptidase [Polaribacter irgensii 23-P]
          Length = 486

 Score = 37.4 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 53/154 (34%), Gaps = 22/154 (14%)

Query: 75  KREAVSGRQGGRSQEIQRMIG----RALRSVVDLSALGSRQ------IIIDCDVIQADGG 124
           K+ A  G +  ++  +Q  +     +   ++ D    G +       +  D   + AD G
Sbjct: 59  KKPATKGFENRKTVVMQSHLDMVHQKNAETIFDFEIEGIKMLVEGDWVTADGTTLGADNG 118

Query: 125 TRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED-- 182
              A+I     ++     ++E      + + +       +  G+L G  +++LD  ED  
Sbjct: 119 LGVASIMAVLASIEIEHPNLEALFTIDEETGM--TGAKGLEGGILEGEILLNLDTEEDDE 176

Query: 183 ----STIDVDANFVMTDSGHIVEVQGSAERATFS 212
                   VD     T      E Q +     F+
Sbjct: 177 IGMGCAGGVDITANRTYR----EEQSTDSATGFT 206


>gi|50289635|ref|XP_447249.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526558|emb|CAG60182.1| unnamed protein product [Candida glabrata]
          Length = 264

 Score = 37.4 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLV 30
          +R  GR+  Q R I L       + GS  +
Sbjct: 21 IRPDGREAYQNRPIELFVNFLPSSNGSSRI 50


>gi|312095655|ref|XP_003148426.1| hypothetical protein LOAG_12866 [Loa loa]
 gi|307756410|gb|EFO15644.1| hypothetical protein LOAG_12866 [Loa loa]
          Length = 276

 Score = 37.4 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 15/38 (39%)

Query: 3  LSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT 40
            GR  ++ R I L   V+  + GS   + G   +   
Sbjct: 25 PDGRSISRFRPIMLRMGVNGRSAGSSFARQGGATVTCN 62


>gi|320582330|gb|EFW96547.1| Protein involved in rRNA processing [Pichia angusta DL-1]
          Length = 357

 Score = 37.4 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 15/58 (25%)

Query: 1  MRLSGRQENQMREISLTR-RVSKYAE--------------GSCLVKFGDTHLLTTATL 43
          +R S R+ ++ R + ++R  V +Y                GS +VK G T ++   + 
Sbjct: 34 LRPSLRKFDEFRPVVISRAGVGRYEASEPNGDINGVGSVLGSSIVKSGKTTVICLISG 91


>gi|320584037|gb|EFW98249.1| exosome component [Pichia angusta DL-1]
          Length = 239

 Score = 37.0 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 49/150 (32%), Gaps = 22/150 (14%)

Query: 13  EISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRN-TKHGWITAEYGMLPRSTG 71
           +I L   + +   GS  ++   T ++T+       P + R+      +     +      
Sbjct: 32  KIFLETGLIQNCSGSSYLENDKTIIITSIYGPR--PNFTRSFNDQASLKVGIELSKFLPL 89

Query: 72  NRVKREAVSGRQGGRSQEIQRMIGRALR--------SVVDLSALGSRQIIIDCDVIQADG 123
           + +K    +          +R+I  +L         S++ L       I I   V+  + 
Sbjct: 90  DNLKDNRKNITPDK-----ERLIA-SLESFMLSNFQSLILLQNYPKSSIEIFVQVVALNP 143

Query: 124 G-----TRTAAITGAWVALHDCLQHMEDCS 148
                 T    I G  VAL D   ++   +
Sbjct: 144 AHSLVYTLKNIINGVSVALVDSGLNIRSVA 173


>gi|156065953|ref|XP_001598898.1| hypothetical protein SS1G_00987 [Sclerotinia sclerotiorum 1980]
 gi|154691846|gb|EDN91584.1| hypothetical protein SS1G_00987 [Sclerotinia sclerotiorum 1980
          UF-70]
          Length = 377

 Score = 37.0 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLE-EKVPMWIRNTKHG 57
          +R   R   Q R +     V     GS  + F D T  +     E EK     +  + G
Sbjct: 29 IRPDARTSTQFRPLIAECDVLPGTNGSARICFADGTEAIVGVKCEVEKSRPTYQGAEFG 87


>gi|312220825|emb|CBY00766.1| hypothetical protein [Leptosphaeria maculans]
          Length = 882

 Score = 37.0 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 10/74 (13%)

Query: 24  AEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQ 83
           AEGS            +A+     P    + K G+++A        TG    R      +
Sbjct: 732 AEGSVY----------SASRGRTEPPTPDDQKTGFLSASRRSSRVWTGGNRSRTGSPTNE 781

Query: 84  GGRSQEIQRMIGRA 97
              S  I R+ GRA
Sbjct: 782 SRLSLTISRLTGRA 795


>gi|291286366|ref|YP_003503182.1| UDP-4-keto-6-deoxy-N-acetylglucosamine4-aminotra nsferase
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290883526|gb|ADD67226.1| UDP-4-keto-6-deoxy-N-acetylglucosamine4-aminotra nsferase
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 389

 Score = 37.0 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 45/137 (32%), Gaps = 29/137 (21%)

Query: 107 LGSRQIIIDCDVIQAD-------------------GGTRTAAITGAWVALHDCLQHMEDC 147
           L    I    +V+++D                   G T T A++    ALH     +   
Sbjct: 11  LDKSDIDAVAEVLKSDFLTTGPAVEKFEDAISEYTGATYTVAVSSGTAALHLSALCLIKP 70

Query: 148 SNKFQLSQVLKGHVAAISCGMLCGYPI-VDLDYGEDSTIDVDANFVMTDSG----HIVEV 202
             K  +S  +     A +     G P+  D+D  ++  ID+D    M  S     H++  
Sbjct: 71  GEKVLVS-AVTFAATANAVFYAGGIPVFCDID--DEGNIDLDLCVEMIRSDTSIRHLIVT 127

Query: 203 QGSAERATFSQDHFFAM 219
             +       QD    +
Sbjct: 128 HMTGR--PVDQDKLEQL 142


>gi|50550415|ref|XP_502680.1| YALI0D11000p [Yarrowia lipolytica]
 gi|49648548|emb|CAG80868.1| YALI0D11000p [Yarrowia lipolytica]
          Length = 312

 Score = 37.0 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 13/31 (41%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVK 31
          +R   R+ NQ R +   +       GS  ++
Sbjct: 21 IRPDAREPNQFRPVDAAQNFLPATNGSARIR 51


>gi|167384641|ref|XP_001737034.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165900310|gb|EDR26654.1| hypothetical protein EDI_271600 [Entamoeba dispar SAW760]
          Length = 232

 Score = 37.0 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 31/138 (22%)

Query: 16  LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           + + V    + S   + G+T ++   +  E V M     +           P+     +K
Sbjct: 15  IKKNVIHNLQSSASYRIGNTQVVCGIS-TEIVQMIQDGKE-----------PQHIEVEIK 62

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ----------------IIIDCDVI 119
           R  ++  +    + IQ+ I   L    D    G+R+                I +   +I
Sbjct: 63  RSGLNEDKSAMIESIQKWIEEVLN---DKDLFGNREKFIVSTEDKETSFYQKIRLVNYII 119

Query: 120 QADGGTRTAAITGAWVAL 137
             DG     AI  +  AL
Sbjct: 120 DDDGSVFDVAILASITAL 137


>gi|90085152|dbj|BAE91317.1| unnamed protein product [Macaca fascicularis]
          Length = 250

 Score = 37.0 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232
            +VD +  E+  +D      M     I  +Q S       +D       +A  ++A++ +
Sbjct: 16  LLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCSKIAGVKVAEITE 74

Query: 233 LQKDVISNE 241
           L    + N+
Sbjct: 75  LILKALEND 83


>gi|255721201|ref|XP_002545535.1| hypothetical protein CTRG_00316 [Candida tropicalis MYA-3404]
 gi|240136024|gb|EER35577.1| hypothetical protein CTRG_00316 [Candida tropicalis MYA-3404]
          Length = 291

 Score = 36.6 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 14/34 (41%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD 34
          +R   R  +Q R +         + GS  ++ GD
Sbjct: 22 IRPDLRSIHQYRPLVAKTSFLPGSNGSARIRTGD 55


>gi|167377009|ref|XP_001734248.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165904362|gb|EDR29599.1| hypothetical protein EDI_319660 [Entamoeba dispar SAW760]
          Length = 145

 Score = 36.6 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 31/138 (22%)

Query: 16  LTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVK 75
           + + V    + S   + G+T ++   +  E V M     +           P+     +K
Sbjct: 15  IKKNVIHNLQSSASYRIGNTQVVCGIS-TEIVQMIQDGKE-----------PQHIEVEIK 62

Query: 76  REAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ----------------IIIDCDVI 119
           R  ++  +    + IQ+ I   L    D    G+R+                I +   +I
Sbjct: 63  RSGLNEDKSAMIESIQKWIEEVLN---DKDLFGNREKFIVSTEDKETSFYQKIRLVNYII 119

Query: 120 QADGGTRTAAITGAWVAL 137
             DG     AI  +  AL
Sbjct: 120 DDDGSVFDVAILASITAL 137


>gi|19074636|ref|NP_586142.1| BELONGS TO THE RNASE PH (EXOSOME) FAMILY [Encephalitozoon cuniculi
           GB-M1]
 gi|19069278|emb|CAD25746.1| BELONGS TO THE RNASE PH (EXOSOME) FAMILY [Encephalitozoon cuniculi
           GB-M1]
          Length = 188

 Score = 36.6 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 43/170 (25%), Gaps = 30/170 (17%)

Query: 14  ISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR 73
           I     V  +  GS    + +T +               +     +   +          
Sbjct: 4   IKSMVSVISHCTGSSRFSYNNTTVFCVVHGPSDAISRQEDPDRAILDVRW---------- 53

Query: 74  VKREAVSGRQGGRSQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAIT 131
             R+ V     GR  +    R+I + L   + L     + I I  +V+   G TR     
Sbjct: 54  --RDMVL--INGRVYDKYFSRVIEKILSKNIILELDACKVIQISFNVV---GETRNT--- 103

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGE 181
                                    L+    A S  M     +V  D  E
Sbjct: 104 -------LFCAVNAALLALADGGIPLRSMFYASSSFMHEEEVVV-FDKDE 145


>gi|325116060|emb|CBZ51614.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 368

 Score = 36.6 bits (84), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 18/48 (37%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP 48
          +R  GR     R+  ++        GS  V+ G+ + L     E   P
Sbjct: 23 VRADGRSFLTYRQPLISSNTLTNCCGSASVRAGNNYYLAGVKCEVGPP 70


>gi|241122574|ref|XP_002403584.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp43, putative
           [Ixodes scapularis]
 gi|215493474|gb|EEC03115.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp43, putative
           [Ixodes scapularis]
          Length = 195

 Score = 36.6 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 33/112 (29%), Gaps = 1/112 (0%)

Query: 129 AITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVD 188
           ++  A        +   D   + +   V  G +AA    +     + D  + E+      
Sbjct: 81  SLCVASCNRVSTAEGKVDVLLEREAVGVSPGPLAASFAVLADDVVVADPTHEEECLAQET 140

Query: 189 ANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
              V+     +  V      +  S +     L  A+  + D   L    ++ 
Sbjct: 141 FTVVLAADDTLCTVHKPG-GSFLSPEQMSDHLEQAQRLVKDSRTLLNTALAT 191


>gi|63376410|gb|AAY40793.1| heat shock protein 70 [Oligocottus maculosus]
          Length = 250

 Score = 36.6 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 17/125 (13%)

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++I  D G RT   T ++VA +D  + + D +              A     L G  I 
Sbjct: 19  VEIIANDQGNRT---TPSYVAFNDTERLIGDAAKNQVALNPSNTVFDAKR---LIGRKI- 71

Query: 176 DLDYGEDSTIDVDAN-----FVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
                +D  +  D        V       ++VQ   E  TFS +   +M+ +    IA+ 
Sbjct: 72  -----DDPVVQADMKHWPFQVVGDGGKPKIQVQHKGEDKTFSPEEISSMVLVKMKEIAEA 126

Query: 231 IKLQK 235
              QK
Sbjct: 127 YLGQK 131


>gi|294874364|ref|XP_002766919.1| hypothetical protein Pmar_PMAR010899 [Perkinsus marinus ATCC 50983]
 gi|239868294|gb|EEQ99636.1| hypothetical protein Pmar_PMAR010899 [Perkinsus marinus ATCC 50983]
          Length = 597

 Score = 36.2 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 47/157 (29%), Gaps = 11/157 (7%)

Query: 28  CLVKFGDTHLLTTATLEEKVPMWIRNTK--HGWITAEYGMLPRSTGNRVKREAVSGRQGG 85
            +V++G+  +   A+   +    +      H  +  +  +   S G   K E        
Sbjct: 57  AVVEWGNYIVFAKASGPRQATGALVGVGRQHDRLALDVNVAASSVGV-TKTEQEKRDADA 115

Query: 86  RSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHME 145
             +++   I   L +VV         + ++  V+            G + A       M 
Sbjct: 116 ICEDLSNTITSGLSAVVVAEHYPKSVLPLNVSVVS--------CPPGGFSAERVLPCAMA 167

Query: 146 DCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGED 182
                  L   +   ++ ++        + D   GED
Sbjct: 168 AAMTATALCVHVSDILSVVNIASRGNCVLADPTLGED 204


>gi|145512139|ref|XP_001441986.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409258|emb|CAK74589.1| unnamed protein product [Paramecium tetraurelia]
          Length = 554

 Score = 36.2 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%)

Query: 182 DSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
           D   + D N +M     I+E+    E   FS++  
Sbjct: 155 DQLFETDLNAIMNRINKIIEILKQKEYGKFSREEL 189


>gi|145590632|ref|YP_001152634.1| glycosyl transferase family protein [Pyrobaculum arsenaticum DSM
           13514]
 gi|145282400|gb|ABP49982.1| glycosyl transferase, family 2 [Pyrobaculum arsenaticum DSM 13514]
          Length = 311

 Score = 36.2 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 51/124 (41%), Gaps = 4/124 (3%)

Query: 90  IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN 149
           I R   +++R+   L  +  + +    +V+  DGG++ ++I     AL + ++ ++    
Sbjct: 11  ILRYSTKSIRAA--LGYIREKGVT-SVEVLYVDGGSKDSSIEVVRDALGNAVRVVDASGT 67

Query: 150 KFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERA 209
               ++ +    ++    +     I+   Y   + +DVD   V  +    V V+  AE  
Sbjct: 68  NIPEARNIVVKESSGDYIVYWDSDILAPRYILANLLDVDKPIVAPERYD-VYVESDAEIE 126

Query: 210 TFSQ 213
              +
Sbjct: 127 ALLR 130


>gi|320106701|ref|YP_004182291.1| DegT/DnrJ/EryC1/StrS aminotransferase [Terriglobus saanensis
           SP1PR4]
 gi|319925222|gb|ADV82297.1| DegT/DnrJ/EryC1/StrS aminotransferase [Terriglobus saanensis
           SP1PR4]
          Length = 447

 Score = 36.2 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 207 ERATFSQDHFFAMLNLAKDRIADLIK 232
           E A FS+D    ML+ AK    ++  
Sbjct: 355 EGAPFSRDQMTKMLDSAKIGTRNIFA 380


>gi|331235381|ref|XP_003330351.1| hypothetical protein PGTG_11688 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309309341|gb|EFP85932.1| hypothetical protein PGTG_11688 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 189

 Score = 36.2 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 14/103 (13%)

Query: 112 IIIDCDVIQADGGTRTAAITGAWVALHDCLQHMED---CSNKFQLSQV---------LKG 159
           + ID   +  DG    A+++    AL      +      +   +L+           ++ 
Sbjct: 48  VYIDIVCLSNDGNLFDASLSATTSALKSARIPVVSFDHETQSLKLANPTHAECVPLAIRT 107

Query: 160 HVAAISCGMLCGYPIV-DLD-YGEDSTIDVDANFVMTDSGHIV 200
            ++  +  +     I+ D   + EDS        V  DS ++V
Sbjct: 108 SISGYTFALYDRSTILPDPCLFEEDSAAGSVTLVVDDDSRNLV 150


>gi|225569862|ref|ZP_03778887.1| hypothetical protein CLOHYLEM_05956 [Clostridium hylemonae DSM
           15053]
 gi|225161332|gb|EEG73951.1| hypothetical protein CLOHYLEM_05956 [Clostridium hylemonae DSM
           15053]
          Length = 681

 Score = 36.2 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 36/106 (33%), Gaps = 24/106 (22%)

Query: 98  LRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVL 157
           L+ ++DLS                 GG R A   GAW AL +    +             
Sbjct: 3   LKPIIDLSKEYGLVFD--------GGGARGAYQIGAWKALREAGVKL------------- 41

Query: 158 KGHVAAISCGMLCGYPIV--DLDYGEDSTIDVDANFVMTDSGHIVE 201
              VA  S G L G  +   D++  ED    +  + VM      +E
Sbjct: 42  -NAVAGTSVGALNGALVCMGDMEKAEDIWSKMTFSSVMDVDDEWME 86


>gi|102139960|gb|ABF70100.1| protein kinase, putative [Musa balbisiana]
          Length = 1016

 Score = 36.2 bits (83), Expect = 4.1,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 8/100 (8%)

Query: 124 GTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDS 183
            TR A   G     +    ++ D ++ +    V    V+ +S       P       ED 
Sbjct: 842 STRIAGTLGYMAPEYAMRGYLTDKADVYSFGVVTLEIVSGMSNTKY--RP------EEDC 893

Query: 184 TIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223
              +D  +V  + G+++E+   A  ++FS +    ML LA
Sbjct: 894 VYLLDWAYVCHEKGNLLELVDPALGSSFSTEEALQMLKLA 933


>gi|296421352|ref|XP_002840229.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636443|emb|CAZ84420.1| unnamed protein product [Tuber melanosporum]
          Length = 279

 Score = 36.2 bits (83), Expect = 4.1,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 13/34 (38%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD 34
          +R   R   Q R +     +     GS  + +GD
Sbjct: 32 IRPDSRTPTQFRPLVAESDILPSTNGSARMIWGD 65


>gi|224537696|ref|ZP_03678235.1| hypothetical protein BACCELL_02578 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520699|gb|EEF89804.1| hypothetical protein BACCELL_02578 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 246

 Score = 36.2 bits (83), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 173 PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDR 226
            + D+   ED   D+D     T +G I   Q   +    S +     LN AK+ 
Sbjct: 13  VLSDILGDEDHLGDMDFKVTGTKNG-ITATQMDIKVDGLSFEILERALNQAKEG 65


>gi|326489127|dbj|BAK01547.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 235

 Score = 36.2 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 22/151 (14%)

Query: 101 VVDLSALGSR------QIIIDCDVIQADGGTRTAAITGAWVALHDCLQH----------- 143
            VD+ +L          + +D  ++   G    AA   A  AL    +            
Sbjct: 20  AVDMESLCVVAGKHVWSLRVDLHILDNGGNLIDAANIAALAALSTFRRPECTVGGDDGQQ 79

Query: 144 --MEDCSNKFQLSQVLKGHVAAISCGMLC--GYPIVDLDYGEDSTIDVDANFVMTDSGHI 199
             + D      L   +     A++          ++D  Y E++ +       +  +G +
Sbjct: 80  VTVHDPEVMDPLPLTIHHLPIAVTFAYFGDGNIMVIDPTYKEEAVMGGRMTATINSNGDV 139

Query: 200 VEVQGSAERATFSQDHFFAMLNLAKDRIADL 230
             +Q +      S       L +A  + AD+
Sbjct: 140 CAIQKAGGEGVMS-SVIMQCLRIASVKAADI 169


>gi|62733251|gb|AAX95368.1| 3' exoribonuclease family, domain 2, putative [Oryza sativa
           Japonica Group]
 gi|62734006|gb|AAX96115.1| 3' exoribonuclease family, domain 2, putative [Oryza sativa
           Japonica Group]
          Length = 129

 Score = 35.8 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 146 DCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
           +  N+ +    +     +++C +     + D    E+S I+     V+  S  IV +Q  
Sbjct: 29  ELVNREKRKLTITNVPFSLTCALHKDNVLADPTAEEESIIETSVTIVLDSSDQIVSIQKP 88

Query: 206 AERATFSQDHFFAMLNLAKDRIADLIKL 233
              A  S       ++LAKDR   L ++
Sbjct: 89  G-GAVTSMTTIKECISLAKDRRRKLREI 115


>gi|210148715|gb|ACJ09263.1| heat shock protein 70 [Toxoplasma gondii]
          Length = 638

 Score = 35.8 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 43/126 (34%), Gaps = 10/126 (7%)

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++I  D G RT   T ++VA  D  + + D +              A     L G    
Sbjct: 14  VEIIANDQGNRT---TPSYVAFTDTERLVGDAAKNQVARNPENTIFDAKR---LIGRKFD 67

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK-DRIADLI--K 232
           D     D                ++EV    E+ TF  +   AM+ L K   IA+    K
Sbjct: 68  DPSVQSDMKHWPFKVIAGPGDKPLIEVTYQGEKKTFHPEEVSAMV-LGKMKEIAEAYLGK 126

Query: 233 LQKDVI 238
             K+ +
Sbjct: 127 EVKEAV 132


>gi|255716180|ref|XP_002554371.1| KLTH0F03718p [Lachancea thermotolerans]
 gi|238935754|emb|CAR23934.1| KLTH0F03718p [Lachancea thermotolerans]
          Length = 379

 Score = 35.8 bits (82), Expect = 5.2,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 17/132 (12%)

Query: 1   MRLSGRQENQMREISLTRR---VSKYAE---------GSCLVKFGDTHLLTTAT---LEE 45
           +R S R   + R + ++      +  A+         GS ++K G T ++T+ T   +EE
Sbjct: 34  LRPSLRSFEEFRNVEISDGGLSFASNADIDRKGNNILGSNVLKCGKTMVVTSITGGIVEE 93

Query: 46  KVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLS 105
            +     + +    +     L R        E   GR G  + E +  + + LR  V  S
Sbjct: 94  NISGSRVDDESTESSNRADRLSRFAQVHPVVEVERGRVGAPTDE-EMTLSQRLRDCVLHS 152

Query: 106 AL-GSRQIIIDC 116
            L   + + +  
Sbjct: 153 GLIPKKALDVAV 164


>gi|88766395|gb|ABD49717.1| heat shock protein 70 [Metarhizium anisopliae]
 gi|322705307|gb|EFY96894.1| heat shock protein 70 [Metarhizium anisopliae ARSEF 23]
          Length = 663

 Score = 35.8 bits (82), Expect = 5.3,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 45/124 (36%), Gaps = 22/124 (17%)

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
           C++I  D G RT   T ++VA +D  + + D +              A     L G    
Sbjct: 27  CEIIANDQGNRT---TPSYVAFNDTERLIGDAAKNQVTKNPENTVFDAKR---LIGRKFS 80

Query: 176 DLDYGEDSTIDVDA---NF-VMTDSGHI-VEVQGSAERATFSQDH-----FFAMLNLAKD 225
           D D      +  D     F V+  SG   VEVQ   E  TF+ +         M   A+ 
Sbjct: 81  DAD------VQADMKHFPFKVIDKSGKPAVEVQYMGETKTFTPEEISSMILMKMRETAEA 134

Query: 226 RIAD 229
            I +
Sbjct: 135 FIGE 138


>gi|12248795|dbj|BAB20284.1| hsp70 [Toxoplasma gondii]
          Length = 674

 Score = 35.8 bits (82), Expect = 5.3,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 43/126 (34%), Gaps = 10/126 (7%)

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++I  D G RT   T ++VA  D  + + D +              A     L G    
Sbjct: 49  VEIIANDQGNRT---TPSYVAFTDTERLVGDAAKNQVARNPENTIFDAKR---LIGRKFD 102

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK-DRIADLI--K 232
           D     D                ++EV    E+ TF  +   AM+ L K   IA+    K
Sbjct: 103 DPSVQSDMKHWPFKVIAGPGDKPLIEVTYQGEKKTFHPEEVSAMV-LGKMKEIAEAYLGK 161

Query: 233 LQKDVI 238
             K+ +
Sbjct: 162 EVKEAV 167


>gi|237833359|ref|XP_002365977.1| heat shock protein 70, putative [Toxoplasma gondii ME49]
 gi|3850199|gb|AAC72002.1| heat shock protein 70 [Toxoplasma gondii]
 gi|211963641|gb|EEA98836.1| heat shock protein 70, putative [Toxoplasma gondii ME49]
          Length = 674

 Score = 35.8 bits (82), Expect = 5.5,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 43/126 (34%), Gaps = 10/126 (7%)

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++I  D G RT   T ++VA  D  + + D +              A     L G    
Sbjct: 26  VEIIANDQGNRT---TPSYVAFTDTERLVGDAAKNQVARNPENTIFDAKR---LIGRKFD 79

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK-DRIADLI--K 232
           D     D                ++EV    E+ TF  +   AM+ L K   IA+    K
Sbjct: 80  DPSVQSDMKHWPFKVIAGPGDKPLIEVTYQGEKKTFHPEEVSAMV-LGKMKEIAEAYLGK 138

Query: 233 LQKDVI 238
             K+ +
Sbjct: 139 EVKEAV 144


>gi|3850197|gb|AAC72001.1| heat shock protein 70 [Toxoplasma gondii]
 gi|4099058|gb|AAD09230.1| heat shock protein 70 [Toxoplasma gondii]
 gi|221488439|gb|EEE26653.1| heat shock protein, putative [Toxoplasma gondii GT1]
 gi|221508943|gb|EEE34512.1| heat shock protein, putative [Toxoplasma gondii VEG]
          Length = 667

 Score = 35.8 bits (82), Expect = 5.5,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 43/126 (34%), Gaps = 10/126 (7%)

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++I  D G RT   T ++VA  D  + + D +              A     L G    
Sbjct: 26  VEIIANDQGNRT---TPSYVAFTDTERLVGDAAKNQVARNPENTIFDAKR---LIGRKFD 79

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK-DRIADLI--K 232
           D     D                ++EV    E+ TF  +   AM+ L K   IA+    K
Sbjct: 80  DPSVQSDMKHWPFKVIAGPGDKPLIEVTYQGEKKTFHPEEVSAMV-LGKMKEIAEAYLGK 138

Query: 233 LQKDVI 238
             K+ +
Sbjct: 139 EVKEAV 144


>gi|3323502|gb|AAC26629.1| heat shock protein 70 [Toxoplasma gondii]
          Length = 667

 Score = 35.8 bits (82), Expect = 5.6,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 43/126 (34%), Gaps = 10/126 (7%)

Query: 116 CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV 175
            ++I  D G RT   T ++VA  D  + + D +              A     L G    
Sbjct: 26  VEIIANDQGNRT---TPSYVAFTDTERLVGDAAKNQVARNPENTIFDAKR---LIGRKFD 79

Query: 176 DLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK-DRIADLI--K 232
           D     D                ++EV    E+ TF  +   AM+ L K   IA+    K
Sbjct: 80  DPSVQSDMKHWPFKVIAGPGDKPLIEVTYQGEKKTFHPEEVSAMV-LGKMKEIAEAYLGK 138

Query: 233 LQKDVI 238
             K+ +
Sbjct: 139 EVKEAV 144


>gi|313895526|ref|ZP_07829082.1| hypothetical protein HMPREF9162_1557 [Selenomonas sp. oral taxon
          137 str. F0430]
 gi|312975652|gb|EFR41111.1| hypothetical protein HMPREF9162_1557 [Selenomonas sp. oral taxon
          137 str. F0430]
          Length = 55

 Score = 35.8 bits (82), Expect = 5.6,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 12 REISLTRRVS-KYAEGSCLVKFGDTHLLTTAT 42
          R I +      K A G+ LV++GDT +L TAT
Sbjct: 11 RNIIVEHGKMAKQANGAALVRYGDTVVLVTAT 42


>gi|190347983|gb|EDK40359.2| hypothetical protein PGUG_04457 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 325

 Score = 35.8 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 45/126 (35%), Gaps = 11/126 (8%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEG-----SCLVKFGDTHLLTTATLEEKVPMWIRNTK 55
           +R   R+ ++ + +  T      ++G     S +VK G T +    ++          +K
Sbjct: 28  LRPCLREFDEFKPLKTTLGALNTSDGIPVVGSSIVKSGSTTVFCGISVGTVERDTTNTSK 87

Query: 56  HGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMI-GRALR-----SVVDLSALGS 109
           +  I     +    +G     E +       S    R+I   +LR     +V++    G 
Sbjct: 88  YASIYPVVEVSRGRSGAPTDEEMILSESLYESVLHSRIIPRESLRVTPGVAVINDRGTGH 147

Query: 110 RQIIID 115
           + + I 
Sbjct: 148 QSVSIY 153


>gi|119600487|gb|EAW80081.1| hCG1654866, isoform CRA_b [Homo sapiens]
          Length = 109

 Score = 35.8 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 16/96 (16%)

Query: 92  RMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF 151
            ++  AL   + L      Q+     +++  G      +  A +AL      M D     
Sbjct: 1   MVLQEALEPAMCLDRYPHVQLEASELLLEDGGSALATELNTAKLALAYAGMEMNDL---- 56

Query: 152 QLSQVLKGHVAAISCGMLCG---YPIVDLDYGEDST 184
                    V +   G+  G     ++D    E+  
Sbjct: 57  ---------VVSCGLGLAPGSVPTWLLDPMRLEEEH 83


>gi|256070062|ref|XP_002571368.1| ribonuclease pH related [Schistosoma mansoni]
 gi|238652588|emb|CAZ39053.1| ribonuclease pH related [Schistosoma mansoni]
          Length = 173

 Score = 35.5 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 10/75 (13%)

Query: 87  SQE--IQRMIGRALRSVVDLSALGSRQIIIDCDVIQAD--------GGTRTAAITGAWVA 136
           S E  + R++  A+   V L      +  I  +++           G    AAIT A +A
Sbjct: 27  SIEKKLSRLLLSAIEPSVMLHQFPRGKYEIVTNILDIPSYNSSGLIGNCLAAAITCAGLA 86

Query: 137 LHDCLQHMEDCSNKF 151
           L +    M D     
Sbjct: 87  LLNSGVQMYDLLVGL 101


>gi|242779049|ref|XP_002479363.1| 3' exoribonuclease family protein (Rrp42), putative [Talaromyces
          stipitatus ATCC 10500]
 gi|218722982|gb|EED22400.1| 3' exoribonuclease family protein (Rrp42), putative [Talaromyces
          stipitatus ATCC 10500]
          Length = 401

 Score = 35.5 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGD-THLLTTATLE 44
          +R  GR   Q R ++    +     GS  + F D +  +     E
Sbjct: 34 IRPDGRSPTQFRFLTAETGILPGTIGSARIGFADGSEAIVGVKAE 78


>gi|146415516|ref|XP_001483728.1| hypothetical protein PGUG_04457 [Meyerozyma guilliermondii ATCC
          6260]
          Length = 325

 Score = 35.5 bits (81), Expect = 6.4,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEG-----SCLVKFGDTHLLTTATL 43
          +R   R+ ++ + +  T      ++G     S +VK G T +    ++
Sbjct: 28 LRPCLREFDEFKPLKTTLGALNTSDGIPVVGSSIVKSGSTTVFCGISV 75


>gi|213422759|ref|ZP_03355805.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 52

 Score = 35.5 bits (81), Expect = 6.6,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 103 DLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK 150
           D+       + +  ++ +++G +  A++ GA +AL D    ++     
Sbjct: 6   DMDKFP-YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAG 52


>gi|262281983|ref|ZP_06059752.1| polynucleotide phosphorylase [Streptococcus sp. 2_1_36FAA]
 gi|262262437|gb|EEY81134.1| polynucleotide phosphorylase [Streptococcus sp. 2_1_36FAA]
          Length = 75

 Score = 35.5 bits (81), Expect = 7.0,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATL 43
          RE+ +    V+K A GS +V++G++ +LT AT+
Sbjct: 13 RELVVETGQVAKQANGSAVVRYGESTVLTAATM 45


>gi|147852316|emb|CAN82224.1| hypothetical protein VITISV_011872 [Vitis vinifera]
          Length = 1621

 Score = 35.5 bits (81), Expect = 7.0,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 78/283 (27%), Gaps = 61/283 (21%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTT-------------------- 40
           +R   R   + R+ SL       A+GS L K G      T                    
Sbjct: 36  IRPDARPLGRARDTSLALGAVASADGSALAKIG-----CTQNECQYGGERGLGLCGXGXL 90

Query: 41  -ATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALR 99
              L   +                                SG    +  E+  + G+A  
Sbjct: 91  QYYLCVGIFGHFWGPGPHGTITNADFTKAVVPYWASVLQGSGMINLK--ELSLVSGKA-- 146

Query: 100 SVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHM--------------- 144
                    +    +D   + ADG    AA+  A  A       +               
Sbjct: 147 ---------AWMAYLDIYCLDADGSLFDAALLAAVAAFSHLRIPVVSLNEEGRVVVVSEE 197

Query: 145 -------EDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSG 197
                  ++  NK +    L     +++C +   Y + D    E+S ++     V+  SG
Sbjct: 198 NEEGKSEKEPVNKGKRKLTLSSLPFSLTCILHKNYILADPTAEEESIMETLVTVVLDSSG 257

Query: 198 HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240
            +V +                 + L + R+ +L  +  + IS+
Sbjct: 258 QLVSLYKPGGPVLAYASAVQDCIALTRQRVKELKSILNEAISD 300


>gi|71018123|ref|XP_759292.1| hypothetical protein UM03145.1 [Ustilago maydis 521]
 gi|46099142|gb|EAK84375.1| hypothetical protein UM03145.1 [Ustilago maydis 521]
          Length = 332

 Score = 35.5 bits (81), Expect = 7.3,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 21/57 (36%)

Query: 7  QENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEY 63
              +R +S    +   ++ S    FG  +++ + +   +V +    T    +   Y
Sbjct: 18 SPTALRSLSAEFGILARSDASASFSFGPVNVVASVSGPTEVRIRDELTDRATLDVIY 74


>gi|171694984|ref|XP_001912416.1| hypothetical protein [Podospora anserina S mat+]
 gi|170947734|emb|CAP59897.1| unnamed protein product [Podospora anserina S mat+]
          Length = 262

 Score = 35.5 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 55/216 (25%), Gaps = 22/216 (10%)

Query: 18  RRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKRE 77
             V   A+GS         +  +     +      +     +              + R 
Sbjct: 20  LGVLPRADGSAKYSHAGYTVTASVNGPIEAQRRDEHPYEAHVDV------------IVRP 67

Query: 78  AVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRT------AAIT 131
           A  G  G R + ++ ++  +L  ++ +       I I   V  +            A++ 
Sbjct: 68  AA-GVGGTRERHLESILQSSLSQIILVKNFPRSLIQIVLQVEDSPENDYVNTKLVQASLN 126

Query: 132 GAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF 191
            + +        +   S    +         AI         +VD    +          
Sbjct: 127 FSIMPALFQTAVLALLSAGVPIRATATATAVAIVPQDGTKRSVVDPSPRDVEIAQSVHVL 186

Query: 192 VMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRI 227
             T    ++  +       F+   +  +   AKD  
Sbjct: 187 AFTSHDELLLAE---SEGDFTVKEWDDVYETAKDVC 219


>gi|167758618|ref|ZP_02430745.1| hypothetical protein CLOSCI_00958 [Clostridium scindens ATCC 35704]
 gi|167663814|gb|EDS07944.1| hypothetical protein CLOSCI_00958 [Clostridium scindens ATCC 35704]
          Length = 697

 Score = 35.5 bits (81), Expect = 7.6,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 16/81 (19%)

Query: 123 GGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIV--DLDYG 180
           GG R A   GAW AL +    +                VA  S G L G  +   D+D  
Sbjct: 18  GGARGAYQIGAWKALVEAGVKI--------------NAVAGTSVGALNGALVCMGDVDKA 63

Query: 181 EDSTIDVDANFVMTDSGHIVE 201
           ED    +  + VM      +E
Sbjct: 64  EDIWSKMTFSTVMDVDDEWME 84


>gi|320166868|gb|EFW43767.1| opa-interacting protein 2 [Capsaspora owczarzaki ATCC 30864]
          Length = 269

 Score = 35.1 bits (80), Expect = 8.9,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 76/263 (28%), Gaps = 61/263 (23%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTA-TLEEKVPMWIRNTKHGWI 59
           +R  GR   + R+ SL+      A  S            TA ++          +     
Sbjct: 41  LRPDGRGLERFRDTSLSINPLATAHASST---------ATAPSVPAPTTPLKSQS----- 86

Query: 60  TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQ------II 113
            A+ GM           E+     G R               VDL+ L   +      + 
Sbjct: 87  -AQAGMA----------ESNPADAGARGI-------------VDLNELCITRGELCWCLY 122

Query: 114 IDCDVIQADGGTRTAAITGAWVALHDCLQHMEDC------------SNKFQLSQVLKGHV 161
           +D   +   G +  AA+     ALH  +                   N  QL+       
Sbjct: 123 VDAVCLDDAGNSTDAALLAIVGALHALVLPAVTLDAASGKPGFNPSGNSTQLTLPATPFA 182

Query: 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVM---TDSGHIVEVQGSAERATFSQDHFFA 218
           A  S      + + D    E++        V    +++  +  V         S      
Sbjct: 183 ATFSLFDGNAFTLADPTAEEEAMQSGAVTIVADVSSENPTLWTVHKPG-GTPLSATALRQ 241

Query: 219 MLNLAKDRIADLIKLQKDVISNE 241
            ++ A +RI  L  L +  ++++
Sbjct: 242 CISQAVERIKTLDALLQAELASQ 264


>gi|19075004|ref|NP_586510.1| hypothetical protein ECU11_2040 [Encephalitozoon cuniculi GB-M1]
 gi|19069729|emb|CAD26114.1| hypothetical protein [Encephalitozoon cuniculi GB-M1]
          Length = 226

 Score = 35.1 bits (80), Expect = 9.4,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 65/202 (32%), Gaps = 21/202 (10%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           +R   R+  + R   +       ++GS  ++ G++ +        +V +  + T    +T
Sbjct: 20  LRADTRKSEEERRTDVVHSNIAQSDGSIKIRRGESEV--------EVSIQFKETMETLMT 71

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCD--V 118
                    T                S E  ++    + S + L  L S +I I  +  +
Sbjct: 72  QNISGEWLDTNESSME----------SIEFSKIAIPNIVSSMILELLASYKIGIRIELNI 121

Query: 119 IQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLD 178
           +  DG        G  +   +    + D   + +  + +    +        G  +VD  
Sbjct: 122 LSNDGNVYDLFFIGLSILFKNLDMPVIDDLRRSERRK-IDIPTSKTVALFNSGRFVVDPI 180

Query: 179 YGEDSTIDVDANFVMTDSGHIV 200
             E+       +  +  +G ++
Sbjct: 181 MIEEKASCGLMHVFVNSNGALM 202


>gi|332185632|ref|ZP_08387380.1| ferrochelatase [Sphingomonas sp. S17]
 gi|332014610|gb|EGI56667.1| ferrochelatase [Sphingomonas sp. S17]
          Length = 319

 Score = 35.1 bits (80), Expect = 9.6,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 67  PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTR 126
           PR+   R  RE +S     R  EI  ++ + +   + L+    +       V + DG   
Sbjct: 11  PRAV-KRYLREFLS---DRRVIEIPALLWQPILRGIILNTRPKKSAHAYSLVWRDDGSPL 66

Query: 127 TAAITGAWVALHDCLQH 143
            A      VAL D    
Sbjct: 67  AAITRAQAVALKDAFGP 83


>gi|47218998|emb|CAG02036.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1070

 Score = 35.1 bits (80), Expect = 9.6,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 8/57 (14%)

Query: 194 TDSGHIVEVQGS-------AERATFSQD-HFFAMLNLAKDRIADLIKLQKDVISNEV 242
           T    + E+  +       AE A  S+D      L+LA ++  +  ++Q++ ++++V
Sbjct: 721 TSYKELAELHKTNASRASEAEEAALSRDAQAKEKLSLALEKAQEEARIQQEALADQV 777


>gi|309792535|ref|ZP_07686998.1| cell division FtsK/SpoIIIE [Oscillochloris trichoides DG6]
 gi|308225438|gb|EFO79203.1| cell division FtsK/SpoIIIE [Oscillochloris trichoides DG6]
          Length = 812

 Score = 35.1 bits (80), Expect = 9.7,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 54/157 (34%), Gaps = 28/157 (17%)

Query: 66  LPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIID---------- 115
           L  +T    +R  +  R G R+ E  + +GR  R+  DL  +    I+ID          
Sbjct: 532 LKWATREMERRYKIFARHGCRNLESYKQLGRK-RA--DLEPMPYIMIVIDELADLMMMAP 588

Query: 116 -------CDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168
                  C + Q       A  TG  + +    +   D       +        A++   
Sbjct: 589 DETETYICRLAQ------MARATGIHLIIA-TQRPSVDVITGLIKANFPSRIAFAVTS-Q 640

Query: 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGS 205
           +    I+D    E      D  ++  DS  +V +QG+
Sbjct: 641 IDSRVILDGPGAEQLLGRGDMLYMAADSAKLVRIQGT 677


>gi|50427219|ref|XP_462222.1| DEHA2G15620p [Debaryomyces hansenii CBS767]
 gi|49657892|emb|CAG90716.1| DEHA2G15620p [Debaryomyces hansenii]
          Length = 347

 Score = 35.1 bits (80), Expect = 9.7,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 1  MRLSGRQENQMREISLTRRVSKYAEG-----SCLVKFGDTHLLTTATL 43
          +R   R  N+ + + ++    +  EG     S +VK G+T ++   TL
Sbjct: 32 LRPCLRNFNEFKPLEVSTGNLQELEGNFTVGSSIVKNGNTTVICGITL 79


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.172    0.530 

Lambda     K      H
   0.267   0.0526    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,540,268,965
Number of Sequences: 14124377
Number of extensions: 286058707
Number of successful extensions: 689610
Number of sequences better than 10.0: 5284
Number of HSP's better than 10.0 without gapping: 6239
Number of HSP's successfully gapped in prelim test: 1738
Number of HSP's that attempted gapping in prelim test: 663905
Number of HSP's gapped (non-prelim): 10995
length of query: 242
length of database: 4,842,793,630
effective HSP length: 135
effective length of query: 107
effective length of database: 2,936,002,735
effective search space: 314152292645
effective search space used: 314152292645
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 80 (35.1 bits)